LOCUS NC_014910 4637013 bp DNA circular BCT 20-JAN-2011 DEFINITION Alicycliphilus denitrificans BC chromosome, complete genome. ACCESSION NC_014910 VERSION NC_014910.1 GI:319760738 DBLINK Project: 49953 KEYWORDS . SOURCE Alicycliphilus denitrificans BC ORGANISM Alicycliphilus denitrificans BC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus. REFERENCE 1 (bases 1 to 4637013) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Daligault,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N., Oosterkamp,M.J., Veuskens,T., Weelink,S.A., Plugge,C.M., Stams,A.J.M. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Alicycliphilus denitrificans BC JOURNAL Unpublished REFERENCE 2 (bases 1 to 4637013) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-JAN-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4637013) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Daligault,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N., Oosterkamp,M.J., Veuskens,T., Weelink,S.A., Plugge,C.M., Stams,A.J.M. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (03-JAN-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP002449. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Alicycliphilus denitrificans BC collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Missing num_replicons :: 3 ref_biomaterial :: JCM 14587 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Facultative isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.2 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03280 Greengenes ID :: 39244 Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: WGS ##Genome-Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4637013 /organism="Alicycliphilus denitrificans BC" /mol_type="genomic DNA" /strain="BC" /db_xref="taxon:596153" gene 206..1627 /locus_tag="Alide_0001" /db_xref="GeneID:10106510" CDS 206..1627 /locus_tag="Alide_0001" /inference="protein motif:TFAM:TIGR00362" /note="TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: dia:Dtpsy_0001 chromosomal replication initiation protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein dnaa" /protein_id="YP_004124676.1" /db_xref="GI:319760739" /db_xref="GO:0003677" /db_xref="GO:0003688" /db_xref="GO:0005524" /db_xref="InterPro:IPR001957" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013159" /db_xref="InterPro:IPR013317" /db_xref="InterPro:IPR018312" /db_xref="InterPro:IPR020591" /db_xref="GeneID:10106510" /translation="MHEGPSHSSHDTDGDSAGQGLWQACTEQLAQDLPEQQFNTWIKP LVAQVSPDFSKVTLLVANRFKLDWIRAQYAGRISALLEELYGQPVTLELALAQRESVA RTYVRPVPASIEAPAANAPAGAAAEEPPAGAFRTRLNLALTFDTLVEGTANRMARSAA MHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVGNKLLADRPDAKVLYIHAEQFVSDVVK SYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDT YPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAILINKARAEHAEMPEEVAFFVAKN VRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSIQNRQISVENIQKTVADY YKIKVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKI GAERQQLTELNQQLHVLEQTLKG" misc_feature <224..>490 /locus_tag="Alide_0001" /note="hypothetical protein; Validated; Region: PRK06672" /db_xref="CDD:180654" misc_feature 260..1624 /locus_tag="Alide_0001" /note="chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149" /db_xref="CDD:178902" misc_feature 716..1087 /locus_tag="Alide_0001" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 737..760 /locus_tag="Alide_0001" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(740..763,926..928,1025..1027) /locus_tag="Alide_0001" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 914..931 /locus_tag="Alide_0001" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1076..1078 /locus_tag="Alide_0001" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1349..1618 /locus_tag="Alide_0001" /note="C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571" /db_xref="CDD:119330" misc_feature order(1418..1420,1442..1447,1466..1468,1484..1492, 1517..1531,1538..1540,1547..1552) /locus_tag="Alide_0001" /note="DnaA box-binding interface [nucleotide binding]; other site" /db_xref="CDD:119330" gene 1754..2860 /locus_tag="Alide_0002" /db_xref="GeneID:10102025" CDS 1754..2860 /locus_tag="Alide_0002" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR00663" /note="SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: dia:Dtpsy_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain" /codon_start=1 /transl_table=11 /product="DNA polymerase iii, beta subunit" /protein_id="YP_004124677.1" /db_xref="GI:319760740" /db_xref="GO:0003677" /db_xref="GO:0003887" /db_xref="GO:0008408" /db_xref="InterPro:IPR001001" /db_xref="GeneID:10102025" /translation="MIVLKATQDKVLAVLQSVSGIVERRHTLPILANVLIRKTGNALQ FTTSDLEIQIRTTAELGGDTGDFTTTVGARKLIDILKTMPADQTVSLENSQTKLILKG GKSRFTLQTLPAEDFPLVQEAASFGPAFSVPQKTLKTLLSQVSFAMAVQDIRYYLNGI LFVAEGKTLSLVATDGHRLAFASSELDMEVPKQEVILPRKTVLELQRLLSDADGAIEM RFANNQAKFGFGGMEFVTKLVEGKFPDYNRVIPRNHHNVITLGRAPLLASLQRTAIMT SEKFKGVRLNIEPGSLRVASSNAEQEEAVDELDIDYGGDSIEIGFNVTYLIDVLANMG QDMVRMELADGNSSVVFGIPDNTHFKYVVMPMRI" misc_feature 1763..2857 /locus_tag="Alide_0002" /note="DNA polymerase III subunit beta; Validated; Region: PRK05643" /db_xref="CDD:180180" misc_feature 1763..2854 /locus_tag="Alide_0002" /note="Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the...; Region: beta_clamp; cd00140" /db_xref="CDD:29053" misc_feature order(1826..1828,1973..1975,1994..1996,2351..2353) /locus_tag="Alide_0002" /note="putative DNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29053" misc_feature order(1976..1978,1985..1987,2063..2065,2069..2071, 2573..2575,2666..2671) /locus_tag="Alide_0002" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29053" misc_feature order(2273..2275,2279..2290,2717..2719,2843..2854) /locus_tag="Alide_0002" /note="beta-clamp/clamp loader binding surface; other site" /db_xref="CDD:29053" misc_feature order(2273..2275,2279..2284,2498..2500,2603..2605, 2642..2647,2726..2728,2843..2854) /locus_tag="Alide_0002" /note="beta-clamp/translesion DNA polymerase binding surface; other site" /db_xref="CDD:29053" gene 2979..5561 /locus_tag="Alide_0003" /db_xref="GeneID:10102026" CDS 2979..5561 /locus_tag="Alide_0003" /inference="protein motif:TFAM:TIGR01059" /note="TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; KEGG: dia:Dtpsy_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein" /codon_start=1 /transl_table=11 /product="DNA gyrase, b subunit" /protein_id="YP_004124678.1" /db_xref="GI:319760741" /db_xref="GO:0003677" /db_xref="GO:0003918" /db_xref="GO:0005524" /db_xref="InterPro:IPR000565" /db_xref="InterPro:IPR001241" /db_xref="InterPro:IPR002288" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR011557" /db_xref="InterPro:IPR013506" /db_xref="InterPro:IPR018522" /db_xref="GeneID:10102026" /translation="MTDENQPDPQTTAPASVDAGGYGEGAIQILEGLEAVRKRPGMYI GDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVIDNGRGIPTGVKMD DKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKKLRLTVRRDGK THQLEFSKGVVQNRLIEVVDGFEVSPMKIVGPTEKRGTEVRFLPDTEIFKENSDFHYE ILAKRLRELSFLNNGVRIRLIDERTGKEDDFSGAGGVKGFVEFINGTKKVLHPTAFHA TGARPAESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTR VIGKYIEQNELAKKAKVDVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPV EDIVAKALTEYLEEKPQDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKL ADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLSSN EIITLITALGTGIGKASEDGNGKSGADDFDAAKLRYHRIIIMTDADVDGAHIRTLLLT FFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDNFLLRVALNHASISTGG DAPRTLAGDELATLARTHQHAERVIDRLSAFMDAEALRAAADGVAFNLDTLEDAQASA VQLQARLRELNTSGVPADVTGEIDPRTDKPILRISRHHHGNIKSSLITQDFVAGDDYA ALAEAAESFRGLIQEGAKVMRGEGEKQKEEKISDFRQAMQWLIGEAERTTARQRYKGL GEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAG NIDV" misc_feature 3042..5558 /locus_tag="Alide_0003" /note="DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939" /db_xref="CDD:184903" misc_feature 3135..3446 /locus_tag="Alide_0003" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(3153..3155,3165..3167,3174..3176,3240..3242, 3246..3248,3252..3254,3258..3263,3390..3401) /locus_tag="Alide_0003" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 3165..3167 /locus_tag="Alide_0003" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(3252..3254,3258..3260,3390..3392,3396..3398) /locus_tag="Alide_0003" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 3735..4235 /locus_tag="Alide_0003" /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are...; Region: TopoII_Trans_DNA_gyrase; cd00822" /db_xref="CDD:48467" misc_feature 3918..3920 /locus_tag="Alide_0003" /note="anchoring element; other site" /db_xref="CDD:48467" misc_feature order(4092..4094,4101..4106,4110..4112) /locus_tag="Alide_0003" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48467" misc_feature order(4110..4112,4116..4118) /locus_tag="Alide_0003" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48467" misc_feature 4359..4736 /locus_tag="Alide_0003" /note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of...; Region: TOPRIM_TopoIIA_GyrB; cd03366" /db_xref="CDD:173786" misc_feature order(4377..4382,4389..4391,4632..4634,4638..4640, 4644..4646) /locus_tag="Alide_0003" /note="active site" /db_xref="CDD:173786" misc_feature order(4377..4379,4632..4634) /locus_tag="Alide_0003" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173786" misc_feature 5355..5525 /locus_tag="Alide_0003" /note="DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986" /db_xref="CDD:189792" gene 5636..6049 /locus_tag="Alide_0004" /db_xref="GeneID:10102027" CDS 5636..6049 /locus_tag="Alide_0004" /inference="protein motif:PFAM:PF03692" /note="PFAM: protein of unknown function UPF0153; KEGG: dia:Dtpsy_0006 protein of unknown function UPF0153" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124679.1" /db_xref="GI:319760742" /db_xref="InterPro:IPR005358" /db_xref="GeneID:10102027" /translation="MRSPIAIVDVDRPDTWTRYRSGLCNSCAANCCTMPLEVQLPDLV RLGLVDPFEAEHVAPKLIARRLLKARLVDHYSPRHGLFTMARRADGDCGFLDAATRLC TVYERRPETCRLHPQTKSPRPGYCAYGARTLQRRG" misc_feature 5669..6046 /locus_tag="Alide_0004" /note="Flagellin N-methylase; Region: FliB; cl00497" /db_xref="CDD:186037" gene complement(6074..7267) /locus_tag="Alide_0005" /db_xref="GeneID:10102028" CDS complement(6074..7267) /locus_tag="Alide_0005" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A2137 acyl-CoA transferase/carnitine dehydratase" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004124680.1" /db_xref="GI:319760743" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102028" /translation="MASLDGLKVVDLSRVLGGPLCAQILGDHGADVVKVEGPAGDETR TWGPPFNDAGMASYFAGINRNKRTVCVDLSEPEGRDVVMRLLQDADVLVENFKVGTLE RWGMGYDEVLRERFPRLIHCRVTGFGATGPLGGLPGYDAAVQALSGLMSINGDPDGVA TRMGVPIVDVTTGLNAVIGILMALHERERSGRGQSVESALFDSALFSLYPHSINTLFT GRAPQRSGNGHPNIAPYDTYATATEPIYLAVGNNGQFQRLCEAVGHAHLAEDERYATN AQRAVHRFELKKDLQSAFSSFDAQTLFRKLVAVGVPCGVIQNVVEALAHPHTAHRGMV AEVEGFRSVASPIKFSRTPASYRLRPQEIGQSTLQVLGEAGLSQEQITLLLERGVIRQ APRPE" misc_feature complement(6098..7258) /locus_tag="Alide_0005" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(7277..8134) /locus_tag="Alide_0006" /db_xref="GeneID:10102029" CDS complement(7277..8134) /locus_tag="Alide_0006" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_A2138 enoyl-CoA hydratase/carnithine racemase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004124681.1" /db_xref="GI:319760744" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10102029" /translation="MQAEDSEAWVLASRVGPVARIHLNRGDARNPLGVEMVQALSAAV GEASGQSGVRVILLTAAGPAFSAGGNLGNLGDRLAATAGPDGRDPIAAGNRRYGEFLT QLVNVPQVTVACVQGAAMGGGAGLACAVDIAIGSPEVKFGFPEAAIGLVPGQILPFVA ARLGLPAARRLVLTGRRIAAAEAHRIGLLDYVAESHQALGALTRQVLESVVATAPQAS ACTKRMLGRLPVAPLQASGALQGYLDEAAELFARQMRSEAMEGVSAAREKRPARWNEA GELSALDLA" misc_feature complement(7316..8107) /locus_tag="Alide_0006" /note="enoyl-CoA hydratase; Provisional; Region: PRK05995" /db_xref="CDD:180345" misc_feature complement(7532..8107) /locus_tag="Alide_0006" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(7691..7693,7700..7705,7769..7777, 7781..7783,7922..7936,7946..7948,8042..8044,8048..8050)) /locus_tag="Alide_0006" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(7769..7771,7928..7930)) /locus_tag="Alide_0006" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(7565..7567,7574..7576,7607..7609, 7616..7621,7625..7630,7634..7639,7652..7657,7661..7669, 7673..7675,7688..7699,7733..7744,7805..7807,7829..7831)) /locus_tag="Alide_0006" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 8188..9030 /locus_tag="Alide_0007" /db_xref="GeneID:10102030" CDS 8188..9030 /locus_tag="Alide_0007" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:H16_A2139 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124682.1" /db_xref="GI:319760745" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102030" /translation="MRNLDIGLLRTFVAVAERESFTNAAEKVYRTQAAVSQQMQKLES VLGCALFERVGRRKKLTVEGVRLLEYARRMVGLNDEAYRVITQQAATQPVKIGACADA VDTLLPAYLEICAENFPNLSIDIQVGRSRWLASALRKGDIDLMLDITPHPEFAHTVLR TSPVAWIAGARYHPQAGASVPLILMEAACPFRSSMVQALTEAGIPWHAAFETSTLAGV RAALRAGLGVTARAVEMLAPDLRVLDPQARLPALPPISFCLYWRADASHESAMKVRHL IAPH" misc_feature 8197..9003 /locus_tag="Alide_0007" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 8203..8379 /locus_tag="Alide_0007" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 8467..9006 /locus_tag="Alide_0007" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(8509..8514,8518..8523,8530..8532,8542..8544, 8548..8568,8812..8829,8845..8850,8854..8859) /locus_tag="Alide_0007" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(9027..10049) /locus_tag="Alide_0008" /db_xref="GeneID:10102031" CDS complement(9027..10049) /locus_tag="Alide_0008" /inference="similar to AA sequence:KEGG:H16_A2140" /note="KEGG: reh:H16_A2140 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004124683.1" /db_xref="GI:319760746" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102031" /translation="MQILNHESRLSRRELLRSAGAMGLGMAAGLPALAQGAGAADFRL DKQVRIIVAYGAGGASDAIARYVGDAIAQRGGKPVIVENRPGADGNIAAEAVVRAPTD AYNLLVSGSSTHAANATIYKKLAYDPDKDFTPLATMANTPYAMLVNPKRIAQTTAADF LAWARKDGQTLSFASANVGGRIAGERFKQLTRINAVNVPYKSSAQAMTDLIGGQFDYY FCDMLTALPQIKAGTVRALALSSSKRIASLPDVPTVAELGYPDFDVSSWIAIWSARAT TPQPVSAALSRWIGEALESPAGQDFLVKKGLVPTPVSPEHLLHLQARDTRDWGRIIIE AGMQQP" sig_peptide complement(9945..10049) /locus_tag="Alide_0008" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.772 at residue 35" misc_feature complement(9033..9917) /locus_tag="Alide_0008" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(9042..9863) /locus_tag="Alide_0008" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(10084..11856) /locus_tag="Alide_0009" /db_xref="GeneID:10102032" CDS complement(10084..11856) /locus_tag="Alide_0009" /inference="protein motif:PFAM:PF07287" /note="PFAM: protein of unknown function DUF1446; KEGG: reh:H16_A2141 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124684.1" /db_xref="GI:319760747" /db_xref="InterPro:IPR010839" /db_xref="InterPro:IPR018130" /db_xref="GeneID:10102032" /translation="MNQTVLIGGASGFWGDSQIAVPQLLRQPGLQYLVFDYLAETTMS ILQRARLRAPELGYATDFVTAAVGPHLREIKAKGVRLVSNAGGLNPAGCRDAILALAR EQGVDLKVAIVTGDDVLDLQPRFEPWGDEATADLPALMSANAYLGAAPVAQALAAGAD IVVTGRCVDSASLLGIAIHEFGWRMTDYDRLAQASLAGHLVECGAQATGGLFTDWEQV PDWADIGYPLVRLQADGSFELSQPEGAGGLVTRQTVGEQLLYEIGDPAAYELPDVVCD FTQVAITDLDGGRVRVQGARGRAPGGRYKVTATYQQGWHIAIMMAIRGQRALAKAQRT ADALLARTRRQMQAAGFADYEDTLVELLGAESMYGPHRRVADSREIVLRIAARHRDRR ALAFLQKEASSAGTSMGPGTRSHFGGRSDVQSIIRTASFLLPKAAVAVQVQAAPDEAP AAVEAADAAAAPAAPNPPEATAAGAAASGPTVRIALGRIAHGRSGDKGDDANIGLMAR DPKWLPVLRGQLTAERVLQYFAHLVQGPVQRYELPGLGAFNFVLRRALGGGGSCSLRS DPLGKCYAQMLLDMEIDCPEDLAP" misc_feature complement(10768..11838) /locus_tag="Alide_0009" /note="Protein of unknown function (DUF1446); Region: DUF1446; pfam07287" /db_xref="CDD:191720" gene complement(11853..13865) /locus_tag="Alide_0010" /db_xref="GeneID:10102033" CDS complement(11853..13865) /locus_tag="Alide_0010" /inference="protein motif:PFAM:PF02786" /note="PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: reh:H16_A2142 acetyl-CoA carboxylase alpha chain" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase l chain ATP-binding protein" /protein_id="YP_004124685.1" /db_xref="GI:319760748" /db_xref="GO:0003824" /db_xref="GO:0005524" /db_xref="GO:0016874" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011764" /db_xref="GeneID:10102033" /translation="MRFDTLLVANRGEIALRILRTARRMGLRTVAVYSDADAHGPHVR AADMAVHIGPTPADQSYRNGAALIEACRRTGAQAIHPGYGFLSENAEFAQAVADAGLV FVGPSARVIALMGNKAQAKQAMQAAGVPTVPGEQGCATQEQIAAAARRIGFPVILKAA AGGGGRGMRVVREAGDLAEMFRQAQSEAAGAFGSGEIIIERAIERGRHIEVQVLCDEH GRCLHLGERDCSTQRRFQKLIEEAPSPAVDAALREAMGQVARQACEAIGYTGVGTLEF LLDDQKRFYFMEMNTRLQVEHGVTELVTGLDLVEQQIRVAQGEALTFGQQDVRLKGHA IELRLCAEDPWAGFLPQVGTVGEWQAPAGIRTDSALASGMAISPFYDSMVAKLMAWGE SREACIAQLARACERTTALGVRTNLGFLARCLRHPRFAQGQVTTDFLAQEDLQQPFWR RAPSAHALAAAALVLGGAVKTAMAGPAERLGGRSLWLRDATAGGTTMQCTLARDAAGL VLHCGERAPGKAAVEDAQASSWQIAHLRWHDEAGGARLGLAIEGIYRELACWQEAAGR LWVQDGADAFVFERVERFEAAGARQGSGLLRAPMSGRVIAVLAGEGQSVAQGDPLVVI ESMKMEMPLAAPCAGRIARLHVGEGQQLDAGQAVLEVDSEEEKETP" misc_feature complement(11880..13862) /locus_tag="Alide_0010" /note="Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]; Region: COG4770" /db_xref="CDD:34383" misc_feature complement(13536..13859) /locus_tag="Alide_0010" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature complement(12903..13484) /locus_tag="Alide_0010" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(12546..12860) /locus_tag="Alide_0010" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" misc_feature complement(11883..12080) /locus_tag="Alide_0010" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature complement(order(11958..11960,11979..11987,12012..12014)) /locus_tag="Alide_0010" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature complement(11982..11984) /locus_tag="Alide_0010" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene complement(13882..15045) /locus_tag="Alide_0011" /db_xref="GeneID:10102034" CDS complement(13882..15045) /locus_tag="Alide_0011" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reh:H16_A2143 acyl-CoA dehydrogenase, long-chain specific" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124686.1" /db_xref="GI:319760749" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102034" /translation="MMTSDHIALQDSVRKLIEREIEPHVDEWEAAEIFPAHEVFKKLG SAGFLGVNKPVEFGGMGLDYSYEIAFCEAIGGISSGGVGMAIAVQTDMATPALTHFGS DELRELFLKPTVAGDMVVCLGVSESGAGSDVASLKTTARKDGDDYVINGSKMWITNGT QADWMCLLANTSEGDVHRNKSLICLPLRENGKLRPGISMQKIKKVGMWASDTAQVFFD EVRVPQRYRIGEEGKGFTYQMRQFQEERLSGATRRVTALSNVIDETIAYTRQRKAFGR SILDNQAVHFRLAELKTEVEMLRSLIYRAAQVHMGGGDMTELASMAKLKAGRLCREVT DSCLQYWGGMGFTWENKVSRAWRDLRLISIGGGADEIMLTIICKHMGILPKRA" misc_feature complement(13891..15042) /locus_tag="Alide_0011" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(13903..15033) /locus_tag="Alide_0011" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(13939..13941,13945..13947,13951..13959, 14575..14577,14581..14583,14674..14676,14680..14682, 14770..14772)) /locus_tag="Alide_0011" /note="active site" /db_xref="CDD:173838" gene complement(15177..16787) /locus_tag="Alide_0012" /db_xref="GeneID:10102035" CDS complement(15177..16787) /locus_tag="Alide_0012" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4" /note="KEGG: reh:H16_A2144 propionyl-CoA carboxylase beta chain; PFAM: carboxyl transferase" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase" /protein_id="YP_004124687.1" /db_xref="GI:319760750" /db_xref="InterPro:IPR000022" /db_xref="InterPro:IPR011762" /db_xref="InterPro:IPR011763" /db_xref="GeneID:10102035" /translation="MAEKTGTGQAPGGAQRNRAHMLERIDEVRRLEQRAVERSARSAR HFHAQGKLLPRERLAHLLDADRPFYELMTLSGYCGLEDPNPATSVPGSALIVGIGHIS GVRCMVAVNDSGISAGAMQALTGQKLIRAQEIALAQKLPFVQLVESAGGNLRKYRVER FVVGGGMFYSLARLSAAGLPVVALIHGSSAAGGAYLPGLSDYVVMVRGQAHAYLAGPS LLKAATGEEASDEELGGADMHAAVSGLADYVADNDLDGIMRVREIMQRIGWHGAPAPQ AAPPLHDADELLAIMPADMRTPVDMREVIARLVDGSEFHAFKERFGPATVCGYAAIEG HAVGILTNNGPLDSDGSNKAAQFIQLCVQLGRPLVFLQNITGFMVGRRHEEAGMIKHG AKLIQALSNAPVPRFTVLCGASYGAGNYGMCGRAFKPDLLFSWPNARTAVMGGEQAAM TMRTVAENAARRGGKDVDEQALAAESRAIVHTFESQSSAIHTSSLLLDDGVIDPRETR AWLGMALATAFDARERAVQPMQFGVARL" misc_feature complement(15180..16748) /locus_tag="Alide_0012" /note="3-methylcrotonyl-CoA carboxylase, beta chain; Region: PLN02820" /db_xref="CDD:178415" misc_feature complement(16107..>16550) /locus_tag="Alide_0012" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene complement(16899..17204) /locus_tag="Alide_0013" /db_xref="GeneID:10102036" CDS complement(16899..17204) /locus_tag="Alide_0013" /inference="protein motif:PFAM:PF00708" /note="PFAM: acylphosphatase; KEGG: ajs:Ajs_4152 acylphosphatase" /codon_start=1 /transl_table=11 /product="acylphosphatase" /protein_id="YP_004124688.1" /db_xref="GI:319760751" /db_xref="InterPro:IPR001792" /db_xref="InterPro:IPR017968" /db_xref="InterPro:IPR020456" /db_xref="GeneID:10102036" /translation="MSQANATIARHLHIHGRVQGVYYRQSMIEAARRLGVRGWVRNRS DGSVEALAAGPAPAVQVLIDWARAGPPAARVERVDVQEADAAQLSGLPAGFDRRETL" misc_feature complement(16944..17189) /locus_tag="Alide_0013" /note="Acylphosphatase; Region: Acylphosphatase; cl00551" /db_xref="CDD:193864" gene 17232..17516 /locus_tag="Alide_0014" /db_xref="GeneID:10102037" CDS 17232..17516 /locus_tag="Alide_0014" /inference="similar to AA sequence:KEGG:Ajs_4153" /note="KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /codon_start=1 /transl_table=11 /product="4fe-4S ferredoxin iron-sulfur binding domain-containing protein" /protein_id="YP_004124689.1" /db_xref="GI:319760752" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="GeneID:10102037" /translation="MLSPMHAPRKALPAIDPDRCTGCGWCVAACPPHVLSLQVQGMER FGAKRSVLHDAPGCTGCALCALRCPFDAIRMVRTTARRGEHGQDIEAKVD" misc_feature 17268..>17324 /locus_tag="Alide_0014" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature <17283..17459 /locus_tag="Alide_0014" /note="RPB11 and RPB3 subunits of RNA polymerase; Region: RNAP_RPB11_RPB3; cl11409" /db_xref="CDD:196219" misc_feature 17286..17447 /locus_tag="Alide_0014" /note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838" /db_xref="CDD:193313" gene 17834..19219 /locus_tag="Alide_0015" /db_xref="GeneID:10102038" CDS 17834..19219 /locus_tag="Alide_0015" /inference="protein motif:PFAM:PF00742" /note="PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: ajs:Ajs_4155 homoserine dehydrogenase" /codon_start=1 /transl_table=11 /product="homoserine dehydrogenase" /protein_id="YP_004124690.1" /db_xref="GI:319760753" /db_xref="GO:0016491" /db_xref="GO:0050661" /db_xref="InterPro:IPR001342" /db_xref="InterPro:IPR005106" /db_xref="InterPro:IPR016204" /db_xref="InterPro:IPR019811" /db_xref="GeneID:10102038" /translation="MFLEPQPSLLPETRAHAPATPPALRVGMIGMGTVGAGVWRVLRR NQALIAARAGRPIDIVAVAARTPARAAAVLEGAPGVRLLADPMRLATDPGVDVVLELA GGSGAARGWVLAALAHGKHVVTANKALLAEHGEELATVAARHGRTLAYEAAVAGGVPV VKALREGLAANRIHALAGVLNGTSNYILTRMQAGGLDLAAALAEAQALGYAEADPALD VDGTDAAHKLALLAANAFGMPVRLDAVHVEGLRGLRQGDVAAAAQLGYAVRLLAIARR GAEGVELRVHPALVPERHALARLSGAANGLLVQGDAAGEAFYGGAGAGGEPTASAVLA DLVDLARLPAGAHARAGVPTLGVHSRAAEQPAPLPMAQVRTRHFLRLLPGAALNEAEA LRLLARAGLSVQRRAWGPAPEGGAAPTLLLLTAPAPDAVAAHAAARLHERTGAIVRRL RVEDFSSSEYA" misc_feature 17921..18286 /locus_tag="Alide_0015" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 18323..18760 /locus_tag="Alide_0015" /note="Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742" /db_xref="CDD:189696" gene 19379..21553 /locus_tag="Alide_0016" /db_xref="GeneID:10102039" CDS 19379..21553 /locus_tag="Alide_0016" /inference="protein motif:SMART:SM00491" /note="SMART: helicase c2; DEAD-like helicase; KEGG: ajs:Ajs_4158 ATP-dependent DNA helicase DinG" /codon_start=1 /transl_table=11 /product="helicase c2" /protein_id="YP_004124691.1" /db_xref="GI:319760754" /db_xref="GO:0003676" /db_xref="GO:0005524" /db_xref="GO:0008026" /db_xref="InterPro:IPR006555" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014013" /db_xref="GeneID:10102039" /translation="MSTQPWAGQALQSFEAVVQSTAGFRVREGQRRMAEQVAQTFAQA QLGKLEDEDSQPRRAIAVVQAGTGVGKSLAYSVPAIAMALARGTRVLISTATVALQEQ LVHKDLPALAARMEQPFQFALAKGRGRYVCKLKLERLAGGAAGGEDGVPDDDLFPEEA AAQRQRPRHDAEARMRFYASMADALATGGWDGDRDTLDSPPEPEAWSPVAAEASSCTG KHCPLFSQCTYYERRKALVAAQVIVANHDLLLSSLGARLLPELDNCLLVIDEAHHLPA TALQQFACEADLSRLTWIDKLASRALRIGQLVEVEEIADIPNHAARLRAALQDAARLV MDLYGEQLRAPLPGRRQFSASMPTRARVQGGVLPEALAEPFSQAAHHAGGFLDALRAI AKALRGEMRDKPDEARRLSQLYAQIGALAPRLEGVHAAAQLLLQDAPDGAVPAAKWFT LETDGDFIVVRAHASPVLPGSTLQNHLWSAVRGAVLTSATLTGCGQFDFFLREAGLWG DDAVTTLAVPSPFDYALQGTLVATETRAEPRDAQAFTAEMVDALLSDLALVEAGALVL FTSREQMRQAVDLLPTAMRGAVLVQNTLPRPQLLARHRERVADGLPSIIFGMQSFGEG LDLPGRLCESLFITKLPFAPPDDPVGEARAEWLRGAGRDPFSELVVPATAIRLAQWVG RAIRTEEDRAHVYCYDKRLVRTGYGQRLLAGLPPFALQRRAA" misc_feature 19379..21547 /locus_tag="Alide_0016" /note="ATP-dependent DNA helicase DinG; Provisional; Region: dinG; PRK11747" /db_xref="CDD:183295" misc_feature 19562..>19690 /locus_tag="Alide_0016" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl14882" /db_xref="CDD:197446" misc_feature 21140..21487 /locus_tag="Alide_0016" /note="CRISPR/Cas system-associated DinG family helicase Csf4; Region: Csf4_U; cl09250" /db_xref="CDD:187934" gene 21566..22195 /locus_tag="Alide_0017" /db_xref="GeneID:10102040" CDS 21566..22195 /locus_tag="Alide_0017" /EC_number="2.7.7.7" /inference="protein motif:PRIAM:2.7.7.7" /note="PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; SMART: Exonuclease" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_004124692.1" /db_xref="GI:319760755" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR013520" /db_xref="GeneID:10102040" /translation="MPSPIAVIDFETTGMTPAQGARATEVAIVLMEGERVVDRFASLM KTGVWIPPFITRLTGITNAMVDAAPAAEPVMREAARFVGDAPMVAHNAAFDSRFWQSE LRHAGLDAPHPFACTVLLSRRIYPDAPSHSLGRLTDHLGLPRTGRAHRALADAEMAAA LLARMQHELCRRFGLDWPDHALLMRLQRCARQSMGRMLLEQRQIANASG" misc_feature 21581..22003 /locus_tag="Alide_0017" /note="DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127" /db_xref="CDD:176648" misc_feature order(21590..21601,21605..21607,21833..21838,21842..21850) /locus_tag="Alide_0017" /note="active site" /db_xref="CDD:176648" misc_feature order(21590..21592,21596..21598,21848..21850) /locus_tag="Alide_0017" /note="catalytic site [active]" /db_xref="CDD:176648" misc_feature order(21590..21601,21605..21607,21833..21838,21842..21847) /locus_tag="Alide_0017" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176648" gene 22262..22741 /locus_tag="Alide_0018" /db_xref="GeneID:10102041" CDS 22262..22741 /locus_tag="Alide_0018" /inference="protein motif:PFAM:PF00877" /note="PFAM: NLP/P60 protein; KEGG: ajs:Ajs_0001 NLP/P60 protein" /codon_start=1 /transl_table=11 /product="nlp/p60 protein" /protein_id="YP_004124693.1" /db_xref="GI:319760756" /db_xref="InterPro:IPR000064" /db_xref="GeneID:10102041" /translation="MRSLALPALMLAAGLLAAGCGTAPHGAPRASAYPRLSSEQSSDI AIHALGLVGTPYRYGGNTPDGGFDCSGLIGYVYGSRAGVAPPRTVALLSGFGEPVDED ELRTGDLVVFGGSRPTHAGIYVGGGRFVHAPSTGGTVRLDHLQSRYWAQQHASFRRP" sig_peptide 22262..22342 /locus_tag="Alide_0018" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.479 at residue 27" misc_feature 22418..22735 /locus_tag="Alide_0018" /note="NlpC/P60 family; Region: NLPC_P60; cl11438" /db_xref="CDD:196233" gene 22780..23883 /locus_tag="Alide_0019" /db_xref="GeneID:10102042" CDS 22780..23883 /locus_tag="Alide_0019" /EC_number="2.5.1.54" /inference="protein motif:TFAM:TIGR00034" /note="TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: ajs:Ajs_0002 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA" /codon_start=1 /transl_table=11 /product="phospho-2-dehydro-3-deoxyheptonate aldolase" /protein_id="YP_004124694.1" /db_xref="GI:319760757" /db_xref="GO:0003849" /db_xref="InterPro:IPR006218" /db_xref="InterPro:IPR006219" /db_xref="GeneID:10102042" /translation="MTLTDRPHPTPSTHDTTRIDDLRIKAVRPLITPAILEEWLPASD AAQALVEESRLQISRVLHGQDDRLIVVVGPCSIHDHDQAMEYARQLLAQARALAQDLL IVMRVYFEKPRTTVGWKGYINDPHLDGSFAINEGLERARALLLDILALGLPVGTEFLD LLSPQFISDLVSWGAIGARTTESQSHRQLASGLSCPVGFKNGTDGGVKVAADAIQAAQ APHAFMGMTKMGQAAIFETRGNRDCHVILRGGKAPNYGAADVQAACDLLEKAGQRAQV MIDLSHANSSKQHARQITVAAEVARQIAAGDARITGVMIESHLEEGRQDIVPGQALRH GVSVTDACISFAQTVPVLEQLAAAVRARRAAAS" misc_feature 22819..23844 /locus_tag="Alide_0019" /note="NeuB family; Region: NeuB; cl00496" /db_xref="CDD:186036" misc_feature 22951..23838 /locus_tag="Alide_0019" /note="DAHP synthetase I family; Region: DAHP_synth_1; pfam00793" /db_xref="CDD:189723" gene 24476..28096 /locus_tag="Alide_0020" /db_xref="GeneID:10102043" CDS 24476..28096 /locus_tag="Alide_0020" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; KEGG: dia:Dtpsy_0021 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004124695.1" /db_xref="GI:319760758" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10102043" /translation="MTDISAIELMERQTQEEALAHAHLLRVQQRIADLQQPLEQVLEQ AARAACEITGAAGAVIALRGEAPLDVQARAGEAPRPPPEAAEALWRRLEQLPGEAGDM SADHVQDTEEGAPARHFVAMPLRTGPLLAGMLQVIAAPGQGFAPRHLGHLHVLAESLG AMVQLRRVHGQLCASERQYRSLFAEHPQPMWVCERDSLRLLLANHAMARQYGYDAHEL PGMDMRMLWAPEHRDEADSAMTMCSDERAARSPALAPTVWHHMRKDGTRIDMEVFVGD TEFDGRPAWQILANDITERYRIEEELARLNRAKRLRSACSETLVRATSESDLLHAVCR AAVEIGGYRMGWVGMARNDSRKRIEVVAHAGAAREYLEHMQLSWSPQENGGQGPASVC LRSGRTVIVRDVQDSPALKGWTERMARLGLHAVVCLPLRDARRTFGLLTLSAPQVLHV GPQETQLLEAMAADLAFGIQNLRARAEQQRLQAAMVKVATAVSAGTGGAFFERLAHHM ADTLSAQVACVVRLQAPVQGEPLQAVTLSHVCGGVAQPTGAYALDGTPSQELLRQGQL VIRDHLTQRYPRDAVLARAGVRSYVGRQLASSDGTPMGMVMVMFREPLAQVEFVCSAL QIFAARASAELQRQMDDARIRHQASLLDRARDAIIVRDLEHRITFWNEGAERMYGWSR EEALGRSMASLLHHDPEDFLHATAQVLQHGDWSGEIVQRSRNGRSIEVEGRWTLVRND QGEPESILAIDSDIGPRKSHEREIQRLAFFDPLTGLPNRAQFMQRMGHALATARRQHQ GGALLFIDLDNFKTLNDTLGHDQGDRLLQLVAQRLSTCVRSVDTVARLGGDEFVVLLE QLTAHAATLAEHANKVGEKILNVLCVPYALAGHQYRSTPSIGIALFDDTPTSMGDLLK QADLAMYQAKNAGRSTLRFFDPGMQRAVDERATLEADLRNALSQQEFTLHYQPQVDSR GGILGVEALLRWTHPQRGMVSPAQFIPVAEETGLILPLGRWVLHKACTLLAAWQKFPG LAHLTMAVNVSSRQFRDPGFVGDVARVLAVTGAPSAQLKLELTESLLVEDMVSTIATM EALRAHGVGFSLDDFGTGYSSLAYLKRMPLEQLKIDRSFVRDLLADENNAAIVRTIVA LAASLGLSVIAEGVETDEQRNWLTRAGCTVYQGYFFNRPLSSDRLDGLLRSYLGPPGG LD" misc_feature 24998..25381 /locus_tag="Alide_0020" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 25004..25177 /locus_tag="Alide_0020" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 25403..25882 /locus_tag="Alide_0020" /note="FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203" /db_xref="CDD:32385" misc_feature 25454..25882 /locus_tag="Alide_0020" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 26420..26767 /locus_tag="Alide_0020" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 26435..26737 /locus_tag="Alide_0020" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(26483..26485,26495..26497,26513..26515,26552..26563, 26633..26635,26648..26650) /locus_tag="Alide_0020" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(26543..26545,26555..26557,26576..26578,26585..26590, 26669..26671,26675..26677) /locus_tag="Alide_0020" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 26780..27271 /locus_tag="Alide_0020" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(26891..26893,27020..27022) /locus_tag="Alide_0020" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(26906..26908,26915..26920,26930..26932,26942..26944, 27008..27010,27014..27025) /locus_tag="Alide_0020" /note="active site" /db_xref="CDD:143635" misc_feature order(26996..26998,27098..27100) /locus_tag="Alide_0020" /note="I-site; other site" /db_xref="CDD:143635" misc_feature 27323..28030 /locus_tag="Alide_0020" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(28163..28966) /locus_tag="Alide_0021" /db_xref="GeneID:10102044" CDS complement(28163..28966) /locus_tag="Alide_0021" /inference="protein motif:PFAM:PF09339" /note="KEGG: dia:Dtpsy_0022 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="regulatory protein iclr" /protein_id="YP_004124696.1" /db_xref="GI:319760759" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10102044" /translation="MARTRQIDFDEGADSRRFVTALARGLDVLACFHADEKWLANAEI AARTGLPKPTVVRLAYTLCVLGYLRHSRESGKYALGDSLAALGITMVSNLKLRRIARP YMQDLADRYDISVSLGIRNGLSVLYVENCRSGAPLSLGLDLGSRIPVAETAMGHALLA VMEPRERERLLAEVRQAEPARWPRLREAIEAGCAHWQARGFTVVVRDWQTDIAGVGAA IRQPDGRVITFNAGGSASKFPRELLEQEIGPQLARMVKGLESFVRSDDA" misc_feature complement(28640..28912) /locus_tag="Alide_0021" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(28178..28909) /locus_tag="Alide_0021" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(28214..28564) /locus_tag="Alide_0021" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 29153..30124 /locus_tag="Alide_0022" /db_xref="GeneID:10102045" CDS 29153..30124 /locus_tag="Alide_0022" /inference="similar to AA sequence:KEGG:Ajs_0005" /note="KEGG: ajs:Ajs_0005 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124697.1" /db_xref="GI:319760760" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102045" /translation="MTRPLFSRRTLALLLAAGFAAGPALAQADRFPNRPIKVLIGFTA GGSTDVPFRVLAENASKILGQPVIIENKPGAGGVLPAQMMQNTPADGYTLAQIPLPVF RLPYTQKINWDPATDLQYVIGLAGYAFGLVVPADSPIKSMQDYIAYAKTHPGKLNYGT PGALTTLHLTMENIAMQAGVTLNHIPFKGNSESLQAVLGGHVMSVADTPGWAPYVEQG KLRLLSTWGDKRSAKFPNTPTLKESGINLVQTSPFGLAAPKGTDPKVVQVLHDAFKKA MEMPNYKESLAKFDMDTYYMDSATYRQYALDTMKTEKVIIDKLGLGK" sig_peptide 29153..29233 /locus_tag="Alide_0022" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.889 at residue 27" misc_feature 29243..30121 /locus_tag="Alide_0022" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 29303..30115 /locus_tag="Alide_0022" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(30135..31163) /locus_tag="Alide_0023" /db_xref="GeneID:10102046" CDS complement(30135..31163) /locus_tag="Alide_0023" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bpt:Bpet3280 hypothetical protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124698.1" /db_xref="GI:319760761" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102046" /translation="MDFALNEEQQMLQASARRFLADHHPLARARRALPWSDGAQQRLW KEMAAMGWMALLLPEAHGGLELGLTEASLVAEEAGRQLLNLPWASSAVLLALWFKAAP NDAPSVLRDAAQAATAGTRALHCVADTDAWWDHAGQCSDIVVVRGWHDGAAPLQIALV DAAQVAAAPALDPTLRQGAAARMPLQWHTLDVPARQRMHARAAHRLMLAAELVGVGQA ALDMASAHAKERVQFGKPIGSYQALKHQLANAWMGVDNARLAVLYATAALDGGLPDAR FACAVAEYTAIDGALQSTRTAIQVHGGMGFTWEHDAHLLLKRAQHLAARLGGASRALA QVETLTLP" misc_feature complement(<30879..31154) /locus_tag="Alide_0023" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(30207..>30527) /locus_tag="Alide_0023" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" gene complement(31168..32355) /locus_tag="Alide_0024" /db_xref="GeneID:10102047" CDS complement(31168..32355) /locus_tag="Alide_0024" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bpt:Bpet3281 acyl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124699.1" /db_xref="GI:319760762" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102047" /translation="MQVGYPAEDEAFRLTLREWFETHYPRFKAGWPVQPDPNELAWRR AWEDYVCRAGWSGLGWPLEYGGKAWPLTRQAIFHEEQARIGAPLGVNIIGHGILAPTL IHFASAAQKARYLPGILANRDIWCQGYSEPGAGSDLAALATRAERRGDHYVLNGHKIW TSFAHIADHCFVLARTDPGAQRHKGISFLLVDMKSPGVRVEPIRQITGEADFNEVFFE DVRVPLDALVGEENGGWRLAMAAASFERGTYFIPRQVRFAQEVEALARLAAGISREGG ESALQDPHLRREIARLAVDSHVLRLKGLRALTHALRGGPPGAEGSSAKLHWSEAHQKM MSIAMELLGERTLQGPGPAGADPAAALWARDYLWTRAETILAGTSEVQRNILAEQMLG LPR" misc_feature complement(31177..32349) /locus_tag="Alide_0024" /note="pimeloyl-CoA dehydrogenase, large subunit; Region: pimC_large; TIGR03204" /db_xref="CDD:132248" misc_feature complement(31180..32334) /locus_tag="Alide_0024" /note="Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Region: ACAD_fadE6_17_26; cd01152" /db_xref="CDD:173841" misc_feature complement(order(31870..31872,31876..31878,31948..31953, 31966..31971,31975..31977)) /locus_tag="Alide_0024" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:173841" misc_feature complement(order(31192..31194,31225..31230,31804..31806, 31948..31950)) /locus_tag="Alide_0024" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173841" misc_feature complement(31621..31623) /locus_tag="Alide_0024" /note="catalytic base [active]" /db_xref="CDD:173841" gene complement(32402..33367) /locus_tag="Alide_0025" /db_xref="GeneID:10102048" CDS complement(32402..33367) /locus_tag="Alide_0025" /inference="similar to AA sequence:KEGG:Bpet3282" /note="KEGG: bpt:Bpet3282 secreted protein" /codon_start=1 /transl_table=11 /product="secreted protein" /protein_id="YP_004124700.1" /db_xref="GI:319760763" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102048" /translation="MIKQLMAGIALAAAALCGPAQAQNYPSKPVTIVVPFAPGGATDI MARTLAERLNKRLGQPVIVENKPGAGTMIASEHVARAQPDGHTVLLAASSLGIAPALY AKVNYDPVKDFTPISLVASVVHVLQVHPSIPVKNVAELIAWVKANPGKANYGSVGAGT STHLESELFNTMAGVKMTHVPYKGSAPALMDLVGGNLQVMFDAWASSGPFVKDGKTRL LAVTTAQRSKLLPDVPTVAESGLPGYEAMPWLGFVAPAGTPAAAVNRFHAELMEVLKE PEVQDKFRALGLDIIGNTPQQFADFIKRDIVKWAKVVKDSGAKAD" sig_peptide complement(33299..33367) /locus_tag="Alide_0025" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 23" misc_feature complement(32417..33298) /locus_tag="Alide_0025" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(32414..33235) /locus_tag="Alide_0025" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(33405..35498) /locus_tag="Alide_0026" /db_xref="GeneID:10102049" CDS complement(33405..35498) /locus_tag="Alide_0026" /inference="protein motif:PFAM:PF02222" /note="PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; CoA-binding domain protein; KEGG: rme:Rmet_0842 CoA-binding" /codon_start=1 /transl_table=11 /product="ATP-dependent carboxylate-amine ligase domain protein ATP-grasp" /protein_id="YP_004124701.1" /db_xref="GI:319760764" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR003781" /db_xref="InterPro:IPR011761" /db_xref="GeneID:10102049" /translation="MTTHRLEPLLNPASIAIVGASSNPARIGGMPLAHLTRFGYAGRI YPINPKYEEVFGLRCWRDIEALPAAPDLAVLAIAAQDVLPMLRRCAAKGVRAAIVYAA GFAEAGAQGAALQAELEAFVAGTDMVVAGPNAMGFANLNSQAHTSFASVFNTAPMQQG PGSVSLLTQSGNVCAAVYAIARRLGVDFSHFINTGNEACVDFAQYLEYLAQDAATQVC VGYMEELRDGPRFIAAAEEFARRDKLLVLYKAGETDKGAQAVRSHTSALAGDQAIYRA AFRQLDIIQSHDFVQMAQLAHLAGYRHRRAGRRVAIITISGALGAILADKFIGAGLDV PTLPQALQDQLRAGIPDYGMVSNPVDVTGNVVNDPGFVRTAMQALAQSDAVDTVLVYA PGYLLDRMADDLCAVSRQYPKLFVAIDTGAATAREQLRAGGVPVFEDIGVATSALAPF LLWQERRRRNRWMAVRRQSAPARAALPDSLDEYRTKRLLAQHGVPAAPERVAATADEA AAAADAIGYPVVIKVLSPDIAHKTEAGGVRLRLADAAQVRQAFGEVLASCRRHDPRAR IEGILVCRMESGVAELIVGATRDPVFGMTLTVGLGGVLTELYQDVSHRVLPVDEAMAR EMLGELKAFPLLAGYRGRPPGDVDAACAAIAAFSRAVLALGDQVAEVEVNPLLVKEAG QGACMLDALAIPSGQ" misc_feature complement(34155..35483) /locus_tag="Alide_0026" /note="acetyl coenzyme A synthetase (ADP forming), alpha domain; Region: AcCoA-syn-alpha; TIGR02717" /db_xref="CDD:131764" misc_feature complement(<35211..35474) /locus_tag="Alide_0026" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(<33408..33956) /locus_tag="Alide_0026" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042" /db_xref="CDD:31244" gene complement(35513..36313) /locus_tag="Alide_0027" /db_xref="GeneID:10102050" CDS complement(35513..36313) /locus_tag="Alide_0027" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_0841 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004124702.1" /db_xref="GI:319760765" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10102050" /translation="MAFDTLEIENHGAVRRILLAREAQRNAQSQQMLDELMTALDDAR HDDGVHAVVIGGKGAHFSAGHDLKQAQAERSSFTVEERWAYEELRYFDYSLRIWDFPK PTIAQVQGACVAGGFMIANMCDLVVAGESAYFSDPVGHTLGAAATEVLIHPWVMGARK AKELLFTGGRLSASEAHAIGMVNRVVSDAGLGESTLALAQQIAKAPPFGLRLIKRSIN RTLDAQGLRTALAAHFDTHQLSHLSEGFLTARDRGLANAIQKNREASA" misc_feature complement(35516..36313) /locus_tag="Alide_0027" /note="enoyl-CoA hydratase; Provisional; Region: PRK08290" /db_xref="CDD:181356" misc_feature complement(35708..36298) /locus_tag="Alide_0027" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(35900..35902,35903..35905,35969..35977, 35981..35983,36113..36127,36137..36139,36233..36235, 36239..36241)) /locus_tag="Alide_0027" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(35969..35971,36119..36121)) /locus_tag="Alide_0027" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(35708..35713,35720..35722,35765..35767, 35774..35776,35807..35809,35816..35821,35825..35830, 35834..35839,35852..35857,35867..35875,35879..35881, 35897..35902,35933..35944,36005..36007,36038..36040)) /locus_tag="Alide_0027" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 36408..37172 /locus_tag="Alide_0028" /db_xref="GeneID:10102051" CDS 36408..37172 /locus_tag="Alide_0028" /inference="protein motif:PFAM:PF09339" /note="KEGG: bpt:Bpet3285 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="regulatory protein iclr" /protein_id="YP_004124703.1" /db_xref="GI:319760766" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10102051" /translation="MDTPQGTAGAQSLRRALQLLRLLAQHQEDGIRLTEVMAASGLER STAHRLLSCLVEEQFAERDPGSKAYRLGLDAMQLGFASMRRVPLVDHCRPLMQRLARM SGDTVFLVIRQGDYCLCLHREEGHFPVKVFTTDVGGRRLLGLGAGGLALMAQLSDAEV ERIFDRHVEEYTQACFTRERLQQAVRRTRAAGYADIVDTLTVGVSGVGATFAASPGTL AAISFGAITPRLPPERKREMARLLMDQLVSNQAGGA" misc_feature 36483..37139 /locus_tag="Alide_0028" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 36483..36710 /locus_tag="Alide_0028" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(37432..38037) /locus_tag="Alide_0029" /db_xref="GeneID:10102052" CDS complement(37432..38037) /locus_tag="Alide_0029" /inference="protein motif:PFAM:PF09411" /note="PFAM: Lipid A 3-O-deacylase-related; KEGG: dia:Dtpsy_0024 hypothetical protein" /codon_start=1 /transl_table=11 /product="lipid a 3-o-deacylase-related protein" /protein_id="YP_004124704.1" /db_xref="GI:319760767" /db_xref="InterPro:IPR018550" /db_xref="GeneID:10102052" /translation="MQPLVSPGLLCLSGAGRHGRRPLLSATAACLLCAIPPAFAQQAA HSPSVYLQASRAQHGTDAVTLGATLPFGTWSMPLWGGELRGHWDMYLSRWSFDGIAGH DSTLVLGVKPTLRLRPDQGRSAWFWEAGVGGTLANHRYRTAEREFSTRFNFASYLGVG INLGARRQHELLLSVEHLSNASIKKPNPGLNFVHLRYALHF" sig_peptide complement(37915..38037) /locus_tag="Alide_0029" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.981 at residue 41" misc_feature complement(37435..37866) /locus_tag="Alide_0029" /note="Lipid A 3-O-deacylase (PagL); Region: PagL; pfam09411" /db_xref="CDD:150172" gene complement(38152..38745) /locus_tag="Alide_0030" /db_xref="GeneID:10102053" CDS complement(38152..38745) /locus_tag="Alide_0030" /inference="similar to AA sequence:KEGG:Ajs_0007" /note="KEGG: ajs:Ajs_0007 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124705.1" /db_xref="GI:319760768" /db_xref="GeneID:10102053" /translation="MTRFKITQRLACTALAAALAGMAIPSMAQPAPGAGPTAEQAQRQ GPRAMTPEQRQQFMLQRAEAFKQKLQLTPAQEPAWNTFMQSMRPDAGSRKAWLEMKDM DKLTTPERIDRMRAIRAQRAAEMDRRGDAVKAFYATLTPAQQKTFDAEGTRMYGRRGA QWDRHMGDHKGDWRGPRNGMHRHGPGPMPAPGAPAAQ" sig_peptide complement(38659..38745) /locus_tag="Alide_0030" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 29" misc_feature complement(38296..38568) /locus_tag="Alide_0030" /note="Domain of Unknown Function (DUF1520); Region: DUF1520; pfam07480" /db_xref="CDD:148852" gene 38962..39903 /locus_tag="Alide_0031" /db_xref="GeneID:10102054" CDS 38962..39903 /locus_tag="Alide_0031" /inference="protein motif:PFAM:PF04381" /note="PFAM: exonuclease RdgC; KEGG: ajs:Ajs_0008 recombination associated protein" /codon_start=1 /transl_table=11 /product="exonuclease rdgc" /protein_id="YP_004124706.1" /db_xref="GI:319760769" /db_xref="InterPro:IPR007476" /db_xref="GeneID:10102054" /translation="MFKNIIVYRIAPEWHAELTQLEEALAKAPFQECGATQEKSSGWV PPRGEAHGLLAESVGGQWILRFMTESKMLPGTVLARKVKEKAAQIEQQTGRKPGKKET RELKDEAKLDLLPMAFTKQGSTWVWVDCEARLLVLDTGVQGRADEIVTALVEALPGLS VALVDTQTSPQAAMAHWLKEQEPPAGFSIDRECELKAADESKAVVRYARHPLDIEEVQ AHIQAGKLPTKLAMTWDDRVSFVLTEGLQLKKLAFLDTVFEGQPQDDGGFDADVAIAT GELSKLIPDLIEALGGEGRTELGSPAQPPQDDGGAPF" misc_feature 38962..39852 /locus_tag="Alide_0031" /note="Putative exonuclease, RdgC; Region: RdgC; cl01122" /db_xref="CDD:194044" gene 39923..41176 /locus_tag="Alide_0032" /db_xref="GeneID:10102055" CDS 39923..41176 /locus_tag="Alide_0032" /inference="protein motif:PFAM:PF07670" /note="PFAM: nucleoside recognition domain protein; KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein" /codon_start=1 /transl_table=11 /product="nucleoside recognition domain protein" /protein_id="YP_004124707.1" /db_xref="GI:319760770" /db_xref="GO:0001882" /db_xref="InterPro:IPR011415" /db_xref="InterPro:IPR011642" /db_xref="GeneID:10102055" /translation="MALNRVWTAFFLIAFATAAVRWLLGEAGIFQALLSAMFDGARAG FEISLGLAGIMALWLGLMRVGEQAGMVELLARLAGPLLRRLFPGVPAGHPAQGAMTLN ISANLLGLDNAATPLGLKAMQELQTLNREPEGQASNAQIMFVVMNTAGLTLIPTSVIA IRQSVALKQGLGAGFNAADIFLPTLLVTFASLLAGVLSVAVAQRLPLWRARLLLPLLA VGSLLAAAVAALSRLPAERAAQVAGTTGAAVILGVVALFLLAGAWRRVNIYDAFIDGA KEGFGVAVQIIPYLIAILVAIGVFRAAGCMDALLAALGAGVAALGWNTDFLPALPVGL MKVLSGAGARGLMIDVLQTHGVDSFVGRLAAIIQGSTETTFYVLAVYFGSVGVKHTRH ALACALLADAVGLIAAIGVGYAMLR" misc_feature 40004..40531 /locus_tag="Alide_0032" /note="Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]; Region: SpmA; COG2715" /db_xref="CDD:32608" misc_feature 40712..41170 /locus_tag="Alide_0032" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" gene 41657..41908 /locus_tag="Alide_0033" /db_xref="GeneID:10102056" CDS 41657..41908 /locus_tag="Alide_0033" /inference="similar to AA sequence:KEGG:Dtpsy_0031" /note="KEGG: dia:Dtpsy_0031 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124708.1" /db_xref="GI:319760771" /db_xref="GeneID:10102056" /translation="MTDSALIPLPDHLAVDPRSPHHVAAVFQQQADIGIRFNGKERFD VEEYCVSEGWIKVPAGKTLDRRGRPLLITLKGSVEAFYK" misc_feature 41684..41902 /locus_tag="Alide_0033" /note="Protein of unknown function (DUF3297); Region: DUF3297; pfam11730" /db_xref="CDD:152166" gene complement(41877..43754) /locus_tag="Alide_0034" /db_xref="GeneID:10102057" CDS complement(41877..43754) /locus_tag="Alide_0034" /inference="similar to AA sequence:KEGG:Balat_0053" /note="KEGG: blt:Balat_0053 beta-galactosidase I" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124709.1" /db_xref="GI:319760772" /db_xref="GeneID:10102057" /translation="MNFLLRSAAALLCSLFVGGAATAKPQVATLIVMPQDLRQNPQIV SDLQRRGINHATVYLTWADVEAQPGHFDFSAYDPYFDQLTQGGLSLVVVLDMGGRAYF DGTGKHFPGRTTVPEWLYRQVPDGFMKNFSGQSTPQPDFMNPTVRQFSAQFVRNAVAH LSQRYPGKVTAYSIGLQEEHEIKYGQTGYQWRDYADAAQAAFRQQTGAPLPVINYTSD IALGLPRTEPLLHAHKQFREANLKEATCFYADAIRSQGGRAMSYFGELFTAHDGIYAT SVAEQLADCLDIAVIDYNFYDGYSLSPDARVLPMLANYMASVGYKQIMVGAYAEQWER VKKSTELLPVISRTLSTALAQPNVIGYEVGGLQRQLDTHLTGTVDLDKLQALRVQPPV PATASTGKKLTVGILASTSNYYVWHGDRSGGVNVHREALLEAYNLLSTQPGFDVHVIG EKNLQEDDLLQRLNAIVVPHQAALPASIKQQLKVYWKKGGTLVQDMRLGEFDENGKPV YDWMHEVFGIENITWRPRGGIFLTDDGQILRLKPARKLYTGYAAMTPRPGYRLLATDI LNKRQGIMVRGERTLVFGFTPQLVEDATQAMWQQIFVREIANAVRCPTPTTCKTPPRS P" sig_peptide complement(43683..43754) /locus_tag="Alide_0034" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.974 at residue 24" misc_feature complement(<43143..43604) /locus_tag="Alide_0034" /note="Beta-galactosidase; Region: Glyco_hydro_42; cl03154" /db_xref="CDD:155315" gene complement(43852..44289) /locus_tag="Alide_0035" /db_xref="GeneID:10102058" CDS complement(43852..44289) /locus_tag="Alide_0035" /inference="protein motif:TFAM:TIGR02044" /note="TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: dia:Dtpsy_0035 transcriptional regulator, MerR family; SMART: regulatory protein MerR" /codon_start=1 /transl_table=11 /product="cu(i)-responsive transcriptional regulator" /protein_id="YP_004124710.1" /db_xref="GI:319760773" /db_xref="GO:0003677" /db_xref="GO:0005507" /db_xref="GO:0016563" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR011789" /db_xref="InterPro:IPR015358" /db_xref="GeneID:10102058" /translation="MSRQIAAPAQDWPVPIGTAAERAGVSARMVRHYESLGLLTGVAR TSNGYRQYTEADVHTLRFIRRARDLGFSMEEIAALLGLWQDKARASSQVKQIAQKHIA SLSERIAAMQAMQRSLQALVGCCHGDDRPDCPILDDLAGPGAH" misc_feature complement(43870..44244) /locus_tag="Alide_0035" /note="Cu(I)-responsive transcriptional regulator; Region: CueR; TIGR02044" /db_xref="CDD:131099" misc_feature complement(43870..44244) /locus_tag="Alide_0035" /note="Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators; Region: HTH_CueR; cd01108" /db_xref="CDD:133383" misc_feature complement(order(44140..44148,44197..44199,44239..44244)) /locus_tag="Alide_0035" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133383" misc_feature complement(order(43873..43878,43885..43887,43891..43893, 43897..43911,43924..43926,43945..43950,43957..43959, 43969..43971,43987..43989,43999..44001,44008..44010, 44017..44022,44041..44043,44053..44055,44080..44085, 44095..44097,44104..44106)) /locus_tag="Alide_0035" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133383" misc_feature complement(order(43891..43893,43915..43917,44020..44022)) /locus_tag="Alide_0035" /note="copper binding site [ion binding]; other site" /db_xref="CDD:133383" gene complement(44286..44483) /locus_tag="Alide_0036" /db_xref="GeneID:10102059" CDS complement(44286..44483) /locus_tag="Alide_0036" /inference="protein motif:PFAM:PF00403" /note="PFAM: Heavy metal transport/detoxification protein; KEGG: dia:Dtpsy_0036 heavy metal transport/detoxification protein" /codon_start=1 /transl_table=11 /product="heavy metal transport/detoxification protein" /protein_id="YP_004124711.1" /db_xref="GI:319760774" /db_xref="GO:0046872" /db_xref="InterPro:IPR006121" /db_xref="GeneID:10102059" /translation="MQYTFQVQGMTCGHCERAVVHAVRQVDTDAIVKVDLATGQVAVE SDQPREVLAAAIQEEGYKVAA" misc_feature complement(44289..44483) /locus_tag="Alide_0036" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cl00207" /db_xref="CDD:193707" gene 44653..46884 /locus_tag="Alide_0037" /db_xref="GeneID:10102060" CDS 44653..46884 /locus_tag="Alide_0037" /inference="protein motif:TFAM:TIGR01525" /note="KEGG: dia:Dtpsy_0037 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="heavy metal translocating p-type atpase" /protein_id="YP_004124712.1" /db_xref="GI:319760775" /db_xref="GO:0004008" /db_xref="GO:0005524" /db_xref="GO:0046873" /db_xref="InterPro:IPR000150" /db_xref="InterPro:IPR001756" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR006403" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="InterPro:IPR017969" /db_xref="InterPro:IPR018303" /db_xref="GeneID:10102060" /translation="MNSASLRTADAPDTLDLGVGGMTCASCVGRVERALRKVPGVRDA TVNLATERAHIVVDAAAAAGMDAVLRRAVRNAGYEPRSVAEQDADAAAEQSPWAGFTP VAIGLLLSAPLVLPMFGDLFGRHWMLPAWAQFLLATPVQFILGARFYKAGWHAAKALT GNMDLLVALGTSAGYGLSLWLWWTAAPGHAPHLYFEASAVVVTLVLLGKWLEARAKRQ TTAAIRALHALRPEVAHLLVRDGEVDVPIAEVMAGDRLVVRPGERIPVDGLVQEGHTQ VDESMLTGEPLPVVREAGGTLTGGSINGDGRIVMQVTAVGGETVLARIIRLVEDAQAA KAPIQRLVDQVSAVFVPAVIAIALVTLAGWLWAGVGLETALIRAVAVLVIACPCALGL ATPAAIMAGTGVAAKHGILIKDAEALEVAHRVGTVAFDKTGTLTVGRPRLTAFHAHPE SDEPALLSAVAAVQSGSEHPLARAVVAAAQERGLALAQPEGVRAVPGRGTEGEVAGRS YLVGSLRWMQELGVDLGPLAGQAAALQGQGATVSAVAERVTQGLAARALLAFGDEPKP GAREALERLKARGVRCVMISGDNRGAAEAMARRLGLDPAAGEVMAEVLPGDKAAAVAA LKVGGKVVAMVGDGVNDAPALAAADVGMAMGNGTDVAMHAAGITLMRGEPRLVAAALD VSHRTVAKIRQNLFWAFAYNVAGIPLAALGYLNPVVAGAAMALSSVSVMTNALLLKRW RAE" misc_feature 44692..46878 /locus_tag="Alide_0037" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature 44698..>44805 /locus_tag="Alide_0037" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature order(44716..44724,44731..44733) /locus_tag="Alide_0037" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature 45250..45909 /locus_tag="Alide_0037" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature 46270..>46461 /locus_tag="Alide_0037" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 47011..48660 /locus_tag="Alide_0038" /db_xref="GeneID:10102061" CDS 47011..48660 /locus_tag="Alide_0038" /inference="protein motif:PFAM:PF00015" /note="KEGG: ajs:Ajs_0020 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein" /codon_start=1 /transl_table=11 /product="chemotaxis sensory transducer" /protein_id="YP_004124713.1" /db_xref="GI:319760776" /db_xref="GO:0004871" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:10102061" /translation="MTMYALMRWFSIRMRMIGAIGVVLTLLFMLGGAGMLGMFRLHGL SQDFIAQPHAAVRLLGELRGEMGQIRQAEKDMIIHYERPEAVRAAHTQWLTALDRAKA VATRIDGLNLEQEQALARDIAKHLDTYREQFAHVARQLEEGGYDTATIANRMSTKAVA QFVVAAEKLQALDKALGAEVDGAIARQGSIAGQTQWLFGLAVLITVAVVVPFTLLNMV SICRPLEAARALAQSIAGGNLAQRIEVDGRDEVADLQRALLDMQGGLGALVSQVRDAS GNIATASQEIAMGNQDLSARTEQTASNAQEAVAALSQLTATVQQTASSSQVANQLVAS ASGTATRGGQVVQQAVSSMHEISASSRKIGDIIGLIDSIAFQTNILALNAAVEAARAG EQGRGFAVVAGEVRNLAQRSAAAASEIKGLIQSSVQAVEGGVRHVEDAGKAMQEIVVS VQRVTDMIGEIHSAATEQAAGIGEVNASVGEIDRMTQQNAALVEESAAAAESLREQAA RLSQVVQQFQLADGQQAAARAAAPARAALESDPALPRLGVA" misc_feature 47443..48477 /locus_tag="Alide_0038" /note="Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840" /db_xref="CDD:31182" misc_feature 47602..47805 /locus_tag="Alide_0038" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 47974..48567 /locus_tag="Alide_0038" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(48816..51911) /locus_tag="Alide_0039" /db_xref="GeneID:10102062" CDS complement(48816..51911) /locus_tag="Alide_0039" /inference="protein motif:TFAM:TIGR00914" /note="KEGG: aav:Aave_0038 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="heavy metal efflux pump, czca family" /protein_id="YP_004124714.1" /db_xref="GI:319760777" /db_xref="GO:0008324" /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR004763" /db_xref="GeneID:10102062" /translation="MKRLIHYALHQPLFVVLGTLLFAMAGVIAFKNLSVEAFPDVTDT QVTIIALYPGRAAEEVEKQVTLPIEVALSGLPNAIRVFSHTQFGLSFTVVTYDDNASV HIVRQQVGERLRSVDLPPGVEAEIAPNATPVGEIMRYRLRGDGYSTTELRSTEDWVVE RALRQVPGVADVVAMGGSIKQYEVQPDLDKLRAYKLTFQNLLDALGRGNANAGGSYVA QGTQQYAIRGIGLLQSSEDIGRIVVAAHGGTPVLIRDVAQVRVGAVPRLGTVGQDDDD DVVTGIVVMRKGENPSVVLKDVKAKIADLNARSLPPGMQIVPFYDRTWLMEKTLTTVF RNLVEGALLVSLVLYIFLSNLRASLAVVVVIPLSLLATFMGLKFMGVPANLLSLGAMD FGIIVDGAVIVIENIMHRLAERGEDMDDRDRRETIIEAASEVGRPTLFSMLIIIAAHI PIFALQRHEGRIFQPMALSVTTALVGSLIFSLTLVPLLAYWMLRRKLPHGDNRVVVSA KRLYGPVLDWALARRRTVVVISLAMFAVALAAASRLGSEFLPELDEGTIWVNVRLPAS VSNDEAARMLRQVRQALRTVPEVRTTISKAGQPEDGTDPKTISMAEVFVDVKPADQWR AGLTHKQLIEEMDRAVSAIPGLEPAFSQPIRDNVLESISQIDGQIVIKVSGDDLGELK RITQGIEREIKQVPGVYRAEIDRLGDLPQLVIDIDRDRAARYGLNVGDIQDVIEAALA GKATTSLWEGERKFAVAVRLPEDRRAIASLPGTPIATPDGGYTTLGAVASIRETTGAM NIARENGSRTMAIGIFIKDRDMGSVVKDMQERVRARIQLPPSYRVTWSGEFENQERAM KRLSVVVPISLLLIFVLLFDAFKSFKTASLILVNVPLALIGGFIALWVLDIPLSVSAA IGFIALSGQAVLNGVVMLSVYQQLQAGGMGVLEAVRQGSMQRLRTVLMTALLAMLGLL PMALSHEIGAETQRPLAIVVIGGLVTATLLTLVVLPALYVAWFAPRRNGPAPEAPVAI A" misc_feature complement(48942..51911) /locus_tag="Alide_0039" /note="Putative silver efflux pump [Inorganic ion transport and metabolism]; Region: COG3696" /db_xref="CDD:33492" gene complement(51908..53161) /locus_tag="Alide_0040" /db_xref="GeneID:10102063" CDS complement(51908..53161) /locus_tag="Alide_0040" /inference="protein motif:TFAM:TIGR01730" /note="TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: aav:Aave_0039 RND family efflux transporter MFP subunit" /codon_start=1 /transl_table=11 /product="efflux transporter, rnd family, mfp subunit" /protein_id="YP_004124715.1" /db_xref="GI:319760778" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10102063" /translation="MVHSISSRVRASRTTRRPGRGLLALALALALCAAAVLQGCHKAP TEPAAPEAAPPILQSGQLRFPPGHPQLALLAVTEVQPARELVVDLPARLVWNEERTQR VYPAFAGRVSAIRADLGQNVKAGAPLALLASPDFGQAQADTAKARADQALAQQALARQ RELFEAGVVARKDLEQAEAEAARARAEAARAAARTSLYGGGGAVDQQLAITAGMGGVV VERNLNPGQEVRPDQSGPGTPALFVVTDPSSLWVLIDARESDLASLRPGDAFALQVPA YPGETFTGRVTATADAIDPVARTLKVRGLVPNADRRLKAEMLATARVSESRSTGFVVP AAALTLNGTTHMVYVQRESGVFEPRTVVLGHEGPKNVEVVQGLSAGEKVVTQNVLLLA RQFRLAQEASSTGSEAKAQPAKETP" sig_peptide complement(53054..53161) /locus_tag="Alide_0040" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.540 at residue 36" misc_feature complement(51989..52900) /locus_tag="Alide_0040" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene complement(53193..54434) /locus_tag="Alide_0041" /db_xref="GeneID:10102064" CDS complement(53193..54434) /locus_tag="Alide_0041" /inference="protein motif:PFAM:PF02321" /note="PFAM: outer membrane efflux protein; KEGG: aav:Aave_0040 outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="outer membrane efflux protein" /protein_id="YP_004124716.1" /db_xref="GI:319760779" /db_xref="GO:0005215" /db_xref="InterPro:IPR003423" /db_xref="GeneID:10102064" /translation="MGQAPAGWAQTPPAASGTPTLTLAQALAAARDNSDVALARHALA GARADVLAADHAPAPVLSTKAASIDLQNGVGGGNVVTRKRIDKSIGIDWTWERGDKRA LRTLAAQRALDAAQSDVQDMQTQQLQAALSAYYDLLAAQERLRETREIERGMAELDRV ANLRLKAGDLARQDAARTRIESERARSDSELAELARTQAAVALAQLTARGPGLQACAC DWPAQVAGPAPGGDLLTWAESRADVRAALARVQAAQAELDSAMALRKADVTIGASYDH YPGTSNRLVELRAQIPLQWGYRFEGEIGRAQAMLSAAQEALDKTRRLALLDLQSLQQQ AASAAQRAAGYENGILPRAREVAQSAELAYAKGAIPLTDLLDARRTLRATALEALAAR ADYAKAQGNWLLRTEPQLLLP" gene 54567..55292 /locus_tag="Alide_0042" /db_xref="GeneID:10102065" CDS 54567..55292 /locus_tag="Alide_0042" /inference="protein motif:PFAM:PF00072" /note="KEGG: aav:Aave_0041 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004124717.1" /db_xref="GI:319760780" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10102065" /translation="MRILIVEDDSVLRGVMQRSLADAGHRVDVAASVAEAHHFWCVQP FDAVLLDLNLPLDGVDEGAGGAQLGSGLAVLRAARARGDRTPVLVLTARDRTHERIAG LDAGADDYLGKPYDLAEVEARLRALVRRSRGTQDRTVAGALVLDRHVRRFTLHGLPLE LPAREFEVLWELMTPPGRVVNKRTLSEKLSDFDETLGDNALEAFISRLRKKLAGSGAG IRTLRGLGYMLEAQAAPPADGMP" misc_feature 54567..55265 /locus_tag="Alide_0042" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 54576..54950 /locus_tag="Alide_0042" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(54585..54590,54717..54719,54738..54740,54837..54839, 54894..54896,54903..54908) /locus_tag="Alide_0042" /note="active site" /db_xref="CDD:29071" misc_feature 54717..54719 /locus_tag="Alide_0042" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(54726..54731,54732..54740) /locus_tag="Alide_0042" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 54903..54911 /locus_tag="Alide_0042" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 54984..55253 /locus_tag="Alide_0042" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(55050..55052,55107..55112,55164..55166,55173..55175, 55197..55202,55227..55229,55242..55244) /locus_tag="Alide_0042" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 55289..56716 /locus_tag="Alide_0043" /db_xref="GeneID:10102066" CDS 55289..56716 /locus_tag="Alide_0043" /inference="protein motif:PFAM:PF02518" /note="KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004124718.1" /db_xref="GI:319760781" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013727" /db_xref="GeneID:10102066" /translation="MSTPPQALPAPPPSLRTRLLRHVLGPLALTWLVGTVASALLANS FTQRAFDRSLLDDAYAIAANVREEPDGLEFPLSSREVKAVLFDQVETVYFAVLREDGT LLAGNASLPAPPPHEGQVYRFSDMRFHGRALRAVRLQLTTPAPFEVITAQTVHSRSVM LRSALLYSLASQVLLLVVLALWLGRAIRQELRPLAMFQQALDQRDARDLAPMRVEAST RDLQRLGRAVNDLLARVAQGVQAQREFAGNVAHELRTPLAGIRALASYGLAQKEPAVW REQLTGIVQSEARASHLVDQLLALALADEARGSMPLRPVPLDQLVRDTVLRFLPRADA AGVDLGALGLEQAVTMQGQPLLIEGVLSNLIDNALRYGVPPAGEAPQVTVELAREDGS VVLSVLDNGPGIAPVQRQQLQQRWVQGRDGERLGQGAGLGLGIVARYAELLGARLEFT PGPQGRGLCARLVFAPLASTPGGEN" misc_feature 55328..56632 /locus_tag="Alide_0043" /note="heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386" /db_xref="CDD:162333" misc_feature 55364..55774 /locus_tag="Alide_0043" /note="Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521" /db_xref="CDD:149540" misc_feature 56006..56176 /locus_tag="Alide_0043" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(56021..56023,56033..56035,56045..56047,56054..56056, 56066..56068,56075..56077,56123..56125,56135..56137, 56144..56146,56156..56158,56165..56167) /locus_tag="Alide_0043" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 56039..56041 /locus_tag="Alide_0043" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 56357..56680 /locus_tag="Alide_0043" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(56375..56377,56387..56389,56396..56398,56477..56479, 56483..56485,56489..56491,56495..56500,56576..56587, 56633..56635,56639..56641,56657..56662,56666..56668) /locus_tag="Alide_0043" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 56387..56389 /locus_tag="Alide_0043" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(56489..56491,56495..56497,56576..56578,56582..56584) /locus_tag="Alide_0043" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(56742..57857) /locus_tag="Alide_0044" /db_xref="GeneID:10102067" CDS complement(56742..57857) /locus_tag="Alide_0044" /inference="protein motif:PFAM:PF00724" /note="PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: dia:Dtpsy_0040 NADH:flavin oxidoreductase/NADH oxidase" /codon_start=1 /transl_table=11 /product="NADH:flavin oxidoreductase/NADH oxidase" /protein_id="YP_004124719.1" /db_xref="GI:319760782" /db_xref="GO:0010181" /db_xref="GO:0016491" /db_xref="InterPro:IPR001155" /db_xref="GeneID:10102067" /translation="MTSLFDPIQAGDLHLANRIAMAPLTRNRSPQAVPRNITATYYAQ RASAGLLITEGTAISAQGQGYSDVPGLYGSDQLDGWKKVTQAVHARGGKIVTQLWHVG RVSHSLLQPGRAAPVAPSAVQANAKTYVVDPETGRGEFMHTCTPRALTAEELPDIVHT YAAAARNAVRSAGFDGVEIHGANGYLLDQFLKDGANRRTDDYGGGIARRARLMLEVTR AVADAIGGGRVGLRLSPVTPANDIHDSNPQPLFEHLARQLAPLSLAYIHVIEGATGGP REVEGRPFDYAAFKAAYRDAGGRGAWMVNNGYDRDMALQAVASGHADMVAFGRAFISN PDLVERLRRNAPLNEWDRPTFYGGGEKGYIDYPAMAD" misc_feature complement(56745..57857) /locus_tag="Alide_0044" /note="NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902" /db_xref="CDD:32086" misc_feature complement(56802..57851) /locus_tag="Alide_0044" /note="Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933" /db_xref="CDD:73381" misc_feature complement(order(56868..56876,56880..56882,56940..56942, 57162..57164,57567..57569,57693..57695,57783..57785, 57789..57791)) /locus_tag="Alide_0044" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73381" misc_feature complement(order(56871..56876,56880..56882,56940..56942, 57141..57143,57162..57164,57303..57305,57309..57311, 57318..57320,57540..57542,57561..57563,57567..57569, 57693..57695,57783..57785,57789..57791)) /locus_tag="Alide_0044" /note="active site" /db_xref="CDD:73381" misc_feature complement(order(56871..56873,57303..57305,57309..57311, 57318..57320,57561..57563,57783..57785)) /locus_tag="Alide_0044" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73381" misc_feature complement(57303..57305) /locus_tag="Alide_0044" /note="catalytic residue [active]" /db_xref="CDD:73381" gene complement(57920..58528) /locus_tag="Alide_0045" /db_xref="GeneID:10102068" CDS complement(57920..58528) /locus_tag="Alide_0045" /inference="protein motif:PFAM:PF02798" /note="PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_0042 glutathione S-transferase domain protein" /codon_start=1 /transl_table=11 /product="glutathione s-transferase domain protein" /protein_id="YP_004124720.1" /db_xref="GI:319760783" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="InterPro:IPR017933" /db_xref="GeneID:10102068" /translation="MKLYYSPGACSLSPHIVLHEAGLAYEPVLASTKTHKLADGTDFY SINPLGYVPVLELDDGTRLREGPAIVQYLADQAPQKNLAPAPGTLARYRLQEWLSFIG TEVHKGFGPLFAPGTPEEYKPQLKQRLLSRLQWVDGELAGKQYLMGDHFTVADAYLFT VTNWAQFVGLDISQLKNLAAYRERIGARPAVQAAMKAEGLLK" misc_feature complement(57929..58528) /locus_tag="Alide_0045" /note="glutathionine S-transferase; Provisional; Region: PRK10542" /db_xref="CDD:182533" misc_feature complement(58295..58528) /locus_tag="Alide_0045" /note="GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_N_Beta; cd03057" /db_xref="CDD:48606" misc_feature complement(order(58304..58306,58316..58318,58469..58474, 58484..58486,58490..58492,58505..58510)) /locus_tag="Alide_0045" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature complement(order(58331..58336,58373..58378,58499..58501)) /locus_tag="Alide_0045" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48606" misc_feature complement(order(58304..58306,58313..58315,58328..58330, 58334..58339,58376..58378)) /locus_tag="Alide_0045" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature complement(57944..58264) /locus_tag="Alide_0045" /note="GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_C_Beta; cd03188" /db_xref="CDD:48115" misc_feature complement(order(58145..58147,58157..58159,58166..58168, 58181..58183,58208..58210,58220..58222,58232..58234, 58241..58243,58250..58255,58262..58264)) /locus_tag="Alide_0045" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature complement(order(57947..57949,57959..57961,57965..57967, 58037..58039,58049..58051,58070..58072,58211..58213, 58256..58258)) /locus_tag="Alide_0045" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature complement(order(58028..58030,58037..58039,58046..58048, 58190..58192,58196..58201,58208..58213,58223..58225)) /locus_tag="Alide_0045" /note="substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48115" gene complement(58561..58857) /locus_tag="Alide_0046" /db_xref="GeneID:10102069" CDS complement(58561..58857) /locus_tag="Alide_0046" /inference="protein motif:PFAM:PF03692" /note="PFAM: protein of unknown function UPF0153; KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124721.1" /db_xref="GI:319760784" /db_xref="InterPro:IPR005358" /db_xref="GeneID:10102069" /translation="MDYRPGCGACCSAPSISSPIPGRPGGKPAGVRCVQLDDDARCRI FGHPGRPPVCASLQPHPAMCGGSRQEAESILSRLERLTQPGAPYTSAAKAMRKA" gene complement(58864..59442) /locus_tag="Alide_0047" /db_xref="GeneID:10102070" CDS complement(58864..59442) /locus_tag="Alide_0047" /inference="protein motif:PFAM:PF03358" /note="PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_0044 NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="nadph-dependent fmn reductase" /protein_id="YP_004124722.1" /db_xref="GI:319760785" /db_xref="InterPro:IPR005025" /db_xref="GeneID:10102070" /translation="MKLLVFAGSTRQQSFNRRLARIAARMGRDAGAEVTLLELSDLDI PMYNADLEARGTPPDVIRLKEILDAHPAWIICSPEYNGSYTGLLKNTIDWASSPVAGH PVWTDVTRPFAGKVVGVLSASNGALGGLRSQSHLAPLLVNLGCWLAPRNYALARAASA FDAGDDLADEAQRQQVRAVVDQVLWAAQRLCA" misc_feature complement(58969..59442) /locus_tag="Alide_0047" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 59574..61553 /locus_tag="Alide_0048" /db_xref="GeneID:10102071" CDS 59574..61553 /locus_tag="Alide_0048" /inference="protein motif:TFAM:TIGR00136" /note="manually curated; TIGRFAM: glucose inhibited division protein A; KEGG: dia:Dtpsy_0045 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A" /codon_start=1 /transl_table=11 /product="glucose inhibited division protein a" /protein_id="YP_004124723.1" /db_xref="GI:319760786" /db_xref="InterPro:IPR002218" /db_xref="InterPro:IPR004416" /db_xref="InterPro:IPR020595" /db_xref="GeneID:10102071" /translation="MLYPQEFDVIVVGGGHAGTEAALAAARMGCRTLLLTHNIETLGQ MSCNPSIGGIGKGHLVKEVDALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRI LYKAAIRRMLENQPNLWLFQQAVDDLMVEGDRVAGAVTQIGLRFRARAVVLTAGTFLD GRIHVGLNNYAAGRAGDPPAVSLSARLKELKLPQGRLKTGTPPRIDGRSIDFSQCEEQ PGDGMPGGVNEGVLPVFSFMGSTVMHPRQVPCWITHTNARTHEIIRSGFDRSPMFTGK IEGVGPRYCPSVEDKINRFADKESHQIFLEPEGLTTHEFYPNGISTSLPFDIQYALVR SMRGLENAHILRPGYAIEYDYFDPRSLKSSFETRQIQGLFFAGQINGTTGYEEAAAQG LFAGLNAALQCRGEAPWLPRRDEAYLGVLVDDLVTKGVTEPYRMFTSRAEFRLQLRED NADMRLTEAGRRMGLVDDARWDAFAAKRDAVSRETERLKSTWVNPRILAAAEAERVLG KAIDHEYNLFDLLRRPDVDYARLMSLDGGKYASGDVSRETLGALSEPVIEQVEIAAKY AGYIDRQKDEVQRAAHYEQLRLPPELDYMQVSALSIEVRQKLQKHRPETLGQASRISG VTPAAISLLLVHLKKGGFKGFAQPAPTGEGHVVSA" misc_feature 59580..61511 /locus_tag="Alide_0048" /note="NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; cl11520" /db_xref="CDD:187089" misc_feature 59580..61502 /locus_tag="Alide_0048" /note="Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]; Region: GidA; COG0445" /db_xref="CDD:30794" gene 61537..61776 /locus_tag="Alide_0049" /db_xref="GeneID:10102072" CDS 61537..61776 /locus_tag="Alide_0049" /inference="similar to AA sequence:KEGG:PC1_0787" /note="KEGG: pct:PC1_0787 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124724.1" /db_xref="GI:319760787" /db_xref="GeneID:10102072" /translation="MSFPLEERRALLACKGVGAAVVARLEQMGYGSLAHLAKANTPDI LAAGARLTGSSCWKNSSQARAAIDAALALARSRHG" gene 61769..62416 /locus_tag="Alide_0050" /db_xref="GeneID:10102073" CDS 61769..62416 /locus_tag="Alide_0050" /inference="protein motif:TFAM:TIGR00138" /note="KEGG: dia:Dtpsy_0046 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein" /codon_start=1 /transl_table=11 /product="methyltransferase gidb" /protein_id="YP_004124725.1" /db_xref="GI:319760788" /db_xref="GO:0008649" /db_xref="InterPro:IPR003682" /db_xref="GeneID:10102073" /translation="MVDAAPLRQGVQALGLDLTEEQIARLLDFLALLQKWNKVYNLTA VRDPQEMLTHHLLDSLAAVAPLRRHLAQQGGAGRRLLDVGSGGGLPGVVFAICCPDLD VSCVDTVAKKAAFIQQAAAALGLRNLHGIHARVETLAGPFDVVSCRAFASLPDFVNWS RQVLAPHAVWLAMKGRHPQDEIAALPVGVQVFHVEQLAVPGLDAERCIVWMRPVA" misc_feature 61838..62410 /locus_tag="Alide_0050" /note="16S rRNA methyltransferase GidB; Reviewed; Region: gidB; PRK00107" /db_xref="CDD:178868" gene 62453..63067 /locus_tag="Alide_0051" /db_xref="GeneID:10102074" CDS 62453..63067 /locus_tag="Alide_0051" /inference="protein motif:PFAM:PF01810" /note="PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dia:Dtpsy_0047 lysine exporter protein (LysE/YggA)" /codon_start=1 /transl_table=11 /product="lysine exporter protein (lyse/ygga)" /protein_id="YP_004124726.1" /db_xref="GI:319760789" /db_xref="InterPro:IPR001123" /db_xref="GeneID:10102074" /translation="MFGIADYGAFVAAIVLFLAIPGPGNLALITSTGKGGVRAGLAAC LGVIAADQVLMWAAVAGVAGLLAAYPAAFHAVQWLGAVYLGWMGYKMLTARPGDAPVL RIEPRHYFRQGAVITLLNPKAIVFYMAFFPLFVNPATHRGLATFAAMAATIAALTFLY SLVVVLLTHHLAERMRANPTVVRVLEKTAGTFLIGFGIKLAISK" misc_feature 62453..63061 /locus_tag="Alide_0051" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene 63076..63846 /locus_tag="Alide_0052" /db_xref="GeneID:10102075" CDS 63076..63846 /locus_tag="Alide_0052" /inference="similar to AA sequence:KEGG:Dtpsy_0048" /note="KEGG: dia:Dtpsy_0048 cobyrinic acid ac-diamide synthase" /codon_start=1 /transl_table=11 /product="cobyrinic acid ac-diamide synthase" /protein_id="YP_004124727.1" /db_xref="GI:319760790" /db_xref="InterPro:IPR000392" /db_xref="GeneID:10102075" /translation="MAKIFCIANQKGGVGKTTTSVNLAAGLAKIGQRVLLVDLDPQGN ATMGSGVDKRQLALSVYDVLLESSSIKEAAVPAEQCGYHVLGANRELAGAEVELVALE HRERRLKAALAEVDQDYDFVLIDCPPSLSMLTLNGLCSAHGVIVPMQCEYFALEGLTD LVNTIKQVHANLNRDLQIIGLLRVMFDPRITLQSQVSAQLKDHFGDKVFDTVIPRNVR LAEAPSYGLPGVVFDPVAKGSQAFVDFAREMVQRIQRM" misc_feature 63076..63840 /locus_tag="Alide_0052" /note="ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192" /db_xref="CDD:31385" misc_feature 63085..>63201 /locus_tag="Alide_0052" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature 63106..63126 /locus_tag="Alide_0052" /note="P-loop; other site" /db_xref="CDD:73302" misc_feature 63124..63126 /locus_tag="Alide_0052" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" misc_feature 63370..63621 /locus_tag="Alide_0052" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature 63448..63450 /locus_tag="Alide_0052" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene 63931..64473 /locus_tag="Alide_0053" /db_xref="GeneID:10102076" CDS 63931..64473 /locus_tag="Alide_0053" /inference="protein motif:PFAM:PF06821" /note="PFAM: protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124728.1" /db_xref="GI:319760791" /db_xref="InterPro:IPR010662" /db_xref="GeneID:10102076" /translation="MHPFQVLLLPGWQDSGPGHWQTEWERLHGYRRVQQHDWTRPLRG DWSARLEEVVADAPGEVLLAAHSLGCILAAWWAAHTRHARKVHGALLVAPGDVERPDL AAQIRGWAPIARRPLPFPAVLAGSRDDPYCAFERARAMAQDWGARFVDLGARGHVNAE SGLGDWPEGHALLQTLINKD" misc_feature 63946..64452 /locus_tag="Alide_0053" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 64479..65396 /locus_tag="Alide_0054" /db_xref="GeneID:10102077" CDS 64479..65396 /locus_tag="Alide_0054" /inference="protein motif:TFAM:TIGR00180" /note="TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein; SMART: ParB domain protein nuclease" /codon_start=1 /transl_table=11 /product="parb-like partition protein" /protein_id="YP_004124729.1" /db_xref="GI:319760792" /db_xref="GO:0003677" /db_xref="InterPro:IPR003115" /db_xref="InterPro:IPR004437" /db_xref="GeneID:10102077" /translation="MVTKKPKGLGRGLEALLGPKVADKAEQAQAEAQGLPSTLALDQL VPGVYQPRTRMDEGALYELAESIRAQGVMQPILVRRLGNGENVGKYEIIAGERRFRAS RLAGLNEVPVLVRDVPDEAAAAMALIENIQREDLNPLEEAQGLQRLIREFGLTHEQAA QAVGRSRSAASNLLRLLNLAEPVQTMLMAGDIDMGHARALLALDRATQITAGNQIAAR KLSVREAEGLVKKLGAEFNLTPQKPKKDKSRDMKRIEEELSDLLMAEVEVRVKKRVKR GSRTEEMGELAIAFGSLEALNGLIERLRG" misc_feature 64593..64871 /locus_tag="Alide_0054" /note="ParB-like nuclease domain; Region: ParBc; cl02129" /db_xref="CDD:154762" misc_feature 64611..>65174 /locus_tag="Alide_0054" /note="PRTRC system ParB family protein; Region: PRTRC_parB; TIGR03734" /db_xref="CDD:163446" gene 65421..66200 /locus_tag="Alide_0055" /db_xref="GeneID:10102078" CDS 65421..66200 /locus_tag="Alide_0055" /inference="similar to AA sequence:KEGG:Ajs_0032" /note="KEGG: ajs:Ajs_0032 methyltransferase type 12" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_004124730.1" /db_xref="GI:319760793" /db_xref="InterPro:IPR000209" /db_xref="GeneID:10102078" /translation="MRLSWPLPALLAWGVAWLLHAVLQPRLGTLASLLGATGVGVLAS LWGQNWWRRALIALGFPLSLALTGAAGLPAWAWLLPLAVLLLVYPLNAWRDAPLFPTP RGALHGLDALAPLPSGAAVLDAGCGLGDGLLALRAAYPRARLHGLEWSWPLALLCRLR CPWAHVRRGDIWAAGWGDYQLVYVFQRPESMARAAAKALAEMAPGSWLVSLAFEVPGL AACARLPGFAGQGVWIYRMGASAAAPRGATKECEASADVTL" sig_peptide 65421..65486 /locus_tag="Alide_0055" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.639) with cleavage site probability 0.636 at residue 22" gene 66260..67300 /locus_tag="Alide_0056" /db_xref="GeneID:10102079" CDS 66260..67300 /locus_tag="Alide_0056" /inference="protein motif:PFAM:PF01471" /note="PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein" /codon_start=1 /transl_table=11 /product="peptidoglycan-binding domain 1 protein" /protein_id="YP_004124731.1" /db_xref="GI:319760794" /db_xref="InterPro:IPR002477" /db_xref="GeneID:10102079" /translation="MSRKTLSLLAAACTVVALAGCETTNMKMGSQDAKTVATGAAAGG SAANESSQLERCQSPLGTVSLVENQDAGWYTILRNEYKLPPTANLLRLLIQQSNCFVV VERGAAGMRAMDRERQLMGSGEMRGGSNFGKGQMVASDYGLSPEIIFSNNDAGGVGGA LGGLIGGGRGRALAAIGGSLKTREASAMLTLVDNRSGVQVAASEGSASKSDFAGFGGI FGGSAGGGLGGYQNTAQGKVITAAFMDAYNQMVVALRNYKAQSVQGQGLGGGGKLGVD GGAAPSQTKAGAAMSVREAQERLNALGYNVGTPDGSAGPKTARALREFQQQQGLPVTG RLDAATAGALSR" sig_peptide 66260..66319 /locus_tag="Alide_0056" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.716 at residue 20" misc_feature 67133..67291 /locus_tag="Alide_0056" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene complement(67380..68285) /locus_tag="Alide_0057" /db_xref="GeneID:10102080" CDS complement(67380..68285) /locus_tag="Alide_0057" /inference="protein motif:SMART:SM00342" /note="SMART: Helix-turn-helix, AraC domain; KEGG: dia:Dtpsy_0054 transcriptional regulator, AraC family" /codon_start=1 /transl_table=11 /product="helix-turn-helix, arac domain protein" /protein_id="YP_004124732.1" /db_xref="GI:319760795" /db_xref="InterPro:IPR018060" /db_xref="InterPro:IPR018062" /db_xref="GeneID:10102080" /translation="MPIHAAPPPGHADAQAAPAHAPRAARVLSYVESLTPHLFVPSRA RPVRAKHRELRADTQVRPHSHPWAQVAISTTGVLRLTVPDGAYIVPPSRALWIPPGVE HAVTMVEDADLRTLYFHQPPGRCGPGVARAQEEPWRQCRVLEVSDLLRALVREMPSEP DDAPPLPPELLHRERHLSALILDELRRASSVRLGVDLPRDKRLRHLCEAVIADPTRHE TLADWARDTGASPRTVARLFRQELSSTFTQWRQQVILARAVALAAGRRPINQIAAELG YNSPSAFSAMVRRTVGLAPGRFLGA" misc_feature complement(67818..68129) /locus_tag="Alide_0057" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" misc_feature complement(67392..67742) /locus_tag="Alide_0057" /note="AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:32389" gene 68345..69610 /locus_tag="Alide_0058" /db_xref="GeneID:10102081" CDS 68345..69610 /locus_tag="Alide_0058" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0055 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004124733.1" /db_xref="GI:319760796" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10102081" /translation="MPMTTAATPSLRQDVRTIGLIGLAHGSSHFFHMLLPPLFPFLIK DFGYSYSELGLLLSVFFVVSGTGQALSGFLVDKVGARPVLFAALSSFAAAGLVAGSAG GYAGLVLAAVLAGLGNAPFHPVDFTILNKRVSPQRLGHGFSVHGISGNLGWATAPVFM AGIATATGSWRMACLGGAALALLVLAIMVWNRDALDDRQGAWAHQAAKGAVGAAAVQE HPMAFLRLPAVWLCFSFFFWSTCSLSAIQSFAAPSLQRMYDMPLSLTTMVVTGYMLCG AMGMVLGGFLVGRVERLEKTISVCLLASATLLTLVGLGVLPGMVALAVASLAGMGIGI AGPSRDMLIKRAAPPGATGRVYGTVYSGLDLGFSLAAPVFGAMLDAQMNAGIFYGSAL ALVLSVVSAGFVGVGVAARRMQAVAQSAA" misc_feature <69005..69508 /locus_tag="Alide_0058" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(69612..70421) /locus_tag="Alide_0059" /db_xref="GeneID:10102082" CDS complement(69612..70421) /locus_tag="Alide_0059" /inference="protein motif:PFAM:PF00924" /note="PFAM: MscS Mechanosensitive ion channel; KEGG: bpy:Bphyt_0752 MscS mechanosensitive ion channel" /codon_start=1 /transl_table=11 /product="mscs mechanosensitive ion channel" /protein_id="YP_004124734.1" /db_xref="GI:319760797" /db_xref="InterPro:IPR006685" /db_xref="GeneID:10102082" /translation="MNTTDIWHFLSTQGTDFAIKLATAIAAWIIGRWLISLAVSLMGK LLQRGGKIDTTLAHYLKSITGVLLNIILILAILDIFGVKTTSFAALLAGAGLAIGAAW SGMLGNFAAGVFMQVLRPYKVGDFISAGGMVGTVTELGLFATTLTTPDNVMTVVGNGK IFGDNIQNFSALPVRRVDCVAKVANSVSPLDAIARLKPVISAIPNVATEPAPDIEILE FTPEGPKLCVRPYTHTDHYWQVYFDTNKAIVETFGAAGYPVPETPMAYRNA" misc_feature complement(69642..>70106) /locus_tag="Alide_0059" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" gene 70500..70595 /locus_tag="Alide_0060" /db_xref="GeneID:10102083" CDS 70500..70595 /locus_tag="Alide_0060" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124735.1" /db_xref="GI:319760798" /db_xref="GeneID:10102083" /translation="MAVPMSGPAATRHTVLQEKASNALCMGAISY" gene complement(70620..72044) /locus_tag="Alide_0061" /db_xref="GeneID:10102084" CDS complement(70620..72044) /locus_tag="Alide_0061" /inference="protein motif:PFAM:PF01565" /note="PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0040 fis family transcriptional regulator" /codon_start=1 /transl_table=11 /product="fad linked oxidase domain protein" /protein_id="YP_004124736.1" /db_xref="GI:319760799" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="InterPro:IPR016166" /db_xref="GeneID:10102084" /translation="MNAPAHAAQLQPRIDPRPVPQALLDALSQRFGAQLSTAQAVREQ HGRDEGSIQAPPPAAVVFAESTQDVQDAMRLAAQHEVPVIAYGAGSSLEGHLLAVQGG ISIDVGRMNKVLSIDADDLTVTVQPGITRKALNEAIKDTGLFFPIDPGADASIGGMAA TRASGTNAVRYGTMRENVLALEVVTANGDVIRTGTRAKKSSAGYDLTRLMVGSEGTLG IFTEVTVRLYPLPEAVSAAICSFPSIEAAVRTVIQTIQLGVPIARVELIDANSVRMVN AHSRLALREEPMLLMEFHGSAASVQEQAETVQGIASEFGGQAFEWASTPEERTRLWTA RHNAYFAAVQSRPGCKAISTDTCVPISRLADCLLASVDEADASGIPYFLVGHVGDGNF HFGYLINPAVPEERERAEQLNHRLVARALSMGGTCTGEHGVGVHKMGFLVDETGAGAV DMMRAIKRALDPKNILNPGKIFAL" misc_feature complement(70632..71990) /locus_tag="Alide_0061" /note="D-lactate dehydrogenase [cytochrome]; Region: PLN02805" /db_xref="CDD:178402" misc_feature complement(71463..71876) /locus_tag="Alide_0061" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene complement(72821..73033) /locus_tag="Alide_0062" /db_xref="GeneID:10102085" CDS complement(72821..73033) /locus_tag="Alide_0062" /inference="similar to AA sequence:KEGG:Shel_23880" /note="KEGG: shi:Shel_23880 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124737.1" /db_xref="GI:319760800" /db_xref="GeneID:10102085" /translation="MASKRRIRRNACTGKYRYSSAAEAQAAIAGLHRRKGYQGFMQPY RCSFCNGYHFGHPPKPKKPSGWGHYR" gene complement(73036..73581) /locus_tag="Alide_0063" /db_xref="GeneID:10102086" CDS complement(73036..73581) /locus_tag="Alide_0063" /inference="similar to AA sequence:KEGG:Rsph17025_2099" /note="KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein" /codon_start=1 /transl_table=11 /product="phage virion morphogenesis protein" /protein_id="YP_004124738.1" /db_xref="GI:319760801" /db_xref="GeneID:10102086" /translation="MPQIIELPDRSGLDYLHALVERGQNLQPLLKEIGEDQAEETKQR FATATDPDGNAWAPNSALTLANYSALFARKKDGSLTKRSAEKLAGKKPGTGETRMLGT TINYQVHGDDAVGVGSPMVYAGTFHYGAKSGEFGFGMYATRNGSFPIPWGDIPARRFL GMSQTGRENVVSLVRSYFLEG" misc_feature complement(73048..73542) /locus_tag="Alide_0063" /note="Phage virion morphogenesis family; Region: Phage_tail_S; cl02089" /db_xref="CDD:154737" gene complement(73688..74890) /locus_tag="Alide_0064" /db_xref="GeneID:10102087" CDS complement(73688..74890) /locus_tag="Alide_0064" /inference="protein motif:PFAM:PF04233" /note="PFAM: head morphogenesis protein SPP1 gp7; KEGG: bpt:Bpet4409 F protein (gpF) (protein GP30)" /codon_start=1 /transl_table=11 /product="head morphogenesis protein spp1 gp7" /protein_id="YP_004124739.1" /db_xref="GI:319760802" /db_xref="InterPro:IPR006528" /db_xref="GeneID:10102087" /translation="MADLGEAARSTVEGARQQFQEQIDFLRRKLNLPSETWRDIQRAA HDRAFVVAGATKADLLHDLRKAVEKAVEGESIADFRKRFSEAVAKHGWTGWTGEGSKA GEAWRTRVIYQTNLMTSYAAGRRAQLLDPDLVKRRPFWRYVHNDSVTHPRPHHKRWGD MRLTLRHDHPFWDTHFPPNGWGCKCRVVAVAAPGEGDATTPPDGWDETDPATSSPVGI DEGWNYAPGARADDDLRSFVQDKLIEYPPAISTALSRDVNRYINAEQLVPDFVREVLQ DRQRSDPLWLGFVERPDWIAEVTGADTRGYTLLLPAEAPRHVQSSHGFDGAGQRPATP EDFAQVEAVFNDPDQMRAGATSRHGNATLVATKAINGEVFRAVWEVLQGRRNRSLSLT SLVIKTSK" misc_feature complement(74327..74707) /locus_tag="Alide_0064" /note="Phage Mu protein F like protein; Region: Phage_Mu_F; cl10072" /db_xref="CDD:142383" gene complement(74883..76379) /locus_tag="Alide_0065" /db_xref="GeneID:10102088" CDS complement(74883..76379) /locus_tag="Alide_0065" /inference="protein motif:PFAM:PF06074" /note="PFAM: protein of unknown function DUF935; KEGG: rsc:RCFBP_11714 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124740.1" /db_xref="GI:319760803" /db_xref="InterPro:IPR009279" /db_xref="GeneID:10102088" /translation="MKQGIYVTPTEFVSFGEAKRRTSTLGEEVATRARSMDVAGFSFL LPNPDPILKRQGKDMRVYRDLRSDAHVGGCIRRRKASVKKLERRVVAGKAGARAVRRA EDLFSALNMDRVMNEVLDGVLYGWQPLELMWGYRAGALQPLDVVGKPGEWFTFDNEAQ LRFRSREHPLHGEALEPRKFLLARQEASYANPYGFADLSMCFWPTVFKRGGLKFWVTF TEKYGTPWLVGKQPRGTPGPEVEELLDKLEAMIQDAVAAIPDDSSIDVLEAGDKGASA ELYKELLMFCRSEVSIALLGQNQSTEASSTHASAVAGLEVAEAIRDGDARMVEATFNQ MLRWVTDLNEGENAPAPTVELYEEESVNTKLAERDSNLKSAGVNFTTQYWMRAYKLEK GDIAEQAAPVAVPGAPGVEFAEGTGPTVPAETLAALTAGASPVVELWLREMRRLVEAH RDPQRLQADLLEAFGDLPTGELAALMAAAFELAELQGRDRAAQEAGHG" misc_feature complement(74973..76361) /locus_tag="Alide_0065" /note="Protein of unknown function (DUF935); Region: DUF935; pfam06074" /db_xref="CDD:147953" misc_feature complement(<75372..>76073) /locus_tag="Alide_0065" /note="Mu-like prophage protein gp29 [Function unknown]; Region: COG4383" /db_xref="CDD:34090" gene complement(76376..77050) /locus_tag="Alide_0066" /db_xref="GeneID:10102089" CDS complement(76376..77050) /locus_tag="Alide_0066" /inference="similar to AA sequence:KEGG:RC1_1112" /note="KEGG: rce:RC1_1112 terminase large subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124741.1" /db_xref="GI:319760804" /db_xref="GeneID:10102089" /translation="MSRATDYTNAAQQRILHLQLALFGDVVHGYPPSKLAELLRVPAS AITRDLDNLRTIAPNEIETNLHQRIPFIAEMKNVPYNQQLQVLFAIGDALPRKCGMVI DSRGNGSYVGEAAHDKYGSVVQRLMPTEGWYRDNMPPYKAALEDGTILVPKHDGLLQG HRAIRLIRGVPRMPESTDKEIGHGDSTMACIYSHAAARMDWGPTHAASRPRRSRLDVS MEGYYE" misc_feature complement(76409..>76873) /locus_tag="Alide_0066" /note="Mu-like prophage FluMu protein gp28 [General function prediction only]; Region: COG4373" /db_xref="CDD:34082" gene complement(77062..77247) /locus_tag="Alide_0067" /db_xref="GeneID:10102090" CDS complement(77062..77247) /locus_tag="Alide_0067" /inference="similar to AA sequence:KEGG:BPSL1153" /note="KEGG: bps:BPSL1153 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124742.1" /db_xref="GI:319760805" /db_xref="GeneID:10102090" /translation="MDELDITYALSKQIPDMERGFTISTSYGDLVVEAHEAAAFVEAA NLLMFQRLAALRGSKQS" gene complement(77251..77721) /locus_tag="Alide_0068" /db_xref="GeneID:10102091" CDS complement(77251..77721) /locus_tag="Alide_0068" /inference="similar to AA sequence:KEGG:CV_2153" /note="KEGG: cvi:CV_2153 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124743.1" /db_xref="GI:319760806" /db_xref="GeneID:10102091" /translation="MIRRDWKRLRASSLVHAMRLCKEYAQAKHNLSVERIADRMGATH DTLYKWLATGRMPAILIPAYELACGCHYISDWLAASAGRLVVPMPTGRKAEGTELLDM NSSCAAALQLLTAFYQAPTEADTEATLAALRLHLEQVAYHHHNVAQYATPELEF" gene 77965..78771 /locus_tag="Alide_0069" /db_xref="GeneID:10102092" CDS 77965..78771 /locus_tag="Alide_0069" /inference="similar to AA sequence:KEGG:Aave_4097" /note="KEGG: aav:Aave_4097 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124744.1" /db_xref="GI:319760807" /db_xref="GeneID:10102092" /translation="MQTYRNWRVIWRCWRRRSQSQLGNPGSQSLQGRCCSRMLDHQQI ADALGLARRQLRVTAICYPAAIRVIGRTEVYRQIAEVRIDGKVKLTQPIGYAFPAGAV FSTALRQGDRFARVSRVYDQQSWDGVTWYDGLDPSKGAATATYDTTNYPIEVNNRGAI TERWALRFRSGGQVFDFIGQHLGQIASGNVNEDFSPMNIAAGAPYMTIRAGGWGSGWA AGNVLFPDTIGAEAPIDCVRCVQPGSPAGIDDRAWIVQRGDVGRDPESDF" gene 78805..79977 /locus_tag="Alide_0070" /db_xref="GeneID:10102093" CDS 78805..79977 /locus_tag="Alide_0070" /inference="similar to AA sequence:KEGG:Pnap_2245" /note="KEGG: pna:Pnap_2245 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124745.1" /db_xref="GI:319760808" /db_xref="GeneID:10102093" /translation="MATYPVKYITNTMRGAPQISGQAGTLQAALRTFLLTGFGLTTAL SVTVAGGIATASLNEGQTFAQGCVVLVDGGTPAQINGEARVLTSSNSAITWATTAPDG PATGTITIKVAPVGGWEELFPGTPNKSVFRSIDPQASGFCYRVDDSGTTQARVRGFES MTDIDTGTGPFPTDTQISGGGYTAKSYSEGATPVSYLLAADSRTVLIAISSYSSILAT YTVAPIRGFGDMLPLAPDGDPYSAAISCNSNSGTASFGAFGFYRSGAASIYCPRPRGG IGSAVRADTYPYVGNAATVSGADPKLGAFPSDVDGELKYCRQYIAAGENLTPRADVPG VLYIPQTGVGALIKSGDTLQGSGALAGRTLRAVGANSSADAEPVGAWLIDVTGPWR" gene 79986..80393 /locus_tag="Alide_0071" /db_xref="GeneID:10102094" CDS 79986..80393 /locus_tag="Alide_0071" /inference="similar to AA sequence:KEGG:sce2651" /note="KEGG: scl:sce2651 carbohydrate ABC transporter" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124746.1" /db_xref="GI:319760809" /db_xref="GeneID:10102094" /translation="MAALAYIASFVGLAGAVTPSTAPPRFTAATAIGLLSNQGGRNWR FFGDTSGTVLNNNRVMVKPSATAPEVPFAGARVRLHRLTDGYCAWEGISDAAGYYWPR GLEVGLLYYPVAIDLTGTHECDAAGPVIAVRAP" gene 80393..80824 /locus_tag="Alide_0072" /db_xref="GeneID:10102095" CDS 80393..80824 /locus_tag="Alide_0072" /inference="similar to AA sequence:KEGG:Aave_4094" /note="KEGG: aav:Aave_4094 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124747.1" /db_xref="GI:319760810" /db_xref="InterPro:IPR013838" /db_xref="InterPro:IPR016160" /db_xref="GeneID:10102095" /translation="MRDLVLTQEARAARNAASIARADEGPGNSAIKLYTAQGGTLVAV RQLGKPCGSVREADGRMVLVPGAQNDLVLATGAANWGEWCAGDGVALYVGPVTDEHGM ASDGAGGLVDTGDVGPWVLEGTRGTQLYEGGLVLLRSAAIG" gene 80835..82826 /locus_tag="Alide_0073" /db_xref="GeneID:10102096" CDS 80835..82826 /locus_tag="Alide_0073" /inference="similar to AA sequence:KEGG:Aave_4093" /note="KEGG: aav:Aave_4093 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124748.1" /db_xref="GI:319760811" /db_xref="GeneID:10102096" /translation="MADGRLTFLRPLDPDRGGRLVLGDAPEGVPPQQLTGLVFSRPAS GSGKLTFGKWTEGGEQQIPDAGLSIDAGIAGEGSASVRLRAAALVVVDAGIAGEGAAD VRFGWDANVSRGGLRAELQALWQQRARPIAAGLATAWQQAAPLRVGAAVRWQDAAPVR GSLAAHWQEAERLRAAVVARWQEGERLRAGVDLQWQEAVRLRAAVVARWQEGERRRSA LDARWQETLRLRAALSTGWQQAGAARALLVSGWGHGRPVRVHLRTHWQEAMRPRAGVS RLPKPPEPRPPCYDPARLGLLVLDTAFTGDGRLLFVCGSAGPTLPPAGIVVPARRSYV VINSIEIRRADDLAGDPLPSESFNMQLDRQSWTWTFSAAFHASARDAVAPGVGGQPVE LEVRINGQPFRLQAERIGRSRRFPEHLVTASGRGLAAVLDAPVQTFSAALDRTAHQLM TDVLTVNGVGYGWAVDFQLSDWLVPGGIWMHQGTPISALSEIAGAVGGYLQPHDTDAI VRVLPLWPEPWWRWDTLAPDIELPDGIAEITETEIIDMPAYDRIFVAGEAGGIQADLT RTGLPGLVLKQPMAVHPLITTIGAAKQRATAELAESGRMLKHKMTLPVLPATGVIKPG TVLRYVDDAQALRLGLVRATAISQQFPVLTQSLEIDSHA" gene 82819..83040 /locus_tag="Alide_0074" /db_xref="GeneID:10102097" CDS 82819..83040 /locus_tag="Alide_0074" /inference="similar to AA sequence:KEGG:Pnap_2241" /note="KEGG: pna:Pnap_2241 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124749.1" /db_xref="GI:319760812" /db_xref="GeneID:10102097" /translation="MPNLYQQLRELLAPGRVQIGEVVAYTDGVATIDLPGAGQVRARG EAAVGGKVFVQDGVIQGPAPDLPVFVDVI" gene 83191..83982 /locus_tag="Alide_0075" /db_xref="GeneID:10102098" CDS 83191..83982 /locus_tag="Alide_0075" /inference="protein motif:PFAM:PF02086" /note="PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: aav:Aave_4108 D12 class N6 adenine-specific DNA methyltransferase" /codon_start=1 /transl_table=11 /product="d12 class n6 adenine-specific DNA methyltransferase" /protein_id="YP_004124750.1" /db_xref="GI:319760813" /db_xref="GO:0009007" /db_xref="InterPro:IPR002294" /db_xref="InterPro:IPR012327" /db_xref="GeneID:10102098" /translation="MANPIVPWIGGKRRLVDLLLSRFPPHECYCEVFAGGAAVFFARN PASVEVLNDVNGDLVNLYRVVTHHLEEFVRQFKWALTSRQVFKWLQETRPETLTDVQR AARFFYLQQQSFGGKVAGQTWGTATTAPAINLLRIEENLSTAHLRLAGGVYIEQLDWA ACIDRYDRAHTLFYLDPPYWETEGYGVPFPWEQYVAMAAKLKAIKGKAVVSINDHPAI RECFAGYDMEALKLDYTVGGGANRVERGELVIYSWDRLAEPAGLF" misc_feature 83191..83940 /locus_tag="Alide_0075" /note="D12 class N6 adenine-specific DNA methyltransferase; Region: MethyltransfD12; cl00408" /db_xref="CDD:193804" gene complement(84050..84145) /locus_tag="Alide_0076" /pseudo /db_xref="GeneID:10102099" gene 84303..84878 /locus_tag="Alide_0077" /db_xref="GeneID:10102100" CDS 84303..84878 /locus_tag="Alide_0077" /EC_number="2.5.1.17" /inference="protein motif:TFAM:TIGR00636" /note="TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: dia:Dtpsy_0063 ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase" /codon_start=1 /transl_table=11 /product="ATP/cobalamin adenosyltransferase" /protein_id="YP_004124751.1" /db_xref="GI:319760814" /db_xref="GO:0005524" /db_xref="GO:0008817" /db_xref="InterPro:IPR002779" /db_xref="InterPro:IPR017858" /db_xref="GeneID:10102100" /translation="MGNRLTQIATRTGDDGTTGLGDNTRVSKASGRPHAMGDVDELNS HIGLLLCEPMPQDVRELLIDVQHQLFNLGGELCMPGYELLKDDALLQLDNALARYNAE LPRLQEFILPAGTRAACQAHVCRTVARRAERAVVALQQAETMRAAPRQYLNRLSDLLF VLSRVLNRMDGGNEVYWKSERLARQADDATE" misc_feature 84369..84803 /locus_tag="Alide_0077" /note="Cobalamin adenosyltransferase; Region: Cob_adeno_trans; cl00920" /db_xref="CDD:193973" gene complement(84939..85361) /locus_tag="Alide_0078" /db_xref="GeneID:10102101" CDS complement(84939..85361) /locus_tag="Alide_0078" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0044 hypothetical protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004124752.1" /db_xref="GI:319760815" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10102101" /translation="MSIWKTPISLASVNAHTAHTAISHLGIEFLEVGDDFLRARVPVD ERTRQPYGILHGGVSVVLAETLGSMGAANACPPDHRVVGLDINANHIRATSSGWVTGT ARPVHIGKSTQVWQIDMVNDEGQLTCVSRITMAVLQPR" sig_peptide complement(85299..85361) /locus_tag="Alide_0078" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.668) with cleavage site probability 0.597 at residue 21" misc_feature complement(84954..85292) /locus_tag="Alide_0078" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature complement(order(85083..85094,85113..85115,85200..85202)) /locus_tag="Alide_0078" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(85092..85094,85098..85112,85182..85184, 85191..85193,85197..85199)) /locus_tag="Alide_0078" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(85113..85115,85155..85160,85167..85172, 85194..85196)) /locus_tag="Alide_0078" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(85444..86910) /locus_tag="Alide_0079" /db_xref="GeneID:10102102" CDS complement(85444..86910) /locus_tag="Alide_0079" /EC_number="3.1.2.1" /inference="protein motif:TFAM:TIGR03458" /note="TIGRFAM: succinate CoA transferase; KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; PFAM: acetyl-CoA hydrolase/transferase" /codon_start=1 /transl_table=11 /product="succinate CoA transferase" /protein_id="YP_004124753.1" /db_xref="GI:319760816" /db_xref="InterPro:IPR003702" /db_xref="InterPro:IPR017821" /db_xref="GeneID:10102102" /translation="MSAAEAAALIPAGANVGMSGFTGSGHPKLVPQALATRIEAEHAA GRPFQVNVWTGASTAPELDGALARVGGMRQRLPFQSDPVCRDRINAGEVDYLDIHLSH VAQQAWFGFLGPLHVAVIEVLGILPDGRLIPSAAVGNNKTWLDIADKVILEVNSLPPA EMEGMHDIYYGTAIPPRRLPINLTQPIERIGEPYLRVDPAKVIAVVPTHHGDRDTAFA QPDAVSNQIAAHIIDFLAHEVKVGRLPRNMLPLQSGVGNVANAVLAGLLDGPFDDLLG FTEVLQDGMLELIKRGKMAAASATAISLSRPALQEFTDNIAFYRERIVLRPQEISNHP ELVRRLGVIAMNAMIEADIYGNINSTHLMGSGMMNGIGGSGDFARNGYLSFFVTPSVA KGGAVSCIVPMVSHVDHTEHDTQIIVTEQGLADLRGLSPRQRAQVIIDKCAHPDWRPL LQDYFDRARSQGAQHTPHLLGEALSWHQRCLETGSMRA" misc_feature complement(85456..86910) /locus_tag="Alide_0079" /note="succinate CoA transferases; Region: YgfH_subfam; TIGR03458" /db_xref="CDD:163273" misc_feature complement(86290..86865) /locus_tag="Alide_0079" /note="Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550" /db_xref="CDD:111448" gene 87122..87856 /locus_tag="Alide_0080" /db_xref="GeneID:10102103" CDS 87122..87856 /locus_tag="Alide_0080" /inference="similar to AA sequence:KEGG:Dtpsy_0067" /note="KEGG: dia:Dtpsy_0067 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124754.1" /db_xref="GI:319760817" /db_xref="GeneID:10102103" /translation="MPFTPLCPSCRQPADVRRFAATGGGTLELDLCFACQGMWFDPQE NTRLAPAAVLQLFELLHDRRGDAHRPLSDRLQCPRCATALVKGYDVAQGGRYVTYRCA ARHGRFSTFGAFMVEKGFVRHLSKLEIEALARRVGTITCTSCGGAVDIRNDHACPYCR SALSLLDPQAVDKALARHGRAAQQSAAQADERSPDALADALIALERNRSREERERQRE RLEGRQSDQFDLVAAGIEFVWSLLRR" gene 87911..88816 /locus_tag="Alide_0081" /db_xref="GeneID:10102104" CDS 87911..88816 /locus_tag="Alide_0081" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_5369 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124755.1" /db_xref="GI:319760818" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102104" /translation="MDLISLEVLVAAIEEKSLSAAAERMHMVTSAASKRIAELERREA TVLLRRHGRGVVPTPAGAMLYQRAKSILRQIAQARGALREYAASGVPHVRLAANASAI QQFLPSEIGAFSRREPAVRVDLTEAFSYDVPRLVADGDADVGIYHAAYPAPGVLSRPY RRDRVALVVPAGHPLEARGQLPLEDALEYDFLGYFPRHSLSEFLALAGNTLTRPIRVR AQVSNPGARCAMVREGLGLAIVPLGIARNYARLLGLSILTLTDEWATRQLWVCARQPA QLPPEAALLWHFFLEHSGEADSASS" misc_feature 87911..88795 /locus_tag="Alide_0081" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 87926..88093 /locus_tag="Alide_0081" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 88184..88765 /locus_tag="Alide_0081" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(88229..88234,88238..88243,88250..88252,88262..88264, 88268..88288,88562..88579,88595..88600,88604..88609) /locus_tag="Alide_0081" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 88941..89951 /locus_tag="Alide_0082" /db_xref="GeneID:10102105" CDS 88941..89951 /locus_tag="Alide_0082" /inference="similar to AA sequence:KEGG:Reut_B4598" /note="KEGG: reu:Reut_B4598 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124756.1" /db_xref="GI:319760819" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102105" /translation="MFGRANRRKFFQSTTAGAISAAAFGSALTPHWAWAQSPDGYPSR AIRVVVPFTPGGGTDVVGRALMEALSRELGQAIIVDNKPGGGTVIGSDLVAKAPADGY TLLLTTSALAINDSLVPKLPYKTARDITEVGLICTGPNVFVVRPESPYRSVADLIQAA KARPGRLTYGSSGNGSSVHLAAELFKLMAQVDITHVPYRGAGPAYTDLMGGQIDFVVG TAGGVAKLVEAGKMRAIAVTSEKRTSAYKDIPTVAETLPGYAADVWYGIFAPAGTPPD VIAKLNAALAKAANAPAYKQRLSNEGLTVAVNSPAEMTRFMRAEEARWRKVVVEGKVS VD" sig_peptide 88941..89048 /locus_tag="Alide_0082" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.975 at residue 36" misc_feature 89049..89924 /locus_tag="Alide_0082" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 89121..89930 /locus_tag="Alide_0082" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 90000..90806 /locus_tag="Alide_0083" /db_xref="GeneID:10102106" CDS 90000..90806 /locus_tag="Alide_0083" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB2766 short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004124757.1" /db_xref="GI:319760820" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10102106" /translation="MTTTSQRLAGKVAIIVGAGQQPGETVGNGRAVAERFAEEGARLL LVDIQPESLKDTEDKLRSMGAEVASVLADITREDDCARIAAQCVATFGRIDVLHNNVG RSKGDKSTVELGADMWDEIMAMNLKGMFMTCKHVLPQMIAQKEGSIINISSTSSLSAR PTVAYKTSKGAVNTFTQHLAYENAAHGVRANAILPGLIDTPMAIERRARERGVSREIV RAEREAMVPMKRMGTAWDVAHAAVFLASDESRYVTGVLLPVDGGLVCKRG" misc_feature 90015..90791 /locus_tag="Alide_0083" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 90036..90779 /locus_tag="Alide_0083" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature order(90048..90050,90054..90059,90078..90083,90138..90146, 90213..90221,90297..90305,90369..90371,90450..90458, 90492..90494,90504..90506,90582..90593,90597..90602) /locus_tag="Alide_0083" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature order(90372..90374,90456..90458,90492..90494,90504..90506) /locus_tag="Alide_0083" /note="active site" /db_xref="CDD:187544" gene 90808..91569 /locus_tag="Alide_0084" /db_xref="GeneID:10102107" CDS 90808..91569 /locus_tag="Alide_0084" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_0736 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004124758.1" /db_xref="GI:319760821" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10102107" /translation="MNLRLQGSHVLVTGASRGIGKACVRAFLDEGATVSALARTQQTL EAMAAQMQAGDRLRVFCADLQDAAQAQEAVRRIEAQGGPIQVLVNCAGAAKRTPFAQL QPADWHAGMQAKFYSYMHVLTPVVQRMAGRGAGAVVNVVGAGGKRANPVHLAGGAANA ALMLAGTGLAAAYAPSGVRINTINPGQVRTERLQAQRDAQAAAGGAPLAEPPLGRPAE PEEIAALAVFLASPRASYVSGAVIAMDGVALPTVV" misc_feature 90817..91545 /locus_tag="Alide_0084" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 90835..91545 /locus_tag="Alide_0084" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(90847..90849,90853..90858,90862..90864,90919..90927, 91075..91083,91225..91233,91270..91272,91282..91284, 91360..91371) /locus_tag="Alide_0084" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(91147..91149,91231..91233,91270..91272,91282..91284) /locus_tag="Alide_0084" /note="active site" /db_xref="CDD:187535" gene 91601..92116 /locus_tag="Alide_0085" /db_xref="GeneID:10102108" CDS 91601..92116 /locus_tag="Alide_0085" /inference="protein motif:PFAM:PF02627" /note="PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2144 carboxymuconolactone decarboxylase" /codon_start=1 /transl_table=11 /product="carboxymuconolactone decarboxylase" /protein_id="YP_004124759.1" /db_xref="GI:319760822" /db_xref="InterPro:IPR003779" /db_xref="GeneID:10102108" /translation="MRIAPITPGTRPELAELEATITRQRGRVSPLYQVLLNSPAMAHG WEQMLTAVRRHNSLPDLDRELLIVRVAVLNHARFEYEAHVPIALQAGASSQMIADVSG ADAIGASVQGGLRALVELADAMTSRIDVPDALYAQAAAYYTQQQMVDAMVTIGAYNMV SRFLEAVQIGH" misc_feature 91634..92107 /locus_tag="Alide_0085" /note="Uncharacterized conserved protein [Function unknown]; Region: COG2128" /db_xref="CDD:32311" misc_feature 91715..91951 /locus_tag="Alide_0085" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene complement(92123..93409) /locus_tag="Alide_0086" /db_xref="GeneID:10102109" CDS complement(92123..93409) /locus_tag="Alide_0086" /inference="protein motif:TFAM:TIGR00801" /note="KEGG: ajs:Ajs_0048 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease" /codon_start=1 /transl_table=11 /product="uracil-xanthine permease" /protein_id="YP_004124760.1" /db_xref="GI:319760823" /db_xref="GO:0005215" /db_xref="InterPro:IPR006042" /db_xref="InterPro:IPR006043" /db_xref="GeneID:10102109" /translation="MGMFQWNERPAEVLQGGGVIGPDERLPWGQTGLMGIQHVIAMFG STVLAPILMGFDPNLAVFMSGIGTLIFFLVTGGKVPSYLGSSFAFIGVVIAATAYAGK GANANIGVALGGIIACGAVYAAVGVVVHLVGTGWIERFMPPVVTGAVVAVIGLNLAAI PIKNMAASNFDSWMQALTFVCVALVAVFTRGMVQRLLILVGLILASIAYALFTNGMGL GKPVDLSGVMAAPWFGVPQFHAPVFSAPAMLLIVPVVIILVAENLGHIKAVTAMTGKN LDQYMGRAFIGDGVATMVSGVAGGTGVTTYAENIGVMAATRIYSTAVFLVAALIAVLL GFSPKFGALIQAIPLPVMGGVSIVVFGLIAIAGAKIWVDNRVDFSQNKNLIVAAITLI LGTGEFTLKFGDFALGGIGTATFGAIVLYALLNRGR" misc_feature complement(92132..93361) /locus_tag="Alide_0086" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" misc_feature complement(92210..93325) /locus_tag="Alide_0086" /note="Permease family; Region: Xan_ur_permease; pfam00860" /db_xref="CDD:189745" gene 93561..94271 /locus_tag="Alide_0087" /db_xref="GeneID:10102110" CDS 93561..94271 /locus_tag="Alide_0087" /inference="protein motif:TFAM:TIGR01444" /note="TIGRFAM: methyltransferase FkbM family; KEGG: sna:Snas_6312 methyltransferase FkbM family" /codon_start=1 /transl_table=11 /product="methyltransferase fkbm family" /protein_id="YP_004124761.1" /db_xref="GI:319760824" /db_xref="InterPro:IPR006342" /db_xref="GeneID:10102110" /translation="MKALIKALAHRAGLDVMSLAYSRDYIYDRFLPGALKGHGIQAVI DIGANIGGYGELLRRVGFAGDIHSFEPCSQPFGELARKAAGDPRWHVYQKAASDRSGT AQIHTMVGSELNSFLSLRESSRKMTETGTEDVETVTLDGLDLPIDWSRTFVKIDTQGH DVKVMSGGRNVLRQAALIQSEVSFLPIYQGMPAFDEAIASLKELGFDVIGMFPVSRDS LGRVQEFDCLCVNRNLPR" misc_feature 93687..94109 /locus_tag="Alide_0087" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(94398..95666) /locus_tag="Alide_0088" /db_xref="GeneID:10102111" CDS complement(94398..95666) /locus_tag="Alide_0088" /inference="protein motif:TFAM:TIGR01988" /note="KEGG: ajs:Ajs_0052 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding" /codon_start=1 /transl_table=11 /product="ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family" /protein_id="YP_004124762.1" /db_xref="GI:319760825" /db_xref="GO:0005215" /db_xref="GO:0050660" /db_xref="InterPro:IPR002938" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR010971" /db_xref="GeneID:10102111" /translation="MPPQQTNTHSSSDVLIVGAGPAGLSLAASLAQAGMQVTVLEQQP ASVLAAPPPDGREIALTHPSVATLQRLGSWQRLAAHEVGLLREAQVHDGPVGRRGAMQ LHAGGSGVDHLGWIVPNYALRRTAYEVAAQQPDVRIVTEARVARVAVTPAHAELEYTD ARQGGQGAERLQAPLLVAADSRFSATRRQLGIGAAMHDFGRTVIVCRLRHELPHHEVA HECFGYEQTLAILPLPNDPIDGAPMCSAVVTTGAAQAQQLMALPPEEYAARVQAQFQN RLGAMRLVGERHAYPLVAVYAHRFAGPRCALLGDAAVGMHPVTAHGYNLGLAGVEGLT RAVAGAWARGADIGAASVLAPYAREHHRHAWPLYQGTNAIVRLYTDDRPLPRLLRQAV LAGSNRLPPLKGLIVSQLTGRRPAWPTAAP" misc_feature complement(94440..95648) /locus_tag="Alide_0088" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(94422..95636) /locus_tag="Alide_0088" /note="hypothetical protein; Provisional; Region: PRK09126" /db_xref="CDD:181663" gene 95836..97911 /locus_tag="Alide_0089" /db_xref="GeneID:10102112" CDS 95836..97911 /locus_tag="Alide_0089" /inference="protein motif:TFAM:TIGR01217" /note="KEGG: dia:Dtpsy_0074 acetoacetyl-CoA synthetase; TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="acetoacetyl-CoA synthase" /protein_id="YP_004124763.1" /db_xref="GI:319760826" /db_xref="GO:0030729" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR005914" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10102112" /translation="METDSPPPYVPQIRLYQDWLQARRGLRFDGYDALWRWSVTELDA FWQSVWDYFDLQSPTPHDAVLARNVMPGARWFPGAQVNYARQVLRHVDAAHAAGQPAL VARNERGQHRELSWPALRRQVAALALHLKAQGVGPGDRVAAYLPNIPETIVAFLACAS IGAVWSVCAPDMGTNAVLDRFRQIEPKVLFAVDGVSYGGRDHDRCAVLAELRAQLPTL RHVVLVNNLDATKTIADTACYASITARKDAETAAFEPLWLPFDHPLWIVYSSGTTGMP KPIVHGHGGMLLVMLQLAVLHNDIGCSYAPNSFGERFHWYSSTGWIMWNAQVGGLLGG TTCVLYDGNPGGSKERPDWGVLWRMAAETGVTFFGAGAAFYGNCMKAGITPAQCGDLS AIRALGSTGSPLPAEVQQWGSDFMAVAGVPRVWWANISGGTDFAGAFLGGHRELPQTP GRMQCRMLGAAVEAWDEQGRPVLDAVGELVCTQPIPSMPLYLWGDADGARYRASYFDM YPPGHGRRPGGGDLGPEAGAVWRHGDWIEIGSAAHPGCLIYGRSDATINRHGLRMGTS EIYSAVEALPEVLDSLVVDLEYLGRESWMPLFVVLREGVALDDALRGRIDDAIRAALS PRFVPDDIFAVAEVPRTLSGKKQELPIKKLLLGQPLAKVVNRDAMANPGCLDWYVDFA ARRGAAAAA" misc_feature 95845..97878 /locus_tag="Alide_0089" /note="acetoacetyl-CoA synthetase; Provisional; Region: PRK03584" /db_xref="CDD:179600" misc_feature 95917..96141 /locus_tag="Alide_0089" /note="Domain of unknown function (DUF3448); Region: DUF3448; pfam11930" /db_xref="CDD:192884" misc_feature 96268..97770 /locus_tag="Alide_0089" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(97943..98872) /locus_tag="Alide_0090" /db_xref="GeneID:10102113" CDS complement(97943..98872) /locus_tag="Alide_0090" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0055 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124764.1" /db_xref="GI:319760827" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102113" /translation="MNLRQLSQFVTLAETGNFHRAAERLHMAQPPLSVSIRKLEEELG SALFARTRTGVALTPAGQAMLDDARRTLLHAQQCRQAVLDTREGTGGRLRLGIIGSAT YALLPRLIPSLRARYPQITLELSEATSSEILEGLVSRRFDAGLLRFPLLDASGFDLTP LDRDDFVLAVAETSPLARREAIALHEAAHEPFIMYPRSKVPGLLALAMMRCQFSGFAP QVAQEAAQVQTIMSLVASGLGVGLVAGVARQVVPRGVKCLRLTDNPPGFHVSIALARL AGNTSRVVQRFAEHALECAGAPHVEGGGGGGPG" misc_feature complement(98687..98866) /locus_tag="Alide_0090" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(98000..98575) /locus_tag="Alide_0090" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature complement(order(98111..98113,98165..98170,98174..98179, 98195..98200,98255..98260,98360..98362,98495..98497, 98501..98503,98507..98509,98531..98533,98540..98545, 98549..98554,98561..98563)) /locus_tag="Alide_0090" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature complement(order(98264..98266,98285..98290,98432..98434)) /locus_tag="Alide_0090" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene 98988..99974 /locus_tag="Alide_0091" /db_xref="GeneID:10102114" CDS 98988..99974 /locus_tag="Alide_0091" /inference="similar to AA sequence:KEGG:Ajs_0056" /note="KEGG: ajs:Ajs_0056 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124765.1" /db_xref="GI:319760828" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102114" /translation="MSLHRRTALRALLGSGLAALGAATAPAARAQAFPSRTIKFVVPF GPGSGTDTSARYFAKKLQDLTGQAVVVENKPGANGFLAVKQVLAAPADGYTVFIGSNS TLAVNAALFKELPYDPVKDFSPLTMMMRSPAMLVVPPAAPYGDLKGLLAHARANPGKV NFGAGSAGYQLMGELLNDMAGVQTVHVPFKSAGETMTAVASGTVDYAFAEVTAVLELA RGARLKILAVAADKRVGNAPEVPTMGEAGLSGFEAYTWVGAMVPARTPAAETARLAEL FTAISKMDETRAFYERLGAAPMTGGPAQMHDFQRKEIALWKRIVSQAKVPLQ" sig_peptide 98988..99080 /locus_tag="Alide_0091" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.943 at residue 31" misc_feature 99096..99962 /locus_tag="Alide_0091" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 99147..99956 /locus_tag="Alide_0091" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 100000..101157 /locus_tag="Alide_0092" /db_xref="GeneID:10102115" CDS 100000..101157 /locus_tag="Alide_0092" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124766.1" /db_xref="GI:319760829" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102115" /translation="MSTLDSLALTRIPPEDEALRAEVRAFLAEAIKTLPAHVRARSWG GYSTELSRKLGERGWIGVTLPREYGGGGRSAFTRYVLVEEYLNCGAPVGSHWIADRQS APLILKYGTEAQKRFYIPRVCRGEAFFCIGMSEPNSGSDLASVKTRAVPNDKGFLLNG QKIWTTNAHHCQYMIALVRTSGAPEDRHKGLSQVIVDLQLPGVTVRPIEDLSGDSHFC EVFFDNVQLAPDALIGAEGQGWEQVTAELAFERSGPERLFSSIVLFDQWLDWVRTPRG RTAPAQRLAGKVLTQLAPLRAMSVAIQEKLVRGESPIVEAALVKELGTTLEQFIPAAI ADDLFAREAEDVPVELLMTLKYVTEASPSFSLRGGTRDILRGMIARGLGLR" misc_feature 100033..101154 /locus_tag="Alide_0092" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 100039..101148 /locus_tag="Alide_0092" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(100300..100302,100390..100392,100396..100398, 100489..100491,100495..100497,101095..101103, 101107..101109,101113..101115) /locus_tag="Alide_0092" /note="active site" /db_xref="CDD:173838" gene 101177..102202 /locus_tag="Alide_0093" /db_xref="GeneID:10102116" CDS 101177..102202 /locus_tag="Alide_0093" /inference="protein motif:PFAM:PF00441" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0062 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124767.1" /db_xref="GI:319760830" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="GeneID:10102116" /translation="MDNDLFADAARQVLADQCTPAVVRAIEAGGRAAPEAAALWAQLE ATGLADALLPESQGGAGLALSQVFGVLEQCGAHALPLPLGETMVARALLAAAGVDRPA GGIALARGERTPEGGLRCALVRGGRVAHAVLAQAGDAWHLLGVAGAQEAPQALALDAA LAWTPAQLQAAPAVAVDAALDLRTLQAAVLAPQMAGAAMHVFQRTLQYANERQQFGRP IGKFQAIQHQLAVMSEHVFAARMAAQLGCSGAGVRPDRLRVATAKARCSEAALAVSEF AHSIHGAIGFTAEYDLQLFTRRLHAWRQAAGSESYWHDVAGQALLEHQGLTLDVVRRI TDVESVL" misc_feature <101738..102100 /locus_tag="Alide_0093" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" gene 102308..103096 /locus_tag="Alide_0094" /db_xref="GeneID:10102117" CDS 102308..103096 /locus_tag="Alide_0094" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0063 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004124768.1" /db_xref="GI:319760831" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10102117" /translation="MAFLTLERDGAILTVTMNQPETRNALTGNTAVQEFVQLCDDVRK DAGVKVIILTGAGPIFSSGGNVKDMKRFFDDALTPDLIREEYRQGIQRIPQALYNLDV PVICAVNGPAIGAGLDLTCMCDIRIAAETATFAESFVRVGIVPGDGGAWLLPRAVGMA KAAEMAFTGEAINAQEALACGLVSRVVPAGELLPTARALADKIAANPGAVMRMTKRLL REGQLATLDSLLELSAGCQAIAHKTADHREAVTAFIEKRAPRFQ" misc_feature 102308..103093 /locus_tag="Alide_0094" /note="enoyl-CoA hydratase; Provisional; Region: PRK09245" /db_xref="CDD:181723" misc_feature 102317..102916 /locus_tag="Alide_0094" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(102374..102376,102380..102382,102479..102481, 102491..102505,102638..102640,102644..102652, 102716..102721,102728..102730) /locus_tag="Alide_0094" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(102497..102499,102650..102652) /locus_tag="Alide_0094" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(102590..102592,102614..102616,102677..102688, 102722..102733,102749..102751,102755..102763, 102767..102772,102785..102790,102794..102799, 102803..102808,102815..102817,102848..102850, 102857..102859,102902..102904,102911..102916) /locus_tag="Alide_0094" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 103126..103749 /locus_tag="Alide_0095" /db_xref="GeneID:10102118" CDS 103126..103749 /locus_tag="Alide_0095" /inference="protein motif:TFAM:TIGR00473" /note="manually curated; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; KEGG: dia:Dtpsy_0083 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase" /codon_start=1 /transl_table=11 /product="cdp-diacylglycerol/serine o-phosphatidyltransferase" /protein_id="YP_004124769.1" /db_xref="GI:319760832" /db_xref="GO:0003882" /db_xref="InterPro:IPR000462" /db_xref="InterPro:IPR004533" /db_xref="GeneID:10102118" /translation="MASPHKRFSMIREFHLADWFTLGNAVCGVGALFSSMTYLETADL RHVYFACALVLAALVFDVLDGRIARWRQKSSAMGRELDSLADVISFGVAPAIIAYACG MQGLYDRIVLAFFVACGVSRLARFNITAETLAEGPSGKVRYFEGTPIPTSIVLVGLLA LAASTGAVREHLWLGKMMIGGFTLHPLVLLFALSGSLMISRIRIPKL" misc_feature <103318..103740 /locus_tag="Alide_0095" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene 103858..106059 /locus_tag="Alide_0096" /db_xref="GeneID:10102119" CDS 103858..106059 /locus_tag="Alide_0096" /inference="protein motif:TFAM:TIGR01783" /note="manually curated; TIGRFAM: TonB-dependent siderophore receptor; KEGG: neu:NE2433 TonB-dependent receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug" /codon_start=1 /transl_table=11 /product="tonb-dependent siderophore receptor" /protein_id="YP_004124770.1" /db_xref="GI:319760833" /db_xref="GO:0004872" /db_xref="GO:0005506" /db_xref="GO:0015343" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR010105" /db_xref="InterPro:IPR012910" /db_xref="GeneID:10102119" /translation="MPHCTPSRASSAPAPVLGACAVAIQVMLGSASLSGAVPAAAQSA GGGTAAALPEVTVTQRREAIDEAPPAYAGGQVGSGARLGILGNAPVLDTPFSVTSYTA QAIENEQARSVADVIAMDPSVRMASARSNINEDITIRGFAVPSGDFALNGMFGLTPYW RAPLEAVERVEVLKGPSAALFGMAPGGSVGGVVNLVSKRAGAQPLTRFTAGVMSDSVA GGHLDVGRRFGPDGALGARVNLMRRQGDTNIDHQSTRESLASLGLDLRQSALRASLDL LWQEQRIDNVVRQFQLAPGLAAIPRAPDNSIAYPGYGWTDGHDGSALFKAEYDINDTL TAYAGLGQRKLNWGSMAGNPVILNTAGDYSYFGGWQRMGVDSKSAEAGVRASFRTGGM AHNAALAFTRLDQDQTLGFYTGFPGGMSNLYAGGRQPTPSIAGIDNPLRPYQDSKLTS VALADTVTLLEDRLLVTLGLRHQKVQGQSYNYMTGAASGPYYDKSATTPLAGVVFKLR PNWSLYASYVEGLSRGETAPVSAAIANPGEAMPPYRSKQKEIGAKFDHGGFLATVGLF ELTRPSAAVSGNVFGVNGEQRNRGLEASVAGEVARGLRLLGGASFMDAELSRSANAAL VGKRAIGVPRSQLNLGAEWDAGFAPGLTLTGRMVHTAKTYADAANTLRVAGWTRWDAG ARYATRIGGKPVTFRLNVENLLDKNYYGIATAGYLFLGSPRTVSLSASVDL" misc_feature 104131..106053 /locus_tag="Alide_0096" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:162535" misc_feature 104143..106053 /locus_tag="Alide_0096" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(104143..104172,104200..104229,104263..104280, 104299..104322,104347..104379,104422..104448) /locus_tag="Alide_0096" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(104890..104892,104971..104973) /locus_tag="Alide_0096" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 106062..107231 /locus_tag="Alide_0097" /db_xref="GeneID:10102120" CDS 106062..107231 /locus_tag="Alide_0097" /inference="similar to AA sequence:KEGG:NE2432" /note="KEGG: neu:NE2432 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124771.1" /db_xref="GI:319760834" /db_xref="GeneID:10102120" /translation="MSTRAWTWVHKWSSLVCTAFMLLLCLTGLPLIFHEEIEHLPGAV EAAPMPEGTPEASMDRIAQAARERRPDDVIRYMFWDPEEHPNLTYVSMASRVDAPPDE NNAVVVDSRTAQVLDEPRTNEGFMYVMLKLHVDMFAGLPGMLFLGFMGLLMVVAIVSG VVLYYPFMRRLRFGALRTRRSARIRWLDWHNLLGIVTVVWLTVVGITGSINTLDRIIL AIWQQDQMAEMTAPYKGLPPVTRPAHLQKSIEAARAAAPDMAVRLVAFPGTAFSSPHH YTFFLKGGTPVTSRLLKPALVDAQTGVLTASRDMPWYVKTLFLSQPLHFGDYGGLPLK ILWTLLDLAAIVVLGSGLYLWLRKPRAAPVPGAEAEPDAEPDAELAPVAAVEAKT" misc_feature 106071..107135 /locus_tag="Alide_0097" /note="Uncharacterized iron-regulated membrane protein [Function unknown]; Region: PiuB; COG3182" /db_xref="CDD:32995" gene 107228..107437 /locus_tag="Alide_0098" /db_xref="GeneID:10102121" CDS 107228..107437 /locus_tag="Alide_0098" /inference="similar to AA sequence:KEGG:Rpal_2080" /note="KEGG: rpt:Rpal_2080 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124772.1" /db_xref="GI:319760835" /db_xref="GeneID:10102121" /translation="MTMPTGPRRDARTDEAQPAAEIFRVPILLGLATAVGLVSALVGD GVWDALSWLALAAPAAAVAWAWRAR" gene 107604..108365 /locus_tag="Alide_0099" /db_xref="GeneID:10102122" CDS 107604..108365 /locus_tag="Alide_0099" /inference="protein motif:TFAM:TIGR01222" /note="KEGG: dia:Dtpsy_0084 septum site-determining protein MinC; TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC" /codon_start=1 /transl_table=11 /product="septum site-determining protein minc" /protein_id="YP_004124773.1" /db_xref="GI:319760836" /db_xref="InterPro:IPR005526" /db_xref="InterPro:IPR013033" /db_xref="GeneID:10102122" /translation="MAVDTAGQARTYLDLKSAQLSVVALVLKTADVSAVAAELAARRA DDPEFFDNDPVLIDLSAVQGEAQPIDFAALVQALRSHRTQPVAVRGGSPAQMAAAHAA GLIAAPDVPAARAQPRESGAVREVVREVVREVQVEVPVQAPAPGALVVDKPLRSGQQV YARGSDLVVMAVVSFGAEVIADGNIHVYAPLRGRAIAGARGDTSARIFTTCLEPQLVS VAGIYRTTETELPDNVRGKPAQVRLDGEKLLIEPL" misc_feature 107634..108362 /locus_tag="Alide_0099" /note="septum formation inhibitor; Reviewed; Region: PRK01973" /db_xref="CDD:179357" misc_feature 107643..107876 /locus_tag="Alide_0099" /note="Septum formation inhibitor MinC, N-terminal domain; Region: MinC_N; pfam05209" /db_xref="CDD:113960" misc_feature 108045..108362 /locus_tag="Alide_0099" /note="Septum formation inhibitor MinC, C-terminal domain; Region: MinC_C; pfam03775" /db_xref="CDD:146423" gene 108420..109235 /locus_tag="Alide_0100" /db_xref="GeneID:10102123" CDS 108420..109235 /locus_tag="Alide_0100" /inference="protein motif:TFAM:TIGR01968" /note="TIGRFAM: septum site-determining protein MinD; KEGG: dia:Dtpsy_0085 septum site-determining protein MinD" /codon_start=1 /transl_table=11 /product="septum site-determining protein mind" /protein_id="YP_004124774.1" /db_xref="GI:319760837" /db_xref="GO:0016887" /db_xref="InterPro:IPR010223" /db_xref="GeneID:10102123" /translation="MAKIVVVTSGKGGVGKTTTSAAFASGLALAGHKTAVIDFDVGLR NLDLIMGCERRVVYDLINVIQGEANLNQALIKDKQCENLFVLAASQTRDKDALTQEGV EKVLKDLADMGFDYIVCDSPAGIESGALMAMHFADEALLVTNPEVSSVRDSDRILGML GSKTKRAIEGKDPIKEHLLITRYNPNRVQDGQMLGLEDIQDILRIKLIGVVPESENVL QASNQGLPAIHLAGTDVSEAYKDVVARFLGEDKPLRFTDAAKPGFFKRIFGGR" misc_feature 108513..109136 /locus_tag="Alide_0100" /note="Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a...; Region: MinD; cd02036" /db_xref="CDD:73299" misc_feature 108531..108539 /locus_tag="Alide_0100" /note="Switch I; other site" /db_xref="CDD:73299" misc_feature 108777..108791 /locus_tag="Alide_0100" /note="Switch II; other site" /db_xref="CDD:73299" gene 109242..109511 /locus_tag="Alide_0101" /db_xref="GeneID:10102124" CDS 109242..109511 /locus_tag="Alide_0101" /inference="protein motif:TFAM:TIGR01215" /note="KEGG: dia:Dtpsy_0086 cell division topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE" /codon_start=1 /transl_table=11 /product="cell division topological specificity factor mine" /protein_id="YP_004124775.1" /db_xref="GI:319760838" /db_xref="InterPro:IPR005527" /db_xref="GeneID:10102124" /translation="MSLLSFLLGEKKKTAAVAKERLQIILAHERSGRNAGKPDYLPAL QRELVAVISKYVKINADDLKVHFERQDDLEVLEVKIELPEAAGGK" misc_feature 109242..109496 /locus_tag="Alide_0101" /note="Septum formation topological specificity factor MinE; Region: MinE; cl00538" /db_xref="CDD:193859" gene complement(109535..110473) /locus_tag="Alide_0102" /db_xref="GeneID:10102125" CDS complement(109535..110473) /locus_tag="Alide_0102" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_1015 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124776.1" /db_xref="GI:319760839" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102125" /translation="MQELGNASSEMAFFHLLVRCGSLSATARELGLTTPAVSRKLALL EQRLGVQLLNRTTRRNSLTPEGEEYLVQARRILADIEDVEHSLRRSMAEPLGLLRVNA TLGFGRSHIAPVISRFCKTYPQVQIQFHLSVTPPPLTDDAFDVCIRFGEPPDARVIAR KVAANRRLLCAAPAYLERHGTPRVPADLVRHQCISIHHGQDAYGIWRLSAGRRTESVK VAETMVTNDGDIAVAWALDGHGILMRAEWDIDKYLHSGRLRQVLEQYSTPPADIYAVY PSRHQKARRVTAFVDFLCAELGQATSKTQASPRHRR" misc_feature complement(109565..110449) /locus_tag="Alide_0102" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(110273..110443) /locus_tag="Alide_0102" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(109595..110188) /locus_tag="Alide_0102" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479" /db_xref="CDD:176168" misc_feature complement(order(109658..109660,109739..109741, 109790..109792,109979..109981,109985..109987, 110027..110029,110144..110146,110156..110158)) /locus_tag="Alide_0102" /note="putative effector binding pocket; other site" /db_xref="CDD:176168" misc_feature complement(order(109763..109765,109772..109777, 109796..109810,109898..109900,110081..110101, 110105..110107,110117..110119,110126..110131, 110135..110140,110150..110155)) /locus_tag="Alide_0102" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176168" gene 110587..111564 /locus_tag="Alide_0103" /db_xref="GeneID:10102126" CDS 110587..111564 /locus_tag="Alide_0103" /inference="similar to AA sequence:KEGG:Bpro_4513" /note="KEGG: pol:Bpro_4513 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124777.1" /db_xref="GI:319760840" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102126" /translation="MSHEILRLSRRSTILGLSLLPLAGYAQAYPAKPVSVVIPYSAGG TTDIVARLIAQSLAASTGKTFVAENKGGGSTTIATGAVAKAAPDGYTLLANEMTQTII PWLFPKLSFDPIKDLLPVTVFAEAPYVLVVNSGVPAKSLRELVDLAKAQPGKLNFASG GAGSGPHIAGELLKTVAGVDMTHVPYKGSGPAVADLLGGQVDVLITAAPTVTAQMGSG RMRPLAVAHPRRLSSLPDVPTAAEAGFPDFRIANWFGLAAPKGTPAEVVAYLHAEVQK VLQRADVRDKLLAAGAEPVSMTPAEAARHVNAEARRWGELVRKAQIRLD" sig_peptide 110587..110673 /locus_tag="Alide_0103" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.963 at residue 29" misc_feature 110605..111555 /locus_tag="Alide_0103" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 110731..111552 /locus_tag="Alide_0103" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 111592..112755 /locus_tag="Alide_0104" /db_xref="GeneID:10102127" CDS 111592..112755 /locus_tag="Alide_0104" /inference="protein motif:PFAM:PF02746" /note="PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mes:Meso_4537 galactonate dehydratase" /codon_start=1 /transl_table=11 /product="mandelate racemase/muconate lactonizing protein" /protein_id="YP_004124778.1" /db_xref="GI:319760841" /db_xref="InterPro:IPR013341" /db_xref="InterPro:IPR013342" /db_xref="InterPro:IPR018110" /db_xref="InterPro:IPR018252" /db_xref="GeneID:10102127" /translation="MKIRKVEPLHVGQFMFVRITTDDGTVGYGEAGTWGHIEAAGVCI RRFAEYLEGKDAFAIEHHWNVMHRFSYFTGLAENAAISAIDIALWDIKGKALNVPIYE LLGGAARTKARIYGHIYEHSIEKMLVECQAKMEAGFNAFGHLNPFLDEGNDQIYFKTH IKKMRDAIDNTRRMREVVGDRVDLLIEIHRRLTPAEAIVFARGIEDTHPMFIEDPIRP EGPDGMARVAEKIGIPIATGERFANLYEFQTLMARGGVEYARVDLCLCGGITGAKKVA AIAEAHHVQVVPHNPLSPIGLAACLQLDAAIPNFAIQEYATGFEAGIFESRPEHLGSD IVDQVPLPDAGFVDIPTGPGLGMNLLPDAQKIRPPLVKPISMRPHFDGFVVDQ" misc_feature 111592..112659 /locus_tag="Alide_0104" /note="galactonate dehydratase; Provisional; Region: PRK14017" /db_xref="CDD:184455" misc_feature 111613..112662 /locus_tag="Alide_0104" /note="Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues...; Region: MR_like; cd03316" /db_xref="CDD:48191" misc_feature order(112015..112017,112021..112023,112150..112152, 112228..112230,112306..112308,112375..112377, 112456..112458,112531..112533) /locus_tag="Alide_0104" /note="active site pocket [active]" /db_xref="CDD:48191" gene complement(112786..113325) /locus_tag="Alide_0105" /db_xref="GeneID:10102128" CDS complement(112786..113325) /locus_tag="Alide_0105" /inference="protein motif:PFAM:PF01613" /note="KEGG: ajs:Ajs_0068 flavin reductase domain-containing protein; manually curated; PFAM: flavin reductase domain protein FMN-binding" /codon_start=1 /transl_table=11 /product="flavin reductase domain protein fmn-binding protein" /protein_id="YP_004124779.1" /db_xref="GI:319760842" /db_xref="InterPro:IPR002563" /db_xref="GeneID:10102128" /translation="MNSTHHPSPPAFSPREFRDALGMFATGVTIVTTRGAGGELVGMT VNSFNSVSLDPPLVLWSLAHKASSLQAFASATHYAINVLTVEQRALAERFATRGIDRW AGVAHRPGLHDMPVIEGVAAVFECTNRSQYAEGDHTIFVGRVERCTHLRGASPLLYHG GMFYTEHALGQLADTVIGP" misc_feature complement(112831..113265) /locus_tag="Alide_0105" /note="Flavin Reductases; Region: FlaRed; cl00801" /db_xref="CDD:193940" gene 113432..114208 /locus_tag="Alide_0106" /db_xref="GeneID:10102129" CDS 113432..114208 /locus_tag="Alide_0106" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_0088 alpha/beta hydrolase fold protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004124780.1" /db_xref="GI:319760843" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR000639" /db_xref="GeneID:10102129" /translation="MSLLPGFSLLGSGPTVLLLHDADGDHLSFAPQLETLASAGYRAV AWDMPGYGRSAPVEPYGFKGLAQRCLLLLDALRCGEATLVGHGFGAMLALEIALRAPM RVRRLVLCAGGPALDAAATAAWVAPRLAALEQGMDMARLADLVARDAGADALPEGLQL ARHAMGRVYAATYRRALQALTVFARRAPDLARLHVPTLLIGGEQDRCTPPEALLALAH VLPDARAVLLPGVGHWPQLEDPDGFEGALLEFLAMPARLH" misc_feature 113477..114160 /locus_tag="Alide_0106" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 114282..114947 /locus_tag="Alide_0107" /db_xref="GeneID:10102130" CDS 114282..114947 /locus_tag="Alide_0107" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0073 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein tetr" /protein_id="YP_004124781.1" /db_xref="GI:319760844" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10102130" /translation="MAFMNTLSQPRPSFKEQMHRAREDAIVEAACRLLGEKGFETMTV DEVACAVGIAKASLYKHFAGKDDLCAAAMVHVVGRLQRFLDELPEGLQALQRLQALLR WLLELQLGDETPLLPSRNSALAQALRTCDAYRASMEEVHARILGWIAEAQAAAQLRRE LPPEVILCALLARSTDPMLAMLRERGHGDAQILDWAVATCLGGLVSAPAAPERCSWPA PGC" misc_feature 114357..114497 /locus_tag="Alide_0107" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(114895..115317) /locus_tag="Alide_0108" /db_xref="GeneID:10102131" CDS complement(114895..115317) /locus_tag="Alide_0108" /inference="protein motif:PFAM:PF00582" /note="PFAM: UspA domain-containing protein; KEGG: ajs:Ajs_0074 UspA domain-containing protein" /codon_start=1 /transl_table=11 /product="uspa domain-containing protein" /protein_id="YP_004124782.1" /db_xref="GI:319760845" /db_xref="InterPro:IPR006015" /db_xref="InterPro:IPR006016" /db_xref="GeneID:10102131" /translation="MNILLAVDGSTYTKKMLAYLAAHDEMLGSSHTYTAITVQPPLPP RARAALGKETVDSYYADEGEKVLSPVVKFMGRHGVQPKTMIKVGPAGETIAKVAESGK YDLVVMGTHGHGSLGKLVMGSVSTQVLANCTVPVLLVR" misc_feature complement(114901..115314) /locus_tag="Alide_0108" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(114943..114954,114982..114987, 114991..114996,115204..115206,115294..115302)) /locus_tag="Alide_0108" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(115419..116264) /locus_tag="Alide_0109" /db_xref="GeneID:10102132" CDS complement(115419..116264) /locus_tag="Alide_0109" /inference="protein motif:PFAM:PF00149" /note="PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0075 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004124783.1" /db_xref="GI:319760846" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10102132" /translation="MKLQLLSDLHLEVHPHFSPSPAPGADVLVLAGDIGSYQPGSQLA DGDFGLARFSPLPQYAGWPTPVVFVPGNHEYDGQDFDTAHTRLRRTCDRLGLIWLERE SVVLQGVRLVGTTLWSDFDALAGHGADASQGQRLKLREKAFRAADFYLRKTGGTRHGE PFLAAQLREQALVCQAWLREALARPFDGATVAVTHFAPSLCSADPRYGMTPGTAGFCN ALDDCLPHARLWLHGHLHAPSDYLASGTHADGNSWSCRVVANPLGYARKGEQAAFQSH CVLTV" misc_feature complement(115473..116258) /locus_tag="Alide_0109" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" misc_feature complement(order(115563..115565,115680..115682, 116046..116051,116166..116168,116235..116237, 116241..116243)) /locus_tag="Alide_0109" /note="active site" /db_xref="CDD:163614" misc_feature complement(order(115563..115565,115680..115682, 116049..116051,116166..116168,116235..116237, 116241..116243)) /locus_tag="Alide_0109" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163614" gene complement(116291..117262) /locus_tag="Alide_0110" /db_xref="GeneID:10102133" CDS complement(116291..117262) /locus_tag="Alide_0110" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0076 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124784.1" /db_xref="GI:319760847" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102133" /translation="MPSLNFRTLDLNLLRVFDEVMAERNLTRAAEKLAITQPAVSNAL RRLREAVGDELLVRSGHGVEPTPRALALWPAVRQALGQLQESLAPGGFEPASAQATFV LAMADATGATLIPPLIEITEREAPGISLRVIPLTTRDPRRLLDDGTIDMAVGYFPAVL ADLTARAQADNVVAHESVRLYASQYVCVMRAGHPLADAPLSLDQYCAAHHLLVSFSGK PYGFIDEALAALGRERRIVLTVNQFFTAGRVVATTDLLTVLPLHFVGLADVGGDLVWR PLPMPLPTVHVDALWHRRRLYDPAHRWLRETIARAARNTPTPITLRD" misc_feature complement(116345..117244) /locus_tag="Alide_0110" /note="leucine transcriptional activator; Reviewed; Region: leuO; PRK09508" /db_xref="CDD:181918" misc_feature complement(117056..117232) /locus_tag="Alide_0110" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(116330..116965) /locus_tag="Alide_0110" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold; Region: PBP2_Nitroaromatics_like; cd08417" /db_xref="CDD:176109" misc_feature complement(order(116402..116404,116603..116605, 116714..116716,116924..116926,116936..116941, 116945..116947)) /locus_tag="Alide_0110" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176109" misc_feature complement(order(116507..116509,116516..116521, 116528..116533,116540..116554,116636..116638, 116861..116863,116867..116881,116885..116890, 116897..116902,116906..116911,116918..116923, 116930..116935,116942..116944)) /locus_tag="Alide_0110" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176109" gene 117388..117828 /locus_tag="Alide_0111" /db_xref="GeneID:10102134" CDS 117388..117828 /locus_tag="Alide_0111" /inference="similar to AA sequence:KEGG:Ajs_0077" /note="KEGG: ajs:Ajs_0077 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124785.1" /db_xref="GI:319760848" /db_xref="GeneID:10102134" /translation="MTKFAVIEFPSQHQGVARIEGAVSHLRRSATRFDPTRNGASLLL AALVAALLVVANEMVDTWGDGHLLAGWMLMWLIAFVGMALLAAPARRAVALLRGAAKS WSDARRRAAEDERTWNAALHDARIMADLSRAMNGIAVEDMRRYR" gene complement(117968..119836) /locus_tag="Alide_0112" /db_xref="GeneID:10102135" CDS complement(117968..119836) /locus_tag="Alide_0112" /EC_number="4.1.1.32" /inference="protein motif:PRIAM:4.1.1.32" /note="KEGG: dac:Daci_0114 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (GTP)" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxykinase (gtp)" /protein_id="YP_004124786.1" /db_xref="GI:319760849" /db_xref="InterPro:IPR008209" /db_xref="InterPro:IPR018091" /db_xref="GeneID:10102135" /translation="MNAPSMQGLSLQAPAYVKNARLIAWVAEMAALCKPAAIHWCDGS QEEYDQLCQQLVNAGTFKKLNPAKRPGSYLACSDPSDVARVEDRTFICSEKKEDAGPT NNWMAPNEMRATLQPLFDGCMAGRTMYVVPFSMGPLGSPIAHVGVELSDSAYVAVNMK IMTRMGKAVYDVIGTDGEFVPCMHTVGAPLKAGEKDQTSWPCNPQVKYIVHYPETREI WSYGSGYGGNALLGKKCLALRIASTMGRDQGWLAEHMLILGVTNPEGKKYHVAAAFPS ACGKTNFSMLVPPKAFEGWKVTTIGDDIAWIKPQPDGSLRAINPEAGYFGVAPGTNYH TNPNCMASLNKDVIFTNVALTDDGDVWWEGMEKDTGVVPGHLIDWQGRDWTPQIAKET GAKAAHPNARFTVAATNNPALDEAWDDPKGVKIDAFIFGGRRSTTVPLVTEARTWTEG VYMAATMGSETTAAAFGAQGVVRRDPFAMLPFMGYNMSDYFQHWLDLGAKIAGQGAAL PRIFTTNWFRKNAEGKFVWPGYGENMRVLKWMIDRIESRAQGLETAFGIAPAFAEINW NGLEFSAEQFESVTSIDKSVWAEELKLHTEHFDKLAHHLPQELLATKAALEKRLAA" misc_feature complement(117989..119773) /locus_tag="Alide_0112" /note="Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and...; Region: PEPCK_GTP; cd00819" /db_xref="CDD:29831" misc_feature complement(117971..119767) /locus_tag="Alide_0112" /note="Phosphoenolpyruvate carboxykinase; Region: PEPCK; pfam00821" /db_xref="CDD:144423" misc_feature complement(order(118238..118240,118247..118249, 118256..118258,118631..118633,118829..118831, 118856..118858,118862..118864,118928..118933, 118991..119011,119075..119077,119135..119140, 119156..119158,119162..119164,119585..119587)) /locus_tag="Alide_0112" /note="active site" /db_xref="CDD:29831" misc_feature complement(order(118631..118633,118862..118864, 119135..119140,119156..119158,119162..119164, 119585..119587)) /locus_tag="Alide_0112" /note="substrate-binding site [chemical binding]; other site" /db_xref="CDD:29831" misc_feature complement(order(118862..118864,118928..118933, 118994..118996,119075..119077,119135..119137)) /locus_tag="Alide_0112" /note="metal-binding site [ion binding]" /db_xref="CDD:29831" misc_feature complement(order(118238..118240,118247..118249, 118256..118258,118286..118291,118538..118540, 119000..119002,119006..119008)) /locus_tag="Alide_0112" /note="GTP binding site [chemical binding]; other site" /db_xref="CDD:29831" gene complement(120176..120337) /locus_tag="Alide_0113" /db_xref="GeneID:10102136" CDS complement(120176..120337) /locus_tag="Alide_0113" /inference="similar to AA sequence:KEGG:Dtpsy_0098" /note="KEGG: dia:Dtpsy_0098 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124787.1" /db_xref="GI:319760850" /db_xref="GeneID:10102136" /translation="MAHEHHIAPNAADVEAATATDPTETVVNLIPVVLPAAGAAMIFL LALIAVTMA" gene complement(120427..121626) /locus_tag="Alide_0114" /db_xref="GeneID:10102137" CDS complement(120427..121626) /locus_tag="Alide_0114" /inference="protein motif:TFAM:TIGR01127" /note="KEGG: dia:Dtpsy_0099 threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein" /codon_start=1 /transl_table=11 /product="threonine dehydratase" /protein_id="YP_004124788.1" /db_xref="GI:319760851" /db_xref="GO:0004794" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR005789" /db_xref="GeneID:10102137" /translation="MFSIQDIQDAAARLRGQVLDTPCVESRTLSQVTGAQVFLKFENL QFTASFKERGACNKLSQLTPEERKRGVVAMSAGNHAQGVAYHAQRLGLRAVIVMPRFT PGVKVERTRGFGAEVVLHGDTLEEAHRHAHLLAGQQGLTFVHPYDDEAVAAGQGTLAL EMLAEQPDLDVLVVSVGGGGLLAGMATAARALKPSLEIVGVQTARFPAMVNAVKGTQH EQGMSTIAEGIAVGQPGRMTREVIARLVDDLLLVQEGDIEQAVLMLLEIEKTLVEGAG AAGLAALVRYPERFRGKKVGLVLSGGNIDPLLLAAIIERGMVRSGRLARIKVSARDVP GVLARITATVAEAGANIEEVHHQRAFTLLAAQNVEIELVLQTRGKAHVQQVLEQLRAA HMEAELH" misc_feature complement(120430..121626) /locus_tag="Alide_0114" /note="threonine dehydratase; Provisional; Region: PRK07334" /db_xref="CDD:180936" misc_feature complement(120712..121617) /locus_tag="Alide_0114" /note="Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562" /db_xref="CDD:107205" misc_feature complement(order(120712..120723,120814..120822, 120832..120834,120841..120846,120853..120855, 121054..121059,121495..121500,121591..121596, 121603..121605,121612..121617)) /locus_tag="Alide_0114" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:107205" misc_feature complement(order(120727..120729,121084..121098, 121393..121395,121474..121476)) /locus_tag="Alide_0114" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107205" misc_feature complement(121474..121476) /locus_tag="Alide_0114" /note="catalytic residue [active]" /db_xref="CDD:107205" misc_feature complement(120448..120651) /locus_tag="Alide_0114" /note="C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains; Region: ACT_ThrD-II-like; cd04886" /db_xref="CDD:153158" gene complement(121729..123390) /locus_tag="Alide_0115" /db_xref="GeneID:10102138" CDS complement(121729..123390) /locus_tag="Alide_0115" /inference="protein motif:PFAM:PF02770" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124789.1" /db_xref="GI:319760852" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="GeneID:10102138" /translation="MDWTTHHVFNQFPELYDYDPLATDPALCEALARTGAGWARPALN GYAARLGRTETYMLAEQANRHLPELRRFDSRGRRIDALEFHPGWHALMALYRGQGLVS QPFREARAGRWAAWAAGFYLHGQVEQGTLCPATMTQAAIPLLQKEPALWAQLQERLYS DAYDARDLPVQDKASIWLGMGMTEKQGGSDVRANTTVATAVGAGGRGGEYLLRGHKWF FSAPQCDAHLVTARVQEGGPFACFYVPRWRPDGSRNAVRVQRLKDKLGNRSNASGEVE FEDAWGVLMGEEGRGIPTIIEMAGYTRLNCVAGSAAILRQATVQAIAYARQRHAFGKA LAEQPLMRAVLADLALESEASLVLLMRLAEAFEREGDGDPAQRAWKRAMTPAAKFWVC KRAVELTGEAMEVFGGNGYVEDGVMARLFREAPVNSIWEGSGNVMCLDVLRALAREPG AARALLAELQPAAQGEPRIAAALQGLQALLAASADELEALGRVLAQRLVLVAQACLLR AHAPACVADAFIATRLGDGGAGRVAGAIDTRGMDVDAILARAFPA" misc_feature complement(121741..123390) /locus_tag="Alide_0115" /note="isovaleryl CoA dehydrogenase; Provisional; Region: PRK11561" /db_xref="CDD:183199" misc_feature complement(122050..123324) /locus_tag="Alide_0115" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(122086..122088,122092..122094, 122098..122106,122731..122733,122737..122739, 122845..122847,122851..122853,122974..122976)) /locus_tag="Alide_0115" /note="active site" /db_xref="CDD:173838" gene complement(123446..126166) /locus_tag="Alide_0116" /db_xref="GeneID:10102139" CDS complement(123446..126166) /locus_tag="Alide_0116" /inference="protein motif:TFAM:TIGR01524" /note="KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA; TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="magnesium-translocating p-type atpase" /protein_id="YP_004124790.1" /db_xref="GI:319760853" /db_xref="GO:0005524" /db_xref="GO:0015444" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR004014" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006068" /db_xref="InterPro:IPR006415" /db_xref="InterPro:IPR008250" /db_xref="InterPro:IPR018303" /db_xref="GeneID:10102139" /translation="MHPHIPREVFAGFLRTRRMVRHFRRRALLETLGRTGVSRELPAA QSRALAAAADADAGALLRQLGSAETGLTEAQADAMRERAGPNEVEHEKPLPWWVHLWH CFRTPFSLLLTLLAAISLFTRDMKGALVIGTMVVLATLLRFWQEGRSSKAADALKAMV GNTATVLRGSLPEDAGVRRVELPIRLLVPGDLVVLSAGDMIPADCRVLAAKDLFVAQA AMTGESMPVEKSAARCGAGAGNPLELDNIVFMGTNVVSGSATAVVLATGGGTYFGALA GRVIATDRAPTSFQSGVNKVSWLLIRFMSAMAPLVFFINGFSKGDWLEALLFALAIAV GLTPEMLPMIVTSTLAKGAVFLSRKKVIVKRLDAIQNFGAMDVLCTDKTGTLTQDRIF LARHVDAWGEESGDVLELAYLNSYYQTGLKNLLDVAVLEHAEVHRELEPARNFRKVDE IPFDFDRRRMSVVVAEHGAHHLLITKGAVEEVLAVCTQVRHGAATEPLTPALLERIRA VTAGLNEEGLRVVAVAARQGPPTQDVYGLADESALTLVGYVAFLDPPKDSTAAALKAL AGRSVAVKVLTGDNELVAAKICREVGLAQQGVLRGGDVERMGDEELGHAVERHNLFAR LTPMHKERIVRRLKANGHVVGFMGDGINDAPALRAADIGISVDSAVDIAKEAADIILL EKSLMVLEQGVQEGRRTFANMLKYIRMTASSNFGNVLSVLTASAFIPFLPMLPIHLLV QNLLYDISQIAIPFDNVDEELLRRPLRWQPGDIGRFMVFFGPVSSVFDITTFAMMWFV FGAQTPAQQTLFQSGWFVVGLLTQTLIVHMIRSPGLPFVQSRAATPLLVMTGAIMAVG IFLPMGPLAHYFRLQALPPLYFALLPAIVLGYMAATQAMKGIYRRRWGWQ" misc_feature complement(123449..126166) /locus_tag="Alide_0116" /note="magnesium-transporting ATPase MgtA; Provisional; Region: PRK10517" /db_xref="CDD:182511" misc_feature complement(125846..>125971) /locus_tag="Alide_0116" /note="Cation transporter/ATPase, N-terminus; Region: Cation_ATPase_N; cl02930" /db_xref="CDD:194483" misc_feature complement(125057..125779) /locus_tag="Alide_0116" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature complement(124079..>124369) /locus_tag="Alide_0116" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature complement(123479..123979) /locus_tag="Alide_0116" /note="Cation transporting ATPase, C-terminus; Region: Cation_ATPase_C; pfam00689" /db_xref="CDD:189671" gene complement(126301..127332) /locus_tag="Alide_0117" /db_xref="GeneID:10102140" CDS complement(126301..127332) /locus_tag="Alide_0117" /inference="protein motif:PFAM:PF02574" /note="PFAM: homocysteine S-methyltransferase; KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent)" /codon_start=1 /transl_table=11 /product="homocysteine s-methyltransferase" /protein_id="YP_004124791.1" /db_xref="GI:319760854" /db_xref="GO:0008898" /db_xref="InterPro:IPR003726" /db_xref="InterPro:IPR011822" /db_xref="GeneID:10102140" /translation="MTLPHYTRAQQLPAILEQRIAILDGAMGTMIQRFKLTEEQYRGE RFKDFARDVKGNNELLSLTRPNVIRDIHEGYLAAGADLIETNTFGATSIAQEDYGMAD LAYEMNLESARLARAACGKFSTPDKPRFVAGALGPTPKTASISPDVNDPGARNVTFEQ LRAAYLEQTLALIAGGADVLLVETIFDTLNAKAALFAIDEAFEQTGECLPIMISGTVT DASGRILSGQTVTAFWHSVRHANPLSIGLNCALGAALMRPYIQELAKAAPDTFISCYP NAGLPNPMSDTGFDETPEVTSRLVHEFATERLVNIVGGCCGTTPDHIGAIARAVAPVG ARRLFSAVS" misc_feature complement(126340..127317) /locus_tag="Alide_0117" /note="Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]; Region: MetH; COG0646" /db_xref="CDD:30991" misc_feature complement(126343..127284) /locus_tag="Alide_0117" /note="Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]; Region: MHT1; cl14105" /db_xref="CDD:187229" gene complement(127329..128330) /locus_tag="Alide_0118" /db_xref="GeneID:10102141" CDS complement(127329..128330) /locus_tag="Alide_0118" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_0175 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124792.1" /db_xref="GI:319760855" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102141" /translation="MAGQSPLRGVPGTSLLRGLSASSANRNVNGPAGIMSGMKLHQLR YFAVLAEELHFGRAAERLAITQPPLSSGIKALEEELGVRLFERTSKYVALTPAGHAYL AEVRMVLDHVARAGETARAVAAGLQGRLDIGFTGSMVYRDMPRIVRAFGERAPGIDVQ LRELSSSEQIDALLHRQLHAGFINTAAVPPGLLCRPLAADHFVCCLPQGHALAHGASV ALPALEQESFVMFARDVAPANHDNVIALFQRAGIHPRTRHAARQWLTVVSLVALGMGV ALVPASLAQAGVQGVCFLPIAGLHHPTVGVLAWHEGTDAPALRVFLESAEPFLQSGP" misc_feature complement(127362..128213) /locus_tag="Alide_0118" /note="DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986" /db_xref="CDD:182183" misc_feature complement(128034..128213) /locus_tag="Alide_0118" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(127362..127946) /locus_tag="Alide_0118" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like_2; cd08448" /db_xref="CDD:176139" misc_feature complement(order(127461..127463,127515..127520, 127524..127529,127545..127550,127605..127610, 127710..127712,127842..127844,127848..127850, 127854..127856,127878..127880,127887..127892, 127896..127901,127908..127910,127929..127931)) /locus_tag="Alide_0118" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176139" misc_feature complement(order(127614..127616,127635..127640, 127779..127781,127926..127928)) /locus_tag="Alide_0118" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176139" gene complement(128355..129518) /locus_tag="Alide_0119" /db_xref="GeneID:10102142" CDS complement(128355..129518) /locus_tag="Alide_0119" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124793.1" /db_xref="GI:319760856" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102142" /translation="MNFALTPEQEQIQAAIERVCEPFDADYWLKKDQEGGFPHDFHQA LAESGWLGIAMPEEYGGAGLGISEAALMMHTISATGAGLSGASAVHMNIFGLHPVVVF GTDEQKKRWLPPLIQGKDKACFGVTEPNAGLNTLKLQTRAVREGDHYVVHGQKVFIST AQVANKILLLTRTRPAEECKGTEGLTLFYTDLDRSKVEVREIAKLGRKCVDTNQLFID GLRIPVEDRVGEEGKGFSYILHGMNPERILIAAEAVGLGRAALARAAGYAAEREVFGR PIGKNQAIQHPLAEAWMDLEAAHLMVQKAAWLYDQGANCGAEANAAKFLGAEAGYRAC ERAIFTHGGMGYAKEYHVERYMRESWIPRLAPVSPQLILCFIAEKVLGLPKSY" misc_feature complement(128358..129518) /locus_tag="Alide_0119" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(128436..129500) /locus_tag="Alide_0119" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(129042..129044,129048..129050, 129141..129143,129147..129149,129237..129239)) /locus_tag="Alide_0119" /note="active site" /db_xref="CDD:173838" gene complement(129515..129898) /locus_tag="Alide_0120" /db_xref="GeneID:10102143" CDS complement(129515..129898) /locus_tag="Alide_0120" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0177 cupin 2 domain-containing protein" /codon_start=1 /transl_table=11 /product="cupin 2 conserved barrel domain protein" /protein_id="YP_004124794.1" /db_xref="GI:319760857" /db_xref="InterPro:IPR013096" /db_xref="GeneID:10102143" /translation="MTTSRYLVRAADVPSYQPANHHHTHNQRLIGPETVGAKQMEVLL GTLHKGGGALPHAHPGIEQACYLLEGTARAQVEDEAFDMVPGDMCFFPADKMHVFTVT SDQPVKLLVIYSPPYGESPDKVIRP" misc_feature complement(129560..129763) /locus_tag="Alide_0120" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene complement(129915..130880) /locus_tag="Alide_0121" /db_xref="GeneID:10102144" CDS complement(129915..130880) /locus_tag="Alide_0121" /inference="similar to AA sequence:KEGG:Aave_0180" /note="KEGG: aav:Aave_0180 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124795.1" /db_xref="GI:319760858" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102144" /translation="MKTILRATLAACTLAIGATAALAQAYPNAPVTLVVPFAAGSGTD SVARAVASGLAARLKQPVVVDNKPGANAQVAAQFVAKAKPDGYTLFMTTNTSHSANPA LYKNLKYDPIKDFTPVARVGELPFALAVHPALPVKTLAELLDYARANPGKLSYATPNS TSLVAMESIKHIAKIDVLGVPYKSSPQAMTDLVGGQVQVYVADLGSGMGMLKTDKVRT LGITTAEPTPLLPGVPPIGKTVKGFDLTSWNGIFGPAGLPPAVVQRLNTELQAVLADK DLQDKLAQIGFQVWPSKTPEEFAQYVAGQLTHWRTLIQQAGIQPE" sig_peptide complement(130809..130880) /locus_tag="Alide_0121" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.740 at residue 24" misc_feature complement(129924..130805) /locus_tag="Alide_0121" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(129927..130745) /locus_tag="Alide_0121" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 131138..133006 /locus_tag="Alide_0122" /db_xref="GeneID:10102145" CDS 131138..133006 /locus_tag="Alide_0122" /inference="protein motif:TFAM:TIGR01389" /note="TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; helicase domain protein; DEAD/DEAH box helicase domain protein; HRDC domain protein; KEGG: dia:Dtpsy_0103 ATP-dependent DNA helicase RecQ; SMART: helicase domain protein; DEAD-like helicase ; HRDC domain protein" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase recq" /protein_id="YP_004124796.1" /db_xref="GI:319760859" /db_xref="GO:0004003" /db_xref="GO:0008026" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR002121" /db_xref="InterPro:IPR006293" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="InterPro:IPR018329" /db_xref="InterPro:IPR018982" /db_xref="GeneID:10102145" /translation="MSPAHFVLHDVFGYDQFRGPQQAIIDHVIAGGDALVLMPTGGGK SLCYQVPAIVRRDAGRGVTVVVSPLIALMHDQVGALHEAGVEAAFLNSTLDWQQTLDV ERRLSRGEITLLYAAPERVTTDRFLGLLDGLHERGLLSLFAIDEAHCVSQWGHDFRPE YRQLSILHERYPRVPRIALTATADALTRADIVEGLRLQEARQFVSSFDRPNIRYRLEE KKEPLTQLMRFIDREHLGDAGVVYCQSRKRVEELAQALCDAGLTALPYHAGLPAEVRQ QNQDRFLREDGIVMVATIAFGMGIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLPA DAWMAYGLQDVVNQRRMIDESPAGEEFKAVMRGKLDALLALAEATDCRRVRLLGYFGE QSEPCGNCDNCLNPPAVWDGTDAARKLLSTIYRVHQASGISFGTGHIMDIVRGKDTDK VRQFGHEKLSTFGVGKEYTEAQLRGVLRQLLATGAVGLHKVMLESGHSFDTLVLTDGS RPVLRGEQHVQLREATAQAQAAAKPKRARRAATPPVAAANLGQDAQVRFINLKAWRAE VAREHNLPAYVIFHDATLAAIAERNPATLDELQGISGMGVKKLEAYGEDVVRVCRQ" misc_feature 131156..133000 /locus_tag="Alide_0122" /note="ATP-dependent DNA helicase RecQ; Region: recQ; TIGR01389" /db_xref="CDD:130456" misc_feature 131234..131647 /locus_tag="Alide_0122" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 131258..131272 /locus_tag="Alide_0122" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 131570..131581 /locus_tag="Alide_0122" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature 131768..132151 /locus_tag="Alide_0122" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(131867..131878,131936..131941,132014..132022) /locus_tag="Alide_0122" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(132038..132040,132101..132103,132113..132115, 132122..132124) /locus_tag="Alide_0122" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 132368..132673 /locus_tag="Alide_0122" /note="RQC domain; Region: RQC; pfam09382" /db_xref="CDD:192276" misc_feature 132815..132997 /locus_tag="Alide_0122" /note="HRDC domain; Region: HRDC; cl02578" /db_xref="CDD:154997" gene complement(133010..133690) /locus_tag="Alide_0123" /db_xref="GeneID:10102146" CDS complement(133010..133690) /locus_tag="Alide_0123" /inference="protein motif:TFAM:TIGR02495" /note="KEGG: ajs:Ajs_0085 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside-triphosphate reductase activating protein" /protein_id="YP_004124797.1" /db_xref="GI:319760860" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR012840" /db_xref="GeneID:10102146" /translation="MAAATPAEALRIGGLTPLTTIDFPGRLAAVVFCQGCPWRCGYCH NTGLLDAATPTAHAWADVQQLLHARRGLLDGVVFSGGEPTLQAGLPDALARVRAMGFA TGLHTAGMYPERLATLLPLLDWVGLDIKAPLHRYDAITRTPGSGAKAWESLRLVLASG VAHECRTTWNAGLYGDDDLQALADALAAEGVQHWALQECRTDGAPAWAPPQAVAQRWP GTFTLRRA" misc_feature complement(<133187..133603) /locus_tag="Alide_0123" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(133187..133189,133313..133315, 133367..133375,133445..133450,133454..133456, 133559..133567,133571..133573,133577..133579, 133583..133585)) /locus_tag="Alide_0123" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene complement(133668..133868) /locus_tag="Alide_0124" /db_xref="GeneID:10102147" CDS complement(133668..133868) /locus_tag="Alide_0124" /inference="similar to AA sequence:KEGG:Dtpsy_0105" /note="KEGG: dia:Dtpsy_0105 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124798.1" /db_xref="GI:319760861" /db_xref="GeneID:10102147" /translation="MSHFSTTEQAALAAVQLTDDERQPCEVWTRVMGYHRPVASFNVG KQGEHNERQFFSEHARGCSNAC" misc_feature complement(133713..>133796) /locus_tag="Alide_0124" /note="anaerobic ribonucleoside-triphosphate reductase; Region: NrdD; TIGR02487" /db_xref="CDD:162883" gene complement(133951..135981) /locus_tag="Alide_0125" /db_xref="GeneID:10102148" CDS complement(133951..135981) /locus_tag="Alide_0125" /inference="protein motif:TFAM:TIGR02487" /note="KEGG: dia:Dtpsy_0106 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside-triphosphate reductase" /protein_id="YP_004124799.1" /db_xref="GI:319760862" /db_xref="GO:0008998" /db_xref="GO:0016491" /db_xref="InterPro:IPR005144" /db_xref="InterPro:IPR012833" /db_xref="GeneID:10102148" /translation="MTPPPAPVATLPRDVIQRNGERAAFDAERIRSAIARAGSATGDF GADEAQLLTAQATKVLIHRFRGEAPAIEQIQDVVEQTLIAANHLQTARAYMAHRQRHA LLRADRQTLVHVESSINEYLTRADWRVNANANQGYSLGGLILNVAGKVTANYWLSHVY APEIGEAHRSGDIHIHDLDMLSGYCAGWSLRTLLHEGLNGVPGKVEAGPPKHMSSAVG QIVNFLGTLQNEWAGAQAFSSFDTYMAPFVRKDAMDYAAVRQCIQELVYNLNVPSRWG TQTPFTNLTFDWTCPEDLREQVPVIGGEEMPSSYGELQAEMDLINRAYIDVMTTGDAK GRVFTFPIPTYNITPDFPWESENAAALFDMTAKYGLPYFQNFINSELSPNMVRSMCCR LQLDLRELLKRGNGLFGSAEQTGSLGVVTVNCARLGYLHAGDEASLFAALDRLLELGK QSLEVKRKLIQRLMDQGLFPYTKRYLGTLRNHFSTLGVNGINEMIRNFTADAHDITSE WGHAFAVRLLDHVRARMTAFQEETGHLYNLEATPAEGTTYRFAKEDKKRWPAILQAGT AEQPYYTNSSQLPVGFTDDPFEALQRQEALQGKYTGGTVLHLYMGERISSGAACRELV KRALTNFRLPYITVTPTFSICPTHGYLAGEHPFCPTCDEERLEAKRRRLLAA" misc_feature complement(133996..135951) /locus_tag="Alide_0125" /note="anaerobic ribonucleoside triphosphate reductase; Provisional; Region: PRK08270" /db_xref="CDD:181341" misc_feature complement(135679..135939) /locus_tag="Alide_0125" /note="ATP cone domain; Region: ATP-cone; pfam03477" /db_xref="CDD:190653" misc_feature complement(133996..135591) /locus_tag="Alide_0125" /note="Class III ribonucleotide reductase; Region: RNR_III; cd01675" /db_xref="CDD:153084" misc_feature complement(order(134335..134337,134344..134355, 135220..135222,135316..135318,135325..135330, 135337..135339,135349..135357,135364..135369, 135451..135456,135460..135462)) /locus_tag="Alide_0125" /note="effector binding site; other site" /db_xref="CDD:153084" misc_feature complement(order(134350..134352,134359..134361, 134728..134730,134809..134814,135139..135141, 135280..135282,135427..135429)) /locus_tag="Alide_0125" /note="active site" /db_xref="CDD:153084" misc_feature complement(order(133999..134001,134008..134010, 134038..134040,134047..134049)) /locus_tag="Alide_0125" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:153084" gene complement(136106..139408) /locus_tag="Alide_0126" /db_xref="GeneID:10102149" CDS complement(136106..139408) /locus_tag="Alide_0126" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004124800.1" /db_xref="GI:319760863" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10102149" /translation="MMHPTHRTELRKSLYWLAGLLAGLLLVQLFPAPDAARGLARYLP LHTSMEVLSIAMAAMVFGIAWATQKYRPNGRDLVLGPGLLGVAILDMSHCLSYAGMPD FITPNGPEKAILFWLAARSLAALALLCAAFWPQRHDNRLGPRARCWSLACVLLFVGAV HYVVLLHPQSVPPTFIPGVGLTKFKIDFEYGLIAAYVLAGMGFLTHLRQDREFGLTRL ALAAFTMAMGEFFFTLYANVTDIYNVTGHLYKIMACAFLYRGLFVETVQAPYQELQAS EAQHRAMLDTLPDLLFELNRQGVYLSVHANDASKLAAPAGQLLGRRLGEILPAQAAAA CLDALAEAERSGVARGQRFRLALPSGVHHFELAIARKANPAGREDTYLTLVRDITATV HDEQRIAFEARLNASLLDLQHSDVQELEADFLQRGIRHVERLTHSPFAVLHFVHDGQD PELAACSAGAAGGMPAQAEVWRQECAAQRIQNQPPPGDALLRWMSLPVQEGGRTRMLL GVANKAEDYDRQDAQALQALAYAIWRRVVQRRQDAVILRLSEALEQSPHQVVITDVRA NVLYVNRAFSEVSGYSAQEILGKNPRMLQSGLTPRSVYEEMWRRLPQGQPWQGELVNR RKNGHIYTEIVSLYPIRDLSGQVTHYVAHKEDITVQREAEERIQALSNFDTLTGLLNK KSFDERLALAIERAGASHGRLSMLWFDLDNFKLINESLGHTAGDELLVEAANRLRSCL GTQNALARYSGDAFVAIVPQADQASVALMAQEALRLLQTATSVQGHPVSVSASAGVAV YPDDARTAGTLASAAELAMYRVKEDGRNGLRFFAPEMQAHTQRSLELAAGLKDAARKG ELFLVYQPQRALGSGALVGAEALLRWRHPQWGLVSPAEFIPIAEQSGAITAIDFWVVE QAAQQLRAWDAAGLPPLVVAVNVSAAQFARPQLAEELLHILQRVDVSPQRIEVELTEA VALKHPELAETTIRRLHDMGFKVALDDFGTGYSSMSYLKRYTIDKLKIDQSFVRELAE KTSDMAIVTAIVRMAHSLHLSTLAEGVETAEQAALLHDCGCDEIQGYWYSRPLEPRAF EAFAKGLPQRGA" misc_feature complement(138233..138559) /locus_tag="Alide_0126" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(137408..137770) /locus_tag="Alide_0126" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(137438..137734) /locus_tag="Alide_0126" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(137525..137527,137540..137542, 137618..137629,137666..137668,137684..137686, 137696..137698)) /locus_tag="Alide_0126" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(137498..137500,137504..137506, 137588..137593,137600..137602,137624..137626, 137636..137638)) /locus_tag="Alide_0126" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(136922..137395) /locus_tag="Alide_0126" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(137153..137155,137282..137284)) /locus_tag="Alide_0126" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(137150..137161,137165..137167, 137231..137233,137243..137245,137255..137260, 137267..137269)) /locus_tag="Alide_0126" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(137093..137095,137177..137179)) /locus_tag="Alide_0126" /note="I-site; other site" /db_xref="CDD:143635" misc_feature complement(136148..136864) /locus_tag="Alide_0126" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(139694..140122) /locus_tag="Alide_0127" /db_xref="GeneID:10102150" CDS complement(139694..140122) /locus_tag="Alide_0127" /inference="protein motif:PFAM:PF01814" /note="PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dia:Dtpsy_0108 hemerythrin HHE cation binding domain-containing protein" /codon_start=1 /transl_table=11 /product="hemerythrin hhe cation binding domain protein" /protein_id="YP_004124801.1" /db_xref="GI:319760864" /db_xref="InterPro:IPR012312" /db_xref="GeneID:10102150" /translation="MNIDRFKHDHVDILGQIDRLRQLAHAGVEGNAAAIARGIVAISS TIKLHLAVEDRLLYPALSQSGNPELARLSQRFQHDMGSIATAFMAFARRWNTAESVRG DPQSFRREANDVLRRVYERMQRENREFYPRIEAEEAMATH" gene complement(140192..142501) /locus_tag="Alide_0128" /db_xref="GeneID:10102151" CDS complement(140192..142501) /locus_tag="Alide_0128" /inference="similar to AA sequence:KEGG:Dtpsy_0109" /note="KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit" /codon_start=1 /transl_table=11 /product="nitric oxide reductase large subunit" /protein_id="YP_004124802.1" /db_xref="GI:319760865" /db_xref="InterPro:IPR000883" /db_xref="GeneID:10102151" /translation="MGKYAKYWYTLIGVLIVTFSLLGYYGAEVYRTAPPIPGQVLVQG SDKPLYTKDSILDGQTAWQSVGGMQLGSILGHGAYQAPDWTADWLHRELTAWLELAAQ KDYGKSFAELDAGQQAVLRDRLKTEYRTNTYDQAKDTVVISPLRAQAIAETAQYYDKL FSDDPSLHKSRESFAMKENTLPSAERRAQMAGFFFWTAWAAATERPTDVGGGNGATYT NNWPHEPLIGNQPTGENMVWSVMSVVIMMAGVGFLVWGWAFLRKHDEQDPVPPAHDPL SRVALTPSQRALGKYLFLVVALFVFQVFIGGFTAHYTLEGQKFYGIDLSQWFPYALTR TWHIQAALFWIATGFLAAGLFLAPVINGGKDPKYQKLGVDVLFWALVVVCVGSFIGNY LAIAHILPKEWSFWLGHQGYEYVDLGRLWQIGKFAGIAFWLLLMARAIFPALLAPNGQ DKNLLALLTSSVVCIGLFYGTGLFYGERTHISVMEYWRWWVVHLWVEGFFEVFATTAL AFIFSTLGLVSYRMATAASLASASLFMLGGVPGTFHHLYFAGTTTPVMAVGASFSALE VVPLVVLGHEAWEHWRLQHKTPWMADLRWPLMCFVAVAFWNMLGAGVFGFMINPPISL YYIQGLNTTPVHAHAALFGVYGFLALGFTLLVLRYVRPQMVFNERLMKTGFWWLNAGL VLMISTSLLPIGLFQFHASVTHGLWYARSEEFLQQPFLETLRWIRTFGDVVFITGALC VAWQVASAVLFGARTPAAPSTGALAGASR" misc_feature complement(140255..142492) /locus_tag="Alide_0128" /note="Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily...; Region: Heme_Cu_Oxidase_I; cl00275" /db_xref="CDD:193743" gene 142653..144266 /locus_tag="Alide_0129" /db_xref="GeneID:10102152" CDS 142653..144266 /locus_tag="Alide_0129" /inference="protein motif:PFAM:PF00158" /note="KEGG: dia:Dtpsy_0110 anaerobic nitric oxide reductase transcription regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="sigma-54 factor interaction domain-containing protein" /protein_id="YP_004124803.1" /db_xref="GI:319760866" /db_xref="GO:0003700" /db_xref="GO:0005524" /db_xref="GO:0008134" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10102152" /translation="MTVKEAELATVLVDLCADLGTELPQAVRLQRLVDVLRAQFGCGA VALLRLEEERLRPMAVAGLVSDTLGRRFVVGQHPRLAAILARHEVTCFEHDSTLPDPY DGLLDTLVGEPLPVHDCMGVGLHVEGRPWGVLTLDALATGTFGAAARRRLAQSVPLVE AVVRVARLEQELRTLRMAASGPGEGGAALASSERGGVGELEIVGESPALKRLLHELGI VAASELPVLLLGETGVGKELFARLLHHQSPRHDRPLVHVNCAALPESLAESELFGHVR GAFSGAVSDRPGRFEAAEGGTLFLDEVGELPLSVQAKLLRTLQNGEIQRLGADRPRSV NVRVIAATNRNLREQVASGAFRADLYHRLSVYPVPIPPLRERGNDVLLLAGRFLDFNR ARLGLRSLRLSPDAQAALRRYRWPGNVRELEHVISRAALKALSRGADRNSIVTLEEGL LDLDALDVPAADGPAAPAAPGPAAGAAAGAALAAPAGTLRDTVDACQRQAIIAALDRH QGNWAQAARALDVDSSNLHKLARRLGLKS" misc_feature 142674..144263 /locus_tag="Alide_0129" /note="anaerobic nitric oxide reductase transcription regulator; Provisional; Region: PRK05022" /db_xref="CDD:179916" misc_feature 143325..143744 /locus_tag="Alide_0129" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 143340..143363 /locus_tag="Alide_0129" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(143343..143366,143553..143555,143679..143681) /locus_tag="Alide_0129" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 143541..143558 /locus_tag="Alide_0129" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 143736..143738 /locus_tag="Alide_0129" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(144319..144981) /locus_tag="Alide_0130" /db_xref="GeneID:10102153" CDS complement(144319..144981) /locus_tag="Alide_0130" /inference="similar to AA sequence:KEGG:CtCNB1_2843" /note="KEGG: ctt:CtCNB1_2843 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124804.1" /db_xref="GI:319760867" /db_xref="InterPro:IPR014602" /db_xref="GeneID:10102153" /translation="MENFPQDIYTEPEPDADTLANLGPLTGMAGIWTGTRGLDVNPKA DGPERQAFIEHMELQPIDAQTNGPQLFYGLRYHTRIVKPDGVETFHDQVGYWLWEPAT GTVIQTLSIPRGQAAMAVGHAEAGARTFRLQAVRGSTVNGIVSNTFLEHAFRTESYTI TVSIHDDGTWSYEQDTVLIIPGQAEPFHHTDRNTLRKIGEPVPNPTARAAARTPGDAQ GR" misc_feature complement(144391..144918) /locus_tag="Alide_0130" /note="nitrobindin heme-binding domain; Region: nitrobindin; cd07828" /db_xref="CDD:143652" misc_feature complement(order(144409..144414,144448..144450, 144454..144456,144460..144462,144520..144522, 144526..144528,144649..144651,144712..144717, 144742..144744,144826..144828,144832..144834, 144841..144846)) /locus_tag="Alide_0130" /note="heme-binding site [chemical binding]; other site" /db_xref="CDD:143652" gene 145218..146606 /locus_tag="Alide_0131" /db_xref="GeneID:10102154" CDS 145218..146606 /locus_tag="Alide_0131" /EC_number="4.3.1.17" /inference="protein motif:TFAM:TIGR00720" /note="TIGRFAM: L-serine dehydratase 1; KEGG: dia:Dtpsy_0112 L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain" /codon_start=1 /transl_table=11 /product="l-serine dehydratase 1" /protein_id="YP_004124805.1" /db_xref="GI:319760868" /db_xref="GO:0003941" /db_xref="InterPro:IPR004644" /db_xref="InterPro:IPR005130" /db_xref="InterPro:IPR005131" /db_xref="GeneID:10102154" /translation="MAVSVFDLFKIGIGPSSSHTVGPMRAARLFVQRLAREGHLPRVA RVRCTLYGSLGATGRGHGSDRAVLLGLCGHAPDTVDVDAIEPLIARIRARHRLPLADG PEVAFDEAADLLLVPDVALPLHANGMRFEAFDAAGGLLDAQVYYSVGGGFIVSGEAAV DARRQAEIAPDTEVLPLPFHSGEQLLAQAAAQGGSMARVMRVNERHWRTDSEIDAGLL AIWGAMQDCVARGCRTGGVLPGGFRVRRRAPALHQALQGAPDTLQDPLQVIDWVNLFA LAVNEENAAGGRVVTAPTNGAAGIVPAVLHYYWRFIAGASEAGVIDFLLTAGAIGILY KENASISGAEVGCQGEVGVACSMAAAGLCAVLGGMPAQVENAAEIGMEHHLGLTCDPV GGLVQIPCIERNALAAVKAINAARMALRGDGTHHVSLDQVIKTMRETGADMMSKYKET SRGGLAVNIVEC" misc_feature 145224..146594 /locus_tag="Alide_0131" /note="L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720" /db_xref="CDD:188076" misc_feature 145248..145694 /locus_tag="Alide_0131" /note="Serine dehydratase beta chain; Region: SDH_beta; pfam03315" /db_xref="CDD:190598" misc_feature 145851..146591 /locus_tag="Alide_0131" /note="Serine dehydratase alpha chain; Region: SDH_alpha; cl12120" /db_xref="CDD:196345" gene 146738..147688 /locus_tag="Alide_0132" /db_xref="GeneID:10102155" CDS 146738..147688 /locus_tag="Alide_0132" /inference="similar to AA sequence:KEGG:Dtpsy_0114" /note="KEGG: dia:Dtpsy_0114 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124806.1" /db_xref="GI:319760869" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102155" /translation="MPLRRRLIAFCLAALPLATWAAWPERPITIVVPAAAGGTTDIAA RVLAEKMGKDLGTAIVVENKGGGGGSIGTAQVARAKPDGYTLLMGNIGPVAINFSLYK QLSYKESDLRGITNVISVPNILVVHADSPARSVKDLVGLAKTRRLNVSTSGVGQSPHM SSEMFRQKAGIEVTLVPFPGAAPAVTALLGQQVDFMIDNLPSSMPHIKSGKFRALAIT SGERAAQLPDVPTMAEAGVPMQVTAWFGLLAPAGTPDAVVLRLQQSARKAMHEPDVRQ RFAELGGVPGGETPAEYDAFIAQERKSWAQIVKAAGLSLE" sig_peptide 146738..146803 /locus_tag="Alide_0132" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" misc_feature 146810..147676 /locus_tag="Alide_0132" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 146867..147676 /locus_tag="Alide_0132" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 147693..149267 /locus_tag="Alide_0133" /db_xref="GeneID:10102156" CDS 147693..149267 /locus_tag="Alide_0133" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004124807.1" /db_xref="GI:319760870" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10102156" /translation="MPMQADIEHLLAQPFGSLPELIARQAAHRPGHTALILEERSLDY AALCAGMDRVARSLQQGGLGPGDVVAVCAGTSVEYLLAYLGALRAGVAVAPLAPSATA EHLSAMLDNCGARLVLRDREVAAQWPLHAGAVLRCVALDDAPEAGEPWSQWLAQGGGA PAPIAPAPDWAFNVIYSSGTTGVPKGIVQSWAMRWAHVRRAVTNGYGPDAVSLCATPL YSNTTLVAALPTLALGGTLVLMRKFDAAHYLELAERHGATHTMLVPVQYQRLMACPAF DGTDLSRLRHKFCTSAPFGAALKAEVLRRWPGRLIEYYGLTEGGVRCELHCHDFPHKL HTVGRPGEGADIRFIDEQGRELPPGAQGEIVGRSAGMMSGYHRLPDKTREAEWFDAQG QRFIRSGDVGRLDEDGFIVLGDRMKDMIITGGFNVYPSDIEGVLQQHPQVAECAVVGV PSEQWGETPVAYVVPRAGAQPGARELREWLNARVGKTQRVADLRLAERLPRSEIGKVL KRELREQYLRANPAAH" misc_feature 147741..149240 /locus_tag="Alide_0133" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature <148203..149240 /locus_tag="Alide_0133" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 149285..150277 /locus_tag="Alide_0134" /db_xref="GeneID:10102157" CDS 149285..150277 /locus_tag="Alide_0134" /inference="similar to AA sequence:KEGG:Ajs_0099" /note="KEGG: ajs:Ajs_0099 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124808.1" /db_xref="GI:319760871" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102157" /translation="MPIRPSRPRRAMLAGLALGAGALLAPAAQAADAWPAKPIQLVIP YPPGGSADLLGRPLAVQLQQQLGQPVVLEYKPGAGGTLATQYLARAKPDGYTVLMVLA AHAINDSLYPKLPYDTRKDFAPVSLVANLPMVVAASAKLQARNIQELVQAAKAAPGKL TFGSAGNGNTGHLAAEYFSSIAGVKMTHVPYKGSAGVVNAMLAGDIDLTFDSISTSMP HIRSGRMHALAVTSAQRSALAPEVATVQEQGIPGFEVTGWYALIAPAGTPPDIRQRLA REIAAALRQPQLQSQLAAGGYEPVGSTPEALQAHIDSEIARWAAVVKSTGAKVD" sig_peptide 149285..149377 /locus_tag="Alide_0134" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 31" misc_feature 149393..150262 /locus_tag="Alide_0134" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 149501..150265 /locus_tag="Alide_0134" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 150290..150745 /locus_tag="Alide_0135" /db_xref="GeneID:10102158" CDS 150290..150745 /locus_tag="Alide_0135" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_0117 thioesterase superfamily protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004124809.1" /db_xref="GI:319760872" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10102158" /translation="MQHHSIAINDIPPSPFAGEPPDMFFGLPMAMARAMALRGERIGN DMAQVRLGFQPDQANSRGDVHGGSIATLLDCTLAAAVRSHDPAAYGVATIDLTLHFVT AAGGDLIATAHCERRGRSISFARGEVRAEDGTLVALATGSFKLIARRQD" misc_feature 150398..150724 /locus_tag="Alide_0135" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(150479..150481,150566..150568,150587..150598) /locus_tag="Alide_0135" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(150482..150484,150488..150490,150497..150499, 150569..150583,150587..150589) /locus_tag="Alide_0135" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(150485..150487,150509..150514,150521..150526, 150566..150568) /locus_tag="Alide_0135" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(150767..151777) /locus_tag="Alide_0136" /db_xref="GeneID:10102159" CDS complement(150767..151777) /locus_tag="Alide_0136" /inference="similar to AA sequence:KEGG:Dtpsy_0118" /note="KEGG: dia:Dtpsy_0118 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124810.1" /db_xref="GI:319760873" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102159" /translation="MAHDTPLARCSRRQLLAMAAGAAAAGPLHAQAQAGFATRPVRVV VPFAAGGATDVITRVLGEHMARRFGQPVVVDNKPGAAGLIAGEAVVKSAPDGMTALLG TTSTMLTNKYLYQKTAYDPLTDLTPLVRVCLAPIALVVSADVPARNMQEFMAWIRANK GRLSYGSYGIGSHGQLACATLSDIAGADMSHVAYKGEAPMVQDLLGGQIKMGMGSLLS LKAHIDAGKLRALAMTGPRRVPLLPDVPTFAEAGYPQDALALVGWLAIAGPKGMPAQV ARQWAEAANQAVASRDGMARIIAAGFVPVDDDTPEKFARLWAQEAPIWGRLLQAAGVQ PT" sig_peptide complement(151685..151777) /locus_tag="Alide_0136" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.889 at residue 31" misc_feature complement(150776..151672) /locus_tag="Alide_0136" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(150782..151612) /locus_tag="Alide_0136" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(151817..152803) /locus_tag="Alide_0137" /db_xref="GeneID:10102160" CDS complement(151817..152803) /locus_tag="Alide_0137" /inference="similar to AA sequence:KEGG:Dtpsy_0119" /note="KEGG: dia:Dtpsy_0119 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124811.1" /db_xref="GI:319760874" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102160" /translation="MAITRRKTLARCLPLIALAAACGMGGAQAQDSYPSKPIRVIVPY PAGGGTDTIARLIGTQLSQLLGQPVVVENKPGASGILGNDIVAKAPGDGYTVLMGITA LVQIPALYKKVPYKLGDLAPVSQIAKSADLLMVPRSSGVTTLQQFVDKAKAAPGTLNY GSYGNATSSHMNGERFKQKAGIDITHIPYQGSGPEMAALLGGQLTLAFVDATGAYPHI KSDKVNILAITGSQRHPALPQVPTMTESGYPGLEANGWFGMFVPASTPKAIVDKLGAE VASIVKSPELNKRLTDMGLIAVGSLPDDFKAQVDKDAAHWKSVAESARISMD" sig_peptide complement(152714..152803) /locus_tag="Alide_0137" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 30" misc_feature complement(151823..152716) /locus_tag="Alide_0137" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(151829..152647) /locus_tag="Alide_0137" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(152836..153990) /locus_tag="Alide_0138" /db_xref="GeneID:10102161" CDS complement(152836..153990) /locus_tag="Alide_0138" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124812.1" /db_xref="GI:319760875" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102161" /translation="MQDLIQRTIYREDHEQFREQARRFFDKEIVPFHAQWERDGIVPK EVWRKAGREGLLNTMLPEPYGGGGDFGHAAILIEEVARTGASGLGFPLHSDIVAPYIL AYGSTEQKDRWLPRMAAGELIGAIAMTEPGAGSDLKSVRTTARLVKDSEGDHYILNGS KTFITNGINSEIVIVVAKTSPELGAKGVSLIVVEEGTPGFSKGRKLEKIGLMAQDTSE LFFDNVKVPVGNLLGEENMGFKYLMKELAQERLVVAVRAAASIEAFLQKTVDYTRERK AFGQTVFEFQNTRFKLAEAKAQATMLRVFVDDCMRLHMQRQLTPERAAMVKLNATALQ NRLLDEFLQLHGGYGYMTEYQVGRAWTDARIGRIYGGSDEIMKEIIARTL" misc_feature complement(152839..153963) /locus_tag="Alide_0138" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(152839..153957) /locus_tag="Alide_0138" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(152872..152874,152878..152880, 152884..152892,153496..153498,153502..153504, 153607..153609,153613..153615,153703..153705)) /locus_tag="Alide_0138" /note="active site" /db_xref="CDD:173838" gene complement(154066..155613) /locus_tag="Alide_0139" /db_xref="GeneID:10102162" CDS complement(154066..155613) /locus_tag="Alide_0139" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004124813.1" /db_xref="GI:319760876" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10102162" /translation="MQDFFGRAQAAPERVVVFMADQGRSYTAGALAQMAQQMAQWLAA QGLQTGERFAVLLENRVEILALVLAARQAGLYAAVLSTHLTADEVAYIVGDSGARLVV ASDKTLSQLQGIGLPCWTVDEARPQAPSLHAALAALQGPPVDFADRPLGRDLLYSSGT TGRPKGVLKALWPAELRGQADPEAVSTARLLGMGEDTVYLSPAPLYHAAPLRYTLRAL ELGGRAVIMERFDAENALALIERYRVTHSQWVPTMFGRLLKLPAQVRQRHDLSSHHMA IHAAAPCPVDVKRAMLDWWGDILMEYYAGSEGCGTTMIDSTEWRLRPGSVGRPTTGRL HIVDDEGRELPAGEIGQVYFSGGGQFTYLNDPEKTRQAINDRGWVTYGDIGHVDAEGY LFLSDRRADLILSGGVNLYPQEIENALARHPGVQEVAVVGVPHPDFGEVPLAAVVLHP GQEATPETARAIAARAAEVLARLKLPQRMVFVDALPRLETGKLLRRQLKERFREQPQA GFALRDS" misc_feature complement(154090..155469) /locus_tag="Alide_0139" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK08276" /db_xref="CDD:181347" misc_feature complement(154102..155466) /locus_tag="Alide_0139" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 155819..156997 /locus_tag="Alide_0140" /db_xref="GeneID:10102163" CDS 155819..156997 /locus_tag="Alide_0140" /EC_number="2.3.1.16" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_0122 acetyl-CoA acetyltransferase; PFAM: Thiolase-like" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004124814.1" /db_xref="GI:319760877" /db_xref="GO:0003941" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020613" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10102163" /translation="MKNPVIVDAIRSPMARAKPDGALAQLHPVDLLSQVLQQLVERNK IDPGSVDDVICGCVSQSGEQANTPGRLAWLAAGLPMHVPSTTIDRKCGSSQQAVHFAA QAIMAGVQDIVIACGVESMSRVPMGSSRMGKNTTGARFDALYAPGLVGQGVSADLVAA KWGLGRTELDAYAARSHQRAHAAQAGGGFAREIVGMDTPAGRVAQDETIRAGTTVEKL AGLKAVFETEELSARFPQIQWNTTAGNASQMTDGAAAMLIMSEERALQLGLTPRARFV AFDVVGDDPLYMLTAPIPATQRVLAKARMKLDDIHHYEINEAFASVPMAWQKELKADG ERLNPRGGAIALGHPLGASGIRLMTTMLHALEDSGQRYGLQSMCEAGGMANATIIERL " misc_feature 155819..156994 /locus_tag="Alide_0140" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK07801" /db_xref="CDD:181123" misc_feature 155831..156991 /locus_tag="Alide_0140" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(155891..155893,155972..155974,156014..156016, 156026..156028,156038..156040,156071..156082, 156104..156106,156125..156130,156137..156139, 156182..156184,156650..156652,156656..156658, 156662..156664,156722..156724,156959..156964) /locus_tag="Alide_0140" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(156089..156091,156860..156862,156950..156952) /locus_tag="Alide_0140" /note="active site" /db_xref="CDD:29411" gene 157053..157820 /locus_tag="Alide_0141" /db_xref="GeneID:10102164" CDS 157053..157820 /locus_tag="Alide_0141" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004124815.1" /db_xref="GI:319760878" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10102164" /translation="MKLQQGMTALVTGGVSGLGEASAIALLERGLQVVAVDLNDERGQ AMEKQYAGRLRYVKADVSDEAQMQQAIAAAEAFGNFRALVHCAGIGGPVRLVEKDGSP GSLEKYVNIIRVNQIGTFNTLRLAAASMARNEPVDGERGACVLTASVAGYEGQIGQIP YASSKAGVIGMTIVAARDLASKFIRVCTIAPGLFDTPILAKLPENVRQSLAASVPHPA RLGHPAEYAMTALHILENPMLNGETIRLDGAIRMQPR" misc_feature 157053..157811 /locus_tag="Alide_0141" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557" /db_xref="CDD:180126" misc_feature 157068..157814 /locus_tag="Alide_0141" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(157089..157091,157095..157100,157104..157106, 157161..157169,157308..157316,157488..157496, 157533..157535,157545..157547,157623..157634) /locus_tag="Alide_0141" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(157395..157397,157494..157496,157533..157535, 157545..157547) /locus_tag="Alide_0141" /note="active site" /db_xref="CDD:187535" gene 157889..158887 /locus_tag="Alide_0142" /db_xref="GeneID:10102165" CDS 157889..158887 /locus_tag="Alide_0142" /inference="similar to AA sequence:KEGG:Dtpsy_0125" /note="KEGG: dia:Dtpsy_0125 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124816.1" /db_xref="GI:319760879" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102165" /translation="MPPCNRRRALHLTGACALLALGALATAPAARADAAWPTRPITFV IPGAAGGTTDTPARFMAQKLGERLGQPIVVDNKPGAGGMLGAGLVARAQPDGYTVLVG NTGSNAINYSAYQKLGYKPDDFIALTDMISFANVLVVPVKSPIKSLGELVAAAKKEPG KLAFSSAGVGQTTHLMGELLRQRAGVDVVHVPYKGSAPATMAIVSGETQFMFDNLTGS LAHVKDGKLRALAVTGATREPELPDVPTMTELGMRDFDKVGWMGFFLPAKTPPEIVKK LTDNLVAVLKDPAVVQRYRELGGRPGGMASAQFSQMVERDRKDWGELIRSQKLQLD" sig_peptide 157889..157987 /locus_tag="Alide_0142" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.858 at residue 33" misc_feature 157994..158878 /locus_tag="Alide_0142" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 158054..158866 /locus_tag="Alide_0142" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 158897..159703 /locus_tag="Alide_0143" /db_xref="GeneID:10102166" CDS 158897..159703 /locus_tag="Alide_0143" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0109 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004124817.1" /db_xref="GI:319760880" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10102166" /translation="MTDTSSFAGRHVFVAGGSSGINLGIAQAFARAGAHVTVMSRSPD KVQQAAEGLRALGAQALGISADVRDSAAVDAALRQSHALFGDIDVLVSGAAGNFIAPA KDLSPNGFRTVIDIDLNGSFHVLRLAYPLLRKPGASVINISAPQGVNPTMYQVHACAA KAGIDMMTRVLAMEWGEDGVRVNAIAPGPIADTEGMRRLAPSPEALANAVASVPLQRM GTLEDIAHMALFLSSPQAGYVTGAVIPVDGGSSLRGGRDMRASYTPRGAA" misc_feature 158897..159661 /locus_tag="Alide_0143" /note="short chain dehydrogenase; Provisional; Region: PRK07576" /db_xref="CDD:181043" misc_feature 158915..159652 /locus_tag="Alide_0143" /note="Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; Region: TER_DECR_SDR_a; cd05369" /db_xref="CDD:187627" misc_feature order(158942..158944,158951..158959,159014..159022, 159089..159100,159173..159181,159242..159244, 159320..159328,159377..159379,159455..159466, 159470..159472) /locus_tag="Alide_0143" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187627" misc_feature order(159017..159019,159098..159100,159179..159190, 159212..159214,159218..159223,159230..159232, 159326..159328,159332..159334,159365..159367, 159461..159463) /locus_tag="Alide_0143" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187627" misc_feature order(159104..159106,159197..159205,159209..159217, 159224..159229,159236..159238,159248..159253, 159260..159265,159272..159274,159284..159286, 159302..159304,159332..159334,159344..159355, 159359..159361,159368..159373,159380..159385, 159392..159397,159401..159424,159428..159430, 159461..159463,159533..159541,159545..159553, 159563..159565,159572..159577,159584..159586, 159599..159601,159605..159622,159626..159652) /locus_tag="Alide_0143" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187627" misc_feature order(159185..159187,159332..159334,159365..159367, 159377..159379) /locus_tag="Alide_0143" /note="active site" /db_xref="CDD:187627" misc_feature order(159197..159205,159209..159211,159224..159229, 159236..159238,159251..159253,159260..159265, 159344..159355,159359..159361,159368..159373, 159380..159385,159392..159397,159404..159406, 159413..159418) /locus_tag="Alide_0143" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187627" gene 159700..159804 /locus_tag="Alide_0144" /db_xref="GeneID:10102167" CDS 159700..159804 /locus_tag="Alide_0144" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124818.1" /db_xref="GI:319760881" /db_xref="GeneID:10102167" /translation="MSGGRQRMRTGVEMVGAVQCFLEKKPQPFQRPGC" gene 159841..160620 /locus_tag="Alide_0145" /db_xref="GeneID:10102168" CDS 159841..160620 /locus_tag="Alide_0145" /inference="protein motif:PFAM:PF09339" /note="KEGG: dia:Dtpsy_0128 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="regulatory protein iclr" /protein_id="YP_004124819.1" /db_xref="GI:319760882" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10102168" /translation="MNTDADGKLVSALVRGISILRCFGHKRTELSARELMELTGLPKP TLFRLTDTLCELGLLRYSERLSKYVPGLGLLQLSSPVLTRMALRQFARPLMQSLADLT EGQVQLGVGHKRELCLVELANGMGNSVYRPEIGVRMSLSRTATGRAYLLGMADDAREA YLQDLQASDPQRAAWLAQRLVNAREDMERHGFCRSHGDLHSEIESIAVPMSQPQDGEL WIFAVSVPVFSPLYDRLESDLGPRLRTLVRSVEAVVGAGVP" misc_feature 159868..160140 /locus_tag="Alide_0145" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 159871..160608 /locus_tag="Alide_0145" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 160237..160572 /locus_tag="Alide_0145" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 160715..161824 /locus_tag="Alide_0146" /db_xref="GeneID:10102169" CDS 160715..161824 /locus_tag="Alide_0146" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004124820.1" /db_xref="GI:319760883" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102169" /translation="MKVLDSVRVLEIGGLGPGPFCAMHLADLGADVISVVRKDQGGSP TGSLLNRGKRSVFADLKTEEGRRLVLALVQDADALIEGMRPGVMERLGLGPEECLALN PRLVYGRMTGWGQSGPLAPRAGHDANYAAVSGALWGSSPADARPVSPFAVLGDIAGGA MYLMTGLLSGILQARATGRGTVVDAAIVDGAAHMLNLNLSARQRGVVADERGHSMYDS SPFYETYVCADGKHVTLGAIEPQFYALLLATLGLAGDPDFAGDQWDKAAWPARRARLA ALFLTQPRAHWQALLEPTDVCFGAVLSPVEAAEHPHMRARGVYTERAGVLQAMPAPRF DGAPYLPGDGCAPGAHTAQVLAQLAGQGAKAVWRR" misc_feature 160724..161767 /locus_tag="Alide_0146" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(161850..162839) /locus_tag="Alide_0147" /db_xref="GeneID:10102170" CDS complement(161850..162839) /locus_tag="Alide_0147" /inference="similar to AA sequence:KEGG:H16_B1448" /note="KEGG: reh:H16_B1448 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004124821.1" /db_xref="GI:319760884" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102170" /translation="MSHPFCHIVPLRRRSVLLGGAALLGMLSSPAWSQEVARIYVGFA AGGVTDLAARLLAPALSAELGQTFIVENRPGASSALAIKAVEGSAPASHTFVLYPTLA LLGFLLNGQQPALDRITPISLLYEQFAVLAINPQVAGLENVRTLQDLLQVAKAKAGTL TYTSSGVGSTGHLAMEWVCSLAGVKMQHVPYKGGAPAVTDVLGGHVGTIFADSTIIAP HVKSGKVRALAINYPVRVPGFAEVPTVAEQGFKEVSAVPWVVLAGPPGMSDAAADRMA AAVSRVLAKPDIAQSMQEQNMVPRHSTPRETRQLMQRDMLAWRKIIEDNGIKL" sig_peptide complement(162738..162839) /locus_tag="Alide_0147" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 34" misc_feature complement(161859..162647) /locus_tag="Alide_0147" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(162883..163299) /locus_tag="Alide_0148" /db_xref="GeneID:10102171" CDS complement(162883..163299) /locus_tag="Alide_0148" /inference="protein motif:PFAM:PF01796" /note="PFAM: protein of unknown function DUF35; KEGG: reh:H16_A2147 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124822.1" /db_xref="GI:319760885" /db_xref="InterPro:IPR002878" /db_xref="GeneID:10102171" /translation="MSEAPARPLPQPTDLTRPYWQAAARGELHMQHCGACGRWQFYPR PFCIHCEAEALQWRPVAGTGKVYTYTVNHRAPNPFMKARLPYVVAMIELDEGPRLMAN VLDARPGDMAIGRRVEVAFERVSDDMALPQFRLLAE" misc_feature complement(163132..163242) /locus_tag="Alide_0148" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" misc_feature complement(162934..163131) /locus_tag="Alide_0148" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene complement(163301..164461) /locus_tag="Alide_0149" /db_xref="GeneID:10102172" CDS complement(163301..164461) /locus_tag="Alide_0149" /inference="similar to AA sequence:KEGG:H16_A2148" /note="KEGG: reh:H16_A2148 acetyl-CoA acetyltransferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004124823.1" /db_xref="GI:319760886" /db_xref="InterPro:IPR002155" /db_xref="GeneID:10102172" /translation="MNPSLSKSVAIVGVAESDLGKVPGKSALELQAQAAMLALADAGL KLSDVDGVFAHTDDRFSSLQVSEFLGLRPRFVDSTNVGGMSNLLHVQRAMAAIAAGMC EVALITYGSTQLSDGSRKGGAVAADVPHTPRGQFILPYGHLSPIGYYAMVAQLHMHRY GTTPKDLAEVAVAARRWAQLNPKAYRREPTSIDEVMASPLVAEPLRQRDCCLVTDGGG AMVVVSAGRARDLRQKPVYVLGAAETHAHHYTPFNTGDWLDTGVASTAEAALRMAGVT RADIDVVQIYDHFTIGVIQSLEELGFCKRGEGGAFVADGALAPGGRLPVNTSGGGLSY GHPGMFGMFVAIEAVRQLRGECGERQLPKAELALCHAPGLVFSCNTTMILGV" misc_feature complement(163307..164461) /locus_tag="Alide_0149" /note="thiolase; Provisional; Region: PRK06158" /db_xref="CDD:180434" misc_feature complement(163313..164428) /locus_tag="Alide_0149" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature complement(order(163454..163456,163604..163606, 164213..164215)) /locus_tag="Alide_0149" /note="active site" /db_xref="CDD:29416" gene complement(164484..165641) /locus_tag="Alide_0150" /db_xref="GeneID:10102173" CDS complement(164484..165641) /locus_tag="Alide_0150" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reh:H16_A2149 acyl-CoA dehydrogenase, long-chain specific" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124824.1" /db_xref="GI:319760887" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102173" /translation="MPMTSVSETPRPMFGAEHALYRASVARFIANEITPHHAEWEREG RVPRQLWRDAGAAGLLCPSIADAYGGGGGDYLYSAIVVEEIARALATGVTGFTTHSEN VAPYLLEFGSEAQKREFLPKMASGEVVGSLAMTEPGAGSDLKAIRTTAKAVDGGFEIT GQKTFITNGAHADRVIVFAKTSPEAGARGISLFWVDTKTPGFAVGRVLDKIGQLAQDT AELFFDKVFVPRDALIGELNAGFGYAMSGLVRERLLIALRCAVALEVALDWTIDYVKQ RQAFGHALIDNQYIRFRLADIKTHAAATRAFVDSCLAQYLQGQLTADGAAMAKLWASE ATRAIDDLMQFFGGNGYMREYPIARAYADVRPNRIYGGSSEIMREVIARGL" misc_feature complement(164487..165602) /locus_tag="Alide_0150" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(164487..165596) /locus_tag="Alide_0150" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(164520..164522,164526..164528, 164532..164540,165141..165143,165147..165149, 165240..165242,165246..165248,165336..165338)) /locus_tag="Alide_0150" /note="active site" /db_xref="CDD:173838" gene complement(165676..167217) /locus_tag="Alide_0151" /db_xref="GeneID:10102174" CDS complement(165676..167217) /locus_tag="Alide_0151" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2150 long-chain-fatty-acid--CoA ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004124825.1" /db_xref="GI:319760888" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10102174" /translation="MSPLEQWARERPEGIAYRMVPSGHAVSWRELELRSRKLSAAMVQ AGLRAGDGIALMLENHLRYFEILWAAHRIGLYYTPISRHLKTEEMSHIVRDCDAKWLF CSARTAGELDAQVLRGLPVRRVMLDGQADGFDEYEALIAAYADDVALPETPEGMDFCY SSGTTGLPKGIKRALADAGKHFASKSDPRTHWKDFDTRSVYLSTAPFYHTAPVRWNMA VMRAGGHCVMMEKFDAELTLQAIDRFKVTHAQFVPTMFIRMLRLPDDVKAQYDPGSLR YAVHAAAPCPATVKRAMIDWWGPILYEFYSGTELVGRTSLDSHEWLAHPGSVGRAEVG RIHIVDEAGRELPPGENGVIYFSGGPRFEYHKDPAKTHSAYNDRGWATYGDIGHVDEE GYLYLTDRLANTIVSGGVNIYPQEAENVLHEHPAVLDVAVVGVPDAEFGEAVKAVVQL QPPHQASPALAAELIAYCRERISTLKCPRSVDFVDTLPRAESGKLLKRLVKARYWDGG RGIAH" misc_feature complement(165697..167175) /locus_tag="Alide_0151" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK08276" /db_xref="CDD:181347" misc_feature complement(165727..167148) /locus_tag="Alide_0151" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(167204..168139) /locus_tag="Alide_0152" /db_xref="GeneID:10102175" CDS complement(167204..168139) /locus_tag="Alide_0152" /EC_number="4.2.1.107" /inference="protein motif:PRIAM:4.2.1.107" /note="KEGG: reh:H16_A2151 acyl dehydratase; PFAM: MaoC domain protein dehydratase" /codon_start=1 /transl_table=11 /product="3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-coahydratase" /protein_id="YP_004124826.1" /db_xref="GI:319760889" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10102175" /translation="MAIDYDTLRQWQIADQRDRYGADDCIRYALSLGMGADPLDEADL RYVLEGENMSVMPTWLACVGAPGAWASDPGTGIDWMQILHGEHRMRFHAPPPPEGEVL SQTRISRVVDKGAGKGALVVTERRASNAATGQLLATVEHVSFCRADGGFSSPAQPGDC APQALPAVPEREPDATMDMATLPGAALLYRLNGDRNPIHAQPGAARAAGFDRPILHGL CTFGMAARALVRMACGNDPARLASIAARFSAPVFPGDTLQARLWFERDGDARQARFSV WARERGRMVLSHGVADIRKPLASAGTARGQAHVTA" misc_feature complement(167243..168082) /locus_tag="Alide_0152" /note="enoyl-CoA hydratase; Region: PLN02864" /db_xref="CDD:178455" misc_feature complement(167258..167635) /locus_tag="Alide_0152" /note="HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit; Region: HDE_HSD; cd03448" /db_xref="CDD:48043" misc_feature complement(order(167537..167539,167549..167551, 167555..167557,167567..167572,167579..167581, 167588..167590)) /locus_tag="Alide_0152" /note="dimer interaction site [polypeptide binding]; other site" /db_xref="CDD:48043" misc_feature complement(order(167267..167269,167285..167287, 167312..167314,167318..167320,167357..167359, 167399..167401,167405..167407,167411..167413, 167420..167422,167456..167458,167468..167470, 167477..167479,167486..167488,167492..167494, 167543..167545,167552..167554,167558..167560, 167576..167578)) /locus_tag="Alide_0152" /note="substrate-binding tunnel; other site" /db_xref="CDD:48043" misc_feature complement(order(167486..167491,167498..167500, 167543..167545,167552..167554,167558..167563, 167573..167575)) /locus_tag="Alide_0152" /note="active site" /db_xref="CDD:48043" misc_feature complement(order(167489..167491,167543..167545, 167552..167554,167558..167560)) /locus_tag="Alide_0152" /note="catalytic site [active]" /db_xref="CDD:48043" misc_feature complement(order(167420..167422,167426..167428, 167456..167458,167465..167467)) /locus_tag="Alide_0152" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:48043" gene complement(168157..169080) /locus_tag="Alide_0153" /db_xref="GeneID:10102176" CDS complement(168157..169080) /locus_tag="Alide_0153" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reh:H16_A2152 short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004124827.1" /db_xref="GI:319760890" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10102176" /translation="MNAQARPMDGKVVVVTGAGNGIGRATALLLAGQGASVVVNDLGA SGSGEGSDAGPAQKVVDEITAAGGVAVANTDSVATPEGANAIIQTAITRFGRIDGVVN NAGILRDRIFHKMNREEWQAVIDVHLNGSYYVSRAAAPYFKDQENGAYVHMTSTSGLV GNFGQANYAAAKLGIAALSKSIALDMARFHVRSNCIAPFAWSRLIGTLPSETEAEKKR LERMQSMKPEQVAQVAAFLLGNAARDISGQIFAVRGNEVMVMSQPRPVASVHSGEGWD AQSLADRAMPALRRAFTPLERSPEVFNWDPV" misc_feature complement(168307..169062) /locus_tag="Alide_0153" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(168301..169056) /locus_tag="Alide_0153" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(168478..168489,168565..168567, 168577..168579,168616..168624,168766..168774, 168952..168960,169015..169017,169021..169026, 169030..169032)) /locus_tag="Alide_0153" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(168565..168567,168577..168579, 168616..168618,168700..168702)) /locus_tag="Alide_0153" /note="active site" /db_xref="CDD:187535" gene complement(169106..170089) /locus_tag="Alide_0154" /db_xref="GeneID:10102177" CDS complement(169106..170089) /locus_tag="Alide_0154" /inference="similar to AA sequence:KEGG:H16_A2153" /note="KEGG: reh:H16_A2153 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004124828.1" /db_xref="GI:319760891" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102177" /translation="MWSRIFQMGAPVIAAVSLALPLSAHSQGEVFKASKPMHIVAPSS PGGILDQTSRLVAKALTDIVGQPVIVDNHPGAGGTIGIQTMLRAEPDGHTLVMGSLGP NAANYTLQDKLPYTAADMTGVIRVLTMPDVVVVNPKLPVKSIAELKAYAQNSPNGVSM AVSTSGSSGHLAGAMLNQRAGIKAVEVVYRGASPALTDLVGGQVDYMVDNLITALPLV RSGKLRAIAVTTRERSAELPDVPTLMELGYKDFDVSVWLGLFVSSKTPAATVQALNAA LNKALSDPQVQKTIAQQGGSATGGSTEEFAQFVRNETTRWAEVIRAGNIKP" sig_peptide complement(170009..170089) /locus_tag="Alide_0154" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.883 at residue 27" misc_feature complement(169115..170068) /locus_tag="Alide_0154" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(169115..169930) /locus_tag="Alide_0154" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 170319..171104 /locus_tag="Alide_0155" /db_xref="GeneID:10102178" CDS 170319..171104 /locus_tag="Alide_0155" /inference="protein motif:PFAM:PF01614" /note="KEGG: reh:H16_A2154 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="transcriptional regulator iclr" /protein_id="YP_004124829.1" /db_xref="GI:319760892" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10102178" /translation="MATPDSEGFVRSFARGLRVIEAMGRTGAHTVSSVAQDTELPRTV ARRILLTLCELGYACPTPDKGFRLTPKVLSLGLTYLTSQPFWGHAQRVLETVCLQLRE SCAVAVMQGNEVVFVLRIPSAKVMSPHLGMGSRLPAYATAPGRVLLAYQGAGYQDQYF GQTPLRPLTGQTQTDPAELRHELARIAQQGHAWVEGEYDAHVSGLSLPIYDERRKVVA ALGASLLTSDFDRARAEREILPPLRAAAEQLSGLAPSFLAPVL" misc_feature 170334..171068 /locus_tag="Alide_0155" /note="beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; Region: pcaR_pcaU; TIGR02431" /db_xref="CDD:131484" misc_feature 170346..170612 /locus_tag="Alide_0155" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 170715..171068 /locus_tag="Alide_0155" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene complement(171124..172380) /locus_tag="Alide_0156" /db_xref="GeneID:10102179" CDS complement(171124..172380) /locus_tag="Alide_0156" /inference="protein motif:PFAM:PF07690" /note="KEGG: ajs:Ajs_0113 major facilitator superfamily transporter; manually curated; PFAM: major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004124830.1" /db_xref="GI:319760893" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10102179" /translation="MPQFPVTVPASTSTHSRAQPLWVMLLALLSGFALSQSYRTITAI VAQGLQADFGLSAQSLGAFAGLFGLSFGVAQLLMGITMDRYGLRRTVLASAPLSIAGA ALSALAPSHGWLMAGQLLIGIGCSPAFLACTVFIARHFPSERFAFFSGLSLGMGGLGL MLTGTPLAWVVQHWGWRTGFGILAVLSALSWLLIFALVHEPSLPGRAPHAQESWGDSL RGLAELLTLPHTWGILALGMSCYAAFLSLRGLWLGPLLMDRFGFSLVDSGNVALVLSL ISLFAPGAFGRMDPGPLRRRAWVANASLLMAAMFAAMALLQQAGATVALMILLGLLWG FSVLQYTDVRASYPPELTGRALSLYTMSMFLGVALMQSATGAVAAWAAGRGIEPYLAV LLAIAGWLALASLAFRMLPASPLLRR" misc_feature complement(171274..172299) /locus_tag="Alide_0156" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" gene complement(172421..173284) /locus_tag="Alide_0157" /db_xref="GeneID:10102180" CDS complement(172421..173284) /locus_tag="Alide_0157" /EC_number="4.1.3.34" /inference="protein motif:PRIAM:4.1.3.34" /note="KEGG: dia:Dtpsy_0131 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase" /codon_start=1 /transl_table=11 /product="citryl-CoA lyase" /protein_id="YP_004124831.1" /db_xref="GI:319760894" /db_xref="InterPro:IPR005000" /db_xref="InterPro:IPR011206" /db_xref="GeneID:10102180" /translation="MTDLVRNACSFLFVPATQPDRLPKALASGADMVIADWEDAVTPA DKERARSALAGAVAALDGARRARLLVRINAEGTPWFAADLQALQQLMAQGLAGAVVPK AESAQTLQAVARAAGPQAALLPLVESVAGLYAVDVLAAAPQVARLAFGHLDFQVDAGM ACDPDEAELLPMRMAVVLAARRAGMAAPLDGVTVDTRNPERMASDAERARRMGFGGKL CIHPAQVPVLHAAFDPGEAAVAHARRVQQAMQEAGGGVCVLDGRMVDAPVLAQARQTL ERHAHAQRRSA" misc_feature complement(172424..173257) /locus_tag="Alide_0157" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(173317..175637) /locus_tag="Alide_0158" /pseudo /db_xref="GeneID:10102181" gene complement(173667..174755) /locus_tag="Alide_0159" /db_xref="GeneID:10102182" CDS complement(173667..174755) /locus_tag="Alide_0159" /inference="protein motif:PFAM:PF01609" /note="KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase is4 family protein" /protein_id="YP_004124832.1" /db_xref="GI:319760895" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002559" /db_xref="GeneID:10102182" /translation="MRGSQDFQGAMFSYISLEERVPQAHPLRKLRAVVDALLATMNRE FEAVYARRGRPSVPPEMLLKALLLQILFSIRSERQLVEAINYNLLYRWFVGLNIEDKV WDHSTFSANRERLFNEDLARAFFERVKLSAQWGKLASDEHFSVDGTLIDAWASHKSFK RKDDDSGTPPGRNPEVDFKGQERCNDTHESTTDADARLFKKSQGDKSRLCHMGHILME NRNGLIVDVEITHASGTAEREAALAMLERRGNRNKRATVGADKGYDSKAFIKGCRKLK VTPHVAAKDKHSAVDARVTRHEGYKTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQAKL TGQALLCFATYNLVRMGSIGGWWDAHHA" misc_feature complement(174372..174599) /locus_tag="Alide_0159" /note="Transposase domain (DUF772); Region: DUF772; cl12084" /db_xref="CDD:196330" misc_feature complement(173715..174116) /locus_tag="Alide_0159" /note="Transposase DDE domain; Region: DDE_Tnp_1; pfam01609" /db_xref="CDD:144990" gene complement(175711..177096) /locus_tag="Alide_0160" /db_xref="GeneID:10102183" CDS complement(175711..177096) /locus_tag="Alide_0160" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD family protein; KEGG: dia:Dtpsy_0134 MmgE/PrpD family protein" /codon_start=1 /transl_table=11 /product="mmge/prpd family protein" /protein_id="YP_004124833.1" /db_xref="GI:319760896" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10102183" /translation="MKQEIQVSIHPLAQFAAQLQWSDVPAPVQDRAVDLWVDWFGSVL AGCKARPVASIARFALSQGPASGPSEVIAQGASSSPMMAALANAAASHFAEQDDVHNG SVFHPAAVVFPPALAVAQAIGASGAELMAACVAGYEVGIRVGEFLGRSHYKVFHTTAT AGTLAAAAAVGRLLQLTPAQMQHAFGSAGTQSAGLWEFLRTAADSKQLHTAHAAAAGL MAAYLARDGFTGAQDIFTGAQGMAAGMSSDANPARLTDGLPNGGVGRWATAETSFKWH ASCRHTHPAADALQQVMREHGLKPADIAQVTCHVHQGAIDVLGPVVSPTTVHQSKFSM GTVLALAAHFGHAGLTEFDAQFLAPDTVALREKVRMELDAEVDAAYPQRWIGKVTVQT TDGRRLHGRVDEPKGDPGNTLSREEITAKALRLAAYGGAVGTAQATSAVASLWQVAQW PRVGDLLAAGA" misc_feature complement(175750..177063) /locus_tag="Alide_0160" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene complement(177147..178328) /locus_tag="Alide_0161" /db_xref="GeneID:10102184" CDS complement(177147..178328) /locus_tag="Alide_0161" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004124834.1" /db_xref="GI:319760897" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102184" /translation="MPRPLDGITVVSLEHAVAAPFCTRQLADLGARVIKVERPGSGDF ARGYDQRVRGQSSHFTWINRSKESLALDVKQPQAKAALMQLLKTADVLVQNLAPGAAA RMGLSYEALKEHNPRLIVCDISGYGADGPYRDKKAYDLLIQSEAGFLSVTGTPETPSK SGISVADIAAGMYAYSNILSALLLRARTGEGSHIDVSMLEAMGEWMGYPMYYAYQDAP PPPRTGASHASIYPYGPFTAGDGGTVMLGLQNEREWKTFCDAVLQRPEVATDARFCSN AQRNQHRSELQALILEVFAALTAAQVVERLDAAAIANARVNDMAGLWAHPQLKARQRW RSVGTPAGEVPALLPPGVNSAFDYRMDAVPAVGQHTAAILAALGWTDGQIDALQAPQA T" misc_feature complement(177162..178328) /locus_tag="Alide_0161" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(178339..179505) /locus_tag="Alide_0162" /db_xref="GeneID:10102185" CDS complement(178339..179505) /locus_tag="Alide_0162" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_0198 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124835.1" /db_xref="GI:319760898" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102185" /translation="MIEQTSSNNHHEIRDAIRALCAEFPDEYFRKVDEQRAYPAEFVD ALTKAGWMAALIPQEYGGSGLGLTEASVIMEEINRCGGNSGACHGQMYNMGTLLRHGS QAQKEKYLPKIASGEWRLQSMGVTEPTTGTDTTKIKTSAVKKDGRYVVNGQKVWISRV QHSDWMILLARTTPLAEVTKKSEGMSIFMVDLAEAQKKGLTVRPIPNMVNHETNELFF EDLEIPEENLIGEEGKGFKYILDGLNAERTLIAAECIGDGYWFLDRVTSYVKDRQVFG RPIGQNQGVQFPIADAFIEVEAANLMRWKACELFDRHEPMGAQANMAKYLAAKASWEA ANACLQFHGGFGFACEYDVERKFRETRLYQVAPISTNLIYSFVAEHILKLPRSF" misc_feature complement(178342..179472) /locus_tag="Alide_0162" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(178357..179472) /locus_tag="Alide_0162" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(178393..178395,178399..178401, 178405..178413,179032..179034,179038..179040, 179131..179133,179137..179139,179233..179235)) /locus_tag="Alide_0162" /note="active site" /db_xref="CDD:173838" gene complement(179579..180472) /locus_tag="Alide_0163" /db_xref="GeneID:10102186" CDS complement(179579..180472) /locus_tag="Alide_0163" /inference="similar to AA sequence:KEGG:Dtpsy_0137" /note="KEGG: dia:Dtpsy_0137 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124836.1" /db_xref="GI:319760899" /db_xref="GeneID:10102186" /translation="MAAMTDTTIDTALLAHLQTWQGRTETLSDSIAAVPVQALSATLD RDDPAPAAGTPLPPLWHWMYFLPHARASEIGPDGHPKRGGFLPPVPLPRRMWAGGRLA WEPTNPLCVGQQVQRRSTIRSVKHKAGRTGELLFVLVEHQYHNERGLALTEEHDIVYR SAARPGDPAPPPQTPPLAGQQAWSRAIVPDDVLLFRYSALTFNGHRIHYDRKYVTEVE GYPGLIVHGPLIATLLLDLLRREMPGAQVAAFDFRAVRPTFDLHPFSVHGKPSADGRT VELWAQDHEGFLTMQGMATLA" misc_feature complement(179588..180424) /locus_tag="Alide_0163" /note="Uncharacterized conserved protein [Function unknown]; Region: COG3777" /db_xref="CDD:33572" misc_feature complement(179582..179926) /locus_tag="Alide_0163" /note="The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509" /db_xref="CDD:193847" misc_feature complement(order(179702..179713,179792..179797)) /locus_tag="Alide_0163" /note="active site 2 [active]" /db_xref="CDD:48035" misc_feature complement(order(179729..179737,179756..179758, 179765..179770,179777..179779)) /locus_tag="Alide_0163" /note="active site 1 [active]" /db_xref="CDD:48035" gene 180657..181574 /locus_tag="Alide_0164" /db_xref="GeneID:10102187" CDS 180657..181574 /locus_tag="Alide_0164" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_0138 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004124837.1" /db_xref="GI:319760900" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10102187" /translation="MAQKMVQDKVVVVTGAGGGIGRDMALALAAAGAKVVVNDIGTST TGEGQDAGPAQKVVEEIRAAGGQAVANMDSVAEAAAAGRIVQCALDHFGRIDGVVNNA GILRDRFFHKMSLDEWDAVVKVHLYGSYYMARAAANHFKEQESGAFVHMTSTSGLIGN FGQANYSAAKLGLVALSKSIALDMQKFNVRSNCIAPFAWSRMIGSIPTDTPEQQARVA KIQQMTPNKIAPLAVYLLSDAAKDVNAQVFAVRNNEIFLMSQPRPVRSVHRSEGWTPE FIAEHGMPALKSSFVPMERSGDVFSWDPV" misc_feature 180756..181406 /locus_tag="Alide_0164" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(180771..180779,180957..180965,181107..181115, 181152..181154,181164..181166,181242..181253) /locus_tag="Alide_0164" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature 180798..181406 /locus_tag="Alide_0164" /note="short chain dehydrogenase; Provisional; Region: PRK07060" /db_xref="CDD:180817" misc_feature order(181029..181031,181113..181115,181152..181154, 181164..181166) /locus_tag="Alide_0164" /note="active site" /db_xref="CDD:187535" gene 181578..182471 /locus_tag="Alide_0165" /db_xref="GeneID:10102188" CDS 181578..182471 /locus_tag="Alide_0165" /EC_number="4.2.1.107" /inference="protein motif:PRIAM:4.2.1.107" /note="KEGG: ajs:Ajs_0121 dehydratase; PFAM: MaoC domain protein dehydratase" /codon_start=1 /transl_table=11 /product="3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-coahydratase" /protein_id="YP_004124838.1" /db_xref="GI:319760901" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10102188" /translation="MAIDYRHLKNRAFEPVHQHYTERDTMLYALSLGLGNDPLDAAAL PFVYEGMSGGLRALPTLAVVLGYPGFWAREPDTGIDWVKLLHGEQRVRWHRPLPADCE VIGKSRITHLIDKGEGKGAILVTERLLETRAGALLATLQQVTFLRGDGGYSQHGGGQP SDEPLPALQPTPQDRAPDFTDTQAIRPEAALLYRLMGDYNPLHAEPEVARKAGFERPI LHGLASYGLVARAVLRQCAGGDPALLKALDIRFASPVYPGETLVTEIWRVPGQPGKIQ LRARVAERDKVVLSHGYAELA" misc_feature 181581..182465 /locus_tag="Alide_0165" /note="enoyl-CoA hydratase; Region: PLN02864" /db_xref="CDD:178455" misc_feature 182097..182468 /locus_tag="Alide_0165" /note="HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit; Region: HDE_HSD; cd03448" /db_xref="CDD:48043" misc_feature order(182139..182141,182148..182150,182157..182162, 182172..182174,182178..182180,182190..182192) /locus_tag="Alide_0165" /note="dimer interaction site [polypeptide binding]; other site" /db_xref="CDD:48043" misc_feature order(182151..182153,182169..182171,182175..182177, 182184..182186,182235..182237,182241..182243, 182250..182252,182259..182261,182271..182273, 182307..182309,182316..182318,182322..182324, 182328..182330,182370..182372,182406..182408, 182412..182414,182439..182441,182457..182459) /locus_tag="Alide_0165" /note="substrate-binding tunnel; other site" /db_xref="CDD:48043" misc_feature order(182154..182156,182166..182171,182175..182177, 182184..182186,182229..182231,182238..182243) /locus_tag="Alide_0165" /note="active site" /db_xref="CDD:48043" misc_feature order(182169..182171,182175..182177,182184..182186, 182238..182240) /locus_tag="Alide_0165" /note="catalytic site [active]" /db_xref="CDD:48043" misc_feature order(182262..182264,182271..182273,182301..182303, 182307..182309) /locus_tag="Alide_0165" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:48043" gene 182553..183347 /locus_tag="Alide_0166" /db_xref="GeneID:10102189" CDS 182553..183347 /locus_tag="Alide_0166" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_0140 enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004124839.1" /db_xref="GI:319760902" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="InterPro:IPR018376" /db_xref="GeneID:10102189" /translation="MSASPVLTSVQDGVGTITLNRPEARNALNQAMRPALAAAIAQMR DDKEVYAVILTGAGGAFCSGGDISAMLDTSRTGLTFRAGMRELHQWFPELVNLEKPVI AAVDGPAFGAGLSLALSADFVLATRRARFCAVFGRIGLIPDLGALHLLPRIVGMQKAK ELVFTARTVEVEEARQLGMVYDVVEDGAALHAAALALARRFGEASTAAIGMAKTIMNQ SFESSARTIAELESYGQAMCRGSAYHQEAVQRFKDKQPLRFDWDKK" misc_feature 182553..183320 /locus_tag="Alide_0166" /note="Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Region: CaiD; COG1024" /db_xref="CDD:31227" misc_feature 182568..183113 /locus_tag="Alide_0166" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(182625..182627,182631..182633,182727..182729, 182739..182753,182874..182876,182880..182888, 182952..182957,182964..182966) /locus_tag="Alide_0166" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(182745..182747,182886..182888) /locus_tag="Alide_0166" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(182826..182828,182850..182852,182913..182924, 182958..182969,182985..182987,182991..182999, 183003..183008,183021..183026,183030..183035, 183039..183044,183051..183053,183084..183086, 183093..183095) /locus_tag="Alide_0166" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 183484..184767 /locus_tag="Alide_0167" /db_xref="GeneID:10102190" CDS 183484..184767 /locus_tag="Alide_0167" /inference="protein motif:PFAM:PF02550" /note="PFAM: acetyl-CoA hydrolase/transferase; KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA hydrolase/transferase" /protein_id="YP_004124840.1" /db_xref="GI:319760903" /db_xref="GO:0003824" /db_xref="InterPro:IPR003702" /db_xref="GeneID:10102190" /translation="MSALADRLRQLIRPGDTLWWGQTTAEPLTLTRAVTAHRHALAQG ARLRVFVGIAASDTLAPEQADAIDFFGYAAGGAHRRLADAGVLDILPCHYSHLPGLIR AGVLPVDVVLLQVSPPDEQGRYSLGLAQEYLPAALEKARVVIAEVNPGIPWTHGGVHL RTGDFALCIDAEHPPLEQSRSAPGPAEQAIARHIAALVEDGATLQLGVGNLPEAVLAA LHGHRDLGLHSGAVGDGIARLAEAGVLTNAKKSVDAGVGVGGILMGSECLRRWAHRNQ QLALRGTEYTHDPEVLAASHKLAAINAAIEVDLTGQINAEVAAGCYVGAVGGAVDFLR GAARSKGGLPIVALPATAKGASRIVARLSGPVSTPRSDAGLIVTEHGVADLRGQPLSR RVRRLIDIAAPEHREDLERQAYETLRRCGAAFNQK" misc_feature 183484..183951 /locus_tag="Alide_0167" /note="Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550" /db_xref="CDD:111448" misc_feature 183496..184761 /locus_tag="Alide_0167" /note="Acetyl-CoA hydrolase [Energy production and conversion]; Region: ACH1; COG0427" /db_xref="CDD:30776" gene 184834..186042 /locus_tag="Alide_0168" /db_xref="GeneID:10102191" CDS 184834..186042 /locus_tag="Alide_0168" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ajs:Ajs_0124 acetyl-CoA acetyltransferase; PFAM: Thiolase-like" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004124841.1" /db_xref="GI:319760904" /db_xref="GO:0003941" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10102191" /translation="MRRAAIVTPVRTPVGTFGGSLRPVPVEELAATTVRAVVQKSGID PARIDDVVMAQSYANSEVPCVGRWAALQAGLPVEVPGMQLDRRCGGGLQAIVTASMMV QSGAADVVIAGGVESMSNIEYYSTDMRWGARSGNVRFYDRLDRGRERSQPVERFGKIS GMIETAENLARDYSITRDEADAYALRSHQRAAAAWAAGRFADEVVPVQVPQRKGDPVT FARDEGFRADVTTESLAKLRVLMPNGTVTAGNASQQNDASAACLIVAEDKLAELGLTP MATLVGWAAAGCEPSHMGIGPVPAVKKLLARLSLKIDDMDLVELNEAFACQVLAVLKG WGWQDQGAIEHKLNVNGSGISLGHPIGATGVRILATLLHELQRRKGRYGLETMCIGGG QGIAAVFERV" misc_feature 184834..186039 /locus_tag="Alide_0168" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK06205" /db_xref="CDD:180468" misc_feature 184846..186036 /locus_tag="Alide_0168" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(184900..184902,184981..184983,185023..185025, 185032..185034,185044..185046,185077..185088, 185110..185112,185131..185136,185143..185145, 185188..185190,185680..185682,185686..185688, 185692..185694,185752..185754,186004..186009) /locus_tag="Alide_0168" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(185095..185097,185905..185907,185995..185997) /locus_tag="Alide_0168" /note="active site" /db_xref="CDD:29411" gene complement(186057..186980) /locus_tag="Alide_0169" /db_xref="GeneID:10102192" CDS complement(186057..186980) /locus_tag="Alide_0169" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_0188 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124842.1" /db_xref="GI:319760905" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102192" /translation="MDLNLVRMFIAIAESRNLTDAARRSGMTRSNVSRRLKALEREYG AQLLRRTTRHVELTQAGRILYGHCQQAMNELQDAQRKIEQMHRTVSGEIRVRIPTGLG HFYLKPLILEFCKNHPELQLRLVINDQIHDLVASKVDLAIHITSAPLVDHVATKVCDI RWCLVCTPQYLQQHALHLEQPVDLKQARLIAPLALGQRVEFTGPGGAGKVLVQHGASI QSGDYQFLFNAASQGLGIALLPSYAVCEALKRGDLVRVLQRYEVMGIGNALYVVRASN RQPSAATVAFIDLLTTSVRAMAPHWDLHDAP" misc_feature complement(186081..186980) /locus_tag="Alide_0169" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(186795..186974) /locus_tag="Alide_0169" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(186111..186710) /locus_tag="Alide_0169" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422" /db_xref="CDD:176114" misc_feature complement(order(186174..186176,186261..186263, 186312..186314,186501..186503,186507..186509, 186549..186551,186666..186668,186678..186680)) /locus_tag="Alide_0169" /note="putative effector binding pocket; other site" /db_xref="CDD:176114" misc_feature complement(order(186285..186287,186294..186299, 186318..186332,186417..186419,186603..186623, 186627..186629,186639..186641,186648..186653, 186657..186662,186672..186677)) /locus_tag="Alide_0169" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176114" gene 187158..188342 /locus_tag="Alide_0170" /db_xref="GeneID:10102193" CDS 187158..188342 /locus_tag="Alide_0170" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_0189 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004124843.1" /db_xref="GI:319760906" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102193" /translation="MGTTPVQELMPLQGFTVLDLSQGVAGPYCAQLLAGQGARVIKVE PPQGDWGRHVGVASDGHSTISSTYNSGKQSLAIDARRPEGRAVILRLAERADVIVQNF RPQVVERLGLDYESLRARGLGPVYVSISGYGPDGPFADHPATDSVMQADSGLMHTNRD AGGTPQRIGLLLADIAAGVYAAQACTAALLHKTRTAEGSHVQISLFNVCCALQSTVFS EELAGAQAARQPVSAPNGIFDAADGKLTILALNNEQFLRICKAFDLRHWETDPRFASN ALRLEHKALLHAELSRKVAPQSLAQLEALLGQHQVLHARVREGRGVVEHPQARHLHTF QTIEQPGFGPLLWAAAPWACHAGAAQPAPRIGEHSQAILHGLGLDAQEIAALVAQQVV AV" misc_feature 187188..188306 /locus_tag="Alide_0170" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 188357..189382 /locus_tag="Alide_0171" /db_xref="GeneID:10102194" CDS 188357..189382 /locus_tag="Alide_0171" /inference="protein motif:PFAM:PF00107" /note="PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_0190 alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase zinc-binding domain protein" /protein_id="YP_004124844.1" /db_xref="GI:319760907" /db_xref="GO:0008270" /db_xref="GO:0016491" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="GeneID:10102194" /translation="MNTMKALVCREFGPPQDVVALQDVAPAPRAGMDEVLIEVHYATV SHATGLLIEGRYQKTPPLPFVPGTEGVGRVLACGGDVGHVRPGDLVAFICDWGAYGEQ IVVHGATVYPIVAGLGALQALAVPISYGTAYAALHWRAQLRQGDTVLVLGAGSGVGAA AVELARLVEGVTVIACASSAQKRQAALQGGAHHAVGPDGLIGQVKQLTQGRGADLVFD PVGGDLLLQALRCTAQNGKIVSIGFASGTIPQVPMNILLVKNLTVFGFFYGQYIGWTP ANERVKYAAQMQAMMAELFALARRGAIHPAVTQVFPMDQLCQALSALHGRNVVGKVAL AIKGDIP" misc_feature 188366..189364 /locus_tag="Alide_0171" /note="NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604" /db_xref="CDD:30949" misc_feature 188366..189358 /locus_tag="Alide_0171" /note="Quinone oxidoreductase (QOR); Region: QOR1; cd08241" /db_xref="CDD:176203" misc_feature order(188489..188494,188735..188737,188747..188749, 188810..188812,188819..188827,188885..188890, 188900..188902,189011..189013,189077..189082, 189086..189091,189152..189160,189332..189334, 189338..189340,189344..189346) /locus_tag="Alide_0171" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176203" gene 189379..190404 /locus_tag="Alide_0172" /db_xref="GeneID:10102195" CDS 189379..190404 /locus_tag="Alide_0172" /inference="similar to AA sequence:KEGG:Daci_0191" /note="KEGG: dac:Daci_0191 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124845.1" /db_xref="GI:319760908" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102195" /translation="MKQHPHHATPAWHGSRRKALQALASAAALGAAALAPAVARAATD YPKAPIRLVVPYPPGGPTDLVGRVVAVAMGDILKQSIFVDNKPGASGMVGSAMVAKAP ADGYTLLSNASLHVINPAVYDKVPYDAFNDFAPITQIVDVPLVLVVRSDMPVSSVQEL IAYLKQSKGAVNFASAGNASSQHLSGELFKIRTGIAMQHVPYKGSSPALTDLMGGQVQ LMFDSMPSAMPFITSGKLKALAVTTRKRSSSLPQVPTMQEAGVAGFETSTWYGLWAPR NTPADVVGVLAKAAQEALRKPEVAAQYQRMGAEPVGSSPQEFEAYMKSEEKKWAEIVR LSGAKAD" sig_peptide 189379..189504 /locus_tag="Alide_0172" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.955 at residue 42" misc_feature 189505..190389 /locus_tag="Alide_0172" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 189571..190392 /locus_tag="Alide_0172" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(190435..191343) /locus_tag="Alide_0173" /db_xref="GeneID:10102196" CDS complement(190435..191343) /locus_tag="Alide_0173" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_3679 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124846.1" /db_xref="GI:319760909" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102196" /translation="MKILSPSLIELHAFLAVCRQGSFRRAADDLCVTQAAVSRAVQRL EEHLAAGRLFERSPAGVVLTPRGAQWRKLVERHVLALESAAETLGRASRPRLVRLSVI PTLSIQWLMPRLPGFHERSPGVKVELRQFRHDEDFTRDDVDLWLDVKRPSRRWPERIQ TRYLIGRELIPVCTARLAKAYRTPRDLQGATLLHHTNFPDNWARWFAKAGAPCTPRLG PGFDLTMHLIVAAKAEMGVAVVPACLVERELRAGELVMPFDVEVSSGRGYFLCWKRDA AAFAAREEFSGWLLEQAHAGGGPGAG" misc_feature complement(190465..191328) /locus_tag="Alide_0173" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(191143..191313) /locus_tag="Alide_0173" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(190477..191055) /locus_tag="Alide_0173" /note="HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432" /db_xref="CDD:176123" misc_feature complement(order(190954..190974,190978..191031, 191035..191055)) /locus_tag="Alide_0173" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176123" misc_feature complement(order(190612..190614,190672..190680, 191029..191031,191035..191040)) /locus_tag="Alide_0173" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176123" gene 191452..192435 /locus_tag="Alide_0174" /db_xref="GeneID:10102197" CDS 191452..192435 /locus_tag="Alide_0174" /inference="similar to AA sequence:KEGG:Aave_3678" /note="KEGG: aav:Aave_3678 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124847.1" /db_xref="GI:319760910" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102197" /translation="MPINRREFVGLAAAGSLAPWVHAHAADAYPSKPITLVVPFTPGG SVDNSGRLMADRLSRELGVPVIVDNKGGAGGALGSAFVAKAKPDGYTLVVASQSTHVV NPAVNPNLPYDAVKDFAPITLIDRLANVLLVNASVPVQTFADLVKYAQANPGKLNYAS AGVGSVSHLSMELLKTQARIHVTHIPYRGAGVALTDLLAGQVQLAWNNLSSNLPNIRN GKLRALAVAAPQRVPQLPSVPTFAELKLPDLNLTSWTGLAAPAHTPDVIIGRLYSAVR KVLQDPATQATWVERGMMVPEDVKPQAYQAEIVERIKFYQRIAKANNIVIE" sig_peptide 191452..191529 /locus_tag="Alide_0174" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.890 at residue 26" misc_feature 191473..192426 /locus_tag="Alide_0174" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 191599..192423 /locus_tag="Alide_0174" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 192432..193631 /locus_tag="Alide_0175" /db_xref="GeneID:10102198" CDS 192432..193631 /locus_tag="Alide_0175" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="TIGRFAM: amidohydrolase; KEGG: aav:Aave_3677 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004124848.1" /db_xref="GI:319760911" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="InterPro:IPR017439" /db_xref="GeneID:10102198" /translation="MSAAPDRRAAYARIDQLLPYEQELVAIRRHLHQNPELAFAEHGT ADFVAGRLQEWGYEVARGIGGTGVVGTLRQGDGSRRLGIRADMDALPIQEATGAAHAS RAPGLMHACGHDGHMAMLLGAAKYLARQRNFSGTLHLIFQPAEERGFDSGGKAMVDDG LFERFPCDAVYAMHNHPGVPQGRFLLRSGAFMAAGDRVFIKVLGVGGHAARPHLAADP LVAAAAIVTGLQTVVARNVDPAESAVVTVGRLRAGDALNVIPADAEIGISVRSFAPQV RALLKERITALATGIAQAHGTRAEIDYVEGYPVLVNDPEAVALAAQVATDLVGADAVD LEHPRLMGSEDFAYMLQRCPGALVRIGNGPADGGRGLHNPKYDFNDCNLPYGAAFWSQ LAQRFLC" misc_feature 192468..193625 /locus_tag="Alide_0175" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature 192495..193619 /locus_tag="Alide_0175" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature order(192762..192764,192768..192770,192867..192869, 192951..192953,193545..193547) /locus_tag="Alide_0175" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature order(193020..193022,193086..193091,193101..193103, 193110..193112,193119..193121,193170..193190, 193200..193205,193209..193211,193227..193235) /locus_tag="Alide_0175" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene 193811..194791 /locus_tag="Alide_0176" /db_xref="GeneID:10102199" CDS 193811..194791 /locus_tag="Alide_0176" /inference="similar to AA sequence:KEGG:Ajs_0125" /note="KEGG: ajs:Ajs_0125 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124849.1" /db_xref="GI:319760912" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102199" /translation="MLTPTRRLALAALAITPSLLAALPAAAQDAQPVRLIVGYAAGGP VDQGARLFGQALSKELGMPVMVENKPGANATIAGNEVVRAKPDGLTLWFAASPTITIS PNVMTKMPFDPAKDLAPVAPILSYYNVLVVNNNEPYKNVRELVAYAKANPGKLAYGSA GVGGSNHLGALLFARRSGIEMNHIPYKGNAPAMTDVIGGQLNMMLDIISTASSYIHSG KVRAIAVTSPQRNASLPDVPTFAESGIEGLKGFDVGGWYGVYGPKGMAPELVAKLNKA TNAALAQPDLKKRYKDLGYDEWTGNPQKLAERAAKERAMWATVTQGITVD" sig_peptide 193811..193894 /locus_tag="Alide_0176" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 28" misc_feature 193955..194773 /locus_tag="Alide_0176" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 194793..196301 /locus_tag="Alide_0177" /db_xref="GeneID:10102200" CDS 194793..196301 /locus_tag="Alide_0177" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_0144 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004124850.1" /db_xref="GI:319760913" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10102200" /translation="MAERIHQLLDRWLAEAPGQPFIHLPDGRSLSFADLGALTDAAEA ELRALGVRAGDRVLVVAENCPEHAALILACSRVGAWSCGVNARMAPGEVDAFAAKADA RVLYFTASSSRSAAAHAARHAAVASVLPGMQHGAARDEATVEPPPLQDDVAALIFTSG TTGAPKGVMVTHEALIHFARVSAASRGLGPQDRCYAFVPMTHIFGLATVLLTSLHAGA QLVLRPQFDPEDLLDALAHHGVTQLQGPPALFSRLLAHLRERSIAHPEAPLLRYVYTG AGPLDLTLKQRVEAAFGQALHHGYGLSEYAGSVHLTRLSEQRPDTSVGYVVQDAEVQV TDPASGRPVPTGERGELWIRGRGLMRGYFRDPQATNAVMRDGGWYASGDLGELHADGA LFVVGRLKEMIIRSGFNVYPAEVELALNQLPGVQRSAVVGRPEKDGNEEVIAFVELSA GATFDEAAARARLREQLAPYKQPSHIVTVAELPTSHNGKVLKRRLQEQAAKL" misc_feature 194802..196295 /locus_tag="Alide_0177" /note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: CaiC; COG0318" /db_xref="CDD:30666" misc_feature 194928..196286 /locus_tag="Alide_0177" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 196319..197302 /locus_tag="Alide_0178" /db_xref="GeneID:10102201" CDS 196319..197302 /locus_tag="Alide_0178" /inference="similar to AA sequence:KEGG:Dtpsy_0145" /note="KEGG: dia:Dtpsy_0145 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124851.1" /db_xref="GI:319760914" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102201" /translation="MPIHMTRRSLVAGGLLAAAAQPFAALASDAWPTKPVRFIVPFPP GGPVDTTARAASVKLSEIWKTPTVIDNRAGAGGVVGAQAAAREAPDGYTLFMGAIHHS VNPTLMGNLPYDIERDFAPISFAAMFPVFIVAHQSVPANTLKELIALARKPGSNLSYG SSGNGGGTHLAGELFNMEAGTKLQHVPYKGSAPAMNDLLGGQVQLMFSDAPTALPHIK SGRIKVLAVASRQRSAMLPDVPTAAEAGLPGYEAYSWAALFAPAKTPQAVLDKINADF NTAFRDPAVRQRLLDAGAEAAPGTQQEMRQFLRSELAKWAKVIKTAGITAG" sig_peptide 196319..196402 /locus_tag="Alide_0178" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 at residue 28" misc_feature 196409..197290 /locus_tag="Alide_0178" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 196472..197290 /locus_tag="Alide_0178" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(197357..198358) /locus_tag="Alide_0179" /db_xref="GeneID:10102202" CDS complement(197357..198358) /locus_tag="Alide_0179" /inference="similar to AA sequence:KEGG:H16_B1474" /note="KEGG: reh:H16_B1474 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004124852.1" /db_xref="GI:319760915" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102202" /translation="MRTFTRRHFLQSAGATCTLAGLPAWAADAFPAKPLTLVVPYPAG GASDASARIFAESFTQSLNQQVIVENYGGGTGLIGANKVLSAPADGYTFLHGSPNEVI LPPMLNPAARYKPWDFVFAAPITTASIVLLVRNGIPVGTMDEFLDYARQQKDKPLTYA SVGIDSLYHLMGDALAMRLNLPFLHVPYKGAAPALQDLAGGQVDFGILPYQTSFDGMQ AQGRLKVISSFSKDMAPGLKHIAPITQSKQIPDFVHEIGGGYFMRKGTPADRVAALRK AIGEAVVKPEIRSRLEAEGRKVAQPTETQAQADAAFKEMTDRIAALLKVLGRKNLAL" sig_peptide complement(198278..198358) /locus_tag="Alide_0179" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 27" misc_feature complement(197378..198343) /locus_tag="Alide_0179" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(197378..198208) /locus_tag="Alide_0179" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(198379..199560) /locus_tag="Alide_0180" /db_xref="GeneID:10102203" CDS complement(198379..199560) /locus_tag="Alide_0180" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="PFAM: peptidase M20; peptidase dimerisation domain protein; manually curated; KEGG: reu:Reut_B4300 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004124853.1" /db_xref="GI:319760916" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="InterPro:IPR017439" /db_xref="GeneID:10102203" /translation="MDPSVSTALLHAMRALSPEFIAIRRDLHAHPELAFEERRTSDLV AERLAAWGYQVHRGLGGTGVVGTLRKGGGSRSLGIRADMDALPIQEKTGLDYASRHVG KMHACGHDGHTAILLCAARYLAESADFSGTLHLIFQPAEENEGGALRMVDEGLFTLFP CDEVYALHNSPGLPVGQMAISPGPLMASFDRATVTLRGRGAHGAMPHHGIDPMQCAAS ITLGLQSIVSREIDALKSAVITVGSIQAGEAYNVVPESAQLKIGVRTLDPRVRTLVEQ RIREFIAAQAQSYQLQAEVVYERKYPVLVNHAVQTEVLRQAAMRLVGADSVVERPPVM GSEDFAYMLEHRPGAYIRLGNGTGEDGGCNVHNPLYDFNDNALPIGAALWVHLAQSSL V" misc_feature complement(198394..199527) /locus_tag="Alide_0180" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature complement(198394..199509) /locus_tag="Alide_0180" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature complement(order(198463..198465,199057..199059, 199135..199137,199234..199236,199240..199242)) /locus_tag="Alide_0180" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature complement(order(198775..198783,198799..198801, 198805..198810,198820..198840,198889..198891, 198898..198900,198907..198909,198919..198924, 198988..198990)) /locus_tag="Alide_0180" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene 199825..200244 /locus_tag="Alide_0181" /db_xref="GeneID:10102204" CDS 199825..200244 /locus_tag="Alide_0181" /inference="protein motif:PFAM:PF01796" /note="PFAM: protein of unknown function DUF35; KEGG: ajs:Ajs_0128 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124854.1" /db_xref="GI:319760917" /db_xref="InterPro:IPR002878" /db_xref="GeneID:10102204" /translation="MLASDTTYQPLPMHLSAQTHYQAELDAGRFCIQRCPQCQNHVFT PRELCPHCGAGGLRWVRASGLGTVYSTSTIARKQDAGGNYNVALIDLDEGVRMMSRVE GLAPEGVAIGLRVQAHVAQKDGRGLVLFQPAAQGGAA" misc_feature 199897..199998 /locus_tag="Alide_0181" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" misc_feature 199999..200175 /locus_tag="Alide_0181" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene 200241..201449 /locus_tag="Alide_0182" /db_xref="GeneID:10102205" CDS 200241..201449 /locus_tag="Alide_0182" /inference="similar to AA sequence:KEGG:Ajs_0129" /note="KEGG: ajs:Ajs_0129 thiolase" /codon_start=1 /transl_table=11 /product="thiolase" /protein_id="YP_004124855.1" /db_xref="GI:319760918" /db_xref="InterPro:IPR002155" /db_xref="GeneID:10102205" /translation="MSRIPRSHLDAAAVNRPLRGRVAIAGAATYGCGEAPGMDDMTLL VRAAQAAVADAGLSMQDIDGLATCSVNASMWPMPVIEHLGINPTYVDGTMIGGSSFIA HLLPAIRALEAGQCKAVLVCYGSAQRSATFGRKESQAARRFLDPQPYEFPYEPVLPVT AYALAAARHMHEFGTTRTQLAEVAVAARAWAQQNPEAFMRDPLTIEDVLAARPIASPL TVRDCCLVTDGGGAIVLTRAERARDLPRPPVYVLGNATAIWNRQISCMPDLTTTSASQ SGAQAFAMAGLKAADMDMAQVYDAFTINTILFLEDLGFCAKGEGGAFVENGGIAPGGR LAVNTNGGGLSCVHPGMYGIFALIEAVRQLRGEAGARQLKRHSTAVVHGNGGTLSSQS TAVLGTTETL" misc_feature 200277..201446 /locus_tag="Alide_0182" /note="thiolase; Provisional; Region: PRK06158" /db_xref="CDD:180434" misc_feature 200313..201425 /locus_tag="Alide_0182" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature order(200529..200531,201132..201134,201282..201284) /locus_tag="Alide_0182" /note="active site" /db_xref="CDD:29416" gene 201469..202626 /locus_tag="Alide_0183" /db_xref="GeneID:10102206" CDS 201469..202626 /locus_tag="Alide_0183" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_0148 acyl-CoA dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124856.1" /db_xref="GI:319760919" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102206" /translation="MIRDPEILEALLDSVRRFVRERLVPAENEVAETDEIPETIVQEM RELGLFGMTIPEKFGGLELTMEEECRVLLELCQTAPAFRSVIGTTVGIGSQGILMDGT PEQQAQWLPKLATGEVIASFALTEPEAGSDAASLRTTAILQGDHYVVNGTKRFITNAP HAGMFTLMARTNPQDKGAGGVSSFIVDAKSPGISFGKYDKKMGQRGAHTCDVIFDNVK VPAANLIGLKEGQGFKTAMKVLEKGRIHIAAVAVGVAKRILRDALAYALERKQFGQPI CEFQLVQAMLADSQAELYAAECMTIDAARRRDDGHNVSTEASCAKMFATEMCGRVADR AVQILGGAGYMAEYGIERFYRDVRLFRLYEGTTQIQQIIIARNMVRAARAA" misc_feature 201481..202620 /locus_tag="Alide_0183" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 201484..202608 /locus_tag="Alide_0183" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(201742..201744,201832..201834,201838..201840, 201931..201933,201937..201939,202552..202560, 202564..202566,202570..202572) /locus_tag="Alide_0183" /note="active site" /db_xref="CDD:173838" gene 202623..203054 /locus_tag="Alide_0184" /db_xref="GeneID:10102207" CDS 202623..203054 /locus_tag="Alide_0184" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; KEGG: dac:Daci_0175 thioesterase superfamily protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004124857.1" /db_xref="GI:319760920" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10102207" /translation="MSEAGLPPDRNAFMRLIGAAQVPAPPGKVHMRLPHMREELLNQL PAAHGGVVMTLLDSVMARAAAELPTAPSRTAVTVEMSSRFHRPARGALLAEGWVVHAS RSLCSCAAQLLDADGRLVATASGTFKYWLGKTSAGHPPSGG" misc_feature 202668..203006 /locus_tag="Alide_0184" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(202761..202763,202851..202853,202872..202883) /locus_tag="Alide_0184" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(202764..202766,202770..202772,202779..202781, 202854..202868,202872..202874) /locus_tag="Alide_0184" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(202767..202769,202791..202796,202803..202808, 202851..202853) /locus_tag="Alide_0184" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(203051..203800) /locus_tag="Alide_0185" /db_xref="GeneID:10102208" CDS complement(203051..203800) /locus_tag="Alide_0185" /inference="protein motif:PFAM:PF09339" /note="KEGG: vei:Veis_2216 regulatory proteins, IclR; PFAM: regulatory protein IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="regulatory protein iclr" /protein_id="YP_004124858.1" /db_xref="GI:319760921" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10102208" /translation="MPPSHPVNGAQSVERACALLRRIAAGHAEGVPLRRLVDDTGLDR TTAWRLVSSLAAQGLVHKDEATGLYHLGLEAAALGAACMDRSPLVRACLPAMKALARL SGDNVFLVVRSGDHSHCLHLEEGEHRVRSFALNVGGTRLLGQGVGSIALLARLGDDAL VAHYRRHEAEYQADDVGLARLRRWAVQTRDCGHSYGSSGGVAGIGLGFRVGSCADAAL SVIAPRSRLPRSRGAELALAMRREMGAWRLL" misc_feature complement(203075..203770) /locus_tag="Alide_0185" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(203498..203770) /locus_tag="Alide_0185" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 203931..204917 /locus_tag="Alide_0186" /db_xref="GeneID:10102209" CDS 203931..204917 /locus_tag="Alide_0186" /inference="protein motif:PFAM:PF10518" /note="PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: vei:Veis_2212 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124859.1" /db_xref="GI:319760922" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="InterPro:IPR019546" /db_xref="GeneID:10102209" /translation="MTANIDRRHLVQGLAAATALTALGARAQATPFPSRPVTLVVPFP AGGATDSLVRQIAELAGRELGQPVVVENKPGAAGVLGANHVVRAAPDGYTLSVLPEPV FRLPHLQKTAFDPMNDFSYVIHLSGYALGIAVRNDAPWRDWAGVVAEAKKRPGQISYG TTGINGTMHVTVEEMAQRAGVRLNHVPYKGESEIIAALMGGHIDLGVTAGGIAPMVDD GRARVLVLWTARRAPRWPGVPTLREIGIDMVANSPFGIAGPKGLPPAVVKTLHDAFRK ALEAPATRATLERLNQESAYLDSEAYAAFARERYETSRQQVQRLGLKPNAQQ" sig_peptide 203931..204014 /locus_tag="Alide_0186" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.740 at residue 28" misc_feature 204024..204896 /locus_tag="Alide_0186" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 204090..204827 /locus_tag="Alide_0186" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 204914..205774 /locus_tag="Alide_0187" /db_xref="GeneID:10102210" CDS 204914..205774 /locus_tag="Alide_0187" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vei:Veis_2211 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004124860.1" /db_xref="GI:319760923" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10102210" /translation="MNYRSIYRPGLFAGQVIAITGGGSGIGRCTAHELASLGASLALI GRNADKLQAVAGEIGQPDRVSTHACDIRDEEAVRATVAAIVARHGRIDGLFNNAGGQF PAPLRDISQKGWEAVVRNNLTGGFVMARECFTQWMEAHGGSVVNVIADMWNGMPGMGH SGAARAGMLNFTETAACEWAASGVRVNAVAPGWIASSGLDTYPDAFKARIQTLARKVP LQRLGTEAEVSAAVVFLLSAAAAFVTGTTLRVDGGVPNAKHTWALPAHANSQPYDGFP LYQKPGFLES" misc_feature 204944..205675 /locus_tag="Alide_0187" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 204947..205672 /locus_tag="Alide_0187" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(204974..204976,204980..204985,204989..204991, 205046..205054,205202..205210,205352..205360, 205394..205396,205406..205408,205484..205495) /locus_tag="Alide_0187" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(205274..205276,205358..205360,205394..205396, 205406..205408) /locus_tag="Alide_0187" /note="active site" /db_xref="CDD:187535" gene 205774..206922 /locus_tag="Alide_0188" /db_xref="GeneID:10102211" CDS 205774..206922 /locus_tag="Alide_0188" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124861.1" /db_xref="GI:319760924" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102211" /translation="MLQAPNPRHYTAEHETLRATVRRFFEKEVAPHVSAWDEAGGFPR DLYRKAAEAGLLQLGFPEAYGGVECDAFHRMILFEERAWGGSGGVASGLFSHTIGAPP IAVAGSEALKARVLPGILAGEQISALAITEPGGGSDVAQLATTARRDGGHYVVNGSKL FITSGMRADWFTVAVRTGGPGAAGVSLLLVPGDTPGLTRSPLQKMGWWASDTAEIGFT DCRVPVENLLGDEGQGFAILMRNFNHERLALAAAACGYAQVCLHDAVAWARERRTFGQ PLSERQVIRHRLVDMATRIEATRALLDDLASRLDAGESPAAQIAMAKNFATRTFQFCA DAAVQILGGMGFMRGTRVERLYREVKVMMIGGGAEEVMKDLIAKRLGL" misc_feature 205801..206919 /locus_tag="Alide_0188" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 205807..206916 /locus_tag="Alide_0188" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(206065..206067,206155..206157,206161..206163, 206254..206256,206260..206262,206860..206868, 206872..206874,206878..206880) /locus_tag="Alide_0188" /note="active site" /db_xref="CDD:173838" gene 206972..208591 /locus_tag="Alide_0189" /db_xref="GeneID:10102212" CDS 206972..208591 /locus_tag="Alide_0189" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4" /note="KEGG: reu:Reut_B4463 propionyl-CoA carboxylase; PFAM: carboxyl transferase" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase" /protein_id="YP_004124862.1" /db_xref="GI:319760925" /db_xref="InterPro:IPR000022" /db_xref="InterPro:IPR011762" /db_xref="InterPro:IPR011763" /db_xref="GeneID:10102212" /translation="MIPFASHIHPASEDFQSQRAGMLGLVGQLRALEQRAADASARAA SSFAKRGALLPRERVARLLDPGMPFLPLCNLAGYGMDDPDPERCIPGGSQIAGIGFVS GVRCMVVATDSGIDAGALTEAGNQKLMRCQDIALENRLPFVHLVESAGSNLRKYRVDK FIRGGGMFYNLARLSASGLPVVTVVHGSSTAGGAYMPGLSDYVVMVRGRAKAFLAGPP LLKAATGEVATDEELGGTAMHASVSGLAEYVAEDDAHAIALARDILATLDWNDGMPAP GPDAEPPHLDPDELAGVMVLEHRKPVDMREVIARLVDGSRWMDFKPDYGAATVCGHGR IEGHAVGFVSNNGPIDPAGATKAAQFIQLCNQSGTPLVFLQNTTGFIVGRTSEEAGMI KHGSKMIQALANSRVPQITIHCGASFGAGNYGMCGRAFRPRFCFSWPNARTAVMGGEQ AATTLEIVARQQAERKGAPVDEDRLAAQKAEIVANFSAQASAFYTSGHLLDDGVIDPR DTRAVLAFVLATAREAEARQPRAVQFGVARF" misc_feature 207005..208588 /locus_tag="Alide_0189" /note="3-methylcrotonyl-CoA carboxylase, beta chain; Region: PLN02820" /db_xref="CDD:178415" misc_feature <207254..>207586 /locus_tag="Alide_0189" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" misc_feature <207914..>208249 /locus_tag="Alide_0189" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 208602..209765 /locus_tag="Alide_0190" /db_xref="GeneID:10102213" CDS 208602..209765 /locus_tag="Alide_0190" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reu:Reut_B4462 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124863.1" /db_xref="GI:319760926" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102213" /translation="MLYTPEHHELMASIRRFIAAEIDPFVDEWEANEIFPAPELFKKM GRLGFLGITKPEAYGGMGLDFSYALAAAEAIGHARAQGVGMGIGVQSNMATPALAAFG SDELKREFLAPAIAGDVVVSIGVSEQGAGSDVSSLKTRARRDGDDYVISGSKMWITNG TQADWICLLCNTSDGPVHKNKSLIVVPLKENGKRAKGVEVQKIKKFGMWSSDTAQIFF DEVRVPVRHRIGEEGMGFIYQMKQFQEERLDGAARRLASIDLINETADYLRQRIAFGR PLLDNQFIQYKLAELKTELEALRSLTYRATLAYVNGEDVIELASMAKLKAGRLGREIA DWCMQFQGGMGYTWDNRVSRAYRDYRLGSIGGGADEVMMMVIARKMGLMDMGA" misc_feature 208602..209750 /locus_tag="Alide_0190" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 208614..209744 /locus_tag="Alide_0190" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(208878..208880,208968..208970,208974..208976, 209067..209069,209073..209075,209688..209696, 209700..209702,209706..209708) /locus_tag="Alide_0190" /note="active site" /db_xref="CDD:173838" gene 209767..210588 /locus_tag="Alide_0191" /db_xref="GeneID:10102214" CDS 209767..210588 /locus_tag="Alide_0191" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_2207 enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004124864.1" /db_xref="GI:319760927" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10102214" /translation="MSSAPPVLLRREHDVLFATLNRPETRNALAPEVVAALMQAVAQA ESDAAVRALVLRGAGGFFCAGGNVGNFQARLDADAAGEDPVAARNREFGRFMQRLAAL PVPVIAVVEGAAMGGGMGLACAADLVLATQDAKFALSETSLGIIPAQIAPFVAARLGR RAALRLGLFGERVAGGAAQALGLVDELAFDGAALDALLAQWLTRLCACAPGANRALKP LLRRCGREDDGALLDDAARLFAACMRSEGAEGIAAFREKRPAAWRHEFTADAVRS" misc_feature 209785..>210207 /locus_tag="Alide_0191" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature 209821..210555 /locus_tag="Alide_0191" /note="enoyl-CoA hydratase; Provisional; Region: PRK07468" /db_xref="CDD:180987" misc_feature order(209842..209844,209848..209850,209944..209946, 209956..209970,210103..210105,210109..210117, 210181..210186,210193..210195) /locus_tag="Alide_0191" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(209962..209964,210115..210117) /locus_tag="Alide_0191" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" gene 210602..212596 /locus_tag="Alide_0192" /db_xref="GeneID:10102215" CDS 210602..212596 /locus_tag="Alide_0192" /inference="protein motif:PFAM:PF02786" /note="PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: reu:Reut_B4460 carbamoyl-phosphate synthase subunit L" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase l chain ATP-binding protein" /protein_id="YP_004124865.1" /db_xref="GI:319760928" /db_xref="GO:0003824" /db_xref="GO:0005524" /db_xref="GO:0016874" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR001882" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011764" /db_xref="GeneID:10102215" /translation="MTPCKQIRPFHTVLVANRGEIAIRIMRTARRLGYGTVAVYSEAD RDGPHVHAADRAVCIGGAAPRDSYLNIPALIDAARRAGADAVHPGYGFLAENADFADA VDAAGLVFIGPAGAAIRAMGNKAQAKRLVLAAGMPCIPGYQGADQGDAALLAAAADVG FPVMVKAAAGGGGRGMRLVPDAGALPQALASARSEAEVAFGSAELILERAVLAPRHVE IQVLADSHGHVIHLGERDCSVQRRHQKVIEEAPSPAVDAALRARMGEAAINAARAIGY IGAGTMEFLLDRDGRFYFMEMNTRLQVEHAVTEAITGLDLVEWQLRVAAGEPLALAQD DVRLDGHAIEVRLTAEDVPAGFLPQTGPVLRWRPPPQEGGVRVDHGLVEGGAVSPHYD SMVAKLVAHGRTRDEARRKLLRAVGQCVLLGLPSNQGFLADCLADPAFADGGAVHTGF VQERFGERLSERPQPPLRTLALAAFAALAGAMPHQEDGRIRPAVLGGQAARVGLAQGD ARWDAQLAAGGEGWQLAVQGGSFALRDAAWEDGARATLRVECDGITERIVVAPQGDAL HCFHAGRAWSFERVSERKRRGAEGGSGAVTAPLTGRIVDVAVRAGDAVQAGQRLLVLE AMKMEHTLTAPLAGVVAEVCAQAGGQSAKGALLLRIEEAA" misc_feature 210629..212587 /locus_tag="Alide_0192" /note="Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]; Region: COG4770" /db_xref="CDD:34383" misc_feature 210629..210952 /locus_tag="Alide_0192" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature 210971..211594 /locus_tag="Alide_0192" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 211631..211954 /locus_tag="Alide_0192" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" misc_feature 212381..212581 /locus_tag="Alide_0192" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature order(212450..212452,212477..212485,212504..212506) /locus_tag="Alide_0192" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature 212480..212482 /locus_tag="Alide_0192" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene 212593..214407 /locus_tag="Alide_0193" /db_xref="GeneID:10102216" CDS 212593..214407 /locus_tag="Alide_0193" /inference="protein motif:PFAM:PF07287" /note="PFAM: protein of unknown function DUF1446; KEGG: reu:Reut_B4459 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124866.1" /db_xref="GI:319760929" /db_xref="InterPro:IPR010839" /db_xref="GeneID:10102216" /translation="MKTKTVRIGGASGFWGDSAIATPQLLQVPGLQYLVYDYLAETTM SILARARAKDAALGYATDFVHAAMAPNLRAICERGVRVVANAGGLNPEACRDALAAVA AAQGLAPRIAVVTGDDLMPQFEQLRAAGLRDLHTGEAPPAALYSANAYVGARGIAQAL ALGADIVITGRCVDSAVVVGVLAHEFGWGWDDWDRIAAGTLAGHVIECGAQATGGLFT DWQQVPGWADMGYPVIDCAADGSFVLSKPEGTGGLIHPGAVAEQVLYEVGDPAHYLMP DVTCDFRQVHVEALDAGHVRVAGARGRPPTGSYKANGTWRDGYQLQLMMAIRGIDAPA KARKTADALLARTRALMREQGFADYTETCVELLGCEALYGPNARALPTREVVLRIGAR HADPKALAFLQRECASAGTSMGPGTRSSFAGRADVQPVIKVFSFLVPKDQVALQVVLG ERVEPVALPAAAPAVAAAPLPAPPAAAPVVHDGIDVPLVALAWARSGDKGDDENIGVI ARRPEFLPLLRAQLTPERVKAWFAHLVQGEVERFEVPGLQALNFVLHQALAGGGVASL RSDPLGKSFAQMLLDWPVRVPRRWADDGLLAPHHLLAD" misc_feature 212614..213696 /locus_tag="Alide_0193" /note="Protein of unknown function (DUF1446); Region: DUF1446; pfam07287" /db_xref="CDD:191720" gene 214431..215411 /locus_tag="Alide_0194" /db_xref="GeneID:10102217" CDS 214431..215411 /locus_tag="Alide_0194" /inference="similar to AA sequence:KEGG:Reut_B4458" /note="KEGG: reu:Reut_B4458 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124867.1" /db_xref="GI:319760930" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102217" /translation="MQSMIRRNLLAIGLGALAFAATPAWAQDNYPSKPIRVVVPYTPG GVSDTVTRLVMQKLSDRLKTPVIVDNQGGANGQIGSAMVARSAPDGYTLLVVVAGHAI NPSLYAKMTYAPLTDLRGVSEFGAIPLLMVSSAALPPKDLKEFVAWAKANPTQATFAS SGTGSGAQLSAELFAQTAGVAMTHIPYKGMAPALPDLFSGQVAMAFDSVQTMMPQVRS GKLRALAMTSARRWPAAPEVPTMAEQGYPSLTGGSWIGLLAPAKVPGDIVRKLSSEMQ KVIDAPDVHAKLIEYGIDPVGGTPEQFDAFIQSEARRWADVVKKANIRLE" sig_peptide 214431..214511 /locus_tag="Alide_0194" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 27" misc_feature 214494..215402 /locus_tag="Alide_0194" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 214578..215399 /locus_tag="Alide_0194" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 215419..216639 /locus_tag="Alide_0195" /db_xref="GeneID:10102218" CDS 215419..216639 /locus_tag="Alide_0195" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_2206 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004124868.1" /db_xref="GI:319760931" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102218" /translation="MASILEDVKVLDLTRVIAGPLCTQILADMGATVYKIEKPGEGDD TRRMGPFLPDAATGADSNDSALYLAYNRGKRSVTLDISTPEGAALARQLASRCDVVVE NYKAGSLAKYGLDEASIRALRPDIVYCSVTGFGQDGPYAARPAYDFILQGLAGVMSTC GHPDGAPGAGAMRTAIPITDVVTGLYATIGILGALHHRRETGQGQHVDAAMLDASVAL NGHLALGYLMTGKVPARVGNTNPIASPSEVFDCADGQLIVAVGNNGQFQALCGVLGCP QWAQDARFATNARRVAHRAELRDLLAPLLCGRARAELLAAFEQAGVPSGPINDMAQVF EDPQTRHRELAFTLPHGRGAEVPSLRNPIRYSQTPMRYRAAPMLGQDSEEVLAQVLGL GPDHLAYLRKRAII" misc_feature 215419..216636 /locus_tag="Alide_0195" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(216685..217602) /locus_tag="Alide_0196" /db_xref="GeneID:10102219" CDS complement(216685..217602) /locus_tag="Alide_0196" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0150 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124869.1" /db_xref="GI:319760932" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102219" /translation="MAMHFDLVDLRLMVHIADANSMTRGAELSFISLPAASTRIKNLE ESIGTKLLYRTSQGVTLTPPGQAFVTHARMVLGQIEHLRGDMQEYVRGIKGHVRVFAN TTSLGEFLPPVLRHFLRRNPDVNIDLRERLSHDIVRAVTEGQTDIGIVAGLVRTENLE TLPYRRDRLVLVVPRGHPLDGQMQIDFSDTLELDYVGLHESSAIHAFLRQASDQLHRP IKQRIQVGNFETACRMIEAGVGVGVLPESAASRHAHAMDIAIVPLSDAWSVREMQICV RSLEALPSFAQELVELLVADAQGRLQLDR" misc_feature complement(216697..217590) /locus_tag="Alide_0196" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(217405..217584) /locus_tag="Alide_0196" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(216724..217317) /locus_tag="Alide_0196" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(216892..216897,216901..216906, 216922..216939,217213..217233,217237..217239, 217249..217251,217258..217263,217267..217272)) /locus_tag="Alide_0196" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 217712..218989 /locus_tag="Alide_0197" /db_xref="GeneID:10102220" CDS 217712..218989 /locus_tag="Alide_0197" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dia:Dtpsy_0151 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004124870.1" /db_xref="GI:319760933" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102220" /translation="MTAADTSSSAATGALSHLRVLDLSRVLAGPWCTQNLADMGADVI KIEKPGDGDDTRHWGPPFFPDAEGKPTSHACYFAACNRNKRSVTVDMATPEGQQLIRE LAMQSDVVVENFKTGGLKRYGLDYASLSALNPRLIYCSVTGFGHTGPYAPRAGYDLLI QAMSGLMSITGHADGEPGGGPMRVGVAVIDLFTGMYATTAILGALEARHRTGRGQHID MALLDVAMAILANQGAGFLNAGNVPKRQGNTHPSVVPYQDFPTQDGNMLLAIGNDGQF ARFCEVAGVDWASDERFTQNAGRVIHRDTLIPMMAALTRTRSTAEWVRLLEDKAVPCG PINHIGQAFDDEQVRARSLRIVQERYPGAQPPAGETVNRVVTTASPLRLSDTPVTLRH APPALGQHTDEVLRERLGLDAARLQELRAKGVL" misc_feature 217754..218986 /locus_tag="Alide_0197" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(219041..219940) /locus_tag="Alide_0198" /db_xref="GeneID:10102221" CDS complement(219041..219940) /locus_tag="Alide_0198" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_0218 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124871.1" /db_xref="GI:319760934" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102221" /translation="MQFELKDLRLFLLVAQRGSLSRAAEQLHLSLAATSARVKALEER VGMPLLIREARGVRLSPPGEAFLFHARAILQQARQLQAELQEYGAGLRGHLRVFANTT AVTDFMPDILAAYLTAHPHISVDLEERPNARIAEDIREGRADLGIVAGEVDTHGLQSL HFSTDRLVLVTPPTPAWRAIQEIPFAQVLHENFVGMHRTSTLQTFLDGMGQQLGHTLK LRIQLASFDAMCRMVAAGVGIAVVPESGAMRYAQGAHVHQVQLMDSWAVRPRYMLVRT LQGLPAHAQALMAAVQAHHAARA" misc_feature complement(219098..219934) /locus_tag="Alide_0198" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(219749..219928) /locus_tag="Alide_0198" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(219098..219661) /locus_tag="Alide_0198" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(219236..219241,219245..219250, 219266..219283,219557..219577,219581..219583, 219593..219595,219602..219607,219611..219616)) /locus_tag="Alide_0198" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 220078..221091 /locus_tag="Alide_0199" /db_xref="GeneID:10102222" CDS 220078..221091 /locus_tag="Alide_0199" /inference="similar to AA sequence:KEGG:CtCNB1_0219" /note="KEGG: ctt:CtCNB1_0219 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="twin-arginine translocation pathway signal" /protein_id="YP_004124872.1" /db_xref="GI:319760935" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102222" /translation="MRRADFAIITRRALCAGAVLGWALTAAPGACAQGAYPSRPIVMV VPQAAGGTNDIVGRVVAQKLAEKLGGSAVVENKPGAGGNIGTQAVARAPKDGYTLLMT ISSSQAINPALYKAPGFDPVADFQPISLIGAVPNVLLAHPSFPAKTVPELLALAKSQP RTLQYASAGNGTLNHLLGEMLNQMAGIELQHVPYKGVAPALNDVLGGQLPLLFGSLPS TLAHIKAGRLRALAVSSPQRSPVLPDVPALAEFVPGYSGTLWIGLFAPAGVPNEALAR LQDGMRQAMADKELRDKLEAQGVELAGTANKPVTPNEFAALLKQDIAKWAQIVKTSGA TIN" sig_peptide 220078..220176 /locus_tag="Alide_0199" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.960 at residue 33" misc_feature 220141..221076 /locus_tag="Alide_0199" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 220243..221079 /locus_tag="Alide_0199" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 221223..222413 /locus_tag="Alide_0200" /db_xref="GeneID:10102223" CDS 221223..222413 /locus_tag="Alide_0200" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004124873.1" /db_xref="GI:319760936" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102223" /translation="MPRPLDGITVVSLEHAVAAPFCTRQLADLGARVIKVERPGSGDF ARGYDQRVRGQSSHFTWINRSKESLALDVKHPQAKAALMQLLKTADVLVQNLAPGAAA RMGLSHEALKEHNPRLIVCDISGYGADGPYRDKKAYDLLIQSEAGFLSVTGTPETPSK SGISVADIAAGMYAYSNILSALLLRARTGEGSHIDVSMLEAMGEWMGYPMYYAYQDAP PPPRTGASHASIYPYGPFTAGDGGTVMLGLQNEREWKTFCDAVLQRPEVATDARFCSN AQRNQHRSELQALILEVFAALTAAQVVERLDAAAIANARVNDMAGLWAHPQLKARQRW RSVGTPAGEVPALLPPGVNSAFDYRMDAVPAVGQHTAAILAALGWTDGQIDEVITPSP SGEG" misc_feature 221223..222386 /locus_tag="Alide_0200" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(222438..223730) /locus_tag="Alide_0201" /db_xref="GeneID:10102224" CDS complement(222438..223730) /locus_tag="Alide_0201" /inference="protein motif:PFAM:PF00208" /note="PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: dia:Dtpsy_0153 Glu/Leu/Phe/Val dehydrogenase" /codon_start=1 /transl_table=11 /product="glu/leu/phe/val dehydrogenase" /protein_id="YP_004124874.1" /db_xref="GI:319760937" /db_xref="GO:0016491" /db_xref="InterPro:IPR006095" /db_xref="InterPro:IPR006096" /db_xref="InterPro:IPR006097" /db_xref="InterPro:IPR014362" /db_xref="GeneID:10102224" /translation="MTSPSGTHPLPSYLDPNHLGPWGVYLQQVDRVTPYLGNLARWVE TLKRPKRALIVDVPIELDNGTIAHFEGYRVQHNVSRGPGKGGVRFHQDVTLSEVMALS AWMSIKNAAVNVPYGGAKGGIRVDPKTLSRGELERLTRRYTSEIGIIIGPSKDIPAPD VNTNAQVMAWMMDTYSMNVGTTATGVVTGKPVDLGGSLGRVEATGRGVFTVGVEAARL TGMPIEGARVAVQGFGNVGGTAGRLFSEAGAKVVAVQDHTGTIHNDKGLDVPALLAHV QQTGGVAGFAGAEPMADDAFWGVACDILIPAALESQITKDNAGRIQARMVIEGANGPT TPEADDILHDKGVLVLPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINARLVRIMKEA FAGVWNVAQENKVSLRTATFIVACKRILHAREMRGLYP" misc_feature complement(222444..223676) /locus_tag="Alide_0201" /note="Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Region: GdhA; COG0334" /db_xref="CDD:30682" misc_feature complement(223200..223586) /locus_tag="Alide_0201" /note="Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Region: ELFV_dehydrog_N; pfam02812" /db_xref="CDD:190436" misc_feature complement(222474..223148) /locus_tag="Alide_0201" /note="NAD(P) binding domain of glutamate dehydrogenase, subgroup 1; Region: NAD_bind_1_Glu_DH; cd01076" /db_xref="CDD:133445" misc_feature complement(order(222738..222746,222804..222809, 222960..222965,223023..223031)) /locus_tag="Alide_0201" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133445" gene 223917..224366 /locus_tag="Alide_0202" /db_xref="GeneID:10102225" CDS 223917..224366 /locus_tag="Alide_0202" /inference="protein motif:PFAM:PF05232" /note="PFAM: transmembrane pair domain-containing protein; KEGG: dia:Dtpsy_0156 transmembrane pair domain protein" /codon_start=1 /transl_table=11 /product="transmembrane pair domain-containing protein" /protein_id="YP_004124875.1" /db_xref="GI:319760938" /db_xref="InterPro:IPR007896" /db_xref="GeneID:10102225" /translation="MNATRTARGLQGPWRRLVFVSLYELIAILASSLLFMAIGQGAGA SGAMAVVASTLAIVWNVTFNHLFEKWEARQSVKGRSAMRRVVHAMGFEGGLALALIPL MAWWFGVSLWEATLMEAGLLLFFLVYTYLFNWAFDRIFGLPASAQPA" sig_peptide 223917..224066 /locus_tag="Alide_0202" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.858) with cleavage site probability 0.648 at residue 50" misc_feature 223944..224363 /locus_tag="Alide_0202" /note="Predicted membrane protein [Function unknown]; Region: COG4125" /db_xref="CDD:33882" misc_feature 223947..224147 /locus_tag="Alide_0202" /note="Bacterial Transmembrane Pair family; Region: BTP; pfam05232" /db_xref="CDD:191238" misc_feature 224151..224354 /locus_tag="Alide_0202" /note="Bacterial Transmembrane Pair family; Region: BTP; pfam05232" /db_xref="CDD:191238" gene 224413..225349 /locus_tag="Alide_0203" /pseudo /db_xref="GeneID:10102226" gene 225477..228212 /locus_tag="Alide_0204" /db_xref="GeneID:10102227" CDS 225477..228212 /locus_tag="Alide_0204" /EC_number="2.1.1.13" /inference="protein motif:TFAM:TIGR02082" /note="TIGRFAM: methionine synthase; KEGG: dac:Daci_0232 methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region" /codon_start=1 /transl_table=11 /product="methionine synthase" /protein_id="YP_004124876.1" /db_xref="GI:319760939" /db_xref="GO:0008270" /db_xref="GO:0008705" /db_xref="GO:0031419" /db_xref="InterPro:IPR000489" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR004223" /db_xref="InterPro:IPR006158" /db_xref="InterPro:IPR011822" /db_xref="GeneID:10102227" /translation="MSAVTPPPMKLSGLEPVFIGEGSLFVNVGERTNVTGSKAFARMI LGEQYEQALSVARQQVENGAQVIDVNMDEAMLDSKAAMVRFLNLIASEPDIAKVPVMV DSSKWEVIEAGLRCLQGKGIVNSISMKEGVEEFKRQAKLIKRYGAAAVVMAFDEQGQA DTFARKTEICQRAYRILVDEVGFAPEDIIFDPNIFAIATGIEEHANYAVDFIEATRWI KQHLPGAKVSGGVSNVSFSFRGNDPVREAIHTVFLYHAIKAGMDMGIVNAGMVGVYDD LDPELRARVEDVVLNRRPDAAERLLEIAEAAKGAAKDDSKKLEWRGTPDNPRPVGERL AHALVHGITDFIVADTEEAYQQIVVQGGGRPLHVIEGPLMDGMNIVGDLFGAGKMFLP QVVKSARVMKQAVAHLIPYIEEEKRQQEAAGLDVSSKGKIVVATVKGDVHDIGKNIVT VVLQCNNFEVINMGVMVPCHEILARAKAEGADIVGLSGLITPSLEEMQYVAGEMHKDD YFRIKKIPLLIGGATCSRVHTAVKIAPQYEGPVVYVPDASRSVSVAQSLLGEGKDAYL AEVQADYDHVRELHAKKKKVPLWPIEKARANAARLDYVPVVPRALGRRVFRNFDLAEI AKYLDWGPFFQTWDLAGAFPAILDDDVVGEEARKVYADGQAMLKKIIEGRWLQANGVI GLFPANRVGDDIEFYTDETRTQVLMTWYGLRQQTEKQVDAEGRLRPSRSLADFVAPKE SGIADYAGMFAVTAGIGAEKKEKEFLDALDDYSNILFKGLADRLAEAFAECLHERVRK DLWGYGADESLSNEDLIKEKYQGIRPAPGYPACPDHTAKIALFDTLQAREIGMDLTES MAMFPASSVSGFYLAHPQATYFVVGQIGDDQVQDMAARRGMDVEELRRRLAPNLG" misc_feature 225486..228116 /locus_tag="Alide_0204" /note="Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]; Region: MetH; COG1410" /db_xref="CDD:31600" misc_feature 225549..226319 /locus_tag="Alide_0204" /note="MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent...; Region: MeTr; cd00740" /db_xref="CDD:29546" misc_feature order(225573..225575,225783..225785,225846..225848, 225852..225854,225930..225932,226047..226049, 226164..226166,226176..226178,226269..226271, 226275..226277) /locus_tag="Alide_0204" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29546" misc_feature 226464..227150 /locus_tag="Alide_0204" /note="B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy); Region: methionine_synthase_B12_BD; cd02069" /db_xref="CDD:30207" misc_feature order(226584..226586,226596..226598,226647..226649, 226656..226658,226791..226811,226818..226820, 226929..226937,226941..226949,227040..227042, 227106..227108,227115..227117,227124..227126) /locus_tag="Alide_0204" /note="B12 binding site [chemical binding]; other site" /db_xref="CDD:30207" misc_feature 226800..226802 /locus_tag="Alide_0204" /note="cobalt ligand [ion binding]; other site" /db_xref="CDD:30207" misc_feature 227706..228116 /locus_tag="Alide_0204" /note="Vitamin B12 dependent methionine synthase, activation domain; Region: Met_synt_B12; pfam02965" /db_xref="CDD:111813" gene 228371..231460 /locus_tag="Alide_0205" /db_xref="GeneID:10102228" CDS 228371..231460 /locus_tag="Alide_0205" /inference="protein motif:TFAM:TIGR01865" /note="TIGRFAM: CRISPR-associated protein, Csn1 family; KEGG: vei:Veis_1230 CRISPR-associated endonuclease Csn1 family protein" /codon_start=1 /transl_table=11 /product="crispr-associated protein, csn1 family" /protein_id="YP_004124877.1" /db_xref="GI:319760940" /db_xref="InterPro:IPR010145" /db_xref="GeneID:10102228" /translation="MRSLRYRLALDLGSTSLGWALFRLDACNRPTAVIKAGVRIFSDG RNPKDGSSLAVTRRAARAMRRRRDRLLKRKTRMQAKLVEHGFFPADAGKRKALEQLNP YALRAKGLQEALLPGEFARALFHINQRRGFKSNRKTDKKDNDSGVLKKAIGQLRQQMA EQGSRTVGEYLWTRLQQGQGVRARYREKPYTTEEGKKRIDKSYDLYIDRAMIEQEFDA LWAAQAAFNPTLFHEAARADLKDTLLHQRPLRPVKPGRCTLLPEEERAPLALPSTQRF RIHQEVNHLRLLDENLREVALTLAQRDAVVTALETKAKLSFEQIRKLLKLSGSVQFNL EDAKRTELKGNATSAALARKELFGAAWSGFDEALQDEIVWQLVTEEGEGALIAWLQTH TGVDEARAQAIVDVSLPEGYGNLSRKALARIVPALRAAVITYDKAVQAAGFDHHSQLG FEYDASEVEDLVHPETGEIRSVFKQLPYYGKALQRHVAFGSGKPEDPDEKRYGKIANP TVHIGLNQVRMVVNALIRRYGRPTEVVIELARDLKQSREQKVEAQRRQADNQRRNARI RRSIAEVLGIGEERVRGSDIQKWICWEELSFDAADRRCPYSGVQISAAMLLSDEVEVE HILPFSKTLDDSLNNRTVAMRQANRIKRNRTPWDARAEFEAQGWSYEDILQRAERMPL RKRYRFAPDGYERWLGDDKDFLARALNDTRYLSRVAAEYLRLVCPGTRVIPGQLTALL RGKFGLNDVLGLDGEKNRNDHRHHAVDACVIGVTDQGLMQRFATASAQARGDGLTRLV DGMPMPWPTYRDHVERAVRHIWVSHRPDHGFEGAMMEETSYGIRKDGSIKQRRKADGS AGREISNLIRIHEATQPLRHGVSADGQPLAYKGYVGGSNYCIEITVNDKGKWEGEVIS TFRAYGVVRAGGMGRLRNPHEGQNGRKLIMRLVIGDSVRLEVDGAERTMRIVKISGSN GQIFMAPIHEANVDARNTDKQDAFTYTSKYAGSLQKAKTRRVTISPIGEVRDPGFKG" misc_feature 228386..230716 /locus_tag="Alide_0205" /note="HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins...; Region: HNHc; cl00083" /db_xref="CDD:193649" misc_feature 228386..230716 /locus_tag="Alide_0205" /note="CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI; Region: cas_Csn1; TIGR01865" /db_xref="CDD:162567" gene 231466..232395 /locus_tag="Alide_0206" /db_xref="GeneID:10102229" CDS 231466..232395 /locus_tag="Alide_0206" /inference="protein motif:TFAM:TIGR03639" /note="KEGG: vei:Veis_1231 CRISPR-associated Cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48" /codon_start=1 /transl_table=11 /product="crispr-associated protein cas1" /protein_id="YP_004124878.1" /db_xref="GI:319760941" /db_xref="InterPro:IPR002729" /db_xref="InterPro:IPR019855" /db_xref="GeneID:10102229" /translation="MIGRIVEIADDRRHLFVNRGFLVVRDTEGERKELGQVPLDDIAA VIANAHGLTYTNNLLVALAERGAPFVLCGPNHNAMGMLLPIDGHHVQAKRIEAQIAAS LPVHKRLWAAVVKSKLEQQAAALEAAAAPTAPLLALVSKVKSGDPENIEGQGARRYWG LLFGNTFRRDQNGDGVNALLNYGYTILRSATARAVVAAGLHPSIGLHHSNDSNAMRLV DDLMEPFRPVVDLKVWQLLAQGEAHVTPETKRALVRVLYDDMQTSVGVTPVMVCMQKL AISLAQVYLGERTKLDLPLQGLPLALAGSSESD" misc_feature 231475..232305 /locus_tag="Alide_0206" /note="CRISPR/Cas system-associated protein Cas1; Region: Cas1_I-II-III; cl00656" /db_xref="CDD:193901" gene 232438..232743 /locus_tag="Alide_0207" /db_xref="GeneID:10102230" CDS 232438..232743 /locus_tag="Alide_0207" /inference="protein motif:TFAM:TIGR01573" /note="KEGG: vei:Veis_1232 CRISPR-associated Cas2 family protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2" /codon_start=1 /transl_table=11 /product="crispr-associated protein cas2" /protein_id="YP_004124879.1" /db_xref="GI:319760942" /db_xref="InterPro:IPR019199" /db_xref="InterPro:IPR021127" /db_xref="GeneID:10102230" /translation="MWMVVMFDLPVVEKSERRAATGFRNALLDLGFEMSQFSVYMRFC TSQTQVDTLCRNVETALPPGGKVHIFQFTDKQYERAITFHGQRRQPGQKAPDQFDLF" misc_feature 232438..232692 /locus_tag="Alide_0207" /note="CRISPR/Cas system-associated protein Cas2; Region: Cas2_I_II_III; cd09638" /db_xref="CDD:187769" gene complement(233453..233696) /locus_tag="Alide_0208" /pseudo /db_xref="GeneID:10102231" gene complement(233693..234955) /locus_tag="Alide_0209" /db_xref="GeneID:10102232" CDS complement(233693..234955) /locus_tag="Alide_0209" /inference="protein motif:PFAM:PF03743" /note="PFAM: conjugation TrbI family protein; KEGG: ajs:Ajs_2902 conjugation TrbI family protein" /codon_start=1 /transl_table=11 /product="conjugation trbi family protein" /protein_id="YP_004124880.1" /db_xref="GI:319760943" /db_xref="InterPro:IPR005498" /db_xref="GeneID:10102232" /translation="MSQDDSPDLAPQAGKVVPEAVALRAQPRPVTRLNRRTLVMLTGG LSVAVLGATIWSLQPHRRAGEQTELYNVDRVSKSEGLDGLPSDYSKLPKVPELGPPLP GDLGPAIVKSQQPVAPTYAPPGHDPEDARRKEAEAAAASSVFFRSGTPGKTAAPATAQ VAAAGQASALAGFDPLAAGPASTAAQPADPTAVQNRQDQKEAFLKGGSTETRNSGNLK MPSSPYQVMAGTVIAGALVTGIKSDLPGDVIATVTEPVYDTATGKFLLIPQGSRILGK YNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLVGTDPAGYSGLEDGVDYHWSRIVAGA ALTTMLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERP GLPVRIIANRDLVLRPYQPMFFQRGAIR" misc_feature complement(233738..234286) /locus_tag="Alide_0209" /note="Bacterial conjugation TrbI-like protein; Region: TrbI; cl04242" /db_xref="CDD:194809" gene complement(234957..235937) /locus_tag="Alide_0210" /db_xref="GeneID:10102233" CDS complement(234957..235937) /locus_tag="Alide_0210" /inference="protein motif:TFAM:TIGR02775" /note="KEGG: ajs:Ajs_2903 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX" /codon_start=1 /transl_table=11 /product="p-type conjugative transfer protein trbg" /protein_id="YP_004124881.1" /db_xref="GI:319760944" /db_xref="InterPro:IPR010258" /db_xref="InterPro:IPR014142" /db_xref="GeneID:10102233" /translation="MNDLFRKSVLPVILLALSACATQGKPPPSISLDEPVQAQPLPEP PAPVEVVAMPQVLPMPAQMKPVPDAKPAAEPADETVRVSRANAEARIAPTREGYVNAI QVWPFTDGALYQVYAAVGRVTVIALQPGEELVTVAAGDTVRWIVGDTSSGSGDALRVN VMVKPIRSGLKTNLVITTSRRTYLIELTSTEKTWMASVSWEYPKDKMLALQRQAQAAS AAAPVDSGLSLEKIRFRYAVSGSNPPWKPLRAFDDGEKVYIQFPPGIAQGELPPLFVI GAQGDGQLVNYRFRSPYYIVDRLFGAAELRLGGDKGDVVRIERTDGTRRN" sig_peptide complement(235863..235937) /locus_tag="Alide_0210" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.937) with cleavage site probability 0.799 at residue 25" misc_feature complement(234975..235250) /locus_tag="Alide_0210" /note="VirB9/CagX/TrbG, a component of the type IV secretion system; Region: VirB9_CagX_TrbG; cd06911" /db_xref="CDD:132874" misc_feature complement(order(234984..235004,235026..235028, 235185..235202,235218..235238)) /locus_tag="Alide_0210" /note="VirB7 interaction site; other site" /db_xref="CDD:132874" gene complement(235934..236638) /locus_tag="Alide_0211" /db_xref="GeneID:10102234" CDS complement(235934..236638) /locus_tag="Alide_0211" /inference="similar to AA sequence:KEGG:Rpic_2651" /note="KEGG: rpi:Rpic_2651 conjugal transfer protein TrbF" /codon_start=1 /transl_table=11 /product="conjugal transfer protein trbf" /protein_id="YP_004124882.1" /db_xref="GI:319760945" /db_xref="GeneID:10102234" /translation="MQFKRPQVRYADTPQPATPYQSAAQVWDERIGSTRVQAKNWRFM AFGCLTLAVLMAGGLVWRSAQSIVTPYVIEVDNAGQVRAVGEAAAPYKPSDAQVAYHL GRFIGLVRSLSIDPIVVRQNWLDAYDYTTDKGAVVLNEYARVNDPFARIGKESVTVQI TSVTRASDTSFNVRWTETRFVNGALDRTERWNAVVSIVQQTPRTEQRVRKNPLGIYVN GLSWSRELEGNEGAKP" misc_feature complement(235958..236638) /locus_tag="Alide_0211" /note="VirB8 protein; Region: VirB8; cl01500" /db_xref="CDD:194151" gene complement(236657..237991) /locus_tag="Alide_0212" /db_xref="GeneID:10102235" CDS complement(236657..237991) /locus_tag="Alide_0212" /inference="protein motif:TFAM:TIGR02783" /note="KEGG: ajs:Ajs_2905 conjugal transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein" /codon_start=1 /transl_table=11 /product="p-type conjugative transfer protein trbl" /protein_id="YP_004124883.1" /db_xref="GI:319760946" /db_xref="InterPro:IPR007688" /db_xref="InterPro:IPR014150" /db_xref="GeneID:10102235" /translation="MNDVSVIDRFLDVFSRYIDSGFGLLHGEVAFLTATLIVIDMTLA GLFWAMGHASGQGEDVISKLLRKVLYVGAFAYIIGNFNMLASAVFRSFAGLGLTASGS TLSLGNFLQPGRLAKVGIDAGAPILEQIKEMAGFPEVFIHIMPIVVLFFAWMVVIVSF FVLAVQLFVTLIEFKLTTLAGFVLVPFALWNKTAFLAEKVLGNVVSSGIKVLVLAVIV GIGSGLFSEFNIPAGSEPSIDRALVIMLASLAMLALGIFGPGIATGLVSGGPQLGAGA MAGAAIGAAGTAVAVGAAAAGVGSAVTAGARMAPAAARSMTSTASIARSAYQAGSASA GGGLKGAAAGVGNVAKTGARAAGQKVADGARSMKERMAAAFGPDDAQASSAASAGPDA AGSSPPVEQPAWAKRLHRRQQLTHAATTAAHTLRGGDGGSSSQGPSLRDSDS" misc_feature complement(<237176..237991) /locus_tag="Alide_0212" /note="TrbL/VirB6 plasmid conjugal transfer protein; Region: TrbL; cl01503" /db_xref="CDD:194152" misc_feature complement(236663..>236932) /locus_tag="Alide_0212" /note="conjugal transfer protein TrbL; Provisional; Region: PRK13875" /db_xref="CDD:184359" gene complement(238004..238729) /locus_tag="Alide_0213" /db_xref="GeneID:10102236" CDS complement(238004..238729) /locus_tag="Alide_0213" /inference="protein motif:TFAM:TIGR02780" /note="TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: ajs:Ajs_2907 conjugal transfer protein TrbJ" /codon_start=1 /transl_table=11 /product="p-type conjugative transfer protein trbj" /protein_id="YP_004124884.1" /db_xref="GI:319760947" /db_xref="InterPro:IPR014147" /db_xref="GeneID:10102236" /translation="MKRRLLAAAVAAMLCTATAHAQWVVIDPTNLIQNTLTAIQTLEQ IYNQIKQLENEAQMLRNQARNLASLPSSVVGQLRANLATTQRLIAQARGLAYDVTNLD REFQRLYPEQYAATVSGNQMYRDAQERWKNTLNGLQTTMQMQAQASQNLSDDESVLAD LVGKSQSAVGALQAMQATNQLLALQAKQSIQTQRLNITQDRAASLELARQAAAVERGR EVNRRFLGGGTPYTPQTVDFYSR" sig_peptide complement(238664..238729) /locus_tag="Alide_0213" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 at residue 22" misc_feature complement(238049..238666) /locus_tag="Alide_0213" /note="Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]; Region: COG5314; cl02193" /db_xref="CDD:186517" gene complement(238726..241161) /locus_tag="Alide_0214" /db_xref="GeneID:10102237" CDS complement(238726..241161) /locus_tag="Alide_0214" /inference="protein motif:PFAM:PF03135" /note="KEGG: ajs:Ajs_2908 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="cage, trbe, virb component of type iv transporter system, conserved region protein" /protein_id="YP_004124885.1" /db_xref="GI:319760948" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR018145" /db_xref="GeneID:10102237" /translation="MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRG PDLDSATQGELIATAARLNNALRRLGSGWALFIEAERRAAADYPHSEFPEPLSWLVDE ERRATFEDSGNHFESGYHLTLVYLPPEESRARAAGMLYENRPTEGVDWRERLTAFVAE TDRVFDLLDGVMPEIAWLDDGQTLTYLHSTISTRRYRVSVPEVPFHIDALLTDSALVG GLAPMLGDQHLRVVSVRGFPTSTWPGILDDLNRLGFGYRWSTRFLCMDKADAEKELSR LRRQWFAKRKNVIALLRETIFQQETPLVDTDASNKSADADAALQELGSDQVAFGYVTT TVTVLDADPAKADEKLRMVERVIQGRGFVTIPETLNAVEAWLSSIPGHAYANVRQPIV STLNLAHLMPVSAVWAGPEKNSHLDGPPLIVTRTEGATPFRLVTHIGDVGHTLVAGPT GMGKSVLLATLAMQFRRYRGSRIFAFDMGRSMRATILGLAGEHYDLGMDGEIAFQPLA RIDREGYRTWAAEWIEGRLRHEGVAVGPDEKVAIWSALGSLAGAPVEQRTMTGLSVLL QSNSLRQALAPYVLGGAHGKLLDADHDRLGMADVQCFEMEELMHSKAAVMAVLHYLFA RFDERFDGAPTLLILDEAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDS SIAPAIIESCASRIFLPNPQATEPQIRAIYEGFGLNSRQIEIVATGQPKRDYYYQSRL GNRLFDLDLGPAALAFAGASTPQDQRDIDAVLAASSAVTPFAAAWLRHRGLHWAADLL STFPSTHLQENPS" misc_feature complement(238729..241161) /locus_tag="Alide_0214" /note="conjugal transfer ATPase TrbE; Provisional; Region: PRK13873" /db_xref="CDD:184357" misc_feature complement(239998..>240474) /locus_tag="Alide_0214" /note="VirB family, component of type IV transporter system; Region: CagE_TrbE_VirB; pfam03135" /db_xref="CDD:111973" misc_feature complement(<239599..239835) /locus_tag="Alide_0214" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(239797..239805,239815..239820)) /locus_tag="Alide_0214" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature complement(order(239728..239733,239740..239742, 239797..239805,239815..239817)) /locus_tag="Alide_0214" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature complement(<239065..239262) /locus_tag="Alide_0214" /note="TraM recognition site of TraD and TraG; Region: TraG-D_C; cl14888" /db_xref="CDD:196849" gene complement(241171..241443) /locus_tag="Alide_0215" /db_xref="GeneID:10102238" CDS complement(241171..241443) /locus_tag="Alide_0215" /inference="similar to AA sequence:KEGG:Ajs_2909" /note="KEGG: ajs:Ajs_2909 conjugal transfer TrbD transmembrane protein" /codon_start=1 /transl_table=11 /product="conjugal transfer trbd transmembrane protein" /protein_id="YP_004124886.1" /db_xref="GI:319760949" /db_xref="InterPro:IPR016704" /db_xref="GeneID:10102238" /translation="MNGPHDGMPGFEVPLHRSLTEPILMGGAPRTVAITNGTLAAAVG LGLQLWIPGVVLWIAGHSLAVWGARVDPQFMAVFARHIKHRPLLDV" misc_feature complement(241174..241443) /locus_tag="Alide_0215" /note="Type IV secretory pathway, VirB3-like protein; Region: VirB3; cl01501" /db_xref="CDD:186439" gene complement(241440..241817) /locus_tag="Alide_0216" /db_xref="GeneID:10102239" CDS complement(241440..241817) /locus_tag="Alide_0216" /inference="protein motif:PFAM:PF04956" /note="PFAM: Conjugal transfer protein TrbC; KEGG: dac:Daci_2698 conjugal transfer protein TrbC" /codon_start=1 /transl_table=11 /product="conjugal transfer protein trbc" /protein_id="YP_004124887.1" /db_xref="GI:319760950" /db_xref="InterPro:IPR007039" /db_xref="GeneID:10102239" /translation="MTHVDAFRISANPLPRPARLHGLARPAIQGLMLAAFMLLLAGTA QAAGSSMPWEGPLQSILESIQGPVARIVAVIIIIATGLALAFGDTSGGFRKLIQIVFG LSIAFAASSFFLSFFSFSGGAVV" sig_peptide complement(241677..241817) /locus_tag="Alide_0216" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.983) with cleavage site probability 0.977 at residue 47" misc_feature complement(241518..>241688) /locus_tag="Alide_0216" /note="TrbC/VIRB2 family; Region: TrbC; cl01583" /db_xref="CDD:194170" gene complement(241814..242848) /locus_tag="Alide_0217" /db_xref="GeneID:10102240" CDS complement(241814..242848) /locus_tag="Alide_0217" /inference="protein motif:TFAM:TIGR02782" /note="KEGG: ajs:Ajs_2911 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E" /codon_start=1 /transl_table=11 /product="p-type conjugative transfer atpase trbb" /protein_id="YP_004124888.1" /db_xref="GI:319760951" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR014149" /db_xref="GeneID:10102240" /translation="MSAVPSFTAVSLDRRIQMLRTAMGPLIAAALEDPDVVEVMLNPD RTLWIDRLSSGRAPMGVELSEADGERIIRLVAAHVGAEVHRGQPLLTAELPETGERFE GILPPAAPGPAFALRKRAFGVIPLSRYIEDGMMTAAQAGLLVRAVRERQNILIAGGTS TGKTTLANALLAEIAATGDRVLVLEDTVELQCAARDHVPLRTRQGVVSMTELVRSSMR LRPDRVVVGEVRGAEALDLIKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPP RALIAEAVNVVIHIAGRGRKRRIESIARVIGFDGVGYHLADALEAPFPELLPQSDLSS PSPDHSGELP" misc_feature complement(241910..242797) /locus_tag="Alide_0217" /note="P-type conjugative transfer ATPase TrbB; Region: TrbB_P; TIGR02782" /db_xref="CDD:163017" misc_feature complement(241946..242473) /locus_tag="Alide_0217" /note="Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial...; Region: VirB11-like_ATPase; cd01130" /db_xref="CDD:29996" misc_feature complement(order(241967..241969,242354..242371, 242462..242464)) /locus_tag="Alide_0217" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29996" misc_feature complement(order(242357..242365,242375..242380)) /locus_tag="Alide_0217" /note="Walker A motif; other site" /db_xref="CDD:29996" misc_feature complement(order(242063..242065,242072..242074, 242084..242092,242120..242125,242132..242134, 242144..242146,242183..242185,242189..242197, 242246..242251,242255..242266,242285..242287, 242309..242311,242369..242374)) /locus_tag="Alide_0217" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:29996" misc_feature complement(242165..242182) /locus_tag="Alide_0217" /note="Walker B motif; other site" /db_xref="CDD:29996" gene complement(242845..243291) /locus_tag="Alide_0218" /db_xref="GeneID:10102241" CDS complement(242845..243291) /locus_tag="Alide_0218" /inference="similar to AA sequence:KEGG:Ajs_2912" /note="KEGG: ajs:Ajs_2912 CopG/DNA-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="copg/DNA-binding domain-containing protein" /protein_id="YP_004124889.1" /db_xref="GI:319760952" /db_xref="GeneID:10102241" /translation="MTQHRLNVFIQPEHGKRLDELAAKKGVSKSSIVAAALASWLSPD AADQREAAIAKRLDRLSRHAERMERDLNIQIETLALFIRYFLTVSTPVPEAHQDAARA QGKARFEQFVEQLGRHLLRGRSLVRDVVEELHPDPARMDDAQERAS" gene complement(243288..245291) /locus_tag="Alide_0219" /db_xref="GeneID:10102242" CDS complement(243288..245291) /locus_tag="Alide_0219" /inference="protein motif:PFAM:PF02534" /note="PFAM: TRAG family protein; KEGG: dac:Daci_2701 conjugal transfer coupling protein TraG" /codon_start=1 /transl_table=11 /product="trag family protein" /protein_id="YP_004124890.1" /db_xref="GI:319760953" /db_xref="InterPro:IPR003688" /db_xref="GeneID:10102242" /translation="MMQGTNVLFGQIAVVFGIVIAGVWSATQWTAAALGYQLRLGSPW FDFFGTPVYHPWRLFEWWFVFDAYAPRVFDTGGAIAGGSGLLAVVVAIGMSIWRSRQS RLVTTYGSARWANADDIRKAGLTQPTGVFLGQHDHQYLRHEGPEHILTFAPTRSGKGV GLVVPTLLSWPASAVIHDIKGENWQITAGWRSRFSHCLLFNPTDSQSAAYNPLLEVRR GVHEVRDVQNIADILVDPEGALEKRNHWEKTSHALLVGAILHVLYAGEDKTLCGVANF LSDPACPFELTLHRMMTTLHLGDRSHPVVASAAREVLNKSDNERSGVLSTAMSFLGLY RDPTVAEVTSRCDWRIADLIAAEHPVSLYLVVPPSDISRTKPLIRLILNQIGRRLTES LDGSDGIERRHKLLLMLDEFPALGRLDFFETALAFMAGYGIRSFLIAQSLNQIDKAYG QNHSILDNCHVRVTFATNDERTAKRISETLGTATELRAQRNYAGHRLAPWLGHLMVSR QETARPLLTPGEVMQLPPDEAVVMVSSVAPIKAKKLRYYADANFKRRVLPPPVLAGGQ YADAPPLRPDDWSGLAIPAVPAAPATASADGLGSTDEGGPRRQPELSETVAYDPELAA PAADLGLLDDDDDLPLPLPRQLDPAMQRTARLASLDPDDGIDL" misc_feature complement(243291..245288) /locus_tag="Alide_0219" /note="conjugal transfer coupling protein TraG; Provisional; Region: PRK13876" /db_xref="CDD:184360" misc_feature complement(243720..244853) /locus_tag="Alide_0219" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(244815..244823,244833..244838)) /locus_tag="Alide_0219" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature complement(order(244059..244064,244755..244760, 244764..244766,244815..244823,244833..244835)) /locus_tag="Alide_0219" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature complement(244062..244076) /locus_tag="Alide_0219" /note="Walker B motif; other site" /db_xref="CDD:29986" gene complement(245507..245779) /locus_tag="Alide_0220" /db_xref="GeneID:10102243" CDS complement(245507..245779) /locus_tag="Alide_0220" /inference="similar to AA sequence:KEGG:BMULJ_00894" /note="KEGG: bmj:BMULJ_00894 probable lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_004124891.1" /db_xref="GI:319760954" /db_xref="GeneID:10102243" /translation="MNLSKIIAMSSLAVLLVACGKSEPSKPAAVPSVEELAADPVRLR ELRQQCKTDRPTMGDVLCNRVAEATNRRFLGDGKVPYTPPKEPPKF" sig_peptide complement(245717..245779) /locus_tag="Alide_0220" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.945) with cleavage site probability 0.778 at residue 21" gene complement(245815..246708) /locus_tag="Alide_0221" /db_xref="GeneID:10102244" CDS complement(245815..246708) /locus_tag="Alide_0221" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sml:Smlt1302 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124892.1" /db_xref="GI:319760955" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102244" /translation="MELRHLRYFLAVAEELHFARAAERLHIEQSPLSRAIRELEEELG AQLFVRTSRSTRLTLAGKLLMENAPRVLLALDQARESVKAAANGFHGRLRVALSDGIT PSRLPALLARCREEDPEIEIRLFEVPLAQQLSGLRDDLYDAGFSMADEVGDGIIIEPA WEDELMVAMPARHELLAHRRVPLDEVLQHPLVLGDPAVCEGHAKQIDRILRKQDREPL IEQYVATFDVMMTFVSAGLALGLAGAAHIASSREPGVVGRPLAGKSPMLTTYLLRRDA EPSQALARFIERVEALGPGDA" misc_feature complement(245848..246702) /locus_tag="Alide_0221" /note="DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986" /db_xref="CDD:182183" misc_feature complement(246523..246702) /locus_tag="Alide_0221" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(245842..246435) /locus_tag="Alide_0221" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature complement(order(245947..245949,246004..246009, 246013..246018,246034..246039,246094..246099, 246199..246201,246331..246333,246337..246339, 246343..246345,246367..246369,246376..246381, 246385..246390,246397..246399,246418..246420)) /locus_tag="Alide_0221" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature complement(order(246103..246105,246124..246129, 246268..246270,246415..246417)) /locus_tag="Alide_0221" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene complement(246778..249966) /locus_tag="Alide_0222" /db_xref="GeneID:10102245" CDS complement(246778..249966) /locus_tag="Alide_0222" /inference="protein motif:TFAM:TIGR00914" /note="KEGG: ajs:Ajs_1849 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="heavy metal efflux pump, czca family" /protein_id="YP_004124893.1" /db_xref="GI:319760956" /db_xref="GO:0008324" /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR004763" /db_xref="GeneID:10102245" /translation="MFEKLIRAAIEHRWLVLLAAIGMAAVGVFSYQKLPIDAVPDITN VQVQINTQAPGYSPLETEQRVTYPIETVMAGLPNLEQTRSLSRYGLSQVTVIFKDGTD IYFARQLVNERIQEARDKLPVGITPALGPISTGLGEIYLWTVEAKDGAKKPDGMPYTA TDLREIQDWIIKPQLRNVPGVTEINSIGGYAKEYQIAPIPARLASLGVTLQDIVTALD RNNGNVGAGYIEKRGEQYLIRAPGQVKTLEDIGNVILSSAGGVPIRVRDVADVGLGRE LRTGAATDNGREVVLGTVFMLIGQNSRTVSQAVDKKMVEINRSLPEGVHAVTVYDRTV LVDKAIATVKKNLLEGAILVIVILFLFLGNIRAAIITATVIPLSMLFTFTGMVHYKVS ANLMSLGALDFGIIIDGAVVIVENCVRRLAHAQAHYGRPLTRTERFHEVFLASKESRR ALLFGQLIIMVVYLPIFALTGVEGKMFHPMAFTVVAALVGAMILSVTFIPAAVALFIG HRVSETENFLVVQAKRWYGPLLDRVMAAKAVVLAAAAVAVVLCGLIATRMGSEFVPSL NEGDFAIQALRIPGTSLSQSVAMQQRLEATLKAKFPEIDRVFARTGTAEIASDPMPPN ISDGYIMLKPVSEWPEPRKSRDELLAAIQEVVGKVPGNNYEFSQPIQLRFNELISGVR SDVAVKIFGDDMDVLNKTGEEISSMLQKIPGASEVKVEQTTGLPMLTVNIDRQKASRY GLNVADIQDAVATAIGGREAGTLFEGDRRFDILVRLPESLRNDLESMKRLPIPLPRGT GGTGSAEGRTNFIQLAEVASFELAPGPNQVSRENGKRRIVVSANVRGRDVGSFVADAE AALAQVKIPTGYWTSWGGTFENLQSATQRLQIVVPVSLLLVFLLLFAMFGNVKDGLLV FTGIPFALTGGILALWLRDIPLSISAAVGFIALSGVAVLNGLVMISYIRSLREDGTPL DEAIREGALTRLRPVLMTALVASLGFIPMAIATGTGAEVQRPLATVVIGGILSSTVLT LLVLPILYRLAHRPDEQEEDVTAEPAHEGVTA" misc_feature complement(246799..249966) /locus_tag="Alide_0222" /note="heavy metal efflux pump (cobalt-zinc-cadmium); Region: 2A0601; TIGR00914" /db_xref="CDD:129992" gene complement(249983..251575) /locus_tag="Alide_0223" /db_xref="GeneID:10102246" CDS complement(249983..251575) /locus_tag="Alide_0223" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: ajs:Ajs_1848 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein" /codon_start=1 /transl_table=11 /product="efflux transporter, rnd family, mfp subunit" /protein_id="YP_004124894.1" /db_xref="GI:319760957" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10102246" /translation="MKPETNKLNVGKKQWIAIVVIAAVGIGLGSAILGGKTGKSAEGE GHGSHVEAKAHSDGEHHGKTGADSHEDDKGHADGEHHEGSSKGPHGGKLFKEGDFGLE ALLAEDGGEPRLRIWLYEKEKALASSAAKVSATVTRLTGEKQALNFTPDKDSLLSREI VPEPHAFEINIVAQTANAPFTFSFSQEEGKVELSDAQIKAASIGIDTAGAASIKSALQ LPGEIRLNEDRTSHVVPRIAGVVESVQASLGQTVKKGQVLAVIASPAASEQRSELQTA QKRLALAQTTFEREKRLWEQKISAEQDYLQAGQALNEAQVAVANAQQKLSAVGLAPGS SGGLNRFELRAPFDGVVIEKHLSLGEAVKEDAAVFTVSDLGQVWAEINVPAKDLPLVR VGEKVSIKATAFDASAQGTITFVGALIGEQTRMAKARVVLANPQGAWRPGLFVNVEVI ASETAVPVSVASDAIQSVGDKPVVFVKVKDGFVAQPVQLGRSDGKRVEVLQGLQAGAA YAAAGSFVVKSELGKASAEHTH" misc_feature complement(250022..250831) /locus_tag="Alide_0223" /note="Membrane Fusion Protein cluster 2 (function with RND porters); Region: 8a0102; TIGR00999" /db_xref="CDD:162153" gene complement(251578..252903) /locus_tag="Alide_0224" /db_xref="GeneID:10102247" CDS complement(251578..252903) /locus_tag="Alide_0224" /inference="protein motif:PFAM:PF02321" /note="PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_1847 outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="outer membrane efflux protein" /protein_id="YP_004124895.1" /db_xref="GI:319760958" /db_xref="GO:0005215" /db_xref="InterPro:IPR003423" /db_xref="GeneID:10102247" /translation="MLKSIHNRRASAVAAGLVFVLTAGTASAQALPAVPGHSRSANGG EQIEAATPLSLQEAIALALEGNLDLTVAQREIEAVEGQVIQGRVRPNPELAYSLEDQR TPTRTQSVQINLPIELGGKRAARIAAAERGRDVAVEELNMRRVEIRAAVVSAFFEALA AQDRTMLAQDSVDLAKKATDAVAKRVTAGKVSPVEETKARVAEAGVRVELAQAQSEQR STRARLAGLLGANPPRFTQVAGSVDDLPAVPSLDDIQQRLSASSALRRAQLEVERRRS LADVERSKQTPDVTVSLGVKRPNELARNQLMLGVSVPLPLFDRNQGNLLEALKREDKA RDELQALNLRLSTEVLQARERLTLVRGEIDVLQREVLPGAKSAYDAATVGFGYGKFNF LEVLDAQRTYFAAQSQYLKALAEAHRAAADMDRVIGASEPTITPPANKE" sig_peptide complement(252817..252903) /locus_tag="Alide_0224" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.927 at residue 29" misc_feature complement(251671..252873) /locus_tag="Alide_0224" /note="Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538" /db_xref="CDD:31727" misc_feature complement(252217..252741) /locus_tag="Alide_0224" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(251671..252150) /locus_tag="Alide_0224" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(253070..253423) /locus_tag="Alide_0225" /db_xref="GeneID:10102248" CDS complement(253070..253423) /locus_tag="Alide_0225" /inference="similar to AA sequence:KEGG:Daro_2621" /note="manually curated; KEGG: dar:Daro_2621 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124896.1" /db_xref="GI:319760959" /db_xref="InterPro:IPR020487" /db_xref="GeneID:10102248" /translation="MRKWLAIVLLVFLPLQFSWAAVASYCQHETGAAAKHFGHHAHQH KAADGKDASPDPAKTLGGDPDCASCHAGCFSVLSGDVKLASSISPSLDTAYHPESLAA PPPERLERPRWRALA" sig_peptide complement(253361..253423) /locus_tag="Alide_0225" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 at residue 21" gene complement(253630..253965) /locus_tag="Alide_0226" /db_xref="GeneID:10102249" CDS complement(253630..253965) /locus_tag="Alide_0226" /inference="similar to AA sequence:KEGG:Ajs_2700" /note="KEGG: ajs:Ajs_2700 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124897.1" /db_xref="GI:319760960" /db_xref="GeneID:10102249" /translation="MKLTHLVAMKAIILATALPMAAQADSLWHPASNEQGFTYHPDHF KSTKTRAQVLAEVEAARKDGTLTLMQGGLPVPIKSSAAPKTRQQVVDEMRSESPEARR ARLEMYSGG" sig_peptide complement(253891..253965) /locus_tag="Alide_0226" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 25" gene 254110..254796 /locus_tag="Alide_0227" /db_xref="GeneID:10102250" CDS 254110..254796 /locus_tag="Alide_0227" /inference="protein motif:TFAM:TIGR01387" /note="TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: dia:Dtpsy_2215 two component heavy metal response transcriptional regulator, winged helix family; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="heavy metal response regulator" /protein_id="YP_004124898.1" /db_xref="GI:319760961" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="InterPro:IPR006291" /db_xref="GeneID:10102250" /translation="MKLLIVEDEAKLADYLRKGLSEEGYVIDVAVNGIDGLHMASDGH YDLIVLDTMLPGIDGFGLLAALRQNKQTPVIMLTARHRIEDRVRGLKTGADDYLVKPF AFSELVARIEVLLRRAAGTAPAPDALVLCLGDLQVDLARRRATRAGQRIDLSAKEFQL LTLLLRRKGEVLSRTEIAEQVWDVNFDHGTNVIDVAVRRLRSKLDLPFERPLLHTVRG MGYVLEDRQS" misc_feature 254116..254778 /locus_tag="Alide_0227" /note="heavy metal response regulator; Region: cztR_silR_copR; TIGR01387" /db_xref="CDD:130454" misc_feature 254119..254454 /locus_tag="Alide_0227" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(254128..254133,254260..254262,254284..254286, 254341..254343,254398..254400,254407..254412) /locus_tag="Alide_0227" /note="active site" /db_xref="CDD:29071" misc_feature 254260..254262 /locus_tag="Alide_0227" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(254269..254274,254278..254286) /locus_tag="Alide_0227" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 254407..254415 /locus_tag="Alide_0227" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 254497..254778 /locus_tag="Alide_0227" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(254569..254571,254626..254631,254683..254685, 254692..254694,254716..254721,254752..254754, 254767..254769) /locus_tag="Alide_0227" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 254925..256115 /locus_tag="Alide_0228" /db_xref="GeneID:10102251" CDS 254925..256115 /locus_tag="Alide_0228" /inference="protein motif:TFAM:TIGR01386" /note="TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: dia:Dtpsy_2216 heavy metal sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein" /codon_start=1 /transl_table=11 /product="heavy metal sensor kinase" /protein_id="YP_004124899.1" /db_xref="GI:319760962" /db_xref="GO:0000155" /db_xref="GO:0004673" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR006290" /db_xref="GeneID:10102251" /translation="MDTLRQQQTQVNHLIAEAAELDSGTLAHKLDDGMVGRQDMKLIL TRADGSVIYASAGIPVHHRVIDMRFEATTGIPPIQAVLSLDVSEDDRVLERLARTLVA AALAGAVVIAAGGFTLVQIGLRPVRDLSAQIQALEADTLHRLLDGSAQPDELAPLVAH VNELLKRLHKAYEQLEAFNADVAHELFTPLATLMGGTEVALRKARDADTLRDVLGSHL EDLQRMSMIVQDMLFLSQADRGAEARREHVASMAGVARTVVELHEAAIEEAGLKVRIN GDATGLADVRLLQRALSNLIGNATRHAHPHSTVVVQIDRLDGEIALRVVNEGQTISAE HLPNLFNRFYRADAARSDAARNHGLGLAIVAAIARMHGGRTMVDSSNGITSIGLMVPT PRAQ" misc_feature 254928..256097 /locus_tag="Alide_0228" /note="heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386" /db_xref="CDD:162333" misc_feature 255441..255632 /locus_tag="Alide_0228" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(255456..255458,255468..255470,255480..255482, 255489..255491,255501..255503,255510..255512, 255561..255563,255573..255575,255582..255584, 255594..255596,255603..255605,255615..255617) /locus_tag="Alide_0228" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 255474..255476 /locus_tag="Alide_0228" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 255786..256070 /locus_tag="Alide_0228" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(255804..255806,255816..255818,255825..255827, 255894..255896,255900..255902,255906..255908, 255912..255917,255996..256007,256053..256055, 256059..256061) /locus_tag="Alide_0228" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 255816..255818 /locus_tag="Alide_0228" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(255906..255908,255912..255914,255996..255998, 256002..256004) /locus_tag="Alide_0228" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(256151..256843) /locus_tag="Alide_0229" /db_xref="GeneID:10102252" CDS complement(256151..256843) /locus_tag="Alide_0229" /inference="similar to AA sequence:KEGG:Arad_2530" /note="KEGG: ara:Arad_2530 transporter" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="YP_004124900.1" /db_xref="GI:319760963" /db_xref="GeneID:10102252" /translation="MVISAWIYTLIPAAAAIIGAAVAVNVRPGPTLVSAIQHFAAGVV FAAAAGEILPDIMHRASPWATMIGGGIGVATMLLVKHLEALAKGPAGLLTVIGIDILI DGLVLGIGFAAGPKVGLLLTIALTIEVLFLGLTVATELGESVRSRARVVWITAALVLL LPIGALLGAPVALLPNPLLTGFFAFGLIALLYLVTEELLIEAHETPDRPWVTAMFFVG FLALLLLEEVIG" sig_peptide complement(256772..256843) /locus_tag="Alide_0229" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.724) with cleavage site probability 0.685 at residue 24" gene complement(256847..257137) /locus_tag="Alide_0230" /db_xref="GeneID:10102253" CDS complement(256847..257137) /locus_tag="Alide_0230" /inference="similar to AA sequence:KEGG:Sfri_3475" /note="manually curated; KEGG: sfr:Sfri_3475 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124901.1" /db_xref="GI:319760964" /db_xref="GeneID:10102253" /translation="MGILDRIFGGHGGGHGSSHGHGNSRGHGSPSSHDWGHNPAPSVS GITCPQCKAINPNGARFCGQCGTSLVPASCTKCSSVIPIGAKFCAQCGNAVT" misc_feature complement(<256850..257002) /locus_tag="Alide_0230" /note="putative protein serine/threonine phosphatase; Provisional; Region: PRK14559" /db_xref="CDD:184743" gene complement(257160..259469) /locus_tag="Alide_0231" /db_xref="GeneID:10102254" CDS complement(257160..259469) /locus_tag="Alide_0231" /inference="protein motif:TFAM:TIGR01525" /note="KEGG: vap:Vapar_3562 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="heavy metal translocating p-type atpase" /protein_id="YP_004124902.1" /db_xref="GI:319760965" /db_xref="GO:0005524" /db_xref="GO:0046872" /db_xref="GO:0046873" /db_xref="InterPro:IPR001366" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR001917" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR006404" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="InterPro:IPR018303" /db_xref="GeneID:10102254" /translation="MDCASEESEIRRALEGMAGIRGLRFNLGDRELAIAADDHALPQA LEAIRKAGFKPEPLGAKNAQRFRIANMDCASEESEIRRALDGMAGIRSLQFNLGDREL AIAADDPVLQQAVDAIRKAGFKPEPLGDTGSSAAAAAVASPTGFWTTWGKSLGALGLA VAAEGLAFAFPDSVPVKALGMALAAAAIALSGFSVYGKGLAALRQGRLNINALMTVAV TGAFLIGQWPEAAMVMALYAIAEAIEARAVDRARGAIKSLLALAPEQAEVRQDDGSWA RIGVKEVTVGATVRIRPGERLPLDGIVTLGQSAIDQSPVTGESLPVDKSPGDEVFAGT INQAAALEIRVTAPASDSTLARIIHAVEQAQSSRAPTQRFVDRFAAIYTPAVFVLAVA VALLAPWLMGLTWMQAAYKALVLLVIACPCALVISTPVTVVSGLAAGARRGILIKGGV YLEEARKIKAVALDKTGTITEGKPKLVAFEPVDAGLGQQVLEGLAKSLAARSDHPVSK AIADGVSSAAQEVDEFQAVAGRGVQGVIDGHTYVLANHRWIEERGQCSAELEARLAVH EQAGRTVTLLASSERVMAICAVADTIKPSSAQAVADLKALGVTPVMLTGDNLATAQTV GAQAGIAEVRGNLLPEDKLRAIGELQQRLGVTAMTGDGINDAPALAKADIGFAMGGAG THTAMEAADVVVMNDDLRRLPETIRLSKRTHAVLWQNIALALGIKLVFLLLAIFDDAS MWMAVFADMGASLLVVFNGLRLLRQRAGQ" misc_feature complement(259302..259469) /locus_tag="Alide_0231" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature complement(order(259452..259454,259461..259469)) /locus_tag="Alide_0231" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature complement(257166..259289) /locus_tag="Alide_0231" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature complement(259098..259277) /locus_tag="Alide_0231" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cl00207" /db_xref="CDD:193707" misc_feature complement(258108..258776) /locus_tag="Alide_0231" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature complement(257382..257729) /locus_tag="Alide_0231" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 259708..260163 /locus_tag="Alide_0232" /db_xref="GeneID:10102255" CDS 259708..260163 /locus_tag="Alide_0232" /inference="protein motif:TFAM:TIGR02047" /note="SMART: regulatory protein MerR; manually curated; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; KEGG: mpt:Mpe_A1657 transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR" /codon_start=1 /transl_table=11 /product="cd(ii)/pb(ii)-responsive transcriptional regulator" /protein_id="YP_004124903.1" /db_xref="GI:319760966" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR011791" /db_xref="InterPro:IPR015358" /db_xref="GeneID:10102255" /translation="MKIGELAKAAHTQVETIRYYEREGLLPETARTDGNYRMYAEEHV DRLSFIRHCRGLDMTLDEIRVLLRFKDAPHENCAQVNDLLDEHIDHVATRIKELKALE RQLKTLRESCRESQQASQCGILTELSSASRQVHEPATRRGHVHGAHSLK" misc_feature 259708..260088 /locus_tag="Alide_0232" /note="Cd(II)/Pb(II)-responsive transcriptional regulator; Region: CadR-PbrR; TIGR02047" /db_xref="CDD:131102" misc_feature 259708..260088 /locus_tag="Alide_0232" /note="Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators; Region: HTH_CadR-PbrR; cd04784" /db_xref="CDD:133411" misc_feature order(259711..259719,259759..259761,259810..259818) /locus_tag="Alide_0232" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133411" misc_feature order(259852..259854,259861..259863,259873..259878, 259903..259905,259936..259941,259948..259950, 259957..259959,259969..259971,259987..259989, 259999..260001,260008..260013,260032..260034, 260047..260052,260068..260070,260074..260076) /locus_tag="Alide_0232" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133411" misc_feature order(259936..259938,260041..260043,260068..260070) /locus_tag="Alide_0232" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:133411" gene complement(260164..262146) /locus_tag="Alide_0233" /db_xref="GeneID:10102256" CDS complement(260164..262146) /locus_tag="Alide_0233" /inference="similar to AA sequence:KEGG:Daci_0453" /note="KEGG: dac:Daci_0453 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124904.1" /db_xref="GI:319760967" /db_xref="GeneID:10102256" /translation="MTDRRDDDFRIRPSAPKNRGQGFVSKVLKQAGKASSGKSSVRRP GASGSGQRAGQRPGSRLGRGHTAARFAGAKLTPMSRRVAIKTLLVNQQRASPQSLAKH LRYIERDGVGRDGEPGQAYGPQTDTADLDAFKERCADDRHHFRFILSPEDGAELEDLR TYTRHLMGRMEADLGTRLEWVAVDHWNTDNPHTHIVVRGRDDTGKDLIIAGDYIADGF RHRAAELATEWLGPRTELEIQQTLRREVDQERWTNLDRTLKRELGDDGLVHVERLNES RLQRQCLLLIGRLQRLQRLGLADETQPGTWAIHADAEKTLRALGERGDIIRTMQRAMR GEPRELAVFEPGDDGRTIVGRVAAKGLADELRDRGYLVIDGVDGKAHYVALNARDELA NYPAGAVVEVKGSADVRAADKNIAALASDGLYRTDHHLAIAQGQAAPGRDPQEVVAAH VRRLEALRRTGIVERVAEGLWKVPDDLPEQGRQYDAQRLGGVAVELKSHLPIERQARV IGVTWLDQQLIGGGSGLGDLGFGGEAKQAMQQRADFLAEQGLAERRGQRVILARNLLG TLRDRELAQAAKDIAADTGLEHRPVADGQRVAGIYRRSVMLASGRYAMLDDGMGFSLV PWKPVIEQRLGQQLAATVRGGAASWEIGRRLGVSLS" misc_feature complement(260992..261930) /locus_tag="Alide_0233" /note="Relaxase/Mobilisation nuclease domain; Region: Relaxase; cl01584" /db_xref="CDD:174650" misc_feature complement(260170..261255) /locus_tag="Alide_0233" /note="Protein of unknown function (DUF3363); Region: DUF3363; pfam11843" /db_xref="CDD:152279" gene complement(262143..262598) /locus_tag="Alide_0234" /db_xref="GeneID:10102257" CDS complement(262143..262598) /locus_tag="Alide_0234" /inference="similar to AA sequence:KEGG:Smlt1309" /note="manually curated; KEGG: sml:Smlt1309 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124905.1" /db_xref="GI:319760968" /db_xref="GeneID:10102257" /translation="MMAADSLHVAVHLVVPSGVSCCWPSPCRSACSASASAPHFALPS AQPSNVQASCLERARSVAVFAFAGALAARAAAPPGRRCPERQRGAKAEGKTKGCGTCR PAKPVCTWGWRGTERLRRRAAWGAKPAPMQACPRASHDRTRQSLQGAQP" gene complement(262595..263194) /locus_tag="Alide_0235" /db_xref="GeneID:10102258" CDS complement(262595..263194) /locus_tag="Alide_0235" /inference="protein motif:PFAM:PF10502" /note="PFAM: Peptidase S26, conserved region; KEGG: dia:Dtpsy_1292 TraF peptidase. Serine peptidase. MEROPS family S26C" /codon_start=1 /transl_table=11 /product="peptidase s26, conserved region protein" /protein_id="YP_004124906.1" /db_xref="GI:319760969" /db_xref="InterPro:IPR019533" /db_xref="GeneID:10102258" /translation="MTFPSAVAGAAGIPPRPRSRLRARIVLAGLSACGLAALAWASFV QPMPRLIYNPSDSVAVGWYRVDPLGHDTGSLPRPLSVGSIVLTTLPPDAAALAAQRGY LPARVPLLKRVGAVAPQEVCITGRVVRIDGVPSAAVLPADRWGRPLPSWQQCRHLEPG ELFLLSVTNPASFDSRYFGPVSTSAVIGVAHPVWLESRP" misc_feature complement(262610..263047) /locus_tag="Alide_0235" /note="Peptidase S26; Region: Peptidase_S26; pfam10502" /db_xref="CDD:151062" misc_feature complement(262616..263038) /locus_tag="Alide_0235" /note="The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88)...; Region: Peptidase_S24_S26; cl10465" /db_xref="CDD:186999" gene complement(263191..263736) /locus_tag="Alide_0236" /db_xref="GeneID:10102259" CDS complement(263191..263736) /locus_tag="Alide_0236" /inference="similar to AA sequence:KEGG:Dtpsy_3522" /note="KEGG: dia:Dtpsy_3522 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124907.1" /db_xref="GI:319760970" /db_xref="GeneID:10102259" /translation="MTASVSSAAAPVACAATAALAAPSGQPASAPLTRVALAYIEPRF KLYLRFGEPARTLQLDRWRRCAVFLPGAMLCRIRWQANDYGTIRWQLMVMQACTPLDA AQRIPGVQPGARLLLHAEGENQVRAVLERIDAIEALGIAPNGASPAYWRTLANRLAAR LPLPEYTAERHAAWLTGRALS" sig_peptide complement(263671..263736) /locus_tag="Alide_0236" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.991 at residue 22" misc_feature complement(263197..263643) /locus_tag="Alide_0236" /note="Protein of unknown function (DUF2840); Region: DUF2840; pfam11000" /db_xref="CDD:192691" gene complement(263733..264017) /locus_tag="Alide_0237" /db_xref="GeneID:10102260" CDS complement(263733..264017) /locus_tag="Alide_0237" /inference="similar to AA sequence:KEGG:Aave_0688" /note="KEGG: aav:Aave_0688 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124908.1" /db_xref="GI:319760971" /db_xref="GeneID:10102260" /translation="MTAKPPPNGKRTAKRVSIGARPPANPHAEAWIRQGDADALGKGD LYTARLTLDITPAMRARIKVSAFTQGVTVADLLRGLLEREFPEHRRENTP" gene complement(264014..264652) /locus_tag="Alide_0238" /db_xref="GeneID:10102261" CDS complement(264014..264652) /locus_tag="Alide_0238" /inference="similar to AA sequence:KEGG:Tgr7_1879" /note="KEGG: tgr:Tgr7_1879 cobyrinic acid ac-diamide synthase" /codon_start=1 /transl_table=11 /product="cobyrinic acid ac-diamide synthase" /protein_id="YP_004124909.1" /db_xref="GI:319760972" /db_xref="GeneID:10102261" /translation="MIVALLNQKGGVGKTTLATHIAGELAMRGQHVVLLDADPQGSSL DWTQRRSQQGLPRLFSAVGLARETLHQEAPELARRADHVVIDGPPRIAALARSALLAA ERVLIPVQPSPYDLWASAEMVALIREAQVFRPALRAAFVINRRVSTTVIGREARQALA DQPLPALRAEVHQRIVFADSVAAGRLARETAPDSAAAREITALVDELLRWTP" misc_feature complement(264026..264652) /locus_tag="Alide_0238" /note="ParA-like protein; Provisional; Region: PHA02518" /db_xref="CDD:134018" misc_feature complement(264224..264649) /locus_tag="Alide_0238" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature complement(264608..264628) /locus_tag="Alide_0238" /note="P-loop; other site" /db_xref="CDD:73302" misc_feature complement(order(264395..264397,264608..264610)) /locus_tag="Alide_0238" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene complement(264906..265739) /locus_tag="Alide_0239" /db_xref="GeneID:10102262" CDS complement(264906..265739) /locus_tag="Alide_0239" /inference="protein motif:PFAM:PF10134" /note="PFAM: Replication initiator protein A; KEGG: dac:Daci_2721 replication initiator and transcription repressor protein" /codon_start=1 /transl_table=11 /product="replication initiator protein a" /protein_id="YP_004124910.1" /db_xref="GI:319760973" /db_xref="InterPro:IPR018777" /db_xref="GeneID:10102262" /translation="MSKPLQEREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTA PIDFRASNVTIRVEGTAEHGIATIWDADILIWAASQIVEARDAGLRPSRLMQVRPYEV LRFIGRGTSLRDYQRLKAALDRLQSTTVATSIRETTGRRLHRFSWINEWKELADASGT PLGLELILPDWFYAGVLDAALVLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGGWQFD FQHLYRKSGSVARYYDFAADLRALVARQALPGYLLGIEHVSGISSPLLTFRPVPQTAR G" misc_feature complement(264981..265670) /locus_tag="Alide_0239" /note="Replication initiator protein A; Region: RPA; cl02339" /db_xref="CDD:154863" gene complement(265766..266047) /locus_tag="Alide_0240" /db_xref="GeneID:10102263" CDS complement(265766..266047) /locus_tag="Alide_0240" /inference="similar to AA sequence:KEGG:Ajs_2652" /note="KEGG: ajs:Ajs_2652 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124911.1" /db_xref="GI:319760974" /db_xref="GeneID:10102263" /translation="MRPAPLRPAATVSTAAAQPQRYLTNDEAAEYLRLSPRTLEKQRV IGGGPRFRKFGRRVMYAVADLDAWAADRSFETTSDPEYAEHHSADSRAR" gene complement(266131..266904) /locus_tag="Alide_0241" /db_xref="GeneID:10102264" CDS complement(266131..266904) /locus_tag="Alide_0241" /inference="similar to AA sequence:KEGG:Ajs_2651" /note="KEGG: ajs:Ajs_2651 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124912.1" /db_xref="GI:319760975" /db_xref="GeneID:10102264" /translation="MVSPHHFAHWYPTAAYLYVLWLDTLALAWEYLRRHPDYRLDWLR RARRPDAAHRWGLRLLEDPALDARDAHPAWQPGHAAVVQLHPDADPPVDAESFAFWRI PGHKQLLHDGKRLALIAHSPGHCLRFALAPGLEDGMAVAYAVRTDATASPRYRACGTT LATPAAVALPRPAPVALLELHTLQALDATLAGASLREVGEGLFGVDAVADWYADGGLR SKVRRLVRRGDALMRGGYRRLAQLPPLEKGRFDADAKRP" misc_feature complement(266182..>266370) /locus_tag="Alide_0241" /note="Uncharacterized conserved protein (DUF2285); Region: DUF2285; cl02246" /db_xref="CDD:154817" gene complement(267233..267583) /locus_tag="Alide_0242" /db_xref="GeneID:10102265" CDS complement(267233..267583) /locus_tag="Alide_0242" /inference="similar to AA sequence:KEGG:Dtpsy_3529" /note="KEGG: dia:Dtpsy_3529 lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_004124913.1" /db_xref="GI:319760976" /db_xref="GeneID:10102265" /translation="MNAPLVTDAQRAALLANGRRVAAAEPHDPLPVVRLFTPDAHAIW LLASLDPADGDTAFGVMDVGIGMPELGHIKLSDLTSIVGPNKQPVMRDLYFQAVHPLS EYLRLAQENGSIVD" misc_feature complement(267236..267571) /locus_tag="Alide_0242" /note="Protein of unknown function (DUF2958); Region: DUF2958; pfam11171" /db_xref="CDD:151613" gene 267842..268135 /locus_tag="Alide_0243" /db_xref="GeneID:10102266" CDS 267842..268135 /locus_tag="Alide_0243" /inference="protein motif:PFAM:PF01381" /note="KEGG: dia:Dtpsy_3530 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain protein" /protein_id="YP_004124914.1" /db_xref="GI:319760977" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10102266" /translation="MQKRSIQRGRPTGATTYDAELAQAFGAAVRALRTERGIAQESLA HLAGIERSHMGKVERGEHMPTLAIIFKIAGALECSTAVLMSEAESQLAAAAQP" misc_feature 267917..268078 /locus_tag="Alide_0243" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(267929..267931,267941..267943,268016..268018) /locus_tag="Alide_0243" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(267938..267940,268013..268015) /locus_tag="Alide_0243" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(267959..267964,267995..267997,268004..268006, 268016..268021) /locus_tag="Alide_0243" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene complement(268520..268834) /locus_tag="Alide_0244" /db_xref="GeneID:10102267" CDS complement(268520..268834) /locus_tag="Alide_0244" /inference="protein motif:PFAM:PF05284" /note="PFAM: protein of unknown function DUF736; KEGG: aav:Aave_0681 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124915.1" /db_xref="GI:319760978" /db_xref="InterPro:IPR007948" /db_xref="GeneID:10102267" /translation="MANIGTFTADKDGFNGQLRTLTLNVKVKLVPNDKGNNESAPDFR LQAAGHDIGAAWKKTSEAGRPYVSVTLDDPSFPATVYARLIENEDGTHDLIWSRNKPK AA" misc_feature complement(268526..268834) /locus_tag="Alide_0244" /note="Protein of unknown function (DUF736); Region: DUF736; cl02303" /db_xref="CDD:154848" gene 269905..270819 /locus_tag="Alide_0245" /db_xref="GeneID:10102268" CDS 269905..270819 /locus_tag="Alide_0245" /inference="similar to AA sequence:KEGG:RPC_3544" /note="KEGG: rpc:RPC_3544 phage associated protein" /codon_start=1 /transl_table=11 /product="phage associated protein" /protein_id="YP_004124916.1" /db_xref="GI:319760979" /db_xref="GeneID:10102268" /translation="MTIRESGADSTWHRAKEIVEAQGNDAQFVNISQNIASKLAVAQA NRTIPGGIVVVIEGTCGNPAKSFMCVIKAEPHGGFTKRQAGGHLTLEYIKELILTPQA KLYKIGAFLRQDPAAATPQEPTTGWRAFLFDDLITQGNKLAAAQYFYESFLGLEFPSN SAFQTKQFHALTKDFIRNANVDSEKKIDLLNALTTYLKTDQAATIQVDVFSQNYLGDA ALQDAYTAYMGQKSFPNTAIHKDLSEVQSQLRLRKLTFGHDIKLTAPADQFENYVRIE SIDGDADEHGNVPKWTKITVRDHIRDQE" misc_feature 269974..270747 /locus_tag="Alide_0245" /note="37-kD nucleoid-associated bacterial protein; Region: NA37; pfam04245" /db_xref="CDD:190920" gene 270960..271802 /locus_tag="Alide_0246" /db_xref="GeneID:10102269" CDS 270960..271802 /locus_tag="Alide_0246" /inference="protein motif:PFAM:PF04607" /note="PFAM: RelA/SpoT domain protein; KEGG: rpc:RPC_3545 RelA/SpoT" /codon_start=1 /transl_table=11 /product="rela/spot domain protein" /protein_id="YP_004124917.1" /db_xref="GI:319760980" /db_xref="InterPro:IPR007685" /db_xref="GeneID:10102269" /translation="MVPRLKGDTSLIDKALYRSKPYKNPYEDITDKVGMRYVVLLTTH INTFCSIIESRECEAFWSWSKDKDYEEERLAKPLEFSYQSVHYVLRSKAELSVDGVNL PEGLACEVQIRTLLQHAHSELTHDTLYKPKTTAKPSIKRTVAKSMALIEATDEFFEQA MKDLASASEPQRQLLDYLSTTYRKGTGLEPGQERSNQLVVDAFMEFLPQETSARIEEF LTAKNYIFEKIKEQNGQRHFFNQPAVLLAYFLVEKMPAQTRENWPIDSDDLAKIFSDL GAAF" misc_feature 270969..271328 /locus_tag="Alide_0246" /note="Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399" /db_xref="CDD:143389" misc_feature order(270969..270971,270975..270977,271050..271055, 271065..271067,271158..271160,271164..271166, 271191..271193,271197..271199,271203..271205, 271215..271217,271284..271286,271290..271292, 271296..271298,271320..271325) /locus_tag="Alide_0246" /note="synthetase active site [active]" /db_xref="CDD:143389" misc_feature order(270969..270971,271158..271160,271164..271166, 271191..271193,271197..271199,271203..271205, 271215..271217,271284..271286,271290..271292, 271320..271322) /locus_tag="Alide_0246" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143389" misc_feature order(271050..271052,271284..271286) /locus_tag="Alide_0246" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143389" gene complement(271936..272145) /locus_tag="Alide_0247" /db_xref="GeneID:10102270" CDS complement(271936..272145) /locus_tag="Alide_0247" /inference="similar to AA sequence:KEGG:Daci_2732" /note="KEGG: dac:Daci_2732 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124918.1" /db_xref="GI:319760981" /db_xref="GeneID:10102270" /translation="MTRITTSRPRMAAIYAPGTVRARRWHGAGDVRGYRPPSGWSARA DLTDIHPITGRALPRAVWWLIETKE" gene complement(272208..274262) /locus_tag="Alide_0248" /db_xref="GeneID:10102271" CDS complement(272208..274262) /locus_tag="Alide_0248" /inference="protein motif:PFAM:PF02195" /note="KEGG: dia:Dtpsy_3534 ParB domain protein nuclease; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease" /codon_start=1 /transl_table=11 /product="parb domain protein nuclease" /protein_id="YP_004124919.1" /db_xref="GI:319760982" /db_xref="GO:0003677" /db_xref="InterPro:IPR003115" /db_xref="GeneID:10102271" /translation="MNAITQTEARAVNTAAAIPLEAADPTKNLILVPLSRLVLRPTGR NVRKTPRMSIPELAASIRRVGLLQNLIVIASADGEHYEVVAGGRRLAALKLLAKKHRI SKEWEVPCLLVADGTARTASLTENVQREAMHPADQFEAFAALVAEGRPIEDIAADFSV TPLVVQRRLKLANVSPRLMADYRADAVSLDQLMALAITDDHAAQESAFYDAPTWQRHP SNLRERLTEREIDAYRHPLVRFVGLDVYEQAGGRVRRDLFAEGDAGVYLTDAALLERL VQDKLAGIAAETKAEGWAWVDAAPAATYADLQAFQRAPRERREPNKREAQRIEKLQAK MQEVAEAVDAAMDADDENKADALQEEGETLGEQLQALEDGLQDYSPNVKAAAGAIVTI DRNGEAIIHRGLMREAEAKALRTLERLRQGFSGEDAENDDEGEDDEQPKTAAMPDRLA QRLSAHRTAALQIEVARHPQVALAAVVHGMVQTVLQESRYGHDLPLGVGLKVQDRLEG MAPDWPESPAAVALRELQQVAGEGLPEDSAALFAALLAKPQDELVRLLAVCVASTVDV VTPRATPHQPGAELAQAVGLDMAAWWQPTAEGYFKHVSKAVILDAVGAFAPESVTRLA KLKKADIASEAERLADGKGWMPAIFKATGPQDVAQEAGPEQDAPEDAEAMADEPAEAL AA" misc_feature complement(<274011..274169) /locus_tag="Alide_0248" /note="ParB-like nuclease domain; Region: ParBc; cl02129" /db_xref="CDD:154762" misc_feature complement(<273735..274097) /locus_tag="Alide_0248" /note="PRTRC system ParB family protein; Region: PRTRC_parB; TIGR03734" /db_xref="CDD:163446" gene complement(274328..275155) /locus_tag="Alide_0249" /db_xref="GeneID:10102272" CDS complement(274328..275155) /locus_tag="Alide_0249" /inference="similar to AA sequence:KEGG:Ajs_2944" /note="KEGG: ajs:Ajs_2944 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124920.1" /db_xref="GI:319760983" /db_xref="GeneID:10102272" /translation="MQLASRFASRSPSLRSDYPLSDDQIRSVAPSIFADAPHESRSER YSYIPTAAVLTELRKEGFQPFMVTQTRVRDEGKREHTKHMLRLRHASQINGAEANEIV LLNSHDGTSSYQMLAGMFRFVCSNGLVCGDTVADVRVPHKGDVAGSVIEGAFEVLSGF ERVKESRDLMRGITLDDGESEVFARAALALKYDDPDKPAPITESQILMPRRFDDRRPD LWSVFNRTQENLTKGGLHGRSANGRRQQTRPVQGIDSDVRLNRALWMLADGLRQLKA" misc_feature complement(274364..275047) /locus_tag="Alide_0249" /note="Domain of unknown function (DUF932); Region: DUF932; cl12129" /db_xref="CDD:164334" gene 276176..276409 /locus_tag="Alide_0250" /db_xref="GeneID:10102273" CDS 276176..276409 /locus_tag="Alide_0250" /inference="similar to AA sequence:KEGG:Hsero_2905" /note="KEGG: hse:Hsero_2905 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124921.1" /db_xref="GI:319760984" /db_xref="GeneID:10102273" /translation="MDKQILENHINSLKKACDACRSQLDTGAMKELDREVSKLEQLCD QLQSATDAETLKVRTLQVIAAFVSIATNIRDWL" gene 276459..276767 /locus_tag="Alide_0251" /db_xref="GeneID:10102274" CDS 276459..276767 /locus_tag="Alide_0251" /inference="protein motif:PFAM:PF01381" /note="manually curated; PFAM: helix-turn-helix domain protein; KEGG: hse:Hsero_2904 XRE family transcription regulator protein; SMART: helix-turn-helix domain protein" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain protein" /protein_id="YP_004124922.1" /db_xref="GI:319760985" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10102274" /translation="MNIGQAIQLARSKRKLSQAALAKRAGISVSYLSLLERGRRDPPL STLQRIAAALVMPVEILFFLGAEEGELGHLNRDLAGQLAITALELLNGPLPDQAEVSV " misc_feature 276468..276641 /locus_tag="Alide_0251" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(276480..276482,276492..276494,276567..276569) /locus_tag="Alide_0251" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(276489..276491,276564..276566) /locus_tag="Alide_0251" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(276510..276515,276546..276548,276555..276557, 276567..276572) /locus_tag="Alide_0251" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene 276730..277758 /locus_tag="Alide_0252" /db_xref="GeneID:10102275" CDS 276730..277758 /locus_tag="Alide_0252" /inference="similar to AA sequence:KEGG:Rmet_1473" /note="KEGG: rme:Rmet_1473 retron reverse transcriptase" /codon_start=1 /transl_table=11 /product="retron reverse transcriptase" /protein_id="YP_004124923.1" /db_xref="GI:319760986" /db_xref="InterPro:IPR000123" /db_xref="InterPro:IPR000477" /db_xref="GeneID:10102275" /translation="MDLYPIKPRYRSNPVKSIAALARGLRWDAQSLVELADRANGMWR TVKPKPGSTRQTFDAMGQLKEIHQRLKLNVFSKVDFPEYLQGSLKGRDYVTNASIHKG KQILICEDVKGFFPSVSAAFVEDVWCGFFRFSPDVAKLLTRLTTKDGYLPQGAITSSF LANLVMWRYEPWLHAKFAQRGITYSRYVDDMAMSSATHLDKETQTWIIAQVYGMLAQH GLKASRKKHEVFSASQPMIATKLTVNRKPSLSPKKQSKVRTRVRQLEIAATSGASTDE LRELANKAAQQVGQLGRFHKTPAAKLKSRIAVVRDNLSPEALSVTTAPAKVRLDTVPL VTDARPWE" misc_feature 276871..277512 /locus_tag="Alide_0252" /note="RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA...; Region: RT_Bac_retron_II; cd03487" /db_xref="CDD:73160" misc_feature order(277057..277074,277186..277191,277288..277290, 277294..277299,277444..277449) /locus_tag="Alide_0252" /note="putative active site [active]" /db_xref="CDD:73160" misc_feature order(277057..277074,277186..277188,277294..277296) /locus_tag="Alide_0252" /note="putative NTP binding site [chemical binding]; other site" /db_xref="CDD:73160" misc_feature 277189..277191 /locus_tag="Alide_0252" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:73160" gene complement(277930..278247) /locus_tag="Alide_0253" /db_xref="GeneID:10102276" CDS complement(277930..278247) /locus_tag="Alide_0253" /inference="similar to AA sequence:KEGG:Ajs_2957" /note="KEGG: ajs:Ajs_2957 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_004124924.1" /db_xref="GI:319760987" /db_xref="GeneID:10102276" /translation="MRSRPHDDAMAELFRDDPALALEVINGILADGDQAELMAVLRQL AQAVGGVQAVAEQAHLNPTQLYRTLSPKGNPALSSLSAILKAMGLRLAVQPLALPPSA HAA" misc_feature complement(277963..278247) /locus_tag="Alide_0253" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene complement(278244..278573) /locus_tag="Alide_0254" /db_xref="GeneID:10102277" CDS complement(278244..278573) /locus_tag="Alide_0254" /inference="protein motif:TFAM:TIGR02683" /note="KEGG: bpr:GBP346_A0938 probable addiction module killer protein; TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891" /codon_start=1 /transl_table=11 /product="addiction module killer protein" /protein_id="YP_004124925.1" /db_xref="GI:319760988" /db_xref="InterPro:IPR009241" /db_xref="InterPro:IPR014056" /db_xref="GeneID:10102277" /translation="MYRIEHYLTVDEQKDVYDDWLRRLRDAQAKVAVIRRVTRVEQGN FGDHKFCRDGVWELRIDAGPGYRVYYGLAGHRLVLLLCGGDKRTQDADIARAVAYWQD WQQRGDE" misc_feature complement(278265..278552) /locus_tag="Alide_0254" /note="Phage derived protein Gp49-like (DUF891); Region: Gp49; cl01470" /db_xref="CDD:194142" gene complement(278679..280043) /locus_tag="Alide_0255" /db_xref="GeneID:10102278" CDS complement(278679..280043) /locus_tag="Alide_0255" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: ajs:Ajs_2959 phage integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004124926.1" /db_xref="GI:319760989" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10102278" /translation="MAKIKLTKSAVDTAEVTGKDYELRDTIVPGFLCKVTAHGRKVFM LQYRTNWGERRKPKIGQFGELTVEQARSIAQDWLADVRKGDDPSAAKLAARMAPTVKE LCEQFIEEYSRPRNKPRTVDSYQGYIDRHILPALGKLKVPDVTRAHITTLMKDKARIG VTANRVLACLRKMFNMAEVWGYRPDGSNPCRHVPKYREDGETRYINNEELARLYAYLD RADAQGLEHPTVTLAVRLQFEFSARMTEIRTLEWAWVDFENRRVVWPDSKTGDMSKPM SEAAYQLLRNAPRIDDSPYVCPAIFDAKKPLPDSTYYNGWKRILGRAEVAHVGTHGIR HRAATDIANSGIPIKVGMALTAHKTVTQFMAYVHAEDDPVRAAAEKVATLRRGAIDGQ AQAAPTPTAPASVLAVADGEKTRTSQGNYRPYRHRKSPTRAVPPGTKRAGSPSTKAPE TAIA" misc_feature complement(278910..279941) /locus_tag="Alide_0255" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(278937..279437) /locus_tag="Alide_0255" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature complement(order(278946..278948,279051..279056, 279066..279068,279240..279242,279312..279317)) /locus_tag="Alide_0255" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature complement(order(278946..278948,278973..278975, 279042..279044,279051..279053,279240..279242, 279315..279317)) /locus_tag="Alide_0255" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature complement(order(278946..278948,278973..278975, 279042..279044,279051..279053,279315..279317)) /locus_tag="Alide_0255" /note="active site" /db_xref="CDD:29495" repeat_region 280252..283652 /note="CRISPRS" /rpt_unit_range=280252..280288 gene complement(284052..284594) /locus_tag="Alide_0256" /db_xref="GeneID:10102279" CDS complement(284052..284594) /locus_tag="Alide_0256" /EC_number="2.7.1.71" /inference="protein motif:PRIAM:2.7.1.71" /note="KEGG: dia:Dtpsy_0168 shikimate kinase; PFAM: shikimate kinase" /codon_start=1 /transl_table=11 /product="shikimate kinase" /protein_id="YP_004124927.1" /db_xref="GI:319760990" /db_xref="InterPro:IPR000623" /db_xref="GeneID:10102279" /translation="MQTRCALVGMPGSGKSTVGRQLARRLGLPFIDLDQRLEQQLGTS IRNYFEQHGEQAFRDHESALLAALADEPGGMILSTGGGAVLRPENREALRRSFPHVMY LRASPEEIFRRIKHDRTRPLLQVADPLARLRELYRDRDPLYRETARYVIETGRPTVNT LVNMAMMQLEMAPGKPDLNT" misc_feature complement(284079..284594) /locus_tag="Alide_0256" /note="shikimate kinase; Reviewed; Region: aroK; PRK00131" /db_xref="CDD:178887" misc_feature complement(284121..284579) /locus_tag="Alide_0256" /note="Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the...; Region: SK; cd00464" /db_xref="CDD:30188" misc_feature complement(order(284121..284123,284235..284237, 284256..284258,284544..284561)) /locus_tag="Alide_0256" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:30188" misc_feature complement(order(284493..284495,284499..284501, 284547..284549)) /locus_tag="Alide_0256" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:30188" misc_feature complement(order(284178..284180,284349..284357, 284412..284414,284421..284423,284493..284495)) /locus_tag="Alide_0256" /note="putative shikimate binding site; other site" /db_xref="CDD:30188" gene 284700..285599 /locus_tag="Alide_0257" /db_xref="GeneID:10102280" CDS 284700..285599 /locus_tag="Alide_0257" /inference="protein motif:PFAM:PF03631" /note="PFAM: ribonuclease BN; KEGG: ajs:Ajs_0151 ribonuclease BN" /codon_start=1 /transl_table=11 /product="ribonuclease bn" /protein_id="YP_004124928.1" /db_xref="GI:319760991" /db_xref="GO:0004540" /db_xref="InterPro:IPR004664" /db_xref="GeneID:10102280" /translation="MQNLNQGARRLMQPAAPLLRAVQLWLDAEGLRMSAAMSFYGMLS LAPLLLLLVGVLGWWVDKAYLESSLVAQVQGVMGERGAEVVRMALASAKAPAQGWLAS IAGFVLLLSGATGVFAELQSALARLWVHGRAAPERKPWWHMASLRLRGLAYVLAIGFL LLISLVLSTAIKVLATWAGALLPFGAGVLLQFVNEAVAFAVAVLLFVGLMRIGSGPKP PLSCLVLGAAVGAALFTAGKQLLAWYLSTAAVVSAYGAAGSLVVLLMWIYFSSAVLLF GASCARALDEARTAAGAQPVGQG" misc_feature 284775..285563 /locus_tag="Alide_0257" /note="Ribonuclease BN-like family; Region: Ribonuclease_BN; cl07918" /db_xref="CDD:195647" gene 285725..286441 /locus_tag="Alide_0258" /db_xref="GeneID:10102281" CDS 285725..286441 /locus_tag="Alide_0258" /inference="similar to AA sequence:KEGG:Ajs_0152" /note="KEGG: ajs:Ajs_0152 17 kDa surface antigen" /codon_start=1 /transl_table=11 /product="17 kda surface antigen" /protein_id="YP_004124929.1" /db_xref="GI:319760992" /db_xref="GeneID:10102281" /translation="MNPATSSQPAASVKWLWAAVGALGVSVLALGGTLLAQNLRGDAS PAAQATAAALRTPESEIIDEKAPQGQAQQALAATDSRAVQSRRAPMPQADSYLQPAAQ SRPAAPVCASCGRVESVQAIEQAAPATGLGAVAGGVLGGVLGNQIGKGSGRTAATVLG AVGGGYVGHKVEERTRTTTVYQMRVRMQDGSVRSFTRSQPVAEGTPVRVQGKGFRVDD GSGDADRAGTQPVRVVDRGY" sig_peptide 285725..285835 /locus_tag="Alide_0258" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.752) with cleavage site probability 0.635 at residue 37" gene complement(286498..287271) /locus_tag="Alide_0259" /db_xref="GeneID:10102282" CDS complement(286498..287271) /locus_tag="Alide_0259" /EC_number="1.18.1.2" /inference="protein motif:PRIAM:1.18.1.2" /note="KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein" /codon_start=1 /transl_table=11 /product="ferredoxin--nadp(+) reductase" /protein_id="YP_004124930.1" /db_xref="GI:319760993" /db_xref="InterPro:IPR001433" /db_xref="InterPro:IPR001709" /db_xref="InterPro:IPR008333" /db_xref="InterPro:IPR017927" /db_xref="GeneID:10102282" /translation="MSAFHEERVLSVHHWTDRLFSFTTTRDPALRFSNGHFTMIGLKV NDKPLLRAYSIVSANYEEHLEFLSIKVPDGPLTSRLQHIKVGDSIIVGKKPTGTLLID YLLPAKRLYLMSTGTGLAPFLSVIRDPETYEKFEEVVLIHGVRQVAELAYHDYITREL PKHEFLGELVTKQLKYYPTVTREPFRNQGRIPNLIESGKLFTDLGVPPLDPLTDRAML CGSPEMLASLKTILEHRDFEEGNTTRPGDFVIERAFVEK" misc_feature complement(286510..287271) /locus_tag="Alide_0259" /note="Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018" /db_xref="CDD:31221" misc_feature complement(286513..287250) /locus_tag="Alide_0259" /note="Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently...; Region: FNR1; cd06195" /db_xref="CDD:99792" misc_feature complement(order(286513..286515,286921..286923, 287041..287046,287050..287052,287059..287061, 287065..287067,287071..287073,287110..287121, 287161..287163)) /locus_tag="Alide_0259" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99792" misc_feature complement(order(287110..287115,287119..287121)) /locus_tag="Alide_0259" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99792" misc_feature complement(order(286981..286983,286987..286989, 287014..287016,287032..287034,287041..287043, 287050..287052)) /locus_tag="Alide_0259" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99792" misc_feature complement(order(286909..286911,286915..286926, 286936..286938)) /locus_tag="Alide_0259" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99792" misc_feature complement(order(286609..286614,286837..286845, 286918..286923)) /locus_tag="Alide_0259" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99792" gene 287464..288660 /locus_tag="Alide_0260" /db_xref="GeneID:10102283" CDS 287464..288660 /locus_tag="Alide_0260" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_0172 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004124931.1" /db_xref="GI:319760994" /db_xref="InterPro:IPR000709" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10102283" /translation="MHKRFTAFVAALAWGLGAAQAQDVYTIGEINSYKAQPAFLEPYK KGMELAVAQVNATGGVGGKKLRLVTRDDNGNPGDAVRAAEELIAREKVDVLMGSFLSH VGLALTDFAQQKKRFFLAAEPLTDKIVWENGNRYTFRLRPSTYMQVAMLVPEAAAMKK KRWAIVYPNYEYGQSAVATFKQLLKAAQPDVEFVAEQAAPLGKVDAGSVVQALADAKP DAIFNVLFAADLAKFVREGNTRGLFAGKGVVSLLSGEPEYLDTLKGEAPEGWIVTGYP WYAIHTPDHEAFLDAYKKRFKDYPRAGSVVGYNAIQSIAAGLKKAGSADTEKLIAAFR GLEVRTPFGPITYRAQDHQSTMGAYVGKTGLYGGKGVMVDFKYMDGAKFQPSDAEVKK LRPAAP" sig_peptide 287464..287529 /locus_tag="Alide_0260" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 22" misc_feature 287530..288585 /locus_tag="Alide_0260" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 287539..288552 /locus_tag="Alide_0260" /note="Periplasmic solute-binding domain of active transport proteins; Region: PBP1_Arsenic_SBP_like; cd06330" /db_xref="CDD:107325" misc_feature order(287758..287766,287827..287835,287977..287979, 288139..288141,288217..288219) /locus_tag="Alide_0260" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107325" gene 288677..290575 /locus_tag="Alide_0261" /db_xref="GeneID:10102284" CDS 288677..290575 /locus_tag="Alide_0261" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: ajs:Ajs_0155 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004124932.1" /db_xref="GI:319760995" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10102284" /translation="MDFSGLLAQLLNGLAGASTLFLVAAGLSLIFGVTRIVNFAHGSF YMLGLFAAYSCVEQLAGAIGFWPALLLAPLAVGLLGALVELLLLRRIYHASELLQLLA TFALVLVIKDAALWLWGPEELFGPRAPGLAGAVDLLGRRFPAYDLFLIAVGPLVLVLL TLLLTRTRWGTLVRAATQDREMVGALGVNQAWLFTGVFALGALLAGLGGALQLPREPA SLELDMLTIGAAFVVVVVGGMGSIPGAFVAALLIAELKAVCIWLGVVQVGGVAVAFPK LTLVVEFLVMALVLVWRPWGLMGRPQAAVRAPGAPEALLHGAGARAAAAWAALLVALA LLPLAAGQEGYATVLLTDVAIAALFAASLHFILGPGGMHSFGHAAYFGLGAYGAALLV RWLDLPMGAALLLGPLAAAAGALVYGWFCVRLSGVYLAMLTLAFAQITWAVAFQWDGL TGGSNGLTGIWPPEWAAQGAAFYWLALALAAAGVYLLRRMLFAPLGWALRAARDSAPR AEAIGIHVRRVQWAAFVVAGLLAGLAGALFAFSKGGVAPDALWVGKSVDGLVMVLLGG VQQLAGPLVGAAAFTWLHDSVARATDYWRALLGGTMLVLVLLFPQGISGFAQYWQAKT ALKKGVAA" misc_feature 288728..289570 /locus_tag="Alide_0261" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 289217..289273 /locus_tag="Alide_0261" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" misc_feature 289733..290461 /locus_tag="Alide_0261" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 290195..290251 /locus_tag="Alide_0261" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 290572..292110 /locus_tag="Alide_0262" /db_xref="GeneID:10102285" CDS 290572..292110 /locus_tag="Alide_0262" /inference="protein motif:PFAM:PF00005" /note="KEGG: vei:Veis_0860 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004124933.1" /db_xref="GI:319760996" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102285" /translation="MTLLRVENLRKSFGGVQAVQGVSFALAAGELLALIGPNGAGKST TFNMVDGQLAPDGGRVLLDGQDITGLSPRAIWRRGVGRTFQIAQTFASFSVLQNVQLA LLSHDRKAWRWWRRADAHRPQDALALLEQVGMAAQAHRPCSELAYGDVKRVELAMALA HAPRLLLMDEPTAGMAPAERLALMRLVQRLARERRMAVLFTEHSMDVVFGQADRVAVL VRGQLLAEGTPDAIRQDERVQQVYLGQGLQDFEKNSCQRPPAKGSGPKTPEMPGAPLL QMQDLDAWYGAAHILHGVSLAVGRGEVVALMGRNGAGKSTTLKSIAGLLQRRSGRMAF MGRRIDTLAPHQIARLGLGYVPEDRRIFTDLTVLENLEAGRQPPRHWPGGQPVPHWTP QRLFALFPNLGEMPNRPGGRMSGGEQQMLTVARTLMGQPCLVLLDEPSEGVAPVIVEQ MARTILALKAQGMGILLSEQNLPFAQAVADRAYVLEQGRIVHEAPMAELARDVQARKQ YLGV" misc_feature 290572..291303 /locus_tag="Alide_0262" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 290581..291285 /locus_tag="Alide_0262" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 290677..290700 /locus_tag="Alide_0262" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(290686..290691,290695..290703,290824..290826, 291076..291081,291178..291180) /locus_tag="Alide_0262" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 290815..290826 /locus_tag="Alide_0262" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 291004..291033 /locus_tag="Alide_0262" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 291064..291081 /locus_tag="Alide_0262" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 291088..291099 /locus_tag="Alide_0262" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 291166..291186 /locus_tag="Alide_0262" /note="H-loop/switch region; other site" /db_xref="CDD:72978" misc_feature 291388..292107 /locus_tag="Alide_0262" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 291397..292077 /locus_tag="Alide_0262" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 291493..291516 /locus_tag="Alide_0262" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(291502..291507,291511..291519,291640..291642, 291880..291885,291979..291981) /locus_tag="Alide_0262" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 291631..291642 /locus_tag="Alide_0262" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 291808..291837 /locus_tag="Alide_0262" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 291868..291885 /locus_tag="Alide_0262" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 291892..291903 /locus_tag="Alide_0262" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 291967..291987 /locus_tag="Alide_0262" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 292258..295158 /locus_tag="Alide_0263" /db_xref="GeneID:10102286" CDS 292258..295158 /locus_tag="Alide_0263" /inference="protein motif:PFAM:PF00112" /note="KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: peptidase C1A papain; SMART: peptidase C1A papain" /codon_start=1 /transl_table=11 /product="peptidase c1a papain" /protein_id="YP_004124934.1" /db_xref="GI:319760997" /db_xref="GO:0008234" /db_xref="InterPro:IPR000668" /db_xref="GeneID:10102286" /translation="MPTYLLRQGSQDPLVARLRKVLVAELGDAAESYPQLDKGGATFD AMLDAALRCWQNGRGLIADGIVGPCNLLALGLADWPPLDCELNTDSVHALFPATKPVN IARYLGYVTAALRAVGLLGRDMVLAALGTIRAETEGFVPISEFQSKYNTAPGGAPFAL YDGRLGNRRGEGAMFRGRGFVQLTGRSNYETYGAKLGLDLAATPELANAPEVAALLLA LFLDAHRDAMQACLAAGDLKGARRLVNGGSHGLANFQSVFELAQNALPAAAAPAAPPP VGRRAGGRAGATATRKRAPRGQAAQEPASGRTLNAQADAPDLRDRPYTPPPASLQPEW PTTEAVTQWLPAYAKAGLVLNQGQEGACTGFGLAGVVNYLRWVRAGLPKAMVSVSPRM LYNMARRYDEYAGENYEGSSCRGAIKGWFNHGVCLEDDWPYQAAAQLPPHFGFAERAR GTTVGVYYRIDTSSISDLQAAIMHVGAIFVSSYVHAGWQEVATSTLPKGHASLPVIAF DGIPRRDAGHAYALVGYNDRGFVLQNSWGPGWGAHGFAVLSYEDWLQHAMDAWVVALG VPGLIGGGRNVPLAAGGRAAAGGGWSESQTLDHVISVGNDGRMSRYLTTDERTRNLSY QVSVLPDQWFRAQPPEGKKRLILYVHGGLNSEADGIKRARSLGRLFEANGCYPLFVVW HTGLLESIRYYLDDWRAGRPAAAGVKEWATERTDALIESTIGRTVVRALWSEMKENAG YAWQATRAGDLLVRALGELRALWGDQLEVHLMGHSAGSIWLGHMLTWMAKAQATSGAP GLREAVAGVHLYAPACTVAFANQHFADKALLGRTHVAVLSDDRERDDNTAYIYRKSLL YLVSNALEQDRRTPLLGLERALTGRNDQNTWDGASTTGETLAIWRRAAAEARLASRLK IVSEDKVLTATPDVRIPASHGAFDNDVAIVGATLERICGQPLREPPRDLRGY" misc_feature <292261..>292479 /locus_tag="Alide_0263" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2989" /db_xref="CDD:32808" misc_feature <292738..293016 /locus_tag="Alide_0263" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" misc_feature 293311..293943 /locus_tag="Alide_0263" /note="C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some...; Region: Peptidase_C1; cd02619" /db_xref="CDD:30293" misc_feature order(293323..293325,293341..293343,293809..293811, 293857..293859) /locus_tag="Alide_0263" /note="active site" /db_xref="CDD:30293" gene complement(295191..296515) /locus_tag="Alide_0264" /pseudo /db_xref="GeneID:10102287" gene complement(296512..297043) /locus_tag="Alide_0265" /pseudo /db_xref="GeneID:10102288" gene complement(297101..298636) /locus_tag="Alide_0266" /db_xref="GeneID:10102289" CDS complement(297101..298636) /locus_tag="Alide_0266" /inference="protein motif:TFAM:TIGR00368" /note="TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: dia:Dtpsy_0179 Mg chelatase, subunit ChlI; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="mg chelatase, subunit chli" /protein_id="YP_004124935.1" /db_xref="GI:319760998" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR001208" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004482" /db_xref="GeneID:10102289" /translation="MSLALVQSRALLGLQASAVTVEVHLANGLPSFALVGLADVEVKE ARERVRSALQNAGLEFPTNKKITVNLAPADLPKDSGRYDLPIALGILAASGQIAAERL AGWEFAGELSLSGLLRPVRGALATSLALRAEQPPVRMVLPPGSAEEAALVPGAEIYRA RHLLDVVRQFLPAAAPPQEDDDGWQRLAPAAPAVHTSSPDLADVKGQAAAKRALEIAA AGGHGLLLVGPPGSGKSMLAQRFASLLPPMSVEQALESAAIASLAGRFTGAQWMQRVT ASPHHSCSAVALVGGGSPPRPGEISLAHEGVLFLDEFPEFARSALEALREPLETGLIT ISRAAQRAEFPARFQLVAAMNPCPCGFAGSAQRACRCTPDQVARYQGKLSGPLLDRID LHVEVPHLPAEDLLNAPAGEASSAVRERVARAHALALARQGTPNQALQGQQLDRMAAL DEAAARFLQTAAARMGWSARGTHRALKVARTIADLAASEQVGMAHVAEAVQYRRVLRG TQA" misc_feature complement(297116..298594) /locus_tag="Alide_0266" /note="Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]; Region: COG0606" /db_xref="CDD:30951" misc_feature complement(297422..298039) /locus_tag="Alide_0266" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 298775..299506 /locus_tag="Alide_0267" /db_xref="GeneID:10102290" CDS 298775..299506 /locus_tag="Alide_0267" /inference="protein motif:PFAM:PF09694" /note="PFAM: Conserved hypothetical protein CHP02001; KEGG: dia:Dtpsy_0180 hypothetical protein" /codon_start=1 /transl_table=11 /product="conserved hypothetical protein chp02001" /protein_id="YP_004124936.1" /db_xref="GI:319760999" /db_xref="InterPro:IPR010239" /db_xref="GeneID:10102290" /translation="MSHASLKSLSLALVAAAMPVLASAELTANVALTSNYKFRGQDQD VHRIKAVSPAIQGGFDYTFGESGFYLGNWNSSVDWLQGNSIESDLYGGYRFKAGALDL DLGALAYIYPGNTAGNTTELYGAATWGPLTAKYSHTVSKDYFGWAGAKTSGLRGRNTG YLNLAFAREVAPSVTLKAAVGYTRFAGDIRDLGVPSYVDYSVGGAYDFGAGLSLSAAV AGANKKGFFGDANKARLIVTLSKTL" sig_peptide 298775..298849 /locus_tag="Alide_0267" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.729 at residue 25" misc_feature 298847..299398 /locus_tag="Alide_0267" /note="Bacterial protein of unknown function (Gcw_chp); Region: Gcw_chp; cl09901" /db_xref="CDD:164168" gene 299526..299864 /locus_tag="Alide_0268" /db_xref="GeneID:10102291" CDS 299526..299864 /locus_tag="Alide_0268" /inference="protein motif:PFAM:PF00543" /note="PFAM: nitrogen regulatory protein P-II; KEGG: aav:Aave_0233 nitrogen regulatory protein P-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein p-ii" /protein_id="YP_004124937.1" /db_xref="GI:319761000" /db_xref="GO:0030234" /db_xref="InterPro:IPR002187" /db_xref="InterPro:IPR002332" /db_xref="InterPro:IPR017918" /db_xref="GeneID:10102291" /translation="MKMITAIIKPFKLDEVREALSDVGVQGITVTEVKGFGRQKGHTE LYRGAEYVVDFLPKVKIEAAVADDLAERVIEAIEGAARTGKIGDGKIFVADLEQVVRI RTGETGGQAL" misc_feature 299535..299840 /locus_tag="Alide_0268" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene 299887..301275 /locus_tag="Alide_0269" /db_xref="GeneID:10102292" CDS 299887..301275 /locus_tag="Alide_0269" /inference="protein motif:TFAM:TIGR00836" /note="KEGG: ajs:Ajs_0164 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="YP_004124938.1" /db_xref="GI:319761001" /db_xref="GO:0008519" /db_xref="InterPro:IPR001905" /db_xref="InterPro:IPR002229" /db_xref="InterPro:IPR018047" /db_xref="GeneID:10102292" /translation="MRKLLASLALGLHLLAGGTAALAQAPAAAPEPVAAAAAPAPDAA PATAPEAAPAPKVDSGDTAWMLTSTLLVILMTIPGLALFYGGLGRAKNMLSVLMQVFV VFSLISILWSLYGYSLAFSGEGRLVGDLSKAFLQGVGPETFGALATIPEYVFLAFQGT FAAITVALVVGSFAERMRFSAVLIFALLWFTFSYVPMAHIVWGGGLLAQDGALDFAGG TVVHINAGIAGLVGAYMVGKRIGFGREAFTPHSLTLTMVGASLLWVGWFGFNAGSAGA ANAAAGLAFVNTVLATAAATLSWIAGEAVHKGKASMLGAASGAVAGLVAVTPAAGFVG PMGAIAIGLVAGLVCLWGVGGLKRMLRVDDAFDVFGVHGVGGIVGAILTGVFAAQGLG GTGGATPETFSMGAQVWIQTKSVLFTIVWSGVVSVVAYKIADLLVGLRVDEESERQGL DISAHGETAYHR" sig_peptide 299887..299958 /locus_tag="Alide_0269" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.964 at residue 24" misc_feature 300055..301272 /locus_tag="Alide_0269" /note="Ammonium Transporter Family; Region: Ammonium_transp; cl03012" /db_xref="CDD:194508" gene 301369..302247 /locus_tag="Alide_0270" /db_xref="GeneID:10102293" CDS 301369..302247 /locus_tag="Alide_0270" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_5424 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124939.1" /db_xref="GI:319761002" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102293" /translation="MKIPPLNPLKVFEVVARTGNLTLAASELNVSQSAVSRQVAVLEE YLGVQLFTRERVGVRLTEVGEGYARRIGPAFGEIAAATEAITRKYSNNVIRLRTYTTL TARWLIPRLPHFKARHPEVEVSILNSTAPLDFGAEQCDLAIVLGDGHWPGAEATLLLE DIVEPVCAPGFIAEGAPPEALRGKRLLVSKYRKDDWPRWLAHAGLPELFETAETMVFS SSILTWQAAVDGLGIAIGQQHMLEADFQAGRLVRPLARPLRTGKGHYLVTPALQRYSG KIAAFKDWLMVEAMKK" misc_feature 301372..302235 /locus_tag="Alide_0270" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature 301384..301563 /locus_tag="Alide_0270" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 301645..302223 /locus_tag="Alide_0270" /note="HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432" /db_xref="CDD:176123" misc_feature order(301645..301668,301672..301725,301729..301749) /locus_tag="Alide_0270" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176123" misc_feature order(301663..301668,301672..301674,302020..302028, 302086..302088) /locus_tag="Alide_0270" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176123" gene complement(302321..303196) /locus_tag="Alide_0271" /db_xref="GeneID:10102294" CDS complement(302321..303196) /locus_tag="Alide_0271" /EC_number="1.1.1.60" /inference="protein motif:PRIAM:1.1.1.60" /note="KEGG: rme:Rmet_4431 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="2-hydroxy-3-oxopropionate reductase" /protein_id="YP_004124940.1" /db_xref="GI:319761003" /db_xref="InterPro:IPR006115" /db_xref="GeneID:10102294" /translation="MSGPVLGFIGVGVMGEGMCRNLLAKSGLPVHVADVQAENVARLA AQGAVASSVRALRETAHTVFLSLPSIDQVEEVCLGADPLVAPGGSVKTVVDMSTSDVP RTRALAGRLAALGVRFLDAPVARSREAANNGTLLITVGGPADLFETVAPWLRCMGSDV VHCGGVGAGQVVKIMNNMVLLSTVNSLAEAMAIAEAAGVDKALLAGVLRLGSADSFAL KLTGERLATDVFPEKLFPTAYALKDLKLALGLAQASGIQPAVAQATAALLDAACARGY AMNYYPVIYRLVEKQ" misc_feature complement(<302660..303181) /locus_tag="Alide_0271" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(302705..303181) /locus_tag="Alide_0271" /note="NAD binding domain of 6-phosphogluconate dehydrogenase; Region: NAD_binding_2; pfam03446" /db_xref="CDD:190635" gene complement(303193..304623) /locus_tag="Alide_0272" /db_xref="GeneID:10102295" CDS complement(303193..304623) /locus_tag="Alide_0272" /inference="protein motif:PFAM:PF00171" /note="PFAM: Aldehyde Dehydrogenase; KEGG: amd:AMED_3840 succinate-semialdehyde dehydrogenase (NADP+)" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="YP_004124941.1" /db_xref="GI:319761004" /db_xref="GO:0016491" /db_xref="InterPro:IPR015590" /db_xref="GeneID:10102295" /translation="MQYSQFIAGGFRQGTSAERFTVIDPSTGQPLGDYAYATPEDVQA AIDAAAKALRSWSRTPAYERATLLRRVAALMRERGSAIAAQIARELGKPIGEAQKEVV TAAEMFEWAAEEARRIYGRTIPPRGAGITQTMALEPIGVVAAFAGWNAPAITPSRKIS GALAAGCTIVIKPSEETAGVALHIAKAVQDAGVPDGVMNMVFGEPGAIADQLCASPQV HMVTFTGATSVGKQIGAKAALTMKRATLELGGHAPVIVCDDTDADRVARAAVATKYRN AGQVCTSPTRFLVQAGVFDAFLERFVQDAQALKVGDPFDAATQMGPLKNQRRLQSIER IVQDARERGLTIATGGERTGTEGFFYRPTVIVRPSLDCDAANIEPFGPVALISPFGDL DEAIAEANRLSFGLAAYAFTNHVRRAHRLAGEIDSGVVCINEWQASLPETPFGGHKDS GLGSEGGVEGLMEFLRVKCVRQGVQA" misc_feature complement(303214..304578) /locus_tag="Alide_0272" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(303214..304560) /locus_tag="Alide_0272" /note="Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103" /db_xref="CDD:143421" misc_feature complement(order(303214..303228,303262..303264, 303277..303279,303295..303300,303307..303309, 303325..303345,303349..303351,303358..303360, 303364..303366,303376..303381,303385..303387, 303589..303591,303727..303729,303739..303741, 303910..303912,303919..303921,303931..303933, 303967..303969,304213..304215,304228..304236, 304252..304278,304282..304287,304294..304296, 304417..304419,304444..304446)) /locus_tag="Alide_0272" /note="tetramerization interface [polypeptide binding]; other site" /db_xref="CDD:143421" misc_feature complement(order(303292..303294,303406..303408, 303484..303486,303490..303492,303781..303783, 303877..303885,303925..303930,303937..303939, 303946..303957,304099..304104,304108..304110, 304153..304155,304177..304191)) /locus_tag="Alide_0272" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143421" misc_feature complement(order(303781..303783,303790..303792, 303883..303885,304177..304179)) /locus_tag="Alide_0272" /note="catalytic residues [active]" /db_xref="CDD:143421" gene complement(304623..305603) /locus_tag="Alide_0273" /db_xref="GeneID:10102296" CDS complement(304623..305603) /locus_tag="Alide_0273" /inference="similar to AA sequence:KEGG:BB3069" /note="KEGG: bbr:BB3069 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124942.1" /db_xref="GI:319761005" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR005829" /db_xref="GeneID:10102296" /translation="MTSLSKRALVLGAAALTLGGHAFAQGAADWPAAKPVTIVVGFSA GGPTDVVARIVAEQLSAKFKQSFVVDNKAGASGGVAANLVKQAAPDGYTLMFGSSSTL SIIPTLQKTAYDPLRDFTAIALVASYPYFLVVPASSSIKSLDELLKQGRAGGSQLSYG SAGNGAVNHLAGEWFKHEAKINAVHIPYKGDSAAVTDLVAGRLDFAFLAGSVALPQVK AGKMRVLASASAVAGRGGEGVPTLGERYKGFAAEPWNGLMGPRGVPEPIVARLNAAVN EIMARPDVLARLAPMEQYAFTGTPRQFTDHIKSQTERWAAVIQSSNIQAD" sig_peptide complement(305529..305603) /locus_tag="Alide_0273" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.773 at residue 25" misc_feature complement(304629..305531) /locus_tag="Alide_0273" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(304635..305453) /locus_tag="Alide_0273" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(305633..306412) /locus_tag="Alide_0274" /db_xref="GeneID:10102297" CDS complement(305633..306412) /locus_tag="Alide_0274" /inference="similar to AA sequence:KEGG:Mrad2831_3256" /note="KEGG: mrd:Mrad2831_3256 beta-lactamase domain-containing protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain-containing protein" /protein_id="YP_004124943.1" /db_xref="GI:319761006" /db_xref="GeneID:10102297" /translation="MSEYQILAVKYATVDRARGSNFLHSAPGDPDAPMALDFFVWLID GPGGAVLVDTGFSPASAIARGRRYLVSPPESLRRLGHAPESIRDVVVTHLHYDHAGNV GEFPAATAWVQDREMRYATGDCMCDPKQNHFFSTDDVAVLIRRLYQGSVRLVDGFHEL RDGIELHRVGGHTDGLQVARVRTARGWVVLASDAAHYYENLALQNPFPAIFSLPDMLA GYARIRALADGEDLIVPGHDPAVCTRFESAGVPGVHAYRIA" misc_feature complement(305702..306295) /locus_tag="Alide_0274" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(306409..307635) /locus_tag="Alide_0275" /db_xref="GeneID:10102298" CDS complement(306409..307635) /locus_tag="Alide_0275" /inference="similar to AA sequence:KEGG:Reut_B3887" /note="KEGG: reu:Reut_B3887 UreA/short-chain amide ABC transporter" /codon_start=1 /transl_table=11 /product="urea/short-chain amide abc transporter" /protein_id="YP_004124944.1" /db_xref="GI:319761007" /db_xref="GeneID:10102298" /translation="MTFTPTKAALGAALLAASMLAPAQDKGARISDGIVKIGVLTDIN GPFMDNVGKGSIVATEIAIEEFKGKVLGYPIQMVTADHQNKADVASTRVREWFDRDQV DAVTELGNSAVALAAMRLAQDKNRISIVTGAGAVRISNEDCTPNNLHWVYDTYSLAKV GTQSVVKGGAKTWYYLTADYAFGHSLENDGRHFIEAAGGKVLGSSRYPFPGNDFASYI IKAQGSKANAVAIATAGLDLQNAIKQGKEFGLASGGQKTVAMLMSIMDVHGVGLKDAG GMLFAESFYWDLDDASRAFSRKFFERTKRMPTALQAGQYSATLNYLKAIQKARSDDVA DVMKAIKSMPIEDAFAKNGKVRADGKMVHDMYLVRVKTPKESQAAWDYYTVLETVPGA QAFHSAAESKCPLLKP" sig_peptide complement(307573..307635) /locus_tag="Alide_0275" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.665) with cleavage site probability 0.294 at residue 21" misc_feature complement(306487..307557) /locus_tag="Alide_0275" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(306532..307530) /locus_tag="Alide_0275" /note="Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family; Region: PBP1_SBP_like_1; cd06327" /db_xref="CDD:107322" misc_feature complement(order(306853..306855,306934..306936, 307090..307092,307234..307242,307303..307311)) /locus_tag="Alide_0275" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107322" gene complement(307797..308687) /locus_tag="Alide_0276" /db_xref="GeneID:10102299" CDS complement(307797..308687) /locus_tag="Alide_0276" /EC_number="1.1.1.31" /inference="protein motif:PRIAM:1.1.1.31" /note="KEGG: esa:ESA_04058 hypothetical protein; PFAM: 6-phosphogluconate dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="YP_004124945.1" /db_xref="GI:319761008" /db_xref="InterPro:IPR006115" /db_xref="GeneID:10102299" /translation="MKAGFIGLGRMGFALASHLLRNGVQLAVHDIQSAPVDKLVALGA SRAASVQALAAGADVVFTMLPGPKQSREVILGEGGVLAGLRRGGCLVELSTIDTDTVD ALAAAAEKQGVRFADAPVGRLAAHADRGESLFMLGAHDADRVALEPLLLKMGTTVLHC GAPGSGTRMKLINNLMVLCYCQLNSEVLVLAGALGLDARKTFDVLTGTTASNGQLKEK WPVKVLAGDLTPGFDIALGFKDLTLACQAAQSAGVSLPMGNLARSLFQLARHAGKDGQ DTSCMTDFWAESNGQPPVRL" misc_feature complement(307851..308687) /locus_tag="Alide_0276" /note="3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084" /db_xref="CDD:32267" misc_feature complement(<308166..308687) /locus_tag="Alide_0276" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(308684..309544) /locus_tag="Alide_0277" /db_xref="GeneID:10102300" CDS complement(308684..309544) /locus_tag="Alide_0277" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_2534 carboxylesterase protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004124946.1" /db_xref="GI:319761009" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10102300" /translation="MRVEKEAATGGYVNFDIAGRMCRVYYETAGSGQPLLCLHTAGSD TRQYRALLNSPELTANHQVICFDMPWHGKSSPPEGWHTEEYRLTSALYVQTILAFMDA MQVERPIAMGCSIGGRVVLHLALQCPERFKALIGLQSGAHVNPYYDLDWLHRPDVHGG EVCAGIVSGLVGPGAPERDRWETLWHYMQGGPGVFKGDLHFYTGEGDLRGRVQRIDTA RCPLYLLTGEYDYSCTPEDSEDLARLIPGAQLQIMPGLGHFPMSEAPQEFLRHLLPVL QRIHTNEGNT" misc_feature complement(308726..309463) /locus_tag="Alide_0277" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature complement(308732..309442) /locus_tag="Alide_0277" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene complement(309534..309884) /locus_tag="Alide_0278" /db_xref="GeneID:10102301" CDS complement(309534..309884) /locus_tag="Alide_0278" /inference="similar to AA sequence:KEGG:Tcur_0017" /note="KEGG: tcu:Tcur_0017 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124947.1" /db_xref="GI:319761010" /db_xref="GeneID:10102301" /translation="MHTTNDDWLAHQGRWVNVTFLLRKGDAEYLVTLRDGRVQRIAPG PHVMPCWTFALVASDDAWERFWAAEPQPRFHDLMAMVRFKALRIEGDMTVFMRNLLYF KALVKQLGGHIHAR" gene complement(309967..311034) /locus_tag="Alide_0279" /db_xref="GeneID:10102302" CDS complement(309967..311034) /locus_tag="Alide_0279" /inference="protein motif:TFAM:TIGR03082" /note="KEGG: vap:Vapar_4786 membrane protein AbrB duplication; TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase" /codon_start=1 /transl_table=11 /product="membrane protein abrb duplication" /protein_id="YP_004124948.1" /db_xref="GI:319761011" /db_xref="InterPro:IPR007820" /db_xref="InterPro:IPR017516" /db_xref="GeneID:10102302" /translation="MRSTLSKLLTLLLAWAAAEGCRRLRMPVPWMLGPLLATALATMA GQPTRSSLRLRNCGQWVMGASLGLYFTPPVVAQLIGLWWAVLAAVAWALALGAAYGRW LYRSCAGRLRGVSDAALRPSAYFAGAIGAASEMTLLAEREGARTDLVAASHSLRMLIV VLVMPFGMLLAKAWWNLETVDLVPPASAPFAAAGLAWLALFTGAGGLALQLGRLPNPW FLGPLLVAIGLSATGTAPSGVPTPLSNAAQLVIGVSLGVRFSPLFLHTAPRWLAQVAL GTLGLLAACAAFGLLLAWATGLHAATAILGTAPGGMTEMSITAKVLQLGVPVVTALQV TRLVAVLVLVRPAYRLWARQP" misc_feature complement(310537..310977) /locus_tag="Alide_0279" /note="membrane protein AbrB duplication; Region: Gneg_AbrB_dup; TIGR03082" /db_xref="CDD:188278" misc_feature complement(309970..310947) /locus_tag="Alide_0279" /note="Putative ammonia monooxygenase; Region: AmoA; pfam05145" /db_xref="CDD:113899" misc_feature complement(310054..310389) /locus_tag="Alide_0279" /note="membrane protein AbrB duplication; Region: Gneg_AbrB_dup; TIGR03082" /db_xref="CDD:188278" gene complement(311037..312383) /locus_tag="Alide_0280" /db_xref="GeneID:10102303" CDS complement(311037..312383) /locus_tag="Alide_0280" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_3318 MmgE/PrpD family protein" /codon_start=1 /transl_table=11 /product="mmge/prpd family protein" /protein_id="YP_004124949.1" /db_xref="GI:319761012" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10102303" /translation="MPTQDTTAAQRFAAFAASLNDAPLTPEVIHHAKRAIVDWYAALL PGAVESPPTLLERALADDLDRGGARLALGRAATVRAAALINGTAAHTVEVDDIYREAI YHPGAPTIAAALALAQARRATGLQMIRAVVAGYEVSTRIGAALGRAHYRHWHNTGTVG TFGAVSAAATLLGLDAGRHAHALCTGATFAAGLQQAFRMDSMSKPLHAGHAAEAGVLA ALAAEQGVTGSLDVLDGEAGLGRAMSDGPDWQQATATLGQDFHITRMTFKNHACCGHT FAPIDGALELRSRMGVHWQDLQAVEVATYAPALAVAGNPDPRTAAEARFSIPFVVATA LIHGSVRLSAFTPERLADADIRALMARIRLAVDPELDARFPGQRAARVGFATADGRQG KYLQPTRKGDPEQPLSDAELSDKFMELAAPVVGEARARALLGHLWALDTREHLLDL" misc_feature complement(311055..312317) /locus_tag="Alide_0280" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene 312538..313692 /locus_tag="Alide_0281" /db_xref="GeneID:10102304" CDS 312538..313692 /locus_tag="Alide_0281" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rme:Rmet_5425 butyryl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004124950.1" /db_xref="GI:319761013" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102304" /translation="MDFTLSEEHQAFADSVARFAQDKLKDGALARAHSPHYPWETAAL LAEQGLLGIAFPEEDHGQGGTLMHAVLAIEQVALVCPKSADIVQAGNFGPIRTFVEYA TPEQKQRFLPDLLAGRKLISLGMSEPDAGSAVTELKTSARQEGDGYVINGSKVFSTHS PEADLFLVYVRFGPGVGGIGSVLVERGTPGFQVGEPSSFMNGERWSQLYFDECRIPAA NVLLGPGGFKKQISGFNVERLGNSARALALGRHAFNTAREHALTRKQFGRELCEFQGI QWKFAEMAMKLEQAQLMLYRAAMEGEHGLPSAQSTAMAKLACNLAGWEVSNEALQVMG GTGFSQECLVEYCVRRTRGWMIAGGSIEILKNRIAEGVFGRTFPQRPGKG" misc_feature 312538..313671 /locus_tag="Alide_0281" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 312556..313647 /locus_tag="Alide_0281" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature order(312691..312693,312904..312906,312910..312912, 313003..313005,313009..313011,313603..313611, 313615..313617,313621..313623) /locus_tag="Alide_0281" /note="active site" /db_xref="CDD:173838" gene 313716..314690 /locus_tag="Alide_0282" /db_xref="GeneID:10102305" CDS 313716..314690 /locus_tag="Alide_0282" /inference="similar to AA sequence:KEGG:Veis_3320" /note="KEGG: vei:Veis_3320 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124951.1" /db_xref="GI:319761014" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102305" /translation="MKRSLLSLAALAACAWSIAVPAAADAAYPAKPVRIIVGYSAGGP TDAVARLVAAHLQTKLGQPFVVDNRAGAGSNIASEAVAAAAPDGYTLLVAAAPLTMNS HVYKNLKFDAVKSFVPISKLSSAPGVLAVRTDWGVGSVKEFVAAAKKEPGKFTYGTTG LGGSQHMATELFQRLAGVKLTHIPYKGASNVMTDLIAGHVDLAFMTATGAMPHLQAGK VKPLAVAGPQRLSGLPNVPTFAEAGYPAMISDSWNGLLAPAGTPEAIVKKLHAAAAEA LQMPETRTKLESQGAIVIGNSPEEFRADIQREVAHWAEQFKAIKIEMQ" sig_peptide 313716..313790 /locus_tag="Alide_0282" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.862 at residue 25" misc_feature 313812..314684 /locus_tag="Alide_0282" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 313857..314678 /locus_tag="Alide_0282" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 314687..316762 /locus_tag="Alide_0283" /db_xref="GeneID:10102306" CDS 314687..316762 /locus_tag="Alide_0283" /inference="protein motif:PFAM:PF02629" /note="PFAM: CoA-binding domain protein; KEGG: dac:Daci_1885 CoA-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="CoA-binding domain protein" /protein_id="YP_004124952.1" /db_xref="GI:319761015" /db_xref="InterPro:IPR003781" /db_xref="GeneID:10102306" /translation="MTPDNDKRLAQALLHPASVALYGASDDVDKMGGRPVQFLKRTGF AGRIYPINPRRDEIQGLKAWPSLQSLPEVPDQVFVLTPTETVIPAVRECAALGVKVVT ILASGFSESGAEGAAREGELRRIAKETGIRILGPSSLGVVNPRTGLVLTANAAFAEPD LPPGKVFVASHSGSMIGALVSRGKARGVGFAGLVSVGSEVDLNVGEICAATLDDPAIE GYLLFLESLRHGPELRAFARAAHARGKPVIAYKLGRSAAAAEMATTHTGAIAGEDDIA DAFLKDMGVARVGVLEALLETFPLARRIPLESAPKRVGVVTTTGGGAAMAVEQLGIRG VVVEPPSADALKRLEQAGLPCTPGRVLDMTLAGTKYETMKATLDILLTAPEFDLVLAV VGSSARFQPQLAVKPIVECAGGPKPLAAMLVPDAPEALAALTAAGVPCFRAPEACGDA IAAVLARRRPGPEPVLPAPGPARTLSEAEAYGVLHELGVPHAPVALRCFGEAPAPLPF AYPVVAKVCSAEIPHKTEVGGVLLNIGSDEELAAALATLRRNLDERAPKAACDEVLVQ PMQKGLSEVLVGYRVDPDAGPIVMLAAGGIWAEVAKDRSIRLAPVTVETAREMVAEVN ALKPLTGLRGKARGDLEALARTVSALSQLALKPELGIAEAEVNPLLVLPEGQGVVAVD ALVFQRTPA" misc_feature 314699..>314989 /locus_tag="Alide_0283" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 314723..316048 /locus_tag="Alide_0283" /note="acetyl coenzyme A synthetase (ADP forming), alpha domain; Region: AcCoA-syn-alpha; TIGR02717" /db_xref="CDD:131764" misc_feature 316184..>316735 /locus_tag="Alide_0283" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042" /db_xref="CDD:31244" gene 316836..317948 /locus_tag="Alide_0284" /db_xref="GeneID:10102307" CDS 316836..317948 /locus_tag="Alide_0284" /inference="protein motif:PFAM:PF01565" /note="PFAM: FAD linked oxidase domain protein; KEGG: dia:Dtpsy_0184 FAD linked oxidase domain protein" /codon_start=1 /transl_table=11 /product="fad linked oxidase domain protein" /protein_id="YP_004124953.1" /db_xref="GI:319761016" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="InterPro:IPR016166" /db_xref="GeneID:10102307" /translation="MEAALRQIIDRVRDSADRRALLRIRGGGTKDFHGPGAPAHAGEP LDMRPLAGIVSYEPSELVVTALAGTPLAELEALLAQHGQSLPFEPPRFAPGGTVGGMV AAGLSGPARASVGAVRDYVLGVEIINGKGELLRFGGQVMKNVAGYDVSRLMAGSWGQL GIITEVSLKVLPVPPAEATLRFDCGQAEALARLHAWGGQPLPLNASCWVQDGGGAGRL YVRLRGARAAVQAACRSMGGAPQDAPTVPADWQACRDQRLPWFTARAADHALWRLSVP QTAPVLALPAGVAPPLVEWHGGLRWVQAPARHGDELRALARQVGGSASCFVAAGADGT GAAALFDANDGALAIVHQRLRQAFDPAGILNPGRLV" misc_feature 316845..317942 /locus_tag="Alide_0284" /note="glycolate oxidase FAD binding subunit; Provisional; Region: glcE; PRK11282" /db_xref="CDD:183074" misc_feature 316854..317246 /locus_tag="Alide_0284" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene 317951..318724 /locus_tag="Alide_0285" /db_xref="GeneID:10102308" CDS 317951..318724 /locus_tag="Alide_0285" /inference="protein motif:PFAM:PF06912" /note="PFAM: protein of unknown function DUF1275; KEGG: dia:Dtpsy_0185 protein of unknown function DUF1275" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124954.1" /db_xref="GI:319761017" /db_xref="InterPro:IPR010699" /db_xref="GeneID:10102308" /translation="MRLLRHLTGRYRTPVANRTLGLLLAFNAGGINAGGFLVVGMYTS HMTGIVSTVGDNLVLGNMALVLGALGTLWAFMSGAGSTAIMVNWARHQHLRSTFALPL LLEAVLMLLFGLMGAITLTWRTPFAVPLTVLLLAYLMGLQNAVITKMSSAEIRTTHMT GICTDIGIELGKALYWNRGGRPAHEQVHVNHKRLRLFASLLSMFMAGGVVGAAGFKYV GFIWVVPLATVLLVLSLPPLAADFDRLGLAWRRRSSRGQ" misc_feature 318068..318559 /locus_tag="Alide_0285" /note="Protein of unknown function (DUF1275); Region: DUF1275; cl01453" /db_xref="CDD:194139" gene 318761..319999 /locus_tag="Alide_0286" /db_xref="GeneID:10102309" CDS 318761..319999 /locus_tag="Alide_0286" /inference="protein motif:PFAM:PF02754" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ajs:Ajs_0168 glycolate oxidase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124955.1" /db_xref="GI:319761018" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR012257" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="GeneID:10102309" /translation="MQTQLAPEYQGTPEGQEAEAILRKCVHCGFCTATCPTYQLLGDE LDGPRGRIYLIKQVLEGQEPTRKTQLHLDRCLTCRNCESTCPSGVQYGHLVDIGRRIV EEKVPRPRGEAAVRWALKEGLPSPLFAPAMKLGQAVRGLLPGRLRAKVPPRQQAGRWP AASHARKVLLLQGCVQPAMAPNINAATARVLDAAGIQTLVAPEAGCCGAVKFHLNDQD GGRAQMRANIDAWWPYIERGAVECIVMNASGCGVTVKEYGYMLRLDPQYAEKAARVSA LTRDLSELLPDLVPLLKDRVRPAGRAFAYHPPCTLQHGQKLRGGVERHMAALGFTLRV ARTESHLCCGAAGTYSVLNPELSYQLRDRKLGVLGAAFADEPPAAILSANMGCITHLQ SGTEIPVRHWVELLDEALLA" misc_feature 318761..319996 /locus_tag="Alide_0286" /note="glycolate oxidase iron-sulfur subunit; Provisional; Region: glcF; PRK11274" /db_xref="CDD:183069" misc_feature <318785..>319108 /locus_tag="Alide_0286" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature 319733..319936 /locus_tag="Alide_0286" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene 320062..320793 /locus_tag="Alide_0287" /db_xref="GeneID:10102310" CDS 320062..320793 /locus_tag="Alide_0287" /inference="protein motif:PFAM:PF04352" /note="PFAM: Fertility inhibition FinO-like; KEGG: dia:Dtpsy_0187 ProQ activator of osmoprotectant transporter ProP" /codon_start=1 /transl_table=11 /product="fertility inhibition fino-like protein" /protein_id="YP_004124956.1" /db_xref="GI:319761019" /db_xref="InterPro:IPR016103" /db_xref="GeneID:10102310" /translation="MNDSVNALQPSAEAAQPVQPAAPVAAVEAAGNDAAPRRTHPLLE QLAGWYPHLFGMQCLPLKRGIFHDLMAAHGEAIDKDALKLALSIHTRSTRYLNAVAQG LRRHDLQGQPVEDMAPEHVHHALLEVFRRRKPRDGEDLALKLRRRIAQAFEASGLTRE AYDALVRGRDEKANALLDEAFAEVAEQGAKAEALLRAFEASGATPEQFADMYGMDRRV VTQSLARARRLRAPAAQAAAPGEAP" misc_feature 320170..320484 /locus_tag="Alide_0287" /note="FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two component FinOP system which is responsible for repressing bacterial conjugation; the FinOP system represses the transfer (tra) operon of the F-plasmid which...; Region: FinO_conjug_rep; cl00174" /db_xref="CDD:185810" gene complement(320851..321735) /locus_tag="Alide_0288" /db_xref="GeneID:10102311" CDS complement(320851..321735) /locus_tag="Alide_0288" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0174 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124957.1" /db_xref="GI:319761020" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10102311" /translation="MHSPLPALALLFNAFVWGLSWWPFRQMQGAGLHPLWATALMYCA ILVAMLALRPGVLAQLRAHPGLWLLALSSGLNNVAFNWAITIGDVVRVILLFYLMPAW AVLLAWRILGERPTAQALARLLMAFCGVLLVLWPAEGGVRRLFAALTLADMLALLGGF MFALTNVTVRRLHAVPGQARMFAMFGGCLLLALLVANLGRSVGLVTAFPPPDATWITV AALLSLLLMAGNWALQFGAARLAAGTTAVIMLSEVVFASGSSVLLGASRLTAGTLAGG ALILLAATWSAWRPRARG" misc_feature complement(321331..321693) /locus_tag="Alide_0288" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene complement(321789..323066) /locus_tag="Alide_0289" /db_xref="GeneID:10102312" CDS complement(321789..323066) /locus_tag="Alide_0289" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0193 lysophospholipid transporter LplT" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004124958.1" /db_xref="GI:319761021" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10102312" /translation="MKRGFYTIMSAQFFSSLADNALFVTAVELLRSSGAPEWQRAALV PMFALFYVVLAPWVGAFSDSMPKGRVMFISNAIKVVGCLMMLFGSHPLLAYAVVGLGA AAYSPAKYGILTELLPASQLVKANGWIEGLTIASIILGVLLGGQLVAPHISGVLLDFD LPGVDLGIDLPAEAAILALVPVYMLAAWFNLRIPLTGVEMRPMPRNPVALLPDFWTCN RRLWRDRLGQISLSTTTLFWGVSGNLRYIVLAWSAAALGYGTTQASALVGVVAIGTAA GAVLASMRMRLEQATRVIPLGIAMGLLVILMNAIHSIWLAVPFLIVLGGLGGFLVVPM NALLQHRGHNLMGAGRSIAVQNFNEQAAILGMGVLYSLFTKLGLSAHGAIAAFGLLVA LVMLAILRWHVHNVRRYPKEMVHLRRMARRDRH" misc_feature complement(321828..323066) /locus_tag="Alide_0289" /note="lysophospholipid transporter LplT; Provisional; Region: PRK11195" /db_xref="CDD:183032" gene 323210..324304 /locus_tag="Alide_0290" /db_xref="GeneID:10102313" CDS 323210..324304 /locus_tag="Alide_0290" /EC_number="5.1.1.1" /inference="protein motif:TFAM:TIGR00492" /note="TIGRFAM: alanine racemase; KEGG: ajs:Ajs_0176 alanine racemase; PFAM: alanine racemase domain protein" /codon_start=1 /transl_table=11 /product="alanine racemase" /protein_id="YP_004124959.1" /db_xref="GI:319761022" /db_xref="GO:0008784" /db_xref="InterPro:IPR000821" /db_xref="InterPro:IPR001608" /db_xref="InterPro:IPR011079" /db_xref="InterPro:IPR020622" /db_xref="GeneID:10102313" /translation="MPRPILATIHPAAVQHNLERARRAAPDARMWAVVKANAYGHGIE RVFEGLRSADGIALLDMAEAERVRRLGWRGPVLLLEGVFEPRDLELCSRLSLWHAVHC DEQIDWLAAHKTQAPHRVFLKMNSGMNRLGFAPGRYRSAWARLNALPQVDEISFMTHF SDADGPRGIAHQVQAFHRATQDLPGERCIANSAAILRHGGEAQVRLDWVRAGIALYGS APDHPERTAVDWGLEPAMTLASRIIGVQQLQAGDTVGYGSRFTAEGPLAIGVVACGYA DGYPRHCDTGTPVLVNGVRTRTIGRVSMDMIAVDLTPVPGAGMGAEVTLWGRAANGVV LPIDEVAEAGGTVGYELMCALAPRVPVSVD" misc_feature 323216..324295 /locus_tag="Alide_0290" /note="alanine racemase; Reviewed; Region: dadX; PRK03646" /db_xref="CDD:179622" misc_feature 323219..324292 /locus_tag="Alide_0290" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases; Region: PLPDE_III_AR_proteobact; cd06827" /db_xref="CDD:143500" misc_feature order(323306..323308,323312..323314,323324..323326, 323444..323446,323576..323578,323597..323599, 323678..323680,323684..323686,323780..323788, 323837..323848,324254..324256) /locus_tag="Alide_0290" /note="active site" /db_xref="CDD:143500" misc_feature order(323306..323308,323312..323314,323324..323326, 323444..323446,323684..323686,323780..323785, 323837..323839,323843..323848,324254..324256) /locus_tag="Alide_0290" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature order(323312..323314,323324..323326,323597..323599, 323684..323686,324254..324256) /locus_tag="Alide_0290" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature order(323312..323314,323975..323977) /locus_tag="Alide_0290" /note="catalytic residues [active]" /db_xref="CDD:143500" misc_feature order(323936..323938,323945..323947,323963..323968, 323972..323980,324017..324019,324032..324034, 324050..324052,324116..324118,324122..324124, 324248..324250,324254..324259,324272..324274, 324281..324283) /locus_tag="Alide_0290" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143500" gene 324523..325542 /locus_tag="Alide_0291" /db_xref="GeneID:10102314" CDS 324523..325542 /locus_tag="Alide_0291" /EC_number="1.11.1.5" /inference="protein motif:PRIAM:1.11.1.5" /note="KEGG: dia:Dtpsy_0196 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase" /codon_start=1 /transl_table=11 /product="cytochrome-c peroxidase" /protein_id="YP_004124960.1" /db_xref="GI:319761023" /db_xref="InterPro:IPR004852" /db_xref="InterPro:IPR009056" /db_xref="GeneID:10102314" /translation="MKQKSSPVRHAARFMLGAVSMAALLMAAPVRAQEPVQPIAGPKV TSPAKVELGKKLWFDPRLSRSGFISCNSCHNLSMGGSDNLKTSIGDKWQKGPINSPTV LNSSLNLAQFWDGRAKDLKEQAGGPIANPGEMAFTHGLAVDMLRSIPQYVAEFKKVFG HDKLTIDEVTAAIAAFEETLVTPNARFDKWLKGDKKAINAQELRGYQLFKSSGCVACH NGPNLGGNSFQKMGLVEPYKTDNPAEGRSAVTGNDAERFNFKVPTLRNVELTYPYFHD GAADTLSQAVDTMGRLQLGKKFTGQENADIVAFLKTLTGDQPKIAMPILPPSSDKTKR PQPFE" sig_peptide 324523..324621 /locus_tag="Alide_0291" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 33" misc_feature 324586..325479 /locus_tag="Alide_0291" /note="Cytochrome c peroxidase [Inorganic ion transport and metabolism]; Region: MauG; COG1858" /db_xref="CDD:32043" gene complement(325622..326236) /locus_tag="Alide_0292" /db_xref="GeneID:10102315" CDS complement(325622..326236) /locus_tag="Alide_0292" /inference="protein motif:PFAM:PF02798" /note="PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_0197 glutathione S-transferase domain protein" /codon_start=1 /transl_table=11 /product="glutathione s-transferase domain protein" /protein_id="YP_004124961.1" /db_xref="GI:319761024" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="InterPro:IPR017933" /db_xref="GeneID:10102315" /translation="MTTLTLYYAPGTCAQAVRIALEEAQAPYTPVRMDFASQQQRSPE YLAINPKGRVPALVTEHGVLTETPALLAYVAQRFVQAGLAPADAFGFARMQEFNSYLA STVHVAHAHRPRASRWADEPEAQAAMQRKVPANMTECFDVIERHYLGDGPWMLGEQYT VADGYLFTVAGWLKSDGVDIARFPKVHAHSQRMAARPAVQRALG" misc_feature complement(325631..326227) /locus_tag="Alide_0292" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature complement(326003..326227) /locus_tag="Alide_0292" /note="GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_N_Beta; cd03057" /db_xref="CDD:48606" misc_feature complement(order(326009..326011,326021..326023, 326168..326173,326183..326185,326189..326191, 326204..326209)) /locus_tag="Alide_0292" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature complement(order(326036..326041,326075..326080, 326198..326200)) /locus_tag="Alide_0292" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48606" misc_feature complement(order(326009..326011,326018..326020, 326033..326035,326039..326044,326078..326080)) /locus_tag="Alide_0292" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature complement(325628..325972) /locus_tag="Alide_0292" /note="GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_C_Beta; cd03188" /db_xref="CDD:48115" misc_feature complement(order(325832..325834,325844..325846, 325853..325855,325889..325891,325916..325918, 325928..325930,325940..325942,325949..325951, 325958..325963,325970..325972)) /locus_tag="Alide_0292" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature complement(order(325631..325633,325643..325645, 325649..325651,325721..325723,325733..325735, 325754..325756,325919..325921,325964..325966)) /locus_tag="Alide_0292" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature complement(order(325712..325714,325721..325723, 325730..325732,325898..325900,325904..325909, 325916..325921,325931..325933)) /locus_tag="Alide_0292" /note="substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48115" gene 326367..327749 /locus_tag="Alide_0293" /db_xref="GeneID:10102316" CDS 326367..327749 /locus_tag="Alide_0293" /inference="protein motif:TFAM:TIGR00416" /note="KEGG: dia:Dtpsy_0199 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="DNA repair protein rada" /protein_id="YP_004124962.1" /db_xref="GI:319761025" /db_xref="GO:0003684" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004504" /db_xref="GeneID:10102316" /translation="MAKDKTLYSCSECGASSPRWLGKCPGCGAWNTLIETVPDAGPGK NRLSGAGQYAGLAQAQSVMPLAAIEATEVARTPSGIEELDRVLGGGVVEGGVVLIGGD PGIGKSTLLLQAMDALQRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQLE KILATIEATQPAVAVIDSIQTIYSDQLTSAPGSVAQVRECAAHLTRLAKATGIAVVLV GHVTKEGALAGPRVLEHMVDTVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERG LKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPLLVEIQALVDGGGPSPRRLSVGLER DRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKG FIAFGEVGLAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIPGLEIHAVERVD EAMAAVRGLG" misc_feature 326367..327743 /locus_tag="Alide_0293" /note="DNA repair protein RadA; Provisional; Region: PRK11823" /db_xref="CDD:183326" misc_feature 326388..327515 /locus_tag="Alide_0293" /note="Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121" /db_xref="CDD:29987" misc_feature 326667..326690 /locus_tag="Alide_0293" /note="Walker A motif/ATP binding site; other site" /db_xref="CDD:29987" misc_feature order(326670..326672,326682..326690,326745..326747, 326751..326753,326895..326900) /locus_tag="Alide_0293" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29987" misc_feature 326886..326897 /locus_tag="Alide_0293" /note="Walker B motif; other site" /db_xref="CDD:29987" misc_feature <327474..327719 /locus_tag="Alide_0293" /note="Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362" /db_xref="CDD:191262" gene complement(327753..328739) /locus_tag="Alide_0294" /db_xref="GeneID:10102317" CDS complement(327753..328739) /locus_tag="Alide_0294" /inference="similar to AA sequence:KEGG:Rmet_1769" /note="KEGG: rme:Rmet_1769 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124963.1" /db_xref="GI:319761026" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102317" /translation="MTTSSRRHAVLAGALAALALACGPAAQAQEGDFTRIVVGFAPGG AADSLARIYAEQLRQDGLGNVLVENKPGASSRLALDYVKKAPADGKTVFIGPSPMFTI FPLTYKKLSYDPDKDLVPVALLTDVPTVIATAVNAPYKTMDQYVQWLKQHPAQGSLGL ASIGSAGHLGAFALSKELGLSVTPTPYRGATPMLVDVVSGNVSMGWDAVASMMPLYRG NKLHFLGVSGTRRIKALPEVPTAFEQGYKQFEYATSWYGAYVSGATPEPVKARLQEAF IKASRNPATAARLEDLGLEVVGKSGAEARERMLKERAAWSPIVKASGFEAQD" sig_peptide complement(328653..328739) /locus_tag="Alide_0294" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.984 at residue 29" misc_feature complement(327771..328592) /locus_tag="Alide_0294" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(328764..330188) /locus_tag="Alide_0295" /db_xref="GeneID:10102318" CDS complement(328764..330188) /locus_tag="Alide_0295" /inference="protein motif:PFAM:PF01425" /note="PFAM: Amidase; KEGG: reh:H16_A1882 Asp-tRNA Asn / Glu-tRNA Gln amidotransferase A subunit or related amidase" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_004124964.1" /db_xref="GI:319761027" /db_xref="GO:0016491" /db_xref="InterPro:IPR000120" /db_xref="GeneID:10102318" /translation="MPPELWKWPAAELARAIRGRHISPVEATTAILAHMAAQQPRLNC FITVCADQALAQARAAEGALMRGDALGALHGVPFSVKDIVNTRDVATTFGALPLRGNV PAEDAVSVARLRRAGAILIGKTTTPEFGSKGFTDAPLFGATPNAWSPRHTCGGSSGGA AVAVAAGMAPLAIATDGGGSTRIPAACNGVVGIKQTIGVVPHSQALDLFGNQTYVTPT ARTVLDTALMLDAMAGPHPCDPWSQGRAAVDHVQAVRAARDLRGKRFRYNVAPHGRRV SAQVEQAFRQALLHIESLGGSVEPFEAQLDIEPLWRTVNHTVWRARFAPLVQQHGDAL SATFRRQIESAQDYSALDYQNAMFARSRLFHTVQGWLDDADFLVMPTLTRTALPLGTD IFDRMEIDGAEMGDIRANWYPWTMPFNMTGHPAVSIPCGFDSERLPVGLQIVAPMFCD AQMLQAAACLEASFNLLQAWPDMS" misc_feature complement(328770..330161) /locus_tag="Alide_0295" /note="putative amidase; Provisional; Region: PRK06169" /db_xref="CDD:180437" misc_feature complement(328827..330113) /locus_tag="Alide_0295" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene 330354..330770 /locus_tag="Alide_0296" /db_xref="GeneID:10102319" CDS 330354..330770 /locus_tag="Alide_0296" /inference="similar to AA sequence:KEGG:Ajs_0181" /note="KEGG: ajs:Ajs_0181 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124965.1" /db_xref="GI:319761028" /db_xref="GeneID:10102319" /translation="MNLRKIFIPLGIVALAIAGYRAYGLQGILTVSGGLVMWGLLHYT RLMNVMQKARNNPIGYVGSAVMLNARLKSGVNLMHVVAMTRALGEQLSAEGQEPEVYR WTDGTQSHVTCEFVNGRLVRWNLVRPAPGEDPAGES" sig_peptide 330354..330422 /locus_tag="Alide_0296" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.621) with cleavage site probability 0.518 at residue 23" gene 330815..331753 /locus_tag="Alide_0297" /db_xref="GeneID:10102320" CDS 330815..331753 /locus_tag="Alide_0297" /inference="protein motif:TFAM:TIGR01122" /note="KEGG: ajs:Ajs_0182 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV" /codon_start=1 /transl_table=11 /product="branched-chain amino acid aminotransferase" /protein_id="YP_004124966.1" /db_xref="GI:319761029" /db_xref="GO:0004084" /db_xref="InterPro:IPR001544" /db_xref="InterPro:IPR005785" /db_xref="InterPro:IPR018300" /db_xref="GeneID:10102320" /translation="MSPVVPSMADRDGKIWMDGQMVDWRDAKIHVLTHSLHYGCGAFE GVRAYKTEQGTAIFRLQEHTDRLFNSAKILRMKLPFTKEEVNEAQRAVVRANKLESCY LRPLTWIGSEKLGVSPKGNKIHMIVAAWAWGAYLGEEGMARGIRVKTSSFTRHHVNIT MTQAKASSNYTNSILANMEATDDGYDEALLLDSAGFVSEGSGENVFIIKDGVVYTPDL SAGALNGITRNTVLHICKDLGLELVQKRITRDEVYIADEAFFSGTAAEITPIRELDRV QIGGGSRGPLTEKIQTAFFDIVNGRNPKYAHWLTKV" misc_feature 330857..331696 /locus_tag="Alide_0297" /note="branched-chain amino acid aminotransferase; Provisional; Region: PRK12479" /db_xref="CDD:183549" misc_feature 330896..331714 /locus_tag="Alide_0297" /note="BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-...; Region: BCAT_beta_family; cd01557" /db_xref="CDD:29568" misc_feature order(330896..330910,330917..330931,330935..330937, 330941..330943,331031..331033,331124..331126, 331130..331132,331148..331156,331166..331168, 331190..331192,331313..331315,331328..331330, 331334..331336,331346..331348,331388..331390) /locus_tag="Alide_0297" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29568" misc_feature order(330926..330928,330941..330943,331010..331012, 331160..331162,331307..331309,331322..331324, 331409..331411,331490..331495,331601..331603) /locus_tag="Alide_0297" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:29568" misc_feature 331307..331309 /locus_tag="Alide_0297" /note="catalytic residue [active]" /db_xref="CDD:29568" gene 331761..331967 /locus_tag="Alide_0298" /db_xref="GeneID:10102321" CDS 331761..331967 /locus_tag="Alide_0298" /inference="protein motif:PFAM:PF10276" /note="PFAM: Zinc finger, CHCC-type; KEGG: ajs:Ajs_0183 hypothetical protein" /codon_start=1 /transl_table=11 /product="zinc finger, chcc-type" /protein_id="YP_004124967.1" /db_xref="GI:319761030" /db_xref="InterPro:IPR019401" /db_xref="GeneID:10102321" /translation="MPQAIVELLAKDLDGNGGVHCPNPKADMKLWNGHPRVFLEIAHQ GQAQCPYCGTLYRLKAGEIVHAGH" misc_feature <331815..331934 /locus_tag="Alide_0298" /note="Zinc-finger domain; Region: zf-CHCC; cl01821" /db_xref="CDD:154607" gene 332042..333394 /locus_tag="Alide_0299" /db_xref="GeneID:10102322" CDS 332042..333394 /locus_tag="Alide_0299" /inference="protein motif:PFAM:PF04932" /note="PFAM: O-antigen polymerase; KEGG: ajs:Ajs_0184 O-antigen polymerase" /codon_start=1 /transl_table=11 /product="o-antigen polymerase" /protein_id="YP_004124968.1" /db_xref="GI:319761031" /db_xref="InterPro:IPR007016" /db_xref="GeneID:10102322" /translation="MTTLESFLGAPPWPRQLATAALFLLPALALTVQSGYSYGAALLL IGALCSLRRWPFAAQDRWTWGFAVAMGGMGVFWWLLANPQESLGGTWDRPSKFALGIA CLLFVSPTAPRPRAQFWGLLAGCLGAGAVALWQVHVEGAPRASGFPSGKTNAIQWGNL ALLLGTMLAVQAITLREHLGRAALALAGLAALMALNASVLSLSRGGWLALLLASPVGL YLLWRFDRRALWRMLGGAAVVLAVLGAANHAVLAERWNVMEKEMLVYDAEREAGNSVG QRLEHWRFAWEVGLEKPIFGWGMRGYLEEKEKRVAAGQYEPSIVEYIYTHNEPLDMFV KAGIVGVAWLLLFYAVPLCMFWPTRARVAAYARQGAEVRAQMLALRLGGVCIPLLYAG FGMTQVFFAHNSGIMFYLFMTMLTWAAVLGMDAQYAGGAGASSSSLPRRGPSSRQSRA " misc_feature 332636..333067 /locus_tag="Alide_0299" /note="O-Antigen ligase; Region: Wzy_C; cl04850" /db_xref="CDD:194980" misc_feature <332861..333301 /locus_tag="Alide_0299" /note="Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]; Region: RfaL; COG3307" /db_xref="CDD:33116" gene 333387..334502 /locus_tag="Alide_0300" /db_xref="GeneID:10102323" CDS 333387..334502 /locus_tag="Alide_0300" /inference="protein motif:PFAM:PF00534" /note="PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_0185 glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_004124969.1" /db_xref="GI:319761032" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10102323" /translation="MPEIARRPRVLHFVTGGFSGATQVAVDLVRAHALSGRCEALLVL RRKRHTRGERVQALRDEGLAVETVAGWAHAATVWQLAAVCRRWRPDVLVAHGFSEHLW GRYAGLVAGVPRLVQVEHNSRERYTAWRLRQALWLAGRTEAIVGVSEGVRQSLLARGF PPGKTVAIPNGIPLAPYDCADGHDWAGRVPGIVMAARFARQKDHATLLRAVALLRQQG LTPPVKLAGGGKAGARRAARRLCTELGLDGQVEFLGHCKDMPGLLMGHRICVLSTHYE GMPLSLIEGMAAGCAVVGSRVVGVQEVIEDGRNGLLAGHADPRSLADALERLLTRDDE ARRMARAARDDALRLYGLQTMTARYEDLLLRGLEHPR" misc_feature 333411..334376 /locus_tag="Alide_0300" /note="This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core; Region: GT1_WabH_like; cd03811" /db_xref="CDD:99982" misc_feature 333414..334490 /locus_tag="Alide_0300" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature order(333444..333446,333969..333977,334161..334163, 334227..334229) /locus_tag="Alide_0300" /note="putative ADP-binding pocket [chemical binding]; other site" /db_xref="CDD:99982" gene 334499..335545 /locus_tag="Alide_0301" /db_xref="GeneID:10102324" CDS 334499..335545 /locus_tag="Alide_0301" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0186 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_004124970.1" /db_xref="GI:319761033" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10102324" /translation="MKDADAPWLSILVPVYDVQDYLAECIGSVMEQLAQLPDGGAGVE VLVLDDASTDGSRALMDALAARWPGRLALMHHARNQGLSAARNTMIGAARGEYLWFLD SDDKLLPGALAGLQAAVRRHAPDAVLCDFAVWRERPRLKHRLRGEAHRATFAGPAGGP FHDRAALLAGLFMTGQLHAWSKITRRALWGADLRFPPGRYFEDMATMPLALLRARSHC YLPEPWVAYRQRGSSILATMTLPKALDQSQALGAFAQALRAAEAAGDMPAHADLHFAL AHQCARSLTGAARFLERAALPVAEREAAAWRLRDDFAAASPLAAEALLRAYARRGWWL RAHRLRRAWSTVSA" misc_feature 334523..>335155 /locus_tag="Alide_0301" /note="Predicted glycosyltransferases [General function prediction only]; Region: COG1216" /db_xref="CDD:31409" misc_feature 334529..>334813 /locus_tag="Alide_0301" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761" /db_xref="CDD:132997" misc_feature order(334538..334540,334544..334546,334640..334642, 334802..334804,334808..334810) /locus_tag="Alide_0301" /note="active site" /db_xref="CDD:132997" gene 335542..336516 /locus_tag="Alide_0302" /db_xref="GeneID:10102325" CDS 335542..336516 /locus_tag="Alide_0302" /inference="similar to AA sequence:KEGG:Ajs_0187" /note="KEGG: ajs:Ajs_0187 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124971.1" /db_xref="GI:319761034" /db_xref="GeneID:10102325" /translation="MTSATPSLRWKHRGELWLARWLRRWFRLRPLWLEGAPAPEFTLY STGAARAPAAAIPRIIWSYWQGGTPPLLVRRCFDNWRRLHPHFEIRILDERGALQYLP AIPRALDGASAAKRADWIRLELLRRHGGIWLDASTILTRPLDWVLAEQARTGADFVGY YLQQYTSAPDRPVVENWFMAAPPASPFIEDLQREFTGEVIVRSGEEYIAHLRAQGLYE RALQRIDMPAYLSMHLALQVVLLRGGAYRLCLARAEAGPYLYHVLGRWRRTGLKLRLL FARVCGPLPPLIKLRSPDRRRLDDYLARGLYLPESVAGRWLMGDEVAR" misc_feature 335749..335991 /locus_tag="Alide_0302" /note="Glycosyltransferase sugar-binding region containing DXD motif; Region: Gly_transf_sug; pfam04488" /db_xref="CDD:191003" gene complement(336585..337649) /locus_tag="Alide_0303" /db_xref="GeneID:10102326" CDS complement(336585..337649) /locus_tag="Alide_0303" /inference="protein motif:PFAM:PF03060" /note="PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase, NPD" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase npd" /protein_id="YP_004124972.1" /db_xref="GI:319761035" /db_xref="GO:0018580" /db_xref="InterPro:IPR004136" /db_xref="GeneID:10102326" /translation="MTTTLLQRLNISLPIIQGPMTGSDTPQLAAAVSQAGGLGMLGCG MRSPEAMAQAAAAVRAATGKPFGMNLFVLETPRPDAAEVAAAMDRLAPLYARFGLPPE APARWCEDFAAQFDALIAARPAVASFTFGILSAAQVRRIQSEAGSFVIGTATTPAEAL AWQEVGADAVVASGMEAGGHRGTFQGDWEGSLIGTLPLVPTCVDTLKIPVIAAGGIMD GRGIAAAQALGAQAVQMGTAFLACPESSIVPAQRAAMAAAQATDTRLTRIFSGRPARG ILNQAMRSLQPQEADIPAYPVQNALMGPIRRAAAQAGDAGHIALWAGQGVGAARALPA GELVALLAQEWRAALQRLQA" misc_feature complement(336618..337643) /locus_tag="Alide_0303" /note="Nitronate monooxygenase; Region: NMO; pfam03060" /db_xref="CDD:145943" misc_feature complement(336813..337619) /locus_tag="Alide_0303" /note="2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin...; Region: NPD_like; cd04730" /db_xref="CDD:73392" misc_feature complement(order(336939..336950,337005..337013, 337116..337121,337131..337133,337194..337196, 337263..337265,337437..337439,337590..337595)) /locus_tag="Alide_0303" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(337110..337115) /locus_tag="Alide_0303" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(337110..337112) /locus_tag="Alide_0303" /note="putative catalytic residue [active]" /db_xref="CDD:73392" gene complement(337646..338512) /locus_tag="Alide_0304" /db_xref="GeneID:10102327" CDS complement(337646..338512) /locus_tag="Alide_0304" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0189 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124973.1" /db_xref="GI:319761036" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102327" /translation="MDLVALDIFRTVAAEGSVTRAAERLGRAQSNATTRVQQLEEDLG VPLFLREGRRMRLTPEGETLLAYADRLLALAEEARQALHPGAPTGRLRIGAMESTAAA RLPGPLARLHAQWPALSLELRTAPSRQLADQVLAHQLDCALVAWPPPGLEADAPIERT PVFAESLLLALPASHPPAATPADLRVHLLAAFAQGCTYRRIGEDWMRQGGAPVEVLEL ASYPAILACVAAGRCAGVVPQSVLQLLRTPPPLRWVPLGTCDTMLLHRPGYATPALAA LQSALLSHQDAP" misc_feature complement(338327..338506) /locus_tag="Alide_0304" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(337697..338245) /locus_tag="Alide_0304" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(337823..337828,337832..337837, 337853..337870,338141..338161,338165..338167, 338177..338179,338186..338191,338195..338200)) /locus_tag="Alide_0304" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 338568..339797 /locus_tag="Alide_0305" /db_xref="GeneID:10102328" CDS 338568..339797 /locus_tag="Alide_0305" /inference="similar to AA sequence:KEGG:Dtpsy_0209" /note="KEGG: dia:Dtpsy_0209 protein of unknown function DUF1228" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124974.1" /db_xref="GI:319761037" /db_xref="InterPro:IPR020726" /db_xref="GeneID:10102328" /translation="MRATPSWSEQPRAVTWAGMLALAVAMGVGRFAFTPLLPMMLHDG VLTLAEGSWLATANYVGYLAGALACMALPWVAPAVYERWHPARLARAGLVATVLLTVA MALPLPGAWPLLRFAAGVASAFVLLNVAAWCMVRLTALGRPSMGGLVFCGPGVGIALT GLAASAMVAAQWRASTGWVVCGLLSVLLCAVVWPVVRGRAAQARAGAPHPHAPARAPG GGTVLARGVHALAYGLAGLGYIVTATFLPVIARAALPAGSLWPDLFWPMFGVGVTVGA ALSTRANAAWDRRWLLCATYGMQALGIALGLWWPTPAGFALSSCLVGLPFTAITFYGL QEARRLWPQSADSFASLITAVYGLGQIMGPPMVAWLLARGGQAQGFAQGLALAAGALV VGAAMYAASAWRWPLVR" misc_feature 338634..338909 /locus_tag="Alide_0305" /note="Protein of unknown function (DUF1228); Region: DUF1228; pfam06779" /db_xref="CDD:115437" gene complement(339801..340520) /locus_tag="Alide_0306" /db_xref="GeneID:10102329" CDS complement(339801..340520) /locus_tag="Alide_0306" /inference="protein motif:PFAM:PF03473" /note="PFAM: MOSC domain containing protein; KEGG: dia:Dtpsy_0210 MOSC domain containing protein" /codon_start=1 /transl_table=11 /product="mosc domain containing protein" /protein_id="YP_004124975.1" /db_xref="GI:319761038" /db_xref="GO:0003824" /db_xref="GO:0030151" /db_xref="GO:0030170" /db_xref="InterPro:IPR005302" /db_xref="GeneID:10102329" /translation="MNATPPQPLGRLRAVLTGRALPYTRPGSRSAIAKQARGGPVGAG PLGLDGDEQGDPRVHGGPDKAVHCYAWAQYAPWRQELAGNAAAQALLEQPGAFGENFS LDDLQESQVCIADQWQIGSARFEVSQGRQPCWKLNDRFGVPDMALRVQSSLRTGWYLR VLQGGQVQAGDQVWLLARPYPEWPITRLLRAIAERDCTPATLRQILALPLPPSWHKLF SCRLENASAEDWTSRLVGRQP" misc_feature complement(339846..340490) /locus_tag="Alide_0306" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2258" /db_xref="CDD:32439" misc_feature complement(340002..340385) /locus_tag="Alide_0306" /note="MOSC domain; Region: MOSC; pfam03473" /db_xref="CDD:146227" gene complement(340517..341077) /locus_tag="Alide_0307" /db_xref="GeneID:10102330" CDS complement(340517..341077) /locus_tag="Alide_0307" /inference="protein motif:PFAM:PF00578" /note="PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dia:Dtpsy_0211 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen" /protein_id="YP_004124976.1" /db_xref="GI:319761039" /db_xref="GO:0016209" /db_xref="GO:0016491" /db_xref="InterPro:IPR000866" /db_xref="GeneID:10102330" /translation="MNGTYHPPAPPLQVAQWFNTPQPLTLKALRGRVVVLHAFQMLCP GCVEHGIPQARRVHEAFPQDRLVVIGLHTVFEHHDVQGGAAALQAFMHEYRLRFPIGL DQPDPQRTIPRTMHSLALQGTPSLVVLDPQGRVRLHHFGHLDDLRLGTLLGQLLAEPV PAAATPAQAAAGCDDNGCPRPDMPPP" misc_feature complement(340655..341032) /locus_tag="Alide_0307" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:193797" gene complement(341096..341590) /locus_tag="Alide_0308" /db_xref="GeneID:10102331" CDS complement(341096..341590) /locus_tag="Alide_0308" /inference="protein motif:PFAM:PF08327" /note="PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: oca:OCAR_5014 activator of HSP90 ATPase 1 family protein" /codon_start=1 /transl_table=11 /product="activator of hsp90 atpase 1 family protein" /protein_id="YP_004124977.1" /db_xref="GI:319761040" /db_xref="InterPro:IPR013538" /db_xref="GeneID:10102331" /translation="MSTADIGTLQRTATGFEGRLTRRLDHGADAVWRMLTDPQAMAQW LAPGNIELCTGGAVRIDFVDSGIVIDSRVTAFEAQRVLAYSWSSGNEPERPMRWELAP AGEGTALTLTLQIPAGEDAAKACAGFEGHLDMLAAALEGVPIKFPFERFLQARSAYNA QLAG" misc_feature complement(341117..341572) /locus_tag="Alide_0308" /note="Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; Region: SRPBCC_CalC_Aha1-like_6; cd08899" /db_xref="CDD:176908" misc_feature complement(order(341186..341188,341195..341203, 341207..341233,341243..341245,341249..341251, 341255..341257,341261..341263,341291..341293, 341297..341299,341303..341308,341336..341341, 341345..341347,341363..341365,341372..341374, 341378..341383,341387..341389,341405..341407, 341411..341413,341417..341419,341423..341425, 341447..341449,341468..341470,341483..341488, 341492..341500,341525..341527,341531..341533, 341537..341539)) /locus_tag="Alide_0308" /note="putative hydrophobic ligand binding site [chemical binding]; other site" /db_xref="CDD:176908" gene complement(341690..342151) /locus_tag="Alide_0309" /db_xref="GeneID:10102332" CDS complement(341690..342151) /locus_tag="Alide_0309" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC domain protein dehydratase; KEGG: dac:Daci_0013 dehydratase" /codon_start=1 /transl_table=11 /product="maoc domain protein dehydratase" /protein_id="YP_004124978.1" /db_xref="GI:319761041" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10102332" /translation="MIKHQMCPQRYFEDFELGEQFLLPSRTMTDALFAAFQLASGDNH PVHYDVEYCRAHGMPHMLAHGYQVVIQTAAGAGLFPHMVEESLKGFLEQGSRFLNPVF VGDTLYCTLTVSELRPGNTTGVITLGTEVKNQKGEVVMDGFQKYLLRKRRP" misc_feature complement(341726..342097) /locus_tag="Alide_0309" /note="(R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel...; Region: R_hydratase_like; cd03441" /db_xref="CDD:48036" misc_feature complement(order(341954..341959,341966..341968, 342011..342013,342020..342022,342026..342028, 342041..342043)) /locus_tag="Alide_0309" /note="active site" /db_xref="CDD:48036" misc_feature complement(order(341957..341959,342011..342013, 342020..342022,342026..342028)) /locus_tag="Alide_0309" /note="catalytic site [active]" /db_xref="CDD:48036" gene complement(342173..343144) /locus_tag="Alide_0310" /db_xref="GeneID:10102333" CDS complement(342173..343144) /locus_tag="Alide_0310" /inference="similar to AA sequence:KEGG:Daci_0012" /note="KEGG: dac:Daci_0012 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124979.1" /db_xref="GI:319761042" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102333" /translation="MMTRRSIHTAIVGALALVSAAAHAQSYPARPVKLIVPYAAGGPT DTFARALADAWGKKLGQVLVVENRTGAGTLVGTDAVAKAQPDGYTILLTTVAHAVNPS IHDKMPYRTVEDFAPVGMAAKAPLVIVVNKNFPAQNLQEFIGYIKDHPGKVNYGSAGV GSAPHLGVELLNYMTGSKTEHVPYRGSAPAMQDVIGGHLAFMMDSAPTGLAQVKAGTV RLIATTMGQRLPQTPDTPAVAEVVPKYEAYTWNAVFAPAQTPAPVIAKLNTSLKEALQ DPGLQKQAYDMGLVLEKNPQPQALAAFLGGELAKWGQVAKAAKMTAN" sig_peptide complement(343070..343144) /locus_tag="Alide_0310" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" misc_feature complement(342188..343072) /locus_tag="Alide_0310" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(342191..343003) /locus_tag="Alide_0310" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 343298..344227 /locus_tag="Alide_0311" /db_xref="GeneID:10102334" CDS 343298..344227 /locus_tag="Alide_0311" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_0011 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004124980.1" /db_xref="GI:319761043" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102334" /translation="MRYELTDLKVFLAIAAARSLSGGAADMHLTAPSASYRLKNLEQA LGTALFERTSKGMQLTPAGLTVRRYAEAILGNVERLGAEMQRHTDGVVGHIRVFANSS TLNGLAPALSRFLAAYPNVNVELEEHLSATVVKAVQDDAADIGLAAGDIDFGGLTAIP YARDELVFVTPPGHPLAEFPIVPLDMALAHDLVGIGKKSSNFVFLEAMANKLGVAPRV RVHAPSFADVLACVKEGVGISLVPYSIAAAFIQSGQVQKVRVDEPWAQRQQCIVLKSP QSLLPHEQAFVSYVVKTNASALADAAAPAIRGS" misc_feature 343307..344167 /locus_tag="Alide_0311" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 343310..343486 /locus_tag="Alide_0311" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 343577..344164 /locus_tag="Alide_0311" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(343619..343624,343628..343633,343640..343642, 343652..343654,343658..343678,343952..343969, 343985..343990,343994..343999) /locus_tag="Alide_0311" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 344352..345518 /locus_tag="Alide_0312" /db_xref="GeneID:10102335" CDS 344352..345518 /locus_tag="Alide_0312" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_0010 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004124981.1" /db_xref="GI:319761044" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="InterPro:IPR018483" /db_xref="GeneID:10102335" /translation="MTTPAASTPPTRPLQGITVLALEHAVAAPFASRQLADLGARVIK IERPGDGDFARGYDSTVMGQSSFFVWCNRGKESLALDLKQPGSMPVLDRLLERCDVFI QNLAPGAAARMGLDYDSLREKYPRLIVCVISGYGEGGPYSDKKAYDLLVQAASGLISV TGTPDAPARTGISIADISAGMYAYSGILSALLQRGHTGQGMRVEVSMLEALTEWMSYP LNFSHYGGSAPVRSGLTHPTIAPYGQYRAGDGKSVIFGLQNDREWADFCRAVLQRPGM VDDPRFASNLLRVSNRAELDAILEECFDSLTREQLLQRLDEGGIANAPLAEPDEVWTH PQFQARRRWREVATPQGAIQALLPPATLSGTEAAMGSVPALGEHTDAILKELGF" misc_feature 344391..345515 /locus_tag="Alide_0312" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(345536..346747) /locus_tag="Alide_0313" /db_xref="GeneID:10102336" CDS complement(345536..346747) /locus_tag="Alide_0313" /inference="protein motif:PFAM:PF02518" /note="KEGG: dia:Dtpsy_0212 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004124982.1" /db_xref="GI:319761045" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:10102336" /translation="MSLSLFSPFSRRLYLRIWLAVVGGVLVFAFAVGLAWRWAAEQNQ HQLPTRGIVITDAQGRTLVDGTGIRQRLDPGEGIHYRIEADDGAVYEMRLSPRTPRMR PDEHGPAAWFRPPLGFLWMLALVGIAVTVGVFPIIRRLLQRLEQLQRSVQRFGEGDLS VRVAEQGHDEVADLARQFNAAAARIETLVQSHKSLLANASHELRSPLTRIRMGLELMR GGAPSPASRAEIERNIAELDQLVDEILLASRLDAGAADVGTVEPVDLVGLAVEEGVRV DAELQVGDGAPVEVPAVSKLLRRAVRNLLENARRYSQGAITLAVTREGPSAVLRVCDH GPGVPPAQRERIFEPFYRLPGASERSGGVGLGLALVRSIAQRHGGSVHCEDRPDGAAG ACFVLSLPATR" misc_feature complement(346178..>346288) /locus_tag="Alide_0313" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(346001..346180) /locus_tag="Alide_0313" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(346016..346018,346028..346030, 346037..346039,346049..346051,346058..346060, 346109..346111,346118..346120,346130..346132, 346139..346141,346151..346153,346163..346165)) /locus_tag="Alide_0313" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(346145..346147) /locus_tag="Alide_0313" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(345551..345859) /locus_tag="Alide_0313" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(345563..345565,345569..345574, 345593..345595,345599..345601,345647..345658, 345734..345739,345743..345745,345749..345751, 345755..345757,345818..345820,345827..345829, 345839..345841)) /locus_tag="Alide_0313" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(345827..345829) /locus_tag="Alide_0313" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(345650..345652,345656..345658, 345737..345739,345743..345745)) /locus_tag="Alide_0313" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(346757..347467) /locus_tag="Alide_0314" /db_xref="GeneID:10102337" CDS complement(346757..347467) /locus_tag="Alide_0314" /inference="protein motif:PFAM:PF00072" /note="KEGG: ajs:Ajs_0194 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004124983.1" /db_xref="GI:319761046" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10102337" /translation="MNSQLLMIEDDHRLAQMVGEYLGQSGLQVTHMADGTSGLAQLQG SELPDLVILDLMLPDMDGLEVCRRIRALPGAAAQVPVLMLTAKGDPMDRVIGLEIGAD DYLPKPFEPRELLARIRAILRRREAGAQPPANHLLRFGSLEIDRDARTITVGGEPAEL TSYQFDLLVTMAERAGRVLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKNP RRILTVRGVGYVFAKQQD" misc_feature complement(346772..347455) /locus_tag="Alide_0314" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature complement(347135..347452) /locus_tag="Alide_0314" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(347144..347149,347156..347158, 347213..347215,347282..347284,347306..347308, 347438..347443)) /locus_tag="Alide_0314" /note="active site" /db_xref="CDD:29071" misc_feature complement(347306..347308) /locus_tag="Alide_0314" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(347282..347290,347294..347299)) /locus_tag="Alide_0314" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(347141..347149) /locus_tag="Alide_0314" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(346775..347059) /locus_tag="Alide_0314" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(346784..346786,346799..346801, 346835..346840,346862..346864,346871..346873, 346925..346930,346985..346987)) /locus_tag="Alide_0314" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene complement(347563..348921) /locus_tag="Alide_0315" /db_xref="GeneID:10102338" CDS complement(347563..348921) /locus_tag="Alide_0315" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0214 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004124984.1" /db_xref="GI:319761047" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10102338" /translation="MVAVRIIPRMPDSSSAAPARRSWRQAWLVYLEPASLRMLALGFS AGLPLLLVLGTLSFRLREAGIDRTTIGYLSWVGLAYAFKWVWSPLVDRLPLPLLTRAL GRRRSWLLLAQGMVMAGLVGMALVDPRATLGPMVWCALLVAFGSATQDIALDAFRIES ADADRQAALAATYQTGYRLAMIWAGAGVLWVAARAEVAGLAGYQAGAWAAAYLVMAAS MLVGTATVLLSPEPTPRPLAPARNLGEWLRGAVVEPFADFIRRYRWQAALILALIAVY RISDVVMGIMANPFYVDMGYTKDEVAAVTKVFGVVMTLAGAFVGGVLSMRLGVMRVLM LGAVLSALSNLLFAWLGQRGHDLTGLVLVVSADNLAGGIASAAFIAYLSGLTNVQYSA TQYALFSSMMLLLPKWLAGFSGRFVDAHGYAAFFTGTALLGLPVLLLVALAARAKTAS SV" misc_feature complement(347710..348744) /locus_tag="Alide_0315" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cl11420" /db_xref="CDD:196224" gene 348931..349596 /locus_tag="Alide_0316" /db_xref="GeneID:10102339" CDS 348931..349596 /locus_tag="Alide_0316" /inference="protein motif:PFAM:PF07883" /note="KEGG: dia:Dtpsy_0215 transcriptional regulator, AraC family; PFAM: Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain" /codon_start=1 /transl_table=11 /product="cupin 2 conserved barrel domain protein" /protein_id="YP_004124985.1" /db_xref="GI:319761048" /db_xref="InterPro:IPR013096" /db_xref="InterPro:IPR018060" /db_xref="GeneID:10102339" /translation="MPSLVHPVASVRRYAGEHQAHAHEHAQVLYALEGRMELEVAGRA AFVDTACGLVVPAGVEHGFLARPGTRMFVIDAPPQAGVDRVRRFAVPPGARPADAAGQ LALLLHAPRVLARRGMDLALLQSRVDAALHEPWPTARMAALFHLSAPRFHARLVELTG RTPQAWLRARRLDAAERALARGLPLEATALRVGYASASALAYALRRERGTGARALRGF QAK" misc_feature <349012..349209 /locus_tag="Alide_0316" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 349710..350603 /locus_tag="Alide_0317" /db_xref="GeneID:10102340" CDS 349710..350603 /locus_tag="Alide_0317" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0201 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124986.1" /db_xref="GI:319761049" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10102340" /translation="MNTASLRSIAMVLLAAMLWGTTGTAQSLAPATLSPYWVGALRLG FASAFFAVLAWPALRRGAWRGLRGAALPLAALCVAAYNLSFFAGVKASGVALGTALAI GSGPVWAGLLQTVAQRRWPAPAWWLGTLLGVAGGVAMALDGGADARAPLSGIALCLLA GLSYAGYALLNKRLVARAGPAMVNLAVFGGAGLLSLPVALLLGGVPTPSAATWGVVLY LGLAATGLAYLLFSAALRHISGATGVTLALAEPVTAFALAILVVGERPSAMAFWGLGG VLAGLLLVIWSELRAAPKLGA" sig_peptide 349710..349793 /locus_tag="Alide_0317" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.490 at residue 28" gene 350600..351454 /locus_tag="Alide_0318" /db_xref="GeneID:10102341" CDS 350600..351454 /locus_tag="Alide_0318" /inference="protein motif:PFAM:PF01435" /note="PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_0203 peptidase M48, Ste24p" /codon_start=1 /transl_table=11 /product="peptidase m48 ste24p" /protein_id="YP_004124987.1" /db_xref="GI:319761050" /db_xref="GO:0004222" /db_xref="InterPro:IPR001915" /db_xref="GeneID:10102341" /translation="MMIETSSDAPGCRCCAGGIWNARRVFVLAAAGAAALPAVAQVDV GSASGLRKLVPAEQLETSATQQYGQMLAQAKAKGALAPDGHPQLVKLRAIARRLIPHA AQWNSRAASWRWEVNLIGSKQINAFCMPGGKIAFYTGILDQLKLSDDEIAMVMGHEMA HALREHARSRIAKSQATSLGLSLGAQLLGLGELGNAAASLGTQLLTLKFSRGDETEAD LVGLELAARAGYNPQAAVSLWRKMGEATGSEGIGFLSTHPSGPDRIRELEQNVPRVEG LYRAARGG" misc_feature 350756..351397 /locus_tag="Alide_0318" /note="Peptidase family M48; Region: Peptidase_M48; cl12018" /db_xref="CDD:187163" gene complement(351497..351727) /locus_tag="Alide_0319" /pseudo /db_xref="GeneID:10102342" gene 351732..351941 /locus_tag="Alide_0320" /pseudo /db_xref="GeneID:10102343" gene complement(352011..352766) /locus_tag="Alide_0321" /db_xref="GeneID:10102344" CDS complement(352011..352766) /locus_tag="Alide_0321" /inference="protein motif:PFAM:PF00392" /note="KEGG: ajs:Ajs_0204 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH" /codon_start=1 /transl_table=11 /product="regulatory protein gntr hth" /protein_id="YP_004124988.1" /db_xref="GI:319761051" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10102344" /translation="MAKRSALYAIAAPAPSSARTLIEHAYARLRDDIVSGQLVPGEKL RVEHLKERYGVSAGTLREAITRLASDALVVTEGQRGFRVAPITTEDLEDITNLRVQIE TEALRQSIRAGDAQWRQRVEQAFAAISAEEPIAPGRRHAWEQLNTRFHEALLSGHASP WTVHVLRLLSRHTERYRSFAMALPGCVRDVHAEHTAIFEYTMAGQDARAALALEAHIR TTPDLLIQALREGRASLPGSAAPLLEGKGLQDS" sig_peptide complement(352710..352766) /locus_tag="Alide_0321" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.866) with cleavage site probability 0.799 at residue 19" misc_feature complement(352062..352736) /locus_tag="Alide_0321" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature complement(352515..352709) /locus_tag="Alide_0321" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(352524..352535,352539..352544, 352572..352574,352581..352586,352590..352604, 352623..352628,352632..352634,352701..352703, 352707..352709)) /locus_tag="Alide_0321" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(352110..352490) /locus_tag="Alide_0321" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene complement(352768..354474) /locus_tag="Alide_0322" /db_xref="GeneID:10102345" CDS complement(352768..354474) /locus_tag="Alide_0322" /inference="protein motif:PFAM:PF00158" /note="KEGG: lch:Lcho_3364 sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; Activator of aromatic catabolism; 4-vinyl reductase 4VR; helix-turn-helix Fis-type; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="sigma-54 factor interaction domain-containing protein" /protein_id="YP_004124989.1" /db_xref="GI:319761052" /db_xref="GO:0003700" /db_xref="GO:0005524" /db_xref="GO:0008134" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004096" /db_xref="InterPro:IPR010523" /db_xref="InterPro:IPR020441" /db_xref="GeneID:10102345" /translation="MPTLPALPSDADLRRQIQFSAADGRIWLAGQRMVLMHAASLGIL RRELIHTLGPAATRRLLLRVGYASGERDAALARQLRPGADAFAMFSVGPQLHMLQGAV QVTPEKLELDAATGHFHGIFAWQQSWEVEVHVRDFGPQNVPVCWMLLGYASGYTSAFM GRTVLYKEVQCAASGHAHCRIEGRPVQDWPDGAQLAADYAPDALLDDGAPQNGPRALP AWPAPMPAEDRPEPPADALGPLIGRSAGFTAATRLLRKAAGTQVTVLLTGETGVGKER FARALHALSPRAAKPFVAVNCAALPGNLVESELFGTEKGAYTGADAARAGRFERAHGG TLFLDELGELPLSAQAKLLRVLQDGQVERLGATQPRQVDVRLVAATHVDLQDAVRAGR FRQDLYYRLNVYPIRIPPLRERQDDIEPFARHLLQRFAALHDKHIGGLTDRALHALRQ YAWPGNVREMENLIERGVILADPGQPVDAAHLFPDSAPAAAPAHTLQASGRLGEARAP ACDAALIDRLLGERLDLQALETHLIEAAVERSHGNLAAAARLLGLTRPQLSYRLNKVR DI" misc_feature complement(354133..354441) /locus_tag="Alide_0322" /note="Activator of aromatic catabolism; Region: XylR_N; pfam06505" /db_xref="CDD:115177" misc_feature complement(353920..354105) /locus_tag="Alide_0322" /note="V4R domain; Region: V4R; cl08369" /db_xref="CDD:158277" misc_feature complement(352801..353757) /locus_tag="Alide_0322" /note="psp operon transcriptional activator PspF; Region: phageshock_pspF; TIGR02974" /db_xref="CDD:163093" misc_feature complement(353245..353742) /locus_tag="Alide_0322" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(353650..353673) /locus_tag="Alide_0322" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(353332..353334,353458..353460, 353647..353670)) /locus_tag="Alide_0322" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(353455..353472) /locus_tag="Alide_0322" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(353275..353277) /locus_tag="Alide_0322" /note="arginine finger; other site" /db_xref="CDD:99707" gene 354706..355017 /locus_tag="Alide_0323" /db_xref="GeneID:10102346" CDS 354706..355017 /locus_tag="Alide_0323" /inference="protein motif:PFAM:PF06099" /note="PFAM: Phenol hydroxylase subunit; KEGG: avn:Avin_30760 multi-component phenol hydoxylase, assembly subunit; LapK" /codon_start=1 /transl_table=11 /product="phenol hydroxylase subunit" /protein_id="YP_004124990.1" /db_xref="GI:319761053" /db_xref="InterPro:IPR010353" /db_xref="GeneID:10102346" /translation="MSCIGLGMRTTPPSSNDRWDLQRRYIRIVQEHGNGMVEFEFAVG EPQLYVEMVMPRAQFDDFCATQGVQPTVGRLPGQEQGSAEHEWDWNLRDARERHFRHE P" misc_feature 354748..354912 /locus_tag="Alide_0323" /note="Phenol hydroxylase subunit; Region: Phenol_hyd_sub; pfam06099" /db_xref="CDD:147972" gene 355061..356053 /locus_tag="Alide_0324" /db_xref="GeneID:10102347" CDS 355061..356053 /locus_tag="Alide_0324" /EC_number="1.14.13.7" /inference="protein motif:PRIAM:1.14.13.7" /note="KEGG: azo:azo2443 phenol hydroxylase, subunit P1; PFAM: methane/phenol/toluene hydroxylase" /codon_start=1 /transl_table=11 /product="phenol 2-monooxygenase" /protein_id="YP_004124991.1" /db_xref="GI:319761054" /db_xref="InterPro:IPR003430" /db_xref="InterPro:IPR012078" /db_xref="GeneID:10102347" /translation="MQIDLRTVSITPLRQTYDHIARRLGADKPASRYIEATMDVQPQA NFHYRPTWDPEHELFDASRTRIVMQDWYALKDPRQLYYGTYAQARARLQEVAEADFEF VESRGLAERFDDTARRTALDFYVPLRHVAWGANMNGAYQCAYGHGTAITQPCLYAGMD QLGIAQYLTRLGLLLGNQGDLEAGKQAWLEAPAWQGLRRVVEDTWVLKDWFELYVAQN VVLDGILFGLAYREVDAALSEQAGPTVSMLTRFQAEWFQDANKWVDAVIKTAAAESAD NQALLGQWYAHWRGRVQEALAPVARLALGDAGDAALARAVAAVDARMHKSGLAV" misc_feature 355118..355954 /locus_tag="Alide_0324" /note="Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain; Region: AAMH_B; cd01058" /db_xref="CDD:153116" misc_feature order(355319..355324,355331..355336,355340..355345, 355352..355357,355373..355378,355382..355384, 355739..355741,355751..355753,355760..355762, 355772..355774,355787..355789,355799..355801, 355808..355813,355817..355819,355826..355831, 355838..355840) /locus_tag="Alide_0324" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153116" gene 356076..356345 /locus_tag="Alide_0325" /db_xref="GeneID:10102348" CDS 356076..356345 /locus_tag="Alide_0325" /inference="protein motif:PFAM:PF02406" /note="PFAM: monooxygenase component MmoB/DmpM; KEGG: azo:azo2442 phenol hydrolase, subunit P2" /codon_start=1 /transl_table=11 /product="monooxygenase component mmob/dmpm" /protein_id="YP_004124992.1" /db_xref="GI:319761055" /db_xref="GO:0004497" /db_xref="InterPro:IPR003454" /db_xref="GeneID:10102348" /translation="MSNVFIAFQKNEETRAIVDAIVADNPQAIVNQQPAMVKIDAPGR LVIRKSSIEQEIGREFDLQEMHVHLITLSGNIDETDDELSLTWNQ" misc_feature 356076..356336 /locus_tag="Alide_0325" /note="MmoB/DmpM family; Region: MmoB_DmpM; pfam02406" /db_xref="CDD:145512" gene 356371..357918 /locus_tag="Alide_0326" /db_xref="GeneID:10102349" CDS 356371..357918 /locus_tag="Alide_0326" /inference="protein motif:PFAM:PF02332" /note="PFAM: methane/phenol/toluene hydroxylase; YHS domain-containing protein; KEGG: azo:azo2441 phenol hydroxylase, subunit P3" /codon_start=1 /transl_table=11 /product="methane/phenol/toluene hydroxylase" /protein_id="YP_004124993.1" /db_xref="GI:319761056" /db_xref="InterPro:IPR003430" /db_xref="InterPro:IPR007029" /db_xref="GeneID:10102349" /translation="MDRQVSKKLGLKERYNLMTRDLAWTPTYQALKDVFPYMEYEGIK IHDWDKFEDPFRMTMDSYWKYQAEKERKLYAIIDAFTQNNGHLGVTDARYINALKLFL TGVSPLEYMAHRGFAHVGRQYPGAGPRVACLMQSLDEIRHSQTQIHSLSNYNKHYNGF ANWRHQHDRVWYLSVPKSFFDDAVSAGPFEFIVAIGFAFEYVLTNLLFVPFISGAAYN GDMGAMAFGFSAQSDESRHMTLGLEIIKFILEQDPDNLPIVQAWLDKWFWRGYRVLTL VAMMMDYMLPKRVMSWKEAWETYAEQNGGALFADLARYGIKVPAGWEQACKDKDHLSH QAWNVFYNYGAAAPFHTWAPSEADMKWLSEKYPDTFDKYYRPVWEHYAKEQAEGRRFY NKTLPMLCQTCQIPMFFTEPGDPTKIAYRESDWRGQKYHFCSDGCKHIFDNEPEKYVQ SWLPVHQIYQGNCFPEDADPSKPDFDPLMEVLRWYRMEFGRDNLDYADSEDKKNFEAW RAQSTSN" misc_feature 356425..357813 /locus_tag="Alide_0326" /note="Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain; Region: AAMH_A; cd01057" /db_xref="CDD:153115" misc_feature order(356581..356586,356593..356598,356602..356607, 356617..356619,356635..356637,357031..357033, 357043..357045,357052..357054) /locus_tag="Alide_0326" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153115" misc_feature order(356668..356670,356680..356685,356896..356898, 356989..356991,357199..357201,357208..357213, 357379..357381,357415..357417,357421..357423) /locus_tag="Alide_0326" /note="putative path to active site cavity [active]" /db_xref="CDD:153115" misc_feature order(356695..356697,356785..356787,356794..356796, 356968..356970,357070..357072,357079..357081) /locus_tag="Alide_0326" /note="diiron center [ion binding]; other site" /db_xref="CDD:153115" gene 357985..358341 /locus_tag="Alide_0327" /db_xref="GeneID:10102350" CDS 357985..358341 /locus_tag="Alide_0327" /inference="protein motif:PFAM:PF04663" /note="PFAM: Phenol hydroxylase conserved region; KEGG: rpf:Rpic12D_3551 phenol hydroxylase conserved region" /codon_start=1 /transl_table=11 /product="phenol hydroxylase conserved region protein" /protein_id="YP_004124994.1" /db_xref="GI:319761057" /db_xref="InterPro:IPR006756" /db_xref="GeneID:10102350" /translation="MAVTSAAPYDFPQQDTADKFPAPLLYIGWEDHKMFCAPFCVPMP PATRFGDMVQGALPGLYGAHPDFARIDWNRAEWFVSGKPFTPDMDKTVAENGLGHKSV IRFRTPGLTGLQGSCF" misc_feature 358024..358218 /locus_tag="Alide_0327" /note="Phenol hydroxylase conserved region; Region: Phenol_monoox; pfam04663" /db_xref="CDD:147023" gene 358412..359482 /locus_tag="Alide_0328" /db_xref="GeneID:10102351" CDS 358412..359482 /locus_tag="Alide_0328" /inference="protein motif:PFAM:PF00970" /note="PFAM: Oxidoreductase FAD-binding domain protein; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: azo:azo1850 phenol 2-monooxygenase" /codon_start=1 /transl_table=11 /product="oxidoreductase fad-binding domain protein" /protein_id="YP_004124995.1" /db_xref="GI:319761058" /db_xref="GO:0009055" /db_xref="GO:0016491" /db_xref="GO:0051536" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR001221" /db_xref="InterPro:IPR001433" /db_xref="InterPro:IPR008333" /db_xref="InterPro:IPR017927" /db_xref="GeneID:10102351" /translation="MSHQLTIEPLGQVIEVEEGQTILDAALRAGIYLPHACCHGLCGT CKVQVTDGEVEHGEASGFALMDYERDEGLCLACCATLESDSAVIEAEIDDEPDALNLP VQDFAGVVSRIEDLTPTIKGVWIELDAPMTFQAGQYINLQIPGESQPRAFSIASSPAQ ASEIELNIRLVPGGKGTGWVHQQLRPGERVRLSGPYGRFFVRASAHDKQGLGYLFLAG GSGLSSPRSMVLDLLAAGGDKPITLVNGARAQDELYHHAEFLQLAAEHPRFTYVAALS GEPEGSGWQGARGYVHEAAKAHFGNDFRGHKAYLCGPPLMIDACISTLMQGRLFERDI YTEKFISAADAQQVRSPLFKKI" misc_feature 358412..359443 /locus_tag="Alide_0328" /note="CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated; Region: PRK07609" /db_xref="CDD:181058" misc_feature 358421..358672 /locus_tag="Alide_0328" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(358508..358513,358520..358522,358529..358531, 358535..358546,358637..358642) /locus_tag="Alide_0328" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(358520..358522,358535..358537,358544..358546, 358640..358642) /locus_tag="Alide_0328" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature 358709..359428 /locus_tag="Alide_0328" /note="Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P); Region: phenol_2-monooxygenase_like; cd06211" /db_xref="CDD:99807" misc_feature order(358823..358825,358859..358870,358910..358918, 358922..358924,358934..358942,359069..359071, 359078..359080,359420..359422,359426..359428) /locus_tag="Alide_0328" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99807" misc_feature order(358859..358861,358865..358870) /locus_tag="Alide_0328" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99807" misc_feature order(358931..358933,358940..358942,358949..358951, 358970..358972,358994..358996,359000..359002) /locus_tag="Alide_0328" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99807" misc_feature order(359054..359056,359066..359077,359081..359083) /locus_tag="Alide_0328" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99807" misc_feature order(359069..359074,359147..359155,359345..359350) /locus_tag="Alide_0328" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99807" gene 359496..359837 /locus_tag="Alide_0329" /db_xref="GeneID:10102352" CDS 359496..359837 /locus_tag="Alide_0329" /inference="protein motif:PFAM:PF00111" /note="PFAM: ferredoxin; KEGG: ajs:Ajs_0217 ferredoxin" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_004124996.1" /db_xref="GI:319761059" /db_xref="GO:0009055" /db_xref="GO:0051536" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR006058" /db_xref="GeneID:10102352" /translation="MASYTITIAETGESYRCLDERSVLEGMEALGRKGIPVGCRQGGC GVCKVQVLEGRYAKRVMSRAHVSAEEEASGCVLSCRIKPSSDLRVSVVGAMKKNVCRP QEQAAPTLSTP" misc_feature 359508..359762 /locus_tag="Alide_0329" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(359598..359603,359610..359612,359619..359621, 359625..359636,359727..359732) /locus_tag="Alide_0329" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(359610..359612,359625..359627,359634..359636, 359730..359732) /locus_tag="Alide_0329" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" gene 359860..360786 /locus_tag="Alide_0330" /db_xref="GeneID:10102353" CDS 359860..360786 /locus_tag="Alide_0330" /inference="protein motif:TFAM:TIGR03211" /note="KEGG: ajs:Ajs_0218 catechol 2,3-dioxygenase; TIGRFAM: catechol 2,3 dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase" /codon_start=1 /transl_table=11 /product="catechol 2,3 dioxygenase" /protein_id="YP_004124997.1" /db_xref="GI:319761060" /db_xref="GO:0008198" /db_xref="GO:0018577" /db_xref="InterPro:IPR000486" /db_xref="InterPro:IPR004360" /db_xref="InterPro:IPR017624" /db_xref="GeneID:10102353" /translation="MAMTGVLRPGHAQLRVLDLEESVQWYTDVMGLVPMGRDQQGRAY FKTRAERDHNSVVLRQADQAGIDFFAFKVLDKATLEDFDRKLQAYGVKTERIPAGELL ETGERVRFKIPTGHTIELYAEKTDVGNGIGYQDPDVDVLDGPGIRPIRMDHCLLYGGD IDGNVKLFTEVLGFTLVERVKLEDGKTDLAVWLTCSAKAHDIAMVRHGEDGKLHHVSF QMPSWESVLRAADIMSVNRVSIDIGPTRHGITQGTTIYFFDPSGNRLETFCGGYDHYP DMHPITWSWEHVGRGIFYHDRKLNDAFLSVVT" misc_feature 359872..360783 /locus_tag="Alide_0330" /note="catechol 2,3 dioxygenase; Region: catechol_2_3; TIGR03211" /db_xref="CDD:163184" misc_feature 359872..360237 /locus_tag="Alide_0330" /note="N-terminal domain of catechol 2,3-dioxygenase; Region: 2_3_CTD_N; cd07265" /db_xref="CDD:176686" misc_feature order(359878..359883,360004..360006,360013..360015, 360073..360075,360235..360237) /locus_tag="Alide_0330" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176686" misc_feature 360292..360717 /locus_tag="Alide_0330" /note="This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632" /db_xref="CDD:196803" misc_feature order(360316..360318,360328..360330,360427..360429, 360466..360468,360472..360474,360502..360504, 360625..360627,360649..360651,360655..360657) /locus_tag="Alide_0330" /note="active site" /db_xref="CDD:176657" misc_feature order(360316..360318,360502..360504,360655..360657) /locus_tag="Alide_0330" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176657" gene 360786..361217 /locus_tag="Alide_0331" /db_xref="GeneID:10102354" CDS 360786..361217 /locus_tag="Alide_0331" /inference="protein motif:PFAM:PF03928" /note="PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_0219 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124998.1" /db_xref="GI:319761061" /db_xref="InterPro:IPR005624" /db_xref="GeneID:10102354" /translation="MQRSVEQRAITAEAAHAAVAAACAKAGELGIRVNAAVTDASGVL AAFLRMPGAFLHSVDIAIDKAYTAAGFGFATAQWVGILRGDEALRLGMPQRPRNVVFG GGLPMREGGVLIGGIGVSGGSAEQDEICARAALAALGLEET" misc_feature 360867..361175 /locus_tag="Alide_0331" /note="Domain of unknown function (DUF336); Region: DUF336; cl01249" /db_xref="CDD:194079" gene complement(361218..361355) /locus_tag="Alide_0332" /pseudo /db_xref="GeneID:10102355" gene complement(361368..362457) /locus_tag="Alide_0333" /pseudo /db_xref="GeneID:10102356" gene 362556..363461 /locus_tag="Alide_0334" /db_xref="GeneID:10102357" CDS 362556..363461 /locus_tag="Alide_0334" /inference="similar to AA sequence:KEGG:CtCNB1_3154" /note="KEGG: ctt:CtCNB1_3154 ZorfX" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004124999.1" /db_xref="GI:319761062" /db_xref="GeneID:10102357" /translation="MKTTSIAAAAAAAAAAALALLAATGAHADGHYVPGVEGIQAASV PPPGMYYLGYLVNYNIDDFRAPGSSTNLPGHNSGTVTALANRFVWITGHKLLGADYGV EAIVPLVRTSLTINAAGISDSRSGVGDIYLGPLVLGWHGPQWDAVAAAGMWFDTASTS HPASAGKGFKSTMLTGGLTYYFDGAKTLSGSALMRYEFNGRNSAGVRPGDQLTLEWGL GKSFGAVSAGLVGYSQWQTTNDDGAGASTNKAARHAVGAELVYPVPGAGVFLKGAVYK EFSATAGTGPQPKGSLVRFTLVKAF" sig_peptide 362556..362642 /locus_tag="Alide_0334" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.839 at residue 29" misc_feature 362643..363458 /locus_tag="Alide_0334" /note="Protein involved in meta-pathway of phenol degradation [Energy production and conversion]; Region: COG4313" /db_xref="CDD:34035" gene 364232..365692 /locus_tag="Alide_0335" /db_xref="GeneID:10102358" CDS 364232..365692 /locus_tag="Alide_0335" /inference="protein motif:TFAM:TIGR03216" /note="KEGG: ajs:Ajs_0220 betaine-aldehyde dehydrogenase; TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase" /codon_start=1 /transl_table=11 /product="2-hydroxymuconic semialdehyde dehydrogenase" /protein_id="YP_004125000.1" /db_xref="GI:319761063" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR016160" /db_xref="InterPro:IPR017628" /db_xref="GeneID:10102358" /translation="MKEFLNFINGEYVRGTSGKTFDDINPVDGSLIGRIHEAGQGEVN AAVAAAQAALKGDWGRLAVVERCKLLDAVAGEINRRFDDFLQAEIADTGKPHHLASHV DIPRGAANFQIFIDTIKSTATESFNMRTPDGKTALSYGVRVPRGVIAVVCPWNLPLLL MTWKVGPALACGNTVVVKPSEETPATATLLGEVMNAVGMPKGVYNVVHGFGPGSAGEF LTRHPGVNGITFTGETRTGSAIMKAAADGVRPVSLEMGGKNAAVVFADCDFQVAVDTL TRSCFENAGQVCLGTERVYVERPIFEKLVAALKERAEAMKPGLPFDKDTKIGPLISKK HQAKVLGLYQKAKDEGATIVTGGGIPDMPEALRGGSWVQPTIWTGLPETATVVTEEIF GPCCHISPFDTEEEVLGKVNANRYGLATAVFTQDIARANRLAHQIEVGLCWINAWFLR DLRTPFGGSKQSGIGREGGVHSLEFYTELRNVMVKF" misc_feature 364271..365677 /locus_tag="Alide_0335" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature 364298..365683 /locus_tag="Alide_0335" /note="Human aldehyde dehydrogenase family 8 member A1-like; Region: ALDH_F8_HMSADH; cd07093" /db_xref="CDD:143412" misc_feature order(364685..364693,364709..364711,364763..364765, 364769..364774,364862..364864,364877..364882, 364922..364930,364937..364939,364946..364948, 364991..364996,365093..365095,365399..365401, 365405..365407,365597..365599) /locus_tag="Alide_0335" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143412" misc_feature order(364694..364696,364991..364993,365084..365086, 365093..365095) /locus_tag="Alide_0335" /note="catalytic residues [active]" /db_xref="CDD:143412" gene 365754..366617 /locus_tag="Alide_0336" /db_xref="GeneID:10102359" CDS 365754..366617 /locus_tag="Alide_0336" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: ctt:CtCNB1_3150 alpha/beta hydrolase fold protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004125001.1" /db_xref="GI:319761064" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10102359" /translation="MTDTARNPELAHTIAAAGLRTNYHDVGQGDPVLLIHGSGPGVSA WANWRLVMPALAERARVIAPDMAGFGYSERPAGFAYGLDAWVRQAVGLLDALGIARAD LVGNSFGGGLALALAIRHPERVRRLVLMGSVGVPFAITPGLDAVWGYEPSFEAMRALL DIFAFDRALVNDELARLRYEASIRPGFHESFAAMFPAPRQRWVDALASRESDIRRLPH ETLVIHGREDRVIPLANAYTLADWLPRAQLHVYGRCGHWTQIEHAARFARLVGGFLAE AAADEPLPLAA" misc_feature 365808..366572 /locus_tag="Alide_0336" /note="2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; Region: biphenyl_bphD; TIGR03343" /db_xref="CDD:132386" misc_feature <366006..>366149 /locus_tag="Alide_0336" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 366622..367404 /locus_tag="Alide_0337" /db_xref="GeneID:10102360" CDS 366622..367404 /locus_tag="Alide_0337" /EC_number="4.2.1.80" /inference="protein motif:TFAM:TIGR03220" /note="TIGRFAM: 2-oxopent-4-enoate hydratase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase" /codon_start=1 /transl_table=11 /product="2-oxopent-4-enoate hydratase" /protein_id="YP_004125002.1" /db_xref="GI:319761065" /db_xref="InterPro:IPR002529" /db_xref="InterPro:IPR017632" /db_xref="GeneID:10102360" /translation="MNTPLHEQLGEELYQALRQRQVLEPLSNRHPGLTIEDAYAIQQR MLARRLAAGEKVVGKKIGVTSKAVMDMLGVYQPDFGWLTDAMVYNEGEAIPADTLIQP KAEGEIAFVLKKTLQGPGVTAADVLAATEGVMACFEIVDSRIRDWKIKIQDTVADNAS CGVFVLGDRLVDPRDVDLGTCGMVLEKNGEIVATGAGAAALGHPANAVAWLANTLGRL GIALEAGEVVLSGSLGIMVPVQAGDNLRVTIGGIGGCSVRFV" misc_feature 366634..367398 /locus_tag="Alide_0337" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 367423..368337 /locus_tag="Alide_0338" /db_xref="GeneID:10102361" CDS 367423..368337 /locus_tag="Alide_0338" /EC_number="1.2.1.10" /inference="protein motif:TFAM:TIGR03215" /note="TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: ajs:Ajs_0223 acetaldehyde dehydrogenase; PFAM: Acetaldehyde dehydrogenase ; Semialdehyde dehydrogenase NAD - binding" /codon_start=1 /transl_table=11 /product="acetaldehyde dehydrogenase (acetylating)" /protein_id="YP_004125003.1" /db_xref="GI:319761066" /db_xref="GO:0008774" /db_xref="InterPro:IPR000534" /db_xref="InterPro:IPR003361" /db_xref="InterPro:IPR015426" /db_xref="GeneID:10102361" /translation="MNQKIKCALIGPGNIGTDLLAKLQRSPVLEPVWMVGIDPESDGL KRAREMGIKTTHEGVDGLVPHMKQDGVQIVFDATSAYVHAENSRKVNAQGALMIDLTP AAIGPYCVPPVNLKEHLGRGETNVNMVTCGGQATIPMVVAVSRVQPVAYGEIVATVSS RSAGPGTRKNIDEFTRTTAGAIEKVGGAKKGKAIIVINPADPPLIMRDTVHCLTEEEP DREAITQSIHAMLAEVQKYVPGYKLVNGPVFDGKRVSVFLEVEGLGDYLPKYAGNLDI MTAAAARTAEMFAEEMLAGRLAFQPVAA" misc_feature 367423..368250 /locus_tag="Alide_0338" /note="acetaldehyde dehydrogenase; Validated; Region: PRK08300" /db_xref="CDD:181366" misc_feature 367438..367782 /locus_tag="Alide_0338" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 367813..368226 /locus_tag="Alide_0338" /note="Prokaryotic acetaldehyde dehydrogenase, dimerisation; Region: AcetDehyd-dimer; pfam09290" /db_xref="CDD:150078" gene 368352..369389 /locus_tag="Alide_0339" /db_xref="GeneID:10102362" CDS 368352..369389 /locus_tag="Alide_0339" /inference="protein motif:TFAM:TIGR03217" /note="KEGG: ajs:Ajs_0224 4-hydroxy-2-ketovalerate aldolase; TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; PFAM: pyruvate carboxyltransferase; DmpG communication domain protein" /codon_start=1 /transl_table=11 /product="4-hydroxy-2-oxovalerate aldolase" /protein_id="YP_004125004.1" /db_xref="GI:319761067" /db_xref="GO:0008701" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR012425" /db_xref="InterPro:IPR017629" /db_xref="GeneID:10102362" /translation="MTFNGKKITLHDMTLRDGMHPKRHLMTLEQMKSVAQGLDAAGVP LIEVTHGDGLGGASVNYGFPAHSDEEYLGTVIPLMKQAKVSALLLPGIGTVDHLKMAH GLGVHTIRVATHCTEADVSEQHITAARKLDMDTVGFLMMAHMNSASGLVKQARLMEGY GANCIYVTDSAGYLLPEQVKERIAAVRAALKPETELGFHGHHNLAMGVANSIAAIEAG ANRIDAAAAGLGAGAGNTPMEVLVAVLDRMGLQTGVDVWKIQDVAEDLVVPLMDFPIR IDRDALTLGYAGVYGSFLLFAKRAEKKYGIPARDLLVELGRRGMVGGQEDMIEDTALT MARERGIKVAA" misc_feature 368364..369371 /locus_tag="Alide_0339" /note="4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated; Region: PRK08195" /db_xref="CDD:181282" misc_feature 368373..369164 /locus_tag="Alide_0339" /note="4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain; Region: DRE_TIM_HOA; cd07943" /db_xref="CDD:163681" misc_feature order(368397..368402,368409..368411,368490..368492, 368763..368765,368769..368771,368859..368861, 368946..368948,368952..368954) /locus_tag="Alide_0339" /note="active site" /db_xref="CDD:163681" misc_feature order(368397..368402,368490..368492) /locus_tag="Alide_0339" /note="catalytic residues [active]" /db_xref="CDD:163681" misc_feature order(368400..368402,368946..368948,368952..368954) /locus_tag="Alide_0339" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163681" misc_feature 369168..369365 /locus_tag="Alide_0339" /note="DmpG-like communication domain; Region: DmpG_comm; pfam07836" /db_xref="CDD:149094" gene 369423..370211 /locus_tag="Alide_0340" /db_xref="GeneID:10102363" CDS 369423..370211 /locus_tag="Alide_0340" /EC_number="4.1.1.77" /inference="protein motif:TFAM:TIGR03218" /note="TIGRFAM: 4-oxalocrotonate decarboxylase; KEGG: ajs:Ajs_0225 4-oxalocrotonate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase" /codon_start=1 /transl_table=11 /product="4-oxalocrotonate decarboxylase" /protein_id="YP_004125005.1" /db_xref="GI:319761068" /db_xref="InterPro:IPR002529" /db_xref="InterPro:IPR017630" /db_xref="GeneID:10102363" /translation="MALNQATIAQLAEHLENCQLQVRDTPKITDEHPGMDWDDAYAIQ DAILQRKLARGARVVGLKAGLTSHAKMKQMGVESPVFGFLVDDYCVPEGGTVQTRELI HPKVEPEIVFVLKHALKGPGCHIGAVLAATDFVLPGIEVIDSRYRDFKFDLKSVVADN TSAARFVVGGQAQRPERVDLRTCGIVLEKNGQPVALGAGAAVLGHPAAAIAMLANHLG RRGQELPAGSMILSGGVTEAVSVQAGDNVSLRVQGMGSVSLRFA" misc_feature 369423..370205 /locus_tag="Alide_0340" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 370252..371220 /locus_tag="Alide_0341" /db_xref="GeneID:10102364" CDS 370252..371220 /locus_tag="Alide_0341" /inference="similar to AA sequence:KEGG:CtCNB1_3145" /note="KEGG: ctt:CtCNB1_3145 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="twin-arginine translocation pathway signal" /protein_id="YP_004125006.1" /db_xref="GI:319761069" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10102364" /translation="MQRRDFMAAAALAGLAPAWAQAGYPAKPVRMIVPFPPGGPTDVM GRTAAKAMGDRLGQQFVVENKAGAGGNIGTDAVAKAAPDGYTIGLTAISSLAIAPHLY SSVPFNVEKDFVPISLVGTTPCALVIHPAAPFSDLKGMVAYAKANPGKLSYATSGIGT SNHLAAELLQSVAGIQLTGVPYKGSSQIVPDLLSGTVMMSMESSLATTLQHVRAGKLK AIAVTSPQRAKALPDVPTVAESGYPGFEVETWFGLVAPARTPQAVVDKLHDAWAAGSA APEARAAFDNISGNLRVTTPQQFAEFIRAENRRWGDLIRKLGIKAD" sig_peptide 370252..370314 /locus_tag="Alide_0341" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.971 at residue 21" misc_feature 370321..371208 /locus_tag="Alide_0341" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 370381..371208 /locus_tag="Alide_0341" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 371247..371438 /locus_tag="Alide_0342" /db_xref="GeneID:10102365" CDS 371247..371438 /locus_tag="Alide_0342" /inference="protein motif:TFAM:TIGR00013" /note="KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase" /codon_start=1 /transl_table=11 /product="4-oxalocrotonate tautomerase family enzyme" /protein_id="YP_004125007.1" /db_xref="GI:319761070" /db_xref="GO:0016853" /db_xref="InterPro:IPR004370" /db_xref="InterPro:IPR018191" /db_xref="GeneID:10102365" /translation="MPFAQIYMIEGRTEEQKKAVIEKVTQALVDAVGAPPANVRVWIH DVPKENWGIAGVSAKELGR" misc_feature 371250..371423 /locus_tag="Alide_0342" /note="4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cd00491" /db_xref="CDD:29603" misc_feature order(371250..371255,371358..371360) /locus_tag="Alide_0342" /note="active site 1 [active]" /db_xref="CDD:29603" misc_feature order(371250..371270,371304..371306,371313..371318, 371325..371327,371337..371342) /locus_tag="Alide_0342" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29603" misc_feature order(371259..371261,371265..371267,371295..371300, 371307..371312,371319..371321,371352..371357, 371361..371375,371379..371384,371391..371417) /locus_tag="Alide_0342" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:29603" misc_feature order(371265..371267,371397..371399) /locus_tag="Alide_0342" /note="active site 2 [active]" /db_xref="CDD:29603" gene complement(371503..372141) /locus_tag="Alide_0343" /db_xref="GeneID:10102366" CDS complement(371503..372141) /locus_tag="Alide_0343" /inference="similar to AA sequence:KEGG:Ajs_0228" /note="KEGG: ajs:Ajs_0228 beta-lactamase domain-containing protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain-containing protein" /protein_id="YP_004125008.1" /db_xref="GI:319761071" /db_xref="GeneID:10102366" /translation="MLHYHTIPVTAFQQNCSLVWCDQTMDAAVIDPGGDLDVLLAEAK RRGLHLKAIWLTHAHIDHAGGTGELAQRLALPIIGPHEGDQYWIDGLPQQGQMFGFPP ALHFTPTRWLHDGDTVTIGRETLHVRHCPGHTPGHVVFHAPQVDRCFVGDVLFAGSIG RTDFPGGNHQQLIDSITQRLWPMGDQTVFIPGHGPESTFGRERRSNPYVGNT" misc_feature complement(371521..372141) /locus_tag="Alide_0343" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(372207..372959) /locus_tag="Alide_0344" /db_xref="GeneID:10102367" CDS complement(372207..372959) /locus_tag="Alide_0344" /inference="protein motif:PFAM:PF09339" /note="KEGG: dac:Daci_4281 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="regulatory protein iclr" /protein_id="YP_004125009.1" /db_xref="GI:319761072" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10102367" /translation="MSNPPAPSKPADGGVIAVTRALQLLEAFAVGESHLSLAELSRRA GLHKTTVLRLARTLAQSGYMVQREDGDWRLGPAAGWLGARYQAGFDVQNVLEPALREL TQTSGESAAFYVREGNVRTCLVRVEGPQALRHHARMGEGLPLDKGSPGRVILAFSGEP GEVYEEIRRRGYHWSIGEREQGVATVSAPVFGRNWRLLGCVCISGPQSRLPQEKLEAL AQTIIKTANQLSYALAGKAASTAAQVPGVWHP" misc_feature complement(372261..372911) /locus_tag="Alide_0344" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(372654..372911) /locus_tag="Alide_0344" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(372264..372572) /locus_tag="Alide_0344" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 373084..374064 /locus_tag="Alide_0345" /db_xref="GeneID:10102368" CDS 373084..374064 /locus_tag="Alide_0345" /inference="similar to AA sequence:KEGG:Daci_4280" /note="KEGG: dac:Daci_4280 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125010.1" /db_xref="GI:319761073" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102368" /translation="MLARTLSRSLCAAALGLAAATGALAQAAYPAKPIRLIVPFPPGG GTDMIARTVAQKVADQNKWSVIVDNRPGAGGNLGVDAAAKAAPDGYTLVMGQTSNLAI NPTLYPRLPYDPLKDLVPVALVSSSPIVMAAPANTPFKTFADVVAAAKKQPDGITLGY SGNGTVAHLAGELAENAAGIKLRHIPYKGAAQAMTDLVSGQIDLYMSSVPTLLGQVRN GKLRPIVVTSLKRSAQLPDTPSLAESGYRGFDAVTWFGVLAPAGTPASIVQQLNKAIN EALKQPEVAEKLRSEGGDVLGGTPEQFDQLLRAEVPRWGKIVKDSGASLD" sig_peptide 373084..373161 /locus_tag="Alide_0345" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.690 at residue 26" misc_feature 373168..374049 /locus_tag="Alide_0345" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 373228..374052 /locus_tag="Alide_0345" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 374072..374944 /locus_tag="Alide_0346" /db_xref="GeneID:10102369" CDS 374072..374944 /locus_tag="Alide_0346" /inference="protein motif:PFAM:PF04909" /note="PFAM: amidohydrolase 2; KEGG: dac:Daci_4279 amidohydrolase 2" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004125011.1" /db_xref="GI:319761074" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10102369" /translation="MREPVAFSAGTGTPGVALPAGACDCHVHVYDRRYPAAPGAKLLP PDASAHDYRALQRRLGTTRAVLVTPSTYGTDNRCMLDGLAALGPQARGVAVIGGGEID AELQRLHDAGVRGVRLNLSLGVSGTADMLEPLARRIAPLGWHLQLLMAPELLAAQAGV LRRLPVPLVFDHFGRIAPGAQGQAAHALLLELLQAGRAWIKLSGGYIVSALHTVEDPA LDPLAASYLRCAPERVLWGSDWPHATASAGLQPMPDDARQIDRLHDWTRLAFVPLRRV LVDNPQALYGFPPL" misc_feature 374111..374932 /locus_tag="Alide_0346" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature 374132..374923 /locus_tag="Alide_0346" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature order(374147..374149,374153..374155,374501..374503, 374585..374587,374786..374788) /locus_tag="Alide_0346" /note="active site" /db_xref="CDD:30035" gene 374967..375956 /locus_tag="Alide_0347" /db_xref="GeneID:10102370" CDS 374967..375956 /locus_tag="Alide_0347" /inference="similar to AA sequence:KEGG:Daci_4278" /note="KEGG: dac:Daci_4278 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125012.1" /db_xref="GI:319761075" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102370" /translation="MSAHDFSATRRRLLATLGVALAAGPALAQEWPGGKTITYVVPYP PGGSTDVLGRNIAQRLGPALGTTVIVDNKPGATGTIGAAFVARAQPDGYTLLGTTIGP QAIAPHLMGKLPYDPIAGFEPVITLGTIPHILVVGAGQPFQGVADLVAAGKAQPGKLA YASGGNGTILQMQAELLQQQTGARFIHVPYKGDTPALQDTLGGQVQFMFAPAAAALPH VQAGKLRALAVTSAQRLPALPQVPTMGEAGLKDFVVEQWHAVFVPARTPAAIVQRLNA EIAKALKDPAVTALADKLGITLVGGTPGQLAALQKADSTKWAKVIRDGNIKAD" sig_peptide 374967..375053 /locus_tag="Alide_0347" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 29" misc_feature 375051..375944 /locus_tag="Alide_0347" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 375123..375944 /locus_tag="Alide_0347" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 375989..376675 /locus_tag="Alide_0348" /db_xref="GeneID:10102371" CDS 375989..376675 /locus_tag="Alide_0348" /inference="protein motif:PFAM:PF03737" /note="PFAM: Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase" /codon_start=1 /transl_table=11 /product="dimethylmenaquinone methyltransferase" /protein_id="YP_004125013.1" /db_xref="GI:319761076" /db_xref="InterPro:IPR005493" /db_xref="InterPro:IPR005829" /db_xref="GeneID:10102371" /translation="MSQLPEVIRSFERVSAEVVQQAGTFQAAILADVAGRRGTLHARV APVHERMKLAGPAFTVEVRPGDNLMIHAAIALAQPGDILVIDGKGDQTAALMGTLMLS ACKKRGLGGVIVDGAIRDKLELLELGFPVFSAGFNPAGPTKFVPGRINHPISCAGASV FPGDLVVGDADGVVVIERAKAPAMMALAVKKVADEAARIEAIARGDTASKWLPAALRA AGVLKEGEEL" misc_feature 376007..376648 /locus_tag="Alide_0348" /note="hypothetical protein; Validated; Region: PRK06201" /db_xref="CDD:180465" misc_feature 376007..376561 /locus_tag="Alide_0348" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene 376672..377589 /locus_tag="Alide_0349" /db_xref="GeneID:10102372" CDS 376672..377589 /locus_tag="Alide_0349" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vap:Vapar_5586 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein" /protein_id="YP_004125014.1" /db_xref="GI:319761077" /db_xref="GO:0003824" /db_xref="GO:0048037" /db_xref="GO:0051287" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:10102372" /translation="MSRPAILITAADLAPQALALLADYEIVYAGRSPTEDDIVALCRR HDPVAIIVRYSKVGAAAMDAAPSLKVISKHGSGTDTIDKAAAKVRGIEVVAAVGANAA AVAEQALALLLACAKSVPQLNERMHAGHWDKATHKSLELSGRTIGLIGLGAIGLRFAK MVDALGMHVLGFDPFAKNLPDYVQPADLETIWRESDAISLHCPLTDDNRHLLGAGTLA RCKQGVIVVNTARGGLIDEAALLAAVQSGQVRMAGLDSFAVEPMTAGHPFQHQPGFIL SPHIGGVTSDAYVNMGLGAARNALAVLAR" misc_feature 376678..377583 /locus_tag="Alide_0349" /note="Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052" /db_xref="CDD:31252" misc_feature 377026..377514 /locus_tag="Alide_0349" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 377614..378603 /locus_tag="Alide_0350" /db_xref="GeneID:10102373" CDS 377614..378603 /locus_tag="Alide_0350" /inference="similar to AA sequence:KEGG:Vapar_3894" /note="KEGG: vap:Vapar_3894 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125015.1" /db_xref="GI:319761078" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102373" /translation="MQFNKNRRLALIHQALAAIALVATGLPVQAQNWPERPIKLVVPY PAGGNADNTARLLATQLSARLGQQVVVDNRPGGSGTIGAAAVAKAAPDGYTLLLDATA FTVNPSLFAKLPFDAAKDFAPISLVMQAPLLLVVPAVSPLKTVADLVQAAKARPGQLT YASAGNGGAQHLAGELFKQGAKVSMTHIPYRGGAPALTDLIGGQVDLMFSATTASGPF VKSGKLRALAISSVQRTPGWEQVPTVAEAGLPGFQVNEWNGLFAPAGTPQPVLQRLEA ETRAIVASPEMKKRFAELGVQGVGSSAQEFKSFVQTETAKWAGVIRTSGIRMD" sig_peptide 377614..377706 /locus_tag="Alide_0350" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 31" misc_feature 377686..378597 /locus_tag="Alide_0350" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 377773..378591 /locus_tag="Alide_0350" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 378950..379906 /locus_tag="Alide_0351" /db_xref="GeneID:10102374" CDS 378950..379906 /locus_tag="Alide_0351" /inference="similar to AA sequence:KEGG:Daci_4274" /note="KEGG: dac:Daci_4274 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125016.1" /db_xref="GI:319761079" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102374" /translation="MKSLKKYLLAACACIALAAHAAFPERPITIVVPYAPGGAADAVA RVIASRLGTRLGGSVIVDNKAGASGTIGAGYVAKAQADGYTMLYDATPYSINPHLFPK MPYAANALQPLSLVLLAPNVLIVPASAPFKSVGDLIAKAKAEPGKLNFASGGSGTVQR LAAELFRQKLGLDMVHVPYKSGGPAITDVMAGQVDFMFGTVAATAPHIAAGKLRALAV SSPERSRRLPDVPTVAEAAIPGYEAYEWNGMFLPAGTPAPIAAQLHKALAEVLQEDEV RQRLADMGAQPIGSTPAEFAAFLKKEDAKWGEVVRKGHIKLD" sig_peptide 378950..379015 /locus_tag="Alide_0351" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 22" misc_feature 379016..379882 /locus_tag="Alide_0351" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 379076..379885 /locus_tag="Alide_0351" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 379912..380787 /locus_tag="Alide_0352" /db_xref="GeneID:10102375" CDS 379912..380787 /locus_tag="Alide_0352" /inference="protein motif:PFAM:PF04909" /note="PFAM: amidohydrolase 2; KEGG: dac:Daci_4273 amidohydrolase 2" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004125017.1" /db_xref="GI:319761080" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10102375" /translation="MAQPLLSAPVPHSVGLNRPARTLPPLACDSHMHIFDPRFAPSPH WRRQPPDAPVAAYRQLQQRLGTRRAVVVTPSTYGTGNACTLDALDQLGDDARGVAVVA QDVQDAELDRLHARRVRGLRVNFVSPQSWGETTPQMLATLARKAARLPGWHIQVFMHP EQIVALESVLAALPVPLVVDHLGRIDPAQGQRAEAHGALRRLLDGGNAWVKLSGAYMR STAPAYADTLPLAQALVRAAPERLVWGSDWPHTTEAPGTVNDAGLVDLLRAWAGSDAA MDRILVDNPARLYGF" misc_feature 379966..380784 /locus_tag="Alide_0352" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature 379987..380775 /locus_tag="Alide_0352" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature order(380002..380004,380008..380010,380368..380370, 380452..380454,380650..380652) /locus_tag="Alide_0352" /note="active site" /db_xref="CDD:30035" gene 380800..381717 /locus_tag="Alide_0353" /db_xref="GeneID:10102376" CDS 380800..381717 /locus_tag="Alide_0353" /inference="protein motif:PFAM:PF08450" /note="PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain-containing protein" /codon_start=1 /transl_table=11 /product="smp-30/gluconolaconase/lre-like region-containing protein" /protein_id="YP_004125018.1" /db_xref="GI:319761081" /db_xref="InterPro:IPR005511" /db_xref="InterPro:IPR013658" /db_xref="GeneID:10102376" /translation="MFLLQAPEVRELELFTSMPEPLRRRQRSAWADANRGGAVTDSFL EGPVFDDAGNLYVTDIPWGRILRIDAQGAWTLVAEYDGEPNGMKFLDAGTLLITDYKN GLMRLDVASGKVTPYLERRNSERFKGVNDLVFDSAGNLYFTDQGQSGLHDPSGRLYRL RPSGQLDLLLANVPSPNGVALSPDERVLYLAATRGNCVWRVPLLPDGSVAKVGQFFTS YGPSGPDGLAVDAEGRVLVANPGLGYVWVLNGRAEPVLVLRGAPGSSTTNLAFGGEGR RQLYVTDSTHGRILRAALDAPGLALHRPR" misc_feature 380932..381645 /locus_tag="Alide_0353" /note="SMP-30/Gluconolaconase/LRE-like region; Region: SGL; pfam08450" /db_xref="CDD:192042" misc_feature 381196..>381351 /locus_tag="Alide_0353" /note="Strictosidine synthase; Region: Str_synth; pfam03088" /db_xref="CDD:111929" gene complement(381729..382712) /locus_tag="Alide_0354" /db_xref="GeneID:10102377" CDS complement(381729..382712) /locus_tag="Alide_0354" /inference="similar to AA sequence:KEGG:Rmet_4433" /note="KEGG: rme:Rmet_4433 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004125019.1" /db_xref="GI:319761082" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10102377" /translation="MHPIITRRGALRYALAAACAPGLAFAQEAPFPSTNVHLVVPYAA GGATDIVARAVADKLGPRWGKPVVIDNKPGAGTTLAAAQVARAPGDGHLLYMTTSAHT ISAALYKKLDYDPLASFAALTLVAKVPLVLVVRPSLDVSTLDEFTRYVRANPDKAAYA SPGNGTAQHLTGEMFNAAMKTRMVHVPYKGDAPAITDLLGGSVDAMFATLTVVLPHIA SGKLKAIALANGSRIEKVPAIPTFAEAGLPNFEAATWFGVLAPASLPKGLRERISRDI RAVVDQPDLRARLIDLGGEVVSNTPAAFEAFMQAESAKWQGIARQSGAVIN" sig_peptide complement(382632..382712) /locus_tag="Alide_0354" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.999 at residue 27" misc_feature complement(381744..382622) /locus_tag="Alide_0354" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(381741..382562) /locus_tag="Alide_0354" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(382731..383624) /locus_tag="Alide_0355" /db_xref="GeneID:10102378" CDS complement(382731..383624) /locus_tag="Alide_0355" /EC_number="1.1.1.31" /inference="protein motif:PRIAM:1.1.1.31" /note="KEGG: vei:Veis_2089 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="YP_004125020.1" /db_xref="GI:319761083" /db_xref="InterPro:IPR006115" /db_xref="GeneID:10102378" /translation="MSNTTSQVIGFIGLGVMGEPICRNLAVKTGARVIAHDLDAAPLQ RLAAHGVQAAPSAAAVMQAADVVFLSLPSGEVVAQLCRQDGGLLASARAGQTIVDLST SPVDTTRALAGEFAALGARFVDAPVARTRAAAEAGTLAVMVGAAPEVFEAVKPLIATF ASDIALCGPVGCGQVLKILNNMVLFETVVAVSEAKAIGEKAGVDPNVLFDTLSKGSAD SFALRNHGMKAVLPGEFPERAFSVLYARKDLKYALQLARDAGVDARGAAVVDAWFQQA IDSGLGEKYHPVISRLIAGQR" misc_feature complement(382743..383600) /locus_tag="Alide_0355" /note="3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084" /db_xref="CDD:32267" misc_feature complement(<383076..383600) /locus_tag="Alide_0355" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(383647..385098) /locus_tag="Alide_0356" /db_xref="GeneID:10102379" CDS complement(383647..385098) /locus_tag="Alide_0356" /inference="protein motif:PFAM:PF00171" /note="PFAM: Aldehyde Dehydrogenase; KEGG: vei:Veis_2088 betaine-aldehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="YP_004125021.1" /db_xref="GI:319761084" /db_xref="GO:0016491" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR016160" /db_xref="GeneID:10102379" /translation="MLEHKPMLIAGKDAPGEDGIAPLVSVNPATGATNHEVAAAGPRA VDEAVRSAAQACKAGAWTQMLPMQRARILFGIADRMERDGDHLARLQMLENGKVWSEC VKQVKSAAATFRYYGAVCETTGSEVTPARGNYLSMTAYEPYGVVAAITPWNSPLTMEA QKIAPALAAGNAVVLKPSEVTPSTGLAVGRIALEAGLPPGLLNVLPGTGHDVGAALVA HPLVRMVSFTGGTESGRRIAEVAARKLMPVALELGGKSPHIVFADADIDAAVAAVADG IFEGSGQSCVAGSRLFVQRSVHDAVVRKLVERARSLRVDLPDAAGAEMGPLATFAHRD KVERMVEDARTAGAQILAGGARPGAAALARGAYYLPTVIGGIDNRAAIAQQEIFGPVL CVLPFDDEEDLVAQANDSAFGLASGVWTADYQRAWRVARALEAGTVWINTYKQLSIST PFGGFKESGIGREKGASGMRLYQQPKGIYFGMA" misc_feature complement(383659..385026) /locus_tag="Alide_0356" /note="Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like; Region: ALDH_DhaS; cd07114" /db_xref="CDD:143432" misc_feature complement(383671..385026) /locus_tag="Alide_0356" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(order(383743..383745,383857..383859, 383935..383937,383941..383943,384244..384246, 384340..384348,384388..384393,384400..384402, 384409..384420,384562..384567,384571..384573, 384616..384618,384640..384654)) /locus_tag="Alide_0356" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143432" misc_feature complement(order(384244..384246,384253..384255, 384346..384348,384640..384642)) /locus_tag="Alide_0356" /note="catalytic residues [active]" /db_xref="CDD:143432" gene complement(385293..386021) /locus_tag="Alide_0357" /db_xref="GeneID:10102380" CDS complement(385293..386021) /locus_tag="Alide_0357" /inference="protein motif:PFAM:PF09339" /note="KEGG: rme:Rmet_4432 IclR family transcriptional regulator family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="regulatory protein iclr" /protein_id="YP_004125022.1" /db_xref="GI:319761085" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10102380" /translation="MLAPTSTEPSDKSDGVAAVDRALHIATALANSPQALTLTELSNV TGMYKSTLLRLLASLERAGLVTHRADKRYALGPLAFVFGRSFEQVHGLQGAIQPILQW LVEQGTESPSFHVRHDQSHRLCLMRIDSNHSTLDRVRTGDLLPLHKGAAGKVITTLEQ GSQAQTAAAGDLVFTSFGERDPLCGAIAAPVFGPSASLLGAISVSGPLERFSELAVQR MKTLVLAAAQRATHSLGGKWPSAS" misc_feature complement(385713..385976) /locus_tag="Alide_0357" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(385314..385970) /locus_tag="Alide_0357" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(385338..>385466) /locus_tag="Alide_0357" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 386294..386698 /locus_tag="Alide_0358" /db_xref="GeneID:10102381" CDS 386294..386698 /locus_tag="Alide_0358" /inference="similar to AA sequence:KEGG:Tcur_0017" /note="KEGG: tcu:Tcur_0017 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125023.1" /db_xref="GI:319761086" /db_xref="GeneID:10102381" /translation="MSSHTTHTSLAERFASLAPHVNANACLVHRGRALTADLVIVVGT ARFLLRIHQGEVVEVTQRFALFHPCALFVQGTAKAWERLWEKVPPPGWHDLFALHKRG EMVIEGDTRLLFSHLQYLKDVLEMPRHVPADA" gene 386719..387567 /locus_tag="Alide_0359" /db_xref="GeneID:10102382" CDS 386719..387567 /locus_tag="Alide_0359" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_2534 carboxylesterase protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004125024.1" /db_xref="GI:319761087" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10102382" /translation="MKDRIEPIVGRYIHVDVLGETCRIYFEECGQGIPLLCLHTAGSD GRQFRHLLNDAGVTDRFRVIAFDMPWHGKSYPPVGFHERDYELTTERYVATIRAFSAA LGLDRPVVMGCSIGGRIVLQLAHAHGAEFRALIGLESADHQQPWYDTSWLNRPDVHGG EVCAALVSGLIAPQSPSEYRHETLWQYKQSGPGIFKGDLYFYRVDSDLRGKLGGIDTS TTPLYLLTGEYDFSCSPEDSIRTAETIPGAKVTVMKELGHFPMSENPAQFRKYILPVL DEIAAR" misc_feature 386821..387522 /locus_tag="Alide_0359" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 387622..388776 /locus_tag="Alide_0360" /db_xref="GeneID:10102383" CDS 387622..388776 /locus_tag="Alide_0360" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: bav:BAV0983 ABC transporter, substrate-binding protein" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004125025.1" /db_xref="GI:319761088" /db_xref="InterPro:IPR000709" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10102383" /translation="MKKILAASLLCVGCGAFAQEELKIGAIVTLSGAGAAWGQAMLYA AELAADDVNAKGGLDVGGRKYKVKVVAYDDKYQAGEAVTAANRLVFEDKVKYVIGPVG SAAALAVGPIMEKNKVVMLTLGFTDKALAADKPFSFRPNLTTMETSQPQIDWIVKAKN IKKVGALFPNDETGQQIAQDLEKAYAKAGAQMNAKEFFERERVDMMPLLTRIMAKGVD AIELDGNAPGTAGLIVKQARELGFKGHIIRSGGPATAEIVNVAGTGATNGMLVNTPIN PANAEVKAYAERYFGKYKKRMNGFSPAFYDGTRMLFQAMGQAGTATDTDKVRVALEGI KDFKGILGTLNWTGKEVYGSNHQISAPFYVARVQDGQEVVESTCSLSACK" sig_peptide 387622..387678 /locus_tag="Alide_0360" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 at residue 19" misc_feature 387664..388731 /locus_tag="Alide_0360" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 387688..388713 /locus_tag="Alide_0360" /note="Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011" /db_xref="CDD:195943" gene 388798..389667 /locus_tag="Alide_0361" /db_xref="GeneID:10102384" CDS 388798..389667 /locus_tag="Alide_0361" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: bav:BAV0982 ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004125026.1" /db_xref="GI:319761089" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10102384" /translation="MDFTFLIGQALTNGLIIGLLYLLMAIGFTLVFGVMRVVNFAHGE FYMLGAFLAYVCVTRLQLPFLAAVLATFAVTLVAGWIIEVLVLKGFRGNELNGMISTI GLAMVLQNGALLVFGPDPQSMPPVAQGVVSLGPIVLPMSRLYVVAFSIAVLVLLYLFL MRSKGGRALRAVVQDTEIASAQGIRSHLMYPLGFGIGVALAAVAGALMAPVFSVSPSI GSTPLLKAFIVVILGGLGSIPGAALASLLLGVVESAANTFMSSSMSDMLLFGFVILML IFRPSGLLGKSGR" misc_feature 388837..389649 /locus_tag="Alide_0361" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 389326..389382 /locus_tag="Alide_0361" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 389672..390670 /locus_tag="Alide_0362" /db_xref="GeneID:10102385" CDS 389672..390670 /locus_tag="Alide_0362" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: dma:DMR_11370 ABC transporter permease protein" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004125027.1" /db_xref="GI:319761090" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10102385" /translation="MHASSSISTMKPRAPDSGAGAPQARWRLWLPGLLVLFALPLFTS SPFHMHLAVLICLNIIFVNGLSLLSRTGQLSFCHAAFMGMGAYASVIATTQWHVPFLL SVALGVAVAAAVAFLLGAVILRLQGVYFVLVTFCFGELFRLFLLEGGSYTGGANGIAN IPPASILGLAFDTKTSFYVLAAACAFASIALLIALFRTPQGTALDAVGDNQELAEASG IGIQRTQMFAFVLGSAMAGFAGALLAHYLGFVSPESFNQHISVAAIVMLVIGGRASVL GPILGALIMTPLPELFRSAIETQNILYGITLILVLKFLPGGLVGIAAKLRGKGGKA" misc_feature 389834..390631 /locus_tag="Alide_0362" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 390305..390361 /locus_tag="Alide_0362" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 390667..391446 /locus_tag="Alide_0363" /db_xref="GeneID:10102386" CDS 390667..391446 /locus_tag="Alide_0363" /inference="protein motif:PFAM:PF00005" /note="KEGG: pth:PTH_2348 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125028.1" /db_xref="GI:319761091" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10102386" /translation="MTALLKVDGLSRYFGGLAAVKDLSFELNAGEIVGLIGPNGAGKS TAFNVISGSLAPSAGRIQFAGQSIEGMRPSQVVRHGLARTFQSATVYPAATVQENLYR GALARFDVPVWAQIAQTASYRSALRKVREEVDEVLEITGLAPYRDDVAGALAYGHQKR IGVAIGLATRPRLLLLDEPAAGLNPEECAEFGCLLKTLRDRHEISLLFVEHHMALVMN TCEKIIVLVQGQKIAQGTPDEVRNNPAVIEAYLGVDEDAHG" misc_feature 390667..391425 /locus_tag="Alide_0363" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 390679..391404 /locus_tag="Alide_0363" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 390775..390798 /locus_tag="Alide_0363" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(390784..390789,390793..390801,390922..390924, 391195..391200,391297..391299) /locus_tag="Alide_0363" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 390913..390924 /locus_tag="Alide_0363" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 391123..391152 /locus_tag="Alide_0363" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 391183..391200 /locus_tag="Alide_0363" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 391207..391218 /locus_tag="Alide_0363" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 391285..391305 /locus_tag="Alide_0363" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 391433..392146 /locus_tag="Alide_0364" /db_xref="GeneID:10102387" CDS 391433..392146 /locus_tag="Alide_0364" /inference="protein motif:PFAM:PF00005" /note="KEGG: oan:Oant_4420 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125029.1" /db_xref="GI:319761092" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102387" /translation="MPTVEVKDVVVHYGLVEALHGVSFTVPAGQIVALVGSNGAGKST TLKALMGLKKVSAGSIHMDGRRIDATGPAQRVSMGLALSPEGRRLFPRMTVWENLMVG AHTVGSAAARNRSLEQVCALFPRVQERRSQLAGSLSGGEQQMVAIGRALMSHPQILML DEPSLGIAPKIVSEIAQAIVRLNRETGISVILVEQNARLALKMAHHAYVFEQGTVIRS GSGQELLRDAFVQKAFLGV" misc_feature 391433..392143 /locus_tag="Alide_0364" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 391445..392113 /locus_tag="Alide_0364" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 391538..391561 /locus_tag="Alide_0364" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(391547..391552,391556..391564,391685..391687, 391913..391918,392015..392017) /locus_tag="Alide_0364" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 391676..391687 /locus_tag="Alide_0364" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 391841..391870 /locus_tag="Alide_0364" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 391901..391918 /locus_tag="Alide_0364" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 391925..391936 /locus_tag="Alide_0364" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 392003..392023 /locus_tag="Alide_0364" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 392149..393171 /locus_tag="Alide_0365" /db_xref="GeneID:10102388" CDS 392149..393171 /locus_tag="Alide_0365" /inference="protein motif:PFAM:PF04909" /note="PFAM: amidohydrolase 2; KEGG: bbr:BB2353 hypothetical protein" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004125030.1" /db_xref="GI:319761093" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10102388" /translation="MENLPIVPRAEVRPQWLARHHEAPLEPELPIIDPHHHLSDSLWG GYLQDDLLADLGAGHNIQSTVFIQVGFGYREDGPGHLRPVGETERVAAIAGRIPAEAG TQVCEGIVGFADLALGARVEETLAAHLQAAAGRFRGIRCHAAAHAQFQYGVMHAPPLH LYMDPKFREGYATLARFGLTFDSWAYHTQLDELCDLARAFPDIPVVIDHIGVPLGVGP YVGQRDAVFAEWKRLLQKIAALPNVCIKLGGLGMSVFGFGFHLAGRPPTSEELAQAWS PYILTCIEIFGPSRCMFESNFPVDKGTCSYPVLWNTFKRITAGMSEDEKRQLYRDTAA RFYRLA" misc_feature 392221..393168 /locus_tag="Alide_0365" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature 392242..393165 /locus_tag="Alide_0365" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" gene complement(393156..393887) /locus_tag="Alide_0366" /db_xref="GeneID:10102389" CDS complement(393156..393887) /locus_tag="Alide_0366" /inference="protein motif:PFAM:PF00392" /note="KEGG: ajs:Ajs_0229 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH" /codon_start=1 /transl_table=11 /product="regulatory protein gntr hth" /protein_id="YP_004125031.1" /db_xref="GI:319761094" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10102389" /translation="MRCANVGTFFLACPMPSNTLPEPAADVPESAADTVFHGIVQGLA QQRFVPGQRLVEVDLAAQFGVSRASVREALQRLAAEGLVDLFRNKGAAIRTLSARETL EVLDVAERMTGLLARSAARAVAAGAPRAPIEDALARLHEADRGQGQETFASARRALYR ALLATSGSRELRRLLPTIHMPIVYAQHRPAALQRIRMRDYRAMCEAVLQGDEDAADAA GMQHVRNVREAIEAAIASDLGQARR" misc_feature complement(393177..393845) /locus_tag="Alide_0366" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature complement(393615..393773) /locus_tag="Alide_0366" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(393615..393626,393630..393635, 393663..393665,393672..393677,393681..393695, 393717..393722,393723..393725)) /locus_tag="Alide_0366" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" gene 393971..395173 /locus_tag="Alide_0367" /db_xref="GeneID:10102390" CDS 393971..395173 /locus_tag="Alide_0367" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004125032.1" /db_xref="GI:319761095" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102390" /translation="MDFSLSPELRALRDKTRRFIAEQVIPLESDPRQSHHGPDESLRR ELVARARAAGLLTPHASREMGGLGLSHVEKAVVFEEAGYSRLGPTALNIHAPDEGNIH LMEEVATPAQKERWLRPQVAGELRSCFAMTEPSPGAGADPSMLQATAVRDGGDYVING RKWFITGADGADYAIVMARMEDGSATMFLTDMDRPGIVLESNMDAMDACFTGGHGVLR FENLRVPAADVLGEIGKGFRYAQVRLAPARLTHCMRWLGQARRAHDTALDYVRRRHAF GKPLVEHEGVGFMVADNDMDLHTARLHIWHTAWLLDQGEKCNFESSRAKVVCSEAEWR VVDRSVQMLGGQGVTGETPVMRIFTDMRAFRIYDGPSEVHRWSMARKLAHLSEKAEAE LLREGGAA" misc_feature 393971..395125 /locus_tag="Alide_0367" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 393989..395110 /locus_tag="Alide_0367" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(394265..394267,394355..394357,394361..394363, 394460..394462,394466..394468,395066..395074, 395078..395080,395084..395086) /locus_tag="Alide_0367" /note="active site" /db_xref="CDD:173838" gene 395170..395943 /locus_tag="Alide_0368" /db_xref="GeneID:10102391" CDS 395170..395943 /locus_tag="Alide_0368" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_0225 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004125033.1" /db_xref="GI:319761096" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10102391" /translation="MTAAMDRFSLRGRLALVTGASSGLGTHFAQVLAAAGARVAVAAR RVDKLQGVVDAIAAEGGEARAFALDVADSASVRACFDALCAWGVPDVVVNNAGVTVTR PALEQTEEDFDHVLGTNLKGNWLVATEAARRMVAAGKGGAIVNVASILGERVAGGVAP YAISKAGVVQATKALALELARHGIRVNALLPGYVVTDLNRGFLTSPAGEKLRARIPSR RFGEVTDLDGPLLLLASDAGAAMSGATLAVDGAHLVSSL" sig_peptide 395170..395271 /locus_tag="Alide_0368" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.868) with cleavage site probability 0.738 at residue 34" misc_feature 395191..395931 /locus_tag="Alide_0368" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 395194..395922 /locus_tag="Alide_0368" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature order(395224..395226,395230..395235,395239..395241, 395296..395304,395452..395460,395605..395613, 395650..395652,395662..395664,395740..395751) /locus_tag="Alide_0368" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(395524..395526,395611..395613,395650..395652, 395662..395664) /locus_tag="Alide_0368" /note="active site" /db_xref="CDD:187535" gene 395940..396980 /locus_tag="Alide_0369" /db_xref="GeneID:10102392" CDS 395940..396980 /locus_tag="Alide_0369" /inference="protein motif:PFAM:PF01636" /note="PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_004125034.1" /db_xref="GI:319761097" /db_xref="InterPro:IPR002575" /db_xref="InterPro:IPR008266" /db_xref="GeneID:10102392" /translation="MSGPANPLPVEALADYLRAQGLAGSAPLQVRVLAGGQSNPTYRV TAGAGRDYVLRKKPPGTLIASAHAIDREYRVMKALADTGVPVPRMLHYCESGELLGTP FYVMEYLAGRVLMDQSLPGMEPAERHAIYREMNRVIAALHAVDYRAVGLGDYGKEGNY VGRQIARWSRQCRESTVPMNEAMHCLMDWLPEHLPSGDETTLVHGDYRLDNLVFHPTE PRVIGVLDWELSTLGHPLADLAYQCMAWRIPPSLWRGIAGLDLPALGIPQEAEYIAWY GAATGRDAAGHWDYYLAYNLFRMAAILHGIAQRAADGNAAAEDAVETGAKAGPLAELG WQAAQRYTATRK" misc_feature 395940..396857 /locus_tag="Alide_0369" /note="Predicted aminoglycoside phosphotransferase [General function prediction only]; Region: COG3173" /db_xref="CDD:32986" misc_feature 396021..396686 /locus_tag="Alide_0369" /note="Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: ACAD10_11_like; cd05154" /db_xref="CDD:88617" misc_feature order(396048..396050,396060..396062,396096..396098, 396102..396104,396198..396200,396255..396266, 396555..396557,396567..396572,396576..396578, 396612..396617,396672..396674) /locus_tag="Alide_0369" /note="putative active site [active]" /db_xref="CDD:88617" misc_feature order(396048..396050,396555..396557,396672..396674) /locus_tag="Alide_0369" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:88617" misc_feature order(396060..396062,396096..396098,396102..396104, 396198..396200,396255..396266,396555..396557, 396567..396572,396576..396578,396612..396617) /locus_tag="Alide_0369" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88617" gene complement(397078..397878) /locus_tag="Alide_0370" /db_xref="GeneID:10102393" CDS complement(397078..397878) /locus_tag="Alide_0370" /EC_number="4.2.99.18" /inference="protein motif:TFAM:TIGR00633" /note="TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: dia:Dtpsy_0227 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease iii xth" /protein_id="YP_004125035.1" /db_xref="GI:319761098" /db_xref="GO:0003677" /db_xref="GO:0004518" /db_xref="GO:0004519" /db_xref="InterPro:IPR000097" /db_xref="InterPro:IPR004808" /db_xref="InterPro:IPR005135" /db_xref="GeneID:10102393" /translation="MFKLTSLNLNGIRSATSKGVEAWIDQNRPDCICVQEIKAQSADM QGRFEELAGLRGHFHFAAKKGYSGVGIYTRHEPSDVLAGYGSQEFDAEGRYMELRFDT PSRRLSIISAYFPSGSSGEERQLAKYRFLDEFHPHLMRLKAEREFILCGDINIAHRQA DLKNWRSNQKNSGFLPEERAWMTKLLGDDTDGGLVDVYRRLQPDATDACYTWWSNRGQ AYANNVGWRLDYHLATPALAQLARTEAIYKGEKFSDHAPITVGYEMAL" misc_feature complement(397093..397872) /locus_tag="Alide_0370" /note="Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; Region: Nape_like_AP-endo; cd10281" /db_xref="CDD:197336" misc_feature complement(order(397114..397119,397123..397125, 397192..397197,397201..397203,397207..397209, 397213..397215,397225..397227,397231..397239, 397243..397245,397375..397377,397381..397383, 397387..397389,397417..397419,397423..397425, 397510..397512,397525..397527,397531..397533, 397540..397542,397597..397599,397681..397686, 397750..397752,397765..397767,397771..397773, 397834..397851,397855..397857)) /locus_tag="Alide_0370" /note="putative active site [active]" /db_xref="CDD:197336" misc_feature complement(order(397114..397116,397123..397125, 397195..397197,397201..397203,397207..397209, 397213..397215,397231..397239,397243..397245, 397375..397377,397381..397383,397387..397389, 397417..397419,397423..397425,397510..397512, 397525..397527,397531..397533,397540..397542, 397597..397599,397681..397686,397750..397752, 397765..397767,397771..397773,397834..397851, 397855..397857)) /locus_tag="Alide_0370" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:197336" misc_feature complement(order(397114..397116,397417..397419, 397423..397425,397531..397533,397540..397542, 397771..397773,397855..397857)) /locus_tag="Alide_0370" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197336" misc_feature complement(order(397114..397119,397192..397194, 397417..397419,397423..397425,397540..397542, 397771..397773,397855..397857)) /locus_tag="Alide_0370" /note="putative catalytic site [active]" /db_xref="CDD:197336" misc_feature complement(order(397117..397119,397771..397773, 397849..397851)) /locus_tag="Alide_0370" /note="metal binding site A [ion binding]; metal-binding site" /db_xref="CDD:197336" misc_feature complement(order(397114..397116,397195..397197, 397201..397203,397243..397245,397417..397419, 397423..397425,397531..397533,397540..397542)) /locus_tag="Alide_0370" /note="putative AP binding site [nucleotide binding]; other site" /db_xref="CDD:197336" misc_feature complement(order(397114..397116,397417..397419, 397423..397425)) /locus_tag="Alide_0370" /note="putative metal binding site B [ion binding]; other site" /db_xref="CDD:197336" gene 397889..398587 /locus_tag="Alide_0371" /db_xref="GeneID:10102394" CDS 397889..398587 /locus_tag="Alide_0371" /EC_number="2.4.2.10" /inference="protein motif:TFAM:TIGR00336" /note="TIGRFAM: orotate phosphoribosyltransferase; KEGG: dia:Dtpsy_0228 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="orotate phosphoribosyltransferase" /protein_id="YP_004125036.1" /db_xref="GI:319761099" /db_xref="GO:0004588" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR004467" /db_xref="GeneID:10102394" /translation="MVTESAQGPGRDRLAQDFVRFAVESGVLRFGEFKTKAGRMSPYF FNAGLFDDGAKMGRLAQFYAQALVASGIEFDMLFGPAYKGIPLGATVAVELARLGRNV PFAYNRKEAKDHGEGGTLVGAPLKGRVLIIDDVMSAGTAARESIALIRAAGATPHAIA IALDRQEKATENGRDVDHSAVQYVRRELGMQVCAIARLADLLRYLEADGGDPQIHAHH ERVLAYRQRYGVDD" misc_feature 397928..398578 /locus_tag="Alide_0371" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 398608..399312 /locus_tag="Alide_0372" /db_xref="GeneID:10102395" CDS 398608..399312 /locus_tag="Alide_0372" /inference="similar to AA sequence:KEGG:Dtpsy_0229" /note="KEGG: dia:Dtpsy_0229 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125037.1" /db_xref="GI:319761100" /db_xref="GeneID:10102395" /translation="MAGVRRMGGLLACAAGLALGALAPAWAQQGKTAQEVYTCIDRQG RRITSDRPIAECVDREQRVLDHTGTERRRIGPTLTEHERAAQEAQRRKEAEERARFLE ERRRERVLLARYPDEAAHQAEREAAIDQVEEVIVVAHKRIQALKAERRRIDVELEFYR GDPAKAPAKLQRQIAENDQALAEQQRFLVAQDLEKRRIHQRFDAELAQLRQLWAAQRA AATQWAQPPATAPVQK" sig_peptide 398608..398691 /locus_tag="Alide_0372" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 28" gene complement(399381..400826) /locus_tag="Alide_0373" /db_xref="GeneID:10102396" CDS complement(399381..400826) /locus_tag="Alide_0373" /inference="protein motif:TFAM:TIGR00133" /note="KEGG: dac:Daci_0351 glutamyl-tRNA(Gln) amidotransferase, B subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(gln) amidotransferase, b subunit" /protein_id="YP_004125038.1" /db_xref="GI:319761101" /db_xref="GO:0004588" /db_xref="InterPro:IPR004413" /db_xref="InterPro:IPR006075" /db_xref="InterPro:IPR017958" /db_xref="InterPro:IPR018027" /db_xref="GeneID:10102396" /translation="MTAKLIQGYEVVIGFETHAQLATKAKIFSRASTAFGAEPNTQAC AVDLALPGTLPVMNREAVACAIKLGLALGSHIAPESIFARKNYFYPDLPKGYQISQFE IPVVQGGEVGFYLGDEKKTVRLVRAHLEEDAGKSLHEEFHGMSGIDLNRAGTPLLEIV TEPDMRSTEEAVAYAKALHQIVTWIGICDGNMQEGSFRCDANVSVRRPGQPLGTRREI KNLNSFKYMQQAIDYEIRWQIEQLEDGHAIQQATVLFDPDTGETRAMRTKEDAADYRY FPDPDLPPLVIAPEWVEQVKAAMPELPRAMAARFVQQYGLPEYDATTLTQSQAMAAYF EDAAKACGAPKLASNWVMGEISRRLNTEEIGMDAVKVSSQQLATLIGRIGDGTISNNA ARQVFEALWSGEGSDVDAVIDAKGLKQMNDSGALEKIIDEVIAANPANVEQYKAGKDK AFNALVGQVMKASKGKANPQQVNELLKAKLA" misc_feature complement(399387..400802) /locus_tag="Alide_0373" /note="aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated; Region: gatB; PRK05477" /db_xref="CDD:180111" misc_feature complement(399942..400799) /locus_tag="Alide_0373" /note="GatB/GatE catalytic domain; Region: GatB_N; pfam02934" /db_xref="CDD:145865" misc_feature complement(399387..399830) /locus_tag="Alide_0373" /note="GatB domain; Region: GatB_Yqey; cl11497" /db_xref="CDD:159498" gene complement(400829..402319) /locus_tag="Alide_0374" /db_xref="GeneID:10102397" CDS complement(400829..402319) /locus_tag="Alide_0374" /inference="protein motif:TFAM:TIGR00132" /note="KEGG: ajs:Ajs_0237 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(gln) amidotransferase, a subunit" /protein_id="YP_004125039.1" /db_xref="GI:319761102" /db_xref="InterPro:IPR000120" /db_xref="InterPro:IPR004412" /db_xref="GeneID:10102397" /translation="MSSTVLHDMGVAQLAAALRGGQVSAVEAAQHFLARAKSHQHLGA YVALNEDATLAQARAQDASIAAGTAAPLAGVPIAHKDIFVTRDFPTTAASRMLAGYRS PFDATVVARLAEAGCVTLGKLNCDEFAMGGTNENSAVAPVGFDAPRPVRNPWDGARVP GGSSGGSAAAVAARLAPAVTGTDTGGSIRQPASFCGVTGIKPTYGRASRYGMIAFASS LDQAGPMARSAEDCALLLSAMCGPDPDRDSTSLDRPAEDFGRALGDSLEGLRIGVPAE FFGEGLAADVHAAVDAALKEYEKLGARLVPITLPRTDLSVPVYYILAPAEASSNLSRF DGVRYGYRAKDYADLLDMYKKTRAQGFGDEVKRRIMIGTYVLSEGYYDAYYLQAQKLR RMIADDFQAAFKECDLIAGPVAPTTAWRLGSQNDPVANYLADIYTLPASLAGLPGMSV PAGFGESGLPVGLQLIGNYFQEARLLNAAHRLQQATDFHLRAPEGI" misc_feature complement(400838..402304) /locus_tag="Alide_0374" /note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154" /db_xref="CDD:30503" misc_feature complement(400871..402268) /locus_tag="Alide_0374" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene complement(402316..402615) /locus_tag="Alide_0375" /db_xref="GeneID:10102398" CDS complement(402316..402615) /locus_tag="Alide_0375" /inference="protein motif:TFAM:TIGR00135" /note="TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: aav:Aave_0293 aspartyl/glutamyl-tRNA amidotransferase subunit C" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(gln) amidotransferase, c subunit" /protein_id="YP_004125040.1" /db_xref="GI:319761103" /db_xref="InterPro:IPR003837" /db_xref="GeneID:10102398" /translation="MALTPQDIGRIAHLARLELSPAESERMLTQLNGFFGIVEKMRAV DTGGIAPLPHPVAAIQDVHLRLRDDVASEPDQREANQQSAPAVERGLFLVPKVIE" misc_feature complement(402319..402615) /locus_tag="Alide_0375" /note="Glu-tRNAGln amidotransferase C subunit; Region: Glu-tRNAGln; cl00495" /db_xref="CDD:186035" gene 402821..403864 /locus_tag="Alide_0376" /db_xref="GeneID:10102399" CDS 402821..403864 /locus_tag="Alide_0376" /inference="protein motif:TFAM:TIGR00904" /note="KEGG: dia:Dtpsy_0233 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl" /codon_start=1 /transl_table=11 /product="cell shape determining protein, mreb/mrl family" /protein_id="YP_004125041.1" /db_xref="GI:319761104" /db_xref="InterPro:IPR004753" /db_xref="GeneID:10102399" /translation="MFGVFRRYFSTDLAIDLGTANTLIFARDKGIVLDEPSVVAIRHE GGPHGKKVIQAVGHEAKAMLGKVPGNIEAIRPMKDGVIADFVITEQMIKQFIKMVHPR SVLTPSPRIIICVPCGSTQVERRAIKDAAEAAGATAVYLIEEPMAAGIGAGLPVSEAS GSMVVDIGGGTTEVGVISLGGMVYKGSVRVGGDKFDESIINYIRRNYGMLIGEPTAES IKKNIGSAFPGSEVKEMEVKGRNLSEGVPRSFTISSNEVLEALTEPLNQIVSAVKTAL EQTPPELGADIAERGMMLTGGGALLRDLDRLLAEETGLPVLVAEEPLTCVVRGCGIAL ERMDRQGSIFTSE" misc_feature 402836..403858 /locus_tag="Alide_0376" /note="rod shape-determining protein MreB; Provisional; Region: PRK13927" /db_xref="CDD:184401" misc_feature 403310..>403651 /locus_tag="Alide_0376" /note="Cell division protein FtsA; Region: FtsA; cl11496" /db_xref="CDD:196250" gene 403894..404811 /locus_tag="Alide_0377" /db_xref="GeneID:10102400" CDS 403894..404811 /locus_tag="Alide_0377" /inference="protein motif:TFAM:TIGR00219" /note="KEGG: ajs:Ajs_0240 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC" /codon_start=1 /transl_table=11 /product="rod shape-determining protein mrec" /protein_id="YP_004125042.1" /db_xref="GI:319761105" /db_xref="InterPro:IPR005223" /db_xref="InterPro:IPR007221" /db_xref="GeneID:10102400" /translation="MPLGTLDRTAPTLFKHGPSPLSRLTLYSALALFLMVADARFHVA DPLRKAVATVLYPLQWLMLQPVELAGKGAQYFQSLQAAQQAADEASKKMAQMSVRAGE ADQLLRENAELRQLLALRERLDTPAQAAQVLYDTADPYTRRIMVDRGQLAGVEPGSPV VDAAGVLGQVTRVFPMLSEVTLLIDRDQAIPVLNLRTGARSVAYGDPVAGPGGGMELR FTPANADVQEGDLLTTSGVDGLYPAGLPVARVLRVERRADSAFARIYCAPLAQVHGAR HVMVLKPLVADMPARPEPEPAPQKRGGRK" misc_feature 403930..404742 /locus_tag="Alide_0377" /note="rod shape-determining protein MreC; Provisional; Region: PRK13922" /db_xref="CDD:184397" misc_feature 404281..404745 /locus_tag="Alide_0377" /note="rod shape-determining protein MreC; Region: MreC; pfam04085" /db_xref="CDD:146620" gene 404808..405329 /locus_tag="Alide_0378" /db_xref="GeneID:10102401" CDS 404808..405329 /locus_tag="Alide_0378" /inference="protein motif:TFAM:TIGR03426" /note="KEGG: ajs:Ajs_0241 rod shape-determining MreD transmembrane protein; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD" /codon_start=1 /transl_table=11 /product="rod shape-determining protein mred" /protein_id="YP_004125043.1" /db_xref="GI:319761106" /db_xref="InterPro:IPR007227" /db_xref="GeneID:10102401" /translation="MIMPKGQQLLLPVSPAFIWASLLAALALNMLPLGRVVWTPDWVM VLLVFWGMHQPQRVGLGVAFAMGLCIDVNQSALLGQHALVYCGLMFGAQYTHRRLLWF GPLLQALQLLPLFFAAHAVELALRVVAGGGTLPGFEGLVAPLLEAAIWPLASWILLAP QRRPPDQDDNRPL" sig_peptide 404808..404882 /locus_tag="Alide_0378" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.611) with cleavage site probability 0.356 at residue 25" misc_feature 404913..405299 /locus_tag="Alide_0378" /note="rod shape-determining protein MreD; Region: MreD; cl01087" /db_xref="CDD:189144" gene 405346..407289 /locus_tag="Alide_0379" /db_xref="GeneID:10102402" CDS 405346..407289 /locus_tag="Alide_0379" /EC_number="2.4.1.129" /inference="protein motif:TFAM:TIGR03423" /note="TIGRFAM: penicillin-binding protein 2; KEGG: dia:Dtpsy_0236 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2" /protein_id="YP_004125044.1" /db_xref="GI:319761107" /db_xref="InterPro:IPR001460" /db_xref="InterPro:IPR005311" /db_xref="InterPro:IPR017790" /db_xref="GeneID:10102402" /translation="MTELRNVEADTWRFRLRVFVLGVVVLLAFVLIAARLVVLQVVRH EDLADQAESNRTAIVPIVPNRGLIIDRNGVVLATNYSAYTLEITPSRAMDLEATIDEL AQIVDIQPRDRRRFKRLREESRSFDSLPIRTRLTDQEVARFAAQRYRFPGVEIKARLF RNYPLGEVASHAIGYIGRINQREKERIEDSDDAANYRGTDYIGKLGVEQSFESTLHGH TGFERMETSAGGHAVRRLNSHPATPGNTVMLSLDIKLQKLVEDMFGERRGALVALDPR NGEVLALVSKPTFDPNLFVEGIDQENWQALNESINKPLLNRALRGTYPPGSTYKPFMA LAALELKKRSPTQVYSDPGFFNYGGRTFRSHEGGLGGVDMHRAIQYSSNTYFYSLAVD MGVDVIHDFMKPLGFGQITGIDLGGEVRGVLPSTEWKRNTYKRPEMKRWYSGETVSLG IGQGYNNFTMLQLAVAEATLANGGTRYRPHLVKAVKDQVSGQVSEVQQPPGEPLGFNP KNVAIVHNALMAVNQAGTGRRVFMGAPYTSAGKTGTAQAVSLGQNVKYNARLLEEHQR DHSLFAAFAPVEEPRIAVAVIVENAGFGAAAAAPIVRRVFDYWLLGQYPGEQDLAAVA KGQAGAPVGVPRRADEVSVVPEP" misc_feature 405463..407181 /locus_tag="Alide_0379" /note="penicillin-binding protein 2; Region: pbp2_mrdA; TIGR03423" /db_xref="CDD:188321" misc_feature 405526..406056 /locus_tag="Alide_0379" /note="Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717" /db_xref="CDD:190723" misc_feature 406147..407115 /locus_tag="Alide_0379" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene complement(407305..408216) /locus_tag="Alide_0380" /db_xref="GeneID:10102403" CDS complement(407305..408216) /locus_tag="Alide_0380" /inference="protein motif:TFAM:TIGR01229" /note="KEGG: dia:Dtpsy_0241 arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase" /codon_start=1 /transl_table=11 /product="arginase" /protein_id="YP_004125045.1" /db_xref="GI:319761108" /db_xref="GO:0004053" /db_xref="GO:0046872" /db_xref="InterPro:IPR005924" /db_xref="InterPro:IPR006035" /db_xref="InterPro:IPR014033" /db_xref="InterPro:IPR020855" /db_xref="GeneID:10102403" /translation="MPPVTLIGAPTDVGASVLGASMGPDALRIAGIARALRTLEPDVQ DMGNLSGPGNPQAAPSGGFRHLAEVTAWSQAVFSAALAALDAGRLPLLMGGDHCLAIG SISAAARHCRLRGRRLKVLWLDAHADANTPASSPSGNLHGMPVACLLGHGPRQLTQLA GAAPALQARQITLLGVRSVDATEKRFVNAQGIEVYDMRSIDELGMRSVMQAALADVDE NTHLHLSFDMDGLDPTIAPGVGTPVRGGPTYRETQLCMEMLADSGALGSVDVMELNPA LDVRNQTAELAVDLLESLFGKSTLMRA" misc_feature complement(407317..408201) /locus_tag="Alide_0380" /note="Arginase family; Region: Arginase; cl00306" /db_xref="CDD:193759" gene complement(408230..408988) /locus_tag="Alide_0381" /db_xref="GeneID:10102404" CDS complement(408230..408988) /locus_tag="Alide_0381" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: aav:Aave_0304 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125046.1" /db_xref="GI:319761109" /db_xref="InterPro:IPR002781" /db_xref="GeneID:10102404" /translation="MEWIIVSLASLLAGFVDAIVGGGGLILVPALFATFTNAPPATLL GTNKSASICGTAMATWQYSRRVQMPWRAMLPAAGAGFTGSFFGAWTVTVVSADFLRKL LPLILLAVLLYTLAKKELGRHHEPRFAGRMETALACLIGLAIGFYDGFFGPGAGSFFV FAFVRLLGYDFLNASVSAKLLNLATNIAAIILFASKGHVWWHFALPLAVANVAGSLLG THMALRHGTGFVRAIFILVVSLLILKTGYDAFLR" misc_feature complement(408245..408988) /locus_tag="Alide_0381" /note="Predicted permeases [General function prediction only]; Region: COG0730; cl00498" /db_xref="CDD:186038" misc_feature complement(408257..408967) /locus_tag="Alide_0381" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene complement(409235..410917) /locus_tag="Alide_0382" /db_xref="GeneID:10102405" CDS complement(409235..410917) /locus_tag="Alide_0382" /EC_number="1.1.99.1" /inference="protein motif:PRIAM:1.1.99.1" /note="KEGG: ajs:Ajs_0249 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase" /codon_start=1 /transl_table=11 /product="choline dehydrogenase" /protein_id="YP_004125047.1" /db_xref="GI:319761110" /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR007867" /db_xref="InterPro:IPR012132" /db_xref="GeneID:10102405" /translation="MSDTTFDYIIIGGGTAGALLANRLSADPRSRVLLVEAGRKDDYH WIHIPVGYLYCIGNPRTDWLYQTEPDAGLNGRSLRYPRGKTLGGCSSINGMIYMRGQA RDYDQWAQITGDDAWRWDNVLPAFRRHEDHWRLDRPGNADEAFERLHGNKRTGSTGEW RVDRQRLRWDILDAFAQAAQQAGIPATDDFNRGTNEGVGYFEVNQKNGWRWNTAKAFL RPTCYGRPNFELWTSAQATRLALERQPDGRLRCTGVQAWTGDEMVTAHAQRELILCAG AVNSPQLLQLSGIGSGALLKQHGIDVVLDLPGVGANLQDHLQIRAVYKVQNTPTLNQM AASLAGKAKIGLEYLLKRSGPMSMAPSQLGAFTRSRPGLPYPNLEYHVQPLSLEAFGE PLHGFPAFTASVCNLNPTSRGSVNIKSPDFRAAPAIEPNYLSTPEDRQVAADSLRLTR RIVAQPALAPYRPEEYKPGPQYQSDEELARLAGDIATTIFHPVGTTRMGHVDDPQAVL DPQMRVRDGRGGVVAGLRVVDAGAMPTITSGNTNSPTLMMAEMAAQWIRSAA" misc_feature complement(409247..410917) /locus_tag="Alide_0382" /note="choline dehydrogenase; Validated; Region: PRK02106" /db_xref="CDD:179368" misc_feature complement(409262..409693) /locus_tag="Alide_0382" /note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199" /db_xref="CDD:191229" gene 411136..412302 /locus_tag="Alide_0383" /db_xref="GeneID:10102406" CDS 411136..412302 /locus_tag="Alide_0383" /inference="protein motif:PFAM:PF02405" /note="PFAM: protein of unknown function DUF140; KEGG: ajs:Ajs_0250 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125048.1" /db_xref="GI:319761111" /db_xref="InterPro:IPR003453" /db_xref="InterPro:IPR017441" /db_xref="GeneID:10102406" /translation="MPHIRCSPEEAFVLTIMSALTPPSVVQDGTATPRALPQGDWVAA AFADRRAWRRLAAQLKACGPGHAWSLQGLARLDHVGAQVLWNHWGRAWPAQVDLSAAQ REMLERVARFSTPCAPAPPWRLADQIDRLGVLVLRALGHLADMVELVGQLLLDLLRLV RNPARAPWRDISGHVYQMGAKALHITALVGFLIGVVLAYLMSLQLRQFGAEAFIVNIL GISLIRELGPMLGAILVAGRSGSAITAQIGVMRVTEELDAMRVMGIAHGFRLVMPRAL ALGLAMPLIALWTTLAALAGGMLAADLTMGISSAYFLQALPAAVKVSNLWLAMAKSVV FGVFIALIGCHWGLRVKPNTQSLGEGTTASVVSAITMVIVVDALFAVAFKNLGF" misc_feature 411640..412284 /locus_tag="Alide_0383" /note="Domain of unknown function DUF140; Region: DUF140; cl00510" /db_xref="CDD:186046" gene 412305..413108 /locus_tag="Alide_0384" /db_xref="GeneID:10102407" CDS 412305..413108 /locus_tag="Alide_0384" /inference="protein motif:PFAM:PF00005" /note="KEGG: ajs:Ajs_0251 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125049.1" /db_xref="GI:319761112" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10102407" /translation="MPGTSPVVDIRGLATVFGKGDAAFTVHDDLQLAVDRGEILSLVG GSGTGKTVLLRHILGLTRPTRGSVTVLGRPAAELGGEGASSRVGMLFQQGALFSAFSV LDNIAFALRELGTLPHALVDAAAMVKLRLVGLKPEHATRMPADLSGGMVKRVALARAL IMDPPLLLLDEPTAGLDPNSSDEFCGLLRELHAALGLTVIMVTHDLDTLFALSTRVAV LADRHVITSGTPQQVARFDHPFVDHFFRGERGRRAMAQPPAAAPASKEA" misc_feature 412305..413057 /locus_tag="Alide_0384" /note="ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127" /db_xref="CDD:31324" misc_feature 412326..413036 /locus_tag="Alide_0384" /note="ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex...; Region: ABC_Org_Solvent_Resistant; cd03261" /db_xref="CDD:73020" misc_feature 412434..412457 /locus_tag="Alide_0384" /note="Walker A/P-loop; other site" /db_xref="CDD:73020" misc_feature order(412443..412448,412452..412460,412578..412580, 412812..412817,412914..412916) /locus_tag="Alide_0384" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73020" misc_feature 412569..412580 /locus_tag="Alide_0384" /note="Q-loop/lid; other site" /db_xref="CDD:73020" misc_feature 412740..412769 /locus_tag="Alide_0384" /note="ABC transporter signature motif; other site" /db_xref="CDD:73020" misc_feature 412800..412817 /locus_tag="Alide_0384" /note="Walker B; other site" /db_xref="CDD:73020" misc_feature 412824..412835 /locus_tag="Alide_0384" /note="D-loop; other site" /db_xref="CDD:73020" misc_feature 412902..412922 /locus_tag="Alide_0384" /note="H-loop/switch region; other site" /db_xref="CDD:73020" gene 413108..414085 /locus_tag="Alide_0385" /db_xref="GeneID:10102408" CDS 413108..414085 /locus_tag="Alide_0385" /inference="protein motif:PFAM:PF02470" /note="PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein" /codon_start=1 /transl_table=11 /product="mammalian cell entry related domain protein" /protein_id="YP_004125050.1" /db_xref="GI:319761113" /db_xref="InterPro:IPR003399" /db_xref="GeneID:10102408" /translation="MENKSHALAAGIFVIVVAALLAGLGMWLTRDQTAYQIYELSSKD SVSGLQPQAPVRYKGVAVGKVTRIGFDPEAPGNVLIRIAVNTTAPISTTTFATLGYQG VTGLAHVQLDDADAPLPQPAPGASGLPRLPLQTSTFSQVAEQGPAIMAQVQQATERIN TLLGDENQQRFATALQQLGAAAGSIDQLVRHLDNTVSTRLDPALAGVPALTQDAQQTL HALRQAGSSAAGAADEVRQAVRALNAEGGALAEIASGAKSLTTAADRFGRVTLPSLNR AADETARAARRLGRTATGINDNPQSLIYGPGRAAAAPGEPGFVAPPNQP" misc_feature 413108..>413932 /locus_tag="Alide_0385" /note="ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463" /db_xref="CDD:31652" misc_feature 413237..>413362 /locus_tag="Alide_0385" /note="mce related protein; Region: MCE; cl03606" /db_xref="CDD:186584" gene 414096..414776 /locus_tag="Alide_0386" /db_xref="GeneID:10102409" CDS 414096..414776 /locus_tag="Alide_0386" /inference="protein motif:PFAM:PF03886" /note="PFAM: protein of unknown function DUF330; KEGG: ajs:Ajs_0253 lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125051.1" /db_xref="GI:319761114" /db_xref="InterPro:IPR005586" /db_xref="GeneID:10102409" /translation="MKTIETIAVCACWKGARAVFCMMLAALAAGCSVLPAPPVRADVY DFGPGPMQPAGDAQAAVPLAPIVLAAVDTVGMPEGSSALLYRLAYANVQQLRPYTQAR WSQPPADLLAQALRERLGQRRMVLSGDGGAALQLDQIRQASVLRVQLEEFSQIFSTPD ASTGLVRVRAMLADAGPAGEALQAQRVFIARRPAATPDAAGGARALAEAAAQVADELA HWVQQQGR" sig_peptide 414096..414221 /locus_tag="Alide_0386" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.861) with cleavage site probability 0.728 at residue 42" gene complement(414823..415029) /locus_tag="Alide_0387" /pseudo /db_xref="GeneID:10102410" gene 415230..416159 /locus_tag="Alide_0388" /db_xref="GeneID:10102411" CDS 415230..416159 /locus_tag="Alide_0388" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_6198 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125052.1" /db_xref="GI:319761115" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102411" /translation="MGESGPLPHSPFPSVARRIDPYSLRLFVATAQAGSIVRAAQQEH IAASALGRRLSDLEHAFGTPLLVRSPRGIALTDAGRLVLARGRKIDDDLQALVREVQT EGDEVRGTVRLYANMSSVVGFLPERLKRFMAAYPQVAVSLHEEDTQQVVRACLDDRAD VGVGAQMAVPAGLDAWHFAQDPLHVVMPAGHPLAAQAAVGFGQVLGHALIGVRQGGAL DRTMHERAQALGQRFAPAVSVGSFDAVCRMVEAGLGIALIPRSAAAAYAGSATFALRP LDEPWAARSLHLYALHRSPQPRAVQALLDCLRG" misc_feature 415284..416153 /locus_tag="Alide_0388" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 415299..415469 /locus_tag="Alide_0388" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 415557..416150 /locus_tag="Alide_0388" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature order(415602..415607,415611..415616,415623..415625, 415635..415637,415641..415661,415935..415952, 415968..415973,415977..415982) /locus_tag="Alide_0388" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 416240..418249 /locus_tag="Alide_0389" /db_xref="GeneID:10102412" CDS 416240..418249 /locus_tag="Alide_0389" /inference="protein motif:PFAM:PF00694" /note="PFAM: aconitate hydratase domain-containing protein; KEGG: cti:RALTA_B0856 hydrolyase" /codon_start=1 /transl_table=11 /product="aconitate hydratase domain-containing protein" /protein_id="YP_004125053.1" /db_xref="GI:319761116" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR001030" /db_xref="GeneID:10102412" /translation="MATDVSPSCGAAPAALRFNPRMLFLSRSPAPIHAALRGEPVALA AALPLRDDVSTDEITPIAILTHYDEKLGRYPYTGLQVQGQRPVAPGALARSGIEVVVA GKRYGKGSSREHSPAAERLAGVRLVIAESFERIYRQNADNIGLLTSTDMGLVQRIAAG EAIALEELLVGRDALAAAIVRSGGLLRFGQACLRGMRPAPVPTAPAAPGPRTLFEKIV ARHALATAFTPAHPAAGEGAFVRADWRFIHEYYTGMAAHMLHASLGRPLALRDPASIV VFEDHTSYVEESPAHVRGGLVPDVRRMVDAQRRFVADHGLRCHRTLTEAEAARDDGSN VAGISHAMVTERYALPGQLVVGTDSHTPHSGALGCAAFGVGTTDMANAFVTGAVRMTL PASLRVELDGRLAPGVTAKDVALHLLALPFIREGGGVGKVFEFAGAAIAAMSTDERAT LTNMTAELGGFTGIVAPDAETVRFLRERRGVDFAPESWMRSDPGAHYAHVIRVDCAQV GPMVAAPGDPGNGQPLARLARPVRIDIAYGGSCTAGKREDFDHYHAVLRWAADRGLRV APGVALYLQFGTTAVRDHCAAAGYLDAFERVGARILQPSCGACGNCGPGGSSDPGQVT VSAINRNFPGRGGPGSVWLASPPTVAASAIAGEILSFEELQARHA" misc_feature 416384..>416686 /locus_tag="Alide_0389" /note="Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme...; Region: Aconitase_swivel; cl00215" /db_xref="CDD:185833" misc_feature 416567..416575 /locus_tag="Alide_0389" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73200" misc_feature 416873..418213 /locus_tag="Alide_0389" /note="3-isopropylmalate dehydratase large subunit; Reviewed; Region: PRK00402" /db_xref="CDD:179006" misc_feature 417047..418213 /locus_tag="Alide_0389" /note="Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle; Region: Aconitase; cl00285" /db_xref="CDD:185883" misc_feature order(417311..417316,418067..418069,418127..418129, 418142..418144) /locus_tag="Alide_0389" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153129" misc_feature order(417317..417319,417860..417862,418055..418057, 418064..418069,418124..418126) /locus_tag="Alide_0389" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153129" gene 418287..419276 /locus_tag="Alide_0390" /db_xref="GeneID:10102413" CDS 418287..419276 /locus_tag="Alide_0390" /inference="similar to AA sequence:KEGG:RALTA_B0858" /note="KEGG: cti:RALTA_B0858 conserved hypothetical protein; UPF0065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125054.1" /db_xref="GI:319761117" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102413" /translation="MQTFPLTRRAALACMAASAFVLAPPGAAAQFAASDKPVRMVVPL APGSTVDAVARALGPGLGRALGRPMVVENVAGAGGIPGTGQVVKAPKDGSVLGMVSSN HVINPGIYKSIPYDSLKDITPIAVLATVPLVLVVHPSVPVKTVGELLAYARARPGTLN LGSAGNGSTLHLAGELLVSETGIDIRHVPYRGTGPLVTDLMGGQVQMGFVSVSQVAAQ VKAGTLRALAVSTRQRSASLPDVPTMAEAGVPNYGFDAWIALIGPAGMPRPVVDGYAA AVRSAMASPEAHAAIVGQGLSVLDIGPDAAPAFFQSELHKHQKLVKQSGATLD" sig_peptide 418287..418373 /locus_tag="Alide_0390" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.598 at residue 29" misc_feature 418389..419261 /locus_tag="Alide_0390" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 418494..419264 /locus_tag="Alide_0390" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 419285..419818 /locus_tag="Alide_0391" /db_xref="GeneID:10102414" CDS 419285..419818 /locus_tag="Alide_0391" /inference="protein motif:TFAM:TIGR01935" /note="KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA; TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase" /codon_start=1 /transl_table=11 /product="regulator of ribonuclease activity a" /protein_id="YP_004125055.1" /db_xref="GI:319761118" /db_xref="GO:0008428" /db_xref="InterPro:IPR005493" /db_xref="InterPro:IPR010203" /db_xref="GeneID:10102414" /translation="MASEQAPIRPGESTADLCDRLGPLARVCGAPLRAYGGLRQACAP VATLCAQGSADGVRAWLEQPGEGRILVIDGGVPEHALLGDRLAALGLANGWRGAIVHG AVRDVAALAGLDFAVLALGATPRRAAGGGAGAPGCTLELAGVRVAPGDWACLDRDGVV FVSARPGWETACSTRRP" misc_feature 419324..419782 /locus_tag="Alide_0391" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene complement(419769..420404) /locus_tag="Alide_0392" /db_xref="GeneID:10102415" CDS complement(419769..420404) /locus_tag="Alide_0392" /inference="protein motif:PFAM:PF01914" /note="PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dia:Dtpsy_0253 multiple antibiotic resistance (MarC)-related protein" /codon_start=1 /transl_table=11 /product="multiple antibiotic resistance (marc)-related protein" /protein_id="YP_004125056.1" /db_xref="GI:319761119" /db_xref="InterPro:IPR002771" /db_xref="GeneID:10102415" /translation="MDLKPLITLLAIVNPLAIVPFFIHYTNGFSAAQRRRTIQVAAFS AFCVIAACALVGLQILDFFNISLQSFQVGGGLLLLISAMNMLNAQPAEAKPHTNELEA GAQKAAQGSSIAVVPLTIPLLTGPAAMSTVVIYADRAQTLWQHLALVGYGVVVGAATA LCFALAEPIERALGKTGINVMTRLMGLILAALSVEVMADGLSKLFPILAAR" misc_feature complement(419775..420398) /locus_tag="Alide_0392" /note="MarC family integral membrane protein; Region: MarC; cl00919" /db_xref="CDD:186259" gene 420518..421207 /locus_tag="Alide_0393" /db_xref="GeneID:10102416" CDS 420518..421207 /locus_tag="Alide_0393" /EC_number="3.1.1.45" /inference="protein motif:PRIAM:3.1.1.45" /note="KEGG: dia:Dtpsy_0255 carboxymethylenebutenolidase" /codon_start=1 /transl_table=11 /product="carboxymethylenebutenolidase" /protein_id="YP_004125057.1" /db_xref="GI:319761120" /db_xref="GeneID:10102416" /translation="MGQWVDLTSGDGFVFPAWVARTDGAPRGAVVVLQEIFGVNTHIR SVADRFAARGYLAVAPSTFARVQKDVDLGYGPEDMQAGMALKAAVEGLPAPGVLPDIQ AAINYAARQSGRKVGVVGYCWGGLLAWRAACLAEGLSAAVPYYGGGITSAEEVARRPR VPVLAHFGERDRWITQDGVQAFAQAHPEAQVHVYPADHGFNCDQRASYDEAAALNARE RTMAFLARYVG" misc_feature 420560..421198 /locus_tag="Alide_0393" /note="Dienelactone hydrolase family; Region: DLH; pfam01738" /db_xref="CDD:190087" gene complement(421271..422839) /locus_tag="Alide_0394" /db_xref="GeneID:10102417" CDS complement(421271..422839) /locus_tag="Alide_0394" /inference="protein motif:TFAM:TIGR00711" /note="KEGG: dia:Dtpsy_0256 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="drug resistance transporter, emrb/qaca subfamily" /protein_id="YP_004125058.1" /db_xref="GI:319761121" /db_xref="InterPro:IPR004638" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10102417" /translation="MASPAHPAPLPPPPLTGSARTWGTLALSAATFMNVLDTSIANVS LPAIAGDLGVSPTQGTWVITSFAVANAIAVPLTGWLSQRFGQVRLFVASVTLFVIASL LCGLAPNMAMLIAARALQGFVAGPMIPLSQSLLLSSYPRALAGLAMAMWSMTTLIAPV TGPLLGGWITDNMAWPWIFYINVPVGIVAVLVTWGIFHKRETVRRKLPIDSIGLALLV IWVGAMQIMLDIGKEHDWFESPWVVACALVAAVGLVAFLIWERGDDHPVVDLTLFRNR NFWAGALATAVGYGLFFGNVVLLPLWLQQYMGYTATQAGEVMAPVGLLAMVLSPWVGK NIGRTDPRRFATFAFLVFALVLWMRSNFNTQADLATIMVPTIVQGIAMAFFFIPLVTV TLSEITPDRIPAASGLSNFMRITAGAVGTSIATTLWERRATLHHAQLTEGLHHGNTAL AQALQGLQVGGFTPEQALAQVERLVNQQAFMLAANDIFYASAVLFLFLIPLVWLAHAP HASKGSADAAAGAH" misc_feature complement(421325..422770) /locus_tag="Alide_0394" /note="drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711" /db_xref="CDD:129794" misc_feature complement(<422258..422770) /locus_tag="Alide_0394" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(422363..422365,422381..422386, 422393..422398,422432..422434,422441..422446, 422453..422458,422465..422470,422606..422611, 422615..422620,422630..422632,422639..422644, 422651..422653,422702..422707,422711..422719, 422726..422728)) /locus_tag="Alide_0394" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature complement(421553..>422032) /locus_tag="Alide_0394" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(422842..424041) /locus_tag="Alide_0395" /db_xref="GeneID:10102418" CDS complement(422842..424041) /locus_tag="Alide_0395" /inference="protein motif:PFAM:PF00529" /note="PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein" /codon_start=1 /transl_table=11 /product="secretion protein hlyd family protein" /protein_id="YP_004125059.1" /db_xref="GI:319761122" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10102418" /translation="MNAPQSPAAKPARRQALLTLAGVVVLAGAAWGLYDWLVASHYEN TDNAYVQGNVIQITPQTGGTVTAILADETDLVRAGSALVRLDPADARVALQQAEAALA QAVRQARQLYANNATLAAQVRLREADVARAQADIARAQDDLRRRQMLTGDGAVSKEEL QHAQSQLDTARTQLAAAQAGVAAAREQLASNQALTQGVAVQEHPSVRAAAAKVREAYL ADRRTALPAPVDGYVAKRSVQLGQRVAAGTPLMAIVPLSQVWVDANFKENQLRHLRLG QPAKLTADLYGKKVEYTGTVAGLGVGTGAAFALLPAQNATGNWIKVVQRVPVRIALDA AQLAEHPLRVGLSMEVTVDTKERGGPALAEAPRQEAVAQTAVYASLDEGADADVARII NANLGAR" misc_feature complement(422851..424038) /locus_tag="Alide_0395" /note="multidrug efflux system protein EmrA; Provisional; Region: PRK15136" /db_xref="CDD:185090" gene complement(424076..425497) /locus_tag="Alide_0396" /db_xref="GeneID:10102419" CDS complement(424076..425497) /locus_tag="Alide_0396" /inference="protein motif:TFAM:TIGR01845" /note="KEGG: dia:Dtpsy_0258 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="rnd efflux system, outer membrane lipoprotein, nodt family" /protein_id="YP_004125060.1" /db_xref="GI:319761123" /db_xref="GO:0005215" /db_xref="GO:0008289" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR010131" /db_xref="GeneID:10102419" /translation="MKNQLSTPPALLHAAALAAALLALTGCADMSGIAPQARLRDAAT LVDPGAPAAAVAPDWWRAFGDAQLDALVQQALDGNPGLRQAAARIARAEAFTRSARAA LGPQVNASADLTRQRYSENGPYPPGQAGSILDIDTARLSGSWEIDFFGKNRAALESAL GTARAARADADAARLLLAANVVHAYLQLARLQEQLQVAERTLAQRGEVLRLVQQRVSA GLDTRLELRQSEGALPEARQQIEALREQAALTRNALGALAGEPKAALALTPPALAAMQ SAAIPAVLPADLLGRRPDVAAARWRVEASAQDVAVARAQFYPNVSLTAFVGLASMGLG NFVEAGSREWGVGPALRLPVFDAGRLRANLAGKSADLDAAVESYNAALLDAVRDAADQ LASSASVERQIAEQRQAGEAAEAAYAIARKRYEAGLGNYLQVLSAETQVLAQRRLAVD LAARRLDAQAGVMRALGGGYAAS" sig_peptide complement(425411..425497) /locus_tag="Alide_0396" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.778) with cleavage site probability 0.462 at residue 29" misc_feature complement(424091..425323) /locus_tag="Alide_0396" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature complement(424721..425296) /locus_tag="Alide_0396" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(<424364..424627) /locus_tag="Alide_0396" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(425527..426039) /locus_tag="Alide_0397" /db_xref="GeneID:10102420" CDS complement(425527..426039) /locus_tag="Alide_0397" /inference="protein motif:PFAM:PF01047" /note="KEGG: ajs:Ajs_0264 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR" /codon_start=1 /transl_table=11 /product="regulatory protein marr" /protein_id="YP_004125061.1" /db_xref="GI:319761124" /db_xref="GO:0003700" /db_xref="InterPro:IPR000835" /db_xref="GeneID:10102420" /translation="MKSPREEDDPAGDGTCPLSDPSLPVPFEVERSIGFQLRRITTLL GAEVERRMEPLGLTDAQWKPLLRLLLDPPGTAAALARMCHLDAGGLTRLLDRLEAKGL CQRERSLEDRRVVNIALTPEGRAVAERLPAILTGVQDELLAGFSEAEEAQLRDFLARI YANTRAMPGS" misc_feature complement(425554..425928) /locus_tag="Alide_0397" /note="Transcriptional regulators [Transcription]; Region: MarR; COG1846" /db_xref="CDD:32031" misc_feature complement(425593..425892) /locus_tag="Alide_0397" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(426111..427286) /locus_tag="Alide_0398" /db_xref="GeneID:10102421" CDS complement(426111..427286) /locus_tag="Alide_0398" /inference="protein motif:PFAM:PF01544" /note="PFAM: Mg2 transporter protein CorA family protein; KEGG: dia:Dtpsy_0260 Mg2 transporter protein CorA family protein" /codon_start=1 /transl_table=11 /product="mg2 transporter protein cora family protein" /protein_id="YP_004125062.1" /db_xref="GI:319761125" /db_xref="GO:0046873" /db_xref="InterPro:IPR002523" /db_xref="GeneID:10102421" /translation="MPEKSPQPFRVFHLQPGVGASELAQLPGTPPAQGFYWIACTRAA FSAELPRLQAMLQAVAGLQLVDLHVSDLLNAQLPSHYDYTSQYDLLVVRRLGTAQADA GAPLARPAARGGLPVLRRIDTSPVGFAVFDQVLLSVHPGDCGVRDAYAARLLSQAAPA APAATPAEAVVRELRAGPVAGARLPTSPADLMVRVVGHIVDNYLDLRRELSRQLDHWQ TELLRPSTRFTDWSALLGARLALHQLDEICEDQRAAVQAWSEALSTWTPQPDTPAALR ELDLLKVRTRDVLEHIERVVHHVRRLEQSTEAVLQMHFSVQSNRTNDIMRTLTVLTAV FLPLNLIAGIFGMNFEFIPFVHTREGFWWAMGSMAAIAAALTVFFWRKRYLTRTGRS" misc_feature complement(426144..427190) /locus_tag="Alide_0398" /note="CorA-like Mg2+ transporter protein; Region: CorA; pfam01544" /db_xref="CDD:144948" misc_feature complement(426132..>426443) /locus_tag="Alide_0398" /note="magnesium/nickel/cobalt transporter CorA; Provisional; Region: PRK11085; cl00459" /db_xref="CDD:187900" gene complement(427326..428354) /locus_tag="Alide_0399" /db_xref="GeneID:10102422" CDS complement(427326..428354) /locus_tag="Alide_0399" /EC_number="4.2.1.24" /inference="protein motif:PRIAM:4.2.1.24" /note="KEGG: ajs:Ajs_0266 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase" /codon_start=1 /transl_table=11 /product="porphobilinogen synthase" /protein_id="YP_004125063.1" /db_xref="GI:319761126" /db_xref="InterPro:IPR001731" /db_xref="GeneID:10102422" /translation="MWGTITPMHLSSPTPFPANRPRRLRRDAFTRDLVRENRLTPHDF IYPVFVHEGTQLRVPVPSMPGVERLSLDLLLPVAGECVRLGIPYLALFPSIDAQLKTP DGKEALNPEGLIPRVVRALKKEFPQLGVMTDVALDPYTSHGQDGMLDDTGYILNDETV EILVGQALAHAQAGVDMVAPSDMMDGRIGAIRDALEAHGHIHTRIMAYSAKYASAFYG PFRDAVGSAANLGRSNKDVYQMDPANTDEALREVALDLAEGADMVMVKPGMPYLDVLR RVKDEFKVPTFAYQVSGEYAMLKAAAANGWLDHDKVMLEALLAFKRAGADGILTYFAL DAARLLTK" misc_feature complement(427335..428297) /locus_tag="Alide_0399" /note="Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS_aspartate_rich; cd04823" /db_xref="CDD:88599" misc_feature complement(order(427389..427391,427398..427400, 427410..427412,427419..427421,427464..427466, 427536..427550,427602..427607,427614..427616, 427623..427634,427641..427646,427707..427715, 427800..427805,427884..427889,428163..428165, 428172..428174,428244..428252,428277..428282, 428289..428297)) /locus_tag="Alide_0399" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88599" misc_feature complement(order(427590..427592,427602..427604, 427800..427802,428295..428297)) /locus_tag="Alide_0399" /note="allosteric magnesium binding site [ion binding]; other site" /db_xref="CDD:88599" misc_feature complement(order(427362..427364,427479..427481, 427488..427490,427557..427559,427638..427640, 427650..427652,427677..427679,427692..427697, 427704..427706,427722..427724,427812..427814, 427920..427922,427944..427946,427950..427952, 427956..427958)) /locus_tag="Alide_0399" /note="active site" /db_xref="CDD:88599" misc_feature complement(order(427809..427811,427920..427922, 427944..427946)) /locus_tag="Alide_0399" /note="aspartate-rich active site metal binding site; other site" /db_xref="CDD:88599" misc_feature complement(order(427557..427559,427722..427724)) /locus_tag="Alide_0399" /note="Schiff base residues; other site" /db_xref="CDD:88599" gene 428387..429109 /locus_tag="Alide_0400" /db_xref="GeneID:10102423" CDS 428387..429109 /locus_tag="Alide_0400" /inference="protein motif:PFAM:PF03099" /note="PFAM: biotin/lipoate A/B protein ligase; KEGG: dia:Dtpsy_0262 biotin/lipoate A/B protein ligase" /codon_start=1 /transl_table=11 /product="biotin/lipoate a/b protein ligase" /protein_id="YP_004125064.1" /db_xref="GI:319761127" /db_xref="GO:0003824" /db_xref="InterPro:IPR004143" /db_xref="GeneID:10102423" /translation="MSDPQTFLTTIAQEQAWNHRQMLEPVAQPHFRVWTYGAPAIVLG CSQRRFEEEARARLAPGTDLLLRPSGGGAVLVGPWMVSCSVVLPLDHPWVQGRLPDSY QGLGRLHVQVLAALGVAAEALPPAQVDAANARTGPVVPWACYGSLAPWEVVDAAGRKL VGLAQRRQRTGVLLVAGTLVTPPDWALLCHALGQSGDEAAMRRRTVSCSQLGAPAPDA QRLARALHEVLGSGLAPAACRC" misc_feature 428477..>428926 /locus_tag="Alide_0400" /note="Lipoate-protein ligase A [Coenzyme metabolism]; Region: LplA; COG0095" /db_xref="CDD:30444" gene 429257..429685 /locus_tag="Alide_0401" /db_xref="GeneID:10102424" CDS 429257..429685 /locus_tag="Alide_0401" /inference="protein motif:PFAM:PF03653" /note="PFAM: Uncharacterised protein family UPF0093; KEGG: dia:Dtpsy_0263 hypothetical protein" /codon_start=1 /transl_table=11 /product="uncharacterized protein family upf0093" /protein_id="YP_004125065.1" /db_xref="GI:319761128" /db_xref="InterPro:IPR005265" /db_xref="GeneID:10102424" /translation="MLWVKAFHIVFIASWFAGLFYLPRIFVNLAMVQPGSVAERDRLL LMARKLLRFTTLLALPAIGLGLWLWLGYGIGMGPGNGWLHAKLAVVVLVVLYHWVCAR LLRALTDNTDQHGHRWFRWFNELPVLLLIAAVVLVVVKPF" misc_feature 429260..429682 /locus_tag="Alide_0401" /note="Uncharacterised protein family (UPF0093); Region: UPF0093; cl00863" /db_xref="CDD:193956" gene 429711..430808 /locus_tag="Alide_0402" /db_xref="GeneID:10102425" CDS 429711..430808 /locus_tag="Alide_0402" /inference="protein motif:PFAM:PF04892" /note="PFAM: VanZ family protein; KEGG: ajs:Ajs_0269 VanZ family protein" /codon_start=1 /transl_table=11 /product="vanz family protein" /protein_id="YP_004125066.1" /db_xref="GI:319761129" /db_xref="InterPro:IPR006976" /db_xref="GeneID:10102425" /translation="MHKTSAWPLALIYAALIVFASLFPFEGWREQGISPWVFFTARIP PPYWTWFDVNLNVAGYAPLGFLLALALLRTGWPRAAVPVAALAGALLSFAMEYLQIYL PRRVPSNMDLALNAAGALLGALAAALLERLGAIARWSRFRELWFVPQARGALVLLALW PWALLFPAALPFGLGQVWDRLEAALTELLEDTPFIGWLPVREPVLEPLSPGGELLAVA LGLLIPCLLGYGVMRHVGRRVVFALAAATVGVAVTALSALLSYGPTHAWEWLTPAARA GLGVGLGAALALAAVPRRASAALLLLALMLHLNLLNEAPASAYFAQTLQAWEQGRFIR FYGLGQWLGWLWPYAALMYVVLHVSRRDTQS" sig_peptide 429711..429773 /locus_tag="Alide_0402" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.691) with cleavage site probability 0.679 at residue 21" gene 430818..431159 /locus_tag="Alide_0403" /db_xref="GeneID:10102426" CDS 430818..431159 /locus_tag="Alide_0403" /inference="similar to AA sequence:KEGG:Dtpsy_0265" /note="KEGG: dia:Dtpsy_0265 ferredoxin-like protein" /codon_start=1 /transl_table=11 /product="ferredoxin-like protein" /protein_id="YP_004125067.1" /db_xref="GI:319761130" /db_xref="GeneID:10102426" /translation="MSDTTTPYYQRHIFFCLNERSNGENCCAQHGAQQAFERCKMLVK QQGLMGPGKVRVNKAGCMDRCAGGPIAVVYPEGVWYTYVDEADIDEIVESHLKNGVVV ERLRTPPELGR" misc_feature 430848..431102 /locus_tag="Alide_0403" /note="Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:; Region: TRX_Fd_family; cd02980" /db_xref="CDD:48529" misc_feature order(430851..430853,430857..430859,430989..430997) /locus_tag="Alide_0403" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48529" misc_feature order(430863..430865,430896..430898,430998..431000, 431010..431012) /locus_tag="Alide_0403" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48529" gene 431243..431878 /locus_tag="Alide_0404" /db_xref="GeneID:10102427" CDS 431243..431878 /locus_tag="Alide_0404" /inference="similar to AA sequence:KEGG:Dtpsy_0266" /note="KEGG: dia:Dtpsy_0266 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004125068.1" /db_xref="GI:319761131" /db_xref="GeneID:10102427" /translation="MNAQTERLSLTGPAGAIEAVRDAPVAGAPVRGVAVIAHPHPLFG GTMDNKVVQTLARAFVASGFAAVRFNFRGVGGTAGVHDAGDGELDDLLGVVRQVAPEG PVALAGFSFGAFVTSHALARLWGERRVESAVLVGTATSRFTVAPLPPEAHMRTLVVHG EHDETVPLATVMDWARPQTLPVTVVPGGGHFFHGQLPLLKGLVMRHLQSMP" misc_feature 431255..431863 /locus_tag="Alide_0404" /note="Predicted hydrolase of the alpha/beta superfamily [General function prediction only]; Region: COG2945" /db_xref="CDD:32768" misc_feature <431537..431833 /locus_tag="Alide_0404" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 431980..433143 /locus_tag="Alide_0405" /db_xref="GeneID:10102428" CDS 431980..433143 /locus_tag="Alide_0405" /EC_number="3.5.2.6" /inference="protein motif:PRIAM:3.5.2.6" /note="KEGG: ajs:Ajs_0272 penicillin-binding protein 6; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_004125069.1" /db_xref="GI:319761132" /db_xref="InterPro:IPR001967" /db_xref="InterPro:IPR012907" /db_xref="InterPro:IPR018044" /db_xref="GeneID:10102428" /translation="MKSLLSSLRSLACAALMAPAILWAQAPQPPEIAARNYLLVDVTA GQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPGSRMFI DPKMQVPVDDLLKGMIVQSGNDATMALAEGVGGTAENFVRLMNEQAKALGMKNTAYKN PEGLTEPGHTTTARDLATLATRLIQDFPEYMHYYSTKQYRYEGTPASNSNNRNTLLFR DPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLSIVLGAASENSRANESQKLLNW GYTAFDAVKLFDAGQAADTPAVWKGTQSTLKIGRPDAIVVTVPSGSAGKLSTEIVRKD PLIAPFTKGQPIGALKVRLGGEQVAEVPLVALEDVGQAGIFGRAWDAIRLWIK" sig_peptide 431980..432054 /locus_tag="Alide_0405" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" misc_feature 432049..433140 /locus_tag="Alide_0405" /note="D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: DacC; COG1686" /db_xref="CDD:31872" misc_feature 432055..432807 /locus_tag="Alide_0405" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" misc_feature 432820..433092 /locus_tag="Alide_0405" /note="Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; pfam07943" /db_xref="CDD:191901" gene 433245..433622 /locus_tag="Alide_0406" /db_xref="GeneID:10102429" CDS 433245..433622 /locus_tag="Alide_0406" /inference="protein motif:TFAM:TIGR00981" /note="KEGG: dia:Dtpsy_0268 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23" /codon_start=1 /transl_table=11 /product="ribosomal protein s12" /protein_id="YP_004125070.1" /db_xref="GI:319761133" /db_xref="GO:0003735" /db_xref="InterPro:IPR005679" /db_xref="InterPro:IPR006032" /db_xref="GeneID:10102429" /translation="MPTINQLVRQGRTVEVVKSKSPAMENCPQRRGVCTRVYTTTPKK PNSALRKVAKVRLTNGFEVISYIGGEGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGSL DLQGVKDRKQARSKYGAKRPKKA" misc_feature 433251..433574 /locus_tag="Alide_0406" /note="S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368" /db_xref="CDD:48341" misc_feature order(433254..433259,433263..433268,433275..433280) /locus_tag="Alide_0406" /note="S17 interaction site [polypeptide binding]; other site" /db_xref="CDD:48341" misc_feature 433254..433256 /locus_tag="Alide_0406" /note="S8 interaction site; other site" /db_xref="CDD:48341" misc_feature order(433278..433286,433320..433322,433326..433331, 433335..433337,433380..433385,433389..433397, 433416..433418,433440..433442,433449..433454, 433491..433496,433506..433511,433572..433574) /locus_tag="Alide_0406" /note="16S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:48341" misc_feature order(433371..433376,433506..433508) /locus_tag="Alide_0406" /note="streptomycin interaction site [chemical binding]; other site" /db_xref="CDD:48341" misc_feature 433374..433379 /locus_tag="Alide_0406" /note="23S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:48341" misc_feature order(433377..433394,433452..433478) /locus_tag="Alide_0406" /note="aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site" /db_xref="CDD:48341" gene 433786..434259 /locus_tag="Alide_0407" /db_xref="GeneID:10102430" CDS 433786..434259 /locus_tag="Alide_0407" /inference="protein motif:TFAM:TIGR01029" /note="KEGG: dia:Dtpsy_0269 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7" /codon_start=1 /transl_table=11 /product="ribosomal protein s7" /protein_id="YP_004125071.1" /db_xref="GI:319761134" /db_xref="GO:0003735" /db_xref="InterPro:IPR000235" /db_xref="InterPro:IPR005717" /db_xref="InterPro:IPR020606" /db_xref="GeneID:10102430" /translation="MPRRREVPKREILPDPKFGNVELSKFMNVIMEGGKKAVAERIIY GALELIEKKQPEKDALEVFVTAINNVKPMVEVKSRRVGGANYQVPVEVRPVRRLALSM RWIKEAARKRSEKSMAQRLANELMEATEGRGGAMKRRDEVHRMAEANKAFSHFRF" misc_feature 433786..434256 /locus_tag="Alide_0407" /note="Ribosomal protein S7p/S5e; Region: Ribosomal_S7; cl00313" /db_xref="CDD:193762" gene 434346..436454 /locus_tag="Alide_0408" /db_xref="GeneID:10102431" CDS 434346..436454 /locus_tag="Alide_0408" /inference="protein motif:TFAM:TIGR00484" /note="KEGG: ajs:Ajs_0275 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein" /codon_start=1 /transl_table=11 /product="translation elongation factor g" /protein_id="YP_004125072.1" /db_xref="GI:319761135" /db_xref="GO:0003746" /db_xref="GO:0005525" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004540" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR005517" /db_xref="GeneID:10102431" /translation="MARKTPLERYRNIGISAHIDAGKTTTSERILFYTGVTHKLGEVH DGAATTDWMEQEQERGITITSSAVTCFWKGMDLSRPEHRINIIDTPGHVDFTIEVERS MRVLDGAVMVYCAVGGVQPQSETVWRQANKHKVPRLAFVNKMDRTGANFFKVYDQMKL RLNANPVPIVVPIGAEDSFQGVVDLLKMKAIIWDEASQGMKFEYGEIPAELVDTCKKW RENMVEAAAEASEELMNKYLEEGDLSEAEIIAGLRQRTIATEIQPMLCGSAFKNKGVQ RMLDAVLDLLPSPVDIPDVAGTDPDDHEKHLTRKADDNEKFSALAFKLMTDPFVGQLT FVRVYSGVLNKGDTVYNAVKGKKERIGRIVQMHANERQEIEEIRAGDIAACVGLKEVT TGDTLCDLDAPIMLEKMVFPEPVIAQAVEPKSKADQEKMGIALSRLASEDPSFRVRSD EESGQTIIAGMGELHLEIIVDRMKREFGVEANVGKPQVAYRETIRNTVKDVDGKFVRQ SGGKGQYGHVVFRLEPNEPGKGFEFLDEIKGGVVPREYIPAVQKGVEEALTSGVLAGY PVVDVKVALTFGSYHDVDSSEQAFKMAAIFGFKEAAKKANPVILEPMMAVEVETPEDY AGTVMGDLSSRRGMVQGMDDMVGGGKAIKAEVPLSEMFGYATQLRSMTQGRATYTMEF KHYAEAPRNVAEAIIAARAK" misc_feature 434346..436451 /locus_tag="Alide_0408" /note="elongation factor G; Reviewed; Region: PRK00007" /db_xref="CDD:178789" misc_feature 434379..435212 /locus_tag="Alide_0408" /note="Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved...; Region: EF-G; cd01886" /db_xref="CDD:133286" misc_feature 434394..434417 /locus_tag="Alide_0408" /note="G1 box; other site" /db_xref="CDD:133286" misc_feature order(434397..434399,434403..434405,434415..434420, 434427..434429,434436..434441,434541..434546, 434619..434624,434691..434696,434802..434804, 434814..434816) /locus_tag="Alide_0408" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133286" misc_feature order(434403..434405,434409..434420,434769..434774, 434778..434780,435147..435155) /locus_tag="Alide_0408" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133286" misc_feature 434484..434543 /locus_tag="Alide_0408" /note="Switch I region; other site" /db_xref="CDD:133286" misc_feature 434529..434531 /locus_tag="Alide_0408" /note="G2 box; other site" /db_xref="CDD:133286" misc_feature 434607..434618 /locus_tag="Alide_0408" /note="G3 box; other site" /db_xref="CDD:133286" misc_feature 434613..434669 /locus_tag="Alide_0408" /note="Switch II region; other site" /db_xref="CDD:133286" misc_feature 434769..434780 /locus_tag="Alide_0408" /note="G4 box; other site" /db_xref="CDD:133286" misc_feature 435147..435155 /locus_tag="Alide_0408" /note="G5 box; other site" /db_xref="CDD:133286" misc_feature 435294..435542 /locus_tag="Alide_0408" /note="EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide...; Region: EFG_mtEFG_II; cd04088" /db_xref="CDD:58095" misc_feature 435813..436163 /locus_tag="Alide_0408" /note="EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor...; Region: EFG_mtEFG1_IV; cd01434" /db_xref="CDD:58274" misc_feature 436176..436412 /locus_tag="Alide_0408" /note="EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor...; Region: EFG_mtEFG_C; cd03713" /db_xref="CDD:58065" gene 436688..437878 /locus_tag="Alide_0409" /db_xref="GeneID:10102432" CDS 436688..437878 /locus_tag="Alide_0409" /inference="protein motif:TFAM:TIGR00485" /note="KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein" /codon_start=1 /transl_table=11 /product="translation elongation factor tu" /protein_id="YP_004125073.1" /db_xref="GI:319761136" /db_xref="GO:0003746" /db_xref="GO:0005525" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004160" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004541" /db_xref="InterPro:IPR005225" /db_xref="GeneID:10102432" /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAKKFGGEA KGYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGA ILVCSAADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLDK YEFPGDDTPIIRGSAKLALEGDQSDKGEPAILKLAEALDTYIPTPERAVDGTFLMPVE DVFSISGRGTVVTGRVERGIIKVGEEIEIVGIRETQKTTVTGVEMFRKLLDQGQAGDN VGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFY FRTTDVTGSIELPADKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVA KIIE" misc_feature 436688..437875 /locus_tag="Alide_0409" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:178823" misc_feature 436718..437302 /locus_tag="Alide_0409" /note="EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors; Region: EF_Tu; cd01884" /db_xref="CDD:133284" misc_feature 436742..436765 /locus_tag="Alide_0409" /note="G1 box; other site" /db_xref="CDD:133284" misc_feature order(436745..436747,436751..436753,436763..436768, 436775..436777,436784..436789,436799..436801, 436883..436888,436940..436945,437012..437017, 437021..437032,437039..437041,437132..437134, 437144..437146,437222..437227) /locus_tag="Alide_0409" /note="GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133284" misc_feature order(436751..436768,436826..436828,437093..437098, 437102..437104,437207..437215) /locus_tag="Alide_0409" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133284" misc_feature 436853..436885 /locus_tag="Alide_0409" /note="Switch I region; other site" /db_xref="CDD:133284" misc_feature 436871..436873 /locus_tag="Alide_0409" /note="G2 box; other site" /db_xref="CDD:133284" misc_feature 436928..436939 /locus_tag="Alide_0409" /note="G3 box; other site" /db_xref="CDD:133284" misc_feature 436934..436990 /locus_tag="Alide_0409" /note="Switch II region; other site" /db_xref="CDD:133284" misc_feature 437093..437104 /locus_tag="Alide_0409" /note="G4 box; other site" /db_xref="CDD:133284" misc_feature 437207..437215 /locus_tag="Alide_0409" /note="G5 box; other site" /db_xref="CDD:133284" misc_feature 437324..437584 /locus_tag="Alide_0409" /note="EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697" /db_xref="CDD:58088" misc_feature 437591..437860 /locus_tag="Alide_0409" /note="Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts)...; Region: EFTU_III; cd03707" /db_xref="CDD:58073" misc_feature order(437627..437629,437633..437641,437693..437695, 437813..437821,437849..437851) /locus_tag="Alide_0409" /note="Antibiotic Binding Site [chemical binding]; other site" /db_xref="CDD:58073" gene 437906..438217 /locus_tag="Alide_0410" /db_xref="GeneID:10102433" CDS 437906..438217 /locus_tag="Alide_0410" /inference="protein motif:TFAM:TIGR01049" /note="KEGG: vei:Veis_1263 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10" /codon_start=1 /transl_table=11 /product="ribosomal protein s10" /protein_id="YP_004125074.1" /db_xref="GI:319761137" /db_xref="GO:0003735" /db_xref="InterPro:IPR001848" /db_xref="InterPro:IPR005731" /db_xref="InterPro:IPR018268" /db_xref="GeneID:10102433" /translation="MSKQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAIVKGPVPLPT RMKRFDILRSPHVNKTSRDQLEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKL Q" misc_feature 437906..438211 /locus_tag="Alide_0410" /note="Ribosomal protein S10p/S20e; Region: Ribosomal_S10; cl00314" /db_xref="CDD:193763" gene 438434..439108 /locus_tag="Alide_0411" /db_xref="GeneID:10102434" CDS 438434..439108 /locus_tag="Alide_0411" /inference="protein motif:TFAM:TIGR03625" /note="KEGG: dia:Dtpsy_0273 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3" /codon_start=1 /transl_table=11 /product="50S ribosomal protein l3" /protein_id="YP_004125075.1" /db_xref="GI:319761138" /db_xref="GO:0003735" /db_xref="InterPro:IPR000597" /db_xref="InterPro:IPR019926" /db_xref="InterPro:IPR019927" /db_xref="GeneID:10102434" /translation="MSLSNSLGLLGRKVGMMRLFTDDGDAVPVTVVDVSNNRVTQVKT QENDGYVALQVTFGSRKASRVTKPEAGHLAKAGVEAGEIIREFPVTAEVAGKYAAGAT VPVADVFAVGQKVDVQGTSIGKGYAGTIKRHNFGSQRASHGNSRSHNVPGSIGMAQDP GRIFPGKKMTGHLGDATVTTQNLDVVRIDEARQLLLIKGAVPGSKGGFVTVRPAVKAK ASKGAN" misc_feature 438449..439090 /locus_tag="Alide_0411" /note="Ribosomal protein L3; Region: Ribosomal_L3; cl00324" /db_xref="CDD:189082" gene 439108..439728 /locus_tag="Alide_0412" /db_xref="GeneID:10102435" CDS 439108..439728 /locus_tag="Alide_0412" /inference="protein motif:PFAM:PF00573" /note="PFAM: ribosomal protein L4/L1e; KEGG: dia:Dtpsy_0274 50S ribosomal protein L4" /codon_start=1 /transl_table=11 /product="ribosomal protein l4/l1e" /protein_id="YP_004125076.1" /db_xref="GI:319761139" /db_xref="GO:0003735" /db_xref="InterPro:IPR002136" /db_xref="GeneID:10102435" /translation="MQLELLNEQGQAASKVDVPETVFDRQYNEDLIHQIVVAYQANAR QGTRAQKDREQVKHSTKKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKIN KKMYRAGMAAILSQLAREGRLAVVDSLKLESPKTKVLADKFKAMNLQSVMVIADEVDE NLYLASRNLKNVFVVEPRYADPVSLVHYKKVLVTKGAIDKLKEMFA" misc_feature 439108..439725 /locus_tag="Alide_0412" /note="Ribosomal protein L4/L1 family; Region: Ribosomal_L4; cl00325" /db_xref="CDD:197406" gene 439725..440039 /locus_tag="Alide_0413" /db_xref="GeneID:10102436" CDS 439725..440039 /locus_tag="Alide_0413" /inference="protein motif:PFAM:PF00276" /note="PFAM: Ribosomal protein L25/L23; KEGG: dia:Dtpsy_0275 50S ribosomal protein L23" /codon_start=1 /transl_table=11 /product="ribosomal protein l25/l23" /protein_id="YP_004125077.1" /db_xref="GI:319761140" /db_xref="GO:0003735" /db_xref="InterPro:IPR013025" /db_xref="GeneID:10102436" /translation="MSTLKFDEGRLMQVLVAPIVSEKATMVAEKSNAVTFKVLQNATK PEIKAAVELMFKVEVKGVSVVNTKGKTKRFGKTMGRRDNVRKAYVLLKEGQELNLSGE AA" misc_feature 439758..440033 /locus_tag="Alide_0413" /note="Ribosomal protein L23; Region: Ribosomal_L23; cl00326" /db_xref="CDD:185908" gene 440042..440866 /locus_tag="Alide_0414" /db_xref="GeneID:10102437" CDS 440042..440866 /locus_tag="Alide_0414" /inference="protein motif:TFAM:TIGR01171" /note="KEGG: dia:Dtpsy_0276 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2" /codon_start=1 /transl_table=11 /product="ribosomal protein l2" /protein_id="YP_004125078.1" /db_xref="GI:319761141" /db_xref="GO:0003723" /db_xref="GO:0003735" /db_xref="GO:0016740" /db_xref="InterPro:IPR002171" /db_xref="InterPro:IPR005880" /db_xref="GeneID:10102437" /translation="MAVIKLKPTTPGQRGTVKISRDHLYKGDAFAPLLEPQFQKAGRN NNGHITTRHKGGGHKHHYRVVDFRRNKDAIPAKVERIEYDPNRTAHIALVCYADGERR YIIAPRNLEVGASIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKPGAGAQIARSAGT SATLLAREGVYAQVRMRSGEVRRIHIECRATIGEVANEEHSLRQLGKAGVKRWMGIRP TVRGVAMNPIDHPHGGGEGRTGEGRHAVDPWGNLTKGYRTRNNKRTQTMIVSRRKK" misc_feature 440042..440863 /locus_tag="Alide_0414" /note="50S ribosomal protein L2; Validated; Region: rplB; PRK09374" /db_xref="CDD:181807" misc_feature 440165..440395 /locus_tag="Alide_0414" /note="Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181" /db_xref="CDD:109247" misc_feature 440411..440791 /locus_tag="Alide_0414" /note="Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947" /db_xref="CDD:146530" gene 440877..441152 /locus_tag="Alide_0415" /db_xref="GeneID:10102438" CDS 440877..441152 /locus_tag="Alide_0415" /inference="protein motif:TFAM:TIGR01050" /note="KEGG: dac:Daci_0395 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15" /codon_start=1 /transl_table=11 /product="ribosomal protein s19" /protein_id="YP_004125079.1" /db_xref="GI:319761142" /db_xref="GO:0003735" /db_xref="InterPro:IPR002222" /db_xref="InterPro:IPR005732" /db_xref="InterPro:IPR020934" /db_xref="GeneID:10102438" /translation="MTRSLKKGPFVDHHLLAKVEKAIATKDKKPVKTWSRRSMVLPEF IGLTIAVHNGKQHVPVYVTDQMVGHKLGEFALTRTFKGHPADKKAKK" misc_feature 440877..441149 /locus_tag="Alide_0415" /note="Ribosomal protein S19; Region: Ribosomal_S19; cl00350" /db_xref="CDD:185929" gene 441162..441494 /locus_tag="Alide_0416" /db_xref="GeneID:10102439" CDS 441162..441494 /locus_tag="Alide_0416" /inference="protein motif:TFAM:TIGR01044" /note="KEGG: dac:Daci_0396 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17" /codon_start=1 /transl_table=11 /product="ribosomal protein l22" /protein_id="YP_004125080.1" /db_xref="GI:319761143" /db_xref="GO:0003735" /db_xref="InterPro:IPR001063" /db_xref="InterPro:IPR005727" /db_xref="InterPro:IPR018260" /db_xref="GeneID:10102439" /translation="MSETRAVLRGVRLSVDKGRLVADLIRGKKVDQALDILTFTQKKA AGIVKKVLESAIANAEHNDGADIDELKVKTIFVEQGTTLKRFTARAKGRGNRISKPTC HIYVTVGN" misc_feature 441174..441485 /locus_tag="Alide_0416" /note="Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336" /db_xref="CDD:48343" misc_feature order(441174..441176,441240..441248,441252..441257, 441261..441266,441327..441344,441369..441386, 441480..441485) /locus_tag="Alide_0416" /note="putative translocon binding site; other site" /db_xref="CDD:48343" misc_feature order(441180..441182,441186..441188,441195..441197, 441201..441209,441216..441218,441228..441230, 441237..441239,441321..441323,441333..441335, 441342..441344,441381..441383,441387..441395, 441399..441401,441408..441410,441444..441461) /locus_tag="Alide_0416" /note="protein-rRNA interface [nucleotide binding]; other site" /db_xref="CDD:48343" gene 441512..442384 /locus_tag="Alide_0417" /db_xref="GeneID:10102440" CDS 441512..442384 /locus_tag="Alide_0417" /inference="protein motif:TFAM:TIGR01009" /note="TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: aav:Aave_0344 30S ribosomal protein S3; SMART: KH domain protein" /codon_start=1 /transl_table=11 /product="ribosomal protein s3" /protein_id="YP_004125081.1" /db_xref="GI:319761144" /db_xref="GO:0003735" /db_xref="InterPro:IPR001351" /db_xref="InterPro:IPR004044" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR005704" /db_xref="InterPro:IPR008282" /db_xref="InterPro:IPR018280" /db_xref="GeneID:10102440" /translation="MGQKIHPTGFRLSVSRNWASRWYASNRDFAGMLAEDIKVREFLK AKLKNAAVSRILIERPAKNARITIYSARPGVVIGKKGEDIENLKKELATRLGVPVAVN IEEVRKPEIDAKLIADSITQQLEKRIQFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGI EIARTEWYREGRVPLHTLRADIDYGTSEAKTTYGVIGVKVWVYKGDTLGRGDLPVAET PRPDDERRPRGPRRDGRPGDRAGRGGRRPMGGNAAPADGSDKPQGAGGADTTAVKRVR KTDAPATAADGKGE" misc_feature 441512..442147 /locus_tag="Alide_0417" /note="30S ribosomal protein S3; Reviewed; Region: rpsC; PRK00310" /db_xref="CDD:178972" misc_feature 441515..441838 /locus_tag="Alide_0417" /note="K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The...; Region: 30S_S3_KH; cd02412" /db_xref="CDD:48410" misc_feature 441743..441754 /locus_tag="Alide_0417" /note="G-X-X-G motif; other site" /db_xref="CDD:48410" misc_feature 441866..442117 /locus_tag="Alide_0417" /note="Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189" /db_xref="CDD:189441" gene 442387..442803 /locus_tag="Alide_0418" /db_xref="GeneID:10102441" CDS 442387..442803 /locus_tag="Alide_0418" /inference="protein motif:TFAM:TIGR01164" /note="KEGG: dia:Dtpsy_0280 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16" /codon_start=1 /transl_table=11 /product="ribosomal protein l16" /protein_id="YP_004125082.1" /db_xref="GI:319761145" /db_xref="GO:0003735" /db_xref="GO:0019843" /db_xref="InterPro:IPR000114" /db_xref="InterPro:IPR016180" /db_xref="InterPro:IPR020798" /db_xref="GeneID:10102441" /translation="MLQPARRKFRKEQKGRNTGIATRGNSVAFGDFGLKCTDRGRLTA RQIEAARRAISRHVKRGGRIWIRVFPDKPISTKPAEVRMGNGKGNPEYYVAEIQPGKV VFEIVGVPEELAREAFRLAAAKLPLRTTFVARQIGA" misc_feature 442453..442782 /locus_tag="Alide_0418" /note="Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433" /db_xref="CDD:88606" misc_feature order(442453..442455,442459..442464,442471..442473, 442519..442524,442531..442533,442540..442542, 442552..442554,442561..442563,442579..442587, 442591..442593,442597..442599,442609..442614, 442633..442647,442687..442689,442741..442746, 442753..442758) /locus_tag="Alide_0418" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88606" misc_feature 442498..442503 /locus_tag="Alide_0418" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88606" misc_feature order(442534..442542,442549..442554) /locus_tag="Alide_0418" /note="putative antibiotic binding site [chemical binding]; other site" /db_xref="CDD:88606" misc_feature order(442561..442563,442570..442575,442579..442581, 442705..442707) /locus_tag="Alide_0418" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:88606" misc_feature order(442627..442632,442639..442644) /locus_tag="Alide_0418" /note="L27 interface [polypeptide binding]; other site" /db_xref="CDD:88606" gene 442815..443012 /locus_tag="Alide_0419" /db_xref="GeneID:10102442" CDS 442815..443012 /locus_tag="Alide_0419" /inference="protein motif:TFAM:TIGR00012" /note="KEGG: dia:Dtpsy_0281 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29" /codon_start=1 /transl_table=11 /product="ribosomal protein l29" /protein_id="YP_004125083.1" /db_xref="GI:319761146" /db_xref="GO:0003735" /db_xref="InterPro:IPR001854" /db_xref="InterPro:IPR018254" /db_xref="GeneID:10102442" /translation="MTKAAELRQKDVAGLEAEIKSLQKAHFGLRMQKATQQLGNTATL KATRRDIARAKTILAEKQAAK" misc_feature 442827..442997 /locus_tag="Alide_0419" /note="Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where...; Region: Ribosomal_L29_HIP; cd00427" /db_xref="CDD:88602" misc_feature order(442827..442829,442836..442838,442938..442940, 442968..442973,442977..442982,442992..442994) /locus_tag="Alide_0419" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88602" misc_feature order(442827..442835,442839..442841,442851..442856, 442860..442865,442872..442877,442884..442889, 442896..442898,442905..442910,442932..442934, 442941..442943,442953..442955,442962..442967, 442974..442979,442986..442988) /locus_tag="Alide_0419" /note="putative translocon interaction site; other site" /db_xref="CDD:88602" misc_feature order(442875..442877,442887..442889,442896..442898, 442908..442910,442953..442955) /locus_tag="Alide_0419" /note="signal recognition particle (SRP54) interaction site; other site" /db_xref="CDD:88602" misc_feature order(442893..442895,442902..442907) /locus_tag="Alide_0419" /note="L23 interface [polypeptide binding]; other site" /db_xref="CDD:88602" misc_feature 442914..442919 /locus_tag="Alide_0419" /note="trigger factor interaction site; other site" /db_xref="CDD:88602" gene 443026..443295 /locus_tag="Alide_0420" /db_xref="GeneID:10102443" CDS 443026..443295 /locus_tag="Alide_0420" /inference="protein motif:TFAM:TIGR03635" /note="KEGG: dia:Dtpsy_0282 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17" /codon_start=1 /transl_table=11 /product="30S ribosomal protein s17" /protein_id="YP_004125084.1" /db_xref="GI:319761147" /db_xref="GO:0003735" /db_xref="InterPro:IPR000266" /db_xref="InterPro:IPR019979" /db_xref="InterPro:IPR019984" /db_xref="GeneID:10102443" /translation="MTEAKPSLKRTLVGKVVSDKRAKTVTVLVERRVKHPIYDKIMIK SSKYHAHDENGEYKMGDTVEITESRPLSKTKNWVATRLVQKAALV" misc_feature 443044..443283 /locus_tag="Alide_0420" /note="Ribosomal protein S17; Region: Ribosomal_S17; cl00351" /db_xref="CDD:189087" gene 443375..443881 /locus_tag="Alide_0421" /db_xref="GeneID:10102444" CDS 443375..443881 /locus_tag="Alide_0421" /inference="protein motif:PFAM:PF08534" /note="PFAM: Redoxin domain protein; KEGG: ajs:Ajs_0288 redoxin domain-containing protein" /codon_start=1 /transl_table=11 /product="redoxin domain protein" /protein_id="YP_004125085.1" /db_xref="GI:319761148" /db_xref="GO:0016491" /db_xref="InterPro:IPR013740" /db_xref="InterPro:IPR017936" /db_xref="GeneID:10102444" /translation="MIKVGDQLPTATLMEYVEVEGNGCSIGPNPVDVQKAAAGKTIAL FAVPGAFTPTCSAKHVPGYVEQAEALKAAGVDEIWCLAVNDAFVMGAWARDQKTAGKV RMLADGDAAFAKAVGLTLDLNGKGLGLRSNRYSMLVKDGKVATLNVEAPGKFEVSDAA TLLAQAKS" misc_feature 443384..443866 /locus_tag="Alide_0421" /note="Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5...; Region: PRX5_like; cd03013" /db_xref="CDD:48562" misc_feature order(443528..443530,443537..443539,443771..443773) /locus_tag="Alide_0421" /note="catalytic triad [active]" /db_xref="CDD:48562" misc_feature order(443531..443533,443627..443629,443633..443635, 443696..443701,443762..443764) /locus_tag="Alide_0421" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48562" gene complement(443987..444481) /locus_tag="Alide_0422" /db_xref="GeneID:10102445" CDS complement(443987..444481) /locus_tag="Alide_0422" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_0284 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="gcn5-related n-acetyltransferase" /protein_id="YP_004125086.1" /db_xref="GI:319761149" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10102445" /translation="MDHRPVVTLLSPTLPHEMEAVRKIFQEYADSLDVDLSFQAFADE LATLPGDYAPPRGHLLLAEVEGSIAGCCALRPLDTADYPNACEMKRLYVRKAFRGFGL GRQLAEAVLDLARQAGYACVLLDTLDGMESARALYAELGFVEIPPYYHNPIAGSHYLK ADIF" misc_feature complement(444107..444307) /locus_tag="Alide_0422" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(444170..444175,444203..444211)) /locus_tag="Alide_0422" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(444550..445278) /locus_tag="Alide_0423" /db_xref="GeneID:10102446" CDS complement(444550..445278) /locus_tag="Alide_0423" /inference="similar to AA sequence:KEGG:Dtpsy_0285" /note="KEGG: dia:Dtpsy_0285 cytochrome b561" /codon_start=1 /transl_table=11 /product="cytochrome b561" /protein_id="YP_004125087.1" /db_xref="GI:319761150" /db_xref="GeneID:10102446" /translation="MACGADAAAGHNGRIFLGLGSAHHAAHGTRLGLPTRLFHWAIVA TTIALVVTAKVGGNAMPWHMRLGLGLLMLALLAFRLAWGLVGGHWSRFANFLYSPGHL SGYLAGRGDETRDDVGHSPLGALSVFTLLAQVCSRLRSDDQIASAGPLAHLAPGEWVD LASWYHKDVGQYLLVAFVVLHLCAIAFYTLVRRRPLVRAMVRGDKQLPRPAPSARDDL ASRIGAAAILAAACVLAWWVAGLG" misc_feature complement(444664..445182) /locus_tag="Alide_0423" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene complement(445527..446030) /locus_tag="Alide_0424" /db_xref="GeneID:10102447" CDS complement(445527..446030) /locus_tag="Alide_0424" /inference="protein motif:PFAM:PF08534" /note="PFAM: Redoxin domain protein; KEGG: dia:Dtpsy_0287 redoxin domain protein" /codon_start=1 /transl_table=11 /product="redoxin domain protein" /protein_id="YP_004125088.1" /db_xref="GI:319761151" /db_xref="GO:0016491" /db_xref="InterPro:IPR013740" /db_xref="InterPro:IPR017936" /db_xref="GeneID:10102447" /translation="MGFKKWLVAGAVAAGVAVGAVVVLGSGQSVAPQSTFVLLDGSQQ TTADLKGKVTLVNFWATSCTTCVAEMPEIVATYDKYKDKGFETLAVAMSYDPPSYVVN FTETRKLPFKVAIDNTGAVAKAWGDVKLTPSTFIVNKRGEIVKSYVGAPDFGELHKLI ERLLAEA" sig_peptide complement(445953..446030) /locus_tag="Alide_0424" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.763 at residue 26" misc_feature complement(445584..445928) /locus_tag="Alide_0424" /note="TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing...; Region: TlpA_like_family; cd02966" /db_xref="CDD:48515" misc_feature complement(order(445833..445835,445842..445844)) /locus_tag="Alide_0424" /note="catalytic residues [active]" /db_xref="CDD:48515" gene 446103..446753 /locus_tag="Alide_0425" /db_xref="GeneID:10102448" CDS 446103..446753 /locus_tag="Alide_0425" /inference="similar to AA sequence:KEGG:Dtpsy_0288" /note="KEGG: dia:Dtpsy_0288 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125089.1" /db_xref="GI:319761152" /db_xref="GeneID:10102448" /translation="MPAWDWAGREKFAGPGACLGIMPAMSRPTACLPVAASALALLAC SPALDWRSVPLPEAGITLSLPCKPERAARPVDLGAGVVELSMVGCRADGATFALSHMP LADPSQAGAALARWRTAVLARMQAGPKAQAGTAFVPRQALDLPQSLRMVVRGRGADGA EVVAEAVWFARLEGRQARLYHAVVYAPQPRTAAADTFFTGLALAAVSAQRRHRAAP" gene 446775..447185 /locus_tag="Alide_0426" /db_xref="GeneID:10102449" CDS 446775..447185 /locus_tag="Alide_0426" /inference="protein motif:PFAM:PF03610" /note="PFAM: PTS system fructose subfamily IIA component; KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component" /codon_start=1 /transl_table=11 /product="pts system fructose subfamily iia component" /protein_id="YP_004125090.1" /db_xref="GI:319761153" /db_xref="InterPro:IPR001917" /db_xref="InterPro:IPR004701" /db_xref="GeneID:10102449" /translation="MNTRLLIIAHAPLAHALRECALHVFSDCADDLLALDVPPDEPPE QTLSKARALLAQHGQAPVLVLSDLFGATPCNVARRLVDDVHARLIAGVNLPMLLRAVC YRAEPLDALAARALAGGTQGMLQVAAESNPTRTS" misc_feature <446913..447086 /locus_tag="Alide_0426" /note="PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_man; cl00025" /db_xref="CDD:193618" misc_feature order(446973..446975,446988..446990) /locus_tag="Alide_0426" /note="active site" /db_xref="CDD:28890" gene 447182..447451 /locus_tag="Alide_0427" /db_xref="GeneID:10102450" CDS 447182..447451 /locus_tag="Alide_0427" /inference="protein motif:TFAM:TIGR01003" /note="KEGG: dia:Dtpsy_0291 phosphocarrier, HPr family; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr" /codon_start=1 /transl_table=11 /product="phosphocarrier, hpr family" /protein_id="YP_004125091.1" /db_xref="GI:319761154" /db_xref="GO:0005351" /db_xref="InterPro:IPR000032" /db_xref="InterPro:IPR001020" /db_xref="InterPro:IPR002114" /db_xref="InterPro:IPR005698" /db_xref="GeneID:10102450" /translation="MIKSTITISNKLGLHARASAKLTKLAGSYPCDVWMSKGERRINA KSIMGVMMLAAGLGSQVEIETDGTQEQDAMDALLALIDGKFGEGE" misc_feature 447194..447424 /locus_tag="Alide_0427" /note="Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367" /db_xref="CDD:29444" misc_feature 447194..447205 /locus_tag="Alide_0427" /note="dimerization domain swap beta strand [polypeptide binding]; other site" /db_xref="CDD:29444" misc_feature order(447221..447223,447227..447232,447236..447241, 447251..447253,447260..447262,447314..447325, 447332..447337) /locus_tag="Alide_0427" /note="regulatory protein interface [polypeptide binding]; other site" /db_xref="CDD:29444" misc_feature 447224..447226 /locus_tag="Alide_0427" /note="active site" /db_xref="CDD:29444" misc_feature 447317..447319 /locus_tag="Alide_0427" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:29444" gene 447470..449236 /locus_tag="Alide_0428" /db_xref="GeneID:10102451" CDS 447470..449236 /locus_tag="Alide_0428" /inference="protein motif:TFAM:TIGR01417" /note="KEGG: ajs:Ajs_0297 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate-protein phosphotransferase" /protein_id="YP_004125092.1" /db_xref="GI:319761155" /db_xref="GO:0005351" /db_xref="InterPro:IPR000121" /db_xref="InterPro:IPR006318" /db_xref="InterPro:IPR008279" /db_xref="InterPro:IPR008731" /db_xref="InterPro:IPR018274" /db_xref="GeneID:10102451" /translation="MTFSIHGLAIARGIAIGRAVLAASGSMEVAHYFIEPEQVQAEIA RVRGGRNAVIEELQRLQADMPPDAPPELAALLDVHLMLLQDEMLVSGVKHWITDRLYN AEWALTTQLEIISRQFDEMEDEYLRERKADLAQVVERILRRMKGVAGPMAPPPSRARR QAEAGAEAEYLQGDAADVPLVLVAHDLSPADMLQFKQSVFAGFVTDVGGKTSHTAIVA RSMDIPAVVGARLASQLVRQDDWIIIDGDAGTVIVDPTPIILAEYGFRQRQLALERER LTRLRHTPAVTLDAQAIELLANIEQPGDAAAALRAGAVGVGLFRSEFLFMGRGGRLPD EDEQYLAYREAVQGMEGLPVTIRTVDVGADKPLDKGYKDRSLNPALGLRAIRWSLSDP AMFRTQLRAMLRAAAHGPVRLLFPMLAHVSEIRQTLAQVDLARAELDARGAVYGPVQL GAMIEVPAAALIVQQFLRYFDFLSLGTNDLIQYTLAIDRADEAVAHLYEPLHPAVLRL VADVIAEGARQGKSVSVCGEMAGDVGMTRLLLGLGLRSFSMQPAQILAVKQEVLRVDA RKLADWALQVLASDDPAAMLAQ" misc_feature 447539..449221 /locus_tag="Alide_0428" /note="Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]; Region: PtsA; COG1080" /db_xref="CDD:31278" misc_feature <447569..447856 /locus_tag="Alide_0428" /note="PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524" /db_xref="CDD:191298" misc_feature 448004..448213 /locus_tag="Alide_0428" /note="PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; cl01586" /db_xref="CDD:194171" misc_feature 448313..449164 /locus_tag="Alide_0428" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(449303..450283) /locus_tag="Alide_0429" /db_xref="GeneID:10102452" CDS complement(449303..450283) /locus_tag="Alide_0429" /EC_number="2.8.1.8" /inference="protein motif:TFAM:TIGR00510" /note="SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: dia:Dtpsy_0293 lipoyl synthase; PFAM: Radical SAM domain protein" /codon_start=1 /transl_table=11 /product="lipoic acid synthetase" /protein_id="YP_004125093.1" /db_xref="GI:319761156" /db_xref="GO:0016992" /db_xref="InterPro:IPR003698" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:10102452" /translation="MSTPEIVREAQSAEAYNPLAKQKAAAKLSRIPIKVERGEVLKKP EWIRVKAGSPTTRFYEIKQILREHKLHTVCEEASCPNIGECFGHGTATFMIMGDKCTR RCPFCDVGHGRPDPLDKEEPLNLAKTIAALRLKYVVITSVDRDDLRDGGSGHFVECIQ RIRELSPATQIEILTPDFRGRDDRALEILKAAPPDVMNHNLETVPRLYKEARPGSDYQ FSLNLLKKFKALHPGVPTKSGLMVGLGETDEEILQVMRDMRAHGIDMLTIGQYLAPSN SHLPVRRYVHPDTFKMFEAEAYKMGFSHAAVGAMVRSSYHADQQAHAAGV" misc_feature complement(449306..450169) /locus_tag="Alide_0429" /note="lipoyl synthase; Provisional; Region: PRK05481" /db_xref="CDD:180115" misc_feature complement(449402..449986) /locus_tag="Alide_0429" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(449471..449476,449561..449563, 449684..449686,449756..449764,449828..449833, 449861..449863,449960..449968,449972..449974, 449978..449980,449984..449986)) /locus_tag="Alide_0429" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene complement(450301..450993) /locus_tag="Alide_0430" /db_xref="GeneID:10102453" CDS complement(450301..450993) /locus_tag="Alide_0430" /EC_number="2.3.1.181" /inference="protein motif:TFAM:TIGR00214" /note="TIGRFAM: lipoate-protein ligase B; KEGG: ajs:Ajs_0299 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase" /codon_start=1 /transl_table=11 /product="lipoate-protein ligase b" /protein_id="YP_004125094.1" /db_xref="GI:319761157" /db_xref="GO:0016415" /db_xref="InterPro:IPR000544" /db_xref="InterPro:IPR004143" /db_xref="InterPro:IPR020605" /db_xref="GeneID:10102453" /translation="MQLRVLGRAGYADTVAAMQRFTEERTGDTADELWICEHPPVYTQ GIAGKRDHILVPGDIPVVATNRGGQVTHHGPGQVVAYPLMDLHRAGYYVKEYVHRIEE AVIRTLGHYGVTGHRVAGAPGIYVRPDDPGSHVRLPQRPLRREPGSAAPVPDFTGLAK IAALGIKVARHCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLSTIGVHTTWDDVAA VLGKQLASRLAP" misc_feature complement(450304..450993) /locus_tag="Alide_0430" /note="Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057" /db_xref="CDD:187213" gene complement(451005..451301) /locus_tag="Alide_0431" /db_xref="GeneID:10102454" CDS complement(451005..451301) /locus_tag="Alide_0431" /inference="protein motif:PFAM:PF04359" /note="PFAM: protein of unknown function DUF493; KEGG: dia:Dtpsy_0295 protein of unknown function DUF493" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125095.1" /db_xref="GI:319761158" /db_xref="InterPro:IPR007454" /db_xref="GeneID:10102454" /translation="MTTPANPPATDPRKDSLIEYPSRFPIKVMGANVNGFVHAVTEVA RRFDPDFDASTIELRDSRAGNYLGVTITITATSREQLDDLYRALSSHPMVKVVL" misc_feature complement(451008..451280) /locus_tag="Alide_0431" /note="Protein of unknown function (DUF493); Region: DUF493; cl01102" /db_xref="CDD:194035" gene 451585..451977 /locus_tag="Alide_0432" /db_xref="GeneID:10102455" CDS 451585..451977 /locus_tag="Alide_0432" /inference="protein motif:PFAM:PF03899" /note="PFAM: ATP synthase I chain; KEGG: aav:Aave_0365 ATP synthase protein I" /codon_start=1 /transl_table=11 /product="ATP synthase i chain" /protein_id="YP_004125096.1" /db_xref="GI:319761159" /db_xref="GO:0015078" /db_xref="InterPro:IPR005598" /db_xref="GeneID:10102455" /translation="MEWRKRQPRLSVWRIVAVQAVVGVLAALLALLLTGRAQWAWSVG YGALSVVVPAALFARAMARRRTSAGAAVAGLFGWELVKIVVTVAMLAAAPRLVPGLSW LALLAGMVVTMKAYWVALLARPGVRRTD" sig_peptide 451585..451707 /locus_tag="Alide_0432" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.934) with cleavage site probability 0.568 at residue 41" gene 452000..452863 /locus_tag="Alide_0433" /db_xref="GeneID:10102456" CDS 452000..452863 /locus_tag="Alide_0433" /inference="protein motif:TFAM:TIGR01131" /note="KEGG: dia:Dtpsy_0297 F0F1 ATP synthase subunit A; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit" /codon_start=1 /transl_table=11 /product="ATP synthase f0, a subunit" /protein_id="YP_004125097.1" /db_xref="GI:319761160" /db_xref="GO:0015078" /db_xref="InterPro:IPR000568" /db_xref="GeneID:10102456" /translation="MAAEANAPTASEYIVHHLQHLQNVKQGFIVDFSVVNLDSIAISV LLGALMLLIFWSAARKASAGVPGRFQAAVEILVEMVDNQAKANIHNAQSRKFIAPLAL TVFVWIFLMNAMDMLPVDLLPWLWQHGTGDHHAYLRVVPTADLSTTLGLSSAVLLLCF YYSIKIKGLGGWIHELFTAPFGTSKNPLFAAILGVVNFAMQVIEYLAKTVSHGMRLFG NMYAGELVFMLIALMGGAAAMSLSGVLLPVGHIIAGSIWAIFHILIITLQAFIFMMLA LIYLGQAHDAH" misc_feature 452069..452860 /locus_tag="Alide_0433" /note="ATP synthase A chain; Region: ATP-synt_A; cl00413" /db_xref="CDD:185980" gene 452915..453163 /locus_tag="Alide_0434" /db_xref="GeneID:10102457" CDS 452915..453163 /locus_tag="Alide_0434" /inference="protein motif:TFAM:TIGR01260" /note="KEGG: dac:Daci_0415 F0F1 ATP synthase subunit C; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit" /codon_start=1 /transl_table=11 /product="ATP synthase f0, c subunit" /protein_id="YP_004125098.1" /db_xref="GI:319761161" /db_xref="GO:0015078" /db_xref="InterPro:IPR000454" /db_xref="InterPro:IPR002379" /db_xref="InterPro:IPR005953" /db_xref="InterPro:IPR020537" /db_xref="GeneID:10102457" /translation="MENILGLVALACGLIVGLGAIGASIGIALMGGKFLESSARQPEL INELQTKMFILAGLIDAAFLIGVAIALLFAFANPFVLA" sig_peptide 452915..452983 /locus_tag="Alide_0434" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.952) with cleavage site probability 0.808 at residue 23" misc_feature <453011..453148 /locus_tag="Alide_0434" /note="ATP synthase subunit C; Region: ATP-synt_C; cl00466" /db_xref="CDD:193830" gene 453202..453672 /locus_tag="Alide_0435" /db_xref="GeneID:10102458" CDS 453202..453672 /locus_tag="Alide_0435" /inference="protein motif:TFAM:TIGR01144" /note="KEGG: dia:Dtpsy_0299 F0F1 ATP synthase subunit B; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit" /codon_start=1 /transl_table=11 /product="ATP synthase f0, b subunit" /protein_id="YP_004125099.1" /db_xref="GI:319761162" /db_xref="GO:0015078" /db_xref="InterPro:IPR002146" /db_xref="InterPro:IPR005864" /db_xref="GeneID:10102458" /translation="MSINATLFVQAIVFLILVWFTMTFVWPPIAKALDERAQKIADGL AAADRARTELAAADQRVKQELAAASNETANRLADAERRAQAIIEEAKARATEEGNKIV AAARAEAEQQAIAAREALREQVAALAVKGAEQILRKEVNAGVHADLLNRLKTEL" misc_feature 453202..453669 /locus_tag="Alide_0435" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" misc_feature 453211..453669 /locus_tag="Alide_0435" /note="F0F1-type ATP synthase, subunit b [Energy production and conversion]; Region: AtpF; COG0711" /db_xref="CDD:31055" gene 453691..454233 /locus_tag="Alide_0436" /db_xref="GeneID:10102459" CDS 453691..454233 /locus_tag="Alide_0436" /inference="protein motif:TFAM:TIGR01145" /note="KEGG: dia:Dtpsy_0300 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit" /codon_start=1 /transl_table=11 /product="ATP synthase f1, delta subunit" /protein_id="YP_004125100.1" /db_xref="GI:319761163" /db_xref="GO:0015078" /db_xref="InterPro:IPR000711" /db_xref="GeneID:10102459" /translation="MAELATIARPYAEALYKACTGKAGTDLNGACAWVDELAAIAANP QLRQLLDNPKVTAEQLFDVITGVAKTALPEMAHNFLRTLLDNGRVQVLPEIATQFRAL VNQGNGSSDAVVYSAFPLDANALAELSATLQKRFARTLNLSVQTDESLIGGVRVVVGD EVLDTSVKARLEQMKAALTA" misc_feature 453691..454230 /locus_tag="Alide_0436" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" misc_feature 453709..454224 /locus_tag="Alide_0436" /note="ATP synthase delta (OSCP) subunit; Region: OSCP; pfam00213" /db_xref="CDD:189453" gene 454279..455838 /locus_tag="Alide_0437" /db_xref="GeneID:10102460" CDS 454279..455838 /locus_tag="Alide_0437" /inference="protein motif:TFAM:TIGR00962" /note="KEGG: aav:Aave_0370 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein" /codon_start=1 /transl_table=11 /product="ATP synthase f1, alpha subunit" /protein_id="YP_004125101.1" /db_xref="GI:319761164" /db_xref="GO:0015078" /db_xref="InterPro:IPR000194" /db_xref="InterPro:IPR000793" /db_xref="InterPro:IPR004100" /db_xref="InterPro:IPR005294" /db_xref="InterPro:IPR020003" /db_xref="GeneID:10102460" /translation="MQLNPAEISELIKSRIEGLAASSDIRNQGTVVSVTDGIVRIHGL SDVMQGEMLEFPADADGQPSYGLALNLERDSVGAVILGAYEHISEGDTVKCTGRILEV PVGPELIGRVVNALGQPIDGKGPINAKMTDVIEKVAPGVIARQSVDQPLATGQKSIDS MVPVGRGQRELIIGDRQTGKTAVAIDAIIAQKGQGVTCIYVAIGQKASSIKNVVRSLE QAGAMDYTIVVAASASESAAMQYVSAYSGCTMGEYFRDRGQDALIVYDDLSKQAVAYR QVSLLLRRPPGREAFPGDVFYLHSRLLERAARVNADYVEAFTKGEVKGKTGSLTALPV IETQAGDVSAFVPTNVISITDGQIFLETSLFNAGIRPAINAGISVSRVGGAAQTKLIK GLSGGIRTDLAQYRELAAFAQFASDLDEATRKQLDRGARVTELLKQPQYSPLPISLMA ASLFAVNKGFMDDVDVKKILPFESGLHQFLKTSHAALLERLEQNRAFDKEGKDEAELT QAITAFKKSFV" misc_feature 454279..455835 /locus_tag="Alide_0437" /note="F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281" /db_xref="CDD:181753" misc_feature 454351..454569 /locus_tag="Alide_0437" /note="ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874" /db_xref="CDD:145823" misc_feature 454573..455427 /locus_tag="Alide_0437" /note="F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132" /db_xref="CDD:29998" misc_feature order(454636..454641,454687..454692,454696..454701, 454708..454710,454714..454716,454804..454809, 454894..454905,454909..454914,454921..454923, 455104..455109,455125..455133,455137..455142, 455155..455157,455167..455169,455176..455178, 455188..455190,455332..455334,455341..455343, 455374..455379,455386..455388,455419..455421) /locus_tag="Alide_0437" /note="beta subunit interaction interface [polypeptide binding]; other site" /db_xref="CDD:29998" misc_feature 454798..454821 /locus_tag="Alide_0437" /note="Walker A motif; other site" /db_xref="CDD:29998" misc_feature order(454804..454806,454816..454824,454876..454878, 454891..454893,455074..455079,455086..455088, 455284..455286,455332..455334,455371..455373, 455386..455391,455419..455421) /locus_tag="Alide_0437" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29998" misc_feature 455062..455076 /locus_tag="Alide_0437" /note="Walker B motif; other site" /db_xref="CDD:29998" misc_feature 455452..>455658 /locus_tag="Alide_0437" /note="ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306" /db_xref="CDD:144044" gene 455857..456723 /locus_tag="Alide_0438" /db_xref="GeneID:10102461" CDS 455857..456723 /locus_tag="Alide_0438" /inference="protein motif:TFAM:TIGR01146" /note="KEGG: dia:Dtpsy_0302 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit" /codon_start=1 /transl_table=11 /product="ATP synthase f1, gamma subunit" /protein_id="YP_004125102.1" /db_xref="GI:319761165" /db_xref="GO:0015078" /db_xref="InterPro:IPR000131" /db_xref="GeneID:10102461" /translation="MAAGKEIRGKIKSVENTKKITKAMEMVAASKMRKAQDRMRAARP FAEKVRNIAAHLGEANPEYVHPFMKVNDAKAAGVIVVTTDKGLCGGMNTNVLRAVTSK LRELQSQGVEAQAVAIGNKGLGFLNRIGAKVVAQSVGLGDTPHLEKLIGPVKVLLDAY AEGKINAVYLSYTKFINTMKQESVVERLLPLSSEQMKADKSGPSWDYIYEPDAQTVID ELLVRYVESLIYQAVAENMASEQSARMVAMKAATDNAGNVINELKLVYNKTRQAAITK ELSEIVAGAAAV" misc_feature 455857..456720 /locus_tag="Alide_0438" /note="ATP synthase; Region: ATP-synt; cl00365" /db_xref="CDD:193790" gene 456752..458161 /locus_tag="Alide_0439" /db_xref="GeneID:10102462" CDS 456752..458161 /locus_tag="Alide_0439" /inference="protein motif:TFAM:TIGR01039" /note="TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: dia:Dtpsy_0303 F0F1 ATP synthase subunit beta; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="ATP synthase f1, beta subunit" /protein_id="YP_004125103.1" /db_xref="GI:319761166" /db_xref="GO:0015078" /db_xref="InterPro:IPR000194" /db_xref="InterPro:IPR000793" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004100" /db_xref="InterPro:IPR005722" /db_xref="InterPro:IPR020003" /db_xref="GeneID:10102462" /translation="MAQVQGKIVQCIGAVVDVEFPRDQMPKVYDALKLEGSALTLEVQ QQLGDGIVRTIALGSSDGLKRGLMVTNTGNPITVPVGKATLGRIMDVLGNPIDERGPV SQELTASIHRKAPAYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNM MELINNIAKAHSGLSVFAGVGERTREGNDFYHEMSDSKVVVQEDLSQSKVAMVYGQMN EPPGNRLRVALTGLTIAESFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQ PTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA ALGIYPAVDPLDSTSRQLDPHVVGEEHYGVARAVQGTLQRYKELRDIIAILGMDELAP EDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVPLAETIRGFKMIVNGECDHLPEQA FYMVGTIDEAFEKAKKLAN" misc_feature 456758..458155 /locus_tag="Alide_0439" /note="F0F1 ATP synthase subunit beta; Validated; Region: PRK09280" /db_xref="CDD:181752" misc_feature 456773..456970 /locus_tag="Alide_0439" /note="ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874" /db_xref="CDD:145823" misc_feature 456974..457813 /locus_tag="Alide_0439" /note="F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133" /db_xref="CDD:29999" misc_feature order(457043..457045,457094..457096,457100..457105, 457109..457111,457115..457117,457298..457306, 457313..457315,457400..457408,457421..457423, 457511..457513,457520..457522,457532..457534, 457550..457558,457562..457567,457580..457582, 457592..457594,457613..457615,457664..457666, 457673..457678,457688..457690,457709..457711, 457715..457723,457754..457759,457784..457789, 457793..457795,457799..457801) /locus_tag="Alide_0439" /note="alpha subunit interaction interface [polypeptide binding]; other site" /db_xref="CDD:29999" misc_feature 457202..457222 /locus_tag="Alide_0439" /note="Walker A motif; other site" /db_xref="CDD:29999" misc_feature order(457208..457210,457217..457225,457295..457300, 457307..457309,457499..457501,457511..457513, 457763..457768) /locus_tag="Alide_0439" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29999" misc_feature 457487..457501 /locus_tag="Alide_0439" /note="Walker B motif; other site" /db_xref="CDD:29999" misc_feature order(457757..457759,457763..457765,457781..457786) /locus_tag="Alide_0439" /note="inhibitor binding site; inhibition site" /db_xref="CDD:29999" misc_feature 457835..458152 /locus_tag="Alide_0439" /note="ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306" /db_xref="CDD:144044" gene 458236..458652 /locus_tag="Alide_0440" /db_xref="GeneID:10102463" CDS 458236..458652 /locus_tag="Alide_0440" /inference="protein motif:TFAM:TIGR01216" /note="KEGG: dia:Dtpsy_0304 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like" /codon_start=1 /transl_table=11 /product="ATP synthase f1, epsilon subunit" /protein_id="YP_004125104.1" /db_xref="GI:319761167" /db_xref="GO:0015078" /db_xref="InterPro:IPR001469" /db_xref="InterPro:IPR020546" /db_xref="GeneID:10102463" /translation="MNTIHVDVVSAEESIFAGEARFVALPGEAGELGILPKHTPLITR IKPGSVRIEMADGSEEFVFVAGGILEVQPDCVTVLSDTAIRGKDLDDQKAQEARAAAE EALKNAKSEIDIARAQSELAIMAAQIAALRKYRQKH" misc_feature 458236..458640 /locus_tag="Alide_0440" /note="F0F1 ATP synthase subunit epsilon; Validated; Region: atpC; PRK00571" /db_xref="CDD:179070" misc_feature 458245..458484 /locus_tag="Alide_0440" /note="ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Region: ATP-synt_DE_N; cl10033" /db_xref="CDD:195951" gene complement(458735..459369) /locus_tag="Alide_0441" /pseudo /db_xref="GeneID:10102464" gene complement(459369..460290) /locus_tag="Alide_0442" /pseudo /db_xref="GeneID:10102465" gene complement(460304..460783) /locus_tag="Alide_0443" /pseudo /db_xref="GeneID:10102466" gene 460827..461639 /locus_tag="Alide_0444" /db_xref="GeneID:10102467" CDS 460827..461639 /locus_tag="Alide_0444" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_2574 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125105.1" /db_xref="GI:319761168" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102467" /translation="MGVSRAALSQHLKALEQRLDVRLLHRTTRDMSLTEEGQRLFDAL QGALASVERALAEPSGLIRINTSRVAAQALLEPHLAEFLARYPRLRVELVLADGFSNI VADGMDAGIRLGESLDEHMVAVPITPMVRMAVVGSPGYFERHGTPAEPADLMRHNCLA YRFTSSGAIDRWSFTSPDAEGRTIVLEPQGNAVFNDDESMLRAALQGVGLVKHLDLCM RQHLASGALVRVLQPWCAPFPGFFLYVPSRAQMPAKIRALMDFLVGKRAALQ" misc_feature 460827..461636 /locus_tag="Alide_0444" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature <460827..460940 /locus_tag="Alide_0444" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 460998..461612 /locus_tag="Alide_0444" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474" /db_xref="CDD:176163" misc_feature order(461034..461036,461046..461048,461163..461165, 461205..461207,461214..461216,461415..461417, 461466..461468,461547..461549) /locus_tag="Alide_0444" /note="putative effector binding pocket; other site" /db_xref="CDD:176163" misc_feature order(461037..461042,461052..461057,461061..461066, 461073..461075,461085..461087,461091..461111, 461295..461297,461397..461411,461430..461435, 461442..461444) /locus_tag="Alide_0444" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176163" gene complement(461645..462178) /locus_tag="Alide_0445" /db_xref="GeneID:10102468" CDS complement(461645..462178) /locus_tag="Alide_0445" /inference="protein motif:PFAM:PF04536" /note="PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125106.1" /db_xref="GI:319761169" /db_xref="InterPro:IPR007621" /db_xref="GeneID:10102468" /translation="MAKTRTGFLHRLARLLRHRWADGGLHQALPPKLLERLGRRVSAS ERRHTGQIRICVEGGLPLSYLWRGASVRERAVTQFGKLRVWDTEHNNGVLIYLLLAEH AIEIVADRGLAHAVPAGTWRDMADHMAQAFREGRYEDGLTLALAEVSALLVEHFPAAP GQPGARSNELPDTPVVG" misc_feature complement(461759..462100) /locus_tag="Alide_0445" /note="Domain of unknown function (DUF477); Region: DUF477; cl01535" /db_xref="CDD:194159" gene complement(462192..463079) /locus_tag="Alide_0446" /db_xref="GeneID:10102469" CDS complement(462192..463079) /locus_tag="Alide_0446" /inference="protein motif:PFAM:PF04536" /note="PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125107.1" /db_xref="GI:319761170" /db_xref="InterPro:IPR007621" /db_xref="GeneID:10102469" /translation="MPLALVLQALIAISLVAIGAPGATAQPLRAVPALTARVIDQTAT LSEGERQALEAQLAAIEQQHGSQVVVLMVPTTAPEDIAAFANRVGNAWKIGRRDVGDG VLVIVAKDDRRMRIEVAKALEGAIPDIAAARIIDGAMKPRFRENDFAGGLDAAVRQIG ARIAGESLPPPKGEGQRRPDGAGWEDLAIFLFFGVLVAGPVVRALFGQRLGALVMGGG VGVLAFLATASVLLAAGAGIAALFYTWAFAGRGAPIVWNGGGWGGGRGGGWSGGGGGG GFRSGGGGDFGGGGASGDW" sig_peptide complement(463002..463079) /locus_tag="Alide_0446" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.933 at residue 26" misc_feature complement(<462459..463076) /locus_tag="Alide_0446" /note="Domain of unknown function (DUF477); Region: DUF477; cl01535" /db_xref="CDD:194159" gene complement(463083..463688) /locus_tag="Alide_0447" /db_xref="GeneID:10102470" CDS complement(463083..463688) /locus_tag="Alide_0447" /inference="protein motif:PFAM:PF04011" /note="PFAM: LemA family protein; KEGG: aav:Aave_0381 LemA family protein" /codon_start=1 /transl_table=11 /product="lema family protein" /protein_id="YP_004125108.1" /db_xref="GI:319761171" /db_xref="InterPro:IPR007156" /db_xref="GeneID:10102470" /translation="MKRLIATIAAALALSGCGYNDFQRLDEQSKAAWSEVLNQYQRRA DLVPNIVATVKGEAAFEQETLTKVIEARAKATSIQVTPELLNNPEAFNKFQQAQGELS SALSRLMVVAERYPQLQANQAFRDLRVTLEGTENRITVARNRYIQTVQEYNVLARSFP TNITAMVFSYAPKPSFTVQNEAQISAPPTVDFSSPAAPASK" sig_peptide complement(463626..463688) /locus_tag="Alide_0447" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.748) with cleavage site probability 0.496 at residue 21" misc_feature complement(463113..463646) /locus_tag="Alide_0447" /note="LemA family; Region: LemA; cl00742" /db_xref="CDD:120079" gene 463809..464276 /locus_tag="Alide_0448" /db_xref="GeneID:10102471" CDS 463809..464276 /locus_tag="Alide_0448" /inference="similar to AA sequence:KEGG:Dtpsy_0312" /note="KEGG: dia:Dtpsy_0312 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125109.1" /db_xref="GI:319761172" /db_xref="GeneID:10102471" /translation="MHGAWLMTQSSMRAAVLAGTPDELEIIFYDALRAGDLDRVMACW ADEDDIVCIHPGGLRLIGLAAIRSAFAAMLRHGGLGVRTQRVGCVQTLASAVHSVLEH VSVMLPDGPREAVVCATNVYHKTPRGWCLVTHHASPGVVGEGAAPAAAAHVLH" misc_feature 463890..>464036 /locus_tag="Alide_0448" /note="Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109" /db_xref="CDD:195792" gene 464322..464858 /locus_tag="Alide_0449" /db_xref="GeneID:10102472" CDS 464322..464858 /locus_tag="Alide_0449" /inference="similar to AA sequence:KEGG:Ajs_0319" /note="KEGG: ajs:Ajs_0319 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125110.1" /db_xref="GI:319761173" /db_xref="GeneID:10102472" /translation="MDDIVRQAIAKWPHVPDCYAWLGLDARGQWYLRDEGTQARGGFR AARGVRLEHAKLIDFIHRNYEADARGCWFFQNGPQRVYVELEAAPLVWRVNAAGEAVA HTGAPAGGVQECLVDEEGRVYLTSPMGLGLVHSLDVDCVAQQIEQGRWQPREVRAADL PAACGFVPSPAALARTGA" misc_feature 464322..464840 /locus_tag="Alide_0449" /note="Protein of unknown function (DUF2946); Region: DUF2944; pfam11161" /db_xref="CDD:151603" gene complement(465014..465850) /locus_tag="Alide_0450" /db_xref="GeneID:10102473" CDS complement(465014..465850) /locus_tag="Alide_0450" /inference="protein motif:PFAM:PF00034" /note="PFAM: cytochrome c class I; KEGG: aav:Aave_0385 cytochrome c, class I" /codon_start=1 /transl_table=11 /product="cytochrome c class i" /protein_id="YP_004125111.1" /db_xref="GI:319761174" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR002323" /db_xref="InterPro:IPR003088" /db_xref="InterPro:IPR009056" /db_xref="GeneID:10102473" /translation="MSDTHDEAHSGMIKSPKQFLLSAIFAFVLPVFIIIGLVVFVTSG NKPNAGVDNAEMAIAQRLQKVGSVQVRDANRPLRSGEEVFKGQCAACHATGAAGAPKL ADAAAWGPRIKTGFEALVQSALKGKGAMAPQGGGDFNDTEIARGVAYMANAAGAKFAE PAAPAAADAAPAAAPAAAEAPPAAAAAAPAAAAPAGGAGQAAGKAVYESTCVACHGTG VAGAPKFGDKAAWAPRLAAGFDEVLKIATQGKGAMPPKGGSTASAADFKAAVEYLVNS AK" misc_feature complement(465017..>465235) /locus_tag="Alide_0450" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene complement(465980..467425) /locus_tag="Alide_0451" /db_xref="GeneID:10102474" CDS complement(465980..467425) /locus_tag="Alide_0451" /inference="protein motif:TFAM:TIGR01845" /note="KEGG: dia:Dtpsy_0316 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="rnd efflux system, outer membrane lipoprotein, nodt family" /protein_id="YP_004125112.1" /db_xref="GI:319761175" /db_xref="GO:0005215" /db_xref="GO:0008289" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010131" /db_xref="GeneID:10102474" /translation="MHKHTLPRTRPARALSPLVIAALLAGCSFIPKYERPAAPVPEAF ALAGNDVPATARAAADIDWKDYFTDPRLQRLIGIALGNNRDLRVAMLNVEQARAQFQI QRAGQFPTVNAIASGTRQPSIVNGQYANQFQAGLGISAWEIDFFGRIGALKEQALAQF LATEEARKSAQISLVAAVASGWLTLMADEELLDISRRTLETREESVKLTRLRLEHGVS SELDSHQAESLAQAARATYAQQQRQRLLDENALALLLGQPLPDDIRASLPSMRLADAA PMQPLPAGLPSDLLQRRPDIRQAEQLLIGANANIGAARAAFFPRISLTAQFGSVSDEL SGLFKSGSWAFSLAPQLALPIFDAGRNQAGLESARAGREIAVAQYEKSIQTAFREVSD ALAGQATLQQQIDAQRAQTQADAKRLDLSDLRYRNGVASYLDLLDAQRSLYATEQALV QTRLQQLQNQVTLYKVLGGGWTDTGGGPARS" misc_feature complement(466025..467356) /locus_tag="Alide_0451" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature complement(466742..467212) /locus_tag="Alide_0451" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(466025..466558) /locus_tag="Alide_0451" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(467450..470605) /locus_tag="Alide_0452" /db_xref="GeneID:10102475" CDS complement(467450..470605) /locus_tag="Alide_0452" /inference="protein motif:TFAM:TIGR00915" /note="KEGG: dia:Dtpsy_0317 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="transporter, hydrophobe/amphiphile efflux-1 (hae1) family" /protein_id="YP_004125113.1" /db_xref="GI:319761176" /db_xref="GO:0005215" /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR004764" /db_xref="GeneID:10102475" /translation="MAKFFIERPIFAWVVAIFIMVAGAVSITQLPIAQYPAVAPPTIQ VSVAYPGATAQTLEDSVLAVIEREMNGATGLAYMEATAQANGTGSIVLSFEPGTNDDL AQVDVQNRLSRATPRLPAAVTQQGVRVEKSRSNFLLFSMLTSETPNVSIDALNDYAAR NIVPELQRLPGVGSVTQFGSERAMRVWIDPAKLKGFNLSLDQVNAAIRAQNVQVSAGN LGDLPSAQGQTTTATIVVQGQLSTTEQFGNIVLRANTDGSTVRLRDVATLELGAQSYS TSARLNGSPAVGMGVQLTPTANALATAKAVKARLAELQQYFPQGVKYTIPYDTSTFIS VSIEKVVHTLLEAVVLVFLVMFLFLQNFRYTIIPTIVVPVALLGTFGALLAMGFSINV LTMFGMVLVIGIVVDDAIVVVENVERIMSEEGLPPLQATRKAMDQISGAIVGVTVVLV SVFVPLAFFAGSTGNIYRQFAATMATSIAFSAFLALSLTPALCGTLLKPVDAGHHMEK KGFFGWFNRAFKSTTHRYESGLARLVRRGGRMAVIYAALIGAVAIVYTRLPTSFLPNE DQGYLITNVQLPAGASLERTRAALTQVENFALKQPEVNNIVTVAGFSFSGQGQNAGLA FVTLKDWSERPGPEHSAAAIAGRAMGALMGYRDAFIFALSPPPIPELGTATGFTFRLQ DRGSKGHAALVAARNQLLGMAAQSKVLAGVRPDGMEDAPQMQIDIDRDKASALGVSFD AIGSALSTALGSTYVNDFPNQGRLQRVVVQADARARMQPEEVLDIPVLNNKGQVVPLS TFATTRWLTGAMQTVRYNGYPSMKIAGDAAPGFSTGDAMAEMERLAAQLPEGFGFEWT GQSREEKLAGSQAMVLYAFSLLAVFLCLAALYESWSIPFSVLLVVPLGVLGVLLATLL RGMSNDVYFQIGLVTIIGLSAKNAILIIEFAKDLQASGKSVIQAALEAAHLRFRPIVM TSLAFTLGVLPLFLASGASSASQRAIGTGVIGGMITGTLLAVIFVPVFFVVVRSFFKG SQRQREHDAKHAMQHHSDSAA" misc_feature complement(467615..470605) /locus_tag="Alide_0452" /note="The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915" /db_xref="CDD:162104" gene complement(470624..471904) /locus_tag="Alide_0453" /db_xref="GeneID:10102476" CDS complement(470624..471904) /locus_tag="Alide_0453" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: dia:Dtpsy_0318 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein" /codon_start=1 /transl_table=11 /product="efflux transporter, rnd family, mfp subunit" /protein_id="YP_004125114.1" /db_xref="GI:319761177" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10102476" /translation="MPRLNNNKNARPVRRFVRRPAAALSIALAAALALAACGKKDAAP AGAGGPPPAPQVGVVTVQPGDIGLVTELPGRLEASRIAEVRARAAGILQKRLFAEGSD VKAGQKLFLIDSAPYEAALAQAQASVAQAEASLAQSRALAERYRPLVAVNAISKQEYD NAVAAQKTAEANVAAAKAAVTTARINLGYATVTAPISGRIGRALVTEGALVGQGTPTE MAVIQQIDPLYINFTQSASEALKLRAAMASGKYKKAGANAANVSVVLEDGSVHKQPGR LLFTDLTVDATSGQVTLRAEVPNPDRSLLPGLYVRVRLEQAQVDNGVLLPQQAVTRTG AADTVMVVGEGGRVSPRPVKLGPAQGTNWVVLDGLKAGEQVMVDGFQKLPRVKPGDPM VVQPVPWQANGAAKAPAQAASAAASQPAATPAKQ" sig_peptide complement(471797..471904) /locus_tag="Alide_0453" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.537 at residue 36" misc_feature complement(470771..471742) /locus_tag="Alide_0453" /note="periplasmic multidrug efflux lipoprotein precursor; Reviewed; Region: PRK09578" /db_xref="CDD:169982" gene 472096..472716 /locus_tag="Alide_0454" /db_xref="GeneID:10102477" CDS 472096..472716 /locus_tag="Alide_0454" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain-containing protein; KEGG: dia:Dtpsy_0319 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="regulatory protein tetr" /protein_id="YP_004125115.1" /db_xref="GI:319761178" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="InterPro:IPR013572" /db_xref="GeneID:10102477" /translation="MARRTKEDADATRNALLDAAELVFYEKGVARASLSEIAQAAGAT RGAIYWHFKDKVDLFNAMMDRATLPLEGVCNAGEAAYAKEPLVQLRGMVELLLRSVVS DAHMRRVFEIALYRVEYVSELSGVRERHLAAHARFQALLERNLSLAAAQASLALPMSA AMAAAGLHALFNGLLQSWLLGEASFDLPATGRAAVDAYLRGLGFHV" misc_feature 472096..472707 /locus_tag="Alide_0454" /note="DNA-binding transcriptional repressor AcrR; Provisional; Region: PRK10668" /db_xref="CDD:182632" misc_feature 472141..472281 /locus_tag="Alide_0454" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" misc_feature 472348..472701 /locus_tag="Alide_0454" /note="MAATS-type transcriptional repressor, C-terminal region; Region: TetR_C_2; pfam08361" /db_xref="CDD:116942" gene 472750..472825 /locus_tag="Alide_R0001" /note="tRNA-Arg1" /db_xref="GeneID:10102478" tRNA 472750..472825 /locus_tag="Alide_R0001" /product="tRNA-Arg" /note="GenePRIMP" /db_xref="GeneID:10102478" gene 472974..473059 /locus_tag="Alide_R0002" /note="tRNA-Tyr1" /db_xref="GeneID:10102479" tRNA 472974..473059 /locus_tag="Alide_R0002" /product="tRNA-Tyr" /db_xref="GeneID:10102479" gene 473108..473181 /locus_tag="Alide_R0003" /note="tRNA-Gly1" /db_xref="GeneID:10102480" tRNA 473108..473181 /locus_tag="Alide_R0003" /product="tRNA-Gly" /note="GenePRIMP; GenePRIMP" /db_xref="GeneID:10102480" gene 473222..473296 /locus_tag="Alide_R0004" /note="tRNA-Thr1" /db_xref="GeneID:10102481" tRNA 473222..473296 /locus_tag="Alide_R0004" /product="tRNA-Thr" /db_xref="GeneID:10102481" gene 473372..474562 /locus_tag="Alide_0455" /db_xref="GeneID:10102482" CDS 473372..474562 /locus_tag="Alide_0455" /inference="protein motif:TFAM:TIGR00485" /note="KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein" /codon_start=1 /transl_table=11 /product="translation elongation factor tu" /protein_id="YP_004125116.1" /db_xref="GI:319761179" /db_xref="GO:0003746" /db_xref="GO:0005525" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004160" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004541" /db_xref="InterPro:IPR005225" /db_xref="GeneID:10102482" /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAKKFGGEA KGYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGA ILVCSAADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLDK YEFPGDDTPIIRGSAKLALEGDQSDKGEPAILKLAEALDTYIPTPERAVDGTFLMPVE DVFSISGRGTVVTGRVERGIIKVGEEIEIVGIRETQKTTVTGVEMFRKLLDQGQAGDN VGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFY FRTTDVTGSIELPADKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVA KIIE" misc_feature 473372..474559 /locus_tag="Alide_0455" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:178823" misc_feature 473402..473986 /locus_tag="Alide_0455" /note="EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors; Region: EF_Tu; cd01884" /db_xref="CDD:133284" misc_feature 473426..473449 /locus_tag="Alide_0455" /note="G1 box; other site" /db_xref="CDD:133284" misc_feature order(473429..473431,473435..473437,473447..473452, 473459..473461,473468..473473,473483..473485, 473567..473572,473624..473629,473696..473701, 473705..473716,473723..473725,473816..473818, 473828..473830,473906..473911) /locus_tag="Alide_0455" /note="GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133284" misc_feature order(473435..473452,473510..473512,473777..473782, 473786..473788,473891..473899) /locus_tag="Alide_0455" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133284" misc_feature 473537..473569 /locus_tag="Alide_0455" /note="Switch I region; other site" /db_xref="CDD:133284" misc_feature 473555..473557 /locus_tag="Alide_0455" /note="G2 box; other site" /db_xref="CDD:133284" misc_feature 473612..473623 /locus_tag="Alide_0455" /note="G3 box; other site" /db_xref="CDD:133284" misc_feature 473618..473674 /locus_tag="Alide_0455" /note="Switch II region; other site" /db_xref="CDD:133284" misc_feature 473777..473788 /locus_tag="Alide_0455" /note="G4 box; other site" /db_xref="CDD:133284" misc_feature 473891..473899 /locus_tag="Alide_0455" /note="G5 box; other site" /db_xref="CDD:133284" misc_feature 474008..474268 /locus_tag="Alide_0455" /note="EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697" /db_xref="CDD:58088" misc_feature 474275..474544 /locus_tag="Alide_0455" /note="Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts)...; Region: EFTU_III; cd03707" /db_xref="CDD:58073" misc_feature order(474311..474313,474317..474325,474377..474379, 474497..474505,474533..474535) /locus_tag="Alide_0455" /note="Antibiotic Binding Site [chemical binding]; other site" /db_xref="CDD:58073" gene 474575..474650 /locus_tag="Alide_R0005" /note="tRNA-Trp1" /db_xref="GeneID:10102483" tRNA 474575..474650 /locus_tag="Alide_R0005" /product="tRNA-Trp" /db_xref="GeneID:10102483" gene 474739..475122 /locus_tag="Alide_0456" /db_xref="GeneID:10102484" CDS 474739..475122 /locus_tag="Alide_0456" /inference="protein motif:TFAM:TIGR00964" /note="KEGG: ajs:Ajs_3903 preprotein translocase subunit SecE; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein" /codon_start=1 /transl_table=11 /product="preprotein translocase, sece subunit" /protein_id="YP_004125117.1" /db_xref="GI:319761180" /db_xref="GO:0015450" /db_xref="InterPro:IPR001901" /db_xref="InterPro:IPR005807" /db_xref="GeneID:10102484" /translation="MATSQVETVTTGADKAKLFAAVAIVLASVAGFYVLGKQGPLIQW GALVLGLVLAVVMFLTSEHGRQFMGFSRDAWREVKKVVWPTRKETLQMTGYVFAFVVL MALFLWLTDKTLEWVLYDLVLGWRK" misc_feature 474832..475110 /locus_tag="Alide_0456" /note="SecE/Sec61-gamma subunits of protein translocation complex; Region: SecE; cl00481" /db_xref="CDD:193837" gene 475122..475712 /locus_tag="Alide_0457" /db_xref="GeneID:10102485" CDS 475122..475712 /locus_tag="Alide_0457" /inference="protein motif:TFAM:TIGR00922" /note="TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: dia:Dtpsy_3251 NusG antitermination factor; SMART: NGN domain-containing protein; KOW domain protein" /codon_start=1 /transl_table=11 /product="transcription termination/antitermination factor nusg" /protein_id="YP_004125118.1" /db_xref="GI:319761181" /db_xref="GO:0003711" /db_xref="InterPro:IPR001062" /db_xref="InterPro:IPR005824" /db_xref="InterPro:IPR006645" /db_xref="InterPro:IPR015869" /db_xref="GeneID:10102485" /translation="MVDAVETNGAQPPVDASVNPDLRWYIVHAYSGMEKAVERNIQER IVRSGMQHKFGRILVPTEEVVEMKNGQRKTTERRLFPGYVFVEMVMDDDTWHLVKHTS KVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIEFMVGELVRVKEGPFTDFN GSVEEVNYEKNRLRVSVMIFGRSTPVELEFGQVEKT" misc_feature 475176..475706 /locus_tag="Alide_0457" /note="transcription antitermination protein NusG; Validated; Region: nusG; PRK05609" /db_xref="CDD:180161" misc_feature 475188..475511 /locus_tag="Alide_0457" /note="Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891" /db_xref="CDD:193580" misc_feature order(475197..475199,475299..475301,475359..475361, 475368..475370,475374..475376,475473..475475, 475497..475499) /locus_tag="Alide_0457" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:193580" gene 475844..476275 /locus_tag="Alide_0458" /db_xref="GeneID:10102486" CDS 475844..476275 /locus_tag="Alide_0458" /inference="protein motif:TFAM:TIGR01632" /note="TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: aav:Aave_4535 50S ribosomal protein L11; SMART: ribosomal protein L11" /codon_start=1 /transl_table=11 /product="ribosomal protein l11" /protein_id="YP_004125119.1" /db_xref="GI:319761182" /db_xref="GO:0003735" /db_xref="InterPro:IPR000911" /db_xref="InterPro:IPR006519" /db_xref="InterPro:IPR020783" /db_xref="InterPro:IPR020784" /db_xref="InterPro:IPR020785" /db_xref="GeneID:10102486" /translation="MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNA QTQGVEPGLPLPVVITAFADKSFTFIIKTPPATTLIKKAIKLEKGSSNALSTKVGKIT RAQLEEIAKTKLKDMNAASVDAAVRTLAGSARSMGVTVEGL" misc_feature 475844..476269 /locus_tag="Alide_0458" /note="50S ribosomal protein L11; Validated; Region: rplK; PRK00140" /db_xref="CDD:178895" misc_feature 475868..476263 /locus_tag="Alide_0458" /note="Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349" /db_xref="CDD:100101" misc_feature order(475871..475873,475931..475933,476066..476074, 476084..476086,476105..476107,476180..476182, 476195..476203,476213..476215,476222..476227, 476234..476239,476243..476251) /locus_tag="Alide_0458" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:100101" misc_feature order(475871..475873,476015..476017,476021..476032, 476042..476044,476048..476053,476183..476188, 476195..476200) /locus_tag="Alide_0458" /note="L7/L12 interface [polypeptide binding]; other site" /db_xref="CDD:100101" misc_feature order(475919..475921,475931..475933) /locus_tag="Alide_0458" /note="putative thiostrepton binding site; other site" /db_xref="CDD:100101" misc_feature order(476123..476125,476132..476134) /locus_tag="Alide_0458" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:100101" gene 476276..476971 /locus_tag="Alide_0459" /db_xref="GeneID:10102487" CDS 476276..476971 /locus_tag="Alide_0459" /inference="protein motif:TFAM:TIGR01169" /note="KEGG: dia:Dtpsy_3249 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1" /codon_start=1 /transl_table=11 /product="ribosomal protein l1" /protein_id="YP_004125120.1" /db_xref="GI:319761183" /db_xref="GO:0003723" /db_xref="GO:0003735" /db_xref="InterPro:IPR002143" /db_xref="InterPro:IPR005878" /db_xref="GeneID:10102487" /translation="MAKLTKKQKAQQGKVDSTKLYPFAEAVALVKEAATAKFDESIDV AVQLGVDAKKSDQVVRGAVVLPNGTGKTTRVAVFAQGAKAEEAKAAGADVVGMDDLAA QVKAGDMPFDVVIAAPDAMRVVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQ VQFRVDKAGIVHTTIGRRSFADDKLQGNLAALIEALNKAKPATSKGVYLRKVAVSSTM GVGVRVDTQSIAA" misc_feature 476348..476947 /locus_tag="Alide_0459" /note="Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that...; Region: Ribosomal_L1; cd00403" /db_xref="CDD:88601" misc_feature order(476381..476389,476396..476398,476402..476404, 476408..476410,476414..476416,476777..476779, 476783..476785,476789..476791,476927..476932, 476936..476938) /locus_tag="Alide_0459" /note="mRNA/rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88601" gene 477204..477710 /locus_tag="Alide_0460" /db_xref="GeneID:10102488" CDS 477204..477710 /locus_tag="Alide_0460" /inference="protein motif:PFAM:PF00466" /note="PFAM: ribosomal protein L10; KEGG: aav:Aave_4533 50S ribosomal protein L10" /codon_start=1 /transl_table=11 /product="ribosomal protein l10" /protein_id="YP_004125121.1" /db_xref="GI:319761184" /db_xref="InterPro:IPR001790" /db_xref="InterPro:IPR002363" /db_xref="GeneID:10102488" /translation="MSLNRSEKEAVINEVTSLAAKAQTLVIAEYRGITVADMTKLRVA ARSQGVSLSVLKNTLARRAVAGSAFDVVADQMTGPLVYGFSEDAVAAAKVVADFAKTN DKLVIRGGAFAGKALDVNGVKQLANIPSKEVLLAQLCGLLKSPISRTAVVLGALATKK GESEAVAA" misc_feature 477213..477680 /locus_tag="Alide_0460" /note="Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11...; Region: Ribosomal_L10; cd05797" /db_xref="CDD:88597" misc_feature order(477225..477230,477237..477239,477369..477380, 477387..477389) /locus_tag="Alide_0460" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88597" misc_feature order(477468..477470,477537..477539,477546..477548, 477594..477596,477603..477608,477615..477620, 477624..477641,477645..477653,477660..477665, 477669..477674,477678..477680) /locus_tag="Alide_0460" /note="Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site" /db_xref="CDD:88597" gene 477765..478145 /locus_tag="Alide_0461" /db_xref="GeneID:10102489" CDS 477765..478145 /locus_tag="Alide_0461" /inference="protein motif:TFAM:TIGR00855" /note="KEGG: dia:Dtpsy_3247 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 ; ribosomal protein 60S" /codon_start=1 /transl_table=11 /product="ribosomal protein l7/l12" /protein_id="YP_004125122.1" /db_xref="GI:319761185" /db_xref="GO:0003735" /db_xref="InterPro:IPR000206" /db_xref="InterPro:IPR001813" /db_xref="InterPro:IPR013823" /db_xref="GeneID:10102489" /translation="MAFDKDAFLTALDSMTVMELNDLVKAIEEKFGVSAAAMAAPAAG GAAGGAAAAAEEKTEFNVVLAEAGANKVAVIKAVREITGLGLKEAKDLVDGAPKNVKE GIAKADAEAAVKKLVDAGAKAELK" misc_feature 477774..478139 /locus_tag="Alide_0461" /note="Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387" /db_xref="CDD:100102" misc_feature order(477780..477782,477789..477791,477801..477803, 477840..477842,477855..477857) /locus_tag="Alide_0461" /note="peripheral dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(477810..477818,477825..477830,477837..477839, 477846..477848,477891..477893,477900..477905, 477909..477917,477936..477941,478002..478004, 478008..478013,478017..478019,478023..478028, 478068..478073,478077..478079,478086..478088) /locus_tag="Alide_0461" /note="core dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(477822..477824,477831..477836,477846..477848, 477855..477857) /locus_tag="Alide_0461" /note="L10 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(477975..477980,477987..477992,477999..478001, 478020..478025,478032..478034) /locus_tag="Alide_0461" /note="L11 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(477978..477980,477990..477992,477999..478001, 478020..478025,478032..478034) /locus_tag="Alide_0461" /note="putative EF-Tu interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(477978..477980,477987..477992,477999..478001) /locus_tag="Alide_0461" /note="putative EF-G interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" gene 478420..482544 /locus_tag="Alide_0462" /db_xref="GeneID:10102490" CDS 478420..482544 /locus_tag="Alide_0462" /inference="protein motif:TFAM:TIGR02013" /note="KEGG: aav:Aave_4531 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, beta subunit" /protein_id="YP_004125123.1" /db_xref="GI:319761186" /db_xref="GO:0003677" /db_xref="GO:0003899" /db_xref="InterPro:IPR007120" /db_xref="InterPro:IPR007121" /db_xref="InterPro:IPR007641" /db_xref="InterPro:IPR007642" /db_xref="InterPro:IPR007644" /db_xref="InterPro:IPR007645" /db_xref="InterPro:IPR010243" /db_xref="InterPro:IPR019462" /db_xref="GeneID:10102490" /translation="MAQTSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQRDAYTAFLQ AETPPQKRTSEGLQAAFNAAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFAS AVRAKVQLIIYDRESSTAQSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQL HRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVT ILLKAIGLNPESILANFFVNDNFRLMDSGAQMEFVPERLRGEVARFDITDKSGKVVVA KDKRVTARHTRELEQSGTTHISVPEDFLLGRVVARNIVDPDTGEILAKANEELTEALL KKLRSAGVQELQAIYTNELDQGAYISQTLRIDETADEFAARVAIYRMMRPGEPPTEDA VQALFQRLFYNPDTYDLSRVGRMKFNAKVGRSEATGPMVLDNDDILSVVKILVDLRNG KGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEKAVKERLGQAEQEPLMPHDLINSK PISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSALGPGGLTRERAGFEVRDVHVTH YGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRVVDGKVTSEIDYLSAIEEG KYIIAQANAALDEEGRLTGDLVSAREQGESTLVSAERVQYMDVSPAQIVSVAASLVPF LEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAAVDSGTVVTARRGGVVDYVD ATRIVVRVHDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKKGDVLAKGDVIADG ASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELVVMARDTK LGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKLL RAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQIIDDELKRFRLDL NDQLRIVEADAFDRIEKLLVGKKANGGPHKLAKGATIDKEYLAGVEKFHWFDIRPADE AVAAQLESMKNAMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPG DKMAGRHGNKGVVSKITPVEDMPHMADGTPVDIVLNPLGVPSRMNIGQVLEVHLGWAG KGLGQRIGDMLRDQANVAEMRKFLGEVYNSRGRKEDLSQLSDDEVMSMAANLTGGVPY ASPVFDGASEAEIKDMLKLAYPDDIKERKGLTDTRTQAWLIDGRTGERFERPTTIGYM HYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQ EMLTVKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS" misc_feature 478510..>479061 /locus_tag="Alide_0462" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl04593" /db_xref="CDD:156170" misc_feature <479278..>479451 /locus_tag="Alide_0462" /note="DNA-directed RNA polymerase subunit beta'; Provisional; Region: PRK00566" /db_xref="CDD:179068" misc_feature <479527..479817 /locus_tag="Alide_0462" /note="RNA polymerase beta subunit; Region: RNA_pol_Rpb2_1; cl04591" /db_xref="CDD:194918" misc_feature <479722..>480588 /locus_tag="Alide_0462" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653" /db_xref="CDD:73223" misc_feature <480754..>481287 /locus_tag="Alide_0462" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl04593" /db_xref="CDD:156170" misc_feature order(480883..480885,480925..480927) /locus_tag="Alide_0462" /note="RPB11 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(480940..480942,481051..481053,481057..481059, 481069..481077,481081..481083) /locus_tag="Alide_0462" /note="RPB12 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature <481615..482535 /locus_tag="Alide_0462" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653" /db_xref="CDD:73223" misc_feature order(481657..481659,481663..481665,481738..481746, 481753..481755,481759..481764,482158..482181, 482185..482187) /locus_tag="Alide_0462" /note="RPB3 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(481711..481713,481717..481719,481723..481725, 481789..481791,481795..481797,481804..481806, 481813..481815,481828..481830,481840..481842, 482044..482046,482155..482157,482179..482187, 482191..482193,482230..482232,482239..482247, 482251..482256,482317..482325,482335..482337, 482341..482346,482350..482352,482356..482373, 482377..482394,482404..482406,482473..482475, 482485..482487,482491..482493,482497..482502, 482506..482508,482512..482523,482527..482529, 482533..482535) /locus_tag="Alide_0462" /note="RPB1 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(481735..481737,482161..482163) /locus_tag="Alide_0462" /note="RPB11 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(481738..481740,481777..481779,481858..481863, 481867..481869,482110..482112,482194..482196) /locus_tag="Alide_0462" /note="RPB10 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" gene 482565..486794 /locus_tag="Alide_0463" /db_xref="GeneID:10102491" CDS 482565..486794 /locus_tag="Alide_0463" /inference="protein motif:TFAM:TIGR02386" /note="TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: dia:Dtpsy_3245 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, beta' subunit" /protein_id="YP_004125124.1" /db_xref="GI:319761187" /db_xref="GO:0003677" /db_xref="GO:0003899" /db_xref="InterPro:IPR000722" /db_xref="InterPro:IPR006592" /db_xref="InterPro:IPR007066" /db_xref="InterPro:IPR007080" /db_xref="InterPro:IPR007081" /db_xref="InterPro:IPR007083" /db_xref="InterPro:IPR012754" /db_xref="GeneID:10102491" /translation="MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETI NYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM GHIDLAAPCAHIWFLKSLPSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIM SEDDYDAKRKEYGDEFVAKMGAEGIKELLEGIDIEIEIEKLRGDLTGSEVKVKKNAKR LKVLEAFKKSGIKPEWMVLEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSR LRRLLELKAPEIIARNEKRMLQEAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSG RFRQNLLGKRVDYSGRSVITVGPTLKLHQCGLPKLMALELFKPFIFSRLEAMGIATTI KAAKKEVEAGTPVVWDILEEVIKEHPVMLNRAPTLHRLGIQAFEPILIEGKAIQLHPL VCAAFNADFDGDQMAVHVPLSVEAQLEARTLMLASNNVLFPASGEPSIVPSQDVVLGL YHATREKINGKGEGMVFTDIAEVQRALDAGEVELATRISVRLTEWNRNKATGEFEPET KLVETTVGRALLSEILPKGLAFSNLNKALKKKEISRLINASFRKCGLKETVVFADKLL QNGFRLATRAGISICVDDMLVPPQKAEIIGRAEREVKEIEQQYVSGLVTAGERYNKVV DIWGKAGDEVSKVMMQQLAKQKTTDRHGKEVDQESFNSIYMMADSGARGSAAQIRQLA GMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR LVDVTQDLVVTEEDCGTSNGSLMRAIVEGGEVIESLRERILGRVAAEDVLHPETRAVL VPAGRMLDEDLIEEIEAAGVDEVKVRTALTCETRYGLCAKCYGRDLGRGGLINLGEAV GVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGVIGFNATMRYVTNTKGE LVVIARSGEVIIQDEHGRERERHKVPYGATLTVKADQQIKAGTILANWDPLTRPIITE FAGTAKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPLVKLIDGHGQEVK IPGTDHSVTIGFQVGALIQVRDGQEVGPGEVLARIPVEGQKTRDITGGLPRVAELFEA RSPKDKGMLAEITGTVSFGKETKGKVRLQITDPDGKVWDELVPKEKNVLVHEGQVVNK GELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRV VVENPGESSYIAGEQVERSEILNTNEQLQSEGKIPATYTNVLLGITKASLSTDSFISA ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKVKDAMDEAER RAIAEAEAAELASAGAEGAAAEIDGSADAAD" misc_feature 482604..485120 /locus_tag="Alide_0463" /note="DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; Region: RpoC; COG0086" /db_xref="CDD:30435" misc_feature 482613..483584 /locus_tag="Alide_0463" /note="RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997" /db_xref="CDD:147265" misc_feature 483261..484091 /locus_tag="Alide_0463" /note="RNA polymerase Rpb1, domain 2; Region: RNA_pol_Rpb1_2; cl11591" /db_xref="CDD:196263" misc_feature 484023..484493 /locus_tag="Alide_0463" /note="RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983" /db_xref="CDD:147253" misc_feature 484578..484853 /locus_tag="Alide_0463" /note="RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000" /db_xref="CDD:147268" misc_feature 485157..>485378 /locus_tag="Alide_0463" /note="DNA-directed RNA polymerase subunit A''; Validated; Region: PRK04309" /db_xref="CDD:179818" misc_feature 485283..>485378 /locus_tag="Alide_0463" /note="Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429" /db_xref="CDD:142634" misc_feature 485298..485300 /locus_tag="Alide_0463" /note="Rpb1 - Rpb6 interaction site [polypeptide binding]; other site" /db_xref="CDD:132719" misc_feature <485454..486647 /locus_tag="Alide_0463" /note="bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed; Region: PRK09603" /db_xref="CDD:181983" misc_feature <486204..486647 /locus_tag="Alide_0463" /note="Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655" /db_xref="CDD:132721" misc_feature order(486489..486491,486534..486539) /locus_tag="Alide_0463" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:132721" misc_feature order(486579..486581,486597..486599,486615..486617, 486624..486629,486639..486641) /locus_tag="Alide_0463" /note="Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site" /db_xref="CDD:132721" gene 486914..487480 /locus_tag="Alide_0464" /db_xref="GeneID:10102492" CDS 486914..487480 /locus_tag="Alide_0464" /inference="similar to AA sequence:KEGG:Dtpsy_3244" /note="KEGG: dia:Dtpsy_3244 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125125.1" /db_xref="GI:319761188" /db_xref="GeneID:10102492" /translation="MWTTWILLALLLFWAVGAYNRLIRLRSAAMQAFGALDAHMLRWM ALLGEYEASRAAPADSEGAQGAARSAEQDDAHAALWAAATQLSASLAVARARPLDADA AAALSAAAQVLDTAWQTVVREAAQTSEGVAPPALAPWVQRREQVALQSDAARRQFNDA VLLYNHAVAQFPASLLAWLFGLKKGRTL" misc_feature <487367..487465 /locus_tag="Alide_0464" /note="LemA family; Region: LemA; cl00742" /db_xref="CDD:120079" gene 487477..488844 /locus_tag="Alide_0465" /db_xref="GeneID:10102493" CDS 487477..488844 /locus_tag="Alide_0465" /inference="protein motif:TFAM:TIGR00563" /note="KEGG: dia:Dtpsy_3243 sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein" /codon_start=1 /transl_table=11 /product="sun protein" /protein_id="YP_004125126.1" /db_xref="GI:319761189" /db_xref="GO:0008649" /db_xref="InterPro:IPR001678" /db_xref="InterPro:IPR004573" /db_xref="InterPro:IPR018314" /db_xref="GeneID:10102493" /translation="MSAHPHPSPGAASAALSRLLDATASALQAIRAGQSGTAALAATD AALRPAVQALLFQVLRNLGRAQALRRLLAPRKPPPRVDALLCTALALAWEPESAPYEP FTLVNQAVEAAKRSPARHGSAAFINACLRRFLREREGLVAATQGDETAVWNHPAWWIQ RLRRDHPQCWQQILQANNAPAPMVLRVARQKSTSALYQKALAAINIESTAVGGWGVVL ARPVPVQRLPGFDEGVVSVQDAAAQMAAPLLLDGLDAGKSLRLLDACAAPGGKTAHLL EWAAALQAPWQVTALEVDVVRAERIHDNLRRLGLSAQVLVADAGRPEAWWQQASGGEP FDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLAALQARLLAALWPLLKPGGRMLYC TCSVFRAEGDAQIQAFLAHNTDARLLPSAGHLFPGSPDKHGALRDNGPGEHDGFFYAL LQKAA" misc_feature 487558..488838 /locus_tag="Alide_0465" /note="16S rRNA methyltransferase B; Provisional; Region: PRK10901" /db_xref="CDD:182822" misc_feature 488110..488835 /locus_tag="Alide_0465" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 488888..489469 /locus_tag="Alide_0466" /db_xref="GeneID:10102494" CDS 488888..489469 /locus_tag="Alide_0466" /inference="similar to AA sequence:KEGG:Ajs_3893" /note="KEGG: ajs:Ajs_3893 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125127.1" /db_xref="GI:319761190" /db_xref="GeneID:10102494" /translation="MFACLLALWALPSAVRAQHHGEVADLQLERTAEGLLLSAALQLE LPEVVEDALYKGISMHFIAEAEVVRQRWYWSDKTVARATRFLRLNYQPLTRRWRLTQS PVPFAANGLGVSLGQNFEELPDALSAMQRIARWKIADEAQIDEGVPYVVNFQFRLDMS QLPRPLQIGAVGRSGWDIVLARSVRLPAAEAAR" gene 489466..491754 /locus_tag="Alide_0467" /db_xref="GeneID:10102495" CDS 489466..491754 /locus_tag="Alide_0467" /inference="protein motif:PFAM:PF02518" /note="KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004125128.1" /db_xref="GI:319761191" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR017232" /db_xref="GeneID:10102495" /translation="MSDKGIRPAASARKAASRARAMRWALGLGAGVMSAIGLVLLFLL TQATNNRALYERNFAWLLGVNVLVALVLLAVLVWGAVRLAVRLKRGRFGSHLLIKLAG IFGLVGVIPGLLIYVVSYQFVSRSIESWFDVKVEGALSAGVSLARVTLDTIASDLATK TRSASTQLAQVPDAAAGLVLERMRDQLGATDLVLWNAAGQPVAGVGKSRYSLNPERPS VQQFRMARQERISFQIEGLDDISDPMAAENARVRTLVLVANPGVGLLAEPRYVQATLP LPQALVANAIAVQEANREYQERALARVGLRRMYIGTLTLSLFLAVFGAVLLAVVLGNQ LARPLLVLADGVREVAAGNLGPKAALQGKDELGGLTRSFALMTQQLADARSAVEQSMG ELDAARGNLQTILDNLTAGVIVLDRQGVIRSSNPGATRILRAPLAAYEGKPLVEVPGL ADFAATVQRHFDTFALERDHHGLDHWQHPFELHASGGGLAAQGTSLVVRGAELPNDER LLVFDDISEIVSAQRAQAWGEVARRLAHEIKNPLTPIQLSAERLERKLAGKLPDAEQA VLTKSVKTIVDQVDAMKRLVNEFRDYARLPAAELHPLDLNALITDVLHLYDPETAQVP VRAELDERCPLIRGDAQQLRQVVHNLLQNAQDATQQAAEQQGSAPAAVRIGTRWNDAA QRVRLTISDCGPGFPPHILQRAFEPYVTTKPRGTGLGLAVVKKIADEHGARIDLVNRV EGDVVVGAQVSLSFAPETAVAL" misc_feature 489727..491739 /locus_tag="Alide_0467" /note="Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]; Region: NtrY; COG5000" /db_xref="CDD:34605" misc_feature 490468..490611 /locus_tag="Alide_0467" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cd06225" /db_xref="CDD:100122" misc_feature order(490468..490473,490480..490485,490489..490494, 490501..490506,490510..490512,490558..490563, 490567..490572,490579..490584,490588..490593, 490600..490605) /locus_tag="Alide_0467" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100122" misc_feature 490663..490860 /locus_tag="Alide_0467" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 491038..491247 /locus_tag="Alide_0467" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(491053..491055,491065..491067,491077..491079, 491086..491088,491098..491100,491107..491109, 491176..491178,491188..491190,491197..491199, 491209..491211,491218..491220,491230..491232) /locus_tag="Alide_0467" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 491071..491073 /locus_tag="Alide_0467" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 491392..491727 /locus_tag="Alide_0467" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(491410..491412,491422..491424,491431..491433, 491530..491532,491536..491538,491542..491544, 491548..491553,491614..491625,491671..491673, 491677..491679,491704..491709,491713..491715) /locus_tag="Alide_0467" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 491422..491424 /locus_tag="Alide_0467" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(491542..491544,491548..491550,491614..491616, 491620..491622) /locus_tag="Alide_0467" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 491794..492489 /locus_tag="Alide_0468" /db_xref="GeneID:10102496" CDS 491794..492489 /locus_tag="Alide_0468" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_3240 two component transcriptional regulator, fis family; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004125129.1" /db_xref="GI:319761192" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002197" /db_xref="GeneID:10102496" /translation="MANILVVDDELGIRDLLSEILNDEGHSVDLAENATQARSARLSA NYDLVLLDIWMPDTDGVSLLKEWAMAGALTMPVIMMSGHATIDTAVEATRIGAFSFLE KPITMQKLLKAVEQGLARSTAGQPQAAPAPANAAAVPPSGMVLGGNGAQSAAHVTPAA ESLPLSHQGFNLDRPLREARDGFEKAYFEFHLAREGGSMTRVAEKTGLERTHLYRKLR QLGVDLGRNKRSG" misc_feature 491803..492138 /locus_tag="Alide_0468" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 491806..492147 /locus_tag="Alide_0468" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(491815..491820,491947..491949,491971..491973, 492034..492036,492091..492093,492100..492105) /locus_tag="Alide_0468" /note="active site" /db_xref="CDD:29071" misc_feature 491947..491949 /locus_tag="Alide_0468" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(491956..491961,491965..491973) /locus_tag="Alide_0468" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 492100..492108 /locus_tag="Alide_0468" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature <492262..492483 /locus_tag="Alide_0468" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" gene 492551..492626 /locus_tag="Alide_R0006" /note="tRNA-Phe1" /db_xref="GeneID:10102497" tRNA 492551..492626 /locus_tag="Alide_R0006" /product="tRNA-Phe" /db_xref="GeneID:10102497" gene complement(492890..493840) /locus_tag="Alide_0469" /db_xref="GeneID:10102498" CDS complement(492890..493840) /locus_tag="Alide_0469" /inference="similar to AA sequence:KEGG:Dtpsy_3238" /note="KEGG: dia:Dtpsy_3238 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125130.1" /db_xref="GI:319761193" /db_xref="GeneID:10102498" /translation="MVTHDAWALVCRLFAGGTPVLLATLSTREVSALSALGKAVRPKV VDQSFVLCPHCQQHRVQVWSDGRRGRICRCPDCGQVPVEASDGAALALDEDWLRQKMR LALDIESRDGIDDLGDGAWRLGDARRSPVVLARDLTRVLHEPTLLDRVRVAGSNILVI TPRPRTTRGSPFGSGVEWLALEERFTFYGGGITFIPSVPSAAPVVADPAAPVNGPFSA DFKWATLPNVQSTPIHFTQGQAKVFEALWSFKGAEVDGERIMQRAGQKSDKPIDLFKI KSRDKGKPEYEARLAAYVALVVTQQRAGLYSMPCAAAVLA" gene complement(493844..495079) /locus_tag="Alide_0470" /db_xref="GeneID:10102499" CDS complement(493844..495079) /locus_tag="Alide_0470" /inference="similar to AA sequence:KEGG:Dtpsy_3237" /note="KEGG: dia:Dtpsy_3237 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125131.1" /db_xref="GI:319761194" /db_xref="GeneID:10102499" /translation="MKKTFVDVMLELPVDATLRDFLTTHSLPVPDGFAWDDTPETSQF LVEAVKVWPDIAARDRMTANLMASVQLGDAAGKQAMFEAAVTDGAALAGLTLCASDVH RSFWLYVHHPALFERAYDFSFWEQHGQQTQQYDLGLKRQPNGSDANLTALRHAISAFY KRELQCGDGSVAHLVERSPGVFLLSVHVKDMAMLRLEFEGATLKRRVGNPNIHMVLEY AKSTGVVRTLVRGGAKYQQMLVEAFAEHVLGVKASAHKIKSPTLDLSMLRTGFDVPEV FEDGFSMVQLKALTLLSPDTALKIECTAMQSSQQRSVHDLLKEKLPGPLEGQWAVTAA QVNLYYPPEPGRTRPKVVTIEVTSKGRLNLHKFDANMQAQLEGYLVAVGILQKGQTLS AQELPPETDAVSSSSAFED" gene 495325..495654 /locus_tag="Alide_0471" /db_xref="GeneID:10102500" CDS 495325..495654 /locus_tag="Alide_0471" /inference="protein motif:PFAM:PF01381" /note="KEGG: dia:Dtpsy_3236 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain protein" /protein_id="YP_004125132.1" /db_xref="GI:319761195" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10102500" /translation="MASAFGARLRRLREAKKLTLQQVADEVGCTKAYIWELEMKDGQR PSAERVQALARVLGVTMEDIMGEPIEQVPQASPEDVAFFREYAGMTDEEKDRYRQALK IMFPDKS" misc_feature <495385..495516 /locus_tag="Alide_0471" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene 495668..496597 /locus_tag="Alide_0472" /db_xref="GeneID:10102501" CDS 495668..496597 /locus_tag="Alide_0472" /inference="protein motif:PFAM:PF06114" /note="PFAM: protein of unknown function DUF955; KEGG: dia:Dtpsy_3235 protein of unknown function DUF955" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125133.1" /db_xref="GI:319761196" /db_xref="InterPro:IPR010359" /db_xref="GeneID:10102501" /translation="MSASQPITGSIAASTVLKWLRAWHADGMPDAVDLEVVRQMLPET PYGKGVREIKAPMVLDINSCEGMLVRSPQDTAEWGIFYNGKANPERQRFTIAHELGHF ILHRDQRQSFNCDKESVYSGADTIRVIEREADDFASNLLMPGDLLREWISNQRIDLHV LSALAKRFQVSFEALCIRFIKFTTQRAILVYWDNGFVKYEWRSSSAVKTRARIRRTDD PQEPLPGTLAADSTVEQEWDGTEMSAAIWCPEEAPHMKLREFKHSYTTGDRVLTLLLL ESAEPRSWDRSWQDGESFDSFDQFVSNGQLPVR" misc_feature <495905..496204 /locus_tag="Alide_0472" /note="Domain of unknown function (DUF955); Region: DUF955; cl01076" /db_xref="CDD:154183" gene 496744..498270 /locus_tag="Alide_0473" /db_xref="GeneID:10102502" CDS 496744..498270 /locus_tag="Alide_0473" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004125134.1" /db_xref="GI:319761197" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR001584" /db_xref="InterPro:IPR017894" /db_xref="GeneID:10102502" /translation="MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLRAGEA EPHYAKRVSPSKLDPFALKLSGWLKTEAGRSRKQRRTVKQIYADLQALGYTGSYNRVA AFVRLWQEQRLVAQQTTGRGTFVPLAFGPGEAFQFDWSEDWAVLAGVRTKLQVAHFKL SHSRAFYLRAYLLQTHEMLFDAHNHAFVVLGGVPRRGIYDNMRTAIDRVRRGKERDVN ARFAAMVSHFLFEAEFCNPASGWEKGQVEKNVRDARHRLWQVVPPFPSLPDLNAWLEE RCVALWHEIEHGKLAGTVADVWAEERAALMPVPRPFDGFVEHTKRVSPTCLVHFERNR YSVPAPYANRPVSLRVYADRLVVAAEGQIICEHQRLIERNHHGAGQTVYDWRHYLAVL QRKPGALRNGAPFQELPVAFKRLQTALLMQPGGDREMVEVLALVLHHDEQAVLAAVEL ALESGAASKTHILNVLHRLLDGKPAPAPVTSPQALKLAMEPQANVLRYDQLREVRYAS " misc_feature 496765..497610 /locus_tag="Alide_0473" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584" /db_xref="CDD:34222" misc_feature 497125..497514 /locus_tag="Alide_0473" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 498260..499063 /locus_tag="Alide_0474" /db_xref="GeneID:10102503" CDS 498260..499063 /locus_tag="Alide_0474" /inference="protein motif:PFAM:PF01695" /note="KEGG: ctt:CtCNB1_3734 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="istb domain protein ATP-binding protein" /protein_id="YP_004125135.1" /db_xref="GI:319761198" /db_xref="GO:0005524" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10102503" /translation="MRHDPAIASIVIMLRELKMHGMAQAVAELAEQGAPAFEAAQPIL SQLLKAETAEREVRSVAYQLKVARFPAYRDLAGFDFSHSEVNEALVRQLHRCEFLEDA NNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEEEKAQGKTGQMAH RLAYVDLVILDELGYLPFSASGGALLFHLLSKLYERTSVVITTNLSFSEWASVFGDAK MTTALLDRLTHHCHILETGNDSYRFKNSSAQQPPQTTKKEKATKNLSTT" misc_feature 498287..498991 /locus_tag="Alide_0474" /note="transposase/IS protein; Provisional; Region: PRK09183" /db_xref="CDD:181681" misc_feature 498515..498958 /locus_tag="Alide_0474" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 498584..498607 /locus_tag="Alide_0474" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(498587..498610,498770..498772,498869..498871) /locus_tag="Alide_0474" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 498758..498775 /locus_tag="Alide_0474" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 498935..498937 /locus_tag="Alide_0474" /note="arginine finger; other site" /db_xref="CDD:99707" gene 499095..499874 /locus_tag="Alide_0475" /db_xref="GeneID:10102504" CDS 499095..499874 /locus_tag="Alide_0475" /inference="protein motif:PFAM:PF06114" /note="KEGG: bbr:BB2493 phage-related DNA-binding protein; manually curated; PFAM: protein of unknown function DUF955" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125136.1" /db_xref="GI:319761199" /db_xref="InterPro:IPR010359" /db_xref="GeneID:10102504" /translation="MRWKWWVSFAWKSTALAVEGAGVILVREETGVAQIEGLSAWSEV LGRPLILLSADKDNGYRSRFDLAHEIGHLVLHRHIQRTTDSARHKLMEQQAHRFAGAF LLPAETFASEVRVPPTLDDLLLLKRRWGVSAAAIIMRLKALEMLDEDGALMLFKRRSA RWGAKSEPGDEDRRPEQPRLLRRTIDLLVEEKVMPLDAIPRHIGLAAGDVESLAGLPE GYFQGKTNVVEFARLKATQKHVDDQPAQGNKVVPFRPVSKS" misc_feature 499140..499604 /locus_tag="Alide_0475" /note="Domain of unknown function (DUF955); Region: DUF955; cl01076" /db_xref="CDD:154183" gene 499891..500139 /locus_tag="Alide_0476" /db_xref="GeneID:10102505" CDS 499891..500139 /locus_tag="Alide_0476" /inference="similar to AA sequence:KEGG:PputGB1_4812" /note="KEGG: ppg:PputGB1_4812 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125137.1" /db_xref="GI:319761200" /db_xref="GeneID:10102505" /translation="MSKNTKQTSPRIGRLASETLQSSNSSQVAKSLAASALSQRSGDK QTGAKMEDKAARVLASDRYAKETKELAASVLSQANKQR" gene 500160..500621 /locus_tag="Alide_0477" /db_xref="GeneID:10102506" CDS 500160..500621 /locus_tag="Alide_0477" /inference="similar to AA sequence:KEGG:Sbal195_1558" /note="KEGG: sbn:Sbal195_1558 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125138.1" /db_xref="GI:319761201" /db_xref="GeneID:10102506" /translation="MSQDLSDSQLKDLWRQGKIPVIFKRNKPLPVLARIPFAEGNMEW LRDGRRLKPDWCAQFKAWEIPTAWFDSVIKLALRRHQEVYVIQLYREHQKCAPACWNA EGFHCECSCMGENHGGGHPGGNWYEVSETFAVSWGQQRYSCRHLRVTVPSR" gene 500766..502439 /locus_tag="Alide_0478" /db_xref="GeneID:10102507" CDS 500766..502439 /locus_tag="Alide_0478" /inference="protein motif:PFAM:PF00383" /note="PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bpy:Bphyt_3723 CMP/dCMP deaminase zinc-binding" /codon_start=1 /transl_table=11 /product="cmp/dcmp deaminase zinc-binding protein" /protein_id="YP_004125139.1" /db_xref="GI:319761202" /db_xref="GO:0008270" /db_xref="GO:0016787" /db_xref="InterPro:IPR002125" /db_xref="InterPro:IPR016192" /db_xref="GeneID:10102507" /translation="MSVAAKMIKSKDAATPLAAHTKSVDSTFEATASLTPELVVALCG PIGSPLHETATQIKNALNEFGYRTEPIRLSELIRINTDFVGIPIDKSNRYSEIDTLIK AGDELRRQLGNDVLAKMAIAKIGADRRKSYGEFSDRANEGEKSSESRIRTHRICHVID SVKNVDELKLLRLIYGEALIAVGVFSPVEIRKKNLERPGALSSEDIAKLIDTDSGEEF SHGQSVRDTFPQCDFFLRVDEPITGPTEHKAVGQLVEKLRRFFNLIFRTAVVSPTPEE NAMYAAASAARNSACMSRQVGAAVTSKGGELLATGWNDVPSGGGGLYGKPPLFQISTE ERGDERCYAQSGAKCHNDIEKRTIADKIIEALVNDSVLTAENQEKAVQVIMKDSRVKD LIEFSRAVHAEMHAILGASRVAGDRVIAGKVFVTTYPCHSCARHLVAAGISEIYYIEP YRKSLATRLHSDALTEAIDGRGVKLMQFDGVAPRRFIDLFDSGSRKSKAGVLDLKRRD EASPSTHVSLRAIPRLEEVVVAEISSTQLRLPELTTREGTDDQSTPTAA" misc_feature <501915..502136 /locus_tag="Alide_0478" /note="Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members...; Region: cytidine_deaminase-like; cl00269" /db_xref="CDD:185875" misc_feature order(501966..501974,502050..502055,502062..502064) /locus_tag="Alide_0478" /note="active site" /db_xref="CDD:29825" misc_feature order(501966..501968,501972..501974,502053..502055, 502062..502064) /locus_tag="Alide_0478" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:29825" gene complement(503252..503596) /locus_tag="Alide_0479" /pseudo /db_xref="GeneID:10102508" gene 503638..503889 /locus_tag="Alide_0480" /pseudo /db_xref="GeneID:10102509" gene complement(503904..505244) /locus_tag="Alide_0481" /db_xref="GeneID:10102510" CDS complement(503904..505244) /locus_tag="Alide_0481" /EC_number="1.1.1.22" /inference="protein motif:TFAM:TIGR03026" /note="TIGRFAM: nucleotide sugar dehydrogenase; KEGG: dia:Dtpsy_0400 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase" /codon_start=1 /transl_table=11 /product="nucleotide sugar dehydrogenase" /protein_id="YP_004125140.1" /db_xref="GI:319761203" /db_xref="InterPro:IPR001732" /db_xref="InterPro:IPR014026" /db_xref="InterPro:IPR014027" /db_xref="InterPro:IPR017476" /db_xref="GeneID:10102510" /translation="MKVTIFGTGYVGLVQGAVLADVGHDVMCVDVDATKVAALQAGRI PIHEPGLQPMVQANQAAGRLHFTTNAAEGVAHGDLIFLAVGTPPDEDGSADLQHVLAV ARTIARHMAGPKTIVNKSTVPVGTADKVAATVRSALAERGAAIAFEVVSNPEFLKEGA AVADCKRPDRIVIGTASATAERQLRELYSPFNRNHDRMVVMDVRSAELTKYAANAMLA TKISFINEIANLAERLGADIESVRRGIGSDPRIGYSFIYPGAGYGGSCFPKDVKALIR TAQSTGFTPEVLLAVDKRNDAQREVLGKRIVAHYGGSLRGKTIAVWGLAFKPETDDMR EAPSRNLLQALWAAGAQVRAHDPAAMDEARRIFGERADLALCASPAETLQGADCLAIV TEWKIFRVPDFEQLARLLKDRMIFDGRNLYEPEIVARHGLDYYSIGRPTAAVAA" misc_feature complement(503970..505244) /locus_tag="Alide_0481" /note="Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]; Region: Ugd; COG1004" /db_xref="CDD:31208" misc_feature complement(<504942..505238) /locus_tag="Alide_0481" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(504351..504638) /locus_tag="Alide_0481" /note="UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984" /db_xref="CDD:144540" misc_feature complement(503973..504287) /locus_tag="Alide_0481" /note="UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Region: UDPG_MGDP_dh_C; pfam03720" /db_xref="CDD:190725" gene complement(505241..506251) /locus_tag="Alide_0482" /db_xref="GeneID:10102511" CDS complement(505241..506251) /locus_tag="Alide_0482" /inference="protein motif:PFAM:PF01370" /note="PFAM: NAD-dependent epimerase/dehydratase; KEGG: dia:Dtpsy_0401 NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="nad-dependent epimerase/dehydratase" /protein_id="YP_004125141.1" /db_xref="GI:319761204" /db_xref="GO:0003824" /db_xref="GO:0050662" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR008089" /db_xref="GeneID:10102511" /translation="MSVTLVTGCAGFIGMHCAQRLLERGERVVGIDNLNAYYDVGLKH ARLDRLRGQGDFTFEQIDVADRDAMHALFARVRPHRVLHLAAQAGVRYSIDQPDDYTD SNLLGFGNILQGCRAQQVEHLVFASSSSVYGGNAKLPFSERDAVDHPVSYYAATKKAN EVMAHAYAHLYGIPTTGLRFFTVYGPWGRPDMALFKFTRAMLAGEAIDVYGQGRLVRD FTYIDDIVEGVLRVLDKPATPDAGHDPLAPNPGTSTAPYRIFNIGNSTPTLLMDYITA LEAALGTTAIKRMLPIQPGDMHSTAADTAALAAWVGFTPATPVREGVARFVHWYRGFY ES" misc_feature complement(505244..506239) /locus_tag="Alide_0482" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature complement(505253..506239) /locus_tag="Alide_0482" /note="UDP glucuronic acid epimerase, extended (e) SDRs; Region: UDP_GE_SDE_e; cd05253" /db_xref="CDD:187563" misc_feature complement(order(505703..505714,505781..505783, 505793..505795,505868..505876,505943..505945, 505994..506002,506150..506158,506213..506224, 506228..506230)) /locus_tag="Alide_0482" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187563" misc_feature complement(order(505781..505783,505793..505795, 505868..505870,505940..505942)) /locus_tag="Alide_0482" /note="active site" /db_xref="CDD:187563" misc_feature complement(order(505601..505603,505625..505627, 505661..505663,505706..505708,505793..505795, 505868..505870)) /locus_tag="Alide_0482" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187563" gene complement(506248..507765) /locus_tag="Alide_0483" /db_xref="GeneID:10102512" CDS complement(506248..507765) /locus_tag="Alide_0483" /inference="similar to AA sequence:KEGG:Dtpsy_0402" /note="KEGG: dia:Dtpsy_0402 glycosyltransferase" /codon_start=1 /transl_table=11 /product="glycosyltransferase" /protein_id="YP_004125142.1" /db_xref="GI:319761205" /db_xref="GeneID:10102512" /translation="MTASTAPRALSSRLPWTHPLFWFAAISLAHVAMRLLASPALKWD EAEQILWTQELALGYGPQPPLYTWLQWAMNQVFGPSVLALSLLKHGLLALTYSLMYLA GRELLDERGAFWASASMVLMPALGWYSVRDQTHTILVTAMACGAWWLLLRIVRRPRPL DFALLGLVCGFGMLAKYSFALVAGAMLLAALSVPEARRALLSRGWWWAPLVGLLVVLP HAAWLLSHLTEATSGTISKMNIQPENGLVKGLLRLLEGVVPSTLLLWALFALWAFRSA WWQRPLAPVSPPMHRVFVRYLGLVLLALAGMVVFAGVSNFKGRWILPLLCMAPLAAFS ARPELQHHPRARRYTIAVATMAVILLVAAGIRPWFSGLRGEVDELNHPAIELADALRA AGYDGTSPIVASDHMLAGMLRVRFPDALVDACAPGEDEIPTCVADHLRRSVQRGQGLL LISRTDYVPSSWWDQAQARIAPRALQSIHLPFHMVRAGTPQAHYEYIWSPRGTQP" misc_feature complement(<507091..507663) /locus_tag="Alide_0483" /note="4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807" /db_xref="CDD:31992" gene 507869..508900 /locus_tag="Alide_0484" /db_xref="GeneID:10102513" CDS 507869..508900 /locus_tag="Alide_0484" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0411 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_004125143.1" /db_xref="GI:319761206" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10102513" /translation="MNTAPTPTPDVSIVVPIYNEVENLPDLVERIAQAMSAQPLSFEL LAVDDGSRDGSADTLRELAATRPWLRPVFLARNYGQSSALQAGFDRVRGRYVVTLDAD LQNEPGDIPLLLGRLETDSSVDMVSGWRKDRQDAELSRKLPSRIANRLISSATGVHLH DYGCALKAYRRPIIDRIRLYGELHRFIPSLAKEAGARITEVPVRHHARTRGVSKYGID RTFRVILDLILIVFFMRYRQRPLHAFGGLGLWLAAPGVLILAWLLLQKVLGEDIGGRP LLLAGVMLVLMGVQMVVAGLIGELLMRIYHEAGGAPQFHAQEYVPDSRVNMPAARDQQ AQAATNNIA" misc_feature 507887..508696 /locus_tag="Alide_0484" /note="Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463" /db_xref="CDD:30811" misc_feature 507905..508453 /locus_tag="Alide_0484" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature order(507914..507916,507920..507922,508172..508174) /locus_tag="Alide_0484" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133030" misc_feature order(508013..508015,508169..508174) /locus_tag="Alide_0484" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature 508166..508174 /locus_tag="Alide_0484" /note="DXD motif; other site" /db_xref="CDD:133030" gene 508897..509826 /locus_tag="Alide_0485" /db_xref="GeneID:10102514" CDS 508897..509826 /locus_tag="Alide_0485" /inference="similar to AA sequence:KEGG:Ajs_0412" /note="KEGG: ajs:Ajs_0412 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125144.1" /db_xref="GI:319761207" /db_xref="GeneID:10102514" /translation="MKRPFKALLRGLVGLALLGAVVALADPARVWGQLRQAQPGWLLA GLLAGIASNLVSALRWRALARWLGANASTRDACRWYFQAIGLNALLPGAVVGGDVYRA VVLRGAGQDTAASSWSVVLDRLSGLWMLCAIGGLGAAACADVLAPWLRLPRGLFIALM LGGTLLWLALPWCLPALLRSRRFAGGWLAPLREAATRPDFPRQLVWQAGASAAVQLLS AAALAGGGLALGVALPASVWAWAIAPVFLMAALPVSVGGWGTREAAAVAALAPFGVAA SAAVGVGVVYGVYGLAQGALGALAFGLPRSAGR" sig_peptide 508897..508974 /locus_tag="Alide_0485" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 26" misc_feature 508972..>509277 /locus_tag="Alide_0485" /note="Uncharacterised protein family (UPF0104); Region: UPF0104; cl04219" /db_xref="CDD:194802" gene complement(510032..510946) /locus_tag="Alide_0486" /db_xref="GeneID:10102515" CDS complement(510032..510946) /locus_tag="Alide_0486" /inference="protein motif:PFAM:PF00590" /note="PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dia:Dtpsy_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase" /codon_start=1 /transl_table=11 /product="uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase" /protein_id="YP_004125145.1" /db_xref="GI:319761208" /db_xref="GO:0008168" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR008189" /db_xref="InterPro:IPR018063" /db_xref="GeneID:10102515" /translation="MSAARDAAAAQHYPQGALYVVATPIGNLADITLRALHVLQLADT LACEDTRHTQSLLRAYGIDKPSDRLLALHQHNEAQAAQMVVQQLQAGQRVAYVSDAGT PGVSDPGARLVAAVQAAGLRCIPLPGASSVTSALSVAGAVAPTADSGGFLFAGFLPPK GAERTAAVQRLAAEPRCVVLLEAPHRIAALADTLADLGERPVTLARELTKQFEEVSTH PARKLAAWLAGAPQRVKGEFVVLLHPLAATQGDGAEAERVLRLLLDELPTKTAVKLAA DIAHASRNTLYERALQIKRDAEPAGEHG" misc_feature complement(510065..510913) /locus_tag="Alide_0486" /note="Predicted methyltransferases [General function prediction only]; Region: COG0313" /db_xref="CDD:30661" misc_feature complement(510071..510904) /locus_tag="Alide_0486" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene 510970..511368 /locus_tag="Alide_0487" /db_xref="GeneID:10102516" CDS 510970..511368 /locus_tag="Alide_0487" /inference="protein motif:PFAM:PF02021" /note="PFAM: Uncharacterised protein family UPF0102; KEGG: ajs:Ajs_0414 hypothetical protein" /codon_start=1 /transl_table=11 /product="uncharacterized protein family upf0102" /protein_id="YP_004125146.1" /db_xref="GI:319761209" /db_xref="InterPro:IPR003509" /db_xref="GeneID:10102516" /translation="MGFLGKKVNGSAPARTTRAAGQAGEDRALAHLTAAGLALVERNY RTPGRGGGEIDLVMRERDGTLVFVEVRSRGAAGFGGAAASIGAAKRRRIVLAAQHYLL RWPAQPPCRFDAVLIDGGQVQWLRAAFDAQ" misc_feature 510994..511365 /locus_tag="Alide_0487" /note="Uncharacterised protein family UPF0102; Region: UPF0102; cl00516" /db_xref="CDD:186051" gene 511429..512031 /locus_tag="Alide_0488" /db_xref="GeneID:10102517" CDS 511429..512031 /locus_tag="Alide_0488" /inference="similar to AA sequence:KEGG:Dtpsy_0407" /note="KEGG: dia:Dtpsy_0407 phosphoheptose isomerase" /codon_start=1 /transl_table=11 /product="phosphoheptose isomerase" /protein_id="YP_004125147.1" /db_xref="GI:319761210" /db_xref="GeneID:10102517" /translation="MLEQRIQQHFIDGADLKYQAAQALSQPIGAAVQAVLACVTNGAK VLACGSGPSAAQAQQFAAFCVMGFERERPELAALALVSDAVWAAASAAGAGADIAALA RQVRALGQAGDLLLAITTGGSEPALLEAVQAAHERDMTVVALCGRDGGALATLLRETD VQICVPHDRAARVREVHALVLHCLCDGVDAQLLGEQEILS" misc_feature 511456..511998 /locus_tag="Alide_0488" /note="Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006" /db_xref="CDD:88403" misc_feature order(511465..511467,511477..511479,511513..511515, 511522..511524,511582..511584,511600..511605, 511948..511953,511963..511965,511972..511974, 511984..511986,511996..511998) /locus_tag="Alide_0488" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88403" misc_feature order(511576..511584,511783..511791,511798..511800, 511936..511938,511948..511950) /locus_tag="Alide_0488" /note="active site" /db_xref="CDD:88403" gene 512028..512693 /locus_tag="Alide_0489" /db_xref="GeneID:10102518" CDS 512028..512693 /locus_tag="Alide_0489" /inference="protein motif:PFAM:PF04972" /note="KEGG: ajs:Ajs_0416 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region" /codon_start=1 /transl_table=11 /product="transport-associated protein" /protein_id="YP_004125148.1" /db_xref="GI:319761211" /db_xref="InterPro:IPR007055" /db_xref="InterPro:IPR014004" /db_xref="GeneID:10102518" /translation="MKVPMLRTFGSLLAAATLVGSLAACAPLVIGGGAVMGAMVAVDR RTTGTQVEDEGIEMRTASRIREALSENAHVNVTSYNRQVLLTGEVPSAADSQKAEQIA LAVENVRSVVNDLGVMPSSSLSQRSKDTFITGKVRASLVDAKDLSANAFKVVTERNVV YLMGRVTPREAKRSAEIARGVDGVSKVVRVFEVISEEELSRMAAKPAPVSQDPAAAGQ PAK" sig_peptide 512028..512102 /locus_tag="Alide_0489" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.457 at residue 25" misc_feature 512037..512600 /locus_tag="Alide_0489" /note="outer membrane lipoprotein; Provisional; Region: PRK11023" /db_xref="CDD:182907" misc_feature 512208..512384 /locus_tag="Alide_0489" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" misc_feature 512424..512606 /locus_tag="Alide_0489" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" gene complement(512722..513654) /locus_tag="Alide_0490" /db_xref="GeneID:10102519" CDS complement(512722..513654) /locus_tag="Alide_0490" /EC_number="1.1.1.60" /inference="protein motif:PRIAM:1.1.1.60" /note="KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="2-hydroxy-3-oxopropionate reductase" /protein_id="YP_004125149.1" /db_xref="GI:319761212" /db_xref="InterPro:IPR002204" /db_xref="InterPro:IPR006115" /db_xref="InterPro:IPR006183" /db_xref="GeneID:10102519" /translation="MTMNSINPRVYEPAPARRVAFLGLGVMGYPMAGHLARAGHEVTV YNRTATKSEAWCAEFTGAGGTKHAKTPREAAQGAEIIFCCVGNDDDLRSVTLGADGAF AGMQPGAIFVDHTTASAEVARELYGAARTLGLQFVDAPISGGQAGAQNGQLTVMCGGD QAAFDAVRPTGMAFARAFTRIGDSGAGQLAKMVNQVCIAGLVQGLSEAIAFGMHAGLD MPLVLDVIGKGAAQSWQMDNRGKTMALGRFDFGFAVDWMRKDLGLVLDEAKRNGARLP VTALVDQFYGDVQRAGGQRWDTSSLITRLLPAKP" misc_feature complement(512740..513603) /locus_tag="Alide_0490" /note="3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084" /db_xref="CDD:32267" misc_feature complement(<512944..513603) /locus_tag="Alide_0490" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(513735..514871) /locus_tag="Alide_0491" /db_xref="GeneID:10102520" CDS complement(513735..514871) /locus_tag="Alide_0491" /inference="protein motif:TFAM:TIGR01420" /note="KEGG: ajs:Ajs_0418 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E" /codon_start=1 /transl_table=11 /product="twitching motility protein" /protein_id="YP_004125150.1" /db_xref="GI:319761213" /db_xref="GO:0005524" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR006321" /db_xref="GeneID:10102520" /translation="MERDQASKFINDLLKLMVSRGGSDLFITADFPPAIKVDGKVTKV SPQPLTPVHTLTLARSIMSDKQVADFERTKECNFAIAPAGIGRFRANAFIQQGRVGMV LRTIPLTLPTIDGLGVPQVLKEIAMTKRGLCILVGATGSGKSTTLAAMVDWRNENSFG HIVTVEDPIEFVHPHKNCVVTQREVGLDTDSWEAALKNSLRQAPDVILMGEIRDRETM EHAVAFAETGHLCLATLHANSANQALDRIVNFFPEERRAQLLMDLSLNLKAMVSQRLV PKQDGKGRAAAVEVMLNTPLIADLIFKGEVAEIKEIMKKSRNLGMQTFDQSLFDLFEA NVIGYEDALRNADSINDLRLQIKLSSQRAKTTDLASGTEHFAIV" misc_feature complement(513738..514862) /locus_tag="Alide_0491" /note="Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilU; COG5008" /db_xref="CDD:34613" misc_feature complement(513888..514484) /locus_tag="Alide_0491" /note="Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism...; Region: PilT; cd01131" /db_xref="CDD:29997" misc_feature complement(514440..514463) /locus_tag="Alide_0491" /note="Walker A motif; other site" /db_xref="CDD:29997" misc_feature complement(order(514239..514241,514437..514448, 514452..514454)) /locus_tag="Alide_0491" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29997" misc_feature complement(514239..514256) /locus_tag="Alide_0491" /note="Walker B motif; other site" /db_xref="CDD:29997" gene complement(514897..515526) /locus_tag="Alide_0492" /db_xref="GeneID:10102521" CDS complement(514897..515526) /locus_tag="Alide_0492" /inference="protein motif:PFAM:PF00027" /note="KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_004125151.1" /db_xref="GI:319761214" /db_xref="InterPro:IPR000595" /db_xref="GeneID:10102521" /translation="MKGILGLLKSRPQKTGEDSSDSVLFTTAFASQGVDESLLIPWEA RAVEVGAKRLPKSRGGKLLQSLWSKDKYMAHLDQSAVERMERFFEFAAIPPNRDVIRQ DEYGNFMVVLLTGTIAVDRVQPWGEQLRLAETRPGEILGEMSLLDSGIRFSACTTLTD CEVAVLSADAMDEMMSQDPQLAASLVALLARKLSLRLRAVSARLSENQR" misc_feature complement(514987..515310) /locus_tag="Alide_0492" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature complement(order(515068..515076,515101..515106)) /locus_tag="Alide_0492" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature complement(order(514987..514992,515002..515010)) /locus_tag="Alide_0492" /note="flexible hinge region; other site" /db_xref="CDD:28920" gene complement(515591..516634) /locus_tag="Alide_0493" /db_xref="GeneID:10102522" CDS complement(515591..516634) /locus_tag="Alide_0493" /inference="protein motif:TFAM:TIGR01420" /note="KEGG: aav:Aave_0637 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E" /codon_start=1 /transl_table=11 /product="twitching motility protein" /protein_id="YP_004125152.1" /db_xref="GI:319761215" /db_xref="GO:0005524" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR006321" /db_xref="GeneID:10102522" /translation="MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVDALDH KTVHAMVYDIMSDAQRKVYEEFLEVDFSFEIEGLARFRVNAFNQNRGAAAVFRTIPSK ILTLEQLNAPKIFADLALKPRGLVLVTGPTGSGKSTTLAGMINHLNETEYGHILTIED PIEFVHESKKCLVNQREVGPMTLSFSAALRSALREDPDAILVGEMRDLETIRLAMTAA ETGHLVFGTLHTSSAAKTIDRIIDVFPAEEKEMVRAMLSESLQAVISQTLCKLKDGSG RVAAHEIMTGTSAIRNLIREAKVAQMYSTIQTSNSVGMQTLDQNLTDLVRRNIISPAE ARSKAKIPENFPG" misc_feature complement(515606..516634) /locus_tag="Alide_0493" /note="Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilT; COG2805" /db_xref="CDD:32636" misc_feature complement(515672..516268) /locus_tag="Alide_0493" /note="Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism...; Region: PilT; cd01131" /db_xref="CDD:29997" misc_feature complement(516224..516247) /locus_tag="Alide_0493" /note="Walker A motif; other site" /db_xref="CDD:29997" misc_feature complement(order(516023..516025,516221..516232, 516236..516238)) /locus_tag="Alide_0493" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29997" misc_feature complement(516023..516040) /locus_tag="Alide_0493" /note="Walker B motif; other site" /db_xref="CDD:29997" gene 516674..517396 /locus_tag="Alide_0494" /db_xref="GeneID:10102523" CDS 516674..517396 /locus_tag="Alide_0494" /inference="protein motif:PFAM:PF01168" /note="PFAM: alanine racemase domain protein; KEGG: dac:Daci_1069 alanine racemase domain-containing protein" /codon_start=1 /transl_table=11 /product="alanine racemase domain protein" /protein_id="YP_004125153.1" /db_xref="GI:319761216" /db_xref="InterPro:IPR001608" /db_xref="InterPro:IPR011078" /db_xref="GeneID:10102523" /translation="MTTIDRNLQRVHERIAQACAAAGRPPGSVALLAVSKTFGAESVH AAALAGQRAFGENYIQEAVEKMAALRALAPALALQWHCIGPIQSNKTRLVAEHFDWAQ TVDRLKIAQRLSEQRPAHLPPLMVCIQVNVDGGATKSGVGPHDAAALAEAVARLPRLV LRGVMSIPDDAPTFEAQRALHERAAAVFHHIKAQGFEGLGQFDTLSMGMTGDLEAAVA AGSTMVRVGSGVFGARQYAARC" misc_feature 516680..517372 /locus_tag="Alide_0494" /note="Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins; Region: PLPDE_III_Yggs_like; cd06824" /db_xref="CDD:143497" misc_feature order(516773..516775,516779..516781,516842..516844, 516920..516922,517172..517174,517298..517300, 517346..517348,517352..517357) /locus_tag="Alide_0494" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143497" misc_feature 516779..516781 /locus_tag="Alide_0494" /note="catalytic residue [active]" /db_xref="CDD:143497" gene 517437..518567 /locus_tag="Alide_0495" /db_xref="GeneID:10102524" CDS 517437..518567 /locus_tag="Alide_0495" /inference="protein motif:PFAM:PF00266" /note="PFAM: aminotransferase class V; KEGG: dia:Dtpsy_0414 aminotransferase class V" /codon_start=1 /transl_table=11 /product="aminotransferase class v" /protein_id="YP_004125154.1" /db_xref="GI:319761217" /db_xref="InterPro:IPR000192" /db_xref="GeneID:10102524" /translation="MPGLLPDVDPDGLLEFSVVYTDRALNHMSRRFTGVMQDILAALK EVYHAHTAVLVPGSGTFGMEAVARQFANDAKVLIVRNGWFSYRWSQIFDAGGLRGGAV VCKARRQGEGPQAPWAPCPANEVAAAIRAEKPRVVFAPHVETASGIILPDDYIRTVSD AAHEVGALFVLDCVASGAMWVDMDKTGVDVLISAPQKGWSGSPCCAMVMLSARAREAI EATQSSSFSCDLKKWMQIAEGYEKGQHAYHTTMPTDALVRLRDVMLETRAYGFEKVRQ EQVALGAKVRALLESRGFPSVAAEGFKAPGVVVSYTTDPGIQSGKKFIDVGLQTASGV PLQCDEGPDFTTFRVGLFGLEKWHNVDRTVGHLAAALDKILG" misc_feature 517509..518549 /locus_tag="Alide_0495" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(517611..517616,517623..517625,517854..517856, 517950..517952,517959..517961,518016..518018, 518025..518027) /locus_tag="Alide_0495" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 518025..518027 /locus_tag="Alide_0495" /note="catalytic residue [active]" /db_xref="CDD:99742" gene complement(518628..519050) /locus_tag="Alide_0496" /db_xref="GeneID:10102525" CDS complement(518628..519050) /locus_tag="Alide_0496" /inference="similar to AA sequence:KEGG:Aave_0642" /note="manually curated; KEGG: aav:Aave_0642 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125155.1" /db_xref="GI:319761218" /db_xref="GeneID:10102525" /translation="MQDAKAQFAQRLRDAMAAAGYEPKPAVLEREFNTRHWGKPMTLH GVRRWLLGETMPDHRKLATLADWLGVPVQELGYGDEGGHRVREHQPQWHSGLGYQDKE LFDIYLRLPVPKRRLARDVILAIARAHAAEEAERTGKD" misc_feature complement(<518814..519029) /locus_tag="Alide_0496" /note="bifunctional HTH-domain containing protein/aminotransferase; Provisional; Region: PRK13355" /db_xref="CDD:183994" gene 519235..520536 /locus_tag="Alide_0497" /db_xref="GeneID:10102526" CDS 519235..520536 /locus_tag="Alide_0497" /inference="protein motif:PFAM:PF04286" /note="PFAM: protein of unknown function DUF445; KEGG: ajs:Ajs_0423 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125156.1" /db_xref="GI:319761219" /db_xref="InterPro:IPR007383" /db_xref="GeneID:10102526" /translation="MHSFPGLHEVADHAGPRRLALALLVLFAAIFAACNLAPRSLWVD GLKAVAEAAMVGALADWFAVAALFRRIPLPLVGRHTDIVARNKDRIGGNLALFVRDRF LDAPSLVAMIRRHDPAGMLAQWLTAPANAGLLGRQVSRLALMALDTVEDEKIQAFLAQ AARALLGRLDLSRSMASALAALTHQGRHQELLDALLERMGGMVRTEEARAFVADTLVQ WIKREHPLKQKVLPTDWLSGKGAAAITHAVDTLLKAVADDPRHELREVLDGALARLAE RLQNDPDWARRGEELRAWLQNDEALGRYVRDLWAGLRRSLREDLAREDSELSRRVAEM GQWLGMSLAGDAALRVRLNVRLELWAATFAPDVAQSVAEHIRTTVQRWDAQEMAHLVE QHIGRDLQYIRINGTLVGGLIGLVLFTISHAGALWALLDGG" misc_feature 519412..520449 /locus_tag="Alide_0497" /note="Protein of unknown function (DUF445); Region: DUF445; pfam04286" /db_xref="CDD:190933" gene complement(520594..522087) /locus_tag="Alide_0498" /db_xref="GeneID:10102527" CDS complement(520594..522087) /locus_tag="Alide_0498" /inference="protein motif:PFAM:PF01565" /note="PFAM: FAD linked oxidase domain protein; KEGG: dia:Dtpsy_0417 FAD linked oxidase domain protein" /codon_start=1 /transl_table=11 /product="fad linked oxidase domain protein" /protein_id="YP_004125157.1" /db_xref="GI:319761220" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="InterPro:IPR016166" /db_xref="GeneID:10102527" /translation="MTSSPAPTQSERAARQREIVQALSACVPQHALLWQSEDTTPYEC DGLTAYRQRPLVVCLPETEDEVRAVLKTCHALQVPVVARGAGTGLSGGAMPHAMGVTL SLAKFNRILDVDPVSRTARVQCGVRNLAISEAAAPYGLYYAPDPSSQIACTIGGNVAE NSGGVHCLKYGLTVHNVLRVRGFTMEGEPVTFGSEALDAPGYDLLAAVIGSEGMLAVA LEATVRLIPSPQLARCIMASFDDVRKAGDAVAAVIAAGIIPAGLEMMDKPMTAAVEDF VKAGYDLTAEAILLCESDGTPEEVEEEIARMSEVLRGAGATAISVSADEQERMRFWSG RKNAFPASGRISPDYMCMDSTIPRKRLADILLAIQQMEKKYGLRCCNVFHAGDGNLHP LILFDANDPDQLHRCELFGADILETSVAMGGTVTGEHGVGVEKLNSMCTQFTVEENAQ MMGLKHAFDPAGLLNPGKVIPTLNRCAEYGKMLVRGGRLSHPGLPRF" misc_feature complement(520597..522033) /locus_tag="Alide_0498" /note="glycolate oxidase subunit GlcD; Provisional; Region: PRK11230" /db_xref="CDD:183043" misc_feature complement(521509..521928) /locus_tag="Alide_0498" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene complement(522154..523050) /locus_tag="Alide_0499" /db_xref="GeneID:10102528" CDS complement(522154..523050) /locus_tag="Alide_0499" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0418 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125158.1" /db_xref="GI:319761221" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102528" /translation="MAAAPFSASAARRIPPIQCLLTFEALARLRSVTQTADELCVTPS AVSHRVKQLEQILGTRLFGRSDFSLTTEGSSYLAQVREGLSALQRLPGHAVSPGRRRL KLAVTPTFARVILIPRLRQFTETYPEIDLALHVSIPLLDVVAEDADLVVRYGPGHYAD MEHVEIARDVLTPLASPGFVREHGPFERPEDLEGLPLLRSPLEPWRTWFAAAGLAWTE PNEGSQFNDVGLMCDAAAAGMGVAPVRLKLAAPWLEQGTLVRLFDIDAPSPYAHYLCW RAGTMERWECAAFADWLRRSMA" misc_feature complement(522172..523017) /locus_tag="Alide_0499" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(522832..522993) /locus_tag="Alide_0499" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(522172..522750) /locus_tag="Alide_0499" /note="HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432" /db_xref="CDD:176123" misc_feature complement(order(522646..522666,522670..522723, 522727..522750)) /locus_tag="Alide_0499" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176123" misc_feature complement(order(522307..522309,522367..522375, 522721..522723,522727..522732)) /locus_tag="Alide_0499" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176123" gene complement(523050..523898) /locus_tag="Alide_0500" /db_xref="GeneID:10102529" CDS complement(523050..523898) /locus_tag="Alide_0500" /inference="protein motif:TFAM:TIGR00655" /note="KEGG: dia:Dtpsy_0419 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein" /codon_start=1 /transl_table=11 /product="formyltetrahydrofolate deformylase" /protein_id="YP_004125159.1" /db_xref="GI:319761222" /db_xref="GO:0008864" /db_xref="InterPro:IPR002376" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR004810" /db_xref="GeneID:10102529" /translation="MTPAYILTLSCPDRLGLVHAVSGFLLEHGGNIEEAAQYNDDATG LFFMRVQFACSQHDGATLKEHLARFAEPYAMRWSLHAKAEAMRTVLLVSREGHCLNDL LFRVKSGLLPIDVRAIISNHRDFYQLAASYNIPFHHIPVTAATKAQAEARQYEIIESE GAELVVLARYMQVLSNELCARLAGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATA HYVTADLDEGPIIEQDVARADHTDTVEDLTARGRDTESQVLARAVKWHSEHRVLLNGH KTVVFR" misc_feature complement(523053..523898) /locus_tag="Alide_0500" /note="formyltetrahydrofolate deformylase; Reviewed; Region: purU; PRK06027" /db_xref="CDD:180354" misc_feature complement(523668..523883) /locus_tag="Alide_0500" /note="N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); Region: ACT_F4HF-DF; cd04875" /db_xref="CDD:153147" misc_feature complement(523056..523643) /locus_tag="Alide_0500" /note="Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Region: FMT_core_Formyl-FH4-Hydrolase_C; cd08648" /db_xref="CDD:187717" misc_feature complement(order(523221..523226,523233..523238, 523242..523244,523302..523304,523326..523337, 523362..523364,523377..523400,523605..523610, 523623..523625)) /locus_tag="Alide_0500" /note="putative active site [active]" /db_xref="CDD:187717" misc_feature complement(order(523134..523136,523326..523328, 523332..523334,523392..523397,523605..523610)) /locus_tag="Alide_0500" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187717" misc_feature complement(order(523221..523226,523233..523238, 523335..523337,523362..523364,523377..523385, 523389..523391,523398..523400)) /locus_tag="Alide_0500" /note="putative cosubstrate binding site; other site" /db_xref="CDD:187717" misc_feature complement(order(523221..523223,523329..523331, 523335..523337)) /locus_tag="Alide_0500" /note="catalytic site [active]" /db_xref="CDD:187717" gene 523944..526610 /locus_tag="Alide_0501" /db_xref="GeneID:10102530" CDS 523944..526610 /locus_tag="Alide_0501" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: ctt:CtCNB1_4372 diguanylate cyclase/phosphodiesterase with; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004125160.1" /db_xref="GI:319761223" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013655" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10102530" /translation="MGSNAPGAVPRIAPWWGMALYLLAGAVWVAVGDGLLAHWVQDPH LLARWQTFKGWLYVAFTGVLAWWLLTRMRSAERARSALAQERVQIERHAPVGIARVEP AGMRFLSANERLCAWLELPPQAIAQRHFDELVAPDDRASAQRQLQQLLSGQAGHFQGE RLCLRAGGGPPLPVLCTVSLVPAAQDEPAHLLCVLQDMGEINAARAALARSENILRLA LDGSGSGMWDWDLAQRRITGSQGLLRLLRYLGPELPRGLNLLRLVHPEDRHRLHRAVQ RAIAAGVSFDEAARLQRFDGSYCWFQARGQCHRDAQGRPERFSGILTDLTDLRTAEER QRLASTVLDNAVEGVVVADAHARILSINPVVTRVLGYTEEELLGRNPRVFQSGRHDKA FYETMWEAVRRTGHWQGEIWNRRKNGEIFPERMSLSAVRDAQGAVTHYVCMFSDISQE KAQHQRLECLSQCDSLTGLPNRAWFVEQLGQALCQAQVHGEQMAVLLLNLDRFKDVND SYGHAVGDEVLRHITAQVCMSLRPGDLVGRMAGDEIAVLARNLRHSDGAAAVAQHMIA AASKPWRTPDGIEVVAGVSVGISMFPEHARTAEQLLQGAHSAVYGAKARGRGAHCFFD ESMIQAARERLEIEARLRSALAQGHLRLYYQPQVDIAMGRIVGAEALLRWLDPEEGVI SPARFISVAETSGVIGPLGRWVMQEACSQGQRWRAAGLPGIRLAVNVSPYQFQLTDVA ACAAQALEDSGLPPHCLELELTESALAERPEAMRQVLQRLQALGVRIAVDDFGTGYSS LAHLKRFPIDALKIDQGFIRDIPSSADDMAISATIIAMGRSLGLTVLAEGVETPEQLA FLRARGCDSYQGYLCSRPVPAEQFGALLQAQA" misc_feature 524586..524918 /locus_tag="Alide_0501" /note="PAS fold; Region: PAS; pfam00989" /db_xref="CDD:144544" misc_feature 524811..524927 /locus_tag="Alide_0501" /note="Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); Region: PAC; smart00086" /db_xref="CDD:128397" misc_feature 524937..525314 /locus_tag="Alide_0501" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 524982..525284 /locus_tag="Alide_0501" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(525024..525026,525036..525038,525054..525056, 525093..525104,525180..525182,525195..525197) /locus_tag="Alide_0501" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(525084..525086,525096..525098,525120..525122, 525129..525134,525216..525218,525222..525224) /locus_tag="Alide_0501" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 525333..525806 /locus_tag="Alide_0501" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(525438..525440,525567..525569) /locus_tag="Alide_0501" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(525453..525455,525462..525467,525477..525479, 525489..525491,525555..525557,525561..525572) /locus_tag="Alide_0501" /note="active site" /db_xref="CDD:143635" misc_feature order(525543..525545,525627..525629) /locus_tag="Alide_0501" /note="I-site; other site" /db_xref="CDD:143635" misc_feature 525882..526580 /locus_tag="Alide_0501" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(526611..527471) /locus_tag="Alide_0502" /db_xref="GeneID:10102531" CDS complement(526611..527471) /locus_tag="Alide_0502" /inference="protein motif:PFAM:PF04187" /note="PFAM: protein of unknown function DUF399; KEGG: ajs:Ajs_0430 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125161.1" /db_xref="GI:319761224" /db_xref="InterPro:IPR007314" /db_xref="GeneID:10102531" /translation="MRPIIPRLPRPGSLLPPLLLALLMLPGCAALPSAQPPLDAAWQA QLERWPAVDALLLGEQHDAAAHQRWQQGTVRWLAERGRLAALVIEMADAGQGTDGLPP DAGAAQVRAALRWNEDAWPWQRYAPVVMAAVAAGVPVRGGNLPRSRMRAAMQDAALDA HLPPAALALQREAIAEGHCGLLPPDRLMPMVRVQLARDASMARAVLDARQSGRTVLLV AGFGHVRRDLGVPTWLPAWFTSKTAIAQAGQAPSAIESEANYIHATPALAPQDYCAPL RGPGTATPVR" sig_peptide complement(527382..527471) /locus_tag="Alide_0502" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.452 at residue 30" misc_feature complement(526764..527351) /locus_tag="Alide_0502" /note="Protein of unknown function, DUF399; Region: DUF399; cl01139" /db_xref="CDD:154223" gene 527738..530173 /locus_tag="Alide_0503" /db_xref="GeneID:10102532" CDS 527738..530173 /locus_tag="Alide_0503" /inference="protein motif:TFAM:TIGR02504" /note="KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent" /protein_id="YP_004125162.1" /db_xref="GI:319761225" /db_xref="GO:0000166" /db_xref="GO:0004748" /db_xref="GO:0016960" /db_xref="GO:0031419" /db_xref="InterPro:IPR000788" /db_xref="InterPro:IPR013344" /db_xref="InterPro:IPR013509" /db_xref="GeneID:10102532" /translation="MQRETTDLAPSLSTQPISMDVLKEKYFKDGESDVEDLFRRVARA LASVEREDIREAMQARFLDNLRAGAIGAGRIMSAAGTDIQATLINCFVQPVGDCIQGV DDAGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGAMVKGTASMASGPCSYINVFDQ SCSTVESAGARRGAQMGVLRIDHPDVLDFITAKRTPGRWNNFNVSVGVPDAFMQAVEQ DREWELVHSAAPGAELLKEGARQRADGQWIYRTVRARELWDTIMKSAYDFAEPGILFL DQINTDNNLHYTETIQATNPCGEQPLPPYGCCDLGPIILTRFVRNPFGLHGEASFDFD AFEQAVATQVRALDNVLDVTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQ DGRDMAVKIAERMRNAAYRASVELAKEKGAFPKFQADGYLAKGTFASRLPEDIQKQIR KHGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGSKSEYVVEDYA WRLYKTLGGDVNQLPAYFVSAMDMAAADHVAMMEAVQPYVDTAISKTVNVPEDYPYAD FKGLYMQAWHSRLKGLATYRPNSILGAVLEVPAAEAKPAKGEPAPEPAQPVDPMRIVI ESRPKGGLSAVAEKIEYWTQEGQKRLYLIVSFLPVPDGRGGTVDRAIEFFMPVGQSSE SQQWITSSMRLLSLAARGGFLERALSDMRKVAWDRGPVRLGTYQRADGAQVPLWHDSE VAAVAYAVQNILARRADAPQQQVLPLDEPDMPAGMPPAMAGKKCQECGAHAVIRKDGC DYCTQCGALGSCG" misc_feature 527759..529522 /locus_tag="Alide_0503" /note="ribonucleotide reductase-like protein; Provisional; Region: PRK06948" /db_xref="CDD:180772" misc_feature 527783..527989 /locus_tag="Alide_0503" /note="Ribonucleotide reductase, all-alpha domain; Region: Ribonuc_red_lgN; pfam00317" /db_xref="CDD:189500" misc_feature 527927..529501 /locus_tag="Alide_0503" /note="Class II ribonucleotide reductase, dimeric form; Region: RNR_II_dimer; cd02888" /db_xref="CDD:153089" misc_feature order(527951..527956,528002..528004,528107..528115, 528248..528253,528257..528259,528620..528628, 528632..528634,528665..528667,529124..529141) /locus_tag="Alide_0503" /note="active site" /db_xref="CDD:153089" misc_feature order(527987..527989,528056..528061,528068..528073, 528077..528082,528089..528094,528101..528103, 528155..528157,528164..528175,528182..528184, 528197..528199,528206..528208,528215..528220, 528227..528229,528233..528241,528245..528247) /locus_tag="Alide_0503" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153089" misc_feature order(528026..528028,528053..528058,528065..528067, 528101..528103,528140..528142,528158..528160, 528164..528166,528179..528184,528197..528199, 528227..528235) /locus_tag="Alide_0503" /note="effector binding site; other site" /db_xref="CDD:153089" gene 530352..532268 /locus_tag="Alide_0504" /db_xref="GeneID:10102533" CDS 530352..532268 /locus_tag="Alide_0504" /inference="protein motif:PFAM:PF02518" /note="KEGG: dia:Dtpsy_0423 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004125163.1" /db_xref="GI:319761226" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="GO:0046983" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR011712" /db_xref="InterPro:IPR016380" /db_xref="GeneID:10102533" /translation="MRKKPTLSTKLLAMGTVFLLVALASIGFTLWVTWQLEGGAAAVN EAGRLRMNMLRMILAQQNESPQEFARLKQRFNDGLELLRTGDPARPLFVPWNDETRTQ YEHIRSQWLLLQQEWKMSLPQESGAAAVARGDAFVSEIDGFVQAIEVRIMRWTAVLHL FHLFLVALAIGSAVAFMALSYLLVLNPVTRLQQALGRVRQGDLGTRLEVETEDEFGQL AAGFNLMAHALQASHEGLERKVREKTATIEVRNQRLSALYAVSALAGEAGSLEALAQG FVQQIRSVAGSDAAALRWSDEANQRYVLLAADGLPKSLAEEEHCLNTGTCECGQAQER ARMRVIPIVPAGRLQLPHCREAGYETVVSIPVWLHQRLLGEVTLFFRTTLDLSEDMRE LLSTMARHLASSMEGLRATALEREAAVAEERSLIARELHDSIAQSLAFLKIQTQLLRD AVAKGNTEARDRSMAELDVGVRECYADVRELLVHFRTRTQDEDIEEALRATLSKFEHQ TGVAAALSMSGQGLPLAPDVQIQVLHIVQEALSNVRKHAGARHVQLRVQRHPWRFEVQ DDGGGFDPQAVPPDSLHVGLGIMRERAQRIGASLRLESRAGGGGTCVTLELPTAGVDE RLPAATTTPFIAAA" sig_peptide 530352..530435 /locus_tag="Alide_0504" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.869) with cleavage site probability 0.339 at residue 28" misc_feature 530361..532205 /locus_tag="Alide_0504" /note="Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]; Region: NarQ; COG3850" /db_xref="CDD:33640" misc_feature 530901..531044 /locus_tag="Alide_0504" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cd06225" /db_xref="CDD:100122" misc_feature order(530901..530906,530913..530918,530922..530927, 530934..530939,530943..530945,530991..530996, 531000..531005,531012..531017,531021..531026, 531033..531038) /locus_tag="Alide_0504" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100122" misc_feature 531183..531557 /locus_tag="Alide_0504" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 531627..531818 /locus_tag="Alide_0504" /note="Histidine kinase; Region: HisKA_3; pfam07730" /db_xref="CDD:191831" misc_feature 531951..532202 /locus_tag="Alide_0504" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(531963..531965,531975..531977,531984..531986, 532044..532046,532050..532052,532056..532058, 532062..532067,532098..532109,532155..532157, 532161..532163,532179..532184,532188..532190) /locus_tag="Alide_0504" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 531975..531977 /locus_tag="Alide_0504" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(532056..532058,532062..532064,532098..532100, 532104..532106) /locus_tag="Alide_0504" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 532265..532939 /locus_tag="Alide_0505" /db_xref="GeneID:10102534" CDS 532265..532939 /locus_tag="Alide_0505" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_0424 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004125164.1" /db_xref="GI:319761227" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:10102534" /translation="MTVTPITLFLIDDHTLLRRGLVALLSQYGDLRVVGEAGDAAEAL RLLPQLRPDVILLDNHLPGVRGVDAIAGLREASQGSRVIMLTVSEDGEDLGAALRHGA QGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPEPDPGPMPPDDPA PQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAVYAS DRQRAE" misc_feature 532265..532933 /locus_tag="Alide_0505" /note="transcriptional regulator NarL; Provisional; Region: PRK10651" /db_xref="CDD:182619" misc_feature 532289..532633 /locus_tag="Alide_0505" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(532298..532303,532436..532438,532460..532462, 532520..532522,532577..532579,532586..532591) /locus_tag="Alide_0505" /note="active site" /db_xref="CDD:29071" misc_feature 532436..532438 /locus_tag="Alide_0505" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(532445..532450,532454..532462) /locus_tag="Alide_0505" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 532586..532594 /locus_tag="Alide_0505" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 532760..532915 /locus_tag="Alide_0505" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(532760..532762,532799..532807,532829..532834, 532838..532843,532847..532861,532892..532894) /locus_tag="Alide_0505" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(532787..532789,532793..532795,532799..532801, 532892..532900,532907..532909) /locus_tag="Alide_0505" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 533168..534463 /locus_tag="Alide_0506" /db_xref="GeneID:10102535" CDS 533168..534463 /locus_tag="Alide_0506" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0434 major facilitator superfamily transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004125165.1" /db_xref="GI:319761228" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10102535" /translation="MASASHPAAQDPRRNRQAWSVLIVSTLAFTVCFMVWMMFGVIGI PIKKMLNLNSTQFGLLTAMPVLTGSLVRVPLGIWTDRYGGRIVMALLMAATVPAIWFM GSATEYWHFLVIGLFVGLAGGSFSVGTPYVARWFPRQRQGMAMGVYGAGNSGAAVNKF VAPVILVAFGWAAVPHVYAAIMLGTLVLFWLFSYSDPAHLVPSHVKFSDQLKALKDPK VLKYCQYYSIVFGGYVALSLWMVQYYVGEYGLDIRVAALLAACFSLPGGVLRAIGGVL SDKYGAHSVTWWVMWVCWICLFLLSYPQTDFTIVTVDGPKTFHIGLNVYVFTVLMFAL GIAMAFGKASVFKYISDDYPGNIGTISGIVGLAGGMGGFILPIMFGVLMDWTGIRSSA FMLMYGVVWVSLIWMYFTEVRRTDLMASQGTSGTAPASR" misc_feature 533186..534433 /locus_tag="Alide_0506" /note="Nitrate/nitrite transporter [Inorganic ion transport and metabolism]; Region: NarK; COG2223" /db_xref="CDD:32405" misc_feature 533231..534394 /locus_tag="Alide_0506" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(533273..533275,533282..533290,533294..533299, 533348..533350,533357..533362,533369..533371, 533381..533386,533390..533395,533531..533536, 533543..533548,533555..533557,533564..533566, 533600..533605,533612..533617,533630..533632, 533855..533857,533864..533869,533876..533881, 533888..533890,533930..533932,533942..533944, 533954..533956,533963..533965,533975..533977, 534170..534172,534179..534184,534191..534193, 534203..534208,534215..534217,534245..534250, 534257..534262,534269..534274,534281..534283) /locus_tag="Alide_0506" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 534482..535927 /locus_tag="Alide_0507" /db_xref="GeneID:10102536" CDS 534482..535927 /locus_tag="Alide_0507" /inference="protein motif:TFAM:TIGR00886" /note="KEGG: dia:Dtpsy_0426 nitrite transporter; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="nitrite transporter" /protein_id="YP_004125166.1" /db_xref="GI:319761229" /db_xref="GO:0015103" /db_xref="InterPro:IPR004737" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10102536" /translation="MSANSATQRDSRAGRLLTLWTPEDKQFWEREGEAVAKLNLWISV PALFLAFAIWQVWSVVAVNLPALGFKYSTNQLFWLAAAPALSGATLRIFYSFMVPVFG GRRWTALSTASLLIPAIGIGYAVQDNTTGYPTMLVLALLCGLGGGNFSSSMANISFFF PKERKGSALGVNAGLGNLGVSVVQFLSPLVITAGVFGVFGGDSQTIVKNGEHVQVWAQ NAAFIWVPWIAIASVAAWFGMHDIADAKASFAAQAAIFRAKHNWIMCWLYLGTFGSFI GFAAGFPLLIKSQFPDVNPLAYAWLGPLLGALIRPFGGWLSDKVGGGVVTFWNFIVMA LAVLGVLFFLPKGMSAYAFPFGPAQGSFTGFFLMFLVLFCTTGIGNGSTFRMIPVIFL NQKLRLLRGNDEAAQAQAIKDGNTEGAAAVGFAGALGAYGGFFIPKSYGSSIAATGGP EFALWMFAVFYVACIVITWWYYSRKNAEMPC" misc_feature 534497..535906 /locus_tag="Alide_0507" /note="nitrate/nitrite transport protein NarU; Provisional; Region: PRK15034" /db_xref="CDD:184994" gene 535964..539758 /locus_tag="Alide_0508" /db_xref="GeneID:10102537" CDS 535964..539758 /locus_tag="Alide_0508" /inference="protein motif:TFAM:TIGR01580" /note="KEGG: ajs:Ajs_0436 respiratory nitrate reductase alpha subunit apoprotein; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region" /codon_start=1 /transl_table=11 /product="nitrate reductase, alpha subunit" /protein_id="YP_004125167.1" /db_xref="GI:319761230" /db_xref="GO:0008940" /db_xref="InterPro:IPR006468" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="GeneID:10102537" /translation="MSHFLDRLSYFAQPRETFSQGHGQTNGEDRTWEDAYRDRWAHDK VVRSTHGVNCTGSCSWKIYVKGGIVTWETQQTDYPRTRPDLPNHEPRGCARGASYSWY LYSANRVKYPMVRGRLLKHWRAALAVAKSPVDAWAAIVQNDEARREWQKQRGLGGFVR STWDEVNQMIAAANVYTIKQYGPDRIIGFSPIPAMSMISYAAGSRYLNLIGGVPMSFY DWYCDLPPSSPQVWGEQTDVPESADWYNSNFIIAWGSNVPQTRTPDAHFFTEVRYKGA KIVSVTPDYSEVAKLADLWMHPKQGTDAAVAMAMGHVILKEFYFDKRSAYFDDYARRY TDLPLLVVLKEKQLPDGRTAMVPDRYVRASDFGDKLGQSNHPDWKTVAYDVDGKVALP NGSIGFRWGKEGRPDQGLWNLEAKEAQGGNDVKLKLSVLEDGAQAHEVVDVAFPYFGG IESPNFKANDQGGDVIVRRVPITHLELSGEGVAGRVAVATVFDLQVANYGVLRGLAGE ERDDGYDANAPYTPAWQESITGVPRDQVIAVARQFADNADKTHGRSMVIIGAAMNHWY HCDMNYRGIINMLMMCGCIGQSGGGWSHYVGQEKLRPQTGWTALAFALDWIRPPRQQN STSFFYAHTDQWRYEKLGVEEVLSPLADKSGYQGSMIDFNVRSERMGWLPSAPQLQLN PLQVVKDAQAKGVDPKDYVVQSLKDGSLTLSCEDPDNPLNWPRNMFVWRSNILGSSGK GHEYFLKHLLGTTHGVQGKDLGPQEAKPQEVKWHANAPEGKLDLLVTLDFRMSTTCLY SDIVLPTATWYEKNDLNTSDMHPFIHPLSAAVDPAWQARSDWEIYKGFAKAFSEVCEG HLGVEKEVVLTPIMHDTPAELAQPYGVKDWKNGEIDLIPGVTAPQITVVERDYPNTYQ RFTALGPLMDRIGNGGKGISWNTETEVAQLGDLNGRVREEGATQGRPRIVSDIDATEV VMMLAPETNGHVACKAWEALSKQTGRDHVHLALHREDEKIRFRDIQAQPRKIISSPTW SGLESEKVSYNAGYTNVHELIPWRTLTGRQQFYQDHPWMRDFGEGFVSYRPPVHLKTL HEVEGKKPNGNPEIALNFITPHQKWGIHSTYSDNLHMLTLNRGGPVIWLSEDDARRGG IVDNDWVELFNANGAIAARAVVSQRVNPGMVLMYHAQEKIINTPGSEITGTRGGIHNS VTRIVLKPTHMIGGYAQYSYGFNYYGTIGTNRDEFVLVRKMRRVDWMDEEAGQSTASA HA" misc_feature 535964..539713 /locus_tag="Alide_0508" /note="Nitrate reductase alpha subunit [Energy production and conversion]; Region: NarG; COG5013" /db_xref="CDD:34618" misc_feature 536090..>537004 /locus_tag="Alide_0508" /note="Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate...; Region: MopB_Nitrate-R-NarG-like; cd02750" /db_xref="CDD:73319" misc_feature order(536111..536113,536123..536125,536135..536137, 536141..536143,536240..536242) /locus_tag="Alide_0508" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:73319" misc_feature <537521..>537763 /locus_tag="Alide_0508" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature <538130..538513 /locus_tag="Alide_0508" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature <539114..539206 /locus_tag="Alide_0508" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature 539273..539692 /locus_tag="Alide_0508" /note="Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate...; Region: MopB_CT_Nitrate-R-NarG-like; cd02776" /db_xref="CDD:30308" misc_feature order(539285..539296,539303..539317,539504..539506, 539570..539572,539666..539671) /locus_tag="Alide_0508" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:30308" gene 539777..541300 /locus_tag="Alide_0509" /db_xref="GeneID:10102538" CDS 539777..541300 /locus_tag="Alide_0509" /inference="protein motif:TFAM:TIGR01660" /note="TIGRFAM: nitrate reductase, beta subunit; KEGG: dia:Dtpsy_0428 nitrate reductase, beta subunit" /codon_start=1 /transl_table=11 /product="nitrate reductase, beta subunit" /protein_id="YP_004125168.1" /db_xref="GI:319761231" /db_xref="GO:0008940" /db_xref="InterPro:IPR006547" /db_xref="InterPro:IPR017896" /db_xref="GeneID:10102538" /translation="MKIRAQIGMVLNLDKCIGCHTCSVTCKNVWTSRPGMEYAWFNNV ESKPGIGYPKEWENQDKWNGGWTRLADGSIVPRQGGKWKLLMRIFANPNLPQIDDYYE PFTFDYDHLQSAPESKAAPTARPRSLITGQRMEKIEWGPNWEEILGGEFAKRSADVNF EQVQKDMYGQFENTFMMYLPRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRG WRMCVSGCPYKKIYYNWQTGKAEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDA DRIQEAASVERDRDLYEAQLGIFLDPNDPEVIRQAKLDGIADNWLEAARNSPVYKMAV DWKVALPLHPEYRTLPMVWYVPPLSPITSAANAGHVGVNGEIPDVSQLRIPVQYLANM LTAGDTGPVVRALERMLAMRAYQRGLHVDKVQNMAVLQQAGLTVHDVQDMYQVMAIAN YEDRFVIPSTHREYAENAFDVRGGCGFSFGNGCSDGASDVSIFGGKKPRTIPIKAVV" misc_feature 539777..541192 /locus_tag="Alide_0509" /note="nitrate reductase, beta subunit; Region: narH; TIGR01660" /db_xref="CDD:130721" gene 541312..542013 /locus_tag="Alide_0510" /db_xref="GeneID:10102539" CDS 541312..542013 /locus_tag="Alide_0510" /EC_number="1.7.99.4" /inference="protein motif:TFAM:TIGR00684" /note="TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; KEGG: dia:Dtpsy_0429 nitrate reductase molybdenum cofactor assembly chaperone; PFAM: TorD-like chaperone" /codon_start=1 /transl_table=11 /product="nitrate reductase molybdenum cofactor assembly chaperone" /protein_id="YP_004125169.1" /db_xref="GI:319761232" /db_xref="InterPro:IPR003765" /db_xref="InterPro:IPR020945" /db_xref="GeneID:10102539" /translation="MFKKTPESMRLTLRALARLVAYPDAGLRAQMPTLVDALQSEQVL PAARMAELQALVQQICAMDPYEAEERYVDTFDRGRQTSLHLFEHIHGDSRERGPALID LTQTYEKAGLYLDAQELPDHLGVVLEFASTQPAQVAREFLAEMAHILNALFTALQAKG SPYASVVAAVLEAAGEKAQAVAIAPEPGLDEAWAEPEAFDGCATRGQNRPGQPQPLHF VRNARSNPSSQGVSP" misc_feature 541375..541851 /locus_tag="Alide_0510" /note="Nitrate reductase delta subunit; Region: Nitrate_red_del; cl00958" /db_xref="CDD:186283" gene 542010..542738 /locus_tag="Alide_0511" /db_xref="GeneID:10102540" CDS 542010..542738 /locus_tag="Alide_0511" /EC_number="1.7.99.4" /inference="protein motif:TFAM:TIGR00351" /note="TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: dia:Dtpsy_0430 respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit" /codon_start=1 /transl_table=11 /product="respiratory nitrate reductase, gamma subunit" /protein_id="YP_004125170.1" /db_xref="GI:319761233" /db_xref="GO:0008940" /db_xref="InterPro:IPR003816" /db_xref="GeneID:10102540" /translation="MTAWIDHFLFGLYPYICLAVFFIGSWVRFDRDQYTWKSDSSQLL RTGSLRWASNLFHIGVLFLFFGHFVGMLTPHALYEPFISAGNKQLLAMVSGGAAGLLA FIGVTLLLHRRLTDARIRATSKTSDIALLWIFWVQLALGLATIPLSAQHLDGSVMMRL AEWGQRIVTFRSGAVEMLVGTGWIFKAHLFLGMTVFLIFPFTRLVHIWSGFGTLAYVL RPYQLVRARRLNVPAGQNQPRRSL" misc_feature 542019..542690 /locus_tag="Alide_0511" /note="Nitrate reductase gamma subunit; Region: Nitrate_red_gam; cl00959" /db_xref="CDD:163938" gene 542866..543693 /locus_tag="Alide_0512" /db_xref="GeneID:10102541" CDS 542866..543693 /locus_tag="Alide_0512" /inference="protein motif:PFAM:PF00639" /note="PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_0431 PpiC-type peptidyl-prolyl cis-trans isomerase" /codon_start=1 /transl_table=11 /product="ppic-type peptidyl-prolyl cis-trans isomerase" /protein_id="YP_004125171.1" /db_xref="GI:319761234" /db_xref="GO:0016853" /db_xref="InterPro:IPR000297" /db_xref="GeneID:10102541" /translation="MTTTTCGSHACGCGGSAAPVADTPVARINGIALHAPGEQLPEEL LRQRACTELLRQQAQREGLLAQDDAPGMDGATSIAATQAIEQLLERALQVPEPSEEAC RRYHAAHPTLHGEGERLRLRHVLFAVTPGVDVKQLRQRAESVLLDLRCADDGGVRFAE AARQWSNCPSGQQGGELGWLTQADCAPEFAREIFGKAEVGVLSRLVHSRFGLHVVEVC EREAGRALVFEEVQASVALLLRQQAWINALRQYLQLLAGAAEVEGVQLDAADTPLVQ" misc_feature <542986..543651 /locus_tag="Alide_0512" /note="Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]; Region: SurA; COG0760" /db_xref="CDD:31103" misc_feature 543232..543516 /locus_tag="Alide_0512" /note="PPIC-type PPIASE domain; Region: Rotamase; cl08278" /db_xref="CDD:195679" gene 543728..544405 /locus_tag="Alide_0513" /db_xref="GeneID:10102542" CDS 543728..544405 /locus_tag="Alide_0513" /EC_number="4.2.1.1" /inference="protein motif:PRIAM:4.2.1.1" /note="KEGG: dia:Dtpsy_0432 carbonate dehydratase; PFAM: carbonic anhydrase" /codon_start=1 /transl_table=11 /product="carbonate dehydratase" /protein_id="YP_004125172.1" /db_xref="GI:319761235" /db_xref="InterPro:IPR001765" /db_xref="InterPro:IPR015892" /db_xref="GeneID:10102542" /translation="MPDDELLQRLRRFHLDDFPQYREQFQTLVDQGQHPTTLFIGCSD SRLVPYLLTGAGPGELFLVRNVGAFVPPYDGSYGHHGTAAAIEFAVLNLNVSRIVVCG HSHCGAIKALYGDVSPEAKNLQRWLDLGREAVLPVQPGPEALRRTEQRAVVLQLERLM DYPMVRRRVQDGRITLHGWHYVIEEGEVHVFDVQNGGFVAASKAQSSGTGPYPPYVEH DGQVLVD" misc_feature 543752..544300 /locus_tag="Alide_0513" /note="Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeB; cd00884" /db_xref="CDD:48223" misc_feature order(543824..543826,543830..543832,543851..543853, 543857..543865,543899..543901,543908..543910, 543989..543991,544004..544006,544034..544036, 544043..544045,544268..544270) /locus_tag="Alide_0513" /note="active site clefts [active]" /db_xref="CDD:48223" misc_feature order(543851..543853,543857..543859,544034..544036, 544043..544045) /locus_tag="Alide_0513" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:48223" misc_feature order(543854..543865,543869..543871,543875..543886, 543899..543907,543911..543913,543917..543919, 543974..543979,543986..543991,544103..544105, 544268..544270,544274..544279,544283..544285, 544289..544291) /locus_tag="Alide_0513" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48223" gene 544405..545055 /locus_tag="Alide_0514" /db_xref="GeneID:10102543" CDS 544405..545055 /locus_tag="Alide_0514" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: dia:Dtpsy_0434 nitroreductase" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_004125173.1" /db_xref="GI:319761236" /db_xref="GO:0016491" /db_xref="InterPro:IPR000415" /db_xref="GeneID:10102543" /translation="MAGRVEAMQAPPADWAAALLQARQTILPKRLGAPGPDAAQLQAI MAAAAHAPDHGCLLPWRFVLVPQEARTALAEAFAQALRERDPEATPAQQEQAREKAYR APALLLLVVDELRGDPGIAPCERILSAGCAVQNLLLTATALGFGSALTSGKALQSQAL RTLFALQEGERALCFVSVGTVLSRKPGRARPAPAQYVGTLVPGRGVQPWKQERTLA" misc_feature 544471..544944 /locus_tag="Alide_0514" /note="Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-...; Region: Arsenite_oxidase; cd02135" /db_xref="CDD:48382" misc_feature order(544474..544476,544480..544482,544492..544494, 544567..544569,544855..544860) /locus_tag="Alide_0514" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:48382" gene 545052..545471 /locus_tag="Alide_0515" /db_xref="GeneID:10102544" CDS 545052..545471 /locus_tag="Alide_0515" /inference="similar to AA sequence:KEGG:Dtpsy_0435" /note="KEGG: dia:Dtpsy_0435 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125174.1" /db_xref="GI:319761237" /db_xref="GeneID:10102544" /translation="MKTEINSFDDLLRAARAHRERQRLLFVFAGSELPDDATPAQRER FAQGEGGVLVPLMCVDKLPEEIESFDALLRESRQFENPAQPWRLVFTAALSGTPGKAP SDEDADRVLRRMVEAVKTGAFSAYLPFNREGQPVRLG" gene 545525..546073 /locus_tag="Alide_0516" /db_xref="GeneID:10102545" CDS 545525..546073 /locus_tag="Alide_0516" /inference="protein motif:PFAM:PF01814" /note="PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dia:Dtpsy_0436 hemerythrin HHE cation binding domain protein" /codon_start=1 /transl_table=11 /product="hemerythrin hhe cation binding domain protein" /protein_id="YP_004125175.1" /db_xref="GI:319761238" /db_xref="InterPro:IPR012312" /db_xref="GeneID:10102545" /translation="MTTRVSLPGMHTPGAGFDEPFAMLDACHDRVRRSLDLLERLRAY LQDKGCDDSARQAARDVLRYFDIAAPLHHEDEELHVFPPLLAQGGDERLAALVRQLQR DHVRMAERWAEARQPLEQLAQGALQAFAPAHETVLDRFADCYADHLRHEDDSIYPAAR ALLDMDAQQAMGREMAVRRGVR" gene complement(546263..546550) /locus_tag="Alide_0517" /db_xref="GeneID:10102546" CDS complement(546263..546550) /locus_tag="Alide_0517" /inference="similar to AA sequence:KEGG:Ajs_0446" /note="KEGG: ajs:Ajs_0446 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125176.1" /db_xref="GI:319761239" /db_xref="GeneID:10102546" /translation="MQMLYDSDSFVVVHMLPDADRSGATDDTPQPPQLVRHGFEIVDK RSGKEVYLDGSWAELFQQQILAWQLNTPTQEEVEDTLDGYIGLAQNPVVVH" misc_feature complement(546266..546550) /locus_tag="Alide_0517" /note="Protein of unknown function (DUF3567); Region: DUF3567; pfam12091" /db_xref="CDD:152526" gene complement(546684..547835) /locus_tag="Alide_0518" /db_xref="GeneID:10102547" CDS complement(546684..547835) /locus_tag="Alide_0518" /inference="similar to AA sequence:KEGG:Dtpsy_0438" /note="KEGG: dia:Dtpsy_0438 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125177.1" /db_xref="GI:319761240" /db_xref="GeneID:10102547" /translation="MPRRALLLLTTLVLALHWLLLADLPLGGTGQGMPRRMSFHTRMV EPPPPEPEAAPAPPPPAAPRPVRKPRPRPAPPAPEAPEPAPAAPTSTLTDESPAETAP PATEEGTVGAEADAAPEPPQAAASAAAEPTPAASATPAPQEPPAESAGVEIRPPGASG AGASTEPPPVRLPPSTRLTFDVTGEVKRFHYSASAELVWRQDGSRYEARQQIKAFLLG ARSQSSVGQITPRGLRPERFGDKARSERAAHFDFDKHEVIFSANTPRATIGDGAQDRL SVFIQLGAMLAAAPGRYPPGTQITLTTVGARNADRWTFTVDGPETLDLPVGSTPALKL QRLPREDQHYDQKAELWLGTELGYLPVRIRLSQSNGDFVDLLLSGHEAP" sig_peptide complement(547767..547835) /locus_tag="Alide_0518" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.821) with cleavage site probability 0.816 at residue 23" misc_feature complement(546702..547364) /locus_tag="Alide_0518" /note="Protein of unknown function (DUF3108); Region: DUF3108; pfam11306" /db_xref="CDD:192738" gene 548017..549006 /locus_tag="Alide_0519" /db_xref="GeneID:10102548" CDS 548017..549006 /locus_tag="Alide_0519" /inference="protein motif:PFAM:PF01557" /note="PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase" /codon_start=1 /transl_table=11 /product="fumarylacetoacetate (faa) hydrolase" /protein_id="YP_004125178.1" /db_xref="GI:319761241" /db_xref="GO:0003824" /db_xref="InterPro:IPR002529" /db_xref="GeneID:10102548" /translation="MKLATYKDGSRDGQLVVVSRDLGQAHYATGIASRLQQVLDDWNF MAPQLQDLYEQLNAGRARHAFPFDPRQCMAPLPRAYQWADGSAYINHVELVRKARNAE VPASFYTDPLMYQGGSDDFLGPCDDVAVPSEAMGIDFEAEIAVVTGDVRMGASPEQAL DGIRLVMLANDWSLRNLIPAELAKGFGFFQSKPATAFSPVAVTPDELGDAWEGGRVHL TLQSTWNGRKVGMCDAGPEMTFHFGQLIAHIAKTRNVRAGSIVGSGTVSNKDWTRGYS CIAEKRCIEAIQDGQPSTEFMQYGDTIRIEMKGRDGQSLFGAIDQQIVPISEG" misc_feature 548035..548991 /locus_tag="Alide_0519" /note="2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179" /db_xref="CDD:30528" misc_feature 548260..548988 /locus_tag="Alide_0519" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 549163..551367 /locus_tag="Alide_0520" /db_xref="GeneID:10102549" CDS 549163..551367 /locus_tag="Alide_0520" /inference="protein motif:PFAM:PF00515" /note="KEGG: cph:Cpha266_1840 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="tetratricopeptide tpr_1 repeat-containing protein" /protein_id="YP_004125179.1" /db_xref="GI:319761242" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10102549" /translation="MTDSKKPNFNIRFQSPAVPAPGFPSAGVSFRVPTMQPPEPALPD DAQACNTQGNTWLQANRVADAIKAYDRAIALQADYLDPHFNRGNALLRLGRKAEALTA FERAIALAPGLALAHYNRATVLEGMGREQESMDSYRQVLCIEPGHVQAQFNLGCLHLR RKAYGEAVACMDRVLALEPRLAQAHNNRGNALLKSRHLLEAVASFDQALALQPQYADA LVNRGNARLQRKEHAQAFADLDRAIRLNPDQAQSRQLMGTLLRDSKRHEEALQEFQRA WRCNPGQPGLLTDILGAKTAVCDWHNIGAGIDRLGQAVAQRQPGVSPFSVAVLCDDPA LQLQAARNFVAADYPENPLLGPVAPRADGGRIRVGYYSADFHHHATAILMAELFELHD RERFEWFAFSFGPDSQDAMHARVRQAFDHFLDVRDRSDEAVARLSRELGIDIAVDLKG FTQDTRFGIFSYRCAPVQVSYLGYPGTTGADYIDYAIADKVVLPPQARCHFSEKVVYL PHSYQVNDSKRRIADRAFTREALGLPATGFVFCCFNNNYKILPQMLDGWGRILHAVED SVLWLLEDNPAVSRNLLREAQARGIAPQRLVFAQRMPLDEHLARHRLADLFLDTLPCN AHTTASDALWAGLPVLTCAGQSFASRVAASLLHAVGLPELVTETQGAYEARAIALARD AGQLDALRSRLHAQAPASPLFDARRFARDLEAAYVVMHARAVQGLPPEAFKV" misc_feature 549301..549597 /locus_tag="Alide_0520" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(549301..549306,549310..549315,549322..549327, 549412..549417,549421..549426,549433..549438, 549514..549519,549526..549531,549538..549543) /locus_tag="Alide_0520" /note="binding surface" /db_xref="CDD:29151" misc_feature order(549319..549321,549355..549357,549367..549369, 549376..549378,549421..549423,549457..549459, 549469..549471,549478..549480,549523..549525, 549559..549561,549571..549573,549580..549582) /locus_tag="Alide_0520" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 549607..549906 /locus_tag="Alide_0520" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(549607..549612,549616..549621,549628..549633, 549718..549723,549727..549732,549739..549744, 549820..549825,549832..549837,549844..549849) /locus_tag="Alide_0520" /note="binding surface" /db_xref="CDD:29151" misc_feature order(549625..549627,549661..549663,549673..549675, 549682..549684,549727..549729,549763..549765, 549775..549777,549784..549786,549829..549831, 549865..549867,549877..549879,549886..549888) /locus_tag="Alide_0520" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 549760..551328 /locus_tag="Alide_0520" /note="Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]; Region: Spy; COG3914" /db_xref="CDD:33700" misc_feature <550702..551310 /locus_tag="Alide_0520" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" gene complement(551428..553503) /locus_tag="Alide_0521" /db_xref="GeneID:10102550" CDS complement(551428..553503) /locus_tag="Alide_0521" /inference="protein motif:PFAM:PF01568" /note="PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="molybdopterin dinucleotide-binding region protein" /protein_id="YP_004125180.1" /db_xref="GI:319761243" /db_xref="GO:0016491" /db_xref="GO:0030151" /db_xref="InterPro:IPR006655" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:10102550" /translation="MNAPTSPTAAVPAPQLVRGACPHDCPDTCALLTTVENGRAVRVQ GNPAHAQTGGVLCAKVSRYAERTHHANRILTPLKRTGPKGSGQFAPVPWDEALDDIAR RLGAIAACDAQAIVPYSYAGTMGLVQGESMDRRFFHRLGASLLHRSICSTAGGEGLVH TLGGKVGMKVEFFAEARLILIWGSNSIGSNLHFWRIAQQAKRNGARLVCIDPRRTETA EKCHEHLQLRPGTDAALALALMHELIENDWLDHDYITRHTLGWPQLRERALTFPPARA AEVCGLPVEQIRRLARDYGTTKPAAIRLNYGVQRVHGGGNAVRAIACLPALTGAWRQR AGGVLLSSSGAFPVDRARLQRPELLAGRAPRTINMVTIGDDLLRESSPAFGPKIEALV VYNSNPVAVAPDSPKVVRGFAREDLFTVVLEHFQTDTADYADYILPATTQLEHWDVHL AYGHTDVLLNRPAIAPQGQARSNAQIFRDLAARMGFADPCFADTDEQLCRQAYGEAVD FPRLLADGFAPLPVPDAPFAEGGFPTPSGRCEFYSERLARQGLDPLPGHVPNHEAAGS SAAYPLAMISPPARNFLNSTFVSLQSLRDIEGRPLLELHPDDAAARGIADGALVRVFN DRGSYECHATLNGRARPGVVNGLGIWWRKLGHGGTNVNEITSQALTDMGAGPTFYDCA VQVEALAAS" misc_feature complement(551839..553452) /locus_tag="Alide_0521" /note="The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These...; Region: MopB_3; cd02766" /db_xref="CDD:73330" misc_feature complement(551437..553446) /locus_tag="Alide_0521" /note="Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]; Region: BisC; COG0243" /db_xref="CDD:30592" misc_feature complement(order(553333..553335,553417..553419, 553429..553431,553441..553443)) /locus_tag="Alide_0521" /note="putative [4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:73330" misc_feature complement(order(552169..552171,552184..552189, 552223..552225,552232..552240,552313..552321, 552349..552351,552475..552477,552580..552591, 552808..552810,552868..552876,552937..552942, 552949..552951,552955..552960,553051..553059, 553063..553065,553327..553329)) /locus_tag="Alide_0521" /note="putative molybdopterin cofactor binding site [chemical binding]; other site" /db_xref="CDD:73330" misc_feature complement(551449..551796) /locus_tag="Alide_0521" /note="Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum-; Region: MopB_CT; cl09929" /db_xref="CDD:158784" misc_feature complement(order(551467..551472,551518..551520, 551560..551562,551749..551760,551764..551769)) /locus_tag="Alide_0521" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:30307" gene complement(553624..554655) /locus_tag="Alide_0522" /db_xref="GeneID:10102551" CDS complement(553624..554655) /locus_tag="Alide_0522" /inference="similar to AA sequence:KEGG:Veis_1579" /note="KEGG: vei:Veis_1579 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125181.1" /db_xref="GI:319761244" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102551" /translation="MNHCDSAPARVQASRRDVLRLGFGLAAAAGLPGAALAQGGAPWP SKPIRIICGQATGSSNDATARAVGEFITARLGAPVVIENKPGAVGTIAGDTVVRSAPD GYTLLCVLHSQLAQAPVLLSKVPFDPDNDLIPIGAFGTGSSPAVVRSGLPVNSMRELI EYAKKTPVSVGNYGIGSGWQIMVTQLVKDTGAQFNIVNYRGTGPMVLDLMAGNIDVGA GSLAGLAPGLQNGKFRAIHLISGSSRNPALPNLQTWEEAGFTGEAYTATQESNMFLAP KGTPHEVIERLAAVIDASYRESPRIKTLMEQLGQVRPPWTGEDLRQFVRTTWPAYRRL TKALNLQVG" misc_feature complement(553633..554529) /locus_tag="Alide_0522" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(553636..554466) /locus_tag="Alide_0522" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(554696..555604) /locus_tag="Alide_0523" /db_xref="GeneID:10102552" CDS complement(554696..555604) /locus_tag="Alide_0523" /EC_number="4.1.3.34" /inference="protein motif:PRIAM:4.1.3.34" /note="KEGG: cti:RALTA_B1739 citrate lyase/aldolase; PFAM: HpcH/HpaI aldolase" /codon_start=1 /transl_table=11 /product="citryl-CoA lyase" /protein_id="YP_004125182.1" /db_xref="GI:319761245" /db_xref="InterPro:IPR005000" /db_xref="InterPro:IPR011206" /db_xref="GeneID:10102552" /translation="MNRPRRLRRCQLSVPGSSEKMMEKAAGLGVDYVFLDLEDAVAPA EKRPARQKIVRALNTLPWGRTVRCVRVNDLTTEYAYEDIIEVVEGARGNLDVIMLPKA LSAADIQFVDKLLTMMEKKLGLTKRIGLDVLIEEVEGLQQVDAIAAASPRLECLIFGM GDYSASQGVSLKDIGGASGYPGDLWHYQRQKITVAARCNRIDAVDGPYANFKDPAAYE EECRRAMTLGMVGKWAIHPSQVEIAQRVFSPRAEDVVRARRMMAAYDEALAQGLGAVQ FEGKMIDIASVRIVRNLVERADLIGM" misc_feature complement(554699..555571) /locus_tag="Alide_0523" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(555620..556852) /locus_tag="Alide_0524" /db_xref="GeneID:10102553" CDS complement(555620..556852) /locus_tag="Alide_0524" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_1581 formyl-CoA transferase" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004125183.1" /db_xref="GI:319761246" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102553" /translation="MTAPGTPAFGALQGLRVLDLTQMLAGPYATMLLADQGADVIKVE PPGGDATRRHGPFLPGARPFDEGGFGAYFGSVNRNKRSIVVDLKSEAGKAQLIAMVRQ ADVLVENYRAGVMEGLGLSYETLAAHNPRLVYAALRGFGDPRSGETPYTHWPAYDPVA QAMGGIMGVTGPEVGGAPTKIGPGVGDLLPAMYLAYAVAAACWSVQRTGQGQFVDVAM ADAVLALCERIVYQYSAAGVDSRPDGNGHPLLCPFGIFPASDGYVSLGVPNDRFWEPL ARIMGRADLAADPRCASNEARVRHRAFVEAEVGAWTRRHTQAELVRLLGGRIPFGPVL YAQDIFHDPHFQARGMLVPTEQPGAERLLTIAGTPIHMGRTPGGVHRRAPLVDEHAGE ILREFGLQPAPTSPQPSP" misc_feature complement(555641..556837) /locus_tag="Alide_0524" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(556849..557352) /locus_tag="Alide_0525" /db_xref="GeneID:10102554" CDS complement(556849..557352) /locus_tag="Alide_0525" /inference="similar to AA sequence:KEGG:RALTA_B1741" /note="KEGG: cti:RALTA_B1741 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125184.1" /db_xref="GI:319761247" /db_xref="GeneID:10102554" /translation="MTNRAALTSPDNYFEDFPVGRVIRHARGKTVTEMDNVLLTNLVM NTAEGHFNEDRMRQAAPGAIFSQRVVFGGINLSMVIGLASQDTAEQCVREVGLTAIKL SHPVFHGDTLYAYSEVLQADEEPGGATGRVRFRHYGVNQDRKLCVQAERTVILRRRPD PATGATA" misc_feature complement(556876..557319) /locus_tag="Alide_0525" /note="FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal...; Region: FkbR2; cd03451" /db_xref="CDD:48046" misc_feature complement(order(557134..557139,557146..557148, 557203..557205,557212..557214,557218..557220, 557233..557235)) /locus_tag="Alide_0525" /note="putative active site [active]" /db_xref="CDD:48046" misc_feature complement(order(557137..557139,557203..557205, 557212..557214,557218..557220)) /locus_tag="Alide_0525" /note="putative catalytic site [active]" /db_xref="CDD:48046" gene complement(557349..558599) /locus_tag="Alide_0526" /db_xref="GeneID:10102555" CDS complement(557349..558599) /locus_tag="Alide_0526" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: cti:RALTA_B1742 acyl CoA dehydrogenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004125185.1" /db_xref="GI:319761248" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102555" /translation="MNTTPTIDGKGYMTEERIMIRDAARDFTMNEVLPVANQLDGPDG EIPMELRRKMADMGYFGITIPEEYGGMGLGTFEYCLICEQLARGWMSVASLVARAQGG FIKNEMPEEMRRKYLPRVVRGEFLNASALSEPDTGSDLASISCRAELVGDEWVLNGNK YWCTFADGADYINVFARTAKPTHPKKRWEGISCFLIEKKRGEFPPGMVGQPIPKIGYF GWKTFELALNDLRVPRENLIGAPGQAFLIMAKGLETARAHTAARAIGLAQGALEDAIA YARERKQFGMPIAEHQAIRFKIATMATEVEAARQLLHYVCSAIDSGRRCDTEASMVKL FATEMAERVTSEALQIFGGAGYTKLFAVERHWRDARLTKIFEGTSEIQQRIIANNLLG KSVLEDMIASRAFESAAGARTEAA" misc_feature complement(557421..558563) /locus_tag="Alide_0526" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(557424..558557) /locus_tag="Alide_0526" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(557460..557462,557466..557468, 557472..557480,558108..558110,558114..558116, 558207..558209,558213..558215,558291..558293)) /locus_tag="Alide_0526" /note="active site" /db_xref="CDD:173838" gene complement(558604..559107) /locus_tag="Alide_0527" /db_xref="GeneID:10102556" CDS complement(558604..559107) /locus_tag="Alide_0527" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC domain protein dehydratase; KEGG: cti:RALTA_B1743 hypothetical protein" /codon_start=1 /transl_table=11 /product="maoc domain protein dehydratase" /protein_id="YP_004125186.1" /db_xref="GI:319761249" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10102556" /translation="MTTTTDDIVDFLERSAAEWPRGNRFEDFAIGRRFRHHWGRTVTE ADNTLFSTLTLAYNPVYTNAHLARAEGLPGSPVNPLLVFNVVFGLSVEDLSEGGGPFL GVDDLEYLQPVQPGETLYAESEVIQARLADKRPGYGIVQWHTVGRNAAGAPVIAFKRA NLVRTRS" misc_feature complement(558610..559044) /locus_tag="Alide_0527" /note="FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal...; Region: FkbR2; cd03451" /db_xref="CDD:48046" misc_feature complement(order(558868..558873,558880..558882, 558925..558927,558934..558936,558940..558942, 558955..558957)) /locus_tag="Alide_0527" /note="putative active site [active]" /db_xref="CDD:48046" misc_feature complement(order(558871..558873,558925..558927, 558934..558936,558940..558942)) /locus_tag="Alide_0527" /note="putative catalytic site [active]" /db_xref="CDD:48046" gene complement(559104..560483) /locus_tag="Alide_0528" /db_xref="GeneID:10102557" CDS complement(559104..560483) /locus_tag="Alide_0528" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_1585 MmgE/PrpD family protein" /codon_start=1 /transl_table=11 /product="mmge/prpd family protein" /protein_id="YP_004125187.1" /db_xref="GI:319761250" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10102557" /translation="MTTEAAALRAVQGIAARPPGELTDTLAGLMCEGGADAVPDEARE CARHALLDWACVALAGMREPAVRIVARLHDPQWEPSVGLVPFTGPSAPWAVLVNGTAG HALDYDDVNSRMHGHPSVPVVPTALAASALRGCSGRQLLDAVVLGHEAEALVGEQFGG AHYANGFHATGTIGTFGAAAAAAHVLGLTDAQARHALGLAATQAAGLKCMFGTMAKPL HAGKAAMNGLWAARLAQQGFTAAADGIEGAQGFAATQCTGLREAPVVSERWAVQDTLY KYHAACYLTHSAIEALRALLARTRLAPEDVERLDVHVPPGHDSVCNIAAPATGLQVKF SLRHLMAMVAHGRDTADLDAYTDALACDADLVRWRERVQVRFEHLPSPKGARVELHAR GGAVHAHYADVGVPREDLPAQWRALVAKGRAVTRGVLAPGRFDALVRCIETLERQPDL LSLHEAITT" misc_feature complement(559149..560408) /locus_tag="Alide_0528" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene 560689..561564 /locus_tag="Alide_0529" /db_xref="GeneID:10102558" CDS 560689..561564 /locus_tag="Alide_0529" /EC_number="4.1.3.34" /inference="protein motif:PRIAM:4.1.3.34" /note="KEGG: xau:Xaut_1974 citryl-CoA lyase; PFAM: HpcH/HpaI aldolase" /codon_start=1 /transl_table=11 /product="citryl-CoA lyase" /protein_id="YP_004125188.1" /db_xref="GI:319761251" /db_xref="InterPro:IPR005000" /db_xref="InterPro:IPR011206" /db_xref="GeneID:10102558" /translation="MTQATSPIGAMRSVLYMPGDKERALQKIPGLAADVVVLDLEDAV APEKKAEARERIVQTLAEPANAARALVVRTNGVDTPEFAADLQAVARARPAAVLIPKY ETLEALQALRDGLRAAGAPGLPVWAMVETPLGIADIARLADANQAPGEAYPLTTLVIG TNDIARLTGTRMDDGRRHMLAWLSTVLIHAKARGLRVLDGVYNDFSDAEGFAREAAQA RAMGFDGKTLIHPAQIAPAHVAFAPTPEERAWAEKVVQAFALPENQGRGAIKLDGGMV ELLHLEIARRWLAAA" misc_feature 560725..561561 /locus_tag="Alide_0529" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene 561571..562329 /locus_tag="Alide_0530" /db_xref="GeneID:10102559" CDS 561571..562329 /locus_tag="Alide_0530" /inference="protein motif:PFAM:PF09339" /note="PFAM: regulatory protein IclR; KEGG: rcu:RCOM_0002820 Transcriptional regulator kdgR, putative" /codon_start=1 /transl_table=11 /product="regulatory protein iclr" /protein_id="YP_004125189.1" /db_xref="GI:319761252" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10102559" /translation="MASVPDANVKSATRVLELLEFFAEHRRPMSTADVVNELGYPQSS STVLLQTLMRLRYLDYDRKSRKYFPTVRVALLGSWITENLYSERSLSKIVNDLHARTS ATVILGLQNDIYVQYINVCQTPQRRSQLKWYLKPGSLRPLARSSVGKAVLSSKPDAEL IYLLRRINASETRPENRVSEADLLEEMDRIRETGYSLTTGTVNPQAGVVACLIPSHPQ QPVMALGIGAENAELLRNKDRYLHLLREALEPFC" misc_feature 561598..562311 /locus_tag="Alide_0530" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 561601..561756 /locus_tag="Alide_0530" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 561979..562311 /locus_tag="Alide_0530" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 562431..563636 /locus_tag="Alide_0531" /db_xref="GeneID:10102560" CDS 562431..563636 /locus_tag="Alide_0531" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="TIGRFAM: amidohydrolase; KEGG: dia:Dtpsy_0444 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004125190.1" /db_xref="GI:319761253" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="InterPro:IPR017439" /db_xref="GeneID:10102560" /translation="MKVIDSIAAAAPAIAAVRRDIHAHPELCFKEERTADLIAAKLTE WGIPIHRGLGTTGVVGIVHGRDGGACGRAVGLRADIDALPMQEFNTFAHASKHAGKMH ACGHDGHTAMLLAAAQHLAGHRDFDGTVYLIFQPAEEGGGGAREMIKDGLFERFPMQA VFGMHNWPGMPAGSFAVSPGPVMASSNEFKITIHGKGSHGAMPHLGIDPVPVACQMVQ AFQTIISRNKKPIEAGVISVTMIRAGEATNVVPDFCVLQGTVRTFSIELLDMIERRMR QVAEHTCAAFEATCEFEFLRNYPPTVNSAAEAEFARRVMAGIVGADKVLAQEPTGGAE DFSFMLQAKPGAYVFIANGDGTHRDMGHGAGPCTLHNPSYDFNDALIPLGGTYWVELA RQWLAQPAA" misc_feature 562479..563621 /locus_tag="Alide_0531" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature 562482..563612 /locus_tag="Alide_0531" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature order(562740..562742,562746..562748,562845..562847, 562923..562925,563538..563540) /locus_tag="Alide_0531" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature order(562992..562994,563058..563063,563073..563075, 563082..563084,563091..563093,563142..563162, 563172..563177,563181..563183,563199..563207) /locus_tag="Alide_0531" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene 563705..563962 /locus_tag="Alide_0532" /db_xref="GeneID:10102561" CDS 563705..563962 /locus_tag="Alide_0532" /inference="protein motif:PFAM:PF00887" /note="PFAM: acyl-coA-binding protein ACBP; KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP" /codon_start=1 /transl_table=11 /product="acyl-CoA-binding protein acbp" /protein_id="YP_004125191.1" /db_xref="GI:319761254" /db_xref="GO:0000062" /db_xref="InterPro:IPR000582" /db_xref="GeneID:10102561" /translation="MSDLNAAFEAAVANSKLLTERPDNPTLLKIYALYKQATAGDNAE KKPSFSDIVGRAKWDAWEKLKGTASDAAKQQYIDLIESLRG" misc_feature 563714..563953 /locus_tag="Alide_0532" /note="Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a...; Region: ACBP; cl00221" /db_xref="CDD:193717" misc_feature order(563738..563740,563747..563752,563756..563758, 563765..563770,563774..563776,563783..563788, 563792..563797,563804..563809,563858..563863, 563870..563875,563930..563932) /locus_tag="Alide_0532" /note="acyl-CoA binding pocket [chemical binding]; other site" /db_xref="CDD:29555" misc_feature order(563750..563752,563795..563797,563804..563809, 563873..563875,563930..563932) /locus_tag="Alide_0532" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:29555" gene complement(563965..565068) /locus_tag="Alide_0533" /db_xref="GeneID:10102562" CDS complement(563965..565068) /locus_tag="Alide_0533" /inference="protein motif:PFAM:PF10023" /note="PFAM: aminopeptidase; KEGG: dia:Dtpsy_0447 zinc protease protein" /codon_start=1 /transl_table=11 /product="aminopeptidase" /protein_id="YP_004125192.1" /db_xref="GI:319761255" /db_xref="InterPro:IPR014553" /db_xref="GeneID:10102562" /translation="MQRIASSLLIPLLALLLSGCAHSGGTPGYYWQSLRGHLALLQAA RPVQEWIDSPDTPAPLRARLELARKARAFSITDLALPDNASYRRYARLDRRAAVWNVV AAGPYSLELHRWCFPVTGCIGYRGYFDEADARAEAARLAATGLEVNVYGVPAYSTLGY SNWLGGDPLLSTFIAWPEGDFVRLLFHELAHQQVYAEGDTAFNESYATAVERLGVQRW LERHATPAVRAQFAASEQRRAQFRALTRATRERLAAIYEQKSDTTPDHTALAAMKSEA MLQFHANYALLRSRWLAAHTPPAQLAPLDQWVREANNASFAAQGAYDDLVPAFVALFE REGRDWPRFHAAVRALAKMPQPGREEALKALAG" sig_peptide complement(564997..565068) /locus_tag="Alide_0533" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 24" misc_feature complement(563980..565014) /locus_tag="Alide_0533" /note="Predicted aminopeptidase (DUF2265); Region: DUF2265; cl01778" /db_xref="CDD:154584" gene 565075..565734 /locus_tag="Alide_0534" /db_xref="GeneID:10102563" CDS 565075..565734 /locus_tag="Alide_0534" /EC_number="3.2.2.20" /inference="protein motif:PRIAM:3.2.2.20" /note="KEGG: ajs:Ajs_0457 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase" /codon_start=1 /transl_table=11 /product="DNA-3-methyladenine glycosylase i" /protein_id="YP_004125193.1" /db_xref="GI:319761256" /db_xref="InterPro:IPR005019" /db_xref="GeneID:10102563" /translation="MQNTAMPDTTDTGLFTDDGGHARCFWCRASPLYRHYHDHEWGFP VADERRLFEKLCLEGFQAGLSWITILNKREAFRAAMANFEAEELARFGPAEVERLMGI AAIVRHRGKIESAINNARRVLELRGEFGSLAAYVWRYAPQAAQDRPGRMTLEAVRALT TSAASAALSKDLKKRGFSFVGPTTMYAFMQAMGLVNDHIEGCGARAAAHAARAAFAPP Q" misc_feature 565150..565680 /locus_tag="Alide_0534" /note="Methyladenine glycosylase; Region: Adenine_glyco; cl01059" /db_xref="CDD:194022" gene complement(565868..566029) /locus_tag="Alide_0535" /db_xref="GeneID:10102564" CDS complement(565868..566029) /locus_tag="Alide_0535" /inference="similar to AA sequence:KEGG:Dtpsy_0450" /note="KEGG: dia:Dtpsy_0450 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125194.1" /db_xref="GI:319761257" /db_xref="GeneID:10102564" /translation="MGNKIVTEADRKRTPRPTPMPGMPVATHGRGQRVSLERGTATRS KKNPGKRHG" gene 566310..567608 /locus_tag="Alide_0536" /db_xref="GeneID:10102565" CDS 566310..567608 /locus_tag="Alide_0536" /EC_number="2.1.1.79" /inference="protein motif:PRIAM:2.1.1.79" /note="KEGG: ajs:Ajs_0460 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase" /codon_start=1 /transl_table=11 /product="cyclopropane-fatty-acyl-phospholipid synthase" /protein_id="YP_004125195.1" /db_xref="GI:319761258" /db_xref="InterPro:IPR003333" /db_xref="GeneID:10102565" /translation="MKHLLNSLESSLAQSPVGIAVELPGGLRLGNANADLRLRFRDRM AVVALAMGEIGNVGAAIVEGRVALEGSMRQLMAAAAAMLRSDPARDEQVAWWRRVLLR ARSMAAHTRARDAQHIQYHYDLSDDFYALWLDPRRVYSCAYFRADGMTLAQAQEAKLD HICRKLMLRPGERFLDIGAGWGGLLLWAAQHYGVDATGITLSRNQHAHVQRLIEERGL QGRVRMQLLDYRVLQVPEPFDKIASVGMFEHVGHAQMGHYFATVHRLLRPGGLLMNHG ITAGGLDNAAGLGAGMGDFIERYIFPGGELMHVSRALQEMARAGLEMVDTENLRPHYA RTLWAWSDRLETRLDEARRILVDQHGQEQGEKALRAYRLYLAGCALAFEHGWVALHQV LAARPTGEVAAGALAGAQSDYPFNRAYMYEDRAAAHAAAS" misc_feature 566634..567485 /locus_tag="Alide_0536" /note="Mycolic acid cyclopropane synthetase; Region: CMAS; pfam02353" /db_xref="CDD:145480" misc_feature 566826..567128 /locus_tag="Alide_0536" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(566838..566858,566907..566912,566982..566990, 567039..567041) /locus_tag="Alide_0536" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 567630..567950 /locus_tag="Alide_0537" /db_xref="GeneID:10102566" CDS 567630..567950 /locus_tag="Alide_0537" /inference="protein motif:PFAM:PF08895" /note="PFAM: Domain of unknown function DUF1840; KEGG: dia:Dtpsy_0452 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125196.1" /db_xref="GI:319761259" /db_xref="InterPro:IPR014991" /db_xref="GeneID:10102566" /translation="MLFKFKSRATADLIMLEPNGRQLLEIIGKTPDPHGIVTAAQIPA AIAALEAAVAADEANAGAPAEEAEGADGEQQPPRDTVRLRQRAAPFIDMLRRSAAEDH DVVW" misc_feature 567630..567947 /locus_tag="Alide_0537" /note="Domain of unknown function (DUF1840); Region: DUF1840; pfam08895" /db_xref="CDD:192175" gene complement(567973..568989) /locus_tag="Alide_0538" /db_xref="GeneID:10102567" CDS complement(567973..568989) /locus_tag="Alide_0538" /inference="similar to AA sequence:KEGG:Ajs_0462" /note="KEGG: ajs:Ajs_0462 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125197.1" /db_xref="GI:319761260" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102567" /translation="MHIDTPRRQSLRAIAAAFALGLGAAGAAQAQATWPTKPVRIVVP FAAGGTTDILARAIAPELGKAFGQQFIVDNRGGAGGNIGAELVAKSAGDGYTLLMGTV GTHGINRALYARLPYDPIKDFAPITLVASVPNVMVMNTEKARALGIGNVQDFIRYAKA NPGKLNMASSGNGTSIHLAGELFKTMTGTFMLHMPYRGSAPALLDMVGGNMDVMFDNL PSSMAHIKAGKLKALAVTSAQRSAALPDVPTVEEAGGPALKGFEASSWFGLLAPAGTP PDVVQRIQQEVAKALASPAVKERLLAQGAIPGGNTPAEFAGLIDSEHRKWAQVVKASG AKVD" sig_peptide complement(568897..568989) /locus_tag="Alide_0538" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.874 at residue 31" misc_feature complement(567988..568893) /locus_tag="Alide_0538" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(567985..568827) /locus_tag="Alide_0538" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(569132..570121) /locus_tag="Alide_0539" /db_xref="GeneID:10102568" CDS complement(569132..570121) /locus_tag="Alide_0539" /inference="similar to AA sequence:KEGG:Vapar_5015" /note="KEGG: vap:Vapar_5015 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125198.1" /db_xref="GI:319761261" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102568" /translation="MNHPFKLVLGAAAILAAFGVCAQTYPAAGKTITIVVPFTAGGPT DRVARDLAEALRKPLGGATIVVDNTAGAGSSIGMAKVARAAPDGYTLLLNHIGMATVP SMYRKLPFNVENDFEYLGIINDVPMTLIGKPTLPANNYKELTAWIAANKGKVNLANAG LGSASHLCGLMFQSALQTEMTSVPYKGAAPAIADLMGNQVDLLCDQTTNTTSQIEAKK VKAYAVTTPKRLATPALKGLPTLQELGLKDFQVTIWHGLYAPKGTPAAVVKTINDALK VALKDPQFVKNEEALGAVVTTDKRLEPAEHKKFVQAETAKWGAVIKAAGSYAD" misc_feature complement(569138..570121) /locus_tag="Alide_0539" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" sig_peptide complement(570053..570121) /locus_tag="Alide_0539" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.989 at residue 23" misc_feature complement(569147..569983) /locus_tag="Alide_0539" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(570248..571495) /locus_tag="Alide_0540" /db_xref="GeneID:10102569" CDS complement(570248..571495) /locus_tag="Alide_0540" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_0455 phenylacetate-CoA ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004125199.1" /db_xref="GI:319761262" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10102569" /translation="MNKFYDALETRSSAEREADQMAALARQIAHAQQAAPAFAEILAG IDAGSIASRGALAQLPVTRKYELQQRQQAGRAESPFGGFAGMGFGSAMPRVFASPGPI YEPEGARRDYWRMARALYAAGFRAGDLVHNCFSYHFVPAGSMMETAAHALGCTVFAGG TGQTEQQVQAMADLRPAGYVGTPSFLKIILEKAAEMAVELPSVTKALFSAEAFPPSLR DWFAERGVTGFQCYGTADLGLIAYETEAREGLVLDEGVIVEIVRPGTGDPVPEGEVGE LVVTTLNPDYPLIRFGTGDLSAVLPGACPTGRTNTRIKGWLGRADQTTKVRGMFVQPG QVAAVVKRFPQVQRARLVVSGEMANDQMVLQVETTETAAGLAQLLAEALREVTKLRGE VQMLPPGSLPNDGKVIEDARSYR" misc_feature complement(570398..571369) /locus_tag="Alide_0540" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(571586..572428) /locus_tag="Alide_0541" /db_xref="GeneID:10102570" CDS complement(571586..572428) /locus_tag="Alide_0541" /inference="protein motif:PFAM:PF00005" /note="KEGG: ctt:CtCNB1_4329 high-affinity branched-chain amino acid transport ATP-binding protein LivF; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125200.1" /db_xref="GI:319761263" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10102570" /translation="MSAASQPTAAPAASATPLVEVNGIEVIYNHVILVLKGVSLKVPH HSIVALLGGNGAGKTTTLRAISNLLKGERGEVTKGGITLEGERIENLSPADLVKRGVV QVMEGRHCFAHLTIEENLLTGAYTRSDRGEIAANLEKVYSYFPRLKTRRTSQAAYTSG GEQQMCAIGRAIMSNPRMVLLDEPSMGLAPQIVDEVFHIVKDLNSKEKVTFLLAEQNT NMALKYSDYGYIMESGRIVMDGPAQELANNEDVKEFYLGMGGGERKSFKDVKSYKRRK RWLA" misc_feature complement(571655..572377) /locus_tag="Alide_0541" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature complement(571685..572371) /locus_tag="Alide_0541" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature complement(572252..572275) /locus_tag="Alide_0541" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature complement(order(571781..571783,571880..571885, 572111..572113,572249..572257,572261..572266)) /locus_tag="Alide_0541" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature complement(572111..572122) /locus_tag="Alide_0541" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature complement(571928..571957) /locus_tag="Alide_0541" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature complement(571880..571897) /locus_tag="Alide_0541" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature complement(571862..571873) /locus_tag="Alide_0541" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature complement(571775..571795) /locus_tag="Alide_0541" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene complement(572568..573881) /locus_tag="Alide_0542" /db_xref="GeneID:10102571" CDS complement(572568..573881) /locus_tag="Alide_0542" /inference="similar to AA sequence:KEGG:Daci_1155" /note="KEGG: dac:Daci_1155 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125201.1" /db_xref="GI:319761264" /db_xref="GeneID:10102571" /translation="MMFKKAAIAAATVAAGMGALLGSPAAQAQEQFQPLLVYRTGQFA PLGIPWADGKQDYLKLVNARGGINGVKIAFEECETAYDTAKGVECYERLKSRPGGTAS FDTQSTGITYAVSDKAPGDKATIVTAGYGLSQSADGRVFEWNFPLLGTYWTAADSIIQ DILKKEKGSLKGKKIALVYHDSPYGKEPIPLLEKRAAKEGFELLKLPVTAPGVEQKST WLQVRQQRPDYVLLWSAGVMTPTAVREAQATGYAREKIYGIWWAGSDHDVKDIGAGAK GYNTVTIHNTAEHDKVHDEVKAQLYDKGQGTAKDAKELGAMAHTRGMVISMLQVEAIR TAQEKFGKGKVMTSEQVRWGLENLNLTQERLNELGFGKILKPIKTSCENHMGTDWSRI AQWDGAKWVAVSDWYQADKSLIDPLVKEYGEKYAKEKNLKVRSCS" sig_peptide complement(573795..573881) /locus_tag="Alide_0542" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 29" misc_feature complement(572721..573782) /locus_tag="Alide_0542" /note="Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_ligand_binding_like_1; cd06334" /db_xref="CDD:107329" misc_feature complement(572673..573767) /locus_tag="Alide_0542" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(order(573102..573104,573177..573179, 573330..573332,573489..573497,573558..573566)) /locus_tag="Alide_0542" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107329" gene complement(573940..575004) /locus_tag="Alide_0543" /db_xref="GeneID:10102572" CDS complement(573940..575004) /locus_tag="Alide_0543" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: ctt:CtCNB1_4327 membrane protein" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004125202.1" /db_xref="GI:319761265" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10102572" /translation="MFYRENGQFKTSYSADQQIFAVTQDRIAIGLILAVAFVVVPMVA SDYFFQAILIPLLIMSLGALGLNILVGYCGQISLGTAAFMAVGAYAAYNLQARFDGMP LLLALIGGGLIAMVFGVVFGLPSLRIRGLYLAVATLAAQFFVDWITTRADWVTNNSSS GSVSAKALAIAGWQIDTPMEKYLLCLGILCVLGLAAKNLVRSSVGREWMAMRDMDVAA AVIGIRPVYAKLSAFAVSSFIVGIAGALWGFVHLGAWEPAAFSLDRSLQLLFMVIIGG LGSIMGSIFGAAFFILLPLLLNQVPHWLGLPISTATATYLEHMIFGALIVFFLIVEPH GLAKLWSTARQKLRVWPFPH" misc_feature complement(573994..574836) /locus_tag="Alide_0543" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature complement(574303..574359) /locus_tag="Alide_0543" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene complement(575026..575955) /locus_tag="Alide_0544" /db_xref="GeneID:10102573" CDS complement(575026..575955) /locus_tag="Alide_0544" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: ctt:CtCNB1_4326 high-affinity branched-chain amino acidtransport system permease protein LivH" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004125203.1" /db_xref="GI:319761266" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10102573" /translation="MGFFLETLIGGLMVGTLYALIAIGFVLIFKASGVFNFAQGAMVL FSALAMARFAEWIPGWLGMTPGLVGNLLAIVVTLALMVVVAWVIERFALRHLVNQEPI ALLMATLGIAYLLDGLGPMVFGSAVYSINVGMPKDPVFVMDGLIEGGVMISLEDLYAA CIAALLVVCLSLFFQKTKTGRALRAVADDHQAAQSIGIPLSRIWVIVWSVAGGVALVV GIIWGSKLGVQYSLSLVALKALPVVILGGLTSLPGAIIGGLIIGVGEKLSEVYIGPMV GGGIETWFAYGLALCFLLVRPQGLFGDKIIDRV" misc_feature complement(575053..575925) /locus_tag="Alide_0544" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature complement(575329..575385) /locus_tag="Alide_0544" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene complement(575976..576761) /locus_tag="Alide_0545" /db_xref="GeneID:10102574" CDS complement(575976..576761) /locus_tag="Alide_0545" /inference="protein motif:PFAM:PF00005" /note="KEGG: dac:Daci_1158 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125204.1" /db_xref="GI:319761267" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10102574" /translation="MTSKKIGDVILDVKNISLRFGGVKALTDISFDVREHEIRSIIGP NGAGKSSMLNCINGVYTPQEGSITFRGKTFSHMNSRQVAEMGVARTFQNLALFKGMSV IDNIMTGRNLKIKSNLLMQALRIGPAEREEIRHREFVEHIIDFLEIQAWRKTPVGQLP YGLQKRVDLGRALAMEPQVLLLDEPMAGMNVEEKQDMCRFILDVNDEFGTTIVLIEHD MGVVMDISDRVVVLDYGKKIGDGAPDEVRDNEDVIRAYLGTAH" misc_feature complement(575985..576740) /locus_tag="Alide_0545" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature complement(576006..576731) /locus_tag="Alide_0545" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature complement(576612..576635) /locus_tag="Alide_0545" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature complement(order(576111..576113,576210..576215, 576486..576488,576609..576617,576621..576626)) /locus_tag="Alide_0545" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature complement(576486..576497) /locus_tag="Alide_0545" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature complement(576258..576287) /locus_tag="Alide_0545" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature complement(576210..576227) /locus_tag="Alide_0545" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature complement(576192..576203) /locus_tag="Alide_0545" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature complement(576105..576125) /locus_tag="Alide_0545" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene complement(576780..578711) /locus_tag="Alide_0546" /db_xref="GeneID:10102575" CDS complement(576780..578711) /locus_tag="Alide_0546" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004125205.1" /db_xref="GI:319761268" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10102575" /translation="MTTTFPQLLLQHAAQRPDAPALREKEYGIWQTWSWKAAAAEVRL MACGLLSLGFAKGQNLALISDNRPHVYMGFIAVQSIGGVPIPLYQDAVANEMRFVMED AEIHFAFAENQEQVDKLLEVRESVPGIAHIIYDDPRGLRNYDQPGLISTAELVARGRQ WDQAHPGVWESMLGQVSPQDVSVILYTSGTTGKPKGVCQTHASFIGAASGAAEVDKLG PQDSIISYLPPAWVGDHLFSLAQWLVAGYTINCPESASTVSIDMREIGPTYYFAPPRV FEGMLTSISIRMEDAASFKRRMYEKAMELARRVGSDILDGKPVGALDRLKYRLADFAV YGPLRNVMGLSRIRVAYTAGAAIGPELFKFFRSIGINLKQFYGQTETCAYVCLQRDGQ VDLNSVGQAAPGIELKLADNGEVLVKGVAVLKEYYKRPDATAEVIDASGYFHTGDAGV IDANGQLRIIDRAKDVGKLRSGAMFAPNYIENKLKFFSHIKEAVCFGHDRDQVCAFIN IDFEAVGNWAERQNLPYAGYVDLASKAKVLELVADCVAQVNADLARESGMADTQVARF LVLHKELDPDDDELTRTRKVRRNFIAEKYGVLIDALYAGKGEQFIETQVKFEDGRTGT VSATLKIIDAKTYPASAAA" misc_feature complement(576894..578702) /locus_tag="Alide_0546" /note="Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Region: FAA1; COG1022" /db_xref="CDD:31225" misc_feature complement(<578028..>578168) /locus_tag="Alide_0546" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature complement(<577296..>577682) /locus_tag="Alide_0546" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 578932..580623 /locus_tag="Alide_0547" /db_xref="GeneID:10102576" CDS 578932..580623 /locus_tag="Alide_0547" /inference="protein motif:PFAM:PF01471" /note="KEGG: dia:Dtpsy_0462 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="peptidoglycan-binding domain 1 protein" /protein_id="YP_004125206.1" /db_xref="GI:319761269" /db_xref="InterPro:IPR002477" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10102576" /translation="MYAAFLGLAHAPFSIAPDPRYLFMSERHREALAHLLYGLDAGGG FVLLTGEIGTGKTTVCRCFLEQIPAHCNVAYIFNPKLTVPELLRSICDEFGVVHRPAV PGAETVKDCLDPLNEFLLQQHAAGRNNVLIIDEAQNLAPDVLEQLRLLTNLETSERKL LQIILIGQPELRAMLARPELEQLAQRVIARYHLQALGPEETRQYIAHRLAVAGLQGPP PFQRRALARVHALAGGVPRRINLLCDRALLGAYAAGVREVSDAMVRKAAREVFDANAA APRPAGGRARWWAAGAGGLLGAAAVAGLGWSMGWWPQPAAVAGRPAAQAPAPQASAAP VAAEAASGASAPQAAASAPAVPLTLARFLSAQPAADTAPAWQLLAQAWQASLPADVAD PCAVLAPEGLRCWRSRRASLNLLRLLDRPALLTLQPSDAQQGARGAVLLRLDGAMATL QGVDGATLQVPVVELAPLWHGETATLWKAPANLPAGDDVAATAAGAAWLDRQLALAGA APAGSRGVSPEVRRARVHQFQLGQGLTPDGQAGPLTLMLLNRAAGVQEPRLRGGA" misc_feature 578932..579741 /locus_tag="Alide_0547" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 578932..579729 /locus_tag="Alide_0547" /note="Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]; Region: ExeA; COG3267" /db_xref="CDD:33078" gene 580628..581332 /locus_tag="Alide_0548" /db_xref="GeneID:10102577" CDS 580628..581332 /locus_tag="Alide_0548" /inference="similar to AA sequence:KEGG:Ajs_0472" /note="KEGG: ajs:Ajs_0472 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125207.1" /db_xref="GI:319761270" /db_xref="GeneID:10102577" /translation="MSYILDALRRAQAERGRGSVPGLHTPTTPAAGLPAADASPARSM LRALLALALGVGLAGGAWWLWRTPSAPASVAAPSTPVAAVAPPAPPAAVQAAPASAPA AAPASAARPAQAAPPPRPAQPAARAERRAAEAGPAPAAKAPPPRSAPPKPAEAPAAPV FAQADLPPAVREQLPTLQLAGLTYSSNPLYRMVIVNRQVLHEGDQAAPGLVLERIEPG RTVWSFRGYRYALPVQ" gene 581462..582253 /locus_tag="Alide_0549" /db_xref="GeneID:10102578" CDS 581462..582253 /locus_tag="Alide_0549" /inference="protein motif:PFAM:PF00027" /note="KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_004125208.1" /db_xref="GI:319761271" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="GeneID:10102578" /translation="MLACMNQDASLHQRRRPPTAHELGGIPWLGLLQPAERERAVAAL VVGDARPGDYVCRTGRSPTYWFGVVEGLLKVAIESAQGEAVTFTGMPPGGWFGEGTAI KREPYRFNVQALRASLVAGLPIDDFHWLLDHSIGFNRFIMDQLNERLGQFIAAREIDR LGSPDARVARGLAALFNPVLYPGVGQVLRITQQELAYLVGLSRQRVNEALAFLEAQGA IRVEYGGLRVLDLQALRSSPFARTEGDEGARTRRRAAAGAAHPAL" misc_feature 581609..581887 /locus_tag="Alide_0549" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature order(581750..581755,581780..581788) /locus_tag="Alide_0549" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature order(581846..581854,581864..581872) /locus_tag="Alide_0549" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature 582008..582148 /locus_tag="Alide_0549" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 582292..583212 /locus_tag="Alide_0550" /db_xref="GeneID:10102579" CDS 582292..583212 /locus_tag="Alide_0550" /inference="protein motif:PFAM:PF01479" /note="KEGG: ajs:Ajs_0474 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein" /codon_start=1 /transl_table=11 /product="RNA-binding s4 domain protein" /protein_id="YP_004125209.1" /db_xref="GI:319761272" /db_xref="GO:0003723" /db_xref="GO:0009982" /db_xref="InterPro:IPR000748" /db_xref="InterPro:IPR002942" /db_xref="InterPro:IPR006145" /db_xref="GeneID:10102579" /translation="MPDTPSRIHPPATQAPSAAPRTRLVLRRPDPAAKAPSTARPAQA RAPAARPPAAADGRMRLNKRMADLGLCSRREADDWIAQGWVRVNGQVAVMGLQVGPQD RIEVDRAAQGRQSQQVTILLHKPMGYVSGQAEDGHTPAVALVNARSHWQGDASRMRFA PAQLKGLAPCGRLDIDSVGLLVLTQDGRVARQLIGEDSAVDKEYLVRVQYGERTQDVR AVFPADRLALLCHGLLLDGQPLKPAQVDWQNPEQLRFVLREGKKRQIRRMCELVGLKV VGLKRIRIGRVLLGNLPVGQWRYLAPGERF" misc_feature 582463..583209 /locus_tag="Alide_0550" /note="16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187" /db_xref="CDD:31380" misc_feature 582466..>582612 /locus_tag="Alide_0550" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature order(582469..582471,582505..582507,582511..582516, 582520..582525,582532..582537,582541..582543, 582562..582573,582574..582582,582586..582588) /locus_tag="Alide_0550" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature 582631..583209 /locus_tag="Alide_0550" /note="PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of...; Region: PseudoU_synth; cl00130" /db_xref="CDD:193668" misc_feature order(582802..582813,583087..583089) /locus_tag="Alide_0550" /note="active site" /db_xref="CDD:73252" gene 583310..585271 /locus_tag="Alide_0551" /db_xref="GeneID:10102580" CDS 583310..585271 /locus_tag="Alide_0551" /inference="protein motif:PFAM:PF00183" /note="KEGG: dia:Dtpsy_0466 heat shock protein 90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein" /codon_start=1 /transl_table=11 /product="heat shock protein hsp90-like protein" /protein_id="YP_004125210.1" /db_xref="GI:319761273" /db_xref="GO:0005524" /db_xref="InterPro:IPR001404" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR019805" /db_xref="InterPro:IPR020575" /db_xref="InterPro:IPR020576" /db_xref="GeneID:10102580" /translation="MSKHTHSFQAEVAQLLHLVTHSLYSNKEIFLRELISNASDACDK LRFEALNDAALYEDAPNLEVRVAFDTEARTITITDNGIGMSEQEAVDHLGTIAKSGTK EFMSRLTGDQKATASEQGQLIGQFGVGFYSGFIVADRITVESRRAGLPAGQGVRWTSG GAGDFEVEQIERPARGTSVILHLRDDAGDYLNAWKLKQIIGKYSDHISLPILMEKEEW KEGEKEGEPGQMVKTGEWETVNKASALWTRPKKEITAEQYQDFYKTISHDFENPLTWS HNRVEGNTEYTQLLYIPAKAPFDLWNRDKKAGVKLYVKRVFIMDDAEALMPSYLRFVK GVIDSNDLPLNVSRELLQESRDVRLIRDGSVKRVLAMLEDLAKHDRHEASTDAEGVTD VVSEEDKAKEGKYTQFYTEFGAVLKEGLGEDFANRERIAKLLRFASTSTDSASVSFAD YKARMKEGQEAIYYITADTLAAAKNSPQLEVFKKKGIEVLLMTDRVDEWALNFLHDFD GTPLQSVAKGAVDLGKLQDEAEKKAAEEAAEQFKPVLARLKEALKDKAEDVRVTTRLV DSPACLVVQDGGMSMQLARLLKQAGQSAPDAKPVLEVNPEHPLVKKLDGSVHFHDLAN ILFDQALLAEGGLPEDPAAYVKRVNALLV" misc_feature 583310..585268 /locus_tag="Alide_0551" /note="heat shock protein 90; Provisional; Region: PRK05218" /db_xref="CDD:179965" misc_feature 583385..583753 /locus_tag="Alide_0551" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene 585304..585789 /locus_tag="Alide_0552" /db_xref="GeneID:10102581" CDS 585304..585789 /locus_tag="Alide_0552" /inference="similar to AA sequence:KEGG:Daci_1191" /note="KEGG: dac:Daci_1191 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125211.1" /db_xref="GI:319761274" /db_xref="GeneID:10102581" /translation="MKTAPNALARDGRQGRAAGALPWAALALAAMLQGCGSVGAGVGV GIPVGPVSVGVGVGSGGISAGVGAGAGPLGVGVGVNQRGQVLGGAGVGVSTGVGGARV GAGVGTSTVLHDPGQPAATPAEAPSAPAQPAAPAPGGGEIQWRDSSGRIVPACRVEGR C" gene 585882..586862 /locus_tag="Alide_0553" /db_xref="GeneID:10102582" CDS 585882..586862 /locus_tag="Alide_0553" /inference="similar to AA sequence:KEGG:Dtpsy_0467" /note="KEGG: dia:Dtpsy_0467 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125212.1" /db_xref="GI:319761275" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102582" /translation="MRIKTVLATVALALGFTGAAQAQTSNYPNRPITLVVPAGAGGGT DVVARVLADQLGKRLGQAVVVDNKTGASGMLGTQAVARAAPDGYTLLVAYSTPVFYAH HIFAKVPYDIRKDFEFITQLASTSLVMMVNANVPVKNMKDFMAWAQANKGKINYGSYG QGSAGHLMSAYLSDSRKLDMTHVAYKSEAPHIQDLAGGVVSWGLGTIAAAQGVLKDNR VRPIAIFGPKRLAELPDVATMAEQGFADPEFNTVAWFTLLAPAGTPKPIVQRLEKEAV EIIHSTAMKARFQVFGLESVPGGAAQFHKDFDAVDPVIQKLVKISGAKAD" misc_feature 585882..586826 /locus_tag="Alide_0553" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" sig_peptide 585882..585950 /locus_tag="Alide_0553" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 23" misc_feature 586020..586850 /locus_tag="Alide_0553" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(586863..587906) /locus_tag="Alide_0554" /db_xref="GeneID:10102583" CDS complement(586863..587906) /locus_tag="Alide_0554" /inference="protein motif:PFAM:PF01636" /note="PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0479 serine/threonine protein kinase" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_004125213.1" /db_xref="GI:319761276" /db_xref="InterPro:IPR002575" /db_xref="GeneID:10102583" /translation="MTTLAAHDTPLHPYATLTPDLVLDALASVGLHGDGRLMALGSYE NRVYQVTLEDGSRVVAKFYRPGRWSEAQILEEHAFALELAGAEVPVIAPLLLQGRSLH RHAGFDFAVSPWRGGRMPELDDFEVLEWLGRYLARIHNVGAARPFVHRPRLDLPGFGQ EPRDWLLGAQAIPMDQQSAWRDACDEALELIAAGARPSSTGGLFGLKDATTIRLHGDC HPGNVLWTPVDDAGHGGPHFVDLDDARMGPAVQDLWMLLSGDRRQRTMQLATLLDGYE QLRPFDRRELALIEPLRTLRLIHYSAWLARRWSDPIFPLNFPWFGSSDYWRGQVDMLR EQIEAMREEPLAA" misc_feature complement(587049..587780) /locus_tag="Alide_0554" /note="Phosphotransferase enzyme family; Region: APH; pfam01636" /db_xref="CDD:190058" misc_feature complement(586965..587777) /locus_tag="Alide_0554" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" misc_feature complement(order(587187..587192,587235..587237, 587241..587246,587256..587258,587562..587573, 587634..587636,587727..587729,587733..587735, 587766..587768)) /locus_tag="Alide_0554" /note="active site" /db_xref="CDD:88612" misc_feature complement(order(587187..587192,587235..587237, 587241..587246,587256..587258,587562..587573, 587634..587636,587727..587729,587733..587735, 587766..587768)) /locus_tag="Alide_0554" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88612" gene complement(587929..589377) /locus_tag="Alide_0555" /db_xref="GeneID:10102584" CDS complement(587929..589377) /locus_tag="Alide_0555" /inference="protein motif:PFAM:PF00069" /note="KEGG: dia:Dtpsy_0471 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; UspA domain-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain" /codon_start=1 /transl_table=11 /product="serine/threonine-protein kinase-like domain protein" /protein_id="YP_004125214.1" /db_xref="GI:319761277" /db_xref="GO:0004672" /db_xref="GO:0005524" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR006016" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR017442" /db_xref="InterPro:IPR020635" /db_xref="GeneID:10102584" /translation="MKLLTPGTEIDGFVVHECIHAGGMAHIYRVGYANAARNPGFPLA MKIPRMTAGDGAENIVSFEVELTILPTLSGHHVPRFVAAGDLMRLPYLVMEYVEGRTL QHWLEEHPRTLTPEGALQDTADIARIGSAMALAAHSIHQQNVCHLDLKPANVLLREGG SVVLLDFGLSCHAHYPDLLAEEMRKAVGSPTWIAPEQVVGVRGDLRSDIFAIGVMLYE MATGELPFGAPATQGGMRQRLWMTPAPPRQHRPDLPEWLQEVILRCLEPEAAQRYPSA AHLAFDLANPEQVPITERGRRLRGPGLAVHFKRWIKAAGMHYQPSPLPARQIEQVPIV MVAVPHDDVTDATLYSLREAAARSLGIRPGARLACVTVISPSASSTSDSARSETMLHR THLARLKQWAAGLDLSRHSASYHVLEAGDVAQALVRYAEGNRVGMMILGAATHGLQLQ RFIDTVPIRVARDAPCTVILVKQQLPFDALGQ" misc_feature complement(588547..589314) /locus_tag="Alide_0555" /note="Catalytic domain of Protein Kinases; Region: PKc; cd00180" /db_xref="CDD:173623" misc_feature complement(order(588805..588816,588871..588873, 588880..588882,588913..588915,588919..588924, 588928..588930,588934..588936,589069..589071, 589075..589077,589087..589098,589144..589146, 589240..589242,589246..589248,589297..589299, 589309..589314)) /locus_tag="Alide_0555" /note="active site" /db_xref="CDD:173623" misc_feature complement(order(588880..588882,588913..588915, 588919..588924,588928..588930,588934..588936, 589075..589077,589087..589098,589144..589146, 589240..589242,589246..589248,589297..589299, 589309..589314)) /locus_tag="Alide_0555" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature complement(order(588805..588816,588871..588873, 588922..588924,588928..588930,588934..588936, 589069..589071,589075..589077,589309..589311)) /locus_tag="Alide_0555" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature complement(588541..589269) /locus_tag="Alide_0555" /note="Serine/Threonine protein kinases, catalytic domain; Region: S_TKc; smart00220" /db_xref="CDD:128516" misc_feature complement(order(588805..588816,588865..588885)) /locus_tag="Alide_0555" /note="activation loop (A-loop); other site" /db_xref="CDD:173623" misc_feature complement(587965..588378) /locus_tag="Alide_0555" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(588007..588018,588046..588051, 588055..588060,588262..588264,588352..588354, 588364..588369)) /locus_tag="Alide_0555" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(589381..590139) /locus_tag="Alide_0556" /db_xref="GeneID:10102585" CDS complement(589381..590139) /locus_tag="Alide_0556" /inference="protein motif:PFAM:PF00149" /note="PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_0472 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004125215.1" /db_xref="GI:319761278" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="InterPro:IPR011152" /db_xref="GeneID:10102585" /translation="MKIALLSDIHANLQALEACLEHARAHGARQFALLGDLVGYGADP GPVLDRVMQLVAEGTPCVRGNHDAAAVAPPAAAENLGEQSAQWTHPRLNARQLAFLAG LPLATRMGMDALLVHASADGPERWHYVADGNAAERSMAAATQMDPAIRYVFSGHVHEQ ALYFLTPTAKLMRFSPQPGVPVPVPPHRQWLAIVGSCGQPRDGDTRAMYALFDPDAAT ITFQRVPYDHMAAAAAVRAGGLPAFFADRLEKGR" misc_feature complement(589660..590139) /locus_tag="Alide_0556" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature complement(<589786..590121) /locus_tag="Alide_0556" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" misc_feature complement(order(589789..589791,589942..589947, 590032..590034,590110..590112,590116..590118)) /locus_tag="Alide_0556" /note="active site" /db_xref="CDD:163614" misc_feature complement(order(589789..589791,589945..589947, 590032..590034,590110..590112,590116..590118)) /locus_tag="Alide_0556" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163614" gene 590369..591565 /locus_tag="Alide_0557" /db_xref="GeneID:10102586" CDS 590369..591565 /locus_tag="Alide_0557" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0058 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004125216.1" /db_xref="GI:319761279" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102586" /translation="MRPLQGVRVLDLSSVIFGPLASQVLADYGAEVVKIEPPKGDSTR HTGPAAEPGMAAMFLGSNRSKKSVALDLKQPAAQKALQALIGTADVFMHSMRPQKLAG LGLAPEALRARHPRLVYASLLGFLPGPYAGRPAYDDVIQGMSGLADLMDQQSGEARYL PTIAADKTCGHVAAHAILAALWQRERTGQGAFVEVPMFESMVGFNLVEHFYGQHFEPP RSAPGYPRVLAPWRRPYRTADGLVAMMPYTDVHWQRFFAEVGAPQHAGDPRFADIAAR TAHIAELLELASGYVVRQTTAHWLAACERLEIPAAPVARLDELRSDEHLAATGFFEEV QDPAMGTVRFPGVGVRFDGRRPPVAMPPRLGEHTRALLAEAGLDAPQIQALLDQGAAI APQPKN" misc_feature 590369..591541 /locus_tag="Alide_0557" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 591581..592060 /locus_tag="Alide_0558" /db_xref="GeneID:10102587" CDS 591581..592060 /locus_tag="Alide_0558" /inference="similar to AA sequence:KEGG:CtCNB1_2196" /note="KEGG: ctt:CtCNB1_2196 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125217.1" /db_xref="GI:319761280" /db_xref="GeneID:10102587" /translation="MHAPTTMDRTAPRLGQGFVWQDLQVGQRFRTFRRTVTETDLVQF IGVTGMLEAIFIEEGYEGAAMPGRAVPGALTYALIEGFILQTMIQGTGLAMLELHQKI LAPVVVGDTIEAMVEVTDIRPTSRSGRAVVTSRIDVFNQNAVLVMTYTATRLLAGRG" misc_feature 591698..592042 /locus_tag="Alide_0558" /note="(R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel...; Region: R_hydratase_like; cd03441" /db_xref="CDD:48036" misc_feature order(591713..591715,591728..591730,591734..591736, 591743..591745,591785..591787,591794..591799) /locus_tag="Alide_0558" /note="active site" /db_xref="CDD:48036" misc_feature order(591728..591730,591734..591736,591743..591745, 591794..591796) /locus_tag="Alide_0558" /note="catalytic site [active]" /db_xref="CDD:48036" gene 592113..593111 /locus_tag="Alide_0559" /db_xref="GeneID:10102588" CDS 592113..593111 /locus_tag="Alide_0559" /inference="similar to AA sequence:KEGG:CtCNB1_2197" /note="KEGG: ctt:CtCNB1_2197 TctC" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004125218.1" /db_xref="GI:319761281" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102588" /translation="MDSTRTRAPRRRACLALAACAALTVLASPGAHAQAYPAKPITMV VPFPPGGPTDMVARLLAQKLSEQMGQPVVVDNKPGANGNIGGVYVSKAPADGYTVLYN TSSITLSPALYKSMQYDVLRDLAPVALTAVVPLALVVNPEVPANNVKDFVAYAKAHPG KLSYGSAGNGNVTHLAAYQFVKAQGIEATHVPYRGSAPADVDLAAGQIQFMTDTINSV MSFVKDKRMKLLAVTTAKRMSLFPDVPTLAETIMPGFEAGAWQGVMVPAGTPEPVVQR LNAEINKALQNPGLREKLAVQGAEPLGSSVQEYGAYLRKELARWASVVKATGITLD" sig_peptide 592113..592214 /locus_tag="Alide_0559" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 34" misc_feature 592194..593099 /locus_tag="Alide_0559" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 592278..593099 /locus_tag="Alide_0559" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(593158..594006) /locus_tag="Alide_0560" /db_xref="GeneID:10102589" CDS complement(593158..594006) /locus_tag="Alide_0560" /inference="protein motif:PFAM:PF02737" /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_0476 3-hydroxybutyryl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase nad-binding protein" /protein_id="YP_004125219.1" /db_xref="GI:319761282" /db_xref="GO:0016491" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="InterPro:IPR006180" /db_xref="GeneID:10102589" /translation="MTITTVGIIGAGTMGNGIAQACAVSGINVVMVDVSDAAVQKGVA TVAGSLDRLIKKEKITAADKDAALSRIKGSTSYDDLKAAQIVIEAATENYELKLKILK QVDALVAPEVILASNTSSISITKLAAATGRADRFIGMHFFNPVPMMALVEIIRGLQTS DATHGAVKQLAERLGKSPITVKNAPGFVVNRILVPMINEAFFVLAEGLATPEDIDAGM KLGCNQPIGPLALADMVGLDVCLAVMDVYLAEFGDSKYRACPLLREMVAAGRLGRKTG RGVYQY" sig_peptide complement(593941..594006) /locus_tag="Alide_0560" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.742) with cleavage site probability 0.710 at residue 22" misc_feature complement(593161..593961) /locus_tag="Alide_0560" /note="3-hydroxybutyryl-CoA dehydrogenase; Validated; Region: PRK05808" /db_xref="CDD:180269" misc_feature complement(593455..593958) /locus_tag="Alide_0560" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(593161..593451) /locus_tag="Alide_0560" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" gene 594106..595698 /locus_tag="Alide_0561" /db_xref="GeneID:10102590" CDS 594106..595698 /locus_tag="Alide_0561" /inference="protein motif:PFAM:PF00732" /note="PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dia:Dtpsy_0477 choline dehydrogenase" /codon_start=1 /transl_table=11 /product="glucose-methanol-choline oxidoreductase" /protein_id="YP_004125220.1" /db_xref="GI:319761283" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR007867" /db_xref="InterPro:IPR012132" /db_xref="GeneID:10102590" /translation="MRDFDYVVIGGGSAGCVLAGRLSEDPAVRVGLLEAGGSDDSVLI HCPAGLAVMARTGRYNWGLQTTAQPGLGGRRGYQPRGKVLGGSSSVNAMVYVRGHPDD YEHWAAAGNPGWGWRDVLPYFLRAEHNERWDNAWHGRGGPLNVMDLRSPNRFSAVFVD AAVQAGHARNDDFNGPVQEGVGLYQVTHRNGERCSAAKAYLTPHLSRPNLQVITGAHA TRILFEGRRAVGVEYRQGGRLQQVRARREVLLSAGALLSPQLLMLSGVGPADELQRHG IGVLHHLPGVGQNLHDHPDVVQVVDAPRLTDLFGLSPRGALNLLRGIRQWRAQRSGML TTNFAEAGGFLKSSPDEARPDLQLHFVIGKLVDHGRKTVLGHGYSLHVCLLQPQSRGS VRLASGDPLQAPLIDPGFLAHDGDMARMVRGFQMGRHILRQPALAQYGGSEGPALAQA QTEEQIAQFIRRHADTIYHPVGSCRMGPGPLDVVDGELRVHGLQGLRVVDASIMPRIV SGNTNAPTVMIAERAADLIKKF" misc_feature 594106..595689 /locus_tag="Alide_0561" /note="choline dehydrogenase; Validated; Region: PRK02106" /db_xref="CDD:179368" misc_feature 595264..595674 /locus_tag="Alide_0561" /note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199" /db_xref="CDD:191229" gene 595815..596090 /locus_tag="Alide_0562" /pseudo /db_xref="GeneID:10102591" gene complement(596078..596383) /locus_tag="Alide_0563" /pseudo /db_xref="GeneID:10102592" gene complement(596410..597228) /locus_tag="Alide_0564" /db_xref="GeneID:10102593" CDS complement(596410..597228) /locus_tag="Alide_0564" /inference="protein motif:TFAM:TIGR01291" /note="KEGG: ajs:Ajs_3712 ABC transporter; TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="abc-2 type transporter, nodj family" /protein_id="YP_004125221.1" /db_xref="GI:319761284" /db_xref="GO:0005215" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR005981" /db_xref="InterPro:IPR013525" /db_xref="InterPro:IPR013526" /db_xref="GeneID:10102593" /translation="MAPMTDPSIWRAPDLSLRWWPVFLRNLLVWRKLAIPSLVGNIAE PLMWLVAFGYGMGALVGEVQVGGDGGARVPYILFLASGSICMSAMNAASFEALYSAFS RMHVQKTWDGIMNAPISLDSVLLAEMLWAAFKALFTATAILGVMLALGISHAPKLLVA WPVLLAVGIMFSSIALIFNALAQGYDFFTYYFTLVLTPMMFLSGVFFPREQLPTAVRI ASDWLPLTNAVELVRPLFMDQWPAHPLRHGLVVAVTTIAAYWVALALTRRRFRA" misc_feature complement(596419..597192) /locus_tag="Alide_0564" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene complement(597230..598171) /locus_tag="Alide_0565" /db_xref="GeneID:10102594" CDS complement(597230..598171) /locus_tag="Alide_0565" /inference="protein motif:PFAM:PF00005" /note="KEGG: ajs:Ajs_3711 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125222.1" /db_xref="GI:319761285" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR015851" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102594" /translation="MNVLFEAQDLRKRYGDATVVDGVSFAIAPGECLGVIGPNGAGKT TTIRMCLGLTAPDAGSVRFYPGGGAAPLSMPLDALAIKAQLGVVAQFDSLDPDFSCAE NLRVFGRYFGLKGAAMDARIGPLLEFAALTSKAGARPGELSGGMRRRLSLARALVNDP RLLLLDEPTTGLDPQARHLMWERLQRLLQQGKSILLTTHFMDEAERLCSRLLVLDHGR KIAEGRPRELIAEHLESDVVEAYGNGALTLAHDAQLRPLARRIEVSGETVFFYTQDAR PLLQALTGHGHLRTLHRPANLEDLFLKLTGRQIREDA" misc_feature complement(597239..598156) /locus_tag="Alide_0565" /note="nodulation ABC transporter NodI; Provisional; Region: PRK13537" /db_xref="CDD:184124" misc_feature complement(597488..598156) /locus_tag="Alide_0565" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(598040..598063) /locus_tag="Alide_0565" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(597575..597577,597671..597676, 597902..597904,598037..598045,598049..598054)) /locus_tag="Alide_0565" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(597902..597913) /locus_tag="Alide_0565" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(597719..597748) /locus_tag="Alide_0565" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(597671..597688) /locus_tag="Alide_0565" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(597653..597664) /locus_tag="Alide_0565" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(597569..597589) /locus_tag="Alide_0565" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(598276..599988) /locus_tag="Alide_0566" /db_xref="GeneID:10102595" CDS complement(598276..599988) /locus_tag="Alide_0566" /inference="protein motif:PFAM:PF07519" /note="PFAM: Tannase and feruloyl esterase; KEGG: reu:Reut_A1509 tannase and feruloyl esterase" /codon_start=1 /transl_table=11 /product="tannase and feruloyl esterase" /protein_id="YP_004125223.1" /db_xref="GI:319761286" /db_xref="InterPro:IPR011118" /db_xref="GeneID:10102595" /translation="MTTPPAIRPPWPRGARLLLTASAALALAACGGGSHHFSFDTASR NLATQQVAADQIGLPTKGAVVTSVETPTAASGPQPPASIRANIAIAPVDTAAPAIKMG LLLPKEWNGKVVMLGGGGYNGTIPSLYTYSAAPASQGPYPLLDQGYAVFASDSGHQAG AAGSRDGSFGTNDEAAANFSGAALKKVSDVADVLVTRFYGRKPGKRYFIGGSTGGREA LAVAQKWPADWDGVVSWYPAWNAASLDLQFGRLSRAFAQPDAYPSLAQRKLLRQAAMA RCDALDGIADGIVSNVAACNAQFDPATAQFEGKPLRCPSGGNENDGCLSDAMIAALHA YNTPITFGSPLGSGETQYPGFNVWGSELGETGPSPLQPTVTLLAMNTTAPASPAPLTA PYWAVFWDQWVRYFVTRDANFDSLSLDPQNPGPWAGRIQELTKLQDINSTDLSAFQKR GGKLLMAHGTADVLVSTRATAQYYERLVQTMGADTVKSFARYYEVPGYGHAASTAFNA NWDSLKALDQWVSIGTAPAGQVVTDTAGVPGRTRPLCEYPGWPRYGGTGDANKAESFS CVAP" misc_feature complement(598285..599724) /locus_tag="Alide_0566" /note="Tannase and feruloyl esterase; Region: Tannase; pfam07519" /db_xref="CDD:116138" gene complement(600130..601614) /locus_tag="Alide_0567" /db_xref="GeneID:10102596" CDS complement(600130..601614) /locus_tag="Alide_0567" /EC_number="3.2.2.4" /inference="protein motif:TFAM:TIGR01717" /note="TIGRFAM: AMP nucleosidase; KEGG: aav:Aave_4246 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase-like; purine or other phosphorylase family 1" /codon_start=1 /transl_table=11 /product="amp nucleosidase" /protein_id="YP_004125224.1" /db_xref="GI:319761287" /db_xref="InterPro:IPR000845" /db_xref="InterPro:IPR011271" /db_xref="InterPro:IPR018953" /db_xref="GeneID:10102596" /translation="MASSLAFITEPSFHAEPADALAQVQHIYQQQIGHLRDAMQRFVA GETPANHVRACYPYVRVQIATVARAATQLAYGFVEGPGCYETTLTRPDLFAGYYTEQF RLLRASHGVELEVGLSRQPIPIHFSFAEHDYIEGTLSPERRTLMRDVFDLPDLAAMDD GIANGTWTPSAGEAQPLSLFTGPRVDYSLHRLRHYTGTLPEWFQNFVLFTNYQFYIDE FVRLGHAEMARADSEYVAFIEPGNVVTRRTGLPAQPGDELGAPPPRLPQMPAYHLVRA DNSGITMVNIGVGPANAKTITDHIAVLRPHAWMMLGHCAGLRNSQQLGDYVLAHAYVR EDHVLDEELPLWVPIPALAEIQVALQQAVAEVTQMGGPDLKRIMRTGTVASTDNRNWE LLPDNMPQRRFSQSRAVALDMESATIAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMA NHFYRERVQQHLLIGMRAIDILRAGGVQRLHSRKLRSFAEVAFQ" misc_feature complement(600133..601590) /locus_tag="Alide_0567" /note="AMP nucleosidase; Provisional; Region: PRK08292" /db_xref="CDD:181358" misc_feature complement(601087..601563) /locus_tag="Alide_0567" /note="Bacterial AMP nucleoside phosphorylase N-terminus; Region: AMNp_N; pfam10423" /db_xref="CDD:151003" misc_feature complement(600199..600987) /locus_tag="Alide_0567" /note="Phosphorylase superfamily; Region: PNP_UDP_1; cl00303" /db_xref="CDD:193757" gene complement(601650..603746) /locus_tag="Alide_0568" /db_xref="GeneID:10102597" CDS complement(601650..603746) /locus_tag="Alide_0568" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold-3 domain protein; KEGG: dia:Dtpsy_0486 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004125225.1" /db_xref="GI:319761288" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013655" /db_xref="InterPro:IPR013656" /db_xref="GeneID:10102597" /translation="MPAKPPSDPVPSGSDSHASAALLRLVADTVPVMLAYYESPELRC RFANQRFADFMERTADGILGTTARDILGEQTWQQILPCVQRALGGETVQHLCQQAGPD GRMRMLEFSLRPQLEPRGGRLATPGILVLVNDVTERLEAEQAVRQSEERMRKFAEATE EGLAFHRDGRILDANASLQRMTGYTLAELVGRSIFDFIQPEYRALAQEYTRRGREYPY ELAMRHKDGHAIPIEAVGKTLPQQQDEYRVVVVRDITARKQAQERARFLALHDPLTQL PNRRHLMLQLARTVATAQERRKRSAVLFVDLDHFKTVNESLGHEAGDQLLCEVARRLQ EGVKATDFVAHVGGDQFVVLLSGLRGRAAAAAAADALIERIRAVYTIGETQLSPSPSV GISVFPDDGYGPDELLRRADAAMQQAKESGRGTRLFYTPDMEGQPAEVLQQEHLLREA VFHDALELHYQPQVQVASGRLVGLEALVRWRHPQRGLVGPDDFIPLAESRGLITPIGR WVLREACRQLKAWHNEGLALVPVAVNLSAIEFRQRDVAGEIARVLQETGLEPQYLEVE ITETTLMQHAEHTRATLQALQAMGVAVTVDDFGTGYSSLTYLKRYPLDKLKVDRSFVA DTPADGDDVAIVTAIVQLARSLQLQSVAEGVQTPEQLTLLQSLGCELAQGFGIAPPMD VRRTRAWLHALPAAAL" misc_feature complement(603333..603665) /locus_tag="Alide_0568" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(602958..603305) /locus_tag="Alide_0568" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(602985..603248) /locus_tag="Alide_0568" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(603066..603068,603081..603083, 603147..603158,603195..603197,603213..603215, 603225..603227)) /locus_tag="Alide_0568" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(603039..603041,603045..603047, 603117..603122,603129..603131,603153..603155, 603165..603167)) /locus_tag="Alide_0568" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(602475..602942) /locus_tag="Alide_0568" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(602700..602702,602829..602831)) /locus_tag="Alide_0568" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(602697..602708,602712..602714, 602778..602780,602790..602792,602802..602807, 602814..602816)) /locus_tag="Alide_0568" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(602637..602639,602724..602726)) /locus_tag="Alide_0568" /note="I-site; other site" /db_xref="CDD:143635" misc_feature complement(601698..602414) /locus_tag="Alide_0568" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene 603849..604802 /locus_tag="Alide_0569" /db_xref="GeneID:10102598" CDS 603849..604802 /locus_tag="Alide_0569" /inference="protein motif:TFAM:TIGR01297" /note="manually curated; TIGRFAM: cation diffusion facilitator family transporter; KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter; PFAM: cation efflux protein" /codon_start=1 /transl_table=11 /product="cation diffusion facilitator family transporter" /protein_id="YP_004125226.1" /db_xref="GI:319761289" /db_xref="GO:0008324" /db_xref="InterPro:IPR002524" /db_xref="GeneID:10102598" /translation="MPHAAARSLHVPAWMTPHNLLRASMGVAVLTIALKTLAWWISGS VGLLSDALESFVNLAGAMFALAMVTVARRPADADHPYGHHKAEYFSSGFEGILIVGAS IAILWAAVLRLMHPQPLEQLGWGMGLSLLSTACNGLLAWGMLRAAQVHRSLALEGDAR HLMTDVWTSIGVVVGLLTASATGWTWMDPLVAIGVALNILREGGALIWRASQGLMDEA MEPTLLARVYTVLQEYGGASGGAVHFDSLTSRRAGARSFVDLHMHVPGRWTLAEAARE RSEVEQALMQAVPGLRATIELLPEDHDTVFEQKVQAGEEQP" misc_feature 603903..604751 /locus_tag="Alide_0569" /note="Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053" /db_xref="CDD:30402" misc_feature 603936..604748 /locus_tag="Alide_0569" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" gene 604799..605242 /locus_tag="Alide_0570" /db_xref="GeneID:10102599" CDS 604799..605242 /locus_tag="Alide_0570" /inference="protein motif:TFAM:TIGR00256" /note="KEGG: dia:Dtpsy_0488 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase" /codon_start=1 /transl_table=11 /product="d-tyrosyl-tRNA(tyr) deacylase" /protein_id="YP_004125227.1" /db_xref="GI:319761290" /db_xref="GO:0008324" /db_xref="InterPro:IPR003732" /db_xref="GeneID:10102599" /translation="MIGLLQRVSEARVEIAGEVAGRIGAGLLALVCAEQGDGEQQADK LLAKILKLRIFTDEAGKMNRSVQDVGGGLLIVSQFTLAADTRGGNRPGFSQAAAPAEG ERLYDYFVARARAAHPEVATGRFGASMQVHLVNDGPVTIPLRIAP" misc_feature 604799..605227 /locus_tag="Alide_0570" /note="D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but...; Region: Dtyr_deacylase; cd00563" /db_xref="CDD:29648" misc_feature order(604817..604819,605027..605041,605075..605077, 605219..605221) /locus_tag="Alide_0570" /note="putative active site [active]" /db_xref="CDD:29648" misc_feature order(604928..604930,604937..604945,604949..604960, 605027..605032,605036..605041,605045..605053, 605057..605071,605075..605077,605177..605227) /locus_tag="Alide_0570" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29648" misc_feature order(604940..604942,604955..604957,605057..605059, 605066..605068) /locus_tag="Alide_0570" /note="putative tRNAtyr binding site [nucleotide binding]; other site" /db_xref="CDD:29648" gene complement(605308..606054) /locus_tag="Alide_0571" /db_xref="GeneID:10102600" CDS complement(605308..606054) /locus_tag="Alide_0571" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: dia:Dtpsy_0490 protein of unknown function DUF81" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125228.1" /db_xref="GI:319761291" /db_xref="InterPro:IPR002781" /db_xref="GeneID:10102600" /translation="MFGTPLLLAAAFVAGALNAVAGGGSFLTLPALVFTGVPPVVANA TGTVALLPGYMAGAWGFREDMQPPPGLSMRAVVALSLAGGSAGAALLLVTPDATFRKV VPWLLLAATALFAFGPQLRQWAGSGRHGAAPWKASLGMLAVAAYGGYFNGGLGILLLA LFGLLGQTQLNAMNGMKNLVSALLTAIAVAIYAAGGIVLWPQALLMMVAATLGGYGGA RAARRLPAPVLRWGIVATGLVMAGLFFWKQ" sig_peptide complement(605989..606054) /locus_tag="Alide_0571" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.947 at residue 22" gene complement(606220..607167) /locus_tag="Alide_0572" /db_xref="GeneID:10102601" CDS complement(606220..607167) /locus_tag="Alide_0572" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_1220 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125229.1" /db_xref="GI:319761292" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102601" /translation="MPDFDPQRLLSRLRFRHLQLLLALHEGGSLRAAAGLMHLTQPAL SKALGEIEAAFGAPLFIRTARGLEPTPQGETAIRGAAMLLNELAHLGQETSQQPAVTQ LRIGAPPFVAQGYLPEVLSRLIAEHPHVRVQLQEERVPLLVECLLAGQLDALITSYPT ELPEAAGQPLRYEKLFDAAFTVIAPADHPAGHAHTCDWEYLARQRWVLPTRSSMLRRM MEEVFRRESVMSPTPVIESTSPFTNLQLVKAGLGISAVPSASLRAAPASLGVREVRAV PGISTGPVALIYRGAVANPRVALLRSTLGLAASGETPAP" misc_feature complement(606946..>607074) /locus_tag="Alide_0572" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(<606409..606861) /locus_tag="Alide_0572" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature complement(order(606421..606426,606430..606435, 606451..606468,606760..606780,606784..606786, 606796..606798,606805..606810,606814..606819)) /locus_tag="Alide_0572" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 607272..608243 /locus_tag="Alide_0573" /db_xref="GeneID:10102602" CDS 607272..608243 /locus_tag="Alide_0573" /inference="similar to AA sequence:KEGG:Daci_1221" /note="KEGG: dac:Daci_1221 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125230.1" /db_xref="GI:319761293" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102602" /translation="MDRRAFLASALAATATSAAWANSFPSRPVRVISPYAAGGGPDVQ LRQTGPSLGEVLGQSIVIENKVGAAGVLAAQYVAQQPADGYTCLLGSNTHLIQKLLQP GLRFDPIGDFAPVSNLMSSPTVLVVRADAPWRTAQELIAALKAQPTQANYGSGGIGTS AHLAGATLASLAGLQVTHIPLKGSVEIAASLIRGDTQYAFPVAGTGIPQVQGGKLRAL AVTSRKRLSQLPDVPTLQEVLNNELAVQESWFGLWAPAKTPPAVLDTLNAAVRKVAAQ PALRAAFEAVGNEATASASPQAFADFVRSENRKWAEIIQLAGITANS" sig_peptide 607272..607337 /locus_tag="Alide_0573" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 at residue 22" misc_feature 607341..608228 /locus_tag="Alide_0573" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 607407..608228 /locus_tag="Alide_0573" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 608263..609513 /locus_tag="Alide_0574" /db_xref="GeneID:10102603" CDS 608263..609513 /locus_tag="Alide_0574" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_1222 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004125231.1" /db_xref="GI:319761294" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10102603" /translation="MDKPLQGVRVVDMSHVIAGPLASHYLAQLGAEVIKIEPPGGEVM RNSHAPGEKNEGGLPSGFVALNAGKRSLAVDIRQPEGADIVRALARTADVFIENFRPG VVARYGLGYEDIRALRPDVVYCSISGFGQQGDWARRGAYDHVVQALTGMMMMAGDDEH APPVKVGFPVIDVAVGMLGALSITAALHKRNAGTPGARAGQHIDASMLQASMMLMYPH ACTYLTHGTEPRRVGNRGYTGSPAADTYRCADGWLSTAANTPAQFRLLAGVLGLEALC DDAALLDIDAFNAPQGGFVVARDLPALQERLRAAFAGRSAADMEARLNAVGVPAARVR RLGEFLDEARDTGALRPVRYGAQGSDVQTPGLGFRLGGCEPAPQTPAPGLGQHGHALL QELGIEDAVIEQLHRNGVLGGAHH" misc_feature 608263..609495 /locus_tag="Alide_0574" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 609546..610532 /locus_tag="Alide_0575" /db_xref="GeneID:10102604" CDS 609546..610532 /locus_tag="Alide_0575" /inference="protein motif:TFAM:TIGR02823" /note="KEGG: dac:Daci_1223 quinone oxidoreductase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein" /codon_start=1 /transl_table=11 /product="quinone oxidoreductase, yhdh/yhfp family" /protein_id="YP_004125232.1" /db_xref="GI:319761295" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="InterPro:IPR014188" /db_xref="GeneID:10102604" /translation="MFKALLLTQPAPRETHAECVEIDESRLPEGTVRVAVSHSTLNYK DALAITGRSPVVRQFPMVPGIDFAGTVIDSEDERFRPGDAVLLNGWGVGETHWGGLAQ QARVNGDWLIRRPEAFSAQDVMAIGTAGYTAMLCVMALQDRGVAPADGPVLVTGANGG VGSIAVALLARLGFEVHASTGRPEQAAHLQALGAAQIVERGSLDAPGKPLQKERWAAA VDSVGSHTLANVCASVRYGGCVAACGLAQGMDLPATVAPFILRGVSLLGIDSVYAPVQ RRERAWQRLAQELPREVLQRNTEVAGLADVVALAPRLLAGQVRGRVVVDTAR" misc_feature 609549..610520 /locus_tag="Alide_0575" /note="Yhdh putative quinone oxidoreductases; Region: MDR_yhdh; cd08288" /db_xref="CDD:176248" misc_feature 609552..610520 /locus_tag="Alide_0575" /note="putative quinone oxidoreductase, YhdH/YhfP family; Region: oxido_YhdH; TIGR02823" /db_xref="CDD:163033" misc_feature order(609669..609674,609927..609932,609939..609941, 610011..610013,610017..610028,610083..610091, 610143..610145,610206..610211,610272..610286, 610347..610358,610482..610484,610491..610493, 610497..610499) /locus_tag="Alide_0575" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176248" misc_feature order(610170..610172,610251..610253,610269..610280, 610296..610298,610302..610313,610317..610325, 610329..610352,610359..610364) /locus_tag="Alide_0575" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176248" gene 610588..612147 /locus_tag="Alide_0576" /db_xref="GeneID:10102605" CDS 610588..612147 /locus_tag="Alide_0576" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1709 acyl-CoA synthetase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004125233.1" /db_xref="GI:319761296" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="InterPro:IPR022272" /db_xref="GeneID:10102605" /translation="MNHLHTGGTMAAQHRSAFRAFAGREALVGGGVRWSYAGLAERCH RMARYFQSLGLGRQDGIAMLAGNTPEAVVVVIAAQLLGLRYTALHPMGALEDQGFVLR DAGIRLLVVDGARFAGRGAELAALGIARTVVSLGPALFGADAVAASAAFDGSETPIEV QPDDVHKISYTGGTTGRSKGVVHRQRTALTMLLQQLGGWEWPAPARCLVATPISHAGG SLVLPTLLRGGTLVLADKFSPASILQTVQDERISVTFLVPTQIYALLDCADRARYDLS SLQLVLYGAAPIAPARLAEALRVFGPIFGQIYGQAEAPMTIAYLRRDEHDPQRPALLQ SCGRPLPGNEVRLLDAQLREVPPGEVGELCVRGPLVMDGYLNRPEETAKALAGDWLHT GDMARMDEQGYLYLVDRAKDMIITGGFNVYSTEVEACLALHPAVAQSAVIGIPNAKWG EAVLAVVVPRPGAACPEPQELMAFVQRHKGPVLAPKAVQFAEALPLTPLGKVDKKTLR AQFWQGQERLV" misc_feature 610588..612144 /locus_tag="Alide_0576" /note="acyl-CoA synthetase; Validated; Region: PRK06188" /db_xref="CDD:180454" misc_feature <611095..612120 /locus_tag="Alide_0576" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(612164..612616) /locus_tag="Alide_0577" /db_xref="GeneID:10102606" CDS complement(612164..612616) /locus_tag="Alide_0577" /inference="protein motif:PFAM:PF02130" /note="PFAM: protein of unknown function UPF0054; KEGG: ajs:Ajs_3702 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125234.1" /db_xref="GI:319761297" /db_xref="GO:0008237" /db_xref="GO:0008270" /db_xref="InterPro:IPR002036" /db_xref="InterPro:IPR020549" /db_xref="GeneID:10102606" /translation="MALNHLTLSLQFARDAATHRAALPRHKVARWIRHALAVDAEITV RIVGSEEGRRLNREFRRKDYATNVLTFDYQQEPTVLADLVLCAPVVEREAREQGKTLQ EHYAHLLVHGALHAQGWDHETGEQDAQEMEAYETEIMRELGFADPYAG" misc_feature complement(612170..>612601) /locus_tag="Alide_0577" /note="Uncharacterized protein family UPF0054; Region: UPF0054; cl00402" /db_xref="CDD:185971" gene complement(612668..613618) /locus_tag="Alide_0578" /db_xref="GeneID:10102607" CDS complement(612668..613618) /locus_tag="Alide_0578" /inference="protein motif:PFAM:PF02562" /note="PFAM: PhoH family protein; KEGG: dia:Dtpsy_0492 PhoH family protein" /codon_start=1 /transl_table=11 /product="phoh family protein" /protein_id="YP_004125235.1" /db_xref="GI:319761298" /db_xref="GO:0005524" /db_xref="InterPro:IPR003714" /db_xref="GeneID:10102607" /translation="MILRHTFTPHNNLRLSHLCGPADVHLRTIEAALQVKIAHRHEQF KVDGPKARAAQAMELLQALYEMADHPIKEDHLQLMLAGDASMMDEEDSPAPLTTRRAD LRARTPTQSLYLHNIATHDITFGIGPAGTGKTYLAVACAVDALERNAVQRIVLTRPAV EAGERLGFLPGDLTQKVDPYLRPLYDALYELMGFDRVQKAFERNALEIAPLAFMRGRT LNNAFVILDEAQNTTPEQMKMFLTRIGFGARAVVTGDVSQIDLPKGSLSGLIDAERVL KRVKGIAVTRFTSADVVRHPLVARIVDAYDAQRSRRGTGE" misc_feature complement(612695..613603) /locus_tag="Alide_0578" /note="Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702" /db_xref="CDD:31888" misc_feature complement(612701..613291) /locus_tag="Alide_0578" /note="PhoH-like protein; Region: PhoH; cl12134" /db_xref="CDD:196351" gene 613666..614238 /locus_tag="Alide_0579" /db_xref="GeneID:10102608" CDS 613666..614238 /locus_tag="Alide_0579" /inference="protein motif:TFAM:TIGR00084" /note="TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; KEGG: dia:Dtpsy_0493 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding class 1" /codon_start=1 /transl_table=11 /product="holliday junction DNA helicase ruva" /protein_id="YP_004125236.1" /db_xref="GI:319761299" /db_xref="GO:0003678" /db_xref="InterPro:IPR000085" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR011114" /db_xref="InterPro:IPR013849" /db_xref="GeneID:10102608" /translation="MIGKLTGALLEKNPPEVLLDCHGVGYEVLVPMSTFYNLPAVGQP VSLLTQFIVREDAQLLYGFATQQERQAFRELIKVSGVGPRTALSILSGLGVADLAQAV SLQEAGRLVKVPGIGKKTAERLLLELKGKLGADMGGRPHAASADQADILQALLALGYN DKEAAAALKGLPADVGVSEGIKLALKSLAR" misc_feature 613666..614232 /locus_tag="Alide_0579" /note="Holliday junction DNA helicase RuvA; Reviewed; Region: ruvA; PRK00116" /db_xref="CDD:178876" misc_feature 613666..613851 /locus_tag="Alide_0579" /note="RuvA N terminal domain; Region: RuvA_N; pfam01330" /db_xref="CDD:110340" gene 614275..615756 /locus_tag="Alide_0580" /db_xref="GeneID:10102609" CDS 614275..615756 /locus_tag="Alide_0580" /inference="similar to AA sequence:KEGG:Dtpsy_0494" /note="KEGG: dia:Dtpsy_0494 endoproteinase Arg-C" /codon_start=1 /transl_table=11 /product="endoproteinase arg-c" /protein_id="YP_004125237.1" /db_xref="GI:319761300" /db_xref="GeneID:10102609" /translation="MRICTIRWAALPMALALAACGGGSGSSDSGGGGSGTPEAPAWSE RIEPYDPGKSAGVAKAAAQTSSALADPADTRAVILGPLPESIAKAAAGAPAAPGVPRQ IGQPRSVAGTASVAATAALLRWNPGPDGAQVAALRFESQGARGVRLGVLVQALPPGAV LRFYGAARDEAVEVGAQELRDVAERNARAGAADAVARTYWSPDFGGPQTTLEVQIPAA ASPAAVQLAVPGLSHFTVSPAEAEGGVTAKALGDAGSCEIDVSCDAAYLEQSRSVARM TYVDETGASFYCTGTLLNDAASSGTPYFLGANHCISTQAAASTLVTDWLLRAASCGGG VNSGAWRLTGGATLLYASAATDTSFMRLNRQAPAGIVYAGSYYGGVPVGTALASVHHP EGDLQKLSLGTLRRYGNCSGGSCGASDSGSGGFLVLDWQQGSTERGSSGAAAFITIGE QRYVTGQLYGGTASCTAPTGVDYFGRFDLSYRAALYKWLKPGG" sig_peptide 614275..614364 /locus_tag="Alide_0580" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.907) with cleavage site probability 0.417 at residue 30" gene complement(615770..618574) /locus_tag="Alide_0581" /db_xref="GeneID:10102610" CDS complement(615770..618574) /locus_tag="Alide_0581" /inference="similar to AA sequence:KEGG:Ajs_3698" /note="KEGG: ajs:Ajs_3698 DnaK-related protein" /codon_start=1 /transl_table=11 /product="dnak-related protein" /protein_id="YP_004125238.1" /db_xref="GI:319761301" /db_xref="InterPro:IPR001023" /db_xref="InterPro:IPR018181" /db_xref="GeneID:10102610" /translation="MTAATGSHARHAVGIDLGTSHTVVAHVPLDGSAADIALLAIPQR VSAAEVQAQPLLPSVRYQAAPGELGDAWRAPWPPLDATEEAPATIGRWARELGAAVPA RLVGSSKSWLSHPGVDRTAPILPWGAPEGVDKVSPLAASASYLAHVKAAWDAFQPDAP LHRQAVVLTVPASFDEGARTLTLEAARLAGLPAVQLLEEPKAAFHDWLVLQGDALAAR LASSRLVLVVDVGGGTTDLTLIRVEPSPGGLPTLTRTAVGEHLMLGGDNMDLALAHQL EPQFSTGAGERLPAARFAQLVQRCRQAKEQLLAAAAPESATVTLLGGGSKLLAQARSA MLTRAQVLQCVVDGFLPPARLTDAPARRQGALRGLGLPYPADAAISRHLAQFLARHAG GELPDTVLLNGGVFHAHALAERLTQLLGEWRGSPVRVLHNPHPDWAVARGAAAHGLAQ YQSNQPRGHAGQTSTAPKTIVPRIGGGAARSYWLVLPGKAGAAPQGVCLLPRGTEEGT RLTLAGRRFALQLGQPVRFALVARSQGQAQAGQIAPLQGEGWVELPPLSTVLPAPEGR ATARAEVQLQACMSEVGVLELRCIDAQDAARSWLLPFAVRGVAAGPRPEGEEESEPKG QTAQAIALIERIFGNQAQQVAPKEVRQLRAALEKTLGARESWGLPLLRALFDALLERA RRRRRTAEHERAWFNLAGWCLRPGVGAELDGWRIGQVWQLHAQGLGHAGEAANWTEWW VFWRRVAAGLGEEQQMQLLESVAGCMQKTVQRGQGKAAWGSYDDMLRLFAAMEAVPWQ YRQEMGQWMLARLKRPGEPPQTWWAIGRLAARVPLAANAHKVMPPEAAQEFLDAALAQ DWRRNEHALFAAVQIARMTGDRARDLSDARRALVLDRMRATHAPARWIAMVEQVTDMD AEDQRRSLGDSLPPGLVLVG" misc_feature complement(<617462..618556) /locus_tag="Alide_0581" /note="Molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: DnaK; COG0443" /db_xref="CDD:30792" misc_feature complement(615776..616492) /locus_tag="Alide_0581" /note="DNA-K related protein; Region: DUF3731; pfam12531" /db_xref="CDD:152965" gene complement(618571..620463) /locus_tag="Alide_0582" /db_xref="GeneID:10102611" CDS complement(618571..620463) /locus_tag="Alide_0582" /inference="similar to AA sequence:KEGG:Daci_5720" /note="KEGG: dac:Daci_5720 heat-shock chaperone protein" /codon_start=1 /transl_table=11 /product="heat-shock chaperone protein" /protein_id="YP_004125239.1" /db_xref="GI:319761302" /db_xref="InterPro:IPR001023" /db_xref="InterPro:IPR018181" /db_xref="GeneID:10102611" /translation="MTTETIAASAGGASASARYSLGIDLGTTHCALSWVDKAASDGER VAQGVLAIPQLTAPASVEARALLPSFLYLPHESEFSPADLALPWGASQDGVVGECART RGAATPIRLVSSAKSWLCHPGVDRRAPLLPADAPPEVQRVSPLAASTRYLQHLRRAWT EAHPEAPFDAQDVTVTIPASFDPAARELTAEACKAAGFQRLTLLEEPQAALYSWIQAS AGAWRKQVAHGDVILVVDVGGGTTDLSLIAVLERGGNLELQRVAVGEHILLGGDNMDL ALAYGVARKLAQEGRQLDAWQTRALAHGCRAAKEQLLQDESLQSVPVVVPSRGSKLVG GSLRTEVTRAEVLQLLVEGFFPRVSVADRPQTRARAALTQLGLPYAQDAAVTRHLAAF LSRQTGATGQIEGLQGTQAQGASFLHPTAILFNGGVLKAPQIEQRILEVVNGWLAAEG APPARLLAGANLDLAVARGAAYYGHVAASGRGVRIRGGTAQSYYVGVESNMPAVPGME PPISALCLAPFGMEEGSEVALDAQEFGLVVGEPVRLRFFGSSVRRNDTVGTLLDFWGP EELVELQEIEAHLPAEGRTPGEVVPVTLHARVTGIGTLELDAVPVGGSERWKVEFDVR ADTPAA" misc_feature complement(618577..620412) /locus_tag="Alide_0582" /note="Molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: DnaK; COG0443" /db_xref="CDD:30792" gene complement(620460..621065) /locus_tag="Alide_0583" /db_xref="GeneID:10102612" CDS complement(620460..621065) /locus_tag="Alide_0583" /inference="similar to AA sequence:KEGG:Daci_5721" /note="KEGG: dac:Daci_5721 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125240.1" /db_xref="GI:319761303" /db_xref="GeneID:10102612" /translation="MTEQTPPSFFNRIAMAFALVGDARLAARVARLRGGEALAADAPP REVRVEVPVEKIVEVRVEVPVEKVVEKRVEVPAATAALQLLGLLQREARFVDFVQEDV AGYQDAEIGAAARVVHEGCRKALREHVTLEPVRPEAEGSRVTLPPGFDASAVRVSGNV VGQPPFTGTLAHRGWRATAVRLPQLTDTQAAAIIAQAEVEL" misc_feature complement(620466..620786) /locus_tag="Alide_0583" /note="Domain of unknown function (DUF2760); Region: DUF2760; pfam10816" /db_xref="CDD:151266" gene 621177..622250 /locus_tag="Alide_0584" /db_xref="GeneID:10102613" CDS 621177..622250 /locus_tag="Alide_0584" /inference="protein motif:TFAM:TIGR00635" /note="SMART: AAA ATPase; manually curated; KEGG: dia:Dtpsy_0499 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain" /codon_start=1 /transl_table=11 /product="holliday junction DNA helicase ruvb" /protein_id="YP_004125241.1" /db_xref="GI:319761304" /db_xref="GO:0003677" /db_xref="GO:0005524" /db_xref="GO:0009378" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR004605" /db_xref="InterPro:IPR008823" /db_xref="InterPro:IPR008824" /db_xref="GeneID:10102613" /translation="MTIHTDDFSPAPAPAPARERMVSAAPASQQEEALERALRPKLLQ EYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKTTLSHIIAAELGVNLRQTS GPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAA RSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELALIVMRSASLLGTP IDDAGGAEIARRSRGTPRIANRLLRRVRDYADVKGTGRITLDMANRALTLLDVDPQGF DVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGYLQRTPRGRV ATLAAYRHLGVAPPRAAGGLFSE" misc_feature 621234..622217 /locus_tag="Alide_0584" /note="Holliday junction DNA helicase RuvB; Reviewed; Region: ruvB; PRK00080" /db_xref="CDD:178847" misc_feature 621315..621767 /locus_tag="Alide_0584" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 621405..621428 /locus_tag="Alide_0584" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(621408..621431,621558..621560,621705..621707) /locus_tag="Alide_0584" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 621546..621563 /locus_tag="Alide_0584" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 621741..621743 /locus_tag="Alide_0584" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 621990..622211 /locus_tag="Alide_0584" /note="Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491" /db_xref="CDD:191283" gene complement(622260..622982) /locus_tag="Alide_0585" /db_xref="GeneID:10102614" CDS complement(622260..622982) /locus_tag="Alide_0585" /inference="protein motif:PFAM:PF02308" /note="PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter" /codon_start=1 /transl_table=11 /product="mgtc/sapb transporter" /protein_id="YP_004125242.1" /db_xref="GI:319761305" /db_xref="InterPro:IPR003416" /db_xref="GeneID:10102614" /translation="MQALHNINLAATLNTLVSLFFAFVFGSVIGLERQIRQRTAGLRT NALVAVGAAVFVDLAMRLDGAGGATRVVAYVVSGVGFLGAGAIMKEGINVTGLNTAAT LWGSAAVGACAGASLVVEAALATFFVLASNTLLRPVVNHINRRPVSEAAAEATYHVYA MCRQADQADVHERLLELLEAAQYPVRAVQKHPFGSTDTEIEAVLYATSVNAGELDGVV QRIEELPGVLQAYWNSGTEPTS" misc_feature complement(622281..622949) /locus_tag="Alide_0585" /note="Uncharacterized membrane protein [Function unknown]; Region: SapB; COG1285" /db_xref="CDD:31476" misc_feature complement(622272..622937) /locus_tag="Alide_0585" /note="MgtC family; Region: MgtC; cl12207" /db_xref="CDD:187193" gene complement(623038..623388) /locus_tag="Alide_0586" /db_xref="GeneID:10102615" CDS complement(623038..623388) /locus_tag="Alide_0586" /inference="similar to AA sequence:KEGG:Dtpsy_3519" /note="KEGG: dia:Dtpsy_3519 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125243.1" /db_xref="GI:319761306" /db_xref="GeneID:10102615" /translation="MLHLIRLRALRAPAATGLTHAIAPATAACALERALLAALGQRRP HLLNHLVDQAGPQAFAQALATLEARQMVEALCLLADAPRASVCAHLPPSARRRWPTAQ ARRPRGWRALLRRA" sig_peptide complement(623296..623388) /locus_tag="Alide_0586" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.774) with cleavage site probability 0.430 at residue 31" gene complement(623496..623690) /locus_tag="Alide_0587" /db_xref="GeneID:10102616" CDS complement(623496..623690) /locus_tag="Alide_0587" /inference="similar to AA sequence:KEGG:CtCNB1_4283" /note="KEGG: ctt:CtCNB1_4283 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125244.1" /db_xref="GI:319761307" /db_xref="GeneID:10102616" /translation="MTAFRHHAPRRLPPRMSAPCTAQPPAALPALEQALDLDARTVWP THRIRSFLSTQAAPAHCKPR" gene complement(624034..625197) /locus_tag="Alide_0588" /db_xref="GeneID:10102617" CDS complement(624034..625197) /locus_tag="Alide_0588" /inference="protein motif:PFAM:PF01168" /note="PFAM: alanine racemase domain protein; KEGG: dia:Dtpsy_0501 alanine racemase domain protein" /codon_start=1 /transl_table=11 /product="alanine racemase domain protein" /protein_id="YP_004125245.1" /db_xref="GI:319761308" /db_xref="InterPro:IPR001608" /db_xref="GeneID:10102617" /translation="MKSTPEHAAIGLRADQIDTPAAVIDLDAMERNIQRMAAFARQNQ VRWRPHAKMHKSAAIALLLEQAGACGHCVQKTSEAEALAAGGVRDLFISNEVIAPAKL LRVARLAARLAADGGRLAIAVDSPEGIARLAGAMDAAGSDAGIDVLVEIDVGQGRCGV PPGPEAVALARAVAARPRLRFAGLHAYQGGAQHLRATAERRAAIAHAVHAAAGTRALI EAAGLPVPLVTGAGTGTLAHEATSGVYDELQAGSFLFMDADYAANEPDTTQPAFEHAL FIKTQVISTHPTHAVCDAGHKSHAIDSGLPLVHGLAPAHALHYANGGDEHGILHAAGP QARLPALGQTLWLIPGHCDPTVNLHDRLLGVRGGLEHGVVERVIGVDARGALT" misc_feature complement(624067..625167) /locus_tag="Alide_0588" /note="Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]; Region: COG3616" /db_xref="CDD:33415" misc_feature complement(624046..625155) /locus_tag="Alide_0588" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase; Region: PLPDE_III_LS_D-TA; cd06819" /db_xref="CDD:143493" misc_feature complement(order(624100..624102,624307..624312, 624319..624321,624325..624327,624331..624333, 624343..624351,624721..624732,624805..624807, 624817..624819,624826..624828,624880..624882, 624946..624948,624964..624969,624973..624978, 625036..625038,625042..625044,625141..625143)) /locus_tag="Alide_0588" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143493" misc_feature complement(order(624310..624312,624442..624453, 624499..624504,624637..624639,624727..624729, 624748..624750,624919..624921,624982..624984, 625042..625044,625048..625050)) /locus_tag="Alide_0588" /note="active site" /db_xref="CDD:143493" misc_feature complement(order(624442..624453,624499..624504, 624637..624639,624748..624750,624919..624921, 624982..624984,625042..625044,625048..625050)) /locus_tag="Alide_0588" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143493" misc_feature complement(order(624442..624444,624637..624639, 624727..624729,625042..625044)) /locus_tag="Alide_0588" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143493" misc_feature complement(625042..625044) /locus_tag="Alide_0588" /note="catalytic residue [active]" /db_xref="CDD:143493" gene complement(625181..625828) /locus_tag="Alide_0589" /db_xref="GeneID:10102618" CDS complement(625181..625828) /locus_tag="Alide_0589" /inference="protein motif:PFAM:PF00300" /note="PFAM: Phosphoglycerate mutase; KEGG: dia:Dtpsy_0502 phosphoglycerate mutase" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase" /protein_id="YP_004125246.1" /db_xref="GI:319761309" /db_xref="InterPro:IPR000169" /db_xref="InterPro:IPR013078" /db_xref="GeneID:10102618" /translation="MNQATRIIAIRHGETAWNVDTRIQGHLDIPLNDTGLWQARQVGQ ALADEPVAAIYSSDLLRAWATAQAVAQATGAPLNPERGLRERSFGSFQGRTFEQIERE VPEQALRWRKRDPDFAPDGGGESLTMLRERIACTVHQIAARHSGQQIVLVAHGGVMDV LYRLATRLDLQAPRTWQLTNAAINRLLWTGDHGLALVGWADTQHLEDSSRDEIHS" misc_feature complement(625232..625813) /locus_tag="Alide_0589" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature complement(order(625364..625369,625646..625648, 625793..625798)) /locus_tag="Alide_0589" /note="catalytic core [active]" /db_xref="CDD:132718" gene complement(625836..626450) /locus_tag="Alide_0590" /db_xref="GeneID:10102619" CDS complement(625836..626450) /locus_tag="Alide_0590" /inference="similar to AA sequence:KEGG:Dtpsy_0504" /note="KEGG: dia:Dtpsy_0504 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125247.1" /db_xref="GI:319761310" /db_xref="GeneID:10102619" /translation="MTYMRHLCTLVLCAAIGLLAGCAGPRLVESDVSSFSTLTTLPSP PTYRIERLPSQQAHEATFAPIQAQAEAALARVGLRRDDANPRLIAQLGAEGGYATPRY WSNYGPDPFYGRWGWGWGYGGRWGWGMNWMMDSPPTLYHRRVSLVLRDAASQQVVYET SAVYEDVWTSDPAIYGVLFDQALTDFPRPPQGPRKLRTELTPQP" sig_peptide complement(626364..626450) /locus_tag="Alide_0590" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.553 at residue 29" gene complement(626624..627556) /locus_tag="Alide_0591" /db_xref="GeneID:10102620" CDS complement(626624..627556) /locus_tag="Alide_0591" /inference="protein motif:PFAM:PF01171" /note="PFAM: PP-loop domain protein; KEGG: dia:Dtpsy_0505 PP-loop domain protein" /codon_start=1 /transl_table=11 /product="pp-loop domain protein" /protein_id="YP_004125248.1" /db_xref="GI:319761311" /db_xref="InterPro:IPR011063" /db_xref="InterPro:IPR012089" /db_xref="GeneID:10102620" /translation="MNATLNAADWIGEEPATDNRKIEREQIKLEKRLCREVGRAILDF NMIEEGDRIMVCMSGGKDSYTLLDILRRLQKRAPVKFDIVAVNLDQKQPGFPEHVLPD YFKSIGVEYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADELRCTKLALGH HRDDIVATLMLNMFYGGRMKGMPPKLVSDDGRHVVIRPLCYVPEKDTARWAQYQQFPI IPCNLCGSQEGLQRVVVGEMLREWDKKFPGRIESMLRAMGHVVTTHLMDPKLHDFRNA KATGIADPDGDTAFDHEEFPAAPGLPGMQVVQIG" misc_feature complement(626720..627493) /locus_tag="Alide_0591" /note="tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional; Region: PRK10696" /db_xref="CDD:182655" misc_feature complement(626876..627403) /locus_tag="Alide_0591" /note="This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This...; Region: Alpha_ANH_like_II; cd01993" /db_xref="CDD:30180" misc_feature complement(order(627290..627292,627296..627298, 627368..627379,627383..627391)) /locus_tag="Alide_0591" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30180" gene complement(627561..627953) /locus_tag="Alide_0592" /db_xref="GeneID:10102621" CDS complement(627561..627953) /locus_tag="Alide_0592" /inference="protein motif:PFAM:PF02152" /note="PFAM: dihydroneopterin aldolase; KEGG: dia:Dtpsy_0506 dihydroneopterin aldolase" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="YP_004125249.1" /db_xref="GI:319761312" /db_xref="GO:0004150" /db_xref="InterPro:IPR006157" /db_xref="GeneID:10102621" /translation="MTEFFYHSRPGEGRQALTLTGLRFHANLGILDHEKTAPQPIQVD AELNLGPQPLAPRDDDIRHVLDYRKVRQIIIDECTAEHVNLLESLIGKLAQRLMHLPG VLGVRVKIAKLEIFDDCEVAIRVETGQW" misc_feature complement(627582..627914) /locus_tag="Alide_0592" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" misc_feature complement(order(627585..627587,627624..627626, 627831..627833,627837..627839)) /locus_tag="Alide_0592" /note="active site" /db_xref="CDD:29764" gene complement(627958..628371) /locus_tag="Alide_0593" /db_xref="GeneID:10102622" CDS complement(627958..628371) /locus_tag="Alide_0593" /inference="protein motif:PFAM:PF02152" /note="PFAM: dihydroneopterin aldolase; KEGG: dia:Dtpsy_0507 dihydroneopterin aldolase" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="YP_004125250.1" /db_xref="GI:319761313" /db_xref="GO:0004150" /db_xref="InterPro:IPR006157" /db_xref="GeneID:10102622" /translation="MNSILLAFGAIDARLATGCRALSLRRHEAAVRIGVHAHERLAAQ RMWFDVDLCVKLDHAPAARDHISETLDYDFIRDVIAREVGSQHHELQESLCDAIAAAL LQSPGVHAVRVATRKPDIYPDSASIGVERVCIKPW" misc_feature complement(627979..628302) /locus_tag="Alide_0593" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" misc_feature complement(order(627985..627987,628027..628029, 628234..628236,628240..628242)) /locus_tag="Alide_0593" /note="active site" /db_xref="CDD:29764" gene complement(628368..629174) /locus_tag="Alide_0594" /db_xref="GeneID:10102623" CDS complement(628368..629174) /locus_tag="Alide_0594" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bge:BC1002_2951 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004125251.1" /db_xref="GI:319761314" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10102623" /translation="MSESVQQDDWVLVTGAAHRLGREICLAFAAAGWNVLCHYRASQA GAQDTQAAVQALGRACLLVQADLAQPQAGTQLLDQCVALTGQAPRCIVNNASIFEADD ARTASAQGLVRHFLTNTATPLLLGNALSAWLRAQGRPATGGYSVVHVLDQKVHNLNPD YFSYTVSKLALERSVALQAQALAPHVRVCGLSPGLIYLSGPQTQDNFDRAAQVNLLRK RIEPADVARCAVFIAGNASLNGCTLQADNGQHLVPLERDVMFAITENPRP" misc_feature complement(628431..629147) /locus_tag="Alide_0594" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(628422..629144) /locus_tag="Alide_0594" /note="dihydromonapterin reductase; Provisional; Region: PRK06483" /db_xref="CDD:180586" misc_feature complement(order(628587..628598,628671..628673, 628683..628685,628722..628730,628887..628895, 629052..629060,629115..629117,629121..629126, 629130..629132)) /locus_tag="Alide_0594" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(628671..628673,628683..628685, 628722..628724,628821..628823)) /locus_tag="Alide_0594" /note="active site" /db_xref="CDD:187535" gene 629313..630398 /locus_tag="Alide_0595" /db_xref="GeneID:10102624" CDS 629313..630398 /locus_tag="Alide_0595" /inference="protein motif:PFAM:PF02636" /note="PFAM: protein of unknown function DUF185; KEGG: dia:Dtpsy_0510 protein of unknown function DUF185" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125252.1" /db_xref="GI:319761315" /db_xref="InterPro:IPR003788" /db_xref="GeneID:10102624" /translation="MTTPTDALFQHIRQDLAAAGGWIGFDRFMQLALYTPGLGYYAGG LRKLGSMPEDGSDFVTAPELSPVFGKVLAAQVREALDATGTDEVWEFGAGSGALAGQL LEALGERVRRYTIVDLSGSLRARQQERLAAHAGRVHWAERLPAAIEGVVVGNELLDAM PVQLLHRVQGAWHERGVALDAGGALAWSDRPTALRPPVEIEGGHDYLTEIHPQGEAFM RTLGERLARGAALLIDYGFGEDEYYHPQRHMGTVMCHRAHRADDDPLADVGEKDITAH VNFTAMALAAQDAGLNVLGYTSQARFLLNCGLLQEMERLTLAQRALAAKLMLEHEMGE LFKVLAVGPGEPWTPMGFAQGDRTHRL" misc_feature 629328..630347 /locus_tag="Alide_0595" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1565" /db_xref="CDD:31753" misc_feature <629646..630203 /locus_tag="Alide_0595" /note="Uncharacterized ACR, COG1565; Region: DUF185; pfam02636" /db_xref="CDD:145672" gene 630425..630829 /locus_tag="Alide_0596" /db_xref="GeneID:10102625" CDS 630425..630829 /locus_tag="Alide_0596" /inference="protein motif:PFAM:PF00903" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4030 hypothetical protein" /codon_start=1 /transl_table=11 /product="glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004125253.1" /db_xref="GI:319761316" /db_xref="InterPro:IPR004360" /db_xref="GeneID:10102625" /translation="MSLKIDRFDHIVLNVADVQASADWYARVLGMEREEFASRTGPRV AMKFGRQKINLRPVGEDAVAWFTGVNPTPGSDDLCFVTEQTADEVLAHFAAVGVVPEV GPVERTGALGPMTSVYCRDPDGNLIEVASYGG" misc_feature 630437..630820 /locus_tag="Alide_0596" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_2; cd07253" /db_xref="CDD:176676" misc_feature order(630437..630460,630509..630514,630566..630580, 630638..630673,630686..630691,630698..630700, 630725..630727,630746..630757,630782..630784, 630791..630796,630800..630802,630806..630808, 630818..630820) /locus_tag="Alide_0596" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176676" misc_feature order(630452..630454,630653..630655,630806..630808) /locus_tag="Alide_0596" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176676" gene 630833..631027 /locus_tag="Alide_0597" /db_xref="GeneID:10102626" CDS 630833..631027 /locus_tag="Alide_0597" /inference="similar to AA sequence:KEGG:Dtpsy_0515" /note="KEGG: dia:Dtpsy_0515 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125254.1" /db_xref="GI:319761317" /db_xref="GeneID:10102626" /translation="MLRWVIVVFLALVLINGITPWLKRLGLGRLPGDFQFRLFGRDWF IPLTSTLLLSFLLSMLVKWL" misc_feature 630833..>630970 /locus_tag="Alide_0597" /note="Protein of unknown function (DUF2905); Region: DUF2905; pfam11146" /db_xref="CDD:192711" gene 631170..632129 /locus_tag="Alide_0598" /db_xref="GeneID:10102627" CDS 631170..632129 /locus_tag="Alide_0598" /inference="protein motif:PFAM:PF00480" /note="PFAM: ROK family protein; KEGG: ajs:Ajs_0500 glucokinase" /codon_start=1 /transl_table=11 /product="rok family protein" /protein_id="YP_004125255.1" /db_xref="GI:319761318" /db_xref="InterPro:IPR000600" /db_xref="GeneID:10102627" /translation="MLAGVDIGGTKVAVCLAVPSGAGGPPALLARLSEPTVKTGEADA LARQVLRLLDAACAAQGLARGDVAAVGVASCGPFVRRAGRVEVSNPNICGGLAGAPRG LGNGWTRVPLEAPLAQAMGEGRVQVANDAVAALAAERRWGALRGVDDCAYVTWSTGIG VGLCVDGRVLRGKNGNAGHAGHSFVGDVAGEPPLCGCGNRGDVESLVAGNALPRRLGL QAPALLDAAARGDAAALAQVRGLCALMGRLLYNLVATLDLRRISIGGAVFLHHESLLL PLLRAELARHFAVLTDGVELVRAGLGERVGDYAALALLDSSSA" misc_feature 631179..631805 /locus_tag="Alide_0598" /note="FGGY family of carbohydrate kinases, N-terminal domain; Region: FGGY_N; cl09121" /db_xref="CDD:195797" gene complement(632090..633481) /locus_tag="Alide_0599" /db_xref="GeneID:10102628" CDS complement(632090..633481) /locus_tag="Alide_0599" /EC_number="2.4.1.15" /inference="protein motif:TFAM:TIGR02400" /note="TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; KEGG: ajs:Ajs_0501 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20" /codon_start=1 /transl_table=11 /product="alpha,alpha-trehalose-phosphate synthase (udp-forming)" /protein_id="YP_004125256.1" /db_xref="GI:319761319" /db_xref="GO:0003825" /db_xref="InterPro:IPR001830" /db_xref="InterPro:IPR012766" /db_xref="GeneID:10102628" /translation="MSRLVVVSNRLADPRKPAAGGLAVALGDALARTGGLWFGSSGAT AADLAPGEGRLRTRQAGKVLLASVDLCAEDHAAYYQGYANSVLWPVFHYRLDLAQFDP AYLVGYRRVNQMFARKLLPLLRDDDLIWVHDYHLIPLAAELRALGCRQRIGFFLHIPV PPPLVMAALPQHEWLMRSFFAYDLVGLQSEADADHLTRCMVTEAGAQELGAQRLHAYG ATVRVAAFPIGIDVEEFQALAAAPDAVGTFEALRAEYSRRQLLLGIDRLDYSKGIPQR VRAFRQLLERYPENRNSATLVMIASPSRDDVHAYADLRQELEGLCGAINGDYGTLDWM PLRYIHRTVARRRVPGLCRAARVGLVTPLRDGMNLVAKEYVVAQDEADPGVLVLSRFA GAAEQLEEALLVNPYDTQGMADAIQAALHMPLAERQWRHQRLLERIRRHDVHWWRQGF LQALEESSSASAA" misc_feature complement(632126..633475) /locus_tag="Alide_0599" /note="Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is...; Region: GT1_TPS; cd03788" /db_xref="CDD:99963" misc_feature complement(632126..633475) /locus_tag="Alide_0599" /note="alpha,alpha-trehalose-phosphate synthase [UDP-forming]; Region: trehalose_OtsA; TIGR02400" /db_xref="CDD:162840" misc_feature complement(order(632363..632365,632372..632377, 632438..632440,632669..632671,632684..632686, 633011..633013,633077..633079,633083..633085, 633245..633247,633419..633424,633452..633454)) /locus_tag="Alide_0599" /note="active site" /db_xref="CDD:99963" misc_feature complement(632681..632707) /locus_tag="Alide_0599" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:99963" gene complement(633478..635278) /locus_tag="Alide_0600" /pseudo /db_xref="GeneID:10102629" gene complement(635284..636039) /locus_tag="Alide_0601" /db_xref="GeneID:10102630" CDS complement(635284..636039) /locus_tag="Alide_0601" /inference="protein motif:TFAM:TIGR00685" /note="KEGG: dia:Dtpsy_0519 trehalose-phosphatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase" /codon_start=1 /transl_table=11 /product="trehalose-phosphatase" /protein_id="YP_004125257.1" /db_xref="GI:319761320" /db_xref="GO:0003824" /db_xref="InterPro:IPR003337" /db_xref="InterPro:IPR006379" /db_xref="GeneID:10102630" /translation="MPMPPLPTANHALFLDFDGTLADIAAQPGAVRVQPGVMDSLRDL HAALGGALAIATGRTEADIDRFLHPLRLPLACEHGALYRLGSSRAGGAHAIDLAAMLG ALRPLVASHPELLVEVKSAGIALHYRQAPQLEALCLQVLAQAMHRVSGAELMRGKCVL EVKPAGPSKGRAIADFMRQAPFAGRVPLFIGDDVTDEAGFAAVQSLGGLGVKVGEGPT QARARLGTPGEVRDWLRAAARALAQPVPALAGE" misc_feature complement(635341..636030) /locus_tag="Alide_0601" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature complement(635368..636000) /locus_tag="Alide_0601" /note="Trehalose-phosphatase; Region: Trehalose_PPase; pfam02358" /db_xref="CDD:145482" gene 636182..636628 /locus_tag="Alide_0602" /db_xref="GeneID:10102631" CDS 636182..636628 /locus_tag="Alide_0602" /inference="protein motif:TFAM:TIGR01068" /note="KEGG: dia:Dtpsy_0520 thioredoxin; TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain-containing protein" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="YP_004125258.1" /db_xref="GI:319761321" /db_xref="GO:0009055" /db_xref="GO:0015035" /db_xref="InterPro:IPR005746" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR011723" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR017936" /db_xref="InterPro:IPR017937" /db_xref="GeneID:10102631" /translation="MAPMTTEALHIVCPHCHTTNRVQAAQLGSAPDCGSCHRPLFTGE PLALDAATFDRHVGRSHVPVVVDFWAPWCGPCRQMAPAFAQAARTLEPHVRLAKLDTE AHPQIAGRYGIRSIPTMILFKGGREAARVSGALGAADIARWVNSVG" misc_feature 636206..636616 /locus_tag="Alide_0602" /note="thioredoxin 2; Provisional; Region: PRK10996" /db_xref="CDD:182889" misc_feature 636332..636616 /locus_tag="Alide_0602" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature order(636398..636400,636407..636409) /locus_tag="Alide_0602" /note="catalytic residues [active]" /db_xref="CDD:48496" gene complement(636617..637864) /locus_tag="Alide_0603" /db_xref="GeneID:10102632" CDS complement(636617..637864) /locus_tag="Alide_0603" /inference="protein motif:PFAM:PF01743" /note="PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: dia:Dtpsy_0521 polynucleotide adenylyltransferase/metal dependent phosphohydrolase" /codon_start=1 /transl_table=11 /product="polynucleotide adenylyltransferase region protein" /protein_id="YP_004125259.1" /db_xref="GI:319761322" /db_xref="GO:0003723" /db_xref="GO:0016779" /db_xref="InterPro:IPR002646" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR012006" /db_xref="GeneID:10102632" /translation="MQIYMVGGAVRDRLLGRPVNDHDWVVVGARPEDMVARGFVPVGR DFPVFLHPETHEEYALARTERKSGRGYRGFVVQASPDVTLEEDLSRRDLTINAIAASA DWIGADGLFDPYGGARDLERRVLRHVTDAFREDPVRILRVARFAARFTDFTVAPETMA LMREMVQAGEADHLVAERVWQELSRGLMEEKPSRMFDVLRACGALAVVLPEVERLWGV PQRAEHHPEVDTGVHLMMVLDMAARLSAPLAVRFACLTHDLGKGTTPADVLPRHIGHE QRSGKLLKAVAERLRVPVDCRELADVVAREHGNIHRSGELGATALVRLLERCDAIRKP ARLDDILLACECDARGRLGFEDAPYPQRARLNAALAAVQSVATSVIAARAASMGVTGQ KVGEIIHAARVQAVADWLATLAD" misc_feature complement(636620..637864) /locus_tag="Alide_0603" /note="multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed; Region: cca; PRK10885" /db_xref="CDD:182810" misc_feature complement(637499..637864) /locus_tag="Alide_0603" /note="Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398" /db_xref="CDD:143388" misc_feature complement(order(637577..637579,637586..637597, 637679..637681,637694..637696,637727..637729, 637796..637798,637802..637804,637829..637834, 637841..637846)) /locus_tag="Alide_0603" /note="active site" /db_xref="CDD:143388" misc_feature complement(order(637577..637579,637589..637597, 637796..637798,637802..637804,637832..637834, 637841..637846)) /locus_tag="Alide_0603" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143388" misc_feature complement(order(637694..637696,637796..637798, 637802..637804)) /locus_tag="Alide_0603" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143388" misc_feature complement(637220..637414) /locus_tag="Alide_0603" /note="Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627" /db_xref="CDD:193105" misc_feature complement(<636842..637168) /locus_tag="Alide_0603" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene 637931..638914 /locus_tag="Alide_0604" /db_xref="GeneID:10102633" CDS 637931..638914 /locus_tag="Alide_0604" /inference="protein motif:PFAM:PF00158" /note="KEGG: vei:Veis_3990 sigma-54 dependent trancsriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="sigma-54 factor interaction domain-containing protein" /protein_id="YP_004125260.1" /db_xref="GI:319761323" /db_xref="GO:0003700" /db_xref="GO:0005524" /db_xref="GO:0008134" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR020441" /db_xref="GeneID:10102633" /translation="MDLIGEHASIVALRQLVLRVARSKASTVLIYGETGTGKGLVARM LHRHSERCEREFIDINCAAIPGDLLESELFGYERGAFTGAAGKKEGLIESANGGTVFL DEIRELDPVMQAKILTLLDTRRFRRLGSVHPISVDVRFIAATNRILLSEVKDGKFRDD LYYRLQVIAINIPPLRERGDDIFILADRFLAKYNAVYGSTVRRLSPEVEQIFRAYQWP GNVRELENLLERICILEDGDCVEASHLPQRILREARAARPAAAGGGTPVQGYLEATAQ FQRTLIAQALARAQGHMGTAAERLALSRHALRHQMIKLGMASARDEADQAP" misc_feature 637937..638869 /locus_tag="Alide_0604" /note="psp operon transcriptional activator PspF; Region: phageshock_pspF; TIGR02974" /db_xref="CDD:163093" misc_feature 637964..638452 /locus_tag="Alide_0604" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 638024..638047 /locus_tag="Alide_0604" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(638027..638050,638237..638239,638363..638365) /locus_tag="Alide_0604" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 638225..638242 /locus_tag="Alide_0604" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 638420..638422 /locus_tag="Alide_0604" /note="arginine finger; other site" /db_xref="CDD:99707" gene 639099..640460 /locus_tag="Alide_0605" /db_xref="GeneID:10102634" CDS 639099..640460 /locus_tag="Alide_0605" /inference="similar to AA sequence:KEGG:Veis_3993" /note="KEGG: vei:Veis_3993 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125261.1" /db_xref="GI:319761324" /db_xref="GeneID:10102634" /translation="MQSLKIICPNGHLGFAPLRTESFHLGVQAGPDYIAADSGSDDVG PVPLGSDTSTSPEAWQRHDLEVMLLAARRIGVPMIIGSAGDTGSNSRVDLYVRIIREL AQKHGLKKFKLGYFYSEVDKELLRRKMRAGEAIQGLDGFADLVESELDATDRIVGMAG VHPYMELLRRGADVIIGGRSSDAAVFAAPALHHGFPADYSYYLGKVLECASFCAEPYG GKETVMGEISHGDVKVTAMLPAQRCTIASVAGHAMYERSNPYDEFFAGGRLDMRHCHY EQFDERTTRITGSRFVPSEKIRVKLEGSGKVGERYVGLCGIRDPYTIAHVDRVIEWAR EQVRARFGDGGYELHYKVYGRDGVMGELEPLRNQPGHELCVMVQGVAPMREMAEEVTL IGLRQMFYARLPDVKGTAGSVSFPLDEVLHASAAYRWTLNHTVAVDSGLELFPTHMTE AGA" misc_feature 639138..640160 /locus_tag="Alide_0605" /note="Protein of unknown function (DUF1446); Region: DUF1446; pfam07287" /db_xref="CDD:191720" gene 640475..640795 /locus_tag="Alide_0606" /db_xref="GeneID:10102635" CDS 640475..640795 /locus_tag="Alide_0606" /inference="similar to AA sequence:KEGG:Veis_3992" /note="KEGG: vei:Veis_3992 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125262.1" /db_xref="GI:319761325" /db_xref="GeneID:10102635" /translation="MTTQKLSELAKTIRSKNAGVNKITFDIIFRDGATYERVKRSRVL TREGMAGLFRIPPERISDFVEYDPGYAIKFTIYRLRPSGSAGDGDIFGAQQYAPLLDL PIPA" gene 640833..641804 /locus_tag="Alide_0607" /db_xref="GeneID:10102636" CDS 640833..641804 /locus_tag="Alide_0607" /inference="similar to AA sequence:KEGG:Veis_3991" /note="KEGG: vei:Veis_3991 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125263.1" /db_xref="GI:319761326" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102636" /translation="MRHWIASLGLLAGLLSAAAAPTHAQQAAVPRLVKIVVPFSAGAS NDAIARAIAVPLARRLHTTVIVENKAGAAGVIGADAVAKSPADGSVLLLTSSTFLTAA ATQPRLPFDPVGAFAPVAMVAQGPLVLAVSGAAPFKSPADLVAAAQASPGTLTYGSAG VGSVGHLATELLGDAAHIKLLHVPYKGAANALADLAGGQIDVMIGNQSSMAALMSGGK VRPLAVTSRQAHPAFPTLAPLAATVPGYAIDIWVGVFAPAGTPAALVERYNREINEIA ASAELAAILNPDGAVPAGLTAEAFAARLRDELGMWKRLAARHRIVAE" sig_peptide 640833..640907 /locus_tag="Alide_0607" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.965 at residue 25" misc_feature 640902..641777 /locus_tag="Alide_0607" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 640974..641792 /locus_tag="Alide_0607" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(641806..642576) /locus_tag="Alide_0608" /db_xref="GeneID:10102637" CDS complement(641806..642576) /locus_tag="Alide_0608" /inference="protein motif:PFAM:PF00149" /note="PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_0522 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004125264.1" /db_xref="GI:319761327" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10102637" /translation="MRLHILSDLHLGVQGMEHPRTDADVVVLAGDIARPEQAVAWARG FGKPVLYVPGNHEFYGASLQQTARTLRALCADGPVQLLNNRSLALRGVRFVGSTLWSD FRIAGEGQARADAMQEARRLVRDFQRIHTTEQPDAPLFSPQDAAALYDANVQWLEREL ARPFDGPTVVITHHAPSPRSIHPRFAGSPLNAIFVSDAENLVAASGARLWIHGHTHDS FDYLLHGTRVLCNPRGYGKDGMNENPLFDPALVAEVAA" misc_feature complement(641929..642576) /locus_tag="Alide_0608" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature complement(641872..642570) /locus_tag="Alide_0608" /note="Microscilla MS158 and related proteins, metallophosphatase domain; Region: MPP_MS158; cd07404" /db_xref="CDD:163647" misc_feature complement(order(641929..641931,641935..641937, 642058..642060,642409..642414,642484..642486, 642547..642549,642553..642555)) /locus_tag="Alide_0608" /note="putative active site [active]" /db_xref="CDD:163647" misc_feature complement(order(641929..641931,641935..641937, 642058..642060,642412..642414,642484..642486, 642547..642549,642553..642555)) /locus_tag="Alide_0608" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163647" gene complement(642595..643281) /locus_tag="Alide_0609" /db_xref="GeneID:10102638" CDS complement(642595..643281) /locus_tag="Alide_0609" /inference="protein motif:PFAM:PF02798" /note="PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_0507 glutathione S-transferase domain-containing protein" /codon_start=1 /transl_table=11 /product="glutathione s-transferase domain protein" /protein_id="YP_004125265.1" /db_xref="GI:319761328" /db_xref="InterPro:IPR004045" /db_xref="GeneID:10102638" /translation="MLQLYIGNKNYSSWSMRPWVLLRQAGIAFEEVPVRFDSFDANSQ FKRRLKAVSPTAKVPVLVDGGLTVWDSLAIAEYLAETHPDKRLWPEDRAARAHARSVT AEMHSGFTALRGHCPMNIEARLPEVGAILWRDQAGVRADVQRLADMWGELLARHGGPM LFGHFTIADAFYAPVCMRLATYALPLPRPIADYVQRVRQLPGVKAWIDGALAEQDFLD FEEPYRARRG" misc_feature complement(642661..643281) /locus_tag="Alide_0609" /note="glutathione S-transferase; Provisional; Region: PRK15113" /db_xref="CDD:185068" misc_feature complement(643045..643275) /locus_tag="Alide_0609" /note="GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH)...; Region: GST_N_1; cd03043" /db_xref="CDD:48592" misc_feature complement(order(643054..643059,643066..643068, 643210..643215,643222..643227,643231..643236, 643240..643242)) /locus_tag="Alide_0609" /note="putative C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48592" misc_feature complement(order(643069..643074,643105..643113, 643240..643242)) /locus_tag="Alide_0609" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48592" misc_feature complement(order(643054..643056,643063..643068, 643072..643077,643111..643113)) /locus_tag="Alide_0609" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48592" misc_feature complement(642658..643008) /locus_tag="Alide_0609" /note="GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous...; Region: GST_C_3; cd03194" /db_xref="CDD:48121" misc_feature complement(order(642748..642750,642760..642762, 642769..642774,642781..642783,642976..642978, 642997..642999)) /locus_tag="Alide_0609" /note="putative N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48121" misc_feature complement(order(642850..642852,642985..642987, 642994..642999)) /locus_tag="Alide_0609" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48121" misc_feature complement(order(642748..642750,642757..642759, 642949..642954,642961..642966,642976..642978)) /locus_tag="Alide_0609" /note="putative substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48121" gene complement(643370..643942) /locus_tag="Alide_0610" /db_xref="GeneID:10102639" CDS complement(643370..643942) /locus_tag="Alide_0610" /inference="protein motif:TFAM:TIGR02727" /note="KEGG: dia:Dtpsy_0524 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase" /codon_start=1 /transl_table=11 /product="5-formyltetrahydrofolate cyclo-ligase" /protein_id="YP_004125266.1" /db_xref="GI:319761329" /db_xref="GO:0005524" /db_xref="GO:0030272" /db_xref="InterPro:IPR002698" /db_xref="GeneID:10102639" /translation="MDKAALRRTLVAQRLDMPDRLRRADLLQRVMRIWLVDRPDTVIG AYWPIKGEFDPLPALHRWKEDGELLDEPQRRRIGLPVVNKQHRTLTFHAWYPGCEMEE DAYGIPKPKDTEVIVPTLLFVPCVGYGPGGYRLGYGGGFYDRTLATLQPRPFTVGLGF TQGYLDDFEPEAHDMPLDAILNDNGVVWPV" misc_feature complement(643397..643936) /locus_tag="Alide_0610" /note="5-formyltetrahydrofolate cyclo-ligase family; Region: 5-FTHF_cyc-lig; cl00360" /db_xref="CDD:193786" gene 643957..645939 /locus_tag="Alide_0611" /db_xref="GeneID:10102640" CDS 643957..645939 /locus_tag="Alide_0611" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase catalytic; KEGG: dia:Dtpsy_0525 lytic transglycosylase catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic" /protein_id="YP_004125267.1" /db_xref="GI:319761330" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10102640" /translation="MHWLKILTPLIAGAALAAAAPWAAAQNRGDDTLLEMQQAFRKGD KSRLTALLPTVRGHPLEPWAAYWELRARLDQAQSDQVNAFLQRFAGTYQEDRLRNDWL LLLGQRRDWDQFADLHPYYRMGDDREVRCYALAIDQIKGTAAEDAGAEVLSNWYALRD LDDGCSNAAAEMLAARKIKPLDVWRKARLAAEANRLRMARKAVEIVAPDALAQLREAL DSPTKYLTGRATARGKERQELVVLALVRMAMSDAGAAAGLLDSKWGVHLSAEERNWLW GLIGKQAALSLSPDALAYFGNVGRDTDLNDDMLAWKVRAALRAGQWKLVGRSIDAMSA RARQDSTWVYWKARSLTAGRASEEDRAAARQLYERIAGTTGFYEQLALEELGARVTPA PAPAPLTDAEKAAARANPGLNRALYAIALGLRSEGVREWNYTTNLHQQGGMSERELLA AADLACERQVWDRCINTSERTRDVIDVAQRFPMPYQATVVQLARGIGLDPAYVYGLIR QESRFIMDARSGVGASGLMQVMPATARWTARKIGLTGFTPQQINDRDTNITIGTAYLK LALDDFDGSMPLAAAAYNAGPGRPRNWRNGPVLDAAIWAENVPFNETRDYVKKVLANT VNYAAILTGQPQSLKSRLGLVGPRDAREPEPNKDLP" sig_peptide 643957..644028 /locus_tag="Alide_0611" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.898 at residue 24" misc_feature 644056..645870 /locus_tag="Alide_0611" /note="lytic murein transglycosylase; Provisional; Region: PRK11619" /db_xref="CDD:183236" misc_feature 645454..645825 /locus_tag="Alide_0611" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(645484..645486,645544..645546,645646..645648, 645703..645705) /locus_tag="Alide_0611" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 645484..645486 /locus_tag="Alide_0611" /note="catalytic residue [active]" /db_xref="CDD:29556" gene complement(646002..646529) /locus_tag="Alide_0612" /db_xref="GeneID:10102641" CDS complement(646002..646529) /locus_tag="Alide_0612" /inference="similar to AA sequence:KEGG:Ajs_0510" /note="KEGG: ajs:Ajs_0510 cytochrome b561" /codon_start=1 /transl_table=11 /product="cytochrome b561" /protein_id="YP_004125268.1" /db_xref="GI:319761331" /db_xref="GeneID:10102641" /translation="MRVWDAPVRLLHWGMVAAVAVAWWSSDDTGPLHENMGYVVVALL AARLAWGFRGSHYARFAQFVRAPRAALAYARAALAGHAPRYIGHNPLGGWMVLALLAD LGLLGFTGWLYTTDMFWGYGWLANLHKCLGWALLALIALHVAGMLWTSWQHRENLVRA MVTGAKAPPRGDDVV" misc_feature complement(646032..646526) /locus_tag="Alide_0612" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene complement(646529..646801) /locus_tag="Alide_0613" /db_xref="GeneID:10102642" CDS complement(646529..646801) /locus_tag="Alide_0613" /inference="similar to AA sequence:KEGG:Dtpsy_0527" /note="KEGG: dia:Dtpsy_0527 signal peptide protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125269.1" /db_xref="GI:319761332" /db_xref="GeneID:10102642" /translation="MTTSWITRIAALALAASAGAAFAHGKVECKEYPKAEWRPHTELE KKLVQEGWTIRRMEKTDTCYEVYGKTPDGKRVEAFFDPKTFERVED" sig_peptide complement(646730..646801) /locus_tag="Alide_0613" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.981 at residue 24" misc_feature complement(646535..>646717) /locus_tag="Alide_0613" /note="Uncharacterized conserved protein [Function unknown]; Region: COG5591" /db_xref="CDD:35150" gene complement(646938..647621) /locus_tag="Alide_0614" /db_xref="GeneID:10102643" CDS complement(646938..647621) /locus_tag="Alide_0614" /inference="protein motif:PFAM:PF03171" /note="KEGG: ajs:Ajs_0512 hydroxylase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit" /codon_start=1 /transl_table=11 /product="2og-fe(ii) oxygenase" /protein_id="YP_004125270.1" /db_xref="GI:319761333" /db_xref="GO:0016491" /db_xref="InterPro:IPR005123" /db_xref="InterPro:IPR006620" /db_xref="GeneID:10102643" /translation="MLISIDQVLTKEQVRQFRQELDAANWDDGAATAGTLAKAVKRNQ QIPDGSELAVRLGQQILHRLAQTPLFISAALPRTIYPPKFNRYAGGGTYGAHVDSALM YLPGSSQQMRTDLSATLFLAEPEEYEGGELEVEGPFGVQTVKLSAGDMVLYPSTSLHR VTPVTNGARVASFFWIESLVADESERTLLFDLDQSIQQLTPLVAPDDMRLVQLTGVYH NLLRRWAKP" misc_feature complement(646947..647621) /locus_tag="Alide_0614" /note="2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy; cl01206" /db_xref="CDD:194067" gene complement(647615..648712) /locus_tag="Alide_0615" /db_xref="GeneID:10102644" CDS complement(647615..648712) /locus_tag="Alide_0615" /inference="protein motif:PFAM:PF01070" /note="PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ajs:Ajs_0513 (S)-2-hydroxy-acid oxidase" /codon_start=1 /transl_table=11 /product="fmn-dependent alpha-hydroxy acid dehydrogenase" /protein_id="YP_004125271.1" /db_xref="GI:319761334" /db_xref="GO:0016491" /db_xref="InterPro:IPR000262" /db_xref="InterPro:IPR012133" /db_xref="GeneID:10102644" /translation="MSPSDRIPPGVWNAIDYERLAPQAMDAGRHAYVAGGCGWDATVA ANRAAFAGWAVLPRLLRDVRAGHTRLQLAGMDLPHPLLLAPVAHQRLAHPDAEIATAR AAQATGSCLVASTLSSCTLEDIAAASGPARWFQLYLQPEREHSLDLLRRAEAAGYRAI VLTLDASIQLASRGALQAGFAMPADCVSANLARYPQPAPAQPAAGESRIFQGAMRHAP RWDDLRWLLASTRLPVWIKGVLHPEDARELQAAGAAGLIVSNHGGRSLDGAPASLRML PALRTAVGAGYPLLLDGGVRSGQDAFKALALGADAVLVGRLQVYALAVAGALGVAHML QMLVEELHACMAQAGCARLSDITHDTLTPSC" misc_feature complement(647642..648667) /locus_tag="Alide_0615" /note="Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate...; Region: alpha_hydroxyacid_oxid_FMN; cd02809" /db_xref="CDD:73371" misc_feature complement(647624..648652) /locus_tag="Alide_0615" /note="FMN-dependent dehydrogenase; Region: FMN_dh; pfam01070" /db_xref="CDD:189831" misc_feature complement(order(647765..647767,647921..647923, 647930..647932,648002..648004,648194..648196, 648218..648220,648302..648304,648371..648373, 648617..648619)) /locus_tag="Alide_0615" /note="active site" /db_xref="CDD:73371" misc_feature complement(order(647921..647923,647930..647932, 648194..648196,648302..648304,648617..648619)) /locus_tag="Alide_0615" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73371" misc_feature complement(order(647765..647767,647921..647923, 647930..647932,648002..648004,648218..648220, 648302..648304,648371..648373)) /locus_tag="Alide_0615" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73371" misc_feature complement(order(647930..647932,648194..648196, 648302..648304)) /locus_tag="Alide_0615" /note="putative catalytic residues [active]" /db_xref="CDD:73371" gene complement(648766..651054) /locus_tag="Alide_0616" /db_xref="GeneID:10102645" CDS complement(648766..651054) /locus_tag="Alide_0616" /inference="protein motif:PFAM:PF00593" /note="PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_0514 TonB-dependent receptor" /codon_start=1 /transl_table=11 /product="tonb-dependent receptor" /protein_id="YP_004125272.1" /db_xref="GI:319761335" /db_xref="GO:0004872" /db_xref="GO:0005215" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR012910" /db_xref="GeneID:10102645" /translation="MPSFSSIKKPKNLRMAAALLPLSAMAQQAPAPLHTLPAVTVQEQ AIDPNPNAEVGAPYKAKTSADTRHTRPLAETPQTIQVVTKSAIDDSGATDLKQILAAQ PGITLGTGENGNAFGDRYIIRGQEARSDVFVDGLRDPGMTTRESFAIEQIEITKGPNS SFAGRGSAGGAINAITKQATLDYDFTRVSAGVGTDSHHRLTMDMNKAFSDTFALRANA LTAGEDVPDRSPSRRRRDGLALSGLWEVNSDLSVTLDYYGLRAKDKHPDLGGYLVGTV PNRRPATGVPVYAQGNDFLQSDVDTATARINYRFAPNVRLTSLTRYGQSDNGYATTGA SFNATAQRPAIDGGHTGWQEVKYFAHQDNLRWDKEIGGLKHEFIFGFEYTNHRVKSGN YRVTSAGTPNCRTSATATSNNGFCMTDANGVLLPNLGDLAGRSYDRNAMSRDWHVKTF ALSVMDTVDLTDRWTLFGGLRADHTDLSLSTYNAGTGAQTADYGYNDTLLNGHLGVSY KINPMGMVYASYGTAQDINGGESDVGTSAGYGGLVVDRFGNANAKPETSQNFEIGTKW NLLDDKLLLTAAAFRTTKKDVMEAAPGNTGYDSAGMFNTGKNRVQGIEFGLAGNVTKQ LQMQAGMAFMKSKVLGSVNPANIGNPLSNFADRTFGVQGKYQLTRDFSLGAGARYESD RCGGQPDTGAGYANGMCSQPVPSFTVYDLFASYRINKHADLRLNVLNATDKDYYTAVY RSGAFLYKGDGRAVRLTLNLDL" sig_peptide complement(650974..651054) /locus_tag="Alide_0616" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.917 at residue 27" misc_feature complement(648775..650931) /locus_tag="Alide_0616" /note="Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; Region: Fiu; COG4774" /db_xref="CDD:34387" misc_feature complement(648772..650823) /locus_tag="Alide_0616" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature complement(order(650527..650553,650587..650619, 650644..650664,650683..650697,650737..650766, 650794..650823)) /locus_tag="Alide_0616" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature complement(order(649978..649980,650059..650061)) /locus_tag="Alide_0616" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene complement(651209..652135) /locus_tag="Alide_0617" /db_xref="GeneID:10102646" CDS complement(651209..652135) /locus_tag="Alide_0617" /inference="similar to AA sequence:KEGG:Ajs_0515" /note="KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain-containing protein" /protein_id="YP_004125273.1" /db_xref="GI:319761336" /db_xref="GeneID:10102646" /translation="MPIESPALPPEITVFERGWLSANNVLFHGHGATVLVDSGYCAHA AQTVALVESGLQGRPLDRLLNTHLHSDHCGGNAALQARWPRLITHIPPGQWDQVQAWD PVALSYEPTGQDCPRFRADGRLMPGSELTLGGSAWQVHAAPGHDPHAVLLFEPRARVL ISGDALWENGFGVVFPELDGAHAFADVGATLDLIEQLDPLTVIPGHGSVFGGVPAAIA RARRRLAGFEADPIKHARHAAKVLLKYKLLEWQQAPLAQVQAWLAATPYYARLHGRYF ADRSAVQWTAEMVQELVDGGAARREGEMLHNA" misc_feature complement(651518..652087) /locus_tag="Alide_0617" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(652154..653839) /locus_tag="Alide_0618" /db_xref="GeneID:10102647" CDS complement(652154..653839) /locus_tag="Alide_0618" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004125274.1" /db_xref="GI:319761337" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10102647" /translation="MDRIWLRNYPPGVPHEVDADAYPSVAQMLEESFRRHADRPFSVC MDRWMRYGELDRLSARLGAWLQGQGLEPGARVAIMLPNVPQFAVTMAAVLRAGYTCVN VNPLYTARELAHQLQDSGACAIVILENFAHTLAEVIEDTAVRHVVVASMGDLLGPWRG RWISFAVRHLAKMVPAYALPLSGGRQVLPFRRALALGARRRLNPPRVTPDTPAFLQYT GGTTGLSKGAVLTQRNIIAATLQAEAWFGPALARVGDTRRINSIAALPLYHIFALTLC LLAIRQGSHLTLIPNPRDIPKFVQVLKKRPFHLLPAVNTLFNALLQNAQFRRLDFSQL CVSQAGGMAASEATAGQWKRLTGNTMIEGWGMSETCAIGTNNPVNSQAFNGSIGLPLP GIDIAIKDDAGASLPLGQPGEICIRGPNVMPGYWNQPEENARAFTADGFMRTGDIGVM DAQGYTRIVDRKKDMILVSGFNVYPNELEQVVAQCPGVLECAAVGVTDDKQGEAIKVF VVRSDPALTENEVERHCHQHLTGYKRPKYIEFRDELPKTNVGKILRRELRASK" misc_feature complement(652157..653839) /locus_tag="Alide_0618" /note="Long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07059" /db_xref="CDD:180816" misc_feature complement(652163..>653206) /locus_tag="Alide_0618" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 653962..654864 /locus_tag="Alide_0619" /db_xref="GeneID:10102648" CDS 653962..654864 /locus_tag="Alide_0619" /inference="similar to AA sequence:KEGG:Dtpsy_0533" /note="KEGG: dia:Dtpsy_0533 PGAP1 family protein" /codon_start=1 /transl_table=11 /product="pgap1 family protein" /protein_id="YP_004125275.1" /db_xref="GI:319761338" /db_xref="GeneID:10102648" /translation="MTNARWQRWLVALHWLLMAAWVLGFWRRSPALALAGLAAVPLLS RLCMLPQFLLMAWVCRHDETPRPGPAQLLRAWWAESRWAALVFGWWQPFRERAVADWL PPPGAGTPRGVVLVHGFLCNRAFWTPWFALLRARGHAFVAVTLEPAFGSIDGYAPAID AAVRRVAEATGRAPLVVGHSMGGLAIRAWLRAVPGADARVHRIVTLGTPHHGTWPAAH ARSTNGAQMRLHGPWVRQLRAQEPPGRAVLFVCWYSNGDNVAYPPAAAMLEGADNRFI AGVAHVEMAFDPRVLRDCLALLEA" misc_feature 654205..>654753 /locus_tag="Alide_0619" /note="Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]; Region: LipA; COG1075" /db_xref="CDD:31273" misc_feature <654487..>654711 /locus_tag="Alide_0619" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(654967..656184) /locus_tag="Alide_0620" /db_xref="GeneID:10102649" CDS complement(654967..656184) /locus_tag="Alide_0620" /inference="protein motif:PFAM:PF00109" /note="PFAM: Beta-ketoacyl synthase; KEGG: dia:Dtpsy_0542 beta-ketoacyl synthase" /codon_start=1 /transl_table=11 /product="beta-ketoacyl synthase" /protein_id="YP_004125276.1" /db_xref="GI:319761339" /db_xref="InterPro:IPR014030" /db_xref="InterPro:IPR014031" /db_xref="InterPro:IPR018201" /db_xref="GeneID:10102649" /translation="MSKRRVVITGAGIVSCIGNDLQTVESALREGKSGIKAVPKFTEL GLRSQVAGVPEIDIEARIDRKQLRFMGDAAAYAQIALEDAIAQAGLTPSQVSHPRTGL IMGSGGGSPANQIEAADTLREKGIRRVGPYQVTRCMSSTVSACLATNFKVKGINYSIT SACSTSAHCIGAAAQQIAWGMQDVMFAGGGEELSWGMALLFDGMGAMSAKYNATPEKA ARAYDANRDGFVIAGGGGAVVLESLEHAQARGATILAEVVGFGATSDGEDMVAPSGDG AIACMRQAMEGLDGPIDYINTHGTSTPVGDMQEVRAMQAVFGDAVPPFSSTKSLTGHS LGATGVQEAIYCLIMLNKGFIAGSVNVETPDPQLGGMPLVTQTRDADLTSVLSNSFGF GGTNASLVLRRWK" misc_feature complement(654970..656175) /locus_tag="Alide_0620" /note="3-oxoacyl-(acyl carrier protein) synthase I; Reviewed; Region: PRK07967" /db_xref="CDD:181184" misc_feature complement(654982..656175) /locus_tag="Alide_0620" /note="Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834" /db_xref="CDD:29421" misc_feature complement(order(655000..655002,655006..655008, 655348..655350,655384..655398,655573..655578, 655585..655587,655648..655650,655657..655662, 655669..655671,655705..655713,655717..655719, 655723..655725,655741..655743,655753..655755, 655765..655767,655783..655785,655819..655824, 655828..655830,655840..655845,655864..655866)) /locus_tag="Alide_0620" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29421" misc_feature complement(order(655186..655188,655291..655293, 655696..655698)) /locus_tag="Alide_0620" /note="active site" /db_xref="CDD:29421" gene complement(656199..656705) /locus_tag="Alide_0621" /db_xref="GeneID:10102650" CDS complement(656199..656705) /locus_tag="Alide_0621" /EC_number="4.2.1.60" /inference="protein motif:TFAM:TIGR01749" /note="TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: dia:Dtpsy_0541 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ" /codon_start=1 /transl_table=11 /product="beta-hydroxyacyl-(acyl-carrier-protein) dehydratase faba" /protein_id="YP_004125277.1" /db_xref="GI:319761340" /db_xref="GO:0008693" /db_xref="InterPro:IPR010083" /db_xref="InterPro:IPR013114" /db_xref="GeneID:10102650" /translation="MADSFSYEQLIASGEGRLFTPDSGRLPLPPMLMFDRITHIDADG GAHGLGKIVAELDVKPDLWFFACHFQGDPVMPGCLGLDAMWQLIGFYLTWLRLPGRGR ALGAGEVKFTGEVGPDVKLVTYEIDIKRVIKRKLNMAIGDARLLADGKEIYVANDLRV GLFLREGD" misc_feature complement(656217..656633) /locus_tag="Alide_0621" /note="FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA...; Region: FabA; cd01287" /db_xref="CDD:48032" misc_feature complement(order(656364..656369,656373..656375, 656379..656405,656460..656462,656472..656474, 656625..656627,656631..656633)) /locus_tag="Alide_0621" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48032" misc_feature complement(order(656394..656405,656436..656441, 656448..656453,656460..656462,656628..656633)) /locus_tag="Alide_0621" /note="active site 1 [active]" /db_xref="CDD:48032" misc_feature complement(order(656364..656375,656475..656483)) /locus_tag="Alide_0621" /note="active site 2 [active]" /db_xref="CDD:48032" gene complement(656794..658383) /locus_tag="Alide_0622" /db_xref="GeneID:10102651" CDS complement(656794..658383) /locus_tag="Alide_0622" /inference="protein motif:TFAM:TIGR00546" /note="KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase" /codon_start=1 /transl_table=11 /product="apolipoprotein n-acyltransferase" /protein_id="YP_004125278.1" /db_xref="GI:319761341" /db_xref="GO:0016410" /db_xref="InterPro:IPR003010" /db_xref="InterPro:IPR004563" /db_xref="GeneID:10102651" /translation="MAPPRLAGAPAPCRGPLSWLLALAAGLAQAASLAWPGPGGMKGQ PLWWLQILSLALLARVLLAAGGARRGALLSWLFATAWLAGTFWWLFISMHTYGGLAAP LAVLAVLGLAVFLGSYYAAASALFWTLRPYNRSSAAIVFAALWLLAELARGQWWTGFP WGAGGYAHTDGPLAVLARWLGVYGMGLAAALLAMGLAQWRRADLRRPRWWAGAAVLVL AWACLAAQRHCAIEGCGAPAPQHAPLSLALLQGNIPQDEKFQPGSGVPMALQWYHDQL RAADAALVVAPETAIPLLPQQLAPGYLDAIAERYGKGAQALLLGIPLGSLEQGYTNSV LGFAPDGRRPYRYDKHHLVPFGEFIPPFFRWFTDMMNIPLGDFDRGALDQPSLAWAGE RIAPNICYEDLFGEELGARFRDPQSSPTIMANLSNIGWFGDTVAIDQHLAISRLRALE FERPMVRATNTGATAVIDHRGRVSHRLPSYQRGVLHARVQGRDGAVTPYAWWVSRLGL APLWALGLGVAAWAWLLRRKT" misc_feature complement(656878..657654) /locus_tag="Alide_0622" /note="Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571" /db_xref="CDD:143595" misc_feature complement(order(657103..657105,657175..657180, 657184..657189,657313..657315,657325..657327, 657337..657339,657520..657522)) /locus_tag="Alide_0622" /note="putative active site [active]" /db_xref="CDD:143595" misc_feature complement(order(657187..657189,657337..657339, 657520..657522)) /locus_tag="Alide_0622" /note="catalytic triad [active]" /db_xref="CDD:143595" misc_feature complement(order(656995..657000,657034..657039, 657043..657051,657055..657060,657154..657159, 657166..657180,657184..657186,657295..657303, 657316..657318,657325..657336)) /locus_tag="Alide_0622" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143595" gene complement(658383..659270) /locus_tag="Alide_0623" /db_xref="GeneID:10102652" CDS complement(658383..659270) /locus_tag="Alide_0623" /inference="protein motif:PFAM:PF00571" /note="PFAM: CBS domain containing protein; transporter-associated region; KEGG: ajs:Ajs_0523 CBS domain-containing protein" /codon_start=1 /transl_table=11 /product="cbs domain containing protein" /protein_id="YP_004125279.1" /db_xref="GI:319761342" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR005170" /db_xref="GeneID:10102652" /translation="MSDPYPARAPEKEDKRTFLQRLIEFLNPGPDSTAELIATLAEAE DNEVINADARVMLERVLRMAEMTTSDVMVPAPRMDMLDIDAPLDELMAQVLRTAHSRF PVYQGERDNIIGILLAKDLLKLWRSPELNVRTLVRPALFVPESKGLHALEREFRSTRN HMAIVIDEFGRIAGLVTFEDVIEQIVGEIEDEFDIHEDEGDIFGLADHSYRVSGDTPV ERVAEAFGVALRGSDPDEEFDTIGGLIAHELGRVPRKGETVTLCGLRFVVLHTKGGLV RWFKVTPAPADAAPDGSAR" misc_feature complement(658464..659270) /locus_tag="Alide_0623" /note="Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]; Region: CorC; COG4535" /db_xref="CDD:34182" misc_feature complement(658719..659045) /locus_tag="Alide_0623" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590" /db_xref="CDD:73090" misc_feature complement(658425..658658) /locus_tag="Alide_0623" /note="Transporter associated domain; Region: CorC_HlyC; pfam03471" /db_xref="CDD:190650" gene complement(659381..660082) /locus_tag="Alide_0624" /db_xref="GeneID:10102653" CDS complement(659381..660082) /locus_tag="Alide_0624" /inference="protein motif:PFAM:PF00583" /note="KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="gcn5-related n-acetyltransferase" /protein_id="YP_004125280.1" /db_xref="GI:319761343" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10102653" /translation="MLPTKNWLRACLDVGRRPHRGLAMNTVMVPVRTLGPRHRERIAR HLLGLSERDRYLRFGYAATDEQVRRYVDLLDFGRDEVFGIFNRRLELIAMAHVAFAES KDYQGCAEFGVSVLASARGRGYGARLFERSVMLARNRGVRMMFIHALTENTAMLKIAR NAGASVQHDGSESEAYLQLPPAGLDTRVSEIVAEQFGEVDYQLKKQARQFWRLLADMQ EIRQGVREGRHQAAE" misc_feature complement(659594..659815) /locus_tag="Alide_0624" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(660233..660718) /locus_tag="Alide_0625" /db_xref="GeneID:10102654" CDS complement(660233..660718) /locus_tag="Alide_0625" /inference="protein motif:PFAM:PF01037" /note="KEGG: dia:Dtpsy_0537 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type" /codon_start=1 /transl_table=11 /product="transcription regulator asnc-type-like protein" /protein_id="YP_004125281.1" /db_xref="GI:319761344" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000485" /db_xref="InterPro:IPR019887" /db_xref="InterPro:IPR019888" /db_xref="GeneID:10102654" /translation="MSERTVALDKLDRAILRRLQDNGRETYDLIGAQVGLSPSAVLRR ARRLEELGVIDRYVALVRPERVGLGLTAYLNVRLEKHTESHKRNPMDLFRASVQTWPE VVECAALTGEMDYLLRVVVADMAHYSRFIMDTLLKHPSVQDCKTSFVLDRVKATTALP V" misc_feature complement(660236..660709) /locus_tag="Alide_0625" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(660356..660697) /locus_tag="Alide_0625" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(660263..660442) /locus_tag="Alide_0625" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 660878..661999 /locus_tag="Alide_0626" /db_xref="GeneID:10102655" CDS 660878..661999 /locus_tag="Alide_0626" /EC_number="1.13.11.27" /inference="protein motif:TFAM:TIGR01263" /note="TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: ajs:Ajs_0520 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylpyruvate dioxygenase" /protein_id="YP_004125282.1" /db_xref="GI:319761345" /db_xref="GO:0003868" /db_xref="InterPro:IPR004360" /db_xref="InterPro:IPR005956" /db_xref="GeneID:10102655" /translation="MTAALPTQAARETTAWENPMGLMGFEFVEFTSPQPGLLEDVFEK LGFTLVARHRSKDVLLYRQNQINFILNREPHSQAAYFGAEHGPSACGLAFRVKDAHRA YKRALELGAQPIEIPTGPMELRLPAIKGIGGAPLYLIDRFEDGKSIYDIDFEWLEGVP QRPEGHGLKEIDHLTHNVYRGRMGFWANFYEKLFNFREIRYFDIQGEYTGLTSKAMTA PDGRIRIPLNEEARQGGGQIEEFLMQFNGEGIQHIALVCDRLTDVVDRLGLAGVPLAP APNDVYYEMLDKRLPGHGQDVAALQARGILLDGSTAGGQPRLLLQIFSTPMLGPVFFE FIQREGDEGFGEGNFKALFESLERDQVNRGVIDTRAKGG" misc_feature 660944..661975 /locus_tag="Alide_0626" /note="4-hydroxyphenylpyruvate dioxygenase; Region: 4HPPD; TIGR01263" /db_xref="CDD:162275" misc_feature 660950..661339 /locus_tag="Alide_0626" /note="N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS); Region: HPPD_N_like; cd08342" /db_xref="CDD:176690" misc_feature order(660983..660991,660995..661000,661046..661048, 661052..661054,661136..661138) /locus_tag="Alide_0626" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176690" misc_feature 661379..661951 /locus_tag="Alide_0626" /note="C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS); Region: HPPD_C_like; cd07250" /db_xref="CDD:176673" misc_feature order(661394..661396,661514..661516,661553..661555, 661559..661561,661586..661588,661631..661633, 661844..661846,661877..661879,661907..661909, 661919..661924) /locus_tag="Alide_0626" /note="active site" /db_xref="CDD:176673" misc_feature order(661394..661396,661631..661633,661877..661879) /locus_tag="Alide_0626" /note="Fe binding site [ion binding]; other site" /db_xref="CDD:176673" gene 662001..662825 /locus_tag="Alide_0627" /db_xref="GeneID:10102656" CDS 662001..662825 /locus_tag="Alide_0627" /EC_number="1.14.16.1" /inference="protein motif:TFAM:TIGR01267" /note="TIGRFAM: phenylalanine-4-hydroxylase; KEGG: dia:Dtpsy_0534 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase-like" /codon_start=1 /transl_table=11 /product="phenylalanine-4-hydroxylase" /protein_id="YP_004125283.1" /db_xref="GI:319761346" /db_xref="GO:0004505" /db_xref="InterPro:IPR005960" /db_xref="InterPro:IPR018301" /db_xref="InterPro:IPR019774" /db_xref="GeneID:10102656" /translation="MAVQPAVYGASERPPRGDYTRARDDYTCAQDWAAYTAQDHDTYH RLYLRQSAQLPGLASEAFIAALPLLGAKERIPRFDDVNERLYRATRWQLVAVPGLIPE VPFFRLLAARKFPVTDWIRRPEEFEYIVEPDVFHDLFGHVPLLFNPVLADYMQRYGEG GLKAARLGACEMLARLYWYTIEFGLIREAAGLRAYGAGILSSHGELPYSVRSPEPQRL PLSLERAMRTRYKIDSYQQTYFVIDGFEQLFDLTAQDFEPLYARLRGLPEFAAGAG" misc_feature 662073..662750 /locus_tag="Alide_0627" /note="Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH)...; Region: pro_PheOH; cd03348" /db_xref="CDD:48244" misc_feature order(662286..662288,662292..662300,662304..662306, 662313..662315,662469..662471,662529..662531) /locus_tag="Alide_0627" /note="cofactor binding site; other site" /db_xref="CDD:48244" misc_feature order(662406..662408,662421..662423,662544..662546) /locus_tag="Alide_0627" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:48244" gene 662966..664201 /locus_tag="Alide_0628" /db_xref="GeneID:10102657" CDS 662966..664201 /locus_tag="Alide_0628" /EC_number="1.2.4.4" /inference="protein motif:PRIAM:1.2.4.4" /note="KEGG: pol:Bpro_0273 branched-chain alpha-keto acid dehydrogenase E1 component; PFAM: dehydrogenase E1 component" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)" /protein_id="YP_004125284.1" /db_xref="GI:319761347" /db_xref="InterPro:IPR001017" /db_xref="GeneID:10102657" /translation="MTPHTALRLHVPEPTGRPGCSTDFSYLSISPAGAVRKPPIDTAP ADTADLATSLVRVLDDDGKACGPWAPAIHPERLRRGLRAMMKTRIFDARMLLAQRQKK LSFYMQCLGEEAIAVAHSMALQDGDMCFPTYRQQGLLLARDDISMVEMICQLMSNQRD PIKGRQLPVMYSYKRAGFFSISGNLATQVPQAVGWAMASAIKGDTKIASAWIGDGSTA ESDFHTALTFAHVYRAPVIINVVNNQWAISTFQAIAGGEGTTFAQRGVGVGIASLRVD GNDFLAVYAASQWAAERARSNCGPTLIEWETYRAGPHSTSDDPSKYRPADDWQRFPLG DPIERLKKHLIAIGEWSEARHEAAQKELEAEVIAAQKEAERHGSLLDGRVPSAATMFD DVYKDMPEHLRRQRQQLGV" misc_feature 662975..>663076 /locus_tag="Alide_0628" /note="2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal; Region: OxoDH_E1alpha_N; pfam12573" /db_xref="CDD:153007" misc_feature 663122..664195 /locus_tag="Alide_0628" /note="Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]; Region: AcoA; COG1071" /db_xref="CDD:31269" misc_feature 663206..664084 /locus_tag="Alide_0628" /note="Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000" /db_xref="CDD:48163" misc_feature order(663275..663277,663431..663433,663512..663517, 663608..663610,663614..663625,663632..663634, 663644..663646,663656..663658,663701..663712, 663755..663757,663770..663772,663914..663916, 663926..663928) /locus_tag="Alide_0628" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:48163" misc_feature order(663362..663367,663512..663514,663518..663520, 663602..663613,663692..663694,663698..663700, 663902..663904) /locus_tag="Alide_0628" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48163" misc_feature order(663497..663499,663503..663505,663509..663511, 663524..663526,663533..663538,663545..663550, 663554..663559,663566..663568,663623..663628, 663644..663649,663656..663658) /locus_tag="Alide_0628" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:48163" misc_feature order(663887..663907,663911..663943,663965..663973) /locus_tag="Alide_0628" /note="phosphorylation loop region [posttranslational modification]" /db_xref="CDD:48163" gene 664241..665245 /locus_tag="Alide_0629" /db_xref="GeneID:10102658" CDS 664241..665245 /locus_tag="Alide_0629" /inference="protein motif:PFAM:PF02779" /note="PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: pol:Bpro_0274 branched-chain alpha-keto acid dehydrogenase E1 component" /codon_start=1 /transl_table=11 /product="transketolase central region protein" /protein_id="YP_004125285.1" /db_xref="GI:319761348" /db_xref="GO:0003824" /db_xref="InterPro:IPR005475" /db_xref="InterPro:IPR005476" /db_xref="GeneID:10102658" /translation="MTMIQALRSGLDVMMGRDDNVVVYGEDVGYFGGVFRVTEGLQAK YGKTRCFDAPISESGIVGTAIGMAAYGLKPVVEIQFADYVYPATDQIVSEAARLRHRS AGDFSAPMVIRMPCGGGIYGGQTHSQSPEAFFTHVCGLRTVMPSNPYDAKGLLIASIE CEDPVIFLEPKRLYNGPFDGHHDKPVVPWSRHELGKVPEGYFRVPLDKAAVFRPGSAV TVLTYGTMVWVSEAAARETGVDAEIIDLRSIWPLDLETIVDSVKKTGRCVVVHEATRT SGFGAELAALVQEHCFFHLEAPIERVTGWDTPYPHAQEWAYFPGPSRVGEALKRAVEA " misc_feature 664241..665242 /locus_tag="Alide_0629" /note="Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022" /db_xref="CDD:30372" misc_feature 664253..664753 /locus_tag="Alide_0629" /note="Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036" /db_xref="CDD:132919" misc_feature order(664295..664297,664301..664303,664319..664321, 664385..664387,664394..664396,664400..664417, 664424..664429,664433..664441,664496..664498, 664505..664510,664535..664540,664604..664606, 664613..664615,664658..664663,664724..664729) /locus_tag="Alide_0629" /note="alpha subunit interface [polypeptide binding]; other site" /db_xref="CDD:132919" misc_feature order(664316..664318,664403..664405,664409..664411, 664487..664489,664496..664498) /locus_tag="Alide_0629" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132919" misc_feature order(664319..664321,664394..664396,664400..664411, 664493..664498,664502..664504,664517..664519, 664529..664531,664538..664540,664604..664606, 664610..664615,664637..664639,664643..664648, 664652..664654) /locus_tag="Alide_0629" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:132919" misc_feature 664862..665209 /locus_tag="Alide_0629" /note="Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780" /db_xref="CDD:145764" gene 665247..666554 /locus_tag="Alide_0630" /db_xref="GeneID:10102659" CDS 665247..666554 /locus_tag="Alide_0630" /inference="protein motif:PFAM:PF00198" /note="PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: bpt:Bpet3509 branched-chain alpha-keto acid dehydrogenase subunit E2" /codon_start=1 /transl_table=11 /product="catalytic domain-containing protein of components of various dehydrogenase complexes" /protein_id="YP_004125286.1" /db_xref="GI:319761349" /db_xref="GO:0005515" /db_xref="GO:0008415" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR001078" /db_xref="InterPro:IPR003016" /db_xref="InterPro:IPR004167" /db_xref="GeneID:10102659" /translation="MGIYVIRVPDIGEGIAEVELVSWHVQPGDSVTEDQHLADVMTDK ATVEVPSPMHGRVLSLGGSPGQVMAVGAELVRLEVDGEGNTSESAVHKAPEATHSVAQ AAAPTPAAPAPAAAVDAPRAAPAPAPVRNGAAPRAPAAVRKEGERPLASPAVRRRALD LGVDLRRVHGSGPAGRIEHHDLDAWAAGGGQAQAGGGSQYVERHGEEQVPVIGLRRKI AQKMQEAKRRIPHFSYVEEVDVTELEQLRQRLNQIHGAARGKLTLLPFLARAMVLALR DFPQINARYDDEAGQVTRYEAVHLGVATQTDTGLMVPVLRHAEALDLWACAAGIARVA EAARTGRAPREELSGSTITITSLGALGGIASTPVINHPEVAIVGVNRMVERPMLRGGQ VVARQLMNLSSSFDHRVVDGMDAARFIQAVRALLETPALLFVE" misc_feature 665250..666551 /locus_tag="Alide_0630" /note="branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed; Region: PRK11856" /db_xref="CDD:183339" misc_feature 665256..665477 /locus_tag="Alide_0630" /note="Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849" /db_xref="CDD:133458" misc_feature order(665346..665348,665367..665384,665394..665396) /locus_tag="Alide_0630" /note="E3 interaction surface; other site" /db_xref="CDD:133458" misc_feature 665376..665378 /locus_tag="Alide_0630" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133458" misc_feature 665682..665798 /locus_tag="Alide_0630" /note="e3 binding domain; Region: E3_binding; pfam02817" /db_xref="CDD:111687" misc_feature 665856..666548 /locus_tag="Alide_0630" /note="2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; cl02008" /db_xref="CDD:194225" gene 666562..667959 /locus_tag="Alide_0631" /db_xref="GeneID:10102660" CDS 666562..667959 /locus_tag="Alide_0631" /inference="protein motif:TFAM:TIGR01350" /note="KEGG: bch:Bcen2424_1246 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region" /codon_start=1 /transl_table=11 /product="dihydrolipoamide dehydrogenase" /protein_id="YP_004125287.1" /db_xref="GI:319761350" /db_xref="GO:0004148" /db_xref="GO:0050660" /db_xref="InterPro:IPR000815" /db_xref="InterPro:IPR004099" /db_xref="InterPro:IPR006258" /db_xref="InterPro:IPR012999" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10102660" /translation="MTKEITTKLLVIGGGPGGYVAAIRAGQLGIPTVLAEGASLGGTC LNIGCIPSKAIIHAAEEFERARHQAAGSALGIRVSDPQIDIAQTVRWKDGIVARLTGG VGTLLRKAGVQVLKGWAQIEDGKTATVQLQGGESVRVRCEHLLLATGSEPVELPSMPF GGPIWSSTDALSPDVLPKRLVVVGAGYIGLELGIAYRKLGVEVTVVEAAQRVLPSYDE ELTEPVLQALQKQGVVLHLGCSVAGWDARHGVHVRNARADEFALPAERVLVAVGRRPR TAGFGLESLQLDMAGRHVAIDAHCRTSMRGVWAIGDVTGEPMLAHRAMAQGECVAEQI AGRNRRFEPMAIPAVCFTDPEVVVVGRTPGEARAAGLDCIDAAFPFAANGRAMTLEST GGFVRVVARRDNHLILGWQAVGHGVAELAAAFGQSIEMGARLEDVGHTIHAHPTMGEA VQEAALRALGQALHI" misc_feature 666568..667956 /locus_tag="Alide_0631" /note="dihydrolipoamide dehydrogenase; Validated; Region: PRK05976" /db_xref="CDD:180333" misc_feature 667096..667299 /locus_tag="Alide_0631" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 667597..667926 /locus_tag="Alide_0631" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene 668064..669002 /locus_tag="Alide_0632" /db_xref="GeneID:10102661" CDS 668064..669002 /locus_tag="Alide_0632" /EC_number="6.1.1.14" /inference="protein motif:TFAM:TIGR00388" /note="TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: dac:Daci_1288 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase, alpha subunit" /protein_id="YP_004125288.1" /db_xref="GI:319761351" /db_xref="GO:0000166" /db_xref="GO:0004820" /db_xref="GO:0005524" /db_xref="InterPro:IPR002310" /db_xref="InterPro:IPR006194" /db_xref="GeneID:10102661" /translation="MLTFQQIILKLQSYWADQGCALLQPYDMEVGAGTSHTATFLRAI GPEPWKAAYVQPSRRPKDGRYGDNPNRLQHYYQYQVVLKPAPANILELYLGSLEALGF DLKKNDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCKPATGEITY GLERLAMYLQGVDNVYNLTWTEGLSYGDVYHQNEVEQSTYNFEHSDADFLFTAFGAHE KQAQHLMAEQLALPAYEQVLKAAHTFNLLDARGAISVTERAAYIGRIRNLARAVARSY LDSRARLGFPMAARAHADEVLAELAKVAEQQSKKAA" misc_feature 668070..668924 /locus_tag="Alide_0632" /note="glycyl-tRNA synthetase, tetrameric type, alpha subunit; Region: glyQ; TIGR00388" /db_xref="CDD:129483" misc_feature 668070..668906 /locus_tag="Alide_0632" /note="Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733" /db_xref="CDD:29812" misc_feature order(668076..668078,668088..668090,668100..668102, 668124..668129,668133..668135,668139..668150, 668196..668198,668223..668225,668235..668237, 668283..668285,668601..668603,668640..668642, 668649..668654,668673..668675,668679..668681, 668688..668690,668697..668702,668709..668714, 668721..668723,668730..668732,668742..668744, 668748..668759,668766..668768,668778..668780) /locus_tag="Alide_0632" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29812" misc_feature 668121..668144 /locus_tag="Alide_0632" /note="motif 1; other site" /db_xref="CDD:29812" misc_feature order(668157..668159,668163..668165,668238..668240, 668286..668288,668292..668294,668298..668306, 668469..668474,668484..668486,668532..668537, 668541..668546,668550..668555) /locus_tag="Alide_0632" /note="active site" /db_xref="CDD:29812" misc_feature 668235..668246 /locus_tag="Alide_0632" /note="motif 2; other site" /db_xref="CDD:29812" misc_feature 668544..668555 /locus_tag="Alide_0632" /note="motif 3; other site" /db_xref="CDD:29812" gene 669022..671187 /locus_tag="Alide_0633" /db_xref="GeneID:10102662" CDS 669022..671187 /locus_tag="Alide_0633" /EC_number="6.1.1.14" /inference="protein motif:TFAM:TIGR00211" /note="TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: ajs:Ajs_0528 glycine--tRNA ligase" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase, beta subunit" /protein_id="YP_004125289.1" /db_xref="GI:319761352" /db_xref="GO:0000166" /db_xref="GO:0004820" /db_xref="GO:0005524" /db_xref="InterPro:IPR002311" /db_xref="InterPro:IPR006194" /db_xref="InterPro:IPR008909" /db_xref="InterPro:IPR015944" /db_xref="GeneID:10102662" /translation="MTATSNLLVELFVEELPPKALQKLGDAFAGVLRDQLVAQGLAAA GAPLTAYASPRRLAAHIEGVLAQAPDKAVSQKLMPVAVGLAADGQPTPALLKKLSALG ADASAVAGLKRVHDGKAEVLYYESTAQGATLAQGLQKALDEAIARLPIPKVMRYQLED GWTSVHFVRPAHGLVALHGAGVVPVAVLGLAAGNATQGHRFEAAVQPVVLRDADSYAE QLRAQGAVIAGFAERRAEIVRQLRAAAEKLGGGVRPIEDDALLDEVTALVERPNVLVC QFEREFLAVPQECLILTMKANQKYFPLLDAEGRLTHRFLVVSNISPQDAGAVIQGNER VVRPRLADAKFFFDQDRKKTLASRVAQLSKVVYHNQLGSQGERVERVRAIAKAIGQQL FAALAERHELQGTQDGEIAQDWLLTCVDNAALLAKTDLVTDMVGEFPELQGIMGGYYA VNDGLPDEVAHAIEDHYKPRFAGDELPRESVGLVVALADKIETLVGMFGIGNLPTGDR DPFALRRHALGVIRMLMEKDLPLDLGALLAGAVPAFAGRIDDPSALLADFIYDRLAGA LREQGYSSQEVDAVLALRPQRLALVEKQLAAVRAFSALPESQALAAANKRVSNILKKA GGDVHAHVNPELLREQAEQDLYAALQRFVPEADAQFERGDYTASLQTLAVLRAPVDAF FDDVMVNAEQLDLRLNRLGLLKTLHEAMNRVADLSRLAA" misc_feature 669070..671184 /locus_tag="Alide_0633" /note="glycyl-tRNA synthetase subunit beta; Validated; Region: glyS; PRK01233" /db_xref="CDD:179258" misc_feature 669070..670773 /locus_tag="Alide_0633" /note="Glycyl-tRNA synthetase beta subunit; Region: tRNA_synt_2f; pfam02092" /db_xref="CDD:190207" misc_feature 670858..>671094 /locus_tag="Alide_0633" /note="Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020" /db_xref="CDD:196302" gene 671233..671808 /locus_tag="Alide_0634" /db_xref="GeneID:10102663" CDS 671233..671808 /locus_tag="Alide_0634" /inference="protein motif:TFAM:TIGR01656" /note="TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dia:Dtpsy_0545 histidinol-phosphate phosphatase family protein" /codon_start=1 /transl_table=11 /product="histidinol-phosphate phosphatase family protein" /protein_id="YP_004125290.1" /db_xref="GI:319761353" /db_xref="GO:0004401" /db_xref="InterPro:IPR006543" /db_xref="InterPro:IPR006549" /db_xref="GeneID:10102663" /translation="MKLAILDRDGTLNALGDGFIASPDDWVPLPGALEAVARLNHAGW HVVLATNQPGLGRGLFDAQTLVDIHAKMHRQLAALGGRIDAVFYCPHAEGEACNCRKP APGLMEQICERYGVEGDEILVAGSCLAHLQAAADLGAQLHMVCTGRSAHLDPRQPLPP GWPPGTRAHASLGALVDFVAPQDGAALPVVA" misc_feature 671239..671607 /locus_tag="Alide_0634" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature order(671251..671259,671380..671385) /locus_tag="Alide_0634" /note="active site" /db_xref="CDD:119389" misc_feature 671251..671268 /locus_tag="Alide_0634" /note="motif I; other site" /db_xref="CDD:119389" misc_feature 671380..671382 /locus_tag="Alide_0634" /note="motif II; other site" /db_xref="CDD:119389" gene 672059..672802 /locus_tag="Alide_0635" /db_xref="GeneID:10102664" CDS 672059..672802 /locus_tag="Alide_0635" /inference="protein motif:PFAM:PF01553" /note="KEGG: ajs:Ajs_0530 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase" /codon_start=1 /transl_table=11 /product="phospholipid/glycerol acyltransferase" /protein_id="YP_004125291.1" /db_xref="GI:319761354" /db_xref="GO:0008415" /db_xref="InterPro:IPR002123" /db_xref="GeneID:10102664" /translation="MALIRSLVHLLVMAVTVIPYTLAILLVRVLGGSPAARYRVARAW LALCVDSARWLLGIRTHIMGMEHLPQDPKQGVVLLVKHQSTYETFLMPAIMPHPLAYV FKKELLRIPFFGWSIGSLDMIHIDRKHGSRAFHKVVEQGKRLLAQGTWVIMFPEGTRV ARGQAGEYKSGATRLAIMAGVPVVPIAVTSARCWPRKALVKHPGVVEVSIGKPIPTTG RKHEELMAEVETWIESEMRRLDPEAYPAA" misc_feature 672077..672793 /locus_tag="Alide_0635" /note="1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204" /db_xref="CDD:30553" misc_feature 672218..672745 /locus_tag="Alide_0635" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989" /db_xref="CDD:153251" misc_feature order(672302..672304,672311..672313,672317..672319, 672365..672376,672527..672535) /locus_tag="Alide_0635" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153251" gene 672805..673608 /locus_tag="Alide_0636" /db_xref="GeneID:10102665" CDS 672805..673608 /locus_tag="Alide_0636" /inference="protein motif:PFAM:PF01863" /note="PFAM: protein of unknown function DUF45; KEGG: dia:Dtpsy_0547 protein of unknown function DUF45" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125292.1" /db_xref="GI:319761355" /db_xref="InterPro:IPR002725" /db_xref="GeneID:10102665" /translation="MRPFVQLALDLLGGGVPAAPAHAPRAPDTKRQLRLGDAVVPYTL QRARRRSIGFTVGPDGLAVRAPAWVTLAAVDAALQDKAGWILRKLGEQQARRRQQEAA RIAWGPGAVLPYLGEPLTVVLAHGRAARGGMLVQDARELHLPLAHGAGPGQVRDAVQA WLMRDARRCFTERLDHFAPLLGVRWTQLRLSSARTRWGSARTGGSISLNWRLMHYRPA IIDYVVAHELSHLRVMDHSPRFWSVVESVVPDHAALRRSLRELPAPPWD" misc_feature 672952..673584 /locus_tag="Alide_0636" /note="Protein of unknown function DUF45; Region: DUF45; cl00636" /db_xref="CDD:153902" gene 673669..674103 /locus_tag="Alide_0637" /db_xref="GeneID:10102666" CDS 673669..674103 /locus_tag="Alide_0637" /inference="protein motif:SMART:SM00450" /note="SMART: Rhodanese domain protein; KEGG: ajs:Ajs_0532 rhodanese domain-containing protein" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="YP_004125293.1" /db_xref="GI:319761356" /db_xref="InterPro:IPR001763" /db_xref="GeneID:10102666" /translation="MSTHTVSPTDQPLPAEGYAGDVSPQLAWQWVRAGHAVLVDVRSD AERDWVGFVPGAVAVAWKQWPGMVPNPDFDAQIRAAVPPGARAVLLCRSGVRSVDAAR RATALGITAYNVLEGFEGSLDENGQRNHRGGWRFRGLPWRQG" misc_feature 673732..674076 /locus_tag="Alide_0637" /note="Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins; Region: RHOD_1; cd01522" /db_xref="CDD:29085" misc_feature 673939..673941 /locus_tag="Alide_0637" /note="active site residue [active]" /db_xref="CDD:29085" gene complement(674108..674596) /locus_tag="Alide_0638" /db_xref="GeneID:10102667" CDS complement(674108..674596) /locus_tag="Alide_0638" /inference="protein motif:PFAM:PF01476" /note="KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; transport-associated; SMART: Peptidoglycan-binding LysM" /codon_start=1 /transl_table=11 /product="peptidoglycan-binding lysin domain protein" /protein_id="YP_004125294.1" /db_xref="GI:319761357" /db_xref="InterPro:IPR002482" /db_xref="InterPro:IPR007055" /db_xref="InterPro:IPR018392" /db_xref="GeneID:10102667" /translation="MGLFTFIKEAGEKLFGGSPAQAASAAAPTQAELNARAGKAIETY IATQNLGVSGLQVAFEGPEGKVTVTGTAPTQAAKEKVTLCCGNVASVTSVDNQMTVAN PEPEAQYHDVVRGDTLSAIAKKFYGDASKYPVIFEANKPMLSHPDKIYPGQKLRIPPL PR" misc_feature complement(674120..674596) /locus_tag="Alide_0638" /note="LysM domain/BON superfamily protein; Provisional; Region: PRK11198" /db_xref="CDD:183034" misc_feature complement(674291..674482) /locus_tag="Alide_0638" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" misc_feature complement(674123..674275) /locus_tag="Alide_0638" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature complement(order(674225..674227,674234..674236, 674249..674251,674258..674260,674267..674269)) /locus_tag="Alide_0638" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" gene 674743..675519 /locus_tag="Alide_0639" /db_xref="GeneID:10102668" CDS 674743..675519 /locus_tag="Alide_0639" /inference="protein motif:TFAM:TIGR00671" /note="KEGG: dia:Dtpsy_0550 pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor" /codon_start=1 /transl_table=11 /product="transcriptional activator, baf family" /protein_id="YP_004125295.1" /db_xref="GI:319761358" /db_xref="GO:0016563" /db_xref="InterPro:IPR004619" /db_xref="GeneID:10102668" /translation="MTFLAIDVGNSRLKWALYDAARPGTAMLAHGVEFLDHIERLSEG PWAGLPAPTHMLGCVVAGDAIKRRVVEQMELWDVPAHWVVPSQEEAGVVNGYDYPTRL GADRWVAMIGARHRLLAQGPARPLILAMVGTAVTVEALDTSGRFLGGLIVPGHGIMLR ALESGTAGLHVPTGEVRLFPSNTSDALTSGGTYAIAGAVERMYQHLLQHCGQEPVCMM TGGAGWKMAPSMTRPFELVENLIFDGLLEIASRRLAAAAA" misc_feature 674743..675498 /locus_tag="Alide_0639" /note="Bordetella pertussis Bvg accessory factor family; Region: Bvg_acc_factor; cl09130" /db_xref="CDD:195799" gene complement(675516..676193) /locus_tag="Alide_0640" /db_xref="GeneID:10102669" CDS complement(675516..676193) /locus_tag="Alide_0640" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_0551 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="regulatory protein tetr" /protein_id="YP_004125296.1" /db_xref="GI:319761359" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10102669" /translation="MARKAPRRTAERILEASLALFNRFGEPHVSTASIAAELGISSGN LYYHYRAKDEIVNALFAQYDEALGGLLQAGGDAADVEDAWFFMHRLFELLWQYRFLYR DLNNLLSRNRLLETQFPGVLQAKVAAMRALLAAMRRGGALRMDHEDDLQATATCMVVV LTYWLCFEYVGDPRRALEPESAQAALLRGARHVLGLLMPYLEPEQRAHLARLVQAYET SDGAGEG" misc_feature complement(676017..676157) /locus_tag="Alide_0640" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(676351..676794) /locus_tag="Alide_0641" /db_xref="GeneID:10102670" CDS complement(676351..676794) /locus_tag="Alide_0641" /inference="protein motif:TFAM:TIGR01837" /note="KEGG: dia:Dtpsy_0552 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein" /codon_start=1 /transl_table=11 /product="poly(hydroxyalkanoate) granule-associated protein" /protein_id="YP_004125297.1" /db_xref="GI:319761360" /db_xref="InterPro:IPR008769" /db_xref="GeneID:10102670" /translation="MPRPPRDDDAPNPAHELPRMARESAQQIWLAGLGAFAKAQEEGG KVFEALVREGLALQRKTQSAAEEHLGEAAQRMSHLASDLGERAAGQWDRLEGIFEQRV AKALQRLGMPTAQDMQALQERVHALEEELRRLQGRRKADAADDED" misc_feature complement(676423..676749) /locus_tag="Alide_0641" /note="Poly(hydroxyalcanoate) granule associated protein (phasin); Region: Phasin; cl07863" /db_xref="CDD:195632" gene 676993..678054 /locus_tag="Alide_0642" /db_xref="GeneID:10102671" CDS 676993..678054 /locus_tag="Alide_0642" /inference="protein motif:TFAM:TIGR01181" /note="KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="dtdp-glucose 4,6-dehydratase" /protein_id="YP_004125298.1" /db_xref="GI:319761361" /db_xref="GO:0008460" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR005888" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10102671" /translation="MILVTGGAGFIGANFVLDWLAGSDEPVVNLDKLTYAGNLHNLDG LSGDARHLFVQGDIGDGALVSRLLAGHRPRAIVNFAAESHVDRSIHGPEDFIQTNVVG TFRLLEVVRHYWQALSATEKEAFRFLHVSTDEVYGTLAPSAPAFTEAHGYEPNSPYSA SKAASDHLVRAWHHTYGLPVLTTNCSNNYGPLHFPEKLIPLMIVNALAGKSLPVYGDG MQVRDWLYVKDHCSAIRRVLEAGRLGETYNVGGWNEKPNIEIVKTVCALLDELRPRAD GQSYATQITYVQDRPGHDRRYAIDARKIERELAWRPAETFETGIRKTVQWYLDNPQWV QQVQSGAYRDWVAKQYASA" misc_feature 676996..678045 /locus_tag="Alide_0642" /note="dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]; Region: RfbB; COG1088" /db_xref="CDD:31285" misc_feature 676996..677985 /locus_tag="Alide_0642" /note="dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: dTDP_GD_SDR_e; cd05246" /db_xref="CDD:187557" misc_feature order(677008..677010,677014..677025,677083..677094, 677098..677103,677158..677166,677227..677235, 677239..677241,677284..677286,677380..677388, 677464..677466,677476..677478,677545..677556) /locus_tag="Alide_0642" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187557" misc_feature order(677239..677247,677386..677394,677464..677466, 677545..677553,677578..677586,677593..677598, 677629..677637,677650..677652,677656..677658, 677761..677763,677860..677862,677869..677871, 677881..677883) /locus_tag="Alide_0642" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187557" misc_feature order(677251..677253,677257..677259,677266..677271, 677278..677280,677290..677295,677302..677304, 677314..677316,677323..677325,677404..677406, 677437..677439,677443..677448,677452..677463, 677470..677472,677479..677484,677491..677496, 677503..677508,677512..677520,677872..677874) /locus_tag="Alide_0642" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187557" misc_feature order(677287..677289,677386..677388,677464..677466, 677476..677478) /locus_tag="Alide_0642" /note="active site" /db_xref="CDD:187557" gene 678051..678929 /locus_tag="Alide_0643" /db_xref="GeneID:10102672" CDS 678051..678929 /locus_tag="Alide_0643" /EC_number="1.1.1.133" /inference="protein motif:TFAM:TIGR01214" /note="TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: ajs:Ajs_0538 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase" /codon_start=1 /transl_table=11 /product="dtdp-4-dehydrorhamnose reductase" /protein_id="YP_004125299.1" /db_xref="GI:319761362" /db_xref="GO:0008831" /db_xref="InterPro:IPR005913" /db_xref="GeneID:10102672" /translation="MNILLLGKNGQVGWELQRSLAVLGEVTALGHDEADFTQPQAVAQ AVRALCPDVIVNAAAHTAVDKAESEPERARLLNATTPGVLAEEAVRLGAWLVHYSTDY VFDGSGSRPWRETDAPAPLSVYGATKLEGERLIQQSGCRHLILRTSWVYAARGGNFAK TMLRLAQERERLTVIDDQWGAPTGADLLADVTAHAIRHLQQRPQDGGLYHCVAGGETT WHSYAKYVVEHARQAQSAINIIAKEIAPVPTSAFLTPARRPHNSRLDNAKLQAAFGLR LPPWQQGVARMLTEIL" misc_feature 678051..678926 /locus_tag="Alide_0643" /note="dTDP-4-dehydrorhamnose reductase; Provisional; Region: PRK09987" /db_xref="CDD:182184" misc_feature 678054..678905 /locus_tag="Alide_0643" /note="dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs; Region: dTDP_HR_like_SDR_e; cd05254" /db_xref="CDD:187564" misc_feature order(678069..678071,678075..678086,678138..678143, 678153..678161,678219..678227,678231..678233, 678276..678278,678342..678350,678420..678422, 678432..678434,678489..678500) /locus_tag="Alide_0643" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187564" misc_feature order(678279..678281,678348..678350,678420..678422, 678432..678434) /locus_tag="Alide_0643" /note="active site" /db_xref="CDD:187564" misc_feature order(678348..678350,678420..678422,678495..678497, 678534..678536,678570..678572,678588..678590) /locus_tag="Alide_0643" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187564" gene 678940..679830 /locus_tag="Alide_0644" /db_xref="GeneID:10102673" CDS 678940..679830 /locus_tag="Alide_0644" /inference="protein motif:TFAM:TIGR01207" /note="KEGG: bvi:Bcep1808_3215 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate thymidylyltransferase" /protein_id="YP_004125300.1" /db_xref="GI:319761363" /db_xref="GO:0008879" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR005907" /db_xref="GeneID:10102673" /translation="MTAPTRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMVYYPLS TLMLAGIRDILLISTPQDTPRFEQLLGDGGQWGVNLQYAVQPSPDGLAQAFLIGERFL AGSPSALVLGDNIFYGHDLQPLLQTANARTSGATVFAYHVQDPERYGVVAFDAAGKAT SIEEKPQAPQSNYAVTGLYFYDGQVVDIAKAVKPSARGELEITSVNQAYLEQGRLTVQ TMGRGYAWLDTGTHESLLDASQFIATLENRQGLKVACPEEIAWRSGWIDAAQLEKLAQ PLAKNRYGQYLLQLLRHKVF" misc_feature 678955..679674 /locus_tag="Alide_0644" /note="G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; Region: G1P_TT_short; cd02538" /db_xref="CDD:133019" misc_feature 678958..679815 /locus_tag="Alide_0644" /note="glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207" /db_xref="CDD:130274" misc_feature order(678970..678972,678976..678981,679192..679194, 679201..679212,679276..679278,679384..679386, 679429..679434,679462..679464,679546..679548) /locus_tag="Alide_0644" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133019" misc_feature order(678988..678990,678997..679005,679012..679017, 679027..679035,679039..679050,679057..679059, 679132..679134,679288..679293,679357..679368, 679378..679383,679615..679623,679633..679638, 679645..679647,679654..679662,679669..679674) /locus_tag="Alide_0644" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:133019" gene 679830..680375 /locus_tag="Alide_0645" /db_xref="GeneID:10102674" CDS 679830..680375 /locus_tag="Alide_0645" /EC_number="5.1.3.13" /inference="protein motif:TFAM:TIGR01221" /note="TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: dia:Dtpsy_0556 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related" /codon_start=1 /transl_table=11 /product="dtdp-4-dehydrorhamnose 3,5-epimerase" /protein_id="YP_004125301.1" /db_xref="GI:319761364" /db_xref="GO:0008830" /db_xref="InterPro:IPR000888" /db_xref="GeneID:10102674" /translation="MKATPLAIPDVVLIEPKVFGDARGFFFESFNQKAFDEATGTHFQ FVQDNHSRSGRGVLRGLHYQVQQPQGKLVRVVRGAVWDVAVDIRRNSPTFGRWVGAEL SEDNQRQLWVPPGFAHGFVVLSESADFLYKTTDYYAPQHERCIAWNDAQLAIAWPYAG EPVLSAKDQAGKPLAEAELCM" misc_feature 679833..680363 /locus_tag="Alide_0645" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 680366..681547 /locus_tag="Alide_0646" /db_xref="GeneID:10102675" CDS 680366..681547 /locus_tag="Alide_0646" /inference="protein motif:PFAM:PF09314" /note="PFAM: protein of unknown function DUF1972; glycosyl transferase group 1; KEGG: gme:Gmet_2169 glycosyltransferase-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125302.1" /db_xref="GI:319761365" /db_xref="InterPro:IPR001296" /db_xref="InterPro:IPR015393" /db_xref="GeneID:10102675" /translation="MHVSAAPAAGGQAGRALRVALLGTRGIPAGYGGFETFAQQLAVR LVRRGHQVTVYAEADRQGLPDTWYEGVRIRHVQRPRWGAASVIGYDCRCLRDARQGYD LLYMLGYGAAWACWWNRRILGQKVWLNVDGLEWARSKWGHLARVYLRAMEWVSSRAPT RVLADAQAIADRYARLYPRGVPCSFIAYGAELPAVSSRAAHDLSRWNLRTGEYVLVVA RPEPENHVLEIVEGHARWGGDWPLVVVGDVRPVTPYQKRLLALAGDKVRFIGGVYDAG LLTGLRMGAGCHVHGHSVGGTNPSLLEALACGNVVVAHDNPFNREVARDAAHYFQTSQ QLAEALERVRALTASARQAVAARARGIVAQHYTWDSIAAQYENLMHAECAGIAAGALH R" misc_feature 680444..681502 /locus_tag="Alide_0646" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" misc_feature 680447..681499 /locus_tag="Alide_0646" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" gene 681544..682455 /locus_tag="Alide_0647" /db_xref="GeneID:10102676" CDS 681544..682455 /locus_tag="Alide_0647" /inference="protein motif:TFAM:TIGR01556" /note="KEGG: ajs:Ajs_0541 rhamnosyltransferase; TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="rhamnosyltransferase" /protein_id="YP_004125303.1" /db_xref="GI:319761366" /db_xref="InterPro:IPR001173" /db_xref="InterPro:IPR006446" /db_xref="GeneID:10102676" /translation="MSAASCVHAVVVSYRSDPQRLARQFDRLLEQVSAIVWVDNASGD GLRALASRWPAERLHAIWLGDNQGIGAAQNRGMERALALGASHVLLMDDDSLPAPDMV PRLLAALAAHPQAAAVGACHVDPRRETGRTPFSVVAGGRLRWLECSDARQVWEVDHVI ASGCLIPAPVLQAVGGMREDFFIDWVDTEWCLRARDGGYRIYGVCAALLEHTLGDRVV RVLGREIPWHAPWRHYYQARNFVLMLRSRQMGHVSKSHMTFRQLKRFIVFSTLVPGRW QYFKMWLRGLLHGCQGRSGLVVPPGSR" misc_feature 681583..682275 /locus_tag="Alide_0647" /note="RfbF is a putative dTDP-rhamnosyl transferase; Region: GT2_RfbF_like; cd02526" /db_xref="CDD:133017" misc_feature order(681583..681585,681823..681825) /locus_tag="Alide_0647" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133017" misc_feature 681595..682431 /locus_tag="Alide_0647" /note="Predicted glycosyltransferases [General function prediction only]; Region: COG1216" /db_xref="CDD:31409" gene 682463..684166 /locus_tag="Alide_0648" /db_xref="GeneID:10102677" CDS 682463..684166 /locus_tag="Alide_0648" /inference="protein motif:PFAM:PF00437" /note="PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: vei:Veis_0688 general secretory pathway protein E" /codon_start=1 /transl_table=11 /product="type ii secretion system protein e" /protein_id="YP_004125304.1" /db_xref="GI:319761367" /db_xref="GO:0005524" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR007831" /db_xref="GeneID:10102677" /translation="MNNDDMNAQEPRQKLGEILLAGQKLSRNDLERALEVQRSMGGRL GRLLLSLGLVSEADVCAALAYQAGLPLVRQEAFPQDRPELGQLNTSFLLSNHVLPLGP VDGQAPLPDFVAADPQDPAMQAALRLVFGQVPGLAFGLESEVAARLQQWFVQDELPPE EQEGQAYGASEFIEHLRDMASEAPIIQRVNQILAQAVSAKASDIHIETYEEKSVVRIR VDGEIFPIDDIDNKDAPAIVSRIKILSQLDIAERRMPQDGRTKIRVHGKEMDVRVSTV PTAFGESVVMRLLEKNFDLLSLQSLHFTPPTLAAMRQLLAVPHGILLVTGPTGSGKST TLYASMQELEGQNLKILTVEDPVEYRLPWLNQVQVQPQIGLTFAQVLRAFLRQDPDVI MIGEMRDGETAEIAVQAALTGHLVLSTLHTNSAMGAIVRLINMGVEPYLITASVVGVL AQRLVRQLCGDCKQPLSAEQARAAAASLGVAPTGEATLYKPVGCASCRNTGYRGRVAI HELLRLTDEVKQQVLERGTAVHGAQGAYVGGNLLQDGATKVFSGLTTAEEVLRVARQH D" misc_feature 682622..682930 /locus_tag="Alide_0648" /note="GSPII_E N-terminal domain; Region: GSPII_E_N; pfam05157" /db_xref="CDD:191212" misc_feature 682718..684148 /locus_tag="Alide_0648" /note="general secretory pathway protein E; Region: type_II_gspE; TIGR02533" /db_xref="CDD:131585" misc_feature 683180..683977 /locus_tag="Alide_0648" /note="PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129" /db_xref="CDD:29995" misc_feature 683438..683461 /locus_tag="Alide_0648" /note="Walker A motif; other site" /db_xref="CDD:29995" misc_feature order(683441..683443,683453..683461,683516..683518, 683522..683527,683645..683650) /locus_tag="Alide_0648" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29995" misc_feature 683633..683650 /locus_tag="Alide_0648" /note="Walker B motif; other site" /db_xref="CDD:29995" gene 684159..685370 /locus_tag="Alide_0649" /db_xref="GeneID:10102678" CDS 684159..685370 /locus_tag="Alide_0649" /inference="protein motif:PFAM:PF00482" /note="PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F" /codon_start=1 /transl_table=11 /product="type ii secretion system f domain protein" /protein_id="YP_004125305.1" /db_xref="GI:319761368" /db_xref="InterPro:IPR003004" /db_xref="InterPro:IPR018076" /db_xref="GeneID:10102678" /translation="MIEFHYAGTLADGKPCQGSIRASDAQAARLRLLGQGITPVRLQG GEAAASPGGAGERPAVRLKRSDVLLFTREMAHLKQANMPLDKALVMLRETAGNERIKV FLANVQEEVRGGKSLYQSLQPFERDLGRQYLVLIRAGEASGSLHTILQELTTQLEADD KLRNYIISSMTYPAILLVVAVLSVILLLAFVVPQFRQIFDSMGDALPYSTQLVLQASD FVRGHWMALLLGLAVTVLLLSRWADTATGRRRIDAAVLSLPLMGKVLRNLQFALYFRT FGVLLQRGVPLVDALRIAIDTLTNQALRQDMEPLVAVVKTGQRLSSGLDSPHFAGTST PQLIRVAEETGQLGSTVLSLAARYEDEGRRTMGRVLATMEPLIIIVLGALVAFIIVAI LGGVLSINDTI" misc_feature 684159..685367 /locus_tag="Alide_0649" /note="Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulF; COG1459" /db_xref="CDD:31648" misc_feature 684366..684677 /locus_tag="Alide_0649" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" misc_feature 684975..685337 /locus_tag="Alide_0649" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene 685397..685837 /locus_tag="Alide_0650" /db_xref="GeneID:10102679" CDS 685397..685837 /locus_tag="Alide_0650" /inference="protein motif:TFAM:TIGR01710" /note="KEGG: aav:Aave_4158 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G" /codon_start=1 /transl_table=11 /product="general secretion pathway protein g" /protein_id="YP_004125306.1" /db_xref="GI:319761369" /db_xref="GO:0008565" /db_xref="InterPro:IPR000983" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR010054" /db_xref="InterPro:IPR012902" /db_xref="InterPro:IPR013545" /db_xref="GeneID:10102679" /translation="MHFATTLRTPLQARRARGFTLIELLVVLVILTLLAGLVGPRVLD QLGGAKAKTARVQIGEMEQAVDLFKLDVGRYPNDAEGLRALVERPATVQGWNGPYLKK GLPVDPWGAAYQYKFPGRHGGPDIFSLGADGKPGGESDNADIYN" misc_feature 685523..685834 /locus_tag="Alide_0650" /note="Bacterial type II secretion system protein G; Region: GSPII_G; pfam08334" /db_xref="CDD:192005" gene 685867..686349 /locus_tag="Alide_0651" /db_xref="GeneID:10102680" CDS 685867..686349 /locus_tag="Alide_0651" /inference="similar to AA sequence:KEGG:Daci_1302" /note="KEGG: dac:Daci_1302 general secretion pathway protein H" /codon_start=1 /transl_table=11 /product="general secretion pathway protein h" /protein_id="YP_004125307.1" /db_xref="GI:319761370" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10102680" /translation="MRLRTPRPWGRHRGFTLLELLVVLVLAGIAVAVVGGSAQAYMER ARYHQTVRDLASQLGRARALCVQQGRQIVVFYAPQNRQLSIDGQVVLDIPASLAVRWE GLAQAPQQQNAAGQPVFVFNAEGGARGGQIQVSRGAQGVLFSVNWLLGTVQQTVVAVP " sig_peptide 685867..685989 /locus_tag="Alide_0651" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.899 at residue 41" gene 686346..686747 /locus_tag="Alide_0652" /db_xref="GeneID:10102681" CDS 686346..686747 /locus_tag="Alide_0652" /inference="similar to AA sequence:KEGG:Veis_0684" /note="KEGG: vei:Veis_0684 general secretion pathway protein I" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125308.1" /db_xref="GI:319761371" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10102681" /translation="MNTRRARGLRGFSLLEALVAMAIASIAFAVLYRTVGQSSLNATT VESRAEAALVARSVLASATFAEDLVQHPEGQSGPWQWSVQVQPEQVAVHAPGARQAPP PLQAARVELTIARDGRAVLAWTSWKPYRAAP" sig_peptide 686346..686435 /locus_tag="Alide_0652" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.915) with cleavage site probability 0.847 at residue 30" misc_feature 686373..>686423 /locus_tag="Alide_0652" /note="hypothetical protein; Provisional; Region: PRK10557" /db_xref="CDD:182546" gene 686744..687355 /locus_tag="Alide_0653" /db_xref="GeneID:10102682" CDS 686744..687355 /locus_tag="Alide_0653" /inference="similar to AA sequence:KEGG:Veis_0683" /note="KEGG: vei:Veis_0683 general secretion pathway protein J" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125309.1" /db_xref="GI:319761372" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10102682" /translation="MTRPTPSRQRGFTLLELLIALAVTTAVVGLVFAGFGVIGRSQER SQQLVDRSERMLQVGQWLGRKFDTLRLLSHGQDGRFVLFFSGSAAGALWVSPLPERGD AGGLYVLRASPLRHDDGRVDLAIEALPYDGALMALDWARAEREILLPDVRTLQWYYQD GATGQWLQQWDAGRAGYPVRIRLALGDARGDWPELVFALARAQ" sig_peptide 686744..686845 /locus_tag="Alide_0653" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.690) with cleavage site probability 0.653 at residue 34" misc_feature 686870..687349 /locus_tag="Alide_0653" /note="general secretion pathway protein J; Validated; Region: PRK08808" /db_xref="CDD:181557" gene 687352..688263 /locus_tag="Alide_0654" /db_xref="GeneID:10102683" CDS 687352..688263 /locus_tag="Alide_0654" /inference="similar to AA sequence:KEGG:ebA1612" /note="KEGG: eba:ebA1612 general secretory pathway protein K" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125310.1" /db_xref="GI:319761373" /db_xref="GeneID:10102683" /translation="MKRCASAQRGAALVLVLWLVAALSLTVLAGARGIRQQTQRAAFD LERLRIEPVLDAARQLAVQSLLKEGGQARGYRAWQLQLGPYGVELEIIPSGGLVDVNV ASDALLLALLQKVGGLTPGEAAIMASRIRDYIDPDDQPGGIGGAEAPQYRAAGWPVLP RNGPVDDLSELRMVLGMSPELYEIISPYLGINGQQRIEIDAAPPALIDALTDQPGLGA QIQSSPPEMRAGALLSGAAAQIFATARAGGGTVKVRAMVQTDQGHWWQREAWVDLSTR PDSLTPWTTLSLEPTRRMNPPPQEIHP" sig_peptide 687352..687441 /locus_tag="Alide_0654" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.975 at residue 30" misc_feature <687700..688137 /locus_tag="Alide_0654" /note="General secretion pathway protein K; Region: GspK; pfam03934" /db_xref="CDD:146520" gene 688260..689273 /locus_tag="Alide_0655" /db_xref="GeneID:10102684" CDS 688260..689273 /locus_tag="Alide_0655" /inference="protein motif:PFAM:PF05137" /note="PFAM: Fimbrial assembly family protein; KEGG: aav:Aave_4153 fimbrial assembly family protein" /codon_start=1 /transl_table=11 /product="fimbrial assembly family protein" /protein_id="YP_004125311.1" /db_xref="GI:319761374" /db_xref="InterPro:IPR007813" /db_xref="GeneID:10102684" /translation="MTAREQFNRRLEAVFDRLAWGFGDARRMLVERGLWPAAAPVLAA PDGARFCVAATRLRPAGGKRRPQGLLVPEGDSLWGSLQLPDMPRRQLGPAVQEALWRV SPLPPDQIWCAWRATPQAQGGWSVEWGACRRDQQGAALSHLGLPADASLYLARAGHAL PVHGAGWPAQQRRQRWLDALALLGVLLLAAALAVPALMPLALKRQAVVRAVEHVNELE PKAAPLRPQLDELRQQASVAESLRQAAASADLPLASVIEALSEALPDDSWLERVEISG NDIRITGVAGNAGDLAARLGRHGGFVEVRASAASVRDNALGKERFTFEMRWRPPQAEG GKP" misc_feature 689022..689240 /locus_tag="Alide_0655" /note="Fimbrial assembly protein (PilN); Region: PilN; pfam05137" /db_xref="CDD:191205" gene 689270..689818 /locus_tag="Alide_0656" /db_xref="GeneID:10102685" CDS 689270..689818 /locus_tag="Alide_0656" /inference="protein motif:PFAM:PF10741" /note="PFAM: General secretion pathway protein M; KEGG: vei:Veis_0680 general secretion pathway protein M" /codon_start=1 /transl_table=11 /product="general secretion pathway protein m" /protein_id="YP_004125312.1" /db_xref="GI:319761375" /db_xref="InterPro:IPR019677" /db_xref="GeneID:10102685" /translation="MNVWTRRALVTALLCVLALLAGAGLAYNALWSRYDSGLSLLESR SERIDGLVGAGPDIASRLESARQTVAPWLHPAGENAANDAQQRLRELINASGNTLVSS QVALEPGAEGRLASVRLTATLTGDWPRLVRFMQDLQARTPPFWVRSASLAREGANTSG AAQTARLTLQLAAPLAPEKGQP" sig_peptide 689270..689350 /locus_tag="Alide_0656" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.721 at residue 27" misc_feature 689507..>689722 /locus_tag="Alide_0656" /note="General secretion pathway protein M; Region: GspM_II; pfam10741" /db_xref="CDD:151222" gene 689815..690300 /locus_tag="Alide_0657" /db_xref="GeneID:10102686" CDS 689815..690300 /locus_tag="Alide_0657" /inference="similar to AA sequence:KEGG:FG01491.1" /note="KEGG: fgr:FG01491.1 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125313.1" /db_xref="GI:319761376" /db_xref="GeneID:10102686" /translation="MIRPWHFTPLLAGAALAAGAYWWLAEKDLWQPPPARTPELPQLA PLQQPVRSTVREALARPPLWALRRPVEADGKKGGMEQEINQSRLTAVFESGRQRIALL QRPDGSPLKLTSDTKPWRLESFDGRKALFVSEDGAQRVERPLEAGSGAPKRARTAAGR P" sig_peptide 689815..689877 /locus_tag="Alide_0657" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.771) with cleavage site probability 0.645 at residue 21" gene 690474..692777 /locus_tag="Alide_0658" /db_xref="GeneID:10102687" CDS 690474..692777 /locus_tag="Alide_0658" /inference="protein motif:TFAM:TIGR02517" /note="KEGG: eba:ebA1602 general (type II) secretion pathway (GSP) D protein; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein" /codon_start=1 /transl_table=11 /product="general secretion pathway protein d" /protein_id="YP_004125314.1" /db_xref="GI:319761377" /db_xref="GO:0008565" /db_xref="InterPro:IPR001775" /db_xref="InterPro:IPR004846" /db_xref="InterPro:IPR005644" /db_xref="InterPro:IPR013356" /db_xref="GeneID:10102687" /translation="MVSQGQGDQADNADQTGKPEPASQAKAASTGTKLYPGNDQLFKR DLAPPKDPVLARGDRVSLNFENVSVAGLAQALLGDLLKLNYTVDAGGDTVVSLRTSQP LLRSQVLDVLDTVLLPHDLAIVRDNVGVYHVTKRAVTVGARPVVGASKFKDLAGSGTV IVPLNHIAAAEMAKILAPLAPREAIVYVDSLRNLLVLQGSKAQLAGWLEMVEAFDVDF LAGMSLGVFVLENANVNVVRDALQAMLGAGGDKAADPYGGSAGAASAPASGAAGATTG GGSPGAGAQAAAAGSPASGAGPLNGLIRVFPVERLNALVVVTPRSHLLPQVESWIRRL DRPTDTLEPHLFVYPVQNGSAVHLAEMLNGLFGGGGAAAARPGVAAGSAPAQFAAATS AQGTQPSMATSMTSTASTGMAQTGGLTGSGLGASQGTLARPGGAAATGPQLSTVSQLE GNVRVVADDKRNALLIRAPRAEYRRIEQALRELDKAPTQVLIEASIVEVSLTGNLKYG VEWFIQNSLSGDRTGQALLNMNNSGSIGPQQPGFSYTILNKAGAVRATLNALAANSQL RVLSNPSVLVLDNHSATILVGKQQPIKQSTTVTTGNLVTESIVYKDTGVMLSVTPSVN AGGLVTLDINQQVTDVGDVDAATGQRSFLTRQIQSRVAVRSGDPIVLGGVMSENQSTG NSGVPGLRDVPVLGALFSTDTTTSARTELLVVLTPRALEDDDALRAASAEMRDRMRTM SLQGLLVPASAAKPPEGGAPLKPESPQ" misc_feature 690657..>691571 /locus_tag="Alide_0658" /note="general secretion pathway protein D; Region: type_II_gspD; TIGR02517" /db_xref="CDD:162900" misc_feature <691800..691940 /locus_tag="Alide_0658" /note="Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958" /db_xref="CDD:146539" misc_feature 692148..692624 /locus_tag="Alide_0658" /note="Bacterial type II and III secretion system protein; Region: Secretin; cl02829" /db_xref="CDD:164025" gene 692992..693435 /locus_tag="Alide_0659" /db_xref="GeneID:10102688" CDS 692992..693435 /locus_tag="Alide_0659" /inference="similar to AA sequence:KEGG:Daci_1310" /note="KEGG: dac:Daci_1310 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125315.1" /db_xref="GI:319761378" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102688" /translation="MKTQSLHRRRLLQALLLPAAVALAGCASTPSPQADREALLQRAR EYWELSRRNDTLNAWKYEAASRDQSMTLEGYVKRGGIVYDSVEVLGVRSLQGDEARVD VRMRYGVPLLRLKNMEADAQDQWRRIDGIWYHVLPRSSVFPGEKR" sig_peptide 692992..693096 /locus_tag="Alide_0659" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.887 at residue 35" gene 693609..694457 /locus_tag="Alide_0660" /db_xref="GeneID:10102689" CDS 693609..694457 /locus_tag="Alide_0660" /inference="similar to AA sequence:KEGG:AZC_2635" /note="KEGG: azc:AZC_2635 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125316.1" /db_xref="GI:319761379" /db_xref="GeneID:10102689" /translation="MKKFAMAAVAAAAMTVGVAHAYTAGTFSNGVVVPNVIHNGLADT TAVGLVNQSGATKAVFWTFFDQNSKHVTDGCFTMTDKDYQPFVWANESGVGLEGQRGY LVFSVGGATCADSAPGTGAIAAHAFQVTTASKDVAYTPVIDGPLTIAGGDLTTLGAAS LTAVGGAAPVGDVLNMRYYLQDGAKTNIVVWSTGDQKGSHTVNIYDDKQGRKSVNFDL AKEELDWFDPSTISGRPASYVDGFIEWNTANAATTLAGSVFSYSVIDAPAFGAVQTVL GFHKAP" sig_peptide 693609..693674 /locus_tag="Alide_0660" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.989 at residue 22" gene 694570..695670 /locus_tag="Alide_0661" /db_xref="GeneID:10102690" CDS 694570..695670 /locus_tag="Alide_0661" /inference="similar to AA sequence:KEGG:541320" /note="KEGG: dre:541320 integrin, alpha 6b" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125317.1" /db_xref="GI:319761380" /db_xref="GeneID:10102690" /translation="MKQLRVWPGRLAGVAAVLLALGCQMAPVVPAPGVARAAPKGVAP QTIHLDLPDAWGGQVLCVASDCLLGAVEHENNKLSLLRLKGRTATLLDRQSVAYHPDS AAWLSPQLLVAAVENSLSLDIFRVSDGRLARLAQVKVGFEPRDVIALPAPPGQYRMLA TPYGGREVAWVDWSEQQSQAAQVRKTTWCQTPWHPTRVSQLPQSAQGGVAVACLDDKK VVAVSEADLYDAPKVLASFTVIPRQVRPSPSGLWLYVALETGGRNARIQMQTGELQWI AGDPRGSSAVALLADDLVIWGDDQRLTLQRLDETGGVLQTRELRTSGYSTSLQLQDID GDGHQDILVLNSAGKRADVIYGPLWEQAQPRP" sig_peptide 694570..694683 /locus_tag="Alide_0661" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.878) with cleavage site probability 0.858 at residue 38" gene 695716..696597 /locus_tag="Alide_0662" /db_xref="GeneID:10102691" CDS 695716..696597 /locus_tag="Alide_0662" /inference="similar to AA sequence:KEGG:Amico_0081" /note="KEGG: aco:Amico_0081 PpiC-type peptidyl-prolyl cis-trans isomerase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125318.1" /db_xref="GI:319761381" /db_xref="InterPro:IPR000297" /db_xref="GeneID:10102691" /translation="MTSIRSIIPGIVLLAGAMVLGAAFAQEAKNPVLARLGNGETITE KDLTQYVGRRIDLKAVARNASGVTTVVQEMALARALALEGQSLGVPPRSEKGDTRFDD IYAHTIFSKISPACEAPKDEAAARDFYDKNPKAFTLPTAIRLSRVILPAAEKVDGEPA GTWLMNQVQAIGAGRQKFEDAAHRAEQAYKLDAQGDLGWVMLNEENLILRALGDANQG DIVGPVKDGDFVYLFQVAEKRPSQVVPWTEVSAVAAKRAVSYCREQARIDVQQRMFQK YGVQLDENAVRSLFEAK" sig_peptide 695716..695793 /locus_tag="Alide_0662" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.984 at residue 26" misc_feature <696277..>696528 /locus_tag="Alide_0662" /note="peptidyl-prolyl cis-trans isomerase SurA; Provisional; Region: PRK10770" /db_xref="CDD:182715" gene 696648..697319 /locus_tag="Alide_0663" /db_xref="GeneID:10102692" CDS 696648..697319 /locus_tag="Alide_0663" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: pnu:Pnuc_0320 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_004125319.1" /db_xref="GI:319761382" /db_xref="GO:0008168" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10102692" /translation="MHPSAMNNGKLFFDIYATKLAQGVVVDIGAQDVNGSLRSVCPPH LKFIGVDFVQGRGVDVVLDDPYRLPFEDASVDVVVSSSCFEHSELFWVLFLEIMRVLK SPGLFYLNAPSNGTFHRYPVDCWRFYPDSGRALVTWAQRNGVDTCVLESYVSRQDAAV WSDFVAVFLKGSEHAGLFPARITQVFKDFYNGQVLGDSKFMNPQEYPEDLQRLYAAEQ QASQA" misc_feature 696774..696974 /locus_tag="Alide_0663" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 697506..698483 /locus_tag="Alide_0664" /db_xref="GeneID:10102693" CDS 697506..698483 /locus_tag="Alide_0664" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: ter:Tery_4437 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_004125320.1" /db_xref="GI:319761383" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10102693" /translation="MMVPRASVLIPVKNGGALLGEVLDAVLAQSTPWPFEVVVVDSGS RDGSVECARQRGVRVELIPAAEFGHGRTRNYLASLSRGDFLVFITQDARPADAHWLRH LVEGCDSAPDVAGAFGPHRAHPGARHVTERELAEHFAGFGSVLSRVQLEDRERFDREV GYRQWLHFFSNNNSCLRRSVWEKLPFPDVMFAEDQTWMLSAIKAGYAKAFVPEAAVYH SHDFGVWETLQRNFDEASSFQRDFGYDMQRSLARALASAVLLARRDARWLRQAGVRGW SWLKHSAYMAGIELARTSGQFLGTRHQSLPAWLLRVISRDQALQRGRAA" misc_feature 697509..698237 /locus_tag="Alide_0664" /note="Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463" /db_xref="CDD:30811" misc_feature 697527..>697868 /locus_tag="Alide_0664" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761" /db_xref="CDD:132997" misc_feature order(697536..697538,697542..697544,697623..697625, 697770..697772,697776..697778) /locus_tag="Alide_0664" /note="active site" /db_xref="CDD:132997" gene 698630..699793 /locus_tag="Alide_0665" /db_xref="GeneID:10102694" CDS 698630..699793 /locus_tag="Alide_0665" /inference="protein motif:PFAM:PF00534" /note="PFAM: glycosyl transferase group 1; KEGG: lxx:Lxx04950 glycosyl transferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_004125321.1" /db_xref="GI:319761384" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10102694" /translation="MVRQRLKHGPGGPLKSRNVFTHYDFVRVARVQLAPQPARANTLL WFIPDFNIGSGGHQTIFRTIWHLERMGWESSIVIVSPTVHATAESARHDICEHFFPLQ ARVFIGFDGLPSSEFVIATGWQTAYPVRAVAGPVKKLYFVQDFEPSFYPTGTESVLAD NTYHFGFFGITAGGWLARKLRAEYGMLTHPISFGVDHDLYRQRPRREPHIKRVFFYAR PPTPRRAFEFGLLVLEAVSRRLPDTQFILAGWDVSDYHIPFPHLAAGVISPEELADVF SQCDAALVLSLTNLSLMPLEVMAAGCAVVSNRGDCVEWLLNDDVALLTDPTLEALSDA LCHLLQDDAARQALCRRAQEFARHQHWKASAEAFEQGLLEARKLLSVVAEEAV" misc_feature <699137..699739 /locus_tag="Alide_0665" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" gene 699864..700688 /locus_tag="Alide_0666" /db_xref="GeneID:10102695" CDS 699864..700688 /locus_tag="Alide_0666" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: mag:amb1063 ABC-type polysaccharide/polyol phosphate export systems" /codon_start=1 /transl_table=11 /product="abc-2 type transporter" /protein_id="YP_004125322.1" /db_xref="GI:319761385" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="GeneID:10102695" /translation="MGVSVNRPGALQQASSGRAQHAWVLWRYWMLREFKTRYAGSVLG LSWAFVQPLATLAIFYVLFGMVLAVRVPGLDLANGYLLHLLAGLAVWLPFTDAIGRGV GCLAAYEDFLRKQPMPAEILPAVAVGGSLLVMAIGYALFLVLSLTQGAPLRATWAWLP LLVLAQVALTFGLTLLLSMAHFLWRDVGSIVAFALQLWFYLTPVVYPLAQVPERFHVW YLLNPVACLVLAVEWAALGMAMPGGTLWALLAWTLLLGGGGWWFFRSMKAALGEAL" misc_feature 699930..700586 /locus_tag="Alide_0666" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene 700688..701908 /locus_tag="Alide_0667" /db_xref="GeneID:10102696" CDS 700688..701908 /locus_tag="Alide_0667" /inference="protein motif:PFAM:PF00005" /note="KEGG: vei:Veis_0673 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125323.1" /db_xref="GI:319761386" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102696" /translation="MAIAFKNIEKHYAVYARPQDRLWEWVTGRQRHRVHVALAGIDFE VRPGETFGLIGENGAGKSTLLKIAAGTIRPTRGEVMRQGRVAALLELGAGFHPEESGQ DNIRFMAALHGLEGEALEDFAARATEFSELSAETLQRPVKTYSSGMFMRLAFAAATAI EPEVLIVDEALSVGDLHFQKKSLNRILELRERGATVLFCSHNLYQVRSLCQRAAWIHG GRIEAIGHTEDVVTAYEAHERRRYAHLRTDAPDAAVAPTQTAAAPPAHASVPVKIMRV GIETADGINPAQVDSFQDLTLEIEVESYGDAPFHVGFAIVRPDKDNVFGSSTQFLGSR PPMRGVGQHRVRVRFPRLPLLSGEYLWSVYTLDDSGLQVLDMAELIQPFTVLNQKHRE FGLVWLEHEWLQVQ" misc_feature 700688..701410 /locus_tag="Alide_0667" /note="ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagH; COG1134" /db_xref="CDD:31329" misc_feature 700694..701362 /locus_tag="Alide_0667" /note="ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides...; Region: ABC_KpsT_Wzt; cd03220" /db_xref="CDD:72979" misc_feature 700850..700873 /locus_tag="Alide_0667" /note="Walker A/P-loop; other site" /db_xref="CDD:72979" misc_feature order(700859..700864,700868..700876,701078..701080, 701189..701194,701288..701290) /locus_tag="Alide_0667" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72979" misc_feature 701069..701080 /locus_tag="Alide_0667" /note="Q-loop/lid; other site" /db_xref="CDD:72979" misc_feature 701117..701146 /locus_tag="Alide_0667" /note="ABC transporter signature motif; other site" /db_xref="CDD:72979" misc_feature 701177..701194 /locus_tag="Alide_0667" /note="Walker B; other site" /db_xref="CDD:72979" misc_feature 701201..701212 /locus_tag="Alide_0667" /note="D-loop; other site" /db_xref="CDD:72979" misc_feature 701276..701296 /locus_tag="Alide_0667" /note="H-loop/switch region; other site" /db_xref="CDD:72979" gene 701890..702801 /locus_tag="Alide_0668" /db_xref="GeneID:10102697" CDS 701890..702801 /locus_tag="Alide_0668" /inference="similar to AA sequence:KEGG:Ajs_3056" /note="KEGG: ajs:Ajs_3056 lipid A biosynthesis acyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125324.1" /db_xref="GI:319761387" /db_xref="GeneID:10102697" /translation="MAAGAMSRDWRLDWAFPALGRLPTTLPWRLVHWLGRDAPAVRRA TELFLQQRFSQVFLGATGEQHRQWARAHLDMLATEMLDAAALHRLGEPGGPSITLQGW GHVQTLQQRGQGFILVLNHYDRLLTAVIALGRRGVALNILTMPVVDNPGLGEAQRAFL VRKIAATTRITGGQWRTSSEPLRPVHEGLRKGQGWVILADAWSPDFARMRDHAFLGGY LRLPTGIERLAESTGAALLHACTRSLAPDRLEVAVEALSGSPQAAIDAVIQRLDRDVR ERPWAWWHWGLWDQMWRPAAQEGESNV" misc_feature 702178..702741 /locus_tag="Alide_0668" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" misc_feature order(702250..702252,702259..702261,702265..702267, 702316..702324,702328..702330,702490..702492, 702502..702507) /locus_tag="Alide_0668" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153244" gene 702794..703798 /locus_tag="Alide_0669" /db_xref="GeneID:10102698" CDS 702794..703798 /locus_tag="Alide_0669" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: azl:AZL_f01750 hypothetical protein" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_004125325.1" /db_xref="GI:319761388" /db_xref="GO:0008168" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR020596" /db_xref="GeneID:10102698" /translation="MSDIERYDYAFDPEGDAWAARLLRRVPGRASVLELGPGPGAMTQ VLRARGQAVTVVENDPAALQALRPLGVQAVEADLDGLAWLDALQGRRFGAILACDVLE HLRSPEQVLEELAGLLEPMGSLIISLPNIAYAGVVAALRAGVFDYADKGLLDRTHLRF FTRRSIEQLLMDCGWVPLAWEANRVPVAQSEFAWHWEAIPDAWRQHLLTGWTDFDVYQ WMVVAAPARDSRDWEMVQVRAEASQLRAQLQALQLTHATEHASLLEHQKAFGEARQLI AQFEQERDSLRQQVQQLATDKAALEQACQDAQETSAQERAAIGGSSWRARLARRLGVD " misc_feature 702890..703171 /locus_tag="Alide_0669" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 703815..704459 /locus_tag="Alide_0670" /db_xref="GeneID:10102699" CDS 703815..704459 /locus_tag="Alide_0670" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc0977 transglycosylase signal peptide protein" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic" /protein_id="YP_004125326.1" /db_xref="GI:319761389" /db_xref="InterPro:IPR000189" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10102699" /translation="MRKVRAACTLVLLAGAWVAAAQAQTVWQFVDRDGVTHMGNVPPP APRGVIWIEGVGSATPAGQSKSGNTQAAKLPGYAAAQPLLEEAARAQALEPALVIAVA AAESGFNADAVSRKGALGLMQVMPATAERYGVAGRSGTDGRHAVMEPKLNVQVGSRYL ADLLRMFDGDKELALAAYNAGEGAVVKHGRRIPPYPETRQYVDKVMRLYQTLVR" sig_peptide 703815..703886 /locus_tag="Alide_0670" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.886 at residue 24" misc_feature 704106..704444 /locus_tag="Alide_0670" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(704127..704129,704187..704189,704289..704291, 704346..704348) /locus_tag="Alide_0670" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 704127..704129 /locus_tag="Alide_0670" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 704493..705593 /locus_tag="Alide_0671" /db_xref="GeneID:10102700" CDS 704493..705593 /locus_tag="Alide_0671" /inference="protein motif:PFAM:PF00953" /note="PFAM: Glycosyl transferase, family 4, conserved region; KEGG: vei:Veis_1227 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase, family 4, conserved region protein" /protein_id="YP_004125327.1" /db_xref="GI:319761390" /db_xref="InterPro:IPR018481" /db_xref="GeneID:10102700" /translation="MIWLSFVAFLSSVLAAAGVLRWAQDHAANYGRAVPQRFHYGDVP RLGGLAMLVGIALSWGLGRLTTAMGDSSSLRMDSWVLWWLLALMPAVVGGMVEDVTQR LAPRFRLLLSLLTAVLAVSMLGLQLPRLDLPWLDALLATAPWLGVGIALLAVTGLPHA FNIIDGYNGLAGMVAIIVCLALAHVALQVGDRGLAAVLVSTAAATGGFLVWNYPRGML FAGDGGAYIWGGVIALASLSLVQRNPQVSPWFPMLLLIYPVWETVFSMYRKLVRGVSP GVADALHFHQLIYRRIVRRVLHGDAARRMLKRNNRTSPYLWAFTLLTVVPAVLFWRYT PVLIGFCLLFMVLYVMAYLAIIRFKVPGWLQP" misc_feature 704493..705503 /locus_tag="Alide_0671" /note="UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]; Region: Rfe; COG0472" /db_xref="CDD:30820" sig_peptide 704493..704564 /locus_tag="Alide_0671" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.891) with cleavage site probability 0.699 at residue 24" misc_feature 704595..705200 /locus_tag="Alide_0671" /note="This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases...; Region: GT_MraY_like; cd06912" /db_xref="CDD:133467" misc_feature 704781..704786 /locus_tag="Alide_0671" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133467" misc_feature 705147..705158 /locus_tag="Alide_0671" /note="putative catalytic motif [active]" /db_xref="CDD:133467" gene 705654..706544 /locus_tag="Alide_0672" /db_xref="GeneID:10102701" CDS 705654..706544 /locus_tag="Alide_0672" /EC_number="2.7.2.8" /inference="protein motif:TFAM:TIGR00761" /note="TIGRFAM: acetylglutamate kinase; KEGG: ajs:Ajs_0588 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase" /codon_start=1 /transl_table=11 /product="acetylglutamate kinase" /protein_id="YP_004125328.1" /db_xref="GI:319761391" /db_xref="GO:0003991" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR001057" /db_xref="InterPro:IPR004662" /db_xref="InterPro:IPR011148" /db_xref="GeneID:10102701" /translation="MTDLLSIAPRDKAEILAQALPYIRKFHGKTMVIKYGGNAMTDPE LQQDFAEDVVLLKLVGINPVVVHGGGPQIEQALNRLGKKGEFIQGMRVTDAETMEVVE WVLAGEVQQDIVGLIHHAGGKAVGLTGRDGGMIRARKLKMLDNKDPSIEYDVGQVGDI VAIDPSVVKALQDDAFIPVISPIGFGEENESYNINADVVASKLATVLQAEKLVMLTNI PGVLDKNGQLLAELTPQQIDALIADGTISGGMLPKLAGAIDAAKAGVNAVHVVDGRVP HSMLLEILTDQAYGTMIRSH" misc_feature 705696..706532 /locus_tag="Alide_0672" /note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using...; Region: AAK_NAGK-C; cd04250" /db_xref="CDD:58616" misc_feature 705696..705725 /locus_tag="Alide_0672" /note="feedback inhibition sensing region; other site" /db_xref="CDD:58616" misc_feature order(705699..705707,705711..705713,705720..705725, 705804..705806,705816..705818,705828..705830, 705888..705893,705948..705950,705957..705962, 705975..705977,705984..705986,705996..705998, 706017..706019,706023..706031,706035..706037, 706041..706052,706152..706154,706179..706181, 706482..706484,706491..706496,706506..706508) /locus_tag="Alide_0672" /note="homohexameric interface [polypeptide binding]; other site" /db_xref="CDD:58616" misc_feature order(705753..705755,705762..705767,706236..706238, 706299..706307,706317..706319,706386..706388, 706392..706394,706398..706403,706410..706412) /locus_tag="Alide_0672" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58616" misc_feature order(705855..705860,705921..705926,706230..706232, 706236..706241) /locus_tag="Alide_0672" /note="N-acetyl-L-glutamate binding site [chemical binding]; other site" /db_xref="CDD:58616" gene 706727..707362 /locus_tag="Alide_0673" /db_xref="GeneID:10102702" CDS 706727..707362 /locus_tag="Alide_0673" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0589 nucleoid occlusion protein" /codon_start=1 /transl_table=11 /product="regulatory protein tetr" /protein_id="YP_004125329.1" /db_xref="GI:319761392" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10102702" /translation="MSDSSPDSSVPGDAPASRRRLRPGERREQILHALAAMLEQPGAE RITTAALARRLDVSEAALYRHFASKAQMFEGLIDFIEHSVFTLVRQIVEHPGEAGGAQ RAARVAAMVLQFGERNPGMVRVMVGDALVFENERLQQRMNLFFDKVEATLRQCLRPAA EADGEAAPTVQAQVRAAALCDLIRGRLQRYARSGFRRLPTEHLDATLALQL" misc_feature 706808..707353 /locus_tag="Alide_0673" /note="division inhibitor protein; Provisional; Region: slmA; PRK09480" /db_xref="CDD:181894" misc_feature 706814..706954 /locus_tag="Alide_0673" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 707504..708160 /locus_tag="Alide_0674" /db_xref="GeneID:10102703" CDS 707504..708160 /locus_tag="Alide_0674" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_0570 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="regulatory protein tetr" /protein_id="YP_004125330.1" /db_xref="GI:319761393" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10102703" /translation="MPVSTSSPKTARVSRREGRALHKGRQTKAAIVDAALGLATHIGL EGLSIGALADVTGMSKSGVFAHFGSREELQISVIREYHARFEQEVFYPAMEAPRGIAR LRAMFDNWMKRTSVEIDSGCIYISGAVEFDDRAGPVRDALANSVLTWQAAMKRAIAQC KECGEIRPGVSEEQMLFEIHGLILALHYEARFLHTPGSMERANTGFDNILARYRADGG " misc_feature 707570..708076 /locus_tag="Alide_0674" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 707594..707722 /locus_tag="Alide_0674" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 708208..710004 /locus_tag="Alide_0675" /db_xref="GeneID:10102704" CDS 708208..710004 /locus_tag="Alide_0675" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_0571 acyl-CoA dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004125331.1" /db_xref="GI:319761394" /db_xref="GO:0003995" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10102704" /translation="MPTYNPPLRDMQFVLHEVFQVSDEFKAMPRHADVDADTINAVLE EAGKFAAEVTFPLNVSGDTEGCTLDQQTHEVTTPKGFKEAYAKYVEGGWAALSCDPEY GGQGLPHVVNQCLYEMLNSANQAWTMYPGLSHGAYEALLAHGTDAQKKTYLPKLVSGE WTGTMCLTEPHCGTDLGLLRTKAEPQADGTYRITGNKIFISAGEHDVAANIVHLVLAR LPDAPKGSKGISLFVVPKFHVNADGSLGARNPIYCTGLEHKMGIHGNATAQIAIDGAV GTMVGEPNKGLAAMFVMMNAARLGVGNQSLGLTEVAFQNALAYAKDRLQMRSLSGVKA KDKEADPIIVHPDVRKMLLTAKAYAEGARALQIYCTLLLDKAHHHPDEKERKGCDELV ALLTPIVKAFITDNGHIATNACMQVFGGHGFIKEWGMEQFVRDNRINMIYEGTNTVQS LDLLGRKVLGNQGATLKKLGKLIGQLVAEEGVNEKMAEFINPIAILGEQMTKFTTEIG FKGMQNPDEVGAAAVDYLRVAGHLVFGYLFARMAQVSLRAIAAGSQDPFYVAKLQTAR FYFAKLFPETATLMRTARAGAKVLMDTDAALA" misc_feature 708211..708312 /locus_tag="Alide_0675" /note="Acyl-CoA dehydrogenase N terminal; Region: AcylCoA_DH_N; pfam12418" /db_xref="CDD:193019" misc_feature 708214..709977 /locus_tag="Alide_0675" /note="acyl-CoA dehydrogenase; Provisional; Region: PTZ00456" /db_xref="CDD:185635" misc_feature 708331..709581 /locus_tag="Alide_0675" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(708610..708612,708700..708702,708706..708708, 708802..708804,708808..708810,709528..709536, 709540..709542,709546..709548) /locus_tag="Alide_0675" /note="active site" /db_xref="CDD:173838" misc_feature 709612..709992 /locus_tag="Alide_0675" /note="Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806" /db_xref="CDD:193282" gene 710075..710503 /locus_tag="Alide_0676" /db_xref="GeneID:10102705" CDS 710075..710503 /locus_tag="Alide_0676" /inference="protein motif:PFAM:PF09917" /note="KEGG: dia:Dtpsy_0572 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2147" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125332.1" /db_xref="GI:319761395" /db_xref="InterPro:IPR019223" /db_xref="GeneID:10102705" /translation="MRQALTAIVLMAITAPALAQMSPLGLWRSVDDKTGEPKAEIRIV DNAGVLSGRIEKTLRKDAKPTCTECQDDRKGQPIVGLEIIRGGKKDEGKDVWAGGRIL DPENGKDYRASLTPVDGGKKLEVRGYLGPFWRTQTWQRLE" sig_peptide 710075..710134 /locus_tag="Alide_0676" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 20" misc_feature 710147..710494 /locus_tag="Alide_0676" /note="Uncharacterized protein conserved in bacteria (DUF2147); Region: DUF2147; cl01951" /db_xref="CDD:194215" gene 710525..712927 /locus_tag="Alide_0677" /db_xref="GeneID:10102706" CDS 710525..712927 /locus_tag="Alide_0677" /inference="protein motif:PFAM:PF02737" /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_1339 3-hydroxyacyl-CoA dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase nad-binding protein" /protein_id="YP_004125333.1" /db_xref="GI:319761396" /db_xref="GO:0003824" /db_xref="GO:0016491" /db_xref="InterPro:IPR001753" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="GeneID:10102706" /translation="MTRFNVKKVAVLGAGVMGAQIAAHLVNVKVPVVLFDLPAKEGSK SAIAEKAIANLKKLKPSPIGVAEDADLIQPANYEEHMGLLKDCDLVIEAIAERMDWKL DLYTKIAPHVAAHALLASNTSGLSITKLSEALPEALRHRFCGIHFFNPPRYMPLVELI ATPATEARVIDQLEAFVTSGLGKGVVRAKDTPNFIANRIGIAGMLSTMKEVENFGLTY DVVDDLTGKKLGRASSGTFRTADVVGLDTMAHVIKTLQDNLGPETDPFYGSFGTPPVL AKLIALGNLGQKTKAGFYKKVGRDILRFELESEDYVPAGQKADDVYGRMLKRPAAERL KLLRNAEGAPGRFLWAILRNSFHYAAVHLETIAESARDVDLCLRWGFGMKQGPFELWQ EAGWLEVAKMVQEDIDAGKALCSAPLPKWVFEGPVAEAGGVHTAEGSWSPALKKFVAR RVLPVYERQLFPEKLLGEASLPDWQTAGTTLAESKALRTWTLDGKVLIASIKNKMHAI SPEVMEGLMEAVELAEQEYQAMVIWSGDAPFSVGADLEATMPAFVVGGADAIDSIEAE LQNLMLRIRYAQVPVVSAIHGMALGGGCELAVYSARRVAHMESYIGLVEVGVGLVPGA GGLTYIARRAAENAARSTGKDLLPFLTEGFTAAAMAKVGTSAIESRKLGYLLDSDIIV PHKDELLFVAINEARAMAQGGWRAPLKRLFPVVGRNGIATIKAQLVNMEGGGFISAYD FKVASMIAEVVCGGDVDAGSLVSEEYLMQLERKAFCHLIGQPKTHERILGMLNTGKPV RN" misc_feature 710540..711448 /locus_tag="Alide_0677" /note="3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Region: FadB; COG1250" /db_xref="CDD:31442" misc_feature 710546..711097 /locus_tag="Alide_0677" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 711104..711409 /locus_tag="Alide_0677" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" misc_feature 711989..712513 /locus_tag="Alide_0677" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(712037..712039,712043..712045,712133..712135, 712145..712159,712286..712288,712292..712300, 712364..712369,712376..712378) /locus_tag="Alide_0677" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(712151..712153,712298..712300) /locus_tag="Alide_0677" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(712238..712240,712262..712264,712325..712336, 712370..712381,712397..712399,712403..712411, 712415..712420,712433..712438,712442..712444, 712457..712459,712463..712465,712469..712471, 712478..712480,712511..712513) /locus_tag="Alide_0677" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 712948..714141 /locus_tag="Alide_0678" /db_xref="GeneID:10102707" CDS 712948..714141 /locus_tag="Alide_0678" /EC_number="2.3.1.16" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: acetyl-CoA acetyltransferase; KEGG: mpt:Mpe_A0416 acetyl-CoA acetyltransferase; PFAM: Thiolase-like" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004125334.1" /db_xref="GI:319761397" /db_xref="GO:0003991" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020610" /db_xref="InterPro:IPR020613" /db_xref="InterPro:IPR020615" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10102707" /translation="MKQVQDAYIVAATRTPIGRSGRGYFKNTRPDDLLVAAIRGAMAQ VPMLDPKAIEDSIIGCSFPEGEQGMNMARIAMGLVFDHPVGGVTVNRFCASGVTAIQM AADRIRVGEADVLIAGGAESMSLVPMGGNKPSFNPEVFARDENVGIAYGMGLTAEKVA QQWKVSREAQDAFALQSHLRAVKAQQVGEFSDEITPFEIVERSPNLATGEVETRKRTV RLDEGPRPDTTREALAKLKPVFAARGSVTAGNSSQTSDGAGALILASEKAVKQFGLVP LARFVSYAARGVPPEIMGIGPIEAIPAALRYAGLQSQDIGWYELNEAFAAQSLAVMNT LGLDPAKVNPMGGAIALGHPLGATGAIRAATVVHALRRHKLKYGMVTMCVGTGQGAAG IFERV" misc_feature 712948..714138 /locus_tag="Alide_0678" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK09052" /db_xref="CDD:181626" misc_feature 712969..714135 /locus_tag="Alide_0678" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(713026..713028,713110..713112,713155..713157, 713164..713166,713173..713175,713206..713217, 713239..713241,713260..713265,713272..713274, 713317..713319,713794..713796,713800..713802, 713806..713808,713866..713868,714103..714108) /locus_tag="Alide_0678" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(713224..713226,714004..714006,714094..714096) /locus_tag="Alide_0678" /note="active site" /db_xref="CDD:29411" gene 714185..715018 /locus_tag="Alide_0679" /db_xref="GeneID:10102708" CDS 714185..715018 /locus_tag="Alide_0679" /inference="similar to AA sequence:KEGG:Dtpsy_0576" /note="KEGG: dia:Dtpsy_0576 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125335.1" /db_xref="GI:319761398" /db_xref="GeneID:10102708" /translation="MTSHHSIHPLDEALALASETTGQYTGRTTPGYWNMVGPFGGITA ATLLQAVMQHPARLGEPLSLTVNYAGALGEGPFTLQATPVRTNRSTQHWTLSILQAGA DGAPVVTTTATVVTAVRRETWGATDTPMPAVPAPAQCKPVRLAFRSEWLRRYEMRPVT GELPTQWDDSGHTSMTQLWMRDAPARPLDFCALAAMADIFFPRVWLRRARQVPAGTVS ITVYFHAGGDLLAQTGTGYLLGQARAQEFRNGFFDQTALLWNEAGIVLATSHQIVYYK E" misc_feature <714572..714997 /locus_tag="Alide_0679" /note="Acyl-CoA thioesterase [Lipid metabolism]; Region: TesB; COG1946" /db_xref="CDD:32129" gene 715026..715802 /locus_tag="Alide_0680" /db_xref="GeneID:10102709" CDS 715026..715802 /locus_tag="Alide_0680" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_0577 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004125336.1" /db_xref="GI:319761399" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10102709" /translation="MSNTSQDILVHDEGGVRTITFNRVERKNSITTAMYAQLADAFET AAQDAAVRVVVLQGDVAVFSAGNDIGDFLQQPPSTQDAPVFRFLRAIATFPKPVVAAV CGPAVGIGTTMLLHCDLVYAGDNAAFSMPFVNLGLCPEAGSSLLVPQMLGYHRAAEAL LLGEPFMAEAALEVGLVNRVVPPTECNAIAQAQARKLAAKPLSALIETKRLLKKGQTA AVLERMAEEGASFGRMLREPAAREAFSAFMEKRHPDFSKC" misc_feature 715035..715799 /locus_tag="Alide_0680" /note="enoyl-CoA hydratase; Provisional; Region: PRK06688" /db_xref="CDD:180658" misc_feature 715047..715580 /locus_tag="Alide_0680" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(715104..715106,715110..715112,715206..715208, 715218..715232,715338..715340,715344..715352, 715416..715421,715428..715430) /locus_tag="Alide_0680" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(715224..715226,715350..715352) /locus_tag="Alide_0680" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(715290..715292,715314..715316,715377..715388, 715422..715433,715449..715451,715455..715463, 715467..715472,715485..715490,715494..715499, 715503..715508,715515..715517,715548..715550, 715557..715559) /locus_tag="Alide_0680" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 716058..716615 /locus_tag="Alide_0681" /db_xref="GeneID:10102710" CDS 716058..716615 /locus_tag="Alide_0681" /inference="protein motif:PFAM:PF04519" /note="PFAM: protein of unknown function DUF583; KEGG: dia:Dtpsy_0579 protein of unknown function DUF583" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125337.1" /db_xref="GI:319761400" /db_xref="InterPro:IPR007607" /db_xref="InterPro:IPR010916" /db_xref="GeneID:10102710" /translation="MAVQNPFFGKRETESFQPRQPSSSVLGGSVTSTAGASSNAAAAK PAASNTTESGGSKLTVGPNIKLKGVEITDCDTLVVEGTVEATMDSRVIQIAEQGAFHG TAEIDIAEIHGEFDGTLTVREKLVIFSTGKVSGKIRYGKVVIEEGGQLSGEISVGVGS ARTQAASSSSASPAASSSPPALAAA" sig_peptide 716058..716186 /locus_tag="Alide_0681" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.658) with cleavage site probability 0.402 at residue 43" misc_feature 716223..716519 /locus_tag="Alide_0681" /note="Polymer-forming cytoskeletal; Region: Bactofilin; cl09137" /db_xref="CDD:195802" gene complement(716667..717092) /locus_tag="Alide_0682" /db_xref="GeneID:10102711" CDS complement(716667..717092) /locus_tag="Alide_0682" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0601 thioesterase superfamily protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004125338.1" /db_xref="GI:319761401" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10102711" /translation="MSQDRTCTHTQLPTDKELVLKVMPMPADTNNNGDIFGGWVMAQV DLAGSVLPARRIQGRMATVAVNEFVFKQPVRVGDLLSFFAEVKRVGNTSITVQVEVYA EHIRTQGRYLKVTEASLTYVAIDENGRPRPIPKLPGDAP" misc_feature complement(716691..717062) /locus_tag="Alide_0682" /note="Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain...; Region: BFIT_BACH; cd03442" /db_xref="CDD:48037" gene 717135..719024 /locus_tag="Alide_0683" /db_xref="GeneID:10102712" CDS 717135..719024 /locus_tag="Alide_0683" /inference="protein motif:PFAM:PF00005" /note="KEGG: ajs:Ajs_0602 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125339.1" /db_xref="GI:319761402" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:10102712" /translation="MRRYGEAPAPDSPRIRSDGATLRRLLPYLWEYKGRVLAAIAFMV GAKLANVGVPLLLKRLVDAMALPAGSPTALLVVPVGLLLAYGGLRLANSVFSELRELV FAKATHGAARAIALKTFEHLHALSLRFHLERQTGGMTRDIERGVRGIESLVSFALFNL GATLIEVLLVLFILARQFDAWFAVITLSALVLYIAFTVGVTQWRIQFRRQANLFDSAA HSKAIDSLLNYETVKYFNNEAFEARRYDESLEQLRRAQLKSRSTLSMLNSGQQLIIAV GLVAMLWRATEGVAAGRMTLGDLVMVNAFMIQIYIPLNFLGVIYREIKQNLTDLDKMF TLMDKEQEVADAPGAVALAGLDAPTVRFEDVHFAYDPARPILRGVSLTIPAGKTVAVV GPSGAGKSTLGRLLYRFYDVGIEPPRSPTACGSLPPEGASAELGRPGVGGGGRITIAG QDIRAVTQQSLRRAIGIVPQDTVLFNDTVAYNIAYGRTGASQAEVEQAARAAHIHDFI MSTPQGYATMVGERGLKLSGGEKQRVAIARTLLKNPPILIFDEATSALDSANERAIQA ELRQVAQGKTTLVIAHRLSTVVDAHEIVVMEAGRIVERGTHAALLAQGGRYASMWALQ QSIGE" misc_feature 717240..718061 /locus_tag="Alide_0683" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature 717426..718997 /locus_tag="Alide_0683" /note="ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]; Region: ATM1; COG5265" /db_xref="CDD:34862" misc_feature 718212..719006 /locus_tag="Alide_0683" /note="ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to...; Region: ABCC_ATM1_transporter; cd03253" /db_xref="CDD:73012" misc_feature 718311..718334 /locus_tag="Alide_0683" /note="Walker A/P-loop; other site" /db_xref="CDD:73012" misc_feature order(718320..718325,718329..718337,718542..718544, 718782..718787,718878..718880) /locus_tag="Alide_0683" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73012" misc_feature 718533..718544 /locus_tag="Alide_0683" /note="Q-loop/lid; other site" /db_xref="CDD:73012" misc_feature 718710..718739 /locus_tag="Alide_0683" /note="ABC transporter signature motif; other site" /db_xref="CDD:73012" misc_feature 718770..718787 /locus_tag="Alide_0683" /note="Walker B; other site" /db_xref="CDD:73012" misc_feature 718794..718805 /locus_tag="Alide_0683" /note="D-loop; other site" /db_xref="CDD:73012" misc_feature 718866..718886 /locus_tag="Alide_0683" /note="H-loop/switch region; other site" /db_xref="CDD:73012" gene 719354..720970 /locus_tag="Alide_0684" /db_xref="GeneID:10102713" CDS 719354..720970 /locus_tag="Alide_0684" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: reh:PHG398 acyl-CoA synthetase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004125340.1" /db_xref="GI:319761403" /db_xref="GO:0003824" /db_xref="InterPro:IPR000568" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10102713" /translation="MYPRFSALLQSRIEADPQAPAFVHRDGVMTVASFASQVDRMTAC LRDLGIAAGDRVAVWLVNRVEWLALLMAAGRLGATVAAVNTRYRREEVAHILRTSGAR WLITQMSHQRIDFLAILAELDAAQVPDLQQVLLLGGGSDAPPAPSLLPMGLAWPMAAL SWSQFPPEPGPDCSDVENPVVLFSTSGTTRAPKLVMHPQRTLVDHARRCAHAYRLDAP GACLLTLLPLCGAFGLNSTLAAFAAGAPVVLPALFEADEAAALMVRHAVTHCFGSDEM VRRLAETSDAPEPFPALRFFGFGAFTSNFSEIARACCRRGIPLHGLYGSSEVLAIFSA QADDLPLAQRLEGGGQPVAGVQARIRIRDEATGQLLPPGQSGQIEIQAPSLFLGYFGN PAATAEAMVDGYFKTGDLGHLRPDGSLVFETRLGDAVRLGGNLVNPAEIEELVERYPG VREAQVVAVPIQGQDRPVAFVIFDAQPDLGDLLAHLRRSMANYKVPQRVWPLAAFPLT EGSNGNKISRTQLRQMAMDQLAIEAPQSQE" misc_feature 719354..720955 /locus_tag="Alide_0684" /note="acyl-CoA synthetase; Validated; Region: PRK06164" /db_xref="CDD:180436" misc_feature 719870..720712 /locus_tag="Alide_0684" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature <720449..720940 /locus_tag="Alide_0684" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 720974..721444 /locus_tag="Alide_0685" /db_xref="GeneID:10102714" CDS 720974..721444 /locus_tag="Alide_0685" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC domain protein dehydratase; KEGG: reh:PHG397 hypothetical protein" /codon_start=1 /transl_table=11 /product="maoc domain protein dehydratase" /protein_id="YP_004125341.1" /db_xref="GI:319761404" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10102714" /translation="MSPRYFEDFEVGERFTSSGRTVTETDLTLFNMLSGDWNPIHADA EFAAGTRFGQRIVHGAFGVALLTGFMHQMGIFEGTAVAMLSLQEWTFKAPILIGQTLR LELTVTELDPGSSQRVGRLGRHLQLRDQHQQIVQEGHSDLLILKRAAAHPNGSI" misc_feature 720986..721405 /locus_tag="Alide_0685" /note="The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509" /db_xref="CDD:193847" misc_feature order(721145..721150,721244..721255) /locus_tag="Alide_0685" /note="active site 2 [active]" /db_xref="CDD:48035" misc_feature order(721163..721165,721172..721177,721184..721186, 721220..721228) /locus_tag="Alide_0685" /note="active site 1 [active]" /db_xref="CDD:48035" gene 721484..722479 /locus_tag="Alide_0686" /db_xref="GeneID:10102715" CDS 721484..722479 /locus_tag="Alide_0686" /inference="similar to AA sequence:KEGG:PHG396" /note="KEGG: reh:PHG396 NagM-like protein" /codon_start=1 /transl_table=11 /product="nagm-like protein" /protein_id="YP_004125342.1" /db_xref="GI:319761405" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102715" /translation="MQKNILSTMAWLTVSLSATAAVAQTPAQPYPSRPVTIVVPYSAG GPVDNFIRALGQQLSESWKQPVVVLNKPGANEIIGADQVAKSAPDGYTLFAGTEASLT MSPHLYKKLPYNVEADFVPISQLISLPLMLFTHKGTPANTVSEFVELARKAKAQGKPL SYGSSGAGGIAHLPMVTFEKQEGISMTHVPYRGAANLIPDVIAGQVDAAVLAVSVIEQ HVKTGALKPLAVSSETRSVALPQVPTFKEAGVKDIHAIFSIGLLAPKGTPAAVVDKVA SSTRTIIATPDFRQKNIDAFSYVPVASSPTEFKAFLGSNSKLQAERVLASGVRLD" sig_peptide 721484..721555 /locus_tag="Alide_0686" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.850 at residue 24" misc_feature 721571..722470 /locus_tag="Alide_0686" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 721637..722464 /locus_tag="Alide_0686" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 722528..723505 /locus_tag="Alide_0687" /db_xref="GeneID:10102716" CDS 722528..723505 /locus_tag="Alide_0687" /inference="protein motif:PFAM:PF03060" /note="PFAM: 2-nitropropane dioxygenase NPD; KEGG: reh:PHG395 2-nitropropane dioxygenase" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase npd" /protein_id="YP_004125343.1" /db_xref="GI:319761406" /db_xref="GO:0018580" /db_xref="InterPro:IPR004136" /db_xref="GeneID:10102716" /translation="MNAITSRIPAVLQNLALPIIASPMFTVSYPELVLAQCKAGIVGS FPALNARQPELLDEWLHQMKAELDAYRSAHPGQPVGPIAVNQIAHSSNVRLMQDMETC IEHQVPVIITSLRAPAREVVDAVHGYGGVIFHDVVNVRHAQKALEAGVDGLIVVAAGA GGHAGTQSPFALVGEVRRIFDGPLALSGAMATGSAVLAARAMGADFAYMGTRFIASRE ANASEDYKQAIVKAGASDIVYSNWFSGVHGNYLRESIERAGLDPDDLPVGDKAKMSFA DGRSKAKAWKDIWGAGQGVGQIHDLPEVREIVARLRAEYDLARARICAG" misc_feature 722561..723490 /locus_tag="Alide_0687" /note="Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]; Region: COG2070" /db_xref="CDD:32253" misc_feature 722570..723280 /locus_tag="Alide_0687" /note="2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin...; Region: NPD_like; cd04730" /db_xref="CDD:73392" misc_feature order(722594..722599,722786..722788,722864..722866, 722930..722932,722993..722995,723005..723010, 723086..723094,723149..723160) /locus_tag="Alide_0687" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature 723011..723016 /locus_tag="Alide_0687" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature 723014..723016 /locus_tag="Alide_0687" /note="putative catalytic residue [active]" /db_xref="CDD:73392" gene 723514..724503 /locus_tag="Alide_0688" /db_xref="GeneID:10102717" CDS 723514..724503 /locus_tag="Alide_0688" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:PHG401 regulatory protein" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125344.1" /db_xref="GI:319761407" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102717" /translation="MGHAGAVSEPRRRPYASSPEVLPVEQSPYLFFAEVVEAGSFATA ARRLGMDRSNVSRRIKELEQTAGVQLLRRTTRKMVLTDLGAAFYEQCLAVRSEVEQAK NLLLSHGDVVRGALHVSCPPAIGRQYLVPLFQTFCRRYPAVSLQITLKSGALDLIEER IDVAIRFTNEPSPQHVARVLGHTRWIFCASPAYLAEHGTPHLPEDLAHLSWLGMRARM ELQLRKESALHRVVLRSRVACPDYALLGQMAHDGLGVCLLPVYVASHDLAQGELVQVL ADYQIEPTPGSTLYAITLPGIHSSPQVKAFVQFLAETVQAEFTSLRAFVENRL" misc_feature 723598..724458 /locus_tag="Alide_0688" /note="LysR family transcriptional regulator; Provisional; Region: PRK14997" /db_xref="CDD:184959" misc_feature 723607..723765 /locus_tag="Alide_0688" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 723853..724443 /locus_tag="Alide_0688" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422" /db_xref="CDD:176114" misc_feature order(723883..723885,723895..723897,724012..724014, 724054..724056,724060..724062,724237..724239, 724288..724290,724378..724380) /locus_tag="Alide_0688" /note="putative effector binding pocket; other site" /db_xref="CDD:176114" misc_feature order(723886..723891,723901..723906,723910..723915, 723922..723924,723934..723936,723940..723960, 724141..724143,724219..724233,724252..724257, 724264..724266) /locus_tag="Alide_0688" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176114" gene 724552..725889 /locus_tag="Alide_0689" /db_xref="GeneID:10102718" CDS 724552..725889 /locus_tag="Alide_0689" /inference="protein motif:PFAM:PF03819" /note="PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase" /codon_start=1 /transl_table=11 /product="mazg nucleotide pyrophosphohydrolase" /protein_id="YP_004125345.1" /db_xref="GI:319761408" /db_xref="InterPro:IPR004518" /db_xref="GeneID:10102718" /translation="MDVKALQRQLRDFAAARDWQPYHSPKNLVMALMVEAAELLELFQ WKTITESRRFTRNASDKERVADEIADVLLYLLQLADHTDVDVEQAVEHKLRKNAQKHP TKHPELQPTASLPEQPKVHLLVDWENVQPDGSALKALVPESTDVWLFHGPHQKVDDSS HRSIFGDSVTLVPRSGVGKNALDFQLTYYVGYISARQPDATFAIVSNDQGYDPMLEHV RELGFKARRCGFHKLLLKTEEIQVLVPTPAPPPPVAAPAKKTPAKAADPKATHQDVRK LVQMLQGMEPWERPGRRDALLALLQAHMGEIGMVSPRVAHALAQLQGQKHVAIKGDQV SYPPEPAAPASAAKKKTAPAKKAVAPAKQAPAKAAQKTTVSQIAQAVIASLKKMPKNK PTRHAGLLKFIETHAVKAADPKAMSQQVCALLEARKEVTQAPDGKSVTYPKMK" misc_feature 724552..724869 /locus_tag="Alide_0689" /note="MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345" /db_xref="CDD:193780" gene complement(725944..726975) /locus_tag="Alide_0690" /db_xref="GeneID:10102719" CDS complement(725944..726975) /locus_tag="Alide_0690" /inference="protein motif:TFAM:TIGR00787" /note="KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7" /codon_start=1 /transl_table=11 /product="trap dicarboxylate transporter, dctp subunit" /protein_id="YP_004125346.1" /db_xref="GI:319761409" /db_xref="InterPro:IPR004682" /db_xref="InterPro:IPR018389" /db_xref="GeneID:10102719" /translation="MKLRTFLTTAVAAAAAVAFSTPALAQNYKSEYRMSLVLGTAFPW GKGGEIWAAKVKEKTNGRINIKLYPGVSLIQGDQTREFSALRQGVIDMAIGSTINWSP QVKQLNLFSLPFLFPDYAAVDAVTQGDVGKSIFQTLEKAGVVPLAWGENGYREISNSK HAIKSPADLKGLKIRVVGSPLFLDTFTALGANPTQMSWADAQPAMASGAVDGQENPIS VYQAAKLYTVAQKHITMWGYINDPLIFVVNKDIWNSWTPADREAVRQAAIEAGKEEIA IARKGMVEADKPLLKQIEGLGVTVTQLTPAEREAFVKATRPVFDKWKGQIGADLVNAA EKAIAARKK" sig_peptide complement(726898..726975) /locus_tag="Alide_0690" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 26" misc_feature complement(725956..726900) /locus_tag="Alide_0690" /note="Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl00710" /db_xref="CDD:153950" gene complement(726999..728297) /locus_tag="Alide_0691" /db_xref="GeneID:10102720" CDS complement(726999..728297) /locus_tag="Alide_0691" /inference="protein motif:TFAM:TIGR00786" /note="KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit" /codon_start=1 /transl_table=11 /product="trap dicarboxylate transporter, dctm subunit" /protein_id="YP_004125347.1" /db_xref="GI:319761410" /db_xref="InterPro:IPR004681" /db_xref="InterPro:IPR010656" /db_xref="GeneID:10102720" /translation="MIATLLFVAFLVLMFVGVPIGAALGLAGAAAIALANADAQWFGL LAVPQNFYAGLGKYPLLAIPMFVLVGSIFDRSGVALRLVNFAVSIVGRGPGMLPLVAI TVAMFLGGISGSGPANAAAVGGVMIAAMSRAGYPGSFSASVVGAAAATDILIPPSVAF IVYSVLVPGASVPALFAAGMVPGVLAGVALIAPAVWMARRHKMGALEADMPRPPFWRS LREASWGLAAPVLILGGMRAGWFTPTEAAVVAVFYGLFVGMAIHRTIGVRDLYVILRE AGELSAVILVVVSLAGIFAFSLSTLGVIDPVAHAIVNSGLGEYGVLALLILLLITVGM FLDGISIFLIFVPLLLPIMQHYGWDPVWFGVILTLKVALGQFTPPLAVNLMVSCRIAG VRMESTVRWVGPMLLAMFIVMVAVIAFPQLALWLPAKLGY" sig_peptide complement(728184..728297) /locus_tag="Alide_0691" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.940) with cleavage site probability 0.367 at residue 38" misc_feature complement(727032..728168) /locus_tag="Alide_0691" /note="DctM-like transporters; Region: DctM; pfam06808" /db_xref="CDD:148424" misc_feature complement(727005..728147) /locus_tag="Alide_0691" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(728294..728875) /locus_tag="Alide_0692" /db_xref="GeneID:10102721" CDS complement(728294..728875) /locus_tag="Alide_0692" /inference="protein motif:PFAM:PF04290" /note="PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ" /codon_start=1 /transl_table=11 /product="tripartite ATP-independent periplasmic transporter dctq component" /protein_id="YP_004125348.1" /db_xref="GI:319761411" /db_xref="InterPro:IPR007387" /db_xref="GeneID:10102721" /translation="MSSHPTPGPAEHAAPAGAADPSEPRSLRIEDWLTVIVMALLALI TFANVIVRYFTDSSFAWTEEISVFLMIVLALVAGSAAVARDRHIRIEFFCESGSAMRR RRLAQLGALLVALLFAVIAVLSMRVVWDDWRFEETSPGIGVPQWWYSVWLPVLSLLIA WRAIGLLVLRTRQSDVEYLIDEAGDDGNGEPRP" misc_feature complement(728357..728755) /locus_tag="Alide_0692" /note="Tripartite ATP-independent periplasmic transporters, DctQ component; Region: DctQ; cl01181" /db_xref="CDD:194064" gene 729042..729989 /locus_tag="Alide_0693" /db_xref="GeneID:10102722" CDS 729042..729989 /locus_tag="Alide_0693" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dia:Dtpsy_0586 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="regulatory protein lysr" /protein_id="YP_004125349.1" /db_xref="GI:319761412" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102722" /translation="MRAMETKWLEDFVSLAETRSFSRSAQLRHVTQPAFSRRIQALEA WAGTDLVDRSSYPTRLTAAGTTLYDQALEVLQALQNTRAILRAHTSAGTDMIEFAVPH TLAFTFFPAWVSAVRADFGPLKSRLIALNVHDAVLRLVEGGCDLLISYHHPSQPLQLD AERYEMVTLGQEVLAPYAKAGPDGQPLFSLPGRAGEPLPYLAYAPGAYLGRVTELILK QAGTAIHLDRVYETDMAEGLKAMALEGHGVAFLPYSAVKKELRSRKLASAAPPGVEDL QMVMEVRAYREKPSRKEPAKSLAQALWTYLQAQGGKNPI" misc_feature 729051..729947 /locus_tag="Alide_0693" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 729060..729233 /locus_tag="Alide_0693" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 729336..729854 /locus_tag="Alide_0693" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature order(729369..729374,729378..729383,729390..729392, 729402..729404,729408..729428,729726..729743, 729759..729764,729768..729773) /locus_tag="Alide_0693" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 730193..731092 /locus_tag="Alide_0694" /db_xref="GeneID:10102723" CDS 730193..731092 /locus_tag="Alide_0694" /inference="protein motif:PFAM:PF00497" /note="KEGG: dia:Dtpsy_0588 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_004125350.1" /db_xref="GI:319761413" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10102723" /translation="MKKHLLAAAITVLAAGSAIAQANDTLAKIKSSGAITLGVRESSG ALAYTLGDGKYVGFHTEMAERVARDLQKKLGLSKLEIKYQPVTSQNRIPLVVNGTVDL ECGSTTNNLARQKDVAFANTTYVEEVRIAVKANSGISDIKDLNGKTIVTTTGTTSVQT LRKNKRAEGMNFREVMGKDHADSFLMLETGRADAFIMDGSILAGNISKSKNPNDFKIV GEALSVEPIACMLRKDDPAFKKAVDESIVAQIKDGTLAKSYDKWFMQPIPPNNTKVGL PLSPATKQAWEHPNDKPMEDYQK" sig_peptide 730193..730261 /locus_tag="Alide_0694" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.767 at residue 23" misc_feature 730295..730987 /locus_tag="Alide_0694" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature 730295..730981 /locus_tag="Alide_0694" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(730319..730321,730454..730456,730529..730531, 730658..730660,730784..730786) /locus_tag="Alide_0694" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(730733..730735,730745..730747,730763..730765) /locus_tag="Alide_0694" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 730865..730882 /locus_tag="Alide_0694" /note="hinge residues; other site" /db_xref="CDD:29040" gene 731196..731948 /locus_tag="Alide_0695" /db_xref="GeneID:10102724" CDS 731196..731948 /locus_tag="Alide_0695" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: dia:Dtpsy_0589 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004125351.1" /db_xref="GI:319761414" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10102724" /translation="MSWDWQVFCQDTITQEVTQSCFGKGGDITYLDWLLSAWGWTVSV SLLALAIALVVGSLIGTLRTLPDSPWVVRLGNAWVEFFRNIPLLVHIFLWYHVIPAIF PAMKSLPGFVLVVFALGFFTSARIAEQVRSGIQALPRGQRYAGMAMGFTTVQYYRYVL LPMAFRIIIPPLTSETMNIFKNSSVAFAVSVSELTMYAMQVQEETSRGIEVYLLVTAL YVVSALAINRIMAFIEKRSRVPGMIAAGGGGH" misc_feature 731400..731873 /locus_tag="Alide_0695" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(731418..731429,731433..731462,731469..731474, 731478..731480,731553..731558,731562..731564, 731568..731570,731577..731582,731586..731588, 731598..731603,731610..731612,731661..731663, 731703..731708,731715..731717,731736..731747, 731754..731759,731796..731801,731829..731834, 731841..731846,731850..731855,731862..731867) /locus_tag="Alide_0695" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(731436..731480,731736..731753) /locus_tag="Alide_0695" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(731478..731480,731538..731540,731754..731756, 731790..731792,731799..731801,731829..731831) /locus_tag="Alide_0695" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(731613..731651,731667..731672,731682..731684) /locus_tag="Alide_0695" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 731950..732621 /locus_tag="Alide_0696" /db_xref="GeneID:10102725" CDS 731950..732621 /locus_tag="Alide_0696" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: dia:Dtpsy_0590 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004125352.1" /db_xref="GI:319761415" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10102725" /translation="MMLHIDWSFLSWELLRGFVLKGFIFSLVLTVIATLGGVLFGTLL ALMRLSGKKWLMAPATIYVNGMRSIPLVMVILWFFLLVPLIIGRPIGAEASAIITFVA FEAAYFSEIMRAGIQSVPRGQVFAGQALGMTYSQNMKLVVLPQAFRNMLPVLLTQTII LFQDTSLVYAIGAYDMLKGFDVAGKNFGRPVEAYLAAAVAYFVICYSLSWAVKRLHKK IAIIR" misc_feature 732004..732603 /locus_tag="Alide_0696" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature 732016..732579 /locus_tag="Alide_0696" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(732064..732069,732076..732081,732094..732096, 732124..732135,732139..732168,732175..732180, 732184..732186,732253..732258,732262..732264, 732268..732270,732277..732282,732286..732288, 732298..732303,732310..732312,732361..732363, 732403..732408,732415..732417,732436..732447, 732454..732459,732496..732501,732529..732534, 732541..732546,732550..732555,732562..732567, 732574..732579) /locus_tag="Alide_0696" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(732142..732186,732436..732453) /locus_tag="Alide_0696" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(732184..732186,732238..732240,732454..732456, 732490..732492,732499..732501,732529..732531) /locus_tag="Alide_0696" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(732313..732351,732367..732372,732382..732384) /locus_tag="Alide_0696" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 732646..733383 /locus_tag="Alide_0697" /db_xref="GeneID:10102726" CDS 732646..733383 /locus_tag="Alide_0697" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_0591 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125353.1" /db_xref="GI:319761416" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102726" /translation="MIELKNVSKWYGSFQVLSDCSTSIQKGEVVVVCGPSGSGKSTLI KTINALEPIQKGEIWVDGTAVHDPKTDLPKLRSRVGMVFQHFELFPHLSVTENLTIAQ IKVLGRSPDDAKKRGLKMLDRVGLTAHKDKFPGQLSGGQQQRVAIARALSMDPIVMLF DEPTSALDPEMVGEVLDVMMGLAHEGMTMMCVTHEMGFAKKVSNRVIFMDVGGKILED CSKEEFFGNPDARQPRTKDFLNKILQH" misc_feature 732646..733374 /locus_tag="Alide_0697" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature 732649..733290 /locus_tag="Alide_0697" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 732745..732768 /locus_tag="Alide_0697" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(732754..732759,732763..732771,732895..732897, 733126..733131,733225..733227) /locus_tag="Alide_0697" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 732886..732897 /locus_tag="Alide_0697" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 733054..733083 /locus_tag="Alide_0697" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 733114..733131 /locus_tag="Alide_0697" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 733138..733149 /locus_tag="Alide_0697" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 733213..733233 /locus_tag="Alide_0697" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene complement(733489..734523) /locus_tag="Alide_0698" /db_xref="GeneID:10102727" CDS complement(733489..734523) /locus_tag="Alide_0698" /EC_number="4.3.1.12" /inference="protein motif:PRIAM:4.3.1.12" /note="KEGG: dia:Dtpsy_0592 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin" /codon_start=1 /transl_table=11 /product="ornithine cyclodeaminase" /protein_id="YP_004125354.1" /db_xref="GI:319761417" /db_xref="InterPro:IPR003462" /db_xref="GeneID:10102727" /translation="MTRFIDLPTLAALVHDMGAAHFLCELADEIHTDFLRWSAFDKTA RTASHSPHGVIELMPVSDDTLYSFKYVNGHPGNPACGLPTVMAFGMLAEVATGLPLLL SELTLATALRTAATSALAAQALARSGSRSMALIGNGAQAEFQALAFHALLGIKELRVF DTAPDATDKLLRNLARTPGLKMIRAASVAEAVRGADIVTTATAAKRHARIITPDMLEP GMHLNAVGGDCPGKTELHPGVLRQARIVVEYAPQSRVEGEIQQLAEDHPVTELWQILS GQASGREHAGQVTVFDSVGFALEDHAALRFIHRQALARGLGADLALVPTDGDPRDLFG RTRSHLRRVV" misc_feature complement(733492..734523) /locus_tag="Alide_0698" /note="ornithine cyclodeaminase; Validated; Region: PRK07589" /db_xref="CDD:181052" misc_feature complement(733597..>734319) /locus_tag="Alide_0698" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(734584..735405) /locus_tag="Alide_0699" /db_xref="GeneID:10102728" CDS complement(734584..735405) /locus_tag="Alide_0699" /inference="protein motif:TFAM:TIGR01484" /note="KEGG: ajs:Ajs_0616 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3" /codon_start=1 /transl_table=11 /product="had-superfamily hydrolase, subfamily iib" /protein_id="YP_004125355.1" /db_xref="GI:319761418" /db_xref="GO:0003824" /db_xref="InterPro:IPR006379" /db_xref="InterPro:IPR013200" /db_xref="GeneID:10102728" /translation="MQPLALWQPPRIAGLLTDIDDTLTTEGAITPDALAALADLKAAG LHVIPITGRPVGWSEPFAQAWPVDAIVAENGAVALLPGSSKQTGSQSAPDRRMQLSKI YQQDDATRAANYARMQQVLADIEARVPGARRATDSPGRECDIAIDHSEFTHLPQAAID ECVRIMRAAGMNATVSSIHINGWYGAHDKLEGARWIVRELLSRALDDELGQWVYVGDS TNDQRMFEHFPHSVGVANIARFVPQLSHLPRYVTQSERGAGFAELARAILNGQAR" misc_feature complement(734593..735270) /locus_tag="Alide_0699" /note="Predicted hydrolases of the HAD superfamily [General function prediction only]; Region: Cof; COG0561" /db_xref="CDD:30907" gene complement(735408..737033) /locus_tag="Alide_0700" /db_xref="GeneID:10102729" CDS complement(735408..737033) /locus_tag="Alide_0700" /inference="protein motif:TFAM:TIGR00503" /note="KEGG: ctt:CtCNB1_0527 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein" /codon_start=1 /transl_table=11 /product="peptide chain release factor 3" /protein_id="YP_004125356.1" /db_xref="GI:319761419" /db_xref="GO:0005525" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004548" /db_xref="InterPro:IPR005225" /db_xref="GeneID:10102729" /translation="MSYASETRRRRTFAIISHPDAGKTTLTEKLLLFSGAIQIAGAVK GRKASRHATSDWMEIEKQRGISVASSVMQMSYRDHVINLLDTPGHKDFSEDTYRVLTA VDSALMVIDAANGVEAQTRRLIEVCRQRDTPIITFVNKMDREVRDPLDILDEVERELG MPCCPMTWPVGQGKNFGGIIDLRTQSMTVFQAGSEKRPEDFEVIPLAEVDKLRARFGQ AYDDAIESMELAVGASIAWDHQEFLAARLTPVFFGSGVNNFGVMEVLNAVVDMSPPPG PRVAFTEVNRQREERTVHPEDESFAGVVFKVQANMDSNHRDRIAFVRVASGKYTPGMK MKVQRTGKELRPTSVVTFMSQRREAVDEAYAGDIIGFTTHGGVQLGDTITDGPSLQFT GLPFFAPEMFMTVVLKNPLRTKQLQQGLMQLGEEGAIQVFKPEAGGNMLLGAVGQLQF EVVQHRLKTEYDCDVRLEGCQYTGARWITADTPVELREFENAYPLRMARDAADTLAYL CTSPYDVRLAQERFPKIHFHPLREHAGLALGTS" misc_feature complement(735435..737033) /locus_tag="Alide_0700" /note="peptide chain release factor 3; Provisional; Region: prfC; PRK00741" /db_xref="CDD:179105" misc_feature complement(736209..737009) /locus_tag="Alide_0700" /note="RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and...; Region: RF3; cd04169" /db_xref="CDD:133369" misc_feature complement(736962..736985) /locus_tag="Alide_0700" /note="G1 box; other site" /db_xref="CDD:133369" misc_feature complement(order(736572..736574,736584..736586, 736692..736697,736764..736769,736821..736826, 736938..736943,736950..736952,736959..736964, 736974..736976,736980..736982)) /locus_tag="Alide_0700" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133369" misc_feature complement(order(736266..736274,736608..736610, 736614..736619,736959..736976)) /locus_tag="Alide_0700" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133369" misc_feature complement(736824..736859) /locus_tag="Alide_0700" /note="Switch I region; other site" /db_xref="CDD:133369" misc_feature complement(736836..736838) /locus_tag="Alide_0700" /note="G2 box; other site" /db_xref="CDD:133369" misc_feature complement(736770..736781) /locus_tag="Alide_0700" /note="G3 box; other site" /db_xref="CDD:133369" misc_feature complement(736719..736775) /locus_tag="Alide_0700" /note="Switch II region; other site" /db_xref="CDD:133369" misc_feature complement(736608..736619) /locus_tag="Alide_0700" /note="G4 box; other site" /db_xref="CDD:133369" misc_feature complement(736266..736274) /locus_tag="Alide_0700" /note="G5 box; other site" /db_xref="CDD:133369" misc_feature complement(735876..736130) /locus_tag="Alide_0700" /note="Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding...; Region: Translation_Factor_II_like; cl02787" /db_xref="CDD:194443" gene complement(737136..737906) /locus_tag="Alide_0701" /db_xref="GeneID:10102730" CDS complement(737136..737906) /locus_tag="Alide_0701" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0646 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004125357.1" /db_xref="GI:319761420" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10102730" /translation="MDPKDKVAIVTGGASGIGRALAQRLAAEGARVVVADLHLEPAQA VADEVKGMAVRCDVSREADIQALVAATRERYGRVDAYFSNAGILGRPGGIELEDPLWE AMWHIHGMAHVWAARAVVPAMAARGEGFFLVTASAAGLLSIVESAPYAVTKHAAVAFA EWLRIAYGRRGVQVACLCPQAVQTAMISDGGGSAGVDGVLPPGQVAGDVLQAMGSGQF LVLPHAEVAQYYAAKAQNPDRWLGGMQKHYARHMQQQG" misc_feature complement(<737346..737885) /locus_tag="Alide_0701" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature complement(737139..737879) /locus_tag="Alide_0701" /note="short chain dehydrogenase; Provisional; Region: PRK05650" /db_xref="CDD:168153" misc_feature complement(order(737352..737357,737361..737372, 737448..737450,737460..737462,737499..737507, 737586..737588,737649..737657,737733..737741, 737793..737801,737856..737867,737871..737873)) /locus_tag="Alide_0701" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature complement(order(737448..737450,737460..737462, 737499..737501,737583..737585)) /locus_tag="Alide_0701" /note="active site" /db_xref="CDD:187544" gene 738148..739578 /locus_tag="Alide_0702" /db_xref="GeneID:10102731" CDS 738148..739578 /locus_tag="Alide_0702" /EC_number="3.3.1.1" /inference="protein motif:TFAM:TIGR00936" /note="TIGRFAM: adenosylhomocysteinase; KEGG: dia:Dtpsy_0597 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding" /codon_start=1 /transl_table=11 /product="adenosylhomocysteinase" /protein_id="YP_004125358.1" /db_xref="GI:319761421" /db_xref="GO:0004013" /db_xref="InterPro:IPR000043" /db_xref="InterPro:IPR015878" /db_xref="InterPro:IPR020082" /db_xref="GeneID:10102731" /translation="MSAVLKASPDSAIADISLADWGRKEIRIAETEMPGLMAVREEFA AQQPLKGARITGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQDHAAAAIAATGVP VFAVKGESLEDYWDYTHRIFEFGPKGSADEGPNMILDDGGDATMLMHLGMRAEKDPSV LANPGSEEEKIVFAAIRAKLAEDATWYSRKSARIIGVTEETTTGVHRLNEMSAKGTLK FRAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKVAVVCGYGDVGKGSAQAL RALSAQVWVTEIDPINALQAAMEGYRVVTMEYAAPRADIFVTTTGNRDVITFEHMQAM KDESIVCNIGHFDNEIQVAKLEAHCRWEEIKPQVDHITFPDGKKIILLAKGRLVNLGC ATGHPSFVMSNSFANQTLAQIELYTRPDAYEAGKVYVLPKILDEKVARLHLKKVGAQL TELTDAQAAYIGVNKSGPYKPDTYRY" misc_feature 738166..739557 /locus_tag="Alide_0702" /note="S-adenosyl-L-homocysteine hydrolase; Provisional; Region: PRK05476" /db_xref="CDD:180110" misc_feature 738193..739551 /locus_tag="Alide_0702" /note="S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado...; Region: AdoHcyase; cd00401" /db_xref="CDD:29522" misc_feature order(738217..738219,738238..738243,738763..738765, 738772..738777,738823..738825,738829..738831, 738844..738846,738856..738858,738865..738870, 738889..738894,738901..738903,738907..738921, 738982..738987,739006..739032,739036..739047, 739054..739059,739108..739119,739150..739158, 739189..739191,739234..739236,739327..739329, 739345..739347,739432..739434,739474..739476, 739483..739488,739492..739500,739504..739506, 739513..739518,739525..739530) /locus_tag="Alide_0702" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:29522" misc_feature order(738322..738324,738328..738330,738334..738336, 738565..738567,738745..738750,738835..738837, 738847..738849,739333..739335) /locus_tag="Alide_0702" /note="active site" /db_xref="CDD:29522" misc_feature order(738748..738756,738850..738852,738937..738939, 738943..738951,739003..739011,739102..739107, 739120..739122,739174..739182,739306..739308, 739312..739314,739333..739335) /locus_tag="Alide_0702" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:29522" gene 739685..740686 /locus_tag="Alide_0703" /db_xref="GeneID:10102732" CDS 739685..740686 /locus_tag="Alide_0703" /inference="protein motif:PFAM:PF01728" /note="PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ" /codon_start=1 /transl_table=11 /product="ribosomal RNA methyltransferase rrmj/ftsj" /protein_id="YP_004125359.1" /db_xref="GI:319761422" /db_xref="GO:0003676" /db_xref="GO:0008168" /db_xref="InterPro:IPR002877" /db_xref="GeneID:10102732" /translation="MRADVFLVEGGHAATRSQAQRLIAAGVQWRLASSLPWNRVAKNG DDIPAGAELQLLDAAEAKYLSRGGLKLEGALAATGIQVAGLRCLDVGQSTGGFTDCLL QHGAAQIVGVDVGQGQLHERLRADPRVIGVEGLNARHMTPETLLEACEEALSERVEAE PEDNDTQPEAPYAWMRNGGLVDDAYDDSQDAKEHEIEAFKAERATRARERAEGRLATL RRRLPGREDVAIPQAFGLVTGDLSFISLTLVLPALVPLLAPGGDLLMLVKPQFELQPG QVGKGGIVRDAGLYAEVERRIRACCADLGLQVIGWHGSAIQGGDGNREFFIHARRAA" misc_feature 739685..>740149 /locus_tag="Alide_0703" /note="Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: COG1189" /db_xref="CDD:31382" misc_feature 739871..>740068 /locus_tag="Alide_0703" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" misc_feature <740480..740677 /locus_tag="Alide_0703" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 740683..741510 /locus_tag="Alide_0704" /db_xref="GeneID:10102733" CDS 740683..741510 /locus_tag="Alide_0704" /EC_number="1.5.1.20" /inference="protein motif:TFAM:TIGR00676" /note="TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dia:Dtpsy_0599 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase" /codon_start=1 /transl_table=11 /product="5,10-methylenetetrahydrofolate reductase" /protein_id="YP_004125360.1" /db_xref="GI:319761423" /db_xref="InterPro:IPR003171" /db_xref="InterPro:IPR004620" /db_xref="GeneID:10102733" /translation="MSLPVSFEFFPPKTPEGADKLRAVRRQLYARAPQFCSVTYGAGG STQEGTFATVRAIIEEGVDAASHFSCIGATKAGVRQQLAELKAMGVKRLVALRGDLPS GYGLGGEFQYASDLVAFIRQETGRDFHIEVAAYPEMHPQARSPEADLQAFATKVRAGA DSAITQYFFNADAYSRFVDDARRLGVEIPIVPGIMPITGSSQLMRFSDACGAEIPRWI RLRLQGFGDDMASIRAFGLDVVGRLCEQLVRAGAPGLHFYTMNQSAATLALCERIGC" misc_feature 740695..741504 /locus_tag="Alide_0704" /note="Methylenetetrahydrofolate reductase; Region: MTHFR; pfam02219" /db_xref="CDD:145399" misc_feature 740695..741501 /locus_tag="Alide_0704" /note="Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine...; Region: MTHFR; cd00537" /db_xref="CDD:29637" misc_feature order(740800..740802,740881..740883,740968..740976, 741016..741021,741079..741081,741085..741087, 741097..741099,741103..741105,741124..741126, 741133..741135,741142..741147,741172..741174, 741178..741180,741454..741456) /locus_tag="Alide_0704" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:29637" gene 741738..742256 /locus_tag="Alide_0705" /db_xref="GeneID:10102734" CDS 741738..742256 /locus_tag="Alide_0705" /inference="protein motif:TFAM:TIGR00413" /note="KEGG: ajs:Ajs_0622 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A" /codon_start=1 /transl_table=11 /product="rare lipoprotein a" /protein_id="YP_004125361.1" /db_xref="GI:319761424" /db_xref="InterPro:IPR005132" /db_xref="InterPro:IPR012997" /db_xref="GeneID:10102734" /translation="MKPERRPGEGSGAPALRAPEPEAPVLLASGQASWYADSLHGRRT ANGERYDREEFTAAHRSLPFGARLCVRSLVNGRTVIVRVNDRGPFTPGRIIDLSRAAA EELGMVGLGIKPVELWQLGADDEACPESLEPAAQGSGLGLDAEAAAKALQQPAPKAKA PAARKPRRNKRR" misc_feature 741825..742085 /locus_tag="Alide_0705" /note="Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; cl04011" /db_xref="CDD:186611" gene complement(742257..743174) /locus_tag="Alide_0706" /db_xref="GeneID:10102735" CDS complement(742257..743174) /locus_tag="Alide_0706" /inference="protein motif:PFAM:PF04378" /note="PFAM: protein of unknown function DUF519; KEGG: dia:Dtpsy_0602 protein of unknown function DUF519" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125362.1" /db_xref="GI:319761425" /db_xref="InterPro:IPR007473" /db_xref="GeneID:10102735" /translation="MRLATIGRMFSYRHAFHAGNHADVLKHTVLIATLQHLLQKDAAL TVLDTHAGAGLYRLDGDYASTSAESADGILRLVPPAAPAALAPALQDYVDMVRAFNQG EATRVYPGSPFIAQRLLRAQDRLKLFELHPTDARALAGNVAQLDAGRQVAVLAQDGFE GARQFLPPPSRRALVLCDPSYEIKSDYARVQDMLQDALKRFATGVYAVWYPIIPRPEA HELPRRLKTLAQKAGKSWLHATLTVKSGKTAPAGTAPGRRPGLPASGMFLINPPFTLD AALRAALPQMAELLAQDRHAAWTLEGGAP" misc_feature complement(742272..743144) /locus_tag="Alide_0706" /note="Protein of unknown function (DUF519); Region: DUF519; cl04492" /db_xref="CDD:123118" gene 743351..745147 /locus_tag="Alide_0707" /db_xref="GeneID:10102736" CDS 743351..745147 /locus_tag="Alide_0707" /inference="protein motif:PFAM:PF00069" /note="KEGG: ajs:Ajs_0624 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain" /codon_start=1 /transl_table=11 /product="serine/threonine-protein kinase-like domain protein" /protein_id="YP_004125363.1" /db_xref="GI:319761426" /db_xref="GO:0004672" /db_xref="GO:0005524" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR017442" /db_xref="InterPro:IPR020635" /db_xref="GeneID:10102736" /translation="MSAVPRPSHADALPPGTRLGEFEVQALLGVGGFGMVYQAFDHSL QRCVAIKEYMPASLAGRADGHSLWVRSSSNEQSFQAGLASFVDEARLLARFDHPSLVK VFRFWEANHTAYMVMPLYRGMTLKQARAHMRTPPPEAWLRTLLWSVTSALRVLHDGQT LHRDISPDNIFLQDHGPPVLLDLGAARHAIGGGSHGHAAVLKVHYAPLEQYADASAEL GQGPWSDLYALGAVVHGCLCNDTPLPATLRAVRDRMVPFPRVARTVRRQFGIEYSRPF VEAIAQCLALQPQERPQSVADFVQAMGMAEAPAGLESFDFRDALGDIWVEPQSKDAQG VAVPMIDAMTLSQPQSAPLAVSAAQRAGEASTAVADAGAAPAFADTQVAPPPSRERPP RRRHRVRAQGRGHGTAAGQPGKADISSGAAAQVHRTGGQAPMMWAMAGSVAAMALVGS LWWMQRERAPHRTPESEIITELAEPAPPPGLMRATHEVTASALLHPADMGLAPAAEVA RPMPARREGEIPAPPPAPVAVQQAMPAPAPPAPRAAPPGPDEACASAGFFARPMCIHR ECQKAGMARHPVCVENRLRHEEQELQRQLYAQ" misc_feature 743414..744226 /locus_tag="Alide_0707" /note="Protein kinase domain; Region: Pkinase; pfam00069" /db_xref="CDD:189373" misc_feature 743432..744046 /locus_tag="Alide_0707" /note="Catalytic domain of Protein Kinases; Region: PKc; cd00180" /db_xref="CDD:173623" misc_feature order(743432..743446,743456..743458,743495..743497, 743501..743503,743651..743653,743699..743710, 743720..743722,743726..743728,743840..743842, 743846..743848,743852..743857,743861..743863, 743894..743896,743903..743905,743951..743962) /locus_tag="Alide_0707" /note="active site" /db_xref="CDD:173623" misc_feature order(743432..743446,743456..743458,743495..743497, 743501..743503,743651..743653,743699..743710, 743720..743722,743840..743842,743846..743848, 743852..743857,743861..743863,743894..743896) /locus_tag="Alide_0707" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature order(743444..743446,743720..743722,743726..743728, 743840..743842,743846..743848,743852..743854, 743903..743905,743951..743962) /locus_tag="Alide_0707" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature order(743891..743911,743951..743962) /locus_tag="Alide_0707" /note="activation loop (A-loop); other site" /db_xref="CDD:173623" gene 745253..745720 /locus_tag="Alide_0708" /db_xref="GeneID:10102737" CDS 745253..745720 /locus_tag="Alide_0708" /inference="protein motif:TFAM:TIGR01066" /note="KEGG: aav:Aave_4053 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13" /codon_start=1 /transl_table=11 /product="ribosomal protein l13" /protein_id="YP_004125364.1" /db_xref="GI:319761427" /db_xref="GO:0003735" /db_xref="InterPro:IPR005822" /db_xref="InterPro:IPR005823" /db_xref="GeneID:10102737" /translation="MEKDRQTLSEEKLMTTFSAKPAEVVHEWFVIDATDKVLGRVASE VALRLRGKHKAIYTPHVDTGDFIVVVNASKLKVTGTKSLDKVYYRHSGYPGGITATNF RDLQAKHPGRALEKAVKGMLPKGPLGYAMIKKLKVYGGAEHPHSAQQPKPLAI" misc_feature 745334..745675 /locus_tag="Alide_0708" /note="Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392" /db_xref="CDD:88313" misc_feature order(745361..745363,745367..745372,745379..745381, 745388..745390,745400..745402,745484..745486, 745490..745492,745574..745579,745595..745603, 745607..745615,745619..745627,745631..745633, 745637..745639,745649..745651,745658..745663) /locus_tag="Alide_0708" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88313" misc_feature 745577..745579 /locus_tag="Alide_0708" /note="L3 interface [polypeptide binding]; other site" /db_xref="CDD:88313" gene 745730..746122 /locus_tag="Alide_0709" /db_xref="GeneID:10102738" CDS 745730..746122 /locus_tag="Alide_0709" /inference="protein motif:PFAM:PF00380" /note="PFAM: ribosomal protein S9; KEGG: ctt:CtCNB1_0541 ribosomal protein S9" /codon_start=1 /transl_table=11 /product="ribosomal protein s9" /protein_id="YP_004125365.1" /db_xref="GI:319761428" /db_xref="GO:0003735" /db_xref="InterPro:IPR000754" /db_xref="InterPro:IPR020574" /db_xref="GeneID:10102738" /translation="MIGEWNNGTGRRKSSVARVFLKKGSGKITVNGKDIQQYFGRETS IMITKQPLVLTGNVEAFDIQINVHGGGESGQAGAARHGITRALIDYDAALKPQLSAAG FVTRDAREVERKKVGLHSARRAKQFSKR" misc_feature 745730..746119 /locus_tag="Alide_0709" /note="Ribosomal protein S9/S16; Region: Ribosomal_S9; cl00334" /db_xref="CDD:193774" gene 746286..746660 /locus_tag="Alide_0710" /db_xref="GeneID:10102739" CDS 746286..746660 /locus_tag="Alide_0710" /inference="protein motif:TFAM:TIGR00049" /note="KEGG: dia:Dtpsy_0608 iron-sulfur cluster insertion protein ErpA; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly accessory protein" /protein_id="YP_004125366.1" /db_xref="GI:319761429" /db_xref="GO:0005198" /db_xref="GO:0051536" /db_xref="InterPro:IPR000361" /db_xref="InterPro:IPR016092" /db_xref="InterPro:IPR017870" /db_xref="GeneID:10102739" /translation="MSAVATPADTEMPAPILFTDSAAAKVAELIAEEGNPDLKLRVFV QGGGCSGFQYGFTFDEITNEDDTTMTKNGVSLLIDAMSYQYLVGAEIDYKEDLQGAQF VIKNPNAETTCGCGSSFSVQDQ" misc_feature 746304..746648 /locus_tag="Alide_0710" /note="Iron-sulphur cluster biosynthesis; Region: Fe-S_biosyn; cl00400" /db_xref="CDD:189093" gene complement(746737..747225) /locus_tag="Alide_0711" /db_xref="GeneID:10102740" CDS complement(746737..747225) /locus_tag="Alide_0711" /inference="similar to AA sequence:KEGG:Rfer_0842" /note="KEGG: rfr:Rfer_0842 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125367.1" /db_xref="GI:319761430" /db_xref="GeneID:10102740" /translation="MLTAYAGWDSPDFTFQDFRYFLNGKQIAGDSRSFVQRIESRGYS GPGEESIRVGDIVYVKWRHKPTGTVYENTIDLRGRLPAPIKEGGALYFVLAHETVHVY LVGPPQPWENRKPIYGCDKLKKIGKAEPTPDNRARAYNCADKVWKVYPEQKLINVPLE QP" gene complement(747617..748741) /locus_tag="Alide_0712" /db_xref="GeneID:10102741" CDS complement(747617..748741) /locus_tag="Alide_0712" /inference="protein motif:PFAM:PF03702" /note="PFAM: protein of unknown function UPF0075; KEGG: dia:Dtpsy_0609 anhydro-N-acetylmuramic acid kinase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125368.1" /db_xref="GI:319761431" /db_xref="GO:0005524" /db_xref="InterPro:IPR005338" /db_xref="GeneID:10102741" /translation="MDSRARWYFGLMSGTSLDGIDGVLAEFSEGKCRVALHGSAPLAP DLRAELLALNTSGNDELHRAALAANALARGYAGLVHGLLAQAGLPPEAVHAIGAHGQT VRHRPQAFGGTGYTLQLNNPALLAECTGITVVADFRSRDVAAGGQGAPLVPAFHQGVF GQAGRTVAVLNLGGISNLSILRAGGGVLGFDCGPANALMDHWCERHTGRPYDAAGAWA RSGRPIGALLHAMLAEPFLAAPPPKSTGRDLFNPRWLARQLDGTGSGDASPQDVQATL AEFTARSCAQELRRHAPECGLLIVCGGGALNQYLMERLQALLPGVGVEDSGCHGLPPL QVEAAAFAWLARQCMAGEAANLPSVTGARGARILGAIYPA" misc_feature complement(747620..748726) /locus_tag="Alide_0712" /note="Uncharacterised protein family (UPF0075); Region: UPF0075; cl04217" /db_xref="CDD:194801" gene complement(748757..750139) /locus_tag="Alide_0713" /db_xref="GeneID:10102742" CDS complement(748757..750139) /locus_tag="Alide_0713" /inference="protein motif:PFAM:PF01551" /note="PFAM: Peptidase M23; KEGG: ajs:Ajs_0631 peptidase M23B" /codon_start=1 /transl_table=11 /product="peptidase m23" /protein_id="YP_004125369.1" /db_xref="GI:319761432" /db_xref="InterPro:IPR016047" /db_xref="GeneID:10102742" /translation="MPGVTLLNNGLTTACLLLLDRLKQSVQKHPKRITAAVATLLLTG GGGAFAVASFAPDPADLPVTTVSLPVQSLAGDEQLSSLVDMPPFALYRSDTTRGSDTA ESILQRLGVADPAAAAFLRGDGLVRQQLLGRSGRSISAETTDDHRLVRLTARWAPDEG SQFQRLVVERKGDGSFASRTETAPLTVGSRLAGGIIRSSLFAATDAASIPDAVAIQLA EVFSGDIDFRRALRKDDRFSVVYETLEADGEPLRSGRVLSAEFQNGGKTYSAIWFQPP GAGKGSYYTLDGQSMRRAYLTSPVEFSRVSSGFAMRLHPIHKTWRAHLGTDFAAPTGT AVRTVGDGVVDFAGVQNGYGNVIYVKHRNQHVTVYAHLSRIDVKKGQAVDQGQKIGAV GATGWATGPHLHFEFRVNGEHRDPMTIARESESAQPVPVAARPAFDRLAANMRVQLSS AEQIMQASAE" misc_feature complement(748883..>749842) /locus_tag="Alide_0713" /note="putative peptidase; Provisional; Region: PRK11649" /db_xref="CDD:183257" misc_feature complement(748892..749179) /locus_tag="Alide_0713" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene 750311..751543 /locus_tag="Alide_0714" /db_xref="GeneID:10102743" CDS 750311..751543 /locus_tag="Alide_0714" /inference="protein motif:TFAM:TIGR00234" /note="TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; KEGG: ajs:Ajs_0632 tyrosyl-tRNA synthetase; SMART: RNA-binding S4 domain protein" /codon_start=1 /transl_table=11 /product="tyrosyl-tRNA synthetase" /protein_id="YP_004125370.1" /db_xref="GI:319761433" /db_xref="GO:0000166" /db_xref="GO:0004831" /db_xref="GO:0005524" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002305" /db_xref="InterPro:IPR002307" /db_xref="InterPro:IPR002942" /db_xref="GeneID:10102743" /translation="MNQSAVTTFPVTDEVGRALEVSLRGVDELLPRQEWVQKLARSQA TGQPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHQVIFLIGDFTTLIGDPSGRNS TRPPLTAEQIKVNAETYYTQAAKVLDPARTEIRYNSEWSDALGARGMIELSAKYTVAR MMERNDFHQRFTDGSSISLHEFLYPLLQGYDSVALRSDLELGGTDQKFNLLMGRHLQQ EYGQEPQCVLTMPLLVGLDGVDKMSKSKNNYIGITEDANTMFAKVLSISDALMWDWYT LLSFKSLAEIAALKKEVEAGRNPKDAKVMLAKEITARFHSAAAADAAEQDFNNRSKGG IPDEIPELSLSGAPLGIGALLKQAGLAPSTSEANRLIDGGGVRVDGGVVSDKGLRLGA GTYVVQVGKRKFARVALG" misc_feature 750380..751537 /locus_tag="Alide_0714" /note="tyrosyl-tRNA synthetase; Validated; Region: PRK05912" /db_xref="CDD:180311" misc_feature 750455..751249 /locus_tag="Alide_0714" /note="catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805" /db_xref="CDD:173902" misc_feature order(750464..750466,750470..750478,750497..750499, 750503..750508,750860..750862,750872..750874, 750881..750883,750908..750910,750914..750919, 750926..750928,751004..751009,751031..751042) /locus_tag="Alide_0714" /note="active site" /db_xref="CDD:173902" misc_feature 750497..750508 /locus_tag="Alide_0714" /note="HIGH motif; other site" /db_xref="CDD:173902" misc_feature order(750578..750580,750587..750592,750746..750751, 750755..750763,750767..750772,750776..750787, 750791..750796,750848..750850,750854..750859, 750866..750871) /locus_tag="Alide_0714" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173902" misc_feature 751031..751045 /locus_tag="Alide_0714" /note="KMSKS motif; other site" /db_xref="CDD:173902" gene complement(751605..752561) /locus_tag="Alide_0715" /db_xref="GeneID:10102744" CDS complement(751605..752561) /locus_tag="Alide_0715" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0634 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125371.1" /db_xref="GI:319761434" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102744" /translation="MPSPSHLRTRPVAVGHWRAFLAVARHLNFRAAADELALTQSAVS RQIQALEDEVGVPLFLRHTRAVELTGAGVQLHRAVAPALDRLDAAVRQVRQMAGRRSV AIATWASFASMWLIPRMEEFQCAHPDIDIRIDTSDSVVDLDTADVDLALRWATPGGSA PGAERLFGEQLAVVASPWLLKSMPPVRQPADVARFALIEAGDAHRQPYFDWITWGRWF EANGLGGLQPQRWLYLNYAQQIAQAALAGQGLALARMPLVAQSLAAGDLVEVLPGHRL DAPLAYWLVMGPRSGERPEVQAFRAWLLLQAEATRAAVGEPD" misc_feature complement(752346..752516) /locus_tag="Alide_0715" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(751626..752510) /locus_tag="Alide_0715" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(751653..752252) /locus_tag="Alide_0715" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(751824..751829,751833..751838, 751854..751871,752157..752177,752181..752183, 752193..752195,752202..752207,752211..752216)) /locus_tag="Alide_0715" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 752622..754046 /locus_tag="Alide_0716" /db_xref="GeneID:10102745" CDS 752622..754046 /locus_tag="Alide_0716" /EC_number="2.3.1.157" /inference="protein motif:TFAM:TIGR01173" /note="TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: ajs:Ajs_0636 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein" /codon_start=1 /transl_table=11 /product="udp-n-acetylglucosamine pyrophosphorylase" /protein_id="YP_004125372.1" /db_xref="GI:319761435" /db_xref="GO:0000287" /db_xref="GO:0003977" /db_xref="GO:0019134" /db_xref="InterPro:IPR001228" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR005882" /db_xref="GeneID:10102745" /translation="MTQLDIIIMAAGKGTRMKSRIPKVLQRLAGRPLLHHVLDQAASL QARRVVVVTGHGATEVEAACAGGAGLRAGFDLQCVRQEPQLGTGHAVQQAVPRLAGDG TVVVLSGDVPLTQAATLRALVEASGGERLALLTVGLPDPSGYGRIVRGAGGTVLRIVE HKDASEAERAIGEVYSGIMAVPARLLAAWLARLTNDNAQGEYYLTDVVAMAVADGVPV VAHRITDALQVAGVNSPVQLAELERAHQQRQAQALMEQGVRLADPARFDLRDDARGGR AQLVCGQDVEIDVGCIFTGRVEIGEGARIGAYCHIGNAVIGAGAVIHPFTHIDGEKAG ASVGEGALVGPFARLRPGAQLGREVHVGNFVEIKNSQLADGAKANHLAYLGDATVGER VNYGAGSITANYDGANKHRTVIEADVHVGSNCVLVAPVTIGAGGTVGGGSTITKDTPP GALSVARGKQVSIAGWKRPARQAK" misc_feature 752631..754037 /locus_tag="Alide_0716" /note="UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Region: glmU; TIGR01173" /db_xref="CDD:162235" misc_feature 752637..753335 /locus_tag="Alide_0716" /note="N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540" /db_xref="CDD:133020" misc_feature order(752646..752654,752775..752777,752880..752882, 752889..752891,752943..752945,752949..752951) /locus_tag="Alide_0716" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133020" misc_feature order(752949..752951,753318..753320) /locus_tag="Alide_0716" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133020" misc_feature 753390..754001 /locus_tag="Alide_0716" /note="N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353" /db_xref="CDD:100044" misc_feature order(753669..753671,753717..753719,753723..753725, 753759..753761,753768..753770,753801..753812, 753825..753833,753846..753848,753876..753878, 753882..753887,753936..753941,753990..753992) /locus_tag="Alide_0716" /note="active site" /db_xref="CDD:100044" misc_feature order(753669..753671,753717..753719,753723..753725, 753759..753761,753768..753770,753801..753809, 753828..753830,753846..753848) /locus_tag="Alide_0716" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100044" misc_feature order(753810..753812,753825..753827,753831..753833, 753882..753887,753936..753941,753990..753992) /locus_tag="Alide_0716" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100044" gene 754043..754825 /locus_tag="Alide_0717" /db_xref="GeneID:10102746" CDS 754043..754825 /locus_tag="Alide_0717" /inference="protein motif:PFAM:PF02518" /note="KEGG: ajs:Ajs_0637 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004125373.1" /db_xref="GI:319761436" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:10102746" /translation="MTAEGGATRGGTAQDRLQAELDEARRQMAAMAAAHEAFLRGVSH DLRAPLRHVTSYGALVRELLQELPAQYPQVEEALGFLATMDASARRMGLMIDGLQAIA RAGRAPLRLQAVDVGAAVQQARALLGGAGDGVQWCVAPAMPAVRADAELFGQLLAQLL GNALKFTRGVARARIAVHAEPDGQGRVRITVQDNGAGFDGARAQQLFGVFQRMHREAD FEGVGAGLALCAAIAQRHGATITAAAAPGAGCSIRLDWPGAA" misc_feature 754154..754351 /locus_tag="Alide_0717" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(754154..754156,754166..754168,754178..754180, 754187..754189,754199..754201,754208..754210, 754280..754282,754292..754294,754301..754303, 754313..754315,754322..754324,754334..754336) /locus_tag="Alide_0717" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 754172..754174 /locus_tag="Alide_0717" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature <754562..>754750 /locus_tag="Alide_0717" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(754613..754615,754619..754621,754625..754627, 754631..754636,754709..754720) /locus_tag="Alide_0717" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature order(754625..754627,754631..754633,754709..754711, 754715..754717) /locus_tag="Alide_0717" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(754854..755189) /locus_tag="Alide_0718" /db_xref="GeneID:10102747" CDS complement(754854..755189) /locus_tag="Alide_0718" /inference="similar to AA sequence:KEGG:Dtpsy_0617" /note="KEGG: dia:Dtpsy_0617 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="merr family transcriptional regulator" /protein_id="YP_004125374.1" /db_xref="GI:319761437" /db_xref="GeneID:10102747" /translation="MATTPNFLDNALAELLDEQARLTLDDLARSCCMAPGWVIERLEA GLLHGEQAGGHWQFTSATVVRARRLARLESTFDADPELAALTADLIEEVSALRQRLHQ LEARLGLMP" gene complement(755192..756187) /locus_tag="Alide_0719" /db_xref="GeneID:10102748" CDS complement(755192..756187) /locus_tag="Alide_0719" /inference="protein motif:PFAM:PF00226" /note="KEGG: dia:Dtpsy_0618 heat shock protein DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein" /codon_start=1 /transl_table=11 /product="heat shock protein dnaj domain protein" /protein_id="YP_004125375.1" /db_xref="GI:319761438" /db_xref="GO:0031072" /db_xref="GO:0051082" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR002939" /db_xref="InterPro:IPR003095" /db_xref="GeneID:10102748" /translation="MEFKDYYKILGVERDASAADIKKAYRKLARKYHPDVSKEADAAA RMAEVNEANAVLSDPEKRAAYDSLGREAPHRPGQDFRPPPNWDAGFEFTGAPGAEGMD SAEFSDFFEQLFGHAARAQRAQRGGGAQARGAEQPRQRGRDHHASIELDLRDAYHGAQ RTLTLHGARLDEGGHLVNEERQLQVTIPKGVREGQLIRLTGQGGPGLGGAPAGDLFLE VRFKPDARWRAEDRDVYQSVSVAPWEAELGGAIEVQTPGGNTVEVTVPPHWKSGRKLR LKGRGIPAATPGDLYLELHVSLPAAATPAQQQAYRAFAQAFPQFQPRAAHGTQGA" misc_feature complement(755294..756187) /locus_tag="Alide_0719" /note="chaperone protein DnaJ; Provisional; Region: PRK14299" /db_xref="CDD:184613" misc_feature complement(756014..756175) /locus_tag="Alide_0719" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cd06257" /db_xref="CDD:99751" misc_feature complement(order(756035..756040,756047..756052, 756059..756061,756083..756091)) /locus_tag="Alide_0719" /note="HSP70 interaction site [polypeptide binding]; other site" /db_xref="CDD:99751" misc_feature complement(755300..755491) /locus_tag="Alide_0719" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" gene complement(756292..756783) /locus_tag="Alide_0720" /db_xref="GeneID:10102749" CDS complement(756292..756783) /locus_tag="Alide_0720" /inference="protein motif:PFAM:PF01037" /note="KEGG: ajs:Ajs_0640 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type" /codon_start=1 /transl_table=11 /product="transcription regulator asnc-type-like protein" /protein_id="YP_004125376.1" /db_xref="GI:319761439" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000485" /db_xref="InterPro:IPR019887" /db_xref="InterPro:IPR019888" /db_xref="GeneID:10102749" /translation="MEYDFTPDAIDLQLLDLLQSDASLSNQALAERVHVSPPTCLRRV RRLQASGLIERQVALLQPDRLAALQGHGLTAIVEVSLDRQGAEHLAAFEARAVADPAV QQCWRVSPGPDFVLVVHARDMPGYLALSQRLFTQDANVRNVKAFFATHRAKFETKLPV ALS" misc_feature complement(756424..>756693) /locus_tag="Alide_0720" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 756918..758828 /locus_tag="Alide_0721" /db_xref="GeneID:10102750" CDS 756918..758828 /locus_tag="Alide_0721" /inference="protein motif:TFAM:TIGR01135" /note="KEGG: dia:Dtpsy_0620 glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS)" /codon_start=1 /transl_table=11 /product="glucosamine/fructose-6-phosphate aminotransferase, isomerizing" /protein_id="YP_004125377.1" /db_xref="GI:319761440" /db_xref="GO:0004360" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR001347" /db_xref="InterPro:IPR005855" /db_xref="InterPro:IPR017932" /db_xref="GeneID:10102750" /translation="MCGIVGAVSTRNIVPILVQGLQRLEYRGYDSCGVAVHEASLGGQ PAGGLRRARSTARVAELLAQVAHDGLQGATGIAHTRWATHGAPAVHNAHPHFSHGAGE APADAARAGRVALVHNGIIENHEELRAQLQARGYVFSSQTDTEVIAHLVDSLYDGDLF QAVRSAAGKLRGAFAIAVIHKDEPHRVVGARAGSPLVLGVGDGENFLASDAMALAGVT DQIVYLEEGDLVDLQLGRYWITGPDGQPLPADSRPVRTVHAHSGAAELGPYRHYMQKE IFEQPRAIADTLEGLQGIAPELFDGAPRHGQPGAAAWRVFKEIDSVLILACGTSYYSG CAAKYWLESIAAIPTQVEVASEYRYRTSVPNPRTLVVTISQSGETADTLAALRHAQGL GMRHTLTVCNVATSAMVRECQLAYVTRAGVEIGVASTKAFTTQLAGLFLLTLALAQAK GRLSEESEEQYLKAMRHLPAALQAVLALEPQVISWAEDFAKMENALFLGRGIHYPIAL EGALKLKEISYIHAEAYPAGELKHGPLALVTSSMPVVTVAPNDELLEKLKSNMQEVRA RGGVLYVLADARTNIESSEGVHVIRMPEHYGPLSPLLHVVPLQLLAYHTACARGTDVD KPRNLAKSVTVE" misc_feature 756918..758825 /locus_tag="Alide_0721" /note="glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331" /db_xref="CDD:178980" misc_feature 756921..757613 /locus_tag="Alide_0721" /note="Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate...; Region: GFAT; cd00714" /db_xref="CDD:48478" misc_feature order(756921..756923,756996..756998,757155..757160, 757164..757169,757194..757196,757269..757274, 757344..757349) /locus_tag="Alide_0721" /note="glutaminase active site [active]" /db_xref="CDD:48478" misc_feature 757881..758207 /locus_tag="Alide_0721" /note="SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008" /db_xref="CDD:88405" misc_feature order(757896..757901,757929..757934,757941..757946, 757965..757967,757971..757973,757983..757985, 757992..757994,758058..758060) /locus_tag="Alide_0721" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88405" misc_feature order(757902..757907,758037..758045) /locus_tag="Alide_0721" /note="active site" /db_xref="CDD:88405" misc_feature 758355..758819 /locus_tag="Alide_0721" /note="SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009" /db_xref="CDD:88406" misc_feature order(758418..758420,758460..758462,758472..758474, 758478..758480,758484..758486,758490..758492, 758502..758504,758508..758516,758520..758531, 758580..758585,758595..758597,758601..758606, 758796..758801,758814..758816) /locus_tag="Alide_0721" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88406" misc_feature order(758454..758456,758463..758465) /locus_tag="Alide_0721" /note="active site" /db_xref="CDD:88406" gene 759177..761135 /locus_tag="Alide_0722" /db_xref="GeneID:10102751" CDS 759177..761135 /locus_tag="Alide_0722" /inference="similar to AA sequence:KEGG:Veis_4900" /note="manually curated; KEGG: vei:Veis_4900 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125378.1" /db_xref="GI:319761441" /db_xref="GeneID:10102751" /translation="MSNLKYPADLAVTVQDFQASGWQQALDGVQRFTDYWTSLSRAAE LASSGADAKKTKVLWLLADAASMRLIPASTNQPFDAMLRTQDRRSALPDDFTADDIAF FNDALPHVADARLRARLADLVWLRKGGPRGPSAALTAIDAYRETSLTPDGWLDGGRQS WSRALRLALSLRTAAGTRFAEMEFAMRAAFDAADWPNGRFFAHSLAKVMHEYKVSEND RPAVAAKLAALGAEAEAAGHFQGAGTYFDAASSWYAAAGDKVSAARMTAAHAESWVKQ AEGRGERGSQPSALVAAKFYENAIQVLRDVERPQRAVLRVDERIEELRFLQIDAGERS LGEMGLVRTPGVSIEDLVRSSRQAVAGKPVLEAFADFCSLYEGVDLERAREGVLQRMR DSPLQALFGKTILSRDGRVIAKRPAMGMDVQLSPSDEESIFAGMVEEHMLLLQFVVQG QIVPAWQQLTLEHRVPEGEFLELARNASIVPKGRAALFAKGLYAGYDGDFVTALHVLV PQLEHLVRHHLKAAGAITAHLDPEGLEKEVGLSSLMEMPEAGKVFGAPLCFEIKAVFC SAYGPNLRNELAHGLLDDEACLSIPGVYAWWFMFRLVFVDFWNSQHQSLAAALAQDRE RQQAQAAAQADAEVGGASSAPPAPSESR" gene complement(761301..761492) /locus_tag="Alide_0723" /pseudo /db_xref="GeneID:10102752" gene complement(761494..763231) /locus_tag="Alide_0724" /pseudo /db_xref="GeneID:10102753" gene complement(763505..764419) /locus_tag="Alide_0725" /db_xref="GeneID:10102754" CDS complement(763505..764419) /locus_tag="Alide_0725" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004125379.1" /db_xref="GI:319761442" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10102754" /translation="MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSAR AQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIVVARCTVERLMRAMGLQGARRG RAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAASDTSTKVST" misc_feature complement(763523..764359) /locus_tag="Alide_0725" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(763688..764044) /locus_tag="Alide_0725" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(764416..764739) /locus_tag="Alide_0726" /db_xref="GeneID:10102755" CDS complement(764416..764739) /locus_tag="Alide_0726" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004125380.1" /db_xref="GI:319761443" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10102755" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature complement(764482..764739) /locus_tag="Alide_0726" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 764797..765249 /locus_tag="Alide_0727" /pseudo /db_xref="GeneID:10102756" gene complement(765493..765747) /locus_tag="Alide_0728" /db_xref="GeneID:10102757" CDS complement(765493..765747) /locus_tag="Alide_0728" /inference="similar to AA sequence:KEGG:CtCNB1_4017" /note="KEGG: ctt:CtCNB1_4017 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125381.1" /db_xref="GI:319761444" /db_xref="GeneID:10102757" /translation="MKNAFTTATLSMCLALGATSVFAADSISKDSMGKGQMGMEKSSM DKSASHKDAMGMNKGAMTKDGKSSMDQMGKGGMSKDKMSK" sig_peptide complement(765676..765747) /locus_tag="Alide_0728" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 24" gene complement(765821..766609) /locus_tag="Alide_0729" /db_xref="GeneID:10102758" CDS complement(765821..766609) /locus_tag="Alide_0729" /inference="protein motif:PFAM:PF00174" /note="PFAM: oxidoreductase molybdopterin binding; KEGG: ctt:CtCNB1_4018 oxidoreductase, molybdopterin binding protein" /codon_start=1 /transl_table=11 /product="oxidoreductase molybdopterin binding protein" /protein_id="YP_004125382.1" /db_xref="GI:319761445" /db_xref="GO:0009055" /db_xref="InterPro:IPR000572" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102758" /translation="MSTPTSIWHRDNAEAVVADARKLLARQLPQASRRQFLTRGLTLG GLGLLSGCSIDDNATAEAALMRISRFNDRVQGWLFDPSRLAPTYLDSMITRPFPFNAF YGEGEVPQVDGDGFQLEVTGLVADKRRWRLHELRALPQYTQVTRHICVEGWSAIGKWG GPRFGDFLRAVGADLGARYVGFECADGYYTSIDMATALHPQTLLALDWDGQPLPPKYG FPMKLRMPTKLGYKNPKHIRAIFVSNTFNRGYWEDQGYNWFGGS" misc_feature complement(765830..766360) /locus_tag="Alide_0729" /note="Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199" /db_xref="CDD:185822" misc_feature complement(order(765902..765907,765911..765913, 765920..765922,765944..765946,765959..765961, 766046..766048,766163..766165,766295..766297, 766301..766303,766307..766309)) /locus_tag="Alide_0729" /note="Moco binding site; other site" /db_xref="CDD:29401" misc_feature complement(766163..766165) /locus_tag="Alide_0729" /note="metal coordination site [ion binding]; other site" /db_xref="CDD:29401" gene complement(766606..767262) /locus_tag="Alide_0730" /db_xref="GeneID:10102759" CDS complement(766606..767262) /locus_tag="Alide_0730" /inference="similar to AA sequence:KEGG:CtCNB1_4019" /note="KEGG: ctt:CtCNB1_4019 transmembrane hydrogenase cytochrome" /codon_start=1 /transl_table=11 /product="transmembrane hydrogenase cytochrome" /protein_id="YP_004125383.1" /db_xref="GI:319761446" /db_xref="InterPro:IPR000516" /db_xref="GeneID:10102759" /translation="MSSPSPQPSKRNKPLQPLWLRVTHWLNAVAVLVMVTSGWRIYNA SPIFDFVFPADITLGGWLGGALQWHFAGMWLFVLNGLAYLLLNLATGRFARRLLPVTA RGILRDAWLALTARLSHGDMGRYNQMQRAAYLFAIADLVVLVLSGLVVWKSVQFPLLR ELLGGYDTARHIHFYGMAAIVGFACVHLVMVVLVPRSLLAMLLGRSTLRRTTAKEATP " misc_feature complement(766636..767220) /locus_tag="Alide_0730" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene 767358..768068 /locus_tag="Alide_0731" /db_xref="GeneID:10102760" CDS 767358..768068 /locus_tag="Alide_0731" /inference="protein motif:PFAM:PF00072" /note="KEGG: pol:Bpro_0543 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004125384.1" /db_xref="GI:319761447" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10102760" /translation="MNTPKRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAV ERGGWHALVLDLMLPGVDGLEICRRARAMTYYVPIIITSARSSEVHRILGLELGADDY LAKPFSVMELVARVRALLRRSEALARNAKLEAGVLSLGGLSIDPIAREARVDGQSVEL TPREFDLLYFFARQPGKVFSRLDLLNQVWGYRHDGYEHTVNTHINRLRIKIERNPADP KRILTVWGRGYKLAEDAL" misc_feature 767370..768062 /locus_tag="Alide_0731" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 767379..767681 /locus_tag="Alide_0731" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(767388..767393,767520..767522,767544..767546, 767604..767606,767661..767663,767670..767675) /locus_tag="Alide_0731" /note="active site" /db_xref="CDD:29071" misc_feature 767520..767522 /locus_tag="Alide_0731" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(767529..767534,767538..767546) /locus_tag="Alide_0731" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 767670..767678 /locus_tag="Alide_0731" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 767766..768050 /locus_tag="Alide_0731" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(767838..767840,767895..767900,767952..767954, 767961..767963,767985..767990,768024..768026, 768039..768041) /locus_tag="Alide_0731" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 768065..769546 /locus_tag="Alide_0732" /db_xref="GeneID:10102761" CDS 768065..769546 /locus_tag="Alide_0732" /inference="protein motif:PFAM:PF02518" /note="KEGG: vap:Vapar_2987 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004125385.1" /db_xref="GI:319761448" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:10102761" /translation="MTVQSLSLSQRLSAVFVLLLLACCAASVVLQMRGSERHEQEVIQ RLSLDLAPQIARYPELMEPRGFNPSAVSGLFDKLMAVNPSVEVYLLDAGGRIQSYSAP EGAVKRLQVDLAPVRRLLGGGALPIFGDDPRSPDGRKVFSAAPLKAAGRDAGYVYVIL QGESRESLAARVNAGSAANAMLWSMTLVALLGLMAGLAAFRLITRPLRTLTEAVRGLE THGMSWLPQARPLLKQAARSGGEIALLGQSFERLAQRTQEQWQALRNQDQQRRELFAN LSHDLRTPLTSLHGYLETLRMKSEVLEPQEQRRYLDIALEQSRKVGRLAQEMFELARL EYGVVKPEMEQFFLADLLQDVFQKFELAAEAKHQRLVADIAPGLPPITADLAMMERVL MNLIDNAVRVAPEGGEITVELQPHAQGGIEVTVRDTGPGISAALQEHLFERPAFTGYA AAQGARSGGFGLMIVYRILQLHESTIRLMSQPGAGAVFRFVLR" misc_feature 768863..769063 /locus_tag="Alide_0732" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(768881..768883,768893..768895,768905..768907, 768914..768916,768926..768928,768935..768937, 768992..768994,769004..769006,769013..769015, 769025..769027,769034..769036,769046..769048) /locus_tag="Alide_0732" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 768899..768901 /locus_tag="Alide_0732" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 769226..769540 /locus_tag="Alide_0732" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(769244..769246,769256..769258,769265..769267, 769337..769339,769343..769345,769349..769351, 769355..769360,769439..769450,769496..769498, 769502..769504,769517..769522,769526..769528) /locus_tag="Alide_0732" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 769256..769258 /locus_tag="Alide_0732" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(769349..769351,769355..769357,769439..769441, 769445..769447) /locus_tag="Alide_0732" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(769564..769911) /locus_tag="Alide_0733" /db_xref="GeneID:10102762" CDS complement(769564..769911) /locus_tag="Alide_0733" /inference="similar to AA sequence:KEGG:Rru_A2708" /note="KEGG: rru:Rru_A2708 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125386.1" /db_xref="GI:319761449" /db_xref="GeneID:10102762" /translation="MHPTLKSLALVTSTLAMAAPSVTHAAQNGCTVKARSDSVVLMHC KENLSETAWVEAAKAACEPGKACNVWIWEDPGKMPLVAPKTDAELPKSATGAAVAVWA NDTASLIKLKKVR" sig_peptide complement(769834..769911) /locus_tag="Alide_0733" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 26" gene complement(770087..770893) /locus_tag="Alide_0734" /db_xref="GeneID:10102763" CDS complement(770087..770893) /locus_tag="Alide_0734" /inference="protein motif:PFAM:PF07589" /note="KEGG: cja:CJA_0975 von Willebrand factor type A domain protein; PFAM: protein of unknown function DUF1555; von Willebrand factor type A; SMART: von Willebrand factor type A" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125387.1" /db_xref="GI:319761450" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR011449" /db_xref="InterPro:IPR013424" /db_xref="GeneID:10102763" /translation="MLTLSKFLRHIGSALALATASLATYAAPVTTQLGFLVDASGSIG SSNFQTMRNGYAAALAALPTDGSIEVTVVTFSSGTTTVVSPTVVTAASLPGIIAAVNS MAYSAGLTATAAGIAAISSLMTGSSNFSTGLNSMINIATDGEPNIPGNNPNQAAINAA IAARAAGIDALTAEAIGSFDVSALRSLVFSPVNGPCNNCGTFLPDGSSPPNPMTSNPW VLAVNSFNDFPTAIHNKVQASTGQVPEPGILMLMALGLVGLGITRRSRSA" sig_peptide complement(770813..770893) /locus_tag="Alide_0734" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 27" gene 771304..772746 /locus_tag="Alide_0735" /db_xref="GeneID:10102764" CDS 771304..772746 /locus_tag="Alide_0735" /EC_number="2.7.7.13" /inference="protein motif:TFAM:TIGR01479" /note="TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: rfr:Rfer_0711 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase" /codon_start=1 /transl_table=11 /product="mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase" /protein_id="YP_004125388.1" /db_xref="GI:319761451" /db_xref="GO:0016779" /db_xref="InterPro:IPR001538" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR006375" /db_xref="GeneID:10102764" /translation="MLIQPVVLSGGSGTRLWPLSREKYPKQLLALMGEDSLLQATLRR FNGVSGADSAPPLVVCNDEYRFVVAEQLRLIGRLGRIVLEPVGRNTAPALTLAALAAQ SGGEDPVLLIMPADHVVTQLAAFQEGVRHAARLAQDGAIVTFGITPDRPETGYGYIQA GAAVDEDGARAIARFVEKPDRATAEGYLQAGDYLWNSGLFVLRASVWLKALALCRPDI LEACEAAWKGGASDLSFWRVNAEAFAACPSDSIDYAVMERLAGAQSVAGLPRGVVLPL SAGWSDVGAWDALWQILPKDADGNVVQGRTLMQDSSNTLALSSGRLLACVGVQGLVVV ETPDAVLVADQRHTQDVKKIVDRLKRDGGTEGVLHRKVYRPWGWYDGVDGGERFQVKR IMVKPGGKLSLQMHHHRAEHWVVVRGTARVTKGEEVFLLTENQSTYIPLGVTHRLENP GHVDLEMIEVQSGSYLGEDDIVRFEDYYGR" misc_feature 771310..772743 /locus_tag="Alide_0735" /note="mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Region: GMP_PMI; TIGR01479" /db_xref="CDD:162382" misc_feature 771310..772170 /locus_tag="Alide_0735" /note="GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase; cd02509" /db_xref="CDD:133003" misc_feature order(771325..771327,771331..771333,771649..771651) /locus_tag="Alide_0735" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133003" misc_feature 772279..772731 /locus_tag="Alide_0735" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 772970..773611 /locus_tag="Alide_0736" /db_xref="GeneID:10102765" CDS 772970..773611 /locus_tag="Alide_0736" /inference="protein motif:TFAM:TIGR03027" /note="KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; Soluble ligand binding domain" /codon_start=1 /transl_table=11 /product="polysaccharide export protein, pep-cterm sytem-associated" /protein_id="YP_004125389.1" /db_xref="GI:319761452" /db_xref="InterPro:IPR003715" /db_xref="InterPro:IPR017477" /db_xref="InterPro:IPR019554" /db_xref="GeneID:10102765" /translation="MHKNVSRLLGSMVRVLAMAGVAVAMVGCGAMRGGDYPAAPAQAA TPDYNYVVGPGDTLNIIVWRNPELSQVVPVRPDGQVSTPLIDGLVAQGKTSAQIARDV EKELGKYVRDPVVTVIVTNFVGPYSEQIRVVGEAAKPQFLPYKQKMTVLDVMIAAGGL TDFADGNRATLVRSAEGNKRYKVRLDDLIKRGDIGANVDVLPGDILIIPQGWF" sig_peptide 772970..773044 /locus_tag="Alide_0736" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.960) with cleavage site probability 0.596 at residue 25" misc_feature 773084..773332 /locus_tag="Alide_0736" /note="Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563" /db_xref="CDD:145609" misc_feature 773117..773608 /locus_tag="Alide_0736" /note="putative polysaccharide export protein, PEP-CTERM sytem-associated; Region: pepcterm_export; TIGR03027" /db_xref="CDD:132072" misc_feature 773357..>773461 /locus_tag="Alide_0736" /note="SLBB domain; Region: SLBB; pfam10531" /db_xref="CDD:192616" gene 773658..775220 /locus_tag="Alide_0737" /db_xref="GeneID:10102766" CDS 773658..775220 /locus_tag="Alide_0737" /inference="protein motif:TFAM:TIGR03007" /note="manually curated; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; PFAM: lipopolysaccharide biosynthesis protein" /codon_start=1 /transl_table=11 /product="polysaccharide chain length determinant protein, pep-cterm locus subfamily" /protein_id="YP_004125390.1" /db_xref="GI:319761453" /db_xref="InterPro:IPR003856" /db_xref="InterPro:IPR014345" /db_xref="GeneID:10102766" /translation="MDELLGQITTAARGMWIYRRVAMLTTWLVGAIGVGVVLLMPDYY QASARVFVDTQSILRPLMTGIAVQPNIEQQVSMLSRTLINRPTVERLVRIADLDLGSQ SKASTDAVVDSVTKSISIQSTGRDNLYTLSYRNPSPEKAQRVVQALLTIFVESSLGAA RQDSDSARRFLDEQIKSYEAKLTEAEGRLKAFKLRNIEMQSQSGLDSAGRAAEIDNQL SQARLDLREAESARVAAGRQLEILRSQAAKSPVGSAPDVQTPELDARIYAQKRNLDTL LQRYTDEHPDVVRTRFLIADLEAQKRREVEALRRKAQEGHAAPAVETNPAILELSRIY SAAEVQVASLRARVVEYESRSRRIHEQLKVAPQLEAELAQLNRDYQVNQKNYADLVAR RESALMSGKLENTSNVAEFRVIDPPRVAPKPVAPNRLLLMPISLLVAIGAGLGMAFVM SQVRPVFFDGATLRQVTQLPLLGVVGQIASDESRRRESRSLMRFIMACVAFLLLYAGG MAALSIHSGVLG" misc_feature 773676..775190 /locus_tag="Alide_0737" /note="polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Region: pepcterm_ChnLen; TIGR03007" /db_xref="CDD:163099" misc_feature <773775..774101 /locus_tag="Alide_0737" /note="Chain length determinant protein; Region: Wzz; cl01623" /db_xref="CDD:186458" misc_feature <774717..775082 /locus_tag="Alide_0737" /note="Chain length determinant protein; Region: Wzz; cl01623" /db_xref="CDD:186458" gene 775229..776191 /locus_tag="Alide_0738" /db_xref="GeneID:10102767" CDS 775229..776191 /locus_tag="Alide_0738" /inference="similar to AA sequence:KEGG:CAP2UW1_1413" /note="manually curated; KEGG: app:CAP2UW1_1413 non-specific protein-tyrosine kinase" /codon_start=1 /transl_table=11 /product="non-specific protein-tyrosine kinase" /protein_id="YP_004125391.1" /db_xref="GI:319761454" /db_xref="GeneID:10102767" /translation="MTSSIEKAAQRLEQLRKAGVSLAGDKGRPTEAAAQESAYLPEHA AHFAGMDSVEAQAAAHSKPGTKTVQIDLTALGASGFVTPNAPRSVTTEQYRVIKRPLL ENATGKGASLVAHGNLIMVTSALPGEGKSFTAINLAMSLAMELDHTVMLVDADVTCPS VMTKLGLPPAAGLLDVLQDDKIKLSDVLLRTNVDKLTLLPAGLPHPRATELLASDAMT SLLDEMGKRYSDRIIIFDSPPLLLTTEARVLAGHMGQVVIVVQAEKTLQSQVEHALST IESCPIKLMVLNQVRSSGLGAYGYGYGYGHERMVGERGPATAAA" misc_feature 775466..776092 /locus_tag="Alide_0738" /note="exopolysaccharide/PEPCTERM locus tyrosine autokinase; Region: pepcterm_TyrKin; TIGR03018" /db_xref="CDD:132063" misc_feature 775583..>775696 /locus_tag="Alide_0738" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene 776213..777868 /locus_tag="Alide_0739" /db_xref="GeneID:10102768" CDS 776213..777868 /locus_tag="Alide_0739" /inference="protein motif:TFAM:TIGR03016" /note="TIGRFAM: PEP-CTERM system associated protein; KEGG: rfr:Rfer_0661 hypothetical protein" /codon_start=1 /transl_table=11 /product="pep-cterm system associated protein" /protein_id="YP_004125392.1" /db_xref="GI:319761455" /db_xref="InterPro:IPR017467" /db_xref="GeneID:10102768" /translation="MHLQYCRIASTHVAGRAVWALAAASALSPGIALAQVPDVSTAEP PGFAPVQSPVVPTEPTDAIVKRRDNAPADSRQSGVWLEPRITVQHTVTNNARLDATHI SDQVTEVNPGFRLVSDTARINGFVDYSLRTAHYARGTVSDQVWHNLNAKGTAEAIENR VFVDVAGVVALQPISAFGAPGVDSPANPNMAQTSSFRVSPYLKGSFGSNVDYEARYSV QDTRSDAENRASVTVQGWLLHLGSKPDGHTIIGWALDAMQEDAEFSTGRNIDTTTLRA RMSYLASPQLLLVGIGGVESTNQLSPTHKSHGIVGFGADWRPSNKTRLFLERESRYFG EAHKVNFEYRTSRTIWSYTDRKGIFAGLGAQSSASMGSLFNLLDSFYARTEPNAIRRT QLVLAEIERRGLPADMQVFPDFLTSSSTLQRLQELSVALLGQRSTFTLAVLRSDTRLL DGTLQLGDDFDANTRIRQRGWRLMVGHRLTPNASINASLGEMHSVGSVPGLETRVRPL ILGWNTLVARRTNVGIQLRRVLSDGSVTRYNESAIMGFITHRF" sig_peptide 776213..776317 /locus_tag="Alide_0739" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.761) with cleavage site probability 0.761 at residue 35" misc_feature 776453..777865 /locus_tag="Alide_0739" /note="Uncharacterized protein conserved in bacteria (DUF2320); Region: DUF2320; cl12051" /db_xref="CDD:164323" gene 777872..778972 /locus_tag="Alide_0740" /db_xref="GeneID:10102769" CDS 777872..778972 /locus_tag="Alide_0740" /inference="protein motif:TFAM:TIGR03015" /note="KEGG: rfr:Rfer_0662 ATPase; TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="secretion atpase, pep-cterm locus subfamily" /protein_id="YP_004125393.1" /db_xref="GI:319761456" /db_xref="InterPro:IPR000767" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017466" /db_xref="GeneID:10102769" /translation="MYEAFYGLTSKPFQLNPDPGFYFSSKQHQRARAYLEYGVMCCEG FIVITGEVGAGKTTIVRGLLDSLDPDTVVAAHLVSTQLGADDTLRLVGAAFGVRVHGV PKGDLLLALEAFFVAQTLKGKRCLLIVDEAQNLQPQAVEELRMLSNFQNGQDALLQTF LVGQPEFREILQSPGMLQLRQRVIATCHLGPLDSEETREYILHRLKCAGASDKPTFDS EIFEGIYRFTAGIPRRINTLMDRVLLQGFLTDKIHIDLELLNEIIHEIQSEMNVPPKV AHPWESPLRTATRGALPYDDSELADLSLDDELASGLSSNLANITAEQLSAHLLRIERS VLRQERVNLEILMNLQKLVAAARRSHPDSAAG" misc_feature 777872..778678 /locus_tag="Alide_0740" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 777872..778654 /locus_tag="Alide_0740" /note="Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]; Region: ExeA; COG3267" /db_xref="CDD:33078" gene 778981..779847 /locus_tag="Alide_0741" /db_xref="GeneID:10102770" CDS 778981..779847 /locus_tag="Alide_0741" /inference="protein motif:TFAM:TIGR03006" /note="KEGG: app:CAP2UW1_1417 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deactylase family protein, pep-cterm locus subfamily" /protein_id="YP_004125394.1" /db_xref="GI:319761457" /db_xref="InterPro:IPR002509" /db_xref="InterPro:IPR014344" /db_xref="GeneID:10102770" /translation="MHDPGPITNALTIDVEDYFQVSAFAPYIKRSEWDSRECRVERNV DRILALLDDRGVRATFFTLGWIAERYPAMVRRIVDGGHELASHGYGHERASDLSETDF FNDVHRAKALLEDIGGMLVLGYRAPSFSIGSANMWALDTLLRAGYRYSSSIYPIRHDH YGMPDAPRFSHQIRQGLIEIPPTTLRIFNHNLPSSGGGYFRLLPYSLSHWMLRHVNTQ DHSPAVFYFHPWEIDVRQPRIQGIGFKTRFRHYVNIGRMEKRLGLLLQDFCWGRMDHV FLPRHAPEVSLV" misc_feature 779005..779814 /locus_tag="Alide_0741" /note="polysaccharide deactylase family protein, PEP-CTERM locus subfamily; Region: pepcterm_polyde; TIGR03006" /db_xref="CDD:188268" misc_feature 779107..779427 /locus_tag="Alide_0741" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" misc_feature 779431..779814 /locus_tag="Alide_0741" /note="Domain of unknown function (DUF3473); Region: DUF3473; pfam11959" /db_xref="CDD:152394" gene 779855..780901 /locus_tag="Alide_0742" /db_xref="GeneID:10102771" CDS 779855..780901 /locus_tag="Alide_0742" /inference="protein motif:TFAM:TIGR03019" /note="KEGG: rfr:Rfer_0665 hypothetical protein; manually curated; TIGRFAM: FemAB-related protein, PEP-CTERM system-associated" /codon_start=1 /transl_table=11 /product="femab-related protein, pep-cterm system-associated" /protein_id="YP_004125395.1" /db_xref="GI:319761458" /db_xref="InterPro:IPR017469" /db_xref="GeneID:10102771" /translation="MELTIHRLDPNNASDTARWDDFVRGCAQATFFHRSGWQALIREV FRHDTYFLFAESGAGGGIRGVLPLGHVKSRLFGNALVSLPFSVYGGVAALDEQAASAL EREAECLAERLGVDHLELRNVQRRHADWPLQDLYVTFRKPIEPKEEANLLAIPRKQRA MVRKGIKNGLTSHIDTSVDRFFALYADNVRRHGTPALPKAYFKALLRIFGPDCEVLTV CSPDGHPISSVLSFYFRDEVLPYYAGDASAARELAANDFKYWELMRRACARGLKVFDY GRSKQNTGSYAFKKNWGFEPTPLHYEYRLYKSDSVPQNNPSNAKYRLLIAAWRRMPIQ LTNWLGPKIVRNLG" misc_feature 779903..780898 /locus_tag="Alide_0742" /note="FemAB family; Region: FemAB; cl11444" /db_xref="CDD:196237" gene 780915..782153 /locus_tag="Alide_0743" /db_xref="GeneID:10102772" CDS 780915..782153 /locus_tag="Alide_0743" /inference="protein motif:TFAM:TIGR03087" /note="KEGG: dar:Daro_2405 glycosyl transferase, group 1; TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1" /codon_start=1 /transl_table=11 /product="sugar transferase, pep-cterm/epsh1 system associated" /protein_id="YP_004125396.1" /db_xref="GI:319761459" /db_xref="InterPro:IPR001296" /db_xref="InterPro:IPR017521" /db_xref="GeneID:10102772" /translation="MAAASNILYLVHRLPYPPNKGDKVRSYHLLRHLQKSHRVFLGTF VDDPDDLQHLPTLRAMCSDLHVERIHARSAKIKSLSGILTGEALTLAYYRSAGMRQWV KQTAAAHDLRACVVFSSAMAQYAQMLLPQVPMLVDFVDVDSAKWTQYAPAHRWPLSML YRREGRHLLAYERAMAALAQRAYFVTTNETSLFLSQAPECAGRVQSMGNGVDSDFFAP HPLRESPFAAGEQAIVFTGAMDYWPNIDGVSWFVADMLPHLVARYPQVRFYIVGRSPS PQVQALASPHVVVTGTVPDVRPYLQHANAVVAPLRVARGIQNKILEAMAMQQPVVTVT SCADAIGATAEQGVLRADAPEEFVQVLQSLLESPTSVAELGRKARSYVEHACSWQAHL GTIDSCLGNAGAAHAGGAGA" misc_feature 780933..782111 /locus_tag="Alide_0743" /note="sugar transferase, PEP-CTERM/EpsH1 system associated; Region: stp1; TIGR03087" /db_xref="CDD:163131" misc_feature <781395..782087 /locus_tag="Alide_0743" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" gene 782131..783732 /locus_tag="Alide_0744" /db_xref="GeneID:10102773" CDS 782131..783732 /locus_tag="Alide_0744" /inference="protein motif:TFAM:TIGR03109" /note="KEGG: rfr:Rfer_0666 hypothetical protein; TIGRFAM: exosortase 1; eight transmembrane protein EpsH; EpsI family protein; PFAM: Exosortase EpsH-related" /codon_start=1 /transl_table=11 /product="exosortase 1" /protein_id="YP_004125397.1" /db_xref="GI:319761460" /db_xref="InterPro:IPR013426" /db_xref="InterPro:IPR014263" /db_xref="InterPro:IPR017540" /db_xref="InterPro:IPR019127" /db_xref="GeneID:10102773" /translation="MPVVPEHEDARMTGSIRSIPAHWRRPLAALVLLQAAILAIYWHS AWGMAMIWARSDTYAHGFVVPFIALWLVWRQRAALAPMVPRPGRLAWLLMAGAAALWL VGDLVSVNAATQLALMMLIVLSVPAVLGWRITRALAFPLGFLFFAVPIGDFLMPRLME WTADFTVLALRVSGIPVYREGLQFIIPSGTWSVVEACSGIRYLIASVTVGCLFAYLSY HSMRKRMVFIGVAIVVPLVANWLRAYLIVMLGHFSGNTIATGVDHLIYGWLFFGLVIG IMFLIGARWVDPTPPLKAPAPGSLVETSYSNRWPWFALSLPFVVVLAPHAVLAIMNLG TKTAPVQLARPIVAAPWHAAAMPPSTWVPAFQNASAELHMGLADAQGRPLGLHVSYYR QQNYERKLVSSENVLVHSLDPVWARVTSGSANVQMQGKVLRVDSAVIRQHARGMVGAG ERLLAWRFYWVHGTFTASDYAGKIQGALGRVSGWGDDGANIVIYTPLSDAKEAETDAS ALLQSYLDSQGDALTQALRQTRGRD" misc_feature 782197..782991 /locus_tag="Alide_0744" /note="eight transmembrane protein EpsH (proposed exosortase); Region: 8TM_EpsH; cl10495" /db_xref="CDD:195975" misc_feature 782263..782991 /locus_tag="Alide_0744" /note="Transmembrane exosortase (Exosortase_EpsH); Region: Exosortase_EpsH; pfam09721" /db_xref="CDD:192346" misc_feature 783163..783708 /locus_tag="Alide_0744" /note="Protein of unknown function (DUF3485); Region: DUF3485; cl11827" /db_xref="CDD:164274" gene 783735..785645 /locus_tag="Alide_0745" /db_xref="GeneID:10102774" CDS 783735..785645 /locus_tag="Alide_0745" /EC_number="6.3.5.4" /inference="protein motif:TFAM:TIGR03108" /note="TIGRFAM: exosortase 1 system-associated amidotransferase 1; asparagine synthase (glutamine-hydrolyzing); KEGG: rfr:Rfer_0669 asparagine synthase, glutamine-hydrolyzing; PFAM: asparagine synthase; glutamine amidotransferase class-II" /codon_start=1 /transl_table=11 /product="exosortase 1 system-associated amidotransferase 1" /protein_id="YP_004125398.1" /db_xref="GI:319761461" /db_xref="GO:0004066" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR001962" /db_xref="InterPro:IPR006426" /db_xref="InterPro:IPR017539" /db_xref="InterPro:IPR017932" /db_xref="GeneID:10102774" /translation="MCGISGIFDTRGTSTIPRDLISRINNIQSHRGPDENEVHLEPGL ALGHRRLSVIDLATGTQPLFNEDGTVGIVFNGEIYNYLELMQELKDLGYRFRTRSDTE VIVHAWQAWGEACVHRLRGMFAFALWDRKHQTLFLARDRMGVKPMHYAWLPDGSFIFG SELKVLTAHPGFVRDIDPLAVEGYFSFGYVPDPRCIYQNAHKLPAAHTLTLRRGDAGR PVPRPYWDVRFTNDNPIKLQDAQAELRERVRESVRLRMIADVPLGAFLSGGVDSSAVV ATMAGLSSAPVHTCSIGFDDPRFDESSFAQQVADRYRTDHRLDIVSSDDFDLIDTLAW LYDEPFADSSAIPTYRVCQMARKHVTVALSGDGGDESIGGYRRYRMHLGEEAVRGRLP LALRRGMFGPLGRWYPKADWAPRSLRAKTTFQALAMDSVQAYCHSMSQLRGDERRALF SPAFQRSLGGYGALEVFRLYAGQAQTEDSLALIQYLDYKTWLVGDINTKVDRASMAHS LEVREPLMDHLLVEWLATLPSDFKIRAGQGKVIFKQAYEPLLPRDVLYRPKMGFSVPL AAWLRGPLKDRVRLALLGERMRDCGYFNPVTLRRLVDEHNSGLRDHATALWMLLMFEA FLRLNEGAALHG" misc_feature 783735..785618 /locus_tag="Alide_0745" /note="exosortase 1 system-associated amidotransferase 1; Region: eps_aminotran_1; TIGR03108" /db_xref="CDD:132152" misc_feature 783738..784412 /locus_tag="Alide_0745" /note="Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a...; Region: AsnB; cd00712" /db_xref="CDD:48476" misc_feature order(783738..783740,783882..783884,783957..783965, 784032..784034) /locus_tag="Alide_0745" /note="active site" /db_xref="CDD:48476" misc_feature order(783786..783788,783810..783812,783819..783821, 783828..783842,783879..783881) /locus_tag="Alide_0745" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48476" misc_feature 784500..785429 /locus_tag="Alide_0745" /note="The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes...; Region: Asn_Synthase_B_C; cd01991" /db_xref="CDD:30178" misc_feature order(784527..784535,784608..784616,784785..784787, 784824..784832) /locus_tag="Alide_0745" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30178" misc_feature order(784527..784535,784608..784616,784785..784787, 784824..784832) /locus_tag="Alide_0745" /note="Molecular Tunnel; other site" /db_xref="CDD:30178" gene 785638..786780 /locus_tag="Alide_0746" /db_xref="GeneID:10102775" CDS 785638..786780 /locus_tag="Alide_0746" /inference="protein motif:TFAM:TIGR03088" /note="KEGG: dar:Daro_2407 glycosyl transferase, group 1; TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1" /codon_start=1 /transl_table=11 /product="sugar transferase, pep-cterm/epsh1 system associated" /protein_id="YP_004125399.1" /db_xref="GI:319761462" /db_xref="InterPro:IPR001296" /db_xref="InterPro:IPR017522" /db_xref="GeneID:10102775" /translation="MAKADRVRVVHVVHSFGVGGLENVIVQLINRLPPARFEHVVLAL TTVSEFRQRVVRPDVRFIALHKPPGHAVPLYPQLYRLLRELRPHVLHTCNLAALEVVP LAWLARVPLRVHAEHGWDVHDPQGRNPRYQCLRRLYRPFVSHYVAVSRDLDDYLGQAI GVPARRRSLIANGVDTDTFTPAQGVRVVPGCPFEPGRHWLVGTVGRLQTVKNQPLLAR AFVRALQDNPVMRDAARLVIVGEGPLRAEVGRVLAEAGMGDLAWLPGARDDVPEVLRA LDLFVLPSQAEGTSCTLQEAMASGLPVVATTVGGTPDLVQEGVTGHLVPPDDEQALAA AIVRTFDDRDAAARQGKAGRECALRSFAIGAMVRQYQQLFDREESA" misc_feature 785680..786762 /locus_tag="Alide_0746" /note="This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis; Region: GT1_WbnK_like; cd03807" /db_xref="CDD:99979" misc_feature 785683..786765 /locus_tag="Alide_0746" /note="sugar transferase, PEP-CTERM/EpsH1 system associated; Region: stp2; TIGR03088" /db_xref="CDD:132132" misc_feature order(785695..785697,786247..786255,786445..786447, 786511..786513) /locus_tag="Alide_0746" /note="putative ADP-binding pocket [chemical binding]; other site" /db_xref="CDD:99979" gene 786794..788011 /locus_tag="Alide_0747" /db_xref="GeneID:10102776" CDS 786794..788011 /locus_tag="Alide_0747" /inference="protein motif:PFAM:PF00534" /note="KEGG: dar:Daro_2409 glycosyl transferase, group 1; manually curated; PFAM: glycosyl transferase group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_004125400.1" /db_xref="GI:319761463" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10102776" /translation="MRILHVLDHSIPLHSGYTFRTAALLREQRALGWETFHLTSPKQG HTDEAVQTVDDLSFYRTPVVKNSFSSLPLAGQWQLMEQLTRRLREVAKKVRPDIIHAH SPVLNALPAIRVGRELGIPVVYEIRAFWEDAAVDHGTTHEGSARYRLTRALETRAIRR ADHVFTICEGLRSDIADRGIDPAKITVIPNAVDTHAFQASQSSDPALKHSLGLDGKVV LGFVGSFYAYEGLDLLIEALPTILQANPAVALLLVGGGPEEARLREQVARLGLEGHVV FSGRVPHKEVGRYYDLIDVLAYPRHSMRLTELVTPLKPLEAMAQQKLFVASSVGGHRE LVEHMKTGVLFKADDKHELTQAVLDLLASPRIWPELKANGRAFVESVRNWRNSVANYK PVYERLTRSEARL" misc_feature 786797..787993 /locus_tag="Alide_0747" /note="PEP-CTERM/exosortase 1-associated glycosyltransferase, Daro_2409 family; Region: stp3; TIGR04063" /db_xref="CDD:188578" misc_feature 786797..787966 /locus_tag="Alide_0747" /note="This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase; Region: GT1_wbuB_like; cd03794" /db_xref="CDD:99968" gene 788008..789159 /locus_tag="Alide_0748" /db_xref="GeneID:10102777" CDS 788008..789159 /locus_tag="Alide_0748" /EC_number="5.1.3.14" /inference="protein motif:TFAM:TIGR00236" /note="TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: gme:Gmet_1489 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase" /codon_start=1 /transl_table=11 /product="udp-n-acetylglucosamine 2-epimerase" /protein_id="YP_004125401.1" /db_xref="GI:319761464" /db_xref="GO:0008761" /db_xref="InterPro:IPR003331" /db_xref="GeneID:10102777" /translation="MKVMVVFGTRPEAIKMAPLVKALQQAASALQTVVCVTAQHREML DQVLRLFDIQPEYDLNVMKPGQDLFDVTTNILAGMKPVLTVERPDLVLVHGDTSTTLA ASLAAYYVRASVGHVEAGLRTGNKWAPFPEEMNRRITGAVADIHFAPTTAAKANLVRE GVVEDRIHVTGNTVIDALLAVVDKLRANAALRQSLDEKFSFLKPGRRLILVTGHRREN FGEGFQNICHALADIASAHPDADVLYPVHLNPNVRQPVRDILAARRLGNVHLIDPVDY LPFVYLMDRSYLIITDSGGVQEEAPSLGKPVLVMRDTTERPEAVQAGTVRLVGVDRRK LANEATRLLTDTAVYAAMAQAHNPYGDGLAAQRIVKALLEIKKERLHGT" misc_feature 788008..789126 /locus_tag="Alide_0748" /note="UDP-N-acetylglucosamine 2-epimerase; Region: wecB; TIGR00236" /db_xref="CDD:188036" misc_feature 788011..789126 /locus_tag="Alide_0748" /note="Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues...; Region: GT1_UDP-GlcNAc_2-Epimerase; cd03786" /db_xref="CDD:99962" misc_feature order(788035..788037,788827..788829,788833..788835, 788842..788844,788890..788892,788902..788904) /locus_tag="Alide_0748" /note="active site" /db_xref="CDD:99962" misc_feature order(788215..788217,788221..788226,788245..788247, 788329..788334,788338..788340,788344..788346, 788395..788397,788407..788409,788482..788484) /locus_tag="Alide_0748" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99962" gene 789149..790369 /locus_tag="Alide_0749" /db_xref="GeneID:10102778" CDS 789149..790369 /locus_tag="Alide_0749" /inference="protein motif:TFAM:TIGR03026" /note="KEGG: geo:Geob_3227 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase" /codon_start=1 /transl_table=11 /product="nucleotide sugar dehydrogenase" /protein_id="YP_004125402.1" /db_xref="GI:319761465" /db_xref="InterPro:IPR000871" /db_xref="InterPro:IPR001732" /db_xref="InterPro:IPR014026" /db_xref="InterPro:IPR014027" /db_xref="InterPro:IPR017476" /db_xref="GeneID:10102778" /translation="MAREFQKIVVMGLGYIGLPTASMLATKGHQVLGVDVNAQAVDTI NSGRIHIVEPDLDILVKSAVNSGNLKASLTPEEGDTFILAVPTPFKEVDGNPKAPDLA YVEAATRIIAPYLREDNLVILESTSPVGTTERVQEIIFSMRPELAGKIHTAHCPERVL PGQILRELVDNDRIIGGTTKAAVAKAKALYKTFCNGAILETDSRTAEMSKLVENSFRD VNIAFANELSVVCDHLGINVWETIALANRHPRVNILQPGPGVGGHCIAVDPWFIVASA PDEARLIRTAREVNDAKPDWVIAKVKAKAARFHEPVIGCLGLTFKANIDDMRESPSID IVAHLNQLGIGKIMACDPNVRKEKAPFPLYDLKSVIKEADILLLLVDHDEFKDIDPQV IKDKVVIDTKGVLR" misc_feature 789158..790351 /locus_tag="Alide_0749" /note="UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional; Region: wecC; PRK11064" /db_xref="CDD:182940" misc_feature 789170..>789517 /locus_tag="Alide_0749" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 789758..790030 /locus_tag="Alide_0749" /note="UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984" /db_xref="CDD:144540" misc_feature 790088..790363 /locus_tag="Alide_0749" /note="UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Region: UDPG_MGDP_dh_C; pfam03720" /db_xref="CDD:190725" gene 790392..791618 /locus_tag="Alide_0750" /db_xref="GeneID:10102779" CDS 790392..791618 /locus_tag="Alide_0750" /inference="protein motif:PFAM:PF00534" /note="PFAM: glycosyl transferase group 1; KEGG: hse:Hsero_2751 glycosyltransferase 1 protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_004125403.1" /db_xref="GI:319761466" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10102779" /translation="MACPGAPVKILLFSTLYPSAVRPIHGIFVETRLRELLKTGEVQA RVVAPVPWFPSKSQRFGAYARFAATPRLEQRNGVEVHHPRYLLPPKVGMSVAPYALAL GALPTIRRLQRQGFDFDLIDAHYYYPDGVAAALLASWLHKPFVVTARGSDLNVITQYA FPRKLILRTAEQAGASIGVSQALMDRLAELGADRSKLNTLRNGVDLERFAPEDRAEAR QRLDLPVQGGYLLSVGNLVELKGHHIAIEALTHLPEVTLLIAGAGPEEGALKALAQRL DVVKRVRWAGVVPQAELKWWYSAADALVLCSSREGWANVLLEAMACGTPVIATNICGT PEVVSSPAAGTLMASRDAQALVAAWSRLHGQLPTREETRAYAHTFSWDATTQGQLQLF QRIADAWALSGAQSVG" misc_feature 790419..791576 /locus_tag="Alide_0750" /note="This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (; Region: GT1_wlbH_like; cd03798" /db_xref="CDD:99971" misc_feature 790539..791576 /locus_tag="Alide_0750" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" gene 791714..791845 /locus_tag="Alide_0751" /db_xref="GeneID:10102780" CDS 791714..791845 /locus_tag="Alide_0751" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125404.1" /db_xref="GI:319761467" /db_xref="GeneID:10102780" /translation="MEALILVIDMGFMLYLCWRVFRSRDGQDIDLGFLRYDKTDTRH" gene 792011..793336 /locus_tag="Alide_0752" /db_xref="GeneID:10102781" CDS 792011..793336 /locus_tag="Alide_0752" /inference="protein motif:TFAM:TIGR03097" /note="KEGG: hse:Hsero_2764 O-antigen polymerase; TIGRFAM: wzy family polymerase, exosortase system type 1 associated; PFAM: O-antigen polymerase" /codon_start=1 /transl_table=11 /product="wzy family polymerase, exosortase system type 1 associated" /protein_id="YP_004125405.1" /db_xref="GI:319761468" /db_xref="InterPro:IPR007016" /db_xref="InterPro:IPR013838" /db_xref="InterPro:IPR017528" /db_xref="GeneID:10102781" /translation="MRDLSFALMLLAVLPLALVRPFNAYLLWGWTGMLAPTTYFYGFM VGARVNFVFAVLTLVFLLLGRVPWRNYQGNMVTWLYLLFAVHATLSFWLGYAGNPFDE QYYEILIKGLLFALVMPFFVRERVHFHAMFIIIALGLGIHGVLNGLKTIASAGGNLML GPAGTMLADRNHLSTALALVLPLLLYLQTYTANRLIRLGYLGAVCVVVLAILGGGSRA GFIAVSVVGMWLVLTTRRKGLALVLVVAAVVGFLAFAPENIMERMSTIKEADDDSSFM GRVYAWRISSAIALANPFFGGGFHAVQIQSIWDTFKASPGLLGFLHLPVPEFSAKAAH SIYFEVMGDLGFVGLGLFLFILLRALWSRQTIKRSTLRLGASYQWARDMADMLMLAVL AYMVGGAAVSVGYFEVIYMVVMLMELLRLNVKRALADSTRQAATLMAVP" misc_feature 792065..793267 /locus_tag="Alide_0752" /note="O-Antigen ligase; Region: Wzy_C; cl04850" /db_xref="CDD:194980" gene 793333..794295 /locus_tag="Alide_0753" /db_xref="GeneID:10102782" CDS 793333..794295 /locus_tag="Alide_0753" /inference="protein motif:PFAM:PF01522" /note="PFAM: polysaccharide deacetylase; KEGG: azo:azo3266 polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_004125406.1" /db_xref="GI:319761469" /db_xref="GO:0051287" /db_xref="InterPro:IPR002509" /db_xref="GeneID:10102782" /translation="MISRLVLQSLSKDKLSVFLFHKVPQRCDQMVPVDVDMARFEHLL DYTFSQLRVLPLEEAVSRLHSGHLPRRAACITFDDGYPDWLTGVAPALRRRNLHATFF ITSGQFDGVPLWHERILAAVRRLQGPLLDLGIPFLPAQSVASLDDRRRQVQRLEQELK YLTLNRREQILRQLEAVAGVRAADVPVMSEAQLRDLHSQGFGIGAHTALHPILDYCNA EEAVREIGGARERLQTIVGGSVNGFAYPNGRPYADFSRLHVDAVKRAGYRYAVTTHWG VADVCTSPFQIPRFTPWAEHDWHVTYQLVRNLMTEPTQVPEVAV" misc_feature 793528..>793650 /locus_tag="Alide_0753" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" misc_feature <793861..794142 /locus_tag="Alide_0753" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene 794292..795305 /locus_tag="Alide_0754" /db_xref="GeneID:10102783" CDS 794292..795305 /locus_tag="Alide_0754" /inference="protein motif:PFAM:PF01522" /note="PFAM: polysaccharide deacetylase; KEGG: nmu:Nmul_A0301 polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_004125407.1" /db_xref="GI:319761470" /db_xref="GO:0051287" /db_xref="InterPro:IPR002509" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102783" /translation="MSVVAALKDGARTALYRAGALGAWHRWRNRRALTVLMFHRVLPA NDPAFALAEREFTFTLDGFRRTLDFVQRHYSVVSLGDLQAARLGRAALPLNPLLITFD DGWRDTLTHAVPELARRSLPAVLFLASEVVTLDGPRWWQDALVAAMAKPGATDRLCAT AGWSEAPKGSASQALAAHLGALPEAARRAWLERHAPGVLNQIAERQMVTLDELQAMKE GPLAIGGHGHTHSPLTLSPDPEAELQTSQRMLDVLNQTVRSMSFPHGAWSSELAAMAR KSGFDWIFTSDAVLADMSRLPSPLPALGRIHVPENAWTCRAGDIDPARLATFLFSRPL QHF" misc_feature 794388..>794666 /locus_tag="Alide_0754" /note="poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB; Region: deacetyl_PgaB; TIGR03938" /db_xref="CDD:188453" misc_feature <794808..>794960 /locus_tag="Alide_0754" /note="autoinducer-2 (AI-2) kinase; Provisional; Region: PRK10939" /db_xref="CDD:182853" misc_feature <794922..795134 /locus_tag="Alide_0754" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene 795311..796354 /locus_tag="Alide_0755" /db_xref="GeneID:10102784" CDS 795311..796354 /locus_tag="Alide_0755" /inference="similar to AA sequence:KEGG:Psta_3837" /note="KEGG: psl:Psta_3837 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125408.1" /db_xref="GI:319761471" /db_xref="GeneID:10102784" /translation="MLMNIDRLRIQRKSFNRLTAAERDGWARLLDESTSSRWAFLSPT FAEAVAATVGPVDVLLCWSGDELVGVMPLQHSAGWLGRLGLREPVGRQMTDYFGLLAR SGVRLDWPSLLKAADIPCLYFTHLDESQATHGLVGDSPKKGLRNHIHPDGGEVYWELL RNRERKVVSEIERRERKLVAEHGPFTFEMQSTSPVQDLQSLVDLKNAQYLRTGHDGGA LLDQANVRLLNRLLASRDPHCLPRLSVLCCEGQLVAAHFGLQCGSVLHYWFPAYNNQF SAYSPGRVLYRHILLNAQLFGIGCIDHGEGDTVAKRDFANDEHQYFKGLVHASPWGQA LGFVQRLRWRFAA" misc_feature 795362..796294 /locus_tag="Alide_0755" /note="Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]; Region: COG5653" /db_xref="CDD:35212" gene complement(796355..797302) /locus_tag="Alide_0756" /db_xref="GeneID:10102785" CDS complement(796355..797302) /locus_tag="Alide_0756" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: aeh:Mlg_0132 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_004125409.1" /db_xref="GI:319761472" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10102785" /translation="MNHLRVSVIIPVRNGKDFLQEALDSVLQQSFTNLELLLIDDGST DDDYDRYALQDPRIRVIHLPGMGVSRARNVGMAQSRGDLLAFLDADDVWFPGKLQAQV SYFDAHPDVGVVFGKFIRWQALPSGGFAPASSLMQDAGQLNCADPERSGWLYTRLLDG LLVGMNTAVVRRTVYEAIGGFNEALRQGEDYDFWLKASRVAEMHSLNGPVALYRIHGA SAMHRLSPENHLVNLLNAAVTRWGLNSFEDQALTLRSFHERLARVYFDHAYAHYWHGD RAIARAAFWQALRRGHHPLRCLAYITLSYLTGRATASLP" misc_feature complement(796433..797290) /locus_tag="Alide_0756" /note="Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463" /db_xref="CDD:30811" misc_feature complement(796637..797284) /locus_tag="Alide_0756" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature complement(order(797033..797035,797039..797041, 797186..797188,797264..797266,797270..797272)) /locus_tag="Alide_0756" /note="active site" /db_xref="CDD:132997" gene complement(797372..798820) /locus_tag="Alide_0757" /db_xref="GeneID:10102786" CDS complement(797372..798820) /locus_tag="Alide_0757" /inference="protein motif:PFAM:PF01943" /note="PFAM: polysaccharide biosynthesis protein; KEGG: nwa:Nwat_1744 polysaccharide biosynthesis protein" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein" /protein_id="YP_004125410.1" /db_xref="GI:319761473" /db_xref="InterPro:IPR002797" /db_xref="GeneID:10102786" /translation="MLSVRQKVALQFLVSNLALVANFALSIVLARLLTPQDIGIFSMS AVLMAVAHVFRDFGVTAFIKREKELTPETLRNAFGVLLTTSWSVAAVMFVSAPYWAQF FHESRVMPAVQVLALGFVFIPFGAIPMAVLQREMAVEKSARITAVTSVVYFGASVALA LMGFGPMTMAWANLVNIITTGAMARWVVGRPLPWLPGFRQIGDIVHFGLGNLLTALLK AADNALPDILLGRWMTPAAVGLFSRANSTVNMVGTALLPTVNFFALPYMAKVHHSDGP VASEFLRASSLINSLMLPAFAVIAVLAHDIVSLLYGRAWLEAVPAIPWLCLSYAISSL FTLSAPALTGVGKPYAAIGPNAMLVTAKTAVAIWLMDGTLHTFALAIALGQLLSVPYY LWIHERYLGLRWIAWIKSTMSLVLQALLVGSICLGIRQALPQDIAPWVAIGVTGMGAL LAFLVGCLLLRLPMADELQRLQHALMQRRRNP" misc_feature complement(797522..798820) /locus_tag="Alide_0757" /note="Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244" /db_xref="CDD:32425" misc_feature complement(797486..798742) /locus_tag="Alide_0757" /note="Polysaccharide biosynthesis protein; Region: Polysacc_synt; cl10513" /db_xref="CDD:187004" gene 798978..800255 /locus_tag="Alide_0758" /db_xref="GeneID:10102787" CDS 798978..800255 /locus_tag="Alide_0758" /inference="protein motif:TFAM:TIGR03026" /note="KEGG: reu:Reut_B5375 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase" /codon_start=1 /transl_table=11 /product="nucleotide sugar dehydrogenase" /protein_id="YP_004125411.1" /db_xref="GI:319761474" /db_xref="InterPro:IPR001732" /db_xref="InterPro:IPR014026" /db_xref="InterPro:IPR014027" /db_xref="InterPro:IPR017476" /db_xref="GeneID:10102787" /translation="MNLSSATIAIIGLGYVGLPLAVEFGKHRNVLGFDINPARVAELQ AGRDHTLECSGEQLREACHLRYSHQPEDLKACQVFIVTVPTPVDQANRPDLTPLVKAS QIVGAALKSGDVVIYESTVFPGATEEVCVPELERMSGLKFNQDFFCGYSPERINPGDK DHRLPSIKKVTSGSTPEVAGAVDALYAQIITAGTHKASSIKVAEAAKVIENTQRDINI ALMNELSLIFARLGIDTLEVLQAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQEVG YHPDVILAGRRVNDNMARHVADTTVKLMLRKGIPVLGSRVLVLGLTFKENCPDLRNTK VVDMVHTLQGYNAQVDVYDPWIDTKEALHEYGLKCLSAMPAPGEYAAIILAVGHRQFV ELGEAGIKALGQANAVLFDVKSILPLGAADGRL" misc_feature 798984..800252 /locus_tag="Alide_0758" /note="Vi polysaccharide biosynthesis protein TviB; Provisional; Region: PRK15182" /db_xref="CDD:185104" misc_feature 798999..>799250 /locus_tag="Alide_0758" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 799575..799859 /locus_tag="Alide_0758" /note="UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984" /db_xref="CDD:144540" misc_feature 799926..800225 /locus_tag="Alide_0758" /note="UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Region: UDPG_MGDP_dh_C; pfam03720" /db_xref="CDD:190725" gene 800258..801334 /locus_tag="Alide_0759" /db_xref="GeneID:10102788" CDS 800258..801334 /locus_tag="Alide_0759" /inference="protein motif:PFAM:PF01370" /note="PFAM: NAD-dependent epimerase/dehydratase; KEGG: abo:ABO_0909 4-epimerase" /codon_start=1 /transl_table=11 /product="nad-dependent epimerase/dehydratase" /protein_id="YP_004125412.1" /db_xref="GI:319761475" /db_xref="GO:0003824" /db_xref="GO:0050662" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR008089" /db_xref="GeneID:10102788" /translation="MSSRYQTVQSQLQATPKTWLITGVAGFIGSNLLETLLKLGQRVV GLDNFATGHQHNLDEVQTLVNGAQWANFHFIQGDIRILDDCRRAMTFLPLGEGRDGGQ PGPIPVDYVLHQAALGSVPRSIEDPITTNSANITGFLNMLVAARDARVQSFTYAASSS TYGDHPGLPKVEEVIGKPLSPYAVTKYVNELYADVFARTYGFNAIGLRYFNVFGPRQD PDGAYAAVIPKWAAAMIQGKDVFINGDGETSRDFCFIENSVQANLLAATSADPAALNE VYNVAVSGRTTLNTLFDELKLALAGNGISYVKAPVYRDFRAGDVRHSQADIGKAKKLL GYMPSHEIKEGISQSIPWYIRFLG" misc_feature 800270..801319 /locus_tag="Alide_0759" /note="Vi polysaccharide biosynthesis protein TviC; Provisional; Region: PRK15181" /db_xref="CDD:185103" misc_feature 800312..801316 /locus_tag="Alide_0759" /note="UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs; Region: UDP_AE_SDR_e; cd05256" /db_xref="CDD:187566" misc_feature order(800324..800326,800330..800341,800396..800413, 800486..800494,800597..800605,800609..800611, 800654..800656,800723..800731,800801..800803, 800813..800815,800882..800893,800927..800929) /locus_tag="Alide_0759" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187566" misc_feature order(800609..800614,800729..800737,800801..800803, 800882..800884,800888..800890,800930..800935, 800942..800947,800978..800986,800999..801001, 801005..801007,801119..801121,801203..801205, 801212..801217,801224..801226) /locus_tag="Alide_0759" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187566" misc_feature order(800624..800629,800636..800641,800648..800650, 800660..800665,800672..800674,800684..800686, 800693..800695,800789..800800,800807..800812, 800816..800821,800828..800833,800840..800845, 800855..800857) /locus_tag="Alide_0759" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187566" misc_feature order(800657..800659,800729..800731,800801..800803, 800813..800815) /locus_tag="Alide_0759" /note="active site" /db_xref="CDD:187566" gene complement(801461..803365) /locus_tag="Alide_0760" /db_xref="GeneID:10102789" CDS complement(801461..803365) /locus_tag="Alide_0760" /inference="protein motif:PFAM:PF00884" /note="PFAM: sulfatase; KEGG: eli:ELI_12100 sulfatase" /codon_start=1 /transl_table=11 /product="sulfatase" /protein_id="YP_004125413.1" /db_xref="GI:319761476" /db_xref="GO:0008484" /db_xref="InterPro:IPR000917" /db_xref="GeneID:10102789" /translation="MKKSRVSLLAATRTLQRNWILFAVILLLTFLDIALLEKKYAIFS GGFLQANRISDIEGRLIFITTVLMLEAAMAGCIWYFFILVGSWRETPLQSSKYLFLLV YGLGSVVLDAAKYKILSYFGDFISLAVLRNLGGGSIREALLYGLEDGKLIGAGAALSI AICWYGYHRLKQRQQFVWTRDSIPISKWIVAGQMLLCLVCLIAISLVARSNGNMRPHF SKITPYGLTNTTINNFIAPEPSALDLLLKIAKGAPERPEHSYKVGFKNKKDNLVLVVS ESTRADVLNESVNDRPVTPVWRSIALEGGVGKAYYSHTGFTTSSLKAIFRASLGHTLP LGGTLFEILKTQGYQIVVLSGQDESFGHIERDSAAERMADIFFDARSAKDDRVFSSSA QGSLAISNKKILQQFDEISSQIDWQRPVFIYLNLQSAHFPYYHQNMPLTVVSHPLERN QISEDTREQLKLTYLNAVAYSDWATGQLIDRLRKQGVYERTLLTVSGDHGESLFDGGI LGHGISITEAQLHTLLVTNRHLPILDGLIGQADLAIVLLQGIGAQVDPAPALQGKPVI QLIGDINSPSSLGYVYPHGERLTVNVDSAEVVASWLKSPVKVTDLRSDTREFQEVIQL TTEWRHIAGI" misc_feature complement(801737..802558) /locus_tag="Alide_0760" /note="Sulfatase; Region: Sulfatase; cl10460" /db_xref="CDD:195965" gene complement(803665..805563) /locus_tag="Alide_0761" /db_xref="GeneID:10102790" CDS complement(803665..805563) /locus_tag="Alide_0761" /inference="similar to AA sequence:KEGG:Hsero_2760" /note="KEGG: hse:Hsero_2760 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125414.1" /db_xref="GI:319761477" /db_xref="GeneID:10102790" /translation="MPVTFGQPFKAGDWQFTTQGLVAKVDGATIPLQADEIASHRDGS ARFAVLSAQLSNLQPGQSKIINLYRGAKSTSTPSVPSNPDWNLELEAQVYDANGSVTT LVAQPQADLVKQIANGSGRRLAGAVATEYTVALPFKNKATGATHPHLTARLHARLIDG GQRIRTDVVMENTRTWTTSPGNITYSLAVKRNGSTIYTQPKFTHYHHARWHKVLWTGS SPEPQVRVRHSMPYFLASKAIWNYDLSLTIPESVLSGFYSQYTQSKASQANLGPMANL LLTPAFGTTGGRPEIGPVPQWTAMYLISQDERMKEVMLAHADAAGAVPIHYRDESSNQ PLDLDRYPNVATWRGTSQPALPAVVNGTTIWDPDTSHQASFAYVPYMITGDAFYQDEM AYWAGWNLTAMNPAYRSGGQGLLWEDQVRGQAWSLRALGEASRILPDSHAMKAYFQSR LSNSLEWFYQNWVVSPLPDVSPMGSPVNPYSTGTVGPWQNDFWAIVMAQHVEAGEPKA KELLNWVSKLGVGRFQNEAQGFCVAKAPAYYLQLKNASGQWITTWREFAQVNFPGVAC SSSLPVEPDSYPASAGGYSANARAMLAAVSSVDVPGAASAYTLWKSKTPLVDKDFLNN PTWAIVPR" gene 806467..807327 /locus_tag="Alide_0762" /db_xref="GeneID:10102791" CDS 806467..807327 /locus_tag="Alide_0762" /inference="similar to AA sequence:KEGG:Alvin_1802" /note="manually curated; KEGG: alv:Alvin_1802 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125415.1" /db_xref="GI:319761478" /db_xref="GeneID:10102791" /translation="MQESSAGSLCSLSNYYSCLYGPAGSARVIQDVSAARWQAAAQAL RQLPGSSVLRLQPLDADSAWLAGLEEGLRAAGYWTDRFFCFGNWYQPVPSGGFAGYWQ QRPSALRHSVERGRRRLDRAGGTWHIDIIADASPGLDACLAAYLAVYAQSWKSPEPCP DFMPALVRMAAREGWLRLGVLWLEDQPLAAQVWLVCGGKANIYKLAYVKGQERLSAGS VLTAALMQYAMDVDQVLEVDYLSGDDAYKRDWMAMRRERVGLVAFDPRRLSGLLAAGR HFAGKTLRRR" misc_feature <806791..807291 /locus_tag="Alide_0762" /note="Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]; Region: COG5653" /db_xref="CDD:35212" gene complement(807433..808191) /locus_tag="Alide_0763" /db_xref="GeneID:10102792" CDS complement(807433..808191) /locus_tag="Alide_0763" /inference="protein motif:PFAM:PF07589" /note="PFAM: protein of unknown function DUF1555; KEGG: ppd:Ppro_2434 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125416.1" /db_xref="GI:319761479" /db_xref="InterPro:IPR011449" /db_xref="InterPro:IPR013424" /db_xref="GeneID:10102792" /translation="MKALKTLVASAVLAMSTGAFAATVLPGSETSLQTIINNAYGGPG ASPVSAAPNVNTNQAGAELFQIEASGGSIATMILEIAGNANMNTFGIYDPYNTATQLQ LFSGSASSGAQVAITVDASNQFKAVDLTNGGILGSMLFTSSTFGYYLSGPGGTFFSQA SQNGGNEQMVSYRGDGDTVQFPGRAVGVWGPSSYLLGWEDTSLTGGSDKDYNDMVVYV ESVTKVPEPGSLALLGLGLSGLAFASRRKQKNAK" sig_peptide complement(808126..808191) /locus_tag="Alide_0763" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" gene complement(808386..809228) /locus_tag="Alide_0764" /db_xref="GeneID:10102793" CDS complement(808386..809228) /locus_tag="Alide_0764" /inference="protein motif:TFAM:TIGR03100" /note="KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family protein; TIGRFAM: hydrolase, ortholog 1, exosortase system type 1 associated; PFAM: alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase family protein" /protein_id="YP_004125417.1" /db_xref="GI:319761480" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR017531" /db_xref="GeneID:10102793" /translation="MNVQEQPIHIAGDGFDMLGILTLPAPGMPMRRIGVVVVVGGAQY RVGSHRQFVRLARRLAAAGHPVLRFDLPGMGDSPGEPVPFENTAPHVAAAVEAMLRAA PVRHAVLWGLCDGASASLLYMQATQDPRMTGLALLNPWVRSEAGLARARVKHYYRQRL LEPDFWRKLASGGVGLAALRGAWNNLRAMRHTVAPSLSFQERMAHAWQAFEGKTLLIL SERDLTAQEFVEYTATQPAWSHALQRPGVSRHDIAGADHTFSQPAWQLQVEDLTLAWL GAMA" misc_feature complement(808401..809102) /locus_tag="Alide_0764" /note="hydrolase, ortholog 1, exosortase system type 1 associated; Region: hydr1_PEP; TIGR03100" /db_xref="CDD:132144" gene complement(809225..810079) /locus_tag="Alide_0765" /db_xref="GeneID:10102794" CDS complement(809225..810079) /locus_tag="Alide_0765" /inference="protein motif:TFAM:TIGR03101" /note="TIGRFAM: hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: app:CAP2UW1_4344 hydrolase, exosortase system type 1 associated" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase family protein" /protein_id="YP_004125418.1" /db_xref="GI:319761481" /db_xref="InterPro:IPR017532" /db_xref="GeneID:10102794" /translation="MSPRARAALPQAFFLATDTGQRFCLFHPPQGATPLGRVLYLHPF AEELNSTRRVVAGQARALAQAGYGVLQIDLLGCGDSAGDFADATWAAWLHDAQQAHRW LDDHASGPLWLWGMRSGALLAAQLAALLQAPGTAPTHLLLWQPVASGQQMLQQFLRLR AASQWLGAGSTGEPPPSQVLAQGLSIDIAGYTLSPRLAQGLAEAHMPAPGSLPPGRLV WLETSSAQTPSLSPAAGKQLPAWHAAGWQVQAQAVEGPPFWQTVGTDEAPALVQATLA ALAYPSQA" misc_feature complement(809243..810049) /locus_tag="Alide_0765" /note="hydrolase, ortholog 2, exosortase system type 1 associated; Region: hydr2_PEP; TIGR03101" /db_xref="CDD:163135" misc_feature complement(809786..810013) /locus_tag="Alide_0765" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(810081..810341) /locus_tag="Alide_0766" /db_xref="GeneID:10102795" CDS complement(810081..810341) /locus_tag="Alide_0766" /inference="similar to AA sequence:KEGG:Rfer_0698" /note="KEGG: rfr:Rfer_0698 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125419.1" /db_xref="GI:319761482" /db_xref="GeneID:10102795" /translation="MNLTEQVLHVLDNALSLQGRAASFDRDTPLLGSLPELDSMAVLA VITGLENHFAITFSDDELHGAVFATVGSLCDLVEQSLARQAT" misc_feature complement(810105..810335) /locus_tag="Alide_0766" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" gene 810425..812071 /locus_tag="Alide_0767" /db_xref="GeneID:10102796" CDS 810425..812071 /locus_tag="Alide_0767" /inference="protein motif:TFAM:TIGR03098" /note="KEGG: app:CAP2UW1_1626 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="acyl-CoA ligase (amp-forming), exosortase system type 1 associated" /protein_id="YP_004125420.1" /db_xref="GI:319761483" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR017529" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10102796" /translation="MLRMPQEPDFQRGIPPVLLHELPARAAACWPDRTALTVDGAHLS YAGLQSQIECCAAGLVALGLERGARVAVYLEKRMEAVVSSFAAPAAGGVLVPVNPLLK AGQVAHILQDAEAQVLVTSAARLAVLAPALADCPGLRHVVLCDEGAPGASAPLAGGIA LHGWPDVLAGRPAGLPQVLDMDMAVIFYTSGSTGRPKGVVLSHRNVVSGAVSVAGYLH NHADDTLLAVLPLSFDAGFSQLTTAFLVGARVVLLNYLLPRDVLQAMVRERVTGLTAV PPLYMQLAAQDWPAAAAQHLRYFANTGGHMPRATLQRLRSLAPAAAPYLMYGLTEAFR STYLPPEEVDRRPDSIGRAIPNAQVCVLRDDGTECAVDEPGELVHRGALVALGYWRRP EETARRFRPWPPALLAAGGGWAAPELAVYSGDTVRRDADGFLYFVGRRDEMIKTSGYR VSPTEVEEVLYASGLVAEALVYARPDDALGSVICAALLASPRASGRAGDDNAALMAHC SKHLPAFMLPKVLQWVEQPLPRSPNGKLDRQRWMLEHGSI" misc_feature 810476..812038 /locus_tag="Alide_0767" /note="acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; Region: ligase_PEP_1; TIGR03098" /db_xref="CDD:188281" misc_feature 810941..>811186 /locus_tag="Alide_0767" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature <811397..812047 /locus_tag="Alide_0767" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 812058..813263 /locus_tag="Alide_0768" /db_xref="GeneID:10102797" CDS 812058..813263 /locus_tag="Alide_0768" /inference="protein motif:TFAM:TIGR03099" /note="KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2; TIGRFAM: pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2" /codon_start=1 /transl_table=11 /product="pyridoxal-dependent decarboxylase, exosortase system type 1 associated" /protein_id="YP_004125421.1" /db_xref="GI:319761484" /db_xref="InterPro:IPR000183" /db_xref="InterPro:IPR017530" /db_xref="GeneID:10102797" /translation="MDQFDTTHDELQVGGLPLSLLAERVGQTPFYAYDRSLIAARVAG VRQVLPQGVHLHYAIKANPMPALVGFMRPLVDGMDVASAGELKLALDAGADPRTIGFA GPGKRDAELRQAVAAGVLLHAESARELEVLAASAQALGRSARVALRINPDFELRGAGM HMGGGPKPFGIDAEQVPAMLRAMARDGLAFEGFHIYPGSQNLRGSVIAESLHRSVELV LRLAHDAPAPVRYVNLGGGWGIPYVAGEQRLDLAPVADALAQVQAALGRALPEAQMVL ELGRYLVGEAGIYVARVIDRKVSRGQVFLVTDGGMHQHLAASGNFGQVIRRNYPVVIG NRLQAAERESATVVGPLCTPLDVLAERMELAVAQPGDLVVVLQSGAYGATASPQAFLG HPPCAEVLV" misc_feature 812067..813260 /locus_tag="Alide_0768" /note="pyridoxal-dependent decarboxylase, exosortase system type 1 associated; Region: dCO2ase_PEP1; TIGR03099" /db_xref="CDD:132143" misc_feature 812121..813260 /locus_tag="Alide_0768" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase; Region: PLPDE_III_Btrk_like; cd06839" /db_xref="CDD:143506" misc_feature order(812139..812141,812235..812237,812298..812303, 812307..812312,812376..812378,812427..812429, 812436..812438,812448..812450,812556..812567, 812937..812948,812967..812969,812973..812975, 812979..812981,812988..812990,813102..813104, 813108..813116,813123..813125,813207..813215, 813225..813233) /locus_tag="Alide_0768" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143506" misc_feature order(812229..812231,812235..812237,812292..812294, 812361..812363,812499..812501,812643..812645, 812652..812654,812763..812768,812886..812897, 813111..813116,813198..813200,813210..813212, 813225..813227) /locus_tag="Alide_0768" /note="active site" /db_xref="CDD:143506" misc_feature order(812229..812231,812235..812237,812292..812294, 812361..812363,812499..812501,812643..812645, 812652..812654,812763..812768,812886..812897, 813111..813113,813198..813200) /locus_tag="Alide_0768" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143506" misc_feature order(812235..812237,813111..813113) /locus_tag="Alide_0768" /note="catalytic residues [active]" /db_xref="CDD:143506" misc_feature order(812652..812654,812895..812897,813111..813116, 813198..813200,813210..813212,813225..813227) /locus_tag="Alide_0768" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143506" gene 813266..815347 /locus_tag="Alide_0769" /db_xref="GeneID:10102798" CDS 813266..815347 /locus_tag="Alide_0769" /inference="protein motif:TFAM:TIGR02916" /note="TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_0703 periplasmic sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="pep-cterm system histidine kinase" /protein_id="YP_004125422.1" /db_xref="GI:319761485" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR014265" /db_xref="GeneID:10102798" /translation="MDGSESAVIHSGWAWAAVAYALLSLRLVQQEYLKKPVNRIAMAM LAAALLSVAWSGFSFLALTVNAAWWLGAQSADILRYLAWGVFVFLFFNRSAGDISGPW YRWWPGLAVLAVLGAPPLVMGMHALAGPAGHVFVMVLLAVAGLVLVEQLFRNLPEDAL WSAKPVCLGLAGTFLFDLYLFSQGLLLQGLDPDALKVRPFVHALMVPLLLLATTRHRN WIAKIRVSRKVIFHSATLVLVGLYLLFMAGVGYYVRYFGGEWGGALQLGLVFVATVLA IAFVLSGSLRAKLRVFLGKHFFRYRFDYREEWLKFTATLSSQDQPQEAGRSVIRGLAD MLESPAGALWLRRPEDDPYRQVARWNLAPATQTVDRHADLLEFMRATGWVINLEELRA EPARYNDLRLPEWLAEYPQAWLLVPLWQGKDLLGFVLLASPRTRVDVNWEVIDLLKTA GHQAASILAQMQATEALLESRKFEAFNRMSAFVVHDLKNIVAQLSLMVKNAKRLQNNP EFQADMLMTVENSLERMRQLMQQLRQGAASGAVSAGVDLGKIAERLAAEALGRGRTVQ LEASSQVFTRGQADRLERIIGHLLHNAFDATDADGRVWVKVDRFGSHARIEVGDEGQG MTEEFVQTRLFKPFQTTKEAGMGIGTYESFQYVQELGGKISVDSKVGRGTVVSLLLPL IEISRDSDLHL" misc_feature <813710..815308 /locus_tag="Alide_0769" /note="putative PEP-CTERM system histidine kinase; Region: PEP_his_kin; TIGR02916" /db_xref="CDD:163071" misc_feature 815009..815305 /locus_tag="Alide_0769" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(815027..815029,815039..815041,815048..815050, 815117..815119,815123..815125,815129..815131, 815135..815140,815204..815215,815261..815263, 815267..815269,815282..815287,815291..815293) /locus_tag="Alide_0769" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 815039..815041 /locus_tag="Alide_0769" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(815129..815131,815135..815137,815204..815206, 815210..815212) /locus_tag="Alide_0769" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 815356..816717 /locus_tag="Alide_0770" /db_xref="GeneID:10102799" CDS 815356..816717 /locus_tag="Alide_0770" /inference="protein motif:TFAM:TIGR02915" /note="TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: rfr:Rfer_0704 two component, sigma54 specific, fis family transcriptional regulator; SMART: response regulator receiver; AAA ATPase" /codon_start=1 /transl_table=11 /product="pep-cterm system response regulator" /protein_id="YP_004125423.1" /db_xref="GI:319761486" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR014264" /db_xref="InterPro:IPR020441" /db_xref="GeneID:10102799" /translation="MSTDKLQQPLLVVEDDLALQKQIKWSLDRFESVTAHDRESAMTQ VRRYSPAVVTMDLGLPPDADSVSEGFKLLEQILAAAPDTKVIVLTGQNDQSNAVKAVG MGAYDFLAKPFEPEVLNLCVERAFRLHHLQAENKRLRAMQMPDALSGLVTRDPQMLRI CRTIEKVASTNASVMLLGESGTGKEVLARGLHQQSNRKGNFVAINCAAIPENLLESEL FGYEKGAFTGAAKTTPGKIETAHGGTLMLDEIGDMPMPLQAKLLRFLQERVVERVGGR QGIPVDVRVVCATHQNLAQCIKEGRFREDLYYRLAEIVVEIPPLRARVGDAALLAHSF VRRFGGEHGRSLTLADDALRAIESYSWPGNIRELENRIKRATIMADGNQLTADDVGLA GADGTEDDRSLDLRLTREAAEQRAVLAALARADGTVAKAADLLGVSRPTLYDLMHRLG LKI" misc_feature 815383..816711 /locus_tag="Alide_0770" /note="PEP-CTERM-box response regulator transcription factor; Region: PEP_resp_reg; TIGR02915" /db_xref="CDD:163070" misc_feature 815386..815733 /locus_tag="Alide_0770" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(815395..815400,815521..815523,815560..815562, 815620..815622,815677..815679,815686..815691) /locus_tag="Alide_0770" /note="active site" /db_xref="CDD:29071" misc_feature 815521..815523 /locus_tag="Alide_0770" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(815530..815535,815554..815562) /locus_tag="Alide_0770" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 815686..815694 /locus_tag="Alide_0770" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 815863..816312 /locus_tag="Alide_0770" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 815887..815910 /locus_tag="Alide_0770" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(815890..815913,816097..816099,816223..816225) /locus_tag="Alide_0770" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 816085..816102 /locus_tag="Alide_0770" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 816280..816282 /locus_tag="Alide_0770" /note="arginine finger; other site" /db_xref="CDD:99707" gene 817007..819787 /locus_tag="Alide_0771" /db_xref="GeneID:10102800" CDS 817007..819787 /locus_tag="Alide_0771" /inference="protein motif:TFAM:TIGR02917" /note="KEGG: rfr:Rfer_0705 tetratricopeptide TPR_2; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein" /codon_start=1 /transl_table=11 /product="pep-cterm system tpr-repeat lipoprotein" /protein_id="YP_004125424.1" /db_xref="GI:319761487" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR014266" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10102800" /translation="MTAITSRTLVPAAALTVALLMSACGRDDPDALVASAQDYLSRND APAAIIQLKNALQSRPDSAKARLLLGQALLDTGDAQGAETEFRKAQDLGVPPAEVVPQ LALALLRSRQYSKITSDYAGQQLADAQAQASLQTTLAIAWQRQGDEAKAQGSLGEALK AKADYAPALIEQARSKVRGGDVDGALAGLGQIPRQSPVGAEALKLRGDILLHSKRDAD AAMAAYRDALEVKPSYVEGQAAIVELLISQGKTTAAAESLQALEKAAPGRPQTLYLQA MLAYTKGDFKAAQESVQKLVRMAPESARALELAGMTDLQLGANAQAEASLAKALQLNP GLAMARRGLVTSYMRLGRLDKAIATLPSDIDGNDRDPGMLGLAGQAYMLQGDVDRAQR YFARASRLVPNDAVMRTSLAVSHLASGKGDAALGELRSIAASDEGVVADMALINALLQ ERKVEEALKAIDLLEKKRPADVLPVFLRGRALLLKQDTAGARKAMERALEIDPGYFPA AGVLAVLDNAEKRPDDARARIEAAIKRDPGNVQAYMVLMELRAANGADRAELAGILRK AVDGAPSSPIPRQLLVDHYLRGGETKEALAVAQQAVAALPDNAQLFDALGRAQSANGE HNQALASFNRMAALQPQSPVPYLRMAGANLIAGDRTAAGQSWRKALEIDPTALEAQQG LVRLAMADRKSGDALAMSRTVQKQRPKEAAGYALEGEIHMAEKAWDKAIDVFRVGLKQ VPASGELAVRLHEVLVTAGKKSEADRLAAEWQRSHAKDATFPLYLGTRALAAKDLPES LRQYERAVALQPNNAIALNNMAWIKGQLGRDGALADAERANALAPNQPAFMDTWAMLL SAASQHARAVDLQKRVVQLRPQQLEFKLNLAKIYIKAGQKDAAKAVLDELAAAGARFP AQAEVEELRKAL" misc_feature 817067..819688 /locus_tag="Alide_0771" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" misc_feature 817814..818086 /locus_tag="Alide_0771" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(817814..817819,817823..817828,817835..817840, 817925..817930,817934..817939,817946..817951, 818027..818032,818039..818044,818051..818056) /locus_tag="Alide_0771" /note="binding surface" /db_xref="CDD:29151" misc_feature order(817832..817834,817868..817870,817880..817882, 817889..817891,817934..817936,817970..817972, 817982..817984,817991..817993,818036..818038, 818072..818074,818084..818086) /locus_tag="Alide_0771" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 818045..818314 /locus_tag="Alide_0771" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(818072..818074,818084..818086,818093..818095, 818138..818140,818174..818176,818186..818188, 818195..818197,818240..818242,818276..818278, 818288..818290,818297..818299) /locus_tag="Alide_0771" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(818129..818134,818138..818143,818150..818155, 818231..818236,818243..818248,818255..818260) /locus_tag="Alide_0771" /note="binding surface" /db_xref="CDD:29151" misc_feature 818336..818617 /locus_tag="Alide_0771" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(818339..818341,818375..818377,818387..818389, 818396..818398,818441..818443,818477..818479, 818489..818491,818498..818500,818543..818545, 818579..818581,818591..818593,818600..818602) /locus_tag="Alide_0771" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(818342..818347,818432..818437,818441..818446, 818453..818458,818534..818539,818546..818551, 818558..818563) /locus_tag="Alide_0771" /note="binding surface" /db_xref="CDD:29151" misc_feature 818849..819133 /locus_tag="Alide_0771" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(818852..818854,818888..818890,818900..818902, 818909..818911,818954..818956,818990..818992, 819002..819004,819011..819013,819056..819058, 819092..819094,819104..819106,819113..819115) /locus_tag="Alide_0771" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(818855..818860,818945..818950,818954..818959, 818966..818971,819047..819052,819059..819064, 819071..819076) /locus_tag="Alide_0771" /note="binding surface" /db_xref="CDD:29151" gene 819837..820616 /locus_tag="Alide_0772" /db_xref="GeneID:10102801" CDS 819837..820616 /locus_tag="Alide_0772" /inference="protein motif:PFAM:PF00089" /note="KEGG: rfr:Rfer_0710 peptidase S1 and S6, chymotrypsin/Hap; manually curated; PFAM: peptidase S1 and S6 chymotrypsin/Hap" /codon_start=1 /transl_table=11 /product="peptidase s1 and s6 chymotrypsin/hap" /protein_id="YP_004125425.1" /db_xref="GI:319761488" /db_xref="GO:0004252" /db_xref="InterPro:IPR001254" /db_xref="GeneID:10102801" /translation="MPPRRVALWALAWLLQCLWAGGALAQLPDTIERVKPSVVLVGTY AATDNPRFRYVGAGFVVGDGLRVVTSAHVVTRMNMLSPDGQALAVQVRSGPVAWLMRK AKVMELNLEQDLALLQIEGPPVAALKVASSDHVREGDELAFMGFPIGGVLGFASVTHR AGVASITTMALPSPTSQQLSERAILSLRAGPVQVLQLDATAYPGNSGGPLFDPRSGAV LGVISMVHIKSTREAAMSQPSGISYAIPSRYVLELLARHPS" sig_peptide 819837..819914 /locus_tag="Alide_0772" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.992 at residue 26" misc_feature 819957..820511 /locus_tag="Alide_0772" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" gene complement(820644..820913) /locus_tag="Alide_0773" /db_xref="GeneID:10102802" CDS complement(820644..820913) /locus_tag="Alide_0773" /inference="protein motif:TFAM:TIGR00008" /note="KEGG: dia:Dtpsy_0625 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein" /codon_start=1 /transl_table=11 /product="translation initiation factor if-1" /protein_id="YP_004125426.1" /db_xref="GI:319761489" /db_xref="GO:0003743" /db_xref="InterPro:IPR004368" /db_xref="InterPro:IPR006196" /db_xref="GeneID:10102802" /translation="MSNKEELIEMQGKVDEVLPDARFRVTLDNGHKLVAYSGGKMRKH RIRVLAGDTVSLELSPYDLSKGRITFRHLPPRAGGAPRAPARPRR" misc_feature complement(820701..820892) /locus_tag="Alide_0773" /note="S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451" /db_xref="CDD:88417" misc_feature complement(order(820713..820715,820719..820721, 820770..820781,820794..820799,820806..820808, 820842..820844,820860..820868)) /locus_tag="Alide_0773" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:88417" misc_feature complement(order(820701..820703,820794..820796, 820806..820808)) /locus_tag="Alide_0773" /note="predicted 30S ribosome binding site; other site" /db_xref="CDD:88417" gene complement(821261..821914) /locus_tag="Alide_0774" /db_xref="GeneID:10102803" CDS complement(821261..821914) /locus_tag="Alide_0774" /inference="protein motif:PFAM:PF03171" /note="PFAM: 2OG-Fe(II) oxygenase; KEGG: dia:Dtpsy_0631 2OG-Fe(II) oxygenase" /codon_start=1 /transl_table=11 /product="2og-fe(ii) oxygenase" /protein_id="YP_004125427.1" /db_xref="GI:319761490" /db_xref="GO:0016491" /db_xref="InterPro:IPR005123" /db_xref="GeneID:10102803" /translation="MPNPPIDDLFGDEPAALPLGAQAVLLRGFALAQAQALVQGVRQV ALRAPWRHMQTPGGKAMSVAMTGCGPLSWVSDRRGYRYADRDPLTGRPWPAMPAAFAR LARAAAQQAGFAHFAPDACLVNRYEPGARMSLHQDRDERDLAAPIVSVSLGLPAVFLW GGATRGERALRVPLHHGDVVVWGGVDRLRFHGVLPVAPGEHPATGSCRINLTLRKAL" misc_feature complement(821267..821893) /locus_tag="Alide_0774" /note="2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy; cl01206" /db_xref="CDD:194067" gene 822005..823513 /locus_tag="Alide_0775" /db_xref="GeneID:10102804" CDS 822005..823513 /locus_tag="Alide_0775" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0653 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004125428.1" /db_xref="GI:319761491" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10102804" /translation="MNIAQLLQRSALVHGDRPAVLAGARLLHDYRQLAARVAALAGHL RGRCGVQAGERVAIFSANCPEYLEALHAIHWAGAISVPVNYKLHARELAHVLSDSGAR VVCVSGALKGDALAAGAGAAALQVLGDAAWEQAAQGAPLPLQECAPEDVASLFYTSGT TGRPKGVMQTHRNLLAMTMAYFTDVDDVRHDDAMVYAAPMSHGAGLYNYAHMLRGARH VVPESGGFDPAELVRLAAGVGRLSLFAAPTMVHRLVEHVRSTGADAGGFKTIVYGGGP MYVEDLRRAIDAMGQKFVQIYGQGESPMTITALAREHLADTAHPRWAERIASVGVAHS CVQVRVVDGQDRPVPAGEPGEVVVRGETVMAGYWGNAEATAQTLRGGWLHTGDVGQLD EHGFLTLRDRSKDVIISGGSNIYPREVEEVLLQHPRVREAAVVGRRDAEWGEVVVAFL VADGAPVPDAELDALCLAHIARFKRPKAYRWVQALPKNSYGKVLKTELRALP" misc_feature 822005..823504 /locus_tag="Alide_0775" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature 822011..823507 /locus_tag="Alide_0775" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 823610..824329 /locus_tag="Alide_0776" /db_xref="GeneID:10102805" CDS 823610..824329 /locus_tag="Alide_0776" /inference="protein motif:PFAM:PF00175" /note="PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ctt:CtCNB1_2425 FAD-binding oxidoreductase" /codon_start=1 /transl_table=11 /product="oxidoreductase fad/nad(p)-binding domain protein" /protein_id="YP_004125429.1" /db_xref="GI:319761492" /db_xref="GO:0016491" /db_xref="InterPro:IPR001221" /db_xref="InterPro:IPR001433" /db_xref="InterPro:IPR008333" /db_xref="InterPro:IPR017927" /db_xref="GeneID:10102805" /translation="MATHTVKLQARQPVAEGTMAFHLEKPAGFEFRPGQALEVILPGG AQGEDGRHAFSIVSAPHEAELVFATRMRDSAFKRALAALPLGASLDIDGPFGSLTLHK KAERAGVLVAGGIGITPFMSMLRNAAEQHSEQSLVLLYSNRRPEDAAFLAELQALAQR HPKFRLVATMTGMARSQQAWDGATGYIDGAFVQRAIEGLPEPIFYVSGPPALVEAMRG VLVDDAGVDEDDVRSEEFYGY" misc_feature 823637..824311 /locus_tag="Alide_0776" /note="Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron...; Region: FNR_like; cd00322" /db_xref="CDD:99778" misc_feature order(823715..823717,823763..823774,823811..823819, 823832..823840,823952..823954) /locus_tag="Alide_0776" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99778" misc_feature order(823763..823765,823769..823774) /locus_tag="Alide_0776" /note="conserved FAD binding motif [chemical binding]; other site" /db_xref="CDD:99778" misc_feature order(823838..823840,823847..823849,823865..823867) /locus_tag="Alide_0776" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99778" misc_feature order(823937..823939,823949..823960,823964..823966) /locus_tag="Alide_0776" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99778" misc_feature order(823952..823957,824030..824038,824231..824236) /locus_tag="Alide_0776" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99778" gene complement(824323..825903) /locus_tag="Alide_0777" /db_xref="GeneID:10102806" CDS complement(824323..825903) /locus_tag="Alide_0777" /inference="similar to AA sequence:KEGG:Vapar_3422" /note="KEGG: vap:Vapar_3422 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125430.1" /db_xref="GI:319761493" /db_xref="GeneID:10102806" /translation="MASPNAPFFPIIYVRGYAMTEREQDETTADPFCGFNLGSTVYRA TPDKTKPAKKFVFESPVLRLMSDFGYADVYDNGLDILDGEWEGSISLRSIVIYRYYEQ ASALLGTGRTPDISQFARGLSDLVLRVRDLACANPDNRLAPEDFRCHLVAHSMGGLVC RAFLQNPDLGDDQARASVDKVFTYATPHNGIDVAGINVPQWLSAADMNNFNRENMARY LKLEALYKKTQRVDWLPEEAFPSERFFCMIGTNRSDYDVALGLSRTFAGHGSDGLVRI ENASVWGVNARGRFSAPCATAYTYRSHSGYFGIVNSEEAYQNLTRFLFGDVRVDIWVD IDSVQLPPEIQGKAVNALYQFELLASPRGKRWYLTRRMAEEDSVACRSHQDLVDPEKK DARSIYLSTVFLANRARVNPARPSLAYGMTLGVRVPDYEVERKFWADTHYEGGYLFRD TVIVEMVPPQTPGDAWTTRFGWQSDNVGHATESLAYRTLKTGKQVMTIAFGNDNAPGI AGRVRFVVSAWNAPADDQ" misc_feature complement(<825064..>825456) /locus_tag="Alide_0777" /note="Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]; Region: LipA; COG1075" /db_xref="CDD:31273" misc_feature complement(<825334..>825456) /locus_tag="Alide_0777" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(825915..826523) /locus_tag="Alide_0778" /db_xref="GeneID:10102807" CDS complement(825915..826523) /locus_tag="Alide_0778" /inference="protein motif:PFAM:PF02557" /note="PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; Peptidoglycan-binding domain 1 protein; KEGG: pph:Ppha_2260 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin" /codon_start=1 /transl_table=11 /product="peptidase m15b and m15c dd-carboxypeptidase vany/endolysin" /protein_id="YP_004125431.1" /db_xref="GI:319761494" /db_xref="GO:0008233" /db_xref="InterPro:IPR002477" /db_xref="InterPro:IPR003709" /db_xref="GeneID:10102807" /translation="MRIEEMIAAVQARLGIEVDGKAGPQTWGAIYERLVGKKIDGQAP EQAIAPVDPRSEKVIATLLPQVQPMARALVQKAAASGIAIRVISGLRTYEEQDALYAQ GRTAPGSVVTNARGGYSNHNFGIAFDIGVFEGNRYLGDSPKYKAVGVLGMDLGLEWGG NWKTIVDQPHYQLRPAWAADLSERQMLAEMRARHASGSPVFA" misc_feature complement(<826101..826334) /locus_tag="Alide_0778" /note="D-alanyl-D-alanine carboxypeptidase; Region: VanY; cl00813" /db_xref="CDD:186202" gene 826699..827370 /locus_tag="Alide_0779" /db_xref="GeneID:10102808" CDS 826699..827370 /locus_tag="Alide_0779" /inference="protein motif:PFAM:PF01323" /note="PFAM: DSBA oxidoreductase; KEGG: ajs:Ajs_0654 DsbA oxidoreductase" /codon_start=1 /transl_table=11 /product="dsba oxidoreductase" /protein_id="YP_004125432.1" /db_xref="GI:319761495" /db_xref="GO:0015035" /db_xref="InterPro:IPR001853" /db_xref="GeneID:10102808" /translation="MTTPAAPITLKIDFVSDVACPWCAIGLAALAQAAGRLLGQVLLD WHFQPFELNPGMGPGGEDLLEHLAAKYGAAPEQLRQTQQQIAARGAALGVVFSPRRTR IYNTFDAHRLLHWLGEQGAAGQQLAFKQALFKSYFTDAENPSDPAVLLRLVREAGLDE ARARAVLESGEYADAVREREAFYQERGIHSVPAVIVDGRHLIQGGQPVEVFEQALRRI AAQRV" misc_feature 826711..827358 /locus_tag="Alide_0779" /note="Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: FrnE; COG2761" /db_xref="CDD:32627" misc_feature 826732..827346 /locus_tag="Alide_0779" /note="DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins; Region: DsbA_FrnE; cd03024" /db_xref="CDD:48573" misc_feature order(826756..826758,826765..826767) /locus_tag="Alide_0779" /note="catalytic residues [active]" /db_xref="CDD:48573" gene complement(827442..827924) /locus_tag="Alide_0780" /db_xref="GeneID:10102809" CDS complement(827442..827924) /locus_tag="Alide_0780" /inference="protein motif:PFAM:PF05981" /note="PFAM: CreA family protein; KEGG: dia:Dtpsy_0634 CreA family protein" /codon_start=1 /transl_table=11 /product="crea family protein" /protein_id="YP_004125433.1" /db_xref="GI:319761496" /db_xref="InterPro:IPR010292" /db_xref="GeneID:10102809" /translation="MRTLRAACMAAAALLVAGTCAAQPDKIGTVDTAFQWIGRDHDIV VEAYDDPLVQGVTCYVSRARTGGIKGTLGLAEDRAEASIACRQVGPIAFAQPLKAQQE VFSERMSLLFKRLRVVRMVDAKRNTLVYLSYSDKLIDGSPQNSVTAVPVDRATPIPLK " sig_peptide complement(827856..827924) /locus_tag="Alide_0780" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.802 at residue 23" misc_feature complement(827457..827846) /locus_tag="Alide_0780" /note="CreA protein; Region: CreA; cl01154" /db_xref="CDD:186361" gene complement(827921..830512) /locus_tag="Alide_0781" /db_xref="GeneID:10102810" CDS complement(827921..830512) /locus_tag="Alide_0781" /inference="protein motif:TFAM:TIGR02068" /note="KEGG: dia:Dtpsy_0635 cyanophycin synthetase; TIGRFAM: cyanophycin synthetase; PFAM: Mur ligase middle domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein" /codon_start=1 /transl_table=11 /product="cyanophycin synthetase" /protein_id="YP_004125434.1" /db_xref="GI:319761497" /db_xref="GO:0005524" /db_xref="GO:0016874" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR004101" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011810" /db_xref="InterPro:IPR013221" /db_xref="GeneID:10102810" /translation="MQITRIRALRGPNLWTRSTAMEAVVHCEPHEGDYRTLPGFEDRL RARFPKIGALHPHGADQRLSLAHVLEVAALSLQAQAGCPVTFSRTHETVEPGTSQVVV EYTEEAVGRQAMEQAEALVRAALDDTPFDAAAVVARLRELDEDERIGPSTGAIVDAAV ARGIPFRRLTSGSLVQLGWGSQARRIQAAELDVTSAVAESIAQDKDLTKRLLHAAGVP VPLGRPVADVHDAWKVAEEVGLPVVVKPQDGNQGKGVTVNITTRAQLEAAYATALQYG DEVMVERFLPGHDFRLLVVGHQLVAAARREPPQVLGDGVHTIRELVDIVNQDPRRGSG HGTALTKIRLDDIAIARIAAEGLAPESVPAQGQRVVLRNNANLSTGGSATDVTDDVHP EVAARAIEAAQTIGLHICGVDVICESILRPLEEQNGGIVEVNAAPGLRMHLAPSFGRP RNVGVPMVDALFPPGQDGRIPLVAVTGTNGKTTTTRLIAHLFTAHGWRTAMTNTDGVY VNGRQIDSGDCSGPRSARNALAHPEADAAVLECARGGLLREGLGFDRCQVAVVTNVGE GDHLGLNFIHTVEDVAVLKRVIVQNVAQDGYAVLNAADPHVAAMATSCPGKVIFFAAD RHHPVMATHRAQGNRVVYVDEGHIVAAEGSWRESVPLREIPITRGGAIGFQVENAMAA IAATWALGLPWQTIRRGLAGFVNDSDNAPGRFNVMDYRGATLIADYGHNPDAIRALVQ AVDAIPARQRSVVISGAGDRRDQDIVEQTRTLGAAFDDVVLYQDACQRGRADGEVLAL LKQGLEGAPRTRYVTEIHGEFVAIDHALERLQPGDLCLVLVDQVEEALAHLRRRCGEA AGAAGAA" misc_feature complement(828362..830512) /locus_tag="Alide_0781" /note="cyanophycin synthetase; Provisional; Region: PRK14016" /db_xref="CDD:184454" misc_feature complement(<829556..829882) /locus_tag="Alide_0781" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(829190..>829390) /locus_tag="Alide_0781" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(828458..829057) /locus_tag="Alide_0781" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" misc_feature complement(828161..828382) /locus_tag="Alide_0781" /note="Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875" /db_xref="CDD:190458" gene complement(830584..832764) /locus_tag="Alide_0782" /db_xref="GeneID:10102811" CDS complement(830584..832764) /locus_tag="Alide_0782" /EC_number="6.3.2.29" /inference="protein motif:TFAM:TIGR02068" /note="TIGRFAM: cyanophycin synthetase; KEGG: ctt:CtCNB1_0610 cyanophycin synthetase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding" /codon_start=1 /transl_table=11 /product="cyanophycin synthetase" /protein_id="YP_004125435.1" /db_xref="GI:319761498" /db_xref="GO:0005524" /db_xref="GO:0016874" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011810" /db_xref="GeneID:10102811" /translation="MATFKDIQLLRATYLRGPSVWTYRPILEVWLDLGELEDYPSNKL PGFNERLTRWLPDLVEHTCGVGERGGFIQRLEGGTWMGHVLEHVVIELLNLSGMPAEF GQTREISRRGVYRMVFRCPEEAVARVALDCGHRLLMAAINDQPFDLKAAIHAIKTAIN DRYLGPSTGCIVDAASERRIPHIRLNDGNLVQLGYGAAQRRIWTAESDQTSAIAEGIA QDKDFTKRLLAACGVPVPEGRIVKNAEEAWEVAQEIGFPVTVKPSDGNHARGVTLELS READIKAAFALAEPEGSDVIVEKFIDGIEHRLLVVGGKVVAATKGETVSVHGNGQATL RELVAVLNQDPRRGPEQEYPLDWINLEAGAVQLELKRQNVTPDSVIPQGQSVLLQRNG NMAIDCTDDVHPDVAYYAQLAAKIVGLDIAGMDMILKDVSQPMQGQGAILEVNAGPGL LMHLKPTSGAPRPVGMAIADHLFPREDGPGAGRIPLVGIVGTRHNAFIARLVGWLLQL SGKLTGVASSEGMFLANRRTQKSDTANWAGAHRLLTNRLAQAAVIQTTARSILEEGLA YDRCLVGVVTDMDGYESLADHDVLEQAKMTRVLRTQIDVVLDEGAGVLNADIAQVAEL SALCDGEVLLYSTAADNPAIAAHRANTENGGEGRAVFVRGEQVILATGAGERALGTLA ALSLAGGQRPDTPALLAAIAAAWSMDIAPDLIAAGIKTFEYPGA" misc_feature complement(830596..832746) /locus_tag="Alide_0782" /note="cyanophycin synthetase; Provisional; Region: PRK14016" /db_xref="CDD:184454" misc_feature complement(<831850..832107) /locus_tag="Alide_0782" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene 833014..835326 /locus_tag="Alide_0783" /db_xref="GeneID:10102812" CDS 833014..835326 /locus_tag="Alide_0783" /inference="protein motif:PFAM:PF00005" /note="manually curated; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dia:Dtpsy_0637 ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125436.1" /db_xref="GI:319761499" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:10102812" /translation="MQHHHSVDALGVLPGPFGAGLRAALASDENVQAAFEVDLTPGLR FAPGLLVLTDRRLLAQGTDAAAQEWPLAPGMALRMLDHGGVGTLELHDADRRLALWRF TLGRHPQALHLQQRLERQLALLENPQAVAAPEEEDTPRCAACGTPLPPDSDECPACAR QQPPRASTWVLLRLWRFARPYRKQLAAGFALTLASTAASLVPPYMTIPLMDDILIPYQ SGQQIPTGMVMLYLGGLLLAALLAWGLGWARTYILALVSERIGADLRTTTYEHLLRLS LDYFGSKRTGDLMARIGSETDRINVFLSLNALDFATDVLMIVMTSVILFSINPWLALV TLVPLPFIAWLIHNVRDRLRTGFEKIDRVWSEVTNVLADTIPGIRVVKAFAQESREAQ RFRAANQHNLEVNDRLNKTWSLFAPTVSLMTEVGLLVVWGFGIWLVARNQITVGVLAA FIAYIGRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSNVPDPANPVRVDKVEGAI EMRDIGFRYGSRTVIRNLSLDIRPGEMIGLVGHSGSGKSTLVNLISRFYDVSDGAILV DGVDIRRMAVSDFRRHIGLVLQEPFLFFGTIAENIAYGRPDATRDEIVAAARAAHAHE FILRLPHGYDSLVGERGQGLSGGERQRISIARALLIDPRILILDEATSAVDTETEKEI QKALDNLVQGRTTIAIAHRLSTLRKADRLVVMDRGEVVEVGPHDELMAQQGAYWRLYE AQARRAEEDAEAAGVRVESTRQHSAHPAGK" misc_feature 833614..835230 /locus_tag="Alide_0783" /note="ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132" /db_xref="CDD:31327" misc_feature <833758..834381 /locus_tag="Alide_0783" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature 834535..835230 /locus_tag="Alide_0783" /note="MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the...; Region: ABC_MTABC3_MDL1_MDL2; cd03249" /db_xref="CDD:73008" misc_feature 834631..834654 /locus_tag="Alide_0783" /note="Walker A/P-loop; other site" /db_xref="CDD:73008" misc_feature order(834640..834645,834649..834657,834775..834777, 835015..835020,835111..835113) /locus_tag="Alide_0783" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73008" misc_feature 834766..834777 /locus_tag="Alide_0783" /note="Q-loop/lid; other site" /db_xref="CDD:73008" misc_feature 834943..834972 /locus_tag="Alide_0783" /note="ABC transporter signature motif; other site" /db_xref="CDD:73008" misc_feature 835003..835020 /locus_tag="Alide_0783" /note="Walker B; other site" /db_xref="CDD:73008" misc_feature 835027..835038 /locus_tag="Alide_0783" /note="D-loop; other site" /db_xref="CDD:73008" misc_feature 835099..835119 /locus_tag="Alide_0783" /note="H-loop/switch region; other site" /db_xref="CDD:73008" gene 835341..835829 /locus_tag="Alide_0784" /db_xref="GeneID:10102813" CDS 835341..835829 /locus_tag="Alide_0784" /inference="similar to AA sequence:KEGG:Dtpsy_0638" /note="KEGG: dia:Dtpsy_0638 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125437.1" /db_xref="GI:319761500" /db_xref="GeneID:10102813" /translation="MNTTTTTPVPLDLWRNPHGRLMLRLAGGTEPVAVTPVRAFPIAA PLEGLSLVGPDGHELAWVPRLDALPAAARALIEEEFAAREFVPTITRIRSVSSFSTPS TWEVDTDRGAAQLVLKGEEDIRRLAGRTKLLIAASDGLQFHVPDVTALDRASRKLLER FL" misc_feature 835437..835826 /locus_tag="Alide_0784" /note="Domain of unknown function (DUF1854); Region: DUF1854; pfam08909" /db_xref="CDD:149847" gene 835970..836410 /locus_tag="Alide_0785" /db_xref="GeneID:10102814" CDS 835970..836410 /locus_tag="Alide_0785" /inference="similar to AA sequence:KEGG:Dtpsy_0639" /note="KEGG: dia:Dtpsy_0639 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125438.1" /db_xref="GI:319761501" /db_xref="GeneID:10102814" /translation="MQLPPVVRSPPQWRPQGADLYSTGASGAAPVRPVNPANPVESMD RLGEGAIVREPTKPTAPDEENRDWTLAEARKEAPKEAEEPPKEPIYKQLLELIQSMWR ASGSAVELAQDINKTTLQERLAQQVQDRQSPTYSDPKVKRTGGL" gene 836534..838588 /locus_tag="Alide_0786" /db_xref="GeneID:10102815" CDS 836534..838588 /locus_tag="Alide_0786" /inference="protein motif:TFAM:TIGR00231" /note="KEGG: vap:Vapar_5542 elongation factor G; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain-containing protein" /codon_start=1 /transl_table=11 /product="small gtp-binding protein" /protein_id="YP_004125439.1" /db_xref="GI:319761502" /db_xref="GO:0005525" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR005517" /db_xref="GeneID:10102815" /translation="MTTVSPSPVAHIRTLALVGASAAGKTTLAEALLHASGAIGTVGS VERGSTVSDHDPQEIKTQHSLQSSVMHLAHGGCRIHLVDAPGLPDFIGQSLPALEAVE TCAVVINAATGIEPMARRMMDYAAERRQDRLIVVNKIDAEGVQLAALLVDIQAAFGAE CLPLNLPDAGATRVVDCFFNREGHSDFGSVADAHRALVEQVVDVDGDFVERYLNDGDI DAGELHAPLEQALREGHLIPVCFVSARSGAGVPELLDVITRLLPNPAEGNPPDFFKGE GECAELIHARPDPAAHVLAQVFKISIDPYVGKLAFVRVHQGTITPSSQLFIGDGRKPF KVGHLFLQQGKDHVEVPSAGPGDICTIGKIDELHYDAVLHDAAEDDHIHLRPLPFPVP VHGVAIRPRRRGDEQRLWEIMGRLVAEDPCLRLEHLASTNETVVYGLGELHLRMLLER LQAGYKFEVETRPPRIAYRETIGQGAAAQYRHKKQSGGAGQFGEVHLRVEPLPRGAGF EFVDQVKGGAIPGQFMPAVEKGVREALAEGVIAGYPVQDIRVIVHDGKSHAVDSKEVA FVTAGKKAAQAAIREAAPTVLEPVARLTITVPDGATGAVTGDLSSRRGLVSGTDTPRP GQVAITAQVPMAELLDYQSRLNALTAGQGTYTLALSHYEAVPPQVQQQLAGQYRAKEE QE" misc_feature 836573..837325 /locus_tag="Alide_0786" /note="Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved...; Region: EF-G_bact; cd04170" /db_xref="CDD:133370" misc_feature 836585..838555 /locus_tag="Alide_0786" /note="elongation factor G; Reviewed; Region: PRK12740" /db_xref="CDD:183713" misc_feature 836588..836611 /locus_tag="Alide_0786" /note="G1 box; other site" /db_xref="CDD:133370" misc_feature order(836591..836593,836597..836599,836609..836614, 836621..836623,836630..836635,836735..836740, 836792..836797,836864..836869,836975..836977, 836987..836989) /locus_tag="Alide_0786" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133370" misc_feature order(836594..836614,836720..836725,836789..836791, 836945..836947,836951..836956,837260..837262, 837266..837268) /locus_tag="Alide_0786" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133370" misc_feature order(836717..836731,836735..836737) /locus_tag="Alide_0786" /note="Switch I region; other site" /db_xref="CDD:133370" misc_feature 836720..836722 /locus_tag="Alide_0786" /note="G2 box; other site" /db_xref="CDD:133370" misc_feature 836780..836791 /locus_tag="Alide_0786" /note="G3 box; other site" /db_xref="CDD:133370" misc_feature 836786..836842 /locus_tag="Alide_0786" /note="Switch II region; other site" /db_xref="CDD:133370" misc_feature 836942..836953 /locus_tag="Alide_0786" /note="G4 box; other site" /db_xref="CDD:133370" misc_feature 837260..837268 /locus_tag="Alide_0786" /note="G5 box; other site" /db_xref="CDD:133370" misc_feature 837410..837658 /locus_tag="Alide_0786" /note="EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide...; Region: EFG_mtEFG_II; cd04088" /db_xref="CDD:58095" misc_feature 837935..838228 /locus_tag="Alide_0786" /note="EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor...; Region: EFG_mtEFG1_IV; cd01434" /db_xref="CDD:58274" misc_feature 838295..838531 /locus_tag="Alide_0786" /note="EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor...; Region: EFG_mtEFG_C; cd03713" /db_xref="CDD:58065" gene complement(838602..839534) /locus_tag="Alide_0787" /db_xref="GeneID:10102816" CDS complement(838602..839534) /locus_tag="Alide_0787" /EC_number="3.1.3.5" /inference="protein motif:PRIAM:3.1.3.5" /note="KEGG: vei:Veis_1630 5-nucleotidase; PFAM: 5-nucleotidase" /codon_start=1 /transl_table=11 /product="5'-nucleotidase" /protein_id="YP_004125440.1" /db_xref="GI:319761503" /db_xref="InterPro:IPR010394" /db_xref="GeneID:10102816" /translation="MALTLDDKLVVAISSRALFDFEEENRIFEHGDDRAYVALQLARL DVPAPPGVAFSLVRKLLAFNGAEHQRVEVVLLSRNDPVSGMRVFRSCQAHGLPSVQRG VFTQGRDPFRYLRPLGAHLFLSANETDVRSALHLGYPAARVLTESVQAGDAHPHEVRI AFDGDAVLFSDEAERVYQSEGLAAFQRHERDKAAQPLPEGPFKPLLAALHRLQQAGSA DMRIRTALVTARSAPAHERAIRTLMDWNITVDEAMFLGGLPKGEFLREFEPDFFFDDQ TGHVDSAARHVPAGHVSSGIANAAAGAVQAAQAP" misc_feature complement(838647..839423) /locus_tag="Alide_0787" /note="5'-nucleotidase; Region: 5-nucleotidase; pfam06189" /db_xref="CDD:148034" gene complement(839539..840768) /locus_tag="Alide_0788" /db_xref="GeneID:10102817" CDS complement(839539..840768) /locus_tag="Alide_0788" /inference="protein motif:TFAM:TIGR02120" /note="KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain" /codon_start=1 /transl_table=11 /product="general secretion pathway protein f" /protein_id="YP_004125441.1" /db_xref="GI:319761504" /db_xref="GO:0008565" /db_xref="InterPro:IPR003004" /db_xref="InterPro:IPR011850" /db_xref="InterPro:IPR018076" /db_xref="GeneID:10102817" /translation="MPAYSFEALDSQGHLRRGTLDADSPKAARNMLRAQALVPLDVEA LSPDTAPGSAPTLAQRLFTRPVFNATALAIWTRQLAGLVGAGLPLERALTALADEADD ERQRHLVAALRAEVNAGSTFARALAQHPREFSDIYCAVIGAGEGSGGLGQVLESLADD LEARQQLRAKLIGAALYPAIVTLVAIVIVLFLVGYVVPQVASVFAGSKRALPLLTVLM LALSDFVRGYGWAVLSAFILIAAGARAALARPRFREKFDAAWLRLPLVGKLARGYNAA RFAGTLAMLAGAGVPILRALQAAAETLNNRALRADALEALVLVREGAPLASALAQKKR FPGLVAMFARLGEQTGQLPTMLARAASQLGTEVQRRAMQLATILEPLLIVTMGLVVML IVLAVLQPIIELNQFVK" misc_feature complement(839545..840759) /locus_tag="Alide_0788" /note="general secretion pathway protein F; Region: GspF; TIGR02120" /db_xref="CDD:162711" misc_feature complement(840232..840546) /locus_tag="Alide_0788" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" misc_feature complement(839569..839937) /locus_tag="Alide_0788" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene complement(840823..841818) /locus_tag="Alide_0789" /db_xref="GeneID:10102818" CDS complement(840823..841818) /locus_tag="Alide_0789" /inference="protein motif:TFAM:TIGR03558" /note="KEGG: ajs:Ajs_0664 luciferase family protein; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup" /codon_start=1 /transl_table=11 /product="luciferase family oxidoreductase, group 1" /protein_id="YP_004125442.1" /db_xref="GI:319761505" /db_xref="InterPro:IPR016048" /db_xref="InterPro:IPR019949" /db_xref="GeneID:10102818" /translation="MTTQPLLSMLDLVAVREGGTVAQALEIAVRTARHAESLGFTRYW LAEHHNMPGIASSATAVLVGHVAGATRSIRVGSGGIMLPNHAPLVVAEAFGTLAELYP GRIDLGLGRAPGTDGATMRALRRDRVETEADFPRDVAELQQLLAPAQPGQRIVAVPGA GTQVPIWLLGSSLFSAQLAAHMGLPYAFASHFAPRLLQAAIDLYRQLFRPSAVLLQPY VMIGVPVIAAPTDEEAEYLASSTYQRVLGIITGQRGLLRPPVENYLPGLPPAERAAIA DFLAVGVVGGPQTVRAGLRALAQATRADEFMLVSDVFDPELRLRSLEIAAQANNA" misc_feature complement(<841255..841770) /locus_tag="Alide_0789" /note="Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892" /db_xref="CDD:189181" misc_feature complement(840835..841767) /locus_tag="Alide_0789" /note="Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]; Region: COG2141" /db_xref="CDD:32324" gene 842007..842534 /locus_tag="Alide_0790" /db_xref="GeneID:10102819" CDS 842007..842534 /locus_tag="Alide_0790" /inference="similar to AA sequence:KEGG:Ajs_0665" /note="KEGG: ajs:Ajs_0665 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125443.1" /db_xref="GI:319761506" /db_xref="GeneID:10102819" /translation="MGFFSRLFQPRADGLQAPSDWTRLPDSNASELVLFDEEARKLVA QFDIDAAIVTHQRWLPWLGEVLKGARDEHLRPEAVADDARSELGQWLHGSGREALGHF PAFDMLMRRHHFFHQQAAVLIRHAEAGETLQAEQAYKACQHASRQVVLLLKELQRGLV RGRRPAERRRDKSVV" misc_feature 842145..>842411 /locus_tag="Alide_0790" /note="diguanylate cyclase; Provisional; Region: PRK09894" /db_xref="CDD:182133" gene complement(842544..843944) /locus_tag="Alide_0791" /db_xref="GeneID:10102820" CDS complement(842544..843944) /locus_tag="Alide_0791" /inference="protein motif:TFAM:TIGR02533" /note="TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; KEGG: dia:Dtpsy_0645 general secretory pathway protein E; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="general secretory pathway protein e" /protein_id="YP_004125444.1" /db_xref="GI:319761507" /db_xref="GO:0005524" /db_xref="GO:0008565" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013369" /db_xref="GeneID:10102820" /translation="MRHPLPYAFARSSQLLLEDDGQQLVLWHGPQPDACALSEVLRKH AVQQFMPLDAAQLAQRISAAYAQSESSAATVVSEVEEGADLSRMMQELPAVEDLLESA GDAPIIRMLNALLTQAVRDGASDIHIEPYERHSSVRFRVDGTLREVVQPNRALHAALI SRLKIMADLDISEKRLPQDGRISLRLGTRAIDVRVSTLPNAHGERAVLRLLDKSESKL SLESVGMQGGVLARFEQLIAQPHGIILVTGPTGSGKTTTLYAALARLDASRSNIMTVE DPIEYELPGVGQTQVNGKIDLTFAKALRAILRQDPDVIMIGEIRDFETAQIAIQASLT GHLVLATLHTNDAASAITRLTDMGVEPFLLSSSLLGVLAQRLVRKYCGHCHGGDHGAG CEHCGHTGYAGRTGVFELLVVDDAIRTQIHGQAAEADVRAQALAGGMTLMRDDGERLI AAGITSREEVLRVTRD" misc_feature complement(842553..843938) /locus_tag="Alide_0791" /note="general secretory pathway protein E; Region: type_II_gspE; TIGR02533" /db_xref="CDD:131585" misc_feature complement(842805..843461) /locus_tag="Alide_0791" /note="PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129" /db_xref="CDD:29995" misc_feature complement(843180..843203) /locus_tag="Alide_0791" /note="Walker A motif; other site" /db_xref="CDD:29995" misc_feature complement(order(842991..842996,843114..843119, 843123..843125,843180..843188,843198..843200)) /locus_tag="Alide_0791" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29995" misc_feature complement(842991..843008) /locus_tag="Alide_0791" /note="Walker B motif; other site" /db_xref="CDD:29995" gene complement(843955..846288) /locus_tag="Alide_0792" /db_xref="GeneID:10102821" CDS complement(843955..846288) /locus_tag="Alide_0792" /inference="protein motif:TFAM:TIGR02517" /note="KEGG: dia:Dtpsy_0646 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein" /codon_start=1 /transl_table=11 /product="general secretion pathway protein d" /protein_id="YP_004125445.1" /db_xref="GI:319761508" /db_xref="GO:0008565" /db_xref="InterPro:IPR001775" /db_xref="InterPro:IPR004846" /db_xref="InterPro:IPR005644" /db_xref="InterPro:IPR013356" /db_xref="InterPro:IPR018254" /db_xref="GeneID:10102821" /translation="MPSFSRRQLRTALHSIAASALLVCATAQIHAQTTNRTHAGSVRP SEPVTLNFANADIEAVARTMATITGRNVVVDPRVKGQLTLVTENAVTPAAAFQQFLAA LRLQGFTVVESGGLYKVVPEADAKLQTGTVSVSQGGAGGTPAGGQIVTQIFKLNFENA NNLVPVLRPLISPNNTINVNPGNNSLVITDYADNLQRLARIVAAMDVANATDVEVIPL QHAIASDLAPLVSRLIEGSGGTGTAAAPAAAQGQTDTSFKTTLLPEPRSNALIVRAAN PARLALVRSLVARLDQPAAPGSSAASGNIHVVYLKNADAVKLAATLRAALQAGNLGAG AGTSANGNSGTGLGSGLTQTSMAGGTAQSGLGTNTASSSAGGLGAGASTGLNRSGTDN QPSTGGQIQADPTTNSLIISAPEPQYRQLRAVIDKLDGKRAQVLIESLIVEVSANKVA EFGIQWQTAFGNYGNGAVGVIGTNSGVAGGNIIDLAVAAATGNYASLTSSAIGNGMNV AIAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFPTGSYAN TGGNGGAVNPFTTVERKDVGLMLRVRPTINENGTVKLTLYQEVSKVNESTLTNVNGPS TSKRSIESTVLVDDGSVIVLGGLLEDSYSLNQDKVPVMGDLPVLGALFRNENRSRKKT NLMVFLRPMVIRDNATSDALVMDRYEAIRALQQNTQPAPSTVMRAVSDAPVLPPLQGA APGAGAQRAPLAPLVPNPPAPARATPAATSSELYSPQ" sig_peptide complement(846193..846288) /locus_tag="Alide_0792" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.929) with cleavage site probability 0.929 at residue 32" misc_feature complement(844180..846141) /locus_tag="Alide_0792" /note="general secretion pathway protein D; Region: type_II_gspD; TIGR02517" /db_xref="CDD:162900" misc_feature complement(844987..>845124) /locus_tag="Alide_0792" /note="Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958" /db_xref="CDD:146539" misc_feature complement(844207..844713) /locus_tag="Alide_0792" /note="Bacterial type II and III secretion system protein; Region: Secretin; cl02829" /db_xref="CDD:164025" gene complement(846293..847108) /locus_tag="Alide_0793" /db_xref="GeneID:10102822" CDS complement(846293..847108) /locus_tag="Alide_0793" /inference="similar to AA sequence:KEGG:Ajs_0668" /note="KEGG: ajs:Ajs_0668 general secretory pathway N transmembrane protein" /codon_start=1 /transl_table=11 /product="general secretory pathway n transmembrane protein" /protein_id="YP_004125446.1" /db_xref="GI:319761509" /db_xref="GeneID:10102822" /translation="MSRRPPSRSLTATPRAPWRWAVAGLCLGALPALALWAPARWLAA GVQQASGGQVLLEQARGTVWTGSARLVLTGGAGSDDRAALPGRLAWRLRPAWGGAQAS IMADCCTAEPLALRAALGLGSARVQVADGSSQWPAAVLGGLGTPWNTVQPQGRLQLST QGLALQWSDGRMQLQGQAQLDALGMSTRLSTLRPMGSYRLVLQGGRHGEAPTLQLSTL DGALLLSGSGQWVGQRLRFTGEARAAPEREAALANLLNIIGRRSGARSIITLG" sig_peptide complement(847004..847108) /locus_tag="Alide_0793" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.982 at residue 35" gene complement(847142..847651) /locus_tag="Alide_0794" /db_xref="GeneID:10102823" CDS complement(847142..847651) /locus_tag="Alide_0794" /inference="protein motif:PFAM:PF04612" /note="PFAM: General secretion pathway M protein; KEGG: ajs:Ajs_0669 hypothetical protein" /codon_start=1 /transl_table=11 /product="general secretion pathway m protein" /protein_id="YP_004125447.1" /db_xref="GI:319761510" /db_xref="InterPro:IPR007690" /db_xref="GeneID:10102823" /translation="MSTSRPRALAAALRTHWTGLAAREQTLVLVAAAMLGLALLWWLL LAPALAQLRASPARHAALDAELQRMQTLQAEALRLRDMPRVQGGEALRALQGALARQL GPAAQMHVAGDRATVTLKGVPPEALAQWLAQVRSTARAVPVEARLVRSGADAPRWDGT LVLALPSPG" sig_peptide complement(847499..847651) /locus_tag="Alide_0794" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.823) with cleavage site probability 0.759 at residue 51" misc_feature complement(847193..847621) /locus_tag="Alide_0794" /note="General secretion pathway, M protein; Region: GspM; cl01222" /db_xref="CDD:186390" gene complement(847648..848880) /locus_tag="Alide_0795" /db_xref="GeneID:10102824" CDS complement(847648..848880) /locus_tag="Alide_0795" /inference="protein motif:PFAM:PF05134" /note="PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L" /codon_start=1 /transl_table=11 /product="general secretion pathway l" /protein_id="YP_004125448.1" /db_xref="GI:319761511" /db_xref="GO:0008565" /db_xref="InterPro:IPR007812" /db_xref="GeneID:10102824" /translation="MSTLVLTLPPGPQAPAAEYSYALTADGHNAIRQACTSAALLPDP GRTGEVVAVVPARALSWQRVTLPQGALAQASRLRAILEGLLEEHLLEEPARLHFALQP GAQSGSPVWVAVCDRAWLHEALQALEAAGRPVDRVVPEFAPGPTASGQQECEVIGAPE DTQIVLTGHGPEQAVAVLPLSAAPALAAMAPAAEDAPPVRAEPAVAALAEHLLGRPVQ IHTASQRALAAARGDWDLAQFDLASSGRTRALRRLGAAANAFARAPQWRAARWGLGLA VAVQLIGLNLWAWQDRQALAAKQAGVRGILTQTFPRIQAVVDAPVQMERELALLRQAA GSMAQRDLEPLMAAAGAALPAARLPGQIEYAGGELLLRGVELPPEELAAANQRLAADG YAARSQDGALLLRPQERP" misc_feature complement(<848461..848871) /locus_tag="Alide_0795" /note="GspL cytoplasmic actin-ATPase-like region; Region: GspL; pfam05134" /db_xref="CDD:191202" misc_feature complement(<847843..848064) /locus_tag="Alide_0795" /note="GspL periplasmic domain; Region: GspL_C; cl14909" /db_xref="CDD:196870" gene complement(848948..849925) /locus_tag="Alide_0796" /db_xref="GeneID:10102825" CDS complement(848948..849925) /locus_tag="Alide_0796" /inference="similar to AA sequence:KEGG:Ajs_0671" /note="KEGG: ajs:Ajs_0671 general secretion pathway protein K" /codon_start=1 /transl_table=11 /product="general secretion pathway protein k" /protein_id="YP_004125449.1" /db_xref="GI:319761512" /db_xref="GeneID:10102825" /translation="MRRAARQAGAALLAAMLTVTLVATFAATALWQQWRAIEVESAER ARIQSAWILIGALDWSRLILREDSLARGGDGTDNLSEPWAVPLEEARLSTFLAASNNV AQVEDASTDTANAFLSGQITDQQGLLNLRNLAGDRQVDATALRQFARLFDYLGLPRGQ LDLLARQMLRAQVQGGDAGTAPLLPQSVSQLGWWGLPQQSVAALAPYVTLLPARTTVN LNTASAVVLWASADGLDMADAQRLVQARESRHFRSEADAAKLVGKTGAIGSATHTVSS SYFEVRGRLRLDSTVVEERSLVFKQRGEARTLWRERGGLASAAAATAGR" sig_peptide complement(849845..849925) /locus_tag="Alide_0796" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.563 at residue 27" misc_feature complement(849002..849832) /locus_tag="Alide_0796" /note="General secretion pathway protein K; Region: GspK; pfam03934" /db_xref="CDD:146520" gene complement(849922..850611) /locus_tag="Alide_0797" /db_xref="GeneID:10102826" CDS complement(849922..850611) /locus_tag="Alide_0797" /inference="similar to AA sequence:KEGG:Ajs_0672" /note="KEGG: ajs:Ajs_0672 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125450.1" /db_xref="GI:319761513" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10102826" /translation="MRHPPKRLRGFTLVELLVAIAVMALLAIVSWRGLDGMVRSQQQT REHADAVLILQTVMDQWGADLDALQAVEHTEPIAWDGQVLRLTRRGMRQPDEGAVVVA WALRNVDGAAHWLRWQSAPVRTRAEWFDAWDRAARWARTPDEAERRQEAVLMPLAGWQ LFFYRGGAWANALSTNTAGSLPQSPGGLNSAAASIPEGVRLQLTLPPGGALAGVITRD WASPVLGGGKS" gene complement(850613..850978) /locus_tag="Alide_0798" /db_xref="GeneID:10102827" CDS complement(850613..850978) /locus_tag="Alide_0798" /inference="protein motif:TFAM:TIGR01707" /note="KEGG: dia:Dtpsy_0652 general secretion pathway protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J" /codon_start=1 /transl_table=11 /product="general secretion pathway protein i" /protein_id="YP_004125451.1" /db_xref="GI:319761514" /db_xref="GO:0008565" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR003413" /db_xref="InterPro:IPR010052" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10102827" /translation="MNMRARHAGFTLVEVLVALAIVAIALMAGLQATSALTRNAARQT DVVLAHLCAENELVKVRLSRQMPSIGNARVACEQARRGYEVAVTVSPTPNPQFRRVDA QVFDAQLPVLRLSTIVGRY" sig_peptide complement(850880..850978) /locus_tag="Alide_0798" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.953) with cleavage site probability 0.543 at residue 33" misc_feature complement(850619..850855) /locus_tag="Alide_0798" /note="Bacterial type II secretion system protein I/J; Region: GSPII_IJ; pfam02501" /db_xref="CDD:145570" gene complement(851247..851756) /locus_tag="Alide_0799" /db_xref="GeneID:10102828" CDS complement(851247..851756) /locus_tag="Alide_0799" /inference="protein motif:TFAM:TIGR01708" /note="KEGG: dia:Dtpsy_0653 general secretion pathway protein H; manually curated; TIGRFAM: general secretion pathway protein H" /codon_start=1 /transl_table=11 /product="general secretion pathway protein h" /protein_id="YP_004125452.1" /db_xref="GI:319761515" /db_xref="GO:0008565" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR002416" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10102828" /translation="MKLAHPRPADAVDLALPGHGRRPPGRGSRATAQGGFTLLELLVV IAIMALATAGVGLALRDSGATQLQREGERLAVLLESARAQSRASGAAVRWRADAQGFH FEGLPAAARLPGHWLDGGTSVRGPGELWLGPEPLIGAQQVVIVNQAHPGRAVRVATDG LRPFAAQAL" misc_feature complement(<851448..851663) /locus_tag="Alide_0799" /note="general secretion pathway protein H; Region: typeII_sec_gspH; TIGR01708" /db_xref="CDD:130769" gene complement(851784..852191) /locus_tag="Alide_0800" /db_xref="GeneID:10102829" CDS complement(851784..852191) /locus_tag="Alide_0800" /inference="protein motif:TFAM:TIGR01710" /note="KEGG: aav:Aave_0925 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G" /codon_start=1 /transl_table=11 /product="general secretion pathway protein g" /protein_id="YP_004125453.1" /db_xref="GI:319761516" /db_xref="GO:0008565" /db_xref="InterPro:IPR000983" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR010054" /db_xref="InterPro:IPR012902" /db_xref="InterPro:IPR013545" /db_xref="GeneID:10102829" /translation="MAAGFTLIELMVVLVIIGVLAALIVPNVLDRADDARVTAARTDI ANLSQALKLYRLDNQRYPTAEQGLQALIARPATAPVPNNWRPYLEKLPNDPWGHPYQY LNPGIKGEVDVMSFGADGQSGGEGKNADIGSWQ" misc_feature complement(851790..852062) /locus_tag="Alide_0800" /note="Bacterial type II secretion system protein G; Region: GSPII_G; pfam08334" /db_xref="CDD:192005" gene 852292..852738 /locus_tag="Alide_0801" /db_xref="GeneID:10102830" CDS 852292..852738 /locus_tag="Alide_0801" /inference="similar to AA sequence:KEGG:Dtpsy_0655" /note="KEGG: dia:Dtpsy_0655 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125454.1" /db_xref="GI:319761517" /db_xref="GeneID:10102830" /translation="MATPSYHRWAPRLATLALWVLAGASAVYWGLQLSGRVAGPAPAA AAPEPVAADAQALARLLGAQAASAPEAPAAASRFVLLGLLAGTASGDGAALIAVDGKP ARPYRVGASVEPGLVLQSLSRREARLGASVEGATTLTLEMPRPKGE" sig_peptide 852292..852384 /locus_tag="Alide_0801" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.609) with cleavage site probability 0.263 at residue 31" gene complement(852739..853305) /locus_tag="Alide_0802" /db_xref="GeneID:10102831" CDS complement(852739..853305) /locus_tag="Alide_0802" /inference="protein motif:PFAM:PF00300" /note="PFAM: Phosphoglycerate mutase; KEGG: dia:Dtpsy_0656 phosphoglycerate mutase" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase" /protein_id="YP_004125455.1" /db_xref="GI:319761518" /db_xref="InterPro:IPR013078" /db_xref="GeneID:10102831" /translation="MSTLWLVRHARPLAAPGLCYGRLDVPADTQASRAAAQALARALP PKVTAVHHSPLQRCELLALELRALRADLASNPDPRILEMDFGGWEGRAWNALPQADIA AWAADLGSHAPGGGEPLAAMLARVAQALRDAAASALPQGGDVVWITHAGVARCVQWLQ AHGAARAPQSHEWPEAAPGFGSWVQVAL" misc_feature complement(852754..853296) /locus_tag="Alide_0802" /note="Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP; cl11399" /db_xref="CDD:196215" gene complement(853302..854120) /locus_tag="Alide_0803" /db_xref="GeneID:10102832" CDS complement(853302..854120) /locus_tag="Alide_0803" /inference="protein motif:PFAM:PF02654" /note="PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dia:Dtpsy_0657 cobalamin-5-phosphate synthase CobS" /codon_start=1 /transl_table=11 /product="cobalamin-5-phosphate synthase cobs" /protein_id="YP_004125456.1" /db_xref="GI:319761519" /db_xref="GO:0008818" /db_xref="InterPro:IPR003805" /db_xref="GeneID:10102832" /translation="MQALRHYLLAVQFFTRLPVTGRLAAWVGYSPAMLRASSAHFPGV GWLVAAVAIAIYAALWQALGGPQGGSQGFVPLVAAVGSTIATVLVTGGFHEDGLADVA DGLGGAYRRERALEIMKDSRIGAFGAMALVLALAAKLALLAHLGSLGLTCVLAALAGG HVLSRLWPLAVVRALPHVGDTATSKSKPLADQITGAALAAAALWCFLPLALVWQALGA HVLIAAVLASALGAAWMLWRFARRLQGFTGDCLGATQQVAEIGFYLGAAIALAR" misc_feature complement(853308..854120) /locus_tag="Alide_0803" /note="Cobalamin-5-phosphate synthase; Region: CobS; cl00415" /db_xref="CDD:185982" gene complement(854183..855748) /locus_tag="Alide_0804" /db_xref="GeneID:10102833" CDS complement(854183..855748) /locus_tag="Alide_0804" /inference="protein motif:TFAM:TIGR01124" /note="KEGG: dia:Dtpsy_0658 threonine dehydratase; TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Threonine dehydratase domain-containing protein" /codon_start=1 /transl_table=11 /product="threonine dehydratase, biosynthetic" /protein_id="YP_004125457.1" /db_xref="GI:319761520" /db_xref="GO:0004794" /db_xref="InterPro:IPR000634" /db_xref="InterPro:IPR001721" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR002173" /db_xref="InterPro:IPR005787" /db_xref="GeneID:10102833" /translation="MTQPLTPFDYLTRILTARVYDVALESDLQPARALSRRMHNKVLL KREDQQPVFSFKLRGAYNKMAQLSPEQLARGVICASAGNHAQGVAMSASKLGTRAVIV MPTTTPQVKIDAVKTLGGEVVLSGDSYSDAYEHAVRLQQEEGLTFVHPFDDPDVIAGQ GTIAMEMLRQLQALGSHRLDAVFVPIGGGGLIAGVANYIKAVSPQTKVIGVQMNDSDA MARSAREHARVQLPDVGLFADGTAVKLVGEETFRVAHALVDDYVIVDTDAVCAAIKDV FVDTRSIVEPSGALGVAAIKQYVARHKTKGETYATILSGANMNFDRLRFVAERADVGE EREALFAVTIPEERGSFKRFCQVVGALPGGPRNVTEFNYRISHETRAHVFVGLSTHGR GESEKIAKNFLKHGFESLDLTHDELAKEHLRHLVGGRSALARDERLMRFTFPERPGAL FKFLSLMQPTWNISLFHYRNQGADYGRILVGMQVPAEDAAAFDAFLQQLDYPYVEETQ NPAYRLFLQANGS" misc_feature complement(854198..855733) /locus_tag="Alide_0804" /note="threonine dehydratase; Reviewed; Region: PRK09224" /db_xref="CDD:181709" misc_feature complement(854792..855718) /locus_tag="Alide_0804" /note="Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562" /db_xref="CDD:107205" misc_feature complement(order(854792..854803,854900..854908, 854918..854920,854927..854932,854939..854941, 855146..855151,855602..855607,855692..855697, 855704..855706,855713..855718)) /locus_tag="Alide_0804" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:107205" misc_feature complement(order(854807..854809,855176..855190, 855500..855502,855581..855583)) /locus_tag="Alide_0804" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107205" misc_feature complement(855581..855583) /locus_tag="Alide_0804" /note="catalytic residue [active]" /db_xref="CDD:107205" misc_feature complement(854474..854740) /locus_tag="Alide_0804" /note="First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_1; cd04906" /db_xref="CDD:153178" misc_feature complement(854687..854704) /locus_tag="Alide_0804" /note="putative Ile/Val binding site [chemical binding]; other site" /db_xref="CDD:153178" misc_feature complement(854201..854443) /locus_tag="Alide_0804" /note="Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_2; cd04907" /db_xref="CDD:153179" misc_feature complement(854390..854407) /locus_tag="Alide_0804" /note="putative Ile/Val binding site [chemical binding]; other site" /db_xref="CDD:153179" gene 856030..856479 /locus_tag="Alide_0805" /db_xref="GeneID:10102834" CDS 856030..856479 /locus_tag="Alide_0805" /inference="protein motif:PFAM:PF02566" /note="PFAM: OsmC family protein; KEGG: dia:Dtpsy_0659 OsmC family protein" /codon_start=1 /transl_table=11 /product="osmc family protein" /protein_id="YP_004125458.1" /db_xref="GI:319761521" /db_xref="InterPro:IPR003718" /db_xref="GeneID:10102834" /translation="MECTVSWTGNAGTRSGMGFIAETGSGHVLAMDGAPDASRPENGG QNLAPRPMETVLAGTGGCTAYDVVLILKRGRHDVRGCSVRLTSERADTDPKVFTRIHM QFTVTGCGIPAAAVERAIAMSHEKYCSASIMLGKTAQITTGFEIVEA" misc_feature 856030..856476 /locus_tag="Alide_0805" /note="OsmC-like protein; Region: OsmC; cl00767" /db_xref="CDD:193933" gene complement(856490..857107) /locus_tag="Alide_0806" /db_xref="GeneID:10102835" CDS complement(856490..857107) /locus_tag="Alide_0806" /inference="similar to AA sequence:KEGG:Dtpsy_0660" /note="KEGG: dia:Dtpsy_0660 ubiquinone biosynthesis protein" /codon_start=1 /transl_table=11 /product="ubiquinone biosynthesis protein" /protein_id="YP_004125459.1" /db_xref="GI:319761522" /db_xref="GeneID:10102835" /translation="MDRFLIAADSALRTLRATPPAGAASPAAAVPAAELSAPQKRLSG ALMRVNHVGEVCAQALYMAQSCVTDDAALRSELLAAAREEADHLAWTRERLDQLGSRP SLLNPLWFAGAFAIGLAAARIGDRVSLGFVVETERQVSEHLQGHLGRLPDEDLPSRAI VARMQQDEERHAAQAQAAGAAPLPPPARWLMRAAAKVMTATAHYI" misc_feature complement(<856595..856981) /locus_tag="Alide_0806" /note="Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cl00264" /db_xref="CDD:193737" misc_feature complement(order(856595..856597,856604..856606, 856700..856702,856847..856849,856856..856858, 856946..856948)) /locus_tag="Alide_0806" /note="dinuclear metal binding motif [ion binding]; other site" /db_xref="CDD:153097" gene 857336..858376 /locus_tag="Alide_0807" /db_xref="GeneID:10102836" CDS 857336..858376 /locus_tag="Alide_0807" /inference="protein motif:PFAM:PF00267" /note="PFAM: porin Gram-negative type; KEGG: aav:Aave_0932 porin" /codon_start=1 /transl_table=11 /product="porin gram-negative type" /protein_id="YP_004125460.1" /db_xref="GI:319761523" /db_xref="GO:0005215" /db_xref="InterPro:IPR001702" /db_xref="InterPro:IPR002299" /db_xref="GeneID:10102836" /translation="MKKSLIALAVLAASGAAMAQSSVTLFGIIDTNFGYVDNTNAAGD SKYGIGTSGNATSRLGFRGVEDLGGGLKAGFWLEGEIFGDNGNASGFNFQRESTVRLS GNFGEVRLGRELVPTYRKVSSYDVFGQVGIGMFQGWSNWAGVGTADANGYRQSNIVSY YTPNFSGFTAGAGYGFDEQATGKEGRYAGAFGAYDNGPLSVALSFDRRNVGALGAGTK DNLTVGGSYDLSVVKINALLQQAKYKDVGAASGKYNSYGLGLTAPVGAGEIKAQYVMY DQKAIDSKAHQFALGYVHNLSKRTALYGTVAYLKNKDASNMALQAKQVSTTGPGAGEN QTGVQLGIRHSF" sig_peptide 857336..857395 /locus_tag="Alide_0807" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 at residue 20" misc_feature 857402..858373 /locus_tag="Alide_0807" /note="Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface...; Region: gram_neg_porins; cd00342" /db_xref="CDD:30071" misc_feature order(857402..857404,857420..857422,857426..857434, 857522..857536,857552..857554,857558..857566, 857570..857572,857576..857587,857615..857620, 857624..857638,857663..857671,857792..857794, 857798..857803,858221..858226,858233..858235, 858359..858361,858365..858367,858371..858373) /locus_tag="Alide_0807" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:30071" misc_feature order(857417..857419,857507..857509,857618..857620, 857708..857710,857792..857794) /locus_tag="Alide_0807" /note="eyelet of channel; other site" /db_xref="CDD:30071" gene 858598..859809 /locus_tag="Alide_0808" /db_xref="GeneID:10102837" CDS 858598..859809 /locus_tag="Alide_0808" /inference="protein motif:PFAM:PF00267" /note="PFAM: porin Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type" /codon_start=1 /transl_table=11 /product="porin gram-negative type" /protein_id="YP_004125461.1" /db_xref="GI:319761524" /db_xref="GO:0005215" /db_xref="InterPro:IPR001702" /db_xref="InterPro:IPR001969" /db_xref="GeneID:10102837" /translation="MRLFTKKSIAFAALALCGSGASLAQSAGTSKVELWGIVDVAVRH TNKEGPTQAGLTKMIGGGMSQSRWGINVEEDLGGGSKALVVLENRFDADSGTPAVNAP YFQLAHVGLQGPYGRLTAGRQWNVLFDVVTSTYASFPYSPYMEAYKPELGMAMGARTS NMLKYMFATPDRRWVGALQYSFDENNTATGNPGFPGSAAQIPAYVAGTLNGGAWKTAG GYLRFSAAGAALGGGYLRTTLPGGTDVDAWTLGGSYRTGPWYLTAGYGLNKAKFAAVT SPLVALRNGVDGAILGQFWSGQTNGGFQPGDANKRQLFKVGVGYQMTTQLNLGAHYFR GKQSGSTTGLSNGNADFLVAVADYAFSKRTDAYFGVDHTRISGGNAIVLDSASNARNR TGFTVGLRHRF" sig_peptide 858598..858672 /locus_tag="Alide_0808" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.878 at residue 25" misc_feature 858685..859806 /locus_tag="Alide_0808" /note="Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface...; Region: gram_neg_porins; cd00342" /db_xref="CDD:30071" misc_feature order(858685..858687,858691..858693,858709..858711, 858715..858723,858811..858825,858841..858843, 858847..858855,858859..858861,858865..858876, 858910..858912,858916..858930,858955..858963, 859069..859071,859075..859080,859675..859680, 859687..859689,859792..859794,859798..859800, 859804..859806) /locus_tag="Alide_0808" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:30071" misc_feature order(858706..858708,858796..858798,858910..858912, 859003..859005,859069..859071) /locus_tag="Alide_0808" /note="eyelet of channel; other site" /db_xref="CDD:30071" gene 860058..861041 /locus_tag="Alide_0809" /db_xref="GeneID:10102838" CDS 860058..861041 /locus_tag="Alide_0809" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0664 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125462.1" /db_xref="GI:319761525" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10102838" /translation="MLAFILRRLVQALIVMITVAFIAFMLFQFVGDPVAILLGQDATP QQVAEMRAALGLDKPFVVQFWHFLVNAAQGEFGISLRQGAKVSRLIAERFPATLELSL VAAFIALVVGVPMGVYAALRRGTFMSQLFMTLSLLGVSLPTFLIGILLILVFSVTLGW FPSFGRGEVVQLGWWSTGLLTAKGWHHITLPAITLAIFQLTLIMRLVRAEMLEVLRTD YIKFARARGLTDRAIHFGHALKNTLVPVMTITGLQLGGLIAFAIITETVFQWPGMGLL FIQAVTFADIPVMAAYLCLIALIFVVINLVVDLLYFAVDPRLRVGGKAGGH" misc_feature 860058..861023 /locus_tag="Alide_0809" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" misc_feature 860337..860963 /locus_tag="Alide_0809" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(860385..860390,860397..860402,860415..860417, 860448..860459,860463..860492,860499..860504, 860508..860510,860649..860654,860658..860660, 860664..860666,860673..860678,860682..860684, 860694..860699,860706..860708,860757..860759, 860799..860804,860811..860813,860832..860843, 860850..860855,860880..860885,860913..860918, 860925..860930,860934..860939,860946..860951, 860958..860963) /locus_tag="Alide_0809" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(860466..860510,860832..860849) /locus_tag="Alide_0809" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(860508..860510,860634..860636,860850..860852, 860874..860876,860883..860885,860913..860915) /locus_tag="Alide_0809" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(860709..860747,860763..860768,860778..860780) /locus_tag="Alide_0809" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 861043..862263 /locus_tag="Alide_0810" /db_xref="GeneID:10102839" CDS 861043..862263 /locus_tag="Alide_0810" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="TIGRFAM: amidohydrolase; KEGG: dia:Dtpsy_0665 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004125463.1" /db_xref="GI:319761526" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="InterPro:IPR017439" /db_xref="GeneID:10102839" /translation="MQPMKFKVGGRAFAQIAEFHPELTAFRRDLHAHPELGFEEVYTS ARVREALRAAGVDEVHEGIGRTGVVGVIRGQGRGSGSMIGLRADMDALPMTEHNDFAW KSCKSGLMHGCGHDGHTAMLVGAARYLAGTRRFDGTAVLIFQPGEEGLGGARVMIEDG LFERFPVQAVYAMHNWPAMKPGTVGINDGAMMAAADRITIEITGRGGHGAHPYQTVDV VLVAGHIITAVQGIVSRNVRALDSAVISLCAVQAGDLGAFSVLPGQATLVGTVRAFDP AVQDMVAQRIKDLCNAIALGFGATVTVRYERIYPATINTAGEARFAGDVAAALVGEDN VDRDLEPSMGAEDFSFMLQARPGAYLRLGQGMGAGNSTLHNSRYDFNDDVLPLGAALH AGLVEQAMPLADGQ" misc_feature 861082..862239 /locus_tag="Alide_0810" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature 861103..862236 /locus_tag="Alide_0810" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature order(861379..861381,861385..861387,861484..861486, 861562..861564,862162..862164) /locus_tag="Alide_0810" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature order(861631..861633,861697..861702,861712..861714, 861721..861723,861730..861732,861781..861801, 861817..861822,861826..861828,861844..861852) /locus_tag="Alide_0810" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene 862341..863252 /locus_tag="Alide_0811" /db_xref="GeneID:10102840" CDS 862341..863252 /locus_tag="Alide_0811" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0667 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125464.1" /db_xref="GI:319761527" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10102840" /translation="MQKTLLRWYDSDVAHSFRSSPVAILAALIALVCTFCALFAGWVA PHNPFDLSTLVLSDSRLPPVWMAEGSWKYVLGTDDQGRDILSALIYGARISLVVGLAS VLLSVVLGVALGLVAGFRGGWVDGVLMRLCDVMLSFPAILIALLIAGVARAVFPDAPE SLAFGVLILAISLTGWVQYARTVRGSTLVERNKEYVQAARVTGVAPMRIMRKHVLPNV LGPVMVLATIQVATAIITEATLSFLGVGAPPTSPSLGTLIRIGNDYLFSGEWWITIFP GVMLVLIALSVNLLGDWLRDALNPRLR" sig_peptide 862341..862463 /locus_tag="Alide_0811" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.698) with cleavage site probability 0.695 at residue 41" misc_feature 862434..863234 /locus_tag="Alide_0811" /note="nickel ABC transporter, permease subunit NikC; Region: nickel_nikC; TIGR02790" /db_xref="CDD:131837" misc_feature 862695..863195 /locus_tag="Alide_0811" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(862722..862733,862737..862766,862773..862778, 862782..862784,862860..862865,862869..862871, 862875..862877,862884..862889,862893..862895, 862905..862910,862917..862919,862968..862970, 863010..863015,863022..863024,863043..863054, 863061..863066,863112..863117,863145..863150, 863157..863162,863166..863171,863178..863183, 863190..863195) /locus_tag="Alide_0811" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(862740..862784,863043..863060) /locus_tag="Alide_0811" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(862782..862784,862845..862847,863061..863063, 863106..863108,863115..863117,863145..863147) /locus_tag="Alide_0811" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(862920..862958,862974..862979,862989..862991) /locus_tag="Alide_0811" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 863259..864233 /locus_tag="Alide_0812" /db_xref="GeneID:10102841" CDS 863259..864233 /locus_tag="Alide_0812" /inference="protein motif:TFAM:TIGR01727" /note="TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dia:Dtpsy_0668 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide abc transporter, atpase subunit" /protein_id="YP_004125465.1" /db_xref="GI:319761528" /db_xref="GO:0005524" /db_xref="GO:0015197" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102841" /translation="MSLLEVQNLVVEFPTRRGTLRALDDVSFSIAPGEILGVVGESGA GKSLTGASIIGLLEPPGRVASGQIRLEGQRIDNLPHAQMRHIRGRKIGAIFQDPLTSL NPLYTVGQQLVETILTHLPMSAAQARQRAVDLLKDTGIPAAEQRIDHYPHQFSGGMRQ RVVIALALAAEPQLIVADEPTTALDVSIQAQIIQLLKSICKTRGAAVMLITHDMGVIA ETCDRVAVMYAGRVAEIGPVHEVINRPAHPYTAGLMASIPDMEQDRERLNQIDGAMPR LNAIPNGCAFNPRCPQVFDRCRAERPDLMPAGATQAACWLHAVEKEVA" misc_feature 863265..864206 /locus_tag="Alide_0812" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444" /db_xref="CDD:30793" misc_feature 863265..863966 /locus_tag="Alide_0812" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 863376..863399 /locus_tag="Alide_0812" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(863385..863390,863394..863402,863544..863546, 863790..863795,863892..863894) /locus_tag="Alide_0812" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 863535..863546 /locus_tag="Alide_0812" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 863718..863747 /locus_tag="Alide_0812" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 863778..863795 /locus_tag="Alide_0812" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 863802..863813 /locus_tag="Alide_0812" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 863880..863900 /locus_tag="Alide_0812" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature 863949..864206 /locus_tag="Alide_0812" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene 864230..865246 /locus_tag="Alide_0813" /db_xref="GeneID:10102842" CDS 864230..865246 /locus_tag="Alide_0813" /inference="protein motif:TFAM:TIGR01727" /note="TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dia:Dtpsy_0669 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide abc transporter, atpase subunit" /protein_id="YP_004125466.1" /db_xref="GI:319761529" /db_xref="GO:0005524" /db_xref="GO:0015197" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102842" /translation="MNPAPNPLVRAHDLARTFDVSAPWLNRVIERKPRQLLHAVDGVS FEIEKGKTLALVGESGCGKSTVARLLVGLYEPTRGGFSFDGQDAHAAFKGKGARAMRR RIQMIFQDPYASLNPRWLVQDIIGEPLREHGLVTQAAALKTRVGELLTSVGLAPQDMA KYPHQFSGGQRQRISIARALATEPEFLVCDEPTSALDVSVQAQVLNIMKDLQQKQGLT YLFISHNLAVVRHVSDQVGVMYLGRLVELADKQQLFSQPRHPYTRMLLDAIPKMHDTG RARTPVQGEVPNPLDPPPGCAFNPRCPFANARCRSERPQLLQGEGGARVACHAVEEGR IGRA" misc_feature 864248..865225 /locus_tag="Alide_0813" /note="dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308" /db_xref="CDD:183084" misc_feature 864251..864973 /locus_tag="Alide_0813" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 864398..864421 /locus_tag="Alide_0813" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(864407..864412,864416..864424,864554..864556, 864797..864802,864899..864901) /locus_tag="Alide_0813" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 864545..864556 /locus_tag="Alide_0813" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 864725..864754 /locus_tag="Alide_0813" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 864785..864802 /locus_tag="Alide_0813" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 864809..864820 /locus_tag="Alide_0813" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 864887..864907 /locus_tag="Alide_0813" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature 864956..865216 /locus_tag="Alide_0813" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene 865289..865783 /locus_tag="Alide_0814" /db_xref="GeneID:10102843" CDS 865289..865783 /locus_tag="Alide_0814" /inference="protein motif:PFAM:PF01161" /note="PFAM: PEBP family protein; KEGG: dia:Dtpsy_0671 PEBP family protein" /codon_start=1 /transl_table=11 /product="pebp family protein" /protein_id="YP_004125467.1" /db_xref="GI:319761530" /db_xref="InterPro:IPR005247" /db_xref="InterPro:IPR008914" /db_xref="GeneID:10102843" /translation="MTAFTLTSPDIAAGSTIAQVFEFDGFGCSGKNQSPVLRWSGAPE GTKSFAVNVYDPDAPTGSGFWHWYVIDIPADVTELPADAGAKGGANLPKGARQIRNDY GIYAWGGVCPPPGDKPHRYIFTVHALSVERIEVPDDAPAALTGFMVNANTIAKASFTA TYGR" misc_feature 865301..865774 /locus_tag="Alide_0814" /note="PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea; Region: PEBP_bact_arch; cd00865" /db_xref="CDD:176643" misc_feature order(865451..865456,865478..865480,865484..865486, 865613..865627,865637..865639,865643..865645, 865649..865651) /locus_tag="Alide_0814" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176643" gene complement(865835..866680) /locus_tag="Alide_0815" /db_xref="GeneID:10102844" CDS complement(865835..866680) /locus_tag="Alide_0815" /inference="protein motif:PFAM:PF01418" /note="PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ajs:Ajs_0694 RpiR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="helix-turn-helix protein rpir" /protein_id="YP_004125468.1" /db_xref="GI:319761531" /db_xref="GO:0003700" /db_xref="GO:0005529" /db_xref="InterPro:IPR000281" /db_xref="InterPro:IPR000843" /db_xref="InterPro:IPR001347" /db_xref="GeneID:10102844" /translation="MLDRITASLPSLAPAEQRVARLVLKDPRAFAHLPVRELAERAHV SKPTVVRFCRSMGYDGLADFKLKLAGSVSEGVPFIHRSVDADDKTGDVLVKVVDNAMA AFLQYRNAASTQLLERAAEAIAGTWQTGRRIEFYGAGNSGIVAQDAQHKFFRLGITSL ATSDGHMQVMSATLLGPGDCAVIISNSGRTRDLMDAADIARKNGATTIAITASGSPLA HSCRIHLAADHPEGYDRYSPMVSRLLHLLIIDVLATCVALRIGEPLQPVLQQMKNNLR AKRYT" misc_feature complement(865841..866680) /locus_tag="Alide_0815" /note="DNA-binding transcriptional regulator HexR; Provisional; Region: PRK11302" /db_xref="CDD:183082" misc_feature complement(865916..866335) /locus_tag="Alide_0815" /note="RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose...; Region: SIS_RpiR; cd05013" /db_xref="CDD:88408" misc_feature complement(order(866126..866128,866258..866260)) /locus_tag="Alide_0815" /note="putative active site [active]" /db_xref="CDD:88408" gene 866796..867746 /locus_tag="Alide_0816" /db_xref="GeneID:10102845" CDS 866796..867746 /locus_tag="Alide_0816" /inference="protein motif:TFAM:TIGR00874" /note="KEGG: dia:Dtpsy_0674 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase" /codon_start=1 /transl_table=11 /product="transaldolase" /protein_id="YP_004125469.1" /db_xref="GI:319761532" /db_xref="GO:0004801" /db_xref="InterPro:IPR001585" /db_xref="InterPro:IPR004730" /db_xref="InterPro:IPR018225" /db_xref="GeneID:10102845" /translation="MNQLDALKQFTTVVADTGDFKQLAQFQPRDATTNPSLILKAVQK SEYAPLLKDCVTRWHGRGIDELMDRLIVRFGCEILSLIPGRVSTEVDARLSFDTAATV ARAERIVELYQAEGVHIDRVLIKIAATWEGIQAARRLEERGIHTNLTLLFSFAQAVAC GQAKVQLISPFVGRIYDWYKKQAGSNWDEAAMAGANDPGVQSVRAIYNHYKHFGIATE VMGASFRNTGQIVALAGCDLLTIAPELLAQLAASDAPLARVLDPEAARHVQMAPVQYD EPGFRYALNADAMATEKLAEGIRAFAADAARLEQLMQAAA" misc_feature 866796..867737 /locus_tag="Alide_0816" /note="transaldolase-like protein; Provisional; Region: PTZ00411" /db_xref="CDD:185601" misc_feature 866799..867728 /locus_tag="Alide_0816" /note="Transaldolases including both TalA and TalB; Region: Transaldolase_TalAB; cd00957" /db_xref="CDD:188644" misc_feature order(866841..866843,866889..866891,866895..866900, 867054..867056,867060..867062,867168..867170, 867234..867236,867240..867242,867300..867302, 867315..867317) /locus_tag="Alide_0816" /note="active site" /db_xref="CDD:188644" misc_feature order(867084..867086,867627..867629,867636..867638, 867648..867653,867669..867671,867678..867680, 867690..867692) /locus_tag="Alide_0816" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188644" misc_feature 867168..867170 /locus_tag="Alide_0816" /note="catalytic residue [active]" /db_xref="CDD:188644" gene 867743..869338 /locus_tag="Alide_0817" /db_xref="GeneID:10102846" CDS 867743..869338 /locus_tag="Alide_0817" /EC_number="5.3.1.9" /inference="protein motif:PRIAM:5.3.1.9" /note="KEGG: ajs:Ajs_0697 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI)" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate isomerase" /protein_id="YP_004125470.1" /db_xref="GI:319761533" /db_xref="InterPro:IPR001672" /db_xref="InterPro:IPR018189" /db_xref="GeneID:10102846" /translation="MSFADPHTRCDRTPAWQRLHAHYDAAGRGFDLRAAFERDARRFT RFSQQAPYVFADLSKNLIDAQTEALLLQLARECGLEAYRDAMFAGAPINGTEQRAVMH WLLREPSPAQSGQALEATDTVANGLREVHATLDAMLRLAERVRADEAITDIVNIGIGG SDLGPAMVVKALDDLRHPGKRLHFVSNVDGMELGSLLRQLRPANTLFLIASKTFTTLE TMTNAHAAREWFLAQGGSQDGLVRHFYALTTNLEAAAQFGIETTLGFWDWVGGRYSLW SAIGLPIAIAIGAQGFRDLLAGAHAMDEHFRTTPLEANLPVRLALLDLWYRNFHGFAS RSMAPYSHGLRRLPAYLQQLEMESNGKGVDAQGDPLPYATAPVVWGEPGTNGQHAFFQ MIHQGPDTVPVEFIALREPGRDLKGQHPRLVANALAQARALMMGRPHEQDGHRRFAGN RPSTFLLLECLDPASLGALIALYEHRVFASGALWGINSFDQWGVELGKTIARDLEPRL ATGDVQGLDASTAGLLRRLAPMA" misc_feature 867758..869323 /locus_tag="Alide_0817" /note="glucose-6-phosphate isomerase; Reviewed; Region: pgi; PRK00179" /db_xref="CDD:178917" misc_feature 868133..868573 /locus_tag="Alide_0817" /note="Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015" /db_xref="CDD:88410" misc_feature order(868214..868216,868220..868225,868373..868381, 868388..868390,868553..868555) /locus_tag="Alide_0817" /note="active site" /db_xref="CDD:88410" misc_feature order(868298..868309,868394..868396,868406..868408, 868415..868417) /locus_tag="Alide_0817" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88410" misc_feature 868751..869254 /locus_tag="Alide_0817" /note="Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016" /db_xref="CDD:88411" misc_feature order(868763..868765,868799..868801,868811..868813, 868820..868825,868883..868885,868889..868897, 868904..868909,868916..868921,868928..868930, 868994..868996,869000..869002,869024..869026, 869033..869035) /locus_tag="Alide_0817" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88411" misc_feature order(868799..868801,868811..868813) /locus_tag="Alide_0817" /note="active site" /db_xref="CDD:88411" gene complement(869461..871107) /locus_tag="Alide_0818" /db_xref="GeneID:10102847" CDS complement(869461..871107) /locus_tag="Alide_0818" /inference="protein motif:TFAM:TIGR02348" /note="KEGG: aav:Aave_0945 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1" /codon_start=1 /transl_table=11 /product="chaperonin groel" /protein_id="YP_004125471.1" /db_xref="GI:319761534" /db_xref="InterPro:IPR001844" /db_xref="InterPro:IPR002423" /db_xref="InterPro:IPR018370" /db_xref="GeneID:10102847" /translation="MAAKDVVFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSF GAPTVTKDGVSVAKEIELKDKIQNMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVRE GSKYVAAGLNPMDLKRGIDKAVTALVEELKKASKATTTSKEIAQVGSISANSDSSIGE IIANAMDKVGKEGVITVEDGKSLNNELDVVEGMQFDRGYLSPYFINNPEKQVALLDNP FVLLFDKKISNIRDLLPTLEAVAKAGRPLLIIAEDVEGEALATLVVNTIRGILKVVAV KAPGFGDRRKAMLEDIAILTGGKVIAEEVGLSLEKVTLADLGQAKTIEVGKENTTIID GAGNADDIQARVKQIRIQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK KARVEDALHATRAAVEEGIVAGGGVALLRARQAVGQLKGDNPDQDAGIKLILKAIEAP LREIVANAGGEPSVVVNEVLNGKGNYGFNAANDTYGDMLEMGILDPTKVTRTALQNAA SVASLLLTTEAMVAEAPKDDAPAGGMPDMGGMGGMGGMGM" misc_feature complement(869527..871104) /locus_tag="Alide_0818" /note="chaperonin GroEL; Reviewed; Region: groEL; PRK12849" /db_xref="CDD:183791" misc_feature complement(869539..871098) /locus_tag="Alide_0818" /note="GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344" /db_xref="CDD:48161" misc_feature complement(order(869542..869562,869569..869571, 869731..869733,869950..869952,869956..869958, 870337..870339,870421..870423,870517..870519, 870880..870882,870889..870891,870901..870903, 870925..870927,870931..870933,870961..870963, 870967..870972,870985..870987,870991..871002, 871033..871035,871084..871086,871096..871098)) /locus_tag="Alide_0818" /note="ring oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:48161" misc_feature complement(order(869623..869625,869629..869631, 869746..869748,869863..869865,869914..869916, 870658..870660,870835..870837,870847..870849, 871009..871017)) /locus_tag="Alide_0818" /note="ATP/Mg binding site [chemical binding]; other site" /db_xref="CDD:48161" misc_feature complement(order(869707..869709,869716..869721, 869725..869727,869752..869754,869806..869808, 870781..870783)) /locus_tag="Alide_0818" /note="stacking interactions; other site" /db_xref="CDD:48161" misc_feature complement(order(869878..869883,869983..869985, 870529..870531,870550..870552,870685..870687)) /locus_tag="Alide_0818" /note="hinge regions; other site" /db_xref="CDD:48161" gene complement(871205..871495) /locus_tag="Alide_0819" /db_xref="GeneID:10102848" CDS complement(871205..871495) /locus_tag="Alide_0819" /inference="protein motif:PFAM:PF00166" /note="PFAM: Chaperonin Cpn10; KEGG: dac:Daci_5660 co-chaperonin GroES" /codon_start=1 /transl_table=11 /product="chaperonin cpn10" /protein_id="YP_004125472.1" /db_xref="GI:319761535" /db_xref="InterPro:IPR001476" /db_xref="InterPro:IPR018369" /db_xref="InterPro:IPR020818" /db_xref="GeneID:10102848" /translation="MNLRPLADRVIVKRLENETKTASGIVIPDNAAEKPDQGEVVAVG PGRLDEDGDRIAMSVKVGDRVLFGKYSGQTVKVHGDELLVMKEDDLFAVVEK" misc_feature complement(871214..871492) /locus_tag="Alide_0819" /note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts...; Region: cpn10; cd00320" /db_xref="CDD:73192" misc_feature complement(order(871217..871225,871271..871273, 871277..871279,871292..871294,871322..871324, 871385..871390,871469..871471,871478..871480, 871484..871486,871490..871492)) /locus_tag="Alide_0819" /note="oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:73192" misc_feature complement(871403..871444) /locus_tag="Alide_0819" /note="mobile loop; other site" /db_xref="CDD:73192" misc_feature complement(order(871328..871330,871361..871363)) /locus_tag="Alide_0819" /note="roof hairpin; other site" /db_xref="CDD:73192" gene complement(871697..872725) /locus_tag="Alide_0820" /db_xref="GeneID:10102849" CDS complement(871697..872725) /locus_tag="Alide_0820" /inference="protein motif:TFAM:TIGR00125" /note="KEGG: ajs:Ajs_0701 cytidyltransferase-like protein; TIGRFAM: cytidyltransferase-related domain protein; PFAM: NUDIX hydrolase; cytidylyltransferase" /codon_start=1 /transl_table=11 /product="cytidyltransferase-related domain protein" /protein_id="YP_004125473.1" /db_xref="GI:319761536" /db_xref="GO:0003824" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR004820" /db_xref="InterPro:IPR004821" /db_xref="GeneID:10102849" /translation="MYDAAVLIGRFQPVHNGHLALLREALARARQAVVVVGSAFQART PKNPFTWQERAQMLRAALPEPERARLTMLPMRDYYDEPRWADAVRQTVAQATPARARL ALVGHFKDSSSGYLRAFPGWDLIRMERQGTIDATAIRDAYLGASASTPEAALAPWAPH IPAATRAWLEQFAHTAHYPALQEEWRMLRAYRNSWACAPYPPVFVTVDALLRCQGRVL LIRRAHAPGKGLWALPGGFVEPHDTLWQSCLRELAEETHCPLPEERLRQALRAVRVFD HPERSQRGRVITHAYFFDLDDDALPEVRGGDDAAHAQWVAQEQLAGMEDQFHDDHWHI IGQLLAPG" misc_feature complement(871709..872725) /locus_tag="Alide_0820" /note="bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional; Region: PRK05379" /db_xref="CDD:180046" misc_feature complement(872162..872713) /locus_tag="Alide_0820" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(order(872315..872326,872672..872683)) /locus_tag="Alide_0820" /note="active site" /db_xref="CDD:173912" misc_feature complement(order(872321..872323,872672..872674, 872681..872683)) /locus_tag="Alide_0820" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(872672..872683) /locus_tag="Alide_0820" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature complement(872315..872326) /locus_tag="Alide_0820" /note="KMSKS motif; other site" /db_xref="CDD:173912" misc_feature complement(871754..872113) /locus_tag="Alide_0820" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or...; Region: Nudix_Hydrolase; cl00447" /db_xref="CDD:189099" misc_feature complement(order(871958..871984,872012..872020)) /locus_tag="Alide_0820" /note="nudix motif; other site" /db_xref="CDD:72880" gene complement(872739..873920) /locus_tag="Alide_0821" /db_xref="GeneID:10102850" CDS complement(872739..873920) /locus_tag="Alide_0821" /EC_number="2.5.1.6" /inference="protein motif:TFAM:TIGR01034" /note="TIGRFAM: S-adenosylmethionine synthetase; KEGG: dia:Dtpsy_0683 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase" /codon_start=1 /transl_table=11 /product="s-adenosylmethionine synthetase" /protein_id="YP_004125474.1" /db_xref="GI:319761537" /db_xref="GO:0004478" /db_xref="GO:0005524" /db_xref="InterPro:IPR002133" /db_xref="GeneID:10102850" /translation="MANDFLFTSESVSEGHPDKVADQISDAILDAIFEQDPRSRVAAE TLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSN DIAQGVDHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGR LPFLRPDAKSQVTMRYLDGKPHSIDTVVLSTQHSPDQSETATKMKASFTEAIIEEIIK PVLPKEWLKDTKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDP TKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVISDERI AQLVHEYFDLRPKGIIQMLDLLRPIYAKTAAYGHFGREEPEFTWERTDKAQALRAAAG L" misc_feature complement(872742..873914) /locus_tag="Alide_0821" /note="S-adenosylmethionine synthetase; Validated; Region: PRK05250" /db_xref="CDD:179974" misc_feature complement(873618..873908) /locus_tag="Alide_0821" /note="S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438" /db_xref="CDD:189548" misc_feature complement(873204..873572) /locus_tag="Alide_0821" /note="S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772" /db_xref="CDD:190418" misc_feature complement(872781..873200) /locus_tag="Alide_0821" /note="S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773" /db_xref="CDD:111646" gene 874054..874908 /locus_tag="Alide_0822" /db_xref="GeneID:10102851" CDS 874054..874908 /locus_tag="Alide_0822" /inference="protein motif:PFAM:PF03279" /note="PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase" /codon_start=1 /transl_table=11 /product="lipid a biosynthesis acyltransferase" /protein_id="YP_004125475.1" /db_xref="GI:319761538" /db_xref="GO:0008415" /db_xref="InterPro:IPR004960" /db_xref="GeneID:10102851" /translation="MPSIFRLLSALPLWLLHAIGALLGWVAFCASPTYRRRFLANAAR AGYRLRDVRAAVAHAGRMVAEAPRLWLAPEPPPCEVRNAECVQRAWEQGRGIVFLTPH IGCFEMSVQEGARRWSPQHGSFTILYRPARQPWLARVMQTARNRPGIAAVPTSLQGVR QMLKALRAGRAVGLLPDQVPPQGQGLWSPFFGQSAYTMTLAARLVQQTGAAVILARCE RLPRGRGYVLHLQALEQPLAPTLDAAVLQINQAMERLIRQSPDQYLWGYARYKQPRAE AQQPESIA" misc_feature 874288..874866 /locus_tag="Alide_0822" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984" /db_xref="CDD:153246" misc_feature order(874357..874359,874366..874368,874372..874374, 874435..874446,874585..874593) /locus_tag="Alide_0822" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153246" gene 874905..875786 /locus_tag="Alide_0823" /db_xref="GeneID:10102852" CDS 874905..875786 /locus_tag="Alide_0823" /inference="protein motif:PFAM:PF03279" /note="PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase" /codon_start=1 /transl_table=11 /product="lipid a biosynthesis acyltransferase" /protein_id="YP_004125476.1" /db_xref="GI:319761539" /db_xref="GO:0008415" /db_xref="InterPro:IPR004960" /db_xref="GeneID:10102852" /translation="MTARLASRAGIALLNLLGRLPLPALRALGAWIGRLLFVLAAPRR KVALRNLELCFPDVPEQQRRAWARESFESFCQTFLDRGWLWSGSEALVRSRVKLVGAV QELEGDTPTIVFAPHFYSMDAGGLALPLNTGREFTSIFATNPDPALDAWFMGGRQRFG NVRMLNRADGVKPIIACLRKGGLLYLLPDMDYGRNDSVFVPFFAMPDAATIPSLSRFA RLGRAKVVALYSRMTPEGYVAELTPAWENFPTDDHVADTARMNRELEAAIRTMPAQYY WVHKRFKTRPEGQPSLY" misc_feature 875211..875753 /locus_tag="Alide_0823" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984" /db_xref="CDD:153246" misc_feature order(875253..875255,875262..875264,875268..875270, 875322..875333,875472..875480) /locus_tag="Alide_0823" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153246" gene complement(875827..876729) /locus_tag="Alide_0824" /db_xref="GeneID:10102853" CDS complement(875827..876729) /locus_tag="Alide_0824" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_1352 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125477.1" /db_xref="GI:319761540" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102853" /translation="MNFDLSDLRAFVAVADLASFRAAAEALHLSQPALSRRVDKLEQA LGFRLLERSTRKVELNAMGRAFLPRARHVLAELEGALLGMADLAERIHGLVTVACIPS AVDNFVAQAARGFQQRFPRIRLRVLDQPAPEILMSVARAEADFGISYLGTQEPDLDFD PLVDEPFVLACRSDHPLAQRPAIEWAELAGHDCIALAPGSGNRLLIEQGLAGNGARPR WSCEAQHVPAVLSLIEAGVGVGAVPQLALAGATSAALVSIPLVAPRIARSVGIVRRRG RPLSPAAQAFHDAVAGAAQRLRFQ" misc_feature complement(875836..876723) /locus_tag="Alide_0824" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(876538..876717) /locus_tag="Alide_0824" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(875860..876450) /locus_tag="Alide_0824" /note="TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440" /db_xref="CDD:176131" misc_feature complement(order(876025..876030,876034..876039, 876055..876072,876346..876366,876370..876372, 876382..876384,876391..876396,876400..876405)) /locus_tag="Alide_0824" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176131" gene 876826..877806 /locus_tag="Alide_0825" /db_xref="GeneID:10102854" CDS 876826..877806 /locus_tag="Alide_0825" /inference="similar to AA sequence:KEGG:Veis_1351" /note="KEGG: vei:Veis_1351 fis family transcriptional regulator" /codon_start=1 /transl_table=11 /product="fis family transcriptional regulator" /protein_id="YP_004125478.1" /db_xref="GI:319761541" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10102854" /translation="MFPIRWKAALGCLALISLAVVTQAQAQAPWPARAITLIVPFAAG GGTDSIARDIAKNMAERLGQPVVVDNRGGAGGAIGAQAVAKAAPDGYTLLFATSTFAT NAAVEPRLPYDPVKDFAPVAMIGRGPLLVVTSKQLGVGSVAQLVAAAKARPEGLNFCS AGNGSINHLAGEMFRQKTGLSMTHVPFKGSAPATVELLAGRVDLFFATVPTIQSHLKE NQLGLLAVTSAKRSRLFPNLPTLAEAGVPGYDVTTWWGVLAPAKTPASIVEALNRAVN ESAAAEPVKGRLQHEGADPVRLAPAAFGEELRKELALWRNVAAAPGMQLR" sig_peptide 876826..876906 /locus_tag="Alide_0825" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.977 at residue 27" misc_feature 876841..877797 /locus_tag="Alide_0825" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 876973..877767 /locus_tag="Alide_0825" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 877821..878801 /locus_tag="Alide_0826" /db_xref="GeneID:10102855" CDS 877821..878801 /locus_tag="Alide_0826" /inference="similar to AA sequence:KEGG:RALTA_B1946" /note="KEGG: cti:RALTA_B1946 conserved hypothetical protein UPF0065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125479.1" /db_xref="GI:319761542" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102855" /translation="MQHTLSRRTFVGASAALALTGWARAQGGYPNKPITVIVPYAPGG QGDVFARLVGEPLARALGQPVVVDNRPGASGALGTRLAARAPADGYTLLMGQTGEIAI NGAAMKNPGYDALKDLRAVALVGDAPLVLAVPAASPFKSLADLVQAARERPGSVAYAS SGTATPGHLAAAELAARTGTQMTHIPYKGAGQAIADLIGAQVQFFFASASSIVGYVKG GKVRALAVSKPARIAALPGVPAVSDTLPDFAFSLWGGYFAPRGTPDAMVQRLAGEIGR IIAQGPLRERLEAEGSAVEAGTPKSFDAFVRAEADKYARLVKAAGATLEG" sig_peptide 877821..877898 /locus_tag="Alide_0826" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.731 at residue 26" misc_feature 877857..878783 /locus_tag="Alide_0826" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 877968..878786 /locus_tag="Alide_0826" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 878828..879889 /locus_tag="Alide_0827" /db_xref="GeneID:10102856" CDS 878828..879889 /locus_tag="Alide_0827" /EC_number="1.1.1.85" /inference="protein motif:PRIAM:1.1.1.85" /note="KEGG: vei:Veis_1349 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="YP_004125480.1" /db_xref="GI:319761543" /db_xref="InterPro:IPR001804" /db_xref="InterPro:IPR019818" /db_xref="GeneID:10102856" /translation="MKIVVLPGDGIGPETMAATIEVLQAASQRFGLNLQLDHDVAGHE SLRRHGATVTPALLAKVKAADGLMLGPMSTYDFKDESKGEINPSKFFRKELDLYANIR PARTWLGVPHKVDAFDLVVVRENTEGFYADRNIASGGSEMLITPDVAVSLRRITRSCC ERIARAAFELAMTRRRHVSIVHKANVLRIGDGMFIEECQRVARDFPEVQVDEFIVDAM MAHVVRAPQRFDVIVTTNMFGDILSDLTAELSGSLGLGGSVNAGRDHAMGQAAHGSAP DIAGQDIANPFSLILSAGQLLGWHGQRHGLPAFLAAAEAIEHTAAAAVEAGEVTPDAG GRLGTAATGRAFAQRLQGA" misc_feature 878828..879739 /locus_tag="Alide_0827" /note="Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445" /db_xref="CDD:193821" gene 879889..880701 /locus_tag="Alide_0828" /db_xref="GeneID:10102857" CDS 879889..880701 /locus_tag="Alide_0828" /inference="protein motif:PFAM:PF04909" /note="PFAM: amidohydrolase 2; KEGG: bbt:BBta_3003 hypothetical protein" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004125481.1" /db_xref="GI:319761544" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10102857" /translation="MVAGACDCHTHVFGPRADYPMVDARHYTPGPAPLAALRAHLAGL GLERVVLVQPSVYGTDNRCMLDALARLDGAGRGIVVLEDGVDAAALRELHARGVRINL ESAGLRDIAGARALLQAWSARVADLGWHVQLYAAQPVVQALADDLARLPSSVVLDHFA LADVMPGGDALTDLLRTGCVHVKLSAPYRLASPALGGAWARHWVDAVPGALLWASDWP HTARGPGRAAHEVSAYRAIPANGLRQEIARWLPSAELRRRVLVDNPARLYGF" misc_feature 879895..880698 /locus_tag="Alide_0828" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature 879898..880689 /locus_tag="Alide_0828" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature order(879913..879915,879919..879921,880276..880278, 880360..880362,880534..880536) /locus_tag="Alide_0828" /note="active site" /db_xref="CDD:30035" gene complement(880689..881381) /locus_tag="Alide_0829" /db_xref="GeneID:10102858" CDS complement(880689..881381) /locus_tag="Alide_0829" /inference="protein motif:TFAM:TIGR03598" /note="KEGG: aav:Aave_0983 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related" /codon_start=1 /transl_table=11 /product="ribosome biogenesis gtp-binding protein ysxc" /protein_id="YP_004125482.1" /db_xref="GI:319761545" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR019987" /db_xref="GeneID:10102858" /translation="MSTTPHVPGPGLPDAKAALGWMHTARFLTTAAQLSQLPAITVPE IAFVGRSNAGKSTCINTLTQQRQLAFASKKPGRTQHINLFALGKQGATDAVLADLPGY GYAAVSRSDKQRWQQVMANYLVSRQGLTGIVLLCDPRLGLTELDEALLEVVRPRVEQG LKFLVLLTKADKLTRAEQAKALSIARLQAGGGEVRMFSALKRQGVDEVAQLLWQWAHP TEEPAAEPDQNP" misc_feature complement(880734..881252) /locus_tag="Alide_0829" /note="The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and...; Region: YihA_EngB; cd01876" /db_xref="CDD:133278" misc_feature complement(881214..881237) /locus_tag="Alide_0829" /note="G1 box; other site" /db_xref="CDD:133278" misc_feature complement(order(880785..880790,880869..880871, 880875..880877,881088..881090,881148..881156, 881163..881171,881211..881231)) /locus_tag="Alide_0829" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133278" misc_feature complement(881139..881159) /locus_tag="Alide_0829" /note="Switch I region; other site" /db_xref="CDD:133278" misc_feature complement(881148..881150) /locus_tag="Alide_0829" /note="G2 box; other site" /db_xref="CDD:133278" misc_feature complement(881079..881090) /locus_tag="Alide_0829" /note="G3 box; other site" /db_xref="CDD:133278" misc_feature complement(order(880995..881000,881007..881051, 881070..881081)) /locus_tag="Alide_0829" /note="Switch II region; other site" /db_xref="CDD:133278" misc_feature complement(880869..880880) /locus_tag="Alide_0829" /note="G4 box; other site" /db_xref="CDD:133278" misc_feature complement(880782..880790) /locus_tag="Alide_0829" /note="G5 box; other site" /db_xref="CDD:133278" gene 881464..882102 /locus_tag="Alide_0830" /db_xref="GeneID:10102859" CDS 881464..882102 /locus_tag="Alide_0830" /inference="protein motif:PFAM:PF00034" /note="PFAM: cytochrome c class I; KEGG: ajs:Ajs_0710 cytochrome c, class I" /codon_start=1 /transl_table=11 /product="cytochrome c class i" /protein_id="YP_004125483.1" /db_xref="GI:319761546" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR003088" /db_xref="InterPro:IPR008168" /db_xref="InterPro:IPR009056" /db_xref="GeneID:10102859" /translation="MKLLASLLMAAALAAPAFPTLAAGETPAQQKAAKPDLTKGAASY GAVCAACHAADGNSTIAVNPSLAQQHPEYLVKQLQDFKSGKRADPVMQGMAAMLSDDD MRNVAGWLASQKAKEGFAKDKDLVALGERIYRGGIQDRSIAACAGCHSPNGAGIPAQY PRLSGQHSDYTVKQLVDFRDGKRGNNAQMRDVAAKLNDREIKAVADYIAGLR" sig_peptide 881464..881532 /locus_tag="Alide_0830" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.961 at residue 23" misc_feature 881557..881868 /locus_tag="Alide_0830" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature <881893..882099 /locus_tag="Alide_0830" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 882231..884429 /locus_tag="Alide_0831" /db_xref="GeneID:10102860" CDS 882231..884429 /locus_tag="Alide_0831" /inference="similar to AA sequence:KEGG:Dtpsy_0691" /note="KEGG: dia:Dtpsy_0691 ResB family protein" /codon_start=1 /transl_table=11 /product="resb family protein" /protein_id="YP_004125484.1" /db_xref="GI:319761547" /db_xref="GeneID:10102860" /translation="MSDTSLGHGHAWRPHATRSMTELLASMRFAIALLTVICIASVIG TVLKQHEPVTNYVNQFGPFWADLFLALKLNAVYSAWWFLLILAFLVVSTSLCIARHAP KYIADLRNYKENIREKSLQAFHHKATVPLAGEAPQAAAQRIGQLLVSGGWKVRLQQRP TPAGDGWMVAAKAGAANKLGYIAAHSAIVLVCLGGLLDGDLIVRAQMWFGGKTPYAGG GLIAEVKPEHRLSERNPTFRGNLVVAEGTQSATAILTQSDGVLLQELPFSVELKKFVV EHYSTGMPKLFASDIVIHDRATGKATPARVEVNHPVSYQGVEIYQSSFDDGGSEVKLH ARPMVPGAQPFDVEGVIGGSTRLTHTGLGEAMTLEFTGLRVLNVENFGDAGAAGSGAD VRKVDLRESIESRLGAGNKTVGKRELRNVGPSISYKLRDAAGQAREFHNFMLPVDTGD GQPVFLLGVRETPSEPLRYLRVPVDAEGGMDGFLRMRLALADPQQREQAVRRYAAVAV DGSRPELAAQLALSAGRALALFAGDVAATGAAADDGAGSGGRPRGGLQAISDFMEANV PEAERSRASEVLVRILNGALFELAQMTRERAGLAPLPQDESTRAFMTQAVLSLSDAQA YPAPLVFELRDFRQVQASVFQVARAPGKNVVYLGCALLILGVFAMLYVRDRRLWVWLA PEGGGARATMALSANRRTLDTDREFAQLRTQLLEAETETETAQPPHGGTP" misc_feature 882309..>883217 /locus_tag="Alide_0831" /note="ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]; Region: ResB; cl09125" /db_xref="CDD:186833" misc_feature <884124..884327 /locus_tag="Alide_0831" /note="ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]; Region: ResB; cl09125" /db_xref="CDD:186833" gene 884426..885760 /locus_tag="Alide_0832" /db_xref="GeneID:10102861" CDS 884426..885760 /locus_tag="Alide_0832" /inference="protein motif:TFAM:TIGR03144" /note="KEGG: ajs:Ajs_0712 cytochrome c assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein ccsb" /protein_id="YP_004125485.1" /db_xref="GI:319761548" /db_xref="InterPro:IPR002541" /db_xref="InterPro:IPR017562" /db_xref="GeneID:10102861" /translation="MNTATTTLTLNEGYFARRNWLDWLFALAVLAGGLFALQRYAAYM DVYEKGILLATMPGAIWLGWFWRPLRALMLAVAACALLAIGLYQNGGAGDLARADTVF GLKYFLSSQSAILWMSMLFFMSTAFYWVGMFTRGQGQAMMRIGSRIAWVAVALALIGT MVRWYESYQIGPDIGHIPVSNLYEVFVMFCWMTALFYLYYEEQYQTRALGGFVMLVVS AAVGFLLWYTVVREAHEIQPLVPALKSWWMKLHVPANFIGYGTFALSAMVAFAYLVKQ QAAETRWYKLAPLWLLGVVLCFEPIVFRQGATEGGGAYWMVYFGISALIVAGILFARR RIAEQLPALQVLDDVMYKSIAVGFAFFTIATVLGALWAAEAWGGYWSWDPKETWALIV WLNYAAWLHMRLMKGLRGTMSAWWALVGLVVTTFAFLGVNMFLSGLHSYGTL" misc_feature 884870..885751 /locus_tag="Alide_0832" /note="Cytochrome C assembly protein; Region: Cytochrom_C_asm; cl00504" /db_xref="CDD:186041" gene 885934..886932 /locus_tag="Alide_0833" /db_xref="GeneID:10102862" CDS 885934..886932 /locus_tag="Alide_0833" /inference="protein motif:PFAM:PF00174" /note="PFAM: oxidoreductase molybdopterin binding; KEGG: dia:Dtpsy_0693 sulfite oxidase subunit YedY" /codon_start=1 /transl_table=11 /product="oxidoreductase molybdopterin binding protein" /protein_id="YP_004125486.1" /db_xref="GI:319761549" /db_xref="GO:0009055" /db_xref="InterPro:IPR000572" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102862" /translation="MLIHTHDNGFDHHSASEITPRAVYEQRRALLRLMAGGAAGALLA SWAGRQALAQQVQPPGRLAALPGVRSAVVGAVTMEKPTDYKDATGYNNFYEFGTDKTD PARNAHTLKTRPWTVEVEGLVNKPRRFDIDELLRLSPMEERIYRLRCVEGWSMVIPWV GYSLAELIRRVEPQGSAKYVEFVTLADKATMPYVGSRILDWPYTEGLRVDEAMHPLTL LAFGMYGEVLPNQNGAPVRIVVPWKYGFKSAKSIVKIRFTEKEPATAWNKAARNEYGF YSNVNPGVDHPRWSQATERRIGEDGLFAKKRKTLLFNGYEAQVGQLYAGMDLKKFY" misc_feature 886195..886836 /locus_tag="Alide_0833" /note="Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199" /db_xref="CDD:185822" misc_feature order(886201..886203,886207..886209,886213..886215, 886378..886380,886540..886542,886627..886629, 886642..886644,886666..886668,886675..886677, 886681..886686) /locus_tag="Alide_0833" /note="Moco binding site; other site" /db_xref="CDD:29401" misc_feature 886378..886380 /locus_tag="Alide_0833" /note="metal coordination site [ion binding]; other site" /db_xref="CDD:29401" gene 886932..887573 /locus_tag="Alide_0834" /db_xref="GeneID:10102863" CDS 886932..887573 /locus_tag="Alide_0834" /inference="protein motif:PFAM:PF01794" /note="PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: dia:Dtpsy_0694 ferric reductase domain protein transmembrane component" /codon_start=1 /transl_table=11 /product="ferric reductase domain protein transmembrane component domain protein" /protein_id="YP_004125487.1" /db_xref="GI:319761550" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR013130" /db_xref="GeneID:10102863" /translation="MRQARPGGQAAADRALRHPAAKPLLFVLCLLPLAWLVYAAAFDR LGANPAEALIRSMGDWTLRLLCLTLAVTPLRLAARLPALARFRRMLGVYTFFYAALHL LCYAWFDMGLDGGEIARDVAKRPFILVGMCGFVLLLVLAATSFNRAVRWLGGRRWQRL HRSVYLVAGLALLHFFWMRAGKNDFAEVAVYAAILAALLLARPWLRRGRSPGP" misc_feature 887040..887504 /locus_tag="Alide_0834" /note="Ferric reductase like transmembrane component; Region: Ferric_reduct; cl01043" /db_xref="CDD:194017" gene complement(887659..888462) /locus_tag="Alide_0835" /db_xref="GeneID:10102864" CDS complement(887659..888462) /locus_tag="Alide_0835" /inference="similar to AA sequence:KEGG:Dtpsy_0695" /note="KEGG: dia:Dtpsy_0695 beta-lactamase domain protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_004125488.1" /db_xref="GI:319761551" /db_xref="GeneID:10102864" /translation="MPLEPLELYRDQHHACLMFSDLIEEDGQAVQANQFLIVDGDTGA IIDPGGNLAFNELFMGMSRYFPPHRLSYLLASHADPDIIASLDRWLSSTRALLVISRV WERFAPHFAKLGKTENRIIGVPDGGGLLPLGRHELLLLPAHFMHSEGNFHFYDPVSRI LFTGDLGVSMTSGAEARVPVTALAPHVARMEAFHRRYMVSNKVLRLWTRMARQLDIAM LAPQHGAPIMGQQAITDFFDWLDGLECGTDLFDERSYQIPTARIDPVAH" misc_feature complement(887794..888375) /locus_tag="Alide_0835" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(888531..889820) /locus_tag="Alide_0836" /db_xref="GeneID:10102865" CDS complement(888531..889820) /locus_tag="Alide_0836" /inference="protein motif:TFAM:TIGR01048" /note="KEGG: dia:Dtpsy_0696 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2" /codon_start=1 /transl_table=11 /product="diaminopimelate decarboxylase" /protein_id="YP_004125489.1" /db_xref="GI:319761552" /db_xref="GO:0008836" /db_xref="InterPro:IPR000183" /db_xref="InterPro:IPR002986" /db_xref="GeneID:10102865" /translation="MIPSVLPGQPQLHYRDQALYLEDRRLSDLAREHGTPLYVYSQAS MLQALAAYQRGFAGRRVQICYAMKANSSLAVLQLFAQHGCGFDIVSGGELERVMAAGG DPAKVIFSGVGKTRAEMRQALEAGIGCFNVESEAELEVLSEVAQSMGLRAPISIRVNP NVDAKTHPYISTGLKGNKFGIAHERTLDTYRRAAQLPGLRVVGIDCHIGSQITEETPY LDAMDRLLDLVQAIEAAGIAIHHIDFGGGLGIDYNGDTPPAADALWSSLLAKLDARGY GDRLLMIEPGRSLVGNAGVCLTQVLYLKPGEQKNFCVVDAAMNDLPRPAMYQAYHAIV PLDAAAKAPEQVYDVVGPICESGDWLGKDRSLAVAAGDMLAVLSTGAYCSSMGSTYNT RARPAEVLVDGAQAHLIRAREGISDIFRCERLIPPKS" misc_feature complement(888552..889781) /locus_tag="Alide_0836" /note="diaminopimelate decarboxylase; Region: lysA; TIGR01048" /db_xref="CDD:188105" misc_feature complement(888618..889724) /locus_tag="Alide_0836" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase; Region: PLPDE_III_DapDC; cd06828" /db_xref="CDD:143501" misc_feature complement(order(888651..888653,888663..888665, 888675..888677,888759..888761,888840..888842, 888852..888854,888960..888971,889080..889085, 889191..889193,889200..889202,889206..889208, 889350..889352,889491..889493,889560..889562, 889617..889619,889623..889625)) /locus_tag="Alide_0836" /note="active site" /db_xref="CDD:143501" misc_feature complement(order(888675..888677,888759..888761, 888960..888971,889080..889085,889191..889193, 889200..889202,889206..889208,889350..889352, 889491..889493,889560..889562,889617..889619, 889623..889625)) /locus_tag="Alide_0836" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(888651..888653,888663..888665, 888675..888677,888756..888761,888840..888842, 888852..888854,888960..888962,889191..889193, 889200..889202,889617..889619)) /locus_tag="Alide_0836" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(888759..888761,889617..889619)) /locus_tag="Alide_0836" /note="catalytic residues [active]" /db_xref="CDD:143501" misc_feature complement(order(888636..888638,888645..888656, 888660..888668,888747..888749,888753..888770, 888882..888884,888888..888890,888909..888911, 888915..888917,889281..889292,889413..889415, 889422..889424,889467..889469,889479..889487, 889542..889547,889551..889556,889599..889604)) /locus_tag="Alide_0836" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143501" gene complement(889817..890029) /locus_tag="Alide_0837" /db_xref="GeneID:10102866" CDS complement(889817..890029) /locus_tag="Alide_0837" /inference="similar to AA sequence:KEGG:Ajs_0717" /note="manually curated; KEGG: ajs:Ajs_0717 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125490.1" /db_xref="GI:319761553" /db_xref="GeneID:10102866" /translation="MLRARQILVRTIALALSAAALGCGQRGPLYLPTEPAAAQRATLP ETLNPAASRATAPAAPSSVPASSSLP" sig_peptide complement(889961..890029) /locus_tag="Alide_0837" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.950 at residue 23" gene 890042..890371 /locus_tag="Alide_0838" /db_xref="GeneID:10102867" CDS 890042..890371 /locus_tag="Alide_0838" /inference="protein motif:TFAM:TIGR03421" /note="KEGG: ajs:Ajs_0728 frataxin family protein; TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein" /codon_start=1 /transl_table=11 /product="iron donor protein cyay" /protein_id="YP_004125491.1" /db_xref="GI:319761554" /db_xref="InterPro:IPR002908" /db_xref="InterPro:IPR020895" /db_xref="GeneID:10102867" /translation="MTDLEFMDRAEQLLLAVEQGCDRINEETDADLDSQRTGGMVTIS FRNRSQIVINLQKPLHEVWMAAQSGGYHYRFDGARWMDTKGDGEFFAALSRDASRQAG QELRFTA" misc_feature 890042..890362 /locus_tag="Alide_0838" /note="Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in...; Region: Frataxin; cl00238" /db_xref="CDD:193727" misc_feature order(890048..890050,890072..890077,890084..890086, 890096..890098,890105..890110,890126..890128, 890132..890134) /locus_tag="Alide_0838" /note="putative iron binding site [ion binding]; other site" /db_xref="CDD:29607" gene complement(890378..892693) /locus_tag="Alide_0839" /db_xref="GeneID:10102868" CDS complement(890378..892693) /locus_tag="Alide_0839" /inference="protein motif:TFAM:TIGR02074" /note="KEGG: dia:Dtpsy_0698 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase" /codon_start=1 /transl_table=11 /product="penicillin-binding protein, 1a family" /protein_id="YP_004125492.1" /db_xref="GI:319761555" /db_xref="GO:0008233" /db_xref="InterPro:IPR001264" /db_xref="InterPro:IPR001460" /db_xref="InterPro:IPR011816" /db_xref="GeneID:10102868" /translation="MRWLLRGLAWLVGLGVAGALAGVLVVGVGLAMAYPNLPDVSDLA DYRPKLPLRVYSSEGALLGEFGEERRNLTPIEDIPAVMTNAVLAIEDARFFQHGGVDY KGVLRAALANLGRVKSQGASTITMQVARNVYLSSEKTLTRKIYEILLTFKLEHLLSKN QILEIYMNQIYLGNRAYGFAAASEAYFGKPLKSISIAEAAMLAGLPKAPSAYNPISNP KRARIRQLYIIDRMLENGFITAEQAAAAKQEDLKLRSSTNSTRVHAEYVAEMARQLVF SQYGAEAYTRGLNVYTTLNAGEQEAAYAALRKGIMDYERRQHYRGPERFVNLPASPAE AEDAIDDVLASHPDNGDVLAAVVLEASSKKIVAARADGEQIEITGEGLKPAQSGLSDK APPNIKLRRGAVIRVVQTPKKTWEITQLPEVEGAFVAMDPRTGAIHALVGGFDFDKNK FNHATQAWRQPGSAFKPFIYSAALEKGFTPATVVNDAPLFFSAGATGAQPWEPKNYDG KYDGPMTLRTGLARSKNVVSIRVLQAVGPKTAQDWVTRFGFDADKHPAYLTMALGAGS VTPMQMATAYSVFANGGYRVNPYLVTRVTDHKGRVLSNVQPPATTDNPRAIDARNAFV MDSLLQEVTRSGTAARAQATLKRPDLYGKTGTTNDAVDAWFAGFQPSLVAVTWVGYDT PRNLGSRETGGGLALPIWISFMDKALKGVPVAEPTVPPGVVNVSGEWFYEEYARNAGV ASVGMDAPAPAAPAVAPAPEERSRILDLFRN" sig_peptide complement(892592..892693) /locus_tag="Alide_0839" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.675) with cleavage site probability 0.583 at residue 34" misc_feature complement(890519..892591) /locus_tag="Alide_0839" /note="penicillin-binding protein 1a; Provisional; Region: mrcA; PRK11636" /db_xref="CDD:183248" misc_feature complement(891995..892522) /locus_tag="Alide_0839" /note="Transglycosylase; Region: Transgly; cl07896" /db_xref="CDD:195645" misc_feature complement(890579..891421) /locus_tag="Alide_0839" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene 893020..894090 /locus_tag="Alide_0840" /db_xref="GeneID:10102869" CDS 893020..894090 /locus_tag="Alide_0840" /inference="protein motif:TFAM:TIGR01175" /note="TIGRFAM: type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM" /codon_start=1 /transl_table=11 /product="type iv pilus assembly protein pilm" /protein_id="YP_004125493.1" /db_xref="GI:319761556" /db_xref="InterPro:IPR005883" /db_xref="GeneID:10102869" /translation="MGSLFSRQSAPLLGVDISSSSVKLVELGRDKGGTLVLECCAIEP LERGWITDGNIEKFDEVAEALRRLVRKSGTRTKNVALALPPSAVITKRISLPGGMTEQ ELEVQVESEANQYIPFSLDEVSLDFCVVGPSKNAPGDVDVLIAASRKEKVQDRQGLAE AAGLKPVIVDIESHAARLAAGRLIEALPNRGVDSVVALFEVGALTTSMQVIRNDDVLY ERDQAFGGAQLTQLIVRQYGFSQEEAEGKKRNGDLPEDYQSAVLQPFVDSLAQEIGRA LQFFFTSTPYNRVDHIMLAGGSAPLFGLTQTVTQNTGFACSVINPFEGMEVGSAVRLK RMAREAPSYLTSCGLAMRRFLQ" misc_feature 893059..894081 /locus_tag="Alide_0840" /note="Competence protein A; Region: Competence_A; pfam11104" /db_xref="CDD:192707" misc_feature 893200..>893568 /locus_tag="Alide_0840" /note="GspL cytoplasmic actin-ATPase-like region; Region: GspL; pfam05134" /db_xref="CDD:191202" gene 894087..894698 /locus_tag="Alide_0841" /db_xref="GeneID:10102870" CDS 894087..894698 /locus_tag="Alide_0841" /inference="protein motif:PFAM:PF05137" /note="PFAM: Fimbrial assembly family protein; KEGG: ajs:Ajs_0731 fimbrial assembly family protein" /codon_start=1 /transl_table=11 /product="fimbrial assembly family protein" /protein_id="YP_004125494.1" /db_xref="GI:319761557" /db_xref="InterPro:IPR007813" /db_xref="GeneID:10102870" /translation="MILINLLPHREAARKRRRETFQAIMLASALAGLAIAAAIYWWFQ VMITDQQDKNNFLRGEIQVLEQQIKEIATIEEEITALQARQKAVEDLQSDRNLPVHLL SELVQQLPDGVYVTSLKQVDQVVTMQGMAQSNERVSEMLRNLTNNTPWFSKPELVEIV AANVALTPKDQRRIASFNLRFRLMRSSEAQKAMDAASDAAAGK" misc_feature 894087..894599 /locus_tag="Alide_0841" /note="Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilN; COG3166" /db_xref="CDD:32979" sig_peptide 894087..894197 /locus_tag="Alide_0841" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.967) with cleavage site probability 0.801 at residue 37" misc_feature 894384..894635 /locus_tag="Alide_0841" /note="Fimbrial assembly protein (PilN); Region: PilN; pfam05137" /db_xref="CDD:191205" gene 894695..895378 /locus_tag="Alide_0842" /db_xref="GeneID:10102871" CDS 894695..895378 /locus_tag="Alide_0842" /inference="similar to AA sequence:KEGG:Ajs_0732" /note="KEGG: ajs:Ajs_0732 pilus assembly protein, PilO" /codon_start=1 /transl_table=11 /product="pilus assembly protein, pilo" /protein_id="YP_004125495.1" /db_xref="GI:319761558" /db_xref="InterPro:IPR007445" /db_xref="GeneID:10102871" /translation="MSMAKKKAPKFDFAKLQGDLQRQFQNLDPKDPSLWPVLPRTLLC LLIAAGMATFLWFFKLSEFQDELTAERSTEQTLRDDYQKKLVKAVSLDALKKQREQIQ QYVIQLEKQLPSKAEMSALLSDINQAGLGRSLQFELFRPGQVVVRDYYAELPISIRVV GKYHDVGAFASDVANLSRIVTLNNLSIAPATKDAGSNLTMEATARTFRYLDAEEIQAQ KAAAKGAKK" misc_feature 894893..895327 /locus_tag="Alide_0842" /note="Pilus assembly protein, PilO; Region: PilO; cl01234" /db_xref="CDD:154281" gene 895375..895932 /locus_tag="Alide_0843" /db_xref="GeneID:10102872" CDS 895375..895932 /locus_tag="Alide_0843" /inference="protein motif:PFAM:PF04351" /note="PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP" /codon_start=1 /transl_table=11 /product="pilus assembly protein pilp" /protein_id="YP_004125496.1" /db_xref="GI:319761559" /db_xref="InterPro:IPR007446" /db_xref="GeneID:10102872" /translation="MMRFRCRQLIVLAGVLILSGCGGSDEDELRQWMAELRATTKPRV TPLKEPKQFLPQDYFGDKGMDPFSPMKLTQALRRESSETVANASLIAPEMARRKEPLE AYPLDTVKMVGSLNKTGVPTALVSVDKLLYQVRTGNYLGQNYGKIVSISETNMRLREI VQDSTGDWVERMTTLDLQEGNEVRK" sig_peptide 895375..895449 /locus_tag="Alide_0843" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.713) with cleavage site probability 0.341 at residue 25" misc_feature 895456..895908 /locus_tag="Alide_0843" /note="Pilus assembly protein, PilP; Region: PilP; cl01235" /db_xref="CDD:154282" gene 895929..898070 /locus_tag="Alide_0844" /db_xref="GeneID:10102873" CDS 895929..898070 /locus_tag="Alide_0844" /inference="protein motif:TFAM:TIGR02515" /note="KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain" /codon_start=1 /transl_table=11 /product="type iv pilus secretin pilq" /protein_id="YP_004125497.1" /db_xref="GI:319761560" /db_xref="InterPro:IPR001775" /db_xref="InterPro:IPR004845" /db_xref="InterPro:IPR004846" /db_xref="InterPro:IPR005644" /db_xref="InterPro:IPR011662" /db_xref="InterPro:IPR013355" /db_xref="GeneID:10102873" /translation="MMRQKTRLRRHLWAVGVAILTALGGTAAHAGGTIESVTGFLQGG AEVLRIEFSEPQTDLPTGFSIQSPARIALDFPGVGNTSGRSLVEINQGNVRSANIVQA GERSRVVLNLKQPTSYRAELHGKTVMVLLDPVTGGARVPSASPTAFAESQNTDVLALK DLDFRRGTDGAGRIVVGLPSSQVGVDLQLQGKGLVVDFLRSSLPEGLRRRLDVSDFGT PVQTITATQQGERVRLAIESVGEWEHSAYQSDNQFVVEIRPKKVDLSKLTQGPNYTGE KLSLNFQNIEVRSLLQVIADFTNFNIVTSDTVTGALTLRLKDVPWDQALQIIMDAKGL GMRKSGTVLWIAPKDEIDERTKKDYEAALAIQKLEPLRTQAYQLNYAKAADMVIQLTT SASSGGGSGSATRFLSERGSAIAEPRTNQLFVTDTPAKLEEVRKLLLTLDVPVRQVMI EARIVEARDTFGRSLGVRLGGGDLRANRGGDGGYSIGGGNRAAWGTNYSNATNSAGFG DAVNVGGNFVNLPASLSNVTGVGSFALSIFNSAANRFLTLELSAMEADGQGKVVSSPR LITADQTKALIEQGTEYPYSVTAPNGATTIAFKKAVLKLEVVPQITPEGNIILDLDVN KDSRGESTTQGVAIDTKHIKTQVLVENGGTVVIGGIFELEETNQENKIPLLGDVPVMG NLFKSRTKESSKREMLVFITPKVITDRGPVR" sig_peptide 895929..896021 /locus_tag="Alide_0844" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.996 at residue 31" misc_feature 896751..898046 /locus_tag="Alide_0844" /note="type IV pilus secretin (or competence protein) PilQ; Region: IV_pilus_PilQ; TIGR02515" /db_xref="CDD:162898" misc_feature 897045..897269 /locus_tag="Alide_0844" /note="Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958" /db_xref="CDD:146539" misc_feature 897582..898046 /locus_tag="Alide_0844" /note="Bacterial type II and III secretion system protein; Region: Secretin; cl02829" /db_xref="CDD:164025" gene 898092..899639 /locus_tag="Alide_0845" /db_xref="GeneID:10102874" CDS 898092..899639 /locus_tag="Alide_0845" /inference="protein motif:PFAM:PF05345" /note="PFAM: Ig family protein; KEGG: eba:ebA2288 hypothetical protein" /codon_start=1 /transl_table=11 /product="ig family protein" /protein_id="YP_004125498.1" /db_xref="GI:319761561" /db_xref="InterPro:IPR008009" /db_xref="GeneID:10102874" /translation="MRISKTIITSAVFAAVLSACGGGGGSGGESHSTYSITLRADKTQ LPLNVSSYPVGQGVYAPFSSTLYVEAQEGGRPIPGGEKIFGCNMAGGLDSGSLYYLDG DPEHEEEVDDGNGGKIKVPKAYRSITLSSNSGGNSFHFHAKNQAGTARIVCTVTDPRD KKEHSASVDITVGGTTGKPASVKMLVPSQQSYMGTQGNATRIPSTVVMQAFVQDDAIQ PVSSSSGANVQVRILPGTDAAVGARLVAGVLSGGVLQLPSIGGVAQFSLVSGAETGPI FLEFTADRYDNNVGNGIQDPITIIDQISVIEAQTDALAVSDEDLGQVTNTISYTHLLT AQGGLPPYTWSATGLPKGLSVDSGTGVLSGTPDDVERVYQATVTVRDKNKLADSGAIK LTLIGAVTPEDFAIGNCNLNQVCPLGNVPGGQNFAYAFTASVPGVTWSFAGLPSWLTS GTTGVTGFISGTPKACTNSVPAVPPAPATPADPGDTGTYTFFVTATKGVTNVTRQVSL TVTGSCS" sig_peptide 898092..898175 /locus_tag="Alide_0845" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.686) with cleavage site probability 0.268 at residue 28" misc_feature 899118..899240 /locus_tag="Alide_0845" /note="Putative Ig domain; Region: He_PIG; cl09256" /db_xref="CDD:158466" gene 899763..900881 /locus_tag="Alide_0846" /db_xref="GeneID:10102875" CDS 899763..900881 /locus_tag="Alide_0846" /EC_number="4.2.3.4" /inference="protein motif:TFAM:TIGR01357" /note="TIGRFAM: 3-dehydroquinate synthase; KEGG: dia:Dtpsy_0704 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase" /codon_start=1 /transl_table=11 /product="3-dehydroquinate synthase" /protein_id="YP_004125499.1" /db_xref="GI:319761562" /db_xref="GO:0003856" /db_xref="InterPro:IPR002658" /db_xref="InterPro:IPR016037" /db_xref="InterPro:IPR016303" /db_xref="GeneID:10102875" /translation="MKQSTPPIEGVRIVLGDRSYDIDIGSALLAGLAAHKALPSGTAA LIVTNDTVQPLYEKALVEALAGRYPVVHTVALPDGEEHKNWQTLNLIFDALLTHGCDR KVVLYALGGGVIGDMTGFAAACYMRGVPFVQVPTTLLAQVDSSVGGKTAINHPLGKNM IGAFYQPRLVVCDLATLDTLPARELAAGLAEVIKYGPIADMELFGWLEEHMDALLARE RQALAHAVRRSCEIKAAVVGADEREAGLRAILNFGHTFGHAIEAGMGYGVWLHGEGVA AGMVMAAELSRRLGLVDEAFTQRLTRLIARAGLPTRGPVLDAQDNAGRYLELMRVDKK AEGGEIRFVLIDGPGKAIMRAAPDALVREVIAQCCAAA" misc_feature 899817..900857 /locus_tag="Alide_0846" /note="Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis; Region: DHQS; cd08195" /db_xref="CDD:173954" misc_feature order(899907..899909,900093..900101,900108..900110, 900117..900119,900168..900173,900177..900179, 900234..900236,900243..900245,900288..900290, 900312..900314,900333..900335,900345..900347, 900522..900524,900534..900536,900573..900575) /locus_tag="Alide_0846" /note="active site" /db_xref="CDD:173954" misc_feature order(900015..900017,900036..900041,900120..900122, 900129..900131,900135..900143,900207..900212, 900237..900254) /locus_tag="Alide_0846" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173954" misc_feature order(900333..900335,900522..900524,900573..900575) /locus_tag="Alide_0846" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173954" gene 900939..902111 /locus_tag="Alide_0847" /db_xref="GeneID:10102876" CDS 900939..902111 /locus_tag="Alide_0847" /inference="protein motif:TFAM:TIGR01353" /note="TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ajs:Ajs_0736 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="deoxyguanosinetriphosphate triphosphohydrolase" /protein_id="YP_004125500.1" /db_xref="GI:319761563" /db_xref="GO:0000287" /db_xref="GO:0008832" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006261" /db_xref="InterPro:IPR006674" /db_xref="GeneID:10102876" /translation="MLDSALAPHACHPGRSRGRRHPEPPAPTRTEYQRDRDRIVHSTA FRRLVYKTQVFLNHEGDLFRTRLTHSLEVAQLGRSIARSLRLNEDLVEAVCLAHDLGH TPFGHAGQDVLNECMQDFGGFEHNLQSLRVVDRLEERYPQYDGINLTFETREGILKHC SRRNAELLEAREPGGVGRRFLLGRQPSLEAQLCNLADEIAYNAHDIDDGVRSGLITLA QLRDVPLFDRYRARAEAEYPHLAAPAGQRRLLAEAIRRMLSDQVYDVIDATRAALAAH APADVDAVRGLPALVGFSPDMRAQSQVLKRFLFRELYRHPQVVQTTDRARQVVRELFS IYQAGPREMPTAQAASALEGDAQQRARTVADFIAGMTDRFAAREHERLTGRRLLGR" misc_feature 900954..902096 /locus_tag="Alide_0847" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature 900981..902093 /locus_tag="Alide_0847" /note="deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional; Region: PRK01096" /db_xref="CDD:179219" gene 902143..902763 /locus_tag="Alide_0848" /db_xref="GeneID:10102877" CDS 902143..902763 /locus_tag="Alide_0848" /inference="protein motif:PFAM:PF07209" /note="PFAM: protein of unknown function DUF1415; KEGG: dia:Dtpsy_0706 protein of unknown function DUF1415" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125501.1" /db_xref="GI:319761564" /db_xref="InterPro:IPR009858" /db_xref="GeneID:10102877" /translation="MTTAPTPDQPSPSACDDTVVVQDTVRWLERAVIGLNLCPFAKSV HTKGQIHYVVSHATDARALLEDLQRELEALAEAPPDKRDTTLLMAPLAMPDFLDFNDF LELADELVEAMDLAGILQVASFHPRFQFEGTLADDVSNCTNRAPYPTLHLLREESIDR AVEAFPEAEEIFERNIEVLERLGAEGWKALDVGPRCPVDHGRKGGA" misc_feature 902200..902712 /locus_tag="Alide_0848" /note="Protein of unknown function (DUF1415); Region: DUF1415; cl01301" /db_xref="CDD:154322" gene 902760..903632 /locus_tag="Alide_0849" /db_xref="GeneID:10102878" CDS 902760..903632 /locus_tag="Alide_0849" /inference="similar to AA sequence:KEGG:Dtpsy_0707" /note="KEGG: dia:Dtpsy_0707 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125502.1" /db_xref="GI:319761565" /db_xref="GeneID:10102878" /translation="MSRAPSRADAAQAAVLAELRPGQSVELLKELHILTREGRLNQDS RRKLKQVYHLYQFIEPLLQELAQDGHAPLLADHGAGKSYLGFILYDLFFKPLGRGEIY GIEWRAELVQRSRELAARLGFGRMRFLDMSVADAAETADLPERFDIVTALHACDTATD DAIAFGLRKHARFMVLVPCCQAEVAACLRQTKALSLSRTPLAELWRHPIHTRELGSQI TNVLRCLHLEASGYQVTVTELVGWEHSLKNELILARYTGQKKRSASERLAAILEEFGL AQALAGRFGLDQKE" misc_feature 902991..903284 /locus_tag="Alide_0849" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(903748..905253) /locus_tag="Alide_0850" /db_xref="GeneID:10102879" CDS complement(903748..905253) /locus_tag="Alide_0850" /inference="protein motif:TFAM:TIGR01722" /note="KEGG: hse:Hsero_3067 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase" /codon_start=1 /transl_table=11 /product="methylmalonate-semialdehyde dehydrogenase" /protein_id="YP_004125503.1" /db_xref="GI:319761566" /db_xref="GO:0004491" /db_xref="InterPro:IPR010061" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR016160" /db_xref="GeneID:10102879" /translation="MTQPTTLHHFIGGKPYPSKSAEWRDVTNPATQEVVARVPFATRE EVELAVANAQEAFQTWRETSLSARMRIMLKLQHLIREHQAEIAQLITREHGKTLPDAE GEVGRGLEVVEHACSITTLQLGEIAENAATGVDVYNLLQPLGVGAGITAFNFPVMLPC FMFPMAIACGNTFVLKPSEQDPSSTMRLVELAHEAGVPPGVLNVIHGGPEVADMLCDH PDIKALSFIGSTHVGTHIYRRASEAGKRVQSMMGAKNHCVVMPDAPKEHALNNLLGSA FGAAGQRCMANSVAVFVGAARDWLPELVAKSKAMKVGPGTDRSADLGPLVNPRAKQRV LGLIDSGVAQGAKLLLDGRACTVPGYEQGNFVGPTVFADVTDQMDIYQQEIFGPVLNV VCVDTLEDAIAFINRNPNGNGTSIFTSSGWAARKFQHDINVGQVGINVPIPVPVAYFS FTGSRASKLGDLGPNGKQAVQFWTQTKTVTARWYEDHGSSSDAVNTTITMK" misc_feature complement(903805..905235) /locus_tag="Alide_0850" /note="Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085" /db_xref="CDD:143404" misc_feature complement(903817..905181) /locus_tag="Alide_0850" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(order(903805..903810,903814..903831, 903850..903852,903892..903894,903898..903900, 903910..903912,903937..903948,903952..903954, 903958..903963,903970..903972,903979..903984, 903988..903993,903997..903999,904516..904518, 904522..904524,904531..904533,904540..904542, 904552..904554,904831..904833,904840..904842, 904849..904851,904864..904887,904912..904917, 904924..904926,905023..905025,905035..905037, 905044..905046,905056..905058,905062..905064)) /locus_tag="Alide_0850" /note="tetrameric interface [polypeptide binding]; other site" /db_xref="CDD:143404" misc_feature complement(order(904018..904020,904096..904098, 904102..904104,904402..904404,904498..904506, 904558..904560,904567..904578,904627..904629, 904717..904719,904726..904728,904771..904773, 904795..904806)) /locus_tag="Alide_0850" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143404" misc_feature complement(order(904402..904404,904411..904413, 904504..904506,904795..904797)) /locus_tag="Alide_0850" /note="catalytic residues [active]" /db_xref="CDD:143404" gene complement(905268..906485) /locus_tag="Alide_0851" /db_xref="GeneID:10102880" CDS complement(905268..906485) /locus_tag="Alide_0851" /inference="similar to AA sequence:KEGG:Hsero_3068" /note="KEGG: hse:Hsero_3068 branched-chain amino acid ABC transporter periplasmic protein" /codon_start=1 /transl_table=11 /product="branched-chain amino acid abc transporter periplasmic protein" /protein_id="YP_004125504.1" /db_xref="GI:319761567" /db_xref="GeneID:10102880" /translation="MRPMRHSLALAALALCAGAQAQISDDVVKIGVLTDMAGPYSGMG GAGSVVAAKMAIDDCLKAECKGMKIEVVSADHQNKADIAATKAREWLDRDKVDALADL TNSAGALAVQKLIKEKGGIAMYSGPATTRLTDEDCAENGFHWMFDTYSSASGAAAALT RNGDKSWFFVTVDYAFGHSLEKDASDMVKANGGTVLGSVRHPLNASDFSSFILQAQNS KAQVIGLANGAQDTVNAIKAAREFGIGTGKSGQKVASLLMFLTDVHSLGLKQAQGLMF SEGFYWDMDDKTRAFSTRFEKLHKGFKPTMVQAGVYSSVRHYLKSVAAAKTDDWKTVA QKMRELPIDDPVMRNASIRPDGRVIHDMYLFQVKAPGESKGPWDYYKTVSTIPAQIAF KPLAQSACPLVKK" sig_peptide complement(906420..906485) /locus_tag="Alide_0851" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 22" misc_feature complement(905343..906422) /locus_tag="Alide_0851" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(905391..906401) /locus_tag="Alide_0851" /note="Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family; Region: PBP1_SBP_like_1; cd06327" /db_xref="CDD:107322" misc_feature complement(order(905715..905717,905802..905804, 905958..905960,906102..906110,906171..906179)) /locus_tag="Alide_0851" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107322" gene 906619..907545 /locus_tag="Alide_0852" /db_xref="GeneID:10102881" CDS 906619..907545 /locus_tag="Alide_0852" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hse:Hsero_3069 LysR family transcription regulator protein" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125505.1" /db_xref="GI:319761568" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102881" /translation="MAIDRINWDNLRLFLAVVRAQSAQEAARRMEVDHSTITRRLHRL EKELGAQLFERTPAGHLLTPAGQRLLEHVERMESSMVLVGEDIGGDSHMLTGHVRLGA TEGFGSFFLAPHLSYFCDRHPGIQVELLIVPRFINLSQREADLAVNIERPQRSGQVCS KLTDYRLRLYASRSYLQGQPPIRRLRDLAAHRFFGYVEELVFSQELRYLTSIMPDAPM SLRSTSVVAQYNAVREGRGLAVLPCFMAAQCAELEPVLPHEVDVLRTFWLAAPADRRE LARVRALWDYLRELVECNQPFLLGDAPVWQRV" misc_feature 906634..907494 /locus_tag="Alide_0852" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 906640..906819 /locus_tag="Alide_0852" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 906904..907479 /locus_tag="Alide_0852" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(906952..906957,906961..906966,906973..906975, 906985..906987,906991..907011,907267..907269, 907276..907290,907306..907311,907315..907320) /locus_tag="Alide_0852" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 907612..908322 /locus_tag="Alide_0853" /db_xref="GeneID:10102882" CDS 907612..908322 /locus_tag="Alide_0853" /inference="similar to AA sequence:KEGG:Vapar_1151" /note="KEGG: vap:Vapar_1151 protein of unknown function DUF1568" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125506.1" /db_xref="GI:319761569" /db_xref="GeneID:10102882" /translation="MARLPRLTLAGYPHHVIQRGNNRQAIFVDRQDFETMLALLAESA QKFRVAVHAYVLMDNHFHLLATPATADTLPQMMQAVGRSYVRYFNDRHGRSGTLWEGR YRSTLIETERYLLACMAYIDLNPVRAGMVAQPLAWPWSSHAHYLGQRSDKLVTPHTLY WALGNTPFAREAAYAELVQAGIAGAEQAALTDATLRGWALGGADFVAELQKKSPRRVT KARPGRPAAAAEDTTKLD" misc_feature 907612..908031 /locus_tag="Alide_0853" /note="Transposase IS200 like; Region: Y1_Tnp; cl00848" /db_xref="CDD:154036" gene 908492..913225 /locus_tag="Alide_0854" /db_xref="GeneID:10102883" CDS 908492..913225 /locus_tag="Alide_0854" /EC_number="1.4.7.1" /inference="protein motif:PRIAM:1.4.7.1" /note="KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein" /codon_start=1 /transl_table=11 /product="glutamate synthase (ferredoxin)" /protein_id="YP_004125507.1" /db_xref="GI:319761570" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR002489" /db_xref="InterPro:IPR002932" /db_xref="InterPro:IPR006982" /db_xref="InterPro:IPR017932" /db_xref="GeneID:10102883" /translation="MTKAAEIQHLQQHGLYASSNEHDACGLGFVAHIKGVKRHDIVTG ALKILENLDHRGAVGADKLMGDGAGILIQIPDQLYREEMAGQGVELPPAGEYGVGMVF LPKEHASRLACEQELERAIKAEGQVLLGWRDVPVNRDMPMSPTVREKEPILRQVFIGR GADVIVQDALERKLYVIRKTASAAIQSLGLKHSKEYYVPSMSSRTVVYKGLLLAAQVG EYYLDLADERCVSAIGLVHQRFSTNTFPEWPLAHPYRYVAHNGEINTVRGNYNWMLAR EGVMASPVLGEDLKKLYPISFAGQSDTATFDNCLELLTMAGYPISQAVMMMIPEPWEQ HESMDERRRAFYEYHAAMIEPWDGPASIVFTDGRQIGATLDRNGLRPSRYVVTDDDLV ILASEAGVLPVPDSRVLRKWRLQPGKMLLIDLEQGRLIEDDELKANIVNTKPYKQWIE NLRIKLDSVQVPAGLQSPAPSALPLLDRQQAFGFTQEDIKFLLAPMAANGEEGIGSMG NDSPLAVLSERSKPLYNYFRQMFAQVTNPPIDPIREAIVMSLVSFVGPKPNLLDINQV NPPMRLELHQPILDFEGMAKLRQIEQFTHGKFKSATIDITYPLAWGKQGVEAKLASLC AQAVDEIKGGANILIISDRNLGATQVAIPALLALSAIHQHLVREGLRTTTGLVVETGT AREVHHFAVLAGYGAEAVHPYLALETLVDMHQDLPGALSADKAIYNYIKAVGKGLSKI MSKMGVSTYMSYCGAQLFECVGLNSDTVAKYFTGTASRVEGIGVFEIAEEAIRTHVAA FGDDPVLETMLETGGEYAWRARGEEHMWTPDAIAKLQHATRGGNFSTYKEYAQIINDQ SRRHMTLRGLFEFKFDPAKAIPIDEVEPAKEIVKRFATGAMSLGSISTEAHATLAVAM NRIGGKSNTGEGGEDPARYRKELKGIPIVQGETLASVIGADKVAADIALQDGDSLRSR IKQVASGRFGVTAEYLSSSDQIQIKMAQGAKPGEGGQLPGGKVSEYIGQLRYSVPGVG LISPPPHHDIYSIEDLAQLIHDLKNVAPHAGISVKLVSEVGVGTIAAGVAKCKSDHVV IAGHDGGTGASPWSSIKHAGSPWEIGLAETQQTLVLNRLRGRIRVQADGQMKTGRDVV IGALLGADEFGFATAPLVVEGCIMMRKCHLNTCPVGVATQDPVLRAKFSGKPEHVVNY FFFVAEEARQIMAQLGVRTFDELIGRTDLLDTRKGLAHWKAQGLDFSRLFAQPQAPSD VARHHVEAQEHGLEKALDVKLIERCQPAIQHGENVRLMEVARNVNRSVGAMLSGAVTK AHPEGLPDDTIRIHFEGTGGQSFGAFLCKGITLNLTGEANDYTGKGLSGGRIIVRPSH EFRGESTANTIVGNTVMFGATSGEAFFAGVAGERFAVRLSGATAVVEGVGDHGCEYMT GGTVVVLGRTGRNFAAGMSGGVAYVYDEDGRFDGRCNLSMVALERILPADEQVASVDP GHWHRGQTDEEQLKKLLEAHSRYTGSRRARDLLDNWAAARSRFVKVFPTEYKRALVEM YERKVLEEQATPAQAASKNEAVAAK" misc_feature 908528..913117 /locus_tag="Alide_0854" /note="glutamate synthase subunit alpha; Provisional; Region: gltB; PRK11750" /db_xref="CDD:183297" misc_feature 908564..909820 /locus_tag="Alide_0854" /note="Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-...; Region: GltS; cd00713" /db_xref="CDD:48477" misc_feature order(908564..908566,908654..908656,909206..909208, 909269..909277,909395..909397) /locus_tag="Alide_0854" /note="active site" /db_xref="CDD:48477" misc_feature order(908822..908824,908831..908833,908843..908845, 908882..908884,908888..908890,908903..908905, 908939..908941,908951..908953,909224..909226) /locus_tag="Alide_0854" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48477" misc_feature 909923..910786 /locus_tag="Alide_0854" /note="Glutamate synthase central domain; Region: Glu_syn_central; pfam04898" /db_xref="CDD:147192" misc_feature 910973..912193 /locus_tag="Alide_0854" /note="Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant...; Region: GltS_FMN; cd02808" /db_xref="CDD:73370" misc_feature order(911174..911185,911264..911266,911414..911416, 911480..911482,911498..911500,911558..911560, 911684..911686,911774..911782,911897..911899, 911903..911905,911966..911971,911993..911995, 912011..912013,912026..912028) /locus_tag="Alide_0854" /note="active site" /db_xref="CDD:73370" misc_feature order(911174..911185,911264..911266,911414..911416, 911480..911482,911684..911686,911774..911779, 911897..911899,911903..911905,911966..911971) /locus_tag="Alide_0854" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature order(911498..911500,911558..911560,911777..911782) /locus_tag="Alide_0854" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature order(911993..911995,912011..912013,912026..912028) /locus_tag="Alide_0854" /note="3Fe-4S cluster binding site [ion binding]; other site" /db_xref="CDD:73370" misc_feature 912326..913120 /locus_tag="Alide_0854" /note="gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the...; Region: gltB_C; cd00982" /db_xref="CDD:29611" misc_feature order(912425..912430,912437..912439,912446..912451, 912503..912505,912512..912517,912527..912529, 912563..912571,912584..912586,912593..912595, 912650..912661,912668..912670,912677..912679, 912686..912688,912713..912727,912734..912739, 912743..912745,912770..912781,912788..912793, 912797..912799,912836..912838,912845..912847, 912854..912856,912899..912910) /locus_tag="Alide_0854" /note="domain interface; other site" /db_xref="CDD:29611" gene 913266..914744 /locus_tag="Alide_0855" /db_xref="GeneID:10102884" CDS 913266..914744 /locus_tag="Alide_0855" /inference="protein motif:TFAM:TIGR01317" /note="KEGG: dia:Dtpsy_0710 glutamate synthase subunit beta; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="glutamate synthase, NADH/nadph, small subunit" /protein_id="YP_004125508.1" /db_xref="GI:319761571" /db_xref="GO:0004491" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR006005" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR017896" /db_xref="GeneID:10102884" /translation="MGKTTGFLEYERIEEGYPAPAERVKHYKEFVIGLSSEQAKIQAA RCMDCGTPFCNNGCPVNNIIPDFNDLVYHQDWRSASTVLHSTNNFPEFTGRICPAPCE AACTLNINSDAVGIKSIEHAIVDRAWAEGWVQPQLPRHKTGRKVAIVGAGPAGLAAAQ QLARAGHDVTLFEKNDRVGGLLRYGIPDFKLDKGHIDKRVRQLVAEGVQIRTGVFVGS EKDGLGQGSKVTNWSTETVTPAQLQAEFDAVLLTGGAEQSRDLPVPGRDLAGIHFAME FLPQQNKVNAGDKLKGQIRADGKHVIVIGGGDTGSDCVGTSNRHGAKSVTQFEVMPMP PEQENKPLVWPYWPLKLRTSSSHDEGCVREFAISTKEFTGHKGKVTGLKTVQVEFKDG RFSEVPGTEKEYPADLVLLAMGFVSPVAAVLDAFGVDKDARGNARASTDFIGGYATSV PKVFAAGDMRRGQSLVVWAIREGRQAARAVDEFLMGASDLPR" misc_feature 913266..914738 /locus_tag="Alide_0855" /note="glutamate synthase subunit beta; Reviewed; Region: gltD; PRK12810" /db_xref="CDD:183763" misc_feature 913698..>913883 /locus_tag="Alide_0855" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 914949..915746 /locus_tag="Alide_0856" /db_xref="GeneID:10102885" CDS 914949..915746 /locus_tag="Alide_0856" /inference="protein motif:PFAM:PF00497" /note="KEGG: ajs:Ajs_0743 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_004125509.1" /db_xref="GI:319761572" /db_xref="GO:0005215" /db_xref="InterPro:IPR001320" /db_xref="InterPro:IPR001638" /db_xref="InterPro:IPR018313" /db_xref="GeneID:10102885" /translation="MKKIAAVALLSLGAVLAGCSKQENAPAPAAAPAPAAVTQIVVGL DDNFPPMGFRDEKNELVGFDIDMAKEAAKRLGLQVEFKPIDWSAKEAELSGKRVDVLW NGLTITEERKQNIAFTAPYMENHQIIVVPAGSAIKAKADLAGKVVGAQEGSSAVDAIK KEDAVFKSFKEFKTFGDNVTALMDLSTGRLEAVVVDEVVGRYYVAKKPDQYEVLDDNF GTEEYGVGLRKDDTELHGKLDKALADMKADGAAAKIAEQWFGKNIIK" sig_peptide 914949..915017 /locus_tag="Alide_0856" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.465 at residue 23" misc_feature 915066..915731 /locus_tag="Alide_0856" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature 915066..915650 /locus_tag="Alide_0856" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(915090..915092,915204..915206,915279..915281, 915408..915410,915534..915536) /locus_tag="Alide_0856" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(915483..915485,915495..915497,915513..915515) /locus_tag="Alide_0856" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 915603..915620 /locus_tag="Alide_0856" /note="hinge residues; other site" /db_xref="CDD:29040" gene 915808..916464 /locus_tag="Alide_0857" /db_xref="GeneID:10102886" CDS 915808..916464 /locus_tag="Alide_0857" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: ajs:Ajs_0744 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004125510.1" /db_xref="GI:319761573" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10102886" /translation="MMDYVLSLLGPLAQGATVTLKLFVITLALAVPLGLVLALARLSR WKALSGAVNGYIWLMRGTPLMLQMLFIYFALPFVPVVGVRLPDFPAAVTAFALNYAAY FAEIFRAGIQSVDRGQYEAAKVLGMSYGQTMRRIVLPQMVRSILPPMSNETITLVKDT SLIYVLALNDLLRAARGIVQRDFTTTPFIVAAAFYLLMTLVLTWGFQRLEQRYAKYDQ " misc_feature 915835..916452 /locus_tag="Alide_0857" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature 915934..916419 /locus_tag="Alide_0857" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(915961..915972,915976..916005,916012..916017, 916021..916023,916096..916101,916105..916107, 916111..916113,916120..916125,916129..916131, 916141..916146,916153..916155,916204..916206, 916246..916251,916258..916260,916279..916290, 916297..916302,916339..916344,916369..916374, 916381..916386,916390..916395,916402..916407, 916414..916419) /locus_tag="Alide_0857" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(915979..916023,916279..916296) /locus_tag="Alide_0857" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(916021..916023,916081..916083,916297..916299, 916333..916335,916342..916344,916369..916371) /locus_tag="Alide_0857" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(916156..916194,916210..916215,916225..916227) /locus_tag="Alide_0857" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 916445..917224 /locus_tag="Alide_0858" /db_xref="GeneID:10102887" CDS 916445..917224 /locus_tag="Alide_0858" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_0713 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125511.1" /db_xref="GI:319761574" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102887" /translation="MPNTTSDVPMIEARGVVKRFGHNVVLRGVSLSVARGEVVAVIGP SGSGKSTFLRCLNHLETIDGGHVAIEGEPLATTDARGHCRYVLDAEVRRICAKTGMVF QHFNLFPHLTVLENLIEAPMVVQGLPRAEAVARAEKLLDKVGLSQKRDNYPARLSGGQ KQRVAIARALAMQPDIMLFDEPTSALDPELTGEVLRTMRELAEERMTMLVVTHEMGFA REVAHRVAFMDQGELITARPAQEFFADPGHERARAFLEHML" misc_feature 916469..917221 /locus_tag="Alide_0858" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature 916475..917143 /locus_tag="Alide_0858" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 916571..916594 /locus_tag="Alide_0858" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(916580..916585,916589..916597,916751..916753, 916982..916987,917081..917083) /locus_tag="Alide_0858" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 916742..916753 /locus_tag="Alide_0858" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 916910..916939 /locus_tag="Alide_0858" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 916970..916987 /locus_tag="Alide_0858" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 916994..917005 /locus_tag="Alide_0858" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 917069..917089 /locus_tag="Alide_0858" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene 917248..918552 /locus_tag="Alide_0859" /db_xref="GeneID:10102888" CDS 917248..918552 /locus_tag="Alide_0859" /inference="similar to AA sequence:KEGG:Veis_4017" /note="KEGG: vei:Veis_4017 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125512.1" /db_xref="GI:319761575" /db_xref="GeneID:10102888" /translation="MNLAPLPAQHAQRVLLHNEVHARPPEAMAAPLAISHIVMLADAA DRDASRAHLAALLRDHHLAPPDAHTTHLRADLGAFRIRWELHTEFVTWTFTVVPVGGI HAGEGRAPAAALEAVPRDWLALLPGECLCALHLWVAAGGGWSATPAQRGWLREESLVA SAVAEGQGEVYTDFAIHADGFSRMLLVAGALSHQRLGRLVQQLLEIETYRMAALLGLP AAREAGAALASAECELAALAEAIRSSRRDAEPALLDRLTWLAGQVEGQYAATHSRFSA SSAYFELVDRRIQDIAESRIAGLQTIGEFMERRLSPARSTCAWAARRQNALSERVSRM SSLLRTRVEIEQQQNNQALLVAMNRRGDLQLKLQSTVEGLSVAAITYYIVGLVSYLAK GAQKIGWPFSPESTAAVAIPLVAASVWWSLRRLHHRMFGEAH" misc_feature 917266..918534 /locus_tag="Alide_0859" /note="Protein of unknown function (DUF3422); Region: DUF3422; cl02073" /db_xref="CDD:154733" gene complement(918654..919613) /locus_tag="Alide_0860" /db_xref="GeneID:10102889" CDS complement(918654..919613) /locus_tag="Alide_0860" /EC_number="2.5.1.16" /inference="protein motif:PRIAM:2.5.1.16" /note="KEGG: ajs:Ajs_0746 spermidine synthase; PFAM: Spermine synthase" /codon_start=1 /transl_table=11 /product="spermidine synthase" /protein_id="YP_004125513.1" /db_xref="GI:319761576" /db_xref="InterPro:IPR001045" /db_xref="GeneID:10102889" /translation="MSGTPAAQATLYVAERLNADFGFYLSCGRPLAERRSAWQHIEVF DNAQFGRVMRIDGCFMTSERDEFFYHEPMVHLPAIAHPGVRTALVVGGGDGGAAEEML KLPGIERVVLAELDGDVVAMAREWLGAIHRGAFDDPRLQLRLGDARDLLVQGGERFDQ IVLDLTDPFGPAVELYTVEFYAACRRALNPGGVLSLHLGSPIHLPETMTRIAASVRAV FPVFRPYLQYVPLYGTLWCMAMASNDTDPALLGASEVDARIAARGLHGLQLYNGAMHQ ALLAQPNFVRALLARPTRPLRSGDVLDEVRDPSELPPVTVTTG" misc_feature complement(918759..919592) /locus_tag="Alide_0860" /note="spermidine synthase; Provisional; Region: PRK00811" /db_xref="CDD:179134" misc_feature complement(918759..919583) /locus_tag="Alide_0860" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(919613..920023) /locus_tag="Alide_0861" /db_xref="GeneID:10102890" CDS complement(919613..920023) /locus_tag="Alide_0861" /inference="protein motif:TFAM:TIGR03330" /note="KEGG: dia:Dtpsy_0715 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related" /codon_start=1 /transl_table=11 /product="s-adenosylmethionine decarboxylase proenzyme" /protein_id="YP_004125514.1" /db_xref="GI:319761577" /db_xref="GO:0004014" /db_xref="InterPro:IPR003826" /db_xref="InterPro:IPR017716" /db_xref="GeneID:10102890" /translation="MKNLQSVVPIAPAATPRKATGLHLIGDLYGCLCDSRLMLDAEYL ETFCKERVAAAGLTAVGSLFHSFGEGGGVTGVVVLAESHLSIHTWPEAGYVTLDVYVC NYTANNRPKAQKLFDDLQAAFNPKDPHLHRVDRA" misc_feature complement(919619..919957) /locus_tag="Alide_0861" /note="S-adenosylmethionine decarboxylase; Region: AdoMet_dc; cl00687" /db_xref="CDD:186145" gene 920390..921238 /locus_tag="Alide_0862" /db_xref="GeneID:10102891" CDS 920390..921238 /locus_tag="Alide_0862" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_0716 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125515.1" /db_xref="GI:319761578" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102891" /translation="MQPQSPASSDALVELCNVTFGYGERVILRDLSLTVPRGKVTALM GASGGGKTTVLRLIGGQQRAQQGEVLVAGQDVGRMDTAQLYAARRRMGMLFQFGALFT DMSVFENVAFPLREHTDLPEELIRDIVLMKLNAVGLRGARDLMPSQISGGMARRVALA RAIALDPELIMYDEPFAGLDPISLGTAAQLIRQLGDAMGLTTIVVSHDLEETFRLADH VIILGPGTVAAQGTPEEVRASTDPLVHQFVHALPTGPVPFHYPGPSVAQDFGPVGAQH QDGGTP" misc_feature 920408..921181 /locus_tag="Alide_0862" /note="ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127" /db_xref="CDD:31324" misc_feature 920426..921130 /locus_tag="Alide_0862" /note="ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex...; Region: ABC_Org_Solvent_Resistant; cd03261" /db_xref="CDD:73020" misc_feature 920522..920545 /locus_tag="Alide_0862" /note="Walker A/P-loop; other site" /db_xref="CDD:73020" misc_feature order(920531..920536,920540..920548,920675..920677, 920906..920911,921008..921010) /locus_tag="Alide_0862" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73020" misc_feature 920666..920677 /locus_tag="Alide_0862" /note="Q-loop/lid; other site" /db_xref="CDD:73020" misc_feature 920834..920863 /locus_tag="Alide_0862" /note="ABC transporter signature motif; other site" /db_xref="CDD:73020" misc_feature 920894..920911 /locus_tag="Alide_0862" /note="Walker B; other site" /db_xref="CDD:73020" misc_feature 920918..920929 /locus_tag="Alide_0862" /note="D-loop; other site" /db_xref="CDD:73020" misc_feature 920996..921016 /locus_tag="Alide_0862" /note="H-loop/switch region; other site" /db_xref="CDD:73020" gene 921235..922017 /locus_tag="Alide_0863" /db_xref="GeneID:10102892" CDS 921235..922017 /locus_tag="Alide_0863" /inference="protein motif:PFAM:PF02405" /note="PFAM: protein of unknown function DUF140; KEGG: dia:Dtpsy_0717 protein of unknown function DUF140" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125516.1" /db_xref="GI:319761579" /db_xref="InterPro:IPR003453" /db_xref="GeneID:10102892" /translation="MSWWRPSHVGYAVRSKLADLGMGARLFVRLVGLFGTAMRRFGLV RDQVHFLGNYSLSIIAMSGLFVGFVLALQGYNVLQLYGSANSLGLVVTLGLVRELGPV VTALLFAGRAGTSLTAEIGLMRAGEQLSAMEMMAVDPVQRILAPRFWGGVIAMPLLAA VFSAVGVIGGWLVGVVLIGVDGGAFWGQMQSSVDVWKDVGNGVVKSVVFGVAVTFIAV LQGYMAKPTPEGVSRATTRTVVMASLTVLGLDFVLTALMFSI" misc_feature 921358..922005 /locus_tag="Alide_0863" /note="Domain of unknown function DUF140; Region: DUF140; cl00510" /db_xref="CDD:186046" gene 922052..922540 /locus_tag="Alide_0864" /db_xref="GeneID:10102893" CDS 922052..922540 /locus_tag="Alide_0864" /inference="protein motif:PFAM:PF02470" /note="PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_0718 mammalian cell entry related domain protein" /codon_start=1 /transl_table=11 /product="mammalian cell entry related domain protein" /protein_id="YP_004125517.1" /db_xref="GI:319761580" /db_xref="InterPro:IPR003399" /db_xref="GeneID:10102893" /translation="MQHSKNDIWVGLFVLLGGAALVFLALQSANLLQLNFRSGYVITA RFDNIGGLKPKAAVRSAGVVVGRVQSISFDDKTYQARVALEIEKRYAFPKDSSLKILT SGLLGDQYIGIEPGAEEDNLADGSMVTNTQSAVVLENLIGQFLYGKAEQGAAPAGGGG KK" sig_peptide 922052..922138 /locus_tag="Alide_0864" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.885) with cleavage site probability 0.651 at residue 29" misc_feature 922166..922399 /locus_tag="Alide_0864" /note="mce related protein; Region: MCE; cl03606" /db_xref="CDD:186584" gene 922537..923277 /locus_tag="Alide_0865" /db_xref="GeneID:10102894" CDS 922537..923277 /locus_tag="Alide_0865" /inference="protein motif:PFAM:PF04333" /note="PFAM: VacJ family lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein" /codon_start=1 /transl_table=11 /product="vacj family lipoprotein" /protein_id="YP_004125518.1" /db_xref="GI:319761581" /db_xref="InterPro:IPR007428" /db_xref="GeneID:10102894" /translation="MTTDSRSRTRAARWAALLLGAALATGCATGPNANPADPFEPYNR GMTRFNENVDKAVLKPVATVYRDVTPRPVRTGVGNFFANLGDAWSFVNNLLQARGLEA YESLVRFSTNTVFGLGGLLDIASEAGIERHKQDFGLTLGRWGVPTGPYLVLPLLGPST VRDTAALPVDYFVGDPVGYVNDVPVRNSLDGLRFVDKRASLLHATSVLDEAALDSYSF TRDVYLKLRGGAKAGADDEEGGKLPDDY" sig_peptide 922537..922638 /locus_tag="Alide_0865" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.973 at residue 34" misc_feature 922627..923217 /locus_tag="Alide_0865" /note="VacJ like lipoprotein; Region: VacJ; cl01073" /db_xref="CDD:186319" gene 923395..924057 /locus_tag="Alide_0866" /db_xref="GeneID:10102895" CDS 923395..924057 /locus_tag="Alide_0866" /inference="protein motif:PFAM:PF05494" /note="PFAM: toluene tolerance family protein; KEGG: dia:Dtpsy_0720 toluene tolerance family protein" /codon_start=1 /transl_table=11 /product="toluene tolerance family protein" /protein_id="YP_004125519.1" /db_xref="GI:319761582" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR008869" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102895" /translation="MTNRRTLMQSAAALVVAAGLPWHQAALAADEAPDALIKRLSADV LETVRNDKSIKSGDVDKIMVLVNKAILPHVNFRRMTAAAVGPAWRSATPEQQKRLQDE FKTLLVRTYSGALSQVTDQTIVVKPLRAAPGDTDVLVRTEIRGRGDPVQLDYRLEKTP GEGGGWKIYNLNVLGVWLVDTYRPQFAQEINAKGVDGLIETLAARNKANAGTNAGVAG AK" sig_peptide 923395..923481 /locus_tag="Alide_0866" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.987 at residue 29" misc_feature 923503..924009 /locus_tag="Alide_0866" /note="Toluene tolerance, Ttg2; Region: Tol_Tol_Ttg2; pfam05494" /db_xref="CDD:191284" misc_feature 923503..924009 /locus_tag="Alide_0866" /note="ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2D; cl01074" /db_xref="CDD:186320" gene 924075..924347 /locus_tag="Alide_0867" /db_xref="GeneID:10102896" CDS 924075..924347 /locus_tag="Alide_0867" /inference="similar to AA sequence:KEGG:Dtpsy_0721" /note="KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS" /codon_start=1 /transl_table=11 /product="sulfate transporter/antisigma-factor antagonist stas" /protein_id="YP_004125520.1" /db_xref="GI:319761583" /db_xref="InterPro:IPR002645" /db_xref="GeneID:10102896" /translation="MLVLPAELTHRQASVSLRMLLQALKAQGEQQVVVDAGALATFDS SALAVLLECRRVAVSEGKGFMVKALPPALASLAGLYGVQELLPSLG" misc_feature 924078..>924272 /locus_tag="Alide_0867" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors; Region: STAS; cl00604" /db_xref="CDD:153881" gene 924411..925706 /locus_tag="Alide_0868" /db_xref="GeneID:10102897" CDS 924411..925706 /locus_tag="Alide_0868" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: cps:CPS_0452 sensory box protein; SMART: GGDEF domain containing protein; PAS domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004125521.1" /db_xref="GI:319761584" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR013656" /db_xref="GeneID:10102897" /translation="MSKPEPGAAPSGPAPDPFRQLLDEVGAFVYTIDLQGCYTYANRL VLELLGHPLDYVLGKDISHFFGEKSNQVIRENDARVLRGGETIAREETNLIKATGELR TYWSMKKPLRDAAGNIVGMLGISHDITEKKRLEDRVRKQKELLDTVLDNVDALVYMKD ANRRFVYANQHMADVLGLPVERIVGSLDTDLLPRDLADRFWAMDQKIFASGQRQSSEE AVVDACGRLRHYWRVVVPLPAPDGTPAVIGLSTDITELHELKEELRRQASTDGLTGLA NRRSFCERAGHEFARSRRHGTPLSLIAIDIDHFKRFNDSYGHPLGDRVLCAFAACCQS MLREADLCARTGGEEFCILLPDTGLDDARRIAERIRVSAGSLCVDGQSPQLRISASFG VASLESGDQAFDTLFSRADRALYCAKQQGRDCIFAWPGG" misc_feature 924462..924656 /locus_tag="Alide_0868" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 924474..924809 /locus_tag="Alide_0868" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature 924837..925037 /locus_tag="Alide_0868" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 924855..925184 /locus_tag="Alide_0868" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature 925215..925685 /locus_tag="Alide_0868" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(925323..925325,925452..925454) /locus_tag="Alide_0868" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(925338..925340,925347..925352,925362..925364, 925374..925376,925440..925442,925446..925457) /locus_tag="Alide_0868" /note="active site" /db_xref="CDD:143635" misc_feature order(925428..925430,925512..925514) /locus_tag="Alide_0868" /note="I-site; other site" /db_xref="CDD:143635" gene 925788..926708 /locus_tag="Alide_0869" /db_xref="GeneID:10102898" CDS 925788..926708 /locus_tag="Alide_0869" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_0722 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125522.1" /db_xref="GI:319761585" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102898" /translation="MTAVSFQSVSKTFPTPRGPFQALHGVSLDIEEGEFFGLLGPNGA GKTTLISILAGLSRATQGRVTVLGHDVQADFARARQCLGVVPQELVFDPFFNVRETLR LQSGYFGVKNNDAWIDELLESLGLADKATANMRQLSGGMKRRVLVAQALVHKPPIIVL DEPTAGVDVELRQTLWQFIARLNKQGHTVLLTTHYLEEAEALCGRIAMLKNGRVVALD STSELLQSANASVLQFKTDAPLPAALARLARVTGRIVQLPAHDAAEIEHHLAALREAG VASEDVEIRRADLEDVFIKVMGSEAAEAVA" misc_feature 925788..926681 /locus_tag="Alide_0869" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:31326" misc_feature 925797..926456 /locus_tag="Alide_0869" /note="The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency...; Region: ABC_subfamily_A; cd03263" /db_xref="CDD:73022" misc_feature 925905..925928 /locus_tag="Alide_0869" /note="Walker A/P-loop; other site" /db_xref="CDD:73022" misc_feature order(925914..925919,925923..925931,926046..926048, 926268..926273,926367..926369) /locus_tag="Alide_0869" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73022" misc_feature 926037..926048 /locus_tag="Alide_0869" /note="Q-loop/lid; other site" /db_xref="CDD:73022" misc_feature 926196..926225 /locus_tag="Alide_0869" /note="ABC transporter signature motif; other site" /db_xref="CDD:73022" misc_feature 926256..926273 /locus_tag="Alide_0869" /note="Walker B; other site" /db_xref="CDD:73022" misc_feature 926280..926291 /locus_tag="Alide_0869" /note="D-loop; other site" /db_xref="CDD:73022" misc_feature 926355..926375 /locus_tag="Alide_0869" /note="H-loop/switch region; other site" /db_xref="CDD:73022" gene 926705..927460 /locus_tag="Alide_0870" /db_xref="GeneID:10102899" CDS 926705..927460 /locus_tag="Alide_0870" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: aav:Aave_1020 ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="abc-2 type transporter" /protein_id="YP_004125523.1" /db_xref="GI:319761586" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="InterPro:IPR013526" /db_xref="GeneID:10102899" /translation="MTGWQTLFYKEVLRFWKVAFQTVAAPVLTAVLYLLIFSHVLEDR VQVYGQLSYTAFLVPGLVMMSMLQNSFANSSSSLIQSKIMGNLVFVLLTPLSHWAWFT AYVGSSVLRGLLVGLGVFAVTLAFARPAFSALPWVFVFALLGAALLATLGVIAGLWAD KFDQMASFQNFLIMPMTFLSGVFYSIHSLPPFWQHASRFNPFFYMIDGFRYGFFGVSD VSPWLSLAIVGGAWLAVSFLALRLLRTGYKIRN" misc_feature 926705..927457 /locus_tag="Alide_0870" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene 927474..927722 /locus_tag="Alide_0871" /db_xref="GeneID:10102900" CDS 927474..927722 /locus_tag="Alide_0871" /inference="protein motif:PFAM:PF01722" /note="PFAM: BolA family protein; KEGG: dia:Dtpsy_0724 BolA family protein" /codon_start=1 /transl_table=11 /product="bola family protein" /protein_id="YP_004125524.1" /db_xref="GI:319761587" /db_xref="InterPro:IPR002634" /db_xref="GeneID:10102900" /translation="MTADQIKDIISAAMACDYITLEGDGRHWYAVIVSAEFEGKRPIQ RHQRVYATLGDKMQRDEVHALSMKTFTPAEWAAARQQA" misc_feature 927474..927713 /locus_tag="Alide_0871" /note="BolA-like protein; Region: BolA; cl00386" /db_xref="CDD:185958" gene 927747..929021 /locus_tag="Alide_0872" /db_xref="GeneID:10102901" CDS 927747..929021 /locus_tag="Alide_0872" /inference="protein motif:TFAM:TIGR01072" /note="KEGG: ctt:CtCNB1_0710 UDP-N-acetylglucosamine; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)" /codon_start=1 /transl_table=11 /product="udp-n-acetylglucosamine 1-carboxyvinyltransferase" /protein_id="YP_004125525.1" /db_xref="GI:319761588" /db_xref="GO:0016740" /db_xref="InterPro:IPR001986" /db_xref="InterPro:IPR005750" /db_xref="InterPro:IPR020683" /db_xref="GeneID:10102901" /translation="MDKLLVRGGRALRGEVVISGAKNAALPEMCAALLTDEPVHLINV PRLHDVRTMRRLLDNMGVKTETHGERGGMSFVAPDALSPEAPYELVKTMRASVLALGP LLARFGEATISLPGGCAIGSRPVDQHIKGLQAMGAHIVVEHGYMIAKLPAGQQRLRGA RITTDMITVTGTENLLMAATLAEGETVLENAAQEPEVTDLAEMLIAMGARIEGHGTSR IRIQGVERLHGCTHQVVADRIEAGTFLCAVAAAGGEAFLRHARADHLDAVIDKLLEAG ARVAAEGDGIRISSPGGAELKAQSFRTTEYPGFPTDMQAQFMALNVVAQGTAMVAETI FENRFMHVNELARLGAQIAIDGRVATVTGGARLSGATVMATDLRASASLVIAGLIASD ETLVDRIYHLDRGYDAMEAKLRGLGADIERIQ" misc_feature 927747..929015 /locus_tag="Alide_0872" /note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated; Region: PRK09369" /db_xref="CDD:181804" misc_feature 927780..928994 /locus_tag="Alide_0872" /note="UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555" /db_xref="CDD:30128" misc_feature order(927798..927809,928446..928457) /locus_tag="Alide_0872" /note="hinge; other site" /db_xref="CDD:30128" misc_feature order(927813..927815,928026..928028,928038..928040, 928113..928130,928242..928244,928251..928256, 928680..928682) /locus_tag="Alide_0872" /note="active site" /db_xref="CDD:30128" gene 929018..929668 /locus_tag="Alide_0873" /db_xref="GeneID:10102902" CDS 929018..929668 /locus_tag="Alide_0873" /EC_number="2.4.2.17" /inference="protein motif:TFAM:TIGR00070" /note="TIGRFAM: ATP phosphoribosyltransferase; KEGG: dia:Dtpsy_0726 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase catalytic region" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase" /protein_id="YP_004125526.1" /db_xref="GI:319761589" /db_xref="GO:0003879" /db_xref="InterPro:IPR013820" /db_xref="InterPro:IPR018198" /db_xref="GeneID:10102902" /translation="MTQQITLALSKGRIFEETLPLLAAAGIEVLEDPEKSRKLILPTS RPEVRVVLVRATDVPTYVQYGGADLGVAGKDSLIEHGGQGLFRPLDLQIAKCRVSVAV RAGFDYRAAVTQGSRLKVATKYTSIARDFFSAKGVHVDMIKLYGSMELAPLTGLADAI VDLVSTGNTLKANNLVEVEQIMDISSHLVVNQAALKLKQAPLKRIIDAFASAVPQG" misc_feature 929021..929665 /locus_tag="Alide_0873" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 929673..930989 /locus_tag="Alide_0874" /db_xref="GeneID:10102903" CDS 929673..930989 /locus_tag="Alide_0874" /EC_number="1.1.1.23" /inference="protein motif:TFAM:TIGR00069" /note="TIGRFAM: histidinol dehydrogenase; KEGG: aav:Aave_1024 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase" /codon_start=1 /transl_table=11 /product="histidinol dehydrogenase" /protein_id="YP_004125527.1" /db_xref="GI:319761590" /db_xref="GO:0004399" /db_xref="GO:0008270" /db_xref="GO:0051287" /db_xref="InterPro:IPR001692" /db_xref="InterPro:IPR012131" /db_xref="GeneID:10102903" /translation="MQFVAAPARLSTVSDAFEADFAARLHWSADQDAAIEERVAAILA DVQQRGDAAVLDYTRRFDGLQADGVAALELTQAELKAAYDGLPDAQRQALSAAAARVR SYHEAQKKACGESWSYRDEDGTLLGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAHV AGVPEIIMVVPTPRGEKNPLVLAAACVAGVTRAFTIGGAQAVAALAHGTATIPKVDKI TGPGNAYVASAKKRVFGQVGIDMIAGPSEILVLADGSTPPDWVAMDLFSQAEHDELAQ SILLCPDAAYIDAVQREIDRLLPQMPRAEIIARSLTGRGALIHTRSMEEACEISNRIA PEHLEVSSRDPHKWEPLLRHAGAIFLGAYTSESLGDYCAGPNHVLPTSGTARFSSPLG VYDFQKRSSLIEVSEQGAQALGRIASVLAHGEGLQGHARAAEMRLK" misc_feature 929775..930959 /locus_tag="Alide_0874" /note="E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-...; Region: Histidinol_dh; cd06572" /db_xref="CDD:119329" misc_feature 929781..930986 /locus_tag="Alide_0874" /note="Histidinol dehydrogenase [Amino acid transport and metabolism]; Region: HisD; COG0141" /db_xref="CDD:30490" misc_feature order(929853..929855,930087..930089,930093..930098, 930120..930122,930183..930185,930261..930266, 930270..930272,930333..930341,930345..930350, 930483..930485) /locus_tag="Alide_0874" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature order(929937..929942,929949..929954,929958..929960, 929967..929972,929979..929984,929991..929996, 930024..930026,930030..930032,930042..930056, 930063..930065,930069..930071,930105..930119, 930318..930320,930363..930365,930375..930377, 930447..930452,930459..930464,930468..930476, 930480..930485,930693..930695,930708..930710, 930717..930722,930726..930752,930756..930758, 930762..930767,930771..930785,930789..930791, 930795..930797,930825..930830,930834..930848, 930852..930857,930864..930887,930930..930935, 930939..930959) /locus_tag="Alide_0874" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119329" misc_feature order(930111..930113,930117..930119,930408..930410, 930483..930485,930678..930683,930768..930770, 930780..930785,930801..930803,930942..930944, 930948..930950,930957..930959) /locus_tag="Alide_0874" /note="product binding site; other site" /db_xref="CDD:119329" misc_feature order(930117..930119,930408..930410,930474..930476, 930483..930485,930678..930683,930768..930770, 930780..930785,930801..930803,930942..930944, 930948..930950,930957..930959) /locus_tag="Alide_0874" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature order(930474..930476,930483..930485,930780..930782, 930957..930959) /locus_tag="Alide_0874" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:119329" misc_feature 930678..930683 /locus_tag="Alide_0874" /note="catalytic residues [active]" /db_xref="CDD:119329" gene 931108..931386 /locus_tag="Alide_0875" /db_xref="GeneID:10102904" CDS 931108..931386 /locus_tag="Alide_0875" /inference="similar to AA sequence:KEGG:Daci_5523" /note="KEGG: dac:Daci_5523 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125528.1" /db_xref="GI:319761591" /db_xref="GeneID:10102904" /translation="MKNLTITVEDSVLEWARVEAARRGTSVSRMVGDFMAEMMQREDA YERAYLAWRTDERGWQGPAAADAPEMQARSASLKRTGGQKRPRNGAAA" gene 931383..931835 /locus_tag="Alide_0876" /db_xref="GeneID:10102905" CDS 931383..931835 /locus_tag="Alide_0876" /inference="similar to AA sequence:KEGG:CtCNB1_0716" /note="KEGG: ctt:CtCNB1_0716 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125529.1" /db_xref="GI:319761592" /db_xref="GeneID:10102905" /translation="MSAMGTVFVDTSVLIAAEDVAGGDLYRATLDWLDALWRMRTGRT GNQALVEFYDQVTTAATPMPQGDARAAIRRYQTWAPWKTDAATLETAWAVQARHQLNF GDCLAVACAQHSGCSHMLSLHLPHGAEFGGVTVLHPLRQPAPAPQEGA" misc_feature 931383..931811 /locus_tag="Alide_0876" /note="PIN (PilT N terminus) domain: Superfamily; Region: PIN_SF; cl14812" /db_xref="CDD:196829" gene 931853..932971 /locus_tag="Alide_0877" /db_xref="GeneID:10102906" CDS 931853..932971 /locus_tag="Alide_0877" /inference="protein motif:TFAM:TIGR01141" /note="KEGG: dia:Dtpsy_0729 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="histidinol-phosphate aminotransferase" /protein_id="YP_004125530.1" /db_xref="GI:319761593" /db_xref="GO:0004400" /db_xref="InterPro:IPR004839" /db_xref="InterPro:IPR005861" /db_xref="GeneID:10102906" /translation="MTDATPQSLALQRIRADVRAMHAYAVHDATGYLKMDAMENPFGL PPALQAALGQRLGQLALNRYPGTRQNDLKAALAAHALAPEGSALILGNGSDELIGLVQ LACARRDASGPAKVLAPAPGFVMYAMCAQQHGLQYVGVDLDGEFQLREQAMLDAIAEH RPALTFLAYPNNPTATLWDEAVVQRIADAVAAVGGIVVMDEAYQPFASRSWIDRMRAE PVRNGHVLLMRTLSKFGLAGVRLGYMIGPAALVHEIDKLRPPYNVSVLNCEAALFALE HAGVFAAQAAELRAARTDLLAALRAMPGVEKVWDSQANMVLVRVADSARAYEGMKARK VLVKNVSTMHPSLANCLRLTVGSHADNAQMLAALQASL" misc_feature 931895..932956 /locus_tag="Alide_0877" /note="histidinol-phosphate aminotransferase; Region: hisC; TIGR01141" /db_xref="CDD:162223" misc_feature 932117..932962 /locus_tag="Alide_0877" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(932129..932137,932219..932221,932366..932368, 932459..932461,932540..932542,932546..932551, 932570..932572) /locus_tag="Alide_0877" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(932138..932140,932249..932251,932438..932440, 932564..932572,932651..932653,932660..932662) /locus_tag="Alide_0877" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 932549..932551 /locus_tag="Alide_0877" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 932968..933600 /locus_tag="Alide_0878" /db_xref="GeneID:10102907" CDS 932968..933600 /locus_tag="Alide_0878" /EC_number="4.2.1.19" /inference="protein motif:PRIAM:4.2.1.19" /note="KEGG: dia:Dtpsy_0730 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase" /codon_start=1 /transl_table=11 /product="imidazoleglycerol-phosphate dehydratase" /protein_id="YP_004125531.1" /db_xref="GI:319761594" /db_xref="InterPro:IPR000807" /db_xref="InterPro:IPR020565" /db_xref="GeneID:10102907" /translation="MTSSALVTSSPDPCADRTAEVSRNTAETRISVRVNLDGTGQASL HTGIGFFDHMLDQIARHGLIDLDVRCDGDLHIDGHHTVEDVGITLGQAFARAVGDKKG IRRYGHAYVPLDEALSRVVVDFSGRPGLHLHIPFTAASIGGFDTQLTYEFFQGFVNHA GVTLHIDNLKGINAHHQCETVFKAFARALRAALERDPRAAGVIPSTKGSL" misc_feature 933022..933597 /locus_tag="Alide_0878" /note="Imidazoleglycerol-phosphate dehydratase; Region: IGPD; cd07914" /db_xref="CDD:153419" misc_feature order(933046..933048,933124..933126,933136..933138, 933145..933150,933202..933207,933214..933216, 933280..933282,933304..933309,933346..933348, 933418..933420,933490..933495,933502..933504) /locus_tag="Alide_0878" /note="putative active site pocket [active]" /db_xref="CDD:153419" misc_feature order(933112..933117,933124..933126,933190..933198, 933202..933207,933379..933393,933400..933402, 933406..933408,933415..933420,933481..933495) /locus_tag="Alide_0878" /note="4-fold oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153419" misc_feature order(933124..933126,933202..933207,933214..933216, 933418..933420,933490..933495,933502..933504) /locus_tag="Alide_0878" /note="metal binding residues [ion binding]; metal-binding site" /db_xref="CDD:153419" misc_feature order(933277..933279,933283..933285,933289..933297, 933301..933309,933313..933318,933328..933336, 933346..933348,933352..933354,933454..933456, 933460..933462,933466..933468,933472..933474, 933532..933534,933541..933543,933559..933561) /locus_tag="Alide_0878" /note="3-fold/trimer interface [polypeptide binding]; other site" /db_xref="CDD:153419" gene 933651..934319 /locus_tag="Alide_0879" /db_xref="GeneID:10102908" CDS 933651..934319 /locus_tag="Alide_0879" /inference="protein motif:TFAM:TIGR01855" /note="KEGG: dia:Dtpsy_0731 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase, glutamine amidotransferase subunit" /protein_id="YP_004125532.1" /db_xref="GI:319761595" /db_xref="GO:0004400" /db_xref="InterPro:IPR000991" /db_xref="InterPro:IPR010139" /db_xref="InterPro:IPR016226" /db_xref="InterPro:IPR017926" /db_xref="GeneID:10102908" /translation="MNSEVKTVVVVDYGMGNLRSVSQAVQAAAEGSGWRVAVSASPEQ VRAAQRVVLPGQGAMPDCMRELRESGLLEPVLEAAASKPLFGVCVGMQMLLDHSAEGD TPGLGLIPGEVLKFDLAGRTQPDGSRYKVPQMGWNRVRQIRHAGIVHPVWAGVPDDSY FYFVHSFYARPADPAHVAGEADYGVPFAAAIARDNIFATQFHPEKSAEHGLALYRNFL HWNP" misc_feature 933666..934316 /locus_tag="Alide_0879" /note="imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13146" /db_xref="CDD:183871" misc_feature 933672..934304 /locus_tag="Alide_0879" /note="Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748" /db_xref="CDD:153219" misc_feature order(933798..933821,933906..933920,934254..934256, 934260..934262) /locus_tag="Alide_0879" /note="putative active site [active]" /db_xref="CDD:153219" misc_feature 933798..933821 /locus_tag="Alide_0879" /note="oxyanion strand; other site" /db_xref="CDD:153219" misc_feature order(933912..933914,934254..934256,934260..934262) /locus_tag="Alide_0879" /note="catalytic triad [active]" /db_xref="CDD:153219" gene 934372..935115 /locus_tag="Alide_0880" /db_xref="GeneID:10102909" CDS 934372..935115 /locus_tag="Alide_0880" /EC_number="5.3.1.16" /inference="protein motif:TFAM:TIGR00007" /note="TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: ajs:Ajs_0765 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein" /codon_start=1 /transl_table=11 /product="phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase" /protein_id="YP_004125533.1" /db_xref="GI:319761596" /db_xref="GO:0003949" /db_xref="InterPro:IPR006062" /db_xref="InterPro:IPR006063" /db_xref="GeneID:10102909" /translation="MLLIPAIDLKDGHCVRLKQGDMDQSTTFGEDPAAMARKWVDAGA RRLHLVDLNGAFAGQPKNKAAIKAILAEVGSDIPVQLGGGIRDLDTIERYIDAGLEYV IIGTAAVKNPGFLKDACSAFGGHIIVGLDAKDGKVATDGWSKLTGHEVVDLARKFEDW GVESIIYTDIGRDGMLSGINVEATVKLAQALTIPVIASGGLAGMADIEKLCEVEDEGV EGVICGRAIYSGDLDFAAAQARADELAGA" misc_feature 934372..935100 /locus_tag="Alide_0880" /note="Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]; Region: HisA; COG0106" /db_xref="CDD:30455" misc_feature 934375..935088 /locus_tag="Alide_0880" /note="HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-...; Region: HisA; cd04732" /db_xref="CDD:73394" misc_feature order(934393..934395,934513..934515,934762..934764) /locus_tag="Alide_0880" /note="catalytic residues [active]" /db_xref="CDD:73394" gene complement(935122..936318) /locus_tag="Alide_0881" /db_xref="GeneID:10102910" CDS complement(935122..936318) /locus_tag="Alide_0881" /inference="similar to AA sequence:KEGG:Ajs_0766" /note="KEGG: ajs:Ajs_0766 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125534.1" /db_xref="GI:319761597" /db_xref="GeneID:10102910" /translation="MHLRSRPSHSLAASLLTLAAALTGCGGGSGQGSDSGSSPAASSA EVAFTAPAEADNVHTVNTPVQLQLSVKIAGAAAPDGTAITLSGPASASFAPVQPQTRG GVATSSLTAAQAGEMQLQALAAATQDKAGAATRTLYIRSQPQPLELLVPAYFSAGPGS DWEKLASGAQSFPAVPITAILNPSNGIFTKEDPLFTAAITAFRQNGGKVLGYVYTRYG TGARSVADIQRNIDNYRKIYGTQVDGFFLDEMDATSKQLGFYREIYQYIKGLDSRLRV VGNPGTYPVADSASVVDALVSFEGQAVDYRSVTPQPANKWVYNLANGAQAALVHDAAN CGAMQEVLRSANTPQRNTGLVYATDRHYDYPTNTGNPWATLPAYWEQMLGTADAINKG RALPGC" sig_peptide complement(936220..936318) /locus_tag="Alide_0881" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.419 at residue 33" misc_feature complement(935155..935883) /locus_tag="Alide_0881" /note="Spherulation-specific family 4; Region: Spherulin4; pfam12138" /db_xref="CDD:152573" gene complement(936386..937759) /locus_tag="Alide_0882" /db_xref="GeneID:10102911" CDS complement(936386..937759) /locus_tag="Alide_0882" /inference="similar to AA sequence:KEGG:Ajs_0767" /note="KEGG: ajs:Ajs_0767 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004125535.1" /db_xref="GI:319761598" /db_xref="GeneID:10102911" /translation="MAGIGFELRHMLRKNTLLSLVQAYAYAGVIGSGPWVLSIVGILL VGIFSASVVVPATLVTQFQTSVTYLVASSLIYTSLVQLAFTRFISDRLFEKHKHLVMP NLHGLMVIVLLGAGVLATLALFIVLPGLGLAYRLLMLAGFMLMSGVWVLTVLLSGMKR YKAIVGLFGLAYGLIVASALLLRPWGLEGLLGAFVLGHFVLLAGMWLLVVKEFHPARQ LISFDFLQPDKLYPSLVAVGLLYNLGIWADKFMFWFFPPTSQPIIGHLRASLIYDLPV FLSYLSIIPGMAVFLVRIETDFVEYYDKFYDAVRGGGSLEYIEAMRDEMVYAIQQGLG EIAKIQTLAVLVTFVAGPWLLDTLGISRLYLPLLHVQVVGAGLQVGLMAVLNVFFYLD QRRTVLLLCAMFVLLNVALTGLTLAFGAALYGYGFALATLLTLAAGLLLLSRRLHRLE YQTFMLQ" misc_feature complement(936536..937759) /locus_tag="Alide_0882" /note="Predicted membrane protein [Function unknown]; Region: COG4267" /db_xref="CDD:33989" gene complement(937759..939291) /locus_tag="Alide_0883" /db_xref="GeneID:10102912" CDS complement(937759..939291) /locus_tag="Alide_0883" /inference="protein motif:PFAM:PF00534" /note="PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_0768 glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_004125536.1" /db_xref="GI:319761599" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10102912" /translation="MNHPKAQSADIALMLEGTFPYVSGGVSSWINQIIRAYPEYRFAI VFLGSRREDYGGFKYPLPDNVVHFEEHFLHEQAHWHPQPAARRGDAQGQALVQRLLDA FDQGPAAPRAMEAFREVAQQMMPGGSVQLGDFLYSKRAWDIICGIYRAHCADPSFVDF FWTVRLMLQPLWLLARVARQLIPVRAVHCASTGYAGFLGALLAQTRGVPLILSEHGIY TKERKIDLFKSEWIRDNRNIFQRDPTELSYFRQMWIHFFEWLGRYCYAHADPILALYE ANRLRQVQDGAAPERTANIPNGIKLERFAPLRAQRPLEPPPVLCLIGRVVPIKDIKTF IRAMRRVVNQRPDAQGWIAGPAEEDPAYAEECSNLVRSLGLQEHVRFLGMQRVEDLMP RIGLVVLSSISEALPLVLLEGYAAGVPAVSTDVGSCRQLLEGLDEEDRALGPSGAVVP IAEPQQLADAALQLLGDTAAWQAASRAAIARVERYYTDTLMFDRYRQVYEHALARTPG AA" misc_feature complement(937792..939264) /locus_tag="Alide_0883" /note="This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule...; Region: GT1_like_3; cd03813" /db_xref="CDD:99984" gene complement(939288..940289) /locus_tag="Alide_0884" /db_xref="GeneID:10102913" CDS complement(939288..940289) /locus_tag="Alide_0884" /inference="similar to AA sequence:KEGG:Ajs_0769" /note="KEGG: ajs:Ajs_0769 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004125537.1" /db_xref="GI:319761600" /db_xref="GeneID:10102913" /translation="MLNLKLGLSALGLEVSAWSGAWLLAERSDAALASYLLLHAAASV LLSLSLLPLLPPRLSKPRWATLLLMTACSYAVPVAGFLGVIAAFVILRLYRRRSLPED FDAVQLPEFDQHQRRQSQFRHAGLHSFLTNAQVPVQARMRAMAALQYASGRTASPLLR SVFGDASEDLRLLAYGMLDNLEKRINRAIDSELDALQAALPDSSQQLQSAHRLSDLYW ELVYQALVQGDLHAHAIQESLRYCQLVLQRQEGNAAMHLRRGRLLHALGRTQEAEHAY DKARALGLPATRVLPYLAQLAFERRDHAQAQALMRELRQWGALPRLRPVIDYWSQRP" gene complement(940282..941676) /locus_tag="Alide_0885" /db_xref="GeneID:10102914" CDS complement(940282..941676) /locus_tag="Alide_0885" /inference="similar to AA sequence:KEGG:Ajs_0770" /note="KEGG: ajs:Ajs_0770 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004125538.1" /db_xref="GI:319761601" /db_xref="GeneID:10102914" /translation="MPTPSDSPGARRQTAGENARPRALPGTGLPRHLLGRLAIAATHP AVTVGETLLLPLLAVALGLAWAPQDPLQIQATFPWPWLAPVVLALRYGPMAGLGGASV LLACWLGLNAGHWGNFPQLYFLGGLILVMLVGEFSSLWQARTRRAETLQLYLDQRLEH LVRQHYLLRLSHDRLEQELIARPMSMRDALAALRHAGSEDGGDALAPQALLRLLSQYC QLECAAMHAVSDGHAAARPSASIGAYDGLHADDPLVRQALQTGQLCHVSQAVTAQQDT RYLVAAPLLDLAGDMYGLLVVQDMPFFALQEESLQTIQLLLGYYTDGLSMSQLAQPIV QQFPDCPPLFAFELQRLAHIHRSTQVPSIVVALELQQRALEQDLPPQIERLKRELDEV WRIEAPGRQVLAVLMPLGNATTAEGYIHRLEGWMQHKSQQSLAQAGIFPHVVQPDSAQ PVRTVQRLHAIAHA" gene complement(941684..942238) /locus_tag="Alide_0886" /db_xref="GeneID:10102915" CDS complement(941684..942238) /locus_tag="Alide_0886" /inference="similar to AA sequence:KEGG:Ajs_0771" /note="KEGG: ajs:Ajs_0771 lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_004125539.1" /db_xref="GI:319761602" /db_xref="GeneID:10102915" /translation="MLHRRPSRARQLGLLLATGAIALLSACSTLDQGHPPQLARQASW VVLPFANHTETPLAGQRAEAIAQALLSAQGVGQVRRTPATTQQEALFGAGDAQRSEDA LAWAREQKIRYALAGSVEEWRYKVGVDGEPAAGVTLQILDVATGDTLWSGSGGQSGWS REALSAVAQKLIRKLLQSGLAGSR" sig_peptide complement(942137..942238) /locus_tag="Alide_0886" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.593 at residue 34" gene complement(942260..946063) /locus_tag="Alide_0887" /db_xref="GeneID:10102916" CDS complement(942260..946063) /locus_tag="Alide_0887" /inference="similar to AA sequence:KEGG:Ajs_0772" /note="KEGG: ajs:Ajs_0772 TPR repeat-containing protein" /codon_start=1 /transl_table=11 /product="tpr repeat-containing protein" /protein_id="YP_004125540.1" /db_xref="GI:319761603" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10102916" /translation="MACGALWLLYPRQDLEQRLATSGETELSTAYLNNLLRSDPDNPR LRLLLAQRQIAHGDTASARTTLQPALDSADPALRKEALWAQWDLLHSEYRHVPDREPD RRLALLDGLRRHIRQLAQESWPQERQDRLAALAGQFGEQEIALALSRREAPQDPREAA LYYEREAREALARGDYEGCAQLYLSARDSTPDPAQAKAYYGAAIAALRSGNQTAAALE LAERELGPLADDPQTLFMLTQLARAAGRPDVAEHYVRRLLRMALERQATQWASAEQDF ALRPVAWRPQPPAALAGPVFDDGADLLVHPALRLAQQVADKASARPSPALPFDDKTYT LGYEVFLENRKLEDAWTIANAAVRQNPADMRWRERLAQVSEWTQRPGIALENWLVLAR QTNQDAAWQAVLRLAPGQFDDAALVQALRHQLRSRSGDPRLMRALVDAQERLGEPQPA IDYLRQHAQDPEALELLAQLAERAGQPDLALQTWRQLLADPAQITPERAMHAAVLALQ HRQPELGLQWLQAVQDHPPASAEAAAELWRFTGDLARSRARDQLAIAAYRKLVDAQHA DVADYDALIGLLQQDQPLEAAKVALLAWQQHDEPRHLIEALTLYSSRNQWNEFAHALD QLDPTPDAARHSLARMRRSGQFLRLVGGYHHNAGRFAEARQYYEEGLAIDPASSDMRQ ALLWLLIDSNDAASIRRLLAAHEQAWSADEDLHEALAAAYQALSLPQVALHRYLSPHV AEREGDFLWLMNYADALEQNQEADRAWRLRRHLLSQQWQEGRNGRRLTPAQARQRWLT EEGLEATQRVARARLILLQRPGDPAQEVLRELLRLDRDAQGGYSNAAAETAIGWLQDA GEYTAERGFLWHQYARSRSLRTNRPLWAEITVALAEDDKAAAGQLLQEFDERLPRYDR VNTAAAVGDIRLAQSAAFETQESQPDDNPLHLQLTDNLLAFSDHAGMLSRHSDLGAID EDQAEARLHLAISPRLSLDLDASRIQRRVTAPDQLRDAPGEDIAGALLRWGHADGETR LRVASRRGYADTTPLSIEHEQRLDNRLSLRGELGWHLPSEESLALRLGGMKTRVAAHL RYQATRQDSLLLSQWSEQYRLQTGAEVGRGRHTAIEYSHAYRQDAPTWEWGAFWSTHR FERRHPFFLGQQGQDFLQRFAPAGVTSLGLDYFLPESFQFYGVRLSTNMRFEQDHTRA LRPFASVSLTRHSLLGAGYDLRLGLAGSVLGPDHLRLSFGLGKSGVQSLGLTRVLELS YRLHF" misc_feature complement(<943961..944641) /locus_tag="Alide_0887" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" gene complement(946110..948941) /locus_tag="Alide_0888" /db_xref="GeneID:10102917" CDS complement(946110..948941) /locus_tag="Alide_0888" /inference="protein motif:PFAM:PF03537" /note="PFAM: TM1410 hypothetical protein-related protein; polysaccharide deacetylase; KEGG: ajs:Ajs_0773 polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="tm1410 hypothetical protein-related protein" /protein_id="YP_004125541.1" /db_xref="GI:319761604" /db_xref="GO:0003824" /db_xref="InterPro:IPR002509" /db_xref="InterPro:IPR004352" /db_xref="InterPro:IPR016925" /db_xref="GeneID:10102917" /translation="MAFRFLLQLLQLCTRLAWGLALLPLAWSAQAATPAVALYYGHEI PLGEFRAFDLLVVDPDHEAARQARALEPATKVYAYVSVTEVQPSRGYHADIPADWKLA RNQDWQSEVIDQSVAAWPDFFASRVVAPLWERGFRGFFLDTLDSYRLAGTFDEQAQQQ GLVRVIETLHQRFPGIRLILNRGFDILPQVRGMVEMVAAESLYQRWNAKTRRYEEVPN QDRQWLMDQLRTVRQRDGLPVLVIDYVSPHDRALTRATAQRILQDGFIPWVTDAQLAT IGMGSIEPVPRRVLVLYNGGESPALNYANAHRFLQMPLNHMGYVTDYVDVRDSLPGLM ARDRYAGVVSWFSGYVPAAKRAGLSQWLQARIHEGMPLAVVGDWGMTPDRVLTRSLGL ALDRAEPQGALRQVQLAPMMGLENPLPLPSRQTELVQLAPDMARQAQPLVELRDARGR TFVGGAITPWGGFILDPNVLFEIPGTEDARWLVDPFAFLQQALRLPAIPVPDTTTENG RRLLLAHVDGDGFPSLAEFPGSPLAAQVLLKEIFEKYRIPQTMSVIEAEVAPDGLYPG LSPRMEEVARKIFRLPHIEVGSHTYSHPFLWDANVQHGLFKENPEAAQSLVVPGYTMD LEREIVGSSHYINERLAPSGKPVKVLQWTGDTAPSARALEITHRAGLLNINGGDTSIS RANPSLTAVGALGIRKGGFLQVYAPITNENIYTNLWTGPYYGFERAIETFEMTDSPRR IKPVGIYYHTYSASKPAALKALKKVYDWALAQPLHPVHASEFVTKVQDFYDYAMARDG EGWRLRSSNGALRTVRLPPALGLPRLGASQAVAGWRRGGEGLYVHLSGPSAFLQTDGR EAATPYLHDANARLVDWQAEGDGRRVQFTLQGHVPLEFALANTQACQVRAGQRTLTAL RPAAQDRTAVQQFKLPDAAAQIQILCPER" misc_feature complement(948210..948836) /locus_tag="Alide_0888" /note="TM1410 hypothetical-related protein; Region: DUF297; cl00997" /db_xref="CDD:194002" misc_feature complement(946920..>947321) /locus_tag="Alide_0888" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene 949114..950130 /locus_tag="Alide_0889" /db_xref="GeneID:10102918" CDS 949114..950130 /locus_tag="Alide_0889" /inference="protein motif:TFAM:TIGR01179" /note="KEGG: ajs:Ajs_0774 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="udp-glucose 4-epimerase" /protein_id="YP_004125542.1" /db_xref="GI:319761605" /db_xref="GO:0003978" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR005886" /db_xref="InterPro:IPR008089" /db_xref="GeneID:10102918" /translation="MILVTGGAGYIGSHMCVALAQANEPFLVLDNFGNSRPSVLERIG RITGREPECVRGDVRDAALLQQLFARHEFTAVIHFAALKAVGESVREPLAYYDNNVVG TVTLLQAMRQAGVRQLVFSSSATVYGDPASLPIREDCPLSATNPYGWSKLMMEQVLAD VDASEPGQWRIARLRYFNPVGAHESGLIGEDPQGVPNNLMPYVAQVASGQRELLNVWG SDYPTPDGTGLRDYIHVCDLAEGHVAALRYLREHPGLLTVNLGTGRPVSVLEMVRGFE QASGRPVPYRLAERRPGDVAACWADPGLAERLLGWRATRDVQAMCQDAWRWQDGVART LQPA" misc_feature 949117..950097 /locus_tag="Alide_0889" /note="UDP-glucose 4-epimerase; Region: PLN02240" /db_xref="CDD:177883" misc_feature 949117..950097 /locus_tag="Alide_0889" /note="UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247" /db_xref="CDD:187558" misc_feature order(949129..949131,949135..949146,949201..949218, 949279..949287,949348..949356,949360..949362, 949405..949407,949474..949482,949552..949554, 949564..949566,949639..949644,949648..949650) /locus_tag="Alide_0889" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187558" misc_feature order(949378..949380,949384..949392,949399..949404, 949411..949416,949423..949428,949432..949437, 949444..949446,949549..949551,949558..949560, 949570..949572,949579..949584,949588..949596) /locus_tag="Alide_0889" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187558" misc_feature order(949408..949410,949480..949482,949552..949554, 949564..949566) /locus_tag="Alide_0889" /note="active site" /db_xref="CDD:187558" misc_feature order(949480..949488,949552..949554,949639..949647, 949702..949710,949753..949764,949795..949797, 949801..949803,949807..949809,949915..949917, 949984..949986,949993..949995) /locus_tag="Alide_0889" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187558" gene 950171..950950 /locus_tag="Alide_0890" /db_xref="GeneID:10102919" CDS 950171..950950 /locus_tag="Alide_0890" /inference="protein motif:TFAM:TIGR00735" /note="KEGG: dia:Dtpsy_0738 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein" /codon_start=1 /transl_table=11 /product="imidazoleglycerol phosphate synthase, cyclase subunit" /protein_id="YP_004125543.1" /db_xref="GI:319761606" /db_xref="GO:0000107" /db_xref="InterPro:IPR004651" /db_xref="InterPro:IPR006062" /db_xref="GeneID:10102919" /translation="MLAKRIIPCLDVTGGRVVKGVNFVELRDAGDPVEIAARYNEQGA DELTFLDITATSDGRDLILPIIEAVASQVFIPLTVGGGVRTVADVRRLLNAGADKTSF NSAAIANPDVIDQASGKYGAQCIVVAIDAKRRQGQEVAERGEGWDVYSHGGRKNTGLD AVRWAEEMARRGAGEILLTSMDRDGTKSGFDLQLTRAVSDAVGVPVIASGGVGNLDHL ADGVQQGGADAVLAASIFHYGEFTVRQAKEHMRARGIPVRL" misc_feature 950171..950947 /locus_tag="Alide_0890" /note="Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]; Region: HisF; COG0107" /db_xref="CDD:30456" misc_feature 950180..950929 /locus_tag="Alide_0890" /note="The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-; Region: HisF; cd04731" /db_xref="CDD:73393" misc_feature order(950225..950227,950318..950320,950414..950416, 950477..950482,950552..950554,950558..950560, 950624..950626,950705..950707,950720..950725, 950795..950803,950867..950872) /locus_tag="Alide_0890" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73393" misc_feature order(950288..950290,950303..950305,950369..950371, 950381..950383,950390..950392,950396..950398, 950453..950455,950462..950467,950537..950539, 950693..950695,950777..950779,950852..950854) /locus_tag="Alide_0890" /note="glutamase interaction surface [polypeptide binding]; other site" /db_xref="CDD:73393" gene 951057..951446 /locus_tag="Alide_0891" /db_xref="GeneID:10102920" CDS 951057..951446 /locus_tag="Alide_0891" /EC_number="3.5.4.19" /inference="protein motif:PRIAM:3.5.4.19" /note="KEGG: aav:Aave_1048 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase" /codon_start=1 /transl_table=11 /product="phosphoribosyl-amp cyclohydrolase" /protein_id="YP_004125544.1" /db_xref="GI:319761607" /db_xref="InterPro:IPR002496" /db_xref="GeneID:10102920" /translation="MNWLDQVKWDAQGLVPVIAQEAATGDVLMFAWMDREALQKTAEL GRAVYYSRSRARLWFKGEESGHVQQVHEIRLDCDNDVVLLKVTQLGHEPGIACHTGRH SCFFSVLKDGAWQPVDPVLKDPESIYK" misc_feature 951057..951443 /locus_tag="Alide_0891" /note="Phosphoribosyl-AMP cyclohydrolase; Region: PRA-CH; cl00344" /db_xref="CDD:193779" gene 951451..951828 /locus_tag="Alide_0892" /db_xref="GeneID:10102921" CDS 951451..951828 /locus_tag="Alide_0892" /inference="protein motif:TFAM:TIGR03188" /note="KEGG: dia:Dtpsy_0740 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like" /codon_start=1 /transl_table=11 /product="phosphoribosyl-ATP diphosphatase" /protein_id="YP_004125545.1" /db_xref="GI:319761608" /db_xref="GO:0004636" /db_xref="InterPro:IPR008179" /db_xref="InterPro:IPR021130" /db_xref="GeneID:10102921" /translation="MPSNDSLARLAAVIESRKPANGGDPQASYVARLLHKGPDAFLKK IGEEATEVVMAAKDVDHGAPAAKLVYEVADLWFHSMVALAHYGLAPADVIAELERREG TSGIEEKALRKATGRASEEGGGQ" misc_feature 951457..951789 /locus_tag="Alide_0892" /note="MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345" /db_xref="CDD:193780" gene 951825..952211 /locus_tag="Alide_0893" /db_xref="GeneID:10102922" CDS 951825..952211 /locus_tag="Alide_0893" /inference="similar to AA sequence:KEGG:Dtpsy_0741" /note="KEGG: dia:Dtpsy_0741 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004125546.1" /db_xref="GI:319761609" /db_xref="GeneID:10102922" /translation="MSNDIIDVEPDERAESLKAIGWVSYILHLIVAVGAVMPGAQPGV ALLIVALVIDLVKKSDAEGTWQASHFAWRIRTVLWAGVLYVVTTPLWLLFFFPGWIAW GLISIWFLYRIVRGMVSMNKGQAVDG" misc_feature 951858..952202 /locus_tag="Alide_0893" /note="Predicted membrane protein [Function unknown]; Region: COG3671" /db_xref="CDD:33469" gene 952204..953232 /locus_tag="Alide_0894" /db_xref="GeneID:10102923" CDS 952204..953232 /locus_tag="Alide_0894" /inference="protein motif:PFAM:PF01734" /note="PFAM: Patatin; KEGG: ajs:Ajs_0779 patatin" /codon_start=1 /transl_table=11 /product="patatin" /protein_id="YP_004125547.1" /db_xref="GI:319761610" /db_xref="InterPro:IPR002641" /db_xref="GeneID:10102923" /translation="MAEQAPAPPLNLALQGGGSHGAFTWGVLDALLEDGGFVLEGISG TSAGAMNAVALAHGFAQAALQHKDAAEAHRAGCALARESLTRLWEGVGAMGSLMWGVP LQGNPLLGMMSQWLSPYQTNPLGINPLRGLLERVVDFDALRHAHHAHVPKVFVCATNV RTGRGEIFSGARLSADAVMASACLPLMFKAVPIGGEHYWDGGFSGNPALYPLIYQTQC ADVLLVQINPIEHRDLPDTAQEIMERMNEVTFNASLLGELRAIDFVRRLLAEGRLDPQ HYKSMRMHRIDGGSVLAAFGDASKTRADMGFVRQLFQLGRTEGERWLHRHRRDVGVQH TLHLTDNH" misc_feature 952237..953025 /locus_tag="Alide_0894" /note="Hypothetical patatin similar to Z1214 protein of Escherichia coli; Region: Pat_hypo_Ecoli_Z1214_like; cd07209" /db_xref="CDD:132848" misc_feature order(952252..952257,952261..952263,952339..952341, 952801..952803) /locus_tag="Alide_0894" /note="active site" /db_xref="CDD:132848" misc_feature 952333..952347 /locus_tag="Alide_0894" /note="nucleophile elbow; other site" /db_xref="CDD:132848" gene 953271..953627 /locus_tag="Alide_0895" /db_xref="GeneID:10102924" CDS 953271..953627 /locus_tag="Alide_0895" /inference="protein motif:PFAM:PF01230" /note="PFAM: histidine triad (HIT) protein; KEGG: dia:Dtpsy_0743 histidine triad (HIT) protein" /codon_start=1 /transl_table=11 /product="histidine triad (hit) protein" /protein_id="YP_004125548.1" /db_xref="GI:319761611" /db_xref="InterPro:IPR001310" /db_xref="InterPro:IPR019808" /db_xref="GeneID:10102924" /translation="MHDPNCLFCKIIAGQIPSKKVYEDEQVFAFHDIHPWAPVHFLIV PRLHLHSMAAVTPEHAGLLGHMMALAPKLAMEQGCNPYPDGGFRIVVNTGTEGGQEIH HLHMHVIGGPRPWLRG" misc_feature 953283..953603 /locus_tag="Alide_0895" /note="Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276" /db_xref="CDD:29589" misc_feature order(953358..953360,953364..953369,953388..953390, 953394..953396,953544..953546,953565..953567, 953571..953573,953583..953585,953589..953591) /locus_tag="Alide_0895" /note="nucleotide binding site/active site [active]" /db_xref="CDD:29589" misc_feature order(953577..953579,953583..953585,953589..953597) /locus_tag="Alide_0895" /note="HIT family signature motif; other site" /db_xref="CDD:29589" misc_feature 953583..953585 /locus_tag="Alide_0895" /note="catalytic residue [active]" /db_xref="CDD:29589" gene 953728..953976 /locus_tag="Alide_0896" /db_xref="GeneID:10102925" CDS 953728..953976 /locus_tag="Alide_0896" /inference="protein motif:TFAM:TIGR01411" /note="KEGG: ajs:Ajs_0781 twin arginine translocase protein A; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106" /codon_start=1 /transl_table=11 /product="twin-arginine translocation protein, tata/e family subunit" /protein_id="YP_004125549.1" /db_xref="GI:319761612" /db_xref="GO:0008565" /db_xref="InterPro:IPR003369" /db_xref="InterPro:IPR006312" /db_xref="GeneID:10102925" /translation="MGSFSIWHWLIVLLIVVMVFGTKKLKNIGSDLGSAVKGFKDGMK DGASGDDQQAQAGAPAGQVTNGQTADKTTIDVEAKQKS" misc_feature 953728..953973 /locus_tag="Alide_0896" /note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788" /db_xref="CDD:189129" gene 954002..954481 /locus_tag="Alide_0897" /db_xref="GeneID:10102926" CDS 954002..954481 /locus_tag="Alide_0897" /inference="protein motif:TFAM:TIGR01410" /note="KEGG: dia:Dtpsy_0745 sec-independent translocase; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106" /codon_start=1 /transl_table=11 /product="twin-arginine translocation protein, tatb subunit" /protein_id="YP_004125550.1" /db_xref="GI:319761613" /db_xref="InterPro:IPR003369" /db_xref="InterPro:IPR003998" /db_xref="InterPro:IPR018448" /db_xref="GeneID:10102926" /translation="MIDIGLSKMALIGAVALIVIGPEKLPRVARTVGTLLGKAQRYVA DVKAEVNRSMELDELKKMKDEVESAARDVEQSIQTGASDLQKDMEQSLGGYGAASEAA GSSPDLSTVVPAYRHPGKNWRLKRAAVPQWYKARAGVRTKAQSGAARVARFRPQKFH" misc_feature 954002..954478 /locus_tag="Alide_0897" /note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788" /db_xref="CDD:189129" gene 954547..955335 /locus_tag="Alide_0898" /db_xref="GeneID:10102927" CDS 954547..955335 /locus_tag="Alide_0898" /inference="protein motif:TFAM:TIGR00945" /note="KEGG: dia:Dtpsy_0746 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase" /codon_start=1 /transl_table=11 /product="sec-independent protein translocase, tatc subunit" /protein_id="YP_004125551.1" /db_xref="GI:319761614" /db_xref="InterPro:IPR002033" /db_xref="InterPro:IPR019822" /db_xref="GeneID:10102927" /translation="MSETQNKEDELAGTEQPFVQHLMELRDRLVKAMIAIGVVAAVLF FYPGPGQLYDLLAAPLVAHLPQGATMIATSVISPFMVPLKILLMTAFLIALPFVLWQV WAFVAPGLYSHEKRLVLPLVISSTVLFFIGVAFCYFFVFGQVFSFIQGFAPKSITAAP DIEAYLGFVLTMFLAFGLAFEVPIAVVVLARLGLVSVDKLKSFRGYFIVAAFVIAAIV TPPDVVSQLALAVPMCLLYEIGIWAAQLFIRNTQAPEDTQESAS" misc_feature 954592..955326 /locus_tag="Alide_0898" /note="Sec-independent protein translocase protein (TatC); Region: TatC; cl00521" /db_xref="CDD:193851" gene complement(955409..956548) /locus_tag="Alide_0899" /db_xref="GeneID:10102928" CDS complement(955409..956548) /locus_tag="Alide_0899" /EC_number="3.4.21.108" /inference="protein motif:PRIAM:3.4.21.108" /note="PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein" /codon_start=1 /transl_table=11 /product="htra2 peptidase" /protein_id="YP_004125552.1" /db_xref="GI:319761615" /db_xref="InterPro:IPR001254" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR001940" /db_xref="GeneID:10102928" /translation="MKRYWLLFSQAVTVLLAAYFVVTTLQPGWLQRGPATSGTGISLI EAPPSSGSQPAAGSFSTAARKAAPAVVSINTSKEVRHPRSDDPWFQFFFGDQGPQAQT GLGSGVIISPDGYILTNNHVVEGADEIEVTLTDSRRARATVIGTDPETDLAVLKVQLD KLPVIVLGDSDKLAVGDQVLAIGNPFGVGQTVTSGIVSALGRTHLGINTFENFIQTDA AINPGNSGGALVDVNGNLMGINTAIYSRSGGSMGIGFAIPVSTAKQVLEGIVRDGQVT RGWIGVEPNELSPELAQTFGVKATEGVIITGVLQGGPAAQAGIRPGDVILKVAGKSTD NVSQLLTAVAALQPGQAASFELQRGDTQIKVSVVPGTRPRVQQRR" misc_feature complement(955760..956230) /locus_tag="Alide_0899" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" misc_feature complement(955448..955717) /locus_tag="Alide_0899" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature complement(order(955529..955534,955541..955546, 955697..955699,955703..955714)) /locus_tag="Alide_0899" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" gene 956639..957391 /locus_tag="Alide_0900" /db_xref="GeneID:10102929" CDS 956639..957391 /locus_tag="Alide_0900" /inference="protein motif:PFAM:PF01784" /note="PFAM: protein of unknown function DUF34; KEGG: dia:Dtpsy_0749 protein of unknown function DUF34" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125553.1" /db_xref="GI:319761616" /db_xref="InterPro:IPR002678" /db_xref="GeneID:10102929" /translation="MSIQRHDLLAHFDALLQPERFKDYGPNGLQVEGRGEIARIVSGV TASRALIDAAIAARADAIFVHHGLFWRGMDGRVTGWMKERLQRLLAHDINLFAYHLPL DAHAELGNNAQLGCVLGWQADQRFGEQELGFAAPAAFADAADLAAHVRAALGRSVTLV APEGERPIRRVAWCTGGAQGFFESAIAAGADAFITGEISEPQTHLARETGVAFIAAGH HATERYGPPAVAAHAARQLGLEHQFIDIDNPA" misc_feature 956645..957388 /locus_tag="Alide_0900" /note="Uncharacterized conserved protein [Function unknown]; Region: COG0327" /db_xref="CDD:30675" misc_feature 956699..957388 /locus_tag="Alide_0900" /note="NIF3 (NGG1p interacting factor 3); Region: NIF3; cl01309" /db_xref="CDD:194097" gene 957454..958506 /locus_tag="Alide_0901" /db_xref="GeneID:10102930" CDS 957454..958506 /locus_tag="Alide_0901" /EC_number="1.1.1.262" /inference="protein motif:TFAM:TIGR00557" /note="TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase" /protein_id="YP_004125554.1" /db_xref="GI:319761617" /db_xref="GO:0050570" /db_xref="GO:0051287" /db_xref="InterPro:IPR005255" /db_xref="GeneID:10102930" /translation="MNSTTNAPLPLAITQGDPAGIGPEIVAKAFRDAPQDLRGCFVVG DLATLRRAAACIERPGQASLPVALLDSPDAWAQVPPRCLPVWQLHELAGSLAPWGQVS AEAGHAAAVCVVWAARAALRGEIAGLVTAPLHKEALAAAGVHYPGHTELLQAEAAHHA GVPVAQMPVRMMLASDELRTVLVSIHVSLRDAIAAVTQDNVLQTLCITHAALSRSLGR APRIAVAGLNPHAGEGGLFGTEEREIIAPAIAQARAQGIDARGPYAPDTVFMRARSTA GRTGEFDVVVAMYHDQGLIPVKYLGVDKGVNVTLGLPLVRTSPDHGTAFDIAGQGVAD ASSLIEAVRMARRLAW" misc_feature 957481..958500 /locus_tag="Alide_0901" /note="Pyridoxal phosphate biosynthetic protein PdxA; Region: PdxA; cl00873" /db_xref="CDD:186232" misc_feature 957484..958500 /locus_tag="Alide_0901" /note="4-hydroxythreonine-4-phosphate dehydrogenase; Validated; Region: pdxA; PRK03743" /db_xref="CDD:179641" gene complement(958573..959001) /locus_tag="Alide_0902" /db_xref="GeneID:10102931" CDS complement(958573..959001) /locus_tag="Alide_0902" /inference="protein motif:TFAM:TIGR00220" /note="KEGG: dac:Daci_5504 large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel" /codon_start=1 /transl_table=11 /product="large conductance mechanosensitive channel protein" /protein_id="YP_004125555.1" /db_xref="GI:319761618" /db_xref="GO:0005216" /db_xref="InterPro:IPR001185" /db_xref="InterPro:IPR019823" /db_xref="GeneID:10102931" /translation="MSLAKEFREFAIKGNVIDLAVGVIIGAAFGKIVDSVVADLIMPV VGLVFGKLDFSNLFIVLGSVPEGTARTLDALKKAGVPVFAYGNFITVAVNFLILAFII FMMIKQFNRLKREAPAEPAPEAVTPEDIVLLREIRDSLKR" misc_feature complement(958576..959001) /locus_tag="Alide_0902" /note="Large-conductance mechanosensitive channel, MscL; Region: MscL; cl00860" /db_xref="CDD:186226" gene 959127..959726 /locus_tag="Alide_0903" /db_xref="GeneID:10102932" CDS 959127..959726 /locus_tag="Alide_0903" /EC_number="1.10.2.2" /inference="protein motif:TFAM:TIGR01416" /note="TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal" /codon_start=1 /transl_table=11 /product="ubiquinol-cytochrome c reductase, iron-sulfur subunit" /protein_id="YP_004125556.1" /db_xref="GI:319761619" /db_xref="GO:0008121" /db_xref="InterPro:IPR005805" /db_xref="InterPro:IPR006317" /db_xref="InterPro:IPR017909" /db_xref="InterPro:IPR017941" /db_xref="InterPro:IPR019470" /db_xref="GeneID:10102932" /translation="MSQTPVDSSKRTWLIASSCAGAVGGVATAVPFVSAFQPSEKAKA AGAAVEVDISGLKPDEKLTVEWRGKPVWIIRRSKEQLAELPKLDSQLADPESKRHPDE FTPAYARNEWRSIKPEILVVVGICTHLGCSPVDKFIPGPQPSLPSDWQGGFLCPCHGS TFDMAGRVFKNKPAPDNLEVPPHMYLSDTRLLIGEDKKA" sig_peptide 959127..959216 /locus_tag="Alide_0903" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.967) with cleavage site probability 0.823 at residue 30" misc_feature 959151..959708 /locus_tag="Alide_0903" /note="ubiquinol-cytochrome c reductase, iron-sulfur subunit; Region: Rieske_proteo; TIGR01416" /db_xref="CDD:188138" misc_feature 959280..959708 /locus_tag="Alide_0903" /note="Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including...; Region: Rieske_cytochrome_bc1; cd03470" /db_xref="CDD:58540" misc_feature order(959502..959504,959508..959513,959589..959591, 959598..959600,959604..959606) /locus_tag="Alide_0903" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:58540" gene 959742..961163 /locus_tag="Alide_0904" /db_xref="GeneID:10102933" CDS 959742..961163 /locus_tag="Alide_0904" /inference="protein motif:PFAM:PF00033" /note="PFAM: Cytochrome b/b6 domain; KEGG: dia:Dtpsy_0753 cytochrome b/b6 domain protein" /codon_start=1 /transl_table=11 /product="cytochrome b/b6 domain protein" /protein_id="YP_004125557.1" /db_xref="GI:319761620" /db_xref="GO:0009055" /db_xref="GO:0016491" /db_xref="InterPro:IPR005797" /db_xref="InterPro:IPR005798" /db_xref="GeneID:10102933" /translation="MAAYREFKEISPNASAGAKLTNWLENRFPTAFDAYKVHMSEYYA PKNFNFWYIFGSLALLVLVIQIVTGIFLVMNYKPDAAKAFESVEYIMRDVPWGWLIRY MHSTGASAFFIVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLALMAEAFMGYLLPWGQ MSYWGAQVIVNLFSAIPFVGPDLALLIRGDYVVGDATLNRFFSFHVIAVPLVLLGLVV AHLLALHDVGSNNPDGIEIKGPGKPVDDKGHPLDGVPFHPYYTVHDIFGVSIFLFIFS AVIFFAPEFGGYFLEYNNFIPADPLKTPNHIAPVWYFTPFYSMLRAITSEMMYALIAC VVLGAGYGVLKAKLPGFIKGGIVVGAAVVIALMLSIDAKFWGVVVMGGAVIILFFLPW LDCSPARSIRYRPGWHKWLYAIFVVWFVVLAYLGTQAPSPVGERVSQVGTLFYFGFFL LMPWWTRLGTPKPVPDRVTFKSH" misc_feature 959835..960356 /locus_tag="Alide_0904" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cd00284" /db_xref="CDD:29347" misc_feature order(959853..959858,959907..959909,959916..959918) /locus_tag="Alide_0904" /note="Qi binding site; other site" /db_xref="CDD:29347" misc_feature order(959856..959861,959871..959879,959895..959900, 959907..959912,959919..959921,959991..959993, 960036..960038,960045..960050,960057..960062, 960066..960071,960075..960080,960087..960089, 960108..960125,960135..960140,960147..960152, 960159..960161,960168..960173,960201..960203, 960213..960233,960243..960248,960270..960272) /locus_tag="Alide_0904" /note="intrachain domain interface; other site" /db_xref="CDD:29347" misc_feature order(959859..959864,959868..959870,959877..959879, 959940..959942,959952..959954,959961..959966, 959991..959996,960003..960008,960015..960029, 960033..960041,960048..960050,960132..960134) /locus_tag="Alide_0904" /note="interchain domain interface [polypeptide binding]; other site" /db_xref="CDD:29347" misc_feature 959871..961100 /locus_tag="Alide_0904" /note="cytochrome b; Provisional; Region: CYTB; MTH00145" /db_xref="CDD:177203" misc_feature order(959895..959897,959904..959909,959913..959918, 960072..960074,960084..960086,960093..960098, 960102..960104,960144..960149,960156..960161, 960165..960170) /locus_tag="Alide_0904" /note="heme bH binding site [chemical binding]; other site" /db_xref="CDD:29347" misc_feature order(959925..959927,959934..959939,959946..959951, 959955..959960,959967..959969,960000..960002, 960042..960044,960051..960056,960063..960065, 960186..960191,960198..960203,960207..960212, 960354..960356) /locus_tag="Alide_0904" /note="heme bL binding site [chemical binding]; other site" /db_xref="CDD:29347" misc_feature order(960171..960173,960180..960185,960192..960197, 960234..960236,960243..960248,960258..960260, 960342..960344,960351..960353) /locus_tag="Alide_0904" /note="Qo binding site; other site" /db_xref="CDD:29347" misc_feature 960492..961028 /locus_tag="Alide_0904" /note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: cytochrome_b_C; cl00193" /db_xref="CDD:185816" misc_feature order(960492..960506,960513..960521,960525..960530, 960537..960539,960546..960551,960558..960560, 960567..960572,960579..960584,960588..960590, 960615..960617,960624..960629,960930..960935, 960948..960953) /locus_tag="Alide_0904" /note="interchain domain interface [polypeptide binding]; other site" /db_xref="CDD:29371" misc_feature order(960495..960503,960507..960509,960519..960521, 960528..960533,960540..960545,960552..960554, 960564..960569,960573..960581,960588..960590, 960612..960614,960618..960623,960627..960641, 960645..960653,960660..960662,960666..960677, 960861..960863,960891..960893,960900..960905, 960909..960917,960921..960923) /locus_tag="Alide_0904" /note="intrachain domain interface; other site" /db_xref="CDD:29371" misc_feature order(960507..960509,960531..960533) /locus_tag="Alide_0904" /note="Qi binding site; other site" /db_xref="CDD:29371" misc_feature order(960660..960662,960666..960671,960678..960680, 960687..960692,960879..960881) /locus_tag="Alide_0904" /note="Qo binding site; other site" /db_xref="CDD:29371" gene 961180..961935 /locus_tag="Alide_0905" /db_xref="GeneID:10102934" CDS 961180..961935 /locus_tag="Alide_0905" /inference="protein motif:PFAM:PF02167" /note="KEGG: ajs:Ajs_0791 cytochrome c1; manually curated; PFAM: cytochrome c1" /codon_start=1 /transl_table=11 /product="cytochrome c1" /protein_id="YP_004125558.1" /db_xref="GI:319761621" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR002326" /db_xref="InterPro:IPR009056" /db_xref="GeneID:10102934" /translation="MKKLILTLVAALGLVAGAHASGGGMAWDKAPVNTTDTASLQNGA KLFVNYCLNCHSAAFMRFNRLKDIGLTDQQIKDNLLFTTDKIGETMKSTIDPKQAAAW FGTNPPDLTVIARSRAGSGGTGADYLYTFLRTFYRDDTKATGWNNLAFPNVGMPHALW QLQDDRRAIFEERESHGQTEHVFKGWERVAPGAMTDQQYDQAVGDLVNYLQWMGEPAQ NTRIRVGVWVLLFLAGFTFIAWRLNAAYWKDIK" sig_peptide 961180..961242 /locus_tag="Alide_0905" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.827 at residue 21" misc_feature 961258..961929 /locus_tag="Alide_0905" /note="Cytochrome C1 family; Region: Cytochrom_C1; pfam02167" /db_xref="CDD:190231" gene 962034..962645 /locus_tag="Alide_0906" /db_xref="GeneID:10102935" CDS 962034..962645 /locus_tag="Alide_0906" /inference="protein motif:PFAM:PF02798" /note="PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_0755 glutathione S-transferase domain protein" /codon_start=1 /transl_table=11 /product="glutathione s-transferase domain protein" /protein_id="YP_004125559.1" /db_xref="GI:319761622" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="InterPro:IPR017933" /db_xref="GeneID:10102935" /translation="MMVLYSGTTCPFSHRCRFVLFEKGMDFEIRDVDLYNKPEDISVM NPYGQVPILVERDLILYESNIINEYIDERFPHPQLMPGDPVDRARVRLFLLNFEKELF VHVNTLESRATKGNEKALEKARAHIRDRLTQLAPVFLKNKYMLGEGFSMLDVAIAPLL WRLDYYGIELSKNAAPLLKYAERIFSRPAYIEALTPSEKVMRK" misc_feature 962037..962639 /locus_tag="Alide_0906" /note="stringent starvation protein A; Provisional; Region: sspA; PRK09481" /db_xref="CDD:181895" misc_feature 962037..962255 /locus_tag="Alide_0906" /note="GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival...; Region: GST_N_SspA; cd03059" /db_xref="CDD:48608" misc_feature order(962055..962060,962067..962069,962073..962078, 962082..962087,962094..962099,962223..962225, 962232..962237) /locus_tag="Alide_0906" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48608" misc_feature order(962067..962069,962178..962186,962217..962222) /locus_tag="Alide_0906" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48608" misc_feature order(962172..962174,962205..962210,962223..962225, 962235..962237,962247..962249) /locus_tag="Alide_0906" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48608" misc_feature 962283..962615 /locus_tag="Alide_0906" /note="GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival...; Region: GST_C_SspA; cd03186" /db_xref="CDD:48113" misc_feature order(962292..962294,962298..962300,962304..962309, 962319..962321,962331..962333) /locus_tag="Alide_0906" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48113" misc_feature order(962304..962306,962337..962339,962493..962498, 962505..962507,962517..962519,962592..962594, 962598..962600,962610..962612) /locus_tag="Alide_0906" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48113" gene 962678..963202 /locus_tag="Alide_0907" /db_xref="GeneID:10102936" CDS 962678..963202 /locus_tag="Alide_0907" /inference="protein motif:PFAM:PF04386" /note="PFAM: Stringent starvation protein B; KEGG: dia:Dtpsy_0756 stringent starvation protein B" /codon_start=1 /transl_table=11 /product="stringent starvation protein b" /protein_id="YP_004125560.1" /db_xref="GI:319761623" /db_xref="InterPro:IPR007481" /db_xref="GeneID:10102936" /translation="MMNAQDSPSTRPYLIRALYEWCTDNGFTPYLVVRVNDSVQVPRD YVNNGEIVLNVSYEATSGLQLGNDFIEFKARFGGKPCDLLIPVHRVIAIYARENGQGM AFPLDEEGGEKADVAPPRPAGVVAAPPAGAERAPVQLQSIDGSAGEGADKDAPHPPPQ TPGGGRRPSLKRIK" misc_feature 962702..963022 /locus_tag="Alide_0907" /note="Stringent starvation protein B; Region: SspB; cl01120" /db_xref="CDD:194042" gene 963264..963339 /locus_tag="Alide_R0007" /note="tRNA-Thr2" /db_xref="GeneID:10102937" tRNA 963264..963339 /locus_tag="Alide_R0007" /product="tRNA-Thr" /db_xref="GeneID:10102937" gene complement(963385..963684) /locus_tag="Alide_0908" /db_xref="GeneID:10102938" CDS complement(963385..963684) /locus_tag="Alide_0908" /inference="similar to AA sequence:KEGG:Dtpsy_0757" /note="KEGG: dia:Dtpsy_0757 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125561.1" /db_xref="GI:319761624" /db_xref="GeneID:10102938" /translation="MNRRHYAISLHQATQESPTLARLTALTRDSSERLKAIDALIPPM LRPAIQAGPIEGDCWCLLVSSNAAAAKVRQLLPAFQAHLRSRGWEVASIRLKIQR" gene 963926..966685 /locus_tag="Alide_0909" /db_xref="GeneID:10102939" CDS 963926..966685 /locus_tag="Alide_0909" /inference="protein motif:TFAM:TIGR00963" /note="KEGG: dia:Dtpsy_0759 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein" /codon_start=1 /transl_table=11 /product="preprotein translocase, seca subunit" /protein_id="YP_004125562.1" /db_xref="GI:319761625" /db_xref="GO:0005524" /db_xref="InterPro:IPR000185" /db_xref="InterPro:IPR004027" /db_xref="InterPro:IPR011115" /db_xref="InterPro:IPR011116" /db_xref="InterPro:IPR011130" /db_xref="InterPro:IPR014018" /db_xref="InterPro:IPR020937" /db_xref="GeneID:10102939" /translation="MATNFLTKLFGSRNDRLLKQYRKTVARINAIEPEYEKLSDEALR SKTQEFKDRIAKGESLDAILPEAFAVVREGSKRVMKMRHFDVQLLGGMALHHGKIAEM RTGEGKTLTATLPVYLNALSGKGVHVVTVNDYLAGRDAQWMGRLYNFLGLTVGVNLPQ MPREEKQAAYGADITYGTNNEYGFDYLRDNMVYDSRERVQRGLNYAIVDEVDSILIDE ARTPLIISGQAEDHTAMYVAMNKVVPLLTRQEGEADPRTGEGVIKPGDFTVDEKTHQV FLTEQGHENAERILVSQGLIPEGASLYDPANISLVHHLYAALRANHLYHRDQHYVVQN GEIVIVDEFTGRLMAGRRWSEGLHQAVEAKEGVQIQAENQTLASITFQNYFRLYGKLA GMTGTADTEAYEFQEIYGLETVVIPPNRPSRRDDQLDRVYKTTREKYEAAIADIRECH ERGQPVLVGTTSIENSEIIDELLNKVGLPHQVLNAKQHAREADIVAQAGRPGMITIAT NMAGRGTDIVLGGNVEKAVAALEADESLAPEQREAQIEALRAQWKVDHDKVTALGGLR IIATERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLMRIFAGDRVKAIMDRLKMP DGEAIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDVANDQRKVIYQQRNEILDAPD LSALIAAMRDDCLTDVVRQHVPAESVEEQWDLAGLEKTLASDWQVQLALQQEVQGSDA ITDEEILEKVLQAAREAFEAKVAQVGAENFTQFERMVLLQSFDTNWRDHLSALDYLRQ GIHLRGYAQKQPKQEYKREAFELFRQLIDQVKNEVTRLMMTVQLQSNAQLDEATQAME ERGEGISNVTYTSPTETGEVETLVDAQTARAKQAAVPGVRVGRNDPCPCGSGKKYKQC HGKLA" misc_feature 963932..966454 /locus_tag="Alide_0909" /note="preprotein translocase subunit SecA; Reviewed; Region: PRK12904" /db_xref="CDD:183826" misc_feature 964607..965011 /locus_tag="Alide_0909" /note="SecA preprotein cross-linking domain; Region: SecA_PP_bind; pfam01043" /db_xref="CDD:144583" misc_feature 965213..>965476 /locus_tag="Alide_0909" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(965306..965317,965375..965380,965447..965455) /locus_tag="Alide_0909" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature <966572..966667 /locus_tag="Alide_0909" /note="hypothetical protein; Provisional; Region: PRK10396" /db_xref="CDD:182427" misc_feature 966620..966679 /locus_tag="Alide_0909" /note="SEC-C motif; Region: SEC-C; cl12132" /db_xref="CDD:196349" gene 966761..967990 /locus_tag="Alide_0910" /db_xref="GeneID:10102940" CDS 966761..967990 /locus_tag="Alide_0910" /EC_number="2.3.1.1" /inference="protein motif:TFAM:TIGR00120" /note="TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: ajs:Ajs_0797 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ" /codon_start=1 /transl_table=11 /product="arginine biosynthesis bifunctional protein argj" /protein_id="YP_004125563.1" /db_xref="GI:319761626" /db_xref="GO:0004358" /db_xref="InterPro:IPR002813" /db_xref="GeneID:10102940" /translation="MPVNLSAPQAADLHPVAGVRIGVAEAGVRKANRKDLTVFLLDEG TTVAGVFTQNRFCAAPVQVCREHLDGGQAIRAMVVNTGNANAGTGSDGLARARATCEA LAGQLGLAASQVLPFSTGVIMEPLPVERITAALPAALADAQPAHWARAAEGIMTTDTV PKAFGTQVQIGGATVSVTGISKGAGMIRPNMATMLGFLATDACIAPDLVRDLVRDLAE QSFNRITIDGDTSTNDSFVLVATHKAAHAPITSLESSEGRALRAALLQVAQQLAQAIV RDGEGATKFITVRVEGGRTTGECRQVAYAIAHSPLVKTAFFASDPNLGRILAAVGYAG IADLDQTLIDLYLDDVHVAVQGGRNPQYREEDGQRVMKQQEITVRVVLGRGDAQDTVW TCDLSHDYVTINADYRS" misc_feature 966806..967987 /locus_tag="Alide_0910" /note="Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group...; Region: OAT; cd02152" /db_xref="CDD:73147" misc_feature order(966917..966931,967019..967021,967124..967129, 967316..967318,967328..967330,967439..967450, 967685..967693,967700..967705,967709..967714, 967718..967720,967724..967735,967739..967744, 967751..967762,967820..967822,967946..967954) /locus_tag="Alide_0910" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:73147" misc_feature order(967115..967120,967226..967231,967304..967306, 967313..967315,967337..967339,967970..967972, 967982..967987) /locus_tag="Alide_0910" /note="active site pocket [active]" /db_xref="CDD:73147" misc_feature 967334..967339 /locus_tag="Alide_0910" /note="cleavage site" /db_xref="CDD:73147" gene 968045..968917 /locus_tag="Alide_0911" /db_xref="GeneID:10102941" CDS 968045..968917 /locus_tag="Alide_0911" /inference="protein motif:PFAM:PF05673" /note="PFAM: protein of unknown function DUF815; KEGG: dia:Dtpsy_0761 protein of unknown function DUF815" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125564.1" /db_xref="GI:319761627" /db_xref="InterPro:IPR008533" /db_xref="GeneID:10102941" /translation="MTDRFDQLIARAEQLISRIEAVLPRPLSAPDWSAAIAWRYRRRS GGHGVLEPVRHVAGMRLSDLKEIDAQKEKIQRNTQQFVDGRPANNVLLTGARGTGKSS LIKACLNSYAPQGLRLIEVDKADLTDLPDIVEVVSGRPEKFIIYCDDLSFEEGEGGYK ALKSILDGSVAASTPNVLVYATSNRRHLLPEQMKDNLSYTTAPDGEIHPGEVVEEKIS LSERFGLWVSFYPFSQDEYLAIVAQWLSALGVGSQDIEAARPQALVWALERGSRSGRV AYQFARDFAGRQGA" misc_feature 968060..968911 /locus_tag="Alide_0911" /note="Predicted ATPase (AAA+ superfamily) [General function prediction only]; Region: COG2607" /db_xref="CDD:32599" misc_feature 968141..968908 /locus_tag="Alide_0911" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 968914..969339 /locus_tag="Alide_0912" /db_xref="GeneID:10102942" CDS 968914..969339 /locus_tag="Alide_0912" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_0762 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="nudix hydrolase" /protein_id="YP_004125565.1" /db_xref="GI:319761628" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR020084" /db_xref="InterPro:IPR020476" /db_xref="GeneID:10102942" /translation="MTRKHTEVAVGILLRQDGALLLSTRPEGKPYAGYWEFPGGKIEA GETVEQALRRELIEELGVTIGPAEVWKVTEHDYPHALVRLHWCKVHEWSGEFEMREGQ AMLWQQWPVQVRPVLPGAYPVLQWLAEERGETFDPSALD" misc_feature 968932..969234 /locus_tag="Alide_0912" /note="The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic...; Region: MutT_pyrophosphohydrolase; cd03425" /db_xref="CDD:72883" misc_feature order(968935..968937,969031..969036,969040..969042, 969076..969078,969085..969090,969157..969159, 969211..969213) /locus_tag="Alide_0912" /note="active site" /db_xref="CDD:72883" misc_feature order(968935..968937,969031..969036,969151..969153, 969157..969159) /locus_tag="Alide_0912" /note="8-oxo-dGMP binding site [chemical binding]; other site" /db_xref="CDD:72883" misc_feature 969031..969099 /locus_tag="Alide_0912" /note="nudix motif; other site" /db_xref="CDD:72883" misc_feature order(969076..969078,969085..969090) /locus_tag="Alide_0912" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:72883" gene complement(969402..969608) /locus_tag="Alide_0913" /db_xref="GeneID:10102943" CDS complement(969402..969608) /locus_tag="Alide_0913" /inference="protein motif:PFAM:PF03884" /note="PFAM: protein of unknown function DUF329; KEGG: dia:Dtpsy_0763 protein of unknown function DUF329" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125566.1" /db_xref="GI:319761629" /db_xref="GO:0008270" /db_xref="InterPro:IPR005584" /db_xref="GeneID:10102943" /translation="MNSPANPRTVPCPTCGGPSLYGPANPFRPFCSERCKQIDLGAWA NEDFRVPAESPPEDAEYGDPKRLP" misc_feature complement(969417..969587) /locus_tag="Alide_0913" /note="Domain of unknown function (DUF329); Region: DUF329; cl01144" /db_xref="CDD:194050" gene complement(969610..970365) /locus_tag="Alide_0914" /db_xref="GeneID:10102944" CDS complement(969610..970365) /locus_tag="Alide_0914" /inference="protein motif:PFAM:PF07072" /note="PFAM: protein of unknown function DUF1342; KEGG: dia:Dtpsy_0764 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125567.1" /db_xref="GI:319761630" /db_xref="InterPro:IPR009777" /db_xref="GeneID:10102944" /translation="MILYEYPFNERLRTYLRLEQLFQRLGELIARTHPLDHHYALVTM FEVMDVAARADLKADVLKDLEKHKHQLDAYRGNPSISETVLDGVITQLDQCFAALNAQ SGKAGHALTENDWLMSIRSRVGIPGGTCGFDLPAYYAWQHHAPQARQHDLQDWAATLA PLAESVYLLLRLMRDSGLPQKVAAERGQFQQNLPQGRTFQLLRLRIDPALELIPEISG NRLIVSVRLMRQEEGGKLVPSNEDAAFELTLCA" misc_feature complement(969613..970365) /locus_tag="Alide_0914" /note="Protein of unknown function (DUF1342); Region: DUF1342; cl01892" /db_xref="CDD:186493" gene complement(970448..971062) /locus_tag="Alide_0915" /db_xref="GeneID:10102945" CDS complement(970448..971062) /locus_tag="Alide_0915" /EC_number="2.7.1.24" /inference="protein motif:TFAM:TIGR00152" /note="TIGRFAM: dephospho-CoA kinase; KEGG: ajs:Ajs_0802 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase" /codon_start=1 /transl_table=11 /product="dephospho-CoA kinase" /protein_id="YP_004125568.1" /db_xref="GI:319761631" /db_xref="GO:0004140" /db_xref="GO:0005524" /db_xref="InterPro:IPR001977" /db_xref="GeneID:10102945" /translation="MTTRRPIRLGVTGGIGSGKSTFAAMLQACGAALIDADGIARSVT QPDGAAIAAIRARFGPDYIDAQGALDRARMRALVFADAGAKERLEAIVHPLVGSAIAQ AAAAAGQACHRLIVFDIPLLTESGRWPRELDAVLVVDCREDTQVARVQARSGLAEDAV RAIIATQSSRATRRAAADFVVYNDGLALSDLQTMAHRVAASFGL" misc_feature complement(970508..971041) /locus_tag="Alide_0915" /note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022" /db_xref="CDD:30195" misc_feature complement(order(970562..970564,970700..970705, 970784..970786,970952..970954,971027..971029)) /locus_tag="Alide_0915" /note="CoA-binding site [chemical binding]; other site" /db_xref="CDD:30195" misc_feature complement(order(970514..970516,970619..970621, 971006..971011,971018..971026)) /locus_tag="Alide_0915" /note="ATP-binding [chemical binding]; other site" /db_xref="CDD:30195" gene complement(971083..971961) /locus_tag="Alide_0916" /db_xref="GeneID:10102946" CDS complement(971083..971961) /locus_tag="Alide_0916" /EC_number="3.4.23.43" /inference="protein motif:PRIAM:3.4.23.43" /note="KEGG: dia:Dtpsy_0766 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV" /codon_start=1 /transl_table=11 /product="prepilin peptidase" /protein_id="YP_004125569.1" /db_xref="GI:319761632" /db_xref="InterPro:IPR000045" /db_xref="InterPro:IPR010627" /db_xref="InterPro:IPR014032" /db_xref="GeneID:10102946" /translation="MTGSAFADAVLVGVLGLLIGSFLNVVIHRLPRMMERQWAAECAQ YAEDAGLPTQGGAAPTEQPFNLLTPRSRCPSCGHEVRWYENIPVLSYLALRGRCSGCG TRIGVRYPLVELATAALFYACALRWGWSFTTLAWCGFCAALVALALIDWDTTLLPDDI TLPLLWAGLLASVLRWIDVQPVDAVIGAAAGYVSLWLVYWGFKLATGKEGMGYGDFKL FAALGAWFGWQALVPIVLMASVIGALVGIAMKFASSLREGKYVPFGPFLAGGGLAAML WGPARIMRAIFSTLGL" misc_feature complement(971575..971901) /locus_tag="Alide_0916" /note="Bacterial Peptidase A24 N-terminal domain; Region: DiS_P_DiS; pfam06750" /db_xref="CDD:191601" misc_feature complement(971221..>971454) /locus_tag="Alide_0916" /note="Type IV leader peptidase family; Region: Peptidase_A24; cl02077" /db_xref="CDD:154734" gene complement(971961..973178) /locus_tag="Alide_0917" /db_xref="GeneID:10102947" CDS complement(971961..973178) /locus_tag="Alide_0917" /inference="protein motif:PFAM:PF00482" /note="PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein" /codon_start=1 /transl_table=11 /product="type ii secretion system f domain protein" /protein_id="YP_004125570.1" /db_xref="GI:319761633" /db_xref="InterPro:IPR003004" /db_xref="InterPro:IPR018076" /db_xref="GeneID:10102947" /translation="MATIASRDIKDFVFEWEGKDRSGKVVRGEVRASGENQVKATLRR QGVLPTKIKKRRASGGKKIKPKDIALFTRQMATMMKAGVPLLQSFDIVGRGNTNASVT KLLNDIRADVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT EAIKSKIRSALMYPISVLVVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMAIS EFFVAYWWLIFGAIGGGFYFFMQAWKRSEKMQRTMDRFLLKMPIFGALIEKSCVARWT RTLSTMFAAGVPLVEALDSVGGASGNSVYAVATDRIQQEVSTGTSLTAAMGNANVFPS MVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVV SMYLPIFKLGQVV" misc_feature complement(971964..973142) /locus_tag="Alide_0917" /note="Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulF; COG1459" /db_xref="CDD:31648" misc_feature complement(972657..972968) /locus_tag="Alide_0917" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" misc_feature complement(971988..972356) /locus_tag="Alide_0917" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene complement(973200..974939) /locus_tag="Alide_0918" /db_xref="GeneID:10102948" CDS complement(973200..974939) /locus_tag="Alide_0918" /inference="protein motif:TFAM:TIGR02538" /note="TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="type iv-a pilus assembly atpase pilb" /protein_id="YP_004125571.1" /db_xref="GI:319761634" /db_xref="GO:0005524" /db_xref="GO:0008565" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR007831" /db_xref="InterPro:IPR013374" /db_xref="GeneID:10102948" /translation="MASADIAQKVAQPVALPGLARALMSVGKLDQKTAEEIYKKSQTT RTSFIAELTESNAITSSDLAHTVSSIFGAPLVDVEALDRQRLPKDLLDFKLCQAYRVV PLGKRSNRLIVATADPTNQEAAEKIKFTTQMGVDWIVAEYHKLIQLVDATAKSGSETL DSIVNSGDFEFGDISVEEASEENSEAASNEVEDAPVVRFLHKMLLDAFNMRASDLHFE PYEHNYRVRFRIDGELREIASPPIAIKEKLASRIKVISRLDISEKRVPQDGRMKLKVG PDRVIDFRVSTLPTLFGEKIVIRILDPSSAKMGIDALGYEPEEKERLLQAISRPYGMI LVTGPTGSGKTVSLYTCLNLLNKPGVNIATAEDPSEINLPGVNQVNVNEKAGLTFATA LKAFLRQDPDIIMVGEIRDLETADISIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIA PFNIASSVILITAQRLARRLCPQCKAPADIPHETLLEAGYKEEEIDGSWVTYRPVGCS ACNNGYKGRVGIYQVMPVSEETQRIILRDGSALDIAKQARQEGVRSLRESGLHKAKMG LTSLEEVLAVTNE" misc_feature complement(973203..974888) /locus_tag="Alide_0918" /note="type IV-A pilus assembly ATPase PilB; Region: type_IV_pilB; TIGR02538" /db_xref="CDD:162908" misc_feature complement(974490..974786) /locus_tag="Alide_0918" /note="GSPII_E N-terminal domain; Region: GSPII_E_N; pfam05157" /db_xref="CDD:191212" misc_feature complement(973389..974189) /locus_tag="Alide_0918" /note="PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129" /db_xref="CDD:29995" misc_feature complement(973905..973928) /locus_tag="Alide_0918" /note="Walker A motif; other site" /db_xref="CDD:29995" misc_feature complement(order(973716..973721,973839..973844, 973848..973850,973905..973913,973923..973925)) /locus_tag="Alide_0918" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29995" misc_feature complement(973716..973733) /locus_tag="Alide_0918" /note="Walker B motif; other site" /db_xref="CDD:29995" gene 975890..977584 /locus_tag="Alide_0919" /db_xref="GeneID:10102949" CDS 975890..977584 /locus_tag="Alide_0919" /inference="similar to AA sequence:KEGG:Pcar_1822" /note="KEGG: pca:Pcar_1822 DNA primase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125572.1" /db_xref="GI:319761635" /db_xref="GeneID:10102949" /translation="MNKTILSTTGTPLNQQDNGTRGGYIALGMVGNKFAVFSLLNKQV QILGSSDLKEMNLKALFGALWCEQHYNEFDAKKEEVVFNHKRLATDILSACQAAGTYS ETAERRVGVWKMNDGQLVVNGRQLWRADGTVLEHGIHEGQVYPVSGDVGFDLSTPMAT REEVNKVLAAFNSPQWIHPMAGELVLGFLGMSLVSAALSRRPHVLMTGPAACGKSTVL GYVRLMLGRLAHPCSGPQNLAGLYQSIGGTSKAVINDEFEADSRSKSCKETFEIARMS YSMQEEDKGIVRGTSSGNSRSYRFCSPFIAAGISPGKMEPADLTRWVTLEAERTPQGE RLSDAEARELGPKLARLYLSRWNVFQASEDVVRDCILSLGGDGRMADTIGTLLASYWA FVSETPATEEDAKFLVNMLGIEERIAVHQVSDELQCLEALTSRVVPFKVVAGAALVTR HLSIAQAIEMVCADPTGQPELVMRLAQMGLRVAFAKGKWSLYVVNSPMHQELRKLFAG TKWATGGWSVVLRRLPGGEESTQRIGAGLGAAKVTVVDVPEHLLSAGNEDNMLLAA" gene complement(977965..978924) /locus_tag="Alide_0920" /db_xref="GeneID:10102950" CDS complement(977965..978924) /locus_tag="Alide_0920" /inference="similar to AA sequence:KEGG:Lcho_1774" /note="KEGG: lch:Lcho_1774 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125573.1" /db_xref="GI:319761636" /db_xref="GeneID:10102950" /translation="MRPEHSPLASSTSASAPSLFEQECEAVGRASAAANLRFDKSGPE TYQRAFRKYKGPVARQDYFVRKCLGLRLNAIKRGMLVDPSVTPDHLRYITDGICPVTL EPLEFETRGQSKLNPSVDRLVNDVGYRAGNICILSQRANRAKGEKSFEEVASIATQGE PAGGLEPVEWMRLCSLMYGAWDKAYQRGDPHLLPLAAIPGPGMFMSTSQVVQLMLTRL AQGLLPADRAHTMWRDLTVAAVAQVHLYDEMMALLKVAISEEEHPGNAWLHGDVFTAF EHWYNASHRTLVPHVESMLQARTQQRDDPVAKELWPVGGRYHH" gene complement(979080..979994) /locus_tag="Alide_0921" /db_xref="GeneID:10102951" CDS complement(979080..979994) /locus_tag="Alide_0921" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004125574.1" /db_xref="GI:319761637" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10102951" /translation="MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSAR AQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIVVARCTVERLMRAMGLQGARRG RAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAASDTSTKVST" misc_feature complement(979098..979934) /locus_tag="Alide_0921" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(979263..979619) /locus_tag="Alide_0921" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(979991..980314) /locus_tag="Alide_0922" /db_xref="GeneID:10102952" CDS complement(979991..980314) /locus_tag="Alide_0922" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004125575.1" /db_xref="GI:319761638" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10102952" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature complement(980057..980314) /locus_tag="Alide_0922" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene complement(980568..980942) /locus_tag="Alide_0923" /db_xref="GeneID:10102953" CDS complement(980568..980942) /locus_tag="Alide_0923" /inference="similar to AA sequence:KEGG:Rpic12D_2703" /note="KEGG: rpf:Rpic12D_2703 DNA binding domain protein, excisionase family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125576.1" /db_xref="GI:319761639" /db_xref="GeneID:10102953" /translation="MPNCQEFRLVTRADVAQMFGVCVKTVDNYIKEGLLPQPVQFASR EYWHPDDMRSFIDATFKRSSPAPLPNAAAQSTDAQMAPQASATRHDAQPNPPSPKSRD SHPTVRAKTRGHALLQRLNSTT" misc_feature complement(<980811..980921) /locus_tag="Alide_0923" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene complement(981016..982605) /locus_tag="Alide_0924" /db_xref="GeneID:10102954" CDS complement(981016..982605) /locus_tag="Alide_0924" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: rpf:Rpic12D_2659 integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004125577.1" /db_xref="GI:319761640" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10102954" /translation="MAHIANRSRFRVTVKNKPDLTQHFSFSKVAAVEAYMKELRAQGY KPRAEQLDESWLVRIRERGHKPLEATFESEAAATQFIEKTSEERKRGLFIDYTAALKV TFADILVRYLLEETSRKKSGEVLAYVLEGWLEDSGPRGIELLAQYREELRARGRKVRQ PKFKMRQPSTELAWIHKRLAEVTTVDIEGFIDERLEVVAKGTVDREIDRLKAIFKVAL KVWDYNLAKNPMDAVRRPDFFNERDRRISADEERRLLEALAQLDLERAVQPVLRELAD QEMSNMQFTSPSARKKVLVEVRNRLRAQAEEEAHVEPYLQAFYLFQVMTGARRGETVN LTWDRIDFEAKTAYLPETKNGRARKLALRQDLIDILAELPKNTAFVFDVGLDHIVGAW DKACSMAGIQDLRIHDCRHEALSRLAETGKFSIPELQVFSGHRDIRMLMRYAHLCASR LAAKLDECFKDDAKIRVHRGRRFLNKHADVKVKDLLDASSDRETVVADTLPCTEAQEA VIEEAPSPASNVIVFRPRLRA" misc_feature complement(981244..982002) /locus_tag="Alide_0924" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(981256..981684) /locus_tag="Alide_0924" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature complement(order(981277..981279,981385..981393, 981547..981549,981619..981624)) /locus_tag="Alide_0924" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature complement(order(981277..981279,981304..981306, 981376..981378,981385..981387,981547..981549, 981622..981624)) /locus_tag="Alide_0924" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature complement(order(981277..981279,981304..981306, 981376..981378,981385..981387,981622..981624)) /locus_tag="Alide_0924" /note="active site" /db_xref="CDD:29495" gene complement(982775..982851) /locus_tag="Alide_R0008" /note="tRNA-Pro3" /db_xref="GeneID:10102955" tRNA complement(982775..982851) /locus_tag="Alide_R0008" /product="tRNA-Pro" /db_xref="GeneID:10102955" gene complement(982877..983926) /locus_tag="Alide_0925" /db_xref="GeneID:10102956" CDS complement(982877..983926) /locus_tag="Alide_0925" /inference="protein motif:PFAM:PF00348" /note="PFAM: Polyprenyl synthetase; KEGG: ajs:Ajs_0840 dimethylallyltranstransferase" /codon_start=1 /transl_table=11 /product="polyprenyl synthetase" /protein_id="YP_004125578.1" /db_xref="GI:319761641" /db_xref="InterPro:IPR000092" /db_xref="GeneID:10102956" /translation="MDPQPPWGASYNCRFTSPPPITLAANSPSTAATLALIADDMREV DKVIAARLQSSVPLVGSVAQYIISAGGKRLRPALLLLTCGALEYKGEQRFNLAAVVEF IHTATLLHDDVVDESTLRRGRPTANEAFGNPASVLVGDFLHTRSFQMMVEAGSMRILQ VLADATNVIAEGEVQQLMNTHDASLDEAGYLHVIRSKTAKLFEASARLAAILAGSTPD IEQACADYGQALGTAFQVIDDVLDYDGDAQEMGKNLGDDLREGKVTLPLIIAMQRGSQ AQRELLRNVIETGSADELQPVIAIIRETGALTATRDAAAAQARLAMDAAAKLPANPYT KGLLQLAAQLLERRT" misc_feature complement(982928..983824) /locus_tag="Alide_0925" /note="octaprenyl diphosphate synthase; Provisional; Region: PRK10888" /db_xref="CDD:182813" misc_feature complement(983108..983767) /locus_tag="Alide_0925" /note="Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685" /db_xref="CDD:173833" misc_feature complement(order(983141..983143,983156..983158, 983171..983173,983201..983203,983210..983215, 983324..983326,983333..983338,983399..983401, 983408..983410,983564..983569,983582..983587, 983591..983599,983603..983611,983618..983620)) /locus_tag="Alide_0925" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature complement(983582..983611) /locus_tag="Alide_0925" /note="chain length determination region; other site" /db_xref="CDD:173833" misc_feature complement(order(983141..983143,983156..983158, 983171..983173,983201..983203,983210..983215, 983336..983338,983399..983401,983564..983569, 983582..983584,983591..983596)) /locus_tag="Alide_0925" /note="substrate-Mg2+ binding site; other site" /db_xref="CDD:173833" misc_feature complement(order(983210..983215,983336..983338, 983564..983569,983582..983584,983591..983596)) /locus_tag="Alide_0925" /note="catalytic residues [active]" /db_xref="CDD:173833" misc_feature complement(order(983336..983338,983399..983401, 983564..983569,983582..983584,983591..983596)) /locus_tag="Alide_0925" /note="aspartate-rich region 1; other site" /db_xref="CDD:173833" misc_feature complement(order(983135..983149,983156..983173, 983189..983194,983534..983578)) /locus_tag="Alide_0925" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature complement(order(983141..983143,983156..983158, 983171..983173,983201..983203,983210..983215)) /locus_tag="Alide_0925" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene 984033..984344 /locus_tag="Alide_0926" /db_xref="GeneID:10102957" CDS 984033..984344 /locus_tag="Alide_0926" /inference="protein motif:TFAM:TIGR00061" /note="KEGG: ajs:Ajs_0841 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21" /codon_start=1 /transl_table=11 /product="ribosomal protein l21" /protein_id="YP_004125579.1" /db_xref="GI:319761642" /db_xref="GO:0003723" /db_xref="GO:0003735" /db_xref="InterPro:IPR001787" /db_xref="InterPro:IPR018258" /db_xref="GeneID:10102957" /translation="MYAVIKTGGKQYRVAAGEKIKVEQIAAEVGQEIVIDQVLAVGNG AELKVGTPLVSGATVKATVVAHGKHDKVRIFKLRRRKHYQKRQGHRQQFTELQIQAIA A" misc_feature 984033..984341 /locus_tag="Alide_0926" /note="Ribosomal prokaryotic L21 protein; Region: Ribosomal_L21p; cl00382" /db_xref="CDD:185955" gene 984360..984617 /locus_tag="Alide_0927" /db_xref="GeneID:10102958" CDS 984360..984617 /locus_tag="Alide_0927" /inference="protein motif:TFAM:TIGR00062" /note="KEGG: dia:Dtpsy_0771 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27" /codon_start=1 /transl_table=11 /product="ribosomal protein l27" /protein_id="YP_004125580.1" /db_xref="GI:319761643" /db_xref="GO:0003735" /db_xref="InterPro:IPR001684" /db_xref="InterPro:IPR018261" /db_xref="GeneID:10102958" /translation="MAQKKGGGSTRNGRDSKPKMLGVKAYGGELISAGSIIVRQRGTR IHPGVNVGVGKDHTLFALVDGHVSFGTKGALSKHTVSVTPA" misc_feature 984360..984605 /locus_tag="Alide_0927" /note="Ribosomal L27 protein; Region: Ribosomal_L27; cl00359" /db_xref="CDD:193785" gene 984743..985816 /locus_tag="Alide_0928" /db_xref="GeneID:10102959" CDS 984743..985816 /locus_tag="Alide_0928" /inference="protein motif:TFAM:TIGR02729" /note="KEGG: ajs:Ajs_0843 GTPase ObgE; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related" /codon_start=1 /transl_table=11 /product="gtp-binding protein obg/cgta" /protein_id="YP_004125581.1" /db_xref="GI:319761644" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR006073" /db_xref="InterPro:IPR006074" /db_xref="InterPro:IPR006169" /db_xref="InterPro:IPR014100" /db_xref="GeneID:10102959" /translation="MKFVDEAFIDVAAGDGGNGCVSFRHEKYKEFGGPNGGDGGRGGH VFAVADPNLNTLVDFRYSRRHEAKRGEHGMGSDMFGAAGSDITLKMPVGTIISDANTG ELLYELLTPGEVVTIAKGGDGGFGNLRFKSAINRAPRQKTPGWPGERKSLKLELKVLA DVGLLGMPNAGKSTFIAAVSNARPKIADYPFTTLHPNLGVVRVGPEQSFVVADIPGLI EGASEGAGLGHQFLRHLQRTRLLLHVVDMAPFDESVDPVAQAKAIVAELKKYDTQLYE KPRWLVLNKLDMVPAEERAARVKDFVKRFKWKGPVFEISALTREGCEPLVKAIYQHVR AQQQAAQAPAEVDPRFAEGNPPA" misc_feature 984746..985744 /locus_tag="Alide_0928" /note="GTPase CgtA; Reviewed; Region: obgE; PRK12299" /db_xref="CDD:183417" misc_feature 984749..985216 /locus_tag="Alide_0928" /note="GTP1/OBG; Region: GTP1_OBG; pfam01018" /db_xref="CDD:110047" misc_feature 985220..985741 /locus_tag="Alide_0928" /note="Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins...; Region: Obg; cd01898" /db_xref="CDD:133298" misc_feature 985238..985261 /locus_tag="Alide_0928" /note="G1 box; other site" /db_xref="CDD:133298" misc_feature order(985247..985264,985592..985597,985601..985603, 985685..985690) /locus_tag="Alide_0928" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133298" misc_feature 985283..985330 /locus_tag="Alide_0928" /note="Switch I region; other site" /db_xref="CDD:133298" misc_feature 985319..985321 /locus_tag="Alide_0928" /note="G2 box; other site" /db_xref="CDD:133298" misc_feature 985379..985390 /locus_tag="Alide_0928" /note="G3 box; other site" /db_xref="CDD:133298" misc_feature order(985388..985411,985418..985456) /locus_tag="Alide_0928" /note="Switch II region; other site" /db_xref="CDD:133298" misc_feature 985592..985603 /locus_tag="Alide_0928" /note="G4 box; other site" /db_xref="CDD:133298" misc_feature 985685..985693 /locus_tag="Alide_0928" /note="G5 box; other site" /db_xref="CDD:133298" gene 985881..987020 /locus_tag="Alide_0929" /db_xref="GeneID:10102960" CDS 985881..987020 /locus_tag="Alide_0929" /inference="protein motif:TFAM:TIGR01027" /note="TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: dia:Dtpsy_0773 gamma-glutamyl kinase; SMART: PUA domain containing protein" /codon_start=1 /transl_table=11 /product="glutamate 5-kinase" /protein_id="YP_004125582.1" /db_xref="GI:319761645" /db_xref="GO:0004349" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR001057" /db_xref="InterPro:IPR002478" /db_xref="InterPro:IPR005715" /db_xref="InterPro:IPR011529" /db_xref="InterPro:IPR019797" /db_xref="GeneID:10102960" /translation="MVSSVLRDARRIVVKVGSSLVTNEGRGLDEVAIGEWSRQLAALV RGEGGEPREVIMVSSGAIAEGMKRLGWSARPSEIHELQAAAAVGQMGLAQMYETKLRE QAMRSAQVLLTHADLADRERYLNARSTLLTLLRLGVVPVINENDTVVTDEIKFGDNDT LGALVANLVEADVLVILTDQKGLYTADPRRDPGAQFVHEAQAGDPALEVMAGGAGSSI GKGGMITKIVAARRAAGSGASTVIAWGREPDVLLRLAQGEPIGTLLVAQTQKKQARKQ WMVDHLQLRGSVTVDAGAAAKLRDEGKSLLPIGMVAVEGDFVRGDVIAVRDAGGTEIA RGLANYASAEARLLCRRPSSEFERLLGYAAEPEMVHRDNMVVSGN" misc_feature 985884..987008 /locus_tag="Alide_0929" /note="gamma-glutamyl kinase; Provisional; Region: PRK05429" /db_xref="CDD:180076" misc_feature 985911..986675 /locus_tag="Alide_0929" /note="AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine)...; Region: AAK_G5K_ProB; cd04242" /db_xref="CDD:58608" misc_feature order(985935..985937,986412..986420,986427..986432, 986538..986540,986544..986546,986556..986558) /locus_tag="Alide_0929" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58608" misc_feature order(986013..986018,986034..986036,986124..986126, 986136..986138,986205..986207,986211..986213, 986253..986258,986274..986276,986283..986285, 986313..986315,986319..986324) /locus_tag="Alide_0929" /note="homotetrameric interface [polypeptide binding]; other site" /db_xref="CDD:58608" misc_feature 986058..986081 /locus_tag="Alide_0929" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:58608" misc_feature order(986061..986063,986316..986318,986349..986351) /locus_tag="Alide_0929" /note="putative allosteric binding site; other site" /db_xref="CDD:58608" misc_feature 986736..986960 /locus_tag="Alide_0929" /note="PUA domain; Region: PUA; cl00607" /db_xref="CDD:153884" gene complement(987044..987718) /locus_tag="Alide_0930" /db_xref="GeneID:10102961" CDS complement(987044..987718) /locus_tag="Alide_0930" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_0774 dinucleoside polyphosphate hydrolase" /codon_start=1 /transl_table=11 /product="nudix hydrolase" /protein_id="YP_004125583.1" /db_xref="GI:319761646" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR020084" /db_xref="InterPro:IPR020476" /db_xref="GeneID:10102961" /translation="MLDRDGFRPNVGIILLNQRNQVFWGKRIRTHSWQFPQGGIDRGE NPEQAMFRELHEEVGLQPNQVRVIARTRDWLRYEVPDRYIRRDARGHYRGQKQIWYLL QLLGHDWDLNLRATDHPEFDAWRWNDYWVPLDVVVEFKRGVYEMALTELARFLPRYDQ RNRYLRSGMRARDPEGGGQAPMQRAGSLLVKPGMELPPGASFDPDPQGGMPAPLADAP HGSPRK" misc_feature complement(987266..987703) /locus_tag="Alide_0930" /note="Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where...; Region: Ap4A_hydrolase_plant_like; cd03671" /db_xref="CDD:72891" misc_feature complement(order(987299..987304,987308..987310, 987434..987436,987458..987463,987470..987472, 987482..987484,987488..987490,987548..987553, 987560..987562,987605..987610,987617..987619, 987629..987631,987638..987640,987689..987691)) /locus_tag="Alide_0930" /note="putative active site [active]" /db_xref="CDD:72891" misc_feature complement(order(987299..987304,987308..987310, 987434..987436,987458..987463,987470..987472, 987482..987484,987488..987490,987605..987610, 987617..987619,987629..987631,987638..987640, 987689..987691)) /locus_tag="Alide_0930" /note="Ap4A binding site [chemical binding]; other site" /db_xref="CDD:72891" misc_feature complement(987539..987607) /locus_tag="Alide_0930" /note="nudix motif; other site" /db_xref="CDD:72891" misc_feature complement(order(987548..987553,987560..987562)) /locus_tag="Alide_0930" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:72891" gene 987820..989565 /locus_tag="Alide_0931" /db_xref="GeneID:10102962" CDS 987820..989565 /locus_tag="Alide_0931" /inference="protein motif:TFAM:TIGR00409" /note="KEGG: dia:Dtpsy_0775 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein" /codon_start=1 /transl_table=11 /product="prolyl-tRNA synthetase" /protein_id="YP_004125584.1" /db_xref="GI:319761647" /db_xref="GO:0000166" /db_xref="GO:0004827" /db_xref="GO:0005524" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR002316" /db_xref="InterPro:IPR004154" /db_xref="InterPro:IPR004500" /db_xref="InterPro:IPR006195" /db_xref="InterPro:IPR007214" /db_xref="GeneID:10102962" /translation="MKASQFFISTLKEAPADAEVVSHKLMMRAGLIKKLGAGIYSYMP MGLRVIRKVEAIVREEMNRAGAVECTMPVVQPAELWQETGRFEKMGPELLRIQDRHGR DFVIQPTSEEVVTDIARQELRSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDA YSFDRDQAGAKASYQAMAQAYRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGE DAIVYCPASDYAANMEKAEALAPAGPRPAAAAPMTRTPTPGKATCAEVAELLGVPLQT TVKSLVLATDETNEAGEIVKSQVWLLLLRGDHDMNEIKVSKVPGLDKGFRFATVTEIE AHFGAKPGYLGPIGLRKPVQVVADREVALMADWICGANEEDFHITGVNWGRDLPEPDA VADLRNVVAGDPSPDGKGVLAIERGIEVGHVFYLGTKYSKAMNATFLGEDGKPAFFEM GCYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPIGMDRSEEVRAVAEKLHGE LLASGIDVILDDRGERPGAMFADWELIGVPHRITIGDKGLKEGQVEYLHRRDAGATKV GVAEILAHVKERVAA" misc_feature 987820..989550 /locus_tag="Alide_0931" /note="prolyl-tRNA synthetase; Provisional; Region: PRK09194" /db_xref="CDD:181689" misc_feature 987868..>988464 /locus_tag="Alide_0931" /note="Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation...; Region: ProRS_core_prok; cd00779" /db_xref="CDD:73229" misc_feature order(987916..987921,987940..987951,987970..987972, 988021..988029,988033..988038,988096..988098, 988102..988116,988168..988170,988228..988230, 988279..988281) /locus_tag="Alide_0931" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73229" misc_feature 988015..988038 /locus_tag="Alide_0931" /note="motif 1; other site" /db_xref="CDD:73229" misc_feature order(988144..988146,988150..988152,988237..988239, 988243..988245,988267..988275,988282..988284, 988288..988290,988294..988296) /locus_tag="Alide_0931" /note="active site" /db_xref="CDD:73229" misc_feature 988234..988245 /locus_tag="Alide_0931" /note="motif 2; other site" /db_xref="CDD:73229" misc_feature 988495..989007 /locus_tag="Alide_0931" /note="INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-...; Region: ProRS-INS; cd04334" /db_xref="CDD:88585" misc_feature order(988654..988656,988843..988848,988927..988929) /locus_tag="Alide_0931" /note="putative deacylase active site [active]" /db_xref="CDD:88585" misc_feature <989053..989220 /locus_tag="Alide_0931" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:193739" misc_feature order(989068..989073,989083..989085,989173..989178, 989182..989187,989194..989196) /locus_tag="Alide_0931" /note="active site" /db_xref="CDD:29813" misc_feature order(989185..989187,989194..989196) /locus_tag="Alide_0931" /note="motif 3; other site" /db_xref="CDD:29813" misc_feature 989263..989547 /locus_tag="Alide_0931" /note="ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-...; Region: ProRS_anticodon_short; cd00861" /db_xref="CDD:29801" misc_feature order(989287..989292,989407..989409,989425..989427, 989449..989451,989479..989481,989485..989487) /locus_tag="Alide_0931" /note="anticodon binding site; other site" /db_xref="CDD:29801" gene 989562..990206 /locus_tag="Alide_0932" /db_xref="GeneID:10102963" CDS 989562..990206 /locus_tag="Alide_0932" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase catalytic; KEGG: ajs:Ajs_0847 lytic transglycosylase, catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic" /protein_id="YP_004125585.1" /db_xref="GI:319761648" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10102963" /translation="MTAGVRRRACLAALAGGPAAWLGLPAAAHAGGQLEEPLVDSVRT ALSSAVADLAPPEPLFVTTEARLVYLRWLGAMSDRLRRSKPDWEVRRDFLQTVWYESK RAGLDVSLVLGLIQVESAFRKFAVSPVGARGYMQVMPFWSRTIGDGDAGKLFHMQTNL RFGCVILRHYLDRERGDLYMALGRYNGSRGKAPYPNAVFAAQRRWLFQDRSAEA" sig_peptide 989562..989654 /locus_tag="Alide_0932" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.949 at residue 31" misc_feature 989883..>990143 /locus_tag="Alide_0932" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(989913..989915,989973..989975,990057..990059, 990114..990116) /locus_tag="Alide_0932" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 989913..989915 /locus_tag="Alide_0932" /note="catalytic residue [active]" /db_xref="CDD:29556" gene complement(990182..991516) /locus_tag="Alide_0933" /db_xref="GeneID:10102964" CDS complement(990182..991516) /locus_tag="Alide_0933" /inference="protein motif:PFAM:PF01595" /note="PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: dia:Dtpsy_0777 protein of unknown function DUF21" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125586.1" /db_xref="GI:319761649" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR002550" /db_xref="InterPro:IPR005170" /db_xref="GeneID:10102964" /translation="MTLTESLFIIGLLIAASAFFSVAEISLAASRRLRLRQMADEGDA RAARVLHVQEQPGDYFTVVQVGLNAVAILGGIVGEGTLSPYFGALFGLWLPEGRAQAL GFLASFLAVTSLFILFADLCPKRLGMANPERLAVRVIGPMQLCMTLFKPVIWLYSRTA DMLLALSGLPVQRDERVTSDDILAMMEAGARAGVLAAQEQQVIANVFELDSRSVTSAM TLRERIAFFRRDDPDELIRARIAAEPFSTYPVCDGDIDHVVGYVDAKDLFQRALKNQP ISLAEEGLVRKVLIVPDRLSLAEVLAHFRQVHEDFAVIVNEYSRVVGVVTLNDVMSTV MGDLVGPADEEQIVRRDENSWLIDGTTPIEDVLHALGIDELPHAGDYETLAGFLMVML RRVPRRTDSVSVGGYLFEVLDVDSYRIDQVMVSRLGRAAQAGEEAQASAERS" misc_feature complement(990236..991516) /locus_tag="Alide_0933" /note="Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:31445" sig_peptide complement(991445..991516) /locus_tag="Alide_0933" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.943) with cleavage site probability 0.697 at residue 24" misc_feature complement(990920..991498) /locus_tag="Alide_0933" /note="Domain of unknown function DUF21; Region: DUF21; pfam01595" /db_xref="CDD:190047" misc_feature complement(990524..990853) /locus_tag="Alide_0933" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590" /db_xref="CDD:73090" misc_feature complement(990236..990475) /locus_tag="Alide_0933" /note="Transporter associated domain; Region: CorC_HlyC; pfam03471" /db_xref="CDD:190650" gene complement(991560..992567) /locus_tag="Alide_0934" /db_xref="GeneID:10102965" CDS complement(991560..992567) /locus_tag="Alide_0934" /inference="protein motif:PFAM:PF00004" /note="KEGG: aav:Aave_3667 ATPase central domain-containing protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="aaa atpase central domain protein" /protein_id="YP_004125587.1" /db_xref="GI:319761650" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="GeneID:10102965" /translation="MTSHSLVPQTSGLSLPVAQMRSVFHPGDVERKLARLQEAGSQRE YENLRVVYERMLERGPERFQVKPSGVPDMVPLYEHLPNFTDVLDDVKRHVALAQDSRD GLEVTPMLLLGPPGIGKTHFARQLAELLGTGMSLVPMSSMTAGWLLSGASSQWKGARP GKVFEALVEGEYANPVIVVDEIDKAAGDAQYDPLGALYGLLEHDTAQSFTDEFAEVAI DASQVIWITTANDERGIPEPILNRMNVFQVQAPTPSQARAIALNLYHGIRAGHDWGRL VDPEPQPAVLDLLAQMPPREMRRALMTGFGNARLARRSTVEADDLPRAAGAKGRIGFM Q" misc_feature complement(991836..992246) /locus_tag="Alide_0934" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(991851..992246) /locus_tag="Alide_0934" /note="AAA domain (dynein-related subfamily); Region: AAA_5; pfam07728" /db_xref="CDD:191829" misc_feature complement(992208..992231) /locus_tag="Alide_0934" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(991884..991886,992028..992030, 992205..992228)) /locus_tag="Alide_0934" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(992025..992042) /locus_tag="Alide_0934" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(991842..991844) /locus_tag="Alide_0934" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(991629..>991799) /locus_tag="Alide_0934" /note="indolepyruvate ferredoxin oxidoreductase; Validated; Region: PRK09193" /db_xref="CDD:181688" gene complement(992708..993040) /locus_tag="Alide_0935" /db_xref="GeneID:10102966" CDS complement(992708..993040) /locus_tag="Alide_0935" /inference="protein motif:TFAM:TIGR00365" /note="KEGG: dia:Dtpsy_0778 glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin" /codon_start=1 /transl_table=11 /product="glutaredoxin-like protein" /protein_id="YP_004125588.1" /db_xref="GI:319761651" /db_xref="InterPro:IPR002109" /db_xref="InterPro:IPR004480" /db_xref="InterPro:IPR014434" /db_xref="GeneID:10102966" /translation="MSDVQQRIDQLVKSNDILLFMKGNASFPMCGFSGRAVQILKACG VDPKDIAAVNVLEDDEIRQGIKDYSNWPTIPQLYVKGEFIGGSDIMMEMYESGELQQV LGTQQQAG" misc_feature complement(992741..993019) /locus_tag="Alide_0935" /note="Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain...; Region: GRX_PICOT_like; cd03028" /db_xref="CDD:48577" misc_feature complement(order(992819..992824,992945..992953, 992975..992977)) /locus_tag="Alide_0935" /note="putative GSH binding site [chemical binding]; other site" /db_xref="CDD:48577" misc_feature complement(order(992942..992944,992951..992953)) /locus_tag="Alide_0935" /note="catalytic residues [active]" /db_xref="CDD:48577" gene complement(993097..993942) /locus_tag="Alide_0936" /db_xref="GeneID:10102967" CDS complement(993097..993942) /locus_tag="Alide_0936" /inference="protein motif:TFAM:TIGR03534" /note="KEGG: ajs:Ajs_0850 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small" /codon_start=1 /transl_table=11 /product="protein-(glutamine-n5) methyltransferase, release factor-specific" /protein_id="YP_004125589.1" /db_xref="GI:319761652" /db_xref="GO:0008276" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR004556" /db_xref="InterPro:IPR007848" /db_xref="InterPro:IPR019874" /db_xref="GeneID:10102967" /translation="MNEIATIAQALARAQARGLARIDAQMLLLHALGRPTGDRAWLLA HDTDPLDAPALARYQALCARRAAGEPVAYLTGSKEFYGLPLRVDARVLDPRPDTEILV DWALELLAPLPAPRVADLGTGSGAIALALQHARPDARVLAMDASAGALAVARANAERL GLPVRFVQADWLAGIAGPFDAIVSNPPYIPAQDPHLAALAHEPLSALASGADGLDDIR AIAAQAPALLAPGGWLLLEHGWDQAGAVQALLRASGLARVQSRDDLAGIARCTGGSMP AAGRQ" misc_feature complement(993124..993876) /locus_tag="Alide_0936" /note="N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328" /db_xref="CDD:181780" misc_feature complement(993346..993597) /locus_tag="Alide_0936" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(993388..993390,993430..993438, 993508..993513,993565..993585)) /locus_tag="Alide_0936" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(993985..995067) /locus_tag="Alide_0937" /db_xref="GeneID:10102968" CDS complement(993985..995067) /locus_tag="Alide_0937" /inference="protein motif:TFAM:TIGR00019" /note="KEGG: ajs:Ajs_0851 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein" /codon_start=1 /transl_table=11 /product="peptide chain release factor 1" /protein_id="YP_004125590.1" /db_xref="GI:319761653" /db_xref="GO:0008276" /db_xref="InterPro:IPR000352" /db_xref="InterPro:IPR004373" /db_xref="InterPro:IPR005139" /db_xref="GeneID:10102968" /translation="MKPFLRSQLERYAQRLSELDFLLSREDIMADMQQYRAISREHAD VTAVAGRYARYRQREADLEGAREMLEDPDMAEMAQEEIAAAEAELAQLEDELQRMLLP KDPDDERNAFVEIRAGTGGDESALFAGDLARMYTRYAATQGWKVEVMSANESELGGYK EVVLRIEGDHAYGRLRFESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEAQAITLN PADLRIDTFRASGAGGQHINKTDSAVRVVHLPTGIVAECQDGRSQHANKAKALQVLQA RIQEKERSERAAKEAALRKGLIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAVME GDLGEVLQALQHAREAELLAELETAV" misc_feature complement(994048..995064) /locus_tag="Alide_0937" /note="peptide chain release factor 1; Validated; Region: prfA; PRK00591" /db_xref="CDD:179074" misc_feature complement(994534..994869) /locus_tag="Alide_0937" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" misc_feature complement(994105..994440) /locus_tag="Alide_0937" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" gene complement(995168..996481) /locus_tag="Alide_0938" /db_xref="GeneID:10102969" CDS complement(995168..996481) /locus_tag="Alide_0938" /inference="protein motif:TFAM:TIGR01035" /note="KEGG: dia:Dtpsy_0781 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA reductase" /protein_id="YP_004125591.1" /db_xref="GI:319761654" /db_xref="GO:0008883" /db_xref="GO:0050661" /db_xref="InterPro:IPR000343" /db_xref="InterPro:IPR006151" /db_xref="InterPro:IPR006162" /db_xref="InterPro:IPR015895" /db_xref="InterPro:IPR015896" /db_xref="InterPro:IPR018214" /db_xref="GeneID:10102969" /translation="MAVWALGINHHTAPLDLRGRFAFALDQIAPTLHGLRQSLAQGAG RHPDVETAIISTCNRTEIYCAAEAPALDHTLDWLASSGGVSPSLLRSHSYTLESGLVA RHAFRVASGLDSMVLGEAQILGQMKDAVRAAKGAGALGTTLNQLFQRSFAVAKEVRTS TDIGAHSISMAAAAVRLAGQLFEDLSKIRVLFVGAGEMIELCATHFAARNPKQIAIAN RTLERGEKLATRFGGEVMRLADLPDHLHEFDAVVSCTASTLPIIGLGAVERALKKRRH RPIFMVDLAVPRDIEPEVKQLEDVYLYTVDDLASVVQTAQAHRQAAVAQAEAIIDAGV QSFMHWMELRTPAAGPSGGVVPLIRQLNTQTDEWRALEIARAKKLLAKGEDIDTVLEA LSRGLTQKMLHGTMAELRAGDAETRAQTAQTVSRLFLRSSSRNGL" misc_feature complement(995198..996481) /locus_tag="Alide_0938" /note="glutamyl-tRNA reductase; Reviewed; Region: hemA; PRK00045" /db_xref="CDD:178819" misc_feature complement(995558..996469) /locus_tag="Alide_0938" /note="NADP-binding domain of glutamyl-tRNA reductase; Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213" /db_xref="CDD:133452" misc_feature complement(order(996077..996079,996089..996091, 996098..996100,996110..996112,996119..996121, 996314..996316,996425..996427)) /locus_tag="Alide_0938" /note="tRNA; other site" /db_xref="CDD:133452" misc_feature complement(order(996107..996109,996119..996121, 996125..996127,996140..996142,996305..996307, 996311..996316)) /locus_tag="Alide_0938" /note="putative tRNA binding site [nucleotide binding]; other site" /db_xref="CDD:133452" misc_feature complement(order(995885..995887,995894..995896, 995900..995902)) /locus_tag="Alide_0938" /note="putative NADP binding site [chemical binding]; other site" /db_xref="CDD:133452" misc_feature complement(995198..995497) /locus_tag="Alide_0938" /note="Glutamyl-tRNAGlu reductase, dimerisation domain; Region: GlutR_dimer; pfam00745" /db_xref="CDD:189697" gene 996556..996831 /locus_tag="Alide_0939" /db_xref="GeneID:10102970" CDS 996556..996831 /locus_tag="Alide_0939" /inference="similar to AA sequence:KEGG:Dtpsy_0782" /note="KEGG: dia:Dtpsy_0782 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125592.1" /db_xref="GI:319761655" /db_xref="GeneID:10102970" /translation="MSPLAAINHLLNFAAPALAVAVLLASFAHVFMRKMAKTHGWLAP IAINFIVGCAVLAAGLVLLGRDGRMLTYAALVLACATSQWLLLRAWR" sig_peptide 996556..996642 /locus_tag="Alide_0939" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.844 at residue 29" gene complement(996948..997841) /locus_tag="Alide_0940" /db_xref="GeneID:10102971" CDS complement(996948..997841) /locus_tag="Alide_0940" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0783 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125593.1" /db_xref="GI:319761656" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10102971" /translation="MRMHSPSLPELHAFAAAARLGSFSRAAGELHVTQGAISRAIARL EEHLGVALFEREGRRSVLTRAGADYLDAVGPSITAIESATLAVRTRRSPRQLRLSVPP TLFSHWLIPRLPDFSARHPGIGLSFAPYRRDDPLSAPDIDAWIRIGQADWPAGITAEY LVGRELVPLCRPADLPQLRTPADLLARPLLFHTNYPGNWAHWFANVGCTHGPLVPAAD FDQVSLLVQAVIAGMGVAVVQRALVEPELAAGRIAVAIALEPPVLLDRGYHLCRPAGR APSPALENLRAWLLEQAAACA" misc_feature complement(996957..997826) /locus_tag="Alide_0940" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(997644..997811) /locus_tag="Alide_0940" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(996975..997559) /locus_tag="Alide_0940" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(997149..997154,997158..997163, 997179..997196,997455..997475,997479..997481, 997491..997493,997500..997505,997509..997514)) /locus_tag="Alide_0940" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 997967..998950 /locus_tag="Alide_0941" /db_xref="GeneID:10102972" CDS 997967..998950 /locus_tag="Alide_0941" /inference="similar to AA sequence:KEGG:Ajs_0855" /note="KEGG: ajs:Ajs_0855 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125594.1" /db_xref="GI:319761657" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10102972" /translation="MALRRTLLSTLAACAAAAFAPLALAQADDYPNRPVKLIVPFAPG GSTDMVARLLADKLSSVLGKAVVVDNKGGAGGSIGADAIAKAAPDGYTIGMATVSTHG ANPALYAKLPYDAVKDFAPITNVMSVPSVFVVHPGVPARTMREFVALAKAQPGKYTFA SPGTGSLGHANIENFMHLAGIELLHIPYKGAGQAMTDALAGQVNAMTDNLPSTLPNIQ SGKLRPLAVLALKRSPVLPDVPTYAELGYPGMGDGGWFGLVAPAGTPREIVARLNAAA HKAMAMPDYVEKQKSISGESMANTPEQFARQIQAAIERYTAVAKRAHIRLD" sig_peptide 997967..998044 /locus_tag="Alide_0941" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.886 at residue 26" misc_feature 998048..998932 /locus_tag="Alide_0941" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 998114..998938 /locus_tag="Alide_0941" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 998950..999852 /locus_tag="Alide_0942" /db_xref="GeneID:10102973" CDS 998950..999852 /locus_tag="Alide_0942" /inference="protein motif:PFAM:PF05013" /note="PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase" /codon_start=1 /transl_table=11 /product="n-formylglutamate amidohydrolase" /protein_id="YP_004125595.1" /db_xref="GI:319761658" /db_xref="InterPro:IPR007709" /db_xref="GeneID:10102973" /translation="MDDDLRPRPDTPVEVWHPTAAPLPLVCDSPHSGTAYPEDFGHAV PMQLLRRGEDTHVHRLWRSAPAHGATLIAATFPRTYIDVNRAETDLDPAQIDGEWPVP LAPGPKTRQGLGLVWQQIVKDGVPTPLYARRRTVAEVQRRIERYWRPYHAQLAQAIDA SVRRFGGVWHLNLHSMPNDVYKRLGRVDAPQLADFVLGDRDGTTCAPEFVHLIADTLK GFGYSVAVNEPYKGVELIGRIGQPQLNRHSLQIEIRRPVYMDEDTRASHAGFAPLQQH LDLLLGVVAQYVRGRLAGSEQNWP" misc_feature 999013..999729 /locus_tag="Alide_0942" /note="N-formylglutamate amidohydrolase; Region: FGase; cl01522" /db_xref="CDD:194156" gene complement(999896..1002328) /locus_tag="Alide_0943" /db_xref="GeneID:10102974" CDS complement(999896..1002328) /locus_tag="Alide_0943" /inference="protein motif:PFAM:PF00924" /note="PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel" /codon_start=1 /transl_table=11 /product="mscs mechanosensitive ion channel" /protein_id="YP_004125596.1" /db_xref="GI:319761659" /db_xref="InterPro:IPR006685" /db_xref="GeneID:10102974" /translation="MRLPDNARMQRHRFLPWLFLLCLAASLSLWPAQAENRTAATAAA EQSADEPPLPPVDELRRQLDALPQKIGEQDDGRKLLAEVNAIGAAAERLAARRTADLA DVDLRLSGLGPAPEKGSPADTPDVAEQRAALNKQRTAIDAELKLARLVAVDAAQRGTD LIRQRRAQFQAQLTTRTDSPLGITFWRNLRNSAPTDGARLRALAGELRDAAATAAQPP HRAAFAGYLALALLLAVAGTWAAEHILMRVLPPRLPAARLRRSLLAASAIAANVLIIS AALQFVWSGVALGGPLPENLRALQQATLRAAAYAAFTITLGHALLSPRRSSWRLLPIS DGLARRLARFPWWMGLLSALGVLVADVNDIVGASLAAEVLVHAAFALLVSATMAMALG RMRVGEAQPDAPPQPLWVGLLLAGAGIAVATAVLAVALGFVALAGTLARQMAWSSVVF ASIYLLAHLTDDLCDAILSSRGGFGARIHATLGIDAPLLDQAAVLISGVLRVALFFYM LIALMAPFGTGPDELFRRGTNVDHSLRIGDLALAPQALFTALAVICGGFLAIRMSKRW LTERYFPHTTLEPGMRSSIVTLLGYVGGVLVIAVALAGLGISVERIAWVASALSVGIG FGLQAIVQNFISGLILLAERPVKVGDWVVLGDTEGDVRRVNVRATEIQLGDRSTVIVP NSEFITKTVRNVTAGSAQGRVLLRLPAPLDTDARRMRELILQAFQAHQAVLEAPAPSV TLEGIQSGTLTFLAIGYVGSPRDVGGVRSDLLFSILDALREAGLALSPPATTSVAQRE PPPEPPPLSERT" sig_peptide complement(1002224..1002328) /locus_tag="Alide_0943" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.663) with cleavage site probability 0.656 at residue 35" misc_feature complement(1001705..1001896) /locus_tag="Alide_0943" /note="Protein of unknown function (DUF3772); Region: DUF3772; pfam12607" /db_xref="CDD:153041" misc_feature complement(999962..>1001323) /locus_tag="Alide_0943" /note="Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: COG3264" /db_xref="CDD:33075" misc_feature complement(999971..1000495) /locus_tag="Alide_0943" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" gene complement(1002357..1003106) /locus_tag="Alide_0944" /db_xref="GeneID:10102975" CDS complement(1002357..1003106) /locus_tag="Alide_0944" /inference="protein motif:PFAM:PF03009" /note="PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dia:Dtpsy_0787 glycerophosphodiester phosphodiesterase" /codon_start=1 /transl_table=11 /product="glycerophosphoryl diester phosphodiesterase" /protein_id="YP_004125597.1" /db_xref="GI:319761660" /db_xref="GO:0008889" /db_xref="InterPro:IPR004129" /db_xref="GeneID:10102975" /translation="MSTLASTTWPYPRWIAHRGAGRLAPENTLAAFRLGAQHGYRMFE CDAKLSGDGVVFLMHDATLERTTSGHGIGGERPWSDLAQLDAGGWHSRQYAGEPLPTL ANVAHWCIANGCHLNIEIKPTPGTELETGRAVAQLAARLWQGRDVPPLLTSFKPQALA AAREAAPDLPRGLLLDQLRAGWLDEARTLGCLAVVCNHALWSAATVAEVHGAGLRALS YTVNDEWAAERLIALRTDGIITDRVDLFPPA" misc_feature complement(1002381..1003064) /locus_tag="Alide_0944" /note="Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins; Region: GDPD_EcUgpQ_like; cd08562" /db_xref="CDD:176505" misc_feature complement(1002372..1003058) /locus_tag="Alide_0944" /note="Glycerophosphoryl diester phosphodiesterase family; Region: GDPD; pfam03009" /db_xref="CDD:145909" misc_feature complement(order(1002450..1002452,1002651..1002653, 1002750..1002752,1002930..1002932,1002969..1002971, 1002975..1002977,1003056..1003058)) /locus_tag="Alide_0944" /note="putative active site [active]" /db_xref="CDD:176505" misc_feature complement(order(1002930..1002932,1003056..1003058)) /locus_tag="Alide_0944" /note="catalytic site [active]" /db_xref="CDD:176505" misc_feature complement(order(1002750..1002752,1002969..1002971, 1002975..1002977)) /locus_tag="Alide_0944" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176505" gene complement(1003113..1004120) /locus_tag="Alide_0945" /db_xref="GeneID:10102976" CDS complement(1003113..1004120) /locus_tag="Alide_0945" /inference="protein motif:PFAM:PF00005" /note="KEGG: ctt:CtCNB1_0786 sn-glycerol-3-phosphate transport ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125598.1" /db_xref="GI:319761661" /db_xref="GO:0005215" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013611" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10102976" /translation="MASISLKNIVKRYGSGKSAVPVIHGVNAEIKDGEFIVLVGPSGC GKSTLLRMIAGLEEITGGELFIGDRLVNGLEPARRNIAMVFQNYALYPHMTNFENMAY GLKLAKVPKDEIRRRVDKAAKILELSHLLERKPRELSGGQRQRVAMGRAIVREPQVFL FDEPLSNLDAKLRGQTRIEIQKLHTELGITSLFVTHDQVEAMTLAQRMIVMNAGNVEQ FGTPEEVYHEPATTFVASFIGSPPMNLLKQAPGGQPGRILGIRPEHIDLVESGGWEFK VETLELLGAERLLYGKVGDEDLTVRTEEDKPYPKPGETTRIAPRRDRVHWFSLETGKR V" misc_feature complement(1003116..1004120) /locus_tag="Alide_0945" /note="glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650" /db_xref="CDD:183258" misc_feature complement(1003461..1004111) /locus_tag="Alide_0945" /note="The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two...; Region: ABC_MalK_N; cd03301" /db_xref="CDD:73060" misc_feature complement(1003980..1004003) /locus_tag="Alide_0945" /note="Walker A/P-loop; other site" /db_xref="CDD:73060" misc_feature complement(order(1003533..1003535,1003632..1003637, 1003863..1003865,1003977..1003985,1003989..1003994)) /locus_tag="Alide_0945" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73060" misc_feature complement(1003863..1003874) /locus_tag="Alide_0945" /note="Q-loop/lid; other site" /db_xref="CDD:73060" misc_feature complement(1003680..1003709) /locus_tag="Alide_0945" /note="ABC transporter signature motif; other site" /db_xref="CDD:73060" misc_feature complement(1003632..1003649) /locus_tag="Alide_0945" /note="Walker B; other site" /db_xref="CDD:73060" misc_feature complement(1003614..1003625) /locus_tag="Alide_0945" /note="D-loop; other site" /db_xref="CDD:73060" misc_feature complement(1003527..1003547) /locus_tag="Alide_0945" /note="H-loop/switch region; other site" /db_xref="CDD:73060" misc_feature complement(1003140..1003349) /locus_tag="Alide_0945" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene complement(1004181..1005029) /locus_tag="Alide_0946" /db_xref="GeneID:10102977" CDS complement(1004181..1005029) /locus_tag="Alide_0946" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0789 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125599.1" /db_xref="GI:319761662" /db_xref="GO:0005215" /db_xref="InterPro:IPR000169" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10102977" /translation="MVDRNPWLTFLSHAVLVLGVSIVAFPLYLALVASTHTAEAIVQS PMPLLPGSHLWENYRNALLGSGKLGSTTNVVHMMWVSFVVAITITLGKIAISLLSAFA IVYFRFPFKMLCFWAIFLTLMLPVEVRILPTYKVVADLGLLNSYAGLSLPLIASATAT FLFRQFFLTVPDELVEAARIDGAGPMRFFKDILVPLSRTSIAALFVIQFIYGWNQYLW PLLMTTSEDMYPVVIGIKRMLAGGEAAVDWNIVMATAILAMLPPTLVVILMQKWFVKG LVDTEK" misc_feature complement(1004196..1005029) /locus_tag="Alide_0946" /note="ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395" /db_xref="CDD:30744" misc_feature complement(1004247..1004798) /locus_tag="Alide_0946" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1004253..1004258,1004265..1004270, 1004274..1004279,1004286..1004291,1004325..1004330, 1004367..1004372,1004379..1004390,1004409..1004411, 1004418..1004423,1004463..1004465,1004514..1004516, 1004523..1004528,1004538..1004540,1004544..1004549, 1004556..1004558,1004562..1004564,1004628..1004630, 1004634..1004639,1004646..1004675,1004679..1004690, 1004718..1004720,1004733..1004738,1004745..1004750)) /locus_tag="Alide_0946" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1004373..1004390,1004628..1004672)) /locus_tag="Alide_0946" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1004289..1004291,1004325..1004327, 1004334..1004336,1004370..1004372,1004568..1004570, 1004628..1004630)) /locus_tag="Alide_0946" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1004442..1004444,1004454..1004459, 1004475..1004513)) /locus_tag="Alide_0946" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1005037..1005918) /locus_tag="Alide_0947" /db_xref="GeneID:10102978" CDS complement(1005037..1005918) /locus_tag="Alide_0947" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ctt:CtCNB1_0788 sn-glycerol-3-phosphate transport systempermease protein UgpA" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125600.1" /db_xref="GI:319761663" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10102978" /translation="MEKRVLFRSAWLPWVLIAPQLAIIGVFFFWPAGQAVLQSFQMED AFGMSREWVGLDNFRQLLTNPDYLGAFQRTALFSVLVAGTGIVVSLALAIYADRIVRF AMVYKTLLIVPYAVAPVIAGVLWVFLFSPSIGVVTHYLGRLGYQWNHLMNENQAMTLI VLASVWKQISYNFLFFLAGLQSIPRALIEAASIDGAGPWRRFWNIQLPLLSPTSFFLL VINIVYAFFDTFGIIDAATQGGPGQSTSILVYKVYLDGFKALDLGGSAAQSVILMCIV VVLTVIQFRYVEKKVQY" misc_feature complement(1005052..1005918) /locus_tag="Alide_0947" /note="ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]; Region: LplB; COG4209" /db_xref="CDD:33938" misc_feature complement(1005040..1005876) /locus_tag="Alide_0947" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene complement(1005989..1007302) /locus_tag="Alide_0948" /db_xref="GeneID:10102979" CDS complement(1005989..1007302) /locus_tag="Alide_0948" /inference="protein motif:PFAM:PF01547" /note="PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_0862 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_004125601.1" /db_xref="GI:319761664" /db_xref="GO:0005215" /db_xref="InterPro:IPR006059" /db_xref="GeneID:10102979" /translation="MQFKQLGLAACMFATGLAAQAQTEIQWWHSMTAVNNEWVNDLAK QFNESQKDYKVTPIFKGSYDESMTAAIAAFRSGNQPHILQVFEVGTATMMASRGASVP VAKVMKDAGADFNPAAYIPAVAAYYTAPDGQILSLPFNSSTTVAYYNKDAFKKAGLDP DKLPTTWPEVFEAAKKLKASGHSCPMTLAWQGWTQLESFSAWHNVEFATHKNGLAADG YKARLKINSPLHVRHIDNLAQAAKNGEFVYKGRGSTAQASFTAGECAMIQTSSGFYGD VAKNAKFAYGIAPLPYYPDVKGAPQNTVIGGASLWVMSGKKPEEYKGVAKFFEFLSQT KVQAASHQRTGYLPITMAAFDLTDKSGFYQKHPGTDVAVNQMIRKVTDNSRGIRLGNY VQVRAIEDEELEQVWAGKKSGKQALDAIVTRGNELLTRFERSYKK" sig_peptide complement(1007237..1007302) /locus_tag="Alide_0948" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.961 at residue 22" misc_feature complement(1006010..1007287) /locus_tag="Alide_0948" /note="ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653" /db_xref="CDD:31839" misc_feature complement(1005995..1007278) /locus_tag="Alide_0948" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1007634..1008863 /locus_tag="Alide_0949" /db_xref="GeneID:10102980" CDS 1007634..1008863 /locus_tag="Alide_0949" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: ajs:Ajs_0863 D-3-phosphoglycerate dehydrogenase" /codon_start=1 /transl_table=11 /product="d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein" /protein_id="YP_004125602.1" /db_xref="GI:319761665" /db_xref="GO:0005215" /db_xref="GO:0016597" /db_xref="GO:0048037" /db_xref="GO:0051287" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="InterPro:IPR018483" /db_xref="GeneID:10102980" /translation="MPKTSLDKSKIKFLLLEGVHPSAVQVLRAAGYTQVEVLPGALEG EELRRKIADVHFLGIRSRTQLTADVFAHAHKLVAVGCFCIGTNQVDLDAARERGIAVF NAPYSNTRSVAELVLAEAILLLRGVPEKNAAAHRGGWLKSATNAYEIRGKTLGIVGYG SIGTQLSVLAESLGMQVIFHDVVAKLPLGNARQAPGLQELLAQSDIVSLHVPELPSTQ WMIGADQIAAMKPGGILINASRGTVVEIEPLAQAIRDKKLLGAAVDVFPVEPKSNKDE FVSPLRGLDNVILTPHIGGSTMEAQANIGLEVAEKLVRYSDNGTSTSSVNFPEVALPA HPGKHRLLHIHRNVPGVLSQINSILSDNQINIAGQYLQTNEAVGYVVIDLDARSSDLA LEKLAQVPGTIRSRVLF" misc_feature 1007634..1008860 /locus_tag="Alide_0949" /note="D-3-phosphoglycerate dehydrogenase; Provisional; Region: PRK11790" /db_xref="CDD:183316" misc_feature 1008006..1008515 /locus_tag="Alide_0949" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1008651..1008857 /locus_tag="Alide_0949" /note="C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria; Region: ACT_3PGDH; cd04901" /db_xref="CDD:153173" misc_feature order(1008666..1008668,1008672..1008674,1008726..1008728) /locus_tag="Alide_0949" /note="L-serine binding site [chemical binding]; other site" /db_xref="CDD:153173" misc_feature order(1008672..1008674,1008678..1008680,1008687..1008692, 1008699..1008701,1008726..1008728,1008732..1008752) /locus_tag="Alide_0949" /note="ACT domain interface; other site" /db_xref="CDD:153173" gene 1008985..1012905 /locus_tag="Alide_0950" /db_xref="GeneID:10102981" CDS 1008985..1012905 /locus_tag="Alide_0950" /inference="protein motif:PFAM:PF01565" /note="PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dia:Dtpsy_0793 FAD linked oxidase domain protein" /codon_start=1 /transl_table=11 /product="fad linked oxidase domain protein" /protein_id="YP_004125603.1" /db_xref="GI:319761666" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="InterPro:IPR016166" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="GeneID:10102981" /translation="MNAPIALAALQAQGSEPVRLREIPYNYTSFSDREIVIRLLGAQA WDVLDHLRRERRTGRSARMLYEVLGDIWAVQRNPYLQDDLIHNPQRRKMLVDAMRHRM GEIEKRRTPQEDPERDRRVAQLVEAANRAIAEFDATLVEVAGMRKLVARRLARHTAKD NIKFDGLSRVSHVTDATDWRVEFPFVVLTPDTEGETAALVKECIELDLTIIPRGGGTG YTGGAIPLSWRSAVINTEKLEAMTEVEMVRLPGLAHDVPTVWTEAGVVTQRVADAAER GGYVFAVDPTSIEASCIGGNIAMNAGGKKAVLWGTALDNLASWRMVTPQAQWLEVTRI NHNLGKIHDAEVASFELAYFEADGRTPVRTERLDIPGKSFRKEGLGKDVTDKFLSGLP GVQKEGTDGLITSARWIVHRMPAHTRTVCLEFFGSAKEAVPSIVEIKDFMFAEQKRSG VLLAGLEHLDDRYLKAVGYATKSKKGGGRLPKMVLIGDLVGDDADAVARATAEVVRIA NSRSGEGFTAVSSEARKQFWLDRKRTAAISRHTNAFKINEDVVIPLPRMAEYTDGIER INIELSLRNKLKLCDALQDFFARPDLPCAKQGDALPDAELLGDRVAQAQALVAEVRAL WQGWLDDVARLFPQLQDHSLRASWKTQLRQPLAEIFVGAAFEPLMQEAAAIHKQVLKG RVWVALHMHAGDGNVHTNIPVNSDDYEMLQTAHEAVGRIMQLARSLDGVISGEHGIGI TKLEFLSDEELAPFADYKRRIDPQGHFNRGKLLRNQELQGQVYQALEANSAHNGPRRS LPFADLTNAYTPSFGLMGYESLIMQQSDIGQIVASVKDCLRCGKCKPVCSTHVPRANL LYSPRNKILATSLLAEAFLYEEQTRRGISSHHWQEFEDVADHCTICHRCYNPCPVKID FGDVTMAMRSLLVKMNKKSWRPGNKLAMAMLNATDPRTINLLRAGMVNVGFKAQRLAV DALRSVSKAQTARPPATVGTAPIKEQVIHFVNKKLPGGLPTRTARALLDIENKDYVPI IRDPQTSADSEAVFYFPGCGSERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRG NGLQDKAEKMITDNRVLFHRVANTLNYLDIKTVVVSCGTCYDQLQGYEFDKIFPGSRI IDIHEYLLEKGITLPAGQGGYLYHEPCHNPMKLGDSMKTVRALVGDKVLKSDRCCGES GTLGVSRPDVSTQVRFRKTEEIRKGEAQLRGSGAVGATDNIKILTSCPSCLQGISRYQ DDLQTGLLEADYIVIEMARQILGENWLPEYVQRANAGGIERVLV" misc_feature 1009030..1009395 /locus_tag="Alide_0950" /note="Protein of unknown function (DUF3683); Region: DUF3683; pfam12447" /db_xref="CDD:152881" misc_feature 1009438..>1010685 /locus_tag="Alide_0950" /note="FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277" /db_xref="CDD:30625" misc_feature 1009534..1009980 /locus_tag="Alide_0950" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" misc_feature <1011055..1011300 /locus_tag="Alide_0950" /note="FAD linked oxidases, C-terminal domain; Region: FAD-oxidase_C; pfam02913" /db_xref="CDD:190474" misc_feature 1011472..>1011768 /locus_tag="Alide_0950" /note="Heterodisulfide reductase, subunit C [Energy production and conversion]; Region: HdrC; COG1150" /db_xref="CDD:31344" misc_feature 1011649..1012842 /locus_tag="Alide_0950" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" misc_feature 1012759..1012902 /locus_tag="Alide_0950" /note="Domain of unknown function (DUF3400); Region: DUF3400; pfam11880" /db_xref="CDD:152316" gene 1012902..1013354 /locus_tag="Alide_0951" /db_xref="GeneID:10102982" CDS 1012902..1013354 /locus_tag="Alide_0951" /inference="protein motif:PFAM:PF01230" /note="PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein" /codon_start=1 /transl_table=11 /product="histidine triad (hit) protein" /protein_id="YP_004125604.1" /db_xref="GI:319761667" /db_xref="InterPro:IPR001310" /db_xref="GeneID:10102982" /translation="MTTAPACPLCDADGGALIWRGAQLRVIRAEEAGFPAFYRVIWNA HAAEFSDLTPAERRHCMEAVAIVEQALREQLSPAKINLATLGNVVPHLHWHVIARYEW DSHFPAPVWAPPQRASDGAHEAAVVDRLPALHGLIRERLDRWAAQAGA" misc_feature 1012920..1013219 /locus_tag="Alide_0951" /note="HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the...; Region: HIT_like; cl00228" /db_xref="CDD:193721" misc_feature order(1012980..1012982,1012986..1012988,1013010..1013012, 1013016..1013018,1013166..1013168,1013178..1013180, 1013184..1013186) /locus_tag="Alide_0951" /note="nucleotide binding site/active site [active]" /db_xref="CDD:29586" misc_feature order(1013172..1013174,1013178..1013180,1013184..1013192) /locus_tag="Alide_0951" /note="HIT family signature motif; other site" /db_xref="CDD:29586" misc_feature 1013178..1013180 /locus_tag="Alide_0951" /note="catalytic residue [active]" /db_xref="CDD:29586" gene 1013431..1013850 /locus_tag="Alide_0952" /db_xref="GeneID:10102983" CDS 1013431..1013850 /locus_tag="Alide_0952" /inference="similar to AA sequence:KEGG:Dtpsy_0795" /note="KEGG: dia:Dtpsy_0795 protein of unknown function DUF971" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125605.1" /db_xref="GI:319761668" /db_xref="GeneID:10102983" /translation="MAGLTTGAPTPQSITVHEQSRVLEVVFSDGAHFRIPFELMRVYS PSAEVQGHGPGQQVLQTGKRDVTITALAPVGNYAVQPSFSDGHDSGIFSWNYLYELGR DAQALWADYLDRLAAAGLDRDAPMAPKARGGHGCGGH" misc_feature 1013470..1013724 /locus_tag="Alide_0952" /note="Protein of unknown function (DUF971); Region: DUF971; cl01414" /db_xref="CDD:194131" gene 1013928..1014659 /locus_tag="Alide_0953" /db_xref="GeneID:10102984" CDS 1013928..1014659 /locus_tag="Alide_0953" /inference="protein motif:TFAM:TIGR01934" /note="KEGG: dia:Dtpsy_0796 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase" /codon_start=1 /transl_table=11 /product="ubiquinone/menaquinone biosynthesis methyltransferase" /protein_id="YP_004125606.1" /db_xref="GI:319761669" /db_xref="GO:0008168" /db_xref="InterPro:IPR004033" /db_xref="GeneID:10102984" /translation="MSTTHFGFQSVREEDKARHVRGVFDSVAPKYDLMNDLMSAGLHR AWKAYTVMVANLREGDQVLDIAGGTGDLSLAFSRKVGTTGRVVHTDINEAMLRVGRDR LIDKGVMLPTLVCDAEHLPFPDNHFDLVSVAFGLRNMTHKDAALREMCRVLKARGRLL VLEFSKVAKPLERAYDWYSFQVLPRLGKLVAGDDSSYRYLAESIRMHPGQEELKSLMQ QSGFGHVDYHNMTGGIVALHVGIKC" misc_feature 1013973..1014653 /locus_tag="Alide_0953" /note="ubiE/COQ5 methyltransferase family; Region: Ubie_methyltran; pfam01209" /db_xref="CDD:110227" misc_feature 1014111..1014410 /locus_tag="Alide_0953" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(1014120..1014140,1014195..1014200,1014270..1014278, 1014321..1014323) /locus_tag="Alide_0953" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" misc_feature <1014273..1014653 /locus_tag="Alide_0953" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1014701..1015699 /locus_tag="Alide_0954" /db_xref="GeneID:10102985" CDS 1014701..1015699 /locus_tag="Alide_0954" /inference="protein motif:PFAM:PF04280" /note="PFAM: import inner membrane translocase subunit Tim44; KEGG: dia:Dtpsy_0797 import inner membrane translocase subunit Tim44" /codon_start=1 /transl_table=11 /product="import inner membrane translocase subunit tim44" /protein_id="YP_004125607.1" /db_xref="GI:319761670" /db_xref="GO:0015450" /db_xref="InterPro:IPR007379" /db_xref="GeneID:10102985" /translation="MKLWSVLLVAMLALVHLDADARRLGGGKSMGRQSSNVTQREAGN PPAAPAAPVQNAANSAPAKPAAAPNAAAAAPKKPWGAMLGGLAAGLGLAWLAHSLGLG AEFGQFLLIALLALAVMVVIGMVMRSRRPAASQEGAAPFAFQGAGAATPAEAQAPRQY SPDKVGNDASARPWESTGMAYQAPATGGGSMIGSALAGSQNWGVPADFDVAGFLAAAK RNFTTLQAAWDRSDIATLRSMMTDGMVDEIRAQLSERESHRGGEQPNHTDVVMLEAQL LGIEDLGDGYMASVEFSGMIREEPSAGPSPFREVWNMTKPKNGSVGWLVAGVQALQ" misc_feature 1015283..1015690 /locus_tag="Alide_0954" /note="Tim44-like domain; Region: Tim44; cl09208" /db_xref="CDD:195818" gene 1015774..1016334 /locus_tag="Alide_0955" /db_xref="GeneID:10102986" CDS 1015774..1016334 /locus_tag="Alide_0955" /inference="similar to AA sequence:KEGG:Dtpsy_0798" /note="KEGG: dia:Dtpsy_0798 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125608.1" /db_xref="GI:319761671" /db_xref="GeneID:10102986" /translation="MATQSPFSFLDGFFERIAAGPQPPAWLVHELQHRLVLFLNHVLM QEREAMERLARQRGRVARVQWRVYSMALQVTPAGLLDLAPQGALPDLRLEVSETSPLS LAKGALRGDKPTIRIEGDVQLAGEINWLVDHVRWDVEEDLARVIGDAPARAVAGMAGR VAGALRRFVGGRMASGLDGTSDRPTS" misc_feature 1015888..1016145 /locus_tag="Alide_0955" /note="SCP-2 sterol transfer family; Region: SCP2; cl01225" /db_xref="CDD:194071" gene 1016331..1017896 /locus_tag="Alide_0956" /db_xref="GeneID:10102987" CDS 1016331..1017896 /locus_tag="Alide_0956" /inference="protein motif:TFAM:TIGR01982" /note="KEGG: dia:Dtpsy_0799 ubiquinone biosynthesis protein UbiB; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain-containing protein" /codon_start=1 /transl_table=11 /product="2-polyprenylphenol 6-hydroxylase" /protein_id="YP_004125609.1" /db_xref="GI:319761672" /db_xref="InterPro:IPR004147" /db_xref="InterPro:IPR010232" /db_xref="GeneID:10102987" /translation="MSRFFRGLTIVWVVLRYGLDELVLSSFNRPWLRVFTRVITLGRN LDAPRGQRLREALERLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPGIAI ATIERSFRRPIGEIFVSFEREPVASASIAQVHFAVIRDRQGIERDVAVKVLRPGMLPV IDKDLALMRMMAGWVEGLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNM EGLDLVLIPEVFWDFCHADVAVMERMNGVPINQVERLRAAGVDIPKLARDGVTIFFTQ VFRDGFFHADMHPGNIQVSLDQSTFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRD YKRVAELHIESGWVPASTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRF QVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLEQLGPQRMWRELRA EAPHYAKILPDLPRLLHDFLRQRPHDGRADLQELLAAQKRTNRLLQSLLYGGLGFVLG LLAMQLFVRIRFF" misc_feature 1016331..1017821 /locus_tag="Alide_0956" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" misc_feature 1016340..1017665 /locus_tag="Alide_0956" /note="2-polyprenylphenol 6-hydroxylase; Region: UbiB; TIGR01982" /db_xref="CDD:162638" gene 1017948..1019399 /locus_tag="Alide_0957" /db_xref="GeneID:10102988" CDS 1017948..1019399 /locus_tag="Alide_0957" /inference="protein motif:PFAM:PF00474" /note="PFAM: Na+/solute symporter; KEGG: dia:Dtpsy_0800 Na+/solute symporter" /codon_start=1 /transl_table=11 /product="na+/solute symporter" /protein_id="YP_004125610.1" /db_xref="GI:319761673" /db_xref="GO:0005215" /db_xref="InterPro:IPR001734" /db_xref="InterPro:IPR018212" /db_xref="GeneID:10102988" /translation="MLLFMVIAYLFVTIGIGLWAAQRVKNTADFAIAGRHLPMYMIIT TTFATWFGSEIVLGVPAKFIQGGLNAVVEDPFGAGMCLILVGLFFAAKLYRMTLLTIS DYYRERYGRAVEVICSLIIMLSYLGWVSAQVTALGLVFNLLSGGTVSIPWGMAIGVLS ILVYTLWGGMWSVAVTDFIQMIILVLGLVVLSWFAADMAGGAGKVIDLVTSRDMLRFW PEPTWHEVLFFFGAAITMMLGSIPQQDVFQRVMSANTERAATHGTVIGGSAYILFAFV PMFLVASALLIMPEQAAQLLREDPQKVLPTLVMERMPLLMQVLFFGALLSAIKSCASA TLLAPSVTFTENIWRQFRPEYISDREKLLAMRISVLVFAAGVLFYSIKMEGTPIYELV SSAYQVPLVGAFVPLVFGLYWKRANTQGAVCAVVMGIGVWLVFMLTPALHEAFPQQLA GLLSAVFGMVAGSLTPQLVRNTRAPHHRVVGVE" misc_feature 1017948..1019339 /locus_tag="Alide_0957" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" gene 1019462..1019743 /locus_tag="Alide_0958" /db_xref="GeneID:10102989" CDS 1019462..1019743 /locus_tag="Alide_0958" /inference="protein motif:TFAM:TIGR02605" /note="KEGG: dia:Dtpsy_0801 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB" /codon_start=1 /transl_table=11 /product="regulatory protein, fmdb family" /protein_id="YP_004125611.1" /db_xref="GI:319761674" /db_xref="InterPro:IPR013429" /db_xref="GeneID:10102989" /translation="MPIYAYRCGTCGHAKDVLQKISDAPLTVCPACGAQAFAKQVTAA GFQLKGSGWYVTDFRGGANGAASAPVAQDAPKTEAASAAPASPASSSDA" misc_feature 1019462..1019665 /locus_tag="Alide_0958" /note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS; cl00993" /db_xref="CDD:197419" gene 1019757..1020380 /locus_tag="Alide_0959" /db_xref="GeneID:10102990" CDS 1019757..1020380 /locus_tag="Alide_0959" /inference="protein motif:PFAM:PF04367" /note="PFAM: protein of unknown function DUF502; KEGG: dia:Dtpsy_0802 protein of unknown function DUF502" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125612.1" /db_xref="GI:319761675" /db_xref="InterPro:IPR007462" /db_xref="GeneID:10102990" /translation="MAALRKWLFTGLLVIVPGVITAWVLSWIVSTLDQTLQILPGAWH PDRLLGFHIPGFGVLLTLAILLVVGAFASNFAGRKMVSWGDALVSRIPVVRSIYSSVK QVSDTLFSESGNAFRTAVLVQWPRDGVWTVAFVTGSPSGEVAAYLRDEFVSVYVPTTP NPTSGYFVLMRRSDCIELDMSIDAALKYIVSMGVVAPPDLVAHEPGK" misc_feature 1019757..1020371 /locus_tag="Alide_0959" /note="Protein of unknown function (DUF502); Region: DUF502; cl01107" /db_xref="CDD:194037" gene 1020481..1022280 /locus_tag="Alide_0960" /db_xref="GeneID:10102991" CDS 1020481..1022280 /locus_tag="Alide_0960" /inference="protein motif:TFAM:TIGR00459" /note="KEGG: dia:Dtpsy_0803 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein" /codon_start=1 /transl_table=11 /product="aspartyl-tRNA synthetase" /protein_id="YP_004125613.1" /db_xref="GI:319761676" /db_xref="GO:0005524" /db_xref="GO:0016874" /db_xref="InterPro:IPR002312" /db_xref="InterPro:IPR004115" /db_xref="InterPro:IPR004364" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR004524" /db_xref="InterPro:IPR006195" /db_xref="GeneID:10102991" /translation="MAMRSHYCGLVTEALMGQTVSLCGWVNRRRDHGGVIFIDLRDRE GYVQVVCDPDRPEMFKVAEDIRNEFCVRVQGVVRARPAGTTNDKLKSGQIEVLCHELD VLNPSVTPPFQMDDDNLSETTRLTHRVMDLRRPAMQRNLMLRYKTAIQVRNFLDKEGF VDIETPMLGKSTPEGARDYLVPSRVHDGQFFALPQSPQLYKQMLMVAGYDRYYQITKC FRDEDLRADRQPEFTQIDCETSFLNEEEIRAIFQRMIVEVFKQQLDVDLGEFPTMAYA EAMHRFGSDKPDLRVKLEFTELTDVMRDVDFKVFSTPATTKGGRVVALRVPGGAAISR GEIDQYTEFVKIYGAKGLAWIKVNEAAKGRDGLQSPIVKNIHDAAIAEILKRTGAQDG DLVFFGADKEKIVNDSIGALRLKVGHSEFGRQNGLFENRWAPLWVVDFPMFEHDEDED RWVAVHHPFTSPKDGHEDLMDTDPGKCIAKAYDMVLNGWELGGGSVRIHRADVQSKVF SALKIGPEDARAKFGYLLDALQYGAPPHGGLAFGLDRLITLMTGAESIRDVIAFPKTQ RAQDLLTQAPSPVDEKQLRELHIRLRNPVPAAG" misc_feature 1020481..1022262 /locus_tag="Alide_0960" /note="aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476" /db_xref="CDD:179042" misc_feature 1020490..1020891 /locus_tag="Alide_0960" /note="EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317" /db_xref="CDD:58587" misc_feature order(1020490..1020492,1020499..1020501,1020553..1020555, 1020607..1020609,1020793..1020795,1020799..1020804) /locus_tag="Alide_0960" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58587" misc_feature order(1020562..1020564,1020568..1020576,1020589..1020591, 1020622..1020624,1020676..1020678,1020718..1020720, 1020736..1020738,1020763..1020765,1020811..1020813) /locus_tag="Alide_0960" /note="anticodon binding site; other site" /db_xref="CDD:58587" misc_feature 1020901..>1021329 /locus_tag="Alide_0960" /note="Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the...; Region: AspRS_core; cd00777" /db_xref="CDD:73228" misc_feature order(1020910..1020918,1020925..1020927,1020934..1020939, 1020946..1020948,1020955..1020966,1020970..1020990, 1021009..1021011,1021018..1021032,1021042..1021053, 1021096..1021101,1021108..1021113,1021129..1021131, 1021141..1021143,1021171..1021173,1021201..1021203, 1021216..1021218) /locus_tag="Alide_0960" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:73228" misc_feature 1020976..1020990 /locus_tag="Alide_0960" /note="motif 1; other site" /db_xref="CDD:73228" misc_feature order(1021000..1021008,1021066..1021068,1021072..1021074, 1021081..1021083,1021138..1021140,1021144..1021146, 1021159..1021167,1021174..1021176,1021180..1021182) /locus_tag="Alide_0960" /note="active site" /db_xref="CDD:73228" misc_feature 1021135..1021146 /locus_tag="Alide_0960" /note="motif 2; other site" /db_xref="CDD:73228" misc_feature 1021429..1021704 /locus_tag="Alide_0960" /note="GAD domain; Region: GAD; pfam02938" /db_xref="CDD:145868" misc_feature <1021774..1022181 /locus_tag="Alide_0960" /note="Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the...; Region: AspRS_core; cd00777" /db_xref="CDD:73228" misc_feature 1022104..1022115 /locus_tag="Alide_0960" /note="motif 3; other site" /db_xref="CDD:73228" gene 1022342..1022788 /locus_tag="Alide_0961" /db_xref="GeneID:10102992" CDS 1022342..1022788 /locus_tag="Alide_0961" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_0805 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="nudix hydrolase" /protein_id="YP_004125614.1" /db_xref="GI:319761677" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR003564" /db_xref="GeneID:10102992" /translation="MYKIPESVLVVIHTPDLQVLLIRRADAAEDFWQSVTGSKDSLAE DFAATAAREVREETGIDAAAPGCVLRDWGLENVYAIYPQWRHRYASGVYLNTERVFGL CVPPGTPVALNPREHTSYAWMGWREAADRCFSPSNAEAILWLPRFV" misc_feature 1022354..1022767 /locus_tag="Alide_0961" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or...; Region: Nudix_Hydrolase; cl00447" /db_xref="CDD:189099" misc_feature order(1022450..1022458,1022489..1022515) /locus_tag="Alide_0961" /note="nudix motif; other site" /db_xref="CDD:72880" gene 1022791..1023552 /locus_tag="Alide_0962" /db_xref="GeneID:10102993" CDS 1022791..1023552 /locus_tag="Alide_0962" /inference="protein motif:PFAM:PF03372" /note="PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dia:Dtpsy_0806 endonuclease/exonuclease/phosphatase" /codon_start=1 /transl_table=11 /product="endonuclease/exonuclease/phosphatase" /protein_id="YP_004125615.1" /db_xref="GI:319761678" /db_xref="InterPro:IPR005135" /db_xref="GeneID:10102993" /translation="MSPIELPAEHSGILRVATYNIHKGVQGLGPARRLEIHNLGLAVE QLDADIVCLQEVRKMNHKEAAYFKRWPRVPQAEYLAPEGYAAVYRTNAYTRHGEHGNA LLTRWPVVGHQHEDISDHRFEQRGLLHVEVEVQGRCVHAIVVHLGLIPGSRVRQVERL QRFIAREVPAGAPLVVAGDFNDWGLQIKHMLAGFGLYEYDDAPQAFTYPARLPLVQLD HVYVRGLTPLGLQVPRGRIWWRMSDHLPLIAEFRL" misc_feature 1022836..1023543 /locus_tag="Alide_0962" /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490" /db_xref="CDD:197411" misc_feature order(1022848..1022850,1022953..1022955,1023223..1023225, 1023325..1023327,1023331..1023333,1023442..1023444, 1023517..1023522) /locus_tag="Alide_0962" /note="putative catalytic site [active]" /db_xref="CDD:197306" misc_feature order(1022953..1022955,1023517..1023519) /locus_tag="Alide_0962" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197306" misc_feature order(1023223..1023225,1023331..1023333,1023520..1023522) /locus_tag="Alide_0962" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197306" gene 1023695..1024924 /locus_tag="Alide_0963" /db_xref="GeneID:10102994" CDS 1023695..1024924 /locus_tag="Alide_0963" /inference="similar to AA sequence:KEGG:Dtpsy_0807" /note="KEGG: dia:Dtpsy_0807 phospholipase D/transphosphatidylase" /codon_start=1 /transl_table=11 /product="phospholipase d/transphosphatidylase" /protein_id="YP_004125616.1" /db_xref="GI:319761679" /db_xref="InterPro:IPR001736" /db_xref="GeneID:10102994" /translation="MATPARQTKTATDHHIQLLQGTQEFFPALIADMDAALSDIQFET YIFDCTGSGGLVAEALMRAAGRGVRVHLVVDGLGTGRLPEPWRSRMMAAGVRIQVYAP LGPLGLLLPTRWRRLHRKLCVIDGCVLFCGGINVLDDFHDPNHGELAAPRFDFAVRAV GSLVQQAGDTMEQLWWRMRAVRDVRHRRLSLALADLRAASAARVSARWAGAGGRGMRA ALLLRDNLRHRTRIERAYLRAIAQARREIIIANAYFVPGGKLRRALMLAARRGVRVRL LLQGRYEYFMQYHAARPVYGALLAAGVEIYEYEPSFLHAKVAVIDAQSRRAWATVGSS NLDPLSLLLAREANVVVRDASFAQELRQRLVRAMKNGGRPLDPHEYAARPWRARVLDR IAFATMRAALWVTGNRY" misc_feature 1023761..1024219 /locus_tag="Alide_0963" /note="Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins; Region: PLDc_CLS_1; cd09110" /db_xref="CDD:197209" misc_feature order(1024046..1024048,1024052..1024054,1024091..1024093, 1024097..1024099,1024154..1024156) /locus_tag="Alide_0963" /note="putative active site [active]" /db_xref="CDD:197209" misc_feature 1024046..1024048 /locus_tag="Alide_0963" /note="catalytic site [active]" /db_xref="CDD:197209" misc_feature 1024364..1024879 /locus_tag="Alide_0963" /note="Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239" /db_xref="CDD:197447" misc_feature order(1024634..1024636,1024640..1024642,1024691..1024693, 1024697..1024699,1024730..1024732) /locus_tag="Alide_0963" /note="putative active site [active]" /db_xref="CDD:197200" misc_feature 1024634..1024636 /locus_tag="Alide_0963" /note="catalytic site [active]" /db_xref="CDD:197200" gene 1025029..1025754 /locus_tag="Alide_0964" /db_xref="GeneID:10102995" CDS 1025029..1025754 /locus_tag="Alide_0964" /EC_number="3.5.4.16" /inference="protein motif:PRIAM:3.5.4.16" /note="KEGG: dia:Dtpsy_0808 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase" /codon_start=1 /transl_table=11 /product="gtp cyclohydrolase i" /protein_id="YP_004125617.1" /db_xref="GI:319761680" /db_xref="InterPro:IPR020602" /db_xref="GeneID:10102995" /translation="MSSEPAAEPNAPPSDEGTPVSVKIRERLAAARRRFHANDNIAEF IEPGELELLLDEVEARMQGVLDSMVIDTAGDHNTQSTARRVAKMYLNEVFKGRYVHPP TITEFPNAEHLNELMIVGPITVRSACSHHFCPVIGKIWIGVLPNEHTNVIGLSKYARL VDWVMGRPQIQEEAVVQLADLIMEKTQPDGLAIVMEASHFCMSWRGVREMDSKMINSV MRGVFLTNSTLRREFLALIPGRN" misc_feature 1025188..1025739 /locus_tag="Alide_0964" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" misc_feature order(1025431..1025433,1025437..1025439,1025611..1025613, 1025680..1025682) /locus_tag="Alide_0964" /note="active site" /db_xref="CDD:29764" gene 1025756..1026178 /locus_tag="Alide_0965" /db_xref="GeneID:10102996" CDS 1025756..1026178 /locus_tag="Alide_0965" /inference="protein motif:PFAM:PF04940" /note="PFAM: BLUF domain protein; KEGG: dia:Dtpsy_0809 BLUF domain protein" /codon_start=1 /transl_table=11 /product="bluf domain protein" /protein_id="YP_004125618.1" /db_xref="GI:319761681" /db_xref="InterPro:IPR007024" /db_xref="GeneID:10102996" /translation="MLVRLLYVSRAVDTSPAAIEAILTQSRLHNPASGITGVLCYGGG IFLQAIEGGRTAVSELYGHIQRDERHKDVELLAFEEICERRFGGWTMGHVNLAKLNHS IVLKYSEKPEFDPYMTSGKVSFALLEELMATASIIGRA" misc_feature 1025759..1026034 /locus_tag="Alide_0965" /note="Sensors of blue-light using FAD; Region: BLUF; pfam04940" /db_xref="CDD:147220" gene 1026400..1027281 /locus_tag="Alide_0966" /db_xref="GeneID:10102997" CDS 1026400..1027281 /locus_tag="Alide_0966" /inference="protein motif:PFAM:PF00892" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: dia:Dtpsy_0810 protein of unknown function DUF6 transmembrane" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125619.1" /db_xref="GI:319761682" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10102997" /translation="MSLNAFALIIVAGLIHAIWNIAAKKAGGDARFAFFTAVLMMLVW APLGWWLGRDAVPLWGAREWGIVALSGVLHVLYYVVLLRGYRKADLTVVYPLARGTGP LLSALVAVTLLGERLSALGAFGIAGVVGGVFLIAGGPGLLRAAHDPQARRRVRKGMLY GVLTGVFIAGYTVVDGYAVKAMLLSPILVDYMGNFVRVLVLAPVALRDRAELTRLWAA QWRFALLVAAVSPVAYVLVLFAMQTAPLSHVAPAREVSMLFAALIGGHLLGEGDRAAR LAGALLIAAGVAALGLG" misc_feature 1026412..1027191 /locus_tag="Alide_0966" /note="phosphonate utilization associated putative membrane protein; Region: phn_DUF6; TIGR03340" /db_xref="CDD:163219" gene 1027311..1029131 /locus_tag="Alide_0967" /db_xref="GeneID:10102998" CDS 1027311..1029131 /locus_tag="Alide_0967" /inference="protein motif:PFAM:PF02518" /note="KEGG: dar:Daro_2490 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004125620.1" /db_xref="GI:319761683" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:10102998" /translation="MKRGVFASRRVLGVLLLCAAAARAEVRLGALAVLEGEDTRRQWQ PLADGLQRALGVPVRLQALAPAALEQAVARGALDFVVTNPGHYVALEARHGATRIATR SAGAQGDPAHAVGSAVVVRADAPGPPATLAALRGWRVAAVAEEAFGGYQLAAVEWLRQ GVDAEAGGLRRAFTGYPMQRVAQAVLSGEADAGVLRTCLLELWERDGVVPAGALRVVP ADDDGGTGAPPGCRASTPLYPGWAFAALAGTPPELSRQVLLALLAQPGESGALDGVWT VPADYQRVHDALRLLQVEPYAFLRETRLQALLHRYWGVAAALLALALVGVAYLLRVEV LVKRRTAELTHSLHERERLARQNAQHQEALGHLSRLSILGELSAMLAHELNHPLATIA NYAAGLRRRAARGDLAPQDLERALRDIAHESERAARVIGGVRALARKRVPDRVAIDPR ALVGEALTLLGGWQPQAVRVACAPGAEALRVRGDAPQLLQVLLNLLQNARDVHRAAGC EGEPIGVEIVPEDGCLALAVRDHGPPLSPEALALLFTPFHTTKPDGLGLGLSISRGIA EAHGGALHARPVPPHEGGGMRMVLLLPLAQPEAADGDTPA" misc_feature 1027419..1028156 /locus_tag="Alide_0967" /note="ABC transporter, phosphonate, periplasmic substrate-binding protein; Region: Phosphonate-bd; pfam12974" /db_xref="CDD:193447" misc_feature 1027419..1028096 /locus_tag="Alide_0967" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature 1028427..1028624 /locus_tag="Alide_0967" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1028436..1028438,1028448..1028450,1028460..1028462, 1028469..1028471,1028481..1028483,1028490..1028492, 1028553..1028555,1028565..1028567,1028574..1028576, 1028586..1028588,1028595..1028597,1028607..1028609) /locus_tag="Alide_0967" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1028454..1028456 /locus_tag="Alide_0967" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1028820..1029086 /locus_tag="Alide_0967" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1028820..1028822,1028892..1028894,1028898..1028900, 1028904..1028906,1028910..1028915,1028976..1028987, 1029033..1029035,1029039..1029041,1029063..1029068, 1029072..1029074) /locus_tag="Alide_0967" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature order(1028904..1028906,1028910..1028912,1028976..1028978, 1028982..1028984) /locus_tag="Alide_0967" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1029128..1029757 /locus_tag="Alide_0968" /db_xref="GeneID:10102999" CDS 1029128..1029757 /locus_tag="Alide_0968" /inference="protein motif:PFAM:PF00072" /note="KEGG: dar:Daro_2491 LuxR response regulator receiver; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004125621.1" /db_xref="GI:319761684" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:10102999" /translation="MTDLPPPCIHVVDDDENFLRSLLFMIEGLGFDAVGYPSAEAFAQ ADPAPAPQGGCLLLDIRMPRMSGLELQRRLQRPDLPIVFMTGHGDVDQAVQALRGGAL DFLQKPFREQALLDALNRAVAASAQAQRRQARQAQALQVLQRLSPRERDVARLLALGR SNKEVARELDISDHTVHVHRQSITRKTGSGHAADLARLILRAAPQELEE" misc_feature 1029146..1029697 /locus_tag="Alide_0968" /note="Response regulator [Signal transduction mechanisms]; Region: TtrR; COG4566" /db_xref="CDD:34204" misc_feature 1029158..1029484 /locus_tag="Alide_0968" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1029164..1029169,1029302..1029304,1029326..1029328, 1029380..1029382,1029437..1029439,1029446..1029451) /locus_tag="Alide_0968" /note="active site" /db_xref="CDD:29071" misc_feature 1029302..1029304 /locus_tag="Alide_0968" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1029311..1029316,1029320..1029328) /locus_tag="Alide_0968" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1029446..1029454 /locus_tag="Alide_0968" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1029566..>1029691 /locus_tag="Alide_0968" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(1029566..1029571,1029608..1029616,1029638..1029643, 1029647..1029652,1029656..1029670) /locus_tag="Alide_0968" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" gene complement(1029866..1030876) /locus_tag="Alide_0969" /db_xref="GeneID:10103000" CDS complement(1029866..1030876) /locus_tag="Alide_0969" /inference="protein motif:PFAM:PF00034" /note="PFAM: cytochrome c class I; KEGG: azo:azo2669 cytochrome c family protein" /codon_start=1 /transl_table=11 /product="cytochrome c class i" /protein_id="YP_004125622.1" /db_xref="GI:319761685" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR003088" /db_xref="InterPro:IPR009056" /db_xref="GeneID:10103000" /translation="MTHSTMTTSLRWLAAAAALAAGATLAADAPATVQLAGRAVPEID KLPPGHYKELVQYGHELTTRTFAHIGPEVGDVRRRLAGNNLACASCHQQAATKPFAMP WTGVAATFPQYRGREDEVSTVEERVNGCMERSMNGKPLPLDSREMKAFVTYIAFLSKG IPVGANVEGAGMVQSKMPNRRANLEAGAKVYEAKCAVCHGSDGQGVRAGQPGDAQGYV FPPLWGKDTFNNGAGMNRLAMATRFVKHNMPQGTSFDAPQLTDDEAYDVSAFMLSKPR PEKANLEADFPARWNKPVDSAFPPYMLGAPADQHRYGPLPPLAEKQRQMAEQIKAQGA AR" sig_peptide complement(1030796..1030876) /locus_tag="Alide_0969" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.981 at residue 27" misc_feature complement(1029935..1030756) /locus_tag="Alide_0969" /note="Cytochrome c [Energy production and conversion]; Region: COG3258" /db_xref="CDD:33069" misc_feature complement(1030058..1030324) /locus_tag="Alide_0969" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 1031012..1031869 /locus_tag="Alide_0970" /db_xref="GeneID:10103001" CDS 1031012..1031869 /locus_tag="Alide_0970" /inference="similar to AA sequence:KEGG:Aave_3628" /note="KEGG: aav:Aave_3628 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125623.1" /db_xref="GI:319761686" /db_xref="GeneID:10103001" /translation="MASHSPADPRAGAAIIVGCDFSSSPTPRKPIVLALGALEGPRVA LHGLRRFDTLAAFGQWLALPGDWVGGFDLPFGLPRALVAELGWPLAWPECMRHYRSLA RAQIREAFAAFCAARPAGAKFAHRATDGPAGSSPSMKWVNPPVAYMLHAGVPLLLDAG VHLPGLHDGDARRVALEAYPGLLARELIGRRSYKSDDPRRRTPERLAARADLLAGLER GATRLGLRLAAAPPLRDALLQDASGDGLDAALCLVQAGWALRRRRLGDARYGLPADMD PLEGWIVTA" gene complement(1032021..1032632) /locus_tag="Alide_0971" /db_xref="GeneID:10103002" CDS complement(1032021..1032632) /locus_tag="Alide_0971" /inference="similar to AA sequence:KEGG:Dtpsy_0813" /note="KEGG: dia:Dtpsy_0813 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125624.1" /db_xref="GI:319761687" /db_xref="GeneID:10103002" /translation="MDLLLVLALAAIGVFLLNARQQRRRIALLGQRLRPYQIERLMET LIQGYLRAMGETDAERRTQVLRMLEGNEAQLCEQFERLAADFRHVPAQQARVSLLPVG LPFALQLFPGASFDMREALAIHARGIARSARNDAALAPRDKAFTMTAELLLMQHSCHW FCKSRAVASARVLARHQTPYAQILASVSPETRAEYEKLLRRCE" sig_peptide complement(1032573..1032632) /locus_tag="Alide_0971" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.771) with cleavage site probability 0.752 at residue 20" gene 1032732..1033388 /locus_tag="Alide_0972" /db_xref="GeneID:10103003" CDS 1032732..1033388 /locus_tag="Alide_0972" /inference="protein motif:PFAM:PF01810" /note="PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0885 lysine exporter protein LysE/YggA" /codon_start=1 /transl_table=11 /product="lysine exporter protein (lyse/ygga)" /protein_id="YP_004125625.1" /db_xref="GI:319761688" /db_xref="InterPro:IPR001123" /db_xref="GeneID:10103003" /translation="MPSIETLVAFFGVSALLALTPGPDNIFVLLQSAQRGWRAGMCVV LGLCLGLVGHTAAVALGLAAVFAASSLAFTVLKFCGAAYLAWLAWGALRAPAGAGDAP AQGAAAPGDGPAARGGALRMVGRGVVMNLTNPKVLVFFLAFLPQFADPARGAMARQVM VLGLVFMLATFLVFGAVACFSGAFGALLQRSARARLLLNRVAGLVFLGLALRLATAQR " misc_feature <1033104..1033286 /locus_tag="Alide_0972" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene complement(1033449..1034855) /locus_tag="Alide_0973" /db_xref="GeneID:10103004" CDS complement(1033449..1034855) /locus_tag="Alide_0973" /inference="protein motif:PFAM:PF01425" /note="PFAM: Amidase; KEGG: dia:Dtpsy_0815 amidase" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_004125626.1" /db_xref="GI:319761689" /db_xref="GO:0020037" /db_xref="InterPro:IPR000120" /db_xref="GeneID:10103004" /translation="MSAPHDLSASELLAAYRARSLSPVEATQSVLDHIARWEPHLHAT YLLRPEEALAQARASEARWLRGAPCGPLDGVPATVKDNIATRGDPTPLGTAATPLMPA PADAPPAARLREAGAVIVCKTTMPDYGMLSSGLSSFHALARNPWDLSRGPGGSSAGAG AAAAAGYGPLHVGTDIGGSIRLPAGWCGVFGLKPSLGRIPIDPPYTGRAAGPMTRTVQ DAALMMQVLSAPDARDSMSLPAQPIAWDDFGQGPGRLRGLRIGLLLDAGCGLPVDPQV RAAVEAAARLFEQAGAAIEPMPPFLTRHMLDGMDHFWRMRSFMDLRTLTPGQQGKVLP FIRDWAMSAAGLDGPQVFEASQQFHATRVATVHACAPFDYVLSPVAPMPAFAAELPAP TDDPLRPLEHIAFTVPFNMSEQPAASVNCGYTSCGLPIGLQIAGRRFDDLGVLQMAHA FEQLRGPQRPWPEPPDRH" misc_feature complement(1033461..1034855) /locus_tag="Alide_0973" /note="amidase; Provisional; Region: PRK07042" /db_xref="CDD:180805" misc_feature complement(1033521..1034783) /locus_tag="Alide_0973" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene complement(1034852..1036342) /locus_tag="Alide_0974" /db_xref="GeneID:10103005" CDS complement(1034852..1036342) /locus_tag="Alide_0974" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_004125627.1" /db_xref="GI:319761690" /db_xref="GO:0005215" /db_xref="InterPro:IPR000914" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10103005" /translation="MLTRRTALASGALATAALATPLHALAQGKKDSVTLALVLEPPGL DPTAGAASSIAEVTLYNIYETLTKINPDGSVSPLLAESWEVSPDLRTYTFRLRKGVTF QNGEPFDAAAVKFSFDRAGGDKSTNKDKRTFANLSTQVVDAHTVVLINKDIDPDLLFL LGQATAIIVEPKSAATNASKPVGTGPYQLAAWSRGASIALTAWPGWRQAAQLKVRRAT FRFIPDPAAQVAALLAGDVDAFARVTPRSMAQFKGDPRFQVIVSGSRAKTILAINNAK KPLDDVRVRRAIAAAIDRKAVIQGAADGLGVPIGSHYVPGAFGYVDTTGINPYDPEKA RKLLAEAGVKTPLTLTMTLPPAPYARQGGEVIAAQLAKIGITAKLQNVEWAQWLSGTY GAKNYDLTLISHVEPFDLSNFAKPDYYWGYHSAQFDQLYDKIKNAARPADRARLLGDA QRLLAEDAVHAFLYQPQWVTVANKNLRGLWKDMPVFVNDLSVLSWS" sig_peptide complement(1036268..1036342) /locus_tag="Alide_0974" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.550 at residue 25" misc_feature complement(1034906..1036249) /locus_tag="Alide_0974" /note="The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_6; cd08494" /db_xref="CDD:173859" misc_feature complement(1035086..1036120) /locus_tag="Alide_0974" /note="Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496" /db_xref="CDD:189574" gene complement(1036448..1037314) /locus_tag="Alide_0975" /db_xref="GeneID:10103006" CDS complement(1036448..1037314) /locus_tag="Alide_0975" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_0817 ABC transporter related; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125628.1" /db_xref="GI:319761691" /db_xref="GO:0000166" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103006" /translation="MNTIEKIATSTSSTGATGRFGDETPLLRVRDLRRHYPLPRTRLM GPRAQLAALQGVSFDVAAGRSLGVVGESGSGKSTLARLVMALDTPSAGTVELLGRDLH RLSAPELRAARRDFQMVFQDPYGSLDPRQTVERIVAEPLQALARATRAELRERAAEVL AQVGLRAGDAHKYPHEFSGGQRQRIAIARALITHPRLIVADEPVSALDVSVQAQVLNL LQDLQERLGVTFLLISHDLAVVQHLCDEVLVLHQGIVVERGAPQALFGAPRHPYTQAL VAAVPRLDALMT" misc_feature complement(1036463..1037245) /locus_tag="Alide_0975" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124" /db_xref="CDD:31321" misc_feature complement(1036538..1037239) /locus_tag="Alide_0975" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(1037084..1037107) /locus_tag="Alide_0975" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(1036610..1036612,1036709..1036714, 1036952..1036954,1037081..1037089,1037093..1037098)) /locus_tag="Alide_0975" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(1036952..1036963) /locus_tag="Alide_0975" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(1036757..1036786) /locus_tag="Alide_0975" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(1036709..1036726) /locus_tag="Alide_0975" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(1036691..1036702) /locus_tag="Alide_0975" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(1036604..1036624) /locus_tag="Alide_0975" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature complement(<1036460..1036549) /locus_tag="Alide_0975" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene complement(1037311..1038285) /locus_tag="Alide_0976" /db_xref="GeneID:10103007" CDS complement(1037311..1038285) /locus_tag="Alide_0976" /inference="protein motif:TFAM:TIGR01727" /note="TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dia:Dtpsy_0818 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide abc transporter, atpase subunit" /protein_id="YP_004125629.1" /db_xref="GI:319761692" /db_xref="GO:0005524" /db_xref="GO:0015197" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103007" /translation="MALLEVSGLRISLPTRRGRALAVRGLDFSLARGDTLGLIGESGC GKSLTALALMGLLPEGAQASGSIRFNGQELLGLDDRALCRLRGNRMAMVFQEPMTALN PVHSIGRQVAEPLRLHQGLTARQARAEAVALLERVGIAQAAQRLDAYPHQFSGGQRQR ITIAMALACGPDLLLADEPTTALDVTLQRQILELIRGLVAERGMALVLISHDLGVIAQ TVRRTLVMYGGTVVESGPTRAVFGAQAHPYTQGLFAARPQFGAARVPGARLPTIAGTV PELADLPPGCPFAGRCPRTIAACHAALPPAVALGADHEARCIRLGEAP" misc_feature complement(1037335..1038279) /locus_tag="Alide_0976" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444" /db_xref="CDD:30793" misc_feature complement(1037581..1038279) /locus_tag="Alide_0976" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(1038145..1038168) /locus_tag="Alide_0976" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(1037653..1037655,1037752..1037757, 1038001..1038003,1038142..1038150,1038154..1038159)) /locus_tag="Alide_0976" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(1038001..1038012) /locus_tag="Alide_0976" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(1037800..1037829) /locus_tag="Alide_0976" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(1037752..1037769) /locus_tag="Alide_0976" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(1037734..1037745) /locus_tag="Alide_0976" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(1037647..1037667) /locus_tag="Alide_0976" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature complement(1037404..1037592) /locus_tag="Alide_0976" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene complement(1038559..1039422) /locus_tag="Alide_0977" /db_xref="GeneID:10103008" CDS complement(1038559..1039422) /locus_tag="Alide_0977" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0819 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125630.1" /db_xref="GI:319761693" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103008" /translation="MSALPAPAPAPGFWRRALRHRSLMIGAALTALLLAAAALSLVWT PWPPYDMAMDAVLQPPGAQHLLGTDAYGRDVASLLLVGARSSILVGVIAVGIGLALGA ALGLLAAARGGWVEEAVMRLADFTFAFPALLLAIMLTAVFGPGIVNAIIAIGIFYVPT FARVTRASARAVWAREFILAARACGKGPWRITVEHVLPNIASVLIVQATIQFALAILA EAALSYLGLGTQPPQPSWGRMLAEAQTLMFQAPLLAVWPGVAIALAVLGLNLLGDGLR DLLDPRLARGR" sig_peptide complement(1039300..1039422) /locus_tag="Alide_0977" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.824) with cleavage site probability 0.326 at residue 41" misc_feature complement(1038658..1039083) /locus_tag="Alide_0977" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1038661..1038666,1038673..1038678, 1038706..1038711,1038751..1038756,1038763..1038774, 1038793..1038795,1038802..1038807,1038847..1038849, 1038898..1038900,1038907..1038912,1038922..1038924, 1038928..1038933,1038940..1038942,1038946..1038948, 1038952..1038957,1039006..1039008,1039012..1039017, 1039024..1039053,1039057..1039068)) /locus_tag="Alide_0977" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1038757..1038774,1039006..1039050)) /locus_tag="Alide_0977" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1038676..1038678,1038706..1038708, 1038715..1038717,1038754..1038756,1038970..1038972, 1039006..1039008)) /locus_tag="Alide_0977" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1038826..1038828,1038838..1038843, 1038859..1038897)) /locus_tag="Alide_0977" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1039419..1040381) /locus_tag="Alide_0978" /db_xref="GeneID:10103009" CDS complement(1039419..1040381) /locus_tag="Alide_0978" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0820 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125631.1" /db_xref="GI:319761694" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103009" /translation="MASFILQRLVTLIATLLGASAVVFVVLEVLPGNAAQVLLGPDAA PEAVAALAAQLGLDQPALVRYGQWMAGLLTGRLGDSHAYSAPVLDLIAERLALTVPLA LLSMLLTCALALAAGVYAAARHGRLGDWGVMGLAQVGIAIPNFWFAILLILLFSVKLQ WFSAGGFPGWSVEGGGGILPALKALLLPALALAVVQAAILARITRSAVLDVLREDFVR TARAKGLTRRAALWGHVLRNAMIPVITVMGLQFANLLAGTIVVENVFYLPGLGRLIFQ SIANRDLVVVRNCVMLLAAMVVLVNFVVDLLYAAIDPRVKARGP" misc_feature complement(1039425..1040381) /locus_tag="Alide_0978" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" sig_peptide complement(1040304..1040381) /locus_tag="Alide_0978" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.621) with cleavage site probability 0.207 at residue 26" misc_feature complement(<1039587..1040015) /locus_tag="Alide_0978" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1039593..1039598,1039605..1039616, 1039635..1039637,1039644..1039649,1039689..1039691, 1039740..1039742,1039749..1039754,1039764..1039766, 1039770..1039775,1039782..1039784,1039788..1039790, 1039794..1039799,1039926..1039928,1039932..1039937, 1039944..1039973,1039977..1039988)) /locus_tag="Alide_0978" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1039599..1039616,1039926..1039970)) /locus_tag="Alide_0978" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1039596..1039598,1039866..1039868, 1039926..1039928)) /locus_tag="Alide_0978" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1039668..1039670,1039680..1039685, 1039701..1039739)) /locus_tag="Alide_0978" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1040526..1040783 /locus_tag="Alide_0979" /db_xref="GeneID:10103010" CDS 1040526..1040783 /locus_tag="Alide_0979" /inference="similar to AA sequence:KEGG:Dtpsy_0821" /note="KEGG: dia:Dtpsy_0821 4Fe-4S ferredoxin iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_004125632.1" /db_xref="GI:319761695" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="GeneID:10103010" /translation="MALMITDECINCDVCEPECPNQAISMGEEHYEIEPSKCTECVGH FDEPQCVAICPVACIPVDPAHKEDRETLWQKFERLRAAQSA" misc_feature <1040547..1040696 /locus_tag="Alide_0979" /note="hypothetical protein; Provisional; Region: PRK13795" /db_xref="CDD:184331" gene complement(1040845..1041474) /locus_tag="Alide_0980" /db_xref="GeneID:10103011" CDS complement(1040845..1041474) /locus_tag="Alide_0980" /EC_number="3.1.1.29" /inference="protein motif:TFAM:TIGR00447" /note="TIGRFAM: peptidyl-tRNA hydrolase; KEGG: dia:Dtpsy_0822 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="YP_004125633.1" /db_xref="GI:319761696" /db_xref="GO:0004045" /db_xref="InterPro:IPR001328" /db_xref="InterPro:IPR018171" /db_xref="GeneID:10103011" /translation="MIKLFVGLGNPGPEYEATRHNAGFWWIDALARELKVVLAPERSY HGLAARANVAGHGVWLLQPQTFMNLSGKSVAALARFFKIAPEEILVVHDELDLPPGQA KLKHGGSHAGHNGLRDIHAQLGTGDYWRLRLGIGHPGARAEVINWVLKKPAPDQRTLI EDSIAHSLKAYPAMLAGDMDKATQLVHTTKPPRPKPPRPATAAPQGGVG" misc_feature complement(1040950..1041465) /locus_tag="Alide_0980" /note="Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462" /db_xref="CDD:73208" misc_feature complement(order(1041136..1041138,1041196..1041198, 1041274..1041279,1041415..1041417,1041445..1041447)) /locus_tag="Alide_0980" /note="putative active site [active]" /db_xref="CDD:73208" misc_feature complement(1041415..1041417) /locus_tag="Alide_0980" /note="catalytic residue [active]" /db_xref="CDD:73208" gene complement(1041584..1042210) /locus_tag="Alide_0981" /db_xref="GeneID:10103012" CDS complement(1041584..1042210) /locus_tag="Alide_0981" /inference="protein motif:TFAM:TIGR00731" /note="KEGG: dia:Dtpsy_0823 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like" /codon_start=1 /transl_table=11 /product="ribosomal 5S rRNA e-loop binding protein ctc/l25/tl5" /protein_id="YP_004125634.1" /db_xref="GI:319761697" /db_xref="GO:0003735" /db_xref="GO:0008097" /db_xref="InterPro:IPR001021" /db_xref="InterPro:IPR020055" /db_xref="GeneID:10103012" /translation="MQFVAYERAKQGTGASRRLRISGKAPGIVYGGSAEPQMIEVDHN ALWHALKKEAFHSSILDMELNGQVTKVLLRDVQYHPFKQQVLHVDFQRVDDKTRVHLK VPLHYEGLEGSPAVKEEGCTVTPLIHEVDVMCMPSQLPEFITVDLSGLTSKSAPGVQS LKIPNGVKIVVRGSNKNPALVSIKLPEVVADASAAPAPAAAPAKKGKK" misc_feature complement(1041935..1042210) /locus_tag="Alide_0981" /note="Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this...; Region: Ribosomal_L25_TL5_CTC; cd00495" /db_xref="CDD:88604" misc_feature complement(order(1041938..1041940,1041944..1041946, 1041950..1041952,1041980..1041982,1041986..1041991, 1042103..1042105,1042115..1042123,1042151..1042153, 1042157..1042165,1042187..1042189)) /locus_tag="Alide_0981" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88604" misc_feature complement(order(1041935..1041940,1041989..1041991, 1042001..1042003,1042037..1042039,1042115..1042117)) /locus_tag="Alide_0981" /note="CTC domain interface; other site" /db_xref="CDD:88604" misc_feature complement(order(1041938..1041940,1041962..1041967, 1041971..1041973,1041983..1041985,1041992..1041997)) /locus_tag="Alide_0981" /note="L16 interface [polypeptide binding]; other site" /db_xref="CDD:88604" gene complement(1042312..1043271) /locus_tag="Alide_0982" /db_xref="GeneID:10103013" CDS complement(1042312..1043271) /locus_tag="Alide_0982" /EC_number="2.7.6.1" /inference="protein motif:TFAM:TIGR01251" /note="TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: dia:Dtpsy_0824 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="ribose-phosphate pyrophosphokinase" /protein_id="YP_004125635.1" /db_xref="GI:319761698" /db_xref="GO:0000287" /db_xref="GO:0004749" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR000842" /db_xref="InterPro:IPR005946" /db_xref="GeneID:10103013" /translation="MQTNTPDFLVFTGNANPGLATEIVRNLGTTLGAVDAGRFSDGEV TVEIKQNVRARDVFVVQSTCAPTNENLMELLIMVDALKRASAERISAVIPYFGYARQD RRPRSTRVPISAKVVANMLQAVGVARVLTMDLHADQIQGFFDIPVDNIYASPVLLGDL NEKKYENLIVVSPDVGGVVRARALAKQLGTDLAIIDKRRPKANVSEVMHVIGDIDGRN CVIMDDMIDTAGTLVKAAEVLKERGAKKVYAYCTHPIFSGPAIERIANGTALDEVVVT NTIPLSDAAKGCAKIRQLSVAPLIAETIQRISKGESVSSMFSD" misc_feature complement(1042315..1043256) /locus_tag="Alide_0982" /note="ribose-phosphate pyrophosphokinase; Provisional; Region: PRK04923" /db_xref="CDD:179893" misc_feature complement(1042321..1043250) /locus_tag="Alide_0982" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene complement(1043387..1043463) /locus_tag="Alide_R0009" /note="tRNA-Gln1" /db_xref="GeneID:10103014" tRNA complement(1043387..1043463) /locus_tag="Alide_R0009" /product="tRNA-Gln" /db_xref="GeneID:10103014" gene complement(1043491..1044357) /locus_tag="Alide_0983" /db_xref="GeneID:10103015" CDS complement(1043491..1044357) /locus_tag="Alide_0983" /EC_number="2.7.1.148" /inference="protein motif:TFAM:TIGR00154" /note="TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: ajs:Ajs_0896 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2c-methyl-d-erythritol kinase" /protein_id="YP_004125636.1" /db_xref="GI:319761699" /db_xref="GO:0050515" /db_xref="InterPro:IPR004424" /db_xref="InterPro:IPR006204" /db_xref="GeneID:10103015" /translation="MRALYDVPAPAKLNLFLHVTGRRPDGYHLLQSVFMLIDWCDTLH FELRADGAISREDLTQPLPADDLVVRAARALQAATGCGLGAHIGVHKRVPAQAGMGGG SSDAASTLLALNRLWGLGLPRARLHAIGLGLGADVPFFLCGRNAWVEGIGDIIRPLDL EHQLPDASFAVVKPAAGLDTKAIFSHPSLKRDSSCATIQGFAAMPYQFGSNDLQPVAQ ALCPEIDQAIDWLASKGLRGRMTGSGSAVFAQATHAVDLHDAPAAWQVKMCENLGLHP LSDWALDERIKG" misc_feature complement(1043542..1044357) /locus_tag="Alide_0983" /note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: ipk; PRK00343" /db_xref="CDD:178981" gene complement(1044362..1044859) /locus_tag="Alide_0984" /db_xref="GeneID:10103016" CDS complement(1044362..1044859) /locus_tag="Alide_0984" /inference="protein motif:PFAM:PF03550" /note="PFAM: outer membrane lipoprotein LolB; KEGG: dia:Dtpsy_0826 lipoprotein" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein lolb" /protein_id="YP_004125637.1" /db_xref="GI:319761700" /db_xref="InterPro:IPR004565" /db_xref="GeneID:10103016" /translation="MTAPRPARGRLLLAGLALALLGACAQPPRPAGAAADHWSGRLAV QVEDASAQSFSAGFELQGSPQAGELTLFNPLGNVMAQLQWRPGHALLRNGGEQRQSTS LQALVLELTGSDLPIAALFGWLKGEAVQASGWQADLSALAQGRLTATRHTPAPQTTLR VALSL" sig_peptide complement(1044758..1044859) /locus_tag="Alide_0984" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.495 at residue 34" misc_feature complement(<1044416..1044742) /locus_tag="Alide_0984" /note="Outer membrane lipoprotein LolB; Region: LolB; pfam03550" /db_xref="CDD:112372" gene complement(1044856..1046637) /locus_tag="Alide_0985" /db_xref="GeneID:10103017" CDS complement(1044856..1046637) /locus_tag="Alide_0985" /inference="protein motif:PFAM:PF00515" /note="PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ajs:Ajs_0898 TPR repeat-containing protein" /codon_start=1 /transl_table=11 /product="tetratricopeptide tpr_1 repeat-containing protein" /protein_id="YP_004125638.1" /db_xref="GI:319761701" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10103017" /translation="MDYYGLMVHSLRRIRPAALACVAAACIFPALAQTGERASEPASA PVQEEETAALNAELFYELLLSEITTSEGDPATGYNLMLDAARRSGDPQLYRRATEIAL QSRSGEYALAAARAWKEALPQSRDANRYLLRILVALNRIGDSAEPLRQELASSSARDK VSTIRALPLLYARAGDKALAARVVRLALEEELNNPATGPMAWTTVGRMYLAADDKARA LEAAGNALAQNPGDDGAAMLSLQLLENAVPEAEALLSRYLAGKPLPEVRMAYARVLLE SQRLADAQAQVDAVTREQPDNAQAWLIRASLQLQAGELDQAEAALQRCTQLLEQDPAT EQRQRALTQIYLMQSQIAEKRGDLAQAQAWLARIDDAEQLLAVQSRHASLLVRQGRLD EARALIRAIPEKGPDDARLKLQAEVQLLREAGHYQQAYELQGKVVALAPQDNELVYDQ AMLADKAGRTAEMERLLRTIIARQPDHHHALNALGFSLADRGVRLQEAKALIVKALEY APDDPFITDSLGWVEFRLGNRKEALDILERAFKTRPDAEIAAHIGEVLWSLGQRDRAL AVWREGLRINKDNDVLKGTLKRLRVRP" sig_peptide complement(1046539..1046637) /locus_tag="Alide_0985" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.964) with cleavage site probability 0.956 at residue 33" misc_feature complement(1044943..>1045932) /locus_tag="Alide_0985" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" misc_feature complement(1045105..1045386) /locus_tag="Alide_0985" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(1045165..1045170,1045177..1045182, 1045189..1045194,1045270..1045275,1045282..1045287, 1045291..1045296,1045381..1045386)) /locus_tag="Alide_0985" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1045123..1045125,1045132..1045134, 1045144..1045146,1045183..1045185,1045228..1045230, 1045237..1045239,1045249..1045251,1045285..1045287, 1045330..1045332,1045339..1045341,1045351..1045353)) /locus_tag="Alide_0985" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(1044904..1045200) /locus_tag="Alide_0985" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(1044961..1044966,1044973..1044978, 1044985..1044990,1045063..1045068,1045075..1045080, 1045084..1045089,1045177..1045182,1045189..1045194, 1045198..1045200)) /locus_tag="Alide_0985" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1044922..1044924,1044931..1044933, 1044943..1044945,1044979..1044981,1045021..1045023, 1045030..1045032,1045042..1045044,1045078..1045080, 1045123..1045125,1045132..1045134,1045144..1045146, 1045183..1045185)) /locus_tag="Alide_0985" /note="TPR motif; other site" /db_xref="CDD:29151" gene 1046667..1047482 /locus_tag="Alide_0986" /db_xref="GeneID:10103018" CDS 1046667..1047482 /locus_tag="Alide_0986" /EC_number="3.2.2.23" /inference="protein motif:TFAM:TIGR00577" /note="TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: ajs:Ajs_0899 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding" /codon_start=1 /transl_table=11 /product="formamidopyrimidine-DNA glycosylase" /protein_id="YP_004125639.1" /db_xref="GI:319761702" /db_xref="GO:0003906" /db_xref="GO:0008270" /db_xref="GO:0008534" /db_xref="InterPro:IPR000191" /db_xref="InterPro:IPR000214" /db_xref="InterPro:IPR012319" /db_xref="InterPro:IPR015886" /db_xref="InterPro:IPR015887" /db_xref="InterPro:IPR020629" /db_xref="GeneID:10103018" /translation="MPELPEVEVTRRGLADAIGGATIRAVALGKSLRWPLGLAPGELA GQRVLAVRRRGKYLLLDLQQGLLLIHLGMSGSLRFAHGLPQRGPHDHFDMETDRGTLR LHDPRRFGAVVWAAGEDDPQARKLLGTLGVEPLGEDFDFQAFHAALRASRMPIKQLLL AGRVVVGVGNIYACEVLFLARIRPTMRASAIGSQRARRLHGAIREVLARAVERGGSTL RDFSGVDGNAGHFQAEANVYGREGLPCRQCGTPVRLLRQGQRSTYFCPNCQRS" misc_feature 1046667..1047476 /locus_tag="Alide_0986" /note="formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated; Region: PRK01103" /db_xref="CDD:179222" misc_feature 1046670..1047008 /locus_tag="Alide_0986" /note="N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases; Region: EcFpg-like_N; cd08966" /db_xref="CDD:176800" misc_feature order(1046670..1046675,1046832..1046834,1046874..1046876, 1046880..1046888,1046928..1046933,1046982..1046993) /locus_tag="Alide_0986" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176800" misc_feature 1046670..1046672 /locus_tag="Alide_0986" /note="catalytic residue [active]" /db_xref="CDD:176800" misc_feature order(1046673..1046684,1046688..1046693,1046700..1046702, 1046823..1046834,1046886..1046888) /locus_tag="Alide_0986" /note="H2TH interface [polypeptide binding]; other site" /db_xref="CDD:176800" misc_feature order(1046673..1046675,1046832..1046834) /locus_tag="Alide_0986" /note="putative catalytic residues [active]" /db_xref="CDD:176800" misc_feature 1046874..1046876 /locus_tag="Alide_0986" /note="turnover-facilitating residue; other site" /db_xref="CDD:176800" misc_feature order(1046883..1046885,1046985..1046987,1046991..1046993) /locus_tag="Alide_0986" /note="intercalation triad [nucleotide binding]; other site" /db_xref="CDD:176800" misc_feature 1046886..1046888 /locus_tag="Alide_0986" /note="8OG recognition residue [nucleotide binding]; other site" /db_xref="CDD:176800" misc_feature order(1046931..1046933,1046988..1046990) /locus_tag="Alide_0986" /note="putative reading head residues; other site" /db_xref="CDD:176800" misc_feature 1047054..1047332 /locus_tag="Alide_0986" /note="Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831" /db_xref="CDD:115485" misc_feature 1047390..1047473 /locus_tag="Alide_0986" /note="Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827" /db_xref="CDD:148438" gene 1047552..1049537 /locus_tag="Alide_0987" /db_xref="GeneID:10103019" CDS 1047552..1049537 /locus_tag="Alide_0987" /inference="similar to AA sequence:KEGG:Dtpsy_0829" /note="manually curated; KEGG: dia:Dtpsy_0829 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125640.1" /db_xref="GI:319761703" /db_xref="GeneID:10103019" /translation="MGSSFNERFDQHGAWRRAFAQQLKRLGQWMGAHDLMDAAVGERL QRLEEQVRSDKVTVAFVGEFSRGKSELINAIFFAGYGRRIMPATAGRTTMCPTELGYE GGTAPSLRLLPIETRMQPLGLAEWRLKPDLWVNVALDMDDPAQMAQALEKVSEVRRVS VDEARALGFWSDEAGDENPRRDAGGMVSVPMWRHAVINFPHPLLRQGLVILDTPGLNA VGVEPELTINLIAQAHAVVFLLGADTGVTRSDLAIWRDHLGGAEDAFDARLVVLNKID TLWDQLNSPAQVQAQLERQRHTVTEVLGVPLGQVVAVSAQKGLVAKINCDDDLLEASG LPQLEVALGTGIMGRRQSILRAAVAGGVTGLRNEARRVINIRRRDLDDQMLELRSLRG KNASVIDAMRGRIEQEQQEFEACTARIQAVRAVHLKMLRELFHQLGPRALKAQLAPLT EALESSGLKLGVRKAYGETFASVRAAMEAAQATGGEIQAMLGGTFRQLNTEFGFSLQV PVAAQLGAYVREIAAIEQRHLQYVGMGNVLRLARPEFTQRLLRALGLRLRTVFEAAAN ELEMWSKTATAQLDAQLRERKRSFERRIEAVNRIRQAASGLVERIAEIEAAEENLAEL ELRLSELTDELVQQPGVEEDLPVPDIPETAPQPLTPA" misc_feature 1047723..1048376 /locus_tag="Alide_0987" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature <1048170..1048496 /locus_tag="Alide_0987" /note="Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs)...; Region: Era_like; cd00880" /db_xref="CDD:133256" misc_feature order(1048182..1048199,1048245..1048247) /locus_tag="Alide_0987" /note="Switch II region; other site" /db_xref="CDD:133256" misc_feature 1048185..1048196 /locus_tag="Alide_0987" /note="G3 box; other site" /db_xref="CDD:133256" misc_feature 1048368..1048379 /locus_tag="Alide_0987" /note="G4 box; other site" /db_xref="CDD:133256" misc_feature 1048491..1048496 /locus_tag="Alide_0987" /note="G5 box; other site" /db_xref="CDD:133256" gene 1049534..1050592 /locus_tag="Alide_0988" /db_xref="GeneID:10103020" CDS 1049534..1050592 /locus_tag="Alide_0988" /inference="protein motif:TFAM:TIGR01084" /note="TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: dia:Dtpsy_0830 A/G-specific adenine glycosylase; SMART: HhH-GPD family protein; iron-sulfur cluster loop" /codon_start=1 /transl_table=11 /product="a/g-specific adenine glycosylase" /protein_id="YP_004125641.1" /db_xref="GI:319761704" /db_xref="GO:0019104" /db_xref="InterPro:IPR003265" /db_xref="InterPro:IPR003651" /db_xref="InterPro:IPR005760" /db_xref="GeneID:10103020" /translation="MTQLPVEIAAQVVRWQAGHGRNHLPWQNTRDAYRVWLSEIMLQQ TQVATVLEYYARFLARFPDVVQLAAAPQDEVLALWSGLGYYSRARNLHRCAQIVVQQH GGRFPRTVPELAALPGIGRSTAGAIAAFCFGERAAILDANVRRVLTRVLGFRADLAEA KNERELWRLAEALLPKGDLHAAMPRYTQGLMDLGAGICLPRNPSCMLCPLQNVCVARR DGNPQDYPVRTRKLKRSAQAWWLLLRQDGAGRLWLERRPSAGIWAGLYCPPVYASRAE LDAALPPPAAGAAEDLPPFIHVLTHRDLHLHPVLARGAGAAADPHCAEAQQAGWFMPA QCLELGLPAPVRRLIDAL" misc_feature 1049558..1050352 /locus_tag="Alide_0988" /note="A/G-specific adenine glycosylase; Region: mutY; TIGR01084" /db_xref="CDD:130156" misc_feature 1049630..>1049989 /locus_tag="Alide_0988" /note="endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056" /db_xref="CDD:28938" misc_feature order(1049663..1049671,1049678..1049680,1049792..1049794) /locus_tag="Alide_0988" /note="minor groove reading motif; other site" /db_xref="CDD:28938" misc_feature 1049879..1049902 /locus_tag="Alide_0988" /note="helix-hairpin-helix signature motif; other site" /db_xref="CDD:28938" misc_feature 1049951..1049953 /locus_tag="Alide_0988" /note="active site" /db_xref="CDD:28938" misc_feature 1050230..1050589 /locus_tag="Alide_0988" /note="DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important...; Region: DNA_Glycosylase_C; cd03431" /db_xref="CDD:72889" misc_feature order(1050311..1050319,1050422..1050424,1050431..1050436) /locus_tag="Alide_0988" /note="DNA binding and oxoG recognition site [nucleotide binding]" /db_xref="CDD:72889" gene complement(1050706..1051569) /locus_tag="Alide_0989" /db_xref="GeneID:10103021" CDS complement(1050706..1051569) /locus_tag="Alide_0989" /inference="similar to AA sequence:KEGG:Dtpsy_0831" /note="KEGG: dia:Dtpsy_0831 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125642.1" /db_xref="GI:319761705" /db_xref="InterPro:IPR005337" /db_xref="GeneID:10103021" /translation="MSLEVVVITGMSGSGKSVALHALEDAGYYCVDNLPPELLSSFVA LEHAHHGHRVAVAMDVRSATALPLVPRQLDRLREQGVQVRSLFLDATTGTLVRRFSET RRRHPLSQDELIEGRRALVQTIELERELLAELRAQSHVIDTSTLRPSQLLSYVKDLLA VPPSQLTLVFQSFAFKRGLPFDSDYVFDVRMLPNPHYEPALRPLTGKDAPVAEYLRQQ PEVALMLSHITQFLEHWLDALAQNHRSYVTVAVGCTGGQHRSVYLVEQLAERFTGRWN TLRRHRELDGI" misc_feature complement(1050715..1051569) /locus_tag="Alide_0989" /note="P-loop ATPase protein family; Region: ATP_bind_2; cl10035" /db_xref="CDD:186894" gene complement(1051575..1053248) /locus_tag="Alide_0990" /db_xref="GeneID:10103022" CDS complement(1051575..1053248) /locus_tag="Alide_0990" /inference="protein motif:TFAM:TIGR00634" /note="KEGG: ajs:Ajs_0903 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein" /codon_start=1 /transl_table=11 /product="DNA repair protein recn" /protein_id="YP_004125643.1" /db_xref="GI:319761706" /db_xref="GO:0005524" /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR004604" /db_xref="GeneID:10103022" /translation="MALRRIALRDFVIVQALDLDLHAGFTVLTGETGAGKSILIDALQ LLLGARADTGVIREGAQRTDICAEFDAGTAALGAWLEEAGIAHDGALLLRRTVDLQGK SRAWINGIPATAAQMRALGELLLDIHGQHAWQSLTRPDAVRGLLDAYAGAQAEPLAAL WAAWRDAQKALAHAREAQDTLQQERERLQWQIGEVDRLAPREGEWDGLNAEHARLSNA QALLDNAQGALAALQDDEAGGALAALAQAQHLLQAYEHIHEDFRAMNEVLASCIAQAD DVAHSLQGYLRHAEPDPDALERLDARLSQWMQLARRYKRTPSELPALLDGWKESLRRL DDAADLAALEAAEQAQAAAYRKAARALSQKRAKAAPKLAQAITQAMQGLGMAGGRFEV LVDKAAEPGPHGVDQVAFLVGSHPGMTPRPVGKVASGGELSRIALAISVATSALGEAP TLIFDEVDSGVGGAVAETVGRLMQQLGRERQVLAVTHLPQVAACADHHLIVSKHRHAE GTTSAVATAGANERVAEVARMLGGQQQSPTTLAHAREMLDGARAATAAG" misc_feature complement(1051593..1053242) /locus_tag="Alide_0990" /note="ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: RecN; COG0497" /db_xref="CDD:30843" misc_feature complement(<1052808..1053242) /locus_tag="Alide_0990" /note="RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides...; Region: ABC_RecN; cd03241" /db_xref="CDD:73000" misc_feature complement(1053138..1053161) /locus_tag="Alide_0990" /note="Walker A/P-loop; other site" /db_xref="CDD:73000" misc_feature complement(order(1052832..1052834,1053135..1053143, 1053147..1053152)) /locus_tag="Alide_0990" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73000" misc_feature complement(1052832..1052843) /locus_tag="Alide_0990" /note="Q-loop/lid; other site" /db_xref="CDD:73000" misc_feature complement(1051653..>1052039) /locus_tag="Alide_0990" /note="RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides...; Region: ABC_RecN; cd03241" /db_xref="CDD:73000" misc_feature complement(1051941..1051970) /locus_tag="Alide_0990" /note="ABC transporter signature motif; other site" /db_xref="CDD:73000" misc_feature complement(1051881..1051898) /locus_tag="Alide_0990" /note="Walker B; other site" /db_xref="CDD:73000" misc_feature complement(1051863..1051874) /locus_tag="Alide_0990" /note="D-loop; other site" /db_xref="CDD:73000" misc_feature complement(1051782..1051802) /locus_tag="Alide_0990" /note="H-loop/switch region; other site" /db_xref="CDD:73000" gene complement(1053251..1054147) /locus_tag="Alide_0991" /db_xref="GeneID:10103023" CDS complement(1053251..1054147) /locus_tag="Alide_0991" /inference="protein motif:PFAM:PF01513" /note="PFAM: ATP-NAD/AcoX kinase; KEGG: dia:Dtpsy_0833 NAD(+)/NADH kinase family protein" /codon_start=1 /transl_table=11 /product="ATP-nad/acox kinase" /protein_id="YP_004125644.1" /db_xref="GI:319761707" /db_xref="GO:0003951" /db_xref="InterPro:IPR002504" /db_xref="GeneID:10103023" /translation="MKPIFRRVAVIGKYQVPVAGSASGNSRQIIESIARFIAQQECEP TLETETAASTGLTGYHTLDVDGIGQHCDLCVVVGGDGTMLGVGRRLAAYGTPLVGINQ GRLGFITDIALQGYQDVLTPILHGDYEEDVRPLMQARVERGGESVFEALALNDVVVNR GSTSGMVELRVEVDGVFVSNQRADGLIVASPTGSTAYALSAGGPMLHPSIPGWVLVPI APHTLSNRPIVLSDATEIAIEVAGGRDISANFDMQSLASLQHGDRVLVRRSAHRVCFL HPRGWSFFATLRRKLRWNEGGS" misc_feature complement(1053254..1054147) /locus_tag="Alide_0991" /note="Diacylglycerol kinase catalytic domain; Region: DAGK_cat; cl01255" /db_xref="CDD:194084" misc_feature complement(1053269..1054012) /locus_tag="Alide_0991" /note="inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK02231" /db_xref="CDD:167337" gene 1054176..1055180 /locus_tag="Alide_0992" /db_xref="GeneID:10103024" CDS 1054176..1055180 /locus_tag="Alide_0992" /inference="protein motif:TFAM:TIGR00331" /note="KEGG: dia:Dtpsy_0847 heat-inducible transcription repressor; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like" /codon_start=1 /transl_table=11 /product="heat-inducible transcription repressor hrca" /protein_id="YP_004125645.1" /db_xref="GI:319761708" /db_xref="GO:0003677" /db_xref="InterPro:IPR002571" /db_xref="InterPro:IPR021153" /db_xref="GeneID:10103024" /translation="MLDDRSKLLLKALVERYIADGQPVGSRTLSRASGLELSPATIRN VMADLEDLGLIASPHTSAGRVPTARGYRLFVDTMLTVQQEQLPALQIKPEQPQKVIAN AAHLLSSLSQFVGVVMAPRRASVFRHIEFLRLSERRLLVIIVSPDGDVQNRVIFTESD YTQSQLVEAANFLNANYAGLTMEQVRERLRPEVDKLRGEIAALMQAAVNAGSQALSES QEEVVFSGERNLLAVSDFSGDMGHLRRAFDLFEQKTQILRLLDISSRAEGVRIFIGGE SQVVPFEELSVVSAPYEVDGQVVGTLGVIGPTRMPYDRMIQIVDITSKLVSNALSHHK " misc_feature 1054176..1055168 /locus_tag="Alide_0992" /note="heat-inducible transcription repressor; Provisional; Region: hrcA; PRK00082" /db_xref="CDD:178849" misc_feature 1054176..1054391 /locus_tag="Alide_0992" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1054467..1055123 /locus_tag="Alide_0992" /note="HrcA protein C terminal domain; Region: HrcA; pfam01628" /db_xref="CDD:145001" gene 1055520..1056194 /locus_tag="Alide_0993" /db_xref="GeneID:10103025" CDS 1055520..1056194 /locus_tag="Alide_0993" /inference="protein motif:PFAM:PF03737" /note="KEGG: dac:Daci_4429 hypothetical protein; manually curated; PFAM: Dimethylmenaquinone methyltransferase" /codon_start=1 /transl_table=11 /product="dimethylmenaquinone methyltransferase" /protein_id="YP_004125646.1" /db_xref="GI:319761709" /db_xref="InterPro:IPR005493" /db_xref="GeneID:10103025" /translation="MNGFQICRRTRRVAPHIVKAFSELPVANISDCMARMSAAGAQLR PYHAKGVLAGPAFTVRSRPGDNLMIHKALHMAEPGDVIVVDAGGDLTNALIGELMVAT AIKRGIAGFVMNGAIRDVDAIGAGTFPVYAAGVTHRGPYKDGPGEINVRIALNGMVIE PGDLIVGDADGLLCVPFDEAETLLEATRRKQDAERVTMREIEDGALDTAWIDAALKRL GCEIKV" misc_feature 1055520..1056179 /locus_tag="Alide_0993" /note="hypothetical protein; Validated; Region: PRK06201" /db_xref="CDD:180465" misc_feature 1055571..1056182 /locus_tag="Alide_0993" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene 1056191..1057147 /locus_tag="Alide_0994" /db_xref="GeneID:10103026" CDS 1056191..1057147 /locus_tag="Alide_0994" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bxe:Bxe_B0983 2-hydroxyacid dehydrogenase" /codon_start=1 /transl_table=11 /product="d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein" /protein_id="YP_004125647.1" /db_xref="GI:319761710" /db_xref="GO:0003677" /db_xref="GO:0048037" /db_xref="GO:0051287" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:10103026" /translation="MRIAFLDRATLCPQTVLRNPEFEHELCVYESTAPAEVARRIADA DIVIVNKVRLDRASIEAAPRLRLVAVAATGTDNVDIAACRERGIVVSNIRNYAVNTVP EHTFALIFALRRSICAYRDAVRAGRWQDSGQFCFFDHPIRDLAGSTLGIIGDGVLGQA TAAMGRALGMRVLFSTHKGRSGQGTLYTPFEKMLEQVDVLTLHCPLTPATKHMIGAQE FAQMCRRPLLINTARGGLVDESAVGPALAAGQIAGAAFDVVSVEPPPHNHPFMQLIGR PDFILTPHVAWASDEAVQALADQLVDNLEAFVRGEPRNVVGA" misc_feature 1056191..1057141 /locus_tag="Alide_0994" /note="glycerate dehydrogenase; Provisional; Region: PRK06487" /db_xref="CDD:180588" misc_feature 1056506..1057048 /locus_tag="Alide_0994" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(1057210..1058112) /locus_tag="Alide_0995" /db_xref="GeneID:10103027" CDS complement(1057210..1058112) /locus_tag="Alide_0995" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_3933 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125648.1" /db_xref="GI:319761711" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103027" /translation="MMTFKQLEAVYWVTRLGSFSQAAAKLHTTQSAISKRVQELESLF SVELFDRTQRTSRLTEKGEEMYLVAKRLLEQRDEAAAQFTSSQEVVRRLRIGVTELTA MTWLPRLVELVRTHHPKVILEPDVDMSVMLRDKLLANEVDVIFVPDACGDERFTMKRL GSVENAWMCKPHLFDGFKIRRLHDLSSHTFLTQGDKSGTGVIYNEWLDAVNMRPTNII VCNSLLAIIGMTVSGLGFSYLPRESLEPLIQADYLQVLKVTPPLPKMNYVAAYKSEQR STLISSIVLLAQECCDFSRVLQKS" misc_feature complement(1057285..1058109) /locus_tag="Alide_0995" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1057924..1058103) /locus_tag="Alide_0995" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1057285..1057839) /locus_tag="Alide_0995" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature complement(order(1057417..1057422,1057426..1057431, 1057447..1057464,1057735..1057755,1057759..1057761, 1057771..1057773,1057780..1057785,1057789..1057794)) /locus_tag="Alide_0995" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 1058264..1059484 /locus_tag="Alide_0996" /db_xref="GeneID:10103028" CDS 1058264..1059484 /locus_tag="Alide_0996" /inference="protein motif:PFAM:PF00155" /note="KEGG: mno:Mnod_0890 aminotransferase class I and II; manually curated; PFAM: aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="aminotransferase class i and ii" /protein_id="YP_004125649.1" /db_xref="GI:319761712" /db_xref="GO:0003700" /db_xref="GO:0030170" /db_xref="InterPro:IPR001176" /db_xref="InterPro:IPR004838" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10103028" /translation="MFSERLASVKPSPSMAAKAKVDALRAQGRKVIDFTIGEPDFDTA AHIIEGGINALKSGHTRYTASAGTPALRAAIARKLERENQLSFRAEEIVVGCGAKHII YNAFAASLNDGDEVIVPAPFWVSYPDMVALQAAKPVIVPCTESSGFKLKAAELAAAIT PRTRWLILNTPNNPSGAVYTREELAAICEVLRAHPQVWLMTDEIYEHFVYNGARHVSP LSVAPDLRERTLLVNGLSKAYAFTGWRIGYGAGPLELIKRINLLLTQSTTCASAMSQE AAVVALDGPQDCVAEAAQLFAKRCDRVMQLIGQIPGLSCVRPDGAFYTFVNVQGLLGQ ITPEGRELASDVDVMEYFIMQAQVAVIDGTSYGCPGYLRISFATSMDEIENGFAAIAK AVAACRPAMGTIHA" misc_feature 1058315..1059445 /locus_tag="Alide_0996" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature 1058357..1059439 /locus_tag="Alide_0996" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(1058552..1058560,1058630..1058632,1058780..1058782, 1058876..1058878,1058963..1058965,1058969..1058974, 1058996..1058998) /locus_tag="Alide_0996" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(1058561..1058563,1058660..1058662,1058855..1058857, 1058990..1058998,1059083..1059085,1059092..1059094) /locus_tag="Alide_0996" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 1058972..1058974 /locus_tag="Alide_0996" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 1059649..1060347 /locus_tag="Alide_0997" /db_xref="GeneID:10103029" CDS 1059649..1060347 /locus_tag="Alide_0997" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: psp:PSPPH_2462 glutamine ABC transporter, permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004125650.1" /db_xref="GI:319761713" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10103029" /translation="MTIQLDFSLFTQPEFLGQVSKGLLGTLELAALAFALAIAMAVLI AVMRMSNSKACQAVAAAYVEYHQNVPLLVHIFLWYFGVAALLPAGVQQWINAHNSEFI FAFIGIGLCLGAYMSEDLRGGIRSIPTSQLEASRALGLSYLQAFRLVILPQAVRVSMP ALINHTVLLFKNTSLAMTVGAVELTYVTKEVESQTFRTFEIYLASTVMYLGLSLLLMW FGAVIENRIRIRNR" misc_feature <1059778..>1059912 /locus_tag="Alide_0997" /note="ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: BatB; COG4597" /db_xref="CDD:34232" misc_feature <1059847..1060302 /locus_tag="Alide_0997" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1059847..1059867,1059874..1059879,1059883..1059885, 1059976..1059981,1059985..1059987,1059991..1059993, 1060000..1060005,1060009..1060011,1060021..1060026, 1060033..1060035,1060084..1060086,1060126..1060131, 1060138..1060140,1060159..1060170,1060177..1060182, 1060219..1060224,1060252..1060257,1060264..1060269, 1060273..1060278,1060285..1060290,1060297..1060302) /locus_tag="Alide_0997" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1059847..1059885,1060159..1060176) /locus_tag="Alide_0997" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1059883..1059885,1059961..1059963,1060177..1060179, 1060213..1060215,1060222..1060224,1060252..1060254) /locus_tag="Alide_0997" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1060036..1060074,1060090..1060095,1060105..1060107) /locus_tag="Alide_0997" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1060350..1061096 /locus_tag="Alide_0998" /db_xref="GeneID:10103030" CDS 1060350..1061096 /locus_tag="Alide_0998" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: vap:Vapar_6370 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004125651.1" /db_xref="GI:319761714" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10103030" /translation="MNDIINIIQDNWELLLVGQYPHGPIGGLAVTLFLSLVGIVLAFP LGVVLALCRLSPFRFLSWPATAIVYVVRGVPLIMFIFWTYFIVPHILGRPVAGITTML VTLVIYQSAYLAEIVRAGMQGLPFGQTEAARAIGLSYMQTTFKVLLPQAIYNMVPAII SQFVSSIKDTALGYVISVNELTFAASQINANLLTMPFQVYILLASIYFVICALLTQLA RYLERRIALRRAGKAGASAAVASAMQQANV" misc_feature 1060428..1061021 /locus_tag="Alide_0998" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature 1060431..1060994 /locus_tag="Alide_0998" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1060479..1060484,1060491..1060496,1060509..1060511, 1060539..1060550,1060554..1060583,1060590..1060595, 1060599..1060601,1060668..1060673,1060677..1060679, 1060683..1060685,1060692..1060697,1060701..1060703, 1060713..1060718,1060725..1060727,1060776..1060778, 1060818..1060823,1060830..1060832,1060851..1060862, 1060869..1060874,1060914..1060919,1060947..1060952, 1060959..1060964,1060968..1060973,1060980..1060985, 1060992..1060994) /locus_tag="Alide_0998" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1060557..1060601,1060851..1060868) /locus_tag="Alide_0998" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1060599..1060601,1060653..1060655,1060869..1060871, 1060908..1060910,1060917..1060919,1060947..1060949) /locus_tag="Alide_0998" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1060728..1060766,1060782..1060787,1060797..1060799) /locus_tag="Alide_0998" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1061107..1061877 /locus_tag="Alide_0999" /db_xref="GeneID:10103031" CDS 1061107..1061877 /locus_tag="Alide_0999" /inference="protein motif:PFAM:PF00005" /note="KEGG: rsl:RPSI07_mp0646 amino-acid ATP-binding ABC transporter protein; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125652.1" /db_xref="GI:319761715" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103031" /translation="MNNAMDKTTNNGAPMISFRGVHKWYGEYHALNDINATVGKGEVI VVCGPSGSGKSTLIRTVNRLEPIQKGHIEFDGQDVCSPNLDINKFRSHVGFVFQSFNL FPHLSVTENIELAPVTVLGEKRNSARERALKLLERVGLASKASAYPGQLSGGQQQRVA IARALAMNPPAILFDEPTSALDPEMVGEVLQVMKQLAREGMTMMCVTHEMNFAREVAD RVWFMDHGVLIESDTPEEFFRNPKSERAQRFLNDLRSH" misc_feature 1061146..1061868 /locus_tag="Alide_0999" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature 1061152..1061790 /locus_tag="Alide_0999" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 1061248..1061271 /locus_tag="Alide_0999" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(1061257..1061262,1061266..1061274,1061398..1061400, 1061629..1061634,1061728..1061730) /locus_tag="Alide_0999" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 1061389..1061400 /locus_tag="Alide_0999" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 1061557..1061586 /locus_tag="Alide_0999" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 1061617..1061634 /locus_tag="Alide_0999" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 1061641..1061652 /locus_tag="Alide_0999" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 1061716..1061736 /locus_tag="Alide_0999" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene 1061917..1062750 /locus_tag="Alide_1000" /db_xref="GeneID:10103032" CDS 1061917..1062750 /locus_tag="Alide_1000" /inference="protein motif:PFAM:PF00497" /note="KEGG: mno:Mnod_0891 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_004125653.1" /db_xref="GI:319761716" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="InterPro:IPR018313" /db_xref="GeneID:10103032" /translation="MPFKNRLISSLAAAAASMGFAALSTSAMADQLADIKAKGSLVCG VLGTSKPFSFPNPQTREIQGYDVDFCSAVAKSLGVKLEIKPISVAARIPELTQKRIDV IAANLGWTAERAQQIAYSDAYYVALQKVAVKRGAFARSTDLAGKRVSATKGSTSEIAI RAFLPTATPVTFQDPPPAFLALQQGKVDGFVVTEMVLVQLKAQSEADHPIDILEPPLA EEFWGIGMRKEETALSGHVNKTLRQMEASGEAARIFDKWMGAGTDFKMKRGFVVKPVQ G" sig_peptide 1061917..1062006 /locus_tag="Alide_1000" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 at residue 30" misc_feature 1062037..1062696 /locus_tag="Alide_1000" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature 1062037..1062687 /locus_tag="Alide_1000" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(1062061..1062063,1062178..1062180,1062253..1062255, 1062379..1062381,1062493..1062495) /locus_tag="Alide_1000" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1062442..1062444,1062454..1062456,1062472..1062474) /locus_tag="Alide_1000" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 1062568..1062585 /locus_tag="Alide_1000" /note="hinge residues; other site" /db_xref="CDD:29040" gene 1062862..1063722 /locus_tag="Alide_1001" /db_xref="GeneID:10103033" CDS 1062862..1063722 /locus_tag="Alide_1001" /inference="protein motif:PFAM:PF00497" /note="KEGG: avi:Avi_7667 ABC transporter substrate binding protein (amino acid); PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_004125654.1" /db_xref="GI:319761717" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10103033" /translation="MSSKIRLFSTLAATAMGLGVAALSASAHADQLANIKAKKTLVCG TFAAIPPFGYPDPKTRETIGSDIELCRAVAKEMGVNAEIRGFPVGVHIPELKLGHIDI IIANMGYTKTRAEQVEFSDAYNVGAEVAVVPKDSGIKTLSNLDGKKISATKGSTSETA IKLRLKEAQPLTYQDASSAFLALQQGKVDAFVINNVSAAAFANQSQKGPKPSVVLDEP LYVQPVVIGMTKGETALIREINTILRKLEDSGYMDQHWNKWFGDGSDYKLKRPYKVTP IKDVKFEPLP" sig_peptide 1062862..1062951 /locus_tag="Alide_1001" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.974 at residue 30" misc_feature 1062979..1063641 /locus_tag="Alide_1001" /note="Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062" /db_xref="CDD:128376" misc_feature 1062982..1063641 /locus_tag="Alide_1001" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(1063006..1063008,1063123..1063125,1063198..1063200, 1063327..1063329,1063441..1063443) /locus_tag="Alide_1001" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1063390..1063392,1063402..1063404,1063420..1063422) /locus_tag="Alide_1001" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 1063525..1063542 /locus_tag="Alide_1001" /note="hinge residues; other site" /db_xref="CDD:29040" gene 1063763..1064500 /locus_tag="Alide_1002" /db_xref="GeneID:10103034" CDS 1063763..1064500 /locus_tag="Alide_1002" /inference="protein motif:PFAM:PF01177" /note="PFAM: Asp/Glu/hydantoin racemase; KEGG: mno:Mnod_0887 Asp/Glu/hydantoin racemase" /codon_start=1 /transl_table=11 /product="asp/glu/hydantoin racemase" /protein_id="YP_004125655.1" /db_xref="GI:319761718" /db_xref="InterPro:IPR015942" /db_xref="GeneID:10103034" /translation="MVLPRIGVLIPSTNTAVEADFQRVLAGHASVHSERLFIPDGQMS EAHLDEMNRDLEARIRSLASAKVDVVAYACTSGSFYKGAAWDEAVIETVQRVAGVPCT TTSKAVAEALRCVAPSGAIAAITPYPEWTNQRLRQYYEAQGFSILALAGDERSARGGH RFVNDQDPAEIVRFGLENMHEDARALFCSCTAWRAFEALPALEAALGIPVVTSNQATL WKASRMLNLQLPAQAGTSGPFGRLSHF" misc_feature 1063775..1064452 /locus_tag="Alide_1002" /note="Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518" /db_xref="CDD:193849" gene 1064520..1064936 /locus_tag="Alide_1003" /db_xref="GeneID:10103035" CDS 1064520..1064936 /locus_tag="Alide_1003" /inference="similar to AA sequence:KEGG:BB4733" /note="manually curated; KEGG: bbr:BB4733 biotin carboxyl carrier protein of acetyl-CoA carboxylase" /codon_start=1 /transl_table=11 /product="biotin carboxyl carrier protein of acetyl-CoA carboxylase" /protein_id="YP_004125656.1" /db_xref="GI:319761719" /db_xref="InterPro:IPR000089" /db_xref="GeneID:10103035" /translation="MVNPADILQIARQLRQSGMQAIELRDAETRLRIVARNGGLDAAT GTAASASDGEAAAMDAIVRANALGVVRLRHPSQVGAGLMAGARLQAGESAIFLESRGV IKAIDAPIDGEVTQLFVADGDRADYGMPLFAMRTQP" misc_feature <1064772..1064915 /locus_tag="Alide_1003" /note="pyruvate carboxylase subunit B; Validated; Region: PRK09282" /db_xref="CDD:181754" gene 1064933..1065616 /locus_tag="Alide_1004" /db_xref="GeneID:10103036" CDS 1064933..1065616 /locus_tag="Alide_1004" /inference="protein motif:PFAM:PF02682" /note="KEGG: vap:Vapar_6364 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1" /codon_start=1 /transl_table=11 /product="allophanate hydrolase subunit 1" /protein_id="YP_004125657.1" /db_xref="GI:319761720" /db_xref="InterPro:IPR003833" /db_xref="InterPro:IPR010016" /db_xref="GeneID:10103036" /translation="MSTAADIAQAAPRLAVSALGTDALLFESLAPLSHEAQERILMVA DQASQWRGVEEAVPGMNNLMLIFDSTQVSSAEMQSRVQQAWLSPVHVRRKAREFELPV VYGGERGLDLEHVAAHNGISVADVIELHSSAIYTVYFLGAHPGFAYLGGLDARLHTPR RAQPRLKVPAGSVSIGGAQAGVQAQTLPSGWNLIGHTDRRFFDPASATPALLAPGDIV RFRAVKALP" misc_feature 1064978..1065604 /locus_tag="Alide_1004" /note="Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; Region: DUR1; cl00896" /db_xref="CDD:176822" misc_feature 1064978..1065568 /locus_tag="Alide_1004" /note="Allophanate hydrolase subunit 1; Region: AHS1; pfam02682" /db_xref="CDD:145701" gene 1065613..1066590 /locus_tag="Alide_1005" /db_xref="GeneID:10103037" CDS 1065613..1066590 /locus_tag="Alide_1005" /EC_number="6.3.4.6" /inference="protein motif:TFAM:TIGR00724" /note="SMART: Allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; KEGG: rsl:RPSI07_mp0640 conserved hypothethical protein, allophanate hydrolase subunit 2 domain; PFAM: Allophanate hydrolase subunit 2" /codon_start=1 /transl_table=11 /product="urea amidolyase related protein" /protein_id="YP_004125658.1" /db_xref="GI:319761721" /db_xref="InterPro:IPR003778" /db_xref="GeneID:10103037" /translation="MIEILSTGGLTTVQDAGRRGYRRFGVGIGGPLDSLATTIGNLML GNDPEAAFLEVIIFPLKLRLRQAARIAVTGSDAQVEVDGQRFPPWWSVPVQPGQVVTL RAPANGGVAYVCVSGGIDVPPMLGSRSTDLKAGFGGFHGRTLRKGDVLDVLSGMHAHG SRRFGVLPPCAGLPMPREGDGNASSATIVRVLPAAQWDCFSEAVRNEFLAATWQITPD SNRIGLRLSGPEIKPVQGMELLSHGIIPGVIQIPPHGQPIVMQCDAQTAGGYPKLATV IAADMWRLAQTPIGGKLRFQCVDMEEALAANRQVRDYVARVQRAMELLY" misc_feature 1065679..1066545 /locus_tag="Alide_1005" /note="Allophanate hydrolase subunit 2; Region: AHS2; cl00865" /db_xref="CDD:176587" misc_feature 1065679..1066521 /locus_tag="Alide_1005" /note="Allophanate hydrolase subunit 2; Region: AHS2; pfam02626" /db_xref="CDD:145662" gene 1066603..1067367 /locus_tag="Alide_1006" /db_xref="GeneID:10103038" CDS 1066603..1067367 /locus_tag="Alide_1006" /inference="protein motif:PFAM:PF03746" /note="PFAM: LamB/YcsF family protein; KEGG: mno:Mnod_0902 LamB/YcsF family protein" /codon_start=1 /transl_table=11 /product="lamb/ycsf family protein" /protein_id="YP_004125659.1" /db_xref="GI:319761722" /db_xref="InterPro:IPR005501" /db_xref="GeneID:10103038" /translation="MTTVDINCDLGEGFGPYRMGDDAALMKVITSANIACGFHAGDPG IMVNTVQLAMENGVDIGAHVGFADLQGFGRRVLNLEPAELKAMTWYQLGALQGIAQAA GRRLQHVTFHGALGNMCFADADLAATLMAAIKAFDAGLTVIAPPMTEMEKAAEQAGLP VKRVVFADRAYDDRGLLVSRKLPGAVIHDPEAVIQRVLGMVQDGAITSQSGKRMPLAI DSVLVHGDTPGSASLASLVRERLQHAGVQVRPLSQR" misc_feature 1066603..1067340 /locus_tag="Alide_1006" /note="LamB/YcsF family; Region: LamB_YcsF; cl00664" /db_xref="CDD:186134" gene 1067383..1067856 /locus_tag="Alide_1007" /db_xref="GeneID:10103039" CDS 1067383..1067856 /locus_tag="Alide_1007" /inference="protein motif:TFAM:TIGR00531" /note="KEGG: bph:Bphy_2629 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, biotin carboxyl carrier protein" /protein_id="YP_004125660.1" /db_xref="GI:319761723" /db_xref="GO:0003989" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR001249" /db_xref="GeneID:10103039" /translation="MAFDIARIKSLITAAAEAQVDELELSEAGMDVRILRLADSVQLS APGTAVAGQPAQTPSAPLAVDRQVQAESAASPPPVHTLTAFMAGTFYRSITPGGEPLV QEGAAVAPGTVLGVLESMKIMNEISSESQGIVKRILCENAQVVSAGQPLFELQEC" misc_feature 1067392..1067838 /locus_tag="Alide_1007" /note="acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated; Region: PRK06302" /db_xref="CDD:180522" misc_feature 1067623..1067844 /locus_tag="Alide_1007" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature order(1067713..1067715,1067740..1067748,1067767..1067769) /locus_tag="Alide_1007" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature 1067743..1067745 /locus_tag="Alide_1007" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene 1067860..1069203 /locus_tag="Alide_1008" /db_xref="GeneID:10103040" CDS 1067860..1069203 /locus_tag="Alide_1008" /inference="protein motif:TFAM:TIGR00514" /note="KEGG: bbr:BB4735 biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, biotin carboxylase" /protein_id="YP_004125661.1" /db_xref="GI:319761724" /db_xref="GO:0016874" /db_xref="InterPro:IPR004549" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011764" /db_xref="GeneID:10103040" /translation="MLKKVLIANRGEIALRVQRACRRLGLASVVVYSEADRDALYVRH ADEAYCIGPAASAQSYLDGSAILDAAALAGADAIHPGYGFLSENAGFADKVAQAGLVF IGPSAEVMRTMGDKVCAKQAMIAAGVPCVPGSPEALGDDESQIKALAAEIGYPVIIKA AGGGGGRGMRVVESEDALLPAIAMTRAEADAAFRNAAVYMEKYLLAPRHIEIQVLADA HGKAVWLGERDCSMQRRHQKVIEESPAPGLDAAAVAEIGERCARACEQMGYVGAGTFE FLYEKGQFFFIEMNTRVQVEHPVTEWVTGIDIVEMQLRIAAGERLPWTQEDIVRKGHA IECRINAEDPRSFRPSPGLLCEWIAPSGPGVRVDSHMYGGYEIPPFYDSLLGKLIVHG SDREEAVARMRAALHELVATGVQTNVPLHQELMLDPAFLQGGTSIHYLEQWLMKR" misc_feature 1067860..1069191 /locus_tag="Alide_1008" /note="acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591" /db_xref="CDD:181492" misc_feature 1067863..1068186 /locus_tag="Alide_1008" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature 1068202..1068825 /locus_tag="Alide_1008" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 1068865..1069182 /locus_tag="Alide_1008" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" gene 1069795..1070856 /locus_tag="Alide_1009" /db_xref="GeneID:10103041" CDS 1069795..1070856 /locus_tag="Alide_1009" /inference="protein motif:PFAM:PF05036" /note="PFAM: Sporulation domain-containing protein; KEGG: aav:Aave_3575 sporulation domain-containing protein" /codon_start=1 /transl_table=11 /product="sporulation domain-containing protein" /protein_id="YP_004125662.1" /db_xref="GI:319761725" /db_xref="InterPro:IPR007730" /db_xref="GeneID:10103041" /translation="MARMPTYTAHAAHAADQPGAAAQYTSVAPALYRAALGPVNLEHY LAAFERLDATGRVLPGWNLAAALCPLGWLVLRRLWRQALLVFAALASGALLLWAVGHR WLALPWPMLAGLALAGLTVLCGGLGLYGDALVHADVRRRIDGAVSAASTMREAMGLLQ RQASSRRRLLWVAVASAALAAAAAWLAFAGAMGDRRMPDAGEPASVAPSAPEPEPGPQ PPVVGGEQPVAPAADQAPVQPLLQEPEAEPEPEVAQAPAQEPPQAKDPAPARPPQRAA QRRLYINVGLFADPENARRTQARLRQAGLPCAVEPLVRSDGRRLQRVRVGPFSSAAQA NAAVAKVRAMGLEAVAAAQ" misc_feature 1070635..>1070784 /locus_tag="Alide_1009" /note="Sporulation related domain; Region: SPOR; cl10051" /db_xref="CDD:186898" gene 1070930..1071271 /locus_tag="Alide_1010" /db_xref="GeneID:10103042" CDS 1070930..1071271 /locus_tag="Alide_1010" /inference="similar to AA sequence:KEGG:Ajs_0920" /note="KEGG: ajs:Ajs_0920 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125663.1" /db_xref="GI:319761726" /db_xref="GeneID:10103042" /translation="MRYFSRAGGVAGMAALALLALLAGCSALGPGAGPAQPIGASTAP VGGTCDAKGAQWAVGKSGTARVVEEARVRAGARMARVVRQGQPVTQVFDAQRLSLEVD GGGKVTAARCG" sig_peptide 1070930..1071028 /locus_tag="Alide_1010" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.744 at residue 33" gene complement(1071288..1072523) /locus_tag="Alide_1011" /db_xref="GeneID:10103043" CDS complement(1071288..1072523) /locus_tag="Alide_1011" /inference="protein motif:TFAM:TIGR00539" /note="TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: dia:Dtpsy_0856 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="oxygen-independent coproporphyrinogen iii oxidase" /protein_id="YP_004125664.1" /db_xref="GI:319761727" /db_xref="GO:0004109" /db_xref="InterPro:IPR004559" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR010723" /db_xref="GeneID:10103043" /translation="MSIPITPAAQPGAAPHDVQHYMRPGLLQLTSLPPLSLYVHLPWC LRKCPYCDFNSHQAPGGSEALPEARYTAALVADLEAALPLVWGRTVHSIFIGGGTPSL FSPEAMDRLLGDIRARLPLDAGCEVTLEANPGTFEKERFRAYRGAGVTRLSIGVQSFN DRHLQALGRVHDRAQALAAVEEAAQAFETFNLDIMYALPGQTPAEQEQDMRQALALAP PHISIYHLTIEPNTYFAKYPPRLPEDDQAYAMLDRITELTAAAGLSRYEVSAYAREGH QCQHNRNYWQFGDYLGIGAGAHSKLSFAHRIVRQVRLRDPQLYMTGALAGRAIAQDED VRRADLPFEFMLNALRLREGFALQDFTERTGQPLTAIAQGLQQAEARGLIARDMGHVR PTERGFDFLSDLQALFLGD" misc_feature complement(1071297..1072472) /locus_tag="Alide_1011" /note="coproporphyrinogen III oxidase; Provisional; Region: PRK08898" /db_xref="CDD:181577" misc_feature complement(1071774..1072397) /locus_tag="Alide_1011" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(1071846..1071851,1071939..1071941, 1072059..1072061,1072128..1072136,1072227..1072232, 1072236..1072238,1072368..1072376,1072380..1072382, 1072386..1072388,1072392..1072394)) /locus_tag="Alide_1011" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature complement(1071330..1071677) /locus_tag="Alide_1011" /note="HemN C-terminal region; Region: HemN_C; pfam06969" /db_xref="CDD:191656" gene complement(1072615..1073232) /locus_tag="Alide_1012" /db_xref="GeneID:10103044" CDS complement(1072615..1073232) /locus_tag="Alide_1012" /inference="protein motif:TFAM:TIGR00042" /note="KEGG: dia:Dtpsy_0857 deoxyribonucleotide triphosphate pyrophosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein" /codon_start=1 /transl_table=11 /product="non-canonical purine ntp pyrophosphatase, rdgb/ham1 family" /protein_id="YP_004125665.1" /db_xref="GI:319761728" /db_xref="GO:0016787" /db_xref="InterPro:IPR002637" /db_xref="InterPro:IPR020922" /db_xref="GeneID:10103044" /translation="MKLVLASNNRGKLAELQAMLAPLGVELVAQAELGVGEGEEPFHT FVENALAKARFASAHTGLPALADDAGLCVEAFGGQPGVQTAYYATQFGYDKGDANNVR ALLEQMEGIEDRRAAMVSTLVAVRSPQDPEPLIAVGRVAGEIARAPRGAGGFGFDPVM YIPAFGKTFAELPAEVKNAHSHRGRAAQQMLALMREHWFPGASKR" misc_feature complement(1072657..1073226) /locus_tag="Alide_1012" /note="NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-...; Region: HAM1; cd00515" /db_xref="CDD:29953" misc_feature complement(order(1072684..1072689,1072762..1072767, 1072771..1072773,1072879..1072881,1072978..1072983, 1073020..1073028,1073188..1073190,1073197..1073202, 1073206..1073208)) /locus_tag="Alide_1012" /note="active site" /db_xref="CDD:29953" misc_feature complement(order(1072975..1072977,1072984..1072986, 1072993..1072995,1073002..1073007,1073107..1073115)) /locus_tag="Alide_1012" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29953" gene complement(1073278..1074015) /locus_tag="Alide_1013" /db_xref="GeneID:10103045" CDS complement(1073278..1074015) /locus_tag="Alide_1013" /EC_number="2.7.7.56" /inference="protein motif:TFAM:TIGR01966" /note="TIGRFAM: ribonuclease PH; KEGG: dia:Dtpsy_0858 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2" /codon_start=1 /transl_table=11 /product="ribonuclease ph" /protein_id="YP_004125666.1" /db_xref="GI:319761729" /db_xref="GO:0000049" /db_xref="GO:0004549" /db_xref="InterPro:IPR001247" /db_xref="InterPro:IPR002381" /db_xref="InterPro:IPR015847" /db_xref="InterPro:IPR018336" /db_xref="GeneID:10103045" /translation="MDPTTPFARSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRV LCTASVEEKVPPHKRGSGSGWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIG RSLRAVFDLKALGERTLQIDCDVIQADGGTRTAAITGAWVAAHDAVGTLLAAGKVAAS PITGAVAAVSVGIVQGQPLLDLEYVEDVACDTDMNVVMTGAGHYVEVQGTAEGAAFSR REMDQLLALAEKGIAELVLLQQESLRN" misc_feature complement(1073287..1073991) /locus_tag="Alide_1013" /note="ribonuclease PH; Reviewed; Region: rph; PRK00173" /db_xref="CDD:178914" misc_feature complement(1073575..1073967) /locus_tag="Alide_1013" /note="3' exoribonuclease family, domain 1; Region: RNase_PH; pfam01138" /db_xref="CDD:189854" misc_feature complement(1073323..1073526) /locus_tag="Alide_1013" /note="3' exoribonuclease family, domain 2; Region: RNase_PH_C; pfam03725" /db_xref="CDD:190728" gene complement(1074083..1074985) /locus_tag="Alide_1014" /db_xref="GeneID:10103046" CDS complement(1074083..1074985) /locus_tag="Alide_1014" /inference="protein motif:PFAM:PF07228" /note="KEGG: dia:Dtpsy_0859 protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein" /codon_start=1 /transl_table=11 /product="stage ii sporulation protein e" /protein_id="YP_004125667.1" /db_xref="GI:319761730" /db_xref="GO:0004721" /db_xref="InterPro:IPR001932" /db_xref="InterPro:IPR010822" /db_xref="GeneID:10103046" /translation="MKFSVFQLSRRGGREKNEDRMGYCYTRASALFVLADGMGGHPRG EVAAQIAIQTVSAMFQHEARPVLHDVPEFLSAALLAAHHQILSYANHKGMLDTPRTTL VAAVTQGGCAHWIHCGDSRLYLVRGGELLMRTRDHSYQELRSAAMAGLGHANRNVLFT CLGSPTKPLFDTAGPVPLQEGDRLLLCSDGLWSQLDDAAIARQITRQAVSHAVPDLVE DALRRGGDASDNVTVVAMEWETPNTCEPAQAVTTDSISDEVFASTIQAGPLEGFTDDL DDAAIERSIAEINEAIRRTAARKA" misc_feature complement(1074284..1074979) /locus_tag="Alide_1014" /note="Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cd00143" /db_xref="CDD:29062" misc_feature complement(1074293..1074961) /locus_tag="Alide_1014" /note="Protein phosphatase 2C; Region: PP2C; pfam00481" /db_xref="CDD:189566" misc_feature complement(order(1074299..1074301,1074419..1074421, 1074872..1074880,1074929..1074934,1074944..1074946)) /locus_tag="Alide_1014" /note="Active site [active]" /db_xref="CDD:29062" gene complement(1074982..1075998) /locus_tag="Alide_1015" /db_xref="GeneID:10103047" CDS complement(1074982..1075998) /locus_tag="Alide_1015" /inference="protein motif:PFAM:PF00069" /note="KEGG: dia:Dtpsy_0860 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain" /codon_start=1 /transl_table=11 /product="serine/threonine-protein kinase-like domain protein" /protein_id="YP_004125668.1" /db_xref="GI:319761731" /db_xref="GO:0004672" /db_xref="GO:0005524" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR017442" /db_xref="InterPro:IPR020635" /db_xref="GeneID:10103047" /translation="MSKVKPAPLLPDTVIGGYRVVRKLAAGGFGVVYLAMDAEGQQVA IKEYLPASLVTREPGELLPKVPPEKLSLYRLGLKSFFEEGRSLAQISHPSVVSVLNFF RENETVYMVMNYLEGASLQDFIITARDLKTQKVFRESTIRSLFDEVLRGLRIVHQHKM LHLDIKPANIFITDDNRAVMIDFGAAREVLSKEGNFIRPMYTPGFAAPEMYRRDAQMG PWTDIYAIGACIYACMQGFPPNEAPQRQDKDRLTLALHKLRGIYSDNLIEVVEWCMAL DPLSRPQSVFALQKELSREGERRYTKLTVAEKMRMQFDSLVADTRKSLQKTGEATHPG ARSK" misc_feature complement(1075153..1075947) /locus_tag="Alide_1015" /note="Protein kinase domain; Region: Pkinase; pfam00069" /db_xref="CDD:189373" misc_feature complement(1075129..1075920) /locus_tag="Alide_1015" /note="Catalytic domain of Protein Kinases; Region: PKc; cd00180" /db_xref="CDD:173623" misc_feature complement(order(1075387..1075398,1075444..1075446, 1075453..1075455,1075486..1075488,1075492..1075497, 1075501..1075503,1075507..1075509,1075636..1075638, 1075642..1075644,1075654..1075665,1075711..1075713, 1075861..1075863,1075867..1075869,1075903..1075905, 1075915..1075920)) /locus_tag="Alide_1015" /note="active site" /db_xref="CDD:173623" misc_feature complement(order(1075453..1075455,1075486..1075488, 1075492..1075497,1075501..1075503,1075507..1075509, 1075642..1075644,1075654..1075665,1075711..1075713, 1075861..1075863,1075867..1075869,1075903..1075905, 1075915..1075920)) /locus_tag="Alide_1015" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature complement(order(1075387..1075398,1075444..1075446, 1075495..1075497,1075501..1075503,1075507..1075509, 1075636..1075638,1075642..1075644,1075915..1075917)) /locus_tag="Alide_1015" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature complement(order(1075387..1075398,1075438..1075458)) /locus_tag="Alide_1015" /note="activation loop (A-loop); other site" /db_xref="CDD:173623" gene 1076094..1076987 /locus_tag="Alide_1016" /db_xref="GeneID:10103048" CDS 1076094..1076987 /locus_tag="Alide_1016" /inference="protein motif:PFAM:PF08340" /note="PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; KEGG: ajs:Ajs_0926 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125669.1" /db_xref="GI:319761732" /db_xref="InterPro:IPR005229" /db_xref="InterPro:IPR013527" /db_xref="InterPro:IPR013551" /db_xref="GeneID:10103048" /translation="MTGYASVQLAMAPEAEGRAGSARRLGLEIRSVNSRFLDLSLRLS DELRAQEPALRALLTQQLKRGKVEVRAFVDTDESAALAEPTPRLLQRLGAVQDAVRSW LPDAAPLTVAEALRLCANAGAPAQDWSAPMLELAQRALDDMVAAREREGERLAAMLQD RLAQLRALARQAAPLVPQLVEQQRQRFMERWREAMQLAEGTAVPEAAQDRALSEATAF AIRIDVAEEITRLQSHLDEIERLLKKGGEVGKRLDFLIQELHREANTLGSKSAAMDLT RISVDMKVLIEQMREQVQNIE" misc_feature 1076094..1076984 /locus_tag="Alide_1016" /note="hypothetical protein; Provisional; Region: PRK11820" /db_xref="CDD:183325" misc_feature 1076094..1076525 /locus_tag="Alide_1016" /note="YicC-like family, N-terminal region; Region: YicC_N; pfam03755" /db_xref="CDD:146410" misc_feature 1076733..1076984 /locus_tag="Alide_1016" /note="Domain of unknown function (DUF1732); Region: DUF1732; pfam08340" /db_xref="CDD:149411" gene complement(1077019..1080456) /locus_tag="Alide_1017" /db_xref="GeneID:10103049" CDS complement(1077019..1080456) /locus_tag="Alide_1017" /inference="similar to AA sequence:KEGG:Cagg_1487" /note="KEGG: cag:Cagg_1487 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125670.1" /db_xref="GI:319761733" /db_xref="GeneID:10103049" /translation="MQGDLSRETFDPRSHYTAVRLQQGRVLTDADFNEQGDITRHRHE RLARDVIGASGGPAEGAGFALTGGMRALAVHALDANNVWIAGEDGVLLVSSNGGGAWT VADTGSTRHLRAIARAAATGWAVGDGGTIARTTDAGATWAAQGSGTLQTLRGVAAFDA QRAWAVGDGGLALATTDGGATWTQHATGVARLYAVAFTSAQNGLAVGQGGAIVRSSDG GQSWARVDGGTTATLRAVMLNGAQALAAGDGGTLLVSNDGGATWSAATSGSTARLRAL RMRNATTGWAAGDGGTLLATNNGGTTWTAQPVAGGPMLTGLSVAGSADAWLVGAGQVW RVAAGGAGAPATLPAASLLIGPGCYYVQGQHCVWEQGASLANQPDGGVAQRLAPGTYL IYLRAWQRHIGALEDPAMREVALGGPDTATRARQVAQVRALALPAPPNNTPWTCGAAI AGWDALAAPPGARLAARATPQLAATGVCDIAASAGYRRLENQLYRVEIHSVDANTGAA TFKWSRENGSVAYAVQSIAVDTVAQLTTVRVAARGRDANLDLAPHDRVELVDDAAALQ QRAGQLFEYLNDGDDALELVLAGVPTGSLGQDTGLHPLLRRWDQRPTAAGQNALAVVE GSWIPLEDGVEVRFAPGGSYRVGDYWQIPARTATADVEWPLDDDGAPLVRPPAGVQDG WARLGLVTVNAAGLIGAVTDCREWFPQLTRLTQLLYVGGDGQEAIPGAAVAEPLRVRV VRGALPVEGARVRFTVEAGGGTVGSPAAGVTDATTDAAGQAACPWTLGAAGPQRVRAH LLGSDGDPVAGQTLVFAAMAQANVQAGGGCAVTIGKGGNFEQLSTELLQKLLKERGGQ LCICFLPGQHALDGLSIKQSDAPMRLSLHGCGPTAVVDVAGPIALGGFAALELRDLQL AMAPKAMLQLTNNAQLGLHGLRIDGKQEAPQPWVVVDGTAELRMHQCEVAAAAPASVV VQNAQGLCEIMHSQIAGDLAFYGMPGTDAAGAAPPAAALVNALNNGDFQVPAGRGQLV VAHNQLARLNLGQDMVKQLIARKFDGLFHTVVLQGNSLGAAPSLCAGVFMSVTGNHFT ATKPTGNLYGAMVGRRAAASGNVGELVGDTATLYFLVTKGQFRGAANMVFTLPQSTA" misc_feature complement(1079686..>1080210) /locus_tag="Alide_1017" /note="Ycf48-like protein; Provisional; Region: PRK13684" /db_xref="CDD:184241" gene complement(1080477..1082774) /locus_tag="Alide_1018" /db_xref="GeneID:10103050" CDS complement(1080477..1082774) /locus_tag="Alide_1018" /inference="similar to AA sequence:KEGG:Cagg_1488" /note="KEGG: cag:Cagg_1488 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125671.1" /db_xref="GI:319761734" /db_xref="GeneID:10103050" /translation="MSLLTPERLYQLLPAIHRLRDAEQGQPLRALLAVIEQELTALET DTARLYDNWFIETCDEWTVPYIGDLVGARPIRPVPSAGVSARAWVANTLAYRRRKGTA LVLEQLARDVTGWPASAVEFFQRLATTQHMNHVRLASAATASVRDAARADLARASAGA FDPFAHLLEVRNADTAGGRFNIPNVGIFLWRLRAQPLGRGAPGDADADFISARRNAAG WWHMHPAGVDAPLFNLPRTETGGAVTQAAREENAGAPLRPLALHAELERLRAGDAGTT PVFMTGHDPVLRVFVRLAGEALPVEIAREGLWICDIPDAVTLPVPPRVAAIDVQRGRM AFPAALDVQQVWLHAAHGSAADIGGGPYDRGDALRAASASLSEGTAAQGDAGGFFDPA VWQVGVTHLLPLGATGTLFATLRDAVQAWNALPAGRTGVIVLMDSLTESDAAPLAVNI AEGSRLMIVSGQWPPTPVANALPGTMARQPGRFEARQTRAHWQGRLQVLGTAAADALD PGALFLNGLLLQGPLDISGPLGQVELAHCTVLPGGTHITVGSDSPRLALRVLSSLAAP ITVAGPVGSVAVADSIVGLQDAGAAALSAPQAPLDLLRASFLGAVHGLTISASDCIFD APAVAERRQTGCVRFCYVPPASAVPRRYRCQPQLETDARIAALRAAALAAGLPPPTAA EEDAVRAEVEATVRPLFTSRRYGAPGLVQLDLRCAAQIRTGAESGAEMGAYERLRQPQ REANLRDALAEYLRLGLTAGVYFAN" gene complement(1082771..1085686) /locus_tag="Alide_1019" /db_xref="GeneID:10103051" CDS complement(1082771..1085686) /locus_tag="Alide_1019" /inference="similar to AA sequence:KEGG:BRADO4376" /note="KEGG: bra:BRADO4376 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125672.1" /db_xref="GI:319761735" /db_xref="InterPro:IPR011749" /db_xref="GeneID:10103051" /translation="MSDDTLAGCHCCEGQQPREPIYNAPGLPALAWRVDTQPGFHQRM LAGLPLWHPGEPDPSAPRPLAALGTRETDDATVALVDAAACMADVLSFYQERIANEGF LRTATERRSVLELARAVGYELRPGVAAGVHLVFTVEDAPGAPGVCTIAAGTPIQSVPP QDKLPQVFETSEELLARAEWNALRPRLARPADMALLDVAGDSRRLVLLLPQGSMPSGT DGLHPGLASGDLYRLDPGLPVDATVDALEVARVYLGADANTIQAGDLLLFVGKNGAAL RQMVLRATEVEDEKALQRVRIGLEPLPDPVAPAAPPRLQWHVPVGVLSFGNFAQAQLE SVSFTSGNIANTISGHAWQESELQAMVTIQGWSSLQLVQAVAASLHPPATPVAPEAGA FSFGARLGFFGNNAPQWNSLPASNTKGSAAYYPTNWDSTNPSVWTDSQGAALTPQHAY LERPVPGLVPGSWVVLDSPSVKAGTYALYDAREAARADYGLSGRAMALRMAGSDGKPL PAPPAEAFKFRDTTAHVASRRQPLVDLPIEAPVAAGTVRVELSTMVLGLARGKPLAFV GPRSDIPGVDAAEIAVLDDVVHANGRSTLVLKDKNGLQFSYVREGLRIHANVVAATHG ESVQEVLGNGNAAQAFQQFTLRRPPTTHLSAASAAGAQSTLALRVNGLLWSERPSLYG AGPDEHVFATRIDNEARMSLLFGDGRQGARLPTGQMNLRASYRTGLGRDGEVAAGTLT MPRAMPLGLRGVTNPLPAGGAQDPEKLEDARRNAPLTLLAFERVVSLPDYQDYARAFP GIGKARADLVSAGGALRVLVSVLGATGGAPDGEVLGNLRKAIADQSDPSQQFELAAAA LRYFRCSASLVIDPQYETDAVLADGRARLLQAYGFDARDLAQPVTAAAVQALLHQVPG VVAVELQVLQPYGEGAASDGALQVLPAFGARWNAGAMQPAELLLINPAAVQLLEAKP" misc_feature complement(<1085228..1085419) /locus_tag="Alide_1019" /note="baseplate wedge subunit; Provisional; Region: 6; PHA02553" /db_xref="CDD:177387" misc_feature complement(<1083251..1084090) /locus_tag="Alide_1019" /note="baseplate wedge subunit; Provisional; Region: 6; PHA02553" /db_xref="CDD:177387" misc_feature complement(1082918..>1083667) /locus_tag="Alide_1019" /note="Baseplate J-like protein; Region: Baseplate_J; cl01294" /db_xref="CDD:174609" gene complement(1085683..1088175) /locus_tag="Alide_1020" /db_xref="GeneID:10103052" CDS complement(1085683..1088175) /locus_tag="Alide_1020" /inference="similar to AA sequence:KEGG:Chy400_2341" /note="KEGG: chl:Chy400_2341 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125673.1" /db_xref="GI:319761736" /db_xref="InterPro:IPR011749" /db_xref="GeneID:10103052" /translation="MTTQQYLCKNPRRIAALRAAALETPPRWFNGIEYLEVMHGEPRL VLHFAHDLSQAPAVPLAASNVEVRGGQRVRDPRVLNVAASGRQLAVELDGTGDFSRYT LRLVASAGSDAPPDGIDPALAQIAFGFKVDCPSDFDCRAAGSCAPEIPHVPDIDYLAR DYQSFRRLTLDRLSVLMPGWRERNPADLLVTLAEALAYRADEIAYFQDAVATEAYLGT ARQRVSVKRHARLLDYAVHEGCNARAWVAFEVDATADGRQLAACDAATGLDGTLLLTQ AAGAGRRLLSRAQARDLVRSGAQPFELLTPLTLYSAHNDLRFYTWSDEACCLPRGATR AFLRDDTAHRLRLRAGDLLLLEARTGTTNGLAQDADPLQRHVVRLTRVDPEAGADRTP APTPRHDPVTGQPLVEVLWAAGDALPFDLCLSKVIGGTLVQDMACACANIALADHGMS PEHSQPLLPVPGGRVPRMRPADGSLLPATRQGLVRDALGQLTLVDAAAPATAALGREP ADTREAMQVTSDGDGRTWSARRDLLGSDAQAADFVVETGDDGGVLLRFGDGVNGRRPG ALERLSLRMREGSGSAGNVGNVGAGTIAHVLCGFDGITRVRNPLAASGGAAPLALARA RMDAPQAFRRQERAVTPEDYATVAMRDPRVQRAVATRRWTGSWHTMFVTVDRRGGEGV DPAFEDSINAFIDRFRLAGHDVEIDAPAYVALDIALHICARPGYFAADVEQRLLQRFG TAPGGFFDPDRYSFGEPVYLSAVVAAAMAVPGVAFVKPLRFRRLGHADAGEIGAGRIT MARLEIARLDNDPNAPQNGKIAFQVHAMGGTP" misc_feature complement(<1087420..1087710) /locus_tag="Alide_1020" /note="Baseplate J-like protein; Region: Baseplate_J; cl01294" /db_xref="CDD:174609" misc_feature complement(1085905..>1086657) /locus_tag="Alide_1020" /note="Baseplate J-like protein; Region: Baseplate_J; cl01294" /db_xref="CDD:174609" gene complement(1088172..1088540) /locus_tag="Alide_1021" /db_xref="GeneID:10103053" CDS complement(1088172..1088540) /locus_tag="Alide_1021" /inference="protein motif:PFAM:PF04965" /note="PFAM: GPW/gp25 family protein; KEGG: cag:Cagg_1491 gpW/GP25 family protein" /codon_start=1 /transl_table=11 /product="gpw/gp25 family protein" /protein_id="YP_004125674.1" /db_xref="GI:319761737" /db_xref="InterPro:IPR007048" /db_xref="GeneID:10103053" /translation="MNTYVAFPYHTDGRGRTGEATRTAWLHGLIEQLLFTVPGERVNR PDFGCGLMQLVFAPNSPELAVTVQALVQASLQQWLGHLLRIDAVAASSEDATLTVAVR YTVLETQQAGEASFTRSLSS" misc_feature complement(1088202..1088453) /locus_tag="Alide_1021" /note="Gene 25-like lysozyme; Region: GPW_gp25; cl01403" /db_xref="CDD:194124" gene complement(1088544..1088864) /locus_tag="Alide_1022" /db_xref="GeneID:10103054" CDS complement(1088544..1088864) /locus_tag="Alide_1022" /inference="similar to AA sequence:KEGG:Acid345_0852" /note="KEGG: aba:Acid345_0852 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125675.1" /db_xref="GI:319761738" /db_xref="GeneID:10103054" /translation="MPGPLLHLGATVLCAHGGQATPSAPVVRVLVSGQPVATQAAPWL VAGCAFSPPQGNGPCITAQWVVAATRVFAAGQPVLLMSGQGICTPTGTPLIPVAAQTR VLGV" gene complement(1088875..1089384) /locus_tag="Alide_1023" /db_xref="GeneID:10103055" CDS complement(1088875..1089384) /locus_tag="Alide_1023" /inference="similar to AA sequence:KEGG:NIDE2232" /note="KEGG: nde:NIDE2232 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125676.1" /db_xref="GI:319761739" /db_xref="GeneID:10103055" /translation="MNDKFYGKYRGMVLNNIDPMQIGRLQVQVPDVTGLVPGTWAMPC VPVAGMQNGMFALPMIGSGVWIEYEQGDPDHPIWVGCFWGSAAEVPALARATPPGVQA FTLQTTLQNGLTISDLPGPTGGIMLKSATGATLVVNDTGIYIQNGKGASLVMTGPTVN INAGALTVV" misc_feature complement(1088878..>1089336) /locus_tag="Alide_1023" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: VgrG; COG3501" /db_xref="CDD:33304" misc_feature complement(1089115..1089318) /locus_tag="Alide_1023" /note="Phage-related baseplate assembly protein; Region: Phage_base_V; cl11432" /db_xref="CDD:164221" gene complement(1089396..1090538) /locus_tag="Alide_1024" /db_xref="GeneID:10103056" CDS complement(1089396..1090538) /locus_tag="Alide_1024" /inference="similar to AA sequence:KEGG:NIDE2231" /note="KEGG: nde:NIDE2231 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125677.1" /db_xref="GI:319761740" /db_xref="GeneID:10103056" /translation="MFAQGIQLTLLVGPIVPLPVPRAVLDALQSVEVRTAAGNASGFQ LTFTITARSELNTIFLLAAGTNTGMATPPLRVLLVLTMNGSAQPLFDGVMTHVEVQPG GRGQAGTLTVTGEDVTKAMDMQDWSGLPFPAVPVEGRVALLCAKYAPFGLIPMVIPVL FPDVQIPIDKIPAQQGTDLAYIQELARQVGYVFYVEPGPAAGTNIAYFGPEIKVGVPQ PALNLDMDALTNVESLSFSFDATKGVLPVVFIQNQFTRAPIPVPIPNLNPLQPPLAAL PTPIANLKPLKDTAKMSPMRAISAGLAEAATSQDAVSGTGSLDVLRYGHVLKARGLVG VRGAGVVYDGLYYVKSVTSKIKRGEFKQSFELTRNGLVSITPTVPV" misc_feature complement(<1089945..>1090280) /locus_tag="Alide_1024" /note="Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954" /db_xref="CDD:147871" gene complement(1090541..1090903) /locus_tag="Alide_1025" /db_xref="GeneID:10103057" CDS complement(1090541..1090903) /locus_tag="Alide_1025" /inference="similar to AA sequence:KEGG:Acid345_0855" /note="KEGG: aba:Acid345_0855 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125678.1" /db_xref="GI:319761741" /db_xref="GeneID:10103057" /translation="MADPIAAFLQANGLAQPAFAPDSRYHGLPTAQARLPDGRTVAYV TRRFLPPPESFATVQTVTLAAGQRADQLAAQYLGSAEQWWRLADANGAMLPEAMVARP GSVLRITLPEGVPPPAES" gene complement(1090906..1091562) /locus_tag="Alide_1026" /db_xref="GeneID:10103058" CDS complement(1090906..1091562) /locus_tag="Alide_1026" /inference="similar to AA sequence:KEGG:NIDE2229" /note="KEGG: nde:NIDE2229 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125679.1" /db_xref="GI:319761742" /db_xref="GeneID:10103058" /translation="MTISSSPKLTKGGIVLIDPETAQVQRVIALQYNAESLKRELKSQ ESGGDAGADRAEPTRFKGPAVETISFEADLDATDQLEFPDQNAAAVAYGIAPQIALLE SLSQPSSAQLGKVNSQASSGTLEIAPMLAPLLLLVWGAGRVIPVKLTSFSVTEEAFDP ALNPIHAKASLSLRVLTVDDLGFASKGGSLFMTYLQNREQLAAKAQPASLSTLGVTGV " gene complement(1091579..1092934) /locus_tag="Alide_1027" /db_xref="GeneID:10103059" CDS complement(1091579..1092934) /locus_tag="Alide_1027" /inference="similar to AA sequence:KEGG:sce1839" /note="KEGG: scl:sce1839 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125680.1" /db_xref="GI:319761743" /db_xref="GeneID:10103059" /translation="MTHERDHKPAADAAVPRRDSRPARGEEAANRLVGKPGDELPASV RQPMQARFDVDFANVRVRSDRAAAEAASALGSRAFTIGRHIAFNHGEYKPASPAGQRL LAHELAHVAQQRDADSGRATLRRDAHDEHEANTAADRAVKGLPAKVGGAPRAGSPHIQ ADDGKGAGAQDKADDKPAGQAPAGTRITFVMRAPDDAYTQDVTDYVQNTLGEKVVVVD NIQEAAEYAAKYAKDNKTKVGEIRIIGHGSTTGGIKMTPKGEADRRFVTAQELSDMAA DQKVASIAKDAMAPGATVEFYGCYVGRSEETGKAVGTIFGGAQFKAIDSTLRTSNERF ARRADKDEDGEEVNTRHGKERVVEVKSSQEIDDRVAKGDKALGKTFDKWLLDRARQME ADGDLPPQKDDAARIAAMREVFDRSGGKIKRLEIHTDKETLHKSDKRKWVRKWKTTKV N" gene complement(1093110..1093376) /locus_tag="Alide_1028" /db_xref="GeneID:10103060" CDS complement(1093110..1093376) /locus_tag="Alide_1028" /inference="similar to AA sequence:KEGG:NIDE2225" /note="KEGG: nde:NIDE2225 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125681.1" /db_xref="GI:319761744" /db_xref="GeneID:10103060" /translation="MNRIVLHIDRLVLRGIDPADTPALAAALHDALAQQLAAPGAAAV LPSLPAAARLRAGRVTLAADGDAGAHGQALGQAVARLLMPGVGT" gene complement(1093373..1095898) /locus_tag="Alide_1029" /db_xref="GeneID:10103061" CDS complement(1093373..1095898) /locus_tag="Alide_1029" /inference="similar to AA sequence:KEGG:sce2110" /note="KEGG: scl:sce2110 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125682.1" /db_xref="GI:319761745" /db_xref="GeneID:10103061" /translation="MIAAYAAAKPVLQRKCACGGKSRCPACEARKRLGTDLGLQPRSA PAQDGAATAEAAQSLVQGTLRGPGQPLDRATRLAMEPLFGHDFGRVRVHADAQAQASA QAVGALAYTVGQHIVFGPGQRPAAGPLLAHELAHTVQQQGTTGSLQRLAIDGADSAME HEAEAAAQRVAAGRPAQVRLRAGSSRLHRVPVSNEAAGGCGICYDTAYPGQGPANAGR VAHTVVQAAFLGLGTGMAAARLDEMPFSAPGDENGRLDLVQATPTGLAIGEIKPSTPA GLAQGVKDLAYYMEQVQAVYPDRTITPLVAAIRVGNGLTMPDPLAQAAGCAQQKLGVH LMEPGIFGYFCTPPYSQARSRCPCRKQPPPPVPVPVEKDVKVKERKPARKDSQERAPG GSLVPAFAAALAATATLATLASKLKGLAKSRLLAAASAVAIVALLAKGAEASIGPGED PIETLIKSGDATGQPIPDDIKEALRKDDRLRKLLTEAARTGNYDAARREAAEQLTRVV AQNLDAFSDEELQALLQATDGVKGQMPQGEVTVEQIRQRIAARQRGGGAGSGAGPAAP AGDSGSGSGSGSAATHEEPAAPETAPDAAPPARPQPAQAPAERLVEGMARPAAGGPRF TESARNKLLEAARAMQPPLTDAEVDELLRRMGPATGKTEDQVVESLRQGMAALRAGKA AQDSPAADPAPASPDATPPPAADQDSLGDPQVVPADPAKPPTRTDKDVIPIYDEVLAK LEWIQPGNSYLLMNKPPYLSRHSYPMTHFGRDSQGRLFVGSVMVRIDKQAGNQWTVTL QAGAPLYTTGRRYGTTRTRSATVTAPAAALGTGPAKPAKGAKP" gene complement(1095895..1097835) /locus_tag="Alide_1030" /db_xref="GeneID:10103062" CDS complement(1095895..1097835) /locus_tag="Alide_1030" /inference="protein motif:PFAM:PF00004" /note="KEGG: nde:NIDE2224 ATPase; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="aaa atpase central domain protein" /protein_id="YP_004125683.1" /db_xref="GI:319761746" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="GeneID:10103062" /translation="MNAPDRVTDWSTANQQLLVAEFARLRALLGEEAPQGAASADAQI ALARSRMPAPAAIDTLAALFQLSPFERDLLLLAAGVEMDARLAALCAQAGAAQRPWAS FGIALAVLPDAHWSALSPDAPLRRWRLLEPDEGAGLVNARLKIDERVLHYLAGLNRLD QRLQALLYPVPHDAPPLSATQSAGVQQLLSLWQAVPQTIVLEGDDATGQRDLACALAE GLGAGLYQLNGMDMPADAAEQAAFAALWGREAALLGAGLLVQCDGAGPERQAAALRLA RHLPGLVLLAANAWPASDLPCHRLRLDPPEAPERRALWLAALEELGTPIAAPALDTLA SQYRLGARRIAEITRQAHTRNPRGDAAALHHIAREEAGRHAALPALTQTIKPHASWAD LVLPAAQQQLLRQIVAHARHRLTVHHAWGFANQDARGLGLATLFWGDSGTGKTLAAEV MASELSLNLVRVDLSAVVSKYIGETEKNLRRVFDSAEQAGALLLFDEADALFGKRTEV KDSHDRYANIEVSYLLQRMEAYCGLAILTSNHKAALDPAFQRRLRFVVHFPFPDQEQR EGIWRAVFPQAAPLAADVDFARLARLDATGGSIRNMALAAAFLAAEAGTAIGMVQLMQ AARTEGAKRERPFSEAELRSWA" misc_feature complement(1096153..1096533) /locus_tag="Alide_1030" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene complement(1097832..1099169) /locus_tag="Alide_1031" /db_xref="GeneID:10103063" CDS complement(1097832..1099169) /locus_tag="Alide_1031" /inference="similar to AA sequence:KEGG:NIDE2223" /note="KEGG: nde:NIDE2223 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125684.1" /db_xref="GI:319761747" /db_xref="GeneID:10103063" /translation="MSTALAIAGVTAVLRDLLNDGLINHDISSVLGSSVTVSVQAPDR VVAANAAEASQLNLFMYLVTPNPGWRNEGLPGRDGSGRTRLSNPPLALDLHYLLSAYS GADLHAEILLGYAMQLLHETPVLTRAAIRAALVPSPPVGNTLPPALRALADAGLAEQL ELIKITPVMQTNEELSKFWTATQSHLRPSAAYTASVVLIQAQQPARSALPVLARGPRD AQGRETGIAVQPGLEARLPLLTRAEPPAGQTVAGIGDLVALHGQALDGADRRVRLESD VWQVALEIAAEPAQPPDRPVATTAAFSLAGLAAALPVGIYRVTLDATRPDMLNQPRRM SSNRLALTLAPRITNLPQTVARAGDGSATITLQFTPELRSGQHATLVLGSNEVAPLAT GATPSSLQFRIPGAAPGSYLARLRVDGIESPIVDMDLSPGDTPHFLNLAVSIT" gene complement(1099166..1099906) /locus_tag="Alide_1032" /db_xref="GeneID:10103064" CDS complement(1099166..1099906) /locus_tag="Alide_1032" /inference="similar to AA sequence:KEGG:TWT151" /note="KEGG: twh:TWT151 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125685.1" /db_xref="GI:319761748" /db_xref="GeneID:10103064" /translation="MNGLLQRLAARATGSAWTVRSDARLPFAGALSIVQAQAVEPSEP AAAPRPVQASESRAAIEQQAVPSAAEPAHSARPPAARTRQMATTQDSATTAPRPEQKP ASAPHAEADPAGPTGLDDMAHTTETVAAPTTARHVSPAHAQSPAAYADPAPLLPTGKA PEAIATPHVRAAAAHPDTLRAPHVLPPPWTPSPTQAAPAEPAEVHVHIGRIEVTAIAQ PRPPRHAARERAQPLSLDAYLARRKEPS" misc_feature complement(<1099286..1099828) /locus_tag="Alide_1032" /note="Topoisomerase II-associated protein PAT1; Region: PAT1; pfam09770" /db_xref="CDD:192374" gene complement(1099903..1100622) /locus_tag="Alide_1033" /db_xref="GeneID:10103065" CDS complement(1099903..1100622) /locus_tag="Alide_1033" /inference="similar to AA sequence:KEGG:sce2087" /note="KEGG: scl:sce2087 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125686.1" /db_xref="GI:319761749" /db_xref="GeneID:10103065" /translation="MRVLDAAELLSLWERGTPRHALDRAALLAAAARPDWPADAIADL PLGAIGASLLHLRAANFGPHIDAHADCRHCGQRLAFALDVAELLRDAPPEEADGRPMP MAEAAGLRIRAPSLRDLAAVAGLASEDAADALLARCTLAGQPDAIDAATRAQVDEALE ALDPQADLAFALTCVGCGRQDMAQLDTAALLWDEISIRAGALLQEVHRLASSYGWSEE QILALSATRRAHYLALVEGES" gene complement(1100639..1101163) /locus_tag="Alide_1034" /db_xref="GeneID:10103066" CDS complement(1100639..1101163) /locus_tag="Alide_1034" /inference="protein motif:TFAM:TIGR02241" /note="TIGRFAM: conserved hypothetical protein; KEGG: cag:Cagg_1504 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125687.1" /db_xref="GI:319761750" /db_xref="InterPro:IPR011747" /db_xref="GeneID:10103066" /translation="MAQFSVNATRFDPYKNFKFRVKWDGKYVAGISKVGALKRSTEPV EHREGGDPSTSRKSPGRTKYEAITLERGVTHDTEFEKWANKVWNYGSGLGAEVSLKDF RKDLIIEVYNEAGQLALAYKVFRCWVSEYQALPDLDANANAVAIQHIKLENEGWERDY DVGEPSEPSYTEPA" misc_feature complement(1100693..1101121) /locus_tag="Alide_1034" /note="T4-like virus tail tube protein gp19; Region: Phage_T4_gp19; cl12125" /db_xref="CDD:164331" gene complement(1101179..1103071) /locus_tag="Alide_1035" /db_xref="GeneID:10103067" CDS complement(1101179..1103071) /locus_tag="Alide_1035" /inference="similar to AA sequence:KEGG:Nham_0832" /note="KEGG: nha:Nham_0832 phage tail sheath protein" /codon_start=1 /transl_table=11 /product="phage tail sheath protein" /protein_id="YP_004125688.1" /db_xref="GI:319761751" /db_xref="GeneID:10103067" /translation="MPSTLSYPGVYVEEISSGVRTITGVATSVTAFVGYTRMGVPDKA VPITSFSDFERAYGGLDRDSPVSYAVRQFFANGGSQAIVVRVATGYASAAWTLQDSTP AAVLDVAAATPGAWGNGLRITVDHAGARNPDAQFNLVVSQLQADGVTLRPLETHRNLD MNSASPRYVESVVNNASALVTAKRKGGLVFNRAGYAVSTAVTFPLTATDLVIAGVVNG ATAFKLTLAGPAPGNMADLASAVNTAIGTAGLTAALQASESGADGGAGTGCLKLASLA SGESSSVVISGGAFGGLSGSIQLGLANGGREFTGNAQHRPADASNLVPPVKGVDGARA GATEIVGTPGSKTGMYALMDADLFNILSIPETFDMTDLQAAAVIPAAVDLCEKRRAFY IVDAPSGKNLSNIATWANGVTQSRNAAVYFPAVSLVDPLDELRPRAMAPSGSLAGVYA RTDANRGVWKAPAGTDATLNGVLDLASPLNDLENGQINPKGVNALRNFPAYGRVVWGA RTLKGSDAQADEYKYIPVRRLALFLEESLYRGTQWVVFEPNDEPLWAQVRLNIGAFLQ GLFRQGAFQGRSPREAYFVKCDSETTTQNDINLGVLNVIVGFAPLKPAEFVVIQIQQM AGQIQA" misc_feature complement(<1102634..1103050) /locus_tag="Alide_1035" /note="Phage tail sheath protein; Region: Phage_sheath_1; cl01389" /db_xref="CDD:194121" misc_feature complement(1101221..>1102084) /locus_tag="Alide_1035" /note="Phage tail sheath protein; Region: Phage_sheath_1; cl01389" /db_xref="CDD:194121" gene 1103463..1104083 /locus_tag="Alide_1036" /db_xref="GeneID:10103068" CDS 1103463..1104083 /locus_tag="Alide_1036" /EC_number="2.7.4.8" /inference="protein motif:TFAM:TIGR03263" /note="SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: dia:Dtpsy_0862 guanylate kinase; PFAM: guanylate kinase" /codon_start=1 /transl_table=11 /product="guanylate kinase" /protein_id="YP_004125689.1" /db_xref="GI:319761752" /db_xref="GO:0004385" /db_xref="InterPro:IPR008144" /db_xref="InterPro:IPR008145" /db_xref="InterPro:IPR017665" /db_xref="InterPro:IPR020590" /db_xref="GeneID:10103068" /translation="MDYPGNLFVVSAPSGAGKSSLVKALLELDSHVQPSVSHTTRAPR GQEKHGREYFFVSEQEFDAMVAANGFVEWANVHGRRYGTSRKAIEERVALGADVVLEI DYQGALQIKQAFVNAVLIFILPPSWEELRSRLERRGEDAADVIDLRLKNAEEEMAQAG KFDFVIINEVFERALFDLKTIVHAQRLKYAAQRRARADTFESLNIP" misc_feature 1103481..1103999 /locus_tag="Alide_1036" /note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and...; Region: GMPK; cd00071" /db_xref="CDD:73180" misc_feature order(1103496..1103498,1103514..1103516,1103562..1103564, 1103583..1103585,1103592..1103594,1103619..1103621, 1103688..1103690,1103703..1103705) /locus_tag="Alide_1036" /note="catalytic site [active]" /db_xref="CDD:73180" misc_feature order(1103496..1103498,1103514..1103516) /locus_tag="Alide_1036" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:73180" gene 1104103..1104306 /locus_tag="Alide_1037" /db_xref="GeneID:10103069" CDS 1104103..1104306 /locus_tag="Alide_1037" /inference="protein motif:TFAM:TIGR00690" /note="KEGG: dia:Dtpsy_0863 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, omega subunit" /protein_id="YP_004125690.1" /db_xref="GI:319761753" /db_xref="GO:0003899" /db_xref="InterPro:IPR003716" /db_xref="InterPro:IPR006110" /db_xref="GeneID:10103069" /translation="MARITVEDCLEQIPNRFQLVLAATYRARMLSQGHAPKIESRNKP AVTALREIAAGKVGLEMLKKVPG" misc_feature 1104103..1104300 /locus_tag="Alide_1037" /note="RNA polymerase Rpb6; Region: RNA_pol_Rpb6; cl14651" /db_xref="CDD:189264" gene 1104407..1106671 /locus_tag="Alide_1038" /db_xref="GeneID:10103070" CDS 1104407..1106671 /locus_tag="Alide_1038" /EC_number="2.7.6.5" /inference="protein motif:TFAM:TIGR00691" /note="SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: dia:Dtpsy_0864 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein" /codon_start=1 /transl_table=11 /product="rela/spot family protein" /protein_id="YP_004125691.1" /db_xref="GI:319761754" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR004095" /db_xref="InterPro:IPR004811" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR007685" /db_xref="GeneID:10103070" /translation="MNLGSNKATVASAQVQPAAPANPSAAAANAAAASFAALMEKLDY LDSAGIEQVRQAYRYADAAHLGQLRNSGEPYITHPIAVAALCASWKLDVQALMAALLH DAMEDCGITKADLIDRFGPQVADLVDGLTKLDKLQFNTREENQAESFRKMLLAMARDV RVILIKLADRTHNMRTLSDMPRSKWGRISSETLEIYAPIAHRLGLNQTYRELQDLAFR HLHPWRYATLSKAVTKSRNRRRDIVQKVQTDVDAAFSRLGMAVRLAGREKTLFAIYQK MNLKHLSFAQVTDLYGFRVIVHSVTDCYTALGVLHQMYKPVPGKFKDHIAIAKLNGYQ SLHTTLVGPAGLNIEFQIRTEEMHIVAEAGVAAHWLYKAQNAEGAAAERLGTKWLQSL LDIQNETRDAAEFWDHVKVDLFPDAVYVFTPRSQILALPRGATAVDFAYAIHSDVGDR TTAVRINDEQVPLRTELKNGDVVEVITTAGAHPNPAWLAFVRTGRARSKIRHYLKTLA QNESAGLGEKLLTQALRAEGMEQLPDAQAHAAIWEKLLRFTGNRTRVELMTDVGLGKR IASIVAKRLVLLLSEGGQRPDALLLTRERYSAHEKVSQGSITLDGSENASVQYASCCR PVPGDAIVGYLGRGEGLVVHHAQCGVAKKLQHKDGERFIAVDWAEEPTRTFETGITVT VTNGKGVLARVASELADCEADIVRVDMDDAMGTTDLRFVVAVRDLAHVEAVLRNLRRT HSVLRAFRVLPQPL" misc_feature 1104518..1106653 /locus_tag="Alide_1038" /note="Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]; Region: SpoT; COG0317" /db_xref="CDD:30665" misc_feature 1104629..1104928 /locus_tag="Alide_1038" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature 1105163..1105495 /locus_tag="Alide_1038" /note="Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399" /db_xref="CDD:143389" misc_feature order(1105202..1105204,1105208..1105210,1105271..1105276, 1105286..1105288,1105370..1105372,1105376..1105378, 1105391..1105393,1105397..1105399,1105403..1105405, 1105415..1105417,1105451..1105453,1105457..1105459, 1105463..1105465,1105487..1105492) /locus_tag="Alide_1038" /note="synthetase active site [active]" /db_xref="CDD:143389" misc_feature order(1105202..1105204,1105370..1105372,1105376..1105378, 1105391..1105393,1105397..1105399,1105403..1105405, 1105415..1105417,1105451..1105453,1105457..1105459, 1105487..1105489) /locus_tag="Alide_1038" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143389" misc_feature order(1105271..1105273,1105451..1105453) /locus_tag="Alide_1038" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143389" misc_feature 1105658..1105837 /locus_tag="Alide_1038" /note="TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named...; Region: TGS_RelA_SpoT; cd01668" /db_xref="CDD:133438" misc_feature 1106441..1106650 /locus_tag="Alide_1038" /note="ACT domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876" /db_xref="CDD:153148" gene complement(1106678..1107244) /locus_tag="Alide_1039" /db_xref="GeneID:10103071" CDS complement(1106678..1107244) /locus_tag="Alide_1039" /inference="protein motif:TFAM:TIGR01461" /note="KEGG: ajs:Ajs_0950 transcription elongation factor GreB; TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain-containing protein" /codon_start=1 /transl_table=11 /product="transcription elongation factor greb" /protein_id="YP_004125692.1" /db_xref="GI:319761755" /db_xref="GO:0003677" /db_xref="GO:0003711" /db_xref="InterPro:IPR001437" /db_xref="InterPro:IPR006358" /db_xref="InterPro:IPR018151" /db_xref="GeneID:10103071" /translation="MSKAFTKETDAGDDELALPAGIPAGGKNYITPQGYARLRAELLS LIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLEIAEVVDPS VHAGSDQIFFGATVTYVDDEGVERTVTILGVDEADNGLQQISWISPVARALLKAREGD EVSLQTPAGTRTLEILSVHYPDPQRGEG" misc_feature complement(1106702..1107175) /locus_tag="Alide_1039" /note="transcription elongation factor GreB; Reviewed; Region: greB; PRK01885" /db_xref="CDD:179345" misc_feature complement(1106951..1107163) /locus_tag="Alide_1039" /note="domain; Region: GreA_GreB_N; pfam03449" /db_xref="CDD:190636" misc_feature complement(1106705..1106926) /locus_tag="Alide_1039" /note="C-term; Region: GreA_GreB; pfam01272" /db_xref="CDD:189919" gene complement(1107343..1107419) /locus_tag="Alide_R0010" /note="tRNA-Arg4" /db_xref="GeneID:10103072" tRNA complement(1107343..1107419) /locus_tag="Alide_R0010" /product="tRNA-Arg" /db_xref="GeneID:10103072" gene complement(1107573..1107851) /locus_tag="Alide_1040" /db_xref="GeneID:10103073" CDS complement(1107573..1107851) /locus_tag="Alide_1040" /inference="similar to AA sequence:KEGG:Dtpsy_0866" /note="KEGG: dia:Dtpsy_0866 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125693.1" /db_xref="GI:319761756" /db_xref="GeneID:10103073" /translation="MRASHTPGRTAAWAIALCIFGLCSATCSHAATARPHQEAGAAAH APAKKSRSTKVKHQQNHSGESTAERDRRLYRECRGLPNAGACLGYTRR" sig_peptide complement(1107759..1107851) /locus_tag="Alide_1040" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.984 at residue 31" gene 1107976..1108332 /locus_tag="Alide_1041" /db_xref="GeneID:10103074" CDS 1107976..1108332 /locus_tag="Alide_1041" /inference="protein motif:TFAM:TIGR00952" /note="KEGG: dia:Dtpsy_0867 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15" /codon_start=1 /transl_table=11 /product="ribosomal protein s15" /protein_id="YP_004125694.1" /db_xref="GI:319761757" /db_xref="GO:0003735" /db_xref="InterPro:IPR000589" /db_xref="InterPro:IPR005290" /db_xref="GeneID:10103074" /translation="MVQDARRRPFQPTAQVTQGGRAPPAYKEIHMIAASIKAEVVKAN QRAENDTGSPEVQVALLTARINELTPHFKQHAKDHHGRRGLLRMVSRRRKLLDYLKAK DADRYTALIAKLGLRK" misc_feature 1108084..1108320 /locus_tag="Alide_1041" /note="Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole...; Region: Ribosomal_S15p_S13e; cd00353" /db_xref="CDD:48353" misc_feature order(1108084..1108086,1108135..1108137,1108144..1108146, 1108165..1108167,1108177..1108179,1108186..1108188, 1108198..1108200,1108204..1108209,1108213..1108218, 1108255..1108257,1108267..1108269) /locus_tag="Alide_1041" /note="16S/18S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:48353" misc_feature order(1108150..1108152,1108159..1108164,1108171..1108173, 1108180..1108182,1108300..1108302,1108312..1108314) /locus_tag="Alide_1041" /note="S13e-L30e interaction site [polypeptide binding]; other site" /db_xref="CDD:48353" misc_feature order(1108240..1108242,1108252..1108254,1108315..1108320) /locus_tag="Alide_1041" /note="25S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:48353" gene 1108563..1110758 /locus_tag="Alide_1042" /db_xref="GeneID:10103075" CDS 1108563..1110758 /locus_tag="Alide_1042" /EC_number="2.7.7.8" /inference="protein motif:TFAM:TIGR03591" /note="SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: ctt:CtCNB1_1057 3' exoribonuclease; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein" /codon_start=1 /transl_table=11 /product="polyribonucleotide nucleotidyltransferase" /protein_id="YP_004125695.1" /db_xref="GI:319761758" /db_xref="GO:0003723" /db_xref="GO:0004654" /db_xref="InterPro:IPR001247" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR012162" /db_xref="InterPro:IPR015847" /db_xref="InterPro:IPR015848" /db_xref="InterPro:IPR018111" /db_xref="GeneID:10103075" /translation="MTMFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLA TVVASKNAKPGQDFFPLTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIR PLFPEGFYNEVHVVIHTISLNPEVDADIAAMIATSAALSVSGIPFNGPIGAARVGYIN GEYVLNPGQTARKNSQMDLVVAGTETAVLMVESEALQLPEDVMLGAVVYGHEQGKIAI DAIHELVRDAGKPVWDWQPEAKDEALIAKVAELGEGTLRAAYQNRNKQLRTQACREAY AAVKAGLTEQGVEFDAVKVDNMLFDIEARIVRSQILAGEPRIDGRDTRTVRPIEIRTS VLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFEDRFLFHYNMPPFATGEV GRMGSTKRREVGHGRLAKRALVACLPSKEEFPYTIRVVSEITESNGSSSMASVCGGCL SMMDAGVPMKAHVAGIAMGLIKEDNKFAVLTDILGDEDHLGDMDFKVAGTTAGITALQ MDIKIQGITKEIMQVALAQAKEARMHILGKMQEAMGEAKTEISSFAPKLFTMKINPEK IRDVIGKGGATIRALTDETGCQINIEEDGTITIAATEAAKADEAKRRIEEITAEVEIG KVYEGPVTKVLDFGALINLLPGKDGLLHISQIAHERVERVGDYLQEGQIVKVKVLETD DKGRVKLSMKALAERPAGLPEREPREPREPREPRGERRERRDNGAPEQQ" misc_feature 1108569..1110644 /locus_tag="Alide_1042" /note="polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824" /db_xref="CDD:183327" misc_feature 1108611..1108925 /locus_tag="Alide_1042" /note="3' exoribonuclease family, domain 1; Region: RNase_PH; pfam01138" /db_xref="CDD:189854" misc_feature 1109007..1109201 /locus_tag="Alide_1042" /note="3' exoribonuclease family, domain 2; Region: RNase_PH_C; pfam03725" /db_xref="CDD:190728" misc_feature 1109289..1109528 /locus_tag="Alide_1042" /note="Polyribonucleotide nucleotidyltransferase, RNA binding domain; Region: PNPase; pfam03726" /db_xref="CDD:146390" misc_feature 1109541..1109936 /locus_tag="Alide_1042" /note="3' exoribonuclease family, domain 1; Region: RNase_PH; pfam01138" /db_xref="CDD:189854" misc_feature 1109949..1110155 /locus_tag="Alide_1042" /note="3' exoribonuclease family, domain 2; Region: RNase_PH_C; pfam03725" /db_xref="CDD:190728" misc_feature 1110225..>1110332 /locus_tag="Alide_1042" /note="Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393" /db_xref="CDD:29003" misc_feature order(1110255..1110257,1110261..1110269,1110273..1110287, 1110294..1110299,1110306..1110311,1110324..1110332) /locus_tag="Alide_1042" /note="putative nucleic acid binding region [nucleotide binding]; other site" /db_xref="CDD:29003" misc_feature 1110276..1110287 /locus_tag="Alide_1042" /note="G-X-X-G motif; other site" /db_xref="CDD:29003" misc_feature 1110432..1110635 /locus_tag="Alide_1042" /note="S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA...; Region: S1_PNPase; cd04472" /db_xref="CDD:88437" misc_feature order(1110456..1110458,1110480..1110482,1110510..1110512, 1110516..1110518) /locus_tag="Alide_1042" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88437" misc_feature 1110573..1110578 /locus_tag="Alide_1042" /note="domain interface; other site" /db_xref="CDD:88437" gene 1110869..1111873 /locus_tag="Alide_1043" /db_xref="GeneID:10103076" CDS 1110869..1111873 /locus_tag="Alide_1043" /inference="protein motif:TFAM:TIGR02824" /note="KEGG: dia:Dtpsy_0869 NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein" /codon_start=1 /transl_table=11 /product="nad(p)h quinone oxidoreductase, pig3 family" /protein_id="YP_004125696.1" /db_xref="GI:319761759" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="InterPro:IPR014189" /db_xref="GeneID:10103076" /translation="MKNVMQAVEISAFGPPEGLCLAERPLPQPGAGELLIRVAASGVN RPDVLQRKGHYAPPPGVSDLPGLEVAGVVESGDAAAMAQAGIRVGDRVCALVAGGGYA AYCVAPVAQCLPVPEGLSDVEAASLPETFFTVWSNVFDRARLQAGETLLVQGGSSGIG VTAIQLARARGATVIVTAGTDEKCAACLALGAHHAINYKSQDFVAEAQRITEGRGVDV VLDMVAGPYVAREVECLAEDGRVVIIAVQGGVKAEFNAALVLRKRLTITGSTLRPRPV AFKAAIAKALREQVWPLLASGAVKPVIHSTFAAADAAQAHALMESNQHVGKIVLTWTT " misc_feature 1110881..1111864 /locus_tag="Alide_1043" /note="putative NAD(P)H quinone oxidoreductase, PIG3 family; Region: quinone_pig3; TIGR02824" /db_xref="CDD:163034" misc_feature 1110881..1111858 /locus_tag="Alide_1043" /note="PIG3 p53-inducible quinone oxidoreductase; Region: p53_inducible_oxidoreductase; cd05276" /db_xref="CDD:176180" misc_feature order(1110998..1111003,1111253..1111255,1111265..1111267, 1111274..1111276,1111328..1111330,1111337..1111345, 1111400..1111405,1111415..1111417,1111460..1111462, 1111532..1111537,1111598..1111603,1111607..1111609, 1111673..1111681,1111823..1111825,1111838..1111840) /locus_tag="Alide_1043" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176180" gene 1111861..1112664 /locus_tag="Alide_1044" /db_xref="GeneID:10103077" CDS 1111861..1112664 /locus_tag="Alide_1044" /EC_number="5.3.1.1" /inference="protein motif:TFAM:TIGR00419" /note="TIGRFAM: triosephosphate isomerase; KEGG: dia:Dtpsy_0870 triosephosphate isomerase; PFAM: triosephosphate isomerase" /codon_start=1 /transl_table=11 /product="triosephosphate isomerase" /protein_id="YP_004125697.1" /db_xref="GI:319761760" /db_xref="GO:0004807" /db_xref="InterPro:IPR000652" /db_xref="InterPro:IPR020861" /db_xref="GeneID:10103077" /translation="MDDMTQKKKLIAGNWKMNGSLQANAALLQALRDGLGEAACAVAV AVPAPYLAQVQGLVAGSAIALAAQDVSQHESGAFTGEVSAAMLRDFGTRYVLVGHSER RQYHGETDAVVAAKAQRALAAGITPIVCVGETLAEREAGQTEAVVKRQLAAVVQSNGQ CISEIVVAYEPVWAIGTGRTATPEQAQQVHAVLRAQLAAATERADRVSLLYGGSMNAA NAAQLLAQPDIDGGLVGGASLKAADFLQIIAAAHAIQAQAATELGAEKA" misc_feature 1111885..1112595 /locus_tag="Alide_1044" /note="Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311" /db_xref="CDD:73362" misc_feature order(1111900..1111902,1111906..1111908,1112155..1112157, 1112368..1112370,1112386..1112388,1112500..1112502, 1112557..1112559,1112563..1112568) /locus_tag="Alide_1044" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73362" misc_feature order(1111900..1111902,1111909..1111911,1112002..1112010, 1112014..1112016,1112023..1112025,1112062..1112064, 1112116..1112118,1112125..1112130,1112161..1112166) /locus_tag="Alide_1044" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73362" misc_feature order(1111906..1111908,1112155..1112157,1112368..1112370) /locus_tag="Alide_1044" /note="catalytic triad [active]" /db_xref="CDD:73362" gene 1112661..1113026 /locus_tag="Alide_1045" /db_xref="GeneID:10103078" CDS 1112661..1113026 /locus_tag="Alide_1045" /inference="protein motif:TFAM:TIGR00810" /note="KEGG: dia:Dtpsy_0871 preprotein translocase, SecG subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit" /codon_start=1 /transl_table=11 /product="preprotein translocase, secg subunit" /protein_id="YP_004125698.1" /db_xref="GI:319761761" /db_xref="GO:0015450" /db_xref="InterPro:IPR004692" /db_xref="GeneID:10103078" /translation="MNAVVNVILAIQMLAALGMIGLILIQHGKGADMGAAFGSGSSGS LFGASGSANFLSRTTAVLATIFFVATLALAYFGNQRPASSGSVLETPAAAVPAAGAST AVPAPAAEPASGAAQIPTK" misc_feature 1112676..1112894 /locus_tag="Alide_1045" /note="Preprotein translocase SecG subunit; Region: SecG; cl09123" /db_xref="CDD:195798" gene 1113156..1113240 /locus_tag="Alide_R0011" /note="tRNA-Leu1" /db_xref="GeneID:10103079" tRNA 1113156..1113240 /locus_tag="Alide_R0011" /product="tRNA-Leu" /db_xref="GeneID:10103079" gene 1113285..1113674 /locus_tag="Alide_1046" /db_xref="GeneID:10103080" CDS 1113285..1113674 /locus_tag="Alide_1046" /inference="protein motif:PFAM:PF00507" /note="PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: ajs:Ajs_0957 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone/plastoquinone oxidoreductase chain 3" /protein_id="YP_004125699.1" /db_xref="GI:319761762" /db_xref="GO:0008137" /db_xref="InterPro:IPR000440" /db_xref="GeneID:10103080" /translation="MVSSDEYILQMNLDQYLPVLLFILVGIGVGVVPLLLGYVLGPNR PDPAKNSPYECGFEAFDDARMKFDVRYYLVAILFILFDLEIAFLFPWAVALQDVGATG FVAVVIFLSILVIGFAYEWKKGALDWE" misc_feature <1113411..1113671 /locus_tag="Alide_1046" /note="NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; Region: Oxidored_q4; cl00535" /db_xref="CDD:186065" gene 1113711..1114190 /locus_tag="Alide_1047" /db_xref="GeneID:10103081" CDS 1113711..1114190 /locus_tag="Alide_1047" /EC_number="1.6.99.5" /inference="protein motif:TFAM:TIGR01957" /note="TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: dia:Dtpsy_0873 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase, b subunit" /protein_id="YP_004125700.1" /db_xref="GI:319761763" /db_xref="GO:0008137" /db_xref="GO:0048038" /db_xref="InterPro:IPR006137" /db_xref="InterPro:IPR006138" /db_xref="GeneID:10103081" /translation="MIEGVMKEGFVTTSYDAVVNWAKTGSLWPVTFGLACCAVEMMHA AAARYDLARFGAEVFRASPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSC ANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALIYGIIQLQQKIRRTHTIARV" misc_feature 1113711..1114166 /locus_tag="Alide_1047" /note="NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; cl00419" /db_xref="CDD:193811" gene 1114200..1114808 /locus_tag="Alide_1048" /db_xref="GeneID:10103082" CDS 1114200..1114808 /locus_tag="Alide_1048" /inference="protein motif:TFAM:TIGR01961" /note="KEGG: aav:Aave_1265 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit" /codon_start=1 /transl_table=11 /product="NADH (or f420h2) dehydrogenase, subunit c" /protein_id="YP_004125701.1" /db_xref="GI:319761764" /db_xref="GO:0048038" /db_xref="InterPro:IPR001268" /db_xref="InterPro:IPR010218" /db_xref="InterPro:IPR020396" /db_xref="GeneID:10103082" /translation="MTDIAIHPEKLRDAVAGALGDKLREIRLALGEVTVVVAAEDYLA AMEILRDAPQCRFEQLIDLCGVDYSTYGEVGTDGPRYAVVTHLLSLSLNQRLRVKVFC PDDDFPVIPSVTGIWNGANWFEREAFDLYGIVFDGHNDLRRILTDYGFIGHPFRKDFP LSGHVEMRYDAEQRRVVYEPVTIEPREITPRIIREDNYGGLH" misc_feature 1114224..1114799 /locus_tag="Alide_1048" /note="Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Region: Complex1_30kDa; cl00539" /db_xref="CDD:193860" gene 1114836..1116089 /locus_tag="Alide_1049" /db_xref="GeneID:10103083" CDS 1114836..1116089 /locus_tag="Alide_1049" /EC_number="1.6.99.5" /inference="protein motif:TFAM:TIGR01962" /note="TIGRFAM: NADH dehydrogenase I, D subunit; KEGG: dia:Dtpsy_0875 NADH dehydrogenase subunit D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase i, d subunit" /protein_id="YP_004125702.1" /db_xref="GI:319761765" /db_xref="GO:0048038" /db_xref="InterPro:IPR001135" /db_xref="InterPro:IPR010219" /db_xref="InterPro:IPR014029" /db_xref="GeneID:10103083" /translation="MAEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHVGLLH RATEKLAEYKTYIQSLPYMDRLDYVSMMCNEQAYCLAIEKMLGVEVPLRAKYIRTMFG EITRLLNHLMWLGSNGMDLGASTVLMYTFRERETLFDMYEAVSGARMHAAYFRPGGVY RDLPDTMAQLKPSKVRNAKALEEFNRNRQGGLLDFIDDFCAKFPGYVDEYETLLTDNR IWKQRTVGIGVVSAERALNLSMSGVMLRGSGVAWDLRKKQPYDAYDRVEFDIPVGKNG DCYDRYLVRVEEMRQSNRIIKQCVDWLRANPGPVIVDNYKIAPPPRERMKTGMEDLIH HFKLFSEGFRVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLAAYDEL TRGHMIADAVAVIGTMDIVFGEIDR" misc_feature 1114836..1116086 /locus_tag="Alide_1049" /note="Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Region: Complex1_49kDa; cl00417" /db_xref="CDD:193809" gene 1116086..1116577 /locus_tag="Alide_1050" /db_xref="GeneID:10103084" CDS 1116086..1116577 /locus_tag="Alide_1050" /inference="protein motif:TFAM:TIGR01958" /note="KEGG: dia:Dtpsy_0876 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase, e subunit" /protein_id="YP_004125703.1" /db_xref="GI:319761766" /db_xref="GO:0016491" /db_xref="GO:0051287" /db_xref="InterPro:IPR002023" /db_xref="GeneID:10103084" /translation="MITEATKERFAREVAKYPPEQKQSAVMACLSIVQQEQGWISQES EAAIAEYLGMPQIAVHEVTTFYNMYNQQPVGKYKLAVCTNLPCQLRGGNQALHHLEAK LGITMGETTQDGLFTLQQCECLGACADAPTMLVNDRHMCSFMENDKLDQLVDGLRAAE GKQ" misc_feature 1116116..1116556 /locus_tag="Alide_1050" /note="NADH-quinone oxidoreductase, E subunit; Region: nuoE_fam; TIGR01958" /db_xref="CDD:131013" misc_feature 1116311..1116553 /locus_tag="Alide_1050" /note="TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of...; Region: TRX_Fd_NuoE; cd03064" /db_xref="CDD:48613" misc_feature order(1116317..1116319,1116323..1116325,1116443..1116451) /locus_tag="Alide_1050" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48613" misc_feature order(1116329..1116331,1116344..1116346,1116452..1116454, 1116464..1116466) /locus_tag="Alide_1050" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48613" gene 1116574..1117923 /locus_tag="Alide_1051" /db_xref="GeneID:10103085" CDS 1116574..1117923 /locus_tag="Alide_1051" /EC_number="1.6.99.5" /inference="protein motif:TFAM:TIGR01959" /note="TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: dia:Dtpsy_0877 NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase, f subunit" /protein_id="YP_004125704.1" /db_xref="GI:319761767" /db_xref="GO:0010181" /db_xref="GO:0051287" /db_xref="InterPro:IPR001949" /db_xref="InterPro:IPR011537" /db_xref="InterPro:IPR011538" /db_xref="InterPro:IPR019554" /db_xref="InterPro:IPR019575" /db_xref="GeneID:10103085" /translation="MTTAAQVLSQFQATGVQTCFHDRHINPQIYAGLNGSNWSIKDYE ARGGYAALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFPTGLKWSFMPRQFPRQ KHLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISLGYNYIHGEIFQVYER FEAALEEARAAGYLGSNIMDSDFSFQLHAHHGFGAYICGEETALLESLEGKKGQPRFK PPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIFSVSGDVER PGNYEIPLGTPFAKLLELAGGVRKGRQLKAVIPGGSSAPVLPASIMMECTMDYDSIAK AGSMLGSGAVIVMDDSRDMVESLMRLSYFYMHESCGQCTPCREGTGWLWRVVHRIQHG QGRVEDIEVLDSVAFNIMGRTICALGDAAAMPVRAMIKHFRHEFVAKIEAAAKASAA" misc_feature 1116685..1117884 /locus_tag="Alide_1051" /note="NADH-quinone oxidoreductase, F subunit; Region: nuoF_fam; TIGR01959" /db_xref="CDD:131014" misc_feature 1116790..1117308 /locus_tag="Alide_1051" /note="Respiratory-chain NADH dehydrogenase 51 Kd subunit; Region: Complex1_51K; pfam01512" /db_xref="CDD:144926" misc_feature 1117372..1117524 /locus_tag="Alide_1051" /note="SLBB domain; Region: SLBB; pfam10531" /db_xref="CDD:192616" misc_feature 1117633..1117770 /locus_tag="Alide_1051" /note="NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; pfam10589" /db_xref="CDD:192637" gene 1117939..1120059 /locus_tag="Alide_1052" /db_xref="GeneID:10103086" CDS 1117939..1120059 /locus_tag="Alide_1052" /inference="protein motif:TFAM:TIGR01973" /note="KEGG: aav:Aave_1269 NADH dehydrogenase subunit G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase, chain g" /protein_id="YP_004125705.1" /db_xref="GI:319761768" /db_xref="GO:0051287" /db_xref="GO:0051536" /db_xref="InterPro:IPR000283" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR010228" /db_xref="InterPro:IPR019574" /db_xref="GeneID:10103086" /translation="MVEIELDGQKVEVAEGSMVMHAAEKANVYIPHFCYHKKLSIAAN CRMCLVDVEKAPKPMPACATPVTQGMIVRTKSDKALKAQQSVMEFLLINHPLDCPICD QGGECQLQDLAVGYGASASRYGEEKRVVLRKDIGPLISTEEMTRCIHCTRCVRFGQEI GGDMELGMVNRGEHSEITTVKGDTVDSELSGNMIDICPVGALTSRPFRYSARTWELSR RKSISPHDSTGANLIVQVKNHRVMRVVPLENEAVNECWIADRDRFSYEALNGEDRLTR PMLKQGGQWQEVDWQTALEYVANGLKCVRDKHGASAIGALVSPHSTLEELYLAGALVR GLGSDNIDHRLRHAEFAAPEGVRWLGMPIAALSGLQSVLVLGSNLRKDHPLFAQRIRQ AARKGCTVHAINAQAYDWALPATHSVVSHADWAQALADVAAAVAQEKGVAAPAQGQAS EEAVAIARALLSGDSKAILLGNAAAHHTQASILLALAQWIAGQTGAAFGYLTEAANTV GAQFVGAQPRQGGLNAAQMLEGQVKALFLLNTEPAFDSVAGAKVAQGLADVDMVVTLS PFKTNMEFSDVLLPIAPFTETSGSFVNAEGRVQSFHAVVRPLGETRPAWKVLRVLANI MGLEGVDFNSSQDVLTHVVGSATQLGAEQLSNATGAAITVARGPAAAPVVASIYQLDG LVRRAPALQQTADARRAREEGAAA" misc_feature 1117939..1120017 /locus_tag="Alide_1052" /note="NADH dehydrogenase subunit G; Validated; Region: PRK09129" /db_xref="CDD:181664" misc_feature 1117942..1118157 /locus_tag="Alide_1052" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(1118026..1118031,1118038..1118040,1118047..1118049, 1118071..1118082,1118119..1118124) /locus_tag="Alide_1052" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(1118038..1118040,1118071..1118073,1118080..1118082, 1118122..1118124) /locus_tag="Alide_1052" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature 1118185..1118307 /locus_tag="Alide_1052" /note="NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588" /db_xref="CDD:192636" misc_feature 1118596..1119813 /locus_tag="Alide_1052" /note="MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions...; Region: MopB_NDH-1_NuoG2; cd02772" /db_xref="CDD:29468" gene 1120056..1121132 /locus_tag="Alide_1053" /db_xref="GeneID:10103087" CDS 1120056..1121132 /locus_tag="Alide_1053" /inference="protein motif:PFAM:PF00146" /note="PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dia:Dtpsy_0879 NADH dehydrogenase (quinone)" /codon_start=1 /transl_table=11 /product="respiratory-chain NADH dehydrogenase subunit 1" /protein_id="YP_004125706.1" /db_xref="GI:319761769" /db_xref="InterPro:IPR001694" /db_xref="InterPro:IPR018086" /db_xref="GeneID:10103087" /translation="MIDAIYNGGLNLVAASWWTGLAWPVIWNLIKIVCVLAPLMGAVA YLTLWERKLLGFMQVRLGPNRVGPLGLLQPLADGLKLLTKEVIQPTAASKGLFILGPI MAIMPALAAWVVVPFAPETALANINAGLLLVMAIASIEVYGVIIAGWASNSKYALLGA LRASAQMVSYEIAMGFCFVVVIMVTGSMNLTDIVLGQARGAMAGMGLNFLSWNWLPLL PVFLVYLISGVAETNRHPFDVVEGEAEIVAGHMVEYSGMGFAIFFLAEYAAMWLVSIL AVLMFLGGWLPPVEALGFIPGWIWLGIKTFVVVSMFIWIRATFPRYRYDQIMRLGWKI FIPVTLVWLLVVGAWLLSPWNIWK" misc_feature 1120125..1121066 /locus_tag="Alide_1053" /note="NADH dehydrogenase; Region: NADHdh; cl00469" /db_xref="CDD:186018" gene 1121149..1121661 /locus_tag="Alide_1054" /db_xref="GeneID:10103088" CDS 1121149..1121661 /locus_tag="Alide_1054" /EC_number="1.6.99.3" /inference="protein motif:TFAM:TIGR01971" /note="KEGG: dia:Dtpsy_0880 NADH dehydrogenase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase, chain i" /protein_id="YP_004125707.1" /db_xref="GI:319761770" /db_xref="GO:0051536" /db_xref="InterPro:IPR010226" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="GeneID:10103088" /translation="MAAVAAPASFSIKDFFKSFMLWELAKGMVLTGRYAFRGKVTVQF PEEKTPLSPRFRGLHALRRYDNGEERCIACKLCEAVCPAMAITIESDVRSDGTRRTTR YDIDLTKCIFCGFCEESCPVDSIVETQILEYHGEKRGDLYFTKEMLLAVGDRYEPEIA AAKAADAKYR" misc_feature 1121182..1121658 /locus_tag="Alide_1054" /note="NADH dehydrogenase subunit I; Provisional; Region: PRK05888" /db_xref="CDD:180305" misc_feature 1121455..1121523 /locus_tag="Alide_1054" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene 1121703..1122371 /locus_tag="Alide_1055" /db_xref="GeneID:10103089" CDS 1121703..1122371 /locus_tag="Alide_1055" /inference="protein motif:PFAM:PF00499" /note="PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: dia:Dtpsy_0881 NADH-ubiquinone/plastoquinone oxidoreductase chain 6" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone/plastoquinone oxidoreductase chain 6" /protein_id="YP_004125708.1" /db_xref="GI:319761771" /db_xref="GO:0008137" /db_xref="InterPro:IPR001457" /db_xref="GeneID:10103089" /translation="MDVKTGFFYLFSVVLLYAAFRVITARNPVHAVLHLILAFSQAAG VWLLLKAEFLAITLVLVYLGAVMVLFLFVVMMLDIRFDTVRRGFWKHFPLAAFIGALV AFEMAAVLMTGFRGVEEPKAVPALVNAAGQVLPYSNTQALGRLMYTEYLYPVEIAAVI LLVAMISAIALTLRQRKDVKAGDATAQLRARASDRLVVLKMPTTQAPQPPADDDAGAQ EKKA" misc_feature 1121703..1122308 /locus_tag="Alide_1055" /note="NADH:ubiquinone oxidoreductase subunit J; Provisional; Region: PRK06638" /db_xref="CDD:180642" misc_feature 1121703..>1121897 /locus_tag="Alide_1055" /note="NADH dehydrogenase subunit J; Provisional; Region: PRK06433; cl14634" /db_xref="CDD:187397" misc_feature <1122111..1122221 /locus_tag="Alide_1055" /note="NADH dehydrogenase subunit J; Provisional; Region: PRK06433; cl14634" /db_xref="CDD:187397" gene 1122368..1122676 /locus_tag="Alide_1056" /db_xref="GeneID:10103090" CDS 1122368..1122676 /locus_tag="Alide_1056" /inference="protein motif:PFAM:PF00420" /note="PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dia:Dtpsy_0882 NADH-ubiquinone oxidoreductase chain 4L" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone oxidoreductase chain 4l" /protein_id="YP_004125709.1" /db_xref="GI:319761772" /db_xref="GO:0008137" /db_xref="InterPro:IPR001133" /db_xref="GeneID:10103090" /translation="MTLTLGHFLSLGAMLFALAVVGIFLNRKNLIVLLMAIELMLLAV NINFVAFSYYLGDMHGQVFVFFILTVAAAEAAIGLAILVLLFRNKTSINAEDLNTLKG " sig_peptide 1122368..1122427 /locus_tag="Alide_1056" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.852) with cleavage site probability 0.814 at residue 20" misc_feature 1122371..1122673 /locus_tag="Alide_1056" /note="NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; Region: Oxidored_q2; cl00492" /db_xref="CDD:186032" gene 1122733..1124742 /locus_tag="Alide_1057" /db_xref="GeneID:10103091" CDS 1122733..1124742 /locus_tag="Alide_1057" /inference="protein motif:TFAM:TIGR01974" /note="KEGG: dia:Dtpsy_0883 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein" /codon_start=1 /transl_table=11 /product="proton-translocating NADH-quinone oxidoreductase, chain l" /protein_id="YP_004125710.1" /db_xref="GI:319761773" /db_xref="GO:0008137" /db_xref="InterPro:IPR001516" /db_xref="InterPro:IPR001750" /db_xref="InterPro:IPR003916" /db_xref="InterPro:IPR003945" /db_xref="InterPro:IPR018393" /db_xref="GeneID:10103091" /translation="MLLAVPLAPLAGSALAGIFGTAFGGNWLGRRASHSLTILGVLVS FVLSALTLSSVVLDGARFNETIYTWMVVGGLRMEVGFLIDSLTAMMMCVVTFVSLMVH IYTIGYMEEDDGYNRFFSYISLFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWF NKQSAIFANLKAFLVNRVGDFGFILGIGLIAAYAGSFNYGEIFAKRQELGGLLLPGTD WQLITVACICLFIGAMGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVSRM SPLFEMSDTALNFVLVIGAITALFMGFLGIIQNDIKRVIAYSTLSQLGYMTVALGVSA YSVAVFHLMTHAFFKALLFLGAGSVIMGVHHNQDIRWMGGLRKYMPITWITSLLGSLA LIGTPLFSGFYSKENIIEAARFSQLPAAGFAHFAVLAGVFVTAFYSFRMYFLVFHGKE RYDQNPDTHHDEHDEPDPHHHHADHSKPHESPWVVTVPLVLLAIPSVVIGFMYIQPML FGDFFKDVIFVDAARHGAMAELAHEFHGPVAMAVHALQTAPFWLALAGVALSYYMYIV NPALPAAIKRGLQPIYALLENKYYMDWINENIIAAGTRCLGVALWKGGDQGVIDGAIV NGSWKLVARISAVVRRVQSGFLYHYALFMILGVFALMTYFVWLNK" misc_feature 1122796..1124736 /locus_tag="Alide_1057" /note="NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590" /db_xref="CDD:180633" misc_feature 1122925..1123104 /locus_tag="Alide_1057" /note="NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662" /db_xref="CDD:109709" misc_feature 1123156..1123968 /locus_tag="Alide_1057" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" gene 1124756..1126231 /locus_tag="Alide_1058" /db_xref="GeneID:10103092" CDS 1124756..1126231 /locus_tag="Alide_1058" /inference="protein motif:TFAM:TIGR01972" /note="KEGG: dia:Dtpsy_0884 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)" /codon_start=1 /transl_table=11 /product="proton-translocating NADH-quinone oxidoreductase, chain m" /protein_id="YP_004125711.1" /db_xref="GI:319761774" /db_xref="GO:0008137" /db_xref="InterPro:IPR001750" /db_xref="InterPro:IPR003918" /db_xref="InterPro:IPR010227" /db_xref="GeneID:10103092" /translation="MGLLSLAIWTPIVFGVLLLAFGSDRHAGAVRWLALIGALLGLAV TIPLIGGFDTGTAAMQFVEKAPWVARFNMYYHLGVDGISMWFVPLTAFITVIVVIASW ESITERVYQYMAAFLILSGLMIGVFSALDGMLFYVFFEATLIPMYLIIGMWGGPNKIY AAFKFFLYTLLGSLLTLVAFIYLYNQSGGSFDIAAWHRLPLGSTAQTLLFFALFAAFA VKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPIAPDAAHEWAWLM ITLSLIAVIYVGLVAIVQKDMKKLVAYSSVAHMGFVTLGFFIFNDLGVSGGLAQMIAH GFVSGAMFLCIGVLYDRVHSRQIADYGGVVNTMPKFAAFALLFSMANCGLPATAGFIG EWMVIIASVRFNFWIGLGAALALILGASYSLWMYKRVYLGPVVNDNVRGMSDINAREF LVLGVLAIAVLYMGIYPKPFTDVMDASVTELLRHVAQSKLN" misc_feature 1124762..1126222 /locus_tag="Alide_1058" /note="NADH:ubiquinone oxidoreductase subunit M; Reviewed; Region: PRK05846" /db_xref="CDD:180285" misc_feature 1125140..1125955 /locus_tag="Alide_1058" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" gene 1126253..1127749 /locus_tag="Alide_1059" /db_xref="GeneID:10103093" CDS 1126253..1127749 /locus_tag="Alide_1059" /inference="protein motif:TFAM:TIGR01770" /note="KEGG: dia:Dtpsy_0885 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I)" /codon_start=1 /transl_table=11 /product="proton-translocating NADH-quinone oxidoreductase, chain n" /protein_id="YP_004125712.1" /db_xref="GI:319761775" /db_xref="GO:0008137" /db_xref="InterPro:IPR001750" /db_xref="InterPro:IPR010096" /db_xref="GeneID:10103093" /translation="MMIDNISWLAIYPEIVLLVMACVIALVDLGVSSARRTGTYVLTM LTLAVVAILQAMYASSGNTFYGWSNMVVSDAMGNWLKCFATVSLMVTLVYGRPYAADR DMLRGGELFTLTMLALLGICVLISANNFLVIYLGLELLTLSSYALVALRRDHTTTTEA AMKYFVLGAMASGFLLYGLSMVYGATGSLDIGQVFKAINTGQIRHQVLVFGVVFIVAG LAFKFGAVPFHMWIPDVYQGAPTVVTLIIGSAPKFAAFGMAIRLLVDGLLPLAIDWQQ MLAVLAIASLLVGNVAGVLQTNLKRMLAYSTISHMGFLFLGLLSGVVNGTVDSNAAEA AYSSAMFYIVTYVLTVLPAFGLIAMLAREGFESEEIADLAGLNQRSPLYAGVMAVCMF SLAGIPPLVGFYAKLSVLQALVASGHGLHVALAVFAVLMSLIGAFYYLRVVKVMYFDT PLTATTVSAPLDARVVLTVNGALVLILGLVPGGLMALCADAIVRALAT" misc_feature 1126253..1127728 /locus_tag="Alide_1059" /note="NADH:ubiquinone oxidoreductase subunit N; Provisional; Region: PRK05777" /db_xref="CDD:180252" misc_feature 1126631..1127491 /locus_tag="Alide_1059" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" gene 1127769..1128086 /locus_tag="Alide_1060" /db_xref="GeneID:10103094" CDS 1127769..1128086 /locus_tag="Alide_1060" /inference="similar to AA sequence:KEGG:Dtpsy_0886" /note="KEGG: dia:Dtpsy_0886 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004125713.1" /db_xref="GI:319761776" /db_xref="InterPro:IPR016768" /db_xref="GeneID:10103094" /translation="MTQTAAIWLVIVAALVAANLPFVNDRWLIVGKQAPGGKPFLARA LELLLLYFAVGALARLIEQRAGQAAPQGWEFYAVTAALFITLAFPGFVYRYLMRRGGR RGH" sig_peptide 1127769..1127822 /locus_tag="Alide_1060" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.824) with cleavage site probability 0.457 at residue 18" misc_feature 1127823..1128059 /locus_tag="Alide_1060" /note="Protein of unknown function (DUF2818); Region: DUF2818; pfam10993" /db_xref="CDD:151440" gene 1128097..1128561 /locus_tag="Alide_1061" /db_xref="GeneID:10103095" CDS 1128097..1128561 /locus_tag="Alide_1061" /inference="protein motif:PFAM:PF06676" /note="KEGG: dia:Dtpsy_0887 protein of unknown function DUF1178; manually curated; PFAM: protein of unknown function DUF1178" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125714.1" /db_xref="GI:319761777" /db_xref="InterPro:IPR009562" /db_xref="GeneID:10103095" /translation="MKVLDLFCVHQHVFEGWFASEEDFQQQQSRGLVQCPMCGSTDIR KGLSAPRLNLRASPDAPAPAQVAARPAPASREDALQALQTVWLHAARQIMARTEDVGG RFAAEARRMHYGEIEERAIRGQATPQETAELLDEGIVVLPLPIPEAAKETLQ" misc_feature 1128097..1128549 /locus_tag="Alide_1061" /note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS; cl00993" /db_xref="CDD:197419" gene complement(1128568..1128936) /locus_tag="Alide_1062" /db_xref="GeneID:10103096" CDS complement(1128568..1128936) /locus_tag="Alide_1062" /inference="similar to AA sequence:KEGG:Ajs_0974" /note="KEGG: ajs:Ajs_0974 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125715.1" /db_xref="GI:319761778" /db_xref="GeneID:10103096" /translation="MGLHFLSFDYSEDSEGTATWDAVASVPTARLPELQREIVALLAW AHSEFGAVRGPVEDGGLWDYDLQFERDRHPLQALGYDVDARQLQPAPHALPGERVTLT LSLSGGLSFGEAFAARFGDP" gene complement(1128980..1130398) /locus_tag="Alide_1063" /db_xref="GeneID:10103097" CDS complement(1128980..1130398) /locus_tag="Alide_1063" /EC_number="1.4.1.4" /inference="protein motif:PRIAM:1.4.1.4" /note="KEGG: ajs:Ajs_0977 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region" /codon_start=1 /transl_table=11 /product="glutamate dehydrogenase (nadp(+))" /protein_id="YP_004125716.1" /db_xref="GI:319761779" /db_xref="InterPro:IPR006095" /db_xref="InterPro:IPR006096" /db_xref="InterPro:IPR006097" /db_xref="InterPro:IPR014362" /db_xref="GeneID:10103097" /translation="MHEDIRFWHNLLLHCHITFSIESFFMKYASVGQFLEYVAQRNPG QPEFLQAVTEVMESLWPFIEKHPKYAENSLLERLVEPERIIQFRVSWQDDHGTVHVNR GFRIQHSMAIGPYKGGLRFHPSVNLSVLKFLAFEQTFKNALTTLPMGGGKGGSDFDPK GKSPSEVMRFCQAFVTELFRHVGPDTDVPAGDIGVGGREVGFMAGMYKKLANNSGSVF TGKGLSFGGSLIRPEATGYGCVYFAQEMLKTRGRSFDGLRVSVSGSGNVAQYSVEKAM ELGAKVITVSDSSGTIIDEEGFTPEKLAILMDVKNHHYGRVSDYAERTGVKFQAGMRP WHVPVDVALPSATQNELDENDARTLIKNGVLCVAEGANMPSTIEAAKAFEEAGVLYAP GKASNAGGVATSGLEMSQNAIRLSWSRDEVDARLLMIMQGIHAACVEYGKRADGSVSY INGANVAGFVKVADAMLAQGVI" misc_feature complement(1128983..1130323) /locus_tag="Alide_1063" /note="glutamate dehydrogenase; Provisional; Region: PRK09414" /db_xref="CDD:181834" misc_feature complement(1129766..1130158) /locus_tag="Alide_1063" /note="Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Region: ELFV_dehydrog_N; pfam02812" /db_xref="CDD:190436" misc_feature complement(1128986..1129744) /locus_tag="Alide_1063" /note="NAD(P) binding domain of glutamate dehydrogenase, subgroup 2; Region: NAD_bind_2_Glu_DH; cd05313" /db_xref="CDD:133455" misc_feature complement(order(1129283..1129291,1129358..1129363, 1129535..1129540,1129598..1129606)) /locus_tag="Alide_1063" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133455" gene complement(1130631..1132607) /locus_tag="Alide_1064" /db_xref="GeneID:10103098" CDS complement(1130631..1132607) /locus_tag="Alide_1064" /inference="protein motif:TFAM:TIGR00585" /note="KEGG: ajs:Ajs_0978 DNA mismatch repair protein MutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein mutl" /protein_id="YP_004125717.1" /db_xref="GI:319761780" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR013507" /db_xref="InterPro:IPR014762" /db_xref="InterPro:IPR014763" /db_xref="InterPro:IPR014790" /db_xref="InterPro:IPR020667" /db_xref="GeneID:10103098" /translation="MGGTYNRRVTAPPPDSATPSVPAPRRPIRDLPDELISQIAAGEV VERPASAVRELVDNALDAGATQVTVRLLAGGVRLIAVEDDGMGIPRDELPIALRRHAT SKIGNLHDLESVATMGFRGEALAAIASVSEMALLSRTAQQASAFMLDARSGELRPAAR SQGTTVEVKELFFSTPARRKFLKTDATELAHCVEAVRRHALARPDVGFAIWHEGKLVE QWRATLAHGEPADAQALERRLADVLGEDFIRESVPVHLRSGAITVTGRAGLPDAARSR ADQQFCYVNGRFVRDKVLTHAARSAYEDVLHGQKQPVYALYVQMDPQRVDVNVHPTKI EVRFRDSREVHQAVRHAVENALAAPRAQALASVPVAAAAAPASDSGRKQFQLPIWQAQ AAIRFEERAGHKVSDLQALWGTPAAAPQPAMPAAATPPAAIEAPPLPAAAAAAAAAAA AAAASVPAAPTESAWPLGRAVAQIHGVYILAESAQGLVVVDMHAAHERIVYERLKAQV DQGARLASQPLLIPATFAATPEEVATAESHADTLALLGLEIVPFSPRTLAVRAVPNTL AQGNPVELARSVLAELGQHDASTVVQRARNEILATMACHGAVRANRKLTIDEMNALLR QMEVTERSDQCNHGRPTWRQLTVKELDALFLRGR" misc_feature complement(1131597..1132529) /locus_tag="Alide_1064" /note="DNA mismatch repair protein MutL; Region: mutl; TIGR00585" /db_xref="CDD:161941" misc_feature complement(<1132209..1132466) /locus_tag="Alide_1064" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1132236..1132247,1132344..1132349, 1132353..1132355,1132359..1132361,1132365..1132367, 1132425..1132427,1132434..1132436,1132446..1132448)) /locus_tag="Alide_1064" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1132434..1132436) /locus_tag="Alide_1064" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1132239..1132241,1132245..1132247, 1132347..1132349,1132353..1132355)) /locus_tag="Alide_1064" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(1131546..1131905) /locus_tag="Alide_1064" /note="MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second...; Region: MutL_Trans_MutL; cd03482" /db_xref="CDD:48470" misc_feature complement(1131609..1131611) /locus_tag="Alide_1064" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48470" misc_feature complement(1130766..1131212) /locus_tag="Alide_1064" /note="MutL C terminal dimerisation domain; Region: MutL_C; cl07336" /db_xref="CDD:195534" gene complement(1132615..1132869) /locus_tag="Alide_1065" /db_xref="GeneID:10103099" CDS complement(1132615..1132869) /locus_tag="Alide_1065" /inference="similar to AA sequence:KEGG:Dtpsy_0894" /note="KEGG: dia:Dtpsy_0894 17 kDa surface antigen" /codon_start=1 /transl_table=11 /product="17 kda surface antigen" /protein_id="YP_004125718.1" /db_xref="GI:319761781" /db_xref="GeneID:10103099" /translation="MTPQRTPTLRALTVATALAGALALGGCAHRPTNAQVGTGVGAVA GGLVGNAVFGSTLGTVGGAAAGALIGNEVGKNNDRGYRRR" sig_peptide complement(1132765..1132869) /locus_tag="Alide_1065" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.833 at residue 35" gene 1133095..1133742 /locus_tag="Alide_1066" /db_xref="GeneID:10103100" CDS 1133095..1133742 /locus_tag="Alide_1066" /inference="protein motif:PFAM:PF09335" /note="PFAM: SNARE associated Golgi protein; KEGG: dia:Dtpsy_1467 SNARE associated Golgi protein" /codon_start=1 /transl_table=11 /product="snare associated golgi protein-like protein" /protein_id="YP_004125719.1" /db_xref="GI:319761782" /db_xref="InterPro:IPR015414" /db_xref="GeneID:10103100" /translation="MDIIAFLIDFILHVDKHLEAFVASYGAWVYALLFIIVFVETGVV VMPFLPGDSLLFIVGALCGAGLLNFPLACALLLAAAVLGDQCNYQIGRYFGPKVFQWE GSRWFNKKAFDQAHAFYERYGGITIVLARFMPFIRTFAPFVAGVAAMGRAKFTAYNVA GALIWVLGIATAGYFFGNLPWVRQHLEKIIWGLILVPGLIAIFGAWRAGRKQQAA" misc_feature 1133095..1133733 /locus_tag="Alide_1066" /note="SNARE associated Golgi protein; Region: SNARE_assoc; cl00429" /db_xref="CDD:193815" misc_feature 1133137..1133730 /locus_tag="Alide_1066" /note="Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586" /db_xref="CDD:30931" gene complement(1133746..1135026) /locus_tag="Alide_1067" /db_xref="GeneID:10103101" CDS complement(1133746..1135026) /locus_tag="Alide_1067" /inference="protein motif:TFAM:TIGR02967" /note="KEGG: vap:Vapar_3881 guanine deaminase; TIGRFAM: guanine deaminase; PFAM: amidohydrolase" /codon_start=1 /transl_table=11 /product="guanine deaminase" /protein_id="YP_004125720.1" /db_xref="GI:319761783" /db_xref="GO:0008270" /db_xref="GO:0008892" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR014311" /db_xref="GeneID:10103101" /translation="MTLQAYRAQLLRFDADGQPLYDSDGLLVTGPGADGVRRVVDAGA HGAVAAHHPGVPVERLPGRLIAPGFIDMHVHYPQTDIIGSPAEGLLPWLENYTFPAEA RFADPTHAAEVARFFFDELARNGVTTALAFATSHPASVDAFFSQARQRGLRMIGGKVL QDRHSPDGVRDQTEQSLLDTEALITRWHGKGRLGYAITPRFAPSCSDAQLRGAGELAR RHPGTWIQSHVAENKDEVRWVRELYPQARSYLDVYRRFGLLRSRAVYAHCIYLDDTDR ALMRETGTAAAVSPTSNLFLGSGFFDYGSAARTGMLHGLASDVGGGTSFCPFHTMLAA YYVGREGQSKPGLSLAPSQLWWRHTGGAARALGLDGVIGTLQPGTEADFVVLDPQATP LLARKTAQANGLEELLFALIVLGDDRVVERTVTA" misc_feature complement(1133749..1135026) /locus_tag="Alide_1067" /note="guanine deaminase; Provisional; Region: PRK09228" /db_xref="CDD:181711" misc_feature complement(1133758..1134846) /locus_tag="Alide_1067" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature complement(order(1134073..1134075,1134226..1134228, 1134343..1134345,1134802..1134804,1134808..1134810)) /locus_tag="Alide_1067" /note="active site" /db_xref="CDD:30035" gene complement(1135031..1136386) /locus_tag="Alide_1068" /db_xref="GeneID:10103102" CDS complement(1135031..1136386) /locus_tag="Alide_1068" /inference="protein motif:PFAM:PF00860" /note="PFAM: Xanthine/uracil/vitamin C permease; KEGG: dac:Daci_5908 xanthine/uracil/vitamin C permease" /codon_start=1 /transl_table=11 /product="xanthine/uracil/vitamin c permease" /protein_id="YP_004125721.1" /db_xref="GI:319761784" /db_xref="GO:0005215" /db_xref="InterPro:IPR006043" /db_xref="InterPro:IPR018134" /db_xref="GeneID:10103102" /translation="MNAKDLSGVPATPQQAASAGLAERLFKLREHGTTMRTELIAGLT TFLTMAYIIFVNPSILGDAGMPKDAVFVATCLIAALGSAIMGLYANYPIAMAPGMGLN AYFAYAVVLHMGFTWQAALGAVFISGCLFLVVTLFGLRGLIIKGIPQSLRNAITVGIG LFLALIALKSAGIVVGDKATLVTLGDLHSAPVILAVLGFIAIVALDKARVPGAILIGI VGVTVASFFFGGNQFRGLFSAPPSIAPTFLQLDIHTALTKGFLNVVLVFFLVELFDAT GTLMGVAKRAGLLVPGRMERLNKSLLADSSAIFAGALLGTSSTTAYVESAAGVQAGGR TGMTALTVSVLFLACLFIAPLAGVVPAYATAPALFFVACLMLRELTELDWDDSTEIVP AAVTALMMPFTYSIANGLAFGFITYAAVKLFTGRVREVHPMVWIIAGVFLFKFFYIGG H" misc_feature complement(1135040..1136329) /locus_tag="Alide_1068" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" misc_feature complement(1135166..1136281) /locus_tag="Alide_1068" /note="Permease family; Region: Xan_ur_permease; pfam00860" /db_xref="CDD:189745" gene complement(1136417..1137430) /locus_tag="Alide_1069" /db_xref="GeneID:10103103" CDS complement(1136417..1137430) /locus_tag="Alide_1069" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vap:Vapar_3905 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="regulatory protein lysr" /protein_id="YP_004125722.1" /db_xref="GI:319761785" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103103" /translation="MKPHAAPPHAPAGASAPAGAPSERNLFDRIDLHLIRVLHQVLTE RSVSRAALRLGMHQPAVSTALKRLRELAGDPLLVRNGAHMVPTEAGQRMLEPAANVLR AAEMLFTEARSFDARTSCQTFRIAASDYLDPLFLPRLVADIQRQAPLARVEIHALTRE GDYRAQLALGEIDLVIGNWLQPPDDLHMARLFSDEVVSLVSRHHPAVRRGWDEAGWLA AEHIAPMPTHPGARGIIDQMLDGLGLQRHIAVRSAYFSLIPDMVAGTRLVLTTGRRYC ERVASRLPLAILPCPIAMPPLLYYQLWHARSQHSSAARWLRERTREAIAGLQQQAAPP SPH" misc_feature complement(1136441..1137343) /locus_tag="Alide_1069" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1137158..1137337) /locus_tag="Alide_1069" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1136462..1137067) /locus_tag="Alide_1069" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(1136639..1136644,1136648..1136653, 1136669..1136686,1136963..1136983,1136987..1136989, 1136999..1137001,1137008..1137013,1137017..1137022)) /locus_tag="Alide_1069" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(1137427..1139856) /locus_tag="Alide_1070" /db_xref="GeneID:10103104" CDS complement(1137427..1139856) /locus_tag="Alide_1070" /inference="protein motif:TFAM:TIGR02965" /note="KEGG: vap:Vapar_3906 xanthine dehydrogenase, molybdopterin binding subunit; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase, molybdopterin binding subunit" /protein_id="YP_004125723.1" /db_xref="GI:319761786" /db_xref="GO:0004854" /db_xref="GO:0004855" /db_xref="GO:0030151" /db_xref="GO:0050660" /db_xref="InterPro:IPR000674" /db_xref="InterPro:IPR008274" /db_xref="InterPro:IPR014309" /db_xref="GeneID:10103104" /translation="MNKPVPGHVLNHPAAFAPYQDNQRLRLDPGAEARAHQAGARVGI SQAHESAVLHVSGSATYTDDIPELAGTLHCALGLAPVAAGRLLGMDLDTVRAMPGVVR VFTAADIPGANDWGSIVHDDPILCDGEIRYLGQPVFAVVARTREQARRAAALARQALR VEAAPPVLTPREAHARGQYVVPPMHLVRSSSGLDEAGIRARIAAAPHRLQGSLDVGGQ EQFYLEGQISYAIPKEGNAMHVHCSTQHPSEMQHLVAHALGVHAHAVQVECRRMGGGF GGKESQSALFACMASVAARLLARPVKLRVDRDDDFLITGRRHCFWYEYDVGYDDAGRI LGAAVTMVSRAGHSADLSAPVMTRALCHFDNAYWLPEVAMHGFCGKTNTQSNTAFRGF GGPQGAIAIEYILDGIARALGHDPLAVRRANFYGRGERNVTPYLQTVRDNVIHELVDQ LEERSGYQARRTAVAAFNATSPVLKRGLALTPVKFGISFNVKHFNQAGALVHVYTDGS ILVNHGGTEMGQGLNTKVAQVVAHELGVAFERVRVTATDTSKVANTSAPAASTGSDLN GKAAQDAARQIRARLAACAAARHGGSSEDVRFANDQVWAGGRQLSFDALVGEAYLDRV QLWSDGFYATPGLSWDKDRMQGNPFYYFAYGAACSEVVVDTLTGEWKLLRADVLHDVG RSLNPAVDIGQVEGAFIQGMGWLTMEELVWHPTSGLLLTHAPSTYKIPTANDCPPEFN VQLFEGENAEDSIHRSKAVGEPPLLLPFSVFFAIRDAVAAAGGHRVAPPLQAPATSEA ILRAITAVQAP" misc_feature complement(1137436..1139733) /locus_tag="Alide_1070" /note="xanthine dehydrogenase, molybdopterin binding subunit; Region: xanthine_xdhB; TIGR02965" /db_xref="CDD:163089" misc_feature complement(<1139446..1139691) /locus_tag="Alide_1070" /note="Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; pfam01315" /db_xref="CDD:144787" misc_feature complement(1137649..1139340) /locus_tag="Alide_1070" /note="Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738" /db_xref="CDD:145733" gene complement(1139866..1141425) /locus_tag="Alide_1071" /db_xref="GeneID:10103105" CDS complement(1139866..1141425) /locus_tag="Alide_1071" /inference="protein motif:TFAM:TIGR02963" /note="KEGG: dac:Daci_5910 xanthine dehydrogenase, small subunit; TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain-containing protein; CO dehydrogenase flavoprotein domain protein" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase, small subunit" /protein_id="YP_004125724.1" /db_xref="GI:319761787" /db_xref="GO:0004854" /db_xref="GO:0004855" /db_xref="GO:0050660" /db_xref="InterPro:IPR002346" /db_xref="InterPro:IPR002888" /db_xref="InterPro:IPR005107" /db_xref="InterPro:IPR006058" /db_xref="InterPro:IPR012175" /db_xref="InterPro:IPR014307" /db_xref="InterPro:IPR016166" /db_xref="GeneID:10103105" /translation="MTHATPSSADARPIRFYHRGAVVSIQGMHTTRTVLDWLREDVRC TGTKEGCNEGDCGACTVVLGELDANGQLQLASVNACIQFLPTLDGKALFTVEDLQAMT PAQSCCGGAAQPLHPVQQALVECHGSQCGFCTPGFAMSLWNTYEQHRQAGTRPTRQQL ADDLSGNLCRCTGYRPILDAGQRMFDLPAAAFDRAAVARALQALAQEPALAYGAAHHT VSERTDHFHAPRTLEDLARLRLEQPQARLLAGSTDIGLWVNKQFRDVGDLIYLGGVRE LRAVEERDGALWIGAGATLEQAWAALAARAPALTDVWLRFASTPIRHAGTMGGNVANG SPIGDSAPILMALDAQVELRRGAAVRRLPLPDFYLDYMKNALQEGEFVQAIVVPLAAF ARQVRGYKISKRFDCDISALCAGMAIALDGETVASVRLAYGGMAATVQRAARAESALL GQPWTEDSMRAAQQALAQDFQPLTDMRASSAYRLQVAQNLLQRLWLETRPQGPLDAGR TSVFSVLPHGV" misc_feature complement(1139932..1141386) /locus_tag="Alide_1071" /note="xanthine dehydrogenase, small subunit; Region: xanthine_xdhA; TIGR02963" /db_xref="CDD:163087" misc_feature complement(1140877..1141146) /locus_tag="Alide_1071" /note="[2Fe-2S] binding domain; Region: Fer2_2; pfam01799" /db_xref="CDD:190116" misc_feature complement(1139932..1140237) /locus_tag="Alide_1071" /note="CO dehydrogenase flavoprotein C-terminal domain; Region: CO_deh_flav_C; pfam03450" /db_xref="CDD:146206" gene complement(1141635..1141970) /locus_tag="Alide_1072" /db_xref="GeneID:10103106" CDS complement(1141635..1141970) /locus_tag="Alide_1072" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: har:HEAR2969 hypothetical protein" /codon_start=1 /transl_table=11 /product="cupin 2 conserved barrel domain protein" /protein_id="YP_004125725.1" /db_xref="GI:319761788" /db_xref="InterPro:IPR013096" /db_xref="GeneID:10103106" /translation="MALPHVAPGEITRLEPLGERLTDTVSTALFKAAQLEVVRLVLPR GHTMREHRVQCEITLQCMEGALDLTVDGRTQRMQAGDLVYLAAGQPHALAAVQDTSLL LTICLLPAA" misc_feature complement(1141641..1141970) /locus_tag="Alide_1072" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene complement(1141995..1143401) /locus_tag="Alide_1073" /db_xref="GeneID:10103107" CDS complement(1141995..1143401) /locus_tag="Alide_1073" /inference="protein motif:PFAM:PF01520" /note="KEGG: ajs:Ajs_0983 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin" /codon_start=1 /transl_table=11 /product="cell wall hydrolase/autolysin" /protein_id="YP_004125726.1" /db_xref="GI:319761789" /db_xref="GO:0008745" /db_xref="InterPro:IPR002508" /db_xref="GeneID:10103107" /translation="MSDAPLPHPLHTRRTLLQAGSLVLLLGRQQIARGATIVAVRVWP APEYSRVTIESDRQLVAKQFFVPTPPRLAVDIEGLDLDPSLRELVAKVRPDDPNIAGI RVGQYAPGVVRLVVDLKQAARPQVFTLQPVAAYQHRLVFDLYPAVPPDPLEALIAERL RDAGSSAGAPQPAAPDIAKAPAPDPLDELIAQHSLKPGMPTPPAPGNAPAPAAPPRTR GAAPATARATDRLIIVALDPGHGGEDPGAIGPGGTREKDVVLKVAHQLRDRINATQVG GNPMRAFLTRDGDYFVPLGTRVEKARRVQADLFVSIHADAFTTPSARGASVFALSQSG ASSSAARWLANKENEADLIGGVNVGSQDRHVQRALLDMSTTAQINDSLKLGSVLLGEI GGMARLHKPRVEQAGFAVLKAPDIPSVLVETAFISNPEEEAKLRSAAYQEQLADALMR GIIRYFAKNPPLARSRSV" misc_feature complement(1143009..1143317) /locus_tag="Alide_1073" /note="Localisation of periplasmic protein complexes; Region: AMIN; pfam11741" /db_xref="CDD:152177" misc_feature complement(1142043..1142705) /locus_tag="Alide_1073" /note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696" /db_xref="CDD:119407" misc_feature complement(order(1142136..1142138,1142463..1142465, 1142637..1142639,1142682..1142684)) /locus_tag="Alide_1073" /note="active site" /db_xref="CDD:119407" misc_feature complement(order(1142463..1142465,1142637..1142639, 1142682..1142684)) /locus_tag="Alide_1073" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:119407" gene complement(1143398..1143907) /locus_tag="Alide_1074" /db_xref="GeneID:10103108" CDS complement(1143398..1143907) /locus_tag="Alide_1074" /inference="protein motif:PFAM:PF02367" /note="KEGG: dia:Dtpsy_0899 protein of unknown function UPF0079; manually curated; PFAM: Uncharacterised protein family UPF0079, ATPase" /codon_start=1 /transl_table=11 /product="uncharacterized protein family upf0079, atpase" /protein_id="YP_004125727.1" /db_xref="GI:319761790" /db_xref="InterPro:IPR003442" /db_xref="GeneID:10103108" /translation="MTAAHHQHPIVETPRRLSLRWQDEDDTARFAARLAAQPGLANAF IALHGDLGAGKTTLVRHLLRALGVAGRIKSPTYAVVEPHQAPGLFIWHFDFYRFHDPR EWEDAGFRDIFASPGLKLAEWPDNAGSLAPPADIALYIEAEDDLARHVTLQAHTPLGS AILQGLDTP" misc_feature complement(1143410..1143841) /locus_tag="Alide_1074" /note="Uncharacterised P-loop hydrolase UPF0079; Region: UPF0079; cl00520" /db_xref="CDD:186054" gene 1143902..1144972 /locus_tag="Alide_1075" /pseudo /db_xref="GeneID:10103109" gene complement(1145031..1145948) /locus_tag="Alide_1076" /db_xref="GeneID:10103110" CDS complement(1145031..1145948) /locus_tag="Alide_1076" /inference="protein motif:PFAM:PF03547" /note="PFAM: Auxin Efflux Carrier; KEGG: dia:Dtpsy_0901 auxin efflux carrier" /codon_start=1 /transl_table=11 /product="auxin efflux carrier" /protein_id="YP_004125728.1" /db_xref="GI:319761791" /db_xref="InterPro:IPR004776" /db_xref="GeneID:10103110" /translation="MLRAVNYAQLLFPDFSLILCGYLICRYTPLNRSVWQPVESLVYY LLFPVLLFQSIVKSPIDVGEAASLVAAGLGTGLCGVALAYSLPHLPWLGRHIDRRDHA AAAQVAFRFNSFIVLALADRLAGAQGLLMVAVLIGVCVPVLNVAAVWPMARGSQQGFV RELLRNPLIIATVTGLVANLLGFRIPPWLEPSVSRIGAASLALGLMAAGAGMQFGLLT RSKLLSASVLFIRHLAQPLIAWAFARLLRLDATQTTVLMAFCAVSTASSCYVLAARMG YNGAYVAGLVTLSTVLGVASLTFALGMLR" misc_feature complement(1145046..1145924) /locus_tag="Alide_1076" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene 1146141..1147106 /locus_tag="Alide_1077" /db_xref="GeneID:10103111" CDS 1146141..1147106 /locus_tag="Alide_1077" /inference="similar to AA sequence:KEGG:Dtpsy_0902" /note="KEGG: dia:Dtpsy_0902 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125729.1" /db_xref="GI:319761792" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103111" /translation="MQRRNCLALALLAATAGTAFAQAYPNKPVKLLVPFAAGGTTDII ARVIADPLSRALGQSVVVENRGGGGGIIGAQETARATPDGYNLGIATVSTTAANPAIN TKVPYNPLTDFTPIINIAATPNIIAVHPSFPAKDYKSFLAELQKNPGKYSYASSGTGG IGHLLMELYKSLSNTFVTHIPYRGAGPALNDTVAGQVPIIFDNLPSALPFIKSGKLVP IVVSAPQRVAALPNVPTFKEVGLEPVNRMAYYGILGPKGLPKDVVDKISAGTKKALED PAVRKRIEDTDSIIVANTPEQFAEQIKAEFEIYKQVVQKQKLTLE" sig_peptide 1146141..1146206 /locus_tag="Alide_1077" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.954 at residue 22" misc_feature 1146210..1147094 /locus_tag="Alide_1077" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1146270..1147085 /locus_tag="Alide_1077" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1147154..1148053 /locus_tag="Alide_1078" /db_xref="GeneID:10103112" CDS 1147154..1148053 /locus_tag="Alide_1078" /inference="protein motif:TFAM:TIGR02225" /note="KEGG: dia:Dtpsy_0903 tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein" /codon_start=1 /transl_table=11 /product="tyrosine recombinase xerd" /protein_id="YP_004125730.1" /db_xref="GI:319761793" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="InterPro:IPR004107" /db_xref="InterPro:IPR011932" /db_xref="GeneID:10103112" /translation="MLPESQNAIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQ QPPLALDATAEHHLSGYFAARHAQTRATSANRRLTVLRRYFHWALRERRIAQDPTVRL LAARQPLRVPKTLTQAQVEALLHAPDTATALGLRDRTMLELMYASGLRVSELVTLKTF QLGLTEGVLRITGKGGKERLVPFGEEARRWLERYLAEGRGAILAGRQTDDLFVTQRGS AMSRVMFWVIVKKCAQLAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADIST TTIYTHVARERLKQLHAQHHPRG" misc_feature 1147154..1148050 /locus_tag="Alide_1078" /note="site-specific tyrosine recombinase XerD; Reviewed; Region: xerD; PRK00283" /db_xref="CDD:178959" misc_feature 1147178..1148029 /locus_tag="Alide_1078" /note="N- and C-terminal domains. XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid...; Region: INT_XerDC; cd00798" /db_xref="CDD:29499" misc_feature order(1147601..1147603,1147673..1147675,1147886..1147888, 1147895..1147897,1147964..1147966,1147991..1147993) /locus_tag="Alide_1078" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29499" misc_feature order(1147601..1147603,1147886..1147888,1147895..1147900, 1147991..1147993) /locus_tag="Alide_1078" /note="active site" /db_xref="CDD:29499" gene complement(1148326..1149387) /locus_tag="Alide_1079" /db_xref="GeneID:10103113" CDS complement(1148326..1149387) /locus_tag="Alide_1079" /inference="protein motif:TFAM:TIGR00229" /note="KEGG: ctt:CtCNB1_2005 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein" /codon_start=1 /transl_table=11 /product="pas sensor protein" /protein_id="YP_004125731.1" /db_xref="GI:319761794" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR013655" /db_xref="GeneID:10103113" /translation="MRISLPVTASEFTFDERDTLVSVTDTSGSITYCNHAFIHVSGYA REELLGQPHNMIRHPDMPAEAFRDMWETIASGRPWTGLVKNRRKNGDFYWVQANVTPM REGDRITGLLSVRTQPMHEQVQAVQALYATMRAQAEAGQQFVRTGSCALPAPDADPAT LADDVSAPLPSVVNAMKHDLTLLRRGEMLAVHCLAGRVPAAVRGHDPAQDHLTQERKP MTINTTLNKVAASVPECLAAGYVDTASGMLLAIKTVDSHPREVIDLVAAATADLFNGP NVPLIERMFKKSRGLQDNDDHHYFQEIIVNSDNLIHVCLRGKTQPDYVAVFVCRRTAN LGMALTKARIAMPELEAAL" misc_feature complement(1149031..1149336) /locus_tag="Alide_1079" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(1149043..1149300) /locus_tag="Alide_1079" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature complement(order(1149118..1149120,1149133..1149135, 1149211..1149222,1149259..1149261,1149277..1149279, 1149289..1149291)) /locus_tag="Alide_1079" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(1149091..1149093,1149097..1149099, 1149181..1149186,1149193..1149195,1149217..1149219, 1149229..1149231)) /locus_tag="Alide_1079" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" gene 1149659..1150642 /locus_tag="Alide_1080" /db_xref="GeneID:10103114" CDS 1149659..1150642 /locus_tag="Alide_1080" /inference="similar to AA sequence:KEGG:Ajs_0989" /note="KEGG: ajs:Ajs_0989 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125732.1" /db_xref="GI:319761795" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103114" /translation="MTDSLRRRLLAALPLTLLPWAASAQPAAPWPARPIRMVVAYPAG GVSDVVARALGEKLAQRLGTPVVVENKAGAGGTIGMDAVAKAAPDGYTLGFSAISPLV LNPHLGKSPFDPERDIAPVASVMYSPVLLLGTQALQARDFQGLLAGARAHPGQVRWAT SGLASLGHIMLEHIMQGAGVQITHVPYKGGGQQLNDALSGQFEVLSTNAGPAVMQHIQ AGKLHPLAVGAPRRLESLPDVPTLQELKLPAANLNSVFGIFAPAGTPAPILERLNAEI NRALAQPDVKVRLEASDNVPTGGTAAQFQRQIAAESESNARIIRAAGIRLN" sig_peptide 1149659..1149733 /locus_tag="Alide_1080" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.994 at residue 25" misc_feature 1149761..1150633 /locus_tag="Alide_1080" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1149806..1150630 /locus_tag="Alide_1080" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1150662..1151948) /locus_tag="Alide_1081" /db_xref="GeneID:10103115" CDS complement(1150662..1151948) /locus_tag="Alide_1081" /inference="protein motif:PFAM:PF00563" /note="KEGG: dia:Dtpsy_0905 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein" /codon_start=1 /transl_table=11 /product="eal domain protein" /protein_id="YP_004125733.1" /db_xref="GI:319761796" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013976" /db_xref="InterPro:IPR014408" /db_xref="GeneID:10103115" /translation="MSSTADPDSSLSTVPQSGPVDADNLVIIARQAILDEQRAVYGYE LFDRNTAADSHTAASDASLLFNALSYAGSEALIGKTIVFVNCTHESLAGGHLELIHPD KVVLEVPTLAAGATPEQIEQMLPTLQSLRTRGFRLAFSQDVLRRAYMGWLPLASFIKL DMQAFKPELAEPLVKFARANSQATLIAEKVETAEQHERMAALGVKLFQGYWFARPALV KAQTIRPSQATIIQLINLVRQQAGTAEIEDLLKKDPTLSFNLLRFINSSGFGLSCEIT SFRHAVMILGLKKMFRWAALLLTTSRKDGAPPAVGQTAVVRGRLMELLAAELLPPEEC DNAFVVGVFSLLDTMLGIPMKRALESVALPEPVLDALLRNQGVFAPFLELTRACESGD DEAFARTAEALHLSNRQVNWAHLQALAWADSMTAEA" misc_feature complement(1150674..1151873) /locus_tag="Alide_1081" /note="Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms]; Region: COG3434" /db_xref="CDD:33240" misc_feature complement(1151304..>1151654) /locus_tag="Alide_1081" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cl00290" /db_xref="CDD:193752" misc_feature complement(<1151085..1151261) /locus_tag="Alide_1081" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(1151986..1153254) /locus_tag="Alide_1082" /db_xref="GeneID:10103116" CDS complement(1151986..1153254) /locus_tag="Alide_1082" /inference="protein motif:PFAM:PF00563" /note="KEGG: dia:Dtpsy_0906 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein" /codon_start=1 /transl_table=11 /product="eal domain protein" /protein_id="YP_004125734.1" /db_xref="GI:319761797" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013976" /db_xref="InterPro:IPR014408" /db_xref="GeneID:10103116" /translation="MPSTPSAPHALGPSAPAPGAGAMIARQAIMDDRQAVVGYELFNR SRTQTGHTAASDVLLVFTALSHAGSEELVGRMLIFVNCTHESLAGGHLELVNPDKVVL EIPPLGHVAAQEVQARLPILAGLRARGFHLAFGHQVLESAYAPWLPLADYIKLDMAVL APDQLAVLVSYAGRHSQARLIAEKIETAQQYDMVSSLGVRLFQGYLFSRPTLVEARLL SPSQASIVQLLNLVRSQAPTSEIEEALKKDAGLAFNLMRLINSAGLGLTREITSFRQA VLLLGLKKLFRWAALLLTVARSGGTPPAVGQTAVVRGRLMELLAREFMSPEQADQAFV IGVFSMLDQMLGMPLEPALSLLHLPDELAAALLRRDNAYGQLLTLAEACESSDDCRFD QAAQSLRLSSQQINLAHLQALAWADQMTQG" misc_feature complement(1152079..1153185) /locus_tag="Alide_1082" /note="Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms]; Region: COG3434" /db_xref="CDD:33240" misc_feature complement(1152610..>1152972) /locus_tag="Alide_1082" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cl00290" /db_xref="CDD:193752" misc_feature complement(<1152223..1152582) /locus_tag="Alide_1082" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(1153343..1154149) /locus_tag="Alide_1083" /db_xref="GeneID:10103117" CDS complement(1153343..1154149) /locus_tag="Alide_1083" /inference="protein motif:PFAM:PF04305" /note="KEGG: dia:Dtpsy_0907 protein of unknown function DUF455; manually curated; PFAM: protein of unknown function DUF455" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125735.1" /db_xref="GI:319761798" /db_xref="InterPro:IPR007402" /db_xref="InterPro:IPR011197" /db_xref="GeneID:10103117" /translation="MELRQRALQVLCLPDPEEKSAAALDMQAREASFSIASHTPVPPP DAYALPGRPARPELLHHQAVARRSPATPQGRAALIHAIAHIEFNAINLALDAIWRFPA MPDRFYLDWLRVAAEEARHFRLLRDHMREHLGHDYGDFPAHQGLWSMCEKTAHDVVAR MALVPRTLEARGLDATPLIQHKLRSVGTPDALAAVGILDIILAEEVGHVAIGNHWYAW LCARQGLDPVAHYALLAERYEAPRPKPPINAAARRAAGFSEAELLWLQHG" misc_feature complement(1153502..1153921) /locus_tag="Alide_1083" /note="Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cd00657" /db_xref="CDD:153097" misc_feature complement(order(1153526..1153528,1153535..1153537, 1153643..1153645,1153787..1153789,1153796..1153798, 1153892..1153894)) /locus_tag="Alide_1083" /note="dinuclear metal binding motif [ion binding]; other site" /db_xref="CDD:153097" gene 1154199..1154723 /locus_tag="Alide_1084" /db_xref="GeneID:10103118" CDS 1154199..1154723 /locus_tag="Alide_1084" /inference="similar to AA sequence:KEGG:Ajs_0993" /note="KEGG: ajs:Ajs_0993 transferase hexapeptide protein" /codon_start=1 /transl_table=11 /product="transferase hexapeptide protein" /protein_id="YP_004125736.1" /db_xref="GI:319761799" /db_xref="InterPro:IPR001451" /db_xref="GeneID:10103118" /translation="MAIYELDGVAPQVAASAWVADSAEVMGNVVLAEDASVWFGTVVR GDCESIRIGAGSNVQDASVLHADVGQPLVVGDRVTVGHKVMLHGCTIGDESLIGIGAV VLNGARIGKNCLVGAGALVTEGKEFPDGSMILGSPARVVRQLSPEQIEGLRRSAQHYM ENARRFKAGLRKLD" misc_feature 1154199..1154720 /locus_tag="Alide_1084" /note="Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663" /db_xref="CDD:31007" misc_feature 1154232..1154690 /locus_tag="Alide_1084" /note="Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon...; Region: LbH_gamma_CA_like; cd04645" /db_xref="CDD:100051" misc_feature order(1154250..1154252,1154256..1154258,1154262..1154267, 1154274..1154276,1154310..1154312,1154319..1154324, 1154328..1154330,1154334..1154336,1154376..1154381, 1154391..1154393,1154442..1154453,1154457..1154459, 1154493..1154495) /locus_tag="Alide_1084" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100051" misc_feature order(1154391..1154393,1154442..1154444,1154457..1154459) /locus_tag="Alide_1084" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:100051" gene 1154733..1155719 /locus_tag="Alide_1085" /db_xref="GeneID:10103119" CDS 1154733..1155719 /locus_tag="Alide_1085" /inference="protein motif:PFAM:PF01430" /note="PFAM: Hsp33 protein; KEGG: ajs:Ajs_0994 HSP33 protein" /codon_start=1 /transl_table=11 /product="hsp33 protein" /protein_id="YP_004125737.1" /db_xref="GI:319761800" /db_xref="GO:0051082" /db_xref="InterPro:IPR000397" /db_xref="GeneID:10103119" /translation="MSELHKFLFDGLPVRGMIVRLTGAWTELLARRAGNTETGAYPAP VSELLGEMAAAAVLMQSNIKFNGALVLQIFGDGPVKLAVAEVRSDLSLRATASVSGEL PAHAGMADLVNAGGGGRCAITLDPQDRLPGQQPYQGVVPLHGDRKEKLHRLSDVLQHY MLQSEQLDTTLVLAANDEVAAGLLIQRMPAKGEGNLAGAAGRGDEDQIGLNEDYNRIA TLAASLTRDELLSLDVETILRRLFWEERLLRFVPQRGESGPRFACSCSRERVGNMLRS LGIDEVQGILDERGSIEVGCEYCGQQYHFDAVDAAQLFTAPGQQPPVSSSVQ" misc_feature 1154742..1155674 /locus_tag="Alide_1085" /note="Hsp33-like chaperonin; Reviewed; Region: hslO; PRK00114" /db_xref="CDD:178874" misc_feature 1154742..1155650 /locus_tag="Alide_1085" /note="Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat...; Region: Hsp33; cd00498" /db_xref="CDD:29605" misc_feature order(1154775..1154777,1155210..1155212,1155222..1155230, 1155288..1155290,1155519..1155521) /locus_tag="Alide_1085" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29605" misc_feature order(1154775..1154777,1155270..1155272,1155276..1155278, 1155288..1155299) /locus_tag="Alide_1085" /note="domain crossover interface; other site" /db_xref="CDD:29605" misc_feature order(1155519..1155521,1155525..1155527,1155618..1155620, 1155627..1155629) /locus_tag="Alide_1085" /note="redox-dependent activation switch; other site" /db_xref="CDD:29605" gene 1155784..1156545 /locus_tag="Alide_1086" /db_xref="GeneID:10103120" CDS 1155784..1156545 /locus_tag="Alide_1086" /inference="protein motif:PFAM:PF00497" /note="KEGG: rfr:Rfer_1525 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_004125738.1" /db_xref="GI:319761801" /db_xref="GO:0005215" /db_xref="InterPro:IPR001320" /db_xref="InterPro:IPR001638" /db_xref="InterPro:IPR018313" /db_xref="GeneID:10103120" /translation="MQKKIAALALVGLAGAACAADLRVGLNPAYEPFESKTASGEIVG FDVDIANALCEQIKRKCVFVESEWDSIIPGLQAKKFDVVISSMSITPERARVVDFTNR YYKTPSAIVVKKSVKYEGPASLKGMKIGVLKSSTQEKWALGELKPAGVTVVPYQSQNQ VYLDIQAGRLDGTVADKVEVNGGFLRKPEGKDYGYVGPDQYDAKYYGEGIGIALRKGQ GDLKKQLNEAIDTIRANGTYARIAKKYFDFDPYGK" sig_peptide 1155784..1155843 /locus_tag="Alide_1086" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 20" misc_feature 1155850..1156521 /locus_tag="Alide_1086" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature 1155850..1156521 /locus_tag="Alide_1086" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature order(1155871..1155873,1155985..1155987,1156060..1156062, 1156189..1156191,1156309..1156311) /locus_tag="Alide_1086" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1156258..1156260,1156270..1156272,1156288..1156290) /locus_tag="Alide_1086" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 1156399..1156416 /locus_tag="Alide_1086" /note="hinge residues; other site" /db_xref="CDD:29040" gene 1156576..1157265 /locus_tag="Alide_1087" /db_xref="GeneID:10103121" CDS 1156576..1157265 /locus_tag="Alide_1087" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: rfr:Rfer_1524 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004125739.1" /db_xref="GI:319761802" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10103121" /translation="MRDYYLAILNGSLLTVGVSLASLAVATLLGLAGAAAKLSGRRPL VWLAQLYTTVVRGIPELLMMLLVFYGGAIGLNSLAELWGNQEGVDLDPFVAGVLTIGF IYGAYMTETFRGAILAIPRGQMEAAWAFGMGRLRTFVRITLPQMVRYALPSFTNNWLV LIKATALVSLIGLHDMTYLAKQSSAAAREPFAFFLFTAAIYLAYTSLSLWALRAVSRR YSLGTDRVQLL" sig_peptide 1156576..1156650 /locus_tag="Alide_1087" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.912) with cleavage site probability 0.365 at residue 25" misc_feature 1156696..1157184 /locus_tag="Alide_1087" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1156717..1156728,1156732..1156761,1156768..1156773, 1156777..1156779,1156879..1156884,1156888..1156890, 1156894..1156896,1156903..1156908,1156912..1156914, 1156924..1156929,1156936..1156938,1156987..1156989, 1157029..1157034,1157041..1157043,1157062..1157073, 1157080..1157085,1157122..1157127,1157155..1157160, 1157167..1157172,1157176..1157181) /locus_tag="Alide_1087" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1156735..1156779,1157062..1157079) /locus_tag="Alide_1087" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1156777..1156779,1156864..1156866,1157080..1157082, 1157116..1157118,1157125..1157127,1157155..1157157) /locus_tag="Alide_1087" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1156939..1156977,1156993..1156998,1157008..1157010) /locus_tag="Alide_1087" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1157262..1157975 /locus_tag="Alide_1088" /db_xref="GeneID:10103122" CDS 1157262..1157975 /locus_tag="Alide_1088" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: rfr:Rfer_1523 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004125740.1" /db_xref="GI:319761803" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10103122" /translation="MNWLVIFEPDTLALYGEGLLVTLQLTLYSLGLGAVLALACALAL VGSNAWLRWPAQAFTYFMRGTPLLIQVYLIYYGVAQLEWVQARWDDVWPWTNFKEPFF CALLSFSLNTAAYTAETLAGSIRETSKGEVEAARAMGMGPWMLMRRIVLPSAIRRMLP AYGNEVVMMLHSSSLASTVPALTDLTGAASRVYADFYLPFEAYLFAAAIYLCITLCLI GATRLVERRFLGYLAPRKA" misc_feature 1157409..1157906 /locus_tag="Alide_1088" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1157424..1157435,1157439..1157468,1157475..1157480, 1157484..1157486,1157589..1157594,1157598..1157600, 1157604..1157606,1157613..1157618,1157622..1157624, 1157634..1157639,1157646..1157648,1157697..1157699, 1157739..1157744,1157751..1157753,1157772..1157783, 1157790..1157795,1157835..1157840,1157868..1157873, 1157880..1157885,1157889..1157894,1157901..1157906) /locus_tag="Alide_1088" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1157442..1157486,1157772..1157789) /locus_tag="Alide_1088" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1157484..1157486,1157574..1157576,1157790..1157792, 1157829..1157831,1157838..1157840,1157868..1157870) /locus_tag="Alide_1088" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1157649..1157687,1157703..1157708,1157718..1157720) /locus_tag="Alide_1088" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1157986..1158765 /locus_tag="Alide_1089" /db_xref="GeneID:10103123" CDS 1157986..1158765 /locus_tag="Alide_1089" /inference="protein motif:PFAM:PF00005" /note="KEGG: rfr:Rfer_1521 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125741.1" /db_xref="GI:319761804" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103123" /translation="MNRNTPVKLQALDIHKRYGANEVLKGVSLTAHAGDVISIIGSSG SGKSTLLRCINLLERPQQGRILVAGEELRLRPAQDGALEAADQKQLQRLRTRLAMVFQ HFNLWAHMTALANIIEVPVHVLGLPRDEAVERARKYLRLVGLEGREDAYPNHMSGGQQ QRVAIARALAVEPEVMLFDEPTSALDPELVGEVLRVMQVLAQEGRTMLVVTHEMGFAR EVSNHVIFLHQGLVEEQGDPREVMANPRSERLARFLSGNLK" misc_feature 1157995..1158750 /locus_tag="Alide_1089" /note="ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; Region: HisP; COG4598" /db_xref="CDD:34233" misc_feature 1158010..1158681 /locus_tag="Alide_1089" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 1158106..1158129 /locus_tag="Alide_1089" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(1158115..1158120,1158124..1158132,1158289..1158291, 1158520..1158525,1158619..1158621) /locus_tag="Alide_1089" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 1158280..1158291 /locus_tag="Alide_1089" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 1158448..1158477 /locus_tag="Alide_1089" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 1158508..1158525 /locus_tag="Alide_1089" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 1158532..1158543 /locus_tag="Alide_1089" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 1158607..1158627 /locus_tag="Alide_1089" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene complement(1158835..1159122) /locus_tag="Alide_1090" /db_xref="GeneID:10103124" CDS complement(1158835..1159122) /locus_tag="Alide_1090" /inference="protein motif:PFAM:PF04977" /note="PFAM: Septum formation initiator; KEGG: dia:Dtpsy_0911 septum formation initiator" /codon_start=1 /transl_table=11 /product="septum formation initiator" /protein_id="YP_004125742.1" /db_xref="GI:319761805" /db_xref="InterPro:IPR007060" /db_xref="GeneID:10103124" /translation="MVTRIVPLVLLLLLVAIHAQLWAGRGSVGNVQDLRQQIAAQQAA NAQARLANERLAAEVNDLKGGLEMVEEKARGELGMVKQGEIYVQVVRPAQR" sig_peptide complement(1159051..1159122) /locus_tag="Alide_1090" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.701 at residue 24" misc_feature complement(1158838..1159062) /locus_tag="Alide_1090" /note="Septum formation initiator; Region: DivIC; cl11433" /db_xref="CDD:187037" gene complement(1159150..1160436) /locus_tag="Alide_1091" /db_xref="GeneID:10103125" CDS complement(1159150..1160436) /locus_tag="Alide_1091" /EC_number="4.2.1.11" /inference="protein motif:TFAM:TIGR01060" /note="TIGRFAM: enolase; KEGG: aav:Aave_1322 phosphopyruvate hydratase; PFAM: Enolase-like" /codon_start=1 /transl_table=11 /product="enolase" /protein_id="YP_004125743.1" /db_xref="GI:319761806" /db_xref="GO:0000287" /db_xref="GO:0004634" /db_xref="InterPro:IPR000941" /db_xref="InterPro:IPR020809" /db_xref="InterPro:IPR020810" /db_xref="InterPro:IPR020811" /db_xref="GeneID:10103125" /translation="MSAIVDIVGREVLDSRGNPTVECDVLLESGVMGRAAVPSGASTG SREAIELRDGDKGRYLGKGVLKAVEHINTEISEAVLGLDASEQAFLDKTLIDLDGTDN KSRLGANAMLAVSMAVARAAAEEAGLPLYRYFGGMNGCQLPVPMMNVINGGAHANNTL DLQEFMIIPVGAPSFREALRWGAEVFHALKKIINDRGMSTAVGDEGGFAPSVENHEAA IQLILEAIDKAGYTAGEQIVLGLDCAASEFYKDGKYVLEGEGGIQLTAQQWTDMLAAW VDKYPIISIEDGMAEGDWDGWKLLTERLGKNVQLVGDDLFVTNTKILKEGIDKNIANS ILIKINQIGTLTETFAAIEMAKRAGYTAVISHRSGETEDSTIADIAVGLNAGQIKTGS LSRSDRIAKYNQLLRIEEDLGDVAEYPGRAAFYNLR" misc_feature complement(1159153..1160436) /locus_tag="Alide_1091" /note="enolase; Provisional; Region: eno; PRK00077" /db_xref="CDD:178845" misc_feature complement(1159204..1160421) /locus_tag="Alide_1091" /note="Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313" /db_xref="CDD:48188" misc_feature complement(order(1159207..1159209,1159216..1159221, 1159228..1159230,1159237..1159242,1159246..1159254, 1159321..1159329,1159804..1159806,1159810..1159812, 1159831..1159836,1159873..1159878,1159885..1159890, 1159897..1159902,1159963..1159971,1160335..1160337, 1160371..1160373,1160383..1160409,1160413..1160415)) /locus_tag="Alide_1091" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48188" misc_feature complement(order(1159498..1159500,1159579..1159581, 1159711..1159713,1160311..1160313)) /locus_tag="Alide_1091" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:48188" misc_feature complement(order(1159270..1159272,1159333..1159341, 1159423..1159425,1159822..1159824,1159972..1159974)) /locus_tag="Alide_1091" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:48188" gene complement(1160619..1160909) /locus_tag="Alide_1092" /db_xref="GeneID:10103126" CDS complement(1160619..1160909) /locus_tag="Alide_1092" /inference="protein motif:PFAM:PF07045" /note="PFAM: protein of unknown function DUF1330; KEGG: dac:Daci_5107 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125744.1" /db_xref="GI:319761807" /db_xref="InterPro:IPR010753" /db_xref="GeneID:10103126" /translation="MASGYIIASVTVTDPAQYEEYKKWSSEAMRAHGAEVCVRGGKVE VLEGDWNPGRTVVLKFPSFEAARAFHDSAEYRKARAAREGAAVMRMVVVEGL" misc_feature complement(1160625..1160909) /locus_tag="Alide_1092" /note="Protein of unknown function (DUF1330); Region: DUF1330; cl02288" /db_xref="CDD:194288" gene complement(1160912..1161769) /locus_tag="Alide_1093" /db_xref="GeneID:10103127" CDS complement(1160912..1161769) /locus_tag="Alide_1093" /inference="protein motif:TFAM:TIGR01362" /note="KEGG: dac:Daci_5106 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxyphosphooctonate aldolase" /protein_id="YP_004125745.1" /db_xref="GI:319761808" /db_xref="GO:0008676" /db_xref="InterPro:IPR006218" /db_xref="InterPro:IPR006269" /db_xref="GeneID:10103127" /translation="MQLCGFDIGLDRPFFLIAGPCVVESEQLQMDVAGRLQEITASLG IPFIFKSSYDKANRSSGASFRGPGMEKGLEILAKVKKQLGVPVLTDVHTEAEIPAVAQ VVDVLQTPAFLCRQTDFIRAVAQSGKPVNIKKGQFLAPHDMKNVIDKARAAAREAGLS EDRFMACERGASFGYNNLVSDMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGMRE MVPVLSRAAVAVGVAGLFMETHPDPASALSDGPNAVPLKHMRALLETLVQLDAVTKKN GFLENDFGA" misc_feature complement(1160951..1161760) /locus_tag="Alide_1093" /note="NeuB family; Region: NeuB; cl00496" /db_xref="CDD:186036" misc_feature complement(1160948..1161748) /locus_tag="Alide_1093" /note="DAHP synthetase I family; Region: DAHP_synth_1; pfam00793" /db_xref="CDD:189723" gene complement(1161775..1163424) /locus_tag="Alide_1094" /db_xref="GeneID:10103128" CDS complement(1161775..1163424) /locus_tag="Alide_1094" /EC_number="6.3.4.2" /inference="protein motif:TFAM:TIGR00337" /note="TIGRFAM: CTP synthase; KEGG: dia:Dtpsy_0915 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I" /codon_start=1 /transl_table=11 /product="ctp synthase" /protein_id="YP_004125746.1" /db_xref="GI:319761809" /db_xref="GO:0003883" /db_xref="InterPro:IPR000991" /db_xref="InterPro:IPR004468" /db_xref="InterPro:IPR017456" /db_xref="InterPro:IPR017926" /db_xref="GeneID:10103128" /translation="MTKFVFVTGGVVSSLGKGIASASLAAILESRGLKVTLIKLDPYI NVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFIETRMKQANNFTTGRIYQSVLEKE RRGDYLGKTVQVIPHVTNEIQEFIKRGAGIGTPDAVDVAICEVGGTVGDIESLPFLEA VRQLSLKLGPNNSAFVHLTYLPWIATAGELKTKPTQHTVQKLREIGIQPDALLCRAHH AVPEEEREKISLFTNVAEWGVISMWDVDTIYKVPRMLHEQGLDGLICDKLRLNTPPAN LKRWDALVHETEHPQGEVQIAMVGKYVELSDAYKSVNEALKHAGMQSHVRVKITHVDS ETITDANAADKLGQYDAILVPGGFGSRGVEGKISTARYARERKVPYLGICLGMQVATI EYARHMAGLEGANSTEFDPHCKHPVIALITEWKDEDGTIKTRDANSDLGGTMRLGAQS SDVQPGTLAHSIYGSVVTERHRHRYEANTQYLDKLRAAGLVISALTQREHLTEIVELP REVHPWFIGVQFHPEFKSTPWNGHPLFNAFVKAAVEHQKKA" misc_feature complement(1161781..1163424) /locus_tag="Alide_1094" /note="CTP synthetase; Validated; Region: pyrG; PRK05380" /db_xref="CDD:180047" misc_feature complement(1162645..1163418) /locus_tag="Alide_1094" /note="CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer...; Region: CTGs; cd03113" /db_xref="CDD:48377" misc_feature complement(order(1162987..1162989,1162993..1162995, 1163200..1163205,1163212..1163214,1163218..1163220, 1163296..1163304,1163308..1163310,1163368..1163379, 1163386..1163388)) /locus_tag="Alide_1094" /note="Catalytic site [active]" /db_xref="CDD:48377" misc_feature complement(order(1162744..1162746,1162846..1162854, 1162984..1162986,1163308..1163310,1163371..1163385)) /locus_tag="Alide_1094" /note="Active site [active]" /db_xref="CDD:48377" misc_feature complement(order(1162744..1162746,1162846..1162854, 1162966..1162968,1162984..1162989,1163296..1163310)) /locus_tag="Alide_1094" /note="UTP binding site [chemical binding]; other site" /db_xref="CDD:48377" misc_feature complement(1161808..1162545) /locus_tag="Alide_1094" /note="Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746" /db_xref="CDD:153217" misc_feature complement(order(1161856..1161858,1161862..1161864, 1162000..1162011,1162201..1162203,1162261..1162263, 1162270..1162275,1162348..1162362)) /locus_tag="Alide_1094" /note="active site" /db_xref="CDD:153217" misc_feature complement(order(1162270..1162272,1162354..1162356)) /locus_tag="Alide_1094" /note="putative oxyanion hole; other site" /db_xref="CDD:153217" misc_feature complement(order(1161856..1161858,1161862..1161864, 1162273..1162275)) /locus_tag="Alide_1094" /note="catalytic triad [active]" /db_xref="CDD:153217" gene 1163500..1164726 /locus_tag="Alide_1095" /db_xref="GeneID:10103129" CDS 1163500..1164726 /locus_tag="Alide_1095" /EC_number="6.3.2.5" /inference="protein motif:TFAM:TIGR00521" /note="TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: dia:Dtpsy_0916 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein" /codon_start=1 /transl_table=11 /product="phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase" /protein_id="YP_004125747.1" /db_xref="GI:319761810" /db_xref="GO:0004632" /db_xref="GO:0004633" /db_xref="GO:0010181" /db_xref="InterPro:IPR003382" /db_xref="InterPro:IPR005252" /db_xref="InterPro:IPR007085" /db_xref="GeneID:10103129" /translation="MNALVGKHIVLGLSGGVACYKSAELTRLLVKAGATVQVVMTEAA EQFITPVTMQALSGRPVYTSQWDAREANNMPHINLSREADAILIAPCSADFAARLVQG RADELLSLLCLARPVDRVPLLVAPAMNREMWAHPATRRNLAQLAQDGAAVLGVGNGDQ ACGETGDGRMLEPAEILEDLAAFFAPKLLAGQRVLITAGPTFEAMDPVRGITNLSSGK MGFAIARAAREAGAEVTLVAGPVHLPTPRGVRRIDVRSAQNMLEAVEGQVPGATVFIA TAAVADWRPASSAEHKIKKDGSGQVPALAFVENPDILATVARSERARSGSLYCVGFAA ESENLLEHASAKRARKGVPLLVGNIGPATFGQDDNALLLVDAQGHQELPRAPKAELGR QLVAEIARRLGVAAAP" misc_feature 1163500..1164705 /locus_tag="Alide_1095" /note="bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated; Region: PRK05579" /db_xref="CDD:180143" misc_feature 1163515..1164060 /locus_tag="Alide_1095" /note="Flavoprotein; Region: Flavoprotein; cl08021" /db_xref="CDD:195652" misc_feature 1164070..1164660 /locus_tag="Alide_1095" /note="DNA / pantothenate metabolism flavoprotein; Region: DFP; cl04410" /db_xref="CDD:186628" gene 1164723..1165124 /locus_tag="Alide_1096" /db_xref="GeneID:10103130" CDS 1164723..1165124 /locus_tag="Alide_1096" /inference="similar to AA sequence:KEGG:Vapar_3441" /note="KEGG: vap:Vapar_3441 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125748.1" /db_xref="GI:319761811" /db_xref="GeneID:10103130" /translation="MNGPNLGPGGPEGPPDGDYARYVERLMQRADQQRGAAQAAAKAG DARAAPAPAQAASAPSAAAIAGGQPAGKARGRAAARQLPAKWPLLLWILFVLLMWFAP SLLPFVVVGLVLAGVGYSLWKARRKSGGERR" gene 1165193..1165639 /locus_tag="Alide_1097" /db_xref="GeneID:10103131" CDS 1165193..1165639 /locus_tag="Alide_1097" /EC_number="3.6.1.23" /inference="protein motif:TFAM:TIGR00576" /note="TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: dia:Dtpsy_0917 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase" /codon_start=1 /transl_table=11 /product="deoxyuridine 5'-triphosphate nucleotidohydrolase dut" /protein_id="YP_004125749.1" /db_xref="GI:319761812" /db_xref="GO:0004170" /db_xref="InterPro:IPR008180" /db_xref="InterPro:IPR008181" /db_xref="GeneID:10103131" /translation="MKIDVKILDPRMADQLPAYATPGSAGLDLRACLDAPLLLAPNAW QLVPTGIAIYLKDPGYAALILPRSGLGHKHGIVLGNLVGLIDSDYQGQLMVSAWNRSD TAFTLQPMERLAQLVIVPVVQAQFNVVTDFPASERGEGGYGSTGKH" misc_feature 1165265..1165546 /locus_tag="Alide_1097" /note="Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557" /db_xref="CDD:143638" misc_feature order(1165265..1165270,1165304..1165306,1165319..1165324, 1165328..1165330,1165379..1165381,1165385..1165402, 1165418..1165426,1165442..1165444,1165451..1165453, 1165472..1165474,1165478..1165480,1165484..1165486, 1165490..1165492,1165502..1165516,1165523..1165525, 1165535..1165537) /locus_tag="Alide_1097" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:143638" misc_feature order(1165391..1165399,1165442..1165450,1165457..1165459, 1165469..1165474) /locus_tag="Alide_1097" /note="active site" /db_xref="CDD:143638" gene complement(1165646..1166170) /locus_tag="Alide_1098" /db_xref="GeneID:10103132" CDS complement(1165646..1166170) /locus_tag="Alide_1098" /inference="similar to AA sequence:KEGG:Dtpsy_0919" /note="KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase" /codon_start=1 /transl_table=11 /product="fkbp-type peptidyl-prolyl cis-trans isomerase" /protein_id="YP_004125750.1" /db_xref="GI:319761813" /db_xref="InterPro:IPR001179" /db_xref="GeneID:10103132" /translation="MEITEQCVVALTWVLKDTLGDELDVLDDPVEFLVGGDDLLARIE EALQGHGVGAELALHLEPEDAFGDYQDKLLFLEPRQLFPADIEEGMTFDGTALPQGVN PEAPRDALYTVAQIYPEHVVLDGNHPLAGIALRLQLKVHGVREATEEEIGRGTAGTGF FRIQPQAPGNELLH" misc_feature complement(<1165709..1166170) /locus_tag="Alide_1098" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587" /db_xref="CDD:187101" gene 1166224..1167348 /locus_tag="Alide_1099" /db_xref="GeneID:10103133" CDS 1166224..1167348 /locus_tag="Alide_1099" /inference="protein motif:SMART:SM00558" /note="SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: dia:Dtpsy_0920 cupin 4 family protein" /codon_start=1 /transl_table=11 /product="transcription factor jumonji jmjc domain-containing protein" /protein_id="YP_004125751.1" /db_xref="GI:319761814" /db_xref="InterPro:IPR003347" /db_xref="GeneID:10103133" /translation="MDVEQPLALLGGLSPAQFMRRHWHKKPLLVRQAMPGFKPLLTRA ELLELAGRDGVESRFIQDKAGRWVLRHGPLARRSLPPLGTPRWTVLVQGVDLHDDAVH ALMQQFRFVPEARLDDLMISYATDGGGVGPHFDNYDVFLLQAHGQRRWRIGRQKDKTL RPGLPLKILAAFEPEEEYLLEPGDMLYLPPGWAHDGIAEGECMTYSIGFRSPNGAQLA HEVLQRMAEAAADEEGAIYRDPQQPAVAGPGAIPAGLQEFARKAVQRALEQPQALECA LGEALTEPKPNVWFEPAQAGVMLESVALDRRTRMMYDDKHVFINGESYRAAGRDAALM RQLADERRLGARELARASDAALELLSTWCEAGWVHAGPAV" misc_feature 1166266..1167078 /locus_tag="Alide_1099" /note="Cupin superfamily protein; Region: Cupin_4; pfam08007" /db_xref="CDD:191926" gene 1167365..1167862 /locus_tag="Alide_1100" /db_xref="GeneID:10103134" CDS 1167365..1167862 /locus_tag="Alide_1100" /inference="similar to AA sequence:KEGG:Dtpsy_0921" /note="KEGG: dia:Dtpsy_0921 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125752.1" /db_xref="GI:319761815" /db_xref="GeneID:10103134" /translation="MPTAPQLPGGRFEGREAFQQLVRDALACAAREGWSELMLCDASF HDWPLGERAAVESLQQWARTGRRLTLIAAGYDEVVRRHARFVQWRVRWDHIIVCRRAG AADPQDLPSSIWSPHWVLHRHDPLRCRGVTGTEPERRILLRESLLEWVERKSSPGFPA STLGL" gene complement(1168428..1169516) /locus_tag="Alide_1101" /db_xref="GeneID:10103135" CDS complement(1168428..1169516) /locus_tag="Alide_1101" /inference="similar to AA sequence:KEGG:Ajs_1009" /note="KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein" /codon_start=1 /transl_table=11 /product="nlpb/dapx family lipoprotein" /protein_id="YP_004125753.1" /db_xref="GI:319761816" /db_xref="GeneID:10103135" /translation="MNATTRLGLLGLALTLSACSVLESDKIDYKSATKGPTLEVPPDL SQLSRETRYTVPGSAVSAAAFEAGQAQQPRGAASAAPQSIGDVRIERDGNQRWLVVNR APDQLWEPVRDFWLENGFVFTTEQPKLGILETDWAENRAKLPQDIIRSTIGKVFDSLY STGERDKFRTRLERTANGSTEIFITHRGMAEVYTNTQKDSTVWQPRPADPELETEFLR RLMVALGVSEEQSKAAAAAPMPVTPGARMATVNDVPVVQLDEGFDRAWRRVGVSLDRT GFTVEDRDRSKGVYFVRYVAPTDKKEQGFFSKLFSRSPDASAPLKYRIVVRSEGNQST VSVLNAAGAPETSANAQRIVRVLADDLK" sig_peptide complement(1169445..1169516) /locus_tag="Alide_1101" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.903) with cleavage site probability 0.628 at residue 24" misc_feature complement(1168446..1169468) /locus_tag="Alide_1101" /note="Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]; Region: NlpB; COG3317" /db_xref="CDD:33126" misc_feature complement(1168443..1169435) /locus_tag="Alide_1101" /note="NlpB/DapX lipoprotein; Region: Lipoprotein_18; pfam06804" /db_xref="CDD:148421" gene complement(1169551..1170447) /locus_tag="Alide_1102" /db_xref="GeneID:10103136" CDS complement(1169551..1170447) /locus_tag="Alide_1102" /inference="protein motif:TFAM:TIGR00674" /note="KEGG: dia:Dtpsy_0924 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_004125754.1" /db_xref="GI:319761817" /db_xref="GO:0008840" /db_xref="InterPro:IPR002220" /db_xref="InterPro:IPR005263" /db_xref="InterPro:IPR020625" /db_xref="GeneID:10103136" /translation="MTSPSAPLTGSIVALVTPMHDDGSVDYPTLRKLIDWHIQEGTDC IGVVGTTGESPTVNVDEHCEIIRVSVEQAAGRVPVMAGCGANSTAEAIELARFAKKVG ANSQLQVVPYYNKPTQEGQYRHFKAIAEAVGDLPMVLYNVPGRSVADMLHETVLRLTQ VPGIVGIKEATGNIERAQWLIRDVPKGFAVYSGDDPTAVALMLCGGQGNISVTANVAP RLMHELCVAAIAGDARRAMDIQFRLLPVHKHLFVEANPIPVKWAMQRMGLCGGAMRLP MTPLSQGNEAVVETALRAAGLL" misc_feature complement(1169572..1170426) /locus_tag="Alide_1102" /note="Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950" /db_xref="CDD:188637" misc_feature complement(1169569..1170420) /locus_tag="Alide_1102" /note="dihydrodipicolinate synthase; Region: dapA; TIGR00674" /db_xref="CDD:129757" misc_feature complement(order(1169620..1169622,1169626..1169628, 1169680..1169685,1170013..1170015,1170019..1170021, 1170109..1170117,1170184..1170186,1170190..1170192, 1170289..1170303)) /locus_tag="Alide_1102" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188637" misc_feature complement(order(1169863..1169865,1169869..1169871, 1169944..1169946,1170013..1170015,1170028..1170030, 1170295..1170300)) /locus_tag="Alide_1102" /note="active site" /db_xref="CDD:188637" misc_feature complement(1169944..1169946) /locus_tag="Alide_1102" /note="catalytic residue [active]" /db_xref="CDD:188637" gene complement(1170456..1170986) /locus_tag="Alide_1103" /db_xref="GeneID:10103137" CDS complement(1170456..1170986) /locus_tag="Alide_1103" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_0925 methyltransferase type 12" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_004125755.1" /db_xref="GI:319761818" /db_xref="GO:0008168" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10103137" /translation="MEASDWIQRWSHLVPAGGTVLDVACGAGRHMRWFSERNHPVTGV DKALEAIEAVAPLGEAVQADIENGPWPLPGRRFDCVVVTNYLWRPLLPTIVDSVAPGG VLLYETFAQGNETVGRPARPEFLLRPSELLRACEGLRIVAYEDGFLDAPARFVQRIAA VREPPSPLVRMPLYRF" misc_feature complement(1170660..1170941) /locus_tag="Alide_1103" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1170986..1171114) /locus_tag="Alide_1104" /db_xref="GeneID:10103138" CDS complement(1170986..1171114) /locus_tag="Alide_1104" /inference="similar to AA sequence:KEGG:Ajs_1012" /note="KEGG: ajs:Ajs_1012 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125756.1" /db_xref="GI:319761819" /db_xref="GeneID:10103138" /translation="MRAAHKRWIAAALALAVLLAVFALYLQPEFMRTLADQIWACF" sig_peptide complement(1171034..1171114) /locus_tag="Alide_1104" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.512 at residue 27" gene complement(1171119..1172336) /locus_tag="Alide_1105" /db_xref="GeneID:10103139" CDS complement(1171119..1172336) /locus_tag="Alide_1105" /inference="protein motif:PFAM:PF07690" /note="KEGG: dia:Dtpsy_0927 major facilitator superfamily MFS_1; manually curated; PFAM: major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004125757.1" /db_xref="GI:319761820" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10103139" /translation="MHDTTRKLSMAQVLICGATIVTLSMGIRHGFGMWLQPITQDMGW TRQTFALAMAIQNLSWGVFGIFGGMLSDRFGAFRVLILGALLYAMGLAGMALSPTPLL FSLTTGVLIGAAQAGTTYAVIYGVLGRQISAERRSWAMGVAAAAGSFGQFLMMPLEGQ LILRLGWQNALLVLSAMVLLIVPLAFGLREPGFHGSAPIRRTQSARHAFAEALRYKSF LLLTAGYFVCGFQVVFIGVHMPSYLRDHGLSPQVASYALALIGLFNVFGTYISGTLGQ RMQKRHILAFIYFARAVVISVFLLVPLSPLSVYVFSAVIGALWLSTVPPTNAAVAQIF GVQHLSMLSGFVFFSHQIGSFLGVWLGGYLYDTTGSYDIVWYMAIVLGVAAGLINLPV REGAIARATPQAA" misc_feature complement(1171173..1172246) /locus_tag="Alide_1105" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(1171266..1172246) /locus_tag="Alide_1105" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature complement(order(1171275..1171277,1171284..1171289, 1171296..1171301,1171308..1171313,1171344..1171346, 1171353..1171358,1171368..1171370,1171377..1171382, 1171389..1171391,1171533..1171535,1171545..1171547, 1171554..1171556,1171566..1171568,1171578..1171580, 1171617..1171619,1171626..1171631,1171638..1171643, 1171650..1171652,1171884..1171886,1171902..1171907, 1171914..1171919,1171953..1171955,1171962..1171967, 1171974..1171979,1171989..1171994,1172133..1172138, 1172142..1172147,1172157..1172159,1172166..1172171, 1172178..1172180,1172229..1172234,1172238..1172246)) /locus_tag="Alide_1105" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 1172432..1174408 /locus_tag="Alide_1106" /db_xref="GeneID:10103140" CDS 1172432..1174408 /locus_tag="Alide_1106" /EC_number="5.99.1.3" /inference="protein motif:PRIAM:5.99.1.3" /note="PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein; KEGG: dia:Dtpsy_0928 DNA topoisomerase IV subunit B; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein" /codon_start=1 /transl_table=11 /product="DNA topoisomerase (ATP-hydrolyzing)" /protein_id="YP_004125758.1" /db_xref="GI:319761821" /db_xref="InterPro:IPR001241" /db_xref="InterPro:IPR002288" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR005737" /db_xref="InterPro:IPR013506" /db_xref="InterPro:IPR018522" /db_xref="GeneID:10103140" /translation="MAVKPSSASAYSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIVQE VLDNAADEALAGYGKKIKVTLHEDGSVSVEDDGRGIPFGLHPEEGAPVVELVFTRLHA GGKFDKGQGGAYSFSGGLHGVGVSVTNALSTRLEVSTHREGQIARLAFAAGDVAEPLL ARPLAAGERRQGTTVRVWPDAKYFESAQLPMGELTHLLRSKAVLMPGVSVSLVNEKTR DQQAWQYKGGLADYLAQSLPADPVIPLFSGEGFADAGHDSFAEGEGAAWAVAFTEEGS PVRESYVNLIPTSAGGTHDSGLRDGLFQAVKGFIELHALLPKGVKLLPEDVFARASYV LSAKVLDPQFQGQIKERLNSRDAVRLVSSFVRPALELWLNQHVDYGKRLAELAIKAAQ TRQRAGQKVEKKKGSGVAVLPGKLTDCESRDTAYNEVFLVEGDSAGGSAKMGRDKETQ AILPLRGKVLNTWEVERDLLFRNNEVHDISVAIGVDPHGPHDSPDLSGLRYGKVCILS DADVDGAHIQVLLLTLFFRHFPRLIEAGRIYVARPPLYRVDVPARGKKPAAKLYALDE GELEAILDKAAKDGVPREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGALDF AATEGLITKLMGKGEAASRRELMELHGDAVEVDI" misc_feature 1172441..1174402 /locus_tag="Alide_1106" /note="DNA topoisomerase IV subunit B; Reviewed; Region: PRK05559" /db_xref="CDD:180127" misc_feature 1172549..1172860 /locus_tag="Alide_1106" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1172561..1172563,1172573..1172575,1172582..1172584, 1172648..1172650,1172654..1172656,1172660..1172662, 1172666..1172671,1172795..1172806,1172840..1172842, 1172846..1172848) /locus_tag="Alide_1106" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1172573..1172575 /locus_tag="Alide_1106" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1172660..1172662,1172666..1172668,1172795..1172797, 1172801..1172803) /locus_tag="Alide_1106" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 1173110..1173640 /locus_tag="Alide_1106" /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are...; Region: TopoII_Trans_DNA_gyrase; cd00822" /db_xref="CDD:48467" misc_feature 1173281..1173283 /locus_tag="Alide_1106" /note="anchoring element; other site" /db_xref="CDD:48467" misc_feature order(1173452..1173454,1173461..1173466,1173470..1173472, 1173605..1173610,1173620..1173622,1173632..1173634) /locus_tag="Alide_1106" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48467" misc_feature order(1173470..1173472,1173476..1173478) /locus_tag="Alide_1106" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48467" misc_feature 1173713..1174060 /locus_tag="Alide_1106" /note="Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from...; Region: TOPRIM; cl00718" /db_xref="CDD:193916" misc_feature order(1173728..1173733,1173740..1173742,1173956..1173958, 1173962..1173964,1173968..1173970) /locus_tag="Alide_1106" /note="active site" /db_xref="CDD:173773" misc_feature order(1173728..1173730,1173956..1173958) /locus_tag="Alide_1106" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173773" misc_feature 1174178..1174375 /locus_tag="Alide_1106" /note="DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986" /db_xref="CDD:189792" gene 1174464..1176806 /locus_tag="Alide_1107" /db_xref="GeneID:10103141" CDS 1174464..1176806 /locus_tag="Alide_1107" /EC_number="5.99.1.3" /inference="protein motif:TFAM:TIGR01062" /note="SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; KEGG: ajs:Ajs_1016 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller" /codon_start=1 /transl_table=11 /product="DNA topoisomerase iv, a subunit" /protein_id="YP_004125759.1" /db_xref="GI:319761822" /db_xref="GO:0003677" /db_xref="GO:0003918" /db_xref="GO:0005524" /db_xref="InterPro:IPR000209" /db_xref="InterPro:IPR002205" /db_xref="InterPro:IPR005742" /db_xref="InterPro:IPR006691" /db_xref="GeneID:10103141" /translation="MSDQPVLDFSGADAGDALGLGGYAQRAYLEYALSVVKGRALPDV CDGLKPVQRRILYAMDRMGLSYSGNAPAKPVKSARVVGDVLGRFHPHGDQSAYDALVR LAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTKIAGLLLGEIDQGTVDFVPNY DGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREVADACVALVKNPRLSDEE LFALVPGPDYPGGGQIISSVADIQDAYRGGRGSLKVRARWKIEDLARGQWQMVVTELP PGVSAQKVLEEIEDITNPKVKAGKKALTQEQQQLKASMLAVLDGVRDESSKDAPVRIV FEPKTGRVPQQELVTALLGHTSLETSAPINLTMVGLDGRPVQKSLRQMLAEWVEFRQQ TITRRSQHRLAKVLDRIHILEGRQLVLLNIDEVIAIIRAADDPKAALMARFSLSERQA EDILEIRLRQLARLEAIKIEQELSELRKEQGQLEDILANPASLRRLMVREIEADAKQF ADARRTLIQEEKKVVAEVKVVDEPTTVVVSQKGWVRTRQGHGHAADSFAFKAGDGLYG TFECRTVDQLIVFGSNGRLYSVPVAQLPGGRGDGQPVTTLIELEPGTQIAHYFAGPVQ AQLLLAGSGGYGFVAQVEHMVSRNKGGKAFVALGEGETLCAPSHVAGTSASQPLAAAT HVCCASAGGRILTFDIGELKQMDKGGRGLMLIALEDKDSLAGAAAYTRSVRIAGVGRG GRQREEQLEIRSLNNARGTRGRKGKAADLGFKPAAVLRVE" misc_feature 1174530..1176782 /locus_tag="Alide_1107" /note="DNA topoisomerase IV subunit A; Validated; Region: PRK05561" /db_xref="CDD:180129" misc_feature 1174575..1175972 /locus_tag="Alide_1107" /note="DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in...; Region: TOP4c; cd00187" /db_xref="CDD:29149" misc_feature order(1174575..1174655,1174680..1174829,1174833..1174889, 1174893..1174964,1174971..1174973) /locus_tag="Alide_1107" /note="CAP-like domain; other site" /db_xref="CDD:29149" misc_feature 1174860..1174862 /locus_tag="Alide_1107" /note="Active site [active]" /db_xref="CDD:29149" misc_feature order(1175721..1175729,1175736..1175747,1175769..1175774, 1175814..1175864) /locus_tag="Alide_1107" /note="primary dimer interface [polypeptide binding]; other site" /db_xref="CDD:29149" gene complement(1176914..1177372) /locus_tag="Alide_1108" /db_xref="GeneID:10103142" CDS complement(1176914..1177372) /locus_tag="Alide_1108" /inference="protein motif:PFAM:PF01042" /note="PFAM: Endoribonuclease L-PSP; KEGG: ajs:Ajs_1018 endoribonuclease L-PSP" /codon_start=1 /transl_table=11 /product="endoribonuclease l-psp" /protein_id="YP_004125760.1" /db_xref="GI:319761823" /db_xref="InterPro:IPR006175" /db_xref="GeneID:10103142" /translation="MSVYDKLKELDITLPPLAVPAAAYVPYVQTGNLLFLSGHIARKD GKPWAAQFGKDITTEEGKAAARAVAIDLLGTLHAATGGDLNRVQRIVKVMSLVNSTGD FTEQHLVTNGASELLGEVFGDKGKHARSAFGVAQIPLGACVEIELMAEID" misc_feature complement(1176923..1177288) /locus_tag="Alide_1108" /note="This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_1; cd02199" /db_xref="CDD:100006" misc_feature complement(order(1176929..1176931,1176935..1176937, 1176941..1176943,1176971..1176997,1177019..1177021, 1177031..1177033,1177040..1177042,1177085..1177087, 1177091..1177093,1177097..1177102,1177106..1177108, 1177259..1177264,1177268..1177270,1177274..1177276, 1177283..1177285)) /locus_tag="Alide_1108" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100006" misc_feature complement(order(1176941..1176943,1176986..1176988, 1177040..1177042,1177052..1177054)) /locus_tag="Alide_1108" /note="putative active site [active]" /db_xref="CDD:100006" gene 1177478..1179877 /locus_tag="Alide_1109" /db_xref="GeneID:10103143" CDS 1177478..1179877 /locus_tag="Alide_1109" /inference="protein motif:TFAM:TIGR00361" /note="KEGG: dia:Dtpsy_0933 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein" /codon_start=1 /transl_table=11 /product="DNA internalization-related competence protein comec/rec2" /protein_id="YP_004125761.1" /db_xref="GI:319761824" /db_xref="InterPro:IPR004477" /db_xref="InterPro:IPR004797" /db_xref="GeneID:10103143" /translation="MLGAVLGVALQLQQAQLWPWPVYAGTLALALLGAGLAWKAPRPG AFAWLAAALLTWSVCGLRAAAFLAGALAPQLEGRDLRVTGVVAAMPQPRETGLRLRLE VESALLDGAPVRVPGLIDLSWYAGAPGGGAQDEARPPPALQAGERWRLTVRLKAPHGG RNPHGFDYELWLWEQGVQATGYVRTGARLDALHGPPERLGATWRHPVEQLRQRVRDAI VRGLAPGADAAGQRAMGVVAALVTGDQRAIEREDWDLFRATGVAHLMSISGLHITLFA WLAAALVQRAWRRSRRLCLALPAPTAALAGGVLLAGAYALFSGWGVPAQRTVCMLATV ALLRLSGRRWPWPQVWLLACAVVLAADPWALLQPGFWLSFVAVAVLFATDMGAAGARP TGAAGRFLGLLREQWVVTLALTPLTLLLFGQVSIVGLLANLLAIPWTTLVVTPLALLG VLWAPLWQAAAWCVQWLTVLLQWLAAWPWAQVSLPMAPQWAGALAVAGGVLLALRLPW GVRALGLPLLLPALWWQPPRPAPGQFELLAADVGQGQAVLVRTARHALLYDAGPRYHQ DSDAGERVLAPLLRALGERLDLLVLSHGDTDHTGGAAAVLARQPQARVLGSIGAGHPL QSLRPIEPCLAGRRWEWDGVRFEVLHPPRGVDATAPGPRAPRPNAHSCVLRISAGAPP GASALLAGDVERAQEQSLVAGGALLAADVLLVPHHGSKTSSSEDFVDAVRPRLALVQA GYRNRFGHPAPEVAARYQERGIALVQTTRCGAARWSSAAPQEPRCEREAARRYWHHAV P" misc_feature 1177892..1179790 /locus_tag="Alide_1109" /note="DNA internalization-related competence protein ComEC/Rec2; Region: ComEC_Rec2; TIGR00361" /db_xref="CDD:161839" misc_feature 1178195..1178947 /locus_tag="Alide_1109" /note="Competence protein; Region: Competence; cl00471" /db_xref="CDD:193833" misc_feature 1179095..1179856 /locus_tag="Alide_1109" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 1180115..1181551 /locus_tag="Alide_1110" /db_xref="GeneID:10103144" CDS 1180115..1181551 /locus_tag="Alide_1110" /inference="protein motif:PFAM:PF00171" /note="PFAM: Aldehyde Dehydrogenase; KEGG: dia:Dtpsy_0944 aldehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="YP_004125762.1" /db_xref="GI:319761825" /db_xref="GO:0016491" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR016160" /db_xref="GeneID:10103144" /translation="MRYPDTRLFIAGQWQDAADGKTLPVVNPATGEEIGRVAHAGIAD LDRALAAAQKGFEAWRDVPAIERARAMRRAAALMRERADAIAAILTQEQGKPLAEARV EAMAAADIIEWFADEGMRVYGRIVPSRNLAVRQMVVKDPVGVVAAFTPWNFPINQVVR KLGAALAAGCSVLVKAPEETPASPAELIRAFADAGLPAGVVGLVYGNPAEISNYLIPH PIVRKVTFTGSTPVGKMLAGLAGQHMKRVTMELGGHAPVIVCEDADIELAVKAAGGAK FRNAGQVCIAPTRFLVHEDVRADFVAALARHAQGLKVGDGLAEGTQMGPLANPRRVAA MKELLGDAVQRGATVRAGGERIGEVGNFFAPTVLDNVPTSARIFNEEPFGPVASVRGF TKLEDAIAESNRLPYGLAGYAFTRSLKNAHLLSQRVEVGMLWINQPATPSAELPFGGI KDSGYGSEGGPEALEACLNTRAISITNV" misc_feature 1180154..1181533 /locus_tag="Alide_1110" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature 1180187..1181539 /locus_tag="Alide_1110" /note="Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103" /db_xref="CDD:143421" misc_feature order(1180301..1180303,1180328..1180330,1180451..1180453, 1180460..1180465,1180469..1180495,1180511..1180519, 1180532..1180534,1180778..1180780,1180814..1180816, 1180826..1180828,1180835..1180837,1181006..1181008, 1181018..1181020,1181156..1181158,1181360..1181362, 1181366..1181371,1181381..1181383,1181387..1181389, 1181396..1181398,1181402..1181422,1181438..1181440, 1181447..1181452,1181468..1181470,1181483..1181485, 1181519..1181539) /locus_tag="Alide_1110" /note="tetramerization interface [polypeptide binding]; other site" /db_xref="CDD:143421" misc_feature order(1180556..1180570,1180592..1180594,1180637..1180639, 1180643..1180648,1180790..1180801,1180808..1180810, 1180817..1180822,1180862..1180870,1180964..1180966, 1181255..1181257,1181261..1181263,1181339..1181341, 1181453..1181455) /locus_tag="Alide_1110" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143421" misc_feature order(1180568..1180570,1180862..1180864,1180955..1180957, 1180964..1180966) /locus_tag="Alide_1110" /note="catalytic residues [active]" /db_xref="CDD:143421" gene complement(1181757..1182656) /locus_tag="Alide_1111" /db_xref="GeneID:10103145" CDS complement(1181757..1182656) /locus_tag="Alide_1111" /inference="protein motif:PFAM:PF00581" /note="KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="YP_004125763.1" /db_xref="GI:319761826" /db_xref="InterPro:IPR001763" /db_xref="GeneID:10103145" /translation="MPFTTLISVSELQALVRSSQPLMVFDCSFDLAQPSLGAAQYREA HLPGALHTDLDKNLSARHGAPGHGGTLTASAADEPASGGRHPLPGRERFATWLSSIGF SNDMQAVVYDRNGANYCGRLWWMLKWAGHDAVAVLDGGLQAWQAAGGKLASGEGPARF QSNFELRAPLRRLVGVQEVLEHLGRPHQTLVDARATPRFRGEVEPLDPVAGHIPGALN RPFGLNLGPDGCFKSPGQLRAEFQDLLGGRPPASVVHQCGSGVSAVPNLLAMEIAGLG PTALFAGSWSEWCSDPARPVERG" misc_feature complement(1181760..1182656) /locus_tag="Alide_1111" /note="Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Region: SseA; COG2897" /db_xref="CDD:32722" misc_feature complement(1182213..1182641) /locus_tag="Alide_1111" /note="Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but...; Region: TST_Repeat_1; cd01448" /db_xref="CDD:29079" misc_feature complement(1182321..1182323) /locus_tag="Alide_1111" /note="active site residue [active]" /db_xref="CDD:29079" misc_feature complement(1181793..1182137) /locus_tag="Alide_1111" /note="Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue; Region: TST_Repeat_2; cd01449" /db_xref="CDD:29080" misc_feature complement(1181886..1181888) /locus_tag="Alide_1111" /note="active site residue [active]" /db_xref="CDD:29080" gene complement(1182710..1183621) /locus_tag="Alide_1112" /db_xref="GeneID:10103146" CDS complement(1182710..1183621) /locus_tag="Alide_1112" /inference="similar to AA sequence:KEGG:Dtpsy_0952" /note="KEGG: dia:Dtpsy_0952 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004125764.1" /db_xref="GI:319761827" /db_xref="GeneID:10103146" /translation="MQALWMVLAAFLFASMGVCVKFASAYFNSAEMVFYRGIIGMAVL WWLARSQQVALATRYPGMHAWRSLIGVLSISAWFYAIAHLPLGTSMTLNYMSSVWVAA FIVGGALFTWRPSSRQPRPPLQVPLLLTVLTGFAGVVLMLRPSLGDSQGFAALIGLGS GLGAALAYMQVVALSRLGEPETRTVFYFATGSAVAGAAAMAVTGMSSWPGWPALWLLP LGMLAALGQLCMTRAYSRALTPRGTLVVANLQYSGIVFAGIYGVLLFGDQLPLAAWAG MAIIVASGIAATVLRTQAAPDTPAEEH" gene complement(1183715..1184854) /locus_tag="Alide_1113" /db_xref="GeneID:10103147" CDS complement(1183715..1184854) /locus_tag="Alide_1113" /inference="protein motif:PFAM:PF00355" /note="PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain-containing protein" /codon_start=1 /transl_table=11 /product="rieske (2fe-2S) iron-sulfur domain protein" /protein_id="YP_004125765.1" /db_xref="GI:319761828" /db_xref="GO:0016491" /db_xref="InterPro:IPR017941" /db_xref="GeneID:10103147" /translation="MSDLSLRLQQAASQLPVSSYFDEALLQRELETIFRQGPRYVGHA LSVPEIGDYYALPQESEGRALVRGANGRVELVSNVCRHRQAVMLKGRGNLQAQGKGHA GGNIVCPIHRWTYSSSGELLGAPHFAHDPCLNLNNYQLREWNGLLFEDNGRDIAADLA GMGPQHDLSFEGYVLDHVELHECSYNWKTFIEVYLEDYHVGPFHPGLGNFVTCDDLRW EFAREYSVQTVGVAPTFGKPGSDVYRKWHEVLLKYQGGKLPERGAIWLTYYPHIMVEW YPHVLTVSTLHPIGVDRTLNMVEFYYPEEIVAFEREFVEAQRAAYMETCIEDDEIAER MDAGRKALMQRGDNEVGPYQSPMEDGMQHFHEWYRERLGDAVPKA" misc_feature complement(1183718..1184809) /locus_tag="Alide_1113" /note="Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638" /db_xref="CDD:34257" misc_feature complement(1184411..1184737) /locus_tag="Alide_1113" /note="Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469" /db_xref="CDD:58539" misc_feature complement(order(1184516..1184518,1184522..1184524, 1184531..1184533,1184606..1184611,1184615..1184617)) /locus_tag="Alide_1113" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:58539" misc_feature complement(1183736..1184326) /locus_tag="Alide_1113" /note="C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases; Region: RHO_alpha_C; cd00680" /db_xref="CDD:176852" misc_feature complement(order(1183751..1183753,1183763..1183765, 1183772..1183774,1183784..1183795,1183841..1183855, 1183859..1183867,1183976..1183981,1184246..1184248, 1184258..1184263,1184267..1184269,1184276..1184281, 1184288..1184290,1184300..1184305)) /locus_tag="Alide_1113" /note="alpha subunit interface [polypeptide binding]; other site" /db_xref="CDD:176852" misc_feature complement(order(1183871..1183873,1183880..1183885, 1183913..1183915,1184003..1184005,1184009..1184011, 1184030..1184032,1184036..1184038,1184060..1184062, 1184066..1184071,1184243..1184245,1184255..1184260, 1184264..1184269,1184273..1184278)) /locus_tag="Alide_1113" /note="active site" /db_xref="CDD:176852" misc_feature complement(order(1183880..1183885,1183913..1183915, 1184003..1184005,1184009..1184011,1184030..1184032, 1184036..1184038,1184060..1184062,1184066..1184071, 1184243..1184245,1184255..1184260,1184264..1184269, 1184273..1184278)) /locus_tag="Alide_1113" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176852" misc_feature complement(order(1183871..1183873,1184243..1184245, 1184258..1184260)) /locus_tag="Alide_1113" /note="Fe binding site [ion binding]; other site" /db_xref="CDD:176852" gene 1185130..1185372 /locus_tag="Alide_1114" /db_xref="GeneID:10103148" CDS 1185130..1185372 /locus_tag="Alide_1114" /inference="protein motif:TFAM:TIGR01280" /note="KEGG: ajs:Ajs_1036 exodeoxyribonuclease VII, small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease vii, small subunit" /protein_id="YP_004125766.1" /db_xref="GI:319761829" /db_xref="GO:0008855" /db_xref="InterPro:IPR003761" /db_xref="GeneID:10103148" /translation="MPKAPAAPAPQPDPASYEAALEELEQLVARIESGQLPLEQMLAG YQRGAALLNFCRARLEAVQDQIKVLDEGALQPWTQE" misc_feature 1185175..1185357 /locus_tag="Alide_1114" /note="Exonuclease VII small subunit; Region: Exonuc_VII_S; cl00750" /db_xref="CDD:193926" gene 1185372..1186265 /locus_tag="Alide_1115" /db_xref="GeneID:10103149" CDS 1185372..1186265 /locus_tag="Alide_1115" /inference="protein motif:PFAM:PF00348" /note="PFAM: Polyprenyl synthetase; KEGG: dia:Dtpsy_0955 polyprenyl synthetase" /codon_start=1 /transl_table=11 /product="polyprenyl synthetase" /protein_id="YP_004125767.1" /db_xref="GI:319761830" /db_xref="InterPro:IPR000092" /db_xref="GeneID:10103149" /translation="MPTSDYDFARWMRGQLAQVEAGLSLWVRADAPAGLGAAMRYAVL DGGKRLRPLLVLAACEAVGGLGQAALRAACAVELIHAYSLVHDDMPCMDNDVLRRGKP TVHVRFGQAQALLAGDALQALAFELLTPEDGVPPAMQARLCRLLAQAAGADGMAGGQA IDLASVGQQLTQDQLRHMHRLKTGALLRASVVMGAACGEPAGVAEQALAQYGAAIGLA FQVVDDVLDVTQDSATLGKTAGKDAASDKPTYVSLMGLDAARDHAEALRAEAHAALAA SGLADTRALAELADMVVRRSH" misc_feature 1185459..1186256 /locus_tag="Alide_1115" /note="Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685" /db_xref="CDD:173833" misc_feature order(1185606..1185608,1185615..1185623,1185627..1185635, 1185645..1185650,1185663..1185668,1185846..1185848, 1185855..1185857,1185915..1185920,1185927..1185929, 1186038..1186043,1186050..1186052,1186080..1186082, 1186095..1186097,1186110..1186112) /locus_tag="Alide_1115" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature order(1185615..1185638,1185645..1185650) /locus_tag="Alide_1115" /note="chain length determination region; other site" /db_xref="CDD:173833" misc_feature order(1185630..1185635,1185648..1185650,1185663..1185668, 1185855..1185857,1185915..1185917,1186038..1186043, 1186050..1186052,1186080..1186082,1186095..1186097, 1186110..1186112) /locus_tag="Alide_1115" /note="substrate-Mg2+ binding site; other site" /db_xref="CDD:173833" misc_feature order(1185630..1185635,1185648..1185650,1185663..1185668, 1185915..1185917,1186038..1186043) /locus_tag="Alide_1115" /note="catalytic residues [active]" /db_xref="CDD:173833" misc_feature order(1185630..1185635,1185648..1185650,1185663..1185668, 1185855..1185857,1185915..1185917) /locus_tag="Alide_1115" /note="aspartate-rich region 1; other site" /db_xref="CDD:173833" misc_feature order(1185654..1185698,1186059..1186064,1186080..1186097, 1186104..1186118) /locus_tag="Alide_1115" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature order(1186038..1186043,1186050..1186052,1186080..1186082, 1186095..1186097,1186110..1186112) /locus_tag="Alide_1115" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene 1186340..1188232 /locus_tag="Alide_1116" /db_xref="GeneID:10103150" CDS 1186340..1188232 /locus_tag="Alide_1116" /inference="protein motif:TFAM:TIGR00204" /note="KEGG: dia:Dtpsy_0956 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; dehydrogenase E1 component; Transketolase domain-containing protein" /codon_start=1 /transl_table=11 /product="deoxyxylulose-5-phosphate synthase" /protein_id="YP_004125768.1" /db_xref="GI:319761831" /db_xref="GO:0008661" /db_xref="InterPro:IPR001017" /db_xref="InterPro:IPR005474" /db_xref="InterPro:IPR005475" /db_xref="InterPro:IPR005476" /db_xref="InterPro:IPR005477" /db_xref="InterPro:IPR020826" /db_xref="GeneID:10103150" /translation="MSTTNYPLLERVNDPADLRRLSRAELKSLAGELRAFVLESVSKT GGHLSSNLGTVELTVALHAVFDTPRDRLVWDVGHQTYPHKILTGRRERMGTLRQLGGL SGFPQRAESEYDTFGTAHSSTSISAALGMALAAKQKGEDRRAIAVIGDGAMTAGMAFE ALNNAGVADADLLVILNDNDMSISPPVGALNRYLAQLMSGQFYAKARDVGKSVLRNAP PLLELAKRLEQQAKGMVVPATLFEKFGFNYIGPIDGHDLDSLIPTLENIRSLKGPQFL HVVTKKGQGYKLAEADPVAYHGPGKFDPRVGLVKPATPPKQTFTQVFGQWLCDMAAKD QRLVGITPAMREGSGMVEFHQRFPGRYYDVGIAEQHAVTFAAGMACEGVKPVVAIYST FLQRAYDQLIHDVALQNLPVVFALDRAGLVGADGATHAGAYDIAFVRCIPHMSMACPA DERECRQLLTTAYEQDHPVAVRYPRGAGVGVAPLAGLEGLPFGKGEVRRQGRRIAILA FGTLLYPALQAAEKLDATVVNMRWAKPLDTELLLRVAAEHEALVTVEEGCIMGGAGSA VGEALNAAGVLRPLLQLGLPDAFIEHGDPARLLALQGLDAEGMERAIAQRFCARPAAV PSRAVA" misc_feature 1186346..1188190 /locus_tag="Alide_1116" /note="1-deoxy-D-xylulose-5-phosphate synthase; Provisional; Region: PRK05444" /db_xref="CDD:180086" misc_feature 1186472..1187197 /locus_tag="Alide_1116" /note="TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS...; Region: TPP_DXS; cd02007" /db_xref="CDD:73294" misc_feature order(1186700..1186702,1186784..1186795,1186874..1186876, 1186880..1186882) /locus_tag="Alide_1116" /note="TPP-binding site; other site" /db_xref="CDD:73294" misc_feature 1187300..1187764 /locus_tag="Alide_1116" /note="Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033" /db_xref="CDD:132916" misc_feature order(1187342..1187344,1187348..1187350,1187366..1187368, 1187417..1187419,1187426..1187428,1187432..1187449, 1187456..1187461,1187465..1187473,1187525..1187527, 1187534..1187539,1187612..1187614,1187621..1187623, 1187669..1187674,1187735..1187737) /locus_tag="Alide_1116" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature order(1187366..1187368,1187426..1187428,1187435..1187443, 1187522..1187527,1187531..1187533,1187612..1187614, 1187618..1187620,1187645..1187650,1187654..1187659, 1187663..1187665) /locus_tag="Alide_1116" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature order(1187435..1187437,1187441..1187443,1187516..1187518, 1187525..1187527) /locus_tag="Alide_1116" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132916" misc_feature 1187816..1188166 /locus_tag="Alide_1116" /note="Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780" /db_xref="CDD:145764" gene 1188360..1189442 /locus_tag="Alide_1117" /db_xref="GeneID:10103151" CDS 1188360..1189442 /locus_tag="Alide_1117" /inference="protein motif:PFAM:PF03480" /note="PFAM: Extracellular solute-binding protein, family 7; KEGG: ctt:CtCNB1_3520 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein, family 7" /protein_id="YP_004125769.1" /db_xref="GI:319761832" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR018389" /db_xref="GeneID:10103151" /translation="MDRRSLIKNAGLAGVLAAGVAPAVHAQAAVRWRMATSFPKSLET LHGAGVKFAETVKALSGGKFEVSVHAAGELMPAFGIVDALSEDTIEMGLTAAYYYTGK DPAFAFSCAVPFGLTAGQNQAWKEHGNGRKLLNELFAKYNFQTLSALNTGTQMGGWYR KEIKSPADFKGLKMRLGGGVFGESMAKLGVVAQNMPAGEVYQALEKGTLDAVEFVGPY DDEKLGYNKVAKYYYYGAWWEGGADLEFFVNNKALAKLSPENQAIVKAAAAVANQDGT SKYLMLNPVSLKRMVGSGTQLKPFPKAVVEAGFKAAQEVYAEHSAKEPAFKKIYEDLR AFQRDQILWSRISELPFLQTMASVKI" sig_peptide 1188360..1188440 /locus_tag="Alide_1117" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.800 at residue 27" misc_feature 1188450..1189424 /locus_tag="Alide_1117" /note="Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl00710" /db_xref="CDD:153950" gene complement(1189522..1194219) /locus_tag="Alide_1118" /db_xref="GeneID:10103152" CDS complement(1189522..1194219) /locus_tag="Alide_1118" /inference="protein motif:PFAM:PF08494" /note="KEGG: gdi:GDI_2676 DEAD/H associated; region: DEAD_assoc; pfam08494; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein" /codon_start=1 /transl_table=11 /product="dead/h associated domain protein" /protein_id="YP_004125770.1" /db_xref="GI:319761833" /db_xref="GO:0003676" /db_xref="GO:0004386" /db_xref="GO:0005524" /db_xref="GO:0008026" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR013701" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:10103152" /translation="MARTGTGSRQRAAQALEQFTPATRAWFASAFGAPTPVQEAAWDV IRGGECALVIAPTGSGKTLAAFLHAIDRLFAEKDGATADAAPGAATRVLYISPIKALG ADVQRNLRLPLDGVGAQRVRRGDPAVEITVGMRTGDTPSAQRAALLRRPPDILITTPE SLYLMLTSKARETLRDVRTVIVDEVHAVACTKRGSHMALSLERLDALLDRPAQRVGLS ATVRPVDRVAAFLGGARPTTVVNPPAGRRLELRIVVPVRDMADIPARDESGTMGSIWP HVEASILEQVLSRRSTIVFANSRGAAEKLTARLNALYAERMQIPRQGDAPAAVQYASS SGGTGNRTDGAAPLIARSHHGSVSKEQRSDIEDALKSGALRCVVATSSLELGIDMGLV DLVIQVAAPPSVASALQRVGRAGHQVGGTSRGLVYPRTRRELVDAAVTVRRMLAGELE AIEPPRNPLDVLAQQTVAAVAMDAMHVDDWYALVRRADPFRALPRSAFDATLDMLAGR YPSDEFAEFRPRLVWDRIGGQLGARPGAKSLAVISGGTIPDRGMFTVMLPEGEEKAGA RRVGELDEEMVYESRVNDIITLGATSWRIQQITHDQVIVVPAPGRSARLPFWRGEGLG RPAELGEAIGAFLREVDAAPRDAHAALEAAGLDANAIANILQLAAQQREATGALPTDR TLVIERCRDEGGDWRVMLHSPYGQRVHAPWALAIAQRIRQRLNVDPSVVAGDDGIIAR IPDMEGRTPGAELFLFDAEAVQRIVAEAVGASSLFAARFRECAARALLLPRRSPGKRS PLWQQRLRAGQLLEIARGYPDFPILIETARECLQDVYDLPALGALMRRLQDGGIRMLE VTTEVPSPFAADLLFGYVAEFMYEGDAPLAERRASVLSLDSSLLADLLGQVDMGEILD PVVVEQAGLELQRIAVQRRASGMEGVADLLRELGPLAPDAIVQRTAQQDPAAVAVWLS GLETAHRAMRATVAGEERWAAIEDAARLRDALGARLPAGVPKAFREPVPDPLRDLVAR YARTHGPFTTSEVAQHFGLGAAVADEALERLQAQGKVLKGSFGVERHLRAQDAHRLAQ GPVARHEWVAEDVLRRLRQRSLQAAREAAKPAAQHAYVQLVLERQALVPELTACAAND APPFAQGTLEGTAGVARVLEQLAGLPLPASQWESLVLPARVRDYRPFMLDELLASGEA VWAGHGAAGDGDGLVSLHLSEMAADTLAPQPEAGGDAPTGLRQAILDVLGRGGAFFAR QIAQHVDADPAQLHAALWQLAWSGYVTSDGWQPLRALTSPHGSRRAETVRPQRRSWRM RGRPQPPDAPEHAGHSGIALGDLTLAGRWSLVQRPASSDTERAFALAEGLLDRHGIVT RSAVMAENVPGGLPALRPVLHAMEDAGRVLRGRFVDGLGAAQFADKAAIERLRELTQL QTAQPLAVALSVLDPANPFGAALAWPAHRLGIRPQRRSGGIVVLCGGRLALYLTPGRR QLLTWLDAERADERTALAHALQALVHALEREKRGRFTIETVDEQPVGRYPLLGLLREA GFSRVPKGLSWYG" misc_feature complement(1193560..1194066) /locus_tag="Alide_1118" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature complement(1189531..1194063) /locus_tag="Alide_1118" /note="putative ATP-dependent helicase Lhr; Provisional; Region: PRK09751" /db_xref="CDD:137505" misc_feature complement(1194034..1194048) /locus_tag="Alide_1118" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature complement(1193662..1193673) /locus_tag="Alide_1118" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature complement(1192975..>1193160) /locus_tag="Alide_1118" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature complement(order(1193074..1193082,1193155..1193160)) /locus_tag="Alide_1118" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(order(1192981..1192983,1192993..1192995, 1193056..1193058)) /locus_tag="Alide_1118" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(1191619..1192191) /locus_tag="Alide_1118" /note="DEAD/H associated; Region: DEAD_assoc; pfam08494" /db_xref="CDD:149517" gene complement(1194354..1196180) /locus_tag="Alide_1119" /db_xref="GeneID:10103153" CDS complement(1194354..1196180) /locus_tag="Alide_1119" /inference="protein motif:TFAM:TIGR00786" /note="KEGG: dia:Dtpsy_0958 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit" /codon_start=1 /transl_table=11 /product="trap dicarboxylate transporter, dctm subunit" /protein_id="YP_004125771.1" /db_xref="GI:319761834" /db_xref="InterPro:IPR004681" /db_xref="InterPro:IPR010656" /db_xref="GeneID:10103153" /translation="MEFIAANFAPLMFGGLLCFLILGFPVAFSLGACGLFFGLLGIEL GVFPASTLAWLPQRLIGIMANETLLAVPFFTLMGLILERSGMAEDLLDSVGQVFGPLR GGLALAVILVGAMLAATTGVVAASVISMGLISLPIMLRYGYDRSLASGVIAASGTLAQ IIPPSLVLIVLADQLGKSVGDMYKGAFVPGFALVGLYVLWVIALAIFKPKMAPALPPE ARTLREPNGSAGYTSLALLALLSTAVAVVLAQNMEAVHTWWQGELVESVPTDEKIVVA MCGGTFVAWLIALANRVTRLGLLSRLAERVTFVLIPPLLLIFLVLGTIFLGVATPTEG GAMGAMGAIVMAASRGRLNMSLLKQALATTTRLSSFVMFILIGATFFSMVFQAADGPV WVEHLLAQLPGGQVGFLVFVNIMIFVLAFFLDFFELSFIVVPLLAPIADKMGIDLVWF GVLLAVNMQTSFMHPPFGFALFFLRSVAPDKPYVDHVTGKTIAPVTTMQIYKGAIPFL ILQLTMVAILITFPGLVTSQLDKKVDVDMNAVGTQMLENLNQQDLNFGEPGAEGAEEN KDDAGAAPAPELEPPASDAAATPGAAEADDPVKALEEAAGKR" misc_feature complement(<1195512..1196039) /locus_tag="Alide_1119" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" misc_feature complement(1194603..>1195199) /locus_tag="Alide_1119" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(1196199..1196813) /locus_tag="Alide_1120" /db_xref="GeneID:10103154" CDS complement(1196199..1196813) /locus_tag="Alide_1120" /inference="protein motif:PFAM:PF04290" /note="PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ctt:CtCNB1_3517 tripartite ATP-independent periplasmic protein" /codon_start=1 /transl_table=11 /product="tripartite ATP-independent periplasmic transporter dctq component" /protein_id="YP_004125772.1" /db_xref="GI:319761835" /db_xref="InterPro:IPR007387" /db_xref="GeneID:10103154" /translation="MQALLALSRAIDKLNAFVGKYSIWLIFAATVISAINAIVRKVFN YSSNGFLEVQWYLFAWSFLVAAGYTLLHREHVRIDVLNSRLPKKVQLWIEILGLIFFL TPICILVLWLCIPMLGEKFATGEMSPNPGGLLRWPVWAALPVGFVLLLLQGWSELIKC IAFLRGQGPDPTVKLGEKSAEEELAELLRQQAAAAARNPAPHAH" misc_feature complement(1196298..1196813) /locus_tag="Alide_1120" /note="Tripartite ATP-independent periplasmic transporters, DctQ component; Region: DctQ; cl01181" /db_xref="CDD:194064" gene complement(1197155..1198108) /locus_tag="Alide_1121" /db_xref="GeneID:10103155" CDS complement(1197155..1198108) /locus_tag="Alide_1121" /inference="protein motif:PFAM:PF00459" /note="PFAM: inositol monophosphatase; KEGG: dia:Dtpsy_0963 inositol-phosphate phosphatase" /codon_start=1 /transl_table=11 /product="inositol monophosphatase" /protein_id="YP_004125773.1" /db_xref="GI:319761836" /db_xref="GO:0004437" /db_xref="InterPro:IPR000760" /db_xref="InterPro:IPR020550" /db_xref="InterPro:IPR020583" /db_xref="GeneID:10103155" /translation="MSSNLHPMLNVAIKAARAAGAIINRAALDVEAVRISQKQINDFV TEVDQAAEQAIIETLLTAYPGHGILAEESGSQHGSKHSEYVWIIDPLDGTTNFIHGFP VYCVSIALAVKGKVEHAVVYDPTRNDLFTATRGRGAFLNDRRIRVSKRTRLGDCLIST GFPFRPGDNFKQYMAMMAELMPRTAGLRRPGAAALDLAYVAAGYCDGFFEAGLSIWDV AAGGLLVTEAGGLVGNFTGEADYLEQRECLAGAPRIYGQLVGLLGKYSKFASAGEKAS VRQAMADAPDAAADGQAPAADATTHPDSAAEDTQTRPGAAP" misc_feature complement(1197359..1198012) /locus_tag="Alide_1121" /note="IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be...; Region: IMPase; cd01639" /db_xref="CDD:30137" misc_feature complement(order(1197458..1197463,1197827..1197844, 1197893..1197898,1197965..1197967,1197983..1197985, 1197995..1197997)) /locus_tag="Alide_1121" /note="active site" /db_xref="CDD:30137" misc_feature complement(order(1197491..1197502,1197512..1197514, 1197536..1197556,1197566..1197568,1197575..1197580, 1197587..1197589,1197596..1197601,1197623..1197628, 1197632..1197634,1197638..1197646,1197800..1197817, 1197821..1197826,1197980..1197982,1197986..1197988)) /locus_tag="Alide_1121" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:30137" gene 1198238..1199050 /locus_tag="Alide_1122" /db_xref="GeneID:10103156" CDS 1198238..1199050 /locus_tag="Alide_1122" /inference="protein motif:TFAM:TIGR00050" /note="KEGG: ajs:Ajs_1046 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU)" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, trmh family, group 1" /protein_id="YP_004125774.1" /db_xref="GI:319761837" /db_xref="GO:0008173" /db_xref="InterPro:IPR001537" /db_xref="InterPro:IPR004384" /db_xref="GeneID:10103156" /translation="MPAAHGAPAFMKTRFILIQTSHAGNVGAAARAMKTMGFDDLVLV APRWPNVLRKEETIQRASGALDVLENARIVATLDEALDGISHLCATAMTPRDFGPPTR TPRTHFDSLLKNQLPALDGRALEADSAMNHGPEAGVAFLFGSERFGMANEDVYRCHVA LSIPTNPGFGSLNLGAAVQVIAYEWRQALGGFGVPESAPQGERADAAQLAGMLAHWEQ ALAAIGFLDPAAPKKLMPRLNQLFNRAQLTQEEIHILRGVAKSMLQAARPNR" misc_feature 1198262..1199038 /locus_tag="Alide_1122" /note="rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: LasT; COG0565" /db_xref="CDD:30911" misc_feature 1198277..1198786 /locus_tag="Alide_1122" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene 1199088..1199879 /locus_tag="Alide_1123" /db_xref="GeneID:10103157" CDS 1199088..1199879 /locus_tag="Alide_1123" /inference="protein motif:TFAM:TIGR01172" /note="TIGRFAM: serine O-acetyltransferase; KEGG: ajs:Ajs_1047 serine O-acetyltransferase" /codon_start=1 /transl_table=11 /product="serine o-acetyltransferase" /protein_id="YP_004125775.1" /db_xref="GI:319761838" /db_xref="GO:0009001" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR005881" /db_xref="InterPro:IPR019809" /db_xref="GeneID:10103157" /translation="MLARLRSDIQCILDRDPAARSRFEVVTCYPGLHAIWLHLPAHWC WMHGLKWLGRFISHLARWFTGIEIHPGAVIGERVFIDHGMGVVIGETAVVGDGCTIYH GVTLGGTSLYKGAKRHPTLGRDVVVAAGAKVLGGFEVGDGAKIGSNAVVIKPVPAGAT AVGIPARIIPSREGHSADVTESHKPEGTTFSAYGVTAQQDDPLTQAMRGLIDSAGAQE HQITLLWQAIEKLSQSTPQGKDCVPCDAALSEQFQAAKLNDIIGK" misc_feature 1199100..1199588 /locus_tag="Alide_1123" /note="serine O-acetyltransferase; Region: cysE; TIGR01172" /db_xref="CDD:188118" misc_feature 1199277..1199582 /locus_tag="Alide_1123" /note="Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-...; Region: LbH_SAT; cd03354" /db_xref="CDD:100045" misc_feature order(1199280..1199282,1199286..1199288,1199331..1199333, 1199436..1199438,1199526..1199528,1199535..1199537, 1199541..1199543) /locus_tag="Alide_1123" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100045" misc_feature order(1199328..1199333,1199388..1199393,1199409..1199414, 1199436..1199441,1199472..1199474,1199517..1199519, 1199523..1199528,1199535..1199537,1199541..1199543, 1199565..1199567,1199580..1199582) /locus_tag="Alide_1123" /note="active site" /db_xref="CDD:100045" misc_feature order(1199328..1199333,1199409..1199411,1199436..1199441) /locus_tag="Alide_1123" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100045" misc_feature order(1199388..1199393,1199409..1199414,1199472..1199474, 1199517..1199519,1199523..1199528,1199535..1199537, 1199541..1199543,1199565..1199567,1199580..1199582) /locus_tag="Alide_1123" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100045" gene 1199939..1200601 /locus_tag="Alide_1124" /db_xref="GeneID:10103158" CDS 1199939..1200601 /locus_tag="Alide_1124" /inference="protein motif:PFAM:PF00881" /note="PFAM: nitroreductase; KEGG: dia:Dtpsy_0966 nitroreductase" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_004125776.1" /db_xref="GI:319761839" /db_xref="GO:0016491" /db_xref="InterPro:IPR000415" /db_xref="GeneID:10103158" /translation="MDVTQALRMRRSVRAFLPDAPPAKLVQTVLQEAAQAASGGNLQP WRVLALTGEPLRQVLAAVAQAQAEDGPANQSYPQGLWEPYRTRRFSNGEDLYRAIGIP REDKAARLEQLAKNAEFFGAPVGIFVCVDERMGLPQWADLGIYLQSLMLLAVHHGLAT CAQGFWRRYAGTLQRQLALPEPYRVACGVALGYEDEAAPINALRSTRAPWAEWGELRG FA" misc_feature 1199945..1200577 /locus_tag="Alide_1124" /note="Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a...; Region: Nitroreductase; cd02136" /db_xref="CDD:73304" misc_feature order(1199966..1199968,1199972..1199974,1199978..1199980, 1200056..1200058,1200428..1200433) /locus_tag="Alide_1124" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:73304" gene complement(1200605..1201702) /locus_tag="Alide_1125" /db_xref="GeneID:10103159" CDS complement(1200605..1201702) /locus_tag="Alide_1125" /inference="protein motif:PFAM:PF00107" /note="PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dia:Dtpsy_0967 alcohol dehydrogenase zinc-binding domain protein" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase zinc-binding domain protein" /protein_id="YP_004125777.1" /db_xref="GI:319761840" /db_xref="GO:0008270" /db_xref="GO:0016491" /db_xref="InterPro:IPR002328" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="GeneID:10103159" /translation="MTAMMKAAVFVEKGRIELADKPIPDVGPNDALVRITTTTICGTD VHILKGEYPVAKGLTVGHEPVGVIEKLGSAVQGYQEGQRVIAGAICPNFNSYAAQDGF PSQDGSYLVPRGLCGCHGYKATAGWRFGNLIDGTQAEYVLVPDAQANLAPIPDGLTDE QVLMCPDIMSTGFKGAENANIRIGDTVVVFAQGPIGLCATAGARLLGATTIIAVDGND HRLGIAKKMGADVALNFRNVDVVEEVMKLTGGKGADSSIEALGTQATFAQAMKVLKPG GTLSSLGVYSEDLSIPLAQFAAGLGDHTIRTALCPGGKERMRRLMNVIAANRLDLGVL VTHQRRLDEIVEAYDLFSHQRDGVLKIAIKP" misc_feature complement(1200608..1201693) /locus_tag="Alide_1125" /note="Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063" /db_xref="CDD:31263" misc_feature complement(1200608..1201690) /locus_tag="Alide_1125" /note="NADP(H)-dependent alcohol dehydrogenases; Region: NADP_ADH; cd08285" /db_xref="CDD:176245" misc_feature complement(order(1200719..1200721,1200725..1200727, 1200734..1200736,1200746..1200748,1200758..1200766, 1200776..1200793,1200797..1200817,1200827..1200838, 1200839..1200841,1200845..1200856,1200860..1200862, 1200875..1200880,1200905..1200907,1201019..1201021, 1201070..1201093,1201151..1201156,1201172..1201174, 1201181..1201186,1201259..1201261,1201376..1201378, 1201388..1201393,1201397..1201399,1201403..1201408, 1201415..1201426,1201616..1201618)) /locus_tag="Alide_1125" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176245" misc_feature complement(order(1201202..1201204,1201517..1201519, 1201574..1201576,1201580..1201582)) /locus_tag="Alide_1125" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176245" misc_feature complement(order(1200851..1200859,1200920..1200928, 1200998..1201000,1201052..1201057,1201118..1201132, 1201190..1201192,1201202..1201204,1201574..1201579)) /locus_tag="Alide_1125" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176245" gene complement(1201795..1202391) /locus_tag="Alide_1126" /db_xref="GeneID:10103160" CDS complement(1201795..1202391) /locus_tag="Alide_1126" /inference="protein motif:TFAM:TIGR00177" /note="KEGG: ajs:Ajs_1051 molybdopterin adenylyltransferase; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain" /codon_start=1 /transl_table=11 /product="molybdenum cofactor synthesis domain protein" /protein_id="YP_004125778.1" /db_xref="GI:319761841" /db_xref="InterPro:IPR001453" /db_xref="InterPro:IPR008284" /db_xref="InterPro:IPR020817" /db_xref="GeneID:10103160" /translation="MTNTAHAYAPVKIGIVSISDRASSGDYEDKGLPALHDWLKRALH NPIGFEPRLIPDDKERISATLIELVNLGCSLVLTTGGTGPALRDVTPEATLAVADKEM PGFGEQMRQISLRFVPTAILSRQVAVIRGKSLIINLPGQPKAIAETLEGLKNADGTPQ VPGIFTAVPYCIDLIDGPYLETRPEVCKAFRPKTAVRS" misc_feature complement(1201867..1202361) /locus_tag="Alide_1126" /note="MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea...; Region: MogA_MoaB; cd00886" /db_xref="CDD:58167" misc_feature complement(order(1201951..1201953,1201960..1201962, 1201972..1201977,1202053..1202055,1202143..1202151)) /locus_tag="Alide_1126" /note="MPT binding site; other site" /db_xref="CDD:58167" misc_feature complement(order(1201867..1201869,1202020..1202022, 1202029..1202031,1202059..1202064,1202071..1202073, 1202086..1202094,1202116..1202118,1202128..1202130, 1202134..1202139,1202143..1202145)) /locus_tag="Alide_1126" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:58167" gene complement(1202388..1203056) /locus_tag="Alide_1127" /db_xref="GeneID:10103161" CDS complement(1202388..1203056) /locus_tag="Alide_1127" /inference="protein motif:PFAM:PF04751" /note="PFAM: protein of unknown function DUF615; KEGG: dia:Dtpsy_0970 protein of unknown function DUF615" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125779.1" /db_xref="GI:319761842" /db_xref="InterPro:IPR006839" /db_xref="GeneID:10103161" /translation="MSRKPQKGYFVKGHFVAEGSELDLQLKAELKGTAGATKTDLKRE MEALQALGTELLTLRADLLARLDLPEKLQEALDEARRITNFEGKRRQMQFVGKLMRKL EDDTVAAIRAALDEQRSGSAAEKLALHQAEHWRDRLIAADDALPQWLEQFPDTDTQQV RALIRQARKDAPPEDKAAVSQGLAPRKGRAYRELFQLVREHMARAQAHNEASSETHHE EQRP" misc_feature complement(1202457..1202945) /locus_tag="Alide_1127" /note="Protein of unknown function (DUF615); Region: DUF615; cl01147" /db_xref="CDD:194052" gene 1203139..1204560 /locus_tag="Alide_1128" /db_xref="GeneID:10103162" CDS 1203139..1204560 /locus_tag="Alide_1128" /inference="protein motif:PFAM:PF01523" /note="PFAM: peptidase U62 modulator of DNA gyrase; KEGG: dia:Dtpsy_0971 peptidase U62 modulator of DNA gyrase" /codon_start=1 /transl_table=11 /product="peptidase u62 modulator of DNA gyrase" /protein_id="YP_004125780.1" /db_xref="GI:319761843" /db_xref="InterPro:IPR002510" /db_xref="GeneID:10103162" /translation="MNTPSTRAKSAAPAQHAARPESGFSYTREFFEGLVDHALAHARK LGASDAGADASEGCGLSVNVRKGELETVERNRDKSLGVTVYLGHRRGNASTSDFSPAA VERTVQAAYDIARFTAEDHVAGLPDEADIAPAGTHRDLQLFHPWAITSEQAAQLALQC EAAAFKTHRRITNSEGAGVSAQQSHFFSAHTRGFRGGYASSRHSISVAPIASMPGRNA EMQRDAWYSSMRDARDLAAPEAVGRYAAERALSRLGSRKIPTTECPVLFESPLAAGLL GGFVQAVSGGALYRRSSFLVDSLGKQVFADHIDLAEDPFIPGGKGSSPFDEEGVRVAP RQVVEAGRVQGYFLSTYSARKLGMKTTGNAGGSHNLLLSSRLTQPGDDLDAMLRKLGT GLFVIELMGQGVNYVTGDYSRGASGFWVENGRIAYPVHEITIAGNLKDMLRGIVAVGA DAYNYGAKTVGSILIERMKVAGS" misc_feature 1203304..1204176 /locus_tag="Alide_1128" /note="Putative modulator of DNA gyrase; Region: PmbA_TldD; pfam01523" /db_xref="CDD:190021" misc_feature 1203313..1204554 /locus_tag="Alide_1128" /note="Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]; Region: TldD; cl00398" /db_xref="CDD:193802" gene complement(1204570..1204791) /locus_tag="Alide_1129" /pseudo /db_xref="GeneID:10103163" gene 1205591..1206127 /locus_tag="Alide_1130" /db_xref="GeneID:10103164" CDS 1205591..1206127 /locus_tag="Alide_1130" /inference="similar to AA sequence:KEGG:SRM_02731" /note="KEGG: srm:SRM_02731 two-component sensor histidine kinase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125781.1" /db_xref="GI:319761844" /db_xref="GeneID:10103164" /translation="MTKTPPTEKWLLNERAVIAGELQAIEAELERLIVRKAYLHKLLT ALDEVYSLVTPVVSPVQGLVVHGHTRYGGRGNGIQWVRDMLCAAYPSALDTAALTLAA EEAFGLVHATPAQRGKFRNNSLRTALRTLLAQGEAERLHDYKGVPHRAGVWRWVPPEP AYADVVAQAEHAREHAWP" gene 1206118..1206453 /locus_tag="Alide_1131" /db_xref="GeneID:10103165" CDS 1206118..1206453 /locus_tag="Alide_1131" /inference="similar to AA sequence:KEGG:xccb100_2303" /note="KEGG: xca:xccb100_2303 siroheme synthase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125782.1" /db_xref="GI:319761845" /db_xref="GeneID:10103165" /translation="MALTMTRTRTQTTLTKLAQKLGEVKGELVFVDEWMAEKGAPVEL AHRRVLLVEQAEALVLTLQLFDPELDVDAVAQGEGWRKAYRVRSAKSLRTQYLRLHQA SVSSARPPR" gene complement(1206428..1209505) /locus_tag="Alide_1132" /db_xref="GeneID:10103166" CDS complement(1206428..1209505) /locus_tag="Alide_1132" /inference="protein motif:PFAM:PF00353" /note="PFAM: Hemolysin-type calcium-binding region; KEGG: cvi:CV_0516 calcium binding hemolysin" /codon_start=1 /transl_table=11 /product="hemolysin-type calcium-binding region protein" /protein_id="YP_004125783.1" /db_xref="GI:319761846" /db_xref="GO:0005509" /db_xref="InterPro:IPR001343" /db_xref="InterPro:IPR018511" /db_xref="InterPro:IPR018512" /db_xref="GeneID:10103166" /translation="MSSAVMSAGGAGAPAEGKKLFPLRKRTGTAAFHLSKDAVDFGAE DLERLTEKQAVMLLAETVWGSTKEMNCPHCGTFDAHYFYSRELRWKCKCCDKKFSVTS KTVLADHKLSLVKILKIAYSWANGASGKPALQLRRDWNVGYPTVFTLVHKLREGLLRG FNVGVLCGVQEMAFFRTAGLALGDIPVERQYDPTDAGFINDESVNKYEQVIWSAYGSL GSTRLTNPVGSAPEPSFVYQAGQGPLVLNPQGSHHTLELHGVLEQDVTPYRKGNDLVL LLNDADRVTVKDWFLAKPDAPLIKTFSIGKQTSWTDRSFAQASLLVEGTTGDDTVTST EQPETYLYWRGDGHDVVRVSEAATAPSPDTVDEVRFKDISSEEVAFTRVGDDLKVVLP ADGSITVKDWFLAAVNRQVEYMAFTDQRLSAAEITARVGTVVLTGGNDTYTGTAGADI VYGMGGSDIINGDPASASSSDRVYGGDGNDTLYGLGGNDQLYGQQGDDKLYGGDGDDL LDGGSDNDTLDGGRGADTLIGGAGDDILGGAAGSVDAGYYNGYYGLGYYDPGAGNTYR GGKGADTLNGTSRADRYLFDLGDGHDTLREVEVTGQPSGQVDVLRFGPGIAPADISIR RSTVDLVLAHVNGTDSVTVKSWFTAPGSSANQVERVEFADGTAWSHIDLTAWALVVTG TEQGERLEGVGTFNDTLYGLGGNDILVGGAGNDILDGGADNDVLDGGVGADVLLGGSG DDVLGGALGSEDSGRVVHGTFQSPGAGNVYEGGTGNDTLRGTALADTYHFNLGEGQDS LTEVEMAGQPAGQVDVLKFGPGIAPGDIQVLRQGSDLVLAHVNGADRFTVKSWYTTQG STANQLEQVRFADGTAWSADELTERGLVVQGTSTGETLTGLTAYANTLLGEGGNDVLN GGTLSDQLWGGLGNDHLYGGQGSDFYYHRLGDGYDTVVDSGGMADTLVFPDAALSNAS FYSKGADLEVHFGTGQGVLVKNQLSSSPVVEFMMFGDQVYSAAHIATLVGVPS" misc_feature complement(1209041..1209376) /locus_tag="Alide_1132" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677" /db_xref="CDD:33474" misc_feature complement(1209224..1209361) /locus_tag="Alide_1132" /note="Transposase zinc-ribbon domain; Region: Zn_Tnp_IS1595; pfam12760" /db_xref="CDD:193236" misc_feature complement(<1206620..1207672) /locus_tag="Alide_1132" /note="RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG2931" /db_xref="CDD:32755" misc_feature complement(1207487..1207621) /locus_tag="Alide_1132" /note="Haemolysin-type calcium binding protein related domain; Region: HCBP_related; pfam06594" /db_xref="CDD:191564" misc_feature complement(1206872..1207006) /locus_tag="Alide_1132" /note="Haemolysin-type calcium binding protein related domain; Region: HCBP_related; pfam06594" /db_xref="CDD:191564" misc_feature complement(<1206692..>1206805) /locus_tag="Alide_1132" /note="Peptidase M10 serralysin C terminal; Region: Peptidase_M10_C; cl12108" /db_xref="CDD:189247" gene complement(1209520..1210224) /locus_tag="Alide_1133" /db_xref="GeneID:10103167" CDS complement(1209520..1210224) /locus_tag="Alide_1133" /inference="similar to AA sequence:KEGG:Reut_C5923" /note="KEGG: reu:Reut_C5923 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125784.1" /db_xref="GI:319761847" /db_xref="GeneID:10103167" /translation="MLRVHLHTGDLEGRNTANQLAVIDIAYAKKGALADYLVGMTLRG QGEVEPDAVLRYPRWSASLWDLVARALTRLLYRANQAPASERPDKRCAYATRLCAVIE RSTLDGAGVELGTARIFQKEGQRGHYTAVFNEDINGQHVGHFTYGSKRLDAGDLLLRA ICWALFDKDTLGPYPALILPPTLQIDGVDRFHVEALTEPARTGFERYRGANFPTTQAP EPLAKAQDYVAFLMHG" gene complement(1210224..1210535) /locus_tag="Alide_1134" /db_xref="GeneID:10103168" CDS complement(1210224..1210535) /locus_tag="Alide_1134" /inference="similar to AA sequence:KEGG:Mpe_B0404" /note="KEGG: mpt:Mpe_B0404 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125785.1" /db_xref="GI:319761848" /db_xref="GeneID:10103168" /translation="MRVKVRPLQCKGQLLPRQLATQQPPRIGALRVAEERDHELGRPV LRARLLDMQNGTEADLLPDLSDARLLWAENNRLRFAGFERVDNANYAQTWEVEVAEGV A" gene complement(1210686..1211267) /locus_tag="Alide_1135" /db_xref="GeneID:10103169" CDS complement(1210686..1211267) /locus_tag="Alide_1135" /EC_number="3.4.21.88" /inference="protein motif:TFAM:TIGR00498" /note="TIGRFAM: LexA repressor; KEGG: bpy:Bphyt_3718 LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region" /codon_start=1 /transl_table=11 /product="lexa repressor" /protein_id="YP_004125786.1" /db_xref="GI:319761849" /db_xref="GO:0004252" /db_xref="InterPro:IPR006197" /db_xref="InterPro:IPR006200" /db_xref="InterPro:IPR019759" /db_xref="GeneID:10103169" /translation="MTEHDEKYLAKLRTHWKRHAAFPSMAKLCDTVGLSSTSSVFALV GRLVEAGYLARVDSRIAPTRKFFARPLLSPVRAGQPQPASQEEPEVLTIDDYLIDDPN RTSLHKVRGDSMKDAGILEGDLVVVEHHTPTKPGDIVVAWADNELTVKTLLLDPQGRY YLQPANSAYQPIFPATSLEVMGVVIGVVRKTRR" misc_feature complement(1210698..1211234) /locus_tag="Alide_1135" /note="LexA repressor; Validated; Region: PRK00215" /db_xref="CDD:178931" misc_feature complement(1210713..1210946) /locus_tag="Alide_1135" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature complement(order(1210818..1210820,1210929..1210931)) /locus_tag="Alide_1135" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 1212050..1212373 /locus_tag="Alide_1136" /db_xref="GeneID:10103170" CDS 1212050..1212373 /locus_tag="Alide_1136" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004125787.1" /db_xref="GI:319761850" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103170" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature 1212050..1212307 /locus_tag="Alide_1136" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1212370..1213285 /locus_tag="Alide_1137" /pseudo /db_xref="GeneID:10103171" gene 1213322..1215220 /locus_tag="Alide_1138" /pseudo /db_xref="GeneID:10103172" gene 1215217..1216530 /locus_tag="Alide_1139" /db_xref="GeneID:10103173" CDS 1215217..1216530 /locus_tag="Alide_1139" /inference="similar to AA sequence:KEGG:Daci_5142" /note="KEGG: dac:Daci_5142 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125788.1" /db_xref="GI:319761851" /db_xref="GeneID:10103173" /translation="MNAPAAAPTIRPRDRDAVVQSLRAGVVPRSGQHLIQVGRTREIE TLIGDIDRIVDGGSTFRLVIGEYGAGKTFFLNLVRAVALEKKLVVASADLNPDRRLHA SGGQARSLYAELMRNIATRTKPDGGALGGIVEKFIATAKAEAKAAGVSTEAVIRQKLE HLTELVNGFDFADVIAAYCRGFEEGNEQLKADAIRWLRGEFSTKTDARVALGVRTIVD DAAVFDQLKLMARFVRLAGFSGLLVSLDELVNLYKLANAQARNSNYEQILRILNDSLQ GTAVGLGFILGGTPEFLLDTRRGLYSYSALQSRLSQNTFAADGLVDFSGPVVRLSSLT PEDFYVLLQKIRHVYALGDATKHLLPDQGIFSFMEHCANRIGDTYFRTPRTTITSFVN MLAVLEQNPGTDWQQLLGGLEVTPDTAGAADLRVDEDDELASFKL" misc_feature 1215244..1216467 /locus_tag="Alide_1139" /note="P-loop Domain of unknown function (DUF2791); Region: DUF2791; pfam10923" /db_xref="CDD:192675" gene 1216539..1218743 /locus_tag="Alide_1140" /db_xref="GeneID:10103174" CDS 1216539..1218743 /locus_tag="Alide_1140" /inference="protein motif:PFAM:PF00270" /note="KEGG: dac:Daci_5141 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein" /codon_start=1 /transl_table=11 /product="dead/deah box helicase domain protein" /protein_id="YP_004125789.1" /db_xref="GI:319761852" /db_xref="GO:0003676" /db_xref="GO:0004386" /db_xref="GO:0005524" /db_xref="GO:0008026" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:10103174" /translation="MASKSSSFHLLDERIQRFIWAEGWEELRDAQEKAIPLIVKGEQD VIISAATAAGKTEAAFFPALTHLLATDGDGLIVYVSPLKALINDQFGRLERLCAQLEI PVWPWHGDVSASVKTRFLAKRRGVLLITPESLEALLCNRGSSVGAVFERVTFFVVDEL HAFIGSERGKQLQSLMHRIERALDRKVPRIGLSATLGDMRLAGQFLRPDAEPAQVNSA AAGSELKVLVKGYEEPLAVKSERDDEGESEPVTPGQVAAHLFKVLRGANNLVFPNSRR QVEQFTHLLNKMCERERVPNEFWPHHGSLSKEIRAETEAALKQKELPATALCTNTLEL GIDIGAVKSVAQIGPPPSVASLRQRLGRSGRRKGEPAILRGYCIEDALGPRASLRDKL RLDTVQTAAMISLLVDKWFEPPRVQGVHLSTLVQQLLSAIAQRGGVMAGEAYGLLCGP GAPFTGLSKQEFVDLLRHLGHKELLTQDSSGALLHGRVGEKFVNHYSFYAAFASEEEF RVVAGGKTLGTLPVDQMLLPGQRILFAGRTWHVDEVDEQQKAIYVTRAPGGAPPMFSG GVGRTHTRVRQRMRELLEGTSSPPFLDAGAQRFLTQARTAYSHLRLASEFALDQGKEL MLMTWLGDAANEAVACLLISRGFVAFPSGPGVEVVKGERSTQGILDALADIAAADMPL LDILLADVKNLAREKWDWALPDALLRKAYASLYLDLDEGLAWVRQVTGGRQS" misc_feature 1216551..>1218464 /locus_tag="Alide_1140" /note="Lhr-like helicases [General function prediction only]; Region: Lhr; COG1201" /db_xref="CDD:31394" misc_feature 1216665..1217126 /locus_tag="Alide_1140" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 1216692..1216706 /locus_tag="Alide_1140" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 1217010..1217021 /locus_tag="Alide_1140" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature 1217436..1217600 /locus_tag="Alide_1140" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl14882" /db_xref="CDD:197446" gene complement(1218907..1220466) /locus_tag="Alide_1141" /db_xref="GeneID:10103175" CDS complement(1218907..1220466) /locus_tag="Alide_1141" /inference="protein motif:TFAM:TIGR00722" /note="KEGG: dac:Daci_2654 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type hydro-lyase tartrate/fumarate alpha region" /codon_start=1 /transl_table=11 /product="hydro-lyase, fe-s type, tartrate/fumarate subfamily, alpha subunit" /protein_id="YP_004125790.1" /db_xref="GI:319761853" /db_xref="GO:0016829" /db_xref="GO:0016836" /db_xref="InterPro:IPR004646" /db_xref="InterPro:IPR004647" /db_xref="InterPro:IPR011167" /db_xref="GeneID:10103175" /translation="MTTTIRYDDLVESVAAALQYISYYHPADYIAHLARAYEREQSPA AKDAMAQILTNSKMSATGHRPICQDTGIVNVFLKLGMDVRFEGFAADQGLEDAINEGV RRGYNHPDNTLRASVVADPHFARKNTRDNTPAVINVQIVPGDKLDVTVAAKGGGSENK SKMIMMNPSDNLVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAVLLAKESLMEDLDM YELQAKAAKGEKLTQVEELRLELYEKVNALGIGAQGLGGLSTVLDIKIKMYPTHAASK PVAMIPNCAATRHAHFVMDGSGPVYLEAPSLDLWPKIDWEPDYNKSKRVDLNTLTSAE VASWKPGDTLLLNGKMLTGRDAAHKRIQDMLAKGEKLPVDFTNRVIYYVGPVDPVRDE AVGPAGPTTATRMDKFTDMMLEKTGLIAMIGKAERGPVAIESIKRHKSAYLMAVGGAA YLVSKAIKAAKVVGFEDLGMEAIYEFDVVDMPVTVAVDAGGTSAHITGPAEWQKRIAT GEFKGIEVASA" misc_feature complement(1219588..1220439) /locus_tag="Alide_1141" /note="Fumarate hydratase (Fumerase); Region: Fumerase; cl00851" /db_xref="CDD:186222" misc_feature complement(1218964..1219581) /locus_tag="Alide_1141" /note="Fumarase C-terminus; Region: Fumerase_C; cl00795" /db_xref="CDD:186192" gene 1220635..1222020 /locus_tag="Alide_1142" /db_xref="GeneID:10103176" CDS 1220635..1222020 /locus_tag="Alide_1142" /inference="protein motif:TFAM:TIGR00979" /note="KEGG: aav:Aave_1491 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like" /codon_start=1 /transl_table=11 /product="fumarate hydratase, class ii" /protein_id="YP_004125791.1" /db_xref="GI:319761854" /db_xref="GO:0004333" /db_xref="InterPro:IPR000362" /db_xref="InterPro:IPR005677" /db_xref="InterPro:IPR018951" /db_xref="InterPro:IPR020557" /db_xref="GeneID:10103176" /translation="MTTRIERDTFGPIEVPAGRLWGAQTQRSLQNFDISGERQPREII KALAQVKRASATVNHALGLLDAKKKDAIVAAAQEVIDGRHPDEFPLVVWQTGSGTQTN MNLNEVIANRASELLGGERGEARLVHPNDDVNKSQSSNDVFPTAAHVAAVDALTHKLL PAIEVLRKTLAQKAKDFDGIVKIGRTHLQDATPLTLGQEISGWVAQLEHGARHVKDAL PHLYELALGGTAVGTGLNAPKGYAEGVARELAAITCLPFVTSPNKFESLASQDALVHA HGALKTLAASMNKIANDVRWLASGPRSGIGEITIPENEPGSSIMPGKVNPTQSEAVTM LAAQVMGNDVAINIGGMSGNFELNVFRPVVAHNFLQSVRLLADGIISFNNNCAVGIEP NRERIGYLVQQSLMLVTALNPHIGYDKAAYIAKKGHKEGTSLREAAIASGYVTAEQFD QWVVPENMVGR" misc_feature 1220635..1222017 /locus_tag="Alide_1142" /note="fumarate hydratase; Reviewed; Region: fumC; PRK00485" /db_xref="CDD:179045" misc_feature 1220644..1222008 /locus_tag="Alide_1142" /note="Class II fumarases; Region: Fumarase_classII; cd01362" /db_xref="CDD:176465" misc_feature order(1220923..1220925,1220929..1220931,1221007..1221009, 1221016..1221027,1221046..1221054,1221193..1221195, 1221601..1221603,1221607..1221609,1221622..1221624) /locus_tag="Alide_1142" /note="active site" /db_xref="CDD:176465" misc_feature order(1221187..1221198,1221208..1221210,1221226..1221231, 1221247..1221249,1221259..1221261,1221271..1221273, 1221325..1221327,1221415..1221420,1221427..1221429, 1221436..1221441,1221445..1221447,1221454..1221459, 1221466..1221468,1221475..1221480,1221487..1221492, 1221496..1221501,1221508..1221513,1221661..1221663, 1221685..1221687,1221694..1221702,1221859..1221861) /locus_tag="Alide_1142" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176465" gene complement(1222021..1222803) /locus_tag="Alide_1143" /db_xref="GeneID:10103177" CDS complement(1222021..1222803) /locus_tag="Alide_1143" /inference="protein motif:PFAM:PF00027" /note="KEGG: dia:Dtpsy_0976 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_004125792.1" /db_xref="GI:319761855" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:10103177" /translation="MHASPRPSADPPLQRPLLSAQEREAIDQSPWFSSLPPSLRHDIF RLGHVTRYAHGDLIAKQGQPIRNWFACASGALRFRRTTTAGRRVTLAYVEPGIWVGEA EVLYGRPCTYDAHAHGNTTLLSVPEAALRALLQQHPSFGQSLLTLQAHSMRSLYLMME DVATMPLRARLTKQLLHLQERFGPHHVAPGESRPLGLSLAQDELAGLLGGSRQRVNVE LKWLERQGLISVRPRGIELHDVQGLQALVAQAAAAAQGKPDG" misc_feature complement(1222087..1222731) /locus_tag="Alide_1143" /note="cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:31008" misc_feature complement(1222369..1222713) /locus_tag="Alide_1143" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature complement(order(1222468..1222476,1222501..1222506)) /locus_tag="Alide_1143" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature complement(order(1222384..1222392,1222402..1222410)) /locus_tag="Alide_1143" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature complement(1222090..1222215) /locus_tag="Alide_1143" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(1222990..1224000) /locus_tag="Alide_1144" /db_xref="GeneID:10103178" CDS complement(1222990..1224000) /locus_tag="Alide_1144" /inference="protein motif:PFAM:PF04069" /note="PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dia:Dtpsy_0979 glycine betaine transporter periplasmic subunit" /codon_start=1 /transl_table=11 /product="substrate-binding region of abc-type glycine betaine transport system" /protein_id="YP_004125793.1" /db_xref="GI:319761856" /db_xref="GO:0005215" /db_xref="GO:0005488" /db_xref="InterPro:IPR007210" /db_xref="GeneID:10103178" /translation="MTFACKTLRPLLAATGLALLGLTAQAADLPGKGITVQPLKSSIA EETFQTLLVMKALQKLGYEVQPIKEVEYPTAHIAIANGDATFMADHWNPLHADYYKNA GGDAKLYRKGIFSANAAQGYLIDKKTADQYKITNIAQFKDPKIAALFDSNGDGKADLT GCNPGWGCEAVIEHQLDAYQLRGTVTHNQGSYSALIADTITRYRAGKPVFYYTWTPYW VSNELKPGKDVVWLEVPFSSLPGEQKGMDTKLPNDKNYGFVVNNQQIVANKAWAEKNP AAARLFEVMQLSVADINAQNHLMSQGQNKNADIERHANGWIAAHRKTFDGWIEQALAA AR" sig_peptide complement(1223920..1224000) /locus_tag="Alide_1144" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 27" misc_feature complement(1222993..1223919) /locus_tag="Alide_1144" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(1223044..1223877) /locus_tag="Alide_1144" /note="Substrate binding domain of ABC-type glycine betaine transport system; Region: OpuAC; pfam04069" /db_xref="CDD:146609" gene complement(1224076..1225188) /locus_tag="Alide_1145" /db_xref="GeneID:10103179" CDS complement(1224076..1225188) /locus_tag="Alide_1145" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0980 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125794.1" /db_xref="GI:319761857" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103179" /translation="MNENNNDTPAGLDDPWAAASSAADGPATGSADPWGAGTADPAQS APDWLSSPSASPAPADADAGGLQALWHQISTDGLPVQGWINDGLHWAVENFRPFFQSV RAPIDATLSGVTDALLALPWPVMLLLISLLAWQFAGRMLALATAVSLGVVVLLGIWPD AMVTLALVLTSLLFCVVLGLPLGIVLAASDRAQRFTRPLLDAMQTTPAFVYLVPVVML FGIGNVPGVIVTIVFALPPLVRLTNLGLRQVRPDLIEASRAYGASPWQLLWKVQLPLA LPSIMAGINQALMLSLSMVVIASMIAVGGLGQMVLRGIGRLDMGLASIGGLGIVLLAV VLDRITQAMGAPRRGGQRWWHTGPLGLLFGRLRQKS" misc_feature complement(1224268..1224708) /locus_tag="Alide_1145" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1224289..1224294,1224301..1224312, 1224331..1224333,1224340..1224345,1224385..1224387, 1224436..1224438,1224445..1224450,1224460..1224462, 1224466..1224471,1224478..1224480,1224484..1224486, 1224490..1224495,1224541..1224543,1224547..1224552, 1224559..1224588,1224592..1224603,1224628..1224630, 1224643..1224648,1224655..1224660)) /locus_tag="Alide_1145" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1224295..1224312,1224541..1224585)) /locus_tag="Alide_1145" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1224292..1224294,1224508..1224510, 1224541..1224543)) /locus_tag="Alide_1145" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1224364..1224366,1224376..1224381, 1224397..1224435)) /locus_tag="Alide_1145" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1225185..1226489) /locus_tag="Alide_1146" /db_xref="GeneID:10103180" CDS complement(1225185..1226489) /locus_tag="Alide_1146" /inference="protein motif:TFAM:TIGR01186" /note="TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: ajs:Ajs_1065 glycine betaine/L-proline ABC transporter, ATPase subunit; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="glycine betaine/l-proline abc transporter, atpase subunit" /protein_id="YP_004125795.1" /db_xref="GI:319761858" /db_xref="GO:0005524" /db_xref="GO:0015171" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005892" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103180" /translation="MAKQIIIDHVFKVFGDAPQEALRLVQQGLSKQEILERTGHSIGV FDASFTIETGEIFVVMGLSGSGKSTLVRMLNRLIAPTSGRILVDGQDINELSQRQLRA LRRKDISMVFQSFALMPHMTVLDNTAFGLELAGMDKAGRQQAAQEALEQVGLAGWGAS YPDELSGGMQQRVGLARALAADPSILLMDEAFSALDPIIRTEMQSELLRLQQVKRRTI VFISHDLDEAMRIGDRIAIMKDGHVVQVGTPDEILREPANDYVRDFVRGVDAAAVFKA RDIARQAFTMVSERSDRGCRAALRLLEDSDHEYAYVLSSRKRFLGVVSSQSLRRALHG HHGPLGLQHAFLDDAPTLAADTPVAELFGPMASAPCPLPVMDGDGRFLGVVSRTTLMR FLDRDTPPVPPPQAELPPVQLDRQPPHDGAAPAARIEGDATA" misc_feature complement(1225302..1226489) /locus_tag="Alide_1146" /note="ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]; Region: ProV; COG4175" /db_xref="CDD:33915" misc_feature complement(1225671..1226477) /locus_tag="Alide_1146" /note="This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these...; Region: ABC_Pro_Gly_Bertaine; cd03294" /db_xref="CDD:73053" misc_feature complement(1226286..1226309) /locus_tag="Alide_1146" /note="Walker A/P-loop; other site" /db_xref="CDD:73053" misc_feature complement(order(1225821..1225823,1225920..1225925, 1226151..1226153,1226283..1226291,1226295..1226300)) /locus_tag="Alide_1146" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73053" misc_feature complement(1226151..1226162) /locus_tag="Alide_1146" /note="Q-loop/lid; other site" /db_xref="CDD:73053" misc_feature complement(1225968..1225997) /locus_tag="Alide_1146" /note="ABC transporter signature motif; other site" /db_xref="CDD:73053" misc_feature complement(1225920..1225937) /locus_tag="Alide_1146" /note="Walker B; other site" /db_xref="CDD:73053" misc_feature complement(1225902..1225913) /locus_tag="Alide_1146" /note="D-loop; other site" /db_xref="CDD:73053" misc_feature complement(1225815..1225835) /locus_tag="Alide_1146" /note="H-loop/switch region; other site" /db_xref="CDD:73053" misc_feature complement(1225311..1225637) /locus_tag="Alide_1146" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing...; Region: CBS_pair_ABC_OpuCA_assoc2; cd04583" /db_xref="CDD:73083" gene 1227143..1229140 /locus_tag="Alide_1147" /db_xref="GeneID:10103181" CDS 1227143..1229140 /locus_tag="Alide_1147" /inference="protein motif:TFAM:TIGR02188" /note="KEGG: aav:Aave_1499 acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="acetate/CoA ligase" /protein_id="YP_004125796.1" /db_xref="GI:319761859" /db_xref="GO:0003987" /db_xref="GO:0016208" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR011904" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10103181" /translation="MSASPSAIESVLIENRVFPPPEGLVKTARISGMAGYEALCAEAD KDFEGFWARLARENLQWTRPFTKTLDESNAPFYQWFADGELNASANCLDRHMGTPVES KTAIIFEADDGAVTKVTYKELLARVAQFANALKAQGVKKGDRVLIYMPMTIEGVVAMQ ACARIGATHSVVFGGFSAKAVQERIIDAGAVAVITANYQLRGGKELPLKAIVDEGIAM GGCESIKSVLVYERTPTAWNRVDGRDKSFAEALAGQSTECVPVAVEAEHPLFILYTSG STGKPKGVQHSTGGYLLWAKLTMDWTFDLRPDDVFWCTADIGWVTGHTYIAYGPLAAG GTQVMFEGIPTYPNAGRFWQMIERHKVSIFYTAPTAIRSLIKAADSDEKVHPKNWDLS SLRILGSVGEPINPEAWMWYYKNVGGERCPIVDTWWQTENGGHLITPLPGATPLVPGS CTLPLPGIAAAIVDETGKDVPNGSGGMLVIKRPWPSMIRTIWNDPERFKKSYFPEEMG GKIYLAGDGAVRDAKTAYFRVTGRIDDVLNVSGHRMGTMEIESALVAKSDLVAEAAVV GRPDDLTGEAICAFVVLKRARPTGEEAKQIAAELRNWVAKEIGPIAKPKDIRFGDNLP KTRSGKIMRRLLRSLAKGEAITQDTSTLENPAILDQLAQNN" misc_feature 1227191..1229134 /locus_tag="Alide_1147" /note="acetyl-CoA synthetase; Provisional; Region: PRK00174" /db_xref="CDD:178915" misc_feature 1227236..1227478 /locus_tag="Alide_1147" /note="Domain of unknown function (DUF3448); Region: DUF3448; pfam11930" /db_xref="CDD:192884" misc_feature 1227587..1229071 /locus_tag="Alide_1147" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(1229255..1230301) /locus_tag="Alide_1148" /db_xref="GeneID:10103182" CDS complement(1229255..1230301) /locus_tag="Alide_1148" /inference="protein motif:PFAM:PF00092" /note="KEGG: aav:Aave_1061 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A" /codon_start=1 /transl_table=11 /product="von willebrand factor type a" /protein_id="YP_004125797.1" /db_xref="GI:319761860" /db_xref="InterPro:IPR002035" /db_xref="GeneID:10103182" /translation="MVFLWPTLLWLLLVLPLLVLLYLWLLRRRKAAAVPYPGLALVRQ ALGPGHGWRRHVPPLLFLLGLAALLVAAARPLAVLQLPSQQQTIILAMDVSGSMRATD VQPDRLTAAQNAAKAFIQDLPRHVRVGVVAFAGTAQLAQLPTQSHEDLLKAIDSFQLQ RGTATGNGIMMALATLFPDAGIDIAALGGRQSMRVRPIDEVGRADPAKKPFTPVAPGS YRSAAIIMLTDGQRTTGVDPLEAAQWAADRGVRVYTVGVGTVQGELIGFEGWSMRVRL DEDTLKAVALRTNAEYFHAATAQDLRKVYETLSSRLTVEKKETEVSALLALAGAALML LAAGMSVWWFGRIL" misc_feature complement(<1229564..1230040) /locus_tag="Alide_1148" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:197401" misc_feature complement(order(1229615..1229617,1229801..1229803, 1230023..1230025)) /locus_tag="Alide_1148" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:29222" gene complement(1230334..1231302) /locus_tag="Alide_1149" /db_xref="GeneID:10103183" CDS complement(1230334..1231302) /locus_tag="Alide_1149" /inference="protein motif:PFAM:PF01882" /note="PFAM: protein of unknown function DUF58; KEGG: aav:Aave_1062 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125798.1" /db_xref="GI:319761861" /db_xref="InterPro:IPR002881" /db_xref="GeneID:10103183" /translation="MPEAVRPPAAAPAAAERLLQRLEWTVIRRLDGLLQGSSRTLLRG SGIDLADLREYQPHDDVRHIDWNVTARLATPHVRVFTEDRDMTAWFLLDLSPSVDFGA PGQAKRDLAEGFVGVLARLLQRHGNRVGAVLHDGSAAMGRVLPARGGRRQVLQLLHAL ATSARPSSLIPAPGITELQRLLGGAQGLLRRRSAVFVVSDFLSAPGWDKPLARLAQRH DVVAVRLLDPLELELPDVGLLLLRDPETGEQLQVDTHERGFRHRFARLAAQREADLRA SLAHAGVDTLELSTDEDLLAALLRFMQLRGHRPRVAAANPALAAHG" misc_feature complement(1230913..1231167) /locus_tag="Alide_1149" /note="Protein of unknown function DUF58; Region: DUF58; pfam01882" /db_xref="CDD:190149" gene complement(1231295..1232326) /locus_tag="Alide_1150" /db_xref="GeneID:10103184" CDS complement(1231295..1232326) /locus_tag="Alide_1150" /inference="protein motif:PFAM:PF07726" /note="PFAM: ATPase associated with various cellular activities AAA_3; KEGG: aav:Aave_1063 ATPase" /codon_start=1 /transl_table=11 /product="atpase associated with various cellular activities aaa_3" /protein_id="YP_004125799.1" /db_xref="GI:319761862" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR011703" /db_xref="InterPro:IPR016366" /db_xref="GeneID:10103184" /translation="MQTIPAATDSTATLMEQILYEVKRVVVGQDRFLERVMVAMLAQG HLLVEGVPGLAKTLTVKTLAACIQGQFKRIQFTPDLVPADLVGTRMYNQRTGEFSTTL GPVFTHLLLADEINRAPAKVQSALLEVMQERQVTIAGQSHPVPEPFVVMATQNPIETE GTYQLPEAQVDRFMMKVLIGYPSEEEEFVIAQRALAPAVQVAAVATTGQLARLQADCR KVYVDPSLIQYAVRLVAATRAPQQHGLKDLAAHIACGASPRATIALAEGAQALAMLRG RGYALPEDLLDLAHDVLRHRISLSYEALAEGLDADALIGRIMNQLPAPARPLHHSAEE AAGAEARRA" misc_feature complement(1231355..1232326) /locus_tag="Alide_1150" /note="MoxR-like ATPases [General function prediction only]; Region: COG0714" /db_xref="CDD:31058" misc_feature complement(1231784..1232248) /locus_tag="Alide_1150" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(1232156..1232179) /locus_tag="Alide_1150" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(1231865..1231867,1231988..1231990, 1232153..1232176)) /locus_tag="Alide_1150" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(order(1231985..1231999,1232012..1232014)) /locus_tag="Alide_1150" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(1231811..1231813) /locus_tag="Alide_1150" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(1232341..1233240) /locus_tag="Alide_1151" /db_xref="GeneID:10103185" CDS complement(1232341..1233240) /locus_tag="Alide_1151" /inference="protein motif:PFAM:PF00089" /note="PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: aav:Aave_1064 peptidase S1 and S6, chymotrypsin/Hap" /codon_start=1 /transl_table=11 /product="peptidase s1 and s6 chymotrypsin/hap" /protein_id="YP_004125800.1" /db_xref="GI:319761863" /db_xref="GO:0004252" /db_xref="InterPro:IPR000209" /db_xref="InterPro:IPR001254" /db_xref="InterPro:IPR001940" /db_xref="GeneID:10103185" /translation="MPRPVRYSPSRSDRARPSADPAAPESPPPRPAPVAPRQRLPSAQ QAQWAAMALLAMLLAGGMWWLRPVPAPHITQKAIDAAVLHTLENHTLPSAAARAAEAV VPSVVRVMGFTTTKRGKEVERSVGTGVVIVDTGIILTNLHVVRGADRVSVTFADGTEA NASITGAQPENDLAVLQAHKVPDDLQAAPLRSTQHLRAGDGVVVVGFPFGIGPSASAG VVSGLQREFESPEGGQELRNLIQFDAAANPGNSGGPLVTLEGEVVGIVTAILNPTPAR TFIGIGFAVPIENAAQAAGMPPF" misc_feature complement(1232380..1232817) /locus_tag="Alide_1151" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" gene complement(1233345..1233707) /locus_tag="Alide_1152" /db_xref="GeneID:10103186" CDS complement(1233345..1233707) /locus_tag="Alide_1152" /inference="protein motif:TFAM:TIGR00778" /note="KEGG: dia:Dtpsy_2753 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase" /codon_start=1 /transl_table=11 /product="alkylhydroperoxidase like protein, ahpd family" /protein_id="YP_004125801.1" /db_xref="GI:319761864" /db_xref="InterPro:IPR003779" /db_xref="InterPro:IPR004675" /db_xref="GeneID:10103186" /translation="MSSSTDYKILTREISGNVGQLRASQPDVMQGFNAMSKAALAPGA IDAKTKELIALGIGVAARCDGCIGFHTQALARLGATRAEVHETLAIAVYMGGGPALMY AANAVAAFDQCAPEQAPA" misc_feature complement(1233381..1233632) /locus_tag="Alide_1152" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene 1233852..1234160 /locus_tag="Alide_1153" /db_xref="GeneID:10103187" CDS 1233852..1234160 /locus_tag="Alide_1153" /inference="protein motif:PFAM:PF01022" /note="KEGG: dia:Dtpsy_2752 transcriptional regulator, TrmB; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR" /codon_start=1 /transl_table=11 /product="regulatory protein arsr" /protein_id="YP_004125802.1" /db_xref="GI:319761865" /db_xref="GO:0003700" /db_xref="InterPro:IPR001845" /db_xref="GeneID:10103187" /translation="MATAADRGFMQQCTAQAAALLRTVGNEQRLLVLCLLIDRGEASV GQLLEQMDLSQSALSQHLARMREEGLVTFRRDAQTLYYRIADPAVEKLVAALKAIYCP " misc_feature 1233912..1234148 /locus_tag="Alide_1153" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature order(1233912..1233917,1233921..1233923,1233930..1233932, 1233939..1233944,1233951..1233956,1233963..1233965, 1234056..1234058,1234122..1234127,1234131..1234139, 1234143..1234148) /locus_tag="Alide_1153" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature order(1233915..1233920,1233930..1233938,1233978..1233986, 1234011..1234022,1234026..1234031,1234038..1234043, 1234047..1234052,1234068..1234076,1234089..1234097) /locus_tag="Alide_1153" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature order(1233978..1233980,1233987..1233989,1234122..1234124) /locus_tag="Alide_1153" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene 1234190..1234387 /locus_tag="Alide_1154" /db_xref="GeneID:10103188" CDS 1234190..1234387 /locus_tag="Alide_1154" /inference="similar to AA sequence:KEGG:Dtpsy_2751" /note="KEGG: dia:Dtpsy_2751 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125803.1" /db_xref="GI:319761866" /db_xref="GeneID:10103188" /translation="MKRNVGGLDRGLRIVVGLVLIALAATGTVGWWGWIGVVPLLTGL VGGCPAYSLLGVNTCPMRKSE" misc_feature 1234190..1234375 /locus_tag="Alide_1154" /note="Protein of unknown function (DUF2892); Region: DUF2892; pfam11127" /db_xref="CDD:192708" gene 1234398..1235243 /locus_tag="Alide_1155" /db_xref="GeneID:10103189" CDS 1234398..1235243 /locus_tag="Alide_1155" /inference="protein motif:PFAM:PF01026" /note="PFAM: TatD-related deoxyribonuclease; KEGG: ajs:Ajs_3416 TatD-related deoxyribonuclease" /codon_start=1 /transl_table=11 /product="tatd-related deoxyribonuclease" /protein_id="YP_004125804.1" /db_xref="GI:319761867" /db_xref="GO:0003700" /db_xref="InterPro:IPR001130" /db_xref="InterPro:IPR012278" /db_xref="InterPro:IPR018228" /db_xref="GeneID:10103189" /translation="MIRRMDAWIDTHCHLDEFAVHGGAAHADAERARAARAGVVHCVL PAVDLANLQVVRAMAHRYGDSYALGIHPLYTPQARDDDPQALERMLERCLPDPRLVAV GEIGLDFFVPGLDAARQERFYRAQLQLARRFDLPVILHVRRSADRLLKGLRELPVRGG IAHAFNGSLQQARAFIAMGFKLGFGGAVTYERALQLRRLAAELPLDALVLETDAPDIP PHWLYVTAAERAAGAAPARNSPAELPRIAAVVAGLRGIEVGELARASRDNACAALPKL RALLA" misc_feature 1234419..1235216 /locus_tag="Alide_1155" /note="TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310" /db_xref="CDD:30053" misc_feature order(1234431..1234433,1234437..1234439,1234815..1234817, 1234884..1234886,1235034..1235036) /locus_tag="Alide_1155" /note="active site" /db_xref="CDD:30053" gene 1235318..1235842 /locus_tag="Alide_1156" /db_xref="GeneID:10103190" CDS 1235318..1235842 /locus_tag="Alide_1156" /inference="similar to AA sequence:KEGG:Dtpsy_2749" /note="KEGG: dia:Dtpsy_2749 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125805.1" /db_xref="GI:319761868" /db_xref="GeneID:10103190" /translation="MNALAASRLVGLPPVVGEGTRVLLLGSFPGAASLRAQQYYGHPQ NHFWRILAALWPGHPLPGREDYAARCGWLLARGLGLWDVYAACEREGSLDTSIRNAQV NDFRSLLARVPALAAIAHNGGESFRHARAVRASLGVDIPSLRLPSTSPANASWSFEKK LNAWRDAFVPFGLL" misc_feature 1235348..1235812 /locus_tag="Alide_1156" /note="Uracil DNA glycosylase superfamily; Region: UDG; cl00483" /db_xref="CDD:193838" gene 1235839..1236600 /locus_tag="Alide_1157" /db_xref="GeneID:10103191" CDS 1235839..1236600 /locus_tag="Alide_1157" /inference="similar to AA sequence:KEGG:Dtpsy_2748" /note="KEGG: dia:Dtpsy_2748 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125806.1" /db_xref="GI:319761869" /db_xref="InterPro:IPR019819" /db_xref="GeneID:10103191" /translation="MSRKKTPSPELPEVSVSDDGEVRHLHLGTPWIQGSMRIDDPFAL ELEYVQRMMAWLLFMEPSSVARRHAMQLGLGAGAITKFCRKKLRMCCTVVELNPRVEA VCRAWFKLPPDGPMQRVVLADAAAEIKKPEWHGTVDALAVDLYDHEAAAPVLDSAEFY ADCRALLTGDGCLTVNLFGRASSYERSVAKLAEAFGADALWAFKPTREGNTVVLAQRT PTRPKRAELLARAEGLQARWDLPATKWLRVFKPIA" misc_feature 1235839..1236588 /locus_tag="Alide_1157" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1236605..1238371 /locus_tag="Alide_1158" /db_xref="GeneID:10103192" CDS 1236605..1238371 /locus_tag="Alide_1158" /inference="protein motif:PFAM:PF00437" /note="KEGG: dia:Dtpsy_2747 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="type ii secretion system protein e" /protein_id="YP_004125807.1" /db_xref="GI:319761870" /db_xref="GO:0005524" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR007831" /db_xref="GeneID:10103192" /translation="MSPTHNLAGPLEWRRVVEWLRADGVISAEQAQRTIARCSQAESS QHPLVRLGNVSMVRASDGKPLDVDMLAEYVAQRCGLAFLRIDPLKVDVGRVADAMSAS YAERHKVLPVQVTAKEVVVATAEPFVQDWVAEVERQARRSVRRVLANPLDITRYTAEF YALAKSVREAQKAGGSAGGSSFEQLVELGRTNKQLDANDQGVIRVVDWLWQYAFDQRA SDIHLEPRREQGVIRFRIDGVLHTVYQMPMGVLSAMVARVKLLGRMDVVERRRPQDGR IKTRNPRGDEVEMRLSTLPTAFGEKMVMRIFDPDNAVKDLDALGFTQHDAERWESLVK RPHGIILVTGPTGSGKTTTLYSTLKRVATEEVNVSTVEDPIEMIEPSFNQTQVQPQLD FNFAEGLRALMRQDPDVIMVGEIRDLATADMAVQAALTGHLVFSTLHTNDAPSAVTRL MELGVPPYLINATLLGVLAQRLVRTLCRHCRQLDEAANPEALADMIRPWRLNGGYRAY KPVGCVDCRMTGFRGRMGLYELLTVTEALKQQIHQTPSIDALRRQAVQDGMRPLRLAG ALRAAEGVTTLEEVIAATPPLE" misc_feature 1236797..1237102 /locus_tag="Alide_1158" /note="GSPII_E N-terminal domain; Region: GSPII_E_N; pfam05157" /db_xref="CDD:191212" misc_feature 1236908..1238356 /locus_tag="Alide_1158" /note="general secretory pathway protein E; Region: type_II_gspE; TIGR02533" /db_xref="CDD:131585" misc_feature 1237373..1238176 /locus_tag="Alide_1158" /note="PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129" /db_xref="CDD:29995" misc_feature 1237634..1237657 /locus_tag="Alide_1158" /note="Walker A motif; other site" /db_xref="CDD:29995" misc_feature order(1237637..1237639,1237649..1237657,1237712..1237714, 1237718..1237723,1237841..1237846) /locus_tag="Alide_1158" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29995" misc_feature 1237829..1237846 /locus_tag="Alide_1158" /note="Walker B motif; other site" /db_xref="CDD:29995" gene 1238502..1238990 /locus_tag="Alide_1159" /db_xref="GeneID:10103193" CDS 1238502..1238990 /locus_tag="Alide_1159" /inference="similar to AA sequence:KEGG:Dtpsy_2746" /note="KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125808.1" /db_xref="GI:319761871" /db_xref="GeneID:10103193" /translation="MKIKSQKDFFAGLMFLVVGVAFAWGATTYTVGTGARMGPGYFPL LLGVLQAIIGAAIMFKAVVVETVDGDKVGPWAWKQIVFIIGANLLFGILLAGLPSFGV PAMGLIVAIYGLTFVAALAGHEFHFKEVFILATVLAAGSYVAFVWALNLQFPVWPSFI VG" sig_peptide 1238502..1238573 /locus_tag="Alide_1159" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.501 at residue 24" misc_feature 1238517..1238963 /locus_tag="Alide_1159" /note="Tripartite tricarboxylate transporter TctB family; Region: TctB; pfam07331" /db_xref="CDD:191726" gene 1239007..1240518 /locus_tag="Alide_1160" /db_xref="GeneID:10103194" CDS 1239007..1240518 /locus_tag="Alide_1160" /inference="protein motif:PFAM:PF01970" /note="PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125809.1" /db_xref="GI:319761872" /db_xref="InterPro:IPR002823" /db_xref="GeneID:10103194" /translation="MELLDHLSMGFGVAFTFQNLIYCFIGCLLGTLIGVLPGVGPVAT IAMLLPATYALPPVAALIMLAGIYYGAQYGGSTTAILVNLPGESSSVVTVIDGYQMAR KGRAGPALAAAGIGSFFAGCVGTLILAAFAPPLTEVAFKFGPAEYFSLMVLGLIGAVV LASGSLLKAVAMILLGLLMGLVGTDVNSGVARYSFDIPELTDGINFVVIAMGVFGYGE IIANLSKSDEDREVFTAKVQGLFPTAQDFKRMFPAMLRGTALGSSLGILPGGGALLSA FAAYTVEKKTKLHPGEVPFGQGNIRGVAAPESANNAGSQTSFIPLLTLGIPPNAVMAL MVGAMTIHNIQPGPQVMTSNPELFWGLVASMWIGNAMLVILNLPLIGIWIKLLTVPYR WLFPSIVLFCAIGVYSTNNNTFDVWLVGAFGFVGYLFYKLGVEPAPLLLGFILGPMME ENLRRALLLSRGDWSVFVTRPLSAGLLGAAALLLIIVLLPAVSKKREEAFVED" misc_feature 1239007..1240416 /locus_tag="Alide_1160" /note="Tripartite tricarboxylate transporter TctA family; Region: TctA; cl00772" /db_xref="CDD:153985" gene 1240720..1241550 /locus_tag="Alide_1161" /db_xref="GeneID:10103195" CDS 1240720..1241550 /locus_tag="Alide_1161" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2744 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004125810.1" /db_xref="GI:319761873" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10103195" /translation="MDLGIAGKWALVCGASKGLGRGCAEALVREGVNLVVNARNADEL QRTATCLMAEGAAAAGVRGQNSSKPQVLVVAADITTPEGRAAAFGVAGGPGKGFDIVV TNAGGPPPGDFRGWNRDAWISAVDANMLTPIELIRATVDGMAGRGYGRIVNITSSAVK APIDILGLSNGARSGLTGFVAGVARSAIAARGVTLNNLLPGKFDTDRLAGTIDAAAAK AGRSVDDVRRAQQAAIPAGRYGTPQEFGAICAFLCSVHAGYITGQNILADGGAYPGTF " misc_feature 1240735..1241535 /locus_tag="Alide_1161" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1240738..1241538 /locus_tag="Alide_1161" /note="putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; Region: BKR_like_SDR_like; cd05344" /db_xref="CDD:187602" misc_feature order(1240759..1240761,1240765..1240776,1240831..1240839, 1240945..1240953,1241029..1241037,1241098..1241100, 1241179..1241187,1241224..1241226,1241236..1241238, 1241317..1241328,1241332..1241337) /locus_tag="Alide_1161" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187602" misc_feature order(1241185..1241187,1241224..1241226,1241236..1241238) /locus_tag="Alide_1161" /note="putative active site [active]" /db_xref="CDD:187602" gene 1241550..1242617 /locus_tag="Alide_1162" /db_xref="GeneID:10103196" CDS 1241550..1242617 /locus_tag="Alide_1162" /inference="protein motif:PFAM:PF03480" /note="PFAM: Extracellular solute-binding protein, family 7; KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein, family 7" /protein_id="YP_004125811.1" /db_xref="GI:319761874" /db_xref="InterPro:IPR018389" /db_xref="GeneID:10103196" /translation="MARLGPLLGAALLSAAMQAPAAEPAPQAGAALRLRVVGGLAGIT QYAQLEAPFWTRDLARLSQGRFDADIVPFDRAGVPGMEMLRLLELGVVPFGTVFMSSL SDRYPQYMAADLPGLNPDFAALRRSLAVFRPYLERALREEHGIELLAVYVYPAQVVFC KQPFDGLADLRGRRVRVSSAAQGDFVSALEAHPRHVPFARLAQSMEAGTSECAITGAM PGNAMGLHMYAAYLYPMPISWGMAIFGANGAAWKALPEELRALLRSELPRLETAIWLS AEQETLQGVDCNVGSPRCTTGRRGRMALVPVRPQDEARREDILRTVVLPRWLQRCGAR CADLWNRTMGPARGPAVPAKP" sig_peptide 1241550..1241618 /locus_tag="Alide_1162" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.961 at residue 23" misc_feature 1241709..1242398 /locus_tag="Alide_1162" /note="Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl00710" /db_xref="CDD:153950" gene 1242614..1245277 /locus_tag="Alide_1163" /db_xref="GeneID:10103197" CDS 1242614..1245277 /locus_tag="Alide_1163" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: dia:Dtpsy_2742 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004125812.1" /db_xref="GI:319761875" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="GeneID:10103197" /translation="MTMAPPRRLYLAVWGLAGTLVLGLAAAVAGLLWQTRADGLAAAE ARVTRFAAGAETGMNRTLLSLDMLLASTGELLRVGERSSLDVDGANALLRAMVRQNLM LRHVALFDARGEQLASSAQGQEPPPARLPPGLLATALAPAVATLTVGQPQAAAPGPGQ VLYAARPLRLADGMSLLAVAQVPMDVLVSVLLQGEGAAPEVEVTLERAQGELLMGLQA PWDAPERQGLAAPPLQEMGARGRHTGFWQARARLSGQPALVAARPLLYPDLWITASLP RSTALAAWKQDAAAVGGGALLFGACLVAAGILATVYLRRMHRARQSVAGAKATLDQAV GAMVSGFVLLDPARRIVQWNRPFEEMFPWLAGTVAVGLPYRRVLETTVHYHLPGASAQ DKRAWVERRLQQQRDPKGTHEQCLPNGHFIQITERATPEGGLVILFHDVTDLRLAAAE IEQLAFYDQLTGLSNRRLLLDRLGQACAAAQRAGERGAVLFIDLDYFKTLNDTLGHEM GDQLLQQVARRLQGCVRAGDTVARLGGDEFVVLLAGLPADAAEAALLARGVADKIVHL LGRPYQIAGQTYHGSFSVGATLFGELPQTTAGEVLKQADIAMYQAKAQRGSTLRFFEP SMQAAISERAQLEADLQQAIGMGQFLLHLQPQYDGAGAMVGAESLLRWQHPVHGLVPP ARFIAVAEDSELIVPIGSWVLRGACELLARWRHAPHLRDLSLSVNVSARQFRQDGFAE LVVRLLQDTGAPAHRLELELTESLVLEDVEDSIAKMHRLRVKGVRFAVDDFGTGYSSL SYLTRLPLHRLKIDKSFVHHLGESHSDDVVVQTILGMARNLELEVVAEGVETEAQRAF LARHGCDLYQGYLLARPMPVAQLEAMRLSLG" misc_feature 1243622..1243960 /locus_tag="Alide_1163" /note="PAS fold; Region: PAS_7; pfam12860" /db_xref="CDD:193334" misc_feature 1243979..1244473 /locus_tag="Alide_1163" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1244090..1244092,1244219..1244221) /locus_tag="Alide_1163" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1244105..1244107,1244114..1244119,1244129..1244131, 1244141..1244143,1244207..1244209,1244213..1244224) /locus_tag="Alide_1163" /note="active site" /db_xref="CDD:143635" misc_feature order(1244195..1244197,1244297..1244299) /locus_tag="Alide_1163" /note="I-site; other site" /db_xref="CDD:143635" misc_feature 1244525..1245247 /locus_tag="Alide_1163" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(1245300..1246202) /locus_tag="Alide_1164" /db_xref="GeneID:10103198" CDS complement(1245300..1246202) /locus_tag="Alide_1164" /inference="protein motif:PFAM:PF00892" /note="KEGG: ajs:Ajs_3406 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125813.1" /db_xref="GI:319761876" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10103198" /translation="MTQRLQPGTIAMLVAAPLLWAGNAVVGRALHALISPSALNFIRW LLAFALLLPLAWRVLRPGSTLWPHWRRYALLGLFGIGSYNALQYLALQTSTPLNVTLV GSGMPVWMLIVGALFFGVPATRRQIAGVLLSVAGVLLVLSRGSWQQLLALRLVPGDLY MVLATISWAFYSWLLVRTTEPRDLRGDWAAFLMAQMVFGLGWSGAFAGVEWSLGQAQA HWGWPLAAGLAFIAIGPAVLAYRFWGAGVQRAGPVMGGFFINLTPLFAAVLSAAFLGE RPQLYHAAAFALIVGGIVVSSRRA" sig_peptide complement(1246137..1246202) /locus_tag="Alide_1164" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.699) with cleavage site probability 0.599 at residue 22" misc_feature complement(1245822..1246151) /locus_tag="Alide_1164" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" misc_feature complement(1245309..>1245545) /locus_tag="Alide_1164" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene 1246308..1247294 /locus_tag="Alide_1165" /db_xref="GeneID:10103199" CDS 1246308..1247294 /locus_tag="Alide_1165" /inference="protein motif:PFAM:PF00107" /note="PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dia:Dtpsy_2740 alcohol dehydrogenase zinc-binding domain protein" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase zinc-binding domain protein" /protein_id="YP_004125814.1" /db_xref="GI:319761877" /db_xref="GO:0008270" /db_xref="GO:0016491" /db_xref="InterPro:IPR002364" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="GeneID:10103199" /translation="MTLAVQIRQHGGPEELQIVDVQVGDPGPGEVRIRHHAVGLNFID VYHRTGLYPLSMPAGIGMEAAGVIEAVGEGVTHLKAGDRAAYASQPPGSYCEVRVMPA KCVCRLPDAIGFETGAAMMLKGLTAQYLLKKARPVEGLEPGDYVLFHAAAGGVGLIAC QWARTLGLRLIGTAGSDAKCQLVLDNGAAHAINYAKEDFAARVKEITGGKGVKVVYDS VGKDTWDKSLDCLRPFGLMASFGNASGPVPPFAPGMLGAKGSLYVTRQTLFSHIATRE ATQAMADDLFAVVESGQVKIHIAQRYALTDVQQAHRDLEARKTTGSTILTLP" misc_feature 1246308..1247282 /locus_tag="Alide_1165" /note="quinone oxidoreductase, NADPH-dependent; Provisional; Region: PRK10754" /db_xref="CDD:182701" misc_feature 1246317..1247285 /locus_tag="Alide_1165" /note="Quinone oxidoreductase (QOR); Region: QOR2; cd05286" /db_xref="CDD:176189" misc_feature order(1246428..1246433,1246443..1246445,1246671..1246673, 1246683..1246685,1246692..1246694,1246755..1246757, 1246764..1246772,1246827..1246832,1246842..1246844, 1246887..1246889,1246959..1246964,1247025..1247039, 1247100..1247111,1247250..1247252,1247256..1247258) /locus_tag="Alide_1165" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176189" misc_feature order(1246707..1246709,1247004..1247009,1247046..1247063, 1247085..1247108,1247115..1247120) /locus_tag="Alide_1165" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176189" gene 1247291..1248109 /locus_tag="Alide_1166" /db_xref="GeneID:10103200" CDS 1247291..1248109 /locus_tag="Alide_1166" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3404 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="nudix hydrolase" /protein_id="YP_004125815.1" /db_xref="GI:319761878" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="GeneID:10103200" /translation="MTAATAPAWVAAARARATCGPAAPRTPLLLGGERVGSVDAEVFA KIDFKCLLYERYQLSIVEHEGAPAWALPAGEDATAALNALARALRAAGRCGPWRDEQL AVCGADGRRLATVERGAVRVLGLATQAVHLVGCTADGAMWVQQRAFDKPNNPGMWDTL MGGMVSAADSLASAVERETWEEAGLRVAALQGVAHSGHVEFAQPSDEAGGCGYMVERI DWFRAQVPEGMAPVNQDGEVARFELLPRTALLERLARGAFTPEASLILAAALGW" misc_feature 1247579..1248100 /locus_tag="Alide_1166" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or...; Region: Nudix_Hydrolase; cl00447" /db_xref="CDD:189099" misc_feature order(1247777..1247785,1247813..1247839) /locus_tag="Alide_1166" /note="nudix motif; other site" /db_xref="CDD:72880" gene complement(1248063..1249004) /locus_tag="Alide_1167" /db_xref="GeneID:10103201" CDS complement(1248063..1249004) /locus_tag="Alide_1167" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3178 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125816.1" /db_xref="GI:319761879" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103201" /translation="MNVTLRQLQVFLSVAATRNFSRTGDQVGLTQPAVSRSITELEAQ LGLQLLNRTTREVDLTDAGRSLAARLPRVLEDLEATLLDVQGMSTALHGRVRVASSPT LSANLLPDCIARCQRELPGVQVMLLDRVQNDVLSSVLSGEVDFGVVIDPGDREALHCE PIYTEPFGLACPPAHRLARRRQVRWTDLADEPLVLLDHASGSRRLIDRALAAQGVQAR VAQEVGHATTIFRMLDAGLGVSVIPMLALPPEGLPRLAIRPLLPRVDRDIVLVHRRNR ALAPLAQRVWDLVRDVAHARQRITSPAPRPGSGSPQA" misc_feature complement(1248111..1248995) /locus_tag="Alide_1167" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1248813..1248992) /locus_tag="Alide_1167" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1248138..1248725) /locus_tag="Alide_1167" /note="TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440" /db_xref="CDD:176131" misc_feature complement(order(1248300..1248305,1248309..1248314, 1248330..1248347,1248621..1248641,1248645..1248647, 1248657..1248659,1248666..1248671,1248675..1248680)) /locus_tag="Alide_1167" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176131" gene 1249119..1250084 /locus_tag="Alide_1168" /db_xref="GeneID:10103202" CDS 1249119..1250084 /locus_tag="Alide_1168" /inference="protein motif:PFAM:PF01758" /note="KEGG: dia:Dtpsy_2738 hypothetical protein; manually curated; PFAM: Bile acid:sodium symporter" /codon_start=1 /transl_table=11 /product="bile acid:sodium symporter" /protein_id="YP_004125817.1" /db_xref="GI:319761880" /db_xref="GO:0008508" /db_xref="InterPro:IPR002657" /db_xref="InterPro:IPR016833" /db_xref="GeneID:10103202" /translation="MARSRLLPDNFTLALVATVVLASVLPASGTVGAFFEKATVAVVA LLFFMHGAKLSREAVLAGLGHWRLHVLVVASTFALFPLLGWGLRPVLQPLVTPELYTG VLFLCVLPATVQSAIAFTAVARGNMAAAICSASASTLLGIVITPLLVGLVLPHTGTAQ QDVLGSIGRIMLQLLLPFVAGHLLRPWIGGFIARHAAALKFVDQGSVLLVVYTAFSAA VVAGLWRQLPLPALAGLLVVCAVILGAALTATTWLARRLGFPKEDEITIVFCGSKKSL VSGVPMAKVLFASQAAGAIVLPLMVFHQMQLMVCAVLAQRYARRG" sig_peptide 1249119..1249208 /locus_tag="Alide_1168" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.842) with cleavage site probability 0.669 at residue 30" misc_feature 1249203..1250081 /locus_tag="Alide_1168" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene complement(1250094..1251761) /locus_tag="Alide_1169" /db_xref="GeneID:10103203" CDS complement(1250094..1251761) /locus_tag="Alide_1169" /inference="protein motif:TFAM:TIGR00704" /note="KEGG: aav:Aave_3461 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein" /codon_start=1 /transl_table=11 /product="na/pi-cotransporter ii-related protein" /protein_id="YP_004125818.1" /db_xref="GI:319761881" /db_xref="InterPro:IPR003841" /db_xref="InterPro:IPR004633" /db_xref="InterPro:IPR008170" /db_xref="InterPro:IPR017441" /db_xref="GeneID:10103203" /translation="MKHLLNLLAAIALLVWGTHLVRVGVLRVFGANLRSLLARSMGNR FTAALSGIGVTALVQSSTATSLMTASFVGQGLIALPAALAVMRGADIGTALMAVLFST DLSWLSPLFIFVGVVLYLSRQETTSGRVGRVLIGLGLMLLALERVTQATEPMMASPIT HVVLESMGSDVFAEILIGAVLAIVSYSSLAVVLLIAAMADTSVVPLDMALGMVLGANL GNGLTAMLTMAKSSVEVRQVTVGNMVFKLMGVVLMAPFIDGWIRFVQPHLPATSHSVV LFHLAYNIIISVGFIGLTQWVAHVMTRLLPPLDPAKNPLRPHHLDPSALATPSLAISC AAREALHQADLVETMLNGLKTVWQTDDQRLAAELRAMDDQVDSLYSAIKYYMTKISRS SLDENEGRRWTEIISFTINMEQIGDLVERVLQDVEDKKIKKGRKFSHAGLQEINEMHD HLVANLRLAMSVFLTSNARDAQKLLEEKTRFRELELAYSATHLNRLADNTIQSIETSS LHIDIISDLKRINSLLCSVAYPVLEANASIRPLQSQGEAAAPQGERQ" misc_feature complement(1250157..1251719) /locus_tag="Alide_1169" /note="Na+/phosphate symporter [Inorganic ion transport and metabolism]; Region: NptA; COG1283" /db_xref="CDD:31474" misc_feature complement(1251384..1251719) /locus_tag="Alide_1169" /note="Na+/Pi-cotransporter; Region: Na_Pi_cotrans; pfam02690" /db_xref="CDD:190392" misc_feature complement(<1251084..1251275) /locus_tag="Alide_1169" /note="Na+/Pi-cotransporter; Region: Na_Pi_cotrans; pfam02690" /db_xref="CDD:190392" misc_feature complement(1250484..1250735) /locus_tag="Alide_1169" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" misc_feature complement(1250178..1250429) /locus_tag="Alide_1169" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" gene complement(1251784..1252623) /locus_tag="Alide_1170" /db_xref="GeneID:10103204" CDS complement(1251784..1252623) /locus_tag="Alide_1170" /inference="protein motif:PFAM:PF00149" /note="PFAM: metallophosphoesterase; KEGG: vap:Vapar_1261 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004125819.1" /db_xref="GI:319761882" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10103204" /translation="MNSTPYTFLVQITDLHIREPGRLAYGRIDTAPYLRRTVDSVLAL RQKPDAVVITGDLSDFGREAEYAHLAGLLAPLGDLPVYLLPGNHDERAQLRRSFARHA YLQGGGEFVQYSVRVGPLRLIALDTVEPGQSHGTLCAQRLAWLERELAACRDEPVVIA MHHPPFRTLIGHMDRIGLLEGAAQFEAIVARHANVERIICGHLHRAIDVRFGGTIAST CPAPGHQVALDLQPDAPSAWMLEPPAFRVHAWDGQRLVSHLAAAGIFEGPYPFHENGM LID" misc_feature complement(1251868..1252599) /locus_tag="Alide_1170" /note="Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain; Region: MPP_GpdQ; cd07402" /db_xref="CDD:163645" misc_feature complement(1252009..1252599) /locus_tag="Alide_1170" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature complement(order(1251952..1251954,1252012..1252014, 1252018..1252020,1252138..1252140,1252360..1252365, 1252447..1252449,1252456..1252458,1252576..1252578, 1252582..1252584)) /locus_tag="Alide_1170" /note="active site" /db_xref="CDD:163645" misc_feature complement(order(1252012..1252014,1252018..1252020, 1252138..1252140,1252363..1252365,1252456..1252458, 1252576..1252578,1252582..1252584)) /locus_tag="Alide_1170" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163645" misc_feature complement(order(1251871..1251873,1251877..1251879, 1251886..1251888,1251973..1251975,1251979..1251987, 1251994..1252008,1252027..1252029,1252033..1252035, 1252117..1252122,1252126..1252128,1252411..1252413, 1252438..1252440,1252447..1252449,1252504..1252509, 1252516..1252521,1252528..1252530,1252537..1252539)) /locus_tag="Alide_1170" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:163645" gene complement(1252620..1253681) /locus_tag="Alide_1171" /db_xref="GeneID:10103205" CDS complement(1252620..1253681) /locus_tag="Alide_1171" /inference="protein motif:PFAM:PF00005" /note="KEGG: vap:Vapar_1262 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125820.1" /db_xref="GI:319761883" /db_xref="GO:0005215" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013611" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103205" /translation="MELERIPVEIDHCSKTYADGTRGLQPTSLHVEPGEVLALLGPSG CGKTTLLRLIAGLETLDPGGRILFGEQDVTHRPVEQRGVGMVFQSYALFPQMSVAANI GYGLRIRGVSAAEERRAVGELVELTRLTGLEAKRPGELSGGQRQRVALARAVAVRPRV LLLDEPLAALDAKLKEQLREELAELLRRLHITAIHVTHDQQEAMAIADRLAVMRAGSI VQVGHGEDLYRAPAHPFVAEFLGRVNRIERSPESLARGVLTIGGATLTCPPALDQSAL LVRPEDIQIGPRQDGWGVARVEQRSFLGDRVQLRLSAAGVPGTLLADAARDTPYRSGD EVGIRIDPQRLMSTAEASA" misc_feature complement(1252647..1253660) /locus_tag="Alide_1171" /note="ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842" /db_xref="CDD:33633" misc_feature complement(1252959..1253660) /locus_tag="Alide_1171" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1253538..1253561) /locus_tag="Alide_1171" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1253088..1253090,1253187..1253192, 1253418..1253420,1253535..1253543,1253547..1253552)) /locus_tag="Alide_1171" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1253418..1253429) /locus_tag="Alide_1171" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1253235..1253264) /locus_tag="Alide_1171" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1253187..1253204) /locus_tag="Alide_1171" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1253169..1253180) /locus_tag="Alide_1171" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1253082..1253102) /locus_tag="Alide_1171" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature complement(1252647..1252856) /locus_tag="Alide_1171" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene complement(1253671..1254471) /locus_tag="Alide_1172" /db_xref="GeneID:10103206" CDS complement(1253671..1254471) /locus_tag="Alide_1172" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1263 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125821.1" /db_xref="GI:319761884" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103206" /translation="MRQPTHNRAPFLFAVTALTSLFMIAPMLLSVLAGLVNNYSVGIK SGFTLRWLQEVWDVYGGTVGWSLGIAAASVAATAAIGVPCAYALARSRSRLARAFEEL LTLPVAVPGLATALALILAYGQIAAFRQSFAFILVGHIVFTLPFMVRTVASAFQRNDL VALEEAARTLGASFPQRFLGVLVPAVFPAIVAGGLMVFTLSVGEFNLTWMLHTPLTRT LPVGLADSYASMRIEIGSAYTLVFFIVILPVLWALQALAQLMQKRYGT" misc_feature complement(1253719..1254471) /locus_tag="Alide_1172" /note="ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177" /db_xref="CDD:31370" sig_peptide complement(1254370..1254471) /locus_tag="Alide_1172" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.924 at residue 34" misc_feature complement(1253722..1254234) /locus_tag="Alide_1172" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1253722..1253727,1253734..1253739, 1253746..1253751,1253755..1253760,1253767..1253772, 1253800..1253805,1253842..1253847,1253854..1253865, 1253884..1253886,1253893..1253898,1253938..1253940, 1253989..1253991,1254001..1254006,1254016..1254018, 1254022..1254027,1254034..1254036,1254040..1254042, 1254046..1254051,1254115..1254117,1254121..1254126, 1254133..1254162,1254166..1254177,1254205..1254207, 1254220..1254225,1254232..1254234)) /locus_tag="Alide_1172" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1253848..1253865,1254115..1254159)) /locus_tag="Alide_1172" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1253770..1253772,1253800..1253802, 1253809..1253811,1253845..1253847,1254055..1254057, 1254115..1254117)) /locus_tag="Alide_1172" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1253917..1253919,1253929..1253934, 1253950..1253988)) /locus_tag="Alide_1172" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1254497..1255306) /locus_tag="Alide_1173" /db_xref="GeneID:10103207" CDS complement(1254497..1255306) /locus_tag="Alide_1173" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1264 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125822.1" /db_xref="GI:319761885" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103207" /translation="MSPRQRLLLAGCAAPASAFFLAFWLLPVLRLLALPAEKGWGTYF VVLTDGRYMESMLNTVLLSVAVTLATLVIGATVGIYLARRSFFGKRLLLALLTLPLSF PGVIIGFFVILLGGRQGLVADLSSQLFGERITFAYGLLGLFLAYLYFSLPRAIATYAA AAEAMDLQLEEAARSLGASRLRIVRDVWLPELAPTTVACGAILFATSMGAFGTAFTLA SKFEVVPITIYNEFTNYANFALAASLSIALGLVTWLALFLTRQFGSGQAMR" sig_peptide complement(1255205..1255306) /locus_tag="Alide_1173" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.919) with cleavage site probability 0.705 at residue 34" misc_feature complement(1254617..1255090) /locus_tag="Alide_1173" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene complement(1255303..1256316) /locus_tag="Alide_1174" /db_xref="GeneID:10103208" CDS complement(1255303..1256316) /locus_tag="Alide_1174" /inference="protein motif:PFAM:PF01547" /note="PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1265 extracellular solute-binding protein family 1" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_004125823.1" /db_xref="GI:319761886" /db_xref="GO:0005215" /db_xref="InterPro:IPR006059" /db_xref="GeneID:10103208" /translation="MTSTLQRFARIGVLAAAGLAATGAWAQTAICYNCPTEWADWGTQ LRAIKARTGITVPADNKNSGQALAQLVAEKGSPVADVTYLGVTFAIQAQKDGVVAPYQ PAGWKDIPDGMKDPAGNWFSIHSGTLGFMVNVDALKGKPVPKSWADLLKPDYKGLIGY LDPASAFVGYVGAVAVNEARGGTLANFAPAIDYFKALQKNEPIVPKQTSYARVLSGEI AILLDYDFNAYRAKYKDRANVQFVIPAEGTVVVPYVMSLVNKAPHPAEARKVLDFVLS DEGQAIWAKAYLRPVRAGAMPKEVQAQFLPASEYARAKTVDYAGMAAAQRDFSDRYLK EVR" sig_peptide complement(1256236..1256316) /locus_tag="Alide_1174" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 27" misc_feature complement(1255306..1256184) /locus_tag="Alide_1174" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1256356..1257378) /locus_tag="Alide_1175" /db_xref="GeneID:10103209" CDS complement(1256356..1257378) /locus_tag="Alide_1175" /inference="protein motif:PFAM:PF00532" /note="KEGG: vap:Vapar_1266 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI" /codon_start=1 /transl_table=11 /product="periplasmic binding protein/laci transcriptional regulator" /protein_id="YP_004125824.1" /db_xref="GI:319761887" /db_xref="GO:0003700" /db_xref="InterPro:IPR000843" /db_xref="InterPro:IPR001761" /db_xref="GeneID:10103209" /translation="MPKEPLNIHNVATRAGVSAATVSRAFNFPDKVAPATRDLVERAA RELGYQPNASARTLRTQRSRVLGVVLPTLLNPVFAECLQGISQAAAASGYAIVPVMTS YEETQEQQAVAQLLAANVDGMILVVSSPSDSRALERLRGAGLPYVLAYNAHPGHPCIS VDGEAASAEAVARLAALGHRRIAMVSGTLAASDRAQQRYRGYLRGMAAAGLQAPPLVE VPFVATAVEALSRYLQTPTRPTALFCSNDLLAIRSMRAARLTGLSVPQDLAVMGFDGI AIGQDLTPALSTIAQPNHDIGRHGVELLVQSIARGSPPGAGDSLCLPYRFCGGESCAA AAGPAA" misc_feature complement(1256383..1257360) /locus_tag="Alide_1175" /note="Transcriptional regulators [Transcription]; Region: PurR; COG1609" /db_xref="CDD:31797" misc_feature complement(1257199..1257348) /locus_tag="Alide_1175" /note="Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392" /db_xref="CDD:143331" misc_feature complement(order(1257202..1257207,1257211..1257216, 1257223..1257225,1257232..1257234,1257271..1257273, 1257280..1257285,1257298..1257300,1257307..1257312, 1257316..1257330)) /locus_tag="Alide_1175" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature complement(1257205..1257234) /locus_tag="Alide_1175" /note="domain linker motif; other site" /db_xref="CDD:143331" misc_feature complement(1256386..1257186) /locus_tag="Alide_1175" /note="Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011" /db_xref="CDD:195943" gene complement(1257471..1257968) /locus_tag="Alide_1176" /db_xref="GeneID:10103210" CDS complement(1257471..1257968) /locus_tag="Alide_1176" /EC_number="3.4.23.36" /inference="protein motif:TFAM:TIGR00077" /note="TIGRFAM: lipoprotein signal peptidase; KEGG: dia:Dtpsy_2736 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II" /codon_start=1 /transl_table=11 /product="lipoprotein signal peptidase" /protein_id="YP_004125825.1" /db_xref="GI:319761888" /db_xref="GO:0004190" /db_xref="InterPro:IPR001872" /db_xref="GeneID:10103210" /translation="MARGNGNGRASLWPWLAWAVLLVIADQFTKTLILGYYRLGDATY VTSFFNIVRAHNTGAAFSFLADAGGWQRWLFTGIAVATAAFILWQLRAHPGQKLFCFA LSSILGGAIGNVVDRLQHGYVVDFLDFHLRGWHFPAFNVADAAITVGAACLILDELLR VRRER" misc_feature complement(1257492..1257893) /locus_tag="Alide_1176" /note="Signal peptidase (SPase) II; Region: Peptidase_A8; cl00458" /db_xref="CDD:187899" gene complement(1257968..1260823) /locus_tag="Alide_1177" /db_xref="GeneID:10103211" CDS complement(1257968..1260823) /locus_tag="Alide_1177" /inference="protein motif:TFAM:TIGR00392" /note="KEGG: dia:Dtpsy_2735 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="isoleucyl-tRNA synthetase" /protein_id="YP_004125826.1" /db_xref="GI:319761889" /db_xref="GO:0000166" /db_xref="GO:0004822" /db_xref="GO:0005524" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002300" /db_xref="InterPro:IPR002301" /db_xref="InterPro:IPR010663" /db_xref="InterPro:IPR013155" /db_xref="InterPro:IPR015905" /db_xref="GeneID:10103211" /translation="MSESAPKNAPASAYRATLNIPDTPFPMRGDLPKREPLWVKEWDE QGTYKKLRDARRGAPKFILHDGPPYANGQIHIGHAVNKILKDMIVKARQLEGFDALYT PGWDCHGLPIENAIEKLHGRNLPRDEMQARGRAFATEQIAQQMVDFKRLGVLGEWDNP YKTMNYASEAGELRALKKVMERGFVYRGLKPVYWCFDCGSSLAEFEIEYQDKQSQTLD VMFPAADPEKLAAAFGLPALSKPAFAVIWTTTAWTIPANQALNVNPELEYSLVDTERG LLVVASALVEKCLERWGIAGRAVATAKGEKLDHINFRHPLAHVDKGYDRLSPVYLADY ATAEDGTGIVHSSPAYGVDDFQSCVANGLKYEDILNPVQGNGQYAQDFPLFGGQPIWK AVPVIIDALKVAGRLMGTSGITHSYPHCWRHKSPVIYRAAAQWFVRMDEGEGVFTDPA QKPAKTLRQIALEAIEHTRFYPENGKARLRDMIAGRPDWCISRQRSWGVPIPFFLHQD SGELHPRTMEIIDQAADIVERGGIEAWSRVTAEEILGAEDAKHYTKSTDILEVWFDSG STFWHVMRGTHAGMHHDEGPEADLYLEGHDQHRGWFHSSLLLASAIFGRAPYRGLLTH GFTVDGQGKKMSKSLGNTVSPQQVSGKLGAEIIRLWCAATDYSGDLAIDDKILARVVD AYRRIRNTLRFLLANVSDFDPATDAVPFGEMLEIDRYALTRAAELQQDILAHYKVYEF HPVVARLQLYCSEDLGGFYLDVLKDRLYTTAAKSPARRSAQTALYQITHAMLRWMAPF LSFTAEEAWKIFGQSESIYLETYQTIPAADEALLAKWERLRQIRDAVNKEIENVRAAG TVGSSLQAAVTLAAAPEDHELLASLGDDLKFVFIVSTITLIAGSALQISVTASSDEKC ERCWHYRADVGADTAHPTLCGRCTSNLYGAGEPRAHA" misc_feature complement(1257995..1260784) /locus_tag="Alide_1177" /note="isoleucyl-tRNA synthetase; Reviewed; Region: ileS; PRK05743" /db_xref="CDD:180231" misc_feature complement(<1260242..1260649) /locus_tag="Alide_1177" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(1260590..1260601) /locus_tag="Alide_1177" /note="active site" /db_xref="CDD:173912" misc_feature complement(1260590..1260601) /locus_tag="Alide_1177" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature complement(order(1260590..1260592,1260599..1260601)) /locus_tag="Alide_1177" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(1258808..>1259548) /locus_tag="Alide_1177" /note="catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818" /db_xref="CDD:173909" misc_feature complement(order(1258817..1258819,1258913..1258930, 1258940..1258954,1259021..1259023,1259027..1259029, 1259033..1259047,1259129..1259131,1259138..1259140, 1259390..1259392)) /locus_tag="Alide_1177" /note="active site" /db_xref="CDD:173909" misc_feature complement(1258910..1258924) /locus_tag="Alide_1177" /note="KMSKS motif; other site" /db_xref="CDD:173909" misc_feature complement(1258286..1258810) /locus_tag="Alide_1177" /note="Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_BEm; cd07960" /db_xref="CDD:153414" misc_feature complement(order(1258286..1258288,1258295..1258297, 1258532..1258534,1258541..1258543,1258553..1258555, 1258568..1258570,1258577..1258582,1258589..1258594, 1258601..1258603,1258745..1258750,1258757..1258759, 1258766..1258768,1258778..1258780,1258787..1258789, 1258799..1258801)) /locus_tag="Alide_1177" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153414" misc_feature complement(order(1258748..1258750,1258757..1258759)) /locus_tag="Alide_1177" /note="anticodon binding site; other site" /db_xref="CDD:153414" misc_feature complement(<1258049..>1258369) /locus_tag="Alide_1177" /note="CRISPR/Cas system-associated DinG family helicase Csf4; Region: Csf4_U; cl09250" /db_xref="CDD:187934" misc_feature complement(1258004..1258090) /locus_tag="Alide_1177" /note="Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827" /db_xref="CDD:148438" gene complement(1260914..1261960) /locus_tag="Alide_1178" /db_xref="GeneID:10103212" CDS complement(1260914..1261960) /locus_tag="Alide_1178" /inference="protein motif:TFAM:TIGR00083" /note="KEGG: ajs:Ajs_3398 bifunctional riboflavin kinase/FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein ribf" /protein_id="YP_004125827.1" /db_xref="GI:319761890" /db_xref="GO:0003919" /db_xref="GO:0008531" /db_xref="InterPro:IPR002606" /db_xref="InterPro:IPR015864" /db_xref="InterPro:IPR015865" /db_xref="GeneID:10103212" /translation="MKIFRGFHHPQVAPACALTIGNFDGVHRGHQAMLALLNNEAEHR GVQSCVLTFEPHPRDYFAGLHRRPELAPARIGTLRDKLSELARCGVQQTVVLPFNERL ACQSPQAFIEDVVVRGLGARYLLVGDDFRFGSQRAGDYAMLDAAGPAHGFEVARMNSY EVHGLRVSSTAVREALAAGDMQEAARLLGRPYAISGHVVHGRKLGRQLGRSAASGAHQ DGFRTLNLRFAHWKPAASGIFAVLVHGLHDQPLPGVANLGVRPSLDPRDVNGGRVLLE THCLDWPAHLGAEGAYGKIIRVELLHKLHDELKYDSLAALTAGIAKDCEDARAYFAST QHAETRRQTTRDRI" misc_feature complement(1260962..1261957) /locus_tag="Alide_1178" /note="bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627" /db_xref="CDD:180171" misc_feature complement(1261358..1261915) /locus_tag="Alide_1178" /note="FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064" /db_xref="CDD:185679" misc_feature complement(order(1261454..1261462,1261484..1261486, 1261574..1261576,1261871..1261873,1261880..1261882, 1261889..1261900)) /locus_tag="Alide_1178" /note="active site" /db_xref="CDD:185679" misc_feature complement(1260965..1261402) /locus_tag="Alide_1178" /note="Riboflavin kinase; Region: Flavokinase; pfam01687" /db_xref="CDD:190069" gene 1262114..1262671 /locus_tag="Alide_1179" /db_xref="GeneID:10103213" CDS 1262114..1262671 /locus_tag="Alide_1179" /inference="protein motif:PFAM:PF01844" /note="KEGG: dia:Dtpsy_2733 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease" /codon_start=1 /transl_table=11 /product="hnh endonuclease" /protein_id="YP_004125828.1" /db_xref="GI:319761891" /db_xref="GO:0003676" /db_xref="GO:0004519" /db_xref="InterPro:IPR002711" /db_xref="InterPro:IPR003615" /db_xref="GeneID:10103213" /translation="MKVLKLSAQGLPQSWISLEQAVTHYAAGEVRWEIGAQVALFRGG HNAITGEQSQIAVSSIIGTRGVPHINPFDLRPSLTNAKLFVRDRNICAYCGGHFPEHE LTREHIVPYASQGADHWMNVVTACRSCNHRKGPRTPEQARMPLLYAPYVPSLWEDFIL RNRRILADQMEFLMAHVPKSSRLLS" misc_feature 1262354..1262515 /locus_tag="Alide_1179" /note="HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins...; Region: HNHc; cd00085" /db_xref="CDD:28969" misc_feature order(1262423..1262425,1262429..1262437,1262441..1262443, 1262474..1262479,1262489..1262494,1262501..1262503, 1262513..1262515) /locus_tag="Alide_1179" /note="active site" /db_xref="CDD:28969" gene complement(1262726..1263841) /locus_tag="Alide_1180" /db_xref="GeneID:10103214" CDS complement(1262726..1263841) /locus_tag="Alide_1180" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2732 acyl-CoA dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004125829.1" /db_xref="GI:319761892" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10103214" /translation="MDFDFSDDQQSLRDAVRKWVDKGYAFERRRAIVAAGGFDRAAWG ELAELGLTALTVPEAYGGLDQGPIDAMVAMEELGRGIVLEPLAQAFIAAGVLSQHAPE AVQAAWLPRIAGGEALVVLAHQERKARYRLDVCEAGAGKTPTGHALTATKSIVPAGDQ ADAFLVPAKLDGRIALFLVERNAGGVATRGYGTQDGSRAAEVRLAPAPATLVAADGLA ALELAVDIGIAAACAYAVGVMEQTCAVTFDYLNQRRQFGVPIASFQALRHRAADMKMQ LELARSMSYYASLKLGAPRDERRRALSRAKVQLGQSMRFVGQQAVQLHGGIGVTDEYI VSHYFKTLTQLEMTWGDTLHHLGEVSARMQDTAGVFA" misc_feature complement(1262759..1263838) /locus_tag="Alide_1180" /note="pimeloyl-CoA dehydrogenase, small subunit; Region: pimD_small; TIGR03203" /db_xref="CDD:132247" misc_feature complement(1262765..1263823) /locus_tag="Alide_1180" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature complement(order(1262783..1262785,1262789..1262791, 1262795..1262803,1263374..1263376,1263380..1263382, 1263473..1263475,1263479..1263481,1263569..1263571)) /locus_tag="Alide_1180" /note="active site" /db_xref="CDD:173838" gene complement(1263856..1265037) /locus_tag="Alide_1181" /db_xref="GeneID:10103215" CDS complement(1263856..1265037) /locus_tag="Alide_1181" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2731 acyl-CoA dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004125830.1" /db_xref="GI:319761893" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10103215" /translation="MDLAFTPEEQAFREEVRAWVRANLPAHIAHKVHNALRLTREDMQ GWARILGKKGWLAFGWPKQFGGPGWTAVQKHLFEEECAMAGAPRIIPFGPVMVAPVIM AYGTPEQQKRFLPGIASGDVWWSQGYSEPGSGSDLASLKTRAERKGDKYIVNGQKTWT TLGQYGDWMFNLVRTSSEGKPQTGISFLLIDMKSPGVTVRPIRLLDGECEVNEVFFDN VEVPADQLIGEENKGWTYAKLLLSHERTNIADVNRSKRELERLKRIAKAEGLWDDQRF RDQIALLEVDIVALEMLVLRVLSAEKSGKNPLDIAGLLKIKGSEIQQRYAELMMLASG PFALPLIQEAMDAGWQGDFPGGAPANAPLASTYFNLRKTTIYGGSNEVQRNIVAQTVL G" misc_feature complement(1263859..1265034) /locus_tag="Alide_1181" /note="pimeloyl-CoA dehydrogenase, large subunit; Region: pimC_large; TIGR03204" /db_xref="CDD:132248" misc_feature complement(1263859..1265019) /locus_tag="Alide_1181" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(1263895..1263897,1263901..1263903, 1263907..1263915,1264555..1264557,1264561..1264563, 1264654..1264656,1264660..1264662,1264750..1264752)) /locus_tag="Alide_1181" /note="active site" /db_xref="CDD:173838" gene complement(1265083..1265772) /locus_tag="Alide_1182" /db_xref="GeneID:10103216" CDS complement(1265083..1265772) /locus_tag="Alide_1182" /inference="protein motif:PFAM:PF04337" /note="PFAM: protein of unknown function DUF480; KEGG: ctt:CtCNB1_0874 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125831.1" /db_xref="GI:319761894" /db_xref="InterPro:IPR007432" /db_xref="GeneID:10103216" /translation="MPFDPRQQPLAPVQARVLATLLEKARTVPDSYPLTLNALVTGCN QKTSRDPVMQIADAEAQEALEGLRRMSLAVEINSQRATRWEHNFPRGVGVPEQSAVLL GLLMLRGPQTAGELRINAERWHRFADISSVEAFLEELQERGDEKGGPLVVLLPRAPGA REPRWAHLLCGPVDVQALQAAAGAGAPAGPALQARVEALEAEVAALQATVRRLCAELG IDAPLSPPGQG" misc_feature complement(1265296..1265745) /locus_tag="Alide_1182" /note="Protein of unknown function, DUF480; Region: DUF480; cl01209" /db_xref="CDD:174583" gene 1265793..1266374 /locus_tag="Alide_1183" /db_xref="GeneID:10103217" CDS 1265793..1266374 /locus_tag="Alide_1183" /inference="protein motif:TFAM:TIGR00639" /note="KEGG: dac:Daci_5372 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase" /protein_id="YP_004125832.1" /db_xref="GI:319761895" /db_xref="GO:0004644" /db_xref="InterPro:IPR001555" /db_xref="InterPro:IPR002376" /db_xref="InterPro:IPR004607" /db_xref="GeneID:10103217" /translation="MKNIVILISGGGSNMAAIVRTAQQQDWARTLGARVAAVVSNKAD AKGLAFAREQGIATEVLDHRAFDSREAFDAALAEVIDRHDPAVVVLAGFMRILTPGFV ARYAGRLVNIHPSLLPAFTGLHTHQRAIDAGCKFAGCTVHLVTAELDVGPILEQAVVP VLAGDTADTLAARVLTQEHVIYSRAVAGLLQKQ" misc_feature 1265793..1266365 /locus_tag="Alide_1183" /note="phosphoribosylglycinamide formyltransferase; Reviewed; Region: purN; PRK05647" /db_xref="CDD:180182" misc_feature 1265799..1266353 /locus_tag="Alide_1183" /note="Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Region: FMT_core_GART; cd08645" /db_xref="CDD:187714" misc_feature order(1265814..1265816,1265829..1265837,1266060..1266083, 1266096..1266098,1266123..1266134,1266156..1266158, 1266216..1266218,1266222..1266227,1266234..1266239, 1266324..1266326) /locus_tag="Alide_1183" /note="active site" /db_xref="CDD:187714" misc_feature order(1265829..1265834,1266063..1266068,1266126..1266128, 1266132..1266134,1266324..1266326) /locus_tag="Alide_1183" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187714" misc_feature order(1266060..1266062,1266069..1266071,1266075..1266083, 1266096..1266098,1266123..1266125,1266222..1266227, 1266234..1266239) /locus_tag="Alide_1183" /note="cosubstrate binding site; other site" /db_xref="CDD:187714" misc_feature order(1266123..1266125,1266129..1266131,1266237..1266239) /locus_tag="Alide_1183" /note="catalytic site [active]" /db_xref="CDD:187714" gene 1266490..1267809 /locus_tag="Alide_1184" /db_xref="GeneID:10103218" CDS 1266490..1267809 /locus_tag="Alide_1184" /inference="protein motif:PFAM:PF01189" /note="PFAM: Fmu (Sun) domain protein; KEGG: aav:Aave_3433 Fmu (Sun) domain-containing protein" /codon_start=1 /transl_table=11 /product="fmu (sun) domain protein" /protein_id="YP_004125833.1" /db_xref="GI:319761896" /db_xref="InterPro:IPR001678" /db_xref="GeneID:10103218" /translation="MHPKALLDACAELVRLTLTFEHPADAVVSRYFRDHRALGPRERA TLAETAYAVLRRKPLFEQLARSGSGPKERRLAILGFASQLDEQARRADPSARRGPRDF LKSALTAQEKDWLDACDGVREDELLEPQRHNLPQWLAAPLKAQLGDEFWALAASLQEQ APLDLRVNTLQAKREDMRKELAQAGVQAAPTPYSPWGLRVQGKPALSRLDAFARGALE VQDEGSQLLALLLDAKRGEMVVDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDAL KPRLARSGLSNVHPAALAHERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQG PQAVQELAAKQTAILESAARLVKSGGRLVYATCSMLPEENEAIAEAFGAAHPDFAPLA AGELLAQLKVEQAAGLCSGGDDGMRYLRLWPHRHQTDGFFAAVWQKK" misc_feature 1266559..1267806 /locus_tag="Alide_1184" /note="16S rRNA methyltransferase B; Provisional; Region: PRK14901" /db_xref="CDD:184894" misc_feature 1266982..1267803 /locus_tag="Alide_1184" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1267921..1268091) /locus_tag="Alide_1185" /db_xref="GeneID:10103219" CDS complement(1267921..1268091) /locus_tag="Alide_1185" /inference="protein motif:TFAM:TIGR01023" /note="KEGG: dia:Dtpsy_2723 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33" /codon_start=1 /transl_table=11 /product="ribosomal protein l33" /protein_id="YP_004125834.1" /db_xref="GI:319761897" /db_xref="GO:0003735" /db_xref="InterPro:IPR001705" /db_xref="InterPro:IPR018264" /db_xref="GeneID:10103219" /translation="MAAKGGREKIKLVSTAETGHFYTTTKNKKTMPEKMSIIKFDPKA RKHVEYKEAKLK" misc_feature complement(1267930..1268088) /locus_tag="Alide_1185" /note="Ribosomal protein L33; Region: Ribosomal_L33; cl00383" /db_xref="CDD:193795" gene complement(1268112..1268345) /locus_tag="Alide_1186" /db_xref="GeneID:10103220" CDS complement(1268112..1268345) /locus_tag="Alide_1186" /inference="protein motif:TFAM:TIGR00009" /note="KEGG: ctt:CtCNB1_0883 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28" /codon_start=1 /transl_table=11 /product="ribosomal protein l28" /protein_id="YP_004125835.1" /db_xref="GI:319761898" /db_xref="GO:0003735" /db_xref="InterPro:IPR001383" /db_xref="GeneID:10103220" /translation="MARVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESEN RWVRLRVSSAALRLIDKNGIDSVLADMRARGQA" misc_feature complement(1268121..1268345) /locus_tag="Alide_1186" /note="Ribosomal L28 family; Region: Ribosomal_L28; cl00367" /db_xref="CDD:185945" gene complement(1268497..1269447) /locus_tag="Alide_1187" /db_xref="GeneID:10103221" CDS complement(1268497..1269447) /locus_tag="Alide_1187" /inference="protein motif:TFAM:TIGR01292" /note="manually curated; TIGRFAM: thioredoxin reductase; KEGG: dia:Dtpsy_2721 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="thioredoxin reductase" /protein_id="YP_004125836.1" /db_xref="GI:319761899" /db_xref="GO:0004791" /db_xref="InterPro:IPR000103" /db_xref="InterPro:IPR005982" /db_xref="InterPro:IPR008255" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10103221" /translation="MSTTQHAKVMILGSGPAGYTAAVYAARANLDPVLITGMAQGGQL MTTTEVDNWPADVNGVQGPELMQRFHEHAERFKTRIVFDHIGKVDLSRRPFTLTGDSG EYTCDALIIATGASAKYLGLPSEEAFMGRGVSACATCDGFFYRDQDVCVIGGGNTAVE EALYLANIARKVTLVHRRDKFRAEPILVDKLMERVAAGKIELKTFFTLDEVLGDASGV TGIRIKHTGDGHTEDIALQGCFIAIGHAPNTDIFQGQLAMENGYLITQGGLKGFATQT SVPGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRFLEQQ" misc_feature complement(1268506..1269447) /locus_tag="Alide_1187" /note="thioredoxin reductase; Provisional; Region: PRK10262" /db_xref="CDD:182343" misc_feature complement(1268791..1269003) /locus_tag="Alide_1187" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 1269592..1271928 /locus_tag="Alide_1188" /db_xref="GeneID:10103222" CDS 1269592..1271928 /locus_tag="Alide_1188" /inference="protein motif:PFAM:PF01580" /note="PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: ajs:Ajs_3382 DNA translocase FtsK" /codon_start=1 /transl_table=11 /product="cell division protein ftsk/spoiiie" /protein_id="YP_004125837.1" /db_xref="GI:319761900" /db_xref="GO:0000166" /db_xref="GO:0003677" /db_xref="GO:0005524" /db_xref="InterPro:IPR002543" /db_xref="InterPro:IPR018541" /db_xref="GeneID:10103222" /translation="MTYSLNTLNASAAGRSAPRSAAARFGHEIGLVLGLLALVFWLLA LVSYSAQDAAWSTSGAGDGRQLANWVGRLGAWLADGSYFVLGFSVWWCVAAGVRAWLS SLARWMRGGEGGAAAQGPWLRRAMFWGGLVVLMCASTALEWSRLYRFEALLPGHAGGM LGYVTGPAAVKWLGFTGSGLAGVVLVVLGAALVFRFSWGHLAERLGARIDALVQSGRA QREKAKDVAVGRRAAREREEVVQEERHEIEVQHPQPVHIIEPVLTDVPQSTRVVKERQ KPLFSEMPDSRLPQVDLLDAAQARQETVSPETLEMTSRLIEKKLKDFGVDVTVVAASP GPVITRYEIEPATGVKGSQIVNLAKDLARSLSLVSIRVIETIPGKNYMALELPNAKRQ TIRLAEILGSQVYHDAKSLLTMGLGKDIVGAPVVADLAKMPHVLVAGTTGSGKSVGIN AMILSLLYKAEARDVRLLMIDPKMLEMSVYEGIPHLLAPVVTDMKQAAHGLNWCVAEM ERRYKLMSKLGVRNLAGYNTKLDEARAREESIPNPFSLTPEAPEPLERLPHIVVVIDE LADLMMVVGKKIEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQV SSKIDSRTILDQMGAEALLGMGDMLYMASGTGLPIRVHGAFVSDDEVHRVVSYLKEQG EPDYIEGVLEGGSVDGEDSGFGLEGGEGDGEKDPMYDQAVEVVLKDRKASISYVQRKL RIGYNRSARLLEDMEKAGLVSGLTASGQREVLVPARGE" misc_feature 1270774..1271406 /locus_tag="Alide_1188" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1271737..1271919 /locus_tag="Alide_1188" /note="Ftsk gamma domain; Region: Ftsk_gamma; cl09645" /db_xref="CDD:158603" gene 1271940..1272572 /locus_tag="Alide_1189" /db_xref="GeneID:10103223" CDS 1271940..1272572 /locus_tag="Alide_1189" /inference="protein motif:TFAM:TIGR00547" /note="KEGG: ajs:Ajs_3381 outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein carrier protein lola" /protein_id="YP_004125838.1" /db_xref="GI:319761901" /db_xref="InterPro:IPR004564" /db_xref="InterPro:IPR018323" /db_xref="GeneID:10103223" /translation="MKKPIAAILIAASAQWASADGLKSLEQFMAAAHSGRADFTQTVT APAKDGQAQRPKLSSGSFEFQRPGRFKFVYKKPFEQTIVADGKTLWLYDADLNQVTER PQAQALGSTPAALLTSAPDLAALRADYQLQSAPEQDGLQWVLATPKASEGQLKSVRVG FEGDRLAALDIVDGFGQRSQIRFSGMQINPALPAGTFQFKPPAGADVLRP" sig_peptide 1271940..1271999 /locus_tag="Alide_1189" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.785 at residue 20" misc_feature 1271997..1272566 /locus_tag="Alide_1189" /note="lipoprotein chaperone; Reviewed; Region: lolA; PRK00031" /db_xref="CDD:178807" misc_feature 1272048..1272539 /locus_tag="Alide_1189" /note="Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl01065" /db_xref="CDD:194024" gene complement(1272576..1273532) /locus_tag="Alide_1190" /db_xref="GeneID:10103224" CDS complement(1272576..1273532) /locus_tag="Alide_1190" /inference="protein motif:PFAM:PF01040" /note="PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 1,4-dihydroxy-2-naphthoate octaprenyltransferase" /codon_start=1 /transl_table=11 /product="ubia prenyltransferase" /protein_id="YP_004125839.1" /db_xref="GI:319761902" /db_xref="GO:0004659" /db_xref="InterPro:IPR000537" /db_xref="GeneID:10103224" /translation="MPLPPASSALPAPPAPPDWRTLLRMTRPGSLLLTVAACLLGMAF ALACGCGFDPLRAAATLALAVTAHAGANVLNDYHDALSGADAANQEGLFPFSGGSRLI QQGLVSAADTARWAAVLLLLLVVPAGLLLALHSGGGLVLIGAAGLFLAWAYSAPPLAL MARGLGEVAVALAWWLVVLGADYVQRRQFFVIPAATAASFALLAANILLANGFPDAAA DARVGKKTLVVRLGARRAAWAYLLIALLAHGWLTLAVWLLIPPARALWGLASLPLSLA AGALLLRHAGQPQRLRPAIVLTIAAALVHALAIAAALASMAR" misc_feature complement(<1273203..1273478) /locus_tag="Alide_1190" /note="UbiA prenyltransferase family; Region: UbiA; cl00337" /db_xref="CDD:193776" gene complement(1273555..1274157) /locus_tag="Alide_1191" /db_xref="GeneID:10103225" CDS complement(1273555..1274157) /locus_tag="Alide_1191" /inference="similar to AA sequence:KEGG:Dtpsy_2718" /note="KEGG: dia:Dtpsy_2718 uracil-DNA glycosylase superfamily" /codon_start=1 /transl_table=11 /product="uracil-DNA glycosylase superfamily" /protein_id="YP_004125840.1" /db_xref="GI:319761903" /db_xref="GeneID:10103225" /translation="MMTPANEPLAALLGRVRACTICAAHLPLGPRPVLQAAAGARILI AGQAPGRKVHASGIPFDDASGARLRAWLGLSPEQFYDPALVAILPMGFCYPGPGPSGD APPRPECPPAWRAPLLARLPHIALTVVLGQYALAWHLPQSPRQVTRAVQDWQRHWPHT VVLPHPSPRNNGWLARHPWFEAELLPQVRARVAAVLAQAG" misc_feature complement(1273609..1274157) /locus_tag="Alide_1191" /note="Uracil DNA glycosylase superfamily; Region: UDG; cl00483" /db_xref="CDD:193838" gene 1274198..1275511 /locus_tag="Alide_1192" /db_xref="GeneID:10103226" CDS 1274198..1275511 /locus_tag="Alide_1192" /inference="protein motif:PFAM:PF00004" /note="KEGG: ajs:Ajs_3365 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="aaa atpase central domain protein" /protein_id="YP_004125841.1" /db_xref="GI:319761904" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="GeneID:10103226" /translation="MKPAASTHQPLAERLRPRTLGEVVGQQHVLGPGMPLRLAFESGR PHSCILWGPPGVGKTTIARLMAEAFDAQFISISAVLGGVKDIRDAVQLAESAAGGLMP QRTIVFVDEVHRFNKSQQDAFLPHVESGLFTFVGATTENPSFEVNSALLSRAAVYVLQ PLTSDDLKRIVVRAQDIQALPAIENEALERLIAYADGDARRLLNTLETLSVTAEQAKV ETITDAWLLQVLGERMRRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLDGGAD PRYMARRIVRMAWEDIGLADPRAMQICNEAAQTYERLGSPEGELALAQAVLYLAVAPK SNAGYMAYNKARAFVKQDGTRPVPLHLRNAPTRLMKELDYGKGYRYAHDEEGGFAAGE SYLPEGMEPPGFYAPVPRGLEIKIGQKLEELRARNAAADAPPTPD" misc_feature 1274225..1275481 /locus_tag="Alide_1192" /note="recombination factor protein RarA; Reviewed; Region: PRK13342" /db_xref="CDD:183986" misc_feature 1274267..1274683 /locus_tag="Alide_1192" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1274351..1274374 /locus_tag="Alide_1192" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1274354..1274377,1274525..1274527,1274612..1274614) /locus_tag="Alide_1192" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1274513..1274530 /locus_tag="Alide_1192" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1274654..1274656 /locus_tag="Alide_1192" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1274966..1275469 /locus_tag="Alide_1192" /note="MgsA AAA+ ATPase C terminal; Region: MgsA_C; cl13440" /db_xref="CDD:196613" gene 1275710..1276639 /locus_tag="Alide_1193" /db_xref="GeneID:10103227" CDS 1275710..1276639 /locus_tag="Alide_1193" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2712 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004125842.1" /db_xref="GI:319761905" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10103227" /translation="MDILLQQIINGLVLGSMYALIALGYTMVYGIIQLINFAHGEVLM IGALTSWSCIGLMQDAMPGAPGWLMLLLATLVACVVAATLNFAIEKVAYKPLRNSPRL APLITAIGMSILLQTLAMIVWKPNYKPYPTLLPAAPFQVGGAVITTTQILILGVTVVA LASMVWLVSYTRLGRAMRATAENPRVAALMGVKPDMVISATFIIGAVLAAIAGIMYAS NYGTAQHTMGFLPGLKAFTAAVFGGIGNLAGAVVGGLLLGLIEAIGSGYIGVLTGGVL GSHYTDIFAFIVLIIVLTLRPSGLLGERVADRA" misc_feature 1275740..1276612 /locus_tag="Alide_1193" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 1276262..1276318 /locus_tag="Alide_1193" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 1276656..1277732 /locus_tag="Alide_1194" /db_xref="GeneID:10103228" CDS 1276656..1277732 /locus_tag="Alide_1194" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2711 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004125843.1" /db_xref="GI:319761906" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10103228" /translation="MKNDKIRWIAGAVALLVLPLVLQYFGNAWVRIADLALLYVMLAL GLNIVVGYAGLLDLGYVAFYAVGAYMFGLLASPHLTENFAWFAQHFPDGMHLSLWAVI PLALVLAATTGVLLGIPVLKLRGDYLAIVTLGFGEIIRIFMNNLDHPVNLTNGPKGLG QIDSVKVFGLDLGRRLELFGYDINSVTLYYYLFLALVLVTIVICYRLQDSRIGRAWMA IREDEIAAKAMGINTRNMKLLAFGMGASFGGVAGAMFGAFQGFVSPESFSLMESVMIV AMVVLGGLGHIPGVILGAVLLSALPEVLRYVAGPLQAMTDGRLDASILRQLLIALAMI IVMLLRPRGLWPSPEHGKSLAQKS" misc_feature 1276794..1277597 /locus_tag="Alide_1194" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 1277325..1277381 /locus_tag="Alide_1194" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 1277754..1278536 /locus_tag="Alide_1195" /db_xref="GeneID:10103229" CDS 1277754..1278536 /locus_tag="Alide_1195" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_2710 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125844.1" /db_xref="GI:319761907" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103229" /translation="MADTSKEAVLKVAGISKRFGGLQALSDVGITIGRGQVYGLIGPN GAGKTTFFNVITGLYTPDSGTFELAGRPYEPTAVHKVAKAGIARTFQNIRLFADMTAL ENVMVGRHIRTHSGLFGAVFRTKGFRDEEAAIRRRAQELLDYVGIGRFADYKARTLSY GDQRRLEIARALATDPQLIALDEPAAGMNATEKVQLRELIDRIRNDDRTILLIEHDVK LVMGLCDRVTVLDYGKQIAEGTPAEVQKNEKVIEAYLGAGGH" misc_feature 1277772..1278524 /locus_tag="Alide_1195" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 1277781..1278503 /locus_tag="Alide_1195" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 1277877..1277900 /locus_tag="Alide_1195" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(1277886..1277891,1277895..1277903,1278024..1278026, 1278297..1278302,1278396..1278398) /locus_tag="Alide_1195" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 1278015..1278026 /locus_tag="Alide_1195" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 1278225..1278254 /locus_tag="Alide_1195" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 1278285..1278302 /locus_tag="Alide_1195" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 1278309..1278320 /locus_tag="Alide_1195" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 1278384..1278404 /locus_tag="Alide_1195" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 1278540..1279268 /locus_tag="Alide_1196" /db_xref="GeneID:10103230" CDS 1278540..1279268 /locus_tag="Alide_1196" /inference="protein motif:PFAM:PF00005" /note="KEGG: ajs:Ajs_3361 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125845.1" /db_xref="GI:319761908" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103230" /translation="MAEKSNKVLLQVKGLKVAYGGIQAVKGIDFEVREGELVSLIGSN GAGKTTTMKAITGTLSFVDGDIEYLGKSIRGRGAWDLVKEGLVMVPEGRGVFARMSIT ENLLMGAYTRNDKAGIAADVEKMFTIFPRLRERRDQLAGTMSGGEQQMLAMGRALMSQ PKVLLLDEPSMGLSPIMVDKIFEVVRDVYALGVTIVLVEQNASRALAIADRGYVMESG MITMTGAGQELLSDPRVRAAYLGE" misc_feature 1278564..1279262 /locus_tag="Alide_1196" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 1278567..1279235 /locus_tag="Alide_1196" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 1278663..1278686 /locus_tag="Alide_1196" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(1278672..1278677,1278681..1278689,1278810..1278812, 1279038..1279043,1279137..1279139) /locus_tag="Alide_1196" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 1278801..1278812 /locus_tag="Alide_1196" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 1278966..1278995 /locus_tag="Alide_1196" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 1279026..1279043 /locus_tag="Alide_1196" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 1279050..1279061 /locus_tag="Alide_1196" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 1279125..1279145 /locus_tag="Alide_1196" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 1279316..1279726 /locus_tag="Alide_1197" /db_xref="GeneID:10103231" CDS 1279316..1279726 /locus_tag="Alide_1197" /inference="protein motif:PFAM:PF04342" /note="PFAM: protein of unknown function DUF486; KEGG: dia:Dtpsy_2708 protein of unknown function DUF486" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125846.1" /db_xref="GI:319761909" /db_xref="InterPro:IPR007437" /db_xref="GeneID:10103231" /translation="MAGGRLRPIWLIIPAMLHTLQSLPVPLQTVLLLAASNVFMTFAW YGHLRNLATAPWYMAALASWGIALFEYLLQVPANRIGHAQFSVGQLKIMQEVVTLAVF VPFAVFYMNEPLKWDYLWAGLCLVGAVYFIFRGG" misc_feature 1279394..1279717 /locus_tag="Alide_1197" /note="Protein of unknown function, DUF486; Region: DUF486; cl01236" /db_xref="CDD:120496" gene complement(1279765..1280361) /locus_tag="Alide_1198" /db_xref="GeneID:10103232" CDS complement(1279765..1280361) /locus_tag="Alide_1198" /inference="similar to AA sequence:KEGG:Aave_1879" /note="KEGG: aav:Aave_1879 OmpA domain-containing protein" /codon_start=1 /transl_table=11 /product="ompa domain-containing protein" /protein_id="YP_004125847.1" /db_xref="GI:319761910" /db_xref="GeneID:10103232" /translation="MQSTLRFLLCALVLGGGATAGLAQMRAAQSDPSLLPGVSRGYVG LSGGISKYDLRSGTGGFIFDDSDRAIKLYTGAYFHPNLGLELGYLDLGKARRIGGTTT ARGLNLSLVGRLPVSTQLDLLGKVGTIYGRTNTHGFGGFGVQPGKGDGFGLSYGAGLR WAFTPQWSAVLEWERYRLHFADSKSDVDMTTLGMQFSY" sig_peptide complement(1280290..1280361) /locus_tag="Alide_1198" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.305 at residue 24" misc_feature complement(1279783..1280238) /locus_tag="Alide_1198" /note="Surface antigen; Region: Surface_Ag_2; cl01155" /db_xref="CDD:194055" gene 1280601..1281248 /locus_tag="Alide_1199" /db_xref="GeneID:10103233" CDS 1280601..1281248 /locus_tag="Alide_1199" /inference="protein motif:PFAM:PF01865" /note="PFAM: Putitive phosphate transport regulator; KEGG: dia:Dtpsy_2707 protein of unknown function DUF47" /codon_start=1 /transl_table=11 /product="phosphate transport regulator" /protein_id="YP_004125848.1" /db_xref="GI:319761911" /db_xref="InterPro:IPR018445" /db_xref="GeneID:10103233" /translation="MLFGKLLPREGNFFEMFNQHADRIVEAARAFSQLVANYGDTHLR DQYNQDVDNAERAADRVTHEVNRALHKTFITPIDREQIHSLINTMDDVADLIQDSAET MALYDVRHMTDEITRLTDLSVKCCERVRDAVKLLARIADPAVAEAALKTCEEIDRLEG DADRVLRSAMSKLFREETDVRELIKLKAIYELLETITDKCEDVANLIEGVILENS" misc_feature 1280601..1281242 /locus_tag="Alide_1199" /note="Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]; Region: COG1392" /db_xref="CDD:31582" gene 1281269..1282279 /locus_tag="Alide_1200" /db_xref="GeneID:10103234" CDS 1281269..1282279 /locus_tag="Alide_1200" /inference="protein motif:PFAM:PF01384" /note="PFAM: phosphate transporter; KEGG: dia:Dtpsy_2706 phosphate transporter" /codon_start=1 /transl_table=11 /product="phosphate transporter" /protein_id="YP_004125849.1" /db_xref="GI:319761912" /db_xref="GO:0005315" /db_xref="InterPro:IPR001204" /db_xref="InterPro:IPR001917" /db_xref="GeneID:10103234" /translation="METVQTALWVVVVLVALAILFDFMNGFHDAANSIATVVSTGVLK PTQAVVFAAFFNFVAIFIFHLSVAATVGKGIADPGVVDTHVVFGALVGAITWNVITWY YGIPSSSSHALIGGIVGSVVAKSGTGALVASGIFKTVAFIFISPILGFVLGSLMMVCV AWLFRRTRPSKVDKWFRRLQLVSAGAYSLGHGGNDAQKTIGIIWLLLIATGYASASDT SPPVWTIVSCYAAIGLGTMFGGWRIVKTMGQKITKLKPVGGFCAESGGALTLFFATML GVPVSTTHTITGAIVGVGSTQRASAVRWGVAGNIVWAWILTIPASAFVAAVAYWVSLQ LF" misc_feature 1281341..1282243 /locus_tag="Alide_1200" /note="Phosphate transporter family; Region: PHO4; cl00396" /db_xref="CDD:193801" gene complement(1282333..1282779) /locus_tag="Alide_1201" /db_xref="GeneID:10103235" CDS complement(1282333..1282779) /locus_tag="Alide_1201" /inference="similar to AA sequence:KEGG:Dtpsy_2705" /note="KEGG: dia:Dtpsy_2705 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125850.1" /db_xref="GI:319761913" /db_xref="GeneID:10103235" /translation="MKNKTIAAWLAFLGGPLGLHRFYLYGFGDMLGWLLPVPTALGLY GIERVQQWGQDDQLSWMLIPLLGFTIAGCALCAIVYGLMPPEKWNARFNKAAAPDSPA GRTNWFTVFAVTVSLLVGAAVLLASIAFSLQRYFEYQVEEARKISQ" misc_feature complement(1282642..1282779) /locus_tag="Alide_1201" /note="TM2 domain; Region: TM2; cl00984" /db_xref="CDD:193996" gene complement(1282802..1283329) /locus_tag="Alide_1202" /db_xref="GeneID:10103236" CDS complement(1282802..1283329) /locus_tag="Alide_1202" /inference="protein motif:PRIAM:2.3.1.183" /note="KEGG: dia:Dtpsy_2704 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="phosphinothricin acetyltransferase" /protein_id="YP_004125851.1" /db_xref="GI:319761914" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10103236" /translation="MQMPTIRASRDDDLAAITAIYAHHVLHGTGTFEIDPPGIQDMAA RRADVLARGLPYLVAEEDGRVTGFAYCNWFKPRPAYRYSAEDSIYVADHARGRGLGRL LLDALAEHAQAAGVRKLLAVIGDSANAGSIAVHRAAGFTEVGVMRSVGWKFGAWRDIV LMEKPLGAGDTTAPE" misc_feature complement(1282820..1283317) /locus_tag="Alide_1202" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene 1283446..1283700 /locus_tag="Alide_1203" /db_xref="GeneID:10103237" CDS 1283446..1283700 /locus_tag="Alide_1203" /inference="protein motif:TFAM:TIGR00002" /note="KEGG: dia:Dtpsy_2703 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16" /codon_start=1 /transl_table=11 /product="ribosomal protein s16" /protein_id="YP_004125852.1" /db_xref="GI:319761915" /db_xref="GO:0003735" /db_xref="InterPro:IPR000307" /db_xref="GeneID:10103237" /translation="MVVIRLSRGGSKGRPFFNIVVADKRVRRDGRFIERLGFYNPSAK GGEESLRIAQDRLTYWKSVGAQSSPTVDRLVKQAAAKQAA" misc_feature 1283446..1283670 /locus_tag="Alide_1203" /note="Ribosomal protein S16; Region: Ribosomal_S16; cl00368" /db_xref="CDD:193791" gene 1283794..1284366 /locus_tag="Alide_1204" /db_xref="GeneID:10103238" CDS 1283794..1284366 /locus_tag="Alide_1204" /inference="protein motif:TFAM:TIGR02273" /note="KEGG: dia:Dtpsy_2702 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein" /codon_start=1 /transl_table=11 /product="16S rRNA processing protein rimm" /protein_id="YP_004125853.1" /db_xref="GI:319761916" /db_xref="GO:0043022" /db_xref="InterPro:IPR002676" /db_xref="InterPro:IPR007903" /db_xref="InterPro:IPR011961" /db_xref="GeneID:10103238" /translation="MPQPPALEPAELPSDAVEVGRIADAWGVKGWFKVLPYSSDPEAL FASRSWFLQPAQKGGKSFFSGTVLLPIRQARTHSDAVVAWAHGVDDRDAAEALRGARI FVPRESFPATSDDEYYWVDLIGLAVVNREGIALGTVSELLPTGPQTTLVLSYEHEGKP RERMIPFVSAYVDKVDLAGRRITVDWQPDY" misc_feature 1283836..1284363 /locus_tag="Alide_1204" /note="16S rRNA-processing protein RimM; Provisional; Region: rimM; PRK00122" /db_xref="CDD:178881" misc_feature 1283845..1284114 /locus_tag="Alide_1204" /note="RimM N-terminal domain; Region: RimM; pfam01782" /db_xref="CDD:190106" misc_feature 1284133..1284351 /locus_tag="Alide_1204" /note="Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to...; Region: PRCH; cl09959" /db_xref="CDD:164180" gene 1284374..1285141 /locus_tag="Alide_1205" /db_xref="GeneID:10103239" CDS 1284374..1285141 /locus_tag="Alide_1205" /EC_number="2.1.1.31" /inference="protein motif:TFAM:TIGR00088" /note="TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: ajs:Ajs_3353 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase" /codon_start=1 /transl_table=11 /product="tRNA (guanine-n1)-methyltransferase" /protein_id="YP_004125854.1" /db_xref="GI:319761917" /db_xref="GO:0003723" /db_xref="GO:0009019" /db_xref="InterPro:IPR002649" /db_xref="InterPro:IPR016009" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103239" /translation="MRFDVITLFPELFAPFLACGVTRRAYASGQVQVHLWNPRDHAEG NYRRVDDRPFGGGPGMVMMAEPLARCLAAIRADRAEAEGAKAPLVLFSPVGRRLDHAA VQGWSAGVGAVLLCGRYEGVDQRFIDAHVDVQVSLGDFVLSGGEIAAMALLDAVARLQ PGVLHDDDSHQLDSFNPALDGLLDCPHYTRPEQWQGLGVPAPLLSGHHAQIERWRRDQ RLLVTARHRPDLLEAARARGQITRADEDLLARSRALL" misc_feature 1284374..1285120 /locus_tag="Alide_1205" /note="tRNA (Guanine-1)-methyltransferase; Region: tRNA_m1G_MT; cl00407" /db_xref="CDD:185975" gene 1285261..1285647 /locus_tag="Alide_1206" /db_xref="GeneID:10103240" CDS 1285261..1285647 /locus_tag="Alide_1206" /inference="protein motif:TFAM:TIGR01024" /note="KEGG: dac:Daci_5342 ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19" /codon_start=1 /transl_table=11 /product="ribosomal protein l19" /protein_id="YP_004125855.1" /db_xref="GI:319761918" /db_xref="GO:0003735" /db_xref="InterPro:IPR001857" /db_xref="InterPro:IPR018257" /db_xref="GeneID:10103240" /translation="MNLIQILEQEEIARLNKAIPEFAPGDTVIVSVNVVEGSRKRVQA YEGVVIAKRNRGLNSGFTVRKISSGEGVERTFQTYSPLIAKIEVKRRGDVRRAKLYYL RERSGKSARIKEKLPSRVKVAAADAA" misc_feature 1285261..1285617 /locus_tag="Alide_1206" /note="Ribosomal protein L19; Region: Ribosomal_L19; cl00406" /db_xref="CDD:193803" gene 1285758..1286441 /locus_tag="Alide_1207" /db_xref="GeneID:10103241" CDS 1285758..1286441 /locus_tag="Alide_1207" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3351 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="nudix hydrolase" /protein_id="YP_004125856.1" /db_xref="GI:319761919" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="GeneID:10103241" /translation="MSSLSSLPDFDPRAAPLVGVDDHLPAVPPAAQSPDALRRRFAAP PPWNPEIVRERKFVERKPAHAAVLLPIVLRERPTVLLTERTDHLSTHKGQVAFPGGRS DPEDRDAAATALREAHEEVGLESSRVEVLGSLPIYVTGSSFIVTPVVGLVQPGFALQP NPHEVADVFEVPLAFLLDPAHHERHAFEWQGLRREWFAMPYQDGDRQRYIWGATAAML RNFYRFMAA" misc_feature 1285947..1286420 /locus_tag="Alide_1207" /note="Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative...; Region: CoAse; cd03426" /db_xref="CDD:72884" misc_feature order(1286007..1286009,1286037..1286039,1286058..1286060, 1286100..1286105,1286184..1286186) /locus_tag="Alide_1207" /note="putative active site [active]" /db_xref="CDD:72884" misc_feature order(1286007..1286009,1286037..1286039,1286058..1286060, 1286100..1286102,1286184..1286186) /locus_tag="Alide_1207" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:72884" misc_feature 1286055..1286126 /locus_tag="Alide_1207" /note="nudix motif; other site" /db_xref="CDD:72884" misc_feature 1286103..1286105 /locus_tag="Alide_1207" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:72884" gene 1286488..1287477 /locus_tag="Alide_1208" /db_xref="GeneID:10103242" CDS 1286488..1287477 /locus_tag="Alide_1208" /inference="protein motif:PFAM:PF03186" /note="PFAM: cobalamin biosynthesis protein CbiB; KEGG: dia:Dtpsy_2698 cobalamin biosynthesis protein CbiB" /codon_start=1 /transl_table=11 /product="cobalamin biosynthesis protein cbib" /protein_id="YP_004125857.1" /db_xref="GI:319761920" /db_xref="InterPro:IPR004485" /db_xref="GeneID:10103242" /translation="MSFFAILFALLIEQARPLARSNPIHAGLRAWALSVSRNFDAGQA QHGWVAWALAVLVPPLFVLAVHWALLHFIGWPLALAWNVAVLYITLGFRQFSHHFTGI RDALEDGDAAEARARLARWRQVDASELPRSEIVRHVLEYSVIAAHRHVFGVLAWYSVL AALGLGPTGAVLYRLAEFVSRYWGSRSRVVTSHPPSPSLQRASERAWTVIDWLPARLT ALSFAVVGSFEEAIEGWRFHAQRFPNDNDGVVLAATAGAINVRLGGEALRSRSDAAAP QGLEVDADIGDSVSTPGREPEVGHLRSVVGLVWRSVVVWMLLLALLTLARLLG" misc_feature 1286488..1287348 /locus_tag="Alide_1208" /note="CobD/Cbib protein; Region: CobD_Cbib; cl00561" /db_xref="CDD:193870" gene 1287553..1288635 /locus_tag="Alide_1209" /db_xref="GeneID:10103243" CDS 1287553..1288635 /locus_tag="Alide_1209" /inference="protein motif:TFAM:TIGR01141" /note="KEGG: vap:Vapar_1479 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="histidinol-phosphate aminotransferase" /protein_id="YP_004125858.1" /db_xref="GI:319761921" /db_xref="GO:0004400" /db_xref="InterPro:IPR001917" /db_xref="InterPro:IPR004839" /db_xref="InterPro:IPR005861" /db_xref="GeneID:10103243" /translation="MTVPSLCSPVVGRLEPYVPGEQPRIAGLVKLNTNENPYPPSPRA VAAIEAAAREGLQLYPDPQSLALRETIAAHHGLEAGQVFVGNGSDEVLAHAFFAFFQH AGQPLLMPDITYSFYRVYCRLWGIAPELQPLDEGLAIDVERIAARAAEGACAGIVLAN PNAPTGMGLPLSQIERLLAACPQRVVLVDEAYVDFGGESAVSLVPRYPNLLVVHTLSK SRSLAGLRVGAAFGQRPLIDALERVKDSFNSYPLDRLAQAGARAAYEDVAYFDETRRA VMHSREGLALALEDLGFEVLPSQANFLFVRHPAHDGARLAAALRERAVLVRHFARPER IAQYLRISVGTPAQCDALVRALQAIV" misc_feature 1287574..1288632 /locus_tag="Alide_1209" /note="Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]; Region: HisC; COG0079" /db_xref="CDD:30428" misc_feature 1287637..1288626 /locus_tag="Alide_1209" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(1287811..1287819,1287892..1287894,1288039..1288041, 1288126..1288128,1288195..1288197,1288201..1288206, 1288228..1288230) /locus_tag="Alide_1209" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(1287820..1287822,1287922..1287924,1288105..1288107, 1288222..1288230,1288318..1288320,1288327..1288329) /locus_tag="Alide_1209" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 1288204..1288206 /locus_tag="Alide_1209" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(1288642..1290300) /locus_tag="Alide_1210" /db_xref="GeneID:10103244" CDS complement(1288642..1290300) /locus_tag="Alide_1210" /inference="protein motif:PFAM:PF00916" /note="PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pne:Pnec_1354 sulphate transporter" /codon_start=1 /transl_table=11 /product="sulphate transporter" /protein_id="YP_004125859.1" /db_xref="GI:319761922" /db_xref="GO:0005215" /db_xref="InterPro:IPR002645" /db_xref="InterPro:IPR011547" /db_xref="GeneID:10103244" /translation="MASPTRMLSFRPRLADALRGYDRARFMQDFSAGLTVAVVALPLA MAFAIASGLPPEAGLFTAIIAGFLISALGGSKVQIGGPAGAFIVIVYGIVQQYGVANL IIATALSGVLLFLMGVLQLGTLVRFIPVAVVIGFTNGIAVLIALSQVKDFLGLAIEKM PGDFFGMLGALYQHLSTLNPWAAGVSAVSLALVVGWQRWLSAWRHPWAGTLARVPGSI VALVLATAVVALSGMPVETIGCRFGGIPAGLPAFTLPDFSWESARHLLMPTITLALLG SIESLLCARVADGMVGDRHDPNQELMAQGIANFVTPFFGGMPATGTIARTVTNVKSGA TSPVAGMVHALALLLVMLAAAPLAASIPLATLAAILMFVAWNMGEWREFTRLKTYRLP YRVTLVSVFLLTVIFDLTVAVEFGIFAACLTFIYRISSLSRAERIDAADMPVLAGHDG QVQVWRLYGALFFGATKLLEAMEDHLPARALVLDLKNVIYVDSTGAEALEHLSHACAT RGVRLIVSGLISQPLDIARRTGLYERLRPDLQPDVASAAAAAVA" misc_feature complement(1288708..1290291) /locus_tag="Alide_1210" /note="putative transporter; Provisional; Region: PRK11660" /db_xref="CDD:183265" misc_feature complement(1289140..1289955) /locus_tag="Alide_1210" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" misc_feature complement(1288687..1288959) /locus_tag="Alide_1210" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042" /db_xref="CDD:132913" gene complement(1290315..1291286) /locus_tag="Alide_1211" /db_xref="GeneID:10103245" CDS complement(1290315..1291286) /locus_tag="Alide_1211" /inference="protein motif:TFAM:TIGR00157" /note="KEGG: dia:Dtpsy_2697 ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC" /codon_start=1 /transl_table=11 /product="ribosome small subunit-dependent gtpase a" /protein_id="YP_004125860.1" /db_xref="GI:319761923" /db_xref="GO:0003924" /db_xref="GO:0005525" /db_xref="InterPro:IPR004881" /db_xref="InterPro:IPR010914" /db_xref="GeneID:10103245" /translation="MAEAGARLEGLVVASHGRHCVVESADGQRRICHPRGKKSQAVVG DRVLWQPAAPGQGRGQGDEGTIERVQERRNLFYRQDEVRTKSFAANLDQVLILIAAEP VFSESQLARALIAAEAAQITPLIALNKSDLVEPFARAWERLWPYRHMGGEQDTKHHYR VLPLSLTESGPVDRDALLPLLAGKTTLVLGPSGSGKSTLVNLLVPHAKAQTGEISQAL NSGRHTTTSTQLYWIDEARTTALIDSPGFQEFGLRHLAPADLARCMPDIAAHAGECRF YNCTHLHEPGCAVRAQVETDDSPGTISASRYRIYGELFAELSEAPRY" misc_feature complement(1290318..1291265) /locus_tag="Alide_1211" /note="GTPase RsgA; Reviewed; Region: PRK00098" /db_xref="CDD:178861" misc_feature complement(1290342..1291259) /locus_tag="Alide_1211" /note="YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence...; Region: YjeQ_engC; cd01854" /db_xref="CDD:57925" misc_feature complement(order(1290591..1290593,1290597..1290602, 1290606..1290608,1291017..1291022,1291062..1291064, 1291149..1291160,1291242..1291244,1291248..1291250)) /locus_tag="Alide_1211" /note="GTPase/OB domain interface [polypeptide binding]; other site" /db_xref="CDD:57925" misc_feature complement(order(1290348..1290350,1290360..1290362, 1290369..1290371,1290492..1290494,1290498..1290500, 1290510..1290512,1290810..1290812,1290933..1290938, 1290945..1290950,1290954..1290959,1290966..1290971)) /locus_tag="Alide_1211" /note="GTPase/Zn-binding domain interface [polypeptide binding]; other site" /db_xref="CDD:57925" misc_feature complement(order(1290693..1290710,1290789..1290794, 1290891..1290896,1290900..1290905)) /locus_tag="Alide_1211" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:57925" misc_feature complement(1290894..1290905) /locus_tag="Alide_1211" /note="G4 box; other site" /db_xref="CDD:57925" misc_feature complement(1290786..1290794) /locus_tag="Alide_1211" /note="G5 box; other site" /db_xref="CDD:57925" misc_feature complement(1290696..1290719) /locus_tag="Alide_1211" /note="G1 box; other site" /db_xref="CDD:57925" misc_feature complement(1290600..1290623) /locus_tag="Alide_1211" /note="Switch I region; other site" /db_xref="CDD:57925" misc_feature complement(1290612..1290614) /locus_tag="Alide_1211" /note="G2 box; other site" /db_xref="CDD:57925" misc_feature complement(1290549..1290560) /locus_tag="Alide_1211" /note="G3 box; other site" /db_xref="CDD:57925" misc_feature complement(1290546..1290554) /locus_tag="Alide_1211" /note="Switch II region; other site" /db_xref="CDD:57925" gene complement(1291296..1291634) /locus_tag="Alide_1212" /db_xref="GeneID:10103246" CDS complement(1291296..1291634) /locus_tag="Alide_1212" /inference="protein motif:PFAM:PF01329" /note="KEGG: dia:Dtpsy_2696 transcriptional coactivator/pterin dehydratase; manually curated; PFAM: transcriptional coactivator/pterin dehydratase" /codon_start=1 /transl_table=11 /product="transcriptional coactivator/pterin dehydratase" /protein_id="YP_004125861.1" /db_xref="GI:319761924" /db_xref="GO:0008124" /db_xref="InterPro:IPR001533" /db_xref="GeneID:10103246" /translation="MTSMFPKKDWSGHTRRALTATEVVARLAELQGWMLCGDGADVAI EKTYRFADYHETMAFVNAVAFIAHAQDHHPDLSVHYGRCVVRLNTHDVGGISATDIDC AARIDALLTP" misc_feature complement(1291308..1291541) /locus_tag="Alide_1212" /note="PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by...; Region: PCD_DCoH; cd00488" /db_xref="CDD:48348" misc_feature complement(order(1291365..1291367,1291407..1291409, 1291416..1291418,1291464..1291466,1291476..1291478)) /locus_tag="Alide_1212" /note="aromatic arch; other site" /db_xref="CDD:48348" misc_feature complement(order(1291395..1291418,1291431..1291433, 1291452..1291454,1291464..1291466,1291476..1291478)) /locus_tag="Alide_1212" /note="DCoH dimer interaction site [polypeptide binding]; other site" /db_xref="CDD:48348" misc_feature complement(order(1291428..1291433,1291440..1291442, 1291449..1291454,1291470..1291475)) /locus_tag="Alide_1212" /note="DCoH /HNF-1 dimer interaction site [polypeptide binding]; other site" /db_xref="CDD:48348" misc_feature complement(order(1291428..1291430,1291440..1291442, 1291449..1291454,1291473..1291475)) /locus_tag="Alide_1212" /note="DCoH tetramer interaction site [polypeptide binding]; other site" /db_xref="CDD:48348" misc_feature complement(order(1291362..1291367,1291371..1291373, 1291416..1291424)) /locus_tag="Alide_1212" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:48348" gene complement(1291631..1292923) /locus_tag="Alide_1213" /db_xref="GeneID:10103247" CDS complement(1291631..1292923) /locus_tag="Alide_1213" /EC_number="3.4.24.84" /inference="protein motif:PRIAM:3.4.24.84" /note="KEGG: dia:Dtpsy_2695 STE24 endopeptidase; PFAM: peptidase M48 Ste24p" /codon_start=1 /transl_table=11 /product="ste24 endopeptidase" /protein_id="YP_004125862.1" /db_xref="GI:319761925" /db_xref="InterPro:IPR001915" /db_xref="GeneID:10103247" /translation="MLTPSTLTTLVFATLLLAGLALRLWLASRQIRHVARHRGAVPAA FAGRITLAAHQKAADYTIAKARFGLLEMALATAAVLGWTLLGGLDALNQALLAWLGGG MVQQLALLAAFALVSGAIDLPAQLYQTFRLEQRFGFNQMTPRLWLADLLKSTLLGAVI GLPIAALMLWLMGAAGRLWWLWAWGAWMGFNLLLMVVFPIFIAPLFNKFQPLGDESLK ARVTALMQRCGFAAKGLFVMDGSRRSAHANAYFTGFGAAKRVVFYDTLLKQLAPGEVE AVLAHELGHFKHKHIARRLAGMFAISLAGFALLGWLSARGWFYTGLGVQPNLMLPGVP GSAPNDGLALLLFLLAAPVFTVFLTPLLARISRRHEFQADAYAAAQANGADLASALLK LYQDNASTLTPDPVYARFYYSHPPATERLARLPVTMQP" misc_feature complement(1291658..1292350) /locus_tag="Alide_1213" /note="Peptidase family M48; Region: Peptidase_M48; cl12018" /db_xref="CDD:187163" gene 1292943..1293554 /locus_tag="Alide_1214" /db_xref="GeneID:10103248" CDS 1292943..1293554 /locus_tag="Alide_1214" /inference="protein motif:PFAM:PF00929" /note="KEGG: dia:Dtpsy_2694 oligoribonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease" /codon_start=1 /transl_table=11 /product="exonuclease rnase t and DNA polymerase iii" /protein_id="YP_004125863.1" /db_xref="GI:319761926" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR013520" /db_xref="GeneID:10103248" /translation="MNAEVYGDNSGMSETATPNAPVLAKSDQNLVWLDCEMSGLNPET ERLLEIAVVVTGPGLEPRVEGPVLVIHQPDTVLDAMDAWNKGTHGRSGLIDKVRASTL TEADAEQQIIDFLSRYVPKGKVPMCGNSIGQDRRFLVKYMPRLEAFFHYRNVDVSTLK ELARRWKPEAYDSFKKAQRHTALADVHESIDELVHYRQHLLAL" misc_feature 1293030..1293545 /locus_tag="Alide_1214" /note="DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins; Region: Orn; cd06135" /db_xref="CDD:99838" misc_feature order(1293042..1293053,1293057..1293059,1293327..1293332, 1293336..1293344,1293480..1293482,1293495..1293497) /locus_tag="Alide_1214" /note="putative active site [active]" /db_xref="CDD:99838" misc_feature order(1293042..1293053,1293057..1293059,1293327..1293332, 1293336..1293341,1293480..1293482,1293495..1293497) /locus_tag="Alide_1214" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:99838" misc_feature order(1293042..1293044,1293048..1293050,1293342..1293344, 1293480..1293482,1293495..1293497) /locus_tag="Alide_1214" /note="catalytic site [active]" /db_xref="CDD:99838" misc_feature order(1293111..1293113,1293336..1293341,1293348..1293350, 1293357..1293359,1293396..1293401,1293405..1293407, 1293414..1293416,1293423..1293425,1293438..1293443, 1293534..1293536,1293540..1293545) /locus_tag="Alide_1214" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99838" gene 1293678..1294811 /locus_tag="Alide_1215" /db_xref="GeneID:10103249" CDS 1293678..1294811 /locus_tag="Alide_1215" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: vap:Vapar_5221 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004125864.1" /db_xref="GI:319761927" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10103249" /translation="MQFPSLKSTLVAAAALACAAGALAQEQIVKIGHSGPLSGPNTFA GRDNDNGVRLAIEELNARKISVGGKTLKFELVSEDDQCDAKTGVAVAQKFVDSGVRYV MGPYCSGVTIPASREYDKGGVMVSTVGTNPKITQAGYKNLFRIVASDVQAGASMATYA ANVLKAKKVAVIDDRTAFGQGLADEFAKEAQKLGMTVAGREFTTDKATDFMAILTNIK AKQPEAIFYGGYAPQAAPMARQIKQLGINAKLLGGDTLCSPEMPKLGGDAVNGVVYCA YAGMLMESDAGARAFQDKFKKRFNQAPDVYGPFYYDQVMNIGEAMQKSGSIDVNKVGA YMHQHTYKGVMGEYAYDDKGNRVKAPVVVMTFEGGKAKPLASY" sig_peptide 1293678..1293752 /locus_tag="Alide_1215" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" misc_feature 1293753..1294787 /locus_tag="Alide_1215" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1293765..1294775 /locus_tag="Alide_1215" /note="Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342" /db_xref="CDD:107337" misc_feature order(1293786..1293788,1293813..1293815,1293825..1293827, 1293834..1293836,1294392..1294394,1294455..1294457, 1294464..1294466,1294473..1294478,1294572..1294574) /locus_tag="Alide_1215" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:107337" misc_feature order(1293993..1294001,1294059..1294064,1294209..1294211, 1294365..1294367,1294437..1294439) /locus_tag="Alide_1215" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107337" gene 1295078..1296832 /locus_tag="Alide_1216" /db_xref="GeneID:10103250" CDS 1295078..1296832 /locus_tag="Alide_1216" /inference="protein motif:PFAM:PF00270" /note="KEGG: dia:Dtpsy_2693 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein" /codon_start=1 /transl_table=11 /product="dead/deah box helicase domain protein" /protein_id="YP_004125865.1" /db_xref="GI:319761928" /db_xref="GO:0003676" /db_xref="GO:0004386" /db_xref="GO:0005524" /db_xref="GO:0008026" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR014021" /db_xref="GeneID:10103250" /translation="MTENMQLQGDCAPADSSLPSSNPVAAAALPEGFVRLGLAPELVQ AVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAAFLLPVLHTLIQ QQADADAAARAEFERAAAEAAARGEAAPKRPKRKNPTHPRNFKAAAPGALVLCPTREL AQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARLQNANLVVATPGRLLDLQRSMQI KLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQQLAMRVMH EGGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIGQAIVFASTQV ECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPSI THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQFKAEV VAGLEPTQRFPQGGRPDFGGRGREGGRGRDQRFGGGGRGHGGDRAGYGGRRDGDGYGR KSGFGETARFGDAPRFSETPRFGEASRFGRGEGAAPRGDFGRKAEFARGGFAKPQGAG KPFTPHDARKRPAPRGGR" misc_feature 1295168..1296412 /locus_tag="Alide_1216" /note="helicase 45; Provisional; Region: PTZ00424" /db_xref="CDD:185609" misc_feature 1295174..1295908 /locus_tag="Alide_1216" /note="DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (...; Region: DEADc; cd00268" /db_xref="CDD:28928" misc_feature 1295330..1295344 /locus_tag="Alide_1216" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28928" misc_feature 1295762..1295773 /locus_tag="Alide_1216" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:28928" misc_feature 1295855..1295863 /locus_tag="Alide_1216" /note="motif III; other site" /db_xref="CDD:28928" misc_feature 1295963..1296355 /locus_tag="Alide_1216" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(1296068..1296079,1296137..1296142,1296215..1296223) /locus_tag="Alide_1216" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(1296239..1296241,1296302..1296304,1296314..1296316, 1296323..1296325) /locus_tag="Alide_1216" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene 1296953..1298416 /locus_tag="Alide_1217" /db_xref="GeneID:10103251" CDS 1296953..1298416 /locus_tag="Alide_1217" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_1895 diguanylate cyclase; SMART: GGDEF domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004125866.1" /db_xref="GI:319761929" /db_xref="InterPro:IPR000160" /db_xref="GeneID:10103251" /translation="MLPPVSSNTDFEHMFEIAPVSLWLEDYSDVRRLLMQWRDQGVVD VEAHLRENRECVRAYGAGIRLLRVNQRTLELFAAPDQATLEASLDRVFRDDMYESAIA EVQQLWSGAPEFSNQTVNYALDGRRLDVRIRGRILPGYEQCWSRVLVSLEDVTEQVQS RLRLQRSEEYARGLFEHSPVSLWVEDFSAVKRLLDEVRMQGIYDFRTFLKVHPEFVQR CMREIRVLDVNHLTLEMFGAESKQALLAGLDRVFRGEMHDSFSEQLIDLWDGKLFQQR EVVNYNLSGEPIHIHMQFAVLEERSHDWGMVLLSLVDITARKKAEAYLEYLGKHDVLT GLRNRAYYVEEMSRLARKGPWPVAVVAIDLNGLKAINDEQGHTAGDAMLRRVGEVLAK AVDAPICAARIGGDEFCVLMPMTDARGAQAMVDRIGSLLELNNQFYPGQALSLSMGVA IAQSGEQIEAAVHRADQAMYAEKARYYAAMGVDRRRD" misc_feature 1297589..1297894 /locus_tag="Alide_1217" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(1297634..1297636,1297646..1297648,1297664..1297666, 1297703..1297714,1297790..1297792,1297805..1297807) /locus_tag="Alide_1217" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(1297694..1297696,1297706..1297708,1297730..1297732, 1297739..1297744,1297826..1297828,1297832..1297834) /locus_tag="Alide_1217" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 1297940..1298377 /locus_tag="Alide_1217" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1298039..1298041,1298168..1298170) /locus_tag="Alide_1217" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1298054..1298056,1298063..1298068,1298078..1298080, 1298090..1298092,1298156..1298158,1298162..1298173) /locus_tag="Alide_1217" /note="active site" /db_xref="CDD:143635" misc_feature order(1298144..1298146,1298228..1298230) /locus_tag="Alide_1217" /note="I-site; other site" /db_xref="CDD:143635" gene complement(1298424..1299656) /locus_tag="Alide_1218" /db_xref="GeneID:10103252" CDS complement(1298424..1299656) /locus_tag="Alide_1218" /inference="protein motif:TFAM:TIGR00710" /note="KEGG: ajs:Ajs_3344 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="drug resistance transporter, bcr/cfla subfamily" /protein_id="YP_004125867.1" /db_xref="GI:319761930" /db_xref="GO:0005215" /db_xref="InterPro:IPR004812" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10103252" /translation="MHPDAPDLWRGPRWALAILLALLGMVGPFSIDTYLPAFPAISQA LAATPVQMQQTLSAYLFAFAFMTLFHGSLSDSFGRRPVVLWGLAVFTLASMGCALSQS IGQLVVFRALQGLSAGAGIVVSRAVIRDIFPPTQAQRVMSQVTIFFGVAPAIAPMVGG WLSVHLGWHSVFWFLTGVGMLLWLANWRLLPESLPPQGRQRLHLGHLLRGYWELGTSP RFLLLALASGVPFNGMFLYVLSAPAFLGDLLGLAPTQFFWFFMTTISGIMGGAWMSGR LAGRIPPKRQIRHGFVIMLAMGLLNLGANLLFTAHAAWAMWPIGIFSFGWALMVPVVT LLVLDLYPQRRGMASSLQAFVGSTANGLVAGVVAPLVMHSTVLLALASLLMMGVGLLS WVYLHHRWPEIGRTAAHS" misc_feature complement(1298472..1299605) /locus_tag="Alide_1218" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(1298460..1299584) /locus_tag="Alide_1218" /note="bicyclomycin/multidrug efflux system; Provisional; Region: PRK11102" /db_xref="CDD:182964" misc_feature complement(order(1298577..1298579,1298586..1298591, 1298598..1298603,1298610..1298615,1298643..1298645, 1298652..1298657,1298667..1298669,1298676..1298681, 1298688..1298690,1298844..1298846,1298856..1298858, 1298865..1298867,1298877..1298879,1298889..1298891, 1298931..1298933,1298940..1298945,1298952..1298957, 1298964..1298966,1299201..1299203,1299219..1299224, 1299231..1299236,1299270..1299272,1299279..1299284, 1299291..1299296,1299303..1299308,1299444..1299449, 1299453..1299458,1299468..1299470,1299477..1299482, 1299489..1299491,1299540..1299545,1299549..1299557, 1299564..1299566)) /locus_tag="Alide_1218" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(1299844..1300329) /locus_tag="Alide_1219" /db_xref="GeneID:10103253" CDS complement(1299844..1300329) /locus_tag="Alide_1219" /inference="protein motif:PFAM:PF04314" /note="PFAM: protein of unknown function DUF461; KEGG: dia:Dtpsy_2691 protein of unknown function DUF461" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125868.1" /db_xref="GI:319761931" /db_xref="InterPro:IPR007410" /db_xref="GeneID:10103253" /translation="MQTKQPTTRLAFAAALLLSGLAHAQVSVQDAWVRATVPQQKATG AFMRLTAAQDMRLVGASSPVAGVTEVHEMKLVDNVMKMRAVPALDLPAGQAVELKPGG YHIMLLDLKQPVAQGGTVPLTLVFEGKDGQRQSQELQAPVRALGAAAAPAAGHGKHGG H" sig_peptide complement(1300255..1300329) /locus_tag="Alide_1219" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" misc_feature complement(1299925..1300248) /locus_tag="Alide_1219" /note="Protein of unknown function (DUF461); Region: DUF461; cl01071" /db_xref="CDD:194027" gene complement(1300409..1300780) /locus_tag="Alide_1220" /db_xref="GeneID:10103254" CDS complement(1300409..1300780) /locus_tag="Alide_1220" /inference="similar to AA sequence:KEGG:Ajs_3342" /note="KEGG: ajs:Ajs_3342 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125869.1" /db_xref="GI:319761932" /db_xref="GeneID:10103254" /translation="MPITMESLRRTRHLARLLLACFAVALGVAMLSPLVHAGGMERVC SATDGPRWVAKGGNDSTADARAHGLECALCLPSMLPPATVQALAAPREPAPFAAPAPR QAHVPPLSRAPFPPRAPPVQA" sig_peptide complement(1300667..1300780) /locus_tag="Alide_1220" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 38" gene complement(1300802..1301533) /locus_tag="Alide_1221" /db_xref="GeneID:10103255" CDS complement(1300802..1301533) /locus_tag="Alide_1221" /inference="protein motif:PFAM:PF00027" /note="KEGG: dia:Dtpsy_2689 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_004125870.1" /db_xref="GI:319761933" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:10103255" /translation="MTFINVPAGRVAAADCARMQALLAANPLLSGVPEAALAELAQHA RPRSHGDGQTLFFEGDAASHCLLVESGAVEVLRFAACGDERMLHRFGAGDLVAEAAMF MPHGLYPMTARAAGPTRVWRLPRTAVRAACERHPALALRLLEALSLRLYRRVNEVDWL TRSNTPQRLATYVLALAGSQGERIELPTSQRQLAARLGVRAETLSRLFAQWQARGWIH GESRSWRLCDSNALRRLVPPGADPF" misc_feature complement(1300850..1301470) /locus_tag="Alide_1221" /note="cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:31008" misc_feature complement(1301126..1301452) /locus_tag="Alide_1221" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature complement(order(1301204..1301212,1301240..1301245)) /locus_tag="Alide_1221" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature complement(order(1301126..1301128,1301138..1301146)) /locus_tag="Alide_1221" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature complement(1300868..1300987) /locus_tag="Alide_1221" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 1301609..1303762 /locus_tag="Alide_1222" /db_xref="GeneID:10103256" CDS 1301609..1303762 /locus_tag="Alide_1222" /inference="protein motif:PFAM:PF00593" /note="PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dia:Dtpsy_2688 TonB-dependent receptor" /codon_start=1 /transl_table=11 /product="tonb-dependent receptor" /protein_id="YP_004125871.1" /db_xref="GI:319761934" /db_xref="GO:0004872" /db_xref="GO:0005215" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR010917" /db_xref="InterPro:IPR012910" /db_xref="GeneID:10103256" /translation="MTSVPTPVCPLPVRVLAHSMACALALLALPAHAQQPAAELPAVT VRADGAGEGTAPLRPSAQAERERLERVPGGTNLALPQQESRLATLRDALDYQPGIVIQ DFFGATDQPRLSIRGSGIQSNPLNRGVLLLQDGMPLNEADGSFIIGLIEPRNAALISA RRGANTLTPGATTLGGEVDFQSLTGADERGSVRAEAGSFGRKALQGAVGLQGAQWDGR ISVSGDRFDGYRHHSASQREALHANLGFQGAGGFENRTYLSWTDLDFDIPTVVPKDRV RTNPRGVMGDGNTPQDQLLNVYKRDPRREATQLRLANRSRWGSDALSQELGVYWQDTD DLFNNQTSYAITHSRTTGAQWQASGGAGGPLAWRAALGWSRSSMDRDLDATNPANGTQ MQRFGAYDLTADNLQAQLGADWRLAPAWTLVGQWGWSRQSRDAASRLDGRALDQQWTF STPKIGVNWTPAPTVRWWANLSRSQEAPTFWEIVAANVAPNAPAAASSELVRLKLQRA TTFEVGGQGRWGEGTRALHWQLAVYRSQVADELMSTTDESGIKVGTYNYAGGTRHQGV EAGLSGSWPLGAAGGLEWRGSWTYSDFRFKEGIYAGNRIAGVPRHLINAEVLWRVATG SGTWRVGPSLRWMPTDTPTDHANTAGSEQDAYALLGFKLEWRSGPWTAYLLADNVTDR RYASSYAIRNQATAAQPGYLPGLGRNVAAGVTYKF" sig_peptide 1301609..1301710 /locus_tag="Alide_1222" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.722) with cleavage site probability 0.722 at residue 34" misc_feature 1301852..1303759 /locus_tag="Alide_1222" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:162535" misc_feature 1301870..1303759 /locus_tag="Alide_1222" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1301879..1301908,1301945..1301962,1301999..1302022, 1302062..1302094,1302128..1302154) /locus_tag="Alide_1222" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(1302611..1302613,1302692..1302694) /locus_tag="Alide_1222" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1303764..1304780 /locus_tag="Alide_1223" /db_xref="GeneID:10103257" CDS 1303764..1304780 /locus_tag="Alide_1223" /inference="similar to AA sequence:KEGG:Dtpsy_2687" /note="KEGG: dia:Dtpsy_2687 periplasmic component of ABC-type transport system" /codon_start=1 /transl_table=11 /product="periplasmic component of abc-type transport system" /protein_id="YP_004125872.1" /db_xref="GI:319761935" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10103257" /translation="MSSFSCLNRRAALRAAGALALGGLPAARAAAAPLPRIVLSGPPA IVSAPLIHMAETNALAAVAAQTRFTSWRDPDQLRVMALGGKADVLAMPSNVAANLYNR GAGVTLLNISTWGALWIVTRDGARRTLADFRGEEIAVPFRGDMPDLMLQLLAARQGLD ARRDFRVRYVPTPMEAMQLLITRRVRHALLAEPAVSMALRKTQSFPVGLIAPELHRGA DLQQEWGRVFQRAPRIPQAGIAAVGAVRAQPAVLAAVAEAYARSVAWCRANPLECGRM VAARMDLLTPEAVADAVATSQLDAVPAQRARAEIDFFFQQLFARDPALLGGKLPDDKF FHTP" sig_peptide 1303764..1303859 /locus_tag="Alide_1223" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.679 at residue 32" misc_feature 1303872..>1304384 /locus_tag="Alide_1223" /note="ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715" /db_xref="CDD:31059" gene 1304777..1305583 /locus_tag="Alide_1224" /db_xref="GeneID:10103258" CDS 1304777..1305583 /locus_tag="Alide_1224" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2682 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125873.1" /db_xref="GI:319761936" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103258" /translation="MKLLWRLLRGMPAYLWSGWGAAASLLLFVALWELGAGLYGPLIL PTPLDTLATLRGLVRAGEAWPELAITARRALTGLLLAAGVGSALGLLAGLSMTASMMA RPWVTLLLGMPPIAWLVLAMLWFGAGDGTPVFTVFVACLPVVFIGALQGTRTLDHHLK DMARAYRLPWRMRLFDLYLPHVAAYLFPAWITALGSSWKVAVMAELLATSDGVGAALA VTRSHLDTSASLAWICAVVGSLLVLEYALLEPVKRELERWRSAGGAPPSA" misc_feature 1304819..1305559 /locus_tag="Alide_1224" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600" /db_xref="CDD:30945" misc_feature 1304861..1305559 /locus_tag="Alide_1224" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 1305603..1306463 /locus_tag="Alide_1225" /db_xref="GeneID:10103259" CDS 1305603..1306463 /locus_tag="Alide_1225" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_2681 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125874.1" /db_xref="GI:319761937" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103259" /translation="MTTPPATPPPLLQVRGLHHAYGPTAVLQDIDLDLPAGRIAALVG PSGCGKTTLLHLCAGLLAPQQGRIARPEAPVAVMFQQPRLLPWMATLDNIALGLRAQG VPRAQRRERARAAALALGLPEASLAQYPAELSGGMQSRAALARALVLEPALLLMDEPF SALDVGLRGQLHQLLLARQAQSGMAVLLITHDLMEAVRLADEVLVLAAAPGRIIARYR PPGEARARGEALVHRCAAQLLQHPEVRAAFGLPEQDAPDAAGTPPDEEGGGAWLQAPH CAVPRASHGC" misc_feature 1305633..1306325 /locus_tag="Alide_1225" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116" /db_xref="CDD:31313" misc_feature 1305636..1306262 /locus_tag="Alide_1225" /note="NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars...; Region: ABC_NrtD_SsuB_transporters; cd03293" /db_xref="CDD:73052" misc_feature 1305732..1305755 /locus_tag="Alide_1225" /note="Walker A/P-loop; other site" /db_xref="CDD:73052" misc_feature order(1305741..1305746,1305750..1305758,1305840..1305842, 1306071..1306076,1306173..1306175) /locus_tag="Alide_1225" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73052" misc_feature 1305831..1305842 /locus_tag="Alide_1225" /note="Q-loop/lid; other site" /db_xref="CDD:73052" misc_feature 1305999..1306028 /locus_tag="Alide_1225" /note="ABC transporter signature motif; other site" /db_xref="CDD:73052" misc_feature 1306059..1306076 /locus_tag="Alide_1225" /note="Walker B; other site" /db_xref="CDD:73052" misc_feature 1306083..1306094 /locus_tag="Alide_1225" /note="D-loop; other site" /db_xref="CDD:73052" misc_feature 1306161..1306181 /locus_tag="Alide_1225" /note="H-loop/switch region; other site" /db_xref="CDD:73052" gene 1306585..1307754 /locus_tag="Alide_1226" /db_xref="GeneID:10103260" CDS 1306585..1307754 /locus_tag="Alide_1226" /inference="protein motif:PFAM:PF05940" /note="PFAM: NnrS family protein; KEGG: dia:Dtpsy_2680 NnrS family protein" /codon_start=1 /transl_table=11 /product="nnrs family protein" /protein_id="YP_004125875.1" /db_xref="GI:319761938" /db_xref="InterPro:IPR010266" /db_xref="GeneID:10103260" /translation="MRPFFLLAMVSALGLLGLWGLALGAGLPPPQVAGGPIVWHVHEL VFGFAMAGVAGFALTALPEFTGEAGASRGQLRALVLLWLLARAGFWASGWAGAAALWL AGAAQVALPLAVAAVLARALRSPAGRAHASFGWALLALAGMALGFYADALGGAPGLRW LHATLGVLMLLIVVAASRISMRMVNRAIEQVTPGAPPYLARPPKRHLAALCITLATLA QFARPGSALAGWLALAAAAAMFHLMSDWHVGPALWRRRFPLLLYAMYACMALGYGALG LAYLGALPGTGAGWHLLGAGAVGLGVFVVIAIAGRAHAGLLPDPGPWVPLGGALVLAA TALRAAAAVLGWGGIALAAAAVLWCLAYGVLLWRVGPGLWRPRTDGRDGCDGPAP" sig_peptide 1306585..1306659 /locus_tag="Alide_1226" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.762 at residue 25" gene 1308074..1310029 /locus_tag="Alide_1227" /db_xref="GeneID:10103261" CDS 1308074..1310029 /locus_tag="Alide_1227" /inference="protein motif:PFAM:PF07715" /note="PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: dia:Dtpsy_2686 TonB-dependent receptor plug" /codon_start=1 /transl_table=11 /product="tonb-dependent receptor plug" /protein_id="YP_004125876.1" /db_xref="GI:319761939" /db_xref="GO:0004872" /db_xref="GO:0005215" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR012910" /db_xref="GeneID:10103261" /translation="MLLTHSFALRRLCRPHPLAVASTAALLCLAGAARAEVVAAAPLP AVTVTATLTEQDARTAPASVTVITAQDLAERNAADLLDAVRGAPGITLSARQVGGRKT LALRGLEGKHTLTLIDGRRISASDDVIGHSDYQYGWLPISAIERVEIIRGPMSALYGS EALGGVVNIISKKPKDRWIGSVGITGSHAVGSDGASEAGTSIFAAGPLTDRLRMSVNA EYAHRDAVPEKEDPRYSEIEGRKPRSLGLNAEFDLAPGHVLEAGVTDGKEQRFYDDVS GAKPYFNRYDLDRRQTHVGWRGEVGGWKTQLRAYRSEFSVRNSRTNGVAPTRPQDMTD DVVDGHASTRFGSHQFTVGDEWRNEELVNAGLTTGSDDVTHKALFVQDEFALGKNLIA TLGLRADHHGIFGSELSPRAYLVWEAGSALVVKSGFGHAFKAPTLKQISPNYVGAEGP HTFMGNADIKPETSNSFEIGADWQVSPAWSLRATAFHTEVKDLITYRLLQQVGPRRIY QYDNVDAARIQGLEAGFTWAITPQLAWNTGATLLRTRDKTTGKRLSDRPSTSVASHLA WRVAGWDARLGLQYTGSQDSSGYRLPAYTLWNASVGRAWKLNATQSLNLRAGLENMGD VRLAEKSPNFGYAEQGRRVFVTARLDF" sig_peptide 1308074..1308181 /locus_tag="Alide_1227" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.969 at residue 36" misc_feature 1308236..1310026 /locus_tag="Alide_1227" /note="Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]; Region: FepA; COG4771" /db_xref="CDD:34384" misc_feature 1308260..1310026 /locus_tag="Alide_1227" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1308260..1308289,1308317..1308346,1308380..1308397, 1308416..1308439,1308494..1308526,1308560..1308586) /locus_tag="Alide_1227" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(1309025..1309027,1309061..1309063) /locus_tag="Alide_1227" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1310081..1314148 /locus_tag="Alide_1228" /db_xref="GeneID:10103262" CDS 1310081..1314148 /locus_tag="Alide_1228" /EC_number="6.6.1.2" /inference="protein motif:PRIAM:6.6.1.2" /note="KEGG: dia:Dtpsy_2685 cobaltochelatase; PFAM: CobN/magnesium chelatase" /codon_start=1 /transl_table=11 /product="cobaltochelatase" /protein_id="YP_004125877.1" /db_xref="GI:319761940" /db_xref="InterPro:IPR003672" /db_xref="GeneID:10103262" /translation="MTGNHKFRWLLCAALLLLAGAARAASVLFIATGNVPQGKFHQLA EIARPHGLTVEVRYLNSLPADVDAGLWRGRDAVFFDSYQQDEVRDRLVRALPGLAAPN AWLYDQRPAWGGGLPEAVARRLIDYYASGGRQNYEGFFATLAAQLAGGNAMAAAPEPV VFPKTGVYHPRLPGLVTADVHTYLRRQGVDPAAPGRKPIVAISLHQQYIGSMQTAFID DMIARVEAGGAAALPFYTPMMGEGGFAKVLQPGGPGQPVLADVLINTQIMLNAEERRG EFEQMGIPVIQAMTHRRGDEAEWAASQQGVAIMDVPFYMAQAEYAGVTDIQVASATRK GDEQIMPIAPQSAAVAAKALNLVKLQRKPNADKQVAVMFWNYPAGEKNLSASFLNVPR SLQSTLAGMAAAGYRTEVPDETHLIILLQRLLAPAYRGGELEPLLRDGLAALLPVKDY RAWLSSLPQSTQDAIRSAWGAPEKSHWVIRRGGQDFFAIPRLQLGRITLLPQPGRSGM APGSQDARAKEKEIYHSTTDLPPHHYLATYLWTRQHNDALVHYGTHGTQEWLPGKERG LSVYDAPLLALGDIPVAYPYIADNIGEATQAKRRGRATIVSHQTPPFAPGGLHDALTQ MHDLLHQWQAQDEGAVRERMAADLLAAAKKERVIADMGWTEGRVKERFADFVQVLHNH LHELAQTAQPQGLHTLGRAPEELHRLGTVLLMLGKNFWEAAAQHAGVPAADLDEALVG PWDRLERTAPYQLLRRHVVAGESLDGLSPGLQKALQDARQAYANLGAQGELPGLLAVL DGRYLPTSYGGDPIKSPDAYPTGRNLYGFDPSRVPTRQAWEAGKQAAENMLAEHKKLH GKLPRKLTFSLWSVETMRHFGMLEAQALWLLGVEPVWDRGGRVTGVKLVEREQLGRAR VDVVLSATGLYRDHFPNVMQQLARAVLLASRARDEADNPVAANSQRIAQKMMVAGADA KAAELAGATRIFASESGRYGTGLDDAALATDTWKGKAEGDRKLARLYLDKMQYAYGPD ESQWGQAGVAGAAAAGTGKGGKAVNLYAEHLSGTEGAVLSRSSNLYGMLTTDDPFQYL GGIALAVRHLDGKAPELYISNLRGSGSGRVEGAAQFLAKELATRQFHPGYIQGLMKEG YAGTLQVLDATNNFWGWTATAREIVRDDQWQEMVDVYVRDKHQLGLKDWFEAKNPHAL AQTMERMLEAARQGYWQADAATVRELKERWRDLAQRFDVRTDNAAFQRYVGAGQGAAG YGLAAGTPGAAAAAAPAPGAQAAEPPPQADPSPVPPPPPISGMRLEQVREQPRDSAVP AWQALWVALVLGAVMLGGGWWQRRGRVSSKLAFGA" sig_peptide 1310081..1310155 /locus_tag="Alide_1228" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.745) with cleavage site probability 0.743 at residue 25" misc_feature 1310450..1313764 /locus_tag="Alide_1228" /note="CobN/Magnesium Chelatase; Region: CobN-Mg_chel; pfam02514" /db_xref="CDD:145578" gene 1315038..1315634 /locus_tag="Alide_1229" /db_xref="GeneID:10103263" CDS 1315038..1315634 /locus_tag="Alide_1229" /inference="similar to AA sequence:KEGG:Suden_1229" /note="KEGG: tdn:Suden_1229 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125878.1" /db_xref="GI:319761941" /db_xref="GeneID:10103263" /translation="MRDQLQSRLEQARAAEQGIAQAALAGATVQQLAERLDRLQTLKR EAAQVQIDAAQRIRAQLSAAQYAQLRQRAQATLAAAPAPAEYALLLPGHLPHLMPFVA QLGASAEHQQSLSRYADEQVRPALRPRLQQAQQLEQEIGRAVLDGRSAGELAPQLGRL AQLKREAAEIHLRCIAHVRQTLPPEQYARLVALSTAKA" gene 1315697..1316233 /locus_tag="Alide_1230" /db_xref="GeneID:10103264" CDS 1315697..1316233 /locus_tag="Alide_1230" /inference="similar to AA sequence:KEGG:Dtpsy_2684" /note="KEGG: dia:Dtpsy_2684 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125879.1" /db_xref="GI:319761942" /db_xref="GeneID:10103264" /translation="MSHLLESLMYQASQVFLFPTLVVITVLFVYAFFLLGMFAMQWWQ RRKAQGGQPTRGHHLLTWARARPGASADELDVKAHQLLELPRIATRVAPMLGLIATMI PMGPALKGLSDGNLGQVSDNLAVAFAAVILSLIAAAITFWVVSVQRRWLAEELVWLQR QGVRTPAAGHMAEAGGEA" misc_feature <1315784..>1316041 /locus_tag="Alide_1230" /note="Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811" /db_xref="CDD:31153" gene 1316230..1316553 /locus_tag="Alide_1231" /db_xref="GeneID:10103265" CDS 1316230..1316553 /locus_tag="Alide_1231" /inference="protein motif:PFAM:PF09919" /note="PFAM: Protein of unknown function DUF2149; KEGG: dia:Dtpsy_2683 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125880.1" /db_xref="GI:319761943" /db_xref="InterPro:IPR018676" /db_xref="GeneID:10103265" /translation="MKFLDETEADDPILSVVNLIDVFLVVIAALLISVAKNPLLSPFS KQDVTVITDAGKPSMEVIQKRGEKIEKYKASGEIGEGDGEKAGVAYRMKDGSMVYVPE TGEGH" misc_feature 1316266..1316535 /locus_tag="Alide_1231" /note="Uncharacterized conserved protein (DUF2149); Region: DUF2149; cl01960" /db_xref="CDD:154679" gene complement(1316742..1316815) /locus_tag="Alide_R0012" /note="tRNA-Lys3" /db_xref="GeneID:10103266" tRNA complement(1316742..1316815) /locus_tag="Alide_R0012" /product="tRNA-Lys" /db_xref="GeneID:10103266" gene complement(1316917..1317996) /locus_tag="Alide_1232" /db_xref="GeneID:10103267" CDS complement(1316917..1317996) /locus_tag="Alide_1232" /inference="similar to AA sequence:KEGG:SG1173" /note="KEGG: sgl:SG1173 phage integrase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125881.1" /db_xref="GI:319761944" /db_xref="GeneID:10103267" /translation="MGRARKDGDPLGLAGTRLSFKHGAFYYRHRDGRWERVGTDVKVA KERAALYNDPQGVYGTVAYWLDQFIVDCTARVAAGTLSARTLADYTENIVPLKAYFGA MLPEHIEPQHVQAYLDIGAKAGRPVRANREKACLSSCLSWLMRTGRTTLKVNPCMQAS GTKGNPESKRERYVTHAEYIEVYEAAGTQVRLLMELTYRTLQRPESDLLGWTPAVLAR DPHSGARVLSFIQGKTGMRVKIALTERLESLIHRAMGKVPVISQPLVHNRKGEGYTYS GITAMLTAAIRKVNKAREAKGLPKLESFGFRDLKGKGATDMWLAGHPIEQIQLLCGHS DKATTEKYIKARWNATAQPNETAIA" misc_feature complement(<1317385..1317900) /locus_tag="Alide_1232" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(1316959..1317483) /locus_tag="Alide_1232" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(1316959..1317483) /locus_tag="Alide_1232" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature complement(order(1316971..1316973,1317076..1317084, 1317298..1317300,1317385..1317390)) /locus_tag="Alide_1232" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature complement(order(1316971..1316973,1316998..1317000, 1317067..1317069,1317076..1317078,1317298..1317300, 1317388..1317390)) /locus_tag="Alide_1232" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature complement(order(1316971..1316973,1316998..1317000, 1317067..1317069,1317076..1317078,1317388..1317390)) /locus_tag="Alide_1232" /note="active site" /db_xref="CDD:29495" gene complement(1317980..1318255) /locus_tag="Alide_1233" /db_xref="GeneID:10103268" CDS complement(1317980..1318255) /locus_tag="Alide_1233" /inference="similar to AA sequence:KEGG:Aave_1735" /note="KEGG: aav:Aave_1735 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125882.1" /db_xref="GI:319761945" /db_xref="GeneID:10103268" /translation="MIHLPPYLTDAEIAGMCEPLIQPAAQCRRLKAMGLHFVQKPNGR PLVMRTELDRVLGAGRFAGGQDAKVTAPNAAALLQHLGRKGIHGARA" gene complement(1318258..1318716) /locus_tag="Alide_1234" /db_xref="GeneID:10103269" CDS complement(1318258..1318716) /locus_tag="Alide_1234" /inference="similar to AA sequence:KEGG:Pnap_2277" /note="KEGG: pna:Pnap_2277 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125883.1" /db_xref="GI:319761946" /db_xref="GeneID:10103269" /translation="MKKHPTRHKPDPLCTPVGRALALQALRRDMLDIGLACLAVEHGS EQRALLARLAFMIGIGAELAAALPVPGDNRAGMHQALAEVVRMACDGCAWDAAWAAQL QLALEISGELMLEHSSHAMRVLPGARALADDIAKGNIRPDAVAPLEWLEQ" gene complement(1318713..1318997) /locus_tag="Alide_1235" /db_xref="GeneID:10103270" CDS complement(1318713..1318997) /locus_tag="Alide_1235" /inference="similar to AA sequence:KEGG:SNSL254_p_0061" /note="KEGG: see:SNSL254_p_0061 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125884.1" /db_xref="GI:319761947" /db_xref="GeneID:10103270" /translation="MKTLVLRLKAVYFDAIRDGQKLEEFRERTPYWRQRLEGRTFDRV VLTKGYPAAGDESRRLVRAWRGYRETTITHPHFGAAPVEVFAIDVSEAST" gene complement(1319004..1320149) /locus_tag="Alide_1236" /db_xref="GeneID:10103271" CDS complement(1319004..1320149) /locus_tag="Alide_1236" /inference="protein motif:PFAM:PF00145" /note="PFAM: C-5 cytosine-specific DNA methylase; KEGG: mlo:mlr7992 DNA modification methylase" /codon_start=1 /transl_table=11 /product="c-5 cytosine-specific DNA methylase" /protein_id="YP_004125885.1" /db_xref="GI:319761948" /db_xref="GO:0003677" /db_xref="InterPro:IPR001525" /db_xref="InterPro:IPR018117" /db_xref="GeneID:10103271" /translation="MLGEGVRAAFGLLGIKHRTVCYVEREAPAAAQIARLMEAGALDS APIWSDLLTFDGTAWRGCVDFIIAGFPCQDISIAGRRAGLDGKRSGLFFDILDIADAC QARGLVLENVAALATATASAVDEAEGTLEERAAARVVGELADRGWDAEWLTISASDVG ASHGRARWFCLAWRRVGDAKCSRRQQARRRSGEHTGRQLEPGCGAMDDAERVELAGQR IHTRPRPEGHGAPDLDGEGPAMSDATGDGRHEGWAESGGQQGRPDAAQRGGAVAYAGQ PGLPYPEQPEQPGNAQPLGRRAVAELHRTPFFAPGPVDPRWPEIVANRPDIAPAVESG VRMLANGMAYLVDESRTHQLRQIGNGVVPLQAAAALVELMRRAEGRG" misc_feature complement(1319007..1320137) /locus_tag="Alide_1236" /note="Site-specific DNA methylase [DNA replication, recombination, and repair]; Region: Dcm; COG0270" /db_xref="CDD:30619" misc_feature complement(<1319628..1320002) /locus_tag="Alide_1236" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" misc_feature complement(order(1319649..1319651,1319655..1319657, 1319778..1319783,1319787..1319789,1319886..1319888, 1319904..1319906,1319913..1319924,1319931..1319936, 1319943..1319945)) /locus_tag="Alide_1236" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:73191" misc_feature complement(order(1319649..1319651,1319655..1319657, 1319781..1319783,1319787..1319789,1319922..1319924, 1319934..1319936,1319943..1319945)) /locus_tag="Alide_1236" /note="substrate interaction site [chemical binding]; other site" /db_xref="CDD:73191" gene complement(1320190..1320402) /locus_tag="Alide_1237" /db_xref="GeneID:10103272" CDS complement(1320190..1320402) /locus_tag="Alide_1237" /inference="similar to AA sequence:KEGG:Rsph17029_0652" /note="KEGG: rsh:Rsph17029_0652 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125886.1" /db_xref="GI:319761949" /db_xref="InterPro:IPR000048" /db_xref="GeneID:10103272" /translation="MSQSRLSSLAETCISIAIGFVVSLVLTALVLPAYGHAVTFGQNL QITGIFTVASIARGYLVRRAFNRWGR" sig_peptide complement(1320289..1320402) /locus_tag="Alide_1237" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.959) with cleavage site probability 0.549 at residue 38" gene complement(1320399..1321055) /locus_tag="Alide_1238" /db_xref="GeneID:10103273" CDS complement(1320399..1321055) /locus_tag="Alide_1238" /inference="similar to AA sequence:KEGG:AMED_0550" /note="KEGG: amd:AMED_0550 exopolysaccharide biosynthesis protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125887.1" /db_xref="GI:319761950" /db_xref="GeneID:10103273" /translation="MSNSSDQTTLDQYRRMFQAACSALGEISDALGVEPDEGGAEPIL EAIEELRATVSQRDELLEFVKFVVSEWGHDGFGCELEDGESSVIDRARVLIAKAEGNG APAAVALPADLHELLMHVVCDTRHPERQIQASRMLEQIGRASPQPPAQEPAEPLPPPG IHAGVHYATFLRREANKHPEPKAGALRNAARMMDVLLAEVRTLRRELVEAKAQEGGAA " gene complement(1321052..1321270) /locus_tag="Alide_1239" /db_xref="GeneID:10103274" CDS complement(1321052..1321270) /locus_tag="Alide_1239" /inference="similar to AA sequence:KEGG:Daci_2614" /note="KEGG: dac:Daci_2614 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125888.1" /db_xref="GI:319761951" /db_xref="GeneID:10103274" /translation="MNAIHQVLQLRSYRAHLVPQHVNLSDVEDMADAKLLPTIQLKAA SATQAEALAHLASGKQVLRVERVEGGAA" gene complement(1321295..1321513) /locus_tag="Alide_1240" /db_xref="GeneID:10103275" CDS complement(1321295..1321513) /locus_tag="Alide_1240" /inference="similar to AA sequence:KEGG:An16g04440" /note="KEGG: ang:An16g04440 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125889.1" /db_xref="GI:319761952" /db_xref="GeneID:10103275" /translation="MNATRTEPRQHCYQRPMDGGYVPAAATTTDHLRAVFAAERERLA AAARPRRKRRQPAAPEVNPQQAQLQLVA" gene complement(1321519..1321791) /locus_tag="Alide_1241" /db_xref="GeneID:10103276" CDS complement(1321519..1321791) /locus_tag="Alide_1241" /inference="similar to AA sequence:KEGG:Bpro_2970" /note="KEGG: pol:Bpro_2970 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125890.1" /db_xref="GI:319761953" /db_xref="GeneID:10103276" /translation="MVKKQATERTVAAQARRGMAGAVASDYSLRTKVLLAARDRCDEL QDGQAARDDMKRDVLATPDELLSDLLTAFLSVRIDCALLIPTTAKE" gene complement(1321785..1323761) /locus_tag="Alide_1242" /db_xref="GeneID:10103277" CDS complement(1321785..1323761) /locus_tag="Alide_1242" /inference="protein motif:PFAM:PF05840" /note="PFAM: replication gene A; KEGG: dac:Daci_2615 replication gene A" /codon_start=1 /transl_table=11 /product="replication protein a" /protein_id="YP_004125891.1" /db_xref="GI:319761954" /db_xref="GO:0003677" /db_xref="InterPro:IPR008766" /db_xref="GeneID:10103277" /translation="MPTIPRKLPNASLAEWNEKKPTLYMAREHLERVIRCAPASWQAA IRGRFDNAVPPVMAAVQTARDFLEQPPEWAQAWDLMQAIADFEDEFGAASLWNLDDQE ICTMAKKLAGEADELDALAIGLGATLADRVDSIRLLVRCVGITEDKPIQGEPAIKRAQ DAAWWRRRLRVHVARVVEGGNLGMGLVHKGRGGYVSDDGLRRRGAQLKRNAEALERTL YRNEAGQVFTLRELAELGTANPINRGGELMTRIRGAEEYADARAHVGLFITLTLPSKF HPMKLGSGGRVVPNKRFVPGTTPRHGQLWLRDKWAKTRAALARKGVRMYGLRVAEPHH DATPHWHALIWAEDEAGAQAIEDRIRHYWLSDDGDERGAAENRVNIKRMVKGGAAGYV AKYIAKSVGHLALVEHQDVVDGQQIVMDFGPTDPKNLQETGAGHRRVDAWAATWGIRQ FQTIGMPSVTVWREMRRVTKDQLELFTREGDRDTVRAYQACHRHGNMRADWRLFMEAM GGHALPRCRWHLRTAHRTPEAGQVNRYGEEVKVGRVVGLRAQRGRMCGHWLVSRRIAW TPVIGEGTHAAHGMDAGDAAGQAQGHGNGPQGAQSRAALAAPWTGFNNCTARITHELS RLAFGRGDHEIEDWCTPEVVAHYRALREAEPCPW" misc_feature complement(1322355..1323305) /locus_tag="Alide_1242" /note="Bacteriophage replication gene A protein (GPA); Region: Phage_GPA; pfam05840" /db_xref="CDD:191383" gene complement(1323765..1324058) /locus_tag="Alide_1243" /db_xref="GeneID:10103278" CDS complement(1323765..1324058) /locus_tag="Alide_1243" /inference="similar to AA sequence:KEGG:Daci_2616" /note="KEGG: dac:Daci_2616 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125892.1" /db_xref="GI:319761955" /db_xref="GeneID:10103278" /translation="MKANEMPRLMKLRDEFVRLASAGRFHDAASREWRELPHNWRMAL LMVAGIGNDVDSLSTLASRSWREFPEAERIAMRVVIRTGKRHLGGVTALASKV" gene complement(1324213..1324371) /locus_tag="Alide_1244" /db_xref="GeneID:10103279" CDS complement(1324213..1324371) /locus_tag="Alide_1244" /inference="similar to AA sequence:KEGG:AMED_8985" /note="KEGG: amd:AMED_8985 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125893.1" /db_xref="GI:319761956" /db_xref="GeneID:10103279" /translation="MRVKPFRVAVLACAWVGVGAWANSAAMVCAGMVLALVGLGALVA TIAEGGTR" sig_peptide complement(1324303..1324371) /locus_tag="Alide_1244" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.942 at residue 23" gene complement(1324362..1324787) /locus_tag="Alide_1245" /db_xref="GeneID:10103280" CDS complement(1324362..1324787) /locus_tag="Alide_1245" /inference="similar to AA sequence:KEGG:RSc1667" /note="KEGG: rso:RSc1667 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125894.1" /db_xref="GI:319761957" /db_xref="GeneID:10103280" /translation="MSSRNTSRRSTAAQPRTLEAQALHDAHQGHAARLAAIKRMASKL RMLDAYMPAVRAAGITVRGDELNCWGGLAIYVSGPMFNAQRNATLEKVLREQGMRETR RKENADGSYTVDLKKGHLTVCITVEAHRLPKPQEAAPCA" gene complement(1324906..1325319) /locus_tag="Alide_1246" /db_xref="GeneID:10103281" CDS complement(1324906..1325319) /locus_tag="Alide_1246" /inference="protein motif:PFAM:PF04606" /note="PFAM: transcriptional activator Ogr/delta; KEGG: dac:Daci_2617 transcriptional activator Ogr/delta" /codon_start=1 /transl_table=11 /product="transcriptional activator ogr/delta" /protein_id="YP_004125895.1" /db_xref="GI:319761958" /db_xref="GO:0030528" /db_xref="InterPro:IPR007684" /db_xref="GeneID:10103281" /translation="MLHSTAEHEALQAAKAERARTRHTGRKLRYEGTRMACPMCAAQC EIRTSLMVSKTMRETAYQCTNVECGCTFVVGAEILRLLNPGATPDPKVNIPLSTHVRR DMVRVVLDNASEAEHTARFTTPVTGDLFAGGADTS" misc_feature complement(1325074..1325211) /locus_tag="Alide_1246" /note="Ogr/Delta-like zinc finger; Region: Ogr_Delta; cl04623" /db_xref="CDD:194929" gene complement(1325359..1325628) /locus_tag="Alide_1247" /db_xref="GeneID:10103282" CDS complement(1325359..1325628) /locus_tag="Alide_1247" /inference="similar to AA sequence:KEGG:PC1_2629" /note="KEGG: pct:PC1_2629 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125896.1" /db_xref="GI:319761959" /db_xref="GeneID:10103282" /translation="MMTTGKQHPTSFKALVDANRAAGRLDEPAPPAEKDAAQKMRNTG MRLTPDEYTQAQQLAAADERSMVRFCRRMYLRGLESFLAEQGGKH" gene complement(1325631..1325846) /locus_tag="Alide_1248" /db_xref="GeneID:10103283" CDS complement(1325631..1325846) /locus_tag="Alide_1248" /inference="similar to AA sequence:KEGG:AAur_4085" /note="KEGG: aau:AAur_4085 transcriptional regulator" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125897.1" /db_xref="GI:319761960" /db_xref="GeneID:10103283" /translation="MQTQETTVEVSAELQHKLERLRRAYRLPSTTAVLELLISSQIDQ SVFAMTGIRPGPRMAIDNTRPDTGREG" gene complement(1325865..1326086) /locus_tag="Alide_1249" /db_xref="GeneID:10103284" CDS complement(1325865..1326086) /locus_tag="Alide_1249" /inference="similar to AA sequence:KEGG:Ksed_24630" /note="KEGG: kse:Ksed_24630 capsular exopolysaccharide biosynthesis protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125898.1" /db_xref="GI:319761961" /db_xref="GeneID:10103284" /translation="MAYDDKEQRREFRHTVRFKKADDQLITVLAARLGVQKATLIQNM ALLAAEKELQKIGLGGQQQAAAGGPALHC" gene 1326189..1326905 /locus_tag="Alide_1250" /db_xref="GeneID:10103285" CDS 1326189..1326905 /locus_tag="Alide_1250" /inference="protein motif:PFAM:PF00717" /note="KEGG: aav:Aave_3589 phage repressor; manually curated; PFAM: Peptidase S24/S26A/S26B, conserved region" /codon_start=1 /transl_table=11 /product="peptidase s24/s26a/s26b, conserved region protein" /protein_id="YP_004125899.1" /db_xref="GI:319761962" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR019759" /db_xref="GeneID:10103285" /translation="MTTKKDKSTAENERITLQIGQRLKEERKRLGLKATDFESHGGWP ASTIYGWESGKASPKSEFYANTQELGLDLQYIITGRRTAGLPSGPAPAPAGDSDSISL PLLSATGSMGNGNDLITEDVILGEVPVSRKWLALNLPGSRPEALQLVHAYGDSMGDTL RSGDFAIVDTDYQFADVSGVYVLQANNQLFIKRISRKLDGTHEITSDNPNVRTVEVLD GSQQVRICGRVVYGWNGRRF" misc_feature 1326246..1326431 /locus_tag="Alide_1250" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" misc_feature 1326630..1326878 /locus_tag="Alide_1250" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature order(1326651..1326653,1326762..1326764) /locus_tag="Alide_1250" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 1327010..1327720 /locus_tag="Alide_1251" /db_xref="GeneID:10103286" CDS 1327010..1327720 /locus_tag="Alide_1251" /inference="similar to AA sequence:KEGG:NT01EI_3144" /note="KEGG: eic:NT01EI_3144 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125900.1" /db_xref="GI:319761963" /db_xref="GeneID:10103286" /translation="MYAILGLVFVTLFIWVSDAVTLRNRDKQAGAPVGSIYSYMRPAW RLAQENHQRSKAASTGAARHSSISLPCTFSFSYADHHGNRARRTVNITGISSSGGQAY LEGFCRSRMDNRTFRVDRIQGDLTDAETGELIPVKRLLSSVHTRSSMDYKPLAPAPKS STTKEWKTAVFFAGFRGGKLDELEGLAAAAGWQIRWTISPTVDYVVRNGSAGKKQLAE ADNLGIDVIDEDTFRALL" misc_feature <1327229..>1327378 /locus_tag="Alide_1251" /note="Predicted transcriptional regulator [Transcription]; Region: COG2378" /db_xref="CDD:32525" misc_feature <1327601..1327717 /locus_tag="Alide_1251" /note="NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]; Region: Lig; COG0272" /db_xref="CDD:30621" gene complement(1328007..1328576) /locus_tag="Alide_1252" /db_xref="GeneID:10103287" CDS complement(1328007..1328576) /locus_tag="Alide_1252" /inference="similar to AA sequence:KEGG:Aave_1749" /note="KEGG: aav:Aave_1749 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125901.1" /db_xref="GI:319761964" /db_xref="GeneID:10103287" /translation="MQPPSSVIELAEKHSQEVARFSLAGLEEARKRAHALLVLLLAGG GALGGLGLARADTLPHLPLAAAALAGAVHWFALAAYVAWQASTTAAVRSWATPGLAVE GYGKWLAYAKAANTEAATLGGPANGVDALQELRLEAVRNCEQAAHGYRTASSAAYAVV DRAYRLAACMPISAAAAAALALAWGGLGG" gene complement(1328652..1329101) /locus_tag="Alide_1253" /db_xref="GeneID:10103288" CDS complement(1328652..1329101) /locus_tag="Alide_1253" /inference="protein motif:PFAM:PF10387" /note="PFAM: Protein of unknown function DUF2442; KEGG: avn:Avin_37320 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125902.1" /db_xref="GI:319761965" /db_xref="InterPro:IPR018841" /db_xref="GeneID:10103288" /translation="MSTKQFTITAAKALADGVLSLTFADGETMRVQVAPIVRKHPTLR ALADPATFRRVKVGEWGGSVQWAGNDALELAADNLRARAIEQAGGYSHELIMEWMARH GLTLDSAAQALGLSRRMLAYYRSGEKPVPRTVALACLGWEAEQRMAA" misc_feature complement(1328853..1329080) /locus_tag="Alide_1253" /note="Protein of unknown function (DUF2442); Region: DUF2442; pfam10387" /db_xref="CDD:150972" gene complement(1329098..1329328) /locus_tag="Alide_1254" /db_xref="GeneID:10103289" CDS complement(1329098..1329328) /locus_tag="Alide_1254" /inference="similar to AA sequence:KEGG:ebA5912" /note="KEGG: eba:ebA5912 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125903.1" /db_xref="GI:319761966" /db_xref="GeneID:10103289" /translation="MPTLARLAQSTITMYAGDHLPPHFHVRMNDGREVLIEIATLEVL RGSVSKRELAEAVAWADANRAALAAKWKELNP" gene complement(1329380..1330393) /locus_tag="Alide_1255" /db_xref="GeneID:10103290" CDS complement(1329380..1330393) /locus_tag="Alide_1255" /inference="similar to AA sequence:KEGG:Daci_2620" /note="KEGG: dac:Daci_2620 late control D family protein" /codon_start=1 /transl_table=11 /product="late control d family protein" /protein_id="YP_004125904.1" /db_xref="GI:319761967" /db_xref="InterPro:IPR019794" /db_xref="GeneID:10103290" /translation="MDAVQAYGYATPVFELTVAGRSITRTVNSRLIQLTLAESRGDEA DQLDIEIDDSDGRMAIPSKGEEITLALGWAGGRMTDKGTFEVDEIEHSGAPDRLTIRA RSADMKRQLRTRAEHSYHGQTLGEIVRTIAARNGLQAKVDATLAGVRVEHIDQTHESD LHFATRLAKQYDAVCTVKKGRLAFIPINGSRNAAGVELEGRTLTRTDGDQHRYHTAER NAYSGVRAYWHDAARAEKRSVLVGTEENEKRLKDTYGSESDALAAARAEMGRIERGKA TMELTLALGQPELMPQTPLRLQGFKPQIDATPWLVVKITHTLGDGGFTSRLELETGKD AQE" misc_feature complement(1329383..1330372) /locus_tag="Alide_1255" /note="Phage protein D [General function prediction only]; Region: COG3500; cl12180" /db_xref="CDD:175410" misc_feature complement(1329395..1330360) /locus_tag="Alide_1255" /note="Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954" /db_xref="CDD:147871" gene complement(1330393..1330836) /locus_tag="Alide_1256" /db_xref="GeneID:10103291" CDS complement(1330393..1330836) /locus_tag="Alide_1256" /inference="protein motif:PFAM:PF06995" /note="PFAM: P2 GpU family protein; KEGG: dac:Daci_2621 P2 GpU family protein" /codon_start=1 /transl_table=11 /product="p2 gpu family protein" /protein_id="YP_004125905.1" /db_xref="GI:319761968" /db_xref="InterPro:IPR009734" /db_xref="InterPro:IPR016912" /db_xref="GeneID:10103291" /translation="MLMSLGLFVFGLDTLAFDTLRRQTAWRHPSNSRVGARPARQFVG PGDDSITLSGVLAPEFKGTARSLDTLRKMADEGKAWAMVSGAGDVFGAWVIENMSETG TIFTRDGKARRIEFELQLARTDDSHAEGSGGVDPWPDDDYWEWWM" misc_feature complement(1330459..1330821) /locus_tag="Alide_1256" /note="Phage P2 GpU; Region: Phage_P2_GpU; cl01391" /db_xref="CDD:154376" gene complement(1330845..1333355) /locus_tag="Alide_1257" /db_xref="GeneID:10103292" CDS complement(1330845..1333355) /locus_tag="Alide_1257" /inference="protein motif:TFAM:TIGR01760" /note="KEGG: pna:Pnap_3313 TP901 family phage tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region" /codon_start=1 /transl_table=11 /product="phage tail tape measure protein, tp901 family" /protein_id="YP_004125906.1" /db_xref="GI:319761969" /db_xref="InterPro:IPR010090" /db_xref="GeneID:10103292" /translation="MAVDSMRLRVVLDLAERVVAPLQKINGASREAASALKATRDRLK ELNTQQRTLADFGKARAAMSQQKNSLQVLRQQLDAMRASGTASTKEVQAQEKTIARQT DAYERQRGTVFRLRTQLTAMGVNAAGQAQRRLASDIATANAAMAVQQKRLEELNRLED MRSKLAKRHSKEMMHLASVGGFGVAAIAAGRKATTPLRAAIGAFMPAESEESQLRASM MGADGSVSAEYQRITDLATRLGDKLPGTTADFIQMMTMLRRQGISAQAILGGLGEASA YLGVQLKMPVTAAAEFGAKMQDATQTAERDMMGLMDVIQRTYYLGVDSGNMLQGFTKL SPVLGVIGKKGLEGARELAPLLVMMDQTGMAGESAGNAIRKVYQAGLDAKKMAKGNAL LASAGISLDFTDGKGEFAGTAHLFAQLDKLQALTAVQRTGVIKAIFGDDAETLQVLNT MMAKGMAGYDEVVAKMQAQADLRRRVNEQLQTLGAVAEAAEGSFTNMLKDMGATIAPD LKRVLTALADLANATGAWVREHPELVKWAMRAVGVAALLVTAVGGLALAYAGVLAPVM LARFALGRLSLAILTTRAAATAAAGGMGLLYRVGFLLGRAWAFAAPVVAGFGQALMVL GRFLLVTPLGFALTLLATAGYLLYTRWAEVKGGAIALWQDMVALKDRFFTAGADLLNG LVNGITSRAVAVRDAVVGMADAVGGWFREKLGINSPSRVFMQYGGWIADGAAIGMQGG QGTVRNAALAIATAATAAGPGMAGAGPVRFDSRPPLSAASLAAAPAPMAAGSTYHITI NAAPGMDGQAVARAVAAELDRRERQKSARVRSQLSDID" misc_feature complement(<1332873..>1333289) /locus_tag="Alide_1257" /note="polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Region: pepcterm_ChnLen; TIGR03007" /db_xref="CDD:163099" misc_feature complement(1331751..1332779) /locus_tag="Alide_1257" /note="phage tail tape measure protein, TP901 family, core region; Region: tape_meas_TP901; TIGR01760" /db_xref="CDD:188165" gene complement(1333392..1333619) /locus_tag="Alide_1258" /db_xref="GeneID:10103293" CDS complement(1333392..1333619) /locus_tag="Alide_1258" /inference="similar to AA sequence:KEGG:Dsim_GD23071" /note="KEGG: dsi:Dsim_GD23071 GD23071 gene product from transcript GD23071-RA" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125907.1" /db_xref="GI:319761970" /db_xref="GeneID:10103293" /translation="MLSVILTAIAVALIGWAALWCLTALLMPVYLWVLYTDSRDRPQR EANLREAQKVIAEFEAEQQAHASASRPLRGI" sig_peptide complement(1333539..1333619) /locus_tag="Alide_1258" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.844) with cleavage site probability 0.597 at residue 27" gene complement(1333662..1333778) /locus_tag="Alide_1259" /db_xref="GeneID:10103294" CDS complement(1333662..1333778) /locus_tag="Alide_1259" /inference="protein motif:PFAM:PF06528" /note="PFAM: P2 GpE family protein; KEGG: dac:Daci_2623 P2 GpE family protein" /codon_start=1 /transl_table=11 /product="p2 gpe family protein" /protein_id="YP_004125908.1" /db_xref="GI:319761971" /db_xref="InterPro:IPR009493" /db_xref="GeneID:10103294" /translation="MADLALVFHWRPGDMEDMSVAELMQWRERARERYEKQD" misc_feature complement(1333665..1333778) /locus_tag="Alide_1259" /note="Phage P2 GpE; Region: Phage_P2_GpE; pfam06528" /db_xref="CDD:148250" gene complement(1333787..1334146) /locus_tag="Alide_1260" /db_xref="GeneID:10103295" CDS complement(1333787..1334146) /locus_tag="Alide_1260" /inference="protein motif:PFAM:PF06158" /note="PFAM: tail E family protein; KEGG: dac:Daci_2624 tail E family protein" /codon_start=1 /transl_table=11 /product="tail e family protein" /protein_id="YP_004125909.1" /db_xref="GI:319761972" /db_xref="InterPro:IPR009322" /db_xref="GeneID:10103295" /translation="MTEKTQPSTPAGQTDAAATAVQNADMREVILDVPLQRPGGELRK VLIRKPNAGALRGLSLIELLNMNTTALQTIIPRITEPMIHKPEVNQIDPADLVAIGTE VAGFLVPKAQREAFPSE" misc_feature complement(1333811..1334068) /locus_tag="Alide_1260" /note="Phage tail protein E; Region: Phage_E; pfam06158" /db_xref="CDD:148016" gene complement(1334182..1334691) /locus_tag="Alide_1261" /db_xref="GeneID:10103296" CDS complement(1334182..1334691) /locus_tag="Alide_1261" /inference="protein motif:TFAM:TIGR01611" /note="KEGG: dac:Daci_2625 phage major tail tube protein; TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein" /codon_start=1 /transl_table=11 /product="phage major tail tube protein" /protein_id="YP_004125910.1" /db_xref="GI:319761973" /db_xref="InterPro:IPR006498" /db_xref="GeneID:10103296" /translation="MGLPRSLKHFATFVDGVNYIGEMPEVGLPKLTRKMEDYRSGGMN APVKLDFGMEGMEAELTAAGYMKDLFESWGTLRHDGVLLRFAGSLQGDDSESWDALEV VMRGRFSEIDFGKAKAGDKTEIKFKGAISYYKLSINGQVLVEIDAVNFIEVVNGIDRL AQVRAALGI" misc_feature complement(1334185..1334685) /locus_tag="Alide_1261" /note="Phage tail tube protein FII; Region: Phage_tube; cl01390" /db_xref="CDD:174624" gene complement(1334717..1335913) /locus_tag="Alide_1262" /db_xref="GeneID:10103297" CDS complement(1334717..1335913) /locus_tag="Alide_1262" /inference="similar to AA sequence:KEGG:Daci_2626" /note="KEGG: dac:Daci_2626 tail sheath protein" /codon_start=1 /transl_table=11 /product="tail sheath protein" /protein_id="YP_004125911.1" /db_xref="GI:319761974" /db_xref="GeneID:10103297" /translation="MATIPYHHGIRVHEINEGINALKIISTAVIGMVVTASDADATAF PLNEPVLVTQIDAAIGKAGTEGTLAPALTAIRQQCRPVLVIVRVADGEGGTPEEKAAD QTAKVIGTTTAGGQYTGLQALLMAQARLRVKPRILGAPGLATQAVADELASVAAKLRG FAYVAAQGENVSEAIDYKDSFGHRELMLIWPGWKTFDVATATVGDVSAEAYALGLRAK IDQEQGWHKTLSNVPVSGVMGISRDVYWDLQSPDTDAGLLNAANITTLIQSNGYRFWG SRTCATDELFRFESAVRTAQVLADTMAEGHMWAVDKPLHPSLVKDMLEGINAKFRELK TAGYILDGNAWYDEEVNTTATLKSGKLTLDYDYTPVPPLEDLNFRQRITDRYFADFAL RVGTGQ" misc_feature complement(1334732..1335898) /locus_tag="Alide_1262" /note="Phage tail sheath protein; Region: Phage_sheath_1; cl01389" /db_xref="CDD:194121" gene complement(1335929..1336171) /locus_tag="Alide_1263" /db_xref="GeneID:10103298" CDS complement(1335929..1336171) /locus_tag="Alide_1263" /inference="similar to AA sequence:KEGG:HSM_0915" /note="KEGG: hsm:HSM_0915 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125912.1" /db_xref="GI:319761975" /db_xref="GeneID:10103298" /translation="MKRWLINLLIAADQLLNALLRGQPDETLSSRAHRMRVKGHRWWG WTAAAIDLFFFFDPHHCERAHLSELRRMQLPPSLRT" gene complement(1336218..1336871) /locus_tag="Alide_1264" /db_xref="GeneID:10103299" CDS complement(1336218..1336871) /locus_tag="Alide_1264" /inference="similar to AA sequence:KEGG:amb0391" /note="KEGG: mag:amb0391 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125913.1" /db_xref="GI:319761976" /db_xref="GeneID:10103299" /translation="MQTKLIIMDGAVVGTTTPDDPNGYMLVPAPEGFDGDLSAVVFDA QAGVARLSLAGVQAQRVAAIKQEAAALIAATDWRLQRAREREQAGWMHVADVAAVLAE REAIRRSSNAAEAAVLQLTDPAAVQAFTWAPTDVAVLAPRLLTHEQLIQRFTDAEWQT MTEAARGNAAMDAWMRRFTLASVINLDDPATQAGVQALEIAGILAPGRAAEILGEHA" gene complement(1336880..1337800) /locus_tag="Alide_1265" /db_xref="GeneID:10103300" CDS complement(1336880..1337800) /locus_tag="Alide_1265" /inference="similar to AA sequence:KEGG:SPH_1885" /note="KEGG: spv:SPH_1885 cell wall surface anchor family protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125914.1" /db_xref="GI:319761977" /db_xref="GeneID:10103300" /translation="MSEALIAPTYAEAAQMHRHFRLLFGNAAALEYLLASTPAPTGAQ LQAWLATAANRGAFEQLASSAAGAAALCANGAVMAAVADSDKALQCLLASAPAVQAVM ASSTAMAAMAGKTTAMQALVQSTDARRALVASRAALSVVAEVPEAVSVVAEHAPTMSQ VVADLDGVRTLAASASAMAAISASSKAMSIVMGSANARSAMYDSTAAWNAMVASPQAR AAMDAVAVEHSQNSTSHGFPTGVAAGVRAALIAQRGSTNGVTSYAGASADTYAAVGNT WVERYVRVTGLTHRVGASGVNSIIRYVVMQ" gene complement(1337801..1338439) /locus_tag="Alide_1266" /db_xref="GeneID:10103301" CDS complement(1337801..1338439) /locus_tag="Alide_1266" /inference="similar to AA sequence:KEGG:MCA2902" /note="KEGG: mca:MCA2902 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125915.1" /db_xref="GI:319761978" /db_xref="GeneID:10103301" /translation="MPTRFEAYRMRDGVTPLSEDFFNAVFGDIDTRIAELEARRADWQ GVVDELTAFGLQRIDTLVGPSMAEVNAMLAQLRQRRDELEAAIGNVGDLATQTQLGAA IDGEQEARTAAIAAEAAARQAAIVGEQSARAVAIALATAKPSAATYTYNGAGRVTGAR EELPAGERITTLTYDTAGRVATVAEAQSGRTRTTTYGYDAAGRVAGYEVAEA" gene complement(1338456..1340702) /locus_tag="Alide_1267" /db_xref="GeneID:10103302" CDS complement(1338456..1340702) /locus_tag="Alide_1267" /inference="similar to AA sequence:KEGG:MCA2904" /note="KEGG: mca:MCA2904 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125916.1" /db_xref="GI:319761979" /db_xref="GeneID:10103302" /translation="MEKQVIYRDRQELQAADLNNTQLWGDEARRHIVADAITPERQFV GLAVSGRSATELEVAPGRLYDGSSGKVYALDAAQVHSVFAMLPLQDRKWLAVSVFGQE EDTDIQPRDFLIDLQTREVEPEAVAMQRRRVATVHIAQGLESPTPERPEPPTGYTLIA HVRLSPTGVQEVVLADLRRLPNLQRVDARLRTAEGWILAAEPRIAHIMSDIAGLASDL ATRASLEHVAQLGVDMAKVKERLEIPDDYVFYGADHFLDESESDPAHAGYSADPWEGI RPPIAAQQTGALSLLNPMDPEARTSAGGLMLPAYEEVTRLRMEARAGELAINQYQYQT FNVEQKTMSRERVRTGETLTYCTNAAFWKSGVYDPITGILRRGDETWQVDAQDMARAT IDHQFVRVTRVWIDRWEEPYWDIVTTEHVVQGAVLAQTVLMAQTGWLTSAEFFVTSAD PAGGLTVLVTEAALGQPDMEKVLARATLAPGAVTAGWLKVTLPDPLMVEAGKRYAVVL ATGAGHRVGFTEGTEYTQGILMYAQDGAYFTNAAERDLMLRLNFARFISPRAVVQMQP LQLAGGVQELDMLYDAAVPAGCRLVWEYQTGGLWRPVTPDNPPQFGGAALVPLRAVCI GTQDLMPAVRPATAQVTVRRRATAFVHVSTERTLAQPSKNIRVRLLLEDFGTDAAHTV GCSLIVAGATVPATTHRDEIVDGRSLWREFRFDLAATTLAYRIRTEGAGVTGAHPWHV AERYDLAL" gene complement(1340708..1341919) /locus_tag="Alide_1268" /db_xref="GeneID:10103303" CDS complement(1340708..1341919) /locus_tag="Alide_1268" /inference="similar to AA sequence:KEGG:MCA2905" /note="KEGG: mca:MCA2905 prophage MuMc02 tail fiber domain-containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125917.1" /db_xref="GI:319761980" /db_xref="GeneID:10103303" /translation="MTERHHLLPPNASALERATSSAIGPWTTGDEAIATLHNPYRIPA ALLPHMAIAEDVPVWPAGEAERRAVIAASPRLHALIGTPRGLRELARLAGARIERLEM PPAKTFLGYWDAASRAQWLAAHPELRLYTQRERAACEGLMLGHGYTAARGEPPARTSA MARSAVRAEVHHPGGQVQQLTTHGWSDLTRDGTATVDLARRATARGQHLGLPLAGATG RADAAARYWRVQAVQYREREHLLTLKQVAPSLAPLSPDAEPVAERAQRQHVLCAGLPL AGFTARSDSARRMYARIRLHDTAVANRPKHGPSYLGFTRLSSPPFVALAHVRMPERRV PFAMAGTAMRAALSAGDARERMAPTLDAMDWARAAHDKVLVRTRLHATARASRIYRAG AVLAGQTINRS" misc_feature complement(<1341617..1341898) /locus_tag="Alide_1268" /note="Phage tail protein (Tail_P2_I); Region: Tail_P2_I; cl01817" /db_xref="CDD:163999" gene complement(1341912..1342850) /locus_tag="Alide_1269" /db_xref="GeneID:10103304" CDS complement(1341912..1342850) /locus_tag="Alide_1269" /inference="protein motif:PFAM:PF04865" /note="PFAM: Baseplate J family protein; KEGG: dac:Daci_2635 baseplate J family protein" /codon_start=1 /transl_table=11 /product="baseplate j family protein" /protein_id="YP_004125918.1" /db_xref="GI:319761981" /db_xref="InterPro:IPR006949" /db_xref="InterPro:IPR014507" /db_xref="GeneID:10103304" /translation="MSLDLKSLPAPAVVETLDYEAILDGLRADLLTRYPTAAEVLDLE SEPLLKLMEVAAYRELLIRARINDAARAVMLPWAVSADIDSLASRYDVERLPGEDDER LRARVLIGYHALSAAGSTHSWRLRALSQSVDVRQVDVWADRPGRVKVCLLARVAVPAA TLDDEAQALGRALFGEHPAAQSGSMRWRVASAGDAIVGKVETALLAEDVRPLTVDVDV TAARVLPVAVSATLVHPPGPDGALLAAQAAARVRRLAAATAFRVDVTRAALIAALMGD GIRDVHLHAPAADVAAGPGEVPAITAITVTAEARHD" misc_feature complement(1341933..1342841) /locus_tag="Alide_1269" /note="Baseplate J-like protein; Region: Baseplate_J; cl01294" /db_xref="CDD:174609" gene complement(1342847..1343197) /locus_tag="Alide_1270" /db_xref="GeneID:10103305" CDS complement(1342847..1343197) /locus_tag="Alide_1270" /inference="protein motif:PFAM:PF04965" /note="PFAM: GPW/gp25 family protein; KEGG: dac:Daci_2636 gpW/GP25 family protein" /codon_start=1 /transl_table=11 /product="gpw/gp25 family protein" /protein_id="YP_004125919.1" /db_xref="GI:319761982" /db_xref="InterPro:IPR007048" /db_xref="GeneID:10103305" /translation="MNRHTGRALGDLEHLRQSIADILTTPIGSRIMRRDYGSLVPQLI DQPDNEATHIRLYAAIASALMKWEPRLRLASIRFDRTVDHPGRVEVTLTGTRTDARRA PLTLLIQLAGGAAA" misc_feature complement(1342880..1343197) /locus_tag="Alide_1270" /note="Gene 25-like lysozyme; Region: GPW_gp25; cl01403" /db_xref="CDD:194124" gene complement(1343194..1343790) /locus_tag="Alide_1271" /db_xref="GeneID:10103306" CDS complement(1343194..1343790) /locus_tag="Alide_1271" /inference="protein motif:TFAM:TIGR01644" /note="TIGRFAM: phage baseplate assembly protein V; KEGG: dac:Daci_2637 phage baseplate assembly protein V" /codon_start=1 /transl_table=11 /product="phage baseplate assembly protein v" /protein_id="YP_004125920.1" /db_xref="GI:319761983" /db_xref="InterPro:IPR013046" /db_xref="GeneID:10103306" /translation="METPIAQPESPYEILRRLENIVRVGTIADVRHSAPARCRVRTGN LTTAWVPWLAQRAGGQHGHHWWPPVVGEQCLLLAPGGDLLNAVALPGLYSNAKPQGSA DARVFRMDWNEADSMVHDAEMSELTIDCYGAITLKVQDSIVQISAKSIRLAAGGGELI VDENGVTAKPDVTAQGISLVKHVHTEVRRGGELSGEPA" misc_feature complement(1343206..1343745) /locus_tag="Alide_1271" /note="Phage-related baseplate assembly protein; Region: Phage_base_V; cl11432" /db_xref="CDD:164221" gene complement(1343867..1344343) /locus_tag="Alide_1272" /db_xref="GeneID:10103307" CDS complement(1343867..1344343) /locus_tag="Alide_1272" /inference="protein motif:TFAM:TIGR01635" /note="TIGRFAM: phage virion morphogenesis protein; KEGG: csa:Csal_1389 phage virion morphogenesis (tail completion) protein" /codon_start=1 /transl_table=11 /product="phage virion morphogenesis protein" /protein_id="YP_004125921.1" /db_xref="GI:319761984" /db_xref="InterPro:IPR006522" /db_xref="GeneID:10103307" /translation="MRRSESVDDIDSLQTWLAPLLEKLSDKQRMRLAREVARDLRAAN TANMRAQRGPDGQAWEPRKQPLRAQRGQVRKSAQTMFQKLRTAKHLKAGAQGGDAVVQ FLGRTERIARVHHLGLRDQVKPGGPQYDYPARPLLGFPDGFEERLKDRILAHLAGR" misc_feature complement(1343876..1344322) /locus_tag="Alide_1272" /note="Phage virion morphogenesis family; Region: Phage_tail_S; cl02089" /db_xref="CDD:154737" gene complement(1344318..1344464) /locus_tag="Alide_1273" /db_xref="GeneID:10103308" CDS complement(1344318..1344464) /locus_tag="Alide_1273" /inference="similar to AA sequence:KEGG:100251070" /note="KEGG: vvi:100251070 hypothetical protein LOC100251070" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125922.1" /db_xref="GI:319761985" /db_xref="GeneID:10103308" /translation="MGLRAALSKYLFTAFFICWELGKRLRGKWRRSRLREWWRAHAPE RKRG" gene complement(1344443..1344934) /locus_tag="Alide_1274" /db_xref="GeneID:10103309" CDS complement(1344443..1344934) /locus_tag="Alide_1274" /inference="similar to AA sequence:KEGG:Daci_2638" /note="KEGG: dac:Daci_2638 P2 phage tail completion R family protein" /codon_start=1 /transl_table=11 /product="p2 phage tail completion r family protein" /protein_id="YP_004125923.1" /db_xref="GI:319761986" /db_xref="GeneID:10103309" /translation="MLKPASLRDALTAALPELERDPERLVMVIETGNILNTGTAALSW EYRYTLAITVLDWAGHADAIIAPLLLWAKHNQPELFDNPERRERALRFKVDFLSTTTV DLRLEIDLSEAVLARPRAGTPGALNLIHKPEPPSPLAILQREHWEFFIRDEKVAIWDY EPR" misc_feature complement(1344533..1344934) /locus_tag="Alide_1274" /note="P2 phage tail completion protein R (GpR); Region: P2_Phage_GpR; pfam06891" /db_xref="CDD:148486" gene complement(1344918..1345466) /locus_tag="Alide_1275" /db_xref="GeneID:10103310" CDS complement(1344918..1345466) /locus_tag="Alide_1275" /inference="protein motif:PFAM:PF10721" /note="PFAM: Protein of unknown function DUF2514; KEGG: dac:Daci_2639 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125924.1" /db_xref="GI:319761987" /db_xref="InterPro:IPR019659" /db_xref="GeneID:10103310" /translation="MILDKLKTYAWQLAALALAVLLLLQTHRLTNAAKAEAKAAIALA THTAEVERELRELTDRYRTLEGNYRNDLLTIADTYASETRRFLDDADRANAARDSMRR DLAAYIESHRAAALNRAAAGQCTPDTAALDLLADLQRRADDRAGELALIADDARTRGA ECASRYDSARALIEEARRAQTR" sig_peptide complement(1345368..1345466) /locus_tag="Alide_1275" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.858) with cleavage site probability 0.478 at residue 33" gene complement(1345513..1345692) /locus_tag="Alide_1276" /db_xref="GeneID:10103311" CDS complement(1345513..1345692) /locus_tag="Alide_1276" /inference="similar to AA sequence:KEGG:Rleg2_1424" /note="KEGG: rlt:Rleg2_1424 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125925.1" /db_xref="GI:319761988" /db_xref="GeneID:10103311" /translation="MNRIMSRKFILAIATVASASWLVYAGHIADGVYSAVVIAAVSGY MAANVAQKATVKETP" sig_peptide complement(1345615..1345692) /locus_tag="Alide_1276" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.917 at residue 26" gene complement(1345689..1346216) /locus_tag="Alide_1277" /db_xref="GeneID:10103312" CDS complement(1345689..1346216) /locus_tag="Alide_1277" /inference="protein motif:PFAM:PF00959" /note="PFAM: glycoside hydrolase family 24; KEGG: eba:ebA7232 phage-related lysozyme" /codon_start=1 /transl_table=11 /product="glycoside hydrolase family 24" /protein_id="YP_004125926.1" /db_xref="GI:319761989" /db_xref="GO:0003796" /db_xref="InterPro:IPR002196" /db_xref="GeneID:10103312" /translation="MQMKEAAVRVAVAALTLSASGLIGIAVSEGWEPVARPPVPGDVP TGGFGSTRSESGPMKAGERIDPVRGLILLQRDAGEAERIVQRCAPVPMHQHEFDAFVS LAYNVGSGKAGVKDGFCELKRGGPSTIVRRLLAGDYAGACDAILAWDRFQGKPLRGLT LRRERERTLCLGGVA" misc_feature complement(1345752..1346168) /locus_tag="Alide_1277" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" misc_feature complement(1346130..1346132) /locus_tag="Alide_1277" /note="catalytic residue [active]" /db_xref="CDD:29558" gene complement(1346207..1346443) /locus_tag="Alide_1278" /db_xref="GeneID:10103313" CDS complement(1346207..1346443) /locus_tag="Alide_1278" /inference="similar to AA sequence:KEGG:Daci_2641" /note="KEGG: dac:Daci_2641 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125927.1" /db_xref="GI:319761990" /db_xref="GeneID:10103313" /translation="MDKENIIRTAATEAAKAAPPVAVVVDAAANSWTMTHTATALTIA YVLLQSAYLIWRWRTDRLDRIARLARESEGTVCK" gene complement(1346450..1346653) /locus_tag="Alide_1279" /db_xref="GeneID:10103314" CDS complement(1346450..1346653) /locus_tag="Alide_1279" /inference="protein motif:PFAM:PF05489" /note="PFAM: tail X family protein; KEGG: dac:Daci_2642 tail X family protein" /codon_start=1 /transl_table=11 /product="tail x family protein" /protein_id="YP_004125928.1" /db_xref="GI:319761991" /db_xref="InterPro:IPR008861" /db_xref="GeneID:10103314" /translation="MQAIARDHETLDELCMRHLGTTRGVVEATLDKNPGLAGKGPRLP IGQVVELVEPAAAPVRPTINLWD" misc_feature complement(<1346516..1346653) /locus_tag="Alide_1279" /note="Phage Tail Protein X; Region: Phage_tail_X; cl02088" /db_xref="CDD:154736" gene complement(1346653..1347135) /locus_tag="Alide_1280" /db_xref="GeneID:10103315" CDS complement(1346653..1347135) /locus_tag="Alide_1280" /inference="protein motif:PFAM:PF05926" /note="PFAM: head completion protein; KEGG: bps:BPSL0168 phage head completion/stabilization protein" /codon_start=1 /transl_table=11 /product="head completion protein" /protein_id="YP_004125929.1" /db_xref="GI:319761992" /db_xref="InterPro:IPR009225" /db_xref="GeneID:10103315" /translation="MSFIATANPPAASTEPAVANDGFFPAIDCEQLRKDIRLDGTVTP ARLQLAVMDAMWAVNAELREWRAAHVQAGRGTLGEVPAESIGGESVKVRQYRQAIYAH VQAQLAEAYRDMDTTPQGAGKEARVLSALEIRTDGFNQRLRWAIADLKDTSRVIAELM " misc_feature complement(1346659..1347087) /locus_tag="Alide_1280" /note="Phage head completion protein (GPL); Region: Phage_GPL; pfam05926" /db_xref="CDD:147853" gene complement(1347262..1347966) /locus_tag="Alide_1281" /db_xref="GeneID:10103316" CDS complement(1347262..1347966) /locus_tag="Alide_1281" /inference="protein motif:PFAM:PF05944" /note="PFAM: small terminase subunit; KEGG: pna:Pnap_3292 phage small terminase subunit" /codon_start=1 /transl_table=11 /product="small terminase subunit" /protein_id="YP_004125930.1" /db_xref="GI:319761993" /db_xref="GO:0003677" /db_xref="GO:0004519" /db_xref="InterPro:IPR010270" /db_xref="GeneID:10103316" /translation="MRQTPAQRHRMHRLALQQAELAHAANAHGQTTGTAYELQLAQLH QHRLRLKDLQSVEKKVEAKRVLLPEYDAYIDGVLQARPGTQDDVLATVLVWHIDAGNY ARALQLADYALASGMSPPDRYNRDLPTIVQDEVAEAILGGKLQGADAVQVAAQAMALT EHADTPDQAKAKLYKAAGWAVLGKTGGHDVDMKTRTLKACKEALPLLQRALQLDSRTG VKKDIERLERRLAKLD" misc_feature complement(1347268..1347957) /locus_tag="Alide_1281" /note="Phage small terminase subunit; Region: Phage_term_smal; cl05485" /db_xref="CDD:174843" gene complement(1348065..1349069) /locus_tag="Alide_1282" /db_xref="GeneID:10103317" CDS complement(1348065..1349069) /locus_tag="Alide_1282" /inference="protein motif:TFAM:TIGR01551" /note="KEGG: csa:Csal_1397 phage major capsid protein, P2; TIGRFAM: phage major capsid protein, P2 family; PFAM: major capsid protein P2" /codon_start=1 /transl_table=11 /product="phage major capsid protein, p2 family" /protein_id="YP_004125931.1" /db_xref="GI:319761994" /db_xref="InterPro:IPR006441" /db_xref="GeneID:10103317" /translation="MKNATRLLFNQYLSDQAALNGVPSVAQKFAVAPTIQQKLESRIQ ESSAFLQSINIVPVDEMQGEKLGLGASGPIASRTNTNQKDRSTKDVSSLEGQGYKCEK TDYDTHIGYNKLDMWAKFPDFQLRLARAIQRQCALDRIMIGFNGTSVAVESDLNNNPL LQDVNKGWLQYLRDNAAARVMDEGATQGKVVVGAAGDYKTLDGLVYDASQSLLDAWHA NAGDLVAIVGRDLMHDKLFPLVNEKQAPTETLAADIVRSQMRLGTLQAITVPFMKPNA VLITSLDNLSIYYQAGARRRTVMDNPKRDRIETYESSNDAFVVEDLGKACLVENIEMA " misc_feature complement(1348068..1349069) /locus_tag="Alide_1282" /note="Phage major capsid protein, P2 family; Region: Phage_cap_P2; cl04947" /db_xref="CDD:174828" gene complement(1349129..1349959) /locus_tag="Alide_1283" /db_xref="GeneID:10103318" CDS complement(1349129..1349959) /locus_tag="Alide_1283" /inference="protein motif:PFAM:PF05929" /note="PFAM: capsid scaffolding; KEGG: pfs:PFLU1589 capsid scafolding protein" /codon_start=1 /transl_table=11 /product="capsid scaffolding" /protein_id="YP_004125932.1" /db_xref="GI:319761995" /db_xref="InterPro:IPR009228" /db_xref="GeneID:10103318" /translation="MPSKFFRVATEGATTDGREIQRSWIEQMAKNFNREKYGARVWLE HYRGVLPESSFAALGDVIAVQARQVEDGKLALFAQIEALPALVAMNKAKQKIYTSIEV DPNFAKTGEAYLTGLAVTDSPASLGTEVLKFAAGNPDANPFKGKKHSEGALFTAAVET DLGLEGDAEGLAGQLLAKFSTMLESLGAIVTAKPTQAQADTFATKTMEVLGAADAAIK HQAKELAAAQEAHAKMAGEFSTLQTEFKTLTEKLSKQDGSTTHRPEATGTEGTLKADC " misc_feature complement(1349159..1349953) /locus_tag="Alide_1283" /note="Phage capsid scaffolding protein (GPO) serine peptidase; Region: Phage_GPO; pfam05929" /db_xref="CDD:114640" gene 1350104..1352005 /locus_tag="Alide_1284" /db_xref="GeneID:10103319" CDS 1350104..1352005 /locus_tag="Alide_1284" /inference="similar to AA sequence:KEGG:Pnap_3289" /note="KEGG: pna:Pnap_3289 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125933.1" /db_xref="GI:319761996" /db_xref="GeneID:10103319" /translation="MTAKAAKKPAACAKPKRAVSAVRNTGSAAQKAITKPARSLALDA LPAGETRPVDGGAGVRREARALFWMGWKLSHIAEHLNIPRGTLHGWHKAEKWADTPAV QRVECSLESRLVTLIAKDVKTGGDYKEIDLLGRQLERLARIGKYERTGREADLNPAIE ARNAGPKKRRAKNFLSDEQIEQLKSAFLDSLFKYQLGWWQSSQQRTRAILKSRQIGAT WYFAREALIDALETGRNQIFLSASKAQAHLFKQYIVAFVHEVTGVELKGDPIVLANGA TLYFLGSNARTAQGYHGNFYFDEFFWTQDFELLNKVASGMAMHKKWRKTYFSTPSSIQ HAAYAFWSGLRLKRKSKIEVDISHDRLSGGFTGEDRVWRNIVTILDALAGGCDLFDLD ELRLEYSDAEFANLLMCGFVDDSFSVFPLSMLQACMVDSWELWADFKPFSQRPFGWMP VWVGYDPSHTGDSAGLVVLAPPAKPGGQLRVLHTQQFKGMDFEAQAKAIKEITQRYNV AAMTLDTTGIGQGVFQLVQKFYPAARGINYSVETKTMLVLKAQQVINAGRLEFDAGNK ELASSFMAIKRELTASGRSVTYAAGRSEETGHSDLAWACMNAISNEPLEVGTGLATVQ GQSFLEISE" misc_feature 1350278..1351960 /locus_tag="Alide_1284" /note="terminase ATPase subunit; Provisional; Region: P; PHA02535" /db_xref="CDD:164931" misc_feature 1350278..1350448 /locus_tag="Alide_1284" /note="Putative ATPase subunit of terminase (gpP-like); Region: Terminase_5; pfam06056" /db_xref="CDD:114760" misc_feature 1350674..>1351057 /locus_tag="Alide_1284" /note="Mu-like prophage FluMu protein gp28 [General function prediction only]; Region: COG4373" /db_xref="CDD:34082" gene 1352008..1353099 /locus_tag="Alide_1285" /db_xref="GeneID:10103320" CDS 1352008..1353099 /locus_tag="Alide_1285" /inference="protein motif:TFAM:TIGR01540" /note="KEGG: hse:Hsero_0910 bacteriophage capsid portal protein; TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein" /codon_start=1 /transl_table=11 /product="phage portal protein, pbsx family" /protein_id="YP_004125934.1" /db_xref="GI:319761997" /db_xref="InterPro:IPR006430" /db_xref="InterPro:IPR006944" /db_xref="GeneID:10103320" /translation="MTKRTRRTSAQARHHAAQATAPAPSAAPTVSTDTAQNVQSFTFD LGEPEPVIGGRSALLEYAECLQSGDWYEPPVSLAALARLLRVGAHHESALRFKINVLA STFMPSHWLSAATFRALALDFMVLGNGYLERRRNVLGNLLELRHALGKYVRRGVEPGR YFFVTDMQSPHEFPRHDVFHLREQDIHQEVYGLPPYLGALQSALLNESATLFRRRYYN NGSHAGFILYVTDAAQSQGDIDKMREQLTKTKGMGNFRNLFYYSPGGKKEGIQLIPIS EVAAKDDFLNIKNASRDDVLAVHRVPPQLMGMLPNNVGGFGDVEKAAKVFARNEIAPL QSTMAHAINTWAGVPACAFKPYVLEDAPA" misc_feature 1352095..1353096 /locus_tag="Alide_1285" /note="Phage-related protein [Function unknown]; Region: COG4695; cl01923" /db_xref="CDD:194210" misc_feature 1352215..1353039 /locus_tag="Alide_1285" /note="phage portal protein, PBSX family; Region: portal_PBSX; TIGR01540" /db_xref="CDD:162410" gene complement(1353566..1353641) /locus_tag="Alide_R0013" /note="tRNA-Lys2" /db_xref="GeneID:10103321" tRNA complement(1353566..1353641) /locus_tag="Alide_R0013" /product="tRNA-Lys" /db_xref="GeneID:10103321" gene complement(1353726..1354703) /locus_tag="Alide_1286" /db_xref="GeneID:10103322" CDS complement(1353726..1354703) /locus_tag="Alide_1286" /inference="protein motif:TFAM:TIGR01306" /note="KEGG: aav:Aave_1911 guanosine 5'-monophosphate oxidoreductase; TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase" /codon_start=1 /transl_table=11 /product="guanosine monophosphate reductase" /protein_id="YP_004125935.1" /db_xref="GI:319761998" /db_xref="GO:0003920" /db_xref="InterPro:IPR001093" /db_xref="InterPro:IPR005994" /db_xref="InterPro:IPR015875" /db_xref="GeneID:10103322" /translation="MEIFDYDNILLLPRKCRVQSRSECDAGVELGGRRFRLPVVPANM KTVVDEKICAWLATSGYFYVMHRFDLDNLQFVREMRAQGCFASISLGIKQADYDTVDR LKAEGLTPEYITIDIAHGHSDSVRDMIAYLKQHLPQSFVIAGNVATPEAVIDLENWGA DATKVGVGPGKVCITKLKTGFGTGGWQLSALKWCARVATKPIIADGGIRSHGDIAKSV RFGATMVMIGSLFAGHEESPGKTVEVDGELYKEYYGSASDFNKGEYKHVEGKRILEPI KGRLADTLVEMEQDIQSSISYAGGRKLMDIRKVNYVILGGDNAGEHLLM" misc_feature complement(1353732..1354703) /locus_tag="Alide_1286" /note="guanosine 5'-monophosphate oxidoreductase; Provisional; Region: PRK05458" /db_xref="CDD:180097" misc_feature complement(1353762..1354694) /locus_tag="Alide_1286" /note="IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the...; Region: IMPDH; cd00381" /db_xref="CDD:73364" misc_feature complement(order(1353897..1353902,1353936..1353944, 1353948..1353950,1354017..1354022,1354083..1354085, 1354089..1354091,1354185..1354193,1354578..1354580)) /locus_tag="Alide_1286" /note="active site" /db_xref="CDD:73364" gene 1354937..1357327 /locus_tag="Alide_1287" /db_xref="GeneID:10103323" CDS 1354937..1357327 /locus_tag="Alide_1287" /inference="protein motif:PFAM:PF00580" /note="PFAM: UvrD/REP helicase; KEGG: dia:Dtpsy_2677 UvrD/REP helicase" /codon_start=1 /transl_table=11 /product="uvrd/rep helicase" /protein_id="YP_004125936.1" /db_xref="GI:319761999" /db_xref="GO:0003677" /db_xref="GO:0004003" /db_xref="GO:0005524" /db_xref="InterPro:IPR000212" /db_xref="InterPro:IPR014016" /db_xref="InterPro:IPR014017" /db_xref="GeneID:10103323" /translation="MHSPESFPPAPAALLQGLNPEQLAAVTLPAGHALILAGAGSGKT RVLTTRIAWLLSTGHATPGGILAVTFTNKAAKEMLTRLSAMLPINVRGMWIGTFHGLC NRMLRAHHKLAGLPQSFQILDTQDQLSAVKRLCKQFNVDEERFPPKQLAYFIAGCKEE GLRPRDVEAHDSDTRKKVELYQLYEEQCQREGVVDFGELMLRSFELLRDNDPVRVHYQ RRFRHILVDEFQDTNRLQYAWLKQLAGDVVDGRLVTQGSVIAVGDDDQSIYAFRGARV GNMQDFVREFDVRHQIKLEQNYRSYSNILDSANALIAHNSRRLGKNLRTTQGPGEPVR VYEAPTDLAEAQWIVDEIRQLVREGPMPRSEIAVLYRSNAQSRVIESALFNASVPYRV YGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVVNFPPRGIGARTLEQLQDAARGSG CSLHDAVSSVPGKAGVNLGAFVAMVDVMREQTQGRNLRAIIGQVLESSGLLEHYRNEK EGADRLENLDELISAAESFVTQEGFGRDAVALPLDETGAALTQSPASQGLDPNRPLLQ QPLVDTDTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGG MEEGLFPHENAMSDQGGLEEERRLMYVAITRARKRLYLSHAQTRLLHGQTRYNVRSRF FDELPEEALKWLTPRQQGFGSYAPDSRAASAYGAGARAGFGFNAAAFASPPVPPRKEE PAHGLRVGLAVFHTKFGEGKVLAIEGQGDDARAQVHFPRHGTKWLALSVAKLTVVE" misc_feature 1354967..1357321 /locus_tag="Alide_1287" /note="DNA-dependent helicase II; Provisional; Region: uvrD; PRK11773" /db_xref="CDD:183307" misc_feature 1354988..1356436 /locus_tag="Alide_1287" /note="UvrD/REP helicase; Region: UvrD-helicase; cl14126" /db_xref="CDD:196784" gene complement(1357349..1359298) /locus_tag="Alide_1288" /db_xref="GeneID:10103324" CDS complement(1357349..1359298) /locus_tag="Alide_1288" /inference="protein motif:PFAM:PF05787" /note="PFAM: protein of unknown function DUF839; KEGG: aav:Aave_1926 exported alkaline phosphatase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125937.1" /db_xref="GI:319762000" /db_xref="InterPro:IPR008557" /db_xref="GeneID:10103324" /translation="MPHTPTPSRRKTLQMLAGLPLLPLGAGASATGLLAACGGGSDST AAFKSASFTGMAAPTLANPAAMATTTVGSALKATFDDGSTQSFALAYHPFFITGDMVS NGKGGKLLAGGYYDIRNQPIIDATVAGGERQFFSDAPDGSSLLTVPNAKVDGVKGKPV FAVVQFEYTTWAQDGKTDMYGKLPSPIAVLTLDQDQATGKLSLVKYHNVDTSKVYGLW ITCGASLSPWGTHLSSEEYEPDAFTIGSNAMFKAYSQNLYGDAARANPYHYGHMPEVT VNPDGSASIKKHFCMGRISHELVQVMPDQRTALMGDDATNSAYFVFVADREKDLSSGT LYAARVGAGFSIDPASGSAAPLTWIRLGSATSAEIEQLANTLKPADIMSVQAKDPGDA SYTRIVANGKAEWIKINPGMDKAAAFLETHRYAAYKGASMGFTKMEGTTVNARDKVAY SALQNCEKSMVAGDAANVPGNGISIPRQLKAGVIMALSLRGGQKDTDGKAINSEWMPV DTKALLAGEDIAADALGNTANPDRIANPDNLKFSEKLRTLFIGEDSSQHVNNFLWAYN VDTRQLSRIMSIPAGGESTGLHAVDEINGWTYIMSNFQHAGDWGGIHGVVKDQLDPLI RANYRGKAGAAVGYLTGTPSQPRLG" misc_feature complement(1357433..>1358713) /locus_tag="Alide_1288" /note="Predicted phosphatase [General function prediction only]; Region: PhoX; COG3211" /db_xref="CDD:33024" gene 1359566..1361182 /locus_tag="Alide_1289" /db_xref="GeneID:10103325" CDS 1359566..1361182 /locus_tag="Alide_1289" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: dba:Dbac_1471 diguanylate cyclase; SMART: GGDEF domain containing protein; extracellular solute-binding protein family 3" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004125938.1" /db_xref="GI:319762001" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10103325" /translation="MAGEPLMGEKRWSGHALWRHIGSRGLGHLWRALCVALCAWCIAP LAQAAACEGGQHVRLTRPVEFSAEDLAYFRAMAPLRVLSADAPPMSRYDEQRRTYTGI SVDVWCFIAERLGLRYELIPGRDQTVAQKILQVQEGAADVFIPLSLQSERAQRGLFTL PYYESYYAVIARKGWRLPIRDIVDLAQYRVGVVRGVALEPTLKEIVPPHQLFSFDETS SAGLFLALRDGSIDVAVFNKSIFAEKRYLHEYFDLEDVLTLYGNPRAYRFYFSPTPQH ERVVAAFDRYLAAMDVTESIAVHEEGERQFIERYVAQRGQRIFLQVASVSAVVLALVL YLSLRRYRRLVRLLERSNSQIRRQQQALQAANQELERQSQTDGLTGLANRREFDHALR REQARQQRTGAPLSLLMVDVDHFKCVNDHYGHAMGDDYLRAIARVLKAAVGRPTDLVA RYGGEEFVCLLPDTAAEDALKVAERIRQGVAELGLPNALAAIPRLTLSIGIATASGTS AALQQLLAQADTQLYAAKHAGRDRIHAVVL" misc_feature 1359800..1360435 /locus_tag="Alide_1289" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature 1359800..1360435 /locus_tag="Alide_1289" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature order(1359824..1359826,1359947..1359949,1360019..1360021, 1360154..1360156,1360274..1360276) /locus_tag="Alide_1289" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1360223..1360225,1360235..1360237,1360253..1360255) /locus_tag="Alide_1289" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 1360355..1360372 /locus_tag="Alide_1289" /note="hinge residues; other site" /db_xref="CDD:29040" misc_feature 1360685..1361167 /locus_tag="Alide_1289" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1360796..1360798,1360928..1360930) /locus_tag="Alide_1289" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1360811..1360813,1360820..1360825,1360835..1360837, 1360847..1360849,1360916..1360918,1360922..1360933) /locus_tag="Alide_1289" /note="active site" /db_xref="CDD:143635" misc_feature order(1360904..1360906,1360988..1360990) /locus_tag="Alide_1289" /note="I-site; other site" /db_xref="CDD:143635" gene complement(1361195..1362016) /locus_tag="Alide_1290" /db_xref="GeneID:10103326" CDS complement(1361195..1362016) /locus_tag="Alide_1290" /inference="similar to AA sequence:KEGG:Ajs_3321" /note="KEGG: ajs:Ajs_3321 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125939.1" /db_xref="GI:319762002" /db_xref="GeneID:10103326" /translation="MKLHIVPARTGLEWVRQGITVFWRQPMALAALFFMTMAAMSLAT MLPLVGPAVALSLLPSATLAMMVAAAEASQGRTPTPALLLVAFRTGRQRLQAMMTLGA FYALGFLAVMALSALIDGGQFARVYLGGEPLTREVAEAGDFQAAMWLSLLLYVPLSLL FWHAPGLVHWHNVAPVKALFFSIVACWRNFGAFTVYGLSWMGVFLGAGLAMSLLVTLL AVVGMGAGMASSIMVATAMMLAAMFLTSVVFTFRDSFEPPQQAGPESSDEPPLTS" gene complement(1362063..1363013) /locus_tag="Alide_1291" /db_xref="GeneID:10103327" CDS complement(1362063..1363013) /locus_tag="Alide_1291" /EC_number="2.7.1.39" /inference="protein motif:TFAM:TIGR00938" /note="TIGRFAM: homoserine kinase; KEGG: ajs:Ajs_3320 homoserine kinase; PFAM: aminoglycoside phosphotransferase" /codon_start=1 /transl_table=11 /product="homoserine kinase" /protein_id="YP_004125940.1" /db_xref="GI:319762003" /db_xref="GO:0004413" /db_xref="InterPro:IPR002575" /db_xref="InterPro:IPR005280" /db_xref="GeneID:10103327" /translation="MAVFTEVSSKEASDLLRRLQLGELLALRGIEGGIENTNYFVTSE QGEYVLTLFERLTFEQLPFYLHLMKHLAHAGIPVPDPQADMHGEILHTVAGKPAALAT KLRGKSQLAPQAAHCAAVGTLLARMHLAARDYERQQPNLRGLPWWNETVPVVLPHVGP GQAALLQSELAYQNHVAAGSGYAALPRGPIHADLFRDNVMFEGTELTGCFDFYFAGVD TWLFDLAVCLNDWCIDLPTGRHDGERTAAMLAAYQAVRPLTAAERELLPAMLRAGALR FWISRLWDFHLPRQASMLKPHDPAHFERVLRERVRHPVHP" misc_feature complement(1362087..1362929) /locus_tag="Alide_1291" /note="Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and...; Region: HomoserineK_II; cd05153" /db_xref="CDD:88616" misc_feature complement(1362219..1362926) /locus_tag="Alide_1291" /note="Phosphotransferase enzyme family; Region: APH; pfam01636" /db_xref="CDD:190058" misc_feature complement(order(1362324..1362326,1362381..1362386, 1362414..1362416,1362420..1362425,1362435..1362437, 1362702..1362713,1362777..1362779,1362861..1362863, 1362867..1362869,1362900..1362902,1362912..1362914)) /locus_tag="Alide_1291" /note="putative active site [active]" /db_xref="CDD:88616" misc_feature complement(order(1362324..1362326,1362435..1362437, 1362912..1362914)) /locus_tag="Alide_1291" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:88616" misc_feature complement(order(1362381..1362386,1362414..1362416, 1362420..1362425,1362435..1362437,1362702..1362713, 1362777..1362779,1362861..1362863,1362867..1362869, 1362900..1362902)) /locus_tag="Alide_1291" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88616" gene complement(1363091..1363456) /locus_tag="Alide_1292" /db_xref="GeneID:10103328" CDS complement(1363091..1363456) /locus_tag="Alide_1292" /inference="similar to AA sequence:KEGG:Dtpsy_2671" /note="KEGG: dia:Dtpsy_2671 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125941.1" /db_xref="GI:319762004" /db_xref="GeneID:10103328" /translation="MRAVHCLLLLAIASAPALAQNSGQNQAHPNTGERGQLLEKEQKA DGRLEQRVQRIVVEDAGSRIDELRVGGQTQSITVQPKTGTPMPSYEVQSNDGARARPG NFNESDTVTAPRVWNLRKF" sig_peptide complement(1363397..1363456) /locus_tag="Alide_1292" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 at residue 20" misc_feature complement(1363094..>1363312) /locus_tag="Alide_1292" /note="Protein of unknown function (DUF2782); Region: DUF2782; pfam11191" /db_xref="CDD:192720" gene complement(1363488..1363910) /locus_tag="Alide_1293" /db_xref="GeneID:10103329" CDS complement(1363488..1363910) /locus_tag="Alide_1293" /inference="similar to AA sequence:KEGG:Ajs_3318" /note="KEGG: ajs:Ajs_3318 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125942.1" /db_xref="GI:319762005" /db_xref="GeneID:10103329" /translation="MKHILALLACAASMPALADAEPRNNMPPLLQKSVKGGGITAARF DAGVLRAQLNKPEVTELMYGTFIFHNICAQQWYEPAQFAAVGLTRVELFNAEGTQGFA FDARGDTCAEMGRLGKNFRSFIAQYTVACTAGSCPPQR" sig_peptide complement(1363854..1363910) /locus_tag="Alide_1293" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.938 at residue 19" gene 1363992..1366757 /locus_tag="Alide_1294" /db_xref="GeneID:10103330" CDS 1363992..1366757 /locus_tag="Alide_1294" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR00593" /note="SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; TIGRFAM: DNA polymerase I; KEGG: dia:Dtpsy_2669 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease" /codon_start=1 /transl_table=11 /product="DNA polymerase i" /protein_id="YP_004125943.1" /db_xref="GI:319762006" /db_xref="InterPro:IPR001098" /db_xref="InterPro:IPR002298" /db_xref="InterPro:IPR002421" /db_xref="InterPro:IPR002562" /db_xref="InterPro:IPR008918" /db_xref="InterPro:IPR018320" /db_xref="InterPro:IPR019760" /db_xref="InterPro:IPR020046" /db_xref="InterPro:IPR020047" /db_xref="GeneID:10103330" /translation="MSDIKTLVLVDGSSYLYRAFHAMPDLRAVPGDPTSAATGAIRGM INMLQALKKEVHADYAACVFDASGPTFRDAIYPDYKANRAPMPEDLRAQIEPIHEVVR LLGWPVLAIKGVEADDVIGTLARAAAGQGMRVVISSGDKDLSQLVDEHVTIIDTMNGK RRDVAGVMAEFGVPPALMVDFQALVGDAVDNVPGVPKVGPKTAAKWLAEYGSLDALVA HAGAIKGVAGENLRGALDWLPTARELVTIKTDCDLSGHVAGLPAMDAIAFGAEQTGNL ADFYQKYGFKSLARALKPEAAPAGASGDLFDAPDASTVATRAQHRDVAYDIILTWAQL DDWLARVRAAPLAAIDTETTSLDELRAEIVGISFSVEPGAAAYIPLAHDGPDTPAQLP LAEVLARLKPWLEDPKHPKLGQHVKYDRHVFANHGIEVRGYVHDTMLQSYVLEVHKPH GLASLAERHTGRTGISYEDLCGKGAKQIPFSQVPVDKAAAYSCEDSDQTLDVHRVLWP QLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQEAYDI AGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR SLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRV REAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRAFHEGLDVHRATAAEVFGVALG QVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKNYIDRYFQRYPGVWQYMQDT KAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAERAAINAPMQGTAADLIKKAMVQV QDALDAAKPEVLMIMQVHDELVFELPEGDVDWLRAEVPRIMAGVAELKVPLLAEVGVG PDWDKAH" misc_feature 1364004..1366754 /locus_tag="Alide_1294" /note="DNA polymerase I; Provisional; Region: PRK05755" /db_xref="CDD:180237" misc_feature 1364010..1364501 /locus_tag="Alide_1294" /note="PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859" /db_xref="CDD:189029" misc_feature order(1364022..1364024,1364184..1364186,1364334..1364336, 1364340..1364345,1364409..1364411,1364415..1364417) /locus_tag="Alide_1294" /note="active site" /db_xref="CDD:189029" misc_feature order(1364022..1364024,1364340..1364342,1364409..1364411) /locus_tag="Alide_1294" /note="metal binding site 1 [ion binding]; metal-binding site" /db_xref="CDD:189029" misc_feature 1364202..1364240 /locus_tag="Alide_1294" /note="putative 5' ssDNA interaction site; other site" /db_xref="CDD:189029" misc_feature order(1364334..1364336,1364343..1364345) /locus_tag="Alide_1294" /note="metal binding site 3; metal-binding site" /db_xref="CDD:189029" misc_feature order(1364409..1364411,1364415..1364417) /locus_tag="Alide_1294" /note="metal binding site 2 [ion binding]; metal-binding site" /db_xref="CDD:189029" misc_feature 1364514..1364732 /locus_tag="Alide_1294" /note="H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898" /db_xref="CDD:188618" misc_feature order(1364544..1364567,1364571..1364600,1364604..1364615) /locus_tag="Alide_1294" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:188618" misc_feature order(1364550..1364552,1364559..1364561) /locus_tag="Alide_1294" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:188618" misc_feature 1365009..1365551 /locus_tag="Alide_1294" /note="DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139" /db_xref="CDD:176651" misc_feature order(1365039..1365050,1365057..1365059,1365231..1365236, 1365240..1365248,1365342..1365347,1365390..1365395, 1365462..1365464,1365474..1365476) /locus_tag="Alide_1294" /note="active site" /db_xref="CDD:176651" misc_feature order(1365039..1365041,1365045..1365047,1365246..1365248, 1365462..1365464,1365474..1365476) /locus_tag="Alide_1294" /note="catalytic site [active]" /db_xref="CDD:176651" misc_feature order(1365042..1365050,1365057..1365059,1365231..1365236, 1365240..1365245,1365342..1365347,1365390..1365395, 1365462..1365464,1365474..1365476) /locus_tag="Alide_1294" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176651" misc_feature 1365612..1366745 /locus_tag="Alide_1294" /note="Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637" /db_xref="CDD:176474" misc_feature order(1365861..1365863,1365873..1365875,1365882..1365887, 1365960..1365968,1365972..1365974,1365978..1365989, 1366083..1366088,1366170..1366172,1366230..1366232, 1366242..1366244,1366494..1366496,1366515..1366517, 1366608..1366616) /locus_tag="Alide_1294" /note="active site" /db_xref="CDD:176474" misc_feature order(1365861..1365863,1365873..1365875,1365882..1365887, 1365960..1365968,1365972..1365974,1365978..1365989, 1366266..1366268,1366491..1366496,1366503..1366505, 1366515..1366517,1366608..1366616) /locus_tag="Alide_1294" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176474" misc_feature order(1366083..1366088,1366092..1366094,1366170..1366172, 1366230..1366232,1366242..1366244,1366614..1366616) /locus_tag="Alide_1294" /note="catalytic site [active]" /db_xref="CDD:176474" gene complement(1366774..1367703) /locus_tag="Alide_1295" /db_xref="GeneID:10103331" CDS complement(1366774..1367703) /locus_tag="Alide_1295" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B1464 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125944.1" /db_xref="GI:319762007" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103331" /translation="MNIAPRQLRMFLALAESLNFSKTAEQLFMTQPSLSKAIRDLEEA LGLPLFERTTRSVQLTASGSRLAAIARAVVGEYDAGLQRMLSSAEREARHIGIASLPS LAHVILPQVCAALERRYHLPQITVHDCSNDACIQRLLNYQADFALASVAPSHPDLKYE EVLRDRFVLLSCGPWRQRLKPTMHLDDLVDLPLISMTDASTAMRYISAAYLQRGVEFR PKMQFDQVGTIAGFVKKGLGIAVLPYLGMMPMLSLRGLRLSEIADGPVRSVGIVTRRV GAPTSVALAATEEVKATTQGLMNKHPGWILPPS" misc_feature complement(1366828..1367688) /locus_tag="Alide_1295" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1367515..1367688) /locus_tag="Alide_1295" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1366846..1367424) /locus_tag="Alide_1295" /note="TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440" /db_xref="CDD:176131" misc_feature complement(order(1366999..1367004,1367008..1367013, 1367029..1367046,1367320..1367325,1367326..1367334, 1367338..1367340,1367356..1367358,1367365..1367370, 1367374..1367379)) /locus_tag="Alide_1295" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176131" gene 1367780..1368595 /locus_tag="Alide_1296" /db_xref="GeneID:10103332" CDS 1367780..1368595 /locus_tag="Alide_1296" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: afv:AFLA_059270 short-chain dehydrogenases/reductase, putative" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004125945.1" /db_xref="GI:319762008" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10103332" /translation="MTDEEADVLDLTGKVALVMGCGAVADGWGNGRATAVLLARQGAR VFGTDLALPHAQETARLVRSEGGTCEVMACDATRSDQVADAVAQCVERFGRIDILVNN VGVSQPGGPVDMDEDVWDAQIQVNLKSAYLSCKHVIAHMRSQGGGAIVNVASVAGLRY IGKPQVAYAAAKAGLLHFTHTTAVIHAAEGIRLNCVVPGLMHTPLIEGLAAKYAKGDT QGFIDHRNNQVPMKRMGTGWDTAHAVLFLVADESRYVTGTEIVVDGGLIAATR" misc_feature 1367807..1368580 /locus_tag="Alide_1296" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1367870..1368568 /locus_tag="Alide_1296" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature order(1367924..1367932,1367999..1368007,1368083..1368091, 1368152..1368154,1368233..1368241,1368281..1368283, 1368293..1368295,1368371..1368382,1368386..1368391) /locus_tag="Alide_1296" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature order(1368155..1368157,1368239..1368241,1368281..1368283, 1368293..1368295) /locus_tag="Alide_1296" /note="active site" /db_xref="CDD:187544" gene 1368791..1369759 /locus_tag="Alide_1297" /db_xref="GeneID:10103333" CDS 1368791..1369759 /locus_tag="Alide_1297" /inference="similar to AA sequence:KEGG:Daci_0250" /note="KEGG: dac:Daci_0250 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125946.1" /db_xref="GI:319762009" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103333" /translation="MIHRRIWLACAGAALACSVLPSAWAQGYPSQSIRLIVPFAPGGA VDQTARIIGNRLGEALGQPIVIDNKPGASGSVGAGELHRARPDGYTLMLALDSQAVNH HIVKNLPFDTFKSFDYLSLLVTTPQILVTRNDVPAKNFGELVAYLQAHPKSSYGSAGT ASAGHVNSAQLSLAKGLKTEHVPYKGAAPLLTDLLGGHIDYAFAGLSVMLPHIKSGKI RAIAVSSPRRSAQLPDVPAVNEFIPGFEFPTWIGLVAPPGMPADVRGKIIKAVHDVMH DPQVARRFGDSAFDIVNGSPEDFAARVRKDSDVMADLVARKIVTAD" misc_feature 1368791..1369732 /locus_tag="Alide_1297" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" sig_peptide 1368791..1368868 /locus_tag="Alide_1297" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 26" misc_feature 1368935..1369732 /locus_tag="Alide_1297" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1369779..1370303 /locus_tag="Alide_1298" /db_xref="GeneID:10103334" CDS 1369779..1370303 /locus_tag="Alide_1298" /inference="protein motif:PFAM:PF02627" /note="PFAM: Carboxymuconolactone decarboxylase; KEGG: bpt:Bpet3546 hypothetical protein" /codon_start=1 /transl_table=11 /product="carboxymuconolactone decarboxylase" /protein_id="YP_004125947.1" /db_xref="GI:319762010" /db_xref="InterPro:IPR003779" /db_xref="GeneID:10103334" /translation="MARIPYADCTSAAVRPLADRIVAERGSILHLYQMLLHSAPVAEG WLNYLTAIRQKSSLPGDVRELVIMRVALLNHAPYEADQHAPIALREGVSQDKLDALKE WQGCPLFDARERAVLAYTDAMTRQVQVSDEVFASVAAHFEPPRLVELTATVAAYNMVS RFLEALQIHSHDAR" misc_feature 1369893..1370144 /locus_tag="Alide_1298" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene complement(1370311..1371306) /locus_tag="Alide_1299" /db_xref="GeneID:10103335" CDS complement(1370311..1371306) /locus_tag="Alide_1299" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet4163 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125948.1" /db_xref="GI:319762011" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103335" /translation="MRLDLRALRSFVTVASAGSISSAAHSLHIAQPALSVQIKQLEEQ LGAALFDRHPRGVVLTAVGERLLGHAVEILRRVDVAYDDVRQAVDQPSGRVAIALPQS VAKFVTVPLVQAVVRQWPQIHLQMVEMSSGYIPQQLLHGLVDIGMTFGTEDDARMRFM HVLQEELAFVTTAQQLARHRGGPDDDATHMTLHDAARFPMVLPTTTQSLRRVLDAYMA KAGVAPRIVVEVNTIHEILALVAAGIGSTILSFAAVHDMLAARQLLALPVGRPAMSRS IYACRSATLPMSIAATKVHEQLLATIVSLSSSQRWPRSTVIAALSQGDGRVAPSG" sig_peptide complement(1371232..1371306) /locus_tag="Alide_1299" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.784) with cleavage site probability 0.543 at residue 25" misc_feature complement(1370377..1371300) /locus_tag="Alide_1299" /note="nitrogen assimilation transcriptional regulator; Provisional; Region: PRK11233" /db_xref="CDD:183045" misc_feature complement(1371115..1371294) /locus_tag="Alide_1299" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1370413..1371027) /locus_tag="Alide_1299" /note="The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold; Region: PBP2_Nac; cd08433" /db_xref="CDD:176124" misc_feature complement(order(1370581..1370586,1370590..1370595, 1370611..1370628,1370923..1370943,1370947..1370949, 1370959..1370961,1370968..1370973,1370977..1370982)) /locus_tag="Alide_1299" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176124" gene 1371441..1372415 /locus_tag="Alide_1300" /db_xref="GeneID:10103336" CDS 1371441..1372415 /locus_tag="Alide_1300" /inference="similar to AA sequence:KEGG:Bpet4162" /note="KEGG: bpt:Bpet4162 secreted protein" /codon_start=1 /transl_table=11 /product="secreted protein" /protein_id="YP_004125949.1" /db_xref="GI:319762012" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103336" /translation="MHQLTRRAWVAAVLAATLPLQAAAQSGTGKTATLVVPFAAGGPS DFIARLLARPLGREMGAQVIIDNRPGASGNIGAKQVMASKPDGLTLVHTTIAMQAVNP LMYPDQDFNPSRDLVPVGITGALPNVLVVHPSSGIKTIAELVAKGRQKNVQLNFATFG PGSSPHFYGMLFEKTTQVAAEPIAYKGSGDAAKDMLAGRIDFMFDSMTTAIANVKAGK LVALAITSPQRSALLPDVPTLKELGHGGVDVNFWLALQVPARTPPEIVSALRQAISRA VQDPEYKQGVAARGVENLHVAPEQLDAFFASETKRWRDAALSIGIKAE" sig_peptide 1371441..1371515 /locus_tag="Alide_1300" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.737 at residue 25" misc_feature 1371528..1372403 /locus_tag="Alide_1300" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1371579..1372403 /locus_tag="Alide_1300" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1372443..1373636 /locus_tag="Alide_1301" /db_xref="GeneID:10103337" CDS 1372443..1373636 /locus_tag="Alide_1301" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: bpt:Bpet4161 acyl-CoA transferase/carnitine dehydratase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004125950.1" /db_xref="GI:319762013" /db_xref="InterPro:IPR000923" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10103337" /translation="MQPLQGMKVVDLTKVLAGPLCGQYLGEYGADVVKVETVGGDDTR RWLPQAQGQSAVFVAVNHNKRSIAVDLKSQEGREIVHRLVEGADIVLQGFGGGTAKKL GVDHETLSALNDRLIYCEISGYGRNGPLGNAPGYDVMLQAFSGMLSTMGQPGGEYARA SFSPVDIGTAMNALSGVLAAVVERGRTGKGVYLEVSLLDTALGFMTYMAQSYWQTGAN PRPMGTAHPSMVPYQAFDAADGAIMLGAGNDAQWRRFCAVAGLQDWVDHPDFATNALR VANHGKVVALLEPVMKRRTVAQWLVCLEQASVPCSPIHTLGQALAHPQVQARAIMAET EHPVLGRVRNIGHPAQFRHQPRTASRPAPLLGEHTREILRELGYDAQRIARLQQQGAV AAVSH" misc_feature 1372443..1373618 /locus_tag="Alide_1301" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1373660..1374424 /locus_tag="Alide_1302" /db_xref="GeneID:10103338" CDS 1373660..1374424 /locus_tag="Alide_1302" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bpt:Bpet4160 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004125951.1" /db_xref="GI:319762014" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10103338" /translation="MSLFSYEVNDRVAEILFNNPPVNALTQALLGDFLEALERASHDP EVRAVIIGSQVPGRFSAGLDLTAVHTGAHQKVRALLDLLYVRMTEVQFRMGKPTIAAV GGTARGGGMTIAISCDMVVASSDATFGYPEIDAGVLPSIHFTHLPRIVGRHRAFELLF TGRAFDAQEAQSLGLVSRLTEPGKALEGARALAQTLCGKSPDVVRFGRNAFMLANDNG YRQAVAAAADSFCNVALTDAAREGIAAFVEKRKPMW" misc_feature 1373660..1374418 /locus_tag="Alide_1302" /note="enoyl-CoA hydratase; Provisional; Region: PRK07658" /db_xref="CDD:181070" misc_feature 1373669..1374247 /locus_tag="Alide_1302" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1373723..1373725,1373729..1373731,1373828..1373830, 1373840..1373854,1373972..1373974,1373978..1373986, 1374050..1374055,1374062..1374064) /locus_tag="Alide_1302" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1373846..1373848,1373984..1373986) /locus_tag="Alide_1302" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1373924..1373926,1373948..1373950,1374011..1374022, 1374056..1374067,1374083..1374085,1374089..1374091, 1374092..1374094,1374098..1374103,1374116..1374121, 1374125..1374130,1374134..1374139,1374146..1374148, 1374179..1374181,1374188..1374190,1374233..1374235, 1374242..1374247) /locus_tag="Alide_1302" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1374510..1375394 /locus_tag="Alide_1303" /db_xref="GeneID:10103339" CDS 1374510..1375394 /locus_tag="Alide_1303" /EC_number="3.1.1.45" /inference="protein motif:PRIAM:3.1.1.45" /note="KEGG: dia:Dtpsy_2668 carboxymethylenebutenolidase" /codon_start=1 /transl_table=11 /product="carboxymethylenebutenolidase" /protein_id="YP_004125952.1" /db_xref="GI:319762015" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10103339" /translation="MLHGDLRQDFDALVPVQGASRRSALQLMLGAGYAAAAAPVMAQQ AIATPADGLSAGAVSFTVDGARVHAYRAAPQGWSGLPVVLVVSEIFGVHAYIADICRR LAHAGYLAIAPELFARQGDPGAYGEVAKLMSEIIAKVPDAQVIADLDGAVQWAGAHGG DLRKIAITGFCWGGRITWLYAAHGPVKAGVAWYGRLVGQASALTPKQPADVAPILKAP VLGLYGEKDGGIPLDTVDKMKVALGAGSPAAKASEFVVYPDAPHAFHADYRPSYRKEA AQDGWSRMLAWFKRHGVA" misc_feature 1374714..1375385 /locus_tag="Alide_1303" /note="Dienelactone hydrolase family; Region: DLH; pfam01738" /db_xref="CDD:190087" gene 1375505..1376323 /locus_tag="Alide_1304" /db_xref="GeneID:10103340" CDS 1375505..1376323 /locus_tag="Alide_1304" /inference="protein motif:PFAM:PF02535" /note="PFAM: zinc/iron permease; KEGG: dia:Dtpsy_2667 zinc/iron permease" /codon_start=1 /transl_table=11 /product="zinc/iron permease" /protein_id="YP_004125953.1" /db_xref="GI:319762016" /db_xref="GO:0046873" /db_xref="InterPro:IPR003689" /db_xref="GeneID:10103340" /translation="MTLIAIILATLAAGIGSVWIAAALLRAGLGGRWRVGPQHLLSLA AGALLATAFMHLLPEAFEGPADAHDLFTVLLLGLVFFFLLDKAELWHHGHEHSAAERH IHGPAHGHAAHDHHHGHHHHGHGGWSLLTGDSVHCFGDGVLIASAFVADMRLGVVAAL SVLAHEVPHHIGDLVVLRNSSRHRSAALLKVSLAGAVTALGGLVGYYLVGLWEGALPY FLAIASSSFVYVALADLIPQLQKRLSAAQTLAQIAWLAAGIVAVTLVSGLAHTH" sig_peptide 1375505..1375588 /locus_tag="Alide_1304" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.660) with cleavage site probability 0.351 at residue 28" misc_feature <1375883..1376314 /locus_tag="Alide_1304" /note="Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]; Region: COG0428; cl00437" /db_xref="CDD:185996" gene complement(1376423..1377166) /locus_tag="Alide_1305" /db_xref="GeneID:10103341" CDS complement(1376423..1377166) /locus_tag="Alide_1305" /inference="protein motif:PFAM:PF00072" /note="KEGG: ajs:Ajs_3314 LytR/AlgR family transcriptional regulator; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004125954.1" /db_xref="GI:319762017" /db_xref="GO:0000156" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR007492" /db_xref="GeneID:10103341" /translation="MRILIVDDEALARSRLRTLLGDCDARHQVMEAAHAGEALARLGI SGGRAVDLVLLDIHMPGQDGLALAHQIQGLPHPPAIVFVTAHADHALSAFELDAVDYL TKPVRLQRLQQALAKVQRTLGQGAPAQAVQPAEGEALLIQERGRTERVPLAEVLYLRA EQKYVTVRTATRSFVVDDALSELEARHAAHFLRVHRSTLVARRAMRALERHYDADEGE GWAVRLHGLTEPLPVSRRQVAAVREALAG" misc_feature complement(1376426..1377166) /locus_tag="Alide_1305" /note="Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]; Region: LytT; COG3279" /db_xref="CDD:33090" misc_feature complement(1376813..1377157) /locus_tag="Alide_1305" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1376852..1376857,1376864..1376866, 1376915..1376917,1376975..1376977,1376999..1377001, 1377143..1377148)) /locus_tag="Alide_1305" /note="active site" /db_xref="CDD:29071" misc_feature complement(1376999..1377001) /locus_tag="Alide_1305" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1376975..1376983,1376987..1376992)) /locus_tag="Alide_1305" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1376849..1376857) /locus_tag="Alide_1305" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1376435..1376734) /locus_tag="Alide_1305" /note="LytTr DNA-binding domain; Region: LytTR; cl04498" /db_xref="CDD:156100" gene complement(1377223..1377942) /locus_tag="Alide_1306" /db_xref="GeneID:10103342" CDS complement(1377223..1377942) /locus_tag="Alide_1306" /EC_number="3.1.3.3" /inference="protein motif:TFAM:TIGR00338" /note="TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: dia:Dtpsy_2506 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="phosphoserine phosphatase serb" /protein_id="YP_004125955.1" /db_xref="GI:319762018" /db_xref="GO:0004647" /db_xref="GO:0016791" /db_xref="InterPro:IPR004469" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006383" /db_xref="GeneID:10103342" /translation="MTTSLAPGINVQGTLPSTRLADYKLIAFDMDSTLINIECVDEIA DFVGCKAEVAAITEAAMQGVITDFKESLRRRVALLKGVTMADLERVYSERLRINPGAA ELVRSCQAAGLKTLLVSGGFTFFAHRVREQLGIDFVRANVLEVRSSTNCGELTGRMVD QAWGDICDGLEKRRTMLEVASLLGIEPEQCIAMGDGANDLPMMGAAGLSVAYHAKPAV RAQAQVAINQGGLDRLLEVLK" misc_feature complement(1377322..1377873) /locus_tag="Alide_1306" /note="haloacid dehalogenase-like hydrolase; Region: Hydrolase; pfam00702" /db_xref="CDD:189678" misc_feature complement(1377319..1377675) /locus_tag="Alide_1306" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature complement(1377586..1377588) /locus_tag="Alide_1306" /note="motif II; other site" /db_xref="CDD:119389" gene 1378284..1380458 /locus_tag="Alide_1307" /db_xref="GeneID:10103343" CDS 1378284..1380458 /locus_tag="Alide_1307" /inference="protein motif:TFAM:TIGR01509" /note="KEGG: ppw:PputW619_2172 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; Mannitol dehydrogenase domain" /codon_start=1 /transl_table=11 /product="had-superfamily hydrolase, subfamily ia, variant 3" /protein_id="YP_004125956.1" /db_xref="GI:319762019" /db_xref="InterPro:IPR005833" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006402" /db_xref="InterPro:IPR013118" /db_xref="GeneID:10103343" /translation="MLQFQGKTIDTAIFDMDGTMFDTERLRFQTLSQASEELFGKPFT EPVLLGSLGLSATKAEALAKQHYGQDFPYAAIRRRADELELAHVRTQGVPIKPGLLPV LERLRKSGLKMAVATSSRRAIAEEYLINANIYKYFDLCVCGDEVVQGKPHPEIFVRAA EALNSQPAQCLMFEDSENGVRSAADAGGVVILVEDIQMPPPAVARRAFGVYGGLSEFL QDLAACTPKMSMPAVTEPFPQAVNLLKAGIHGFGAMGGGYLAQVFSHWDGYTRPCEII ASTGNALLREAIDAFGKFSVRYGSLAFDQTIEQLRVIDAADTDAVAGMYRDCEIVALC VPEQAVAAQAGVIAQGLAERFAAHGRELTVLVVLNKVGGAEFVRAQVEAALLQRVASK VCQRILERTRFSETVVTRIVSKLTEDALVRQLRIKSELYKKNVVAVRESSPHVGDWAE ALPGDTAEVVAPHVSTLRDAGEPASALAPLHLILFNSETDMPLYVQQGSDLLEHLRQI DTVADIAVIQLLKNRLWNGTHAIVAWYAALLGYPSIGHAMGDARVQALMDQLLDAELA PALAAQFPELRTRLAEFIATFRNRCAHAFKDPCERVGRDPLRKLQRGERVLGSLAMAA AQGVAAPALAFGAALAVHYALHHPPAAEEDECRTIRALYARREALQDVLAWRGEYHGA PFDGLDPVADAALLAAVQLPFDGLQAGGLDYCWESAAEAGVG" misc_feature 1378320..1378862 /locus_tag="Alide_1307" /note="beta-phosphoglucomutase family hydrolase; Region: PGMB-YQAB-SF; TIGR02009" /db_xref="CDD:162658" misc_feature 1378545..1378862 /locus_tag="Alide_1307" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature 1378632..1378634 /locus_tag="Alide_1307" /note="motif II; other site" /db_xref="CDD:119389" misc_feature <1379844..>1380137 /locus_tag="Alide_1307" /note="Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125" /db_xref="CDD:149275" gene complement(1380625..1381305) /locus_tag="Alide_1308" /db_xref="GeneID:10103344" CDS complement(1380625..1381305) /locus_tag="Alide_1308" /inference="similar to AA sequence:KEGG:Dtpsy_2505" /note="KEGG: dia:Dtpsy_2505 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125957.1" /db_xref="GI:319762020" /db_xref="GeneID:10103344" /translation="MLLEAALALLALAAALAARPWRLLASRKPLAHEAHGAPSALWTP LLATLAILPWAWALPTLHRMPLQLQWSGACLVLLMLGWPLAVPVLLAVGAIAALVSPG LSWADALGLAVWQGVVPATLALLLGALLRRGAGTHALGGVRPFVYVLGRAFLGTAACV FVAGSLSQWAGHTLPGVGEQLSLVARWLMAWGDAVVTGMLCAVFVAFKPEWLATWSDR LYLHDKKP" sig_peptide complement(1381252..1381305) /locus_tag="Alide_1308" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.745 at residue 18" misc_feature complement(1380640..>1380747) /locus_tag="Alide_1308" /note="Cobalt uptake substrate-specific transmembrane region; Region: CbiM; cl00397" /db_xref="CDD:185967" gene complement(1381312..1384803) /locus_tag="Alide_1309" /db_xref="GeneID:10103345" CDS complement(1381312..1384803) /locus_tag="Alide_1309" /inference="protein motif:TFAM:TIGR00580" /note="TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; KEGG: ajs:Ajs_3157 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="YP_004125958.1" /db_xref="GI:319762021" /db_xref="GO:0003684" /db_xref="GO:0004386" /db_xref="GO:0005524" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR003711" /db_xref="InterPro:IPR004576" /db_xref="InterPro:IPR005118" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:10103345" /translation="MQLPKLSPAKRFTLPRPVGSSDALLLARLGLQQKAEGRTTAIVT ADAGDAQRLIDEIAFFAPDLRCALFPDWETLPYDSFSPHQDLISERLATLWRISQKDR DTGADVVLVPATTALYRLAPPSFLAGYTFHFKTGQRLDEARLRAQLTLAGYQHVSQVV GHGEYAVRGGLIDLFPMGSPQPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGR EFPMDEAARAKFRQRWRELLEGDPTRSRIYKDMGNGVATAGIEYYLPLFFDETATVFD YLGADATVVLHGDLEGAFQRFWQDTRERYRLIQGDPDHPVLPPEALFLSADQFYGQAK PHAQLSLRPGVEDVQDNAQFQKLPDLSVVRGADDPLARLQAHIHATPQRVLLLAESDG RRESLLDFLRASGLNPPAFDSLAEFQSTPEERVGIATAALATGFAWVEEGLDLVTETE LFAAAPTTRRRKKQEQASDVEALIKDLSELKVGDPVVHNQHGIGRYRGLVHMDLGSKN PDGTPALQEFLHLEYADKAVLYVPVSQLQLIGRYTGVSADEAPLHKLGSGQWEKAKRK AAEQVRDAAAELLNIYARRAARQGHAFRYSPQDYEQFVADFGFEETADQKAAIHAVVQ DMISPRPMDRLVCGDVGFGKTEVALRACFVAVTGGKQVAFLAPTTLLAEQHYRTLCDR FAKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGTHKLLSESTKFKNLGLLIIDE EHRFGVRHKEAMKQLRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKT FVRSEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQKLEEILPEARIAVAHGQMP ERELEKVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQLHQLRGRVG RSHHQAYAYLMVPDLDGLTKQAQQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGEN QSGNMLEVGFQLYNEMLAEAVRCLKAGKEPDLLAPMQAATDINLHAPALLPDDYCGDV HLRLSFYKKLATARTSDQIDTLLEEIVDRFGKLPPQAQTLIDVHRLRVLSAPYGVVKV DAAPGIINITFKPRPPVDPMAIIGLIQKNKHIKLAGNEKLRIERALPDPAARAQMVRD VLRSLGQPLAETATVPA" misc_feature complement(1381345..1384803) /locus_tag="Alide_1309" /note="Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197" /db_xref="CDD:31390" misc_feature complement(1383055..1383369) /locus_tag="Alide_1309" /note="CarD-like/TRCF domain; Region: CarD_TRCF; cl00588" /db_xref="CDD:193879" misc_feature complement(1382500..1382910) /locus_tag="Alide_1309" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature complement(1382869..1382883) /locus_tag="Alide_1309" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature complement(1382578..1382589) /locus_tag="Alide_1309" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature complement(1382029..1382409) /locus_tag="Alide_1309" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature complement(order(1382164..1382172,1382245..1382250, 1382314..1382325)) /locus_tag="Alide_1309" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(order(1382059..1382061,1382068..1382070, 1382080..1382082,1382146..1382148)) /locus_tag="Alide_1309" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(1381459..1381761) /locus_tag="Alide_1309" /note="TRCF domain; Region: TRCF; pfam03461" /db_xref="CDD:190644" gene 1384882..1385730 /locus_tag="Alide_1310" /db_xref="GeneID:10103346" CDS 1384882..1385730 /locus_tag="Alide_1310" /inference="protein motif:TFAM:TIGR00453" /note="KEGG: dia:Dtpsy_2503 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase" /codon_start=1 /transl_table=11 /product="2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase" /protein_id="YP_004125959.1" /db_xref="GI:319762022" /db_xref="GO:0003824" /db_xref="InterPro:IPR001228" /db_xref="InterPro:IPR018294" /db_xref="GeneID:10103346" /translation="MSDLPPAFNPVRHVPGRFWALVPCAGTGTRAVRAQPGAVAVLPK QYQVVAGHPMVLHTLAAFAGVARLAGTLVAVAPGDAFFDGHAHPAFFAVPCGGATRAD TVLGGIKALQARGASDDDWVLVHDAARCLVTTAQIDALIDACQHDSVGGLLAHKLADT LKTATDGPGGVRVASTVDRSDKWLAQTPQMFRIGALRRALEHVGAAATDEASAMEAMG LRPRLVPGGAQNFKVTYPDDFALAEAVLAQRMHGATLERFGGARGAAASEPVQTFFSS TTPRQR" misc_feature 1384933..1385607 /locus_tag="Alide_1310" /note="CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516" /db_xref="CDD:133009" misc_feature order(1384948..1384950,1384954..1384971,1385011..1385013, 1385170..1385181,1385188..1385190,1385257..1385265, 1385575..1385577) /locus_tag="Alide_1310" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133009" misc_feature order(1385266..1385268,1385326..1385328,1385350..1385352, 1385356..1385358,1385419..1385436,1385503..1385508, 1385512..1385517,1385524..1385526,1385539..1385550, 1385560..1385565) /locus_tag="Alide_1310" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133009" gene 1385751..1386230 /locus_tag="Alide_1311" /db_xref="GeneID:10103347" CDS 1385751..1386230 /locus_tag="Alide_1311" /inference="protein motif:TFAM:TIGR00151" /note="KEGG: dia:Dtpsy_2502 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase" /codon_start=1 /transl_table=11 /product="2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase" /protein_id="YP_004125960.1" /db_xref="GI:319762023" /db_xref="GO:0008685" /db_xref="InterPro:IPR003526" /db_xref="InterPro:IPR020555" /db_xref="GeneID:10103347" /translation="MDFRIGEGWDVHALVPGRRLVIGGVDIPHTMGLLGHSDADVLLH AITDALLGAAALGDIGSHFPDTDARFRGADSVVLLTEAARRVRDKGYAIGNVDSTVVA QAPRLAAHIPAMRERIAGALSLQGGQVNVKAKTAERLGPVGQGLAIEARAAVLLFKE" misc_feature 1385760..1386218 /locus_tag="Alide_1311" /note="MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid...; Region: MECDP_synthase; cd00554" /db_xref="CDD:100025" misc_feature order(1385760..1385765,1385769..1385771,1385775..1385777, 1385781..1385789,1385799..1385801,1385904..1385906, 1385910..1385915,1385919..1385924,1386033..1386035, 1386039..1386041,1386045..1386047,1386066..1386068, 1386072..1386074,1386138..1386140,1386144..1386149, 1386156..1386164,1386201..1386203,1386207..1386209, 1386213..1386215) /locus_tag="Alide_1311" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100025" misc_feature order(1385778..1385780,1385784..1385786,1385880..1385882) /locus_tag="Alide_1311" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:100025" misc_feature order(1385922..1385924,1385928..1385930,1386054..1386059, 1386063..1386074,1386147..1386155) /locus_tag="Alide_1311" /note="CDP-binding sites; other site" /db_xref="CDD:100025" gene complement(1386303..1387808) /locus_tag="Alide_1312" /db_xref="GeneID:10103348" CDS complement(1386303..1387808) /locus_tag="Alide_1312" /inference="protein motif:PFAM:PF02518" /note="KEGG: dia:Dtpsy_2501 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004125961.1" /db_xref="GI:319762024" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:10103348" /translation="MNATQDMPTDATSPAPLEASASRRPQRSRVGLNLFWRTFFLLAL LLVGCILAWVQTLRALEFEPRTLQTAQQIASMVNLSRAALVHSDAIARVSLLKTMADQ EGVRILPREPKDKFELLPPSALGLRLTEELTQRLGPGTIVASSVNGENGLWVGFTING DPNWLLMDRSRLSAAGGKTWLIWLTIVGALSLAGAAIIARLINRPLKQLSDAANRVRD GDFAAGQLDEEAVTSEIREVNIGFNRMAQKLAKLEQDRAVMLAGISHDLRTPLARLRL ETEMSVTDEVAREHMVADIVQLDATIDKFLDYARPDTVALSPVNLHGVVSSCVYAVQD HRELQITMNVPEDLMAMADEVELARVISNLLENARRYGKNRETGITTVDIAAKAREKW VLIKLRDHGPGAPPEQLANLTKPFFRGDSARTAAAGAGLGLSIVDKTVQRMGGIFALA NSASGGLVAHIQLQRATDLPEGQDPQQRLQRPQVKRHLPPRSGAPAPQQKQ" misc_feature complement(1387062..>1387199) /locus_tag="Alide_1312" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(1386870..1387034) /locus_tag="Alide_1312" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cl00080" /db_xref="CDD:153499" misc_feature complement(1386420..1386740) /locus_tag="Alide_1312" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1386432..1386434,1386438..1386443, 1386456..1386458,1386462..1386464,1386510..1386521, 1386597..1386602,1386606..1386608,1386612..1386614, 1386618..1386620,1386699..1386701,1386708..1386710, 1386720..1386722)) /locus_tag="Alide_1312" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1386708..1386710) /locus_tag="Alide_1312" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1386513..1386515,1386519..1386521, 1386600..1386602,1386606..1386608)) /locus_tag="Alide_1312" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(1387881..1388612) /locus_tag="Alide_1313" /db_xref="GeneID:10103349" CDS complement(1387881..1388612) /locus_tag="Alide_1313" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_2500 osmolarity response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004125962.1" /db_xref="GI:319762025" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10103349" /translation="MASTTNRTDKVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKAL NRILLRETVDLIVLDLMMPGEDGLSICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVG ADDYLGKPFNPRELLARIHAVLRRRPPQEAPGAPSGDNEVVTFGPFTFDLGTRALQKN GEELPLTTGEFAMLKALVRHPRQPLSREKLALLARGREFEPFDRSLDVQISRLRKLVE VDAAAPRYIQTVWGVGYVFVPDGTN" misc_feature complement(1387884..1388603) /locus_tag="Alide_1313" /note="osmolarity response regulator; Provisional; Region: ompR; PRK09468" /db_xref="CDD:181883" misc_feature complement(1388241..1388528) /locus_tag="Alide_1313" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1388283..1388288,1388295..1388297, 1388352..1388354,1388412..1388414,1388436..1388438)) /locus_tag="Alide_1313" /note="active site" /db_xref="CDD:29071" misc_feature complement(1388436..1388438) /locus_tag="Alide_1313" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1388412..1388420,1388424..1388429)) /locus_tag="Alide_1313" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1388280..1388288) /locus_tag="Alide_1313" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1387902..1388186) /locus_tag="Alide_1313" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(1387911..1387913,1387926..1387928, 1387962..1387967,1387989..1387991,1387998..1388000, 1388052..1388057,1388112..1388114)) /locus_tag="Alide_1313" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 1388809..1389537 /locus_tag="Alide_1314" /db_xref="GeneID:10103350" CDS 1388809..1389537 /locus_tag="Alide_1314" /inference="protein motif:PFAM:PF04402" /note="PFAM: protein of unknown function DUF541; KEGG: dia:Dtpsy_2499 protein of unknown function DUF541" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125963.1" /db_xref="GI:319762026" /db_xref="InterPro:IPR007497" /db_xref="GeneID:10103350" /translation="MKEDMKNAFKVIASSALLVGATAVFAQNGPVAALQNVLQLSASG TVEVQQDLLVLTLAATKEAPEAAIVQAQLQQVLDAALAEARRAAQPQQMDVRTGAFGM YPRHGKDGKIAGWQGRAELVLQGRDFARITGTAGRIQGMTISQIAFDLSREARAKVEG EAQAKAIEAFKARAAELARGFGFAGYTLREVAVHSNEMAPGPRPRIMAMEAKAASLAA DAPVPVEAGKAQVAVTISGSVQLR" sig_peptide 1388809..1388889 /locus_tag="Alide_1314" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 27" misc_feature 1388875..1389531 /locus_tag="Alide_1314" /note="Protein of unknown function (DUF541); Region: SIMPL; cl01077" /db_xref="CDD:194028" gene complement(1389592..1390374) /locus_tag="Alide_1315" /db_xref="GeneID:10103351" CDS complement(1389592..1390374) /locus_tag="Alide_1315" /inference="protein motif:TFAM:TIGR01963" /note="KEGG: dia:Dtpsy_2498 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-hydroxybutyrate dehydrogenase" /protein_id="YP_004125964.1" /db_xref="GI:319762027" /db_xref="GO:0003858" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR011294" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10103351" /translation="MLNGKTALVTGSTSGIGLGIAKALARQGANIVLNGFGDVDGPRA EVLAAGQAAGARVAYHGADMSRPADIEDMLKYAATQFGRVDILVNNAGIQHVASVQDF PPERWDAIIAINLTSAFHTTRLALPGMLANDWGRIINVASVHGLVASAQKSAYVAAKH GIVGLTKVTALENATTGVTCNAICPGWVLTPLVQKQVDAKAAALGISNDEAKKVLLGE KEPSMQFTTPEELGELAVFFCSPAANNVRGVAWNMDGGWAAQ" sig_peptide complement(1390297..1390374) /locus_tag="Alide_1315" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.683) with cleavage site probability 0.649 at residue 26" misc_feature complement(1389595..1390368) /locus_tag="Alide_1315" /note="d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs; Region: HBDH_SDR_c; cd08940" /db_xref="CDD:187644" misc_feature complement(1389595..1390365) /locus_tag="Alide_1315" /note="3-hydroxybutyrate dehydrogenase; Region: PHB_DH; TIGR01963" /db_xref="CDD:162628" misc_feature complement(order(1389796..1389807,1389811..1389822, 1389898..1389900,1389910..1389912,1389949..1389957, 1390036..1390038,1390099..1390107,1390183..1390191, 1390267..1390275,1390327..1390338,1390342..1390344)) /locus_tag="Alide_1315" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187644" misc_feature complement(order(1389595..1389600,1389607..1389624, 1389628..1389645,1389649..1389651,1389664..1389666, 1389673..1389678,1389685..1389687,1389697..1389705, 1389709..1389714,1389850..1389855,1389859..1389864, 1389868..1389876,1389880..1389885,1389892..1389897, 1389904..1389909,1389916..1389939,1389985..1389987, 1389994..1389999,1390006..1390011,1390015..1390020, 1390027..1390032,1390042..1390044,1390054..1390056, 1390063..1390065,1390069..1390071,1390075..1390086, 1390162..1390164)) /locus_tag="Alide_1315" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187644" misc_feature complement(order(1389859..1389864,1389868..1389876, 1389880..1389885,1389892..1389897,1389904..1389909, 1389916..1389933,1389937..1389939,1389985..1389987, 1389994..1389999,1390006..1390011,1390015..1390020, 1390027..1390029,1390042..1390044,1390054..1390056, 1390063..1390065,1390069..1390071,1390075..1390086, 1390162..1390164)) /locus_tag="Alide_1315" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187644" misc_feature complement(order(1389604..1389606,1389787..1389789, 1389799..1389801,1389814..1389819,1389910..1389912, 1389919..1389921,1389943..1389945,1389949..1389951, 1390093..1390095)) /locus_tag="Alide_1315" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187644" misc_feature complement(order(1389898..1389900,1389910..1389912, 1389949..1389951,1390033..1390035)) /locus_tag="Alide_1315" /note="active site" /db_xref="CDD:187644" gene 1390523..1391386 /locus_tag="Alide_1316" /db_xref="GeneID:10103352" CDS 1390523..1391386 /locus_tag="Alide_1316" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_3150 alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004125965.1" /db_xref="GI:319762028" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10103352" /translation="MAYWEWNDTGDPRHPHVIVCAHGLSRQGRDFDTLARRLCRHARV VCPDVAGRGRSDWLTDPMDYQLPVYVADMLALLAQLHQQAPIATLDWVGTSMGGLLGM GICGVPDLPLPAPVRRLVLNDVGPCLEWQALQRIGQYLGQPAHFDSLQQAADALWVVS STFGPHTPQEWLELSRAMVRPAPQGGFVLHYDPAIAVAFRALTPEAASAGEQQMWQLY DRIAAQVLLLRGTQSDLLSPQTAQQMTARGPRARLVEFAGVGHAPTLLHDDQVDVVAR FLLDGQGEPAA" misc_feature 1390574..1391335 /locus_tag="Alide_1316" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 1391383..1393629 /locus_tag="Alide_1317" /db_xref="GeneID:10103353" CDS 1391383..1393629 /locus_tag="Alide_1317" /EC_number="2.7.6.5" /inference="protein motif:TFAM:TIGR00691" /note="TIGRFAM: RelA/SpoT family protein; KEGG: ajs:Ajs_3149 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain-containing protein; amino acid-binding ACT domain protein" /codon_start=1 /transl_table=11 /product="rela/spot family protein" /protein_id="YP_004125966.1" /db_xref="GI:319762029" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR004095" /db_xref="InterPro:IPR004811" /db_xref="InterPro:IPR007685" /db_xref="GeneID:10103353" /translation="MKSSFIGQTLPMAQAGAAAARPDGVPQLIAATSQADTEHADALV RARAFAEPLLIGETLETGENTLAHADAVAAILKNLGGSETMQAAAYLVYTCEHLNKPE EVIGKAFGSNFAALAVETTKLMRVQLQAREAQVAGLQVDDAATQTENVRKMLLAFSRD LRVVMLRLASRLQTLRYYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWELEDLAF RFLEPDTYREVARLLDEKRVERELYMEQLRGRLESELRAHSISASVSGRPKHIYSIVK KMRGKSLDFDQVFDIRALRVIVPSVKDCYAALSWVHSQFTSIEAEFDDYIARPKPNGY QSLHTVVRDEAGRAIEIQIRTQAMHDHAEHGVAAHWAYKEAGTKGYAGVSASSDYDAK IAVLRQLLAWERDLVGSASRSGLFEDRIYVLTPDAAVVELPQGATPVDFAYAVHTNVG HRCRGARVDGAMVPLNTPLQNGQTVEISTVKEGRPSRDWLNPELGYLTSSRAKAKVRA WFNAQATHATVARGRELVEKLLQREGKTAIKHDDLAMQLGFKSADALFEMVGKDELSL RSIEALLRPPEPVAQEPDLLVRKARTADGAHKGGVLVVGVDSLMTQLAKCCKPAPPDD IRGFVTRGKGVSVHRSDCRNFHEMAARNAERVIDVQWGRPRRSTAEAAVYPVDVAVEA SDRQGLLRDISEVFAREKTNVIGVQTQSVKGTAWMTFTVEVSDAGRLNKVLGIVAGVQ GVRSARRR" misc_feature 1391458..1393623 /locus_tag="Alide_1317" /note="Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]; Region: SpoT; COG0317" /db_xref="CDD:30665" misc_feature 1392115..1392471 /locus_tag="Alide_1317" /note="Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399" /db_xref="CDD:143389" misc_feature order(1392181..1392183,1392187..1392189,1392250..1392255, 1392265..1392267,1392349..1392351,1392355..1392357, 1392370..1392372,1392376..1392378,1392382..1392384, 1392394..1392396,1392430..1392432,1392436..1392438, 1392442..1392444,1392466..1392471) /locus_tag="Alide_1317" /note="synthetase active site [active]" /db_xref="CDD:143389" misc_feature order(1392181..1392183,1392349..1392351,1392355..1392357, 1392370..1392372,1392376..1392378,1392382..1392384, 1392394..1392396,1392430..1392432,1392436..1392438, 1392466..1392468) /locus_tag="Alide_1317" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143389" misc_feature order(1392250..1392252,1392430..1392432) /locus_tag="Alide_1317" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143389" misc_feature 1392640..1392819 /locus_tag="Alide_1317" /note="TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named...; Region: TGS_RelA_SpoT; cd01668" /db_xref="CDD:133438" misc_feature 1393414..1393623 /locus_tag="Alide_1317" /note="ACT domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876" /db_xref="CDD:153148" gene 1393688..1393764 /locus_tag="Alide_R0014" /note="tRNA-Val1" /db_xref="GeneID:10103354" tRNA 1393688..1393764 /locus_tag="Alide_R0014" /product="tRNA-Val" /db_xref="GeneID:10103354" gene 1394168..1394383 /locus_tag="Alide_1318" /db_xref="GeneID:10103355" CDS 1394168..1394383 /locus_tag="Alide_1318" /inference="similar to AA sequence:KEGG:Dtpsy_2387" /note="KEGG: dia:Dtpsy_2387 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125967.1" /db_xref="GI:319762030" /db_xref="GeneID:10103355" /translation="MLEKQNAECVGNYVVTPLIKSTNAGVAASVSIRRGMYDRIFRFA PHFACDAQAVQYALAQGRSMVLQGQLG" gene 1394448..1394756 /locus_tag="Alide_1319" /db_xref="GeneID:10103356" CDS 1394448..1394756 /locus_tag="Alide_1319" /inference="protein motif:PFAM:PF00076" /note="KEGG: dia:Dtpsy_2389 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein" /codon_start=1 /transl_table=11 /product="rnp-1 like RNA-binding protein" /protein_id="YP_004125968.1" /db_xref="GI:319762031" /db_xref="GO:0003676" /db_xref="InterPro:IPR000504" /db_xref="GeneID:10103356" /translation="MNNRLYVGNLAYSVRDESLVQQFSQFGAVTSAKVMMERDTGRSK GFGFVEMASGAEAQEAINGLHGKSVDGRALTVNVARPMEARPSFGGGADRGGYRGSRY " misc_feature 1394457..1394678 /locus_tag="Alide_1319" /note="RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA...; Region: RRM; cd00590" /db_xref="CDD:100104" misc_feature order(1394463..1394465,1394583..1394585,1394589..1394591) /locus_tag="Alide_1319" /note="RNA/DNA binding site [nucleotide binding]; other site" /db_xref="CDD:100104" misc_feature 1394673..1394678 /locus_tag="Alide_1319" /note="RRM dimerization site [polypeptide binding]; other site" /db_xref="CDD:100104" gene 1394949..1395488 /locus_tag="Alide_1320" /db_xref="GeneID:10103357" CDS 1394949..1395488 /locus_tag="Alide_1320" /inference="protein motif:TFAM:TIGR01848" /note="KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein" /codon_start=1 /transl_table=11 /product="polyhydroxyalkanoate synthesis repressor phar" /protein_id="YP_004125969.1" /db_xref="GI:319762032" /db_xref="InterPro:IPR007897" /db_xref="InterPro:IPR010134" /db_xref="InterPro:IPR012909" /db_xref="GeneID:10103357" /translation="MPDQNPAPDAKPAQRVIKKYPNRRLYDTSTSTYVTLAEVRQLVM NGETVAVRDAKSGEDLTRSILLQIILEEEAGGAPMFSEAALANIIRFYGHAMQGFMGA YLEKNVQMFTEIQAKLAEQSQGLTPEMWSQFMNLQSPMMKGLMGNYVEQSQNMFQQMQ EQMQKQTEQMLGAFGLKKR" misc_feature 1394991..1395311 /locus_tag="Alide_1320" /note="polyhydroxyalkanoate synthesis repressor PhaR; Region: PHA_reg_PhaR; TIGR01848" /db_xref="CDD:130907" misc_feature 1394991..1395182 /locus_tag="Alide_1320" /note="PHB/PHA accumulation regulator DNA-binding domain; Region: PHB_acc_N; pfam07879" /db_xref="CDD:149123" misc_feature 1395186..1395308 /locus_tag="Alide_1320" /note="PHB accumulation regulatory domain; Region: PHB_acc; pfam05233" /db_xref="CDD:147436" misc_feature 1395321..>1395395 /locus_tag="Alide_1320" /note="PHB accumulation regulatory domain; Region: PHB_acc; pfam05233" /db_xref="CDD:147436" gene 1395526..1396917 /locus_tag="Alide_1321" /db_xref="GeneID:10103358" CDS 1395526..1396917 /locus_tag="Alide_1321" /inference="protein motif:TFAM:TIGR01125" /note="TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: dia:Dtpsy_2494 ribosomal protein S12 methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="miab-like tRNA modifying enzyme ylig" /protein_id="YP_004125970.1" /db_xref="GI:319762033" /db_xref="GO:0003824" /db_xref="GO:0016740" /db_xref="InterPro:IPR002792" /db_xref="InterPro:IPR005839" /db_xref="InterPro:IPR005840" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR013848" /db_xref="InterPro:IPR020612" /db_xref="GeneID:10103358" /translation="MSEALSPTKTPKIGFVSLGCPKNLTDSELILTQLSAEGYETSKT FQGADLVIVNTCGFIDDAVRESLDTIGEALADNGKVIVTGCLGARADDGGGNLVKGVH PNVLAVTGPHAAQEVMEHVHQHLPKPHDPFLDLVPGTFGEAGIKLTPRHYAYLKISEG CNHRCTFCIIPSMRGDLVSRPIGDVLNEARALFEGGVKELLVVSQDTSAYGVDVKYRT GFWDGKPVRTRLLELVQTLGAIARPYGAWVRLHYVYPYPSVDDIIPLMQEGLVLPYLD VPFQHSHPDVLKRMKRPASGEKNLERIQRWREMCPELVVRSTFIAGFPGETEEEFEHL LQFLREAQIDRAGCFAYSNVRGAAANDLPGMLPMELREERRARFMAVAEEVSTARLQR RVGQTLQVLVDKAVGLGKKGGVGRSWADAPEIDGLVHLLPPEKISKTYKVGDFVKVRI VGTQGHDLVGVPV" misc_feature 1395544..1396914 /locus_tag="Alide_1321" /note="ribosomal protein S12 methylthiotransferase; Provisional; Region: rimO; PRK14862" /db_xref="CDD:184864" misc_feature 1395559..>1395783 /locus_tag="Alide_1321" /note="Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919" /db_xref="CDD:189770" misc_feature 1395988..1396635 /locus_tag="Alide_1321" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(1396006..1396008,1396012..1396014,1396018..1396020, 1396024..1396032,1396132..1396134,1396138..1396143, 1396276..1396284,1396357..1396359,1396483..1396485, 1396573..1396578) /locus_tag="Alide_1321" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene complement(1396975..1397334) /locus_tag="Alide_1322" /db_xref="GeneID:10103359" CDS complement(1396975..1397334) /locus_tag="Alide_1322" /EC_number="5.2.1.8" /inference="protein motif:PRIAM:5.2.1.8" /note="KEGG: dia:Dtpsy_2493 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="YP_004125971.1" /db_xref="GI:319762034" /db_xref="InterPro:IPR001179" /db_xref="GeneID:10103359" /translation="MAFITTASGLQYEDTVVGTGAQVARGQSVRVHYTGWLYQDGQQG AKFDSSRDRNDPFEFPLGAGMVIKGWDEGVQGMQIGGQRTLIIPAELGYGARGAGGVI PPNATLKFDVELLAVRG" misc_feature complement(1396990..1397283) /locus_tag="Alide_1322" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587" /db_xref="CDD:187101" gene complement(1397450..1397755) /locus_tag="Alide_1323" /db_xref="GeneID:10103360" CDS complement(1397450..1397755) /locus_tag="Alide_1323" /inference="similar to AA sequence:KEGG:Dtpsy_2492" /note="KEGG: dia:Dtpsy_2492 transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_004125972.1" /db_xref="GI:319762035" /db_xref="GeneID:10103360" /translation="MSSKENAAVFQLFEKLECRYALRVLWALRDGHPQTFRLLQDSVG GITPNTLNTRIKELREAGFLDHGSDGYVVTPVGQDLLKRVSDVQAFANRWAAARVKK" misc_feature complement(1397453..1397701) /locus_tag="Alide_1323" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(1397907..1398836) /locus_tag="Alide_1324" /db_xref="GeneID:10103361" CDS complement(1397907..1398836) /locus_tag="Alide_1324" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_3144 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004125973.1" /db_xref="GI:319762036" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103361" /translation="MRLPDLQSLKLFVAVCEHRSIARAAEREAIVGSAVSKRLAQLED TVGTPLLVRRRHGVAPTPAGETLLEHAREMLASVGRIERDMAAFGAGIRGHVRMLVTA SVMAESLADDVAAFLQDPAHRDIQVSMEERVSPEVVRGVREGSASLGICWDAADLSGL HTRSYRHDHLAIVAHPAHPVARAASVRFADVLEHQFVSMPALSAVQQLLVRAAAVEGK TLEHRVQVSNFDAALRVVRANLAISVIPQEVAQPFAASTGVRVIPLADDWARRRFAIC HRGEAGLSPAARLLVQHLAGRARQHARMEPATF" misc_feature complement(1397928..1398827) /locus_tag="Alide_1324" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1398642..1398821) /locus_tag="Alide_1324" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1397955..1398554) /locus_tag="Alide_1324" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(1398123..1398128,1398132..1398137, 1398153..1398170,1398444..1398464,1398468..1398470, 1398486..1398488,1398495..1398500,1398504..1398509)) /locus_tag="Alide_1324" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 1398945..1399874 /locus_tag="Alide_1325" /db_xref="GeneID:10103362" CDS 1398945..1399874 /locus_tag="Alide_1325" /inference="protein motif:PFAM:PF00682" /note="PFAM: pyruvate carboxyltransferase; KEGG: dia:Dtpsy_2490 pyruvate carboxyltransferase" /codon_start=1 /transl_table=11 /product="pyruvate carboxyltransferase" /protein_id="YP_004125974.1" /db_xref="GI:319762037" /db_xref="GO:0003824" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR002034" /db_xref="GeneID:10103362" /translation="MPPNPDTPRATVREVGLRDGLQSIATIVSTARKIEWLDAAHAAG LREVEVGSFVPVRLLPQLADTAEVLAHALTLPGLMPSVLVPNLKGAERAIACGAPWMI VPLSASHAHSLANLRKTPDEVVADVARMRAARDAAGSRTRIEGGVGTAFGCTIQGEVP EAEVLRLLQALLDAGADRVSLADTVGYADPAGVQRLFEKARALVGEHLAGAHFHDTRG LGLANCYAAWQTGVRRFDACLAGIGGCPHAPGASGNVTTEDLAFMLERMGAATGLNVP ALLALRRRVEGWLAGETLHGTLWRAGLPRLAAA" misc_feature 1398978..1399805 /locus_tag="Alide_1325" /note="3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; Region: DRE_TIM_HMGL; cd07938" /db_xref="CDD:163676" misc_feature order(1398996..1399001,1399008..1399010,1399098..1399100, 1399104..1399106,1399254..1399256,1399578..1399580, 1399584..1399586,1399704..1399706) /locus_tag="Alide_1325" /note="active site" /db_xref="CDD:163676" misc_feature order(1398996..1399001,1399089..1399091) /locus_tag="Alide_1325" /note="catalytic residues [active]" /db_xref="CDD:163676" misc_feature order(1398999..1399001,1399578..1399580,1399584..1399586, 1399704..1399706) /locus_tag="Alide_1325" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163676" gene 1399905..1401098 /locus_tag="Alide_1326" /db_xref="GeneID:10103363" CDS 1399905..1401098 /locus_tag="Alide_1326" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3142 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004125975.1" /db_xref="GI:319762038" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10103363" /translation="MNTSSLPLAGIRVVEFTHMVMGPTCGMVLADLGAEVIKVEPVEG DRTRHLLGAGAGFFPMFNRNKKSIAIDLRSPQGLEVAIRLASSADVVAQNFKPGVMAK YGLDYAALSRLNQRLVYVNHTGFLHGPYEHRTALDEVVQMMGGLAYMTGRPGDPLRAG TSVNDIMGGMFGAIGAMAALMQRAQTGRGQEVDSALFENNVFLVGQHMMQYAVTGEPA APMPERISSWAVYDVFSVKDGGQIFLAAVSDAQWQTFCDAMGYADLKADPRYATNNDR VRARPTLLPMLRERLAAHTADALAAVFERHGLPFAPIRRPEELFDDPHLNATGGLADV TLPDGERAGATARTTLLPLRLDGQRMGVRMDPPRLGQHTPELLAGLGYTAEQVEALRG AAAVA" misc_feature 1399905..1401092 /locus_tag="Alide_1326" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1401132..1402133 /locus_tag="Alide_1327" /db_xref="GeneID:10103364" CDS 1401132..1402133 /locus_tag="Alide_1327" /inference="similar to AA sequence:KEGG:Dtpsy_2488" /note="KEGG: dia:Dtpsy_2488 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125976.1" /db_xref="GI:319762039" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103364" /translation="MHTFHSIARHGALVSRRSALAWGVAALGAPALALAQGEGRPLRM ILPVSAGSGADGAMRAISNSLAKALGQPVVIENLPGAGGITGTAQIVRAPRDGSVIGV VSNNHVVNPAVYRNIPFDSLADITPITVVGTTPFVLVAHPSVPARTVQELVAYAKAHP GVLNYGSSGNGTILHLGAAMFVDQAGLDIRHIPYRGMGPLMNDILGGQVQLGVVAVAP AAGHIKSGALRALGVTSAARVASLPQVPTIAEQGLPGYELDGWIAAIGPAGLPRAEVY RIYQGFQRALQMPEARDALVAQGYVIRLPPPEEAAAFFRSETARMAQAVKSANVKMD" sig_peptide 1401132..1401239 /locus_tag="Alide_1327" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.873 at residue 36" misc_feature 1401249..1402127 /locus_tag="Alide_1327" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1401306..1402118 /locus_tag="Alide_1327" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1402207..1403157) /locus_tag="Alide_1328" /db_xref="GeneID:10103365" CDS complement(1402207..1403157) /locus_tag="Alide_1328" /EC_number="1.1.1.169" /inference="protein motif:TFAM:TIGR00745" /note="TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: ajs:Ajs_3139 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="YP_004125977.1" /db_xref="GI:319762040" /db_xref="GO:0016491" /db_xref="InterPro:IPR003710" /db_xref="InterPro:IPR013332" /db_xref="InterPro:IPR013752" /db_xref="GeneID:10103365" /translation="MHPTTEPHTPPHPGRLRFAVMGAGAVGCYFGALLARAGHAVTLI GRPAHVQAIQARGLRLQTAAQDEHVAMGASTDAGAVAGADVVLLCVKSTDTEAAARQI QPHLAPGALVLTLQNGVDNDERVRAVLGPAQPVAAAVVYVATAMAGPGHVRHFGRGEL VLAPSLIAERLVRELGAAGIPAQVSDNVRGALWSKLVINCAYNALSAIVQRPYGWLAR QDGATEVIADLVAECLAVAQADGVRIAGDIHAAVRGIVQSMPGQRSSTAQDLARGRPT EIEHLNGYVVQRGKALGVATPVNHALLVLVRMAEAARTEV" misc_feature complement(1402210..1403109) /locus_tag="Alide_1328" /note="2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522" /db_xref="CDD:180603" misc_feature complement(1402666..1403106) /locus_tag="Alide_1328" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1402228..1402599) /locus_tag="Alide_1328" /note="Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546" /db_xref="CDD:192064" gene complement(1403204..1403887) /locus_tag="Alide_1329" /db_xref="GeneID:10103366" CDS complement(1403204..1403887) /locus_tag="Alide_1329" /inference="protein motif:PFAM:PF03352" /note="PFAM: methyladenine glycosylase; KEGG: neu:NE0447 hypothetical protein" /codon_start=1 /transl_table=11 /product="methyladenine glycosylase" /protein_id="YP_004125978.1" /db_xref="GI:319762041" /db_xref="GO:0008725" /db_xref="InterPro:IPR005019" /db_xref="GeneID:10103366" /translation="MTLEYRWLYDTVRKRFESDEAMEAFLPTALTPQELKQKGDDRYL SAMSQRVFQAGMQHSMVDAKWPEFEKAFSGFAPGQMALLGPQQIEDHMKNDRIIRDRT KLQTIPKNARFILDIRQERGCGFGEFIAGWPGADTVGLWRLLAQRGARLGGRSAAGFL RLAGKDTFLLTSDVVARLMAAGIIDHAPTSQRDMQIVQDAFNRLQQDSGRLLCQLSAM LSLSINPGF" misc_feature complement(<1403501..1403779) /locus_tag="Alide_1329" /note="Methyladenine glycosylase; Region: Adenine_glyco; cl01059" /db_xref="CDD:194022" gene complement(1403919..1404026) /locus_tag="Alide_1330" /db_xref="GeneID:10103367" CDS complement(1403919..1404026) /locus_tag="Alide_1330" /inference="similar to AA sequence:KEGG:NGR_b07690" /note="KEGG: rhi:NGR_b07690 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125979.1" /db_xref="GI:319762042" /db_xref="GeneID:10103367" /translation="MPKFITIGYGDQEGYDLTPEPLRNAAHANSRMAGP" gene complement(1404153..1406561) /locus_tag="Alide_1331" /db_xref="GeneID:10103368" CDS complement(1404153..1406561) /locus_tag="Alide_1331" /inference="protein motif:TFAM:TIGR02393" /note="KEGG: dia:Dtpsy_2485 RNA polymerase, sigma 70 subunit, RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor rpod" /protein_id="YP_004125980.1" /db_xref="GI:319762043" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0016987" /db_xref="InterPro:IPR000943" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR007127" /db_xref="InterPro:IPR007624" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR007631" /db_xref="InterPro:IPR009042" /db_xref="InterPro:IPR012760" /db_xref="InterPro:IPR014284" /db_xref="GeneID:10103368" /translation="MPVQKSAKSPKPASGTAAKAASKAATPVKTAAKAPAKAATAKAA DAALQAATKVKTVPTPKTTAELTKAADELLKKKPARAPKAAAAQAEASEDAPKKKPGR PAKAAGSATAAAKAPAKRGRKPKAKEEGLEDDADLSDIEAELEGEPEAPEAEAEAAPA EKAKPLRMKISKAKERALMKEFGLDETVLSEEDMAKRRSQLKKLITLGKTRGYLTQVE ISDHLPDKLVDAETMEVVVAMLGDMGVAVYEQTPDAETLFQNNVAPTATTVEEAEEEA EAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMEAISASP ATIAEILNMGEEIREGKVVISTVVDGFSNPEEADDYVAEEDFDEYDEEDDDDGKGGSK AMTRLLEKLKTEALDRFDELRSLFEKMHKIYDKEGYGSPAYMKVQHEISAKLMTIRFT AKTIEKLCDMVRAQVDDVRKKERELRRIIVDKCGMPQETFSKEFPSNLLNLQWVEKQA AAGKPWSAVMQRNIPPIQELQQHLIDLQSRVVVPLAELKAINKRMNQGEANSRDAKKE MIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR QAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAAKMEIPEDKI RKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNNTAPIDAAMQAGLRDVVKDILDGLT PREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSF IDSL" misc_feature complement(1404159..1405976) /locus_tag="Alide_1331" /note="RNA polymerase sigma factor RpoD; Validated; Region: PRK05658" /db_xref="CDD:180186" misc_feature complement(1405779..1405976) /locus_tag="Alide_1331" /note="Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979" /db_xref="CDD:112778" misc_feature complement(1405593..1405691) /locus_tag="Alide_1331" /note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140" /db_xref="CDD:189414" misc_feature complement(1404954..1405562) /locus_tag="Alide_1331" /note="Sigma-70, non-essential region; Region: Sigma70_ner; pfam04546" /db_xref="CDD:146940" misc_feature complement(1404651..1404863) /locus_tag="Alide_1331" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature complement(1404393..1404626) /locus_tag="Alide_1331" /note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539" /db_xref="CDD:146934" misc_feature complement(1404201..1404377) /locus_tag="Alide_1331" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature complement(order(1404213..1404215,1404219..1404224, 1404228..1404236,1404240..1404245,1404249..1404251, 1404279..1404284,1404312..1404314,1404342..1404344)) /locus_tag="Alide_1331" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene complement(1406820..1408745) /locus_tag="Alide_1332" /db_xref="GeneID:10103369" CDS complement(1406820..1408745) /locus_tag="Alide_1332" /inference="protein motif:TFAM:TIGR01391" /note="TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; DNA primase, DnaB-helicase binding domain; KEGG: ajs:Ajs_3137 DNA primase; SMART: Toprim sub domain-containing protein" /codon_start=1 /transl_table=11 /product="DNA primase" /protein_id="YP_004125981.1" /db_xref="GI:319762044" /db_xref="GO:0003896" /db_xref="InterPro:IPR002694" /db_xref="InterPro:IPR006154" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR006295" /db_xref="InterPro:IPR013264" /db_xref="InterPro:IPR019475" /db_xref="GeneID:10103369" /translation="MSIPQSFIQELLARVDVVDIVGRYVQLKKSGANFMGLCPFHGEK SPSFSVSPSKQFFHCFGCGKNGNAIGFLMDHAGMGFREAVQDLAQQVGMQVPDDENTS PQDRERAAAQRQKQATLTEVLEKAGESWRRHLRESPRAIQYFKGRGVSGQVAKRYGLG YAPEGWRNLASVFPEYDSPLLEESGLVIVGEDDGKRYDRFRDRVMFPIRNVKGECIGY GGRVLGDDKPKYLNSPETPVFHKGRELYGLYEARGAIREMGYVLVAEGYMDVVALAQL GFPNAVATLGTACTPDHVHKLFRFTDVVVFSFDGDAAGRRAARKALDGALPYASDTRS IKFLFLPPEHDPDSFIRAHGPEAFARHVGDAMPLSRFLLESAREGCDLGTAEGRAHML ANARPLWSQLPDGALKRQMLAELGELGQLPAKDLAELWAQEGPRAAPAAAPEGGDPFA DEPPWHPQPPGPWQGEPARRPWRKDAGGRWRREPARPAQPPLPRRPAASRIDHAARLL LSHMQFLEGLSHEDHAALCAQPEPHGPLFAWLEGQLHEHGPQPWAVLREALRGHDCEP LAERVMTGSHAQTEGDEAELHAELRGLLDRMLIEEFKRQQQELVPRVTRDPAALAQYQ ALEQRLKGLLGISPRPT" misc_feature complement(1407492..1408742) /locus_tag="Alide_1332" /note="DNA primase, catalytic core; Region: dnaG; TIGR01391" /db_xref="CDD:162334" misc_feature complement(1408446..1408739) /locus_tag="Alide_1332" /note="CHC2 zinc finger; Region: zf-CHC2; cl02597" /db_xref="CDD:141551" misc_feature complement(1407990..1408340) /locus_tag="Alide_1332" /note="DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275" /db_xref="CDD:191985" misc_feature complement(<1407822..1407965) /locus_tag="Alide_1332" /note="TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364" /db_xref="CDD:173784" misc_feature complement(order(1407939..1407941,1407948..1407953)) /locus_tag="Alide_1332" /note="active site" /db_xref="CDD:173784" misc_feature complement(1407951..1407953) /locus_tag="Alide_1332" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173784" misc_feature complement(order(1407891..1407893,1407921..1407926, 1407942..1407947)) /locus_tag="Alide_1332" /note="interdomain interaction site; other site" /db_xref="CDD:173784" misc_feature complement(1407492..1407644) /locus_tag="Alide_1332" /note="DnaB-helicase binding domain of primase; Region: DnaB_bind; pfam10410" /db_xref="CDD:192576" misc_feature complement(1406919..>1407236) /locus_tag="Alide_1332" /note="DNA primase; Validated; Region: dnaG; PRK05667" /db_xref="CDD:180189" gene 1409085..1410731 /locus_tag="Alide_1333" /db_xref="GeneID:10103370" CDS 1409085..1410731 /locus_tag="Alide_1333" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_2483 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004125982.1" /db_xref="GI:319762045" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10103370" /translation="MTSMYDQNLPRNEANHAPLSPLSFIERTAEVYPDRLAIVHGGLR QTWGQTYARCRRLASSLRAAGIGKNDTVAVMLPNTPPMVEAHFGVPMAGAVLNALNTR LDPETIAFMLDHGEARAVIVDPEFAPVMARALALRQSKAPLLLIDVEDAVYGAAAERL GTQTYEEFLAAGDPQFAWELPGDEWDAIALNYTSGTTGNPKGVVYHHRGAAINAISNV LEWDMPKHSVYLWTLPMFHCNGWCFPWTVAARAGVNVCLRRVEAQAIFDAMRSHGVTH YCGAPIVHGLLVNAPAAMKEGVPAGVKAMVAGAAPPASMIEGMEKLGFDLTHVYGLTE VYGPATVCARHDAWNALDVGERARLNARQGVRYHLQRAAAVLDPETMQPVPRDGETMG EIMFRGNIAMKGYLKNPAATGDAFRGGWFHSGDLAVQYLDGYIKIKDRSKDIIISGGE NISSIEVEDVLYRHPDVLAAAVVAKPDPKWGETPCAFVELKAGAQATPEDIVAHCKKH LAGFKVPRAMVFGELPKTSTGKIQKFELRRQAGSAAAINV" misc_feature 1409088..1410728 /locus_tag="Alide_1333" /note="acyl-CoA synthetase; Validated; Region: PRK08162" /db_xref="CDD:181261" misc_feature 1409277..1410701 /locus_tag="Alide_1333" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(1410788..1412350) /locus_tag="Alide_1334" /db_xref="GeneID:10103371" CDS complement(1410788..1412350) /locus_tag="Alide_1334" /inference="protein motif:PFAM:PF00614" /note="KEGG: maq:Maqu_3283 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase" /codon_start=1 /transl_table=11 /product="phospholipase d/transphosphatidylase" /protein_id="YP_004125983.1" /db_xref="GI:319762046" /db_xref="GO:0003824" /db_xref="InterPro:IPR001736" /db_xref="GeneID:10103371" /translation="MTRPAALARRLPALLAGLMLAGCSLPPLAGRSTSAALELPAARD TQLGRALGPELAAHPGLSGIHALDHPHDAFAARVLLARAAERTLDVQYYIWRGDTTGT LLLAELLAAAERGVRVRLLLDDLGTAGLDGPLAAMNGHPRIEVRLFNPFTWRNPKPLG YLADLRRANRRMHNKSFTVDNQASIVGGRNVGDEYFGATSGVLFADLDVLAVGPVVQD VSDDFDRYWASASAYPAERILPAVAPQAVAKLAAQARALQESPRARDYARAIAGSPFI RQLLGHSLPLHWARVQMLSDDPAKGMGQARRADLLLPRLGAVLGAPRRSVDLVSPYFV PTAHGVEAFARLRQAGVRVRVLTNAFEATDVPAVHAGYAKYRKRLLEQGVALYEMRSL VPEYAADKGRPLLQRLGSSGSSLHAKTFAVDGERVFVGSLNFDPRSALFNTELGFLID SPALAQQVALAFDREIPLQSYRVALAEDGTLRWHGGVGNPAPVYGTEPRTTWWSRSLV WLLMRLPIEWFL" sig_peptide complement(1412261..1412350) /locus_tag="Alide_1334" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.863) with cleavage site probability 0.650 at residue 30" misc_feature complement(1411667..1412086) /locus_tag="Alide_1334" /note="Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111" /db_xref="CDD:197210" misc_feature complement(order(1411733..1411735,1411781..1411783, 1411787..1411789,1411826..1411828,1411832..1411834)) /locus_tag="Alide_1334" /note="putative active site [active]" /db_xref="CDD:197210" misc_feature complement(1411832..1411834) /locus_tag="Alide_1334" /note="catalytic site [active]" /db_xref="CDD:197210" misc_feature complement(1410803..1411471) /locus_tag="Alide_1334" /note="Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_2; cd09113" /db_xref="CDD:197212" misc_feature complement(order(1411019..1411021,1411052..1411054, 1411058..1411060,1411097..1411099,1411103..1411105)) /locus_tag="Alide_1334" /note="putative active site [active]" /db_xref="CDD:197212" misc_feature complement(1411103..1411105) /locus_tag="Alide_1334" /note="catalytic site [active]" /db_xref="CDD:197212" gene complement(1412347..1413486) /locus_tag="Alide_1335" /db_xref="GeneID:10103372" CDS complement(1412347..1413486) /locus_tag="Alide_1335" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; KEGG: ajs:Ajs_3130 molybdate metabolism transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein lysr" /protein_id="YP_004125984.1" /db_xref="GI:319762047" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="GeneID:10103372" /translation="MHRIQLHYTLDRDAGDALIRNPLLDMLQAVAQQGSISGAARALG LSYRHVWGALKRWEEQLGSELIVWGKGQSAQLSEFGAKLLWAERQAQARLAPQIEALH ADLERAFAVAFDDHAHVLTLYASHDDALSVLRAFAAVPGHAGQGRALHLDIRFTGSVD AIRALNEGRCTIAGFHTLEQPAMDSLAAQTYRPLLQPGLHKVIGFARRTQGLIVARGN PLGLASLADVARTGARFVNRPLGTGTRVLLADLMAQAGLESGDIDGYGRDEPSHAALA QAIAAGSADVGMGIELAARARGLDFVPLVHERYHLACLKSTLEQPATRALRDLLQTPA WQRRMAAMPGYAPMHCGEVLAMSRVLPWWRFARRKSAGAHQHASP" misc_feature complement(1413172..1413447) /locus_tag="Alide_1335" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1412494..1413060) /locus_tag="Alide_1335" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1413537..1414271 /locus_tag="Alide_1336" /db_xref="GeneID:10103373" CDS 1413537..1414271 /locus_tag="Alide_1336" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3129 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004125985.1" /db_xref="GI:319762048" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103373" /translation="MSAISQSVATALNLVTSADAVLWTIVARSLSVSATACALACGAG VVLGAWLGVARFAGRDGVLTVLNTLLAVPSVVVGLGVYLLLSRTGPLGGLGWLFSFKA MVLAQALLVLPVVTALTRQVVEDAERVHGEQLRSLGAGTLLRALLIAWDERYALLTVL IAAFGRAVSEVGAVMIVGGNIDGFTRVMTTAIALETSKGDLPLALGLGLVLLAVVLLL NVLIAVLRRWRQRVDGAAIGGMAVAA" misc_feature 1413546..1414130 /locus_tag="Alide_1336" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 1414268..1415044 /locus_tag="Alide_1337" /db_xref="GeneID:10103374" CDS 1414268..1415044 /locus_tag="Alide_1337" /inference="protein motif:PFAM:PF00005" /note="KEGG: ajs:Ajs_3128 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125986.1" /db_xref="GI:319762049" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR000215" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103374" /translation="MSVVPAPAWRRAAQPQDVQTLEPPLFALRDLGVRYGAVQALAGV NLRVLPGERVALVGANGSGKSTLLRVLHGLVRPSAGQMRRDGTPRVAMVFQRPFVLRA SAVSNVALGLWLRGVRWKQARAQAAAALQRVGLQDVVRRNARTLSGGQQQRLAFARAW ALRPDVLLLDEPTASLDPHAKREVEALMADFAASHGSAGPAQPLTMVFSSHNLGQVKR LASRVVYLEHGRVLADLPVHDFFNGPLPEAARLFVKGEMT" misc_feature 1414337..1415029 /locus_tag="Alide_1337" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature 1414343..1414987 /locus_tag="Alide_1337" /note="Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein...; Region: ABC_PstB_phosphate_transporter; cd03260" /db_xref="CDD:73019" misc_feature 1414439..1414462 /locus_tag="Alide_1337" /note="Walker A/P-loop; other site" /db_xref="CDD:73019" misc_feature order(1414448..1414453,1414457..1414465,1414550..1414552, 1414775..1414780,1414898..1414900) /locus_tag="Alide_1337" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73019" misc_feature 1414541..1414552 /locus_tag="Alide_1337" /note="Q-loop/lid; other site" /db_xref="CDD:73019" misc_feature 1414703..1414732 /locus_tag="Alide_1337" /note="ABC transporter signature motif; other site" /db_xref="CDD:73019" misc_feature 1414763..1414780 /locus_tag="Alide_1337" /note="Walker B; other site" /db_xref="CDD:73019" misc_feature 1414787..1414798 /locus_tag="Alide_1337" /note="D-loop; other site" /db_xref="CDD:73019" misc_feature 1414886..1414906 /locus_tag="Alide_1337" /note="H-loop/switch region; other site" /db_xref="CDD:73019" gene 1415041..1415868 /locus_tag="Alide_1338" /db_xref="GeneID:10103375" CDS 1415041..1415868 /locus_tag="Alide_1338" /inference="protein motif:PFAM:PF01547" /note="PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_3127 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_004125987.1" /db_xref="GI:319762050" /db_xref="GO:0005215" /db_xref="InterPro:IPR006059" /db_xref="GeneID:10103375" /translation="MMRLKRFRPVAITQTAVAAICLIAFGSAAAQVITMASTTSTEQS GLFSHLLPAFKQATGIDVKVVAVGTGQALDMARRGDADVLFVHDQAAEEKFVADGWGV KRYPVMYNDFILVGGKGDPAGVRGNDIVAALKKIAAANAEFISRGDKSGTHAAELRYW KIASPDAKGSGYKECGCGMGPALNIAAASGAYVLSDRGTWLNFKNRDSLAVLVEGDKR LFNQYGVMVVNPAKHPHVKQAEAQKFVDWVTSPAGQGTIAAYKINGEQLFFPNAGSN" sig_peptide 1415041..1415133 /locus_tag="Alide_1338" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.879 at residue 31" misc_feature 1415044..1415859 /locus_tag="Alide_1338" /note="ABC-type tungstate transport system, permease component [Coenzyme metabolism]; Region: TupB; COG2998" /db_xref="CDD:32816" misc_feature 1415110..1415793 /locus_tag="Alide_1338" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1415889..1416818) /locus_tag="Alide_1339" /db_xref="GeneID:10103376" CDS complement(1415889..1416818) /locus_tag="Alide_1339" /inference="similar to AA sequence:KEGG:Pnap_0462" /note="KEGG: pna:Pnap_0462 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004125988.1" /db_xref="GI:319762051" /db_xref="GeneID:10103376" /translation="MNTTTNGAAAEPAAPAEESGEPGRPKPQETTGLDKFQLVLATRP VLRNAALVFCVCLFPVAMALTWFAWFLWLPKVWDWSFAEFTLRSVPGFFGVFFIAFLP IYALIGAFIATAYVVEVYTDEATKKVRLVLERGSSLQSNAEDELAKQDQSGLVPLLRY SRVQLESYYAIGLTQTQRSFRYSIIAMWIGFAVILGGIIIRVVDLDRFGLRPLDTDIS TLIIISGAIIEVISALFLWVYRSSVRQLTYFYNRQLYNHSILMSQRIAETMTSADEIK KTIIEKLLDRSWAYEPDTLPSGQSLLSFRSPKG" gene complement(1416933..1418009) /locus_tag="Alide_1340" /db_xref="GeneID:10103377" CDS complement(1416933..1418009) /locus_tag="Alide_1340" /inference="protein motif:TFAM:TIGR02142" /note="TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain-containing protein; KEGG: ajs:Ajs_3126 molybdate ABC transporter, ATPase subunit; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="molybdate abc transporter, atpase subunit" /protein_id="YP_004125989.1" /db_xref="GI:319762052" /db_xref="GO:0005524" /db_xref="GO:0015098" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005116" /db_xref="InterPro:IPR011868" /db_xref="InterPro:IPR015852" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103377" /translation="MSGIHARLLVSRPDFTLDVDLRLPGTGVTALFGPSGCGKTTCLR AVAGLERTEGRVQVNGETWQDSAAGQWLPTHRRALGYVFQEASLFPHLDVRRNMEYGL RRQPPARRHVSLEQAVELLGLGALLSRMPHTLSGGERQRVAIARALAASPRVLLMDEP LAALDAARKAEVMPYLERLQRGLDIPVLYVSHSPDEVARLASHLVLLENGRVVEQGTP ATLMARLDLPFAHGDAAAALVEARVTAHDARDHLLTAQFGGGLLRLVSTRARAVGERV RLRIPARDVSIALAQAQGSSILNLLPARITTLADDSPGQVLVRLDAGGTVLLARITRH SCTELALAEGQTVWAQVKGVALVD" misc_feature complement(1417362..1418003) /locus_tag="Alide_1340" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1416942..1418000) /locus_tag="Alide_1340" /note="molybdenum ABC transporter, ATP-binding protein; Region: modC_ABC; TIGR02142" /db_xref="CDD:131197" misc_feature complement(1417890..1417913) /locus_tag="Alide_1340" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1417434..1417436,1417533..1417538, 1417758..1417760,1417887..1417895,1417899..1417904)) /locus_tag="Alide_1340" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1417758..1417769) /locus_tag="Alide_1340" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1417581..1417610) /locus_tag="Alide_1340" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1417533..1417550) /locus_tag="Alide_1340" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1417515..1417526) /locus_tag="Alide_1340" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1417428..1417448) /locus_tag="Alide_1340" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature complement(1416942..1417127) /locus_tag="Alide_1340" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene complement(1418006..1418689) /locus_tag="Alide_1341" /db_xref="GeneID:10103378" CDS complement(1418006..1418689) /locus_tag="Alide_1341" /inference="protein motif:TFAM:TIGR02141" /note="KEGG: ajs:Ajs_3125 molybdate ABC transporter, inner membrane subunit; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="molybdate abc transporter, inner membrane subunit" /protein_id="YP_004125990.1" /db_xref="GI:319762053" /db_xref="GO:0015098" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR011867" /db_xref="GeneID:10103378" /translation="MIPSFLSPEDWAAITLTLELAGTTTVLLLALCTPLAWWLAHTRS RWRGPVGAVVALPLVLPPTVIGFYLLVTMGPNGPIGHLTESLGLGRLPFTFPGLVIGS IVYSLPFAVQPLQRAFEALGRRPLEVAATLGAGPLDRFFTVALPLARPGFVTAAILSF AHTVGEFGVVLMLGGNIPGVTRVVSVQIYDHVEAMEYAQAHWLAGGMVAFSFVVLMLL HWLQPKGAR" misc_feature complement(1418054..>1418434) /locus_tag="Alide_1341" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1418102..1418104,1418132..1418134, 1418141..1418143,1418177..1418179,1418393..1418395)) /locus_tag="Alide_1341" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1418054..1418059,1418066..1418071, 1418078..1418083,1418087..1418092,1418099..1418104, 1418132..1418137,1418174..1418179,1418186..1418197, 1418216..1418218,1418225..1418230,1418270..1418272, 1418321..1418323,1418330..1418335,1418345..1418347, 1418351..1418356,1418363..1418365,1418369..1418371, 1418375..1418380)) /locus_tag="Alide_1341" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1418249..1418251,1418261..1418266, 1418282..1418320)) /locus_tag="Alide_1341" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1418783..1419547) /locus_tag="Alide_1342" /db_xref="GeneID:10103379" CDS complement(1418783..1419547) /locus_tag="Alide_1342" /inference="protein motif:TFAM:TIGR01256" /note="KEGG: dia:Dtpsy_2470 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1" /codon_start=1 /transl_table=11 /product="molybdenum abc transporter, periplasmic molybdate-binding protein" /protein_id="YP_004125991.1" /db_xref="GI:319762054" /db_xref="GO:0015412" /db_xref="InterPro:IPR005950" /db_xref="InterPro:IPR006059" /db_xref="GeneID:10103379" /translation="MNRPPLLHRTLSALGLAALMLPGAHAGEVSVAVAANFTAPMQKI AAQFEQDTGHKAVLSFGATGKFYAQIKNGAPFGILLAADDSTPEKIAREGLGEGATRF TYAIGQLVLWSKQPGYVDAEGKVLQKTDWQHIAIANPKLAPYGLAAMQTLDKLGLTAQ VQPRVVTGENIGQTYQFAASGNAQLGFVALSQVTEDGKLREGSAWVVPGNLHEPIRQD AIVLKPGQGNAAAAALMDYLRGAKARAVIKSYGYSF" sig_peptide complement(1419467..1419547) /locus_tag="Alide_1342" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 27" misc_feature complement(1418795..1419448) /locus_tag="Alide_1342" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1419614..1420405 /locus_tag="Alide_1343" /db_xref="GeneID:10103380" CDS 1419614..1420405 /locus_tag="Alide_1343" /inference="protein motif:PFAM:PF03459" /note="PFAM: TOBE domain-containing protein; regulatory protein LysR; KEGG: dia:Dtpsy_2469 transcriptional regulator, ModE family" /codon_start=1 /transl_table=11 /product="tobe domain-containing protein" /protein_id="YP_004125992.1" /db_xref="GI:319762055" /db_xref="GO:0003700" /db_xref="GO:0005215" /db_xref="GO:0005524" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005116" /db_xref="InterPro:IPR016462" /db_xref="GeneID:10103380" /translation="MMHLMQSPVSFKDALGHGMADKRIDILRQIGQGGSISQAARAVG VSYKAAWQALDTLTNLAGVALVERVVGGVGGGGARLTPAGRQLLATADAVQQARSAVL VGLGEGGEGGDADAAVARLSVRTSMRNQWPCTVQAMESRGQIVRVHLRGAGGAVAGLA VCSRITRESAELLGLRPGLPVQALCKATAVHVLPLAAAGAAQDGNRWPGRAVRVSRGE LGDEVAAQLDAGVQMVGFAAAGSGLRARSRVVLAAEESAIVLAVV" misc_feature 1419644..>1419790 /locus_tag="Alide_1343" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1419980..1420195 /locus_tag="Alide_1343" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene 1420568..1421338 /locus_tag="Alide_1344" /db_xref="GeneID:10103381" CDS 1420568..1421338 /locus_tag="Alide_1344" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_2468 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125993.1" /db_xref="GI:319762056" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10103381" /translation="MSDVILKTSHLTKEFKGFTAVSDVNLSVRRGSIHALIGPNGAGK TTCFNLLTKFLVPTSGTIHFNGHDITHEQPAQIARRGVIRSFQISAVFPHLTLMENVR LGLQRKLGTSYHFWRSQSSLNQLNGRALELLAEVGLEDLADEVTVNLPYGRKRALEIA TTLAMEPELMLLDEPTQGMGHEDVDRVTQLIKKVSAGRTILMVEHNMKVIATIADCIT VLQRGAVLAEGPYEEVSKNPQVMEAYMGTTDGQLQGAH" misc_feature 1420571..1421308 /locus_tag="Alide_1344" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 1420583..1421287 /locus_tag="Alide_1344" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 1420679..1420702 /locus_tag="Alide_1344" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(1420688..1420693,1420697..1420705,1420826..1420828, 1421084..1421089,1421180..1421182) /locus_tag="Alide_1344" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 1420817..1420828 /locus_tag="Alide_1344" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 1421012..1421041 /locus_tag="Alide_1344" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 1421072..1421089 /locus_tag="Alide_1344" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 1421096..1421107 /locus_tag="Alide_1344" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 1421168..1421188 /locus_tag="Alide_1344" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 1421340..1422050 /locus_tag="Alide_1345" /db_xref="GeneID:10103382" CDS 1421340..1422050 /locus_tag="Alide_1345" /inference="protein motif:PFAM:PF00005" /note="KEGG: ajs:Ajs_3121 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004125994.1" /db_xref="GI:319762057" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103382" /translation="MATPALEIRNLQAWYGESHVLHGVDMLVQPGEVVTLLGRNGAGR TSTLRAIMGLTGARKGSIRINGQETIAMPTHRIAHLGVGYCPEERGIFSSLSCEENLL LPPVLKTGTQGMPIDEIYAMFPNLAERKNSQGTRLSGGEQQMLAVARILRTGAKLLLL DEISEGLAPVIVQALARMIVMLREKGYTVVMVEQNFRFAAPLADRFYVMEHGRIALEF GAAELEARMPVLNQLLGV" misc_feature 1421346..1422047 /locus_tag="Alide_1345" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 1421355..1422014 /locus_tag="Alide_1345" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 1421451..1421474 /locus_tag="Alide_1345" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(1421460..1421465,1421469..1421477,1421598..1421600, 1421820..1421825,1421919..1421921) /locus_tag="Alide_1345" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 1421589..1421600 /locus_tag="Alide_1345" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 1421748..1421777 /locus_tag="Alide_1345" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 1421808..1421825 /locus_tag="Alide_1345" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 1421832..1421843 /locus_tag="Alide_1345" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 1421907..1421927 /locus_tag="Alide_1345" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 1422100..1423302 /locus_tag="Alide_1346" /db_xref="GeneID:10103383" CDS 1422100..1423302 /locus_tag="Alide_1346" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2466 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004125995.1" /db_xref="GI:319762058" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10103383" /translation="MQKTLKTLVTMLGMAGLGLSAMQAHAQDKVKIGFITDMSSLYAD VEGKNGALAIQMAIDDFGGKVLGKPIELLSADHQNKADIAASKAREWIDTQGLTMLFG GTNSGTALAMAKIADEKKRVFLVNGAGSSALTNEQCSPYTVHYAYDTVALAKGTGSAV VKQGGKDWFFLTADYAFGAALEADTAKVVKENGGRVLGSVRHPLNASDFSSFLLQAQN SKAQILGLANAGGDTINAIKAAKEFGITKTMKMAGLLVFITDIHSLGLKNTEGLLLTT SWDWNLNDQTRAFGKKFFAKTKRMPTDIHAADYSATMNYLKAVQAAGTTDADKVMAKL KSTPIDDFYAKGVIRPDGRFVHDMYLMQVKSPAESKEPWDYYKVVAKLPGDQVFTTKA ESKCALWK" sig_peptide 1422100..1422180 /locus_tag="Alide_1346" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 27" misc_feature 1422157..1423230 /locus_tag="Alide_1346" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1422190..1423182 /locus_tag="Alide_1346" /note="Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family; Region: PBP1_SBP_like_1; cd06327" /db_xref="CDD:107322" misc_feature order(1422409..1422417,1422478..1422486,1422628..1422630, 1422784..1422786,1422862..1422864) /locus_tag="Alide_1346" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107322" gene 1423374..1424573 /locus_tag="Alide_1347" /db_xref="GeneID:10103384" CDS 1423374..1424573 /locus_tag="Alide_1347" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3119 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004125996.1" /db_xref="GI:319762059" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10103384" /translation="MKAKLTTLAAAVLGVAGLMAAPAQAQDKVKIGYISDMSSLYADL EGKYGATAIQMAIDDFGGKVLGMPIELMSADHQNKADIAASKAREWIDTQGLTMIFSG TNSGTALALAKVAEEKKRVMINNGAASSALTNEQCTPYTVHYAYDTVALSKGSAGAMV ANGDKSWFFLTADYAFGHAMEADASKVVKDKGGTVVGAVRHPLNASDFSSFLLQAQNS KAQVLALANAGGDTINTIKAAKEFGIGKTMKVTPLLVFYSDIHSLGLKNTEGMQFVTS WYWDMDDASRKFADKFMAKTKRRPTEIQAADYSATMNYLKAVQAAGTTDADKVMAAWR GMKMDDFFAKGQIRPDGRYVHDMYLVQVKAPKESKGTWDYYKIVKKLPGEEVFTTKAE SKCALWK" sig_peptide 1423374..1423451 /locus_tag="Alide_1347" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 26" misc_feature 1423437..1424501 /locus_tag="Alide_1347" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1423461..1424453 /locus_tag="Alide_1347" /note="Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family; Region: PBP1_SBP_like_1; cd06327" /db_xref="CDD:107322" misc_feature order(1423680..1423688,1423749..1423757,1423899..1423901, 1424055..1424057,1424133..1424135) /locus_tag="Alide_1347" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107322" gene 1424620..1425504 /locus_tag="Alide_1348" /db_xref="GeneID:10103385" CDS 1424620..1425504 /locus_tag="Alide_1348" /inference="protein motif:PFAM:PF02653" /note="KEGG: dia:Dtpsy_2464 inner-membrane translocator; manually curated; PFAM: inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004125997.1" /db_xref="GI:319762060" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10103385" /translation="MEIFGVSMPAMLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINF AHGALFMLGALITWMAMNYFGVNYWVMLIAAPLLVGVFGVVLERLLLRWIYKLDHLYG LLLTLGLTMVIEGVFRSIYGVSGLGYDTPELLEGATNLGFMILPNYRAWVVVASIVVC IATWYVIEKTKLGAYLRAGTENPRLVEAFGVNVPVMITLTYAFGAALAAFAGVLAAPV YQVTPLMGQNLIIVVFAVVVIGGMGSIMGSILTGLGLGVIEGFTKVFYPEASSTVVFV IMAIVLLIRPAGLFGKEK" misc_feature 1424671..1425489 /locus_tag="Alide_1348" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 1425169..1425225 /locus_tag="Alide_1348" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 1425523..1426524 /locus_tag="Alide_1349" /db_xref="GeneID:10103386" CDS 1425523..1426524 /locus_tag="Alide_1349" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2463 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004125998.1" /db_xref="GI:319762061" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10103386" /translation="MNVKKFAPVGYGLLLLALIAAPFLGAYPVFVMKLLCFALFASAF NLLLGYTGLLSFGHAAFLGGAAYVTGHAVKVWGATPELGLLAGLLSGAALGLVMGWFT IRRQGIYATMITLALAQMLFFAALQLPFTGGEDGLQGVPRGKLFGVLDLSSDMTMYYV CLVIVVLAFLLIVRTIDSPFGQVLRGIKENEPRATSLGYDTNRFKLLAFVISAAIAGL AGALKTLVLGFATLSDVHWSASGHVVLMTLVGGMGTLSGPLVGAAVVVALENKIGELG NLLASLTTIDWFNTLGESVTIVTGLIFVVCVLAFRRGIMGEIIAWLERRGAGGGGSH" sig_peptide 1425523..1425603 /locus_tag="Alide_1349" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.713) with cleavage site probability 0.661 at residue 27" misc_feature 1425667..1426470 /locus_tag="Alide_1349" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 1426096..1426152 /locus_tag="Alide_1349" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene complement(1426580..1427674) /locus_tag="Alide_1350" /db_xref="GeneID:10103387" CDS complement(1426580..1427674) /locus_tag="Alide_1350" /inference="similar to AA sequence:KEGG:Ajs_3116" /note="KEGG: ajs:Ajs_3116 secreted hydrolase-like protein" /codon_start=1 /transl_table=11 /product="secreted hydrolase-like protein" /protein_id="YP_004125999.1" /db_xref="GI:319762062" /db_xref="GeneID:10103387" /translation="MIARRALLALGAFGALGGRARALPARTLAFPRDHGSHPDLRTEW WYITGQARADGRLWGFQITFFRSRVDAAQGLRSAFAARQLIFAHAALTDVQGGRQLHD QRIARAGFGIAQALEGDTDIRLRDWSLLRRPAPLPGASRYEIRAQADGFALELDCAST QPVLLQGDAGLSRKGPGPEQASYYYSQPQLAVTGAITLGGRRMAVADAGAHDNRAWMD HEWSEALMAPDAVGWDWIGMNLRDGAALTAFQLRRADGSALWAGGSWRRAGESRAEVF GPQTVLFTPLRRWRSPGSGALYPVEWRVDTPAGRFGVQALLDAQELDSRGSTGAIYWE GLSLLRDEAGRELGRGYLEMTGYAQRLRLG" sig_peptide complement(1427606..1427674) /locus_tag="Alide_1350" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.940) with cleavage site probability 0.862 at residue 23" misc_feature complement(1426604..1427551) /locus_tag="Alide_1350" /note="Hydroxyneurosporene synthase (CrtC); Region: CrtC; cl12101" /db_xref="CDD:159761" gene complement(1427671..1428741) /locus_tag="Alide_1351" /db_xref="GeneID:10103388" CDS complement(1427671..1428741) /locus_tag="Alide_1351" /inference="protein motif:PFAM:PF00291" /note="PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ajs:Ajs_3115 pyridoxal-5'-phosphate-dependent enzyme, beta subunit" /codon_start=1 /transl_table=11 /product="pyridoxal-5'-phosphate-dependent protein beta subunit" /protein_id="YP_004126000.1" /db_xref="GI:319762063" /db_xref="GO:0003824" /db_xref="GO:0030170" /db_xref="InterPro:IPR001926" /db_xref="GeneID:10103388" /translation="MPTITTPAHDSWLHGAIARIEADYQRSADTHLIPLPLPTFSEAG IDLYLKDESTHPTGSLKHRLARSLFLYALCNGWVDEGSTIVEASSGSTAVSEAYFARL LGLPFVAVMPRSTSAEKIALIEFYGGRCHFVESAGEVYEAAHAVAAQTGGHYMDQFTY AERATDWRGNNNIAESMFSQMQRERHPVPRWIVVGAGTGGTSATIGRYVRYQRHATQV CVADPAGSVFGAYHRTGDALLTAPGSRIEGIGRPRVEPSFIRTLVDRMEEVQDVDSIA AMRALSTLLGRRVGPSTGTNFVAMLTLAQQMRARGEQGSILSLLCDAGERYLPTYYDA AWVRRCMGDCAAAEQRLRALLA" misc_feature complement(1427758..1428684) /locus_tag="Alide_1351" /note="Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031" /db_xref="CDD:30381" misc_feature complement(1427758..1428618) /locus_tag="Alide_1351" /note="Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD)...; Region: Trp-synth-beta_II; cl00342" /db_xref="CDD:197407" misc_feature complement(order(1427776..1427781,1427866..1427868, 1428139..1428153,1428469..1428471,1428559..1428564)) /locus_tag="Alide_1351" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:107202" misc_feature complement(1428559..1428561) /locus_tag="Alide_1351" /note="catalytic residue [active]" /db_xref="CDD:107202" gene complement(1428760..1431399) /locus_tag="Alide_1352" /db_xref="GeneID:10103389" CDS complement(1428760..1431399) /locus_tag="Alide_1352" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_2460 protein of unknown function DUF214" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126001.1" /db_xref="GI:319762064" /db_xref="InterPro:IPR003838" /db_xref="InterPro:IPR022272" /db_xref="GeneID:10103389" /translation="MWRKPARAAIAPHNRPMLPALVRTFSWHELRRHPWRSAAAVAAV MLGVALGFAVHVINASALEEFSQAVRAVEGQPDLELRATRGTLPESLYGLVAKAPQVQ IASPWLELPVRARSSAARAGVPLRVLGADTLLLPAMAPALAPRVSEGGDRLAMLAPAT VFLNPAAQQALGLGAIDAHTPPITLQAGLATHSVRVAGTVAAGGPPLVLMDIGAAQDL FGRAGELTRIDLRLRPGGTRAVLERALAALPGWSAGVQFAAPQDAVQRVDSLSRAYRV NLTVLALVALFTGAFLVFSVLALSVAQRAPQLALLAVLGATPRERLALVLLESAALGL AGSVAGITLGAALAALALRLLGGDLGGGYFAGVQPTLQWSTAAALVYGLLGVAAALAG GWWPARQAQRLPPAQTLKGLGSQGGRAGHPWAGIFLIAASALLASVPPIFGIPLAAYV AVGLLLVGGMALLPWLVQALLARLAPLAAGSTLALLALERARRMPAGAAVAVGGVVAA LSLAVALTVMVTSFRGSVGQWLDSVLPAPLYLRAAGVAGGDEAAVFPPGFTDVLARLP GVARVQALRSSSVQLQASRPAVALLARPLGGDPARALPLVGPALPVPPGRVGVYVSEA AADLYGARPGADWPALSETFRPPVLDGQSPEATFFIAGVWRDYVRQHGAIALDSEDFA RLTGDRRASDLALWPTPGTDADALRAQVLARARLNLGEAAAAALEITSAEAIRARSLA IFDRSFAVTYWLQAVAIAIGLFGVAASFSAQVLARRKEFGLLVHLGLTRRQILAVVAG EGTAWTAVGALAGLLLGLAVAAVLVHVVNPQSFHWTMDMALPWPRLAALAGAVVAVGT LTAWLAGRQAAGRDAVMAVKEDW" misc_feature complement(<1428997..1429140) /locus_tag="Alide_1352" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 1431532..1431960 /locus_tag="Alide_1353" /db_xref="GeneID:10103390" CDS 1431532..1431960 /locus_tag="Alide_1353" /inference="protein motif:PFAM:PF00011" /note="PFAM: heat shock protein Hsp20; KEGG: ajs:Ajs_3113 heat shock protein HSP20" /codon_start=1 /transl_table=11 /product="heat shock protein hsp20" /protein_id="YP_004126002.1" /db_xref="GI:319762065" /db_xref="InterPro:IPR002068" /db_xref="GeneID:10103390" /translation="MNSLVSRGSLFDDFFKDFAPGFYVRPLHGDGLPAPSQIKIDVKE DDAAYTVQAEVPGVPKEDINVSIDGNVVSLRAEVRQHDEKKDGEKVLRSERYYGAVAR SFQLPVDVDAAQAKARYDNGVLTLTLPKKQGNKTQRLAIE" misc_feature 1431643..1431921 /locus_tag="Alide_1353" /note="Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and...; Region: ACD_LpsHSP_like; cd06471" /db_xref="CDD:107228" misc_feature order(1431652..1431666,1431685..1431687,1431691..1431693, 1431697..1431702,1431835..1431837,1431895..1431900) /locus_tag="Alide_1353" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107228" gene complement(1431970..1432641) /locus_tag="Alide_1354" /db_xref="GeneID:10103391" CDS complement(1431970..1432641) /locus_tag="Alide_1354" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_2458 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126003.1" /db_xref="GI:319762066" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103391" /translation="MSPMDELLRVQALAKRYGAATVFENVEFTLRAGEFLAIVGESGV GKSTLLNCLAGLDGWDAGRIVHAGGTDLAALDDAQRALWRRAHVGFVFQAFHVLPHLD VAQNVGLPLLLLGRPDGARVQQMLAAVGLEGLGGRLPQQLSGGQMQRVAIARALVHRP ALLLADEPTGNLDPGTAARIMDLLIAQTRGHGAALVLVTHSQAAADRADRVLRLTAQG IRPAA" misc_feature complement(1432000..1432623) /locus_tag="Alide_1354" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature complement(1432000..1432620) /locus_tag="Alide_1354" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature complement(1432501..1432524) /locus_tag="Alide_1354" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature complement(order(1432042..1432044,1432141..1432146, 1432363..1432365,1432498..1432506,1432510..1432515)) /locus_tag="Alide_1354" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature complement(1432363..1432374) /locus_tag="Alide_1354" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature complement(1432189..1432218) /locus_tag="Alide_1354" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature complement(1432141..1432158) /locus_tag="Alide_1354" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature complement(1432123..1432134) /locus_tag="Alide_1354" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature complement(1432036..1432056) /locus_tag="Alide_1354" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene complement(1432703..1433665) /locus_tag="Alide_1355" /db_xref="GeneID:10103392" CDS complement(1432703..1433665) /locus_tag="Alide_1355" /inference="protein motif:TFAM:TIGR00174" /note="TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dia:Dtpsy_2457 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase" /codon_start=1 /transl_table=11 /product="tRNA delta(2)-isopentenylpyrophosphate transferase" /protein_id="YP_004126004.1" /db_xref="GI:319762067" /db_xref="InterPro:IPR002627" /db_xref="InterPro:IPR018022" /db_xref="GeneID:10103392" /translation="MPAERIPAVALAGPTASGKTAAAFAIADALAPQLPVEIVSVDSA LVYRGMDIGTAKPTREELAHVPHHLIDIRDPLQPYSAAEFVQDATRLIAEIRARGALP LLVGGTMLYFKALMDGIDDMPPADAAVRARLEQQAAAIGWAGMHAELARVDPPTAARL APGDSQRIQRALEVWHVSGRPLSSFHTTKTGAASAHPISAGAFFSLEPQDRAWLHERI ALRFHAMLAAGFLDEVMRLRARGDLHADLPSMRCVGYRQAWESLDGLHPLASLPERGI AATRQLAKRQITWLRGMPQRHAIACDAPDATARLLQAVRHRLGA" misc_feature complement(1432709..1433659) /locus_tag="Alide_1355" /note="IPP transferase; Region: IPPT; cl00403" /db_xref="CDD:197410" gene complement(1433655..1434623) /locus_tag="Alide_1356" /db_xref="GeneID:10103393" CDS complement(1433655..1434623) /locus_tag="Alide_1356" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3110 Bcr/CflA subfamily drug resistance transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126005.1" /db_xref="GI:319762068" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10103393" /translation="MSVPSAAIGTQKAPAVPVSPGLAIVVLALLLSIQPVTTDLYLPA LPALTRSLGAPVAVGQLTLSALLLAIGCSQLAWGPLSDRFGRRPVLLAGLAVYTLASV GAALAPTMALLVAWRTAQGLAMGAAVMCARAIVRDLYTPLAGARAMSKALTGLGIVAC LCAPLGGLLTEWLGWRAALLVLTAYAVAMLALVALRLPETLRQRNPHALRPGTLARTW ALVLRSPTFWAFSLLTTATYGGLFTFLAASSFVYIGVLGTTRTQYGLVLLSTAVAYLL GTLLCRRLLGTVWPLVQGVALWSVLLAAIAWTLVQRHAEPEPAHAR" misc_feature complement(<1434096..1434506) /locus_tag="Alide_1356" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene 1434805..1435749 /locus_tag="Alide_1357" /db_xref="GeneID:10103394" CDS 1434805..1435749 /locus_tag="Alide_1357" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dia:Dtpsy_2455 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein" /protein_id="YP_004126006.1" /db_xref="GI:319762069" /db_xref="GO:0005524" /db_xref="GO:0048037" /db_xref="GO:0051287" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:10103394" /translation="MISTVPIPLLVLNGMSQRHLDQIGQRFDVCHAPTPAQRAQAIAG QGARFRAVLTIGSVGLTAQEIGAMPALELVCVLGAGYENLALDAARARGIALANGAGT NDDCVADHAFGLLIAIVRGMRALDRQCRAGVWRDAIGLPPNVSGKRLGIFGLGTIGRK IARRAAGFDMEIGYHNRSPRADVPHRYFGSLHDLAAWCDVLVCATPGGPATHHRVDAA VLQALGPQGYLVNIARGSVVDTQALAAALRERRIAGAGLDVYESEPAPPQELIHLDNV LLTPHVAGWSPEAVQASVNRFLANAEGYFAGRGVVSPI" misc_feature 1435138..1435653 /locus_tag="Alide_1357" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(1435746..1436183) /locus_tag="Alide_1358" /db_xref="GeneID:10103395" CDS complement(1435746..1436183) /locus_tag="Alide_1358" /inference="protein motif:PFAM:PF01230" /note="PFAM: histidine triad (HIT) protein; KEGG: dia:Dtpsy_2454 histidine triad (HIT) protein" /codon_start=1 /transl_table=11 /product="histidine triad (hit) protein" /protein_id="YP_004126007.1" /db_xref="GI:319762070" /db_xref="InterPro:IPR001310" /db_xref="InterPro:IPR019808" /db_xref="GeneID:10103395" /translation="MPMFVDTSPPGQCIFCRLVAGEIPSAKVYEDALTIAFMDIGQVT PGHVLVATRRHAATLLDATPEEAAAVMQTAHRVALAVQAAFDPPGLTLLQANGTLGGQ TVAHFHMHVVPRHEADGIALTWPRKEPPAAVLAGYAERLRAAL" misc_feature complement(1435842..1436147) /locus_tag="Alide_1358" /note="HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life...; Region: HINT_subgroup; cd01277" /db_xref="CDD:29590" misc_feature complement(order(1435848..1435856,1435860..1435862, 1435866..1435868)) /locus_tag="Alide_1358" /note="HIT family signature motif; other site" /db_xref="CDD:29590" misc_feature complement(1435860..1435862) /locus_tag="Alide_1358" /note="catalytic residue [active]" /db_xref="CDD:29590" gene complement(1436293..1437315) /locus_tag="Alide_1359" /db_xref="GeneID:10103396" CDS complement(1436293..1437315) /locus_tag="Alide_1359" /inference="protein motif:PFAM:PF00267" /note="PFAM: porin Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type" /codon_start=1 /transl_table=11 /product="porin gram-negative type" /protein_id="YP_004126008.1" /db_xref="GI:319762071" /db_xref="GO:0005215" /db_xref="InterPro:IPR001702" /db_xref="GeneID:10103396" /translation="MPKKLIALAAAALCCTGAYAQSSVQVTGLADVYAGSMKMAGDAS RKSVVNSGGMTTSWFGFKGTEDLGGGLKANFQLTSFIQVDNGTQGRFGGDTFFSRDAN VSLSGSFGSVLLGRWMAPNFLPSVVGNPMGDSFAFSPLILHMDVPLFNASGWKATVPS DTGWSNQIAYSTPDIGGFKANLQYQFGEQAGDNGKKNVGANFFYFGGPLTLTGFYERA QISNPGQGTYLGTTKKDWMLAAAYDFKVVKPYLSYGQAKADNNPDKAKTLQVGASAPL AGGSLLASWAKTDLSFSDLDRKTFTLGYDYYLSKRTDVYAMYMNDKITNQSTGNSFGV GIRHRF" sig_peptide complement(1437253..1437315) /locus_tag="Alide_1359" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.974 at residue 21" misc_feature complement(1436296..1437252) /locus_tag="Alide_1359" /note="Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface...; Region: gram_neg_porins; cd00342" /db_xref="CDD:30071" misc_feature complement(order(1436296..1436298,1436302..1436304, 1436308..1436310,1436380..1436382,1436389..1436394, 1436818..1436823,1436827..1436829,1436968..1436976, 1437004..1437009,1437010..1437015,1437019..1437024, 1437064..1437075,1437079..1437081,1437085..1437093, 1437097..1437099,1437115..1437129,1437214..1437222, 1437226..1437228,1437244..1437246,1437250..1437252)) /locus_tag="Alide_1359" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:30071" misc_feature complement(order(1436827..1436829,1436929..1436931, 1437019..1437021,1437142..1437144,1437229..1437231)) /locus_tag="Alide_1359" /note="eyelet of channel; other site" /db_xref="CDD:30071" gene 1437563..1438186 /locus_tag="Alide_1360" /db_xref="GeneID:10103397" CDS 1437563..1438186 /locus_tag="Alide_1360" /inference="protein motif:PFAM:PF00027" /note="KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_004126009.1" /db_xref="GI:319762072" /db_xref="GO:0003700" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:10103397" /translation="MFPTPSSDQSVQIEVATAGEVLRERHQQPASVLYLDSGRVLLGV REDGVMRHQLGVVEGPFWLDAATALLDQPCAVDMVADTRVQLRRMPVEEFKRSFDALP QAAQVLVRDMAIGYCQQTELAVSRLAQDAEARCAQWLLRHAHNSEDGGLRVTLHQRKR LIAAQLGIAPETLSRVLRHLREHGLIAGTGNVLSLPQPRALQMVAGF" misc_feature 1437614..1437871 /locus_tag="Alide_1360" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cl00047" /db_xref="CDD:193628" misc_feature 1438007..1438132 /locus_tag="Alide_1360" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 1438472..1440568 /locus_tag="Alide_1361" /db_xref="GeneID:10103398" CDS 1438472..1440568 /locus_tag="Alide_1361" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: dia:Dtpsy_2450 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004126010.1" /db_xref="GI:319762073" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR013655" /db_xref="GeneID:10103398" /translation="MTRPEHAPALWEQESEDAGSPPWFPGPLVRKLLLVAAAAIVLSG ALAAWWVSHAIAQDSMDRLVSQQNDEVELVARLLASKIEQSQKVLSTVADSITPEMLD SPASLEWLLQQGLPAVRFFDAMQVARKDGDLRVNLRYGKLAKASDLDPAERDYLVRTL LNGKPLVSGLIGSTAADARVMFTMPLLRAEGRVMGAVAGVLRLQSQGLLPHSLALPER SESRLIVFTRDGVILSHPTLERVLGKVSDEPGLGEVYAQWRSADQPLAAGATTQLQGT HVVSLASVPMPQWLVARVSDAQAMLEPLHGAQRRAWWLAAEATGAVCVLAVLAMVWLA RPLALLRQRARAVLEAEDREEEGAGEAGADGPWPRSSGEVDDVVRVCARLLESRRLGW RGAQVVERQLQAVLDHVPLGIALTRAEHVEVVSLQACRLLGYTPAQLQGHSLLALLAP QEGGVDVAQRVHAEFAAHGVFDGELPLLRQDGGTLWVRAQGQPVQPGDPARGQVWTLE DCTAEREARLQQAWERTHDPLTQLLDRTEFKRRLQVLLAERAQRGPQQQPDDGGGVLL FLDLDHFTVVNDVAGRDVGDAVLSHLARLLESEVRQTGWAARLGGDEFAVLLPGATLA RGEAVAERLRAAVQAWEPAFQGRSFTLGLSIGLVPLVPGLREVSAVLHAADMACYEAK RAGRNRIHLGEVRALA" misc_feature 1439669..>1439827 /locus_tag="Alide_1361" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 1439756..1439986 /locus_tag="Alide_1361" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature 1440044..1440541 /locus_tag="Alide_1361" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1440155..1440157,1440305..1440307) /locus_tag="Alide_1361" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1440191..1440193,1440200..1440205,1440215..1440217, 1440227..1440229,1440293..1440295,1440299..1440310) /locus_tag="Alide_1361" /note="active site" /db_xref="CDD:143635" misc_feature order(1440281..1440283,1440365..1440367) /locus_tag="Alide_1361" /note="I-site; other site" /db_xref="CDD:143635" gene 1440705..1442294 /locus_tag="Alide_1362" /db_xref="GeneID:10103399" CDS 1440705..1442294 /locus_tag="Alide_1362" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_2447 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126011.1" /db_xref="GI:319762074" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103399" /translation="MNPIPHSASAAPAAGEPPRLQLTGITKRYPAVVANDGVSLTVRP GEVHAVLGENGAGKSTLMKIIYGAVKPDAGQMLFDGRPVQVRNPQEARQLGIAMVFQH FSLFDTLTVAENVWLGQDKSVPLAEVARRISATAAEYGLDIDPQRPVHTLSVGEMQRV EIIRALLTAPRLLILDEPTSVLTPQAVDKLFVVLRKLASEGCSILYISHKLHEIRALC TACTVMRGGKVTGVCDPSQESNASLSRMMIGAEPPQLAHRAQVPGEVVLRTRALSLPV ADPFGVALIDIELAVRAGEVVGIAGISGNGQKELLQALSGEDRRAEAAMVQLSGRNAG RLGPRRRRALGLHFVPEERLGRGAVPTMGLAHNLLLTRGDAVGAGGWLRMGRLREQAR GIIARFQVKAGGPDAAAQSLSGGNLQKFIVGREIDAGPKLLIVAQPTWGVDVGAAAQI RGEILRLRDQGCAVLVLSEELDELFEICDRLHVLAKGRLSPSVPRAEATVARIGEWMS GLWHAEVQAHLGAGEVGHAQA" misc_feature 1440762..1442231 /locus_tag="Alide_1362" /note="ABC-type uncharacterized transport systems, ATPase components [General function prediction only]; Region: COG3845" /db_xref="CDD:33636" misc_feature 1440762..1441400 /locus_tag="Alide_1362" /note="This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and...; Region: ABC_Carb_Monos_I; cd03216" /db_xref="CDD:72975" misc_feature 1440858..1440881 /locus_tag="Alide_1362" /note="Walker A/P-loop; other site" /db_xref="CDD:72975" misc_feature order(1440867..1440872,1440876..1440884,1441005..1441007, 1441230..1441235,1441329..1441331) /locus_tag="Alide_1362" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72975" misc_feature 1440996..1441007 /locus_tag="Alide_1362" /note="Q-loop/lid; other site" /db_xref="CDD:72975" misc_feature 1441158..1441187 /locus_tag="Alide_1362" /note="ABC transporter signature motif; other site" /db_xref="CDD:72975" misc_feature 1441218..1441235 /locus_tag="Alide_1362" /note="Walker B; other site" /db_xref="CDD:72975" misc_feature 1441242..1441253 /locus_tag="Alide_1362" /note="D-loop; other site" /db_xref="CDD:72975" misc_feature 1441317..1441337 /locus_tag="Alide_1362" /note="H-loop/switch region; other site" /db_xref="CDD:72975" misc_feature 1441491..1442171 /locus_tag="Alide_1362" /note="This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (; Region: ABC_Carb_Monos_II; cd03215" /db_xref="CDD:72974" gene 1442281..1443354 /locus_tag="Alide_1363" /db_xref="GeneID:10103400" CDS 1442281..1443354 /locus_tag="Alide_1363" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2446 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004126012.1" /db_xref="GI:319762075" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10103400" /translation="MLKLEARPQASRLWSYGSPLLALAITVLIGVALFAALGKDPVRG LQVFFWEPVKSPYALGELALKATPLLLVALGLAVCFRSNIWNIGAEGQFVIGAVAAGG IALLADKTTGPWIVPAILVAGVLGGMAWAGITALLRDRFNANEILVSLMLVYVATLLL GYLVYGPWKDPMGYNFPQTRMFERVTQMPKLFVGSRVTIGLPLALVGSALLWVFLFRT RAGFALQVGGLAPAAARYAGFSSRRALWAALLISGATAGLAGALEVAGPIGQLTPYVP AGYGFAAIIVAFVGRLHPVGMVFSALLMSMFYIGGELAQSRLGLPKSLTGVFQGLLLF TLLACDTLIAYRVRWVGARGGLR" sig_peptide 1442281..1442388 /locus_tag="Alide_1363" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.618) with cleavage site probability 0.317 at residue 36" misc_feature 1442476..1443270 /locus_tag="Alide_1363" /note="Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (; Region: TM_PBP1_transp_TpRbsC_like; cd06580" /db_xref="CDD:119322" misc_feature 1442974..1443030 /locus_tag="Alide_1363" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119322" gene 1443354..1444274 /locus_tag="Alide_1364" /db_xref="GeneID:10103401" CDS 1443354..1444274 /locus_tag="Alide_1364" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2445 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004126013.1" /db_xref="GI:319762076" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10103401" /translation="MESYALLLGSTLSAGTVLAIAALGLLINEKAGIVNLGAEGMMLC AAIAAFATVVHTGSFALGLLAGMAAGAVLAALFGVLVIWFNTNQYATGLALSLFGVGF SAFVGIGYVQAKLPDTPKFSWPLLGDLPVVGQALFRHHPLVYLTMVLVALMVWFLYRT RAGLVLRSVGESPESAHALGYPVRRIRLGAVMAGGALCGLAGAYISTVYTPLWVEGMV AGRGWIALALTTFATWRPARVLLGAYLFGGVTMLQFHLQATGVQVASQLLSMLPYLAT IVVLALISRNPAWIRANMPASLGKPFHPGS" sig_peptide 1443354..1443419 /locus_tag="Alide_1364" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.926) with cleavage site probability 0.480 at residue 22" misc_feature 1443399..1444193 /locus_tag="Alide_1364" /note="Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (; Region: TM_PBP1_transp_TpRbsC_like; cd06580" /db_xref="CDD:119322" misc_feature 1443873..1443929 /locus_tag="Alide_1364" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119322" gene 1444297..1445442 /locus_tag="Alide_1365" /db_xref="GeneID:10103402" CDS 1444297..1445442 /locus_tag="Alide_1365" /inference="protein motif:PFAM:PF02608" /note="PFAM: basic membrane lipoprotein; KEGG: dia:Dtpsy_2444 basic membrane lipoprotein" /codon_start=1 /transl_table=11 /product="basic membrane lipoprotein" /protein_id="YP_004126014.1" /db_xref="GI:319762077" /db_xref="GO:0008289" /db_xref="InterPro:IPR003760" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10103402" /translation="MNSLNKRTLLKTAALSAMALAALAGCGRKEEAAPAAAPAPAPAA DKLKIAFMYVSPIGDGGWTYQHDLGRKAIQEKYGDRIETSFVESVPESADAERVLRDM AAQGNKLVFATSFGYQEFVQKAAADLKDVKFEHATGYKQADNVATYDTKTFEGAYLAG IVAGGMTKTKTVGVVASVPIPEVVRNINSFVLGAQSVDPGIKAKVVWVNEWFNPPKEA EAASTLINGGVDVMYQNTNSPAVLKTAEERGARAFGKDGDMSSFAPKAHLGSAVIDWT PYYSKVVDDTLAGQWKGGAFWWGVKEGAIDLRKIADDVPQEIKDRVEKARAGLKDGSF AVWTGPIKDNTGKELLAAGQAADLKFLTGINFYVAGVEGKVPGTEGK" sig_peptide 1444297..1444395 /locus_tag="Alide_1365" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.408 at residue 33" misc_feature 1444438..1445217 /locus_tag="Alide_1365" /note="Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea; Region: PBP1_BmpA_Med_like; cd06353" /db_xref="CDD:107348" misc_feature order(1444456..1444461,1444483..1444485,1444705..1444707, 1444843..1444845,1444927..1444929,1445062..1445064, 1445113..1445115) /locus_tag="Alide_1365" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107348" gene 1445483..1446649 /locus_tag="Alide_1366" /db_xref="GeneID:10103403" CDS 1445483..1446649 /locus_tag="Alide_1366" /inference="protein motif:PFAM:PF02608" /note="PFAM: basic membrane lipoprotein; KEGG: dia:Dtpsy_2443 basic membrane lipoprotein" /codon_start=1 /transl_table=11 /product="basic membrane lipoprotein" /protein_id="YP_004126015.1" /db_xref="GI:319762078" /db_xref="GO:0008289" /db_xref="InterPro:IPR003760" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10103403" /translation="MTDLHKRSLFKLAALSAVAAAALAGCGKKEEPAPAAPAPAAAPA EKPAEKPAPLKIGFAYVGPVGDGGWSYAHDQARKKLQAEFGDRIQTSYVESVPEGPDA ERVLRDMITQGDKLIFGTTFGYMDVMQKLGAEFPDVKFEHATGYKTSANVRTYDSRTY EGAYLAGIIAGAMTKTGTLGVVGSVPIPEVLRNLNSFTLGAQSVNPNVKTKVVWVNEW FSPPKETEAATSLINGGADVLFQNTDSPAVLKTAQEKGKRAFGWDSDMTAYGPKAHLA SAVINWAPYYIKATKDVLDGTWSTGQSWWGVKEGAIDLVSIAEDVPAEIKAKVDEAKN GLKNGSFAIWKGPIMDNTGKTVLEKDAVADDKFLTGINFYVKGVEGQVPGGEKK" sig_peptide 1445483..1445572 /locus_tag="Alide_1366" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.847) with cleavage site probability 0.338 at residue 30" misc_feature 1445645..1446424 /locus_tag="Alide_1366" /note="Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea; Region: PBP1_BmpA_Med_like; cd06353" /db_xref="CDD:107348" misc_feature order(1445663..1445668,1445690..1445692,1445912..1445914, 1446050..1446052,1446134..1446136,1446269..1446271, 1446320..1446322) /locus_tag="Alide_1366" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107348" gene complement(1446700..1447998) /locus_tag="Alide_1367" /db_xref="GeneID:10103404" CDS complement(1446700..1447998) /locus_tag="Alide_1367" /inference="protein motif:PFAM:PF01266" /note="PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc3407 oxidoreductase protein" /codon_start=1 /transl_table=11 /product="fad dependent oxidoreductase" /protein_id="YP_004126016.1" /db_xref="GI:319762079" /db_xref="GO:0016491" /db_xref="InterPro:IPR006076" /db_xref="GeneID:10103404" /translation="MNTRSIASHPAAPSLWAATAPAAPDTPALGASVSTDVLVVGAGY TGLSTALHLAESGARVCVLDAHAPGWGASGRNGGQVNPTLKYDPDDLVRIYGAERAEP LIDTVSRSADLVYGLIARHAIDCAPVRAGWLQVGYTQHAVDGMHARARQWERRGVRVE MLDRAAVAARIGTPAFAGGWLDGRAGGVQPLAYARGLARAAQGLGVQVHGGSPVVALE RQGMHWIATTAQGHRVQAQQVVLGTNGYTDGLWPGLARTVLAANSFIVATRPLGPAGD GILPGGETGSTSQRLLLYFRKDAQGRLLMGGRGHFADPQGPQDFSHLERAVALMFPQL GPLQYEYRWAGRIAVTRDFMPHLHRPAPGITMALGYNGRGIAMATSLGRHAAALVAGS SAAACPFPVTPVQPIPLHGLQRFYIAAGVAWYSLLDRLGA" misc_feature complement(1446850..1447905) /locus_tag="Alide_1367" /note="Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:31009" misc_feature complement(1446871..1447893) /locus_tag="Alide_1367" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" gene complement(1447995..1448741) /locus_tag="Alide_1368" /db_xref="GeneID:10103405" CDS complement(1447995..1448741) /locus_tag="Alide_1368" /inference="protein motif:PFAM:PF00005" /note="KEGG: rso:RSc3408 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126017.1" /db_xref="GI:319762080" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103405" /translation="MIEIDRLEKAYGEHRVLQGVSLRVERGEVVCLIGPSGSGKSTVL RCINGLESYQGGEVRAFGERVDNRAPSIHRLRSRMGMVFQRFNLFPHRTVIENVMEGP VYVKGEAPAKARAEALELLRKVGLADKAQAWPAQLSGGQQQRVAIARALAMKPEAMLF DEPTSALDPELVGDVLEVMRQLAGEGMTMIVVTHEMGFAREVADRVCFLHSGSIVEEG PAAQVLGAPRHARTQDFLRRVLHAPAGGAA" misc_feature complement(1448022..1448741) /locus_tag="Alide_1368" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature complement(1448100..1448738) /locus_tag="Alide_1368" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature complement(1448619..1448642) /locus_tag="Alide_1368" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature complement(order(1448160..1448162,1448256..1448261, 1448490..1448492,1448616..1448624,1448628..1448633)) /locus_tag="Alide_1368" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature complement(1448490..1448501) /locus_tag="Alide_1368" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature complement(1448304..1448333) /locus_tag="Alide_1368" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature complement(1448256..1448273) /locus_tag="Alide_1368" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature complement(1448238..1448249) /locus_tag="Alide_1368" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature complement(1448154..1448174) /locus_tag="Alide_1368" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene complement(1448738..1449403) /locus_tag="Alide_1369" /db_xref="GeneID:10103406" CDS complement(1448738..1449403) /locus_tag="Alide_1369" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: rso:RSc3409 amino-acid transmembrane ABC transporter protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004126018.1" /db_xref="GI:319762081" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10103406" /translation="MQAFLQHAREFLPILLQGAVVTVQVTVLSFLLSSAIGLVLALGK LSPVRAVSVCASTVINVIRGLPIIVQLFYIYFVLPDIGIQLSAFQAGVIGLGIAYSAY QAENFRAGIEAVDPGQREAALAMGMRPALLMRRVILPQAFRIALPPYGNTLVMMLKDS SLVSTITVAEMTRAGQLIASSTFQNMTVYTLVALLYLAMSLPLVWSLRRLERRFGAGR KAP" misc_feature complement(1448753..1449373) /locus_tag="Alide_1369" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature complement(1448801..1449349) /locus_tag="Alide_1369" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1448801..1448806,1448813..1448818, 1448822..1448827,1448834..1448839,1448867..1448872, 1448909..1448914,1448921..1448932,1448951..1448953, 1448960..1448965,1449005..1449007,1449056..1449058, 1449065..1449070,1449080..1449082,1449086..1449091, 1449098..1449100,1449104..1449106,1449110..1449115, 1449179..1449181,1449185..1449190,1449197..1449226, 1449230..1449241,1449269..1449271,1449284..1449289, 1449296..1449301)) /locus_tag="Alide_1369" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1448915..1448932,1449179..1449223)) /locus_tag="Alide_1369" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1448837..1448839,1448867..1448869, 1448876..1448878,1448912..1448914,1449128..1449130, 1449179..1449181)) /locus_tag="Alide_1369" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1448984..1448986,1448996..1449001, 1449017..1449055)) /locus_tag="Alide_1369" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1449430..1450200) /locus_tag="Alide_1370" /db_xref="GeneID:10103407" CDS complement(1449430..1450200) /locus_tag="Alide_1370" /inference="protein motif:PFAM:PF00497" /note="KEGG: rsl:RPSI07_0031 amino acid-binding periplasmic (Pbp) abc transporter protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_004126019.1" /db_xref="GI:319762082" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10103407" /translation="MHRFIRRLHHIALGFCAAGAVTLAAAQGAAPATYNVGATATGIP FTFLDVKTNSIQGMMVDTIQAVAKAGGFQVNVQQTVFSALIPSLTSNKIDIVSAAMLK TPTRQQVVDFSDPVYSYGEGLIVKADDAKAYATLDDLKGEIVGAQVGTVFLDMLQKKG IFKEVRSYDSVADMTRDLALGRIKAGLGDQPIIAYQIRQNTFQGVKLAEGYKPSNVGD VCLVVRKGDTATLERLNKAIAAIKADGTLAQIVKKWGI" sig_peptide complement(1450120..1450200) /locus_tag="Alide_1370" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.356 at residue 27" misc_feature complement(1449436..1450098) /locus_tag="Alide_1370" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature complement(1449436..1450095) /locus_tag="Alide_1370" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature complement(order(1449634..1449636,1449748..1449750, 1449883..1449885,1449958..1449960,1450075..1450077)) /locus_tag="Alide_1370" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature complement(order(1449655..1449657,1449673..1449675, 1449685..1449687)) /locus_tag="Alide_1370" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature complement(1449544..1449561) /locus_tag="Alide_1370" /note="hinge residues; other site" /db_xref="CDD:29040" gene 1450404..1451198 /locus_tag="Alide_1371" /db_xref="GeneID:10103408" CDS 1450404..1451198 /locus_tag="Alide_1371" /inference="protein motif:PFAM:PF01614" /note="KEGG: rso:RSc3411 transcription regulator protein; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="transcriptional regulator iclr" /protein_id="YP_004126020.1" /db_xref="GI:319762083" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10103408" /translation="MNTSALPDEETNPLFNQSLEKGLAVLCSFSAQRRSMTLADVASA AGISKSSAQRMVFTLEQLGFVRKHPQTRRYQLTPRVMRIGYNYLAANPVIDLANPYLS ELTNATTETSCLTEADGLEMVYVARFISAQFVPVHMPIGSRIPMYCTASGRAWLSALP DGEALELLRASERVAHTRHTITDEAAILAELNQARQRGFAVNREELFLGDMTLGAPVI GSHGRPVAAVHIVAPTSRWTPEEAERRLGPALLACARSLSNSVRAL" misc_feature 1450446..1451180 /locus_tag="Alide_1371" /note="beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; Region: pcaR_pcaU; TIGR02431" /db_xref="CDD:131484" misc_feature 1450449..1450715 /locus_tag="Alide_1371" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1450803..1451180 /locus_tag="Alide_1371" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 1451237..1451590 /locus_tag="Alide_1372" /db_xref="GeneID:10103409" CDS 1451237..1451590 /locus_tag="Alide_1372" /inference="protein motif:PFAM:PF05899" /note="PFAM: protein of unknown function DUF861 cupin_3; KEGG: reu:Reut_C6271 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126021.1" /db_xref="GI:319762084" /db_xref="InterPro:IPR008579" /db_xref="GeneID:10103409" /translation="MGIQVIAQSATTPQLQDWGPVTVPLSTPACALRGLEVRLDGRPD SDMGLWECSPGRFQRQVASGEVMHILAGAGRFMPEAEGAAPVEFRAGDTLFFPPDTRG VWEIRETVRKLYVMV" misc_feature 1451258..1451587 /locus_tag="Alide_1372" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 1451683..1452735 /locus_tag="Alide_1373" /db_xref="GeneID:10103410" CDS 1451683..1452735 /locus_tag="Alide_1373" /EC_number="3.5.4.4" /inference="protein motif:TFAM:TIGR01430" /note="TIGRFAM: adenosine deaminase; KEGG: dia:Dtpsy_2442 adenosine deaminase; PFAM: adenosine/AMP deaminase" /codon_start=1 /transl_table=11 /product="adenosine deaminase" /protein_id="YP_004126022.1" /db_xref="GI:319762085" /db_xref="GO:0004000" /db_xref="InterPro:IPR001365" /db_xref="InterPro:IPR006330" /db_xref="GeneID:10103410" /translation="MVKLPPIPPERLPGLLAASPKAELHIHIEGSLEPEMIFALARRN GVALPYAGVEELRRAYAFTDLQSFLDIYYAGASVLLHEQDFYDMARAYLARAAGDNVV HAEIFFDPQTHTARGVAMEAVINGLYRACADARAEQGISASLILSFLRHLSEDDAFAT LEQAMPLLDRIVGVGLDSSELGHPPEKFARVFARCRELGLHVVAHAGEEGPPAYIWGA LDVLKAERIDHGVQAVHDPALMRRLAQERIPLTVCPLSNQKLCVFPDLSRHNLKQLLD AGLVATVNSDDPAYFGGYVNDNFTQTFAALPALTARDAWQLAGNSFEASFAAAADKRA WQHRLEECFARHAGRG" misc_feature 1451740..1452699 /locus_tag="Alide_1373" /note="Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in...; Region: ADA; cd01320" /db_xref="CDD:30063" misc_feature order(1451755..1451757,1451761..1451763,1452295..1452297, 1452304..1452306,1452367..1452369,1452538..1452543) /locus_tag="Alide_1373" /note="active site" /db_xref="CDD:30063" misc_feature order(1451761..1451763,1451767..1451769,1452214..1452216, 1452304..1452306,1452538..1452543) /locus_tag="Alide_1373" /note="purine riboside binding site [chemical binding]; other site" /db_xref="CDD:30063" gene complement(1452741..1454048) /locus_tag="Alide_1374" /db_xref="GeneID:10103411" CDS complement(1452741..1454048) /locus_tag="Alide_1374" /EC_number="3.1.2.2" /inference="protein motif:PRIAM:3.1.2.2" /note="KEGG: bav:BAV1558 acyl coenzyme A thioester hydrolase; PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase" /codon_start=1 /transl_table=11 /product="palmitoyl-CoA hydrolase" /protein_id="YP_004126023.1" /db_xref="GI:319762086" /db_xref="InterPro:IPR006862" /db_xref="InterPro:IPR016662" /db_xref="GeneID:10103411" /translation="MAAHVLCVTPADALIDVPRSIRVERLAPGQPVTVAASTRRSGVQ WRSEASFEAGADGVVDTARDAPVSGSYSGASGMGLVWSQAPVGSKSRELFNQPVAEPL VTEITASAGGAQARATLVQRLAADGVTRRELREDGLVGTLYLPPGPGPHPAVMVLNGS GGGINEPRAALYASRGFAALALAYFKAPGLSDYISNTPLEYFQKGLQWIRREVRPLHD FVAVSGQSRGGELVLLLGATFARQVSAVVAYVPSAFVHSGQNACDPKIGREGPTWLLN GKPLAHLWENNRTASWAPFDEGPEPHRHERAIRTALQDPGALARARIPVEAIEGPVML LSGTDDGSWPSSVFSRMVRDKLAEVRHPHDVQWLDFENAGHAILFPCVPTTQLVYAHP VSGKVSTGGGNPADNARADEQSWAGVLQFLRDAVAARGASQPS" misc_feature complement(1453641..1454006) /locus_tag="Alide_1374" /note="Acyl-CoA thioester hydrolase/BAAT N-terminal region; Region: Bile_Hydr_Trans; pfam04775" /db_xref="CDD:191087" misc_feature complement(1452765..1453460) /locus_tag="Alide_1374" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(1454048..1455616) /locus_tag="Alide_1375" /db_xref="GeneID:10103412" CDS complement(1454048..1455616) /locus_tag="Alide_1375" /inference="protein motif:PFAM:PF00496" /note="PFAM: extracellular solute-binding protein family 5; KEGG: bav:BAV1559 ABC transporter, substrate binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_004126024.1" /db_xref="GI:319762087" /db_xref="GO:0005215" /db_xref="InterPro:IPR000914" /db_xref="GeneID:10103412" /translation="MKRLILSTLTASLLAAGAAAHAQTLSIGFADPLSSLDPQLNNHA GDRSVDLHFWDLLVENKANRLQPGLAESWKNLDPRTWEFKLRKDVKWHDGKPFTADDV IFSYQRARNVPGSVATFAGYLRTVESVTAKDPHTLVIKTNIPNPDLPLNLASVHIVSK HVGEKAATDDYNAGRAVIGTGPYKFVSYTPGDRVVMTRNDAYWDGKPYWEKVNYRYIN NAAARTAALLAGDVDVIDKVSVSDLARLKQSSNITVFPYDGLRVMLLQPSFNPAQSPY LTDNAGNPLPKNPLLDQRVRQALSIAINRKAITDRILQDTATEANQWMPKGTYGYNPE IKNIAFDAAQAKKLLADAGFPEGFKLTMHVPNDRYPQGPETAQAVAQFWTRIGVKTQV EVVPWSVYSGRANKNEYAMSMLAWGNGTGEASYALVNVLATVDKAKGLGASNWGHYSN PAVDKALAESTAEFDTARREAILRASAKVVSDDAGIIPLFHYRNVWAAKKGLKVTPMT SDRTAAMMVTRDGK" sig_peptide complement(1455548..1455616) /locus_tag="Alide_1375" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.979 at residue 23" misc_feature complement(1454093..1455538) /locus_tag="Alide_1375" /note="The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_2; cd08498" /db_xref="CDD:173863" misc_feature complement(1454303..1455427) /locus_tag="Alide_1375" /note="Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496" /db_xref="CDD:189574" gene complement(1455740..1456735) /locus_tag="Alide_1376" /db_xref="GeneID:10103413" CDS complement(1455740..1456735) /locus_tag="Alide_1376" /inference="protein motif:TFAM:TIGR01727" /note="TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rsl:RPSI07_1508 dipeptide transport ATP-binding (ABC superfamily); SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide abc transporter, atpase subunit" /protein_id="YP_004126025.1" /db_xref="GI:319762088" /db_xref="GO:0005524" /db_xref="GO:0015197" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103413" /translation="MTETPAAIELRQISKRFGERKPGLLDRLGLARPPAVTRAVDHVD LHVAEGEVVGLVGESGCGKSTLGRLAAGLLAPSDGEVLVGGRRMADMDARQRHAARMR VQMIFQDPYASLNPRMRVDEIVGEAARIHGLVDAAGFDDYVCAQMRRAGLDPALRHRY PHQFSGGQRQRIGIARALAVQPQVLVCDEAVAALDVSIQAQILNLFMDLRQELGLTYL FISHDLGVVEHLSDRVVVMYLGRVIETAPVEELFGRPNHPYTQALLAEVPRMGARHKT YSAIQGEIPSPLHPPPGCHFHPRCPHAMPRCKVEAPQLKGIAIRHLSACHLNDGS" misc_feature complement(1455998..1456714) /locus_tag="Alide_1376" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(1455758..1456657) /locus_tag="Alide_1376" /note="dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308" /db_xref="CDD:183084" misc_feature complement(1456544..1456567) /locus_tag="Alide_1376" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(1456070..1456072,1456169..1456174, 1456412..1456414,1456541..1456549,1456553..1456558)) /locus_tag="Alide_1376" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(1456412..1456423) /locus_tag="Alide_1376" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(1456217..1456246) /locus_tag="Alide_1376" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(1456169..1456186) /locus_tag="Alide_1376" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(1456151..1456162) /locus_tag="Alide_1376" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(1456064..1456084) /locus_tag="Alide_1376" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature complement(1455755..1456015) /locus_tag="Alide_1376" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene complement(1456732..1457706) /locus_tag="Alide_1377" /db_xref="GeneID:10103414" CDS complement(1456732..1457706) /locus_tag="Alide_1377" /inference="protein motif:TFAM:TIGR01727" /note="TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rpf:Rpic12D_1762 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide abc transporter, atpase subunit" /protein_id="YP_004126026.1" /db_xref="GI:319762089" /db_xref="GO:0005524" /db_xref="GO:0015197" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103414" /translation="MTIVPTLQVRNLQTHFHTRAGVLRAVDGVSFTLARGRILGLVGE SGSGKSVTGFSIMGLVDPPGRVVGGEVLFQGRDLTKLPPREMRALQGSRIAMIFQDPM MTLNPVLRVDTQMIEAVRAHERVSHAQARERARDTLGLMGIPSPDERLLAYPHQLSGG MRQRVAIAIAMLHRPDLIIADEPTTALDVTIQAQILSEVQKLARQQGTALIWITHDLS VVAGLADEVAVMYAGRIVEHGPVDAVLDAPLHPYTTGLIGSLPSNNRRGQRLRQIPGM TPNLLDLPAGCAFAARCPRAGEACAQQPGLTEPRPQRLVRCFYPMEAA" misc_feature complement(1456747..1457688) /locus_tag="Alide_1377" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444" /db_xref="CDD:30793" misc_feature complement(1456990..1457688) /locus_tag="Alide_1377" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(1457557..1457580) /locus_tag="Alide_1377" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(1457062..1457064,1457161..1457166, 1457410..1457412,1457554..1457562,1457566..1457571)) /locus_tag="Alide_1377" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(1457410..1457421) /locus_tag="Alide_1377" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(1457209..1457238) /locus_tag="Alide_1377" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(1457161..1457178) /locus_tag="Alide_1377" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(1457143..1457154) /locus_tag="Alide_1377" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(1457056..1457076) /locus_tag="Alide_1377" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature complement(1456750..1457007) /locus_tag="Alide_1377" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene complement(1457703..1458602) /locus_tag="Alide_1378" /db_xref="GeneID:10103415" CDS complement(1457703..1458602) /locus_tag="Alide_1378" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1562 ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004126027.1" /db_xref="GI:319762090" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103415" /translation="MNTVALKHESPWRRNAGEFFASKTAVLGLGVAVLLIAAALLAPW ITPQNPYDLNQLDVMDARLAPGALNGEGTFHYWLGSDGQGRDLYSGILYGLRISLLVG VGSALIAGVLGTLLGLLAAYAGGKTDALIMRVVDLLLSFPSILVAMMILAYLGKGVGN VVLTLVLLEWAYYARTARGQALVERRREYVEAARCLDIPGWRIMLRHILPNCLPPLIV IGTLQIARAITLEATLSFLGLGVPVTEPSLGLLIANGYQYMLSGEYWISFYPGIALLV TIVAINLVGDRLRDVLNPRTRRQ" misc_feature complement(1457727..1458476) /locus_tag="Alide_1378" /note="nickel ABC transporter, permease subunit NikC; Region: nickel_nikC; TIGR02790" /db_xref="CDD:131837" misc_feature complement(1457739..1458320) /locus_tag="Alide_1378" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1457739..1457744,1457751..1457756, 1457763..1457768,1457772..1457777,1457784..1457789, 1457850..1457855,1457895..1457900,1457907..1457918, 1457937..1457939,1457946..1457951,1457991..1457993, 1458042..1458044,1458051..1458056,1458066..1458068, 1458072..1458077,1458084..1458086,1458090..1458092, 1458096..1458101,1458150..1458152,1458156..1458161, 1458168..1458197,1458201..1458212,1458240..1458242, 1458255..1458260,1458267..1458272)) /locus_tag="Alide_1378" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1457901..1457918,1458150..1458194)) /locus_tag="Alide_1378" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1457787..1457789,1457850..1457852, 1457859..1457861,1457898..1457900,1458114..1458116, 1458150..1458152)) /locus_tag="Alide_1378" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1457970..1457972,1457982..1457987, 1458003..1458041)) /locus_tag="Alide_1378" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1458599..1459573) /locus_tag="Alide_1379" /db_xref="GeneID:10103416" CDS complement(1458599..1459573) /locus_tag="Alide_1379" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1563 ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004126028.1" /db_xref="GI:319762091" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103416" /translation="MTGWLLRRLAQAAVAVVLMTIIVFAGLHAIGNPVDILIGQDVDQ VERARIIAELGLDQPLWRQYLAFVNGALHGNLGTSFVYNVPAVTLILQRLPATLELAI AALLIAVAVGVPLGLFAGLFPEHPLSKLLMAGSIVGFSLPTFWVGLMLIMAFSVGLGW LPASGRGETVQLLGAQWSWPTLDGLRHLLLPAINLSLFKTSLVMRLTRANVREVMPME FVKFARAKGLSPMRVVLVHVLRNTLIPLVTVLGLELGSTIAFAVVTESIFAWPGAGKL ILDSINALDRPVIVAYLVVVVCLFVTLNLIVDILYKVLDPRVRLEGAA" misc_feature complement(1458608..1459519) /locus_tag="Alide_1379" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" misc_feature complement(1458722..1459198) /locus_tag="Alide_1379" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1458746..1458751,1458776..1458781, 1458788..1458799,1458818..1458820,1458827..1458832, 1458872..1458874,1458923..1458925,1458932..1458937, 1458947..1458949,1458953..1458958,1458965..1458967, 1458971..1458973,1458977..1458982,1459121..1459123, 1459127..1459132,1459139..1459168,1459172..1459183)) /locus_tag="Alide_1379" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1458782..1458799,1459121..1459165)) /locus_tag="Alide_1379" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1458746..1458748,1458755..1458757, 1458779..1458781,1458995..1458997,1459121..1459123)) /locus_tag="Alide_1379" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1458851..1458853,1458863..1458868, 1458884..1458922)) /locus_tag="Alide_1379" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1459570..1460568) /locus_tag="Alide_1380" /db_xref="GeneID:10103417" CDS complement(1459570..1460568) /locus_tag="Alide_1380" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rsc:RCFBP_11452 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126029.1" /db_xref="GI:319762092" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103417" /translation="MELRQLEAFAAVMSTGSVTAAGLLLGRSQPAVSRLVQELEAEIG YELFARNGPRVTPTEQGFLLYEDVEHALTGLQQIRRRAKEIEQGLRRPVRVVATTALA AGLVPQALARIEDGGAMGAIQLRSAAPERVVHDVLCGAAHLGVTSLPLEHRGLQVHWI GQAACVAVLPASDPLARLERVPLAALAQRQIVTMTNPYRLRHRLDAEFAEAGGATPRL IETNSSLNAMMMVRAGLGVAVLEPVTAHGVPLAGVVTRALDTDIPFLFGVVTRQAAPA QPSMDALMAALADAAAALLPGFMLHDAAAHGALLQQAAQDLARSGPAEPVQTGGAA" misc_feature complement(1459741..1460562) /locus_tag="Alide_1380" /note="DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986" /db_xref="CDD:182183" misc_feature complement(1460386..1460562) /locus_tag="Alide_1380" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1459735..1460247) /locus_tag="Alide_1380" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(1459870..1459875,1459879..1459884, 1459900..1459917,1460191..1460211,1460215..1460217, 1460227..1460229,1460236..1460241,1460245..1460247)) /locus_tag="Alide_1380" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(1460751..1461398) /locus_tag="Alide_1381" /db_xref="GeneID:10103418" CDS complement(1460751..1461398) /locus_tag="Alide_1381" /EC_number="3.5.1.9" /inference="protein motif:TFAM:TIGR03035" /note="TIGRFAM: arylformamidase; KEGG: dia:Dtpsy_2438 arylformamidase; PFAM: cyclase family protein" /codon_start=1 /transl_table=11 /product="arylformamidase" /protein_id="YP_004126030.1" /db_xref="GI:319762093" /db_xref="InterPro:IPR007325" /db_xref="InterPro:IPR017484" /db_xref="GeneID:10103418" /translation="MTRANPPRLWDISAPVHAASPVYPGDAPYRQQWSATIGPDSPVN VSCLMLSPHVGTHADAPLHYDNDGAAIGAVPLDAFIGPCRVVHAMGCGPLVQWRHIAH AMTADLPPRVLLRTYARMPVDRWDASLTACAPETLERLADAGVVLVGIDTASVDPADS RRLPSHQVLRRRGLRVLENLVLDAVPEGDYELIALPLRLVTADASPVRAVLRALA" misc_feature complement(1460757..1461377) /locus_tag="Alide_1381" /note="Putative cyclase; Region: Cyclase; cl00814" /db_xref="CDD:193946" gene complement(1461400..1461723) /locus_tag="Alide_1382" /db_xref="GeneID:10103419" CDS complement(1461400..1461723) /locus_tag="Alide_1382" /inference="protein motif:PFAM:PF03692" /note="PFAM: protein of unknown function UPF0153; KEGG: dia:Dtpsy_2436 protein of unknown function UPF0153" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126031.1" /db_xref="GI:319762094" /db_xref="InterPro:IPR005358" /db_xref="GeneID:10103419" /translation="MTLHPCLSCGACCASFRVDFSVHETEDLGGSVPRGLAVEVTEHT ARMRGTDHARPRCAALTGQVGQRAACGIYEWRPSPCREFEAGSEACNRARRRYQLPPL DGPVL" misc_feature complement(1461418..1461723) /locus_tag="Alide_1382" /note="Flagellin N-methylase; Region: FliB; cl00497" /db_xref="CDD:186037" gene 1461843..1462142 /locus_tag="Alide_1383" /db_xref="GeneID:10103420" CDS 1461843..1462142 /locus_tag="Alide_1383" /inference="protein motif:PFAM:PF04023" /note="PFAM: FeoA family protein; KEGG: dia:Dtpsy_2435 FeoA family protein" /codon_start=1 /transl_table=11 /product="feoa family protein" /protein_id="YP_004126032.1" /db_xref="GI:319762095" /db_xref="GO:0005506" /db_xref="InterPro:IPR007167" /db_xref="GeneID:10103420" /translation="MQQIGKGIAHGQPQGLDTLPRGVAATVAGLRQAQDAPTRAMVLR LMEIGFLPGEPVSVIAKGFPTADPLAVRVGQATFALRRHEAAQILVHVGAAEGAA" misc_feature 1461888..1462112 /locus_tag="Alide_1383" /note="FeoA domain; Region: FeoA; cl00838" /db_xref="CDD:193951" gene 1462139..1464079 /locus_tag="Alide_1384" /db_xref="GeneID:10103421" CDS 1462139..1464079 /locus_tag="Alide_1384" /inference="protein motif:TFAM:TIGR00437" /note="KEGG: dia:Dtpsy_2434 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein b" /protein_id="YP_004126033.1" /db_xref="GI:319762096" /db_xref="GO:0005525" /db_xref="GO:0015093" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR003373" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006073" /db_xref="InterPro:IPR011619" /db_xref="InterPro:IPR011640" /db_xref="InterPro:IPR011642" /db_xref="GeneID:10103421" /translation="MSRTQAAAAASLTHIALLGNPNCGKTALFNVLTGARQKVANYAG VTVERKEGVCTTAGGRRVRVLDLPGAYSLHAQSLDEAVTRDVVTGRRPGESVPELLVC VTDATHLRLNLRLVLEARELGLPMVLVLNMSDMARRQGIEIDREVLARELAMPVVATV GVRSDGADELLRWLDQAEPPRAAPQPAAAAALSAGLPPVNALEDDQPQRVQRLHQEVR RIMGLAVREPALRLQRDDRIDAVVLHPLWGMLLLAATLFLMFQAVFSWAEVPKGWIEG ATGALAEWLKAHMAEGPLRSLLADGVIAGVGGVVVFLPQILILFFFILALEESGYLPR AAFLLDRVMGVVGLSGRSFIPLLSSFACAVPGIMATRSIPDWRDRLVTILIAPLMTCS ARLPVYALLIAAFIPERTVAGLFNLQGLVLFGLYLGGIVSAMLVAAVARLARNWDGGG GGATPLLMELPAYRWPSVRNLALGLWERAGIFLRRVGGIILAVTVLLWFLSTYPAPPE GAAGPAIEYSLAGRLGSMLETIFAPIGFNWQISVALVPGMAAREVAVSALGTVYAIAA TADDTAAQLAPMLASQWSLATALSLLVWFIFAPQCVSTIAAVRRETNGWRWPLVMTVY LFALAYGASFITYRIALAFHGG" misc_feature 1462181..1464067 /locus_tag="Alide_1384" /note="Fe2+ transport system protein B [Inorganic ion transport and metabolism]; Region: FeoB; COG0370" /db_xref="CDD:30719" misc_feature 1462187..1462666 /locus_tag="Alide_1384" /note="Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this...; Region: FeoB; cd01879" /db_xref="CDD:133280" misc_feature 1462193..1462216 /locus_tag="Alide_1384" /note="G1 box; other site" /db_xref="CDD:133280" misc_feature order(1462202..1462204,1462208..1462219,1462529..1462534, 1462538..1462540,1462616..1462624) /locus_tag="Alide_1384" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133280" misc_feature 1462271..1462285 /locus_tag="Alide_1384" /note="Switch I region; other site" /db_xref="CDD:133280" misc_feature 1462274..1462276 /locus_tag="Alide_1384" /note="G2 box; other site" /db_xref="CDD:133280" misc_feature 1462334..1462345 /locus_tag="Alide_1384" /note="G3 box; other site" /db_xref="CDD:133280" misc_feature order(1462343..1462399,1462409..1462414) /locus_tag="Alide_1384" /note="Switch II region; other site" /db_xref="CDD:133280" misc_feature 1462529..1462540 /locus_tag="Alide_1384" /note="G4 box; other site" /db_xref="CDD:133280" misc_feature 1462616..1462624 /locus_tag="Alide_1384" /note="G5 box; other site" /db_xref="CDD:133280" misc_feature 1463114..1463353 /locus_tag="Alide_1384" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" misc_feature 1463399..1463572 /locus_tag="Alide_1384" /note="Ferrous iron transport protein B C terminus; Region: FeoB_C; pfam07664" /db_xref="CDD:191804" misc_feature 1463585..1463983 /locus_tag="Alide_1384" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" gene 1464081..1464326 /locus_tag="Alide_1385" /db_xref="GeneID:10103422" CDS 1464081..1464326 /locus_tag="Alide_1385" /inference="similar to AA sequence:KEGG:Daci_2177" /note="KEGG: dac:Daci_2177 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126034.1" /db_xref="GI:319762097" /db_xref="GeneID:10103422" /translation="MLQELIVVLIVAAAVAYVAWRYLPAAWRQRLGRVHPSLAQGPGG CGSGDGCSSCGGCSAAQGPTAEPPVQGRAERRFHASK" gene complement(1464386..1464733) /locus_tag="Alide_1386" /db_xref="GeneID:10103423" CDS complement(1464386..1464733) /locus_tag="Alide_1386" /inference="protein motif:PFAM:PF03692" /note="PFAM: protein of unknown function UPF0153; KEGG: ajs:Ajs_3004 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126035.1" /db_xref="GI:319762098" /db_xref="InterPro:IPR005358" /db_xref="GeneID:10103423" /translation="MPEPLHPCLTCGACCHEYRVEFPVYELQSMGGSVPDALAHEVNG NRWRMNGTGQRPVRCVALVGRCGEQSVCSIYAQRSSTCRNFEMGSQRCNEARQRHGLP PLDTPWDEFPLAA" misc_feature complement(1464422..1464718) /locus_tag="Alide_1386" /note="Flagellin N-methylase; Region: FliB; cl00497" /db_xref="CDD:186037" gene 1464833..1465042 /locus_tag="Alide_1387" /db_xref="GeneID:10103424" CDS 1464833..1465042 /locus_tag="Alide_1387" /inference="similar to AA sequence:KEGG:Pden_4005" /note="KEGG: pde:Pden_4005 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126036.1" /db_xref="GI:319762099" /db_xref="GeneID:10103424" /translation="MSERFKVGDHVSWNSEAGRVSGRIIAVHTSDFDYKGHPRRATPD DPQYEIRSDKTEHIAAHRGSVLQRL" misc_feature 1464854..1465039 /locus_tag="Alide_1387" /note="Protein of unknown function (DUF2945); Region: DUF2945; pfam11160" /db_xref="CDD:151602" gene 1465049..1465582 /locus_tag="Alide_1388" /db_xref="GeneID:10103425" CDS 1465049..1465582 /locus_tag="Alide_1388" /inference="similar to AA sequence:KEGG:BB2477" /note="KEGG: bbr:BB2477 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126037.1" /db_xref="GI:319762100" /db_xref="InterPro:IPR014519" /db_xref="GeneID:10103425" /translation="MAQPFFTIGHSNRSLEDFIALLREARVACLVDIRKMPRSRAQPQ FDGDGLGAALAGHGISYLHLAALGGLRGRTAGVPPGRNGLWRNPSFHRYADHAGTPAF HEGLEQLLAQGQDRSCALMCAEALWWRCHRRIVADHLLARGRAVFHIMAPGRVEPARL TPGAVVAEDGTVSYPLP" misc_feature 1465088..1465465 /locus_tag="Alide_1388" /note="Protein of unknown function, DUF488; Region: DUF488; cl01246" /db_xref="CDD:194077" gene complement(1465907..1466827) /locus_tag="Alide_1389" /db_xref="GeneID:10103426" CDS complement(1465907..1466827) /locus_tag="Alide_1389" /EC_number="2.1.3.3" /inference="protein motif:TFAM:TIGR00658" /note="TIGRFAM: ornithine carbamoyltransferase; KEGG: dia:Dtpsy_2430 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region" /codon_start=1 /transl_table=11 /product="ornithine carbamoyltransferase" /protein_id="YP_004126038.1" /db_xref="GI:319762101" /db_xref="GO:0004585" /db_xref="InterPro:IPR002292" /db_xref="InterPro:IPR006130" /db_xref="InterPro:IPR006131" /db_xref="InterPro:IPR006132" /db_xref="GeneID:10103426" /translation="MKHYLQFADLGADEYNYLFSRAAIIKGKFKSYEKYHPLADRTLA MIFEKASTRTRVSFEAGMYQMGGSVVHLTTGDSQLGRAEPIEDSARVISRMTDLVMIR TFGQDKIARFAEFSRVPVINGLTNEFHPCQIMADIFTYIEHRGSITGKTVAWVGDGNN MANTWLQAADLLGFTVHVSTPGGYEVDEKLAFGGKPHRPGCYKVFANPMDACRDADLV TTDVWTSMGYEAENEARRKAFADWCVDAEMMAVAKPDALFMHCLPAHRGEEVMADVID GPQSVVWDEAENRMHVQKALMEYLLLGRIA" misc_feature complement(1465925..1466827) /locus_tag="Alide_1389" /note="ornithine carbamoyltransferase; Provisional; Region: PRK00779" /db_xref="CDD:179122" misc_feature complement(1466399..1466824) /locus_tag="Alide_1389" /note="Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729" /db_xref="CDD:190401" misc_feature complement(1465928..1466383) /locus_tag="Alide_1389" /note="Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185" /db_xref="CDD:189438" gene complement(1466844..1468040) /locus_tag="Alide_1390" /db_xref="GeneID:10103427" CDS complement(1466844..1468040) /locus_tag="Alide_1390" /inference="protein motif:TFAM:TIGR00707" /note="KEGG: dia:Dtpsy_2429 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III" /codon_start=1 /transl_table=11 /product="acetylornithine and succinylornithine aminotransferase" /protein_id="YP_004126039.1" /db_xref="GI:319762102" /db_xref="GO:0008483" /db_xref="InterPro:IPR004636" /db_xref="InterPro:IPR005814" /db_xref="GeneID:10103427" /translation="MTALIEAASPHVMNTYGRVPIALERGQGVRVWDVNGKQYLDGLG GIAVNTLGHNHPRLVPALQEQIAKLIHTSNYYHVPGQEELARLLTGRARMTNAFFCNT GLEANECAIKIARKYGVDKGIEKPEIVVYDHAFHGRSIATMTATGNPKVRNGFGPLLE GFIRVAPNDIEALQEATEGNPNVVAVLMEPIQGEGGLHPMRVEYLQQVRKLCDANGWL LMLDEVQAGMGRTGKWFAHQWAGIVPDVMTLAKGLGSGVPVGAVLAHGAASEVLKPGN HGSTFGGNPLAMRAGVETIRIMEEEGLLQNAADVGAHLKAGLQQALGSVPGVNEVRGQ GLIIGVELDRPCGVLIDRAAQAGLLLSVTADRVIRLVPALTLTRAEADEIVALLTPLV QAFLAE" misc_feature complement(1466853..1468040) /locus_tag="Alide_1390" /note="acetylornithine aminotransferase; Provisional; Region: PRK02627" /db_xref="CDD:179453" misc_feature complement(1466877..1468031) /locus_tag="Alide_1390" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature complement(order(1467288..1467290,1467366..1467371, 1467375..1467377,1467474..1467476,1467627..1467629, 1467633..1467638,1467729..1467737)) /locus_tag="Alide_1390" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature complement(order(1467288..1467290,1467366..1467368, 1467375..1467377,1467474..1467476,1467633..1467638, 1467729..1467734)) /locus_tag="Alide_1390" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(1467288..1467290) /locus_tag="Alide_1390" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 1468278..1468592 /locus_tag="Alide_1391" /db_xref="GeneID:10103428" CDS 1468278..1468592 /locus_tag="Alide_1391" /inference="similar to AA sequence:KEGG:Dtpsy_2428" /note="KEGG: dia:Dtpsy_2428 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126040.1" /db_xref="GI:319762103" /db_xref="GeneID:10103428" /translation="MVAPTSKEVFIQGITHDGRTFRPSDWAERLAGVMSQFRPGGARP GSHLSYSPWCVPTAMNGVKCVVVNRELQAYEPMAWDFVLNFAKDNNLQVVEACLLPDP KA" misc_feature 1468281..1468574 /locus_tag="Alide_1391" /note="Protein of unknown function (DUF3579); Region: DUF3579; pfam12112" /db_xref="CDD:152547" gene complement(1468636..1469181) /locus_tag="Alide_1392" /db_xref="GeneID:10103429" CDS complement(1468636..1469181) /locus_tag="Alide_1392" /inference="similar to AA sequence:KEGG:Vapar_5710" /note="manually curated; KEGG: vap:Vapar_5710 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126041.1" /db_xref="GI:319762104" /db_xref="GeneID:10103429" /translation="MVICLLTPFCAVRIARAPRGPCWPAQSPRTPRPARMSRRRAASA GGILVARLMKRGVAGVVTDGGFRDSPDIARYSMPAYHSRPSAPTNLTLHEAIEINGPI GCGDAPVFPGDVIVGDAEGVVVIPAHMADGIAAEATEMTVFEDFVQEKVMEGRSILGL YPPIDERTRTDFAAWRQACGR" misc_feature complement(1468639..>1469049) /locus_tag="Alide_1392" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene complement(1469213..1469701) /locus_tag="Alide_1393" /db_xref="GeneID:10103430" CDS complement(1469213..1469701) /locus_tag="Alide_1393" /inference="similar to AA sequence:KEGG:Rfer_0842" /note="KEGG: rfr:Rfer_0842 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126042.1" /db_xref="GI:319762105" /db_xref="GeneID:10103430" /translation="MLTAYAGWDSPDFTFQDFRYFLNGKQIAGDSRSFVQRIESRGYS GPGEESIRVGDIVYVKWRHKPTGTVYENTIDLRGRLPAPIKEGGALYFVLAHETVHVY LVGPPQPWENRKPIYGCDKLKKIGKAEPTPDNRARAYNCADKVWKVYPEQKLINVPLE QP" gene complement(1470142..1470441) /locus_tag="Alide_1394" /db_xref="GeneID:10103431" CDS complement(1470142..1470441) /locus_tag="Alide_1394" /inference="protein motif:TFAM:TIGR00029" /note="KEGG: dia:Dtpsy_2427 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20" /codon_start=1 /transl_table=11 /product="ribosomal protein s20" /protein_id="YP_004126043.1" /db_xref="GI:319762106" /db_xref="GO:0003723" /db_xref="GO:0003735" /db_xref="InterPro:IPR002583" /db_xref="GeneID:10103431" /translation="MASGKPKKKNPRLASGRKRARQGLKLNAANTSLRSKYRTAVKNV EKAVLAGDKTKATELFAKAQSVLDTIADKGIFHKNKAARDKSRLSAKVKALALAA" misc_feature complement(1470190..1470411) /locus_tag="Alide_1394" /note="Ribosomal protein S20; Region: Ribosomal_S20p; cl00384" /db_xref="CDD:193796" gene 1470546..1472111 /locus_tag="Alide_1395" /db_xref="GeneID:10103432" CDS 1470546..1472111 /locus_tag="Alide_1395" /inference="protein motif:TFAM:TIGR01695" /note="KEGG: ajs:Ajs_2999 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein" /codon_start=1 /transl_table=11 /product="integral membrane protein mvin" /protein_id="YP_004126044.1" /db_xref="GI:319762107" /db_xref="InterPro:IPR004268" /db_xref="GeneID:10103432" /translation="MSLFKAASTVSLLTLASRVTGLVRDLLMASIFGANVLTDAFNVA FRIPNLFRRLFAEGAFSQAFVPVLAAHKARHGEEATRGLVDAVATALFWVLLLTCVLG AVGAPVLVWALASGLRQTAEGFDAAVFMTRWMFPYIGFMSLVALSAGVLNTWRRFAVP AATPVLLNLCMIAAAWLGAPQLERRGIEPIYAMVGGVMAGGVLQLAVQLPVLYRLGLL PRIGMTWGRVRSAWQDEGVRRILTLMAPALLGVGVAQVSLMINTQIASYLVPGSVTWL FYADRLMEFPTALLGVALGVVLTPQLAAARAAGDAERYSAMLDWGLRIVVLLAVPCAV GLLTFATPLVATLFHHGALHDGDVGQIAVALAGYGVGLLGLVAIKVLAPGYYASQDIR TPVRIAIVVLVATQAMNVALVPLLAHAGLALSIGLGALINALWLLAGLVRRGSFRPRP GWGRLALQVVGASALLAVFLAWASLHFDWLALRAHSVQRAGLLALLLCASALLYFGAL WACGLKLRDLLRR" misc_feature 1470546..1472108 /locus_tag="Alide_1395" /note="Uncharacterized membrane protein, putative virulence factor [General function prediction only]; Region: MviN; COG0728" /db_xref="CDD:31072" gene 1472128..1472976 /locus_tag="Alide_1396" /db_xref="GeneID:10103433" CDS 1472128..1472976 /locus_tag="Alide_1396" /inference="similar to AA sequence:KEGG:Ajs_2998" /note="KEGG: ajs:Ajs_2998 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126045.1" /db_xref="GI:319762108" /db_xref="GeneID:10103433" /translation="MPLSYSVPTPLEYFAALVQGGQEEGIALLEAAACIAHVEYPDVD VQQFLDDMDRLQARLQRRMPAGAAPLRRLNALNRFFYGELGFGGNLNDYYAPDNSYLH MVLRTRRGIPISLALLWLELAQGAGLKAQGVSFPGHFLVKVLMPAGQVVLDPMTGHVL SREALSERLEPFRLRQGAAQEEVPLGLYLQAAPARDVLARMLRNLKEIHGARQDWRRQ LAVQDRLVTLLPDAWGEWRDRGLAHAALGDARLAVQDLERYLAHAADAGDAQAIALRV KALRGS" misc_feature 1472248..1472895 /locus_tag="Alide_1396" /note="hypothetical protein; Provisional; Region: PRK10941" /db_xref="CDD:182854" gene complement(1472978..1473373) /locus_tag="Alide_1397" /db_xref="GeneID:10103434" CDS complement(1472978..1473373) /locus_tag="Alide_1397" /inference="protein motif:PFAM:PF00582" /note="PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_2423 UspA domain protein" /codon_start=1 /transl_table=11 /product="uspa domain-containing protein" /protein_id="YP_004126046.1" /db_xref="GI:319762109" /db_xref="InterPro:IPR006015" /db_xref="InterPro:IPR006016" /db_xref="GeneID:10103434" /translation="MTILVAYVPRPEGRAALDKGIEIATRRNERLVVVNAGPGGRQDD PNIVNGYEVERVEERLATLPIEAEFKQFVRGKSTIEEIEEMVSALQVSVLVIGLRKRS PVGKLLLGSMAQEILLNVACPVLAVKATS" misc_feature complement(1472993..1473370) /locus_tag="Alide_1397" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(1473035..1473046,1473074..1473079, 1473083..1473088,1473266..1473268,1473350..1473358)) /locus_tag="Alide_1397" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(1473605..1474690) /locus_tag="Alide_1398" /db_xref="GeneID:10103435" CDS complement(1473605..1474690) /locus_tag="Alide_1398" /inference="similar to AA sequence:KEGG:Dtpsy_2422" /note="KEGG: dia:Dtpsy_2422 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126047.1" /db_xref="GI:319762110" /db_xref="GeneID:10103435" /translation="MPSELPPQGSPESPPAHRQAWAPATRGVVIASYLLMAGTLLLVM LRGLLPGLLCVCLGFLLTRWLAPRLVRLRRLGPRGRGFSHSGQSMAAALVMLSPLLLL ALALSHSRTYIVDAPQQYRELLDYLARTVLELRLKLPPDIAAQLPAGTAEIQHVIASY LAAKAGALAMAGRAWLTGLLYAYVGLLIGALAAVRGTGTRRGPLTQQLVLRVARMGEA FRQIVAAQFWIAAFNTLLTALFLLVVLPLWDLGLPYTPALITLTFLAGLVPIVGNLLC NAVITLVGLSVSPIAAVACLAFLILIHKAEYVINAKVVGKRTHMGVWELLSVMFVTEA VFGPAGLVAAPLFYAYLKKELKAARLV" misc_feature complement(1473614..>1473934) /locus_tag="Alide_1398" /note="Domain of unknown function DUF20; Region: UPF0118; cl00465" /db_xref="CDD:186015" gene complement(1474724..1475764) /locus_tag="Alide_1399" /db_xref="GeneID:10103436" CDS complement(1474724..1475764) /locus_tag="Alide_1399" /EC_number="6.3.3.1" /inference="protein motif:TFAM:TIGR00878" /note="TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ajs:Ajs_2994 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine cyclo-ligase" /protein_id="YP_004126048.1" /db_xref="GI:319762111" /db_xref="GO:0004641" /db_xref="InterPro:IPR000728" /db_xref="InterPro:IPR004733" /db_xref="InterPro:IPR010918" /db_xref="GeneID:10103436" /translation="MSSSATPPISYKDAGVDIDAGDALVERIKPLAKKTLREGVMAGI GGFGALFEVPKRYLEPVLVSGTDGVGTKLKLAFEWNMHDTVGIDLVAMSVNDVLVQGA EPLFFLDYFACGKLDVDTAAAVVGGIAKGCELSGCALIGGETAEMPGMYPAGEYDLAG FAVGAVEKSRILTGKDVAAGDVVLGLASSGVHSNGFSLVRKCIERAGADLPATLDGKP FRQAVMEPTRLYVKNVLAALQQHPIKALAHITGGGLLENIPRVLPEGTAARLKAGSWP RTELFAWLQKTAGIDDIEMNRTFNNGIGMVVVVPAAAAEATAATLRALGEAVYAIGTI AERGTGPAVVVD" misc_feature complement(1474763..1475740) /locus_tag="Alide_1399" /note="phosphoribosylaminoimidazole synthetase; Provisional; Region: PRK05385" /db_xref="CDD:180049" misc_feature complement(1474763..1475641) /locus_tag="Alide_1399" /note="PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine...; Region: PurM; cd02196" /db_xref="CDD:100032" misc_feature complement(order(1474985..1474987,1475282..1475284, 1475294..1475299,1475318..1475320,1475324..1475326, 1475336..1475338,1475429..1475431,1475438..1475440, 1475447..1475449,1475465..1475467,1475477..1475479, 1475543..1475545,1475561..1475563,1475567..1475569, 1475573..1475584,1475612..1475626)) /locus_tag="Alide_1399" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100032" misc_feature complement(order(1475336..1475344,1475477..1475479)) /locus_tag="Alide_1399" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:100032" gene complement(1475921..1477873) /locus_tag="Alide_1400" /db_xref="GeneID:10103437" CDS complement(1475921..1477873) /locus_tag="Alide_1400" /EC_number="2.3.2.2" /inference="protein motif:TFAM:TIGR00066" /note="TIGRFAM: gamma-glutamyltransferase; KEGG: aci:ACIAD0929 gamma-glutamyltranspeptidase precursor; PFAM: gamma-glutamyltranspeptidase" /codon_start=1 /transl_table=11 /product="gamma-glutamyltransferase" /protein_id="YP_004126049.1" /db_xref="GI:319762112" /db_xref="GO:0003840" /db_xref="InterPro:IPR000101" /db_xref="GeneID:10103437" /translation="MRKRMLWIMAPLAAAAFLASCGGGHGQLPVVDNDPDSCTVRSSG GAPIVVGSGVSGDPAAPENASGYRLGLTAKYSSKYMVVANTPLATKAGCDVLKAGGSA VDAAVAMQAVLGLVEPQSSTIAGSAFMMYYDAKARKVTAYDGREAAPAAATGYYLSRQ DQGDPGSSAPVPSARRSGRSIGVPGVMRMLDMAHKEHGMLAWSGLFDYGIKLSTDGFQ IPGRLGAAIASNAGNLALDANAMATYFHADGSPRTTGETMTNLPYAKTLKTLATQGAD ALYTGDLAKAIVAKAAQSVGDDGAKTPITPSLMTLADLAGYKAKKRDPVCASYRSAYY VCTMAPPSSGGIAIAQSLGILGQFNLAQYGLANPANEGGVPSVMGVHLVSEAERLAYA DRDKYVADTDFVPLPAQGLSSLLSPDYLRQRASLISPDRSMGTAAAGDFGPVPQGVDK TVEHGTTHFSVVDAYGNVVSMTTTVESSMGSFHMVEGFLLTNQLTDFSASPVDGSGQP VANRVAPGKRPRSTMAPTLVFKGSAPGDFVMATGSPGGGAIIQYVMKTVVGALDWGLD AQQATSLVNFGATNSPTTGVDGSNTTLDLAALVDGLKAKGHTVSTSAQSSGVATIMRV TKNGRTLLEGGADPRREGIVLGDGSL" sig_peptide complement(1477793..1477873) /locus_tag="Alide_1400" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.950) with cleavage site probability 0.928 at residue 27" misc_feature complement(1475933..1477660) /locus_tag="Alide_1400" /note="Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; cl08040" /db_xref="CDD:186741" misc_feature complement(1475948..1477597) /locus_tag="Alide_1400" /note="Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019" /db_xref="CDD:144562" gene 1478196..1478903 /locus_tag="Alide_1401" /db_xref="GeneID:10103438" CDS 1478196..1478903 /locus_tag="Alide_1401" /inference="protein motif:TFAM:TIGR03420" /note="KEGG: aav:Aave_1971 chromosomal replication initiator, DnaA; TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA" /codon_start=1 /transl_table=11 /product="dnaa regulatory inactivator hda" /protein_id="YP_004126050.1" /db_xref="GI:319762113" /db_xref="InterPro:IPR013317" /db_xref="InterPro:IPR017788" /db_xref="GeneID:10103438" /translation="MSPMRQLALDIGLAPVPTLARFFAGPNEAALQHLRLAVEGASGG ALRSCLPVYLWGEAGSGKTHLLKAVQEALRTQGVRVGWMQASTENPPAFDEDWAAVLL DEVHLYSTGQQAAAFNWFVNATSPATGAPRWVLAAGDLPPADLPLRDDLRSRLGWGHV FQLHLLDEPARRAVLRQEADARGVFLGDEVMDYMLKRFSRDLGSLVQLLDRLDSFALR TQRAITIPLLKTMLETE" misc_feature 1478211..1478894 /locus_tag="Alide_1401" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 1478900..1479574 /locus_tag="Alide_1402" /db_xref="GeneID:10103439" CDS 1478900..1479574 /locus_tag="Alide_1402" /inference="protein motif:TFAM:TIGR01490" /note="KEGG: dia:Dtpsy_2419 HAD-superfamily subfamily IB hydrolase, TIGR01490; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="had-superfamily subfamily ib hydrolase, tigr01490" /protein_id="YP_004126051.1" /db_xref="GI:319762114" /db_xref="GO:0016791" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006383" /db_xref="InterPro:IPR006385" /db_xref="GeneID:10103439" /translation="MRLALFDLDHTLLPLDSDYEWGEFTIRIGWTDREEFGRRNKAFY DDYVAGRLDVHDYVRFATEAVRQRGAQAAARAHAQFMRDVIAPAIHDEARALLQRHRD AGDEIVIITATNEFITRPIAQALGVQQLLALELERGADGWITGGIRGVPTMREGKVRR MEQWLAERGLRWQDVDSTFYSDSMNDVPLLEKVDHPVATNPDPRLRVLARERGWPILD LFPSQQ" misc_feature 1478900..1479547 /locus_tag="Alide_1402" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 1479571..1481139 /locus_tag="Alide_1403" /db_xref="GeneID:10103440" CDS 1479571..1481139 /locus_tag="Alide_1403" /inference="protein motif:TFAM:TIGR01942" /note="KEGG: dia:Dtpsy_2418 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region" /codon_start=1 /transl_table=11 /product="poly(a) polymerase" /protein_id="YP_004126052.1" /db_xref="GI:319762115" /db_xref="GO:0003723" /db_xref="GO:0004652" /db_xref="InterPro:IPR002646" /db_xref="InterPro:IPR010206" /db_xref="GeneID:10103440" /translation="MIKTFIDKLLGKGAAGAGRGARRRFGKREEVPASVHGIDPELVD RRATDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRAFIIG KRFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVSGNEKTSKAQLSGMQHAVDASG RVLRDNVWGPQDEDATRRDFTVNAMYYDPETQVVVDFHKGIEDAKRRVLRMIGDPATR YREDPVRIIRAVRFAAKLSPLGFALEPKTAKPLLACEPLLQEVPQSRLFDEMLKLLQT GHALASVAQLRGLGLEKGIYPLLDVVVGRADQPFVQAALADTDRRVGEGKTVAPSFLL ACVLWQDVKAGWEQRLAAQQHAFPALQEAIDDVFDKRIGDVSGRGKLAADMREIWVMQ PRFEKRSGSTPFSMIAHIRFRAGFDFLRLRADVGEVEEGLAEWWQEFSLADDARREDM IDQVREEQRVRQRKAQPAARRAPRAAEAVADAPSEEEAAPADAAAPKKRRRRRRKSPA GGANGGPASAAGDA" misc_feature 1479661..1480923 /locus_tag="Alide_1403" /note="poly(A) polymerase; Region: pcnB; TIGR01942" /db_xref="CDD:130997" misc_feature 1479709..1480188 /locus_tag="Alide_1403" /note="Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398" /db_xref="CDD:143388" misc_feature order(1479763..1479768,1479775..1479780,1479805..1479807, 1479811..1479813,1479883..1479885,1479934..1479936, 1479949..1479951,1480099..1480110,1480117..1480119) /locus_tag="Alide_1403" /note="active site" /db_xref="CDD:143388" misc_feature order(1479763..1479768,1479775..1479777,1479805..1479807, 1479811..1479813,1480099..1480107,1480117..1480119) /locus_tag="Alide_1403" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143388" misc_feature order(1479805..1479807,1479811..1479813,1479934..1479936) /locus_tag="Alide_1403" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143388" misc_feature 1480288..1480470 /locus_tag="Alide_1403" /note="Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627" /db_xref="CDD:193105" misc_feature 1480618..1480926 /locus_tag="Alide_1403" /note="Polymerase A arginine-rich C-terminus; Region: PolyA_pol_arg_C; pfam12626" /db_xref="CDD:193104" gene 1481136..1481654 /locus_tag="Alide_1404" /db_xref="GeneID:10103441" CDS 1481136..1481654 /locus_tag="Alide_1404" /EC_number="2.7.6.3" /inference="protein motif:TFAM:TIGR01498" /note="TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: ajs:Ajs_2990 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK" /codon_start=1 /transl_table=11 /product="2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase" /protein_id="YP_004126053.1" /db_xref="GI:319762116" /db_xref="GO:0003848" /db_xref="InterPro:IPR000550" /db_xref="GeneID:10103441" /translation="MSPAPAIGEADGAAVTAWIGLGANLGDARAALRGAVWAMGALPD TRVLRVSSLYRSAPVDAGGPDYLNAVAELRTCLAPLRLLHALQAIEQAAGRERPYRNA PRTLDLDLLLYGEQRLGGAELTVPHPRMWERAFVLLPLAELRPGWVAPARLQAVAAQR IERVDAPADWKD" misc_feature 1481184..1481564 /locus_tag="Alide_1404" /note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483" /db_xref="CDD:29601" misc_feature order(1481199..1481201,1481301..1481306,1481310..1481312, 1481331..1481333,1481337..1481339,1481382..1481384, 1481394..1481396,1481403..1481405,1481418..1481420, 1481424..1481426,1481436..1481438,1481445..1481447, 1481454..1481456,1481460..1481465,1481505..1481507, 1481514..1481519,1481532..1481534,1481538..1481540) /locus_tag="Alide_1404" /note="catalytic center binding site [active]" /db_xref="CDD:29601" misc_feature order(1481382..1481384,1481394..1481396,1481403..1481405, 1481418..1481420,1481424..1481426,1481445..1481447, 1481460..1481465,1481505..1481507,1481514..1481519, 1481532..1481534) /locus_tag="Alide_1404" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29601" gene 1481850..1482830 /locus_tag="Alide_1405" /db_xref="GeneID:10103442" CDS 1481850..1482830 /locus_tag="Alide_1405" /inference="protein motif:PFAM:PF00535" /note="PFAM: glycosyl transferase family 2; KEGG: bav:BAV2928 bactoprenol glucosyl transferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_004126054.1" /db_xref="GI:319762117" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10103442" /translation="MAASHEAAVQRALPSISCVVPCYNEADNLENLLPLLSARLASLA PQWEIVLVDDGSTDATGERMDRWIRQPGVHALQLSRNFGKEAALTAGLEAAAGAVVVM MDSDMQHPPALLDTFVRHWRAGADVVYAVREHRDAETAFKRVGTGWFYRLINHGDRFE VPQGAGDFRLMDRRVVQALLALPERNRFMKGLYAWVGFESVAVPYLPDERQHGRSYFN KLRLLRLAFAGLTAFTVWPLRAVIALGFVLALAAFGYGAYLTLVYLLYGHDVSGWTTI VVSLMLFVGIQLVSLGVVGEYVGRIYEEVKRRPLYVVKRELGQGLRKDEA" misc_feature 1481895..1482806 /locus_tag="Alide_1405" /note="undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714" /db_xref="CDD:182669" misc_feature 1481901..1482443 /locus_tag="Alide_1405" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature order(1481910..1481912,1481916..1481918,1482165..1482167) /locus_tag="Alide_1405" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133030" misc_feature order(1482009..1482011,1482162..1482167) /locus_tag="Alide_1405" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature 1482159..1482167 /locus_tag="Alide_1405" /note="DXD motif; other site" /db_xref="CDD:133030" gene 1482827..1484404 /locus_tag="Alide_1406" /db_xref="GeneID:10103443" CDS 1482827..1484404 /locus_tag="Alide_1406" /inference="protein motif:PFAM:PF02366" /note="PFAM: glycosyl transferase family 39; KEGG: dac:Daci_2190 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 39" /protein_id="YP_004126055.1" /db_xref="GI:319762118" /db_xref="GO:0000030" /db_xref="InterPro:IPR003342" /db_xref="GeneID:10103443" /translation="MRAAASRTAWQGSLAVLALTFAWLAATAWMRPLMLPDEGRYATV AWEMLRSGDWLTPALDGMPFFHKPPLFYWITGAALSVAGLTEIAARAASLVGATLGAF SLYLFTQRWSGGAAARRVLVLLLVQPLFFAGGQFANLDMLVAGCITATVLALAHAALC FEQGLAYRRVLWLAYGLAALGVLAKGLIGFVIPAMVVGLWLVLRRRWRTVAALLSLPG LVLFLAVAAPWFVAMQQRFDGFLHYFFVVQHFQRFAAGGFNNAQPFWFYPVVVAVFSL PAILWVRGVFARGYFTAGGVHGAVRLLMALAVGCVLLFFSLPQSKLLGYILPAVPPLA WLIADASMRANESASRRNRWRATLACGALLGLGLVAGLAASQYHSTRGLGLALREHHQ PGEPVFMLKAYPYDVPFYARLREPAFVVDDWNSPDVARRDNWRKEVADAGAFAPLLAQ RLLLTPEALPAALCREGVAWVVGASQLNEHYAFLEQAQVMYMDRGESLWRVDARKGAL ATALDCAERPNGGSAGR" misc_feature 1482917..>1483888 /locus_tag="Alide_1406" /note="4-amino-4-deoxy-L-arabinose transferase; Provisional; Region: arnT; PRK13279" /db_xref="CDD:183943" gene complement(1484352..1484762) /locus_tag="Alide_1407" /db_xref="GeneID:10103444" CDS complement(1484352..1484762) /locus_tag="Alide_1407" /inference="protein motif:PFAM:PF04138" /note="PFAM: GtrA family protein; KEGG: dar:Daro_2757 GtrA-like protein" /codon_start=1 /transl_table=11 /product="gtra family protein" /protein_id="YP_004126056.1" /db_xref="GI:319762119" /db_xref="InterPro:IPR007267" /db_xref="GeneID:10103444" /translation="MSRRSTRLQHGRIGWFIVVGCAAAAVHWCVATSLVALAGWPPLR ANVAGWLVALGVSFTGHHRLSFRGHGSSIGRAGLRFFAISAGGFLVNESAYALLLRWT SVRYDVLLAAVLVGVAGVTYLLSRHWAFLRSPVP" sig_peptide complement(1484646..1484762) /locus_tag="Alide_1407" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.980 at residue 39" misc_feature complement(1484373..1484720) /locus_tag="Alide_1407" /note="GtrA-like protein; Region: GtrA; cl00971" /db_xref="CDD:193991" gene 1484781..1485635 /locus_tag="Alide_1408" /db_xref="GeneID:10103445" CDS 1484781..1485635 /locus_tag="Alide_1408" /inference="protein motif:PFAM:PF04794" /note="PFAM: YdjC family protein; KEGG: vap:Vapar_5574 YdjC family protein" /codon_start=1 /transl_table=11 /product="ydjc family protein" /protein_id="YP_004126057.1" /db_xref="GI:319762120" /db_xref="InterPro:IPR006879" /db_xref="GeneID:10103445" /translation="MGHETPQHSSWRHISICVDDFGLHEGINEAVFALTRQGRVQAVS AMVGGRAWEEGARALRTLDPRRVEVGLHLDLTECPLQPALRTPLGRLIARAYLRRLDA ADLRTEIRAQLDAFERAMGRAPAYVDGHQHVHQLPVVRTLLLQELARRYPAGGLWLRA THSPQGAAHADARTGFKSHVIAFLGARALSALARRQGLRQNARLLGVYDFTGGAQQYR ARLGRWLRAARDGDLLMCHVGLPAQAPDVLARARQDEFAVIAAPDFETLLQGTRVRLR PMGQMLCQ" misc_feature 1484814..1485587 /locus_tag="Alide_1408" /note="YdjC-like protein; Region: YdjC; cl01344" /db_xref="CDD:186421" gene complement(1485693..1486664) /locus_tag="Alide_1409" /db_xref="GeneID:10103446" CDS complement(1485693..1486664) /locus_tag="Alide_1409" /inference="similar to AA sequence:KEGG:Ajs_2989" /note="KEGG: ajs:Ajs_2989 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126058.1" /db_xref="GI:319762121" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10103446" /translation="MNRRSILLTAAALGAALATPMGHAQDGPIRLVVPYAPGGPIDVT ARALAERVRDSLGVVVVDNKAGAGGNIGADLVAKSAPDGLTIGIAATATHAVNPWLYS RMPYDAAKDFAGITQMVRVPNVLVVNAARAEQLKIRTVQDLIAYARANPGKLNYGSGG NGSAGHLAGEMFKQKAGIYALHIPYRGASPAQLALLAGEVDFNIDNLAAAAPNIKAGK LKALAVTSLAASPMLPGVPPLSDTFKGFSIDTWWGLVAPAGTPKPVIARLNKAFTDAL KAPETKTRFEALMAEPVPTSPEQFDTFMAAERAKYQSVVKASGAKVD" sig_peptide complement(1486590..1486664) /locus_tag="Alide_1409" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" misc_feature complement(1485705..1486532) /locus_tag="Alide_1409" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1486714..1487697) /locus_tag="Alide_1410" /db_xref="GeneID:10103447" CDS complement(1486714..1487697) /locus_tag="Alide_1410" /inference="similar to AA sequence:KEGG:Reut_B5440" /note="KEGG: reu:Reut_B5440 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126059.1" /db_xref="GI:319762122" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103447" /translation="MRNSLFSLALAGTLATGLAAPASAAEWPAADKPIQIIVPAPGGG GTGDTIARLMADRLGKRLKASVIVDNRGGANGNIGASAAATAPADGSRLLFSWAGTLA VNPSLYRGLPFDPQKSFAPIALVADVPNILVVNNELPVRDLAEFIHFAKANPGRLNYG STGNGSSMHLAGELFKRETGAQLVHVPYAAPGQATTNLMANEIQAMFQLVPGVVGQVK AGRLKALAVMSPTRSPALADVPTTAELGHPKLLSSTWFALLAPKGTPAAILDRLNTEV NEILQDPEVRKSLADMGAAPLGGSRQALAEHLAAETSKWARVVKESGVQVQ" sig_peptide complement(1487623..1487697) /locus_tag="Alide_1410" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.964 at residue 25" misc_feature complement(1486723..1487607) /locus_tag="Alide_1410" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1486729..1487550) /locus_tag="Alide_1410" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1487750..1488760) /locus_tag="Alide_1411" /db_xref="GeneID:10103448" CDS complement(1487750..1488760) /locus_tag="Alide_1411" /inference="similar to AA sequence:KEGG:Reut_B5441" /note="KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase" /codon_start=1 /transl_table=11 /product="uroporphyrinogen decarboxylase" /protein_id="YP_004126060.1" /db_xref="GI:319762123" /db_xref="GeneID:10103448" /translation="MQPMNHWQRIEAAIGGEATDRPPIALWRHFPEDDLHPDKLVAHT LQWQDKWQFDLVKFMPSGTYGVEDWGAVSAYRGAANGAREVVQPAVLRTEDWRRIAPL DVRQGSYGRQNEALAAAARGLGGRVPLLQTVFSPLTTARKMSTEKMFADLRCFPDELE RALMVITEVTIRFALDALALGAHGVFFATQQASHRLLSTAEYERFGKRYDLMVFEALR DKARFNMLHAHGDDIMFDLLSDYPAEMFNWHDRLTDPTIAQAAERFPRLLVGGIDEHG TLLRGSERDIEDQVHEALSQAAGRRLMIGPGCVLPVAATDASIRAAVRATHQFQEGLA CA" misc_feature complement(1487777..1488727) /locus_tag="Alide_1411" /note="The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine...; Region: URO-D_CIMS_like; cl00464" /db_xref="CDD:193829" gene complement(1488971..1489888) /locus_tag="Alide_1412" /db_xref="GeneID:10103449" CDS complement(1488971..1489888) /locus_tag="Alide_1412" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reu:Reut_B5443 regulatory protein, LysR:LysR, substrate-binding" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126061.1" /db_xref="GI:319762124" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103449" /translation="MQKLMHYSLVDIRLFVAVADAGNVSRGAAHCFLAPSSASLRIKQ LEESLGTRLFVREARGVSLTRAGQVMLEHCRRCLAELEQMHANLAPYAEGVKSHVTLF ANSTAIASYLPEDLSVFLRAYPAVRVSLEERLSHEIVAAVAEGRADIGVVTWSDEHPD VTFWPYHEDELVIVAPAATELGQDGKVRFVECLAHPIVSLASGTAIHTFIAGKAAALG YPIDVRIQVAGFSAVVALVRSGAGIAIVPRSVMRNLQDDGVRTLTLLEPWAVRQLSVC ARSDEKLLSSHALALLQQLRGAYRGPAAG" misc_feature complement(1489046..1489867) /locus_tag="Alide_1412" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1489685..1489864) /locus_tag="Alide_1412" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1489046..1489597) /locus_tag="Alide_1412" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(1489172..1489177,1489181..1489186, 1489202..1489219,1489493..1489513,1489517..1489519, 1489529..1489531,1489538..1489543,1489547..1489552)) /locus_tag="Alide_1412" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 1490005..1491153 /locus_tag="Alide_1413" /db_xref="GeneID:10103450" CDS 1490005..1491153 /locus_tag="Alide_1413" /inference="protein motif:PFAM:PF00291" /note="PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: hch:HCH_06702 cysteine synthase" /codon_start=1 /transl_table=11 /product="pyridoxal-5'-phosphate-dependent protein beta subunit" /protein_id="YP_004126062.1" /db_xref="GI:319762125" /db_xref="GO:0003824" /db_xref="GO:0030170" /db_xref="InterPro:IPR001926" /db_xref="GeneID:10103450" /translation="MPSIQVTSRSWVLEAVRRIERDFQRSSDTHLLQLDLPAMPQVRL YLKDESTHPTGSLKHRLARSLFLYGLCNGWIREGTTIVEASSGSTAVSEAYFARLLGL PFVAVMPRGTSAAKIAQIEFYGGRCHFVGSSAQLYAEAERLARECNGHYMDQFTYAER ATDWRGNNNIAESIFQQMRGEPHPTPAWIVVGAGTGGTSATIGRYIRYQGCATQLCVV DPEHSVFHSYFHHRDASITSARGSDVEGIGRPRVEPSFVPDVIDRMERVPNAASYAAM RVLQRLVGRRYGGSTGTDFYVAMQLACEMAQRNQAGSIVALACDSGDRYMDSYYDDAW LASNHYDIAPYVAQLEEAWLRGVWRDGGGSRPAAQPSASEAAALAAAG" misc_feature 1490059..1490985 /locus_tag="Alide_1413" /note="Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031" /db_xref="CDD:30381" misc_feature 1490089..1490985 /locus_tag="Alide_1413" /note="Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD)...; Region: Trp-synth-beta_II; cl00342" /db_xref="CDD:197407" misc_feature order(1490173..1490178,1490266..1490268,1490584..1490598, 1490872..1490874,1490959..1490964) /locus_tag="Alide_1413" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:107202" misc_feature 1490176..1490178 /locus_tag="Alide_1413" /note="catalytic residue [active]" /db_xref="CDD:107202" gene complement(1491160..1492221) /locus_tag="Alide_1414" /db_xref="GeneID:10103451" CDS complement(1491160..1492221) /locus_tag="Alide_1414" /inference="protein motif:PFAM:PF00175" /note="PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: dia:Dtpsy_2414 CDP-6-deoxy-delta-3,4-glucoseen reductase" /codon_start=1 /transl_table=11 /product="oxidoreductase fad/nad(p)-binding domain protein" /protein_id="YP_004126063.1" /db_xref="GI:319762126" /db_xref="GO:0009055" /db_xref="GO:0016491" /db_xref="GO:0051536" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR001221" /db_xref="InterPro:IPR001433" /db_xref="InterPro:IPR001709" /db_xref="InterPro:IPR006058" /db_xref="InterPro:IPR008333" /db_xref="InterPro:IPR017927" /db_xref="GeneID:10103451" /translation="MTSAQTAEATFQITVQPSGRAFEAQAGEPILTAAIRSGVGLPYG CKDGACGSCKCKRLSGSVVHGEHQHKALSVEEEEAGYVLTCCAKPLTDVVLESRQVTD ESAYPIRKLPVRVSALTRASHDVMQVRLQLPANDSFRYHAGQYIEFILRDGARRAYSM ATAPHMQESAPGVELHIRHMPGGKFTTHVFGDMKEKEILRVEGPFGSFFLREDSDKPM VFLASGTGFAPIKALIEHMQHKGIVRPATLYWGGRRPQDLYMDGWVRERLAAMPQLRY VPVVSDALPEDGWTGRTGFVHQAVMEDIADLSGHQVYACGAPIVVDSARRDFVQQAGL PEYEFYADAFTSEADKLAG" misc_feature complement(1491172..1492197) /locus_tag="Alide_1414" /note="CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated; Region: PRK07609" /db_xref="CDD:181058" misc_feature complement(1491934..1492188) /locus_tag="Alide_1414" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature complement(order(1491967..1491972,1492063..1492074, 1492078..1492080,1492087..1492089,1492096..1492101)) /locus_tag="Alide_1414" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature complement(order(1491967..1491969,1492063..1492065, 1492072..1492074,1492087..1492089)) /locus_tag="Alide_1414" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature complement(1491190..1491882) /locus_tag="Alide_1414" /note="NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD...; Region: flavin_oxioreductase; cd06189" /db_xref="CDD:99786" misc_feature complement(order(1491190..1491192,1491196..1491198, 1491538..1491540,1491547..1491549,1491664..1491672, 1491682..1491684,1491688..1491696,1491745..1491756, 1491787..1491789)) /locus_tag="Alide_1414" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99786" misc_feature complement(order(1491745..1491750,1491754..1491756)) /locus_tag="Alide_1414" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99786" misc_feature complement(order(1491604..1491606,1491610..1491612, 1491634..1491636,1491655..1491657,1491664..1491666, 1491673..1491675)) /locus_tag="Alide_1414" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99786" misc_feature complement(order(1491535..1491537,1491541..1491552, 1491562..1491564)) /locus_tag="Alide_1414" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99786" misc_feature complement(order(1491271..1491276,1491463..1491471, 1491544..1491549)) /locus_tag="Alide_1414" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99786" gene 1492290..1493231 /locus_tag="Alide_1415" /db_xref="GeneID:10103452" CDS 1492290..1493231 /locus_tag="Alide_1415" /inference="protein motif:PFAM:PF02254" /note="PFAM: TrkA-N domain protein; KEGG: ajs:Ajs_2986 NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="trka-n domain protein" /protein_id="YP_004126064.1" /db_xref="GI:319762127" /db_xref="InterPro:IPR003148" /db_xref="GeneID:10103452" /translation="MPSNQNPLGALPARFRRQRLLIIGCGDVGLRVARSLGAGGPRPR VLALTSSPARVPQLRAAGVMPLVGNLDDAASLARLAGLATRVLHLAPPPGEGAVGPRW WLDRRSTALVRVLRRRALPQALVYASTSGVYGDCAGEWVAESRPVAPATPRAQRRVNA ERAVRHLGRAGVRASILRVPGIYAPDREGGTPEARLRRGTPVLAAPDDVYTNHIHADD LARACVAALWRGRPQRAYNVADDSQLKMGDYFDLAANLYGLPRPPRVARSLAQQQLPL SLLSFMGESRRLVTTRMARELRLRLRYPTVREGLQRG" misc_feature 1492347..1493180 /locus_tag="Alide_1415" /note="atypical (a) SDRs, subgroup 4; Region: SDR_a4; cd05266" /db_xref="CDD:187576" misc_feature order(1492359..1492361,1492365..1492373,1492434..1492442, 1492551..1492559,1492668..1492676,1492746..1492748, 1492758..1492760,1492824..1492835) /locus_tag="Alide_1415" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187576" gene complement(1493219..1493851) /locus_tag="Alide_1416" /db_xref="GeneID:10103453" CDS complement(1493219..1493851) /locus_tag="Alide_1416" /inference="similar to AA sequence:KEGG:Dtpsy_2412" /note="KEGG: dia:Dtpsy_2412 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126065.1" /db_xref="GI:319762128" /db_xref="GeneID:10103453" /translation="MSISLQPAAHMALAMAIAACCALPAAAQVMRCTDPATGKVTYTD GDCGRGEAAREVEARKSPQEIEQEREQAAKALERKHERQQMEARQRRETQQAERSARP AAGSDPARSMECQRARKSLQDVLATMGQGMYDEQARLDAAQRQADLACLSHAEYARAE RSRGYRSVPSYYGPPMVVVPPRPAAPAPRREITHCNVFRCYDAQGNTYPR" sig_peptide complement(1493768..1493851) /locus_tag="Alide_1416" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.982 at residue 28" gene complement(1493886..1494410) /locus_tag="Alide_1417" /db_xref="GeneID:10103454" CDS complement(1493886..1494410) /locus_tag="Alide_1417" /inference="similar to AA sequence:KEGG:Dtpsy_2411" /note="KEGG: dia:Dtpsy_2411 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126066.1" /db_xref="GI:319762129" /db_xref="GeneID:10103454" /translation="MPLFHPLPSRTAAACMLGLLAAGCVAVPGDPYYDGGGYYSGSSS MTVYEQPGVIYTAPPLGWRDYPPPPPGWREDAWRERQWREAQQRRDAQRREFDRRREA DRREAERWETDRRREMERRAKEERLLQHPDPNVVRARREQFERERRAEMEAERERRNQ GMDQRPGGPRPDWR" sig_peptide complement(1494330..1494410) /locus_tag="Alide_1417" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.992 at residue 27" gene 1494538..1495626 /locus_tag="Alide_1418" /db_xref="GeneID:10103455" CDS 1494538..1495626 /locus_tag="Alide_1418" /inference="protein motif:PFAM:PF01609" /note="KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase is4 family protein" /protein_id="YP_004126067.1" /db_xref="GI:319762130" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002559" /db_xref="GeneID:10103455" /translation="MRGSQDFQGAMFSYISLEERVPQAHPLRKLRAVVDALLATMNRE FEAVYARRGRPSVPPEMLLKALLLQILFSIRSERQLVEAINYNLLYRWFVGLNIEDKV WDHSTFSANRERLFNEDLARAFFERVKLSAQWGKLASDEHFSVDGTLIDAWASHKSFK RKDDDSGTPPGRNPEVDFKGQERCNDTHESTTDADARLFKKSQGDKSRLCHMGHILME NRNGLIVDVEITHASGTAEREAALAMLERRGNRNKRATVGADKGYDSKAFIKGCRKLK VTPHVAAKDKHSAVDARVTRHEGYKTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQAKL TGQALLCFATYNLVRMGSIGGWWDAHHA" misc_feature 1494694..1494921 /locus_tag="Alide_1418" /note="Transposase domain (DUF772); Region: DUF772; cl12084" /db_xref="CDD:196330" misc_feature 1495177..1495578 /locus_tag="Alide_1418" /note="Transposase DDE domain; Region: DDE_Tnp_1; pfam01609" /db_xref="CDD:144990" gene complement(1495938..1496906) /locus_tag="Alide_1419" /db_xref="GeneID:10103456" CDS complement(1495938..1496906) /locus_tag="Alide_1419" /inference="similar to AA sequence:KEGG:Ajs_2981" /note="KEGG: ajs:Ajs_2981 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126068.1" /db_xref="GI:319762131" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103456" /translation="MIRRTALTLGMLALLGTTAHAQSSYPTKPIRLLVPFAAGGTTDL IARVVADPLGRELGQPVVVENKGGGGGAIGAAETARSAPDGYNLGVATVSTTATNPAI NPKIPYNVFTDFTPVVNIAATPNVIAANPQFAGKDYKSFLAEVKKNPGKYSFGSPGTG SIGHLMMEMFMLETGAQMIHVPYRGSGPALNDAVAGQIPLIFDNLPSALPFIKEKRLT ALVVAAPQRLAVLPDVPTLAEVGAPNVNRMAYYGIVGPKGLPKDIVDKVNAAVRKVLK DPAIRKRIEDTGSLIVADTPEKFAQEIKAEYTAYKNVVDKQKLTMD" sig_peptide complement(1496841..1496906) /locus_tag="Alide_1419" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 22" misc_feature complement(1495959..1496774) /locus_tag="Alide_1419" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1496975..1498216) /locus_tag="Alide_1420" /db_xref="GeneID:10103457" CDS complement(1496975..1498216) /locus_tag="Alide_1420" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dia:Dtpsy_2408 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004126069.1" /db_xref="GI:319762132" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10103457" /translation="MSIPTPGALAGIKVLDLSRVLAGPWCTQMLADLGADVVKVERPA AGDDTRHWGPPFLQDGAGRDTREASYFTACNRNKRSITVDMAHPEGQALLRRMAQQAD VVVENFKVGGLTRYGLDYDSLRALNPRLVYCSITGFGQTGPYAGRAGYDLMVQAACGL MSITGHADGEPGGGPLKVGVAVIDVFTGLYASNAILAALNARNASGEGQHIDMALLDV GMAVLANQAAGFLATGQAPGRAGNIHPSLAPYQDFQTRDGNVLLAIGNDGQFARFCAA VGHDAWAQDECFATNTARVRHRAALLERLAPLMRQRSTAEWIALLEDKAVPCGPINTI AQAFDDPQVRARGTRVDLPRDAGDGIATVATVASPMRLSATPVAYRSAPPALGQHTDE ILRELGLDAPAIAALRESRAV" misc_feature complement(1496978..1498207) /locus_tag="Alide_1420" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1498276..1499472) /locus_tag="Alide_1421" /db_xref="GeneID:10103458" CDS complement(1498276..1499472) /locus_tag="Alide_1421" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2407 acyl-CoA dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004126070.1" /db_xref="GI:319762133" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10103458" /translation="MTRAAFQWDDPFQLDQQLTEDERAIRDAARAYCQDKLAPRVLDM FRHEKTDVGIFREMGELGLLGPTIPTEYGGAGLNYVSYGLVAREIERVDSGYRSMASV QSSLVMVPINEFGSEAQKQKYLPKLASGEFIGCFGLTEPDHGSDPGSMATRAYKVDGG YRLKGNKMWITNSPVADVFVVWAKEVEPSGAVGQIRGFILDKGMKGLSAPAIHGKVGL RASITGEIVMDDVFVPEENAFPEIRGLKGPFTCLNSARFGIAWGAMGAAEFCWHTARQ YTLDRKQFGRPLAANQLIQKKLADMQTEIALGLQAALRVGRMKDEHQNVVEITSLIKR NNCGKALDIARLARDMMGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAQTG IAAFAN" misc_feature complement(1498285..1499457) /locus_tag="Alide_1421" /note="Glutaryl-CoA dehydrogenase; Region: GCD; cd01151" /db_xref="CDD:173840" misc_feature complement(1498285..1499361) /locus_tag="Alide_1421" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(order(1498333..1498335,1498339..1498341, 1498360..1498362,1498960..1498962,1498966..1498968, 1499038..1499043,1499056..1499061,1499065..1499067)) /locus_tag="Alide_1421" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:173840" misc_feature complement(order(1498345..1498350,1498705..1498707, 1498714..1498719,1498738..1498740,1499038..1499040)) /locus_tag="Alide_1421" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173840" misc_feature complement(1498345..1498347) /locus_tag="Alide_1421" /note="catalytic base [active]" /db_xref="CDD:173840" gene 1499644..1500594 /locus_tag="Alide_1422" /db_xref="GeneID:10103459" CDS 1499644..1500594 /locus_tag="Alide_1422" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_2978 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126071.1" /db_xref="GI:319762134" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103459" /translation="MRRHLPSTQALACFEAAARHESYTRAAQELALTQSAVSRQILAL EDQLGVQLFRRTRHGVVLTPAGRHYGRQVARWLQGLEQDTLDVMAHQGHGGALSLAAV ATFATRWLIPRLPQLAERHPEIVIHIETQTRPFLFTDTGFDAALYAGTPEQVANWPGV QAQLLMQEDVVPVCSPRLLEVAAQQSGMPRGTGRAHQGVPPQVLARLPLIQQSTRPHG WRQWFDAMGVQDAPRALDGPRYELFSMTAVAAAHGLGVALMPPMLIEAEMARGELVVA CPQPLRGERGYYLVSPAQHQPPVLAAFAQWLGEMAAAGAS" misc_feature 1499644..1500588 /locus_tag="Alide_1422" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature 1499668..1499844 /locus_tag="Alide_1422" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1499932..1500564 /locus_tag="Alide_1422" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(1499974..1499979,1499983..1499988,1499995..1499997, 1500007..1500009,1500013..1500033,1500352..1500369, 1500385..1500390,1500394..1500399) /locus_tag="Alide_1422" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(1500589..1500981) /locus_tag="Alide_1423" /db_xref="GeneID:10103460" CDS complement(1500589..1500981) /locus_tag="Alide_1423" /inference="protein motif:PFAM:PF04172" /note="PFAM: LrgB family protein; KEGG: dia:Dtpsy_2405 LrgB family protein" /codon_start=1 /transl_table=11 /product="lrgb family protein" /protein_id="YP_004126072.1" /db_xref="GI:319762135" /db_xref="InterPro:IPR007300" /db_xref="GeneID:10103460" /translation="MMDALRTLAPWLAASPLPWLVLTLVAYALALALYRRSGAHPLLI PVLTAVAVAIMGIAEAVMAGPLLRLLRVRDPAVRGFAIGLTAHAIGTARELQVHPTAG AFTALAMGLDGVATAVLAPVCVALLGWL" misc_feature complement(1500601..>1500852) /locus_tag="Alide_1423" /note="LrgB-like family; Region: LrgB; cl00596" /db_xref="CDD:186096" gene complement(1500981..1501256) /locus_tag="Alide_1424" /db_xref="GeneID:10103461" CDS complement(1500981..1501256) /locus_tag="Alide_1424" /inference="protein motif:PFAM:PF03788" /note="PFAM: LrgA family protein; KEGG: dia:Dtpsy_2404 LrgA family protein" /codon_start=1 /transl_table=11 /product="lrga family protein" /protein_id="YP_004126073.1" /db_xref="GI:319762136" /db_xref="InterPro:IPR005538" /db_xref="GeneID:10103461" /translation="MLLLLAGLLALGRVPQALERAAGGLLQHTMLLFIPAITGVMLHF DRIAQEWRPFLVAGVAGAAVTLAATAGTLHWLLRDSQSERPDEQERP" misc_feature complement(<1501104..>1501214) /locus_tag="Alide_1424" /note="LrgA family; Region: LrgA; cl00608" /db_xref="CDD:186103" gene 1501561..1501788 /locus_tag="Alide_1425" /db_xref="GeneID:10103462" CDS 1501561..1501788 /locus_tag="Alide_1425" /inference="similar to AA sequence:KEGG:Dtpsy_2403" /note="KEGG: dia:Dtpsy_2403 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126074.1" /db_xref="GI:319762137" /db_xref="GeneID:10103462" /translation="MATAQPLYHAPTFEPTVDEIATLKQLEMGQAIAVPDALKHHLSG RLLEWGYIGKSPAGIFHITDTGRKLIKRQDN" gene 1501821..1501934 /locus_tag="Alide_1426" /db_xref="GeneID:10103463" CDS 1501821..1501934 /locus_tag="Alide_1426" /inference="similar to AA sequence:KEGG:Dgri_GH23134" /note="KEGG: dgr:Dgri_GH23134 GH23134 gene product from transcript GH23134-RA" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126075.1" /db_xref="GI:319762138" /db_xref="GeneID:10103463" /translation="MIPRIAHAHREPADQPVEPDIPAPPPEPADTPPHAAC" gene complement(1501952..1502248) /locus_tag="Alide_1427" /db_xref="GeneID:10103464" CDS complement(1501952..1502248) /locus_tag="Alide_1427" /inference="similar to AA sequence:KEGG:Ajs_2619" /note="KEGG: ajs:Ajs_2619 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126076.1" /db_xref="GI:319762139" /db_xref="GeneID:10103464" /translation="MLKRFFDPATIYARRVQSCLDEARMAALEHENAAEHHMALAKMY RHRVARLEAELAPEDRQASLVAQPAAPMPHIAALKKHKETGQRQPAYLTQSAAG" gene complement(1502404..1503006) /locus_tag="Alide_1428" /db_xref="GeneID:10103465" CDS complement(1502404..1503006) /locus_tag="Alide_1428" /inference="protein motif:PFAM:PF07589" /note="PFAM: protein of unknown function DUF1555; KEGG: tbd:Tbd_0194 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126077.1" /db_xref="GI:319762140" /db_xref="InterPro:IPR011449" /db_xref="InterPro:IPR013424" /db_xref="GeneID:10103465" /translation="MRKILGAIAMAGCMMTGANATIVYQFQVTSMECSGSHCEDWSSE LNSLTISMSAPIGELNVRTVDWGTPIESTQYYNSNIVAVDFAALDIFVNMQEGRCESP VLCEMVATLQANDGYLQGIIRTLSTMYADTFMSTNGSDLWSGYLNSDRGPTTPDNRPI YSGVWYAVPEPGALALLGVGLVGMVGVRQRRRTAAVAAST" sig_peptide complement(1502944..1503006) /locus_tag="Alide_1428" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 21" gene complement(1503230..1503547) /locus_tag="Alide_1429" /db_xref="GeneID:10103466" CDS complement(1503230..1503547) /locus_tag="Alide_1429" /inference="protein motif:TFAM:TIGR01563" /note="TIGRFAM: phage head-tail adaptor; KEGG: bcm:Bcenmc03_1291 phage head-tail adaptor" /codon_start=1 /transl_table=11 /product="phage head-tail adaptor" /protein_id="YP_004126078.1" /db_xref="GI:319762141" /db_xref="InterPro:IPR008767" /db_xref="GeneID:10103466" /translation="MNAGKLDQRVTVERFTSTVDDWGTPIESWAPLFTCWAAVEPLVG REYIAAQALQSEVTTRIRMRFRPWMTAQDRVIHNGTTYNIVSLIDVRSDHRELVLMCK AVG" misc_feature complement(1503245..1503529) /locus_tag="Alide_1429" /note="Phage head-tail joining protein; Region: Phage_H_T_join; cl11461" /db_xref="CDD:196243" gene complement(1503544..1503822) /locus_tag="Alide_1430" /db_xref="GeneID:10103467" CDS complement(1503544..1503822) /locus_tag="Alide_1430" /inference="protein motif:TFAM:TIGR01560" /note="TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bcm:Bcenmc03_1290 phage protein DNA packaging protein" /codon_start=1 /transl_table=11 /product="uncharacterized phage protein" /protein_id="YP_004126079.1" /db_xref="GI:319762142" /db_xref="InterPro:IPR006450" /db_xref="GeneID:10103467" /translation="MLTLAETKLHLRVDHDDEDALILAMIDTAASAVANDLNMEVIDL DTDAPAPVKSAALLLVGDLYANREAQTERPLTSNQTYARLLAPYRVYA" misc_feature complement(1503556..1503816) /locus_tag="Alide_1430" /note="Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; Region: gp6; cd08054" /db_xref="CDD:153446" misc_feature complement(order(1503559..1503564,1503571..1503576, 1503580..1503591,1503592..1503594,1503622..1503630, 1503634..1503642,1503646..1503654,1503661..1503663, 1503670..1503678,1503718..1503720,1503727..1503732, 1503739..1503744,1503748..1503753,1503760..1503765, 1503787..1503789,1503793..1503798,1503805..1503807)) /locus_tag="Alide_1430" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153446" gene complement(1504003..1505508) /locus_tag="Alide_1431" /db_xref="GeneID:10103468" CDS complement(1504003..1505508) /locus_tag="Alide_1431" /inference="protein motif:PFAM:PF03354" /note="PFAM: Terminase; KEGG: pap:PSPA7_5155 phage terminase, large subunit" /codon_start=1 /transl_table=11 /product="terminase" /protein_id="YP_004126080.1" /db_xref="GI:319762143" /db_xref="InterPro:IPR005021" /db_xref="GeneID:10103468" /translation="MTMTRAARIIEFIERYCVTPEGAHVGQPLVLAEFQKQFLRDVYD NPAGTRRAILSIARKNGKSGLIAGLLLAHLVGPEAKQNAQIVSGAMSRDQAALVFNLA CKMVQQSPKLAPLVRIIPSGKRLIGLPMNVEFRALAADGKTAHGLSPSLAILDETGQV RGPQSDFVDAITTSQGAHEAPLLIAISTQAASDQDLFSQWLDDAQRSADPRIVCHLYA APEGCDLMDESAWRAANPALGLFRSEDDLREQMTQAQRMPSMENSARNLLLNQRVSTE SPFVSPDVWKANCANLRSFDGPVFAGLDLSARTDLTALVIVGQVDDVWHVQAHFWTPE QGLADRARRDRAPYDVWHRQGFLRTTPGATVDYEHVAADMLEILADMDVQAIAYDRWR IDLMRKELDKLGADLPLIEWGQGYKDMAPALDALEAELLNGRIAHGMHPVLTMCAANA VVTKDPTGARKLDKAKATGRIDGLQALAMAMGVASRAEQAQFVGFDAFTFV" misc_feature complement(1504045..1505361) /locus_tag="Alide_1431" /note="Phage Terminase; Region: Terminase_1; pfam03354" /db_xref="CDD:112181" gene complement(1505531..1505941) /locus_tag="Alide_1432" /db_xref="GeneID:10103469" CDS complement(1505531..1505941) /locus_tag="Alide_1432" /inference="similar to AA sequence:KEGG:XBJ1_2042" /note="KEGG: xbo:XBJ1_2042 terminase small subunit" /codon_start=1 /transl_table=11 /product="terminase small subunit" /protein_id="YP_004126081.1" /db_xref="GI:319762144" /db_xref="GeneID:10103469" /translation="MTKPRRTRSDSAKAAVQAHQNAAQAPIEPPVYVTLPDECRPFWQ AIVTSRARDTWTESDLVTAANMARVQQALQEVAIGGDEHVKLTRLALALARSLSVHVT ATAGRAADMVNASTAERSARQDDGDELIPRLRAV" gene complement(1506007..1506360) /locus_tag="Alide_1433" /db_xref="GeneID:10103470" CDS complement(1506007..1506360) /locus_tag="Alide_1433" /inference="protein motif:PFAM:PF01844" /note="KEGG: pap:PSPA7_5153 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease" /codon_start=1 /transl_table=11 /product="hnh endonuclease" /protein_id="YP_004126082.1" /db_xref="GI:319762145" /db_xref="GO:0003676" /db_xref="GO:0004519" /db_xref="InterPro:IPR002711" /db_xref="InterPro:IPR003615" /db_xref="GeneID:10103470" /translation="MSTERTWPYQPTKRWTKANNGRLLPLNSDAWRKLRRQVLAEQPL CQYCPPGTITPATEVDHKNNDPADNSRENLVSTCKPCHSIKTMADLYGRPARMGCDAE GNPINPAHPWNEKSR" misc_feature complement(1506103..1506267) /locus_tag="Alide_1433" /note="HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins...; Region: HNHc; cd00085" /db_xref="CDD:28969" misc_feature complement(order(1506103..1506105,1506115..1506117, 1506124..1506129,1506139..1506144,1506175..1506183, 1506187..1506189)) /locus_tag="Alide_1433" /note="active site" /db_xref="CDD:28969" gene complement(1506357..1507550) /locus_tag="Alide_1434" /db_xref="GeneID:10103471" CDS complement(1506357..1507550) /locus_tag="Alide_1434" /inference="protein motif:TFAM:TIGR01537" /note="KEGG: bcm:Bcenmc03_1286 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein" /codon_start=1 /transl_table=11 /product="phage portal protein, hk97 family" /protein_id="YP_004126083.1" /db_xref="GI:319762146" /db_xref="InterPro:IPR006427" /db_xref="InterPro:IPR006944" /db_xref="GeneID:10103471" /translation="MSIITRIKSAMGLESRSVLGVNGWPIPLSATSVTPESAQGVGAC YAAVALIAEAIGSLPLRLYRRDGEDRTTATDHPLHTVLHRAPNDQQSATEFWEWMVSS MLLTGNAYAKVSRGWDGQVRSLDPMVTSNVTIMRKGETIAGYEYTNRDGVRERLLPAE VFHLRHRAGNDPLVGVSPITAARAVIQLAQAEAQHGQSTFDNGTRASGIISMPGRLKP EQRQAIAASWASQYAGGANAGKVPVMEEGSTFTPISLSLADSEWVAARRFSVEEICRI FKVPPVLIGDLSHSTYSNSVAMDMFFAKHTLGRHLSAIEGAINRQLLTPQAARSLYAE FSLEGLLRGSSQERAAFYSSGVSDGWLKRSEVRKLENLPALPGVDDAPTGTATPAAKP YPSKQ" misc_feature complement(1506432..1507466) /locus_tag="Alide_1434" /note="Phage-related protein [Function unknown]; Region: COG4695; cl01923" /db_xref="CDD:194210" misc_feature complement(1506438..1507457) /locus_tag="Alide_1434" /note="Phage portal protein; Region: Phage_portal; pfam04860" /db_xref="CDD:147162" gene complement(1507547..1508095) /locus_tag="Alide_1435" /db_xref="GeneID:10103472" CDS complement(1507547..1508095) /locus_tag="Alide_1435" /inference="protein motif:TFAM:TIGR01543" /note="KEGG: bcm:Bcenmc03_1285 HK97 family phage prohead protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97" /codon_start=1 /transl_table=11 /product="phage prohead protease, hk97 family" /protein_id="YP_004126084.1" /db_xref="GI:319762147" /db_xref="InterPro:IPR006433" /db_xref="GeneID:10103472" /translation="MKLEIRNGELRASSPGRLTGYVARFNSETRIGDFAEVIRAGAFT TSLSDGRNIVALADHDRRALLGSTASGTLQLREDAHGLAFDLRLPDTSVGRDVAVLVE SGLIRGASFGFMVPSGGDTWTDRGDGSMLRELRRVELHEVTVTAQPAYPDTEVAKRSM PSVYELHRPGIGGNALWLETCR" misc_feature complement(1507607..1508071) /locus_tag="Alide_1435" /note="Caudovirus prohead protease; Region: Peptidase_U35; cl01521" /db_xref="CDD:163987" gene complement(1508106..1509332) /locus_tag="Alide_1436" /db_xref="GeneID:10103473" CDS complement(1508106..1509332) /locus_tag="Alide_1436" /inference="similar to AA sequence:KEGG:Bcenmc03_1284" /note="KEGG: bcm:Bcenmc03_1284 major capsid protein HK97" /codon_start=1 /transl_table=11 /product="major capsid protein hk97" /protein_id="YP_004126085.1" /db_xref="GI:319762148" /db_xref="GeneID:10103473" /translation="MQLHQIREARAAKVSEARSLLASTPQLNAEGQAKFDKLKIEIQN LEADEQRAQFIEDAERRSLGAPVDKARNELEGQVNVLDAIAAQIENRSVTGALAEFQS EAKRQGLTARNGGVLVPTSIFEKRATMTTTGAAAVVPDDYRADQFIGLLRNSLIVRSL GARVLTGLRGDTVLPKATGAATAYWLSEGDSLTESNTTYSSIKLEPKTVGALTAFSRQ LALQSNPSIEALLRDDISAVVGLAVDKALLHGTAAAKQPVGILNVSGIQTASLATLSW AAIVAMLEKLGLENITANAIVTHAKAATKLQTTLKDATAGSEYLMQAGRVAGLPAYVT NQLDAKTGTPNTGRVIAGDFSQLVIGEWGATEVLANPYAAGYYEKGDVQLRIMHSMDA VVRHPKAFVVADDLGL" misc_feature complement(1508124..1509326) /locus_tag="Alide_1436" /note="phage major capsid protein, HK97 family; Region: major_cap_HK97; TIGR01554" /db_xref="CDD:162419" misc_feature complement(1508118..1508924) /locus_tag="Alide_1436" /note="Phage capsid family; Region: Phage_capsid; pfam05065" /db_xref="CDD:147312" gene complement(1509771..1510352) /locus_tag="Alide_1437" /db_xref="GeneID:10103474" CDS complement(1509771..1510352) /locus_tag="Alide_1437" /inference="similar to AA sequence:KEGG:Ajs_1730" /note="manually curated; KEGG: ajs:Ajs_1730 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126086.1" /db_xref="GI:319762149" /db_xref="GeneID:10103474" /translation="MANGRNRGHKGDSGRDAGGFIALPWSVLDCPAYAALSHPARALL FELARQFVRDNNGRLLASAAYLAKRGWKSADVITRAKRDLIEAGFIHETVKGHRPNKA SWYAVTWRALDKIPGYDPGAAATFVRGAYQKNAPLRPSPGVERAPIAPSPGVESAPPR PSPGAIRGVFSTPPTPSHGNHLEMPSIGSRMQH" gene complement(1510352..1511218) /locus_tag="Alide_1438" /pseudo /db_xref="GeneID:10103475" gene 1511343..1511666 /locus_tag="Alide_1439" /db_xref="GeneID:10103476" CDS 1511343..1511666 /locus_tag="Alide_1439" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126087.1" /db_xref="GI:319762150" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103476" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature 1511343..1511600 /locus_tag="Alide_1439" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1511663..1512577 /locus_tag="Alide_1440" /db_xref="GeneID:10103477" CDS 1511663..1512577 /locus_tag="Alide_1440" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126088.1" /db_xref="GI:319762151" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10103477" /translation="MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSAR AQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIVVARCTVERLMRAMGLQGARRG RAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAASDTSTKVST" misc_feature 1511723..1512559 /locus_tag="Alide_1440" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature 1512038..1512394 /locus_tag="Alide_1440" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1512609..1512824) /locus_tag="Alide_1441" /db_xref="GeneID:10103478" CDS complement(1512609..1512824) /locus_tag="Alide_1441" /inference="similar to AA sequence:KEGG:Rpic_2748" /note="KEGG: rpi:Rpic_2748 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126089.1" /db_xref="GI:319762152" /db_xref="GeneID:10103478" /translation="MSKSTATRDQYKRIVEALRMRPQTSYDLRRLGIYQAPARIKELR DRHGYSITTDPVVIVDRDGYHHARVAL" gene complement(1512821..1513069) /locus_tag="Alide_1442" /db_xref="GeneID:10103479" CDS complement(1512821..1513069) /locus_tag="Alide_1442" /inference="protein motif:PFAM:PF05930" /note="PFAM: Prophage CP4-57 regulatory; KEGG: bra:BRADO6209 prophage CP4-57 regulatory protein" /codon_start=1 /transl_table=11 /product="prophage cp4-57 regulatory" /protein_id="YP_004126090.1" /db_xref="GI:319762153" /db_xref="InterPro:IPR010260" /db_xref="GeneID:10103479" /translation="MQPASVSRRHNRASSQTIQALHIPEALLKIQTVTAVTGMSESTI RRRVAEGKFPSPVKDGTRCTRWVAGQVSNWLRAKGAVQ" misc_feature complement(1512845..1512991) /locus_tag="Alide_1442" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene complement(1513127..1513936) /locus_tag="Alide_1443" /db_xref="GeneID:10103480" CDS complement(1513127..1513936) /locus_tag="Alide_1443" /inference="similar to AA sequence:KEGG:Tbd_2676" /note="KEGG: tbd:Tbd_2676 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126091.1" /db_xref="GI:319762154" /db_xref="GeneID:10103480" /translation="MDCFDNFDPIEGNVPLYPFYGLFDVAWKARELLAGLSKQDILWI EHEVDWQIEKARDLFAQAAERNQNRLDDDSDDFDEEISEIEAMSFAVDAGLGTTNSDE PGHCPIRCAAVLALMFVANCINTLNCPEEDLGTADDGPIGARLIPAANDAFNAALALG LALKYERHIEITNDLEIEMDERLADFNKDRARRAAMRKHGPTNQAKAFVTAEWARHRS AYNGNKSAFARDYVRRIHNEYHVSITEKQMREVWLKDTPPASKPDGLPANG" gene complement(1514026..1514514) /locus_tag="Alide_1444" /db_xref="GeneID:10103481" CDS complement(1514026..1514514) /locus_tag="Alide_1444" /inference="similar to AA sequence:KEGG:RPC_3988" /note="KEGG: rpc:RPC_3988 tetratricopeptide TPR_2" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126092.1" /db_xref="GI:319762155" /db_xref="GeneID:10103481" /translation="MAETKSTENAMAADEWVSVPVITSAHAKAPKVDPYLKPGTVTTK AVSYGGVSLPPLMQGVEGGSALNGEPKDYSVKVMWVNRRQIDAVLCAIESEQPELQAV LSAVRAFMCHLDSVRDEAKLGASLAKGALEAGNSEVAISNLNTVVKMLGRWNDEHRLY LH" gene complement(1514616..1515851) /locus_tag="Alide_1445" /db_xref="GeneID:10103482" CDS complement(1514616..1515851) /locus_tag="Alide_1445" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: lch:Lcho_2200 integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004126093.1" /db_xref="GI:319762156" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10103482" /translation="MLTEIACKSTTCPADKPRVRFADSGGLYLEVTPNGSKRWFWKYR FDGKEKRIAFGSYPDVKLKEARTARDDARKLHQQGIDPAQKRQLDRLENKRQADVTFE AVAREFHATKASGWSKQYGERWIERMEKDLFPWIGALPLATITAPMLLHALRRTEARG AKETAHTLRQTAGQVFRYGIATGRCERNPAPDLHGALAPLNVKHMAAVLDADSAGKLM RAIFDYEGQPSTRAALELSALLFQRPGNIRHMEWVEIDLDAALWTIPADKMKRTIYGK TNGRPHFVPLAPRAIQILKDLKPLTGHGKYVFPSLLTGERAMSENTIRTALRRMGYTN DEMTPHGFRAMARTIMVERLNMHPDVIEAQLAHGKSGPLGAAYDRAQFMEQRRQMMNE WADYLDKLRTGADVIPLRA" misc_feature complement(1514640..1515785) /locus_tag="Alide_1445" /note="integrase; Provisional; Region: PRK09692" /db_xref="CDD:170049" misc_feature complement(1514667..1515770) /locus_tag="Alide_1445" /note="Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801" /db_xref="CDD:29502" misc_feature complement(order(1514721..1514723,1514751..1514753, 1514823..1514825,1514832..1514834,1515042..1515044, 1515123..1515125)) /locus_tag="Alide_1445" /note="active site" /db_xref="CDD:29502" misc_feature complement(order(1514721..1514723,1514751..1514753, 1514823..1514825,1514832..1514834,1515042..1515044, 1515123..1515125)) /locus_tag="Alide_1445" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29502" gene complement(1516026..1516102) /locus_tag="Alide_R0015" /note="tRNA-Arg3" /db_xref="GeneID:10103483" tRNA complement(1516026..1516102) /locus_tag="Alide_R0015" /product="tRNA-Arg" /db_xref="GeneID:10103483" gene complement(1516206..1518056) /locus_tag="Alide_1446" /db_xref="GeneID:10103484" CDS complement(1516206..1518056) /locus_tag="Alide_1446" /inference="protein motif:PFAM:PF00246" /note="KEGG: ajs:Ajs_2610 peptidase M14, carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A" /codon_start=1 /transl_table=11 /product="peptidase m14 carboxypeptidase a" /protein_id="YP_004126094.1" /db_xref="GI:319762157" /db_xref="GO:0004181" /db_xref="GO:0008270" /db_xref="InterPro:IPR000834" /db_xref="GeneID:10103484" /translation="MMTPKAPHHSTAWQPATALQSTSARALRQGWALVVAAVLSACSS TPLPPWTTQPPSAAQPPAAAQARRPVPPPLGTAPRGEVPAAPVTITPIGPNASEPSAA AQLPYGEAVAARFPDPSVRYETPGLAEGRRAFTTNAELTQWLRDLAAAQHGATRMQML DLGLSQRGTPIHALVLTRAAGTDAMALEAGRRPTVLLIGQQHGDEPAGSEALLVVARE LAQGLLEPMLDRINVIVVPRANPDGADAGTRVTASGADMNRDHLLLQTPEAQALARLV RNYRPMAIIDAHEYTVAGRFLEKFHAIQRYDVLLQHATTANLPEFMTKAALEWYRTPM VKALGAENLTQEWYYTTSTRPDDLRISMGGTQPDTGRNVNGLKNAVSMLLETRGVGIG RTHIQRRVHSHVTAITSALRSTVERANDLEQVRSYEARDISAQACRGDIVVEAGPTPT QRELVMLDPDTGADRTLRVDWNSSLELVTLKKRPRPCGYWLAGGASEAVERLKLLGLQ VMRVAEPGSILADTYQETGRTTAQRQDVRGTVAGGQGIIRVQVTPTRSAIDVPAESYY VPLNQPLANLAVAALEPDTQNSYFANRLIPNLGDTARVMAPPSLVFEDTD" misc_feature complement(1516839..1517573) /locus_tag="Alide_1446" /note="The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key...; Region: Peptidase_M14_like; cl11393" /db_xref="CDD:196209" misc_feature complement(order(1516902..1516904,1517148..1517150, 1517190..1517195,1517280..1517285,1517310..1517312, 1517442..1517444,1517451..1517453)) /locus_tag="Alide_1446" /note="active site" /db_xref="CDD:133066" misc_feature complement(order(1517193..1517195,1517442..1517444, 1517451..1517453)) /locus_tag="Alide_1446" /note="Zn-binding site [ion binding]; other site" /db_xref="CDD:133066" gene complement(1518157..1519851) /locus_tag="Alide_1447" /db_xref="GeneID:10103485" CDS complement(1518157..1519851) /locus_tag="Alide_1447" /inference="protein motif:PFAM:PF00270" /note="KEGG: ajs:Ajs_2609 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein" /codon_start=1 /transl_table=11 /product="dead/deah box helicase domain protein" /protein_id="YP_004126095.1" /db_xref="GI:319762158" /db_xref="GO:0003676" /db_xref="GO:0004386" /db_xref="GO:0005524" /db_xref="GO:0008026" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR014021" /db_xref="GeneID:10103485" /translation="MTFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAG AQTGTGKTAAFTLPMLHRLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRTYGK HLDIKSTVIFGGVGMNPQIERIKRGVDVLVATPGRLLDLQQQGFIDLSQVEILVLDEA DRMLDMGFIHDVKKVLALLPKAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTT VQRISQVIHPVGRGKKKQVLLHIIQEHDWSQVLVFTRTKFGANNVAEYLTKHGVQAMA LHGNKSQSARTQALEGFKSGQIRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHR IGRTGRAGKEGQAVSLVCMDEEGFMMEIERFTKQEIPVQVIEGFGPDEGEKAEPIAMG RQTIWGGAGKPPSREVMQAAAKAARQEMMERIRTNKATQGAPRGGRQGGQGEGQRATQ GQGGGAGRGGNGGRPAGRGQQQPRNAGEGRRGGGNGGGGGNRRFDDSQPRSENAHLGT QLAHVNLGPRHGGNRTSQPDPMRTSVDSMADRGRRGGFRSGGGGGGRGSRGGGFGR" misc_feature complement(1518724..1519848) /locus_tag="Alide_1447" /note="helicase 45; Provisional; Region: PTZ00424" /db_xref="CDD:185609" misc_feature complement(1519222..1519845) /locus_tag="Alide_1447" /note="DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (...; Region: DEADc; cd00268" /db_xref="CDD:28928" misc_feature complement(1519696..1519710) /locus_tag="Alide_1447" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28928" misc_feature complement(1519369..1519380) /locus_tag="Alide_1447" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:28928" misc_feature complement(1519279..1519287) /locus_tag="Alide_1447" /note="motif III; other site" /db_xref="CDD:28928" misc_feature complement(1518802..1519188) /locus_tag="Alide_1447" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature complement(order(1518934..1518942,1519015..1519020, 1519078..1519089)) /locus_tag="Alide_1447" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(order(1518832..1518834,1518841..1518843, 1518853..1518855,1518916..1518918)) /locus_tag="Alide_1447" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene 1520109..1521770 /locus_tag="Alide_1448" /db_xref="GeneID:10103486" CDS 1520109..1521770 /locus_tag="Alide_1448" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_1200 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126096.1" /db_xref="GI:319762159" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103486" /translation="MAQYVFSMNRVTKTVPPKRQILKDISLSFFPGAKIGVLGLNGSG KSSLLKIMAGVDKEFEGEAIPMPGLSIGYLPQEPQLNPEHTVRQAVEEAMAEVNNARA RLEEVYAAYAEEDADFDALAKEQGELEAIIAAAGTDSEHQLEIAADALRLPPWDAVIG KLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVEWLEQFLHRFPGTVVAITHDR YFLDNAAEWILELDRGHGIPYKGNYSEWLLQKQNRLEAEQKGEEARAKALKKELEWVR QNAKGRQAKSKARIARFEELSDYEYQRRNETQEIFIPVADRLGTQVIEFHGVTKSFGD RVLIDNLSMNVPAGAIVGIIGPNGAGKSTLFKLIAGKEQPDSGQVIVGQTVKMAFVDQ SRDALANDKTVWEDVSGGLDIINVGKFQMASRAYCGRFNFNGQDQQKKVGNLSGGERG RLHLAKTLIQGGNVLLLDEPSNDLDVETLRALEDALLEYAGTVLVISHDRWFLDRIAT HILAAEGDSQWVFFDGNYQEYEADKKKRLGEEGAAPKRMRYKALK" misc_feature 1520109..1521764 /locus_tag="Alide_1448" /note="putative ABC transporter ATP-binding protein; Reviewed; Region: PRK11819" /db_xref="CDD:183324" misc_feature 1520127..>1520336 /locus_tag="Alide_1448" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1520223..1520246 /locus_tag="Alide_1448" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(1520232..1520237,1520241..1520249,1520334..1520336) /locus_tag="Alide_1448" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature <1520310..1520678 /locus_tag="Alide_1448" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1520325..1520336 /locus_tag="Alide_1448" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature <1520589..1520813 /locus_tag="Alide_1448" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" misc_feature 1520793..1520996 /locus_tag="Alide_1448" /note="ABC transporter; Region: ABC_tran_2; pfam12848" /db_xref="CDD:193322" misc_feature 1521075..1521656 /locus_tag="Alide_1448" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" gene complement(1521777..1523108) /locus_tag="Alide_1449" /db_xref="GeneID:10103487" CDS complement(1521777..1523108) /locus_tag="Alide_1449" /inference="similar to AA sequence:KEGG:Ajs_2606" /note="KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein" /codon_start=1 /transl_table=11 /product="trap transporter solute receptor taxi family protein" /protein_id="YP_004126097.1" /db_xref="GI:319762160" /db_xref="GeneID:10103487" /translation="MERLPRRLRTLLLSLRDLLLSAGPLAVLGVGLVVLAFQWLKPTP PHQVTLATGPAQSAYEAFGKRYQEALAANGIEVRLLPSDGSSANLQLLRSGQADLAFV QGGTGELRPGDGDELVSLGSLFVEPVWLFYRGDAARRAHGTARLDGLHQLRGMRVNVG SPGSGVPTLMERLLAANHVPPADLALTQLEQTPATVELLAGRLDALVFASAPESLMVQ MLLQTPGVQLMGFAQNEAYGRRFPFLTPVTLPRGVVDLAANVPPRDVRLVASTTSLLA REGTHPALLQLFAQAAQTIHGGAGWFNRAREFPSTRHAELPIAKEGERAINEPTPLLQ RYLPFWIANLVERMWLVLGILIAVMLPLSRVVPPLYQLRVRSRVFRWYGHLREIEDDM EAGRATPEELRERLTRLEHRVEKVSVPLSYADELYALRNHIQLVRRRVPGA" misc_feature complement(1522275..1522994) /locus_tag="Alide_1449" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1523115..1524128) /locus_tag="Alide_1450" /db_xref="GeneID:10103488" CDS complement(1523115..1524128) /locus_tag="Alide_1450" /inference="protein motif:PFAM:PF03576" /note="PFAM: peptidase S58 DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA" /codon_start=1 /transl_table=11 /product="peptidase s58 dmpa" /protein_id="YP_004126098.1" /db_xref="GI:319762161" /db_xref="InterPro:IPR005321" /db_xref="GeneID:10103488" /translation="MQALSPHGASGAITDVAGIMVGHHSDTRRPTGCSVVIAPGGAVA GVDVRGAAPGTRETDLLAPGNLVQQVHAVMLAGGSAWGLDAASGAVRWLEEQGIGLDV GVGRLPLVPAAVLFDLHVGDMRIRPDAAAGYAACAAASGRPPAEGNVGAGSGAVVGKT FGMQHAMKGGVGTASVTVDGVTVGALIACNAVGDVVDPDTGLPLAGARTADGSALRDA RRALLRGEPPHQLLAGSNTTIGVIATDAQLTKVQAQRLAVAGHDGLARAINPVHTMSD GDTLFALATGHAPRHPGMLVLATMAAEAVARATVRAVLAARTLATPEGLVLPSHAELA ARG" misc_feature complement(1523262..1524092) /locus_tag="Alide_1450" /note="nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-; Region: nylC_like; cd02252" /db_xref="CDD:73148" misc_feature complement(order(1523298..1523303,1523418..1523420, 1523559..1523561,1523565..1523567,1523781..1523789)) /locus_tag="Alide_1450" /note="putative active site pocket [active]" /db_xref="CDD:73148" misc_feature complement(1523418..1523423) /locus_tag="Alide_1450" /note="cleavage site" /db_xref="CDD:73148" gene complement(1524167..1524646) /locus_tag="Alide_1451" /db_xref="GeneID:10103489" CDS complement(1524167..1524646) /locus_tag="Alide_1451" /inference="protein motif:PFAM:PF04214" /note="PFAM: protein of unknown function DUF411; KEGG: dia:Dtpsy_1206 protein of unknown function DUF411" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126099.1" /db_xref="GI:319762162" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR007332" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10103489" /translation="MHDTNRRQWLTAIAAAAACTALPAIASNATAVEVWKDPSCGCCQ DWIDHMQANGFAVTTHESGNAAVRARLGLPQRLGSCHTALVGGYLLEGHVPAADVRKL LKEKPKALGLAVPGMPVGSPGMDGPAYNGRKDPYDVLLVTKNLMNSDVSTRVFTSYR" sig_peptide complement(1524551..1524646) /locus_tag="Alide_1451" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.658 at residue 32" misc_feature complement(1524170..1524562) /locus_tag="Alide_1451" /note="Protein of unknown function, DUF; Region: DUF411; cl01142" /db_xref="CDD:154225" gene complement(1524673..1525158) /locus_tag="Alide_1452" /db_xref="GeneID:10103490" CDS complement(1524673..1525158) /locus_tag="Alide_1452" /inference="protein motif:PFAM:PF00127" /note="PFAM: blue (type 1) copper domain protein; KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein" /codon_start=1 /transl_table=11 /product="blue (type 1) copper domain protein" /protein_id="YP_004126100.1" /db_xref="GI:319762163" /db_xref="GO:0005507" /db_xref="GO:0009055" /db_xref="InterPro:IPR000923" /db_xref="InterPro:IPR002355" /db_xref="GeneID:10103490" /translation="MKTIKFIAACALLVSTSHVFSHENASHGSHAAPAPQQQAWGIAG QAREATRTITLRMTDDMRFTPAQFKARVGETVRLRVENKGKVLHEVVLGTQASLAEHA AMMREHPGMAHAEAHMAHVAPGGAQDLVWRFNRAGSFDFACLVAGHYEAGMRGTFTVT P" sig_peptide complement(1525093..1525158) /locus_tag="Alide_1452" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.805 at residue 22" misc_feature complement(1524676..1525077) /locus_tag="Alide_1452" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" gene complement(1525259..1525606) /locus_tag="Alide_1453" /db_xref="GeneID:10103491" CDS complement(1525259..1525606) /locus_tag="Alide_1453" /inference="similar to AA sequence:KEGG:Dtpsy_1211" /note="KEGG: dia:Dtpsy_1211 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126101.1" /db_xref="GI:319762164" /db_xref="GeneID:10103491" /translation="MRRCTSIFLAILLVLRVLLGDAMAMGVAPQPAPHMAADMAHAAS HGAHSGQDCCSPGEHAQHQADCTACGACHSAPGILAWMPAPPAAPGGAPLPQRDARFA SAPAAQAIKPPIA" sig_peptide complement(1525532..1525606) /locus_tag="Alide_1453" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.746 at residue 25" gene complement(1525624..1526250) /locus_tag="Alide_1454" /db_xref="GeneID:10103492" CDS complement(1525624..1526250) /locus_tag="Alide_1454" /inference="protein motif:PFAM:PF02588" /note="KEGG: dia:Dtpsy_1212 protein of unknown function DUF161; manually curated; PFAM: protein of unknown function DUF161" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126102.1" /db_xref="GI:319762165" /db_xref="InterPro:IPR003740" /db_xref="GeneID:10103492" /translation="MSAPALPVPATMLAHTRTEDTVAIATGVTLVSVGVAFVASAGLL TGGITGLAFVLHYATGIGLGKLFFVLNLPFYWLALRKLGLAFTLKTFVAVLLLSALTE LQSRLLQITQPQPLYAAVTGGLIMGIGFLVLFRHRCSLGGLGILALYLQDRFGWRAGK VQMAVDCCILLAALATVEPMRVLWSVIGAVALNLVLAMNHRPGRYIGA" misc_feature complement(1525663..1525908) /locus_tag="Alide_1454" /note="Uncharacterized BCR, YitT family COG1284; Region: DUF161; pfam02588" /db_xref="CDD:190354" gene complement(1526397..1528412) /locus_tag="Alide_1455" /db_xref="GeneID:10103493" CDS complement(1526397..1528412) /locus_tag="Alide_1455" /inference="protein motif:TFAM:TIGR01525" /note="KEGG: ajs:Ajs_2594 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="heavy metal translocating p-type atpase" /protein_id="YP_004126103.1" /db_xref="GI:319762166" /db_xref="GO:0005524" /db_xref="GO:0046872" /db_xref="GO:0046873" /db_xref="InterPro:IPR001366" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006404" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="InterPro:IPR018303" /db_xref="GeneID:10103493" /translation="MSHSHTSQPHAHSPGPGVAAALPSLDAPAGCSGCACGHGAQADD GHDHGALPGWPRIAAALALAAGAEGAHWLQQDMAGMALAVAAVALAGLGVYKSGLKDL ARLRLGIHALMAVAVTGAFLIGQWPEAAMVMALYVAAERIEDGAMDRARHAIRGLLQL APPTADVVQADGSTQRLPVAQVPLGATVRIAPGAHVPLDGTVTHGSSAVNQAPITGES RLADKAAGDPLYAGSVNQHGELLMQVTAEPAGTLLARIVRAVEQAQAGKAPIQRFVDR FAAVYTPIVFALAVLLALLAPPLMGWSWTQAVYQALALLVIACPCALVISTPVTVVSA LTAAARRGILIKGGGVLESARGLRVLALDKTGTLTTGSPTLVHWQALDGADASAAASA AWQLASRSEHPVSRAIAAGLPAAGANGVQQLQALPGLGVQAEIGGRRWLLGNLRLMRE QGLVDAALEDTLAQHERQGRSVTLLADGQGVRALFAVADPLRAQARQAMEQLRALGVH PVVLSGDNPATAQAIAAEAGVEDARGGLLPQDKLDALAALQRSHGPTAMAGDGINDAP ALAQADLGFAMGGAHSTGMAMETAGIVLMNDDLRRIPDTVLLARRAHRVLWQNIALAL GIKAVFCVLALLGQASMWMAVAADMGVSLLVVANGLRLRRWRHAAEK" misc_feature complement(1526427..1528088) /locus_tag="Alide_1455" /note="heavy metal translocating P-type ATPase; Region: ATPase-IB_hvy; TIGR01525" /db_xref="CDD:188152" misc_feature complement(1527354..1528022) /locus_tag="Alide_1455" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature complement(1526625..1526957) /locus_tag="Alide_1455" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 1528453..1528911 /locus_tag="Alide_1456" /db_xref="GeneID:10103494" CDS 1528453..1528911 /locus_tag="Alide_1456" /inference="protein motif:PFAM:PF09278" /note="KEGG: dia:Dtpsy_1215 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR" /codon_start=1 /transl_table=11 /product="transcription regulator merr DNA binding protein" /protein_id="YP_004126104.1" /db_xref="GI:319762167" /db_xref="GO:0003700" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR015358" /db_xref="GeneID:10103494" /translation="MLKQSPRHRIGNAARLSGVPPANIRYYEKEGLLPAQARADNRYR LYSDEEVHRLRFVRLCRAMDMSLDEVRTLLALDVAAPTADHAACATLDEHLDHVRTRL AELRTLEQELLALRERCDGTGGHCHVIEALHERADADPVPAPAPLARRHV" misc_feature 1528474..1528848 /locus_tag="Alide_1456" /note="Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators; Region: HTH_CadR-PbrR; cd04784" /db_xref="CDD:133411" misc_feature 1528477..1528848 /locus_tag="Alide_1456" /note="Cd(II)/Pb(II)-responsive transcriptional regulator; Region: CadR-PbrR; TIGR02047" /db_xref="CDD:131102" misc_feature order(1528477..1528485,1528525..1528527,1528576..1528584) /locus_tag="Alide_1456" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133411" misc_feature order(1528618..1528620,1528627..1528629,1528639..1528644, 1528669..1528671,1528702..1528707,1528714..1528716, 1528723..1528725,1528735..1528737,1528753..1528755, 1528765..1528767,1528774..1528779,1528798..1528800, 1528813..1528815,1528828..1528830,1528834..1528836) /locus_tag="Alide_1456" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133411" misc_feature order(1528702..1528704,1528807..1528809,1528828..1528830) /locus_tag="Alide_1456" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:133411" gene 1529012..1529827 /locus_tag="Alide_1457" /db_xref="GeneID:10103495" CDS 1529012..1529827 /locus_tag="Alide_1457" /inference="protein motif:PFAM:PF02405" /note="PFAM: protein of unknown function DUF140; KEGG: dia:Dtpsy_1216 protein of unknown function DUF140" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126105.1" /db_xref="GI:319762168" /db_xref="InterPro:IPR003453" /db_xref="GeneID:10103495" /translation="MTTTGLYPASLPRRAWALAVRWALAWWRIIDLGAVVLVLVLSPS SYRPAARERLARQMLADTAPILLGFTALAALLSLVITHIVVVTALSYGLTRYALEMVI RVLVLELIPLTAALFVAMRTTIPSGVQLARLRQTGRLQALRERGADPVRMELLPRVLA GVHASITLAALSCAVALVMAYLGVYGFNTAGLPAYTRMFGQVFTPSITLVFALKTLLF SLAVALIPMASGLYPPHSGTARDRQDQTGQGGLARMFAVLLLIETVSLMGNYY" misc_feature 1529225..1529707 /locus_tag="Alide_1457" /note="Domain of unknown function DUF140; Region: DUF140; cl00510" /db_xref="CDD:186046" gene 1529849..1530832 /locus_tag="Alide_1458" /db_xref="GeneID:10103496" CDS 1529849..1530832 /locus_tag="Alide_1458" /inference="protein motif:PFAM:PF02470" /note="PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_1217 mammalian cell entry related domain protein" /codon_start=1 /transl_table=11 /product="mammalian cell entry related domain protein" /protein_id="YP_004126106.1" /db_xref="GI:319762169" /db_xref="InterPro:IPR003399" /db_xref="GeneID:10103496" /translation="MNEPLPPPAPEELLRPVAHLRLKAAALLLLTLALIVGSVLYLLY ARGAFEPTQPLVLTTDDSEGVSVGMDMTFSGFPIGRVRRIELAGDGNVRILVDVAQRD AHWLRESSVFTLVRGLVGGTAIKAYSGVLTDPPLAAGAERPVLRGDATAEIPQLMATA RQLLDNLQQLTAQESALGATLAQVRQLSERMNAPGGALGVLMGNEADARKVLQTLERT NQLLARIDAMAARADRQVFGAAGAPGLVPELRAAVVQMNGLLQDARQSLLRVDAVLAE AQAVGANAREATTDLGALRAQVEASLRKVDGLVNEINRKWPFARETELQLP" misc_feature 1529981..1530757 /locus_tag="Alide_1458" /note="ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463" /db_xref="CDD:31652" misc_feature 1529999..1530220 /locus_tag="Alide_1458" /note="mce related protein; Region: MCE; cl03606" /db_xref="CDD:186584" gene 1530996..1531679 /locus_tag="Alide_1459" /db_xref="GeneID:10103497" CDS 1530996..1531679 /locus_tag="Alide_1459" /inference="similar to AA sequence:KEGG:Dtpsy_1218" /note="KEGG: dia:Dtpsy_1218 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126107.1" /db_xref="GI:319762170" /db_xref="GeneID:10103497" /translation="MKPLPCTVPLAALLAALLMTACGSRPPVPDWQMNAHGAAERATA AYLAGEDRVAQQEWARARAEVARTGRPGLLARVELMRCAAQAASLEDGACPAFEPLRP DAAPPELAYADYLAGRATPAQAALLPPAQRAAAASVDAIAAISDPLARLVAAGAAMQS GRATPQLLVLASDTAAAQGWRRPLLAWLLLRAQRAQAAGDTALADALRRRIVVIESGG APAAQAPKN" sig_peptide 1530996..1531067 /locus_tag="Alide_1459" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.918) with cleavage site probability 0.474 at residue 24" gene complement(1531661..1532494) /locus_tag="Alide_1460" /db_xref="GeneID:10103498" CDS complement(1531661..1532494) /locus_tag="Alide_1460" /inference="similar to AA sequence:KEGG:Vapar_0122" /note="KEGG: vap:Vapar_0122 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126108.1" /db_xref="GI:319762171" /db_xref="GeneID:10103498" /translation="MQHPGTAQIRARRAAFRQLHAAGCFAIPNPWDAGSARWLAGLGF AALATTSSGLAWSRGLPDGKMTLPQVLAHLREMVAATDLPVNADFEHGFAQDAEGVAH NVQQAIATGVAGLSIEDSTGDPAAPLLPLDSAVARMRAARAAIDASGEDVMLVGRAEN FFVGHPDLDDAIARLRAYAEAGADCLYAPGIATREQIAAVVAAVAPRPVNVLVGAAGA LTMQDLAALGVRRVSVGGALARAAWGGFDRAARLLATQGRFDGFAGALPGKELNQFFG A" misc_feature complement(1531667..1532440) /locus_tag="Alide_1460" /note="PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]; Region: PrpB; COG2513" /db_xref="CDD:32583" misc_feature complement(1531742..1532440) /locus_tag="Alide_1460" /note="Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377" /db_xref="CDD:119340" misc_feature complement(order(1531742..1531750,1531754..1531762, 1531766..1531774,1532063..1532065,1532072..1532077, 1532084..1532086,1532093..1532095,1532099..1532101, 1532168..1532170,1532177..1532179,1532189..1532194, 1532213..1532215,1532255..1532260,1532267..1532272, 1532276..1532281,1532288..1532293,1532297..1532308, 1532312..1532317,1532324..1532329,1532339..1532341, 1532360..1532368,1532372..1532374,1532381..1532386, 1532390..1532404,1532408..1532419,1532423..1532425)) /locus_tag="Alide_1460" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:119340" misc_feature complement(order(1531790..1531792,1531853..1531855, 1531859..1531861,1531928..1531930,1532024..1532026, 1532141..1532143,1532225..1532227,1532231..1532233, 1532309..1532311,1532339..1532347,1532351..1532353)) /locus_tag="Alide_1460" /note="active site" /db_xref="CDD:119340" misc_feature complement(order(1532141..1532143,1532225..1532227, 1532231..1532233,1532309..1532311)) /locus_tag="Alide_1460" /note="Mg2+/Mn2+ binding site [ion binding]; other site" /db_xref="CDD:119340" gene complement(1532518..1534044) /locus_tag="Alide_1461" /db_xref="GeneID:10103499" CDS complement(1532518..1534044) /locus_tag="Alide_1461" /inference="protein motif:TFAM:TIGR00196" /note="KEGG: ajs:Ajs_2588 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain-containing protein" /codon_start=1 /transl_table=11 /product="carbohydrate kinase, yjef related protein" /protein_id="YP_004126109.1" /db_xref="GI:319762172" /db_xref="InterPro:IPR000631" /db_xref="InterPro:IPR004443" /db_xref="GeneID:10103499" /translation="MQRISPAHPHALFDTAATRRIEAAAAAALPPHTLMQRAGRATAR LALALAPHARTIWIACGGGNNGGDGLEAAMLLQRGGHPVIVTWLGTPGTLPADARRSW QRAREAGVRFADAPPPLGPQDLCVDALLGIGLTAQARPQPPDPRLTAWLAQMHADPAP TLCVDLPSGLIADTGQFAPGLAPATAGAPAAARHTLALLTLKSGLFTGHGRDAAGSVW FDDLGVAAPAEAPGAWLAGPPPAAPRAHASHKGSYGDVAIVGGEGLAARGMGMTGAAL LAACAALHGGAGRVMVALLDGGAATALPQQPELMLRRFDALALQSGAVVCGCGGGAAV AAVLPQVLREARRLVLDADALNAIAADPQLQRQLRERALRPESATVLTPHPLEAARLL ACDTAAVQADRLAAARALADRFGCTALLKGSGSVVATPGQPPRINPTGNALLATGGTG DVLAGLAGARLAAAAQADAAAAFDAASHACWLHGAAADQWPRARALTASALAQALGRA " misc_feature complement(1533517..1533960) /locus_tag="Alide_1461" /note="YjeF-related protein N-terminus; Region: YjeF_N; cl00318" /db_xref="CDD:193767" misc_feature complement(<1532731..>1532910) /locus_tag="Alide_1461" /note="ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-...; Region: ribokinase_pfkB_like; cl00192" /db_xref="CDD:193700" gene complement(1534074..1535315) /locus_tag="Alide_1462" /db_xref="GeneID:10103500" CDS complement(1534074..1535315) /locus_tag="Alide_1462" /EC_number="1.4.99.1" /inference="protein motif:PRIAM:1.4.99.1" /note="KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="d-amino-acid dehydrogenase" /protein_id="YP_004126110.1" /db_xref="GI:319762173" /db_xref="InterPro:IPR006076" /db_xref="GeneID:10103500" /translation="MQIAIVGAGIVGAATAYELAADGHEVTVFEQRGAAAEEASFGSA GLLAPALLVPWAVPGIGPQRCAWGGPTAPRLARGSGAAGLAWRWRWTQAGRRPEAPAL LAALEGLGRYSLARTRALVQQLEVDIESSRGALVLLRRPEDVEQLQPALQTLRDAGTA VRDVDADTARLIEPGLSADAPLAGALHAPDGEAGNCRLFAQILRQAAQDLGARFVFGA RVQALGGNPAGLQVAGEDAPRRADAVVLCTGLASTALLRPLGLRLPMAAVHGYSISAP LREDTHAPQGVVIDPLHRLSIARQGQRVRVSGGAELGHAGGAHHAPTLQTMYLALSGW FPGGALTSSPQVQVWRGARPTLPDGAPVIGAGGPRGLWINAGHGACGWAQACGSARAL ADLIAGRAPDVDLQPFGIQRF" misc_feature complement(1534077..>1534982) /locus_tag="Alide_1462" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" gene complement(1535370..1536716) /locus_tag="Alide_1463" /db_xref="GeneID:10103501" CDS complement(1535370..1536716) /locus_tag="Alide_1463" /inference="protein motif:PFAM:PF01425" /note="PFAM: Amidase; KEGG: ajs:Ajs_2586 amidase" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_004126111.1" /db_xref="GI:319762174" /db_xref="GO:0016491" /db_xref="InterPro:IPR000120" /db_xref="InterPro:IPR020556" /db_xref="GeneID:10103501" /translation="MLADLVFTRSQVAAGHCSAPQELERSIAAAQGPACAHVFRQTCH EEARAAAAAPGVARLPLAGLAVSVKDLFDIRGMVTAAGSTVLADAPPAPADCTAVARL RRAGAAIVGHTHMVEFAFSGVGVNPHFGTPAAHDARHGALPGPARVPGGSSSGAGVSV ATGAAFIALGSDTGGSIRIPAALNGVVGFKNTARLVPTDGAVPLSTTLDTACALTRSV RDAIVAHEILAARRVTRSPAPLAAWRLAVPRTLFLDGMDGAVATAFERTLATLRRAGA RIDEIALPETAELAQINATGGFSAAESHAWHRALLQRHAGAYDPRVRSRIERGAAMSA ADYIDLLHARRAWIAHMEAAMAGYDALLSPTVPIVAPTIESVAPGGERDAEFFRVNGL LLRNTSVVNMLDGCALSLPCHHAGELPVGLMAWHAALHDDAVLNIGLLIERELQEQ" misc_feature complement(1535379..1536716) /locus_tag="Alide_1463" /note="amidase; Provisional; Region: PRK07056" /db_xref="CDD:180813" misc_feature complement(1535376..1536518) /locus_tag="Alide_1463" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene 1536935..1537687 /locus_tag="Alide_1464" /db_xref="GeneID:10103502" CDS 1536935..1537687 /locus_tag="Alide_1464" /inference="protein motif:TFAM:TIGR01011" /note="KEGG: ajs:Ajs_2585 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2" /codon_start=1 /transl_table=11 /product="ribosomal protein s2" /protein_id="YP_004126112.1" /db_xref="GI:319762175" /db_xref="GO:0003735" /db_xref="InterPro:IPR001865" /db_xref="InterPro:IPR005706" /db_xref="InterPro:IPR018130" /db_xref="GeneID:10103502" /translation="MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEK SLPMFQEAQKFAKQLAANRGTILMVGTKRQARELVAEQAQRAGVPYVDQRWLGGMLTN FKTVKTSIKRLKDMKAQQEAGLESMSKKEQLMFSRELEKLEKDIGGIQDMNALPDAIF VIDVGYHKIAVAEAKKLGIPLIGVVDSNHSPEGIDYVIPGNDDSAKAVALYARGIADA ILEGRANAVNDVVKAAAGEGSDEFVEVDETAA" misc_feature 1536956..1537597 /locus_tag="Alide_1464" /note="Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425" /db_xref="CDD:100106" misc_feature order(1537004..1537009,1537034..1537042,1537214..1537216, 1537220..1537228,1537235..1537240,1537451..1537453, 1537460..1537462) /locus_tag="Alide_1464" /note="rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:100106" misc_feature order(1537457..1537462,1537466..1537468,1537508..1537519) /locus_tag="Alide_1464" /note="S8 interaction site; other site" /db_xref="CDD:100106" misc_feature 1537562..1537579 /locus_tag="Alide_1464" /note="putative laminin-1 binding site; other site" /db_xref="CDD:100106" gene 1537802..1538698 /locus_tag="Alide_1465" /db_xref="GeneID:10103503" CDS 1537802..1538698 /locus_tag="Alide_1465" /inference="protein motif:TFAM:TIGR00116" /note="KEGG: dia:Dtpsy_1224 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein" /codon_start=1 /transl_table=11 /product="translation elongation factor ts" /protein_id="YP_004126113.1" /db_xref="GI:319762176" /db_xref="GO:0003746" /db_xref="InterPro:IPR000449" /db_xref="InterPro:IPR001760" /db_xref="InterPro:IPR001816" /db_xref="InterPro:IPR014039" /db_xref="InterPro:IPR018101" /db_xref="GeneID:10103503" /translation="MAAITASMVAELRGKTDAPMMECKKALTEAGGDMAKAEELLRVK LGTKAGKAASRVTAEGVVAASISGDVGALIEVNSETDFVSKNDSFIAMANAAAKLVAE HNPADIEALGTLAYEQDGFGPTLEDVRKGLIGKIGENMSFRRFKRFAGTSLAHYLHGS RIGVVVEYEGDATAAKDVAMHVAAMKPVALTSADVPAELIERERSVATAKAAESGKPA DIVAKMVEGSVQKYLKEVSLADQVFVKAADGKQTVAQMLKAANTTVKGFTLYVVGEGI EKKTDDFAAEVAAQVAAAKAGA" misc_feature 1537802..1538650 /locus_tag="Alide_1465" /note="elongation factor Ts; Provisional; Region: tsf; PRK09377" /db_xref="CDD:181810" misc_feature 1537811..1537924 /locus_tag="Alide_1465" /note="Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been...; Region: UBA; cl00153" /db_xref="CDD:193684" misc_feature 1537970..>1538116 /locus_tag="Alide_1465" /note="Elongation factor TS; Region: EF_TS; pfam00889" /db_xref="CDD:189759" misc_feature <1538318..1538623 /locus_tag="Alide_1465" /note="Elongation factor TS; Region: EF_TS; pfam00889" /db_xref="CDD:189759" gene 1538752..1539474 /locus_tag="Alide_1466" /db_xref="GeneID:10103504" CDS 1538752..1539474 /locus_tag="Alide_1466" /inference="protein motif:TFAM:TIGR02075" /note="KEGG: dia:Dtpsy_1225 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase" /codon_start=1 /transl_table=11 /product="uridylate kinase" /protein_id="YP_004126114.1" /db_xref="GI:319762177" /db_xref="GO:0033862" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR011817" /db_xref="InterPro:IPR015963" /db_xref="GeneID:10103504" /translation="MTSATPAHKRILLKLSGEALMGDDAFGINRNTIVRMVGEVAEVT RLGVQVAVVIGGGNIFRGVAGGAEGMDRATADYMGMLATVMNSLALADAMDKQGVTAR VMSAIDIQQVVEPYVRPKALQYLEEGKVVVFAAGTGNPFFTTDTAAALRGAEIGAELV LKATKVDGVYTADPMKDPQATRYARLTFDEAMVRNLGIMDATAFALCRDQKLPIRVFS ILKPGALKRVVMGEDEGTLVYA" misc_feature 1538776..1539468 /locus_tag="Alide_1466" /note="UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control...; Region: AAK_UMPK-PyrH-Ec; cd04254" /db_xref="CDD:58620" misc_feature order(1538791..1538793,1538800..1538805,1538914..1538922, 1539181..1539186,1539241..1539246,1539253..1539255, 1539259..1539261,1539265..1539270) /locus_tag="Alide_1466" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58620" misc_feature order(1538914..1538922,1538932..1538937,1538977..1538979, 1538986..1538991,1539160..1539162,1539166..1539171, 1539175..1539183) /locus_tag="Alide_1466" /note="uridine monophosphate binding site [chemical binding]; other site" /db_xref="CDD:58620" misc_feature order(1538953..1538958,1538980..1538985,1539004..1539006, 1539025..1539027,1539055..1539057,1539097..1539099, 1539109..1539111,1539118..1539120,1539136..1539138, 1539160..1539162,1539166..1539174,1539199..1539201, 1539208..1539213,1539379..1539381) /locus_tag="Alide_1466" /note="homohexameric interface [polypeptide binding]; other site" /db_xref="CDD:58620" gene 1539524..1540084 /locus_tag="Alide_1467" /db_xref="GeneID:10103505" CDS 1539524..1540084 /locus_tag="Alide_1467" /inference="protein motif:TFAM:TIGR00496" /note="KEGG: dia:Dtpsy_1226 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor" /codon_start=1 /transl_table=11 /product="ribosome recycling factor" /protein_id="YP_004126115.1" /db_xref="GI:319762178" /db_xref="InterPro:IPR002661" /db_xref="InterPro:IPR015998" /db_xref="GeneID:10103505" /translation="MTIAEIKKNLDAKMDQSIAALKNNLSKVRTGRANPALLDSIHVE YYGSMVPLSQVANVSLLDARTISVQPWEKNMGAKVEKAIRESDLGLNPASMGDLIRVP MPPMSEERRKEMTKLARNEGENAKVAVRNLRRDANEAVKKLVKEKLASEDEQKRAEAD IQKTTDKHIAEIDALVAAKEQDILAI" misc_feature 1539539..1540075 /locus_tag="Alide_1467" /note="Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are 'recycled' and ready for another round of...; Region: RRF; cd00520" /db_xref="CDD:29621" misc_feature order(1539611..1539622,1539830..1539841) /locus_tag="Alide_1467" /note="hinge region; other site" /db_xref="CDD:29621" gene 1540096..1540833 /locus_tag="Alide_1468" /db_xref="GeneID:10103506" CDS 1540096..1540833 /locus_tag="Alide_1468" /EC_number="2.5.1.31" /inference="protein motif:TFAM:TIGR00055" /note="TIGRFAM: undecaprenyl diphosphate synthase; KEGG: dia:Dtpsy_1227 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase" /codon_start=1 /transl_table=11 /product="undecaprenyl diphosphate synthase" /protein_id="YP_004126116.1" /db_xref="GI:319762179" /db_xref="GO:0033862" /db_xref="InterPro:IPR001441" /db_xref="InterPro:IPR018520" /db_xref="GeneID:10103506" /translation="MSTTAQTAIPHHIAIVMDGNGRWATRRFLPRLAGHRQGVESLRR CVRACVARGVGVLTVFAFSSENWNRPADEVSGLMDLLAKALAREVPQLSRDGVRLHFV GEKSGLSDKVRDGLRQAEAATAGNDRLVLNVCFNYGGRWDIAQAAAQLAARGEPITES SLHAAMGMAHVPDPDLLIRTGGEKRISNFLLWQAAYTELYFSDRLWPDFDEAALDEAI ADYAARERRFGRTSEQLQAAAPGSLRA" misc_feature 1540123..1540716 /locus_tag="Alide_1468" /note="Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cl00230" /db_xref="CDD:193723" misc_feature 1540147..1540149 /locus_tag="Alide_1468" /note="catalytic residue [active]" /db_xref="CDD:29593" misc_feature 1540150..1540161 /locus_tag="Alide_1468" /note="putative FPP diphosphate binding site; other site" /db_xref="CDD:29593" misc_feature order(1540270..1540284,1540324..1540329,1540333..1540341, 1540420..1540422,1540441..1540443,1540486..1540488, 1540492..1540494) /locus_tag="Alide_1468" /note="putative FPP binding hydrophobic cleft; other site" /db_xref="CDD:29593" misc_feature order(1540513..1540515,1540537..1540539,1540549..1540551, 1540564..1540566,1540645..1540650,1540657..1540659, 1540669..1540671,1540678..1540680,1540690..1540692) /locus_tag="Alide_1468" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29593" misc_feature order(1540630..1540632,1540648..1540650) /locus_tag="Alide_1468" /note="putative IPP diphosphate binding site; other site" /db_xref="CDD:29593" gene 1540872..1541717 /locus_tag="Alide_1469" /db_xref="GeneID:10103507" CDS 1540872..1541717 /locus_tag="Alide_1469" /inference="protein motif:PFAM:PF01148" /note="PFAM: phosphatidate cytidylyltransferase; KEGG: dia:Dtpsy_1228 phosphatidate cytidylyltransferase" /codon_start=1 /transl_table=11 /product="phosphatidate cytidylyltransferase" /protein_id="YP_004126117.1" /db_xref="GI:319762180" /db_xref="GO:0003746" /db_xref="InterPro:IPR000374" /db_xref="GeneID:10103507" /translation="MLKQRVITALVLLAILLPALFYPSPVPFAAVALVFMGAGAWEWG RLNGLAGAASVGLGAVCVAMCGAAWATGWLHQPLPWLWAIGGGAWVLGGALLLRGGVA GWPHVPRALRVVGGVLALWLAWLAVAQARVAGINYLLSVLTLVWMADIAAYFAGRAFG LRFTRSKLAPAISPGKSWEGVWGGMLGVLLLAVCWAWADAHWHAQVSSLYSHLARRGW WLLPIGAVFMAAMSVVGDLVESLIKRSAGVKDSSGLLPGHGGVLDRIDALLPTLPLAM MLSQF" sig_peptide 1540872..1540961 /locus_tag="Alide_1469" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.937 at residue 30" misc_feature <1541274..1541669 /locus_tag="Alide_1469" /note="Cytidylyltransferase family; Region: CTP_transf_1; cl00347" /db_xref="CDD:185926" gene 1541721..1542896 /locus_tag="Alide_1470" /db_xref="GeneID:10103508" CDS 1541721..1542896 /locus_tag="Alide_1470" /EC_number="1.1.1.267" /inference="protein motif:TFAM:TIGR00243" /note="TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dia:Dtpsy_1229 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein" /codon_start=1 /transl_table=11 /product="1-deoxy-d-xylulose 5-phosphate reductoisomerase" /protein_id="YP_004126118.1" /db_xref="GI:319762181" /db_xref="GO:0030604" /db_xref="GO:0046872" /db_xref="InterPro:IPR003821" /db_xref="InterPro:IPR013512" /db_xref="InterPro:IPR013644" /db_xref="GeneID:10103508" /translation="MKQRLTILGSTGSIGTSTLDVVARHPDRYEVFALSAATQVDLML AQCARFRPRYAVMASAEHARQLDEKIKANGLATQVLQAPEALETIASHEQVDAVMAAI VGAAGLAPCLAAARAGKRLLLANKEALVVGGEVFMKAVRDGGATLLPIDSEHSAIFQS LPEDPATWARRVQHVLLTASGGPFRTRDPATLRGVTPDEACAHPNFSMGRKISIDSAT MMNKALEVIEARWLFDLTPEQIRVVIHPQQIIHSMVQFRDASVIAQLGTPDMRVPIAC GLAWPERVESGAAALDFTQLAALTFEEADARRFPGLHLSWQALAAAPGTTAVLNAANE VAVEAFLQRRIRFDQIHALNLATLEAVQPSNPDTLQALLALDAQARAAARSLVQRFN" misc_feature 1541724..1542821 /locus_tag="Alide_1470" /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional; Region: PRK05447" /db_xref="CDD:180089" misc_feature 1541733..1542119 /locus_tag="Alide_1470" /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase; Region: DXP_reductoisom; pfam02670" /db_xref="CDD:190383" misc_feature 1542159..1542419 /locus_tag="Alide_1470" /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; Region: DXP_redisom_C; pfam08436" /db_xref="CDD:192038" gene 1542999..1544360 /locus_tag="Alide_1471" /db_xref="GeneID:10103509" CDS 1542999..1544360 /locus_tag="Alide_1471" /inference="protein motif:TFAM:TIGR00054" /note="TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_2578 peptidase RseP; SMART: PDZ/DHR/GLGF domain protein" /codon_start=1 /transl_table=11 /product="membrane-associated zinc metalloprotease" /protein_id="YP_004126119.1" /db_xref="GI:319762182" /db_xref="GO:0004222" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR004387" /db_xref="InterPro:IPR008915" /db_xref="GeneID:10103509" /translation="MLLTIAAFAAALGVLIAVHEYGHYRVAVACGVKVLRFSIGFGRP LLRWQPKGSPTEFVIGAFPLGGYVRMLDEREAPVAPEERHLAFNTRPLRARAAIVAAG PLANLLLAVLLYAAVNWSGVDEPKAMLSSPVAGSIAQRAGVQGGEQVVGAAIGEDEPE PVRSFEELRWVLTRGALDAENVRLLLQPVRGAQREVVLPLEGMQVREADAQLFRTIGI VGPWTRPVLGEVMAGGAAERAGLHPGDLVLRLGGTDVVDGAQLRDLIRGSVRDGKPLT QVWRVDREGRMLDVTVTPQLVADATGPVGRIGAYVGNPPEMVNVRYGPVEGLWKGVER TWEVSVLTLRMMGRMVIGEASIKNLSGPLTIADYAGRSASMGLTQYLAFLALISVSLG VLNLLPLPVLDGGHLMYYLWEGLTGRSVSEAWMDRLQRTGVVVLLLMMSIALFNDLTR LFG" misc_feature 1543053..1544351 /locus_tag="Alide_1471" /note="zinc metallopeptidase RseP; Provisional; Region: PRK10779" /db_xref="CDD:182723" misc_feature 1543053..>1543292 /locus_tag="Alide_1471" /note="RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163" /db_xref="CDD:100084" misc_feature order(1543053..1543058,1543065..1543067) /locus_tag="Alide_1471" /note="active site" /db_xref="CDD:100084" misc_feature 1543644..1543880 /locus_tag="Alide_1471" /note="PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most...; Region: PDZ_metalloprotease; cd00989" /db_xref="CDD:29046" misc_feature order(1543644..1543646,1543650..1543652,1543779..1543784, 1543791..1543796) /locus_tag="Alide_1471" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29046" misc_feature <1544139..1544348 /locus_tag="Alide_1471" /note="Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic...; Region: S2P-M50; cl10020" /db_xref="CDD:127338" misc_feature 1544181..1544192 /locus_tag="Alide_1471" /note="putative substrate binding region [chemical binding]; other site" /db_xref="CDD:100078" gene 1544406..1546703 /locus_tag="Alide_1472" /db_xref="GeneID:10103510" CDS 1544406..1546703 /locus_tag="Alide_1472" /inference="protein motif:TFAM:TIGR03303" /note="KEGG: dia:Dtpsy_1231 outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein" /codon_start=1 /transl_table=11 /product="outer membrane protein assembly complex, yaet protein" /protein_id="YP_004126120.1" /db_xref="GI:319762183" /db_xref="InterPro:IPR000184" /db_xref="InterPro:IPR010827" /db_xref="InterPro:IPR016474" /db_xref="GeneID:10103510" /translation="MRKHINRLGVRTVSAVAAMVFAANAAWALAPFKVQDIRVEGLQR VEPGTIFASLPLRVGDEYNDEKGAAAIRALFALGLFKDVRLEASGNVLVVVVEERPTI ADVEFAGTKEFDKDTLKKAMRDVGLTEGRPFDKALADRAEQELKRQYINRSLYGAEVV TTVTPIERNRVNLTFTVTEGEPAKIKEIRIVGNQAFGESTLKGLFDQDTGGWMSWYTK SNRYSRAKLNADLETLRSYYLARGYLEFRIDSTQVAISPDKQDISITINVTEGQRYVV SGVKLEGNYLDRDDEFKSLVTIRPGEPYNADRVAETTKAFTDHFGNFGFAFARVEAVP EIDRENNRVALVLRAEPSRRAYVRRIQVSGNNRTRDEVIRREFRQYEASWYDGDKIKL SRDRVDRLGFFTEVNVETQEVPGAPDQVDLVINVAEKPTGSLQLGAGFSSAEKVALSF AIKQENVFGSGNYLGVDVNTSKYRRTLVFSTTDPYFTQDGISRTLDVYYRTAKPYENQ GGNYELVTAGTSIRFGVPFSETDTVFFGGGLEQTQIKVGTNIPAAYLVYAEKFGDTSW SLPLTIGWSRDDRDSALAPNSGRYQRLNTEWSVAGDARYVRGNYQIQQYIPLNKQYTL AFNGELGMGKGMNGRPFPVFKNFYSGGLGSVRGFDQGTLGPRDVTGASLGGPKKITLN AEFIAPVPGAGNDRTLRWFAFVDAGNVYGEDENWELSDLRASAGLGLSWISPLGPLRI AFAQPVRKFAGDRIQKLQFQIGTSF" sig_peptide 1544406..1544483 /locus_tag="Alide_1472" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.943) with cleavage site probability 0.719 at residue 26" misc_feature 1544499..1546700 /locus_tag="Alide_1472" /note="outer membrane protein assembly complex, YaeT protein; Region: OM_YaeT; TIGR03303" /db_xref="CDD:163210" misc_feature 1544499..1544702 /locus_tag="Alide_1472" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1544703..1544945 /locus_tag="Alide_1472" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1544952..1545218 /locus_tag="Alide_1472" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1545225..1545458 /locus_tag="Alide_1472" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1545468..1545692 /locus_tag="Alide_1472" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1545771..1546700 /locus_tag="Alide_1472" /note="Surface antigen; Region: Bac_surface_Ag; cl03097" /db_xref="CDD:155280" gene 1546703..1547227 /locus_tag="Alide_1473" /db_xref="GeneID:10103511" CDS 1546703..1547227 /locus_tag="Alide_1473" /inference="protein motif:PFAM:PF03938" /note="PFAM: outer membrane chaperone Skp (OmpH); KEGG: ajs:Ajs_2576 outer membrane chaperone Skp (OmpH)" /codon_start=1 /transl_table=11 /product="outer membrane chaperone skp (omph)" /protein_id="YP_004126121.1" /db_xref="GI:319762184" /db_xref="GO:0005515" /db_xref="InterPro:IPR005632" /db_xref="GeneID:10103511" /translation="MKSLSRHIPLVLLLGSLAAAVPAQAQEFKAGFVNTDRIFREANT AKAAQAKLEQEFSKREKELVDMGNALKSATEKFEREAPTMAESQRVARQRQLVDQDRD FQRKRREFQEDLGARKNEELGQVLERANRVVKQLAEAEKYDVILQEAVYINPKHDITD KVIKAMNAAGNSGK" sig_peptide 1546703..1546780 /locus_tag="Alide_1473" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 26" misc_feature 1546772..1547203 /locus_tag="Alide_1473" /note="Outer membrane protein (OmpH-like); Region: OmpH; cl08146" /db_xref="CDD:195657" gene 1547256..1548254 /locus_tag="Alide_1474" /db_xref="GeneID:10103512" CDS 1547256..1548254 /locus_tag="Alide_1474" /inference="protein motif:TFAM:TIGR01853" /note="KEGG: dia:Dtpsy_1233 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein" /codon_start=1 /transl_table=11 /product="udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase" /protein_id="YP_004126122.1" /db_xref="GI:319762185" /db_xref="GO:0004222" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR007691" /db_xref="InterPro:IPR020573" /db_xref="GeneID:10103512" /translation="MSLRLGQIVDALGGRLEGADRDTEIQRIAPLESAGPGDLAFLSN PRYRSQLAASRAACVIVAPGMREAALERGACIVADQPYVYFARVTQLWVHAQGLGARA GIHPSAVVDAQAQVHPTATIGPLCVVERGAVIGAHTVLKSRVTVGERCTVGARCILHP GVVIGADGFGFAHERGEWVKIEQLGAVRIGDDVEIGANTCIDRGALDDTVIEDGVKLD NLIQIAHNVHIGRHTAMAGCSAVAGSTRIGAHCTIAGAASIVGHLELADNVHISTNTV VTHSIARPGQYTGVFPMDDNAKWEKNAATLRQLYRLRERIKALEQARKDDQSATQQ" misc_feature 1547256..1548233 /locus_tag="Alide_1474" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional; Region: lpxD; PRK00892" /db_xref="CDD:179158" misc_feature 1547319..1547531 /locus_tag="Alide_1474" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Region: LpxD; pfam04613" /db_xref="CDD:146990" misc_feature 1547547..1548152 /locus_tag="Alide_1474" /note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-...; Region: LbH_LpxD; cd03352" /db_xref="CDD:100043" misc_feature order(1547574..1547576,1547586..1547591,1547643..1547645, 1547682..1547684,1547688..1547690,1547694..1547696, 1547730..1547732,1547736..1547738,1547754..1547756, 1547760..1547762,1547793..1547801,1547835..1547837, 1547847..1547849,1547853..1547855,1547859..1547861, 1547868..1547876,1547901..1547903,1547907..1547915, 1547919..1547921,1547931..1547933,1547949..1547951, 1547955..1547957,1547967..1547975,1548003..1548005, 1548021..1548029,1548039..1548041,1548075..1548083, 1548135..1548137,1548147..1548149) /locus_tag="Alide_1474" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100043" misc_feature order(1547760..1547768,1547907..1547909,1547919..1547921, 1547928..1547933,1547961..1547966,1547979..1547987, 1548036..1548041,1548072..1548074) /locus_tag="Alide_1474" /note="active site" /db_xref="CDD:100043" misc_feature order(1547760..1547768,1547928..1547933,1547982..1547987, 1548036..1548041) /locus_tag="Alide_1474" /note="UDP-GlcNAc binding site [chemical binding]; other site" /db_xref="CDD:100043" misc_feature order(1547907..1547909,1547919..1547921,1547961..1547966, 1547979..1547981,1548072..1548074) /locus_tag="Alide_1474" /note="lipid binding site [chemical binding]; lipid-binding site" /db_xref="CDD:100043" gene 1548251..1548691 /locus_tag="Alide_1475" /db_xref="GeneID:10103513" CDS 1548251..1548691 /locus_tag="Alide_1475" /inference="protein motif:TFAM:TIGR01750" /note="KEGG: aav:Aave_1834 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ" /codon_start=1 /transl_table=11 /product="beta-hydroxyacyl-(acyl-carrier-protein) dehydratase fabz" /protein_id="YP_004126123.1" /db_xref="GI:319762186" /db_xref="GO:0016836" /db_xref="InterPro:IPR010084" /db_xref="InterPro:IPR013114" /db_xref="GeneID:10103513" /translation="MMDIHQILKLLPHRYPFLLVDRVVELDRGKRIQAIKNVTINEPF FTGHFPARPVMPGVLMLEALAQAAGLLSFDMMGEAPGDDKVFYFVGIDGARFKRPVEP GDQLILDVSLDRIKGGIYKFKGVARVGDSMACEAEIMCTMRTVA" misc_feature 1548281..1548679 /locus_tag="Alide_1475" /note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288" /db_xref="CDD:48033" gene 1548717..1549505 /locus_tag="Alide_1476" /db_xref="GeneID:10103514" CDS 1548717..1549505 /locus_tag="Alide_1476" /EC_number="2.3.1.129" /inference="protein motif:TFAM:TIGR01852" /note="TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: ajs:Ajs_2573 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein" /codon_start=1 /transl_table=11 /product="acyl-(acyl-carrier-protein)--udp-n- acetylglucosamine o-acyltransferase" /protein_id="YP_004126124.1" /db_xref="GI:319762187" /db_xref="GO:0008780" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR010137" /db_xref="GeneID:10103514" /translation="MTTIHPTAIVDPAAQLDPSVTVGPYAVIGPHVRIGARTSVGAHC VIEGHTTIGADNRIFQFASLGAEPQDKKYAGEPTRLVIGDRNTIREFCTFNTGTVQDQ GETRVGDDNWIMAYVHIAHDCVVGSQVILANSATLAGHVHVGDQVIIGGLTGVHQYSR VGAHAMAGFASHVSQDVPPFMMVDGNPLAVRGLNIEGLRRRGFSAQRVAALKQAYRLL YRQGLTLEAALSAMGELPHSHPEAEGDIALLRDFVAASRRGIAR" misc_feature 1548717..1549502 /locus_tag="Alide_1476" /note="UDP-N-acetylglucosamine acyltransferase; Provisional; Region: PRK05289" /db_xref="CDD:179994" misc_feature 1548726..1549496 /locus_tag="Alide_1476" /note="UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A...; Region: LbH_UDP-GlcNAc_AT; cd03351" /db_xref="CDD:100042" misc_feature order(1548921..1548923,1548930..1548932,1548999..1549001, 1549068..1549070,1549077..1549079,1549134..1549136, 1549182..1549187,1549221..1549223,1549296..1549298, 1549314..1549319) /locus_tag="Alide_1476" /note="active site" /db_xref="CDD:100042" gene 1549517..1550671 /locus_tag="Alide_1477" /db_xref="GeneID:10103515" CDS 1549517..1550671 /locus_tag="Alide_1477" /EC_number="2.4.1.182" /inference="protein motif:TFAM:TIGR00215" /note="PFAM: glycosyl transferase family 19; manually curated; KEGG: dia:Dtpsy_1236 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase" /codon_start=1 /transl_table=11 /product="lipid-a-disaccharide synthase" /protein_id="YP_004126125.1" /db_xref="GI:319762188" /db_xref="GO:0008915" /db_xref="InterPro:IPR003835" /db_xref="GeneID:10103515" /translation="MEHPPRVAMVAGETSGDLLAGLLLDGLRARWPGVASMGIGGPRM QERGFDAWWHSERLAVHGYSIELVRRLWGILQIRKALRVRLLADRPDVFIGVDAPDFN LGLERDLRAAGVKTVHFVCPSIWAWRADRVEKIRAAADHVLCIFPFEPELLARHGIAA TYVGHPLASVIPMAPDRLAARAQLGLTADDEVLAILPGSRSAEVAYIARPFFQAAALI RKARTAIKIVVPAVPALRGRIEQIARECGVLESLAIVTGQSHQVLAACDCTLIASGTA TLEAALFKRPMVIAYHMHPVSWRLMRRKQLQPWVGLPNILCRDFVVPELLQDAATPRA LAAAVQQWLDAPARDPGRIARLEQRFTALHEELQRDTPRLAAHAIAQILA" misc_feature 1549526..1550665 /locus_tag="Alide_1477" /note="lipid-A-disaccharide synthase; Reviewed; Region: lpxB; PRK00025" /db_xref="CDD:178802" misc_feature 1549745..1550521 /locus_tag="Alide_1477" /note="ipid-A-disaccharide synthase; Provisional; Region: PRK14089" /db_xref="CDD:184498" gene 1550646..1551266 /locus_tag="Alide_1478" /db_xref="GeneID:10103516" CDS 1550646..1551266 /locus_tag="Alide_1478" /EC_number="3.1.26.4" /inference="protein motif:PRIAM:3.1.26.4" /note="KEGG: dia:Dtpsy_1237 ribonuclease HII; PFAM: ribonuclease HII/HIII" /codon_start=1 /transl_table=11 /product="ribonuclease h" /protein_id="YP_004126126.1" /db_xref="GI:319762189" /db_xref="InterPro:IPR001352" /db_xref="GeneID:10103516" /translation="MPLPRSLPEQASFDWHPGGLVAGVDEAGRGPLAGPVVAAAVILD DQQPIVGLADSKALTAARRERLFDEIRAKALCCSVAEASVEEIDRLNILQATLLAMRR AVQGLRLKPTLALVDGNRLPRLDMPAEAIVKGDARVAAISAASILAKVTRDRWCAELH AQYPQYGFAGHKGYGTAEHLAALQAHGACPQHRRSFAPVARALALP" misc_feature 1550709..1551245 /locus_tag="Alide_1478" /note="bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182" /db_xref="CDD:187695" misc_feature order(1550718..1550729,1550919..1550927,1550934..1550936, 1550994..1550996,1551033..1551035,1551090..1551092) /locus_tag="Alide_1478" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:187695" misc_feature order(1550718..1550723,1550994..1550996,1551048..1551050) /locus_tag="Alide_1478" /note="active site" /db_xref="CDD:187695" gene 1551263..1552039 /locus_tag="Alide_1479" /db_xref="GeneID:10103517" CDS 1551263..1552039 /locus_tag="Alide_1479" /inference="protein motif:PFAM:PF00588" /note="PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dia:Dtpsy_1238 tRNA/rRNA methyltransferase (SpoU)" /codon_start=1 /transl_table=11 /product="tRNA/rRNA methyltransferase (spou)" /protein_id="YP_004126127.1" /db_xref="GI:319762190" /db_xref="GO:0003723" /db_xref="GO:0008173" /db_xref="InterPro:IPR001537" /db_xref="GeneID:10103517" /translation="MTAMQPVTIHSRDNALLKDLRRLSQDSTAYRKQGRVWLEGDHLC SAALARGQRPAIAVFSESFWPLAPEEYAQAATKNVVIADALWQDISGLESPARMGFVL PLPAQQALDAQSPTVVLDRLQDAGNVGSILRSASAFGFAQIAALKGTAALWSPKVLRA GMGAHFALRLVEGLDVQDIDRLRVPLLATSSHQGDWLHRAQLPWPCGWIMGHEGQGVS PDLQRRASRHIRIVQPGGEESLNVGAAAAICLHASAAARA" misc_feature 1551287..1551991 /locus_tag="Alide_1479" /note="rRNA methylases [Translation, ribosomal structure and biogenesis]; Region: SpoU; COG0566" /db_xref="CDD:30912" misc_feature 1551602..1551988 /locus_tag="Alide_1479" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene 1552355..1553599 /locus_tag="Alide_1480" /db_xref="GeneID:10103518" CDS 1552355..1553599 /locus_tag="Alide_1480" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: glo:Glov_1428 integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004126128.1" /db_xref="GI:319762191" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10103518" /translation="MKAKITTQLLAALSPSTTTYEVNDTELRGFQLRVQPTGTKTFLV AYRLRDGRKNRYVIGRTPQLTPAQARDEAKKVLGDVARGIDPNDDKRQQRREERKPTL EVFIDEHYAPWARAHLGTADKTLARMRVAFKEHFDKRLDSLTAWQFDKWKSERLKSGL KPTSVNRELASLRSALTKAVEWELIPEHPLRKVKQAKVDEDHRVRFLSDAEETRLREV LDERDGNARAARVRHNEWRRQRGHEALPLIAEGTFIDHIRPMILVTINTGLRRGELFK LKRSDIDMEKRMLKVRAAAAKSGKSRFIPLNDEAATMLTRWMDQHPAEDEELVFPGKD GAPLTNVDSAWGSIVRAVKLKDFHWHDMRHHFASRLVMAGVDLNTVRELLGHADLKMT LRYAHLAPEHKAMAVAKLIRSV" misc_feature 1553078..1553584 /locus_tag="Alide_1480" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature order(1553162..1553167,1553243..1553245,1553426..1553434, 1553537..1553539) /locus_tag="Alide_1480" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature order(1553162..1553164,1553243..1553245,1553432..1553434, 1553441..1553443,1553510..1553512,1553537..1553539) /locus_tag="Alide_1480" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature order(1553162..1553164,1553432..1553434,1553441..1553443, 1553510..1553512,1553537..1553539) /locus_tag="Alide_1480" /note="active site" /db_xref="CDD:29495" gene 1554055..1554378 /locus_tag="Alide_1481" /db_xref="GeneID:10103519" CDS 1554055..1554378 /locus_tag="Alide_1481" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126129.1" /db_xref="GI:319762192" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103519" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature 1554055..1554312 /locus_tag="Alide_1481" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1554375..1555289 /locus_tag="Alide_1482" /db_xref="GeneID:10103520" CDS 1554375..1555289 /locus_tag="Alide_1482" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126130.1" /db_xref="GI:319762193" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10103520" /translation="MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSAR AQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIVVARCTVERLMRAMGLQGARRG RAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAASDTSTKVST" misc_feature 1554435..1555271 /locus_tag="Alide_1482" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature 1554750..1555106 /locus_tag="Alide_1482" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 1555326..1555454 /locus_tag="Alide_1483" /pseudo /db_xref="GeneID:10103521" gene complement(1555666..1555741) /locus_tag="Alide_R0016" /note="tRNA-Thr3" /db_xref="GeneID:10103522" tRNA complement(1555666..1555741) /locus_tag="Alide_R0016" /product="tRNA-Thr" /db_xref="GeneID:10103522" gene complement(1555753..1556760) /locus_tag="Alide_1484" /db_xref="GeneID:10103523" CDS complement(1555753..1556760) /locus_tag="Alide_1484" /inference="protein motif:PFAM:PF00316" /note="PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: ctt:CtCNB1_2987 inositol" /codon_start=1 /transl_table=11 /product="inositol phosphatase/fructose-16-bisphosphatase" /protein_id="YP_004126131.1" /db_xref="GI:319762194" /db_xref="GO:0042578" /db_xref="InterPro:IPR000146" /db_xref="GeneID:10103523" /translation="MPERISLTRYLVEQQRVHGHIPSELRLLLEVVARACKRIAQAVN KGELGEVMGTAGTENVQGEVQKKLDIIANETLIEANEWGGHLAAMASEEMEGIYVVPN RYPQGEYLLMFDPLDGSSNIDVNVSIGTIFSVLKKPEGHPGVHDEDFLQPGRCQVAAG YCIYGPQTTLVLTVGDGVAMFTLDREQGSFVLIRENVQIPEDTREFAINMSNMRHWDA PVRRYIDECLAGKEGIRGKDFNMRWVASMVADVHRILSRGGIFMYPWDKREPNKPGKL RLMYEANPMGWLVEQAGGAATNGKQRILDIQPTQLHERVSVILGSKNEVERVTGYHNG I" misc_feature complement(1555765..1556727) /locus_tag="Alide_1484" /note="Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-...; Region: FBPase; cd00354" /db_xref="CDD:30130" misc_feature complement(order(1556353..1556355,1556434..1556439, 1556683..1556691,1556695..1556697,1556716..1556718, 1556725..1556727)) /locus_tag="Alide_1484" /note="AMP binding site [chemical binding]; other site" /db_xref="CDD:30130" misc_feature complement(order(1555918..1555920,1556413..1556415, 1556419..1556421,1556482..1556487,1556554..1556556)) /locus_tag="Alide_1484" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:30130" misc_feature complement(order(1555936..1555938,1555972..1555974, 1556020..1556022,1556032..1556037,1556125..1556127, 1556401..1556406,1556410..1556412)) /locus_tag="Alide_1484" /note="active site" /db_xref="CDD:30130" gene complement(1556781..1559489) /locus_tag="Alide_1485" /db_xref="GeneID:10103524" CDS complement(1556781..1559489) /locus_tag="Alide_1485" /inference="protein motif:TFAM:TIGR02414" /note="KEGG: dia:Dtpsy_2249 aminopeptidase N; TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase" /codon_start=1 /transl_table=11 /product="aminopeptidase n" /protein_id="YP_004126132.1" /db_xref="GI:319762195" /db_xref="GO:0008270" /db_xref="InterPro:IPR012779" /db_xref="InterPro:IPR014782" /db_xref="GeneID:10103524" /translation="MKEGHTKATQRLDYAPPAYWIDSVELTFDLDPAKTRVLNRMRLR RNPGVAPQPLRLDGEELNLARVMVNGAGSSFKMEGDKLVLENLPEGNDPFELEIFTTC APAKNTQLSGLYVSGDTFFTQCEAEGFRRITYFLDRPDVMASYQVLLRADKAQYPVLL SNGNLVESGELDGGRHFARWADPHRKPSYLFALVAGKLVAREQQIVSRAGKPHLLQVW VRPGDLGKTEHAMNSLMAAIAWDEARFGLSLDLERFMIVATSDFNMGAMENKGLNIFN TKYVLASEATATDVDFANIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEF SQDMAGSPSARAVKRIEDVRVLRTAQFPEDAGPMAHPVRPDSYVEINNFYTVTIYEKG AEVVRMQHNLVGREGFARGMKLYFERHDGHAVTCDDFVQAMADANPASPLALHLEQFK RWYSQAGTPHVKAVGQYDADARRYTLTLSQSCAATPGQPEKHPFVIPVALGLLGTDGR ALPLQLEGEAAAGGTERTVVLTEPSMTLAFVNVDSPPVPSLLRGFSAPVILDCEYGDA ELLALLTHDGDAFNRWEAGQRLMLRIAINAIADEEVTTDAAGQIHQNILPAALAQAMR DVLRHPQLDAAFKELVLTLPSESYIAEQLGVVDPQRIHAVREALRQQLAVALQADWAW AWEEHHAGGAHRPDAVSSGRRALAGLALSMLCLAARQSGDAVWPGKTYQRFKDAGNMT DRFNALSALVMSGHELAAPALARFHAMFKDDALVLDKWFALQAGSTDRGGNVLPAVKA LMKHPDFHIKNPNRARSVIFSYCSANPGAFHRQDAAGYVFWADRVLELDALNPQVAAR LARALDRWNRLAEPYRTAAREAIARVAAKPDLSGDVREVVTRALAD" misc_feature complement(1556784..1559489) /locus_tag="Alide_1485" /note="aminopeptidase N; Provisional; Region: pepN; PRK14015" /db_xref="CDD:184453" misc_feature complement(1556790..1559453) /locus_tag="Alide_1485" /note="Peptidase M1 family containing Aminopeptidase N; Region: M1_APN_1; cd09600" /db_xref="CDD:189007" misc_feature complement(order(1556934..1556936,1558323..1558325, 1558338..1558340,1558347..1558349,1558518..1558523, 1558575..1558577,1558584..1558589,1558596..1558601, 1558686..1558700,1559112..1559117,1559121..1559123)) /locus_tag="Alide_1485" /note="active site" /db_xref="CDD:189007" misc_feature complement(order(1558518..1558520,1558575..1558577, 1558587..1558589)) /locus_tag="Alide_1485" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:189007" gene complement(1559501..1560605) /locus_tag="Alide_1486" /db_xref="GeneID:10103525" CDS complement(join(1559501..1560523,1560525..1560605)) /locus_tag="Alide_1486" /inference="similar to AA sequence:KEGG:BURPS1710b_3602" /ribosomal_slippage /note="manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein" /codon_start=1 /transl_table=11 /product="peptide chain release factor 2" /protein_id="YP_004126133.1" /db_xref="GI:319762196" /db_xref="GeneID:10103525" /translation="MEAEHINQIGATLEDLANRTQELRRYLDYDAKYERLRTVNASLE DPNVWNDPKKAQELGKEKKLLDGVVLTLQKLTAELADNAELYEMSREEGDEAGLLAIE GEAAKLLPLIEELEFRRMFSKEADPLNCYIDIQAGAGGTEACDWAGMLLRQYLKYAER KGFKATVDEETPGDVAGIKSATIHIEGEYAYGLLRTETGVHRLVRKSPFDSSGGRHTS FASLFVYPEVDDSIEININPADVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIVVQC QDGRSQHSNRDVAWQRLRSKLYEHEMQKRMVEQQKLEDTKTDVGWGHQIRSYVLDNSR IKDLRTNVEVSATQKVLDGDLDVFIEASLKQGI" misc_feature complement(join(1559504..1560523,1560525..1560590)) /locus_tag="Alide_1486" /note="peptide chain release factor 2; Validated; Region: prfB; PRK00578" /db_xref="CDD:179072" misc_feature complement(1560014..>1560274) /locus_tag="Alide_1486" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" misc_feature complement(1559588..1559926) /locus_tag="Alide_1486" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" gene complement(1560674..1561678) /locus_tag="Alide_1487" /db_xref="GeneID:10103526" CDS complement(1560674..1561678) /locus_tag="Alide_1487" /EC_number="1.4.1.16" /inference="protein motif:TFAM:TIGR01921" /note="TIGRFAM: diaminopimelate dehydrogenase; KEGG: ajs:Ajs_2757 diaminopimelate dehydrogenase; PFAM: dihydrodipicolinate reductase" /codon_start=1 /transl_table=11 /product="diaminopimelate dehydrogenase" /protein_id="YP_004126134.1" /db_xref="GI:319762197" /db_xref="InterPro:IPR000846" /db_xref="InterPro:IPR010190" /db_xref="GeneID:10103526" /translation="MGLDNNARTAIRIGIVGYGNLGRGVEAAVARNSDMAVAGIYTRR DPAQIEPMGAGVPVHAMDSLPGHKGSIDVLVLCGGSKDDLPRQSPELAAHFSLVDSFD THARIPEHFAAVDAAAQAGRTTALISAGWDPGMFSINRVMGEALLPDGATYTFWGKGL SQGHSDAVRRVPGVAGGVQYTIPVDEAVAQVRSGLRPALTTREKHRRECFVVLEAGAD ASAVRKTIVTMPHYFDEYDTTVHFIGAEELAREHGAMPHGGFVIRSGNTSQENKQVIE YRLQLDSNPEFTSSVLVAYARAVHRMQQAGQWGCKTVFDVAPGLLSPRSAAELRAQLL " misc_feature complement(1560677..1561654) /locus_tag="Alide_1487" /note="diaminopimelate dehydrogenase; Region: DAP-DH; TIGR01921" /db_xref="CDD:162603" gene complement(1561801..1562733) /locus_tag="Alide_1488" /db_xref="GeneID:10103527" CDS complement(1561801..1562733) /locus_tag="Alide_1488" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_2246 alpha/beta hydrolase fold protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004126135.1" /db_xref="GI:319762198" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR000639" /db_xref="GeneID:10103527" /translation="MYQALRHARTESVPIRTLRYHVRLWGDALPGQPPLVLLHGWMDV GASYQFVVDAFGAAFAAGRLIIAPDWRGFGRSRLPGPCDGYPFADYLADLDQLLDHYA GGTPVDLAGHSMGGNVAMMYAGARPARIRRLVNLEGFGLPATQPAQAPGRYAQWMDEL RQFERGEMALKDYDSADGVAQRLMKTNPRLDAGKAAWLARHWAHKDAHGRWHIMGDAA HKIVNPQIYRVDEALALYEAITAPVLSVHASSGSLGRWGERYTLQEYLQRLAHVRDHC TAVVHDAGHMLHHDQPAQVARLIEDFVAAATPAG" misc_feature complement(1561840..1562631) /locus_tag="Alide_1488" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 1562853..1564181 /locus_tag="Alide_1489" /db_xref="GeneID:10103528" CDS 1562853..1564181 /locus_tag="Alide_1489" /inference="protein motif:PFAM:PF01547" /note="PFAM: extracellular solute-binding protein family 1; KEGG: dac:Daci_4801 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_004126136.1" /db_xref="GI:319762199" /db_xref="GO:0005215" /db_xref="InterPro:IPR006059" /db_xref="GeneID:10103528" /translation="MQRSILAMALAAAGLWGAAQTAAAGTVTVITSFPKELTTAYQKA FEAANPGIKVEILNKNTTASVAYIRELPEGQRPDVMWASAPDAFEVLASYKLLQGAPE VVNRSAPEKIGNYPLNDPKGMYYGQALAGYGIEWNTRYLKAHKLPVPKEWSDLVRPEY FGHIAISSPSRSGTTQLTVETILQGEGWDKGWTQLLQIMGNAAAVTDRSFAVPDGVNN GQYGIGIVIDFLALAGKYSGYPVDFTYPSMTAVVPANIALIAGAKNADEAKKFMAYTM SVPGQQLLFDPKIGRLPILPYSMLKPPAGYPVPQDIAKRAKVQFNTELSGQRYPVVIS LFDQMVTFRLKELQAATKAIHEAAAALKARPNARGGELLAQARSLAYTSLVGADNVKN PEFLELFRKSRRDVAVSKQLTGMEQMWSEKARANYERARQLAEEARGLAK" sig_peptide 1562853..1562927 /locus_tag="Alide_1489" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.746 at residue 25" misc_feature 1562979..1563818 /locus_tag="Alide_1489" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1564245..1565975 /locus_tag="Alide_1490" /db_xref="GeneID:10103529" CDS 1564245..1565975 /locus_tag="Alide_1490" /inference="protein motif:PFAM:PF00528" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_4800 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_004126137.1" /db_xref="GI:319762200" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10103529" /translation="MPATTLQTGARARSPRTLASPGPLIAFGLILAFLLCFLVLPVGT VIYTAFVTETGAPTLGHFGNFFGQLVFRESFFNSLWVALASTFFASVIAVPLAYLTVR FEFRGALLIQTLGVLPLIMPPFVGAVALQLIFGRSGSVNLLLDDWLGFTVPVMDGLVG VTFVESIHYFPFILLNLVAAMRNIDGAMEESALNLGAQGLRLFRRVIFPLAMPGYLAG AALVFVKVFDDLGTPLVMGVSNMLAPQAYLRITSVGVDDPLGYVISVIMIGFSILALW LAARVMKGRDYATLQKGGNALQKRRLGRWESLLAYGWILLVLAVVLAPHAGILLMSFA KVWSFSVLPDAYTLEHYATVFSDAGGMIGNTLLYCLLAAGLDVVIGTAIAYLILRTRL PARQWLDWLASAALAIPGLVLAIGYLRLFKGVQLPGSDRLVVQTWVLIMLAYAVRRLP YALRSCMAALQQVHVSLEEAAQSLGASRLSTMRRVMVPLMAGGILAGFVTSFITAAVE LSATLVLVSTESQAPMSLGIYLYMQSIAGRGPGAALGVLAVAVVGLGTYFSHRFVERS RAAVQPSSRA" misc_feature 1564467..1565066 /locus_tag="Alide_1490" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1564515..1564520,1564527..1564532,1564545..1564547, 1564575..1564586,1564590..1564619,1564626..1564631, 1564635..1564637,1564743..1564748,1564752..1564754, 1564758..1564760,1564767..1564772,1564776..1564778, 1564788..1564793,1564800..1564802,1564851..1564853, 1564893..1564898,1564905..1564907,1564926..1564937, 1564944..1564949,1564989..1564994,1565022..1565027, 1565034..1565039,1565043..1565048,1565055..1565060) /locus_tag="Alide_1490" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1564593..1564637,1564926..1564943) /locus_tag="Alide_1490" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1564635..1564637,1564725..1564727,1564944..1564946, 1564983..1564985,1564992..1564994,1565022..1565024) /locus_tag="Alide_1490" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1564803..1564841,1564857..1564862,1564872..1564874) /locus_tag="Alide_1490" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" misc_feature 1565328..1565855 /locus_tag="Alide_1490" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1565376..1565381,1565388..1565393,1565406..1565408, 1565436..1565447,1565451..1565480,1565487..1565492, 1565496..1565498,1565571..1565576,1565589..1565591, 1565595..1565597,1565604..1565609,1565613..1565615, 1565625..1565630,1565637..1565639,1565688..1565690, 1565730..1565735,1565742..1565744,1565763..1565774, 1565781..1565786,1565826..1565831) /locus_tag="Alide_1490" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1565454..1565498,1565763..1565780) /locus_tag="Alide_1490" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1565496..1565498,1565556..1565558,1565781..1565783, 1565820..1565822,1565829..1565831) /locus_tag="Alide_1490" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1565640..1565678,1565694..1565699,1565709..1565711) /locus_tag="Alide_1490" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1565979..1567064 /locus_tag="Alide_1491" /db_xref="GeneID:10103530" CDS 1565979..1567064 /locus_tag="Alide_1491" /inference="protein motif:PFAM:PF00005" /note="KEGG: dac:Daci_4799 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126138.1" /db_xref="GI:319762201" /db_xref="GO:0005215" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013611" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103530" /translation="MNQASLECRHISLSYGTTPVLRDIDLRIEPGEFFALLGPSGSGK STLLRLIAGFNQHQSGELLVDGQDISGVPPHLRNIGMVFQNYALWPHMTVWDNVAFGL VERRESRDAMRRKVGAVLDLVGLAQYARRRPAQLSGGQQQRVALARTIVIEPRLLLLD EPLSNLDKQLRVQMREELKNLQRKLGLTTVFVTHDQEEAMTTADRMAVLDKGILQQVG TAAGLYDYPHNRFVAGFVGTANLLEGEVTAVSADTLTFHARGLGPLALARPAEPPAIG PAALAFRPHQVSMRPRGEPGDGARVWLDGLVESAEFLGEFSRYRVRVGEVALTSDQPH YAGRGMFAPGAQVRLGLDPAQLRYLDR" misc_feature 1565979..1567061 /locus_tag="Alide_1491" /note="ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842" /db_xref="CDD:33633" misc_feature 1565994..1566689 /locus_tag="Alide_1491" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1566090..1566113 /locus_tag="Alide_1491" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(1566099..1566104,1566108..1566116,1566228..1566230, 1566456..1566461,1566558..1566560) /locus_tag="Alide_1491" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 1566219..1566230 /locus_tag="Alide_1491" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 1566384..1566413 /locus_tag="Alide_1491" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 1566444..1566461 /locus_tag="Alide_1491" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 1566468..1566479 /locus_tag="Alide_1491" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 1566546..1566566 /locus_tag="Alide_1491" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature 1566816..1567055 /locus_tag="Alide_1491" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene 1567134..1568195 /locus_tag="Alide_1492" /db_xref="GeneID:10103531" CDS 1567134..1568195 /locus_tag="Alide_1492" /inference="protein motif:PFAM:PF00248" /note="PFAM: aldo/keto reductase; KEGG: ajs:Ajs_2755 aldo/keto reductase" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="YP_004126139.1" /db_xref="GI:319762202" /db_xref="GO:0016491" /db_xref="InterPro:IPR001395" /db_xref="GeneID:10103531" /translation="MNTLPLGRSDLRVTPICLGTMTFGEQVNEPDAHAILDRAVERGV NFIDTAEMYAVPAREATCGATESIIGRWLGKRPGMRGRIVLATKVAGPSRGMPWIREG RGMTAADIVASCEGSLRRLQTDVIDLYQIHWPERHVPAFGNLYYDPAKEVSATPIQEQ LEALAGLVRAGKVRHVGLSNETPYGVHEFVRLAEQHGLPRVASVQNPYCLLNRSWENA MDESCHRLGVSLLAYSPLGFGLLTGKFDRHAPTDPGAPQDARIARYESVRKQRWGRPE ALAGARRYNQLAREHGLTPTQLALAFCYRSWRVASTIIGVTTLAQLDENLDAWGTQLS PELLAAIDAMRWELRDPAQ" misc_feature 1567134..1568186 /locus_tag="Alide_1492" /note="Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]; Region: Tas; COG0667" /db_xref="CDD:31011" misc_feature 1567140..1568162 /locus_tag="Alide_1492" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature order(1567188..1567196,1567275..1567277,1567290..1567292, 1567395..1567397,1567527..1567532,1567668..1567673, 1567746..1567748,1567830..1567847,1568019..1568021, 1568070..1568081,1568094..1568096,1568103..1568108) /locus_tag="Alide_1492" /note="active site" /db_xref="CDD:119408" misc_feature order(1567275..1567277,1567290..1567292,1567395..1567397, 1567527..1567529) /locus_tag="Alide_1492" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene 1568259..1568759 /locus_tag="Alide_1493" /db_xref="GeneID:10103532" CDS 1568259..1568759 /locus_tag="Alide_1493" /inference="protein motif:TFAM:TIGR00011" /note="KEGG: ajs:Ajs_2754 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region" /codon_start=1 /transl_table=11 /product="ybak/ebsc protein" /protein_id="YP_004126140.1" /db_xref="GI:319762203" /db_xref="InterPro:IPR004369" /db_xref="InterPro:IPR007214" /db_xref="GeneID:10103532" /translation="MAKKDKTVHVSETPATQMLRAHGVEFTEHPYDYVEHGGSAESAR QLGLDEHMVVKTLVMQDQDARPLIVLMHGDRKVSTKNLARQIGAKSVEPCRPEVANRH SGYLVGGTSPFGTRREMPVFIEESILQLPRIAINGGRRGFLVQLDPQVCVQLLGARPV RCALAE" misc_feature 1568295..1568738 /locus_tag="Alide_1493" /note="This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS); Region: YbaK_deacylase; cd00002" /db_xref="CDD:88582" misc_feature order(1568421..1568423,1568580..1568585,1568664..1568666) /locus_tag="Alide_1493" /note="putative deacylase active site [active]" /db_xref="CDD:88582" gene 1568791..1569423 /locus_tag="Alide_1494" /db_xref="GeneID:10103533" CDS 1568791..1569423 /locus_tag="Alide_1494" /inference="protein motif:PFAM:PF02660" /note="PFAM: protein of unknown function DUF205; KEGG: dia:Dtpsy_2243 protein of unknown function DUF205" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126141.1" /db_xref="GI:319762204" /db_xref="InterPro:IPR003811" /db_xref="InterPro:IPR020788" /db_xref="GeneID:10103533" /translation="MSSVLLSLAATVAAYLLGSLSFAVIVSRVMGLSDPRTYGSKNPG ATNVLRSGSKAAAAVTLLFDAAKGWLPVALVRWFGAPYGLEEGTMALVGLAAFLGHLW PVFFRFQGGKGVATALGVLLGISGWLGLATLLTWAIIAFFFRYSSLASLVAAVFAPFF YVLGGGVAWYMDARVGVAIAVMAGLLAWRHKANIQRLIQGKESRLGSKKT" sig_peptide 1568791..1568862 /locus_tag="Alide_1494" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.964 at residue 24" misc_feature 1568842..1569417 /locus_tag="Alide_1494" /note="Domain of unknown function (DUF205); Region: DUF205; cl00410" /db_xref="CDD:193806" gene complement(1569426..1570424) /locus_tag="Alide_1495" /db_xref="GeneID:10103534" CDS complement(1569426..1570424) /locus_tag="Alide_1495" /inference="similar to AA sequence:KEGG:Dtpsy_2242" /note="KEGG: dia:Dtpsy_2242 metal dependent phosphohydrolase" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_004126142.1" /db_xref="GI:319762205" /db_xref="GeneID:10103534" /translation="MAPSAQASPPEAADSEYEDLLGQWSDLESALSVLLARPRSVQNF PSKLRQCDLWLQDLVAHDIDAALYLMLQLAATSTVGYSASHALVCATLCHILAPEFRL PAHERNSLVRAAFTMNIGMTALQDTLALQREELTPEQQQAVARHPQAGVELLEALRIT DDLWLEVVARHHAPQPEASQLADLHAPERLARILSTIDRYAAMISPRKSRTGRSATDS VRAIVGHDRELRDEVGLTLVRTVGLCPPGTFVRLDNAETAIVLRRSERANFPLVASVV DARGEPHSSPTLYHTVRGQPRIQSALARSAVTVQLPHRVMVRLGLYAAHRTNTITG" misc_feature complement(1569759..1570178) /locus_tag="Alide_1495" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature complement(order(1569831..1569833,1570071..1570076, 1570170..1570172)) /locus_tag="Alide_1495" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature complement(1570071..1570073) /locus_tag="Alide_1495" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene complement(1570454..1571101) /locus_tag="Alide_1496" /db_xref="GeneID:10103535" CDS complement(1570454..1571101) /locus_tag="Alide_1496" /inference="similar to AA sequence:KEGG:Ajs_2751" /note="KEGG: ajs:Ajs_2751 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126143.1" /db_xref="GI:319762206" /db_xref="InterPro:IPR011969" /db_xref="GeneID:10103535" /translation="MKRALLPCLSAVLALAASMPAHAQNVALAGILGGKALLVVDGSA PRGVAPGESHRGVRVVSVGRDEAVVDSAGGLRTVRLGEAPVSVGGSGAGQRVVLKADA RGHFVSSGMINGRVMQYMVDTGASTVAIGRPDAQRMGLKFEEEGQSVMMNTANGVAQG WRLRLDSVRVGDVELRGVDAIVTPQPMPYVLLGNSFLREFQMSRNGDEMVLHKRR" sig_peptide complement(1571030..1571101) /locus_tag="Alide_1496" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 24" misc_feature complement(1570508..1570792) /locus_tag="Alide_1496" /note="Bacterial aspartate proteases, retropepsin-like protease family; Region: retropepsin_like_bacteria; cd05483" /db_xref="CDD:133150" misc_feature complement(1570730..1570738) /locus_tag="Alide_1496" /note="catalytic motif [active]" /db_xref="CDD:133150" misc_feature complement(1570736..1570738) /locus_tag="Alide_1496" /note="Catalytic residue [active]" /db_xref="CDD:133150" gene complement(1571112..1571597) /locus_tag="Alide_1497" /db_xref="GeneID:10103536" CDS complement(1571112..1571597) /locus_tag="Alide_1497" /inference="protein motif:PFAM:PF04461" /note="PFAM: protein of unknown function DUF520; KEGG: ajs:Ajs_2750 nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126144.1" /db_xref="GI:319762207" /db_xref="InterPro:IPR007551" /db_xref="GeneID:10103536" /translation="MPSFDTVCEANFVEVRNAVENTAKEIGTRFDFKGTSAAIELKDK EITLFGDAEFQLQQVEDILRGKLTKRGVDVRFLDAGKPQKIGGDKLKQVVKVRSGIDS EQAKKIQRLVKDSKLKLQAAIQEEKVRVTGAKRDDLQAAMALIRKDMADLPLSFDNFR D" misc_feature complement(1571115..1571597) /locus_tag="Alide_1497" /note="Protein of unknown function (DUF520); Region: DUF520; cl00723" /db_xref="CDD:186162" gene 1571662..1572750 /locus_tag="Alide_1498" /db_xref="GeneID:10103537" CDS 1571662..1572750 /locus_tag="Alide_1498" /EC_number="1.1.1.158" /inference="protein motif:TFAM:TIGR00179" /note="TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dia:Dtpsy_2239 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein" /codon_start=1 /transl_table=11 /product="udp-n-acetylenolpyruvoylglucosamine reductase" /protein_id="YP_004126145.1" /db_xref="GI:319762208" /db_xref="GO:0008762" /db_xref="InterPro:IPR003170" /db_xref="InterPro:IPR006094" /db_xref="InterPro:IPR011601" /db_xref="InterPro:IPR016166" /db_xref="GeneID:10103537" /translation="MLVEKNVPLQSCNTFGIAARAHTLVRVRTPQDVYDLLADHRLAR QPMFVLGGGSNIVLTGDVKPVVLKMEIMGLRLLEETAQAWVVEAGAGENWHDTVDWTL SQGWPGLENLALIPGTVGAAPVQNIGAYGVELQDRFHSLVAIDLATGRPFTLDAAQCA FGYRDSVFKHSAPLAEHEGGGLPGHWGRGMGLAGRAVITHVRFLLPKAWRPELGYLDL ERRRAEAGVARPTARQIFDWVCEIRRAKLPDPAVIGNAGSFFKNPTVTPEQCQDIIAR DPKIVHYPMADGSIKLAAGWLIDACGWKGKTVGKAGVYDRQALVLVNRGTREDSVTGG EVMTLAKAIQTSVYERFGIRLEPEPVVV" misc_feature 1571662..1572747 /locus_tag="Alide_1498" /note="UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: murB; PRK00046" /db_xref="CDD:178820" misc_feature 1571731..1572126 /locus_tag="Alide_1498" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" misc_feature 1572361..1572741 /locus_tag="Alide_1498" /note="UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873" /db_xref="CDD:111727" gene complement(1572858..1573232) /locus_tag="Alide_1499" /db_xref="GeneID:10103538" CDS complement(1572858..1573232) /locus_tag="Alide_1499" /inference="similar to AA sequence:KEGG:Daci_4779" /note="KEGG: dac:Daci_4779 SPW repeat-containing protein" /codon_start=1 /transl_table=11 /product="spw repeat-containing protein" /protein_id="YP_004126146.1" /db_xref="GI:319762209" /db_xref="GeneID:10103538" /translation="MRNMKSMKHWQDPLNALLGVWLALSPWVMGFESQMVPTASSVVA GLALIAVSLGAVFVPRAWEEWTQAALGVWMIASPWVLGFSGQMDVMRVAVASGIVVLA LALWVLATDKDYSTWMHHGAAH" sig_peptide complement(1573140..1573232) /locus_tag="Alide_1499" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.636) with cleavage site probability 0.428 at residue 31" misc_feature complement(1573071..1573193) /locus_tag="Alide_1499" /note="SPW repeat; Region: SPW; pfam03779" /db_xref="CDD:146425" misc_feature complement(<1572939..1573046) /locus_tag="Alide_1499" /note="SPW repeat; Region: SPW; pfam03779" /db_xref="CDD:146425" gene 1573396..1574067 /locus_tag="Alide_1500" /db_xref="GeneID:10103539" CDS 1573396..1574067 /locus_tag="Alide_1500" /inference="protein motif:TFAM:TIGR00697" /note="KEGG: dia:Dtpsy_2235 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126147.1" /db_xref="GI:319762210" /db_xref="InterPro:IPR003744" /db_xref="GeneID:10103539" /translation="MTLVQAPHSRVPFYLSLLVAFHIAIVIASNYLVQLPITLLGFHS TWGAFSFPFIFLATDLTVRLIGKASARRVILRAMLPALLASYVVGVLFHEGRFNGAGA LGDFNTFVFRIAFASFAAYVLGQLLDIQVFDRIRQKSSAWWLAPAAASVFGQALDTAA FFAIAFWRSSNAFMAAHWVEIAWVDYAIKLGVSLLLFVPAYGVLLAAVVRWLRQDPLP LAAAR" misc_feature 1573417..1574031 /locus_tag="Alide_1500" /note="Uncharacterized ACR, YhhQ family COG1738; Region: DUF165; cl00756" /db_xref="CDD:193931" gene 1574064..1574783 /locus_tag="Alide_1501" /db_xref="GeneID:10103540" CDS 1574064..1574783 /locus_tag="Alide_1501" /inference="protein motif:TFAM:TIGR00364" /note="KEGG: dia:Dtpsy_2234 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like" /codon_start=1 /transl_table=11 /product="exsb protein" /protein_id="YP_004126148.1" /db_xref="GI:319762211" /db_xref="GO:0008762" /db_xref="InterPro:IPR004479" /db_xref="InterPro:IPR018317" /db_xref="GeneID:10103540" /translation="MSAPDRRRALVLLSGGQDSATCLAWALARYAHVETIGFDYGQRH RAELDCRQRLRAGLQAMPWSGRLGPDHLLTVDVLAQLGGSAMTEEVAIAMQQDGLPNT FVPGRNLLFFTLAAALAYRRGLQVLVGGMSETDYSGYPDCRDNTLKALQVALSLGLDR PLTLETPLMWIDKAGTWALAHQLGGDALVELIRRDSHTCYLGQRDRLHDWGYGCGRCP ACELRAQGWAQWAEKNRPACE" misc_feature 1574085..1574750 /locus_tag="Alide_1501" /note="ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In...; Region: ExsB; cd01995" /db_xref="CDD:73293" misc_feature order(1574097..1574105,1574109..1574120,1574184..1574186, 1574190..1574192) /locus_tag="Alide_1501" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:73293" gene 1575163..1577307 /locus_tag="Alide_1502" /db_xref="GeneID:10103541" CDS 1575163..1577307 /locus_tag="Alide_1502" /inference="protein motif:PFAM:PF01968" /note="PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_C6172 acetone carboxylase, beta subunit" /codon_start=1 /transl_table=11 /product="hydantoinase/oxoprolinase" /protein_id="YP_004126149.1" /db_xref="GI:319762212" /db_xref="GO:0016787" /db_xref="InterPro:IPR002821" /db_xref="InterPro:IPR008040" /db_xref="GeneID:10103541" /translation="MQVQSRVQVLGIDAGGTMTDTFFVRDDGRFVVGKAQSNPGDESL AIYQSSQDALAHWKRTVEDVYPELVTGVYSGTAMLNRVLSRKGLDVGLICNKGFEQTH SMGRALQSYLGYALEDRIHLNTHRYDEPLVPVSRTRGVTERTDVQGKVVIPLREDEVR QATRELVDAGSQAIVICLLQSHKNESSEQRARDIVREELRRLKSDIPVFASVDYYPSR KESHRMNTTILEAYGAEPSRQTLKKVSDRFKKHGAKFDLRVMATHGGTISWKAKELAR TIVSGPIGGVIGSKLLGEALGDENIACSDIGGTSFDVALITKGNFAIKSDPDMARLVL SLPLVAMDSVGSGAGSFVRLDPYSKSIKLGPDSAGYRVGTCWPESGLDTVSVSDCHVV LGYLNPDNFLGGAIKLDVERARQHIKAQIADPLGLSVEDAAAGVIELLDLTLSEYLRA NISAKGYNPADFTCFSYGGAGPVHTYGYTEGVGFKDVVVPAWAAGFSAFGCACADFEY RYDKSVDVGVAQHAPDADKEAACQALQQAWSELAVKVIDEFVLNGYKPEDVLLIPGYK MQYMGQLNDLEIVSPVTSAATAADWDRIVEAYEATYSRVYARSARSPELGFSITGAIL RGTVVTQKPVLPEDPDAGSTPPKEAYLGTRPFYRKKHWVDAALWRMEGLKSGNHIVGP AIIESDATTFVVPEGFETTIDKHRLFHLKEIK" misc_feature 1575187..1577301 /locus_tag="Alide_1502" /note="N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: HyuA; COG0145" /db_xref="CDD:30494" misc_feature 1575190..1575759 /locus_tag="Alide_1502" /note="Hydantoinase/oxoprolinase N-terminal region; Region: Hydant_A_N; pfam05378" /db_xref="CDD:147519" misc_feature 1575829..1576632 /locus_tag="Alide_1502" /note="Hydantoinase/oxoprolinase; Region: Hydantoinase_A; cl00668" /db_xref="CDD:163895" gene 1577319..1579643 /locus_tag="Alide_1503" /db_xref="GeneID:10103542" CDS 1577319..1579643 /locus_tag="Alide_1503" /inference="protein motif:PFAM:PF02538" /note="PFAM: Hydantoinase B/oxoprolinase; KEGG: tmz:Tmz1t_3470 hydantoinase B/oxoprolinase" /codon_start=1 /transl_table=11 /product="hydantoinase b/oxoprolinase" /protein_id="YP_004126150.1" /db_xref="GI:319762213" /db_xref="GO:0003824" /db_xref="InterPro:IPR003692" /db_xref="GeneID:10103542" /translation="MNMMSSKEVGFADLLKNGQTLKQFRDGIVERTQATGHYNGLDRL EFRDTDPIGYEKLFSKLRGGLVHARETAKKIAASPIVEQEGELCFTLYNAVGDCVLTS TGIIIHVGTMGAAIKYMIENNWEANPGINPGDMFTNNDCSIGNVHPCDIATIVPIFWE GRLIGWVGGVTHVIDTGSVTPGSMSTGQTQRFGDGYMITCRKTGVNDVPLRDWLHESQ RSVRTPKYWILDEKTRIAGCHMIRELVEDVIRADGIEAYEKFAYEVIEEGRRGLQSRI KAMTMPGKYRKVSFVDVPYKHEDVQVSNAFAKLDSIMHSPCEMTIKADGKWRLDFEGA SRWGWHTFNAHQVAFTSGIWVMMCQTLVPTQRINDGAYYATEFRLPKGTWCNPDDRRT GHAYAWHFLVSGWAALWRGLGQSYFSRGYLEEVNAGNANTSNWLQGGGINQDGEIHAV NSFEASSCGTGACAVKDGLNHAAAIWNPEGDMGDVEIWEMAEPLLYLGRNVKANSGGY GKYRGGCGFETLRMVWNAQDWTMFFMGNGYMNSDWGLMGGYPAAAGYRFEAHATGLER RIANGESVPLGGDIDPSAPIYEHHIDATAQVKRDKQCMTTEDCYDNHDLYLNYLRGGP GFGDPIDRDPKAIETDLNQKFLLPEYAQKVYGAVFTQDAKGAYTVDAAKTRARRAEMR KERLARALPTREWMKEERERILNKDASTQVQHMFATSFSLSEKFTKQFKDFWSLPDDW ELREEDLGVPTYGSKYRMDLSLLPDVTTVVQVEE" misc_feature 1577466..1579238 /locus_tag="Alide_1503" /note="Hydantoinase B/oxoprolinase; Region: Hydantoinase_B; pfam02538" /db_xref="CDD:111439" gene 1579668..1580174 /locus_tag="Alide_1504" /db_xref="GeneID:10103543" CDS 1579668..1580174 /locus_tag="Alide_1504" /inference="protein motif:PFAM:PF08882" /note="PFAM: Acetone carboxylase gamma subunit; KEGG: eba:ebA4702 acetone carboxylase gamma subunit" /codon_start=1 /transl_table=11 /product="acetone carboxylase gamma subunit" /protein_id="YP_004126151.1" /db_xref="GI:319762214" /db_xref="InterPro:IPR014979" /db_xref="InterPro:IPR016750" /db_xref="GeneID:10103543" /translation="MSTYTNEQVARLVDGSLDWETTFRMLSMPKDGSRFEQYLAALQA QVKFPDRIVLPLGPHLYIVQSAKTKQWVTQCDCGHVFGDYRENWKMHAHVYVRDTEAA MTEVYPKLMAPDTKWQVYREYYCPSCGTMHDVEAPTPWYPVIHDFEPDIETFYKEWVH MPLPERAG" misc_feature 1579668..1580165 /locus_tag="Alide_1504" /note="Acetone carboxylase gamma subunit; Region: Acetone_carb_G; cl01902" /db_xref="CDD:154649" gene 1580360..1582342 /locus_tag="Alide_1505" /db_xref="GeneID:10103544" CDS 1580360..1582342 /locus_tag="Alide_1505" /inference="protein motif:PFAM:PF00158" /note="KEGG: tmz:Tmz1t_3466 GAF modulated sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="sigma-54 factor interaction domain-containing protein" /protein_id="YP_004126152.1" /db_xref="GI:319762215" /db_xref="GO:0003700" /db_xref="GO:0005524" /db_xref="GO:0008134" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR020441" /db_xref="GeneID:10103544" /translation="MAPERKDFFSNPQDEYDVMNAWHSFLGGGERPVDTLRALVDASW QRSLEARVDPRMRSGPRPLAEGELYLLRERQRELLEASAPVMAHARDFLTETGTLMAL ADTRCTILNTEGDLPAIDSAETIHLMPGATWSEGACGTNAIGTALAVGKPVQIHSAEH FCEGIKRWTCSATVMRHPLDGEVVGVLDVSGLSQTYNRQTLALVVTAASRIEARLAAA EMERRYRLLDRAMGRLSGGDGVVLFDRRGNVVRANEHAALAIRSADGEMELAQGLRRV PGFAVGQQGQLAAGLLPSWVKPEWIEPLIVDGKPLGTLLVVPRSPASGWRADAGGAAV GAVPCSGMAADSFAAIVTMDAGMNATIAKARQLARTRMPVLLQGETGVGKEEFARGIH GNRGGPFVALNCGGLSRELLASELFGYADGAFTGARKGGMVGKIEAADGGTLFLDEIG EMSLDMQPNLLRVLEQGEIYRLGENTPRRVNFRLVAATHRDLRQDIAAGRFRMDLFYR IAVTNLRIPALRERQGDVEVLAQHFLERFRRAQGQGPERITPDALRVLRSYPWPGNVR ELRNLVEGLVLLCEEPSVTCAHLPHEFQAVHDAAQPGSCNPSGAMSMAEGEEDLIRRA IRASEGNLTLTARKLQIAKSTLYAKMHRYGLSRDDK" misc_feature 1580408..1582330 /locus_tag="Alide_1505" /note="Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]; Region: AcoR; COG3284" /db_xref="CDD:33094" misc_feature 1581422..1581886 /locus_tag="Alide_1505" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1581491..1581514 /locus_tag="Alide_1505" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1581494..1581517,1581698..1581700,1581824..1581826) /locus_tag="Alide_1505" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1581686..1581703 /locus_tag="Alide_1505" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1581881..1581883 /locus_tag="Alide_1505" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1582193..1582318 /locus_tag="Alide_1505" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(1582445..1583788) /locus_tag="Alide_1506" /db_xref="GeneID:10103545" CDS complement(1582445..1583788) /locus_tag="Alide_1506" /EC_number="6.3.4.5" /inference="protein motif:TFAM:TIGR00032" /note="TIGRFAM: argininosuccinate synthase; KEGG: dia:Dtpsy_2233 argininosuccinate synthase; PFAM: argininosuccinate synthase" /codon_start=1 /transl_table=11 /product="argininosuccinate synthase" /protein_id="YP_004126153.1" /db_xref="GI:319762216" /db_xref="GO:0004055" /db_xref="GO:0005524" /db_xref="InterPro:IPR001518" /db_xref="InterPro:IPR018223" /db_xref="GeneID:10103545" /translation="MATILQSLPVGQKVGIAFSGGLDTSAALRWMKNKGAIPYAYTAN LGQPDEDDYDAIPRKAMEYGAEAARLVDCRTQLAHEGIAAIQAGAFHISTGGIAYFNT TPLGRAVTGTMLVAAMKEDDVHIWGDGSTFKGNDIERFYRYGLLTNPSLRIYKPWLDQ QFIDELGGRAEMSAFMTKEGFGYKMSAEKAYSTDSNMLGATHEAKDLEYLSSGIRIVN PIMGVAFWKPEVEVPAEEVSVTFDEGQPVALNGKEIADPVELFLEANRIGGRHGLGMS DQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRLNGLKLGRLLYQG RWFDPQAIMLRETAQRWVARAVTGTVTLELRRGNDYSILNTESPNLTYAPERLSMEKV EDAPFSPLDRIGQLTMRNLDISDTRGKLGVYARAGLLSLGGNAALAQLEDGSTKK" misc_feature complement(1582526..1583752) /locus_tag="Alide_1506" /note="argininosuccinate synthase; Region: argG; TIGR00032" /db_xref="CDD:129143" misc_feature complement(1582553..1583749) /locus_tag="Alide_1506" /note="Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide; Region: AANH_like; cl00292" /db_xref="CDD:193753" misc_feature complement(order(1583660..1583662,1583666..1583668, 1583717..1583728,1583735..1583740)) /locus_tag="Alide_1506" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:73291" gene complement(1583816..1584133) /locus_tag="Alide_1507" /db_xref="GeneID:10103546" CDS complement(1583816..1584133) /locus_tag="Alide_1507" /inference="protein motif:PFAM:PF06865" /note="PFAM: protein of unknown function DUF1255; KEGG: dia:Dtpsy_2232 protein of unknown function DUF1255" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126154.1" /db_xref="GI:319762217" /db_xref="InterPro:IPR009664" /db_xref="GeneID:10103546" /translation="MTTEKIAGVSVATRANVYFDGKCVSHGITYPDGTQKSVGVVLPA TLTFGTGAPEIMECVAGSCEYRLAGSDAWLAAGPGDKFSIPANSSFDIRVAEAFHYIC HYG" misc_feature complement(1583819..1584100) /locus_tag="Alide_1507" /note="Protein of unknown function (DUF1255); Region: DUF1255; cl01202" /db_xref="CDD:186381" gene complement(1584194..1584865) /locus_tag="Alide_1508" /db_xref="GeneID:10103547" CDS complement(1584194..1584865) /locus_tag="Alide_1508" /inference="similar to AA sequence:KEGG:Dtpsy_2231" /note="KEGG: dia:Dtpsy_2231 17 kDa surface antigen" /codon_start=1 /transl_table=11 /product="17 kda surface antigen" /protein_id="YP_004126155.1" /db_xref="GI:319762218" /db_xref="GeneID:10103547" /translation="MNKTIILTALATAALAAQAQEQGRVFSATPVTQQVAVPRQVCGN ETIYGGARPTTGAGAVLGAIAGGAAGNAIGGGSGRAAATALGVIGGAVLGNQVESGRP GYQNVQRCTTETYYDNRVVGYDVVYEYAGRRYTTRTQSDPGQWIPLSVQPAVPGVPGY PPDYPSDHPSGYAPGYGGYAQPGVVVSTPPGPPAYVVEPPPTVIEYRAPYGYPHRPPH YYGRY" sig_peptide complement(1584806..1584865) /locus_tag="Alide_1508" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 20" misc_feature complement(1584422..1584805) /locus_tag="Alide_1508" /note="Glycine zipper 2TM domain; Region: Rick_17kDa_Anti; cl10470" /db_xref="CDD:195970" gene complement(1584986..1585372) /locus_tag="Alide_1509" /db_xref="GeneID:10103548" CDS complement(1584986..1585372) /locus_tag="Alide_1509" /inference="protein motif:PFAM:PF03960" /note="PFAM: arsenate reductase and related; KEGG: dia:Dtpsy_2230 arsenate reductase and related" /codon_start=1 /transl_table=11 /product="arsenate reductase-like protein" /protein_id="YP_004126156.1" /db_xref="GI:319762219" /db_xref="InterPro:IPR006504" /db_xref="InterPro:IPR006660" /db_xref="GeneID:10103548" /translation="MSTPTIIVYGIPNCDTVKKARAWLQEQGLPYRFHDFKKQGVPAE RLPAWMAAVGWDRLLNRQGTTWRKLDPTVQGRVHDAASAAALMAEQPSVIKRPVVEWS GTSTDRVTVGFQADQWNELAGGGSNA" misc_feature complement(1585028..1585357) /locus_tag="Alide_1509" /note="Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine...; Region: ArsC_Yffb; cd03035" /db_xref="CDD:48584" misc_feature complement(order(1585034..1585036,1585085..1585087, 1585193..1585195,1585331..1585333)) /locus_tag="Alide_1509" /note="putative catalytic residues [active]" /db_xref="CDD:48584" gene 1585391..1586743 /locus_tag="Alide_1510" /db_xref="GeneID:10103549" CDS 1585391..1586743 /locus_tag="Alide_1510" /EC_number="6.3.2.12" /inference="protein motif:TFAM:TIGR01499" /note="TIGRFAM: FolC bifunctional protein; KEGG: ajs:Ajs_2739 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein" /codon_start=1 /transl_table=11 /product="folc bifunctional protein" /protein_id="YP_004126157.1" /db_xref="GI:319762220" /db_xref="GO:0004326" /db_xref="GO:0005524" /db_xref="InterPro:IPR001645" /db_xref="InterPro:IPR004101" /db_xref="InterPro:IPR013221" /db_xref="InterPro:IPR018109" /db_xref="GeneID:10103549" /translation="MRGSATIRPAMHTIPPTLESWLAHCERLHAKNIDMGLARVGEVA RRLALRFDCPVITVAGTNGKGSTCAMIEAVAMQAGYRTGVYGSPHLVRFEERCRIRGE TVDAASLVPHFEAVERARTQGDEVSLTYFEFTTLAILRLMSMSLLDVAILEVGLGGRL DATNVIDADCAVITSVDIDHVEFLGPDREAIGREKAGIMRTGRPVVVSDPVPPQSVID HAREIGADLWRFGHDFNYSGDKQQWAWAGRSRRYAGLAYPALRGANQLINAAGALAAL EALRARLPITAQAVRLGLARVELPGRFQIVPGQPTLVLDVAHNPHAVAALTANLDAMG YFPTTHAVFGAMADKDLAPMLAKVGPIIDRWYFTDLPTPRAESAAALQQKWNALQMVA GGRRPVSTSLHTSPEEALRAAVEAADPADRIVVFGSFYTVGGVLKDGVPRLQAKHLSA " misc_feature 1585442..1586698 /locus_tag="Alide_1510" /note="bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional; Region: PRK10846" /db_xref="CDD:182774" misc_feature 1585562..>1586089 /locus_tag="Alide_1510" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" misc_feature 1586288..1586530 /locus_tag="Alide_1510" /note="Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875" /db_xref="CDD:190458" gene 1586753..1587589 /locus_tag="Alide_1511" /db_xref="GeneID:10103550" CDS 1586753..1587589 /locus_tag="Alide_1511" /inference="protein motif:PFAM:PF05036" /note="PFAM: Sporulation domain-containing protein; KEGG: dia:Dtpsy_2228 sporulation domain protein" /codon_start=1 /transl_table=11 /product="sporulation domain-containing protein" /protein_id="YP_004126158.1" /db_xref="GI:319762221" /db_xref="InterPro:IPR007730" /db_xref="GeneID:10103550" /translation="MAFFKFRWPGRQEPQGDSSKPARRSRGTAQAESIEDMRRRARHR LIGAVVLVLAGVVGFPMLFDTQPRPVAVNMAIDIPDRNKVAPLVVPHKGGEAAAPAAE PPAAGLDAGEEVVASRPRGEPAPGQRAQAEPRHEPAPEQRTEPKPAPKVEHKAEPKPE PKPEPKTEPKTEPKTARQEDAARARALLEGRAQPPAAAAAGEQGRFIVQVGAFADSDK AREVRERLERSGLKTYTQVVDTKDGKRTRVRLGPFDSRAEADKAAGRVKGAGLSASVL SL" misc_feature 1587368..1587580 /locus_tag="Alide_1511" /note="Sporulation related domain; Region: SPOR; cl10051" /db_xref="CDD:186898" gene 1587603..1588091 /locus_tag="Alide_1512" /db_xref="GeneID:10103551" CDS 1587603..1588091 /locus_tag="Alide_1512" /inference="protein motif:PFAM:PF02674" /note="PFAM: Colicin V production protein; Protein of unknown function DUF2474; KEGG: dia:Dtpsy_2227 colicin V production protein" /codon_start=1 /transl_table=11 /product="colicin v production protein" /protein_id="YP_004126159.1" /db_xref="GI:319762222" /db_xref="InterPro:IPR003825" /db_xref="InterPro:IPR018895" /db_xref="GeneID:10103551" /translation="MAALDWIFLAVLAASLLLGAWRGLVFELLSLAGWVVAFFAAQWF AGDVGAWLPMGQSDAAWRHVAGFALVFVGSVFACGLVAWLLKKLVEAVGLRPADRALG ALFGVLRGLVLLLAVVLVAGWLQVQEAPWWKESQAAPMLQGALKGLRPVLPDELGRHL PS" misc_feature 1587612..>1587899 /locus_tag="Alide_1512" /note="Colicin V production protein; Region: Colicin_V; cl00567" /db_xref="CDD:193873" gene 1588155..1589663 /locus_tag="Alide_1513" /db_xref="GeneID:10103552" CDS 1588155..1589663 /locus_tag="Alide_1513" /inference="protein motif:TFAM:TIGR01134" /note="KEGG: dia:Dtpsy_2226 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase" /protein_id="YP_004126160.1" /db_xref="GI:319762223" /db_xref="GO:0004044" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR005854" /db_xref="InterPro:IPR017932" /db_xref="GeneID:10103552" /translation="MCGIVGVVSTAPVNQLIYDALLLLQHRGQDAAGIVTQQGRKFFM HKAKGMVRDVFRTRNMRALPGVVGLGQVRYPTAGNASSEEEAQPFYVNAPFGIVMVHN GNLTNAKQLRRELAETDHRHTNTESDSEVLLNVLAHELARASSGSPLKDEDVFAAVRA VHRRIKGSYAVIALIAGYGLLAFRDPFGIRPLCMGKGADGTVMLASESVALEGTLHQL ERDVAPGEAVFVRLDGRVLTQQCAENPHLNPCVFEYVYLARPDSVLDGISVYQARLNM GETLAKRVISTVPPSEIDAIIPIPESSRPSAMQLAQLLGIPYREGFVKNRYVGRTFIM PGQGTRKKSVRQKLNAIASEFKGRRVLLVDDSIVRGTTSKEIVQMARDAGAVKVYLAS AAPPVRHPNVYGIDMPTRTELVAHNRTVEEIRQVIGADALIYQDVDAMKQAVGKINPR VEGFEASCFDGLYITGDISDEDVTALNEGRERGGDEEPEDTSRLSLPNAEAL" misc_feature 1588155..1589654 /locus_tag="Alide_1513" /note="amidophosphoribosyltransferase; Provisional; Region: PRK09246" /db_xref="CDD:181724" misc_feature 1588158..1588949 /locus_tag="Alide_1513" /note="Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the...; Region: GPATase_N; cd00715" /db_xref="CDD:48479" misc_feature order(1588158..1588160,1588233..1588238,1588371..1588373, 1588458..1588463,1588536..1588538) /locus_tag="Alide_1513" /note="active site" /db_xref="CDD:48479" misc_feature order(1588206..1588211,1588218..1588220,1588239..1588241, 1588425..1588427,1588542..1588544,1588551..1588556, 1588563..1588568) /locus_tag="Alide_1513" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:48479" misc_feature 1588962..1589327 /locus_tag="Alide_1513" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 1589792..1591006 /locus_tag="Alide_1514" /db_xref="GeneID:10103553" CDS 1589792..1591006 /locus_tag="Alide_1514" /EC_number="2.5.1.48" /inference="protein motif:TFAM:TIGR01325" /note="TIGRFAM: O-succinylhomoserine sulfhydrylase; KEGG: dac:Daci_4768 O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein" /codon_start=1 /transl_table=11 /product="o-succinylhomoserine sulfhydrylase" /protein_id="YP_004126161.1" /db_xref="GI:319762224" /db_xref="InterPro:IPR000277" /db_xref="InterPro:IPR006234" /db_xref="GeneID:10103553" /translation="MTDKTLPAGLHPDTLAVREAVERSQWGEHSEALYLTSSFVQSDC ASAARRFANEEAGYTYSRTSNPTVTSFERRLAAMEGTECAVATATGMSAILLVALTAL KAGDHVICSQSMFGSTIKLLGTEMARFGVETSFVSQTDVQAWKAAMRPNTRLLFAETP TNPLTDLCDIAALAELAHAHGALLAVDNSFASPVLQQPVRFGADLVVHSGTKLLDGQG RVMAGAVCGTVALVDKVMGTFLRSGGLNLAPFNAWVVLKGLETLGLRVKAESAAALEL ATWLEAHPKVARVYYPGLKSHPQHELAMRQQNGMGGTVLAFDVAGQGAQQLRANAFHV VDSTRVCSITANLGDVKTTITHPASTSHGRLTEEQRQAAGIGQGLIRISVGLEHLGDL QNDLARGLDTLP" misc_feature 1589810..1590994 /locus_tag="Alide_1514" /note="O-succinylhomoserine sulfhydrylase; Validated; Region: PRK08133" /db_xref="CDD:181244" misc_feature 1589888..1590994 /locus_tag="Alide_1514" /note="CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614" /db_xref="CDD:99738" misc_feature order(1589894..1589905,1589909..1589914,1589969..1589971, 1589975..1589977,1590053..1590058,1590062..1590067, 1590134..1590136,1590149..1590151,1590158..1590160, 1590422..1590424,1590446..1590448,1590452..1590454, 1590503..1590505,1590533..1590535,1590539..1590544, 1590797..1590799) /locus_tag="Alide_1514" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99738" misc_feature order(1590056..1590064,1590134..1590136,1590263..1590265, 1590350..1590352,1590416..1590418,1590422..1590427, 1590452..1590454) /locus_tag="Alide_1514" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:99738" misc_feature order(1590056..1590064,1590134..1590136,1590350..1590352, 1590359..1590361,1590416..1590418,1590422..1590427) /locus_tag="Alide_1514" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature 1590425..1590427 /locus_tag="Alide_1514" /note="catalytic residue [active]" /db_xref="CDD:99738" gene 1591003..1592406 /locus_tag="Alide_1515" /db_xref="GeneID:10103554" CDS 1591003..1592406 /locus_tag="Alide_1515" /inference="protein motif:TFAM:TIGR00464" /note="KEGG: dia:Dtpsy_2224 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA synthetase" /protein_id="YP_004126162.1" /db_xref="GI:319762225" /db_xref="GO:0000166" /db_xref="GO:0004818" /db_xref="GO:0005524" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR004527" /db_xref="InterPro:IPR020058" /db_xref="InterPro:IPR020060" /db_xref="GeneID:10103554" /translation="MTSTKVRTRFAPSPTGFIHLGNIRSALYPWAFARANGGDFILRI EDTDLERSTQASVDVILEGMAWLQLDHDEGPYYQMQRMDRYKEVLAQLQAAGHVYPCY MSVQELDALRERQMAAKEKPRYDGTWRPEPGKVLPPVPEGVKPVLRFKTPKDGVVGWD DKCKGRIEFQNSELDDLVIARPDGTPTYNFCVCVDDMDMRVTHVIRGDDHVNNTPRQI HIFEALGAQVPVFAHLPTVLNEQGEKMSKRNGAKAVTQYRDEGYLPDAMVNYLARLGW SHGDDEIFSRAQFLAWFDLDHLGRSAGQFDEAKLRWVNAQHLKAMDDAQLADMVEPFA VKAGVAASQLDERLPRICALFKDRCETLVDLARWIAVFYADAVERNADDYARHVTEAA QPLLDAFAAALQTVEWNKEAIAAAIKDVLKAQGAKMPQLAMPVRVLTMGTAHTPSVDA VLELLGREKILARLKSR" misc_feature 1591006..1592397 /locus_tag="Alide_1515" /note="glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406" /db_xref="CDD:179296" misc_feature 1591015..>1591311 /locus_tag="Alide_1515" /note="catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808" /db_xref="CDD:173905" misc_feature order(1591027..1591029,1591033..1591041,1591063..1591068, 1591072..1591077,1591135..1591137,1591306..1591308) /locus_tag="Alide_1515" /note="active site" /db_xref="CDD:173905" misc_feature 1591057..1591068 /locus_tag="Alide_1515" /note="HIGH motif; other site" /db_xref="CDD:173905" misc_feature <1591537..1591959 /locus_tag="Alide_1515" /note="catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808" /db_xref="CDD:173905" misc_feature order(1591564..1591566,1591576..1591578,1591618..1591623, 1591627..1591632,1591705..1591710,1591732..1591737) /locus_tag="Alide_1515" /note="active site" /db_xref="CDD:173905" misc_feature 1591732..1591746 /locus_tag="Alide_1515" /note="KMSKS motif; other site" /db_xref="CDD:173905" gene 1592473..1592548 /locus_tag="Alide_R0017" /note="tRNA-Ala1" /db_xref="GeneID:10103555" tRNA 1592473..1592548 /locus_tag="Alide_R0017" /product="tRNA-Ala" /db_xref="GeneID:10103555" gene 1592569..1592644 /locus_tag="Alide_R0018" /note="tRNA-Glu1" /db_xref="GeneID:10103556" tRNA 1592569..1592644 /locus_tag="Alide_R0018" /product="tRNA-Glu" /db_xref="GeneID:10103556" gene 1592692..1592768 /locus_tag="Alide_R0019" /note="tRNA-Asp1" /db_xref="GeneID:10103557" tRNA 1592692..1592768 /locus_tag="Alide_R0019" /product="tRNA-Asp" /db_xref="GeneID:10103557" gene 1592775..1592850 /locus_tag="Alide_R0020" /note="tRNA-Ala2" /db_xref="GeneID:10103558" tRNA 1592775..1592850 /locus_tag="Alide_R0020" /product="tRNA-Ala" /db_xref="GeneID:10103558" gene 1592874..1592949 /locus_tag="Alide_R0021" /note="tRNA-Glu2" /db_xref="GeneID:10103559" tRNA 1592874..1592949 /locus_tag="Alide_R0021" /product="tRNA-Glu" /db_xref="GeneID:10103559" gene 1592997..1593073 /locus_tag="Alide_R0022" /note="tRNA-Asp2" /db_xref="GeneID:10103560" tRNA 1592997..1593073 /locus_tag="Alide_R0022" /product="tRNA-Asp" /db_xref="GeneID:10103560" gene complement(1593200..1593958) /locus_tag="Alide_1516" /db_xref="GeneID:10103561" CDS complement(1593200..1593958) /locus_tag="Alide_1516" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2108 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004126163.1" /db_xref="GI:319762226" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10103561" /translation="MDIKGKVFIVTGGASGLGEGTARMLADAGGQVVIADMQADKGEA VAREVKGAFVRCDVSSEADGQAVVAKAVSLGKLMGLVNCAGIAPAEKTVGKNGAHALA TFTKTITVNLVGTFNMIRLAAEAMSRNEPEPTGERGVLISTASVAAYDGQIGQAAYSA SKGGVVGMTLPIARDLARSGIRNMTIAPGIFGTPMLFGMPQEVQDALAAGVPFPSRLG TPQDYARLVRHIFENDMLNGEVIRLDGAIRLAPK" misc_feature complement(1593224..1593958) /locus_tag="Alide_1516" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557" /db_xref="CDD:180126" misc_feature complement(1593206..1593949) /locus_tag="Alide_1516" /note="17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs; Region: HSD10-like_SDR_c; cd05371" /db_xref="CDD:187629" misc_feature complement(order(1593371..1593382,1593386..1593397, 1593473..1593475,1593485..1593487,1593524..1593532, 1593629..1593631,1593704..1593712,1593785..1593793, 1593848..1593853,1593908..1593916,1593923..1593925)) /locus_tag="Alide_1516" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187629" misc_feature complement(order(1593206..1593217,1593221..1593268, 1593272..1593274,1593281..1593286,1593293..1593295, 1593305..1593313,1593317..1593325,1593386..1593388, 1593413..1593415,1593419..1593430,1593434..1593439, 1593443..1593451,1593455..1593460,1593467..1593472, 1593479..1593484,1593491..1593493,1593497..1593517, 1593551..1593559,1593578..1593580,1593587..1593592, 1593599..1593601,1593608..1593613,1593620..1593625, 1593635..1593637,1593644..1593649,1593656..1593658, 1593662..1593667,1593674..1593676,1593680..1593688)) /locus_tag="Alide_1516" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187629" misc_feature complement(order(1593206..1593214,1593434..1593439, 1593443..1593448,1593455..1593460,1593467..1593472, 1593479..1593484,1593491..1593493,1593497..1593517, 1593599..1593601,1593608..1593613,1593620..1593622, 1593635..1593637,1593647..1593649,1593656..1593658, 1593662..1593667,1593680..1593688)) /locus_tag="Alide_1516" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187629" misc_feature complement(order(1593473..1593475,1593485..1593487, 1593524..1593526,1593626..1593628)) /locus_tag="Alide_1516" /note="active site" /db_xref="CDD:187629" gene 1594278..1594751 /locus_tag="Alide_1517" /db_xref="GeneID:10103562" CDS 1594278..1594751 /locus_tag="Alide_1517" /inference="similar to AA sequence:KEGG:Cfla_1172" /note="KEGG: cfl:Cfla_1172 lipoate--protein ligase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126164.1" /db_xref="GI:319762227" /db_xref="GeneID:10103562" /translation="MEAELRRIQRELPVVQEKLAALDATMAAINPLVAPDAAGTVKAW AGKYGERGAVKDCVLSHLQAAGKSGIDVSTLTLQVAAALSVDLPTKKDFSLFRRDTVH AVLKRAKADGLTEVLVAARGGHTPQVWRWRGPHAAPSLAELQDLREALELANKGG" gene 1594753..1595382 /locus_tag="Alide_1518" /db_xref="GeneID:10103563" CDS 1594753..1595382 /locus_tag="Alide_1518" /inference="similar to AA sequence:KEGG:CC1G_12013" /note="manually curated; KEGG: cci:CC1G_12013 tRNA (guanine-N2-)-methyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126165.1" /db_xref="GI:319762228" /db_xref="GeneID:10103563" /translation="MSPVPNIKDIGRGNESGTLDQDDVPLRRTRTPSDLKWTVNELAA VKGEIEHIDREVTRLKQRRARLMRMAKALSTVTQVIAAEVHPAAVEPVHAHTRYGGRG NLRKYLRETLKAAHPGAVPTNVLAEGAVQVFGLRFSSCQERARFADNNLGNALRRMCA RGEVERLHDYAGLPTMSGVWRWKTPTPSLDELRKEEAVAGQHRRDASWR" gene 1595373..1595495 /locus_tag="Alide_1519" /db_xref="GeneID:10103564" CDS 1595373..1595495 /locus_tag="Alide_1519" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126166.1" /db_xref="GI:319762229" /db_xref="GeneID:10103564" /translation="MALTKTRTRTQTALTRLALLIANVHGELALVEGKRTANPC" sig_peptide 1595373..1595453 /locus_tag="Alide_1519" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.898) with cleavage site probability 0.879 at residue 27" gene complement(1595522..1597036) /locus_tag="Alide_1520" /db_xref="GeneID:10103565" CDS complement(1595522..1597036) /locus_tag="Alide_1520" /inference="similar to AA sequence:KEGG:Dtpsy_2523" /note="KEGG: dia:Dtpsy_2523 transposase IS66" /codon_start=1 /transl_table=11 /product="transposase is66" /protein_id="YP_004126167.1" /db_xref="GI:319762230" /db_xref="GeneID:10103565" /translation="MVIDEQALSELDAEQLREVTQRLLAELRHQRALNEKLTYECALL KRLKFAAQSERHSADQKSLLEDEIDADLAAVAVEIEQLQPPAAAPEAKQQPKRQPLPA HLPRREIRHEPESTTCACGCRMQRIGEDVAEKLDYVPGVFTVERYIRGKWACTQCETI TQAPVEAHVIDKGIPTAGLLAQVLVAKYQDHQPLYRQENIFGRAGLAIPRSTLAQWVG TCGARLQPLVDALKAEVLGHRVLHGDETPVAMLKPGSGKTHRAYLWAYAPGAFEATRA VVYDFCESRAGEHARAFLGDWRGSLICDDYAGYKASFSQGVTEAGCLAHARRKFFDLH AAGKSQIAELALMQFARVYEIERQVQPLAAPERLQVRQQHSRPILDALHQWMVLQRQQ VAGNSATAKALDYSLKRWAALTRFVDDPQLPPDNNWIENQIRPVALGRSNWLFAGSLR AGQRAAAVMSLIQSARMNGHDPYAYLKDVLTRLPTHKASRIEELLPHRWQPIDI" misc_feature complement(1596710..1596934) /locus_tag="Alide_1520" /note="Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007" /db_xref="CDD:193480" misc_feature complement(1596542..1596706) /locus_tag="Alide_1520" /note="putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; cl14891" /db_xref="CDD:196852" misc_feature complement(1595675..1596523) /locus_tag="Alide_1520" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1597119..1597451) /locus_tag="Alide_1521" /db_xref="GeneID:10103566" CDS complement(1597119..1597451) /locus_tag="Alide_1521" /inference="protein motif:PFAM:PF05717" /note="PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like" /codon_start=1 /transl_table=11 /product="is66 orf2 family protein" /protein_id="YP_004126168.1" /db_xref="GI:319762231" /db_xref="InterPro:IPR008878" /db_xref="GeneID:10103566" /translation="MIRIDEAWLATTPLDMRAGTDTALARVIATFGAAHPHHAYVFAN QRANRLKVLVHDGVGLWLAARRLHQGKFVWAPAGSPNVALEHAQLNALVLGLPWQRVG SQGAISVV" misc_feature complement(1597146..1597445) /locus_tag="Alide_1521" /note="putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; cl14891" /db_xref="CDD:196852" gene complement(1597448..1597876) /locus_tag="Alide_1522" /db_xref="GeneID:10103567" CDS complement(1597448..1597876) /locus_tag="Alide_1522" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126169.1" /db_xref="GI:319762232" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103567" /translation="MLKDPQTPRYAQRRTHRTYTPQFKAELVAACRQPGASVAAVALQ HGMNANVLHRWLKEWAQGFHRLEAGVSTAVVASPPPAFIPIDLSAVPPASAGELPSAS LPTPADGIRIECQRPGMSVTVHWPLSGAAECAQMLRELLR" misc_feature complement(1597634..1597840) /locus_tag="Alide_1522" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene complement(1598218..1598979) /locus_tag="Alide_1523" /db_xref="GeneID:10103568" CDS complement(1598218..1598979) /locus_tag="Alide_1523" /inference="similar to AA sequence:KEGG:CLH_2513" /note="KEGG: cbt:CLH_2513 1,4-beta-N-acetylmuramidase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126170.1" /db_xref="GI:319762233" /db_xref="GeneID:10103568" /translation="MTVGDIAMQEEANRQRTEEQAQARADAESEFQARKAAIVASIKA KRDAGRYEDALAEVARHATVSSDPVLAQLKTSVEEAARQTEAAACMASLAEKQAQYSS LFQQARFEEAAEVLKRCSVVTNAPELREKIAAALAQPYVRVLDDKTATLQDKQSALRS LDSISNAIAEPYQQVVRNLELKEEERRAAAERKRKKSEGVSIGMSKEDVLASNWGAPE RINRTTTSYGVREQWVYGSQNYLYFQNDVLVTIQN" gene complement(1599009..1599821) /locus_tag="Alide_1524" /db_xref="GeneID:10103569" CDS complement(1599009..1599821) /locus_tag="Alide_1524" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_3784 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126171.1" /db_xref="GI:319762234" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10103569" /translation="MVVQTLVDEHGMSERRACQASGIARSTLRYRAVARDDSGVIAFI QTHMALNPRHGFGLLYDSARHQGKPWGKTVLWRVYCELRLNLPRRGKKRLPARIKQPL QAAGQPNQGWSCDFMADALWSGRRFRTFNVIDEFNREGLRIEVDTSLPAARVIRALNE LVEVRGAPLSIRLDNGPEFIAHALAQWAQSKGIALNHIQPGKPTQNAYVERFNKTYRT EVLDCYVFDSLQEVRDMTADWLHRYNHHRPHEALGRIPPVEYRVKLFPNLYF" misc_feature complement(1599045..1599758) /locus_tag="Alide_1524" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(1599162..1599503) /locus_tag="Alide_1524" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1599839..1600105) /locus_tag="Alide_1525" /db_xref="GeneID:10103570" CDS complement(1599839..1600105) /locus_tag="Alide_1525" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126172.1" /db_xref="GI:319762235" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103570" /translation="MKKSRFSEAQIVGILKEVEMGAKVGETCRKHGISEPTYYKWKSQ FSGMTVSHLAQLRQLQDENAKLKRMYADLALMHHALKDVVDRKL" misc_feature complement(1599890..1600102) /locus_tag="Alide_1525" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene complement(1600574..1601818) /locus_tag="Alide_1526" /db_xref="GeneID:10103571" CDS complement(1600574..1601818) /locus_tag="Alide_1526" /inference="similar to AA sequence:KEGG:XAC3233" /note="KEGG: xac:XAC3233 transposase" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_004126173.1" /db_xref="GI:319762236" /db_xref="GeneID:10103571" /translation="MSAAMTINDAVAEGPKRFPLRKRTGTAAHHMSKAAVGFGLDDLD ALTPKEVVFFMADLLWGSHKEMACPHCGTADTHYWTVKELRWKCKGCGKRFSVTSGTV FADRKLPLVKILKMAFSWANGAAGKPALQLRRDWNVTYKTAFTLAHKLREGLLRGFNV GALCGIQEMDGMDINGRRYREKRNKPLGRGAAGKPKIPAHLLKPSVDPETGEIQGPPK PPKWDKTAKQPADRRLLLVIRQRSQAKKKGAVATRIGIALSETAATVVAMAKKFASAE SSVMSDEDPAYYSFSKLFTQHQTINHSKGYSDGKGVSNNLAESFNWRMRRSAEGIYLS PSNKYLADYAAENAWREDTRKLSTRDRLRQLLRTAMGVGLSQWWRGYVQGLHREHELL VEGEQPAKGRGRPKGWRPRPPR" misc_feature complement(1601537..1601659) /locus_tag="Alide_1526" /note="Transposase zinc-ribbon domain; Region: Zn_Tnp_IS1595; pfam12760" /db_xref="CDD:193236" misc_feature complement(1600763..1601170) /locus_tag="Alide_1526" /note="ISXO2-like transposase domain; Region: DDE_Tnp_IS1595; cl01481" /db_xref="CDD:194146" gene complement(1601829..1602530) /locus_tag="Alide_1527" /db_xref="GeneID:10103572" CDS complement(1601829..1602530) /locus_tag="Alide_1527" /inference="similar to AA sequence:KEGG:Reut_C5919" /note="KEGG: reu:Reut_C5919 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126174.1" /db_xref="GI:319762237" /db_xref="GeneID:10103572" /translation="MLHVTVHIGELENRSLHNQLLSLDIAYDKVEALASYLVAMLPRQ GSEMAGHLRDYPRWSGSLWDLVARAIAQVVYPNQAIPPAIKPDRRCAYASRICVAVEA EDMGSRGRLLANAEIAQLEGQRGMYRAVFREDILGERSAEFAYGSKRMDYADFVMRAI CWALYDQDTLGPRPKLLLPQTMTANGVECFDVQGLAEPARTGFTRYLARKYPTQAPAA LARADDYVAFLFNKS" gene complement(1602530..1602829) /locus_tag="Alide_1528" /db_xref="GeneID:10103573" CDS complement(1602530..1602829) /locus_tag="Alide_1528" /inference="similar to AA sequence:KEGG:Mpe_B0404" /note="KEGG: mpt:Mpe_B0404 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126175.1" /db_xref="GI:319762238" /db_xref="GeneID:10103573" /translation="MRVKVKLLQHKGRALKRPELLDVPPFEGVLKVNEARDYDLSRAV VRARLIQATSGLQTDVLPELSDVRLVWAEDNKLRLTGFEEVDGAAYAQTWVVETA" gene complement(1603005..1603586) /locus_tag="Alide_1529" /db_xref="GeneID:10103574" CDS complement(1603005..1603586) /locus_tag="Alide_1529" /EC_number="3.4.21.88" /inference="protein motif:TFAM:TIGR00498" /note="TIGRFAM: LexA repressor; KEGG: bpy:Bphyt_3718 LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region" /codon_start=1 /transl_table=11 /product="lexa repressor" /protein_id="YP_004126176.1" /db_xref="GI:319762239" /db_xref="GO:0004252" /db_xref="InterPro:IPR006197" /db_xref="InterPro:IPR006200" /db_xref="InterPro:IPR019759" /db_xref="GeneID:10103574" /translation="MTEHDEKHLAKLRTHWKRHAAFPSMAKLCETVGLSSTSSVFALV GRLVEAGYLERVDGRIAPTRKFFARPLLSPVRAGQPQPASQEEPEVLTIDDYLIDDPN RTSLHKVRGDSMKDAGILEGDLVVVEHHTPTKPGDIVVAWADNELTVKTLLLDPQSRY YLQPANSAYKPIFPATSLEVMGVVIGVVRKTRR" misc_feature complement(1603017..1603553) /locus_tag="Alide_1529" /note="LexA repressor; Validated; Region: PRK00215" /db_xref="CDD:178931" misc_feature complement(1603032..1603265) /locus_tag="Alide_1529" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature complement(order(1603137..1603139,1603248..1603250)) /locus_tag="Alide_1529" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 1603885..1604208 /locus_tag="Alide_1530" /db_xref="GeneID:10103575" CDS 1603885..1604208 /locus_tag="Alide_1530" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126177.1" /db_xref="GI:319762240" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103575" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature 1603885..1604142 /locus_tag="Alide_1530" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1604205..1605119 /locus_tag="Alide_1531" /db_xref="GeneID:10103576" CDS 1604205..1605119 /locus_tag="Alide_1531" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126178.1" /db_xref="GI:319762241" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10103576" /translation="MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSAR AQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIVVARCTVERLMRAMGLQGARRG RAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAASDTSTKVST" misc_feature 1604265..1605101 /locus_tag="Alide_1531" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature 1604580..1604936 /locus_tag="Alide_1531" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1605339..1606388) /locus_tag="Alide_1532" /db_xref="GeneID:10103577" CDS complement(1605339..1606388) /locus_tag="Alide_1532" /inference="protein motif:PFAM:PF01547" /note="PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_1607 extracellular solute-binding protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_004126179.1" /db_xref="GI:319762242" /db_xref="GO:0005215" /db_xref="InterPro:IPR006059" /db_xref="InterPro:IPR006061" /db_xref="GeneID:10103577" /translation="MHKPMKSLLAICVLATAGAACAQEQVVNLYSARHYATDEALYSG FTKATGIKVNRVDSDDAGIMARLKAEGTASPADVILLVDAARLYRGEADGLFLPVRSK VLEDAIPANLRATPAADGGIAWFGLSTRARVIVYNKAKVNKDDVDTYEELGAPKNKGK LCIRSGSHPYNLSLFGAVTEHMGEQKAEAWLKGVVNNLARAPKGGDTDQIKAVAAGEC DIAVTNSYYLARLMRSEKPEDKAVVEKVTVVFPNQQSWGTHMNIAGGAVARHTKHQAN AIKFLEYLASPEAQNYFANGNNEWPAAKGVDPGNPALKAMTDGKPFKSETIPISAVGA NTVKVQQMLDRVGFR" sig_peptide complement(1606320..1606388) /locus_tag="Alide_1532" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 23" misc_feature complement(1605345..1606268) /locus_tag="Alide_1532" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1606671..1607225) /locus_tag="Alide_1533" /db_xref="GeneID:10103578" CDS complement(1606671..1607225) /locus_tag="Alide_1533" /inference="protein motif:TFAM:TIGR01841" /note="KEGG: dia:Dtpsy_1366 phasin family protein; TIGRFAM: phasin family protein; PFAM: Phasin" /codon_start=1 /transl_table=11 /product="phasin family protein" /protein_id="YP_004126180.1" /db_xref="GI:319762243" /db_xref="InterPro:IPR010127" /db_xref="InterPro:IPR018968" /db_xref="GeneID:10103578" /translation="MSLTPEQILASHKANIETLFGLTNKAFEGVEKLVQLNVAASRAA LTEAATHAQAVLSVKDAQELLALQAGLFQPLAEKAAAYSRHVYEIASGTGAEFGKAFE SQAAEAQRNFSNLVDTAAKNAPAGSETTVAVFKSAVSAANNAFESVQKAVKQASDVAE ANFNAVANSAANAAKTVEVAARKR" misc_feature complement(1606908..1607213) /locus_tag="Alide_1533" /note="Phasin protein; Region: Phasin_2; cl11491" /db_xref="CDD:196249" gene 1607483..1607956 /locus_tag="Alide_1534" /db_xref="GeneID:10103579" CDS 1607483..1607956 /locus_tag="Alide_1534" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_1367 thioesterase superfamily protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004126181.1" /db_xref="GI:319762244" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10103579" /translation="MNALSVPPSTALVPPRPRPQPRDAYRAFRSIGTRWMDNDIYGHV NNVVYYSWFDTAVNAYLIEQGALDIHQGDTIGLVIETQCNYFAPLAFPQTIDAGIRVA RLGESSVRYEVGLFAQSEAVSAACGHFVHVYVGRDDRRPRPLPQRLRQVLQPLCI" misc_feature <1607525..>1607638 /locus_tag="Alide_1534" /note="Acyl-ACP thioesterase [Lipid metabolism]; Region: FatA; COG3884" /db_xref="CDD:33673" misc_feature 1607582..1607884 /locus_tag="Alide_1534" /note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active...; Region: 4HBT; cd00586" /db_xref="CDD:48031" misc_feature order(1607642..1607644,1607708..1607710,1607714..1607716, 1607795..1607806) /locus_tag="Alide_1534" /note="active site" /db_xref="CDD:48031" gene 1608106..1609305 /locus_tag="Alide_1535" /db_xref="GeneID:10103580" CDS 1608106..1609305 /locus_tag="Alide_1535" /inference="protein motif:TFAM:TIGR01514" /note="KEGG: dia:Dtpsy_1368 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like" /codon_start=1 /transl_table=11 /product="nicotinate phosphoribosyltransferase" /protein_id="YP_004126182.1" /db_xref="GI:319762245" /db_xref="GO:0004516" /db_xref="InterPro:IPR006406" /db_xref="InterPro:IPR007229" /db_xref="InterPro:IPR015977" /db_xref="GeneID:10103580" /translation="MIITSLLDTDLYKFTMMQVVLHQFPGAQVEYRFKCRNPGVELAP FASEIRDEIRALCTLQFQDAELAYLRSMRFIKSDFVDFLGLFRLNEKYIRVSALPTGE IDITITGPWLHTILFEIPVLAIVNEVYFRNTQKVPDFPEGRRRLDAKIAQLQASGLER LKIADYGTRRRFSRAWHEEVLRVLCARLGTDGRGDGDAGRFAGTSNVLYAMKLGVTPL GTMAHEYLQACQSLGPRLRDTQVFGFEMWAKEYRGDLGIALSDVYGMNAFLRDFDLYF CKLFDGARHDSGDPFAWGERLLQHYRDNRVDPLTKTLIFSDALTVPRIIELFQRFHGR CQLAFGIGTNLTNDLGCEPLQIVVKMTRCNGQPVAKLSDAPGKNMCDDEKYLAYLRQV FDIPTPA" misc_feature 1608109..1609293 /locus_tag="Alide_1535" /note="nicotinate phosphoribosyltransferase; Region: NAPRTase; TIGR01514" /db_xref="CDD:130578" misc_feature 1608118..1609242 /locus_tag="Alide_1535" /note="Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting...; Region: PncB_like; cd01401" /db_xref="CDD:29613" misc_feature order(1608607..1608615,1608715..1608720,1608961..1608963, 1609051..1609056,1609123..1609125,1609129..1609134, 1609141..1609143) /locus_tag="Alide_1535" /note="active site" /db_xref="CDD:29613" gene 1609353..1610765 /locus_tag="Alide_1536" /db_xref="GeneID:10103581" CDS 1609353..1610765 /locus_tag="Alide_1536" /inference="similar to AA sequence:KEGG:Ajs_2491" /note="KEGG: ajs:Ajs_2491 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004126183.1" /db_xref="GI:319762246" /db_xref="GeneID:10103581" /translation="MKVFRMLALAMACMASPLAMAADIDGSRLSVLWGVPFAGILLSI ALLPLLAPMFWHHHFGKVAAAWALAFLVPFAFVYGPGAAAAGFVHALVAEYIPFVILL TALFTVAGGIYIRGNLHGSPALNTGLLAVGAVLASFMGTTGASMLLIRPLIRANDNRK HVAHVVVFFIFIVSNAGGSLTPLGDPPLFLGFLKGVDFSWTVRHIFPDTLFLVGVLLA LFYAFDSWYYRQAGEVGRSDPTPDSPPQALGFDGKVNFVLLLAVVALVLLSGVWKSPV EWVIAGTPVGLPGLVRDLGLIVVTLVSLALTPRQVHADNQFGWGPMQEVAKLFAGIFL TIIPVIAMLKAGVDGPFGAIVSAVTRADGSPDPAMYFWATGVLSSFLDNAPTYLVFFN TAGGDPATLMTTHAATLAAISAGAVFMGANTYIGNAPNLMVKAIAEDRGVKMPSFFGY MLWSGAILVPLFVAMTFIFF" sig_peptide 1609353..1609418 /locus_tag="Alide_1536" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" misc_feature 1609515..1610762 /locus_tag="Alide_1536" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene 1610782..1611762 /locus_tag="Alide_1537" /db_xref="GeneID:10103582" CDS 1610782..1611762 /locus_tag="Alide_1537" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dia:Dtpsy_1370 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein" /protein_id="YP_004126184.1" /db_xref="GI:319762247" /db_xref="GO:0005215" /db_xref="GO:0048037" /db_xref="GO:0051287" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:10103582" /translation="MPEPRILVTRRIFPEVIERLSRHFEVESNPDDVLWTQAELAQRM ADKDGAFTTGSHRIDKALLAVSPRLKIVANMAVGYNNFDVEAMTAAGVQATNTPDVLT ETTADFGFALLMATARRITESEHYLRAGQWTRWSYDMFAGGEVHGSTLGILGMGRIGQ GIARRGAHGFGMDVIYHNRSRLSPELEAECKARYVGKDELLAQADHLVLVLPYTPESH HAIGAAEIARMKTTATLINIARGGIVDDAALAEALKDRRIAAAGLDVFEGEPSVHPGL LEVPNVVLTPHIASATVATRLAMANLAADNLIAFFEKGAPLTPVNRIASR" misc_feature 1610791..1611747 /locus_tag="Alide_1537" /note="glyoxylate reductase; Reviewed; Region: PRK13243" /db_xref="CDD:183914" misc_feature 1611109..1611648 /locus_tag="Alide_1537" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 1611836..1613434 /locus_tag="Alide_1538" /db_xref="GeneID:10103583" CDS 1611836..1613434 /locus_tag="Alide_1538" /inference="protein motif:PFAM:PF02646" /note="PFAM: protein of unknown function DUF195; KEGG: azo:azo2787 RumC-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126185.1" /db_xref="GI:319762248" /db_xref="InterPro:IPR003798" /db_xref="GeneID:10103583" /translation="MSTELLAVLAAILSIVLALGLGLLWGAARARREAEAGREQALAA ARAEAQAEALARIAAAQERVRGLESERAGLQAELQQLKAQASAWREALDTARDERAQM AERAARVPALEAQLQEQGQLAQALRQQLAALQAQAAAQAAQADAERRAAQEKLALLTE AREALTHQFKSLANDILEEKGRRFAEQNQQSLGQLLDPLRTRLAEFQGKVEQFYDAEG RQRSALAQQVHQLMGLNQTLSEDAKNLTQALKGSTKAQGNWGELILERVLESAGLRRG FEYDVQENHLRDDGSRAQPDVVIHLPEDRHLVVDAKVSLLAYEEWATGDDETLRAAAQ RRHLDSVRQHIKGLAERNYQQLYGLQSLDFVLMFVPIEPAFMLAVSGDGQLYGDAWNR NVLLVSPSTLLFVVRTVAHLWRQEAQTRNAQEIARRGAELYDHLTAFVEELEKVGKGL AQASDAYHRAFNKLSKSRGNVIRRAEMLKELGIKPAKALPPALVEAAREGDSEENTAA TLAQPALGASEDVAEEGPSGKGAA" sig_peptide 1611836..1611928 /locus_tag="Alide_1538" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.646) with cleavage site probability 0.361 at residue 31" misc_feature 1612400..1613308 /locus_tag="Alide_1538" /note="RmuC family; Region: RmuC; pfam02646" /db_xref="CDD:111535" gene 1613431..1614594 /locus_tag="Alide_1539" /db_xref="GeneID:10103584" CDS 1613431..1614594 /locus_tag="Alide_1539" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_1372 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126186.1" /db_xref="GI:319762249" /db_xref="InterPro:IPR001958" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10103584" /translation="MNWALARLIAGQICIHACMAGMRMAAPLLALRQGYSAAAVGVLL ALFALTQVFLALPAGRYADRHGLKRPVRHAVVAAVLGAGGAFAWPVFPMLCVAALLTG GATGAATIALQRHVGRAAHDATQLKQVFSWLAIGPAVSNFLGPFCAGLLIDHAGAQAG GTGGFRAAFALMAVLPLATWFWVRTAQELPSVIAAAGGPRQRAWDLMADVGFRRLLIV NWLLSSCWDVHTFVVPLLGYERGLSASVIGSILGAFAIAAALIRVLMPLVAERLREAT VVTWAMGMTAVLFAVYPLLPTALALGTCSVLLGFALGSVQPMVMSLLHQITPAHRHGE ALGLRLMAINGSSVLMPLLFGSASALIGVSGLFWMVGATVGLGSRVAWRLGDR" misc_feature 1613578..1614483 /locus_tag="Alide_1539" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature 1614064..>1614582 /locus_tag="Alide_1539" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(1614106..1614108,1614115..1614123,1614127..1614132, 1614181..1614183,1614190..1614195,1614202..1614204, 1614214..1614219,1614223..1614228,1614364..1614369, 1614376..1614381,1614388..1614393,1614400..1614402, 1614436..1614441,1614448..1614453,1614469..1614471) /locus_tag="Alide_1539" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(1614609..1615472) /locus_tag="Alide_1540" /db_xref="GeneID:10103585" CDS complement(1614609..1615472) /locus_tag="Alide_1540" /inference="protein motif:PFAM:PF03641" /note="PFAM: Conserved hypothetical protein CHP00730; KEGG: ajs:Ajs_2487 hypothetical protein" /codon_start=1 /transl_table=11 /product="conserved hypothetical protein chp00730" /protein_id="YP_004126187.1" /db_xref="GI:319762250" /db_xref="InterPro:IPR005269" /db_xref="GeneID:10103585" /translation="MQANTDLQDSRLANAWAELHNYAVAGNPLHPDSYRLAFADPEFM LRRETRGIRFQLELLKPDLEQAAQGIEHTVVVYGSARFVSPEAAAQQLAEAQASGDGE RIARAERAVKNAQYYDLARQFARHVADYSLSRPPAERLYVCTGGGPGIMEAANRGAYE AGAPTIGLNITLPHEQSGNRYITPALSFKFHYFALRKMHFMMRAKALVLFPGGFGTLD ELFEVLTLVQTGKAKPAPIVLFGTAFWKRLINFEALVEQGTVSPEDLKLFHYTDDPAE AWGIIRAFYEL" misc_feature complement(1614618..1615163) /locus_tag="Alide_1540" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene complement(1615602..1615997) /locus_tag="Alide_1541" /db_xref="GeneID:10103586" CDS complement(1615602..1615997) /locus_tag="Alide_1541" /inference="protein motif:TFAM:TIGR00494" /note="KEGG: dia:Dtpsy_1374 camphor resistance protein CrcB; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein" /codon_start=1 /transl_table=11 /product="crcb protein" /protein_id="YP_004126188.1" /db_xref="GI:319762251" /db_xref="InterPro:IPR003691" /db_xref="GeneID:10103586" /translation="MLHALAIFAGAGVGALARWRLGLWLNTQGSLLPWGTLAANLVGG YLIGLCLALFQALPQLDPAWRMLLITGFLGGLTTFSTFSAEVVTLLLEQRLALALGVC AVHVAGSLCLTWAGLRSLPLLLPHLRTII" misc_feature complement(1615650..1615997) /locus_tag="Alide_1541" /note="CrcB-like protein; Region: CRCB; cl09114" /db_xref="CDD:195794" gene complement(1616021..1617796) /locus_tag="Alide_1542" /db_xref="GeneID:10103587" CDS complement(1616021..1617796) /locus_tag="Alide_1542" /inference="protein motif:PFAM:PF00246" /note="PFAM: peptidase M14 carboxypeptidase A; KEGG: dia:Dtpsy_1379 hypothetical protein" /codon_start=1 /transl_table=11 /product="peptidase m14 carboxypeptidase a" /protein_id="YP_004126189.1" /db_xref="GI:319762252" /db_xref="GO:0004181" /db_xref="GO:0008270" /db_xref="InterPro:IPR000834" /db_xref="GeneID:10103587" /translation="MTASTVLDLPLERTLHAWVRRFSQPRWHGRHVEGWLFEGRAERL AAEQQLAAVGVHARFHSAYKPLVQHFIDHVDLEQLAAAHVRYPVPATGPRQRFRLEAY PLAALLGEDALRLEPRGDANPWYDVQLHLRDGQCLEQRVRAPNRAHADTTGAAALSPC GWLRAGTQAGAADLLDIAVCTDFERAFHHAVQAVREHPWPPGEPYFERLLLRIDLPGF EQPIAWAGETISTAEALHEDLYFSLLEFFQQHSGRPLGDRRLQPGQIVPDVRTGSAAP RVRVSLQPFDAAAQDALAARKGLRAAAGQPLESLDRAPAPEHIAQILQSWPGRRFSAP TRQGRTVWGLYHPGTQCPVFISGGQHANETSGVVGALRAAEALRQQDGAHFALIALEN PDGYALHAELCAWHAGHMHHAARYTALGDDVEYRETAPLLEREARQAALALSGAQLHV NLHGYPAHEWTRPLSGYVPRGFEQWMCPKGFFLILRHHAGWQQPARALLEAVCAQLAQ VPGLAEFNARQRALYERHAGPLPFEVLHGIACMQTQTAHDAPVTLVTEFPDETVCGDA FRFAHTVQMHTALAAAQAWQGIAPR" misc_feature complement(1616144..1616860) /locus_tag="Alide_1542" /note="Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains...; Region: Peptidase_M14-like_5; cd06232" /db_xref="CDD:133090" misc_feature complement(order(1616210..1616212,1616414..1616416, 1616435..1616440,1616522..1616527,1616552..1616554, 1616708..1616710,1616717..1616719)) /locus_tag="Alide_1542" /note="putative active site [active]" /db_xref="CDD:133090" misc_feature complement(order(1616438..1616440,1616708..1616710, 1616717..1616719)) /locus_tag="Alide_1542" /note="Zn-binding site [ion binding]; other site" /db_xref="CDD:133090" gene complement(1617799..1618170) /locus_tag="Alide_1543" /db_xref="GeneID:10103588" CDS complement(1617799..1618170) /locus_tag="Alide_1543" /inference="protein motif:PFAM:PF03334" /note="PFAM: Na+/H+ antiporter subunit; KEGG: dia:Dtpsy_1381 Na+/H+ antiporter subunit" /codon_start=1 /transl_table=11 /product="na+/h+ antiporter subunit" /protein_id="YP_004126190.1" /db_xref="GI:319762253" /db_xref="GO:0005451" /db_xref="InterPro:IPR005133" /db_xref="GeneID:10103588" /translation="MTPQALPLWLDIAVSVLVLAGAAIAFLGSLGLLRLKTYFERVHA PAIIATLGCWCIMHATLVYFSAVGDGLALHALLIALFVAVTVPVTNIFLMRAALFRAR RTGENVPPNLSRTTDDHVRDF" misc_feature complement(<1617904..1618170) /locus_tag="Alide_1543" /note="Na+/H+ antiporter subunit; Region: PhaG_MnhG_YufB; cl00583" /db_xref="CDD:197412" gene complement(1618167..1618448) /locus_tag="Alide_1544" /db_xref="GeneID:10103589" CDS complement(1618167..1618448) /locus_tag="Alide_1544" /inference="protein motif:PFAM:PF04066" /note="PFAM: multiple resistance and pH regulation protein F; KEGG: dia:Dtpsy_1382 multiple resistance and pH regulation protein F" /codon_start=1 /transl_table=11 /product="multiple resistance and ph regulation protein f" /protein_id="YP_004126191.1" /db_xref="GI:319762254" /db_xref="GO:0015075" /db_xref="InterPro:IPR007208" /db_xref="GeneID:10103589" /translation="MTSPILSWALPIALFLLVAAMVLCLARLLRGPAAQDRVLALDCM YLNGMLLMLALGIYYGSANYFEAAMLIALLGFASSTAMAKFLLRGEVIE" sig_peptide complement(1618368..1618448) /locus_tag="Alide_1544" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.779 at residue 27" misc_feature complement(1618170..1618436) /locus_tag="Alide_1544" /note="Multiple resistance and pH regulation protein F (MrpF / PhaF); Region: MrpF_PhaF; cl09154" /db_xref="CDD:186841" gene complement(1618445..1618936) /locus_tag="Alide_1545" /db_xref="GeneID:10103590" CDS complement(1618445..1618936) /locus_tag="Alide_1545" /inference="protein motif:PFAM:PF01899" /note="PFAM: cation antiporter; KEGG: dia:Dtpsy_1383 monovalent cation/H+ antiporter subunit E" /codon_start=1 /transl_table=11 /product="cation antiporter" /protein_id="YP_004126192.1" /db_xref="GI:319762255" /db_xref="GO:0008324" /db_xref="InterPro:IPR002758" /db_xref="GeneID:10103590" /translation="MMKRLLPAPLVSLGLFVMWLLLNRSMSAGHVLLALVLALGLPLM FHELRPQKVRVRSFGAVVRLCFRVMVDTTRSNIAVLRFLLLPGTRRHPPDFVKIPLEL RDPNGLAVLAMIVCITPGTAWAELSLDRSMLMLHVLEVDDPQAIVHHVKTCYERPLME IFE" misc_feature complement(1618448..1618936) /locus_tag="Alide_1545" /note="Na+/H+ ion antiporter subunit; Region: MNHE; cl00807" /db_xref="CDD:186198" sig_peptide complement(1618847..1618936) /locus_tag="Alide_1545" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.607) with cleavage site probability 0.242 at residue 30" gene complement(1618933..1620645) /locus_tag="Alide_1546" /db_xref="GeneID:10103591" CDS complement(1618933..1620645) /locus_tag="Alide_1546" /inference="protein motif:PFAM:PF00361" /note="PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ajs:Ajs_2476 monovalent cation/H+ antiporter subunit D" /codon_start=1 /transl_table=11 /product="NADH/ubiquinone/plastoquinone (complex i)" /protein_id="YP_004126193.1" /db_xref="GI:319762256" /db_xref="GO:0008137" /db_xref="InterPro:IPR001750" /db_xref="GeneID:10103591" /translation="MSHLSELTAAAMPHLMLAPIALPMFTAAFLLLLREEQQRLKFGL SVLSTLAGLLVASALLQWTHQASAPASMGVYLPGNWPAPFGIVLVLDRLSALMLLLTN IVALCSVLFAGARWQRAGVHYHTLFQFQLMGLSGAFLTADLFNLFVFFEILLAASYGL LLHGSGRARVQSGLHYIAINLAASSLFLIGASMFYGITGTLNMADLAQGMAHVSAEDR GLLHAAAAILATAFLIKAAMWPLNFWLVPAYSAATAPVGALFALMTKVGVYTLLRLWT LMFGTEAGASALFGSLWLIVGGMATMAFGAIGMMGSQRLTHLAGHAAVLSSGTLLAAA GFGQNALTAGLLYYLPSSTLAVGALFLLADLIDRWRNDGTTLAPYESDDDAPFLSPEL VPTAGLNLDDDEQVLVGRVIPASAAFMGLAYLMCTLVIAGLPPLSGFIGKFAMLTALL NPLGLGSSAGTRPGPVGWTLLALMIGTGLFALMALTRSGIRHFWASPERSMPQLRVLE GLPIAVLLGACVTLTLQAEGVMRFTTATANALHAPGTYVRAVMSAPPRPAPAAAVQAG GAVQ" misc_feature complement(1619008..1620612) /locus_tag="Alide_1546" /note="putative monovalent cation/H+ antiporter subunit D; Reviewed; Region: PRK12666" /db_xref="CDD:183666" misc_feature complement(1619299..1620222) /locus_tag="Alide_1546" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" gene complement(1620707..1621072) /locus_tag="Alide_1547" /db_xref="GeneID:10103592" CDS complement(1620707..1621072) /locus_tag="Alide_1547" /inference="protein motif:PFAM:PF00420" /note="PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dia:Dtpsy_1385 monovalent cation/H+ antiporter subunit C" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone oxidoreductase chain 4l" /protein_id="YP_004126194.1" /db_xref="GI:319762257" /db_xref="GO:0008137" /db_xref="InterPro:IPR001133" /db_xref="GeneID:10103592" /translation="MEIVLAISIGVLTGSGVWLLLRPRTFQVIMGLSLLSYAVNLFIF SMGRLGLAVDKEPVLVPGVPPDLQHYADPLPQALVLTAIVIGFAMTALFLVVLLASRG ISGTDHVDGTHAREQQEMP" misc_feature complement(1620725..1621072) /locus_tag="Alide_1547" /note="NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; Region: Oxidored_q2; cl00492" /db_xref="CDD:186032" gene complement(1621073..1624033) /locus_tag="Alide_1548" /db_xref="GeneID:10103593" CDS complement(1621073..1624033) /locus_tag="Alide_1548" /inference="protein motif:PFAM:PF00361" /note="PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: dia:Dtpsy_1386 monovalent cation/H+ antiporter subunit A" /codon_start=1 /transl_table=11 /product="NADH/ubiquinone/plastoquinone (complex i)" /protein_id="YP_004126195.1" /db_xref="GI:319762258" /db_xref="GO:0008137" /db_xref="InterPro:IPR001750" /db_xref="InterPro:IPR003916" /db_xref="InterPro:IPR007182" /db_xref="GeneID:10103593" /translation="MPLILLVALPFIASLLAAALPANARNTESTLAGLVALACTAQVA LCFPDVANGGVLHQEVAWLPSLGMNLVIRMDGFAWMFSMLVFGIGSLVVLYARYYMSP ADPVPRFFSFFLAFMGAMAGVVLSGNIIQLVFFWELTSLFSFLLIGYWHHREDARRGA RMALTVTGTGGLCLLAGMLVVGHIVGSYDMDRVLGAAELVRDHPLYLTALVLVLLGAF TKSAQFPFQFWLPNAMAAPTPVSSYLHSATMVKAGVFLLARFWPVMGGTEPWFWLVGG TGLATLLIGGYAAMFQDDLKGLLAYSTISHLGLITLLLGLNSPLAAVAAVFHIMNHAT FKASLFMAAGIIDHESGTRDIRRLSGLRRMMPITATLATVASAAMAGVPLLNGFLSKE MFFAETVFIDAAPLVATLLPATATVAGMFSVAYSLRFIVDVFWGPPATDLPHQPHEPP HWMRVPVELLVCACLVVGILPAWSVGRYLDAAALPVVGGSLPAFSLAVWHGINAPLVM SFVALVGGAALYLLLRRERDRGRISAPPLMHRISGRHIFEAALTRLTLLGRGGRRLLS TRRLQWQMLWLVLVALAGAAMPLWTRGMHLGERGTLPLSPTFVLLWALGMVCAVSAAW QAKYHRLAALTLMGGAGLCTAITFLWFSAPDLALTQLSVEVVTTILILLGLRWLPKRD ESLPALQASTALTRARRLRDLFLSVIAGAGMGWLALAMMSRPFAQSTSTFFLERALSE GGGTNVVNVMLVDFRGFDTFGEIVVLGVVAITVYALLRRFRPAGEAMDLPEQQRFLPA DLQTDLLNPRHASDTAIGYLMVPAVLVRLLLPFTALVAFYLFMRGHNEPGGGFVAGLV FSVGLVLQYMISGTTWVEAHLPLLPRRWIAWGLLLALGTGLGALILGYPFLTSHTAHV SLPLIGEIHVASAMFFDMGVFSLVVGATLLILTAIAHQSVRSHRHHARLLEEQQLAIA AVVSYGDDGMQEQR" misc_feature complement(1621133..1624033) /locus_tag="Alide_1548" /note="putative monovalent cation/H+ antiporter subunit A; Reviewed; Region: PRK12648" /db_xref="CDD:183648" sig_peptide complement(1623959..1624033) /locus_tag="Alide_1548" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.610) with cleavage site probability 0.596 at residue 25" misc_feature complement(1623692..1623850) /locus_tag="Alide_1548" /note="NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662" /db_xref="CDD:109709" misc_feature complement(1622846..1623658) /locus_tag="Alide_1548" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" misc_feature complement(1621688..1622203) /locus_tag="Alide_1548" /note="Domain related to MnhB subunit of Na+/H+ antiporter; Region: MnhB; cl00676" /db_xref="CDD:186140" misc_feature complement(<1621409..1621837) /locus_tag="Alide_1548" /note="Domain related to MnhB subunit of Na+/H+ antiporter; Region: MnhB; cl00676" /db_xref="CDD:186140" misc_feature complement(1621199..1621519) /locus_tag="Alide_1548" /note="Domain related to MnhB subunit of Na+/H+ antiporter; Region: MnhB; cl00676" /db_xref="CDD:186140" gene complement(1624122..1624442) /locus_tag="Alide_1549" /db_xref="GeneID:10103594" CDS complement(1624122..1624442) /locus_tag="Alide_1549" /inference="similar to AA sequence:KEGG:Ajs_2473" /note="KEGG: ajs:Ajs_2473 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126196.1" /db_xref="GI:319762259" /db_xref="GeneID:10103594" /translation="MANRFLPALCLAALLHAGTALAAVDVNRAREADLDGIKGIGPAL SSRILAERAKGRFQDWRDLISRVKGIGPAAAARLSENGLTVDGASYAPQDARPGAAGT APSH" sig_peptide complement(1624374..1624442) /locus_tag="Alide_1549" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 23" misc_feature complement(1624233..>1624343) /locus_tag="Alide_1549" /note="Protein of unknown function, DUF655; Region: DUF655; cl00648" /db_xref="CDD:120004" gene complement(1624442..1625600) /locus_tag="Alide_1550" /pseudo /db_xref="GeneID:10103595" gene complement(1625590..1625901) /locus_tag="Alide_1551" /db_xref="GeneID:10103596" CDS complement(1625590..1625901) /locus_tag="Alide_1551" /inference="similar to AA sequence:KEGG:Dtpsy_1389" /note="KEGG: dia:Dtpsy_1389 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126197.1" /db_xref="GI:319762260" /db_xref="GeneID:10103596" /translation="MKYLLWLLKAAIFFTLFAFALNNQQDATVHFFFGTRWTAPAVLI VLSAFTLGVVVGVLGMVPRWWRHRSAARRAQAAAQEPSPAAPAQPPAEPTMPQTPIDG I" sig_peptide complement(1625839..1625901) /locus_tag="Alide_1551" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.956) with cleavage site probability 0.644 at residue 21" misc_feature complement(<1625701..1625838) /locus_tag="Alide_1551" /note="Protein of unknown function (DUF1049); Region: DUF1049; cl01539" /db_xref="CDD:194160" gene complement(1626107..1626892) /locus_tag="Alide_1552" /db_xref="GeneID:10103597" CDS complement(1626107..1626892) /locus_tag="Alide_1552" /inference="protein motif:PFAM:PF00639" /note="PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_2031 PpiC-type peptidyl-prolyl cis-trans isomerase" /codon_start=1 /transl_table=11 /product="ppic-type peptidyl-prolyl cis-trans isomerase" /protein_id="YP_004126198.1" /db_xref="GI:319762261" /db_xref="GO:0016853" /db_xref="InterPro:IPR000297" /db_xref="GeneID:10103597" /translation="MKKQLLSGLVAAAMLGTMALPVAAQNIAIVNGKAVPKERAEALK QQVERAGRPVTPEMENQIKEEVVAREIFMQEAQKRGLEGTADYKTQMELARQTILIRE LFVDFQKNNPVTDAEIQAEYDKFVAANAGKEYKASHILVAKEDEAKSIIASIKKGAKF EDIAKKQSKDPGSGARGGDLDWANPGSYVPEFTEALVKLEKGKMTQTPVKSQFGWHVI RLDDVRDAQLPKLDEVKPQIAQQLQQQKLAKFQEDLRAKAKVE" sig_peptide complement(1626818..1626892) /locus_tag="Alide_1552" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.960 at residue 25" misc_feature complement(1626188..1626868) /locus_tag="Alide_1552" /note="peptidylprolyl isomerase; Reviewed; Region: prsA; PRK03002" /db_xref="CDD:101162" misc_feature complement(1626227..>1626415) /locus_tag="Alide_1552" /note="PPIC-type PPIASE domain; Region: Rotamase; cl08278" /db_xref="CDD:195679" gene complement(1626959..1627237) /locus_tag="Alide_1553" /db_xref="GeneID:10103598" CDS complement(1626959..1627237) /locus_tag="Alide_1553" /inference="protein motif:PFAM:PF01722" /note="PFAM: BolA family protein; KEGG: dia:Dtpsy_2030 BolA family protein" /codon_start=1 /transl_table=11 /product="bola family protein" /protein_id="YP_004126199.1" /db_xref="GI:319762262" /db_xref="InterPro:IPR002634" /db_xref="GeneID:10103598" /translation="MTATTPVSVTAEAMAERLRATLAPTRLEVLDESWQHEGHAGANG TGFGTHFRVRIASPLFAGKRKVAQHRLVYDALQIFIDHGAHAIAIETL" misc_feature complement(1626962..1627219) /locus_tag="Alide_1553" /note="BolA-like protein; Region: BolA; cl00386" /db_xref="CDD:185958" gene complement(1627234..1627791) /locus_tag="Alide_1554" /db_xref="GeneID:10103599" CDS complement(1627234..1627791) /locus_tag="Alide_1554" /inference="protein motif:TFAM:TIGR00997" /note="KEGG: ajs:Ajs_1675 intracellular septation protein A; TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A" /codon_start=1 /transl_table=11 /product="intracellular septation protein a" /protein_id="YP_004126200.1" /db_xref="GI:319762263" /db_xref="InterPro:IPR006008" /db_xref="GeneID:10103599" /translation="MKLLIDFFPIILFFAAFKVWGIYVATGVAIAATVAQIAYIHVRH GKVEPMQWLSLGVIVVFGGATLLAHSETFIKWKPTVLYWLMGGTLLVGQLVFRKNFIQ SLMGKQIELPAPVWRQLNWAWTTFFAAMGLLNLWVAYRFDTDTWVNFKLFGGLGLMFA FVIAQALFLSRHMKEGDAAPEDSQP" misc_feature complement(1627267..>1627668) /locus_tag="Alide_1554" /note="Intracellular septation protein A; Region: IspA; cl01098" /db_xref="CDD:186332" gene complement(1627788..1628201) /locus_tag="Alide_1555" /db_xref="GeneID:10103600" CDS complement(1627788..1628201) /locus_tag="Alide_1555" /EC_number="1.8.4.12" /inference="protein motif:TFAM:TIGR00357" /note="TIGRFAM: methionine-R-sulfoxide reductase; KEGG: dia:Dtpsy_2028 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B" /codon_start=1 /transl_table=11 /product="methionine-r-sulfoxide reductase" /protein_id="YP_004126201.1" /db_xref="GI:319762264" /db_xref="GO:0008113" /db_xref="InterPro:IPR002579" /db_xref="GeneID:10103600" /translation="MTYPIQKTDAEWQALLREKGAEPGAFEVTRHAATERPFTGKYEG HWADGSYRCICCGAKLFDSETKFDAGCGWPSFWRAVPGAIREIEDRSHGMLRTETVCA QCGAHLGHVFPDGPGPTGLRYCMNSASLDFDPPAP" misc_feature complement(1627797..1628195) /locus_tag="Alide_1555" /note="SelR domain; Region: SelR; cl00369" /db_xref="CDD:185947" gene complement(1628198..1629328) /locus_tag="Alide_1556" /pseudo /db_xref="GeneID:10103601" gene 1629329..1630627 /locus_tag="Alide_1557" /pseudo /db_xref="GeneID:10103602" gene 1630768..1632003 /locus_tag="Alide_1558" /db_xref="GeneID:10103603" CDS 1630768..1632003 /locus_tag="Alide_1558" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2025 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004126202.1" /db_xref="GI:319762265" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10103603" /translation="MKRTIKKIAVSAMLVAAGGAFAQKGETVKIAWLDPLSGLMAAVG TNQLKSFQFISEEFNRKNASGVKFEIIGIDNKLSPQETTSALRSAMDQGARYVVQGNG SGPALAIMDALEKHNARNPGKEVVYLNYAAVDPDLTNSKCSYWHFRLDADTSMKMEAL TTFMKDHAEIKKVYLINQNYSHGHQVSKYAKENLKRKRPDVQIVGDDLHPLAQVRDFS PYIAKIKQSGADTVITGNWGSDLALLIKAANDAGLNNVNFYTYYGGVTGSPTAMGAGA AGRVYMVSYGHLNLPGDIGRIVGEYKKKFNDDMYTGAVYHAFAMLDAGFVKAKSTDPV KVAAVMEGMKFNSFNGEVEMRKTDHQLQQGLFVTRWEKAGGKYPVDAENTGYTFVPVK YYEPYVASTPTSCQMKRPS" sig_peptide 1630768..1630836 /locus_tag="Alide_1558" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.971 at residue 23" misc_feature 1630822..1631916 /locus_tag="Alide_1558" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1630852..1631871 /locus_tag="Alide_1558" /note="Periplasmic solute-binding domain of active transport proteins; Region: PBP1_SBP_like_3; cd06329" /db_xref="CDD:107324" misc_feature order(1631068..1631076,1631158..1631166,1631311..1631313, 1631476..1631478,1631551..1631553) /locus_tag="Alide_1558" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107324" gene 1632077..1633030 /locus_tag="Alide_1559" /db_xref="GeneID:10103604" CDS 1632077..1633030 /locus_tag="Alide_1559" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2024 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004126203.1" /db_xref="GI:319762266" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10103604" /translation="MNLEFFVISLLNGISYGLLLFMLSSGLTLIFSMMGVLNFAHTSF YMLGAYFAYTLSGVIGFWPALVAAPLLIGALGALFERYALRRVHKFGHVPELLVTFGL SYLVLEVVQLVWGRSTVPYGLPAQLQGPLFTLYGTQFPKSRSFIMLVAVLMLLSVWLL LTRTRIGLVIQAALKHPHMVEALGHNVPRVFMLVFGGGCALAGLAGVIGGNTYVTEPA MAASVGSIIFVVVVVGGMGSLAGAFLASLLIGLVQTFAVALDYSLVHAFARLGVQVTE QTFGYPVLRLTISQVAPILPYLFLVLILIFRPKGLLGTRED" misc_feature 1632164..1633012 /locus_tag="Alide_1559" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 1632608..1632664 /locus_tag="Alide_1559" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 1633035..1634369 /locus_tag="Alide_1560" /db_xref="GeneID:10103605" CDS 1633035..1634369 /locus_tag="Alide_1560" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2023 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004126204.1" /db_xref="GI:319762267" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="InterPro:IPR020592" /db_xref="GeneID:10103605" /translation="MRTTSSLSPAAAPDATRYYRFKPLNVGRIVIWSLFAIALIAAPR LFTSGLALTMLSQIGYATIICLSYNILLGQGGMLSFGHAVYTGLGSFITVHAINMAGA GQLPIPLWLMPLVGGLAGMFFAVLLGFVTTKKSGTTFAMITLGIGELVASMALMFPEF FGGEGGITTDRVYGQPFFGITFGPAIQVYYLIAAYCFVCTAAMYAFTGTPLGRILNAV RDNPERVEFIGYNTQRVRYFAFIIAGFFAGIGGALAAINFEIVTGADSVSVVRSGGYL LFTFLGGATFFFGPIIGAVLLVLASVLLSELSKAWLLYLGLVFLFMVMYAPGGIASLI MMNLRLARYGKLRGIVGAYLALGGTALVAVLGAAAMIEMTYHLQLNAALGPRLEFLGA TLDARSVASWFGAGFVLATGLGLFELCRRQFLRQWGEIQEEIEHEIKRGEAA" misc_feature 1633206..1634030 /locus_tag="Alide_1560" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 1633701..1633757 /locus_tag="Alide_1560" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 1634366..1635154 /locus_tag="Alide_1561" /db_xref="GeneID:10103606" CDS 1634366..1635154 /locus_tag="Alide_1561" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_2022 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126205.1" /db_xref="GI:319762268" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10103606" /translation="MTTDHQAAHALELRDLRKSFGKTEIIRGANLTVRSGERVAIIGP NGAGKSTLFNLISGRFAPTSGQVLLHGARIDGKAPFEINRMGLSRSFQITNIFPKLSV FENLRCGVLWSLGYRYAFWRFLSKLQDANERAEQLMEMIKLDKKRDTLAMNLTYAEQR ALEIGITIAGGASVILLDEPTAGMSKSETTRFIHLIKEVTEGRTLLTVEHDMGVVFGL ADKIAVVVYGEVIAFDTPENVRANQRVQEAYLGSVIAAQQEGRH" misc_feature 1634396..1635121 /locus_tag="Alide_1561" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 1634396..1635100 /locus_tag="Alide_1561" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 1634492..1634515 /locus_tag="Alide_1561" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(1634501..1634506,1634510..1634518,1634639..1634641, 1634897..1634902,1634993..1634995) /locus_tag="Alide_1561" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 1634630..1634641 /locus_tag="Alide_1561" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 1634825..1634854 /locus_tag="Alide_1561" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 1634885..1634902 /locus_tag="Alide_1561" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 1634909..1634920 /locus_tag="Alide_1561" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 1634981..1635001 /locus_tag="Alide_1561" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 1635154..1635849 /locus_tag="Alide_1562" /db_xref="GeneID:10103607" CDS 1635154..1635849 /locus_tag="Alide_1562" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_2021 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126206.1" /db_xref="GI:319762269" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103607" /translation="MLKMENLHAYYGKSHVLHGVTFDVQPGEIVALLGRNGSGRSTAA KAIMGLVDWEGTLEWKGRSLRGRKAYEIAHLGLGYVPESRDVFPNLTVHQNLLLGQKG SGRGSRWTFDDMYAMFPRLKERRNIEAGVMSGGEQQMLTLCRTLMGDPDLIIIDEPTE GLAPKIVELVAEYLTRLKERGISVLLIEQKLTIAMTISDRALVMGHGSIVFQGTPDEL RANSYVRKEWLEV" misc_feature 1635154..1635846 /locus_tag="Alide_1562" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 1635157..1635816 /locus_tag="Alide_1562" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 1635253..1635276 /locus_tag="Alide_1562" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(1635262..1635267,1635271..1635279,1635397..1635399, 1635619..1635624,1635718..1635720) /locus_tag="Alide_1562" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 1635388..1635399 /locus_tag="Alide_1562" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 1635547..1635576 /locus_tag="Alide_1562" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 1635607..1635624 /locus_tag="Alide_1562" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 1635631..1635642 /locus_tag="Alide_1562" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 1635706..1635726 /locus_tag="Alide_1562" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 1636044..1638143 /locus_tag="Alide_1563" /db_xref="GeneID:10103608" CDS 1636044..1638143 /locus_tag="Alide_1563" /inference="protein motif:PFAM:PF02737" /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_1684 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase nad-binding protein" /protein_id="YP_004126207.1" /db_xref="GI:319762270" /db_xref="GO:0003824" /db_xref="GO:0016491" /db_xref="InterPro:IPR001753" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="InterPro:IPR018376" /db_xref="GeneID:10103608" /translation="MTAEYQVHGDVAVITLNNPPVNGLGLDTRRGIVDGLERAQADAA VKAIVVTGAGGAFSGGADIKEFGTEKSLQEPNLHSVISAVENCAKPVVAAIHGVCMGG GLELALGCHYRIAAPGCSVALPEVKLGLLPGAGGTQRLPRVVGVEAALNMIVSGEPVK SEFIGAVPGQKLFDRMAASPESLPEEALAFARSVAEARPLPLVRNLPCKHPEGDAYFQ FARNMVKGMAKNFPAPAKCVDAVEAATRRKFADGLQYERELFINLMWTPESRALRHLF FAERAASKIPDVPSDTPKRDIKKVGVIGAGTMGGGISMNFLNAGIPVTILEMKQEALD RGIATIRKNYEAQVKKGKLKEDKYQQRMALLSTTLSYDDLKDCDLIIEAVFEELGVKE AVFRQLDQVAKPGAILASNTSTLDVDRIAAFTRRPQDVVGMHFFSPANVMKLLEVVRG KATAKDVLATVMAIAKKIRKTAVVSGVCDGFIGNRMIERYSQQAGFLLDEGCTPSQVD KAIERFGFAMGPFRMGDLAGNDIGWAIRKRRYVEKPDMKYSKTADLLCEMGRFGQKTG AGWYDYAPGKRDAIPSPMVEKMVEEHRKALGIAPRKISDEEIVQRLVYSLVNEGAKIL EEGIASKAGDIDMVYLTGYGFPIHRGGPMHYASEVGLFNVVQAMKRFARNPLDDARAW EPAPLLARLAAEGKAFA" misc_feature 1636056..1636619 /locus_tag="Alide_1563" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature 1636074..1638062 /locus_tag="Alide_1563" /note="multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154" /db_xref="CDD:183002" misc_feature order(1636104..1636106,1636110..1636112,1636206..1636208, 1636218..1636232,1636335..1636337,1636341..1636349, 1636413..1636418,1636425..1636427) /locus_tag="Alide_1563" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1636224..1636226,1636347..1636349) /locus_tag="Alide_1563" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1636287..1636289,1636311..1636313,1636374..1636385, 1636419..1636430,1636446..1636448,1636452..1636460, 1636464..1636469,1636482..1636487,1636491..1636496, 1636500..1636505,1636512..1636514,1636536..1636538, 1636563..1636565,1636611..1636613) /locus_tag="Alide_1563" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" misc_feature 1636989..1637465 /locus_tag="Alide_1563" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1637481..1637759 /locus_tag="Alide_1563" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" misc_feature 1637865..>1638026 /locus_tag="Alide_1563" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" gene 1638178..1639347 /locus_tag="Alide_1564" /db_xref="GeneID:10103609" CDS 1638178..1639347 /locus_tag="Alide_1564" /EC_number="2.3.1.16" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_2019 acetyl-CoA acetyltransferase; PFAM: Thiolase-like" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004126208.1" /db_xref="GI:319762271" /db_xref="GO:0008113" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020613" /db_xref="InterPro:IPR020615" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10103609" /translation="MTSAVIVSTARTPLAKSWKGSFNMTHGATLGGHAVQHAVQRAGI DGADVDDVIMGCANPEGATGMNIARQIALKAGLPVTTSGMTINRFCSSGLQTIATAAQ RIIAGEGEVYVAGGVESISCVQQEMNQHMLMDHSITKPELYWSMLQTAEMVAKRYGIG RDAMDEYGAASQQKACAAQAAGKFDDEIAPITVTAGIADKTLGLITRQVTVSRDEGTR EGTTKEGISGIRPALPGGLISAGNASQFSDGAGACVVVSEEYAGRKGLKPLGRFLGFA VAGCEPDEMGIGPVFAVPKVLKKLGLTVQDIDLWELNEAFAVQVLYCRDKLGIPADRL NVNGGAIALGHPYGVSGQRLTGHALIEGKRRAARRVCVTMCIGGGMGAAGVFEVL" misc_feature 1638178..1639344 /locus_tag="Alide_1564" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK07108" /db_xref="CDD:180843" misc_feature 1638190..1639341 /locus_tag="Alide_1564" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(1638247..1638249,1638328..1638330,1638373..1638375, 1638382..1638384,1638394..1638396,1638427..1638438, 1638460..1638462,1638481..1638486,1638493..1638495, 1638538..1638540,1639000..1639002,1639006..1639008, 1639012..1639014,1639072..1639074,1639309..1639314) /locus_tag="Alide_1564" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(1638445..1638447,1639210..1639212,1639300..1639302) /locus_tag="Alide_1564" /note="active site" /db_xref="CDD:29411" gene 1639575..1640477 /locus_tag="Alide_1565" /db_xref="GeneID:10103610" CDS 1639575..1640477 /locus_tag="Alide_1565" /inference="protein motif:PFAM:PF00497" /note="KEGG: ctt:CtCNB1_1865 glutamate-binding protein precursor; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_004126209.1" /db_xref="GI:319762272" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10103610" /translation="MSIKSILKSTVVALAIVTGGSLFAQGTPIDAAAFDALVAQGPVA DAATIRSSTWASKIKQAGTLRLGGTQTSNLFSLLNEKDGKIRGFDAGLAQLITRYILG DGAKYRFTQVTSSTREQVLINDQVDMVFATYSITPARAEKISFAGPYYTSQAGVLVKA NNKTIQSYNDLAGKKVATQAGSTGPAILAQYASKAVVQEFQTHQEALDALRQGRVDAY VTDYTLLLNALSLGTGDARLAGAPFGAQDPYGVGLPKGSDGVAFINALLKKLEADGTW AKLWTISIGQRTGSTAVPTPPTLP" sig_peptide 1639575..1639649 /locus_tag="Alide_1565" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.942 at residue 25" misc_feature 1639764..1640411 /locus_tag="Alide_1565" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature 1639776..1640414 /locus_tag="Alide_1565" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(1639791..1639793,1639914..1639916,1639989..1639991, 1640121..1640123,1640235..1640237) /locus_tag="Alide_1565" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1640184..1640186,1640196..1640198,1640214..1640216) /locus_tag="Alide_1565" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 1640313..1640330 /locus_tag="Alide_1565" /note="hinge residues; other site" /db_xref="CDD:29040" gene 1640481..1641143 /locus_tag="Alide_1566" /db_xref="GeneID:10103611" CDS 1640481..1641143 /locus_tag="Alide_1566" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: dac:Daci_4388 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004126210.1" /db_xref="GI:319762273" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10103611" /translation="MGDVSRLLADYGPAFGQALLLTWKLTVVSFVPGFLLGMVVTVLR LLPLPPLRFVLTGYVEIFRNIPSVALLIFIVFALPDLNVVIDYEPSVILTLALVCSAF TADYLRSGINTIPGSQIEAALSLGLRPMRIISAVVLPQALRAVVQPMTSLLIALMLST SLASQVPFPGRELTALVSKIATDSAAGIPAFAVAAAMYVATGLLIAWAGAALEKKVRI LR" misc_feature 1640535..>1640978 /locus_tag="Alide_1566" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1640583..1640588,1640595..1640600,1640613..1640615, 1640643..1640654,1640658..1640687,1640694..1640699, 1640703..1640705,1640769..1640774,1640778..1640780, 1640784..1640786,1640793..1640798,1640802..1640804, 1640814..1640819,1640826..1640828,1640877..1640879, 1640919..1640924,1640931..1640933,1640952..1640963, 1640970..1640975) /locus_tag="Alide_1566" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1640661..1640705,1640952..1640969) /locus_tag="Alide_1566" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1640703..1640705,1640754..1640756,1640970..1640972) /locus_tag="Alide_1566" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1640829..1640867,1640883..1640888,1640898..1640900) /locus_tag="Alide_1566" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1641140..1641940 /locus_tag="Alide_1567" /db_xref="GeneID:10103612" CDS 1641140..1641940 /locus_tag="Alide_1567" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: ctt:CtCNB1_1867 amino acid ABC transporter, permease protein PEB1; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid abc transporter, inner membrane subunit" /protein_id="YP_004126211.1" /db_xref="GI:319762274" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10103612" /translation="MSRPLEDILFGAPSPRAQTAIRVASVTAAAVLLLLAAGIVFRFH AAGQLDARFWEFFAWPTTWAFLGRGLLGTLASAAMAAVIALAFGLVLMMGRLARLRLV RWPSIAVIEFLRGTPTLLLIYVCFLVLPSVGIKLSTYWMLTLPIGLATAAVVAEVYRA GVLAVPRGQTDAARSLGLTEAQVFFLVVFPQALRYIVPALVAQLVIVVKDTTFGYVVT YGELMQNAKVLIANYHALVPVYLVVAALYCLVNYAISRASKRLGGPMH" misc_feature 1641398..1641808 /locus_tag="Alide_1567" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1641398..1641400,1641407..1641412,1641425..1641427, 1641455..1641466,1641470..1641499,1641506..1641511, 1641515..1641517,1641581..1641586,1641590..1641592, 1641596..1641598,1641605..1641610,1641614..1641616, 1641626..1641631,1641638..1641640,1641689..1641691, 1641731..1641736,1641743..1641745,1641764..1641775, 1641782..1641787) /locus_tag="Alide_1567" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1641473..1641517,1641764..1641781) /locus_tag="Alide_1567" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1641515..1641517,1641575..1641577,1641782..1641784) /locus_tag="Alide_1567" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1641641..1641679,1641695..1641700,1641710..1641712) /locus_tag="Alide_1567" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1642373..1644274 /locus_tag="Alide_1568" /db_xref="GeneID:10103613" CDS 1642373..1644274 /locus_tag="Alide_1568" /inference="protein motif:PFAM:PF02770" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2017 acyl-CoA dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004126212.1" /db_xref="GI:319762275" /db_xref="GO:0003995" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="GeneID:10103613" /translation="MSPQGMPPIISSMTTSLRSTLDFLLYDWLRAASLTARPRFADHS RETFDAVLDTCERIAREKYAPFNRTVDTQEPRFDGEKVILPQCTHDARQAYADSGMLG AAQDYELGGMQLPYVVESAANSFFACASISIGSNLLTTGNANAILVHGTPMQQRVFAA NEFNGRWAGTMCLSEPQAGSSLSDIATRAEPDGAGFEADPLGPRYRLRGNKMWISAGD HELTENIVHLVLAKIPGPDGKPVPGVKGISLFIVPKKLVDTEGKLTGERNDVALAGLN HKLGWRGTTNTLLNFGEGRYPVRAGQGGGLDGRGAGAIGYLVGKPGEGLKCIFHMMNE ARISIGMAATMLGLAGYYASLDYARTRLQGRPIGSGGKDASSPQVRLIEHADVKRMLL AQKSYGEGALALNLYCARLVDEGRTGDAGAAADARLLLEVLTPIAKSWPSEFCLEANS LAIQIHGGYGYTRDFPVEQYWRDNRLNMIHEGTHGIQAADLLGRKVVMQGGAGLQLLA RTVAATIAKARQRPGLAAWAGQLEQALRDVIDATRAAWATGNAGEALANAVPYMQAFG HVVLAWMWLDVADSVLAKDASLSIAASAGRMGAARYFFHYELPKTGAWLAVVCTRDAT CADMAEDAF" misc_feature 1642505..1643875 /locus_tag="Alide_1568" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1642523..1643863 /locus_tag="Alide_1568" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1642793..1642795,1642883..1642885,1642889..1642891, 1643009..1643011,1643015..1643017,1643807..1643815, 1643819..1643821,1643825..1643827) /locus_tag="Alide_1568" /note="active site" /db_xref="CDD:173838" misc_feature 1643888..1644262 /locus_tag="Alide_1568" /note="Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806" /db_xref="CDD:193282" gene 1644307..1644810 /locus_tag="Alide_1569" /db_xref="GeneID:10103614" CDS 1644307..1644810 /locus_tag="Alide_1569" /inference="protein motif:PFAM:PF00258" /note="PFAM: flavodoxin/nitric oxide synthase; KEGG: dia:Dtpsy_2016 NAD(P)H dehydrogenase (quinone)" /codon_start=1 /transl_table=11 /product="flavodoxin/nitric oxide synthase" /protein_id="YP_004126213.1" /db_xref="GI:319762276" /db_xref="GO:0010181" /db_xref="GO:0016491" /db_xref="InterPro:IPR008254" /db_xref="GeneID:10103614" /translation="MSTAPKTLLIVYHSLTGGTRQMAEAAQAGAAAEPAVAVRLLHAA QAGPDDVLAAQGYLFATPENLAAMSGQLKDFFDRCYYPVLDRINGRPYASLICAGSDG QNAARQIARIATGWRLKEVAEPLIVCTHAQTPEAILAPKQIGADELERCHALGEALAA GLALGVF" misc_feature <1644451..1644627 /locus_tag="Alide_1569" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 1645051..1645899 /locus_tag="Alide_1570" /db_xref="GeneID:10103615" CDS 1645051..1645899 /locus_tag="Alide_1570" /inference="protein motif:PFAM:PF00892" /note="KEGG: bpt:Bpet3196 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126214.1" /db_xref="GI:319762277" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10103615" /translation="MSFRTSSWASWGAMPMFVLLWGSAAIFTRWALDHGSPSAVLLVR YGAALLAVAPWRRGRWWPAAGTRGTVALAGLLMVALYSVCYFQAMAHGITPGLIATLL GVQPILTLALVKRRFGAARLGGLLLALVGLAMVVWQSLVATRFAAAGLAFALGALACI TAGAIVQKRVRQEPLQVLPLQYAVTLAVCLAFAQVQPLRLDGSAGFWLPALFLGLGIS VLAQWLLYRLIQRGNLVNVTSLFYLVPAVTALLDYAVLGNLLAPMAVAGMLCILAGVI LVHRRA" misc_feature <1645657..1645884 /locus_tag="Alide_1570" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene 1646027..1646102 /locus_tag="Alide_R0023" /note="tRNA-His1" /db_xref="GeneID:10103616" tRNA 1646027..1646102 /locus_tag="Alide_R0023" /product="tRNA-His" /db_xref="GeneID:10103616" gene complement(1646348..1646500) /locus_tag="Alide_1571" /db_xref="GeneID:10103617" CDS complement(1646348..1646500) /locus_tag="Alide_1571" /inference="similar to AA sequence:KEGG:PST_2393" /note="KEGG: psa:PST_2393 NAD-specific glutamate dehydrogenase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126215.1" /db_xref="GI:319762278" /db_xref="GeneID:10103617" /translation="MTDDQYKTIMQALARLAKESAQVRQLILDAIADIGDLQARIEAV NMRFDE" gene complement(1646493..1646921) /locus_tag="Alide_1572" /db_xref="GeneID:10103618" CDS complement(1646493..1646921) /locus_tag="Alide_1572" /inference="similar to AA sequence:KEGG:ELI_12715" /note="KEGG: eli:ELI_12715 phosphoribosylamine--glycine ligase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126216.1" /db_xref="GI:319762279" /db_xref="GeneID:10103618" /translation="MARKSAAALATPTIFTAKRPPPPDGLPPGAAALWVSICAGLDAN YFSTGDMVLLEALVMADHQKRLCDALVLRDGPITGDGAINPAAKLSAQLAGTLAALSG KLRLCKSATTRPESAGLKKALHSGLKPWETSPEMAEYFND" gene complement(1646978..1647124) /locus_tag="Alide_1573" /db_xref="GeneID:10103619" CDS complement(1646978..1647124) /locus_tag="Alide_1573" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126217.1" /db_xref="GI:319762280" /db_xref="GeneID:10103619" /translation="MTCRTCKHRLDVTLWGCWLATGCRIGLVLRTACDEWAPPGGAEK SVPP" gene complement(1647121..1647537) /locus_tag="Alide_1574" /db_xref="GeneID:10103620" CDS complement(1647121..1647537) /locus_tag="Alide_1574" /inference="protein motif:PFAM:PF08774" /note="KEGG: bvi:Bcep1808_6849 hypothetical protein; manually curated; PFAM: VRR-NUC domain-containing protein" /codon_start=1 /transl_table=11 /product="vrr-nuc domain-containing protein" /protein_id="YP_004126218.1" /db_xref="GI:319762281" /db_xref="InterPro:IPR014883" /db_xref="GeneID:10103620" /translation="MSAAPYRGAPIRTCPAPAADTDLLGDEIQTPRTNSRPEAAALVE VLKALRAHPAVAWAERMNTGAAKVGNRFIRFGWPGCPDVLGQLKDGRFLGVEVKAQAG RLRPEQALFLARIRAAGGVAFVARDCRDVLRELRTP" misc_feature complement(1647160..1647384) /locus_tag="Alide_1574" /note="VRR-NUC domain; Region: VRR_NUC; pfam08774" /db_xref="CDD:149740" gene complement(1647578..1649530) /locus_tag="Alide_1575" /db_xref="GeneID:10103621" CDS complement(1647578..1649530) /locus_tag="Alide_1575" /inference="protein motif:PFAM:PF08707" /note="PFAM: Primase 2; KEGG: tin:Tint_1139 primase 2" /codon_start=1 /transl_table=11 /product="primase 2" /protein_id="YP_004126219.1" /db_xref="GI:319762282" /db_xref="InterPro:IPR014819" /db_xref="GeneID:10103621" /translation="MHDTAKAIDALHSIPPDIDRESWVRVAMAANAAGVGFDDFDAWS AGAGNYNAAASRDVWRSIKPGKGVGAGTLFRMAAENGWRMSEGKPQQRAVQAPRKAAE PLRKPAPGMSPAEVWERCEPATAAHGYIAAKAAAGVPLDGLRVVPAGDGLRIAGQNMA GALVVPALAADGALQSLQLIPPPGGGKKLNLPGAAMAGASFTVGEVVPGAPVALCEGV GTAWACWQATGHPAVACFGWGNVGKVAEALRQREPAARLVLVPDVGKEESAAEIAQAL QCAVAYMPQGEVQNFDANDLAQRDGHDVLAALLEDAREPAPPGLPLSVAFADELPEAF TPPDELVEGVLTAGDGSVLYGDSNSGKTFFVIDMAAAVARGARWMGRNTEPGLVVYLA AESPASVRGRLQAYQRHHGVRVPNFAIVQSPIDLFDGDADTEAVIAVVRQLERQRGQK VRLIVGDTLARLSAGANENAGQDMGLVVRRFDRIRTACNAHFLLIHHSGKAAANGARG WSGIRAAVDTEIEVTDSPTGRCAEITKQRDLSTKGERIGFRLDTVTLGTTKWGAAATS CVVVPADAPDKPQGKRVSEVGGAVLEYLRTQPAGKKKREVVEHFQPLYDKSAVYRELK KLVTAGQVLECIGIVTAASEVRNGAN" misc_feature complement(1649300..1649515) /locus_tag="Alide_1575" /note="Primase C terminal 2 (PriCT-2); Region: PriCT_2; pfam08707" /db_xref="CDD:192130" misc_feature complement(1648541..>1648909) /locus_tag="Alide_1575" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4643" /db_xref="CDD:34262" misc_feature complement(<1647983..1648489) /locus_tag="Alide_1575" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(1648445..1648453,1648463..1648468)) /locus_tag="Alide_1575" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature complement(order(1648157..1648162,1648352..1648357, 1648361..1648363,1648445..1648453,1648463..1648465)) /locus_tag="Alide_1575" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature complement(1648160..1648174) /locus_tag="Alide_1575" /note="Walker B motif; other site" /db_xref="CDD:29986" gene complement(1649530..1649817) /locus_tag="Alide_1576" /db_xref="GeneID:10103622" CDS complement(1649530..1649817) /locus_tag="Alide_1576" /inference="similar to AA sequence:KEGG:Deide_01150" /note="KEGG: ddr:Deide_01150 glutaminyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126220.1" /db_xref="GI:319762283" /db_xref="GeneID:10103622" /translation="MKAIEIVCSSFEWWGDRWNSAMPYSIDACTIPDGHQLPNAPVSV YVLTPDPLEAAQLLRLLAAKLEREPQLLKPLNEPGNSPNNPAEADDGGCPF" gene complement(1649814..1650167) /locus_tag="Alide_1577" /db_xref="GeneID:10103623" CDS complement(1649814..1650167) /locus_tag="Alide_1577" /inference="similar to AA sequence:KEGG:Vapar_3800" /note="KEGG: vap:Vapar_3800 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126221.1" /db_xref="GI:319762284" /db_xref="GeneID:10103623" /translation="MNAAPKKKPQTVAADKGLSKEHTPKFTGTDNPRHLRAIAALLRR PMPRENLDTEAGCSNGPELVAELRRRGLEVPCHRINFVDRDGFICRPGVYLLTDTDRR KLHQWMAKRQQKGGA" gene complement(1650248..1650499) /locus_tag="Alide_1578" /db_xref="GeneID:10103624" CDS complement(1650248..1650499) /locus_tag="Alide_1578" /inference="similar to AA sequence:KEGG:Ajs_3336" /note="KEGG: ajs:Ajs_3336 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126222.1" /db_xref="GI:319762285" /db_xref="GeneID:10103624" /translation="MKTTATEYSADTRRAVSEPQQFPPLELESRPRVPTEQAAHYLNR RPQTLRAWACLENGPLRPHRVMGRLAWSVAEIRTVLGVA" gene complement(1650604..1651428) /locus_tag="Alide_1579" /db_xref="GeneID:10103625" CDS complement(1650604..1651428) /locus_tag="Alide_1579" /inference="similar to AA sequence:KEGG:Pnap_0969" /note="KEGG: pna:Pnap_0969 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126223.1" /db_xref="GI:319762286" /db_xref="GeneID:10103625" /translation="MQEISYQYPMFERLQPRSEWRGGRLADTDVLTLEEAAAFASKHA GEEITARDFLRAAGRGEITLRAIVHRAAKVRKHDGGVYCNKGEPNENIVPKGCIANLP LTACQHLANAGRASWRTFDGFEERNGILMRYTKGMLTDDEPDFETVPDDCRVVGYDVH ALADEYCAPEDAPQAATPAPLTDRPSNAPAWTVNKPQRYSGYAAPLHRLLAAAHRDGN PCPTARDVVETWRHNAPAEIAKVLPDGFDYYDAKGDTKTAGLEAIRKAIGRMTSAR" gene complement(1651537..1652871) /locus_tag="Alide_1580" /db_xref="GeneID:10103626" CDS complement(1651537..1652871) /locus_tag="Alide_1580" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: tin:Tint_1145 integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004126224.1" /db_xref="GI:319762287" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10103626" /translation="MAKIAFTAGRVSGFKCPPDKKQAFMWDATAPGLGLRATPAGKPA YVFQSVYQGKDLRITIGSPAAWSIPDAQAKARELQRLIDEGKDPRDLKRDALAAQAEK QAAAAAKVEADKAAALTVGEVWGDYIEKRRPFWGELHYRDHIDKAKAGGLPSGRRGGG KQLTKPGPLAALMPLALKDLDQTTIERWAADEGKTRPSSARLAWRLLTVFLTWCAEQP EYAALLPDKNPAKTKKAREALGKPGTKSDVLQREQLAAWFAAVRQIQNPVIAACLQMM LLTGARPGEVLALRWEDVNTQWKGISIRDKVEGTREIPATPYMLHLLAALPRRNEWVF SSPTSASGCLTEPNNPHTRACAAAGLEGLTLHGLRRSFASLTEWLEVPAGVVAQIQGH KPSATAEKHYKVRPLELLRVHHERIEAWILEQAGIVFDAKAAPGALRVVQAA" misc_feature complement(1651666..1652772) /locus_tag="Alide_1580" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(1651648..1652118) /locus_tag="Alide_1580" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature complement(order(1651666..1651668,1651774..1651782, 1651954..1651956,1652023..1652028)) /locus_tag="Alide_1580" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature complement(order(1651666..1651668,1651696..1651698, 1651765..1651767,1651774..1651776,1651954..1651956, 1652026..1652028)) /locus_tag="Alide_1580" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature complement(order(1651666..1651668,1651696..1651698, 1651765..1651767,1651774..1651776,1652026..1652028)) /locus_tag="Alide_1580" /note="active site" /db_xref="CDD:29495" gene complement(1653351..1654697) /locus_tag="Alide_1581" /db_xref="GeneID:10103627" CDS complement(1653351..1654697) /locus_tag="Alide_1581" /inference="protein motif:TFAM:TIGR01844" /note="KEGG: dia:Dtpsy_1835 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="type i secretion outer membrane protein, tolc family" /protein_id="YP_004126225.1" /db_xref="GI:319762288" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010130" /db_xref="GeneID:10103627" /translation="MLTPRRLLCLSLAVCAALAAAAGPAQAQSLSALVELARGYDAPW QAAQAQLQAAASRAEQARAGLLPSAGLSGGVTYARNDVTRPPLPGVGVNGPTQTLGVQ ASQPLYRPASRIGFEQGQRGIDLASAQRDAAEQDLLVRVSQAYFDVLGAQDTLAFVRA QKAAVAEQLASAKRNFEVGTATVTDEREAQARHDLVSAQEIAAENDLHVKRLALDQIV GRPGTSPLPLAQPVQLPGVRPADVDHWVRTAEDRQPQVRQAALALDVARLETRKAETG HLPTVDLQASYGVQRTPNGTVLMPGIHSRTNVASVGVALNLPLFAGFAVQNRVKETLS LEDKARADLDNARRTAAQAARAAFFNVQSGLSQVGALQAAEASSQSALDANLLGYKVG VRINIDVLNAQSQLYQTKRDLATARYNVLVGTLRLKQAAGTLTADDVAAVDTLLAR" sig_peptide complement(1654614..1654697) /locus_tag="Alide_1581" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 28" misc_feature complement(1654041..>1654421) /locus_tag="Alide_1581" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(1653411..1653971) /locus_tag="Alide_1581" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(1654714..1655052) /locus_tag="Alide_1582" /db_xref="GeneID:10103628" CDS complement(1654714..1655052) /locus_tag="Alide_1582" /inference="protein motif:SMART:SM00450" /note="SMART: Rhodanese domain protein; KEGG: dia:Dtpsy_1836 rhodanese domain protein" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="YP_004126226.1" /db_xref="GI:319762289" /db_xref="InterPro:IPR001763" /db_xref="GeneID:10103628" /translation="MIDHIRPAQLADWIAAHAGDRPLVLDVREPWELQTASVTPRGFE LAAIPMGELATRLSELDPARPVACLCHHGVRSLHVAGFLAHQGFDRVANITGGIDAWS HECDPAVPRY" misc_feature complement(1654735..1655040) /locus_tag="Alide_1582" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125" /db_xref="CDD:193666" misc_feature complement(1654843..1654845) /locus_tag="Alide_1582" /note="active site residue [active]" /db_xref="CDD:29073" gene complement(1655071..1655781) /locus_tag="Alide_1583" /db_xref="GeneID:10103629" CDS complement(1655071..1655781) /locus_tag="Alide_1583" /EC_number="2.1.1.77" /inference="protein motif:PRIAM:2.1.1.77" /note="PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_1837 protein-L-isoaspartate(D-aspartate) O-methyltransferase; SMART: Ribosomal RNA adenine methylase transferase-like" /codon_start=1 /transl_table=11 /product="protein-l-isoaspartate(d-aspartate) o-methyltransferase" /protein_id="YP_004126227.1" /db_xref="GI:319762290" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR020598" /db_xref="GeneID:10103629" /translation="MNMPLNTSADIHDPVEQARYNMVEQQIRPWNVLDAGVLELLSVV RREDFVPPAYQGAAFTDTRIPLNPDAQEAERLGQVMLEPRVDARMLHDLQVQPTDRVL EIGAGSGYMAALLAARAERVVSLEIDPDLAEFARENLRGAGVENAQVRQADGALDPIP DGPFDVIVLSGSVAEVPQKLLALLRDGGRLGAYVGHQPMMRATFVRRSGERFETSQPW DVVVPRLRNFPEPSPFKF" misc_feature complement(<1655248..1655484) /locus_tag="Alide_1583" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1655272..1655274,1655320..1655328, 1655401..1655406,1655452..1655472)) /locus_tag="Alide_1583" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1655832..1656494) /locus_tag="Alide_1584" /db_xref="GeneID:10103630" CDS complement(1655832..1656494) /locus_tag="Alide_1584" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: ajs:Ajs_2029 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein tetr" /protein_id="YP_004126228.1" /db_xref="GI:319762291" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10103630" /translation="MNALPSLPDQPEAPRRGRRKEARPGELLEAALDLFVEKGFAATR VEEVAARAGVSKGTLFLYFPSKEELFKAVVRKNIAGRFAEWDLELEAYEGTSSELVQY CFQTWWERVGSTKAAGLGKLMLSEANNFPELADFYRREVIEPGHRLIRRILQRGMDRG ELRPLDLDHAVYCVLAPLMFLTISQPSPSLCILDPECFSPEKYIRLQADNVLQGLCVR PT" misc_feature complement(1655931..1656458) /locus_tag="Alide_1584" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(1656276..1656416) /locus_tag="Alide_1584" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1656643..1657191 /locus_tag="Alide_1585" /db_xref="GeneID:10103631" CDS 1656643..1657191 /locus_tag="Alide_1585" /EC_number="1.8.4.11" /inference="protein motif:TFAM:TIGR00401" /note="TIGRFAM: peptide methionine sulfoxide reductase; KEGG: ajs:Ajs_2030 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A" /codon_start=1 /transl_table=11 /product="peptide methionine sulfoxide reductase" /protein_id="YP_004126229.1" /db_xref="GI:319762292" /db_xref="GO:0005215" /db_xref="InterPro:IPR002569" /db_xref="GeneID:10103631" /translation="MSSQLQTITLGGGCFWCTEAVFDRVRGVTDVQSGYANGHVAAPT YEQVCSGDTGHAEVVRVTFDPAEIGVREILEIFFAIHDPTTPDRQGNDVGTQYRSGIY YTDPAHRQVAEDLLRELEQGGQWGAPVVTQLQELKSYWPAEDYHQDYFANHPDQGYCA FVVGPKVAKFRKTFARHLKPGA" misc_feature 1656649..1657164 /locus_tag="Alide_1585" /note="Peptide methionine sulfoxide reductase; Region: PMSR; cl00366" /db_xref="CDD:185944" gene 1657216..1657599 /locus_tag="Alide_1586" /db_xref="GeneID:10103632" CDS 1657216..1657599 /locus_tag="Alide_1586" /inference="similar to AA sequence:KEGG:Ajs_2032" /note="KEGG: ajs:Ajs_2032 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126230.1" /db_xref="GI:319762293" /db_xref="GeneID:10103632" /translation="MLRPPHPHALPLLRRRLALAWLLLALVLAPTLGRMHQVLHLPGG AAPQAHAHGAERQAFDALHALFAGHGNADCQVLDQQTLVGAALGHAPALLQAQPQLPP ACAPAPAPGTGGAAPFHARAPPPRA" gene 1657772..1659823 /locus_tag="Alide_1587" /db_xref="GeneID:10103633" CDS 1657772..1659823 /locus_tag="Alide_1587" /inference="protein motif:PFAM:PF00593" /note="PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dia:Dtpsy_1842 TonB-dependent receptor" /codon_start=1 /transl_table=11 /product="tonb-dependent receptor" /protein_id="YP_004126231.1" /db_xref="GI:319762294" /db_xref="GO:0004872" /db_xref="GO:0005215" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR012910" /db_xref="GeneID:10103633" /translation="MNSFASSPRAPGARHPLAWAVLLSLAGAAPAWAQAEASLPEVTV SSSGLQLGASEMTQPVSVLEGDELVRRREATLGETLEGEPGITGSHFGAGASRPVIRG MDGARVRVLSDGSQLQDASTVSPDHAVAAEPLLATQVEVLRGPSALAYGAGAVGGVVN VLDGKVPTAIPQKGYEGSAELRAGSAARETAGAVALTGGAGNVAVHVEAAGRDAGDYR VGSGWAGGSRVPGSFNRTDTGSVGLSWVGSRGYLGMALTRQNAKYGLPGHDHGFEGCH THGDHLHCGSHDGHDHDDHDHGDVPVVDLRSERMDVRGELRDPFAGFAALRLRAGVTD YRHDEVEDGAVSTAFRNKAHDLRVELQHAPVAGLRGMFGVQTAQRRFSAVGEEAYVLP TLTRQWGVFVLEEYRIGNLRLEGALRHDRQTAELEDGTDRRRHGGTSASLGAVWRFAP GYAAGISLTRASRAPTAEELYARGLHMATSTYERGDAGLRAESSRNIDLSLRKTSGDT TFDVTVFRNRIRDYIYGRTLDEHDGLQLLQYAQADATFTGIEGRVRQRITPRLGVTLF GDSVRARLDGGGLLPRIAPMRAGLRLDANWQAWEGQVEWVQVARQDRVAQFETATPGY GMLNMGVAYNGRTGGGMPWQLYLKARNLTGRLAYAHTSFIKDAAPLAGRNVTLGVRVS F" sig_peptide 1657772..1657873 /locus_tag="Alide_1587" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.918) with cleavage site probability 0.915 at residue 34" misc_feature 1657946..1659820 /locus_tag="Alide_1587" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1657946..1657975,1658003..1658032,1658063..1658080, 1658099..1658122,1658168..1658200,1658234..1658248, 1658264..1658275) /locus_tag="Alide_1587" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(1658789..1658791,1658870..1658872) /locus_tag="Alide_1587" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1660326..1661198 /locus_tag="Alide_1588" /db_xref="GeneID:10103634" CDS 1660326..1661198 /locus_tag="Alide_1588" /inference="similar to AA sequence:KEGG:Ajs_2034" /note="KEGG: ajs:Ajs_2034 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126232.1" /db_xref="GI:319762295" /db_xref="GeneID:10103634" /translation="MEFTKQFLRAKNPCANGFRWFVRHVEDGVGYQQALDQLVAAGRV DDALWLLGQFGPTNAVLRADGLEAEAVVFAGTVQVRGGIDVDGVIHAGRSIHAGGGIR AGGAIVAGEDIRAGASIRGQGRLHCGGDLRADWGVEVQESLHCGGELRAAWDVVCGGA LEVGAGAFVGQDLTVHGDMACGKGLRVGGHLSGAGSLRAGQGIVVGGAIGGVMHLEAG WGIKAGESIRANGAIKAGESLCAREDIRAGDGYGIFAGLNVQEPAWEDCAQVWAQRLP AGLRSGVWMGPSAI" gene 1661250..1662470 /locus_tag="Alide_1589" /db_xref="GeneID:10103635" CDS 1661250..1662470 /locus_tag="Alide_1589" /inference="protein motif:TFAM:TIGR00937" /note="KEGG: ajs:Ajs_2035 chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter" /codon_start=1 /transl_table=11 /product="chromate transporter, chromate ion transporter (chr) family" /protein_id="YP_004126233.1" /db_xref="GI:319762296" /db_xref="InterPro:IPR003370" /db_xref="InterPro:IPR014047" /db_xref="GeneID:10103635" /translation="MPPPPSNPETRHASAWAVFAIFLRLGLTSFGGPVAHLGYFRQEF VARRRWLPEDAYADLVALCQFLPGPASSQVGMALGLRRAGWGGALAAWLGFTLPSALA MALLGLGLVAGQGLVPAGVLHGLKVAAVAVVAQAVWGMARGLCRGPARLLLMALACAL ALLWPGVAGQVGAMLLAALAGLALWGRGGAAPVPPVHDEPVGVRARTGALLLAAFAAL LVLLPLAARAWPQPALLLADAFYRAGALVFGGGHVVLPLLQAEVVATGWVAADEFLAG YGLAQAVPGPLFSFAAFLGAAARNGAGGWPGALVCLAAIFLPAFLLVAGALPFWERLR HDVRARAAMSGVNAAVVGLLLAALYRPVWTSAIHAPADLALALAALAALAWGRVPPWL VVPLCGAAGPWLLR" misc_feature 1661289..>1661546 /locus_tag="Alide_1589" /note="Chromate transporter; Region: Chromate_transp; pfam02417" /db_xref="CDD:190304" misc_feature 1661949..1662452 /locus_tag="Alide_1589" /note="Chromate transporter; Region: Chromate_transp; pfam02417" /db_xref="CDD:190304" gene 1662602..1663540 /locus_tag="Alide_1590" /db_xref="GeneID:10103636" CDS 1662602..1663540 /locus_tag="Alide_1590" /inference="protein motif:PFAM:PF03547" /note="PFAM: Auxin Efflux Carrier; KEGG: dia:Dtpsy_1882 auxin efflux carrier" /codon_start=1 /transl_table=11 /product="auxin efflux carrier" /protein_id="YP_004126234.1" /db_xref="GI:319762297" /db_xref="InterPro:IPR004776" /db_xref="GeneID:10103636" /translation="MLSSILVPLVPVILCIGTGYLIARVGWVRAAAVPDLSNIVFLLL TPALLFRTMGQVHLQELDFRPVGLYFASAALLFGATLAWAPFTTATAARALAHTFSNT VMIGVPLISLVYGPAGLVALFTLVSLHSLVLLTAATLVFELAQARAGADDGHSMARTV WQAVRGSIVHPVPLPILAGLLFAQTGLPLPEVVDKPLQMLGAALGPMALLLVGIALAH TRIGAHWRGALRIAAIKNLVMPSTLAALAWALGLSGPAVAVMFTASALPVGANVLYFT QRYGVMQEEVSSAIAISTALALATVPLALAAARLFM" misc_feature 1662602..1663459 /locus_tag="Alide_1590" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene complement(1663533..1664195) /locus_tag="Alide_1591" /db_xref="GeneID:10103637" CDS complement(1663533..1664195) /locus_tag="Alide_1591" /EC_number="1.4.3.5" /inference="protein motif:TFAM:TIGR00558" /note="TIGRFAM: pyridoxamine 5'-phosphate oxidase; KEGG: dia:Dtpsy_1881 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase" /protein_id="YP_004126235.1" /db_xref="GI:319762298" /db_xref="GO:0004733" /db_xref="InterPro:IPR000659" /db_xref="InterPro:IPR011576" /db_xref="GeneID:10103637" /translation="MSHSPLSSSIADLRKSYERAELSEDASHADPLQQFDQWLQEAVA AQVPEPNAMTVATVGSDLRPSTRVVLIKGYDARGIVWYTNYDSRKGRQLAGNPYAALQ FHWVELERVVRIEGIVEKVSDEESDAYFHSRPLDSRIGAWASPQSQVIASRGVLVANA ARYGAQFLLKPPAPAALGRLPPQARAVGVLAGPQEPAARPAALPAGRRRLGARAPGPL IT" misc_feature complement(1663821..1664075) /locus_tag="Alide_1591" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" gene complement(1664212..1664805) /locus_tag="Alide_1592" /db_xref="GeneID:10103638" CDS complement(1664212..1664805) /locus_tag="Alide_1592" /inference="protein motif:PFAM:PF04752" /note="PFAM: ChaC family protein; KEGG: dia:Dtpsy_1879 ChaC family protein" /codon_start=1 /transl_table=11 /product="chac family protein" /protein_id="YP_004126236.1" /db_xref="GI:319762299" /db_xref="InterPro:IPR006840" /db_xref="GeneID:10103638" /translation="MPALAAPLRDPAPMLERTLEEWGGACDLWIFGYGSLIWRPDFPF AERRAAKVHGWHRALKMWSRVNRGTPECPGLVFGMLSGGSCRGMVFRVEQAHARQVMV NLWQREMVLGVYDPRWLDCRTPAGPVRALAFTLSRKSPSHTGVLADEEYRRIFAQASG IYGTTRDYAEATHAELLRLGIHDRALARLLALSRPHA" misc_feature complement(1664401..1664718) /locus_tag="Alide_1592" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cd06661" /db_xref="CDD:119400" misc_feature complement(order(1664401..1664403,1664464..1664466, 1664482..1664487,1664698..1664703,1664707..1664709, 1664716..1664718)) /locus_tag="Alide_1592" /note="putative active site pocket [active]" /db_xref="CDD:119400" misc_feature complement(order(1664404..1664406,1664413..1664415, 1664446..1664448,1664452..1664466,1664563..1664565, 1664575..1664580)) /locus_tag="Alide_1592" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119400" misc_feature complement(1664482..1664484) /locus_tag="Alide_1592" /note="putative catalytic residue [active]" /db_xref="CDD:119400" gene 1664868..1665389 /locus_tag="Alide_1593" /db_xref="GeneID:10103639" CDS 1664868..1665389 /locus_tag="Alide_1593" /inference="protein motif:PFAM:PF00691" /note="PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein" /codon_start=1 /transl_table=11 /product="ompa/motb domain protein" /protein_id="YP_004126237.1" /db_xref="GI:319762300" /db_xref="InterPro:IPR006664" /db_xref="InterPro:IPR006665" /db_xref="GeneID:10103639" /translation="MSFSSSDDDSQQRFALGFLFALIALVVSTVVGVVVYKRGIAHAP AKAPAAAVVTTAVEVVAEDAASVVVEGGVVKFFFASGKADLAAGASEALAEAVKGVLE GGKTAVVSGFHDATGDAAVNAELSKQRALAVRDALKALGVPEEKVELKKPEVTQGSGS NAEARRVEVMLAP" misc_feature <1665189..1665380 /locus_tag="Alide_1593" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cl02931" /db_xref="CDD:194484" misc_feature order(1665204..1665209,1665216..1665218,1665228..1665233, 1665240..1665242,1665360..1665362) /locus_tag="Alide_1593" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene complement(1665438..1666484) /locus_tag="Alide_1594" /db_xref="GeneID:10103640" CDS complement(1665438..1666484) /locus_tag="Alide_1594" /inference="protein motif:PFAM:PF01904" /note="PFAM: protein of unknown function DUF72; KEGG: dia:Dtpsy_1999 protein of unknown function DUF72" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126238.1" /db_xref="GI:319762301" /db_xref="InterPro:IPR002763" /db_xref="GeneID:10103640" /translation="MQDDLFGGPPPPSAPAAPDKAPARRTGVHPATWGGDLHALAARL PPRLRLGTSSWSYPGWQGLVWESAHSEQTLAKKGLPVYARHPLLRTVSIDRSFYRPLT ASDYARYAAQVPGDFRFVVKAPSLVADALVRSEDGRAREPNPAFLNPQLAAQEFVAPA LEGLGARTGALVFQLSPLPWRLLDRLPEVLERLRTLLQAQPPLGQPDAVLAVEVRDPE WLAPEHMGHFADVLRSSGATYCLGLHARLPPLAEQLPLLRLLWPGPLVCRWNLHPVHG PHGYEDAQKLYAPYDRIHHPDPDTHALLARTLAGVCGRGQNAYVTISNHAEGCAPLTV RRLAEQVAALGAAQ" misc_feature complement(1665462..1666280) /locus_tag="Alide_1594" /note="Protein of unknown function DUF72; Region: DUF72; cl00777" /db_xref="CDD:186183" gene complement(1666485..1666889) /locus_tag="Alide_1595" /db_xref="GeneID:10103641" CDS complement(1666485..1666889) /locus_tag="Alide_1595" /inference="similar to AA sequence:KEGG:Dtpsy_1998" /note="KEGG: dia:Dtpsy_1998 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126239.1" /db_xref="GI:319762302" /db_xref="GeneID:10103641" /translation="MSAQPFPIRTECPPGSCVCERDALMRAPGGDVRILRLTRDEEKR LVQRLENLTSLADLRHMEQRLFEQLGVRLSITASPHEVRTLRGIAILVHAQPGLCRKT RKAIPEAIRKSMERRPEIAYGLLDEGGLFEGM" gene 1666982..1669366 /locus_tag="Alide_1596" /db_xref="GeneID:10103642" CDS 1666982..1669366 /locus_tag="Alide_1596" /inference="protein motif:PFAM:PF09371" /note="KEGG: ajs:Ajs_1707 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold" /codon_start=1 /transl_table=11 /product="tex-like protein" /protein_id="YP_004126240.1" /db_xref="GI:319762303" /db_xref="GO:0003723" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR006641" /db_xref="InterPro:IPR018974" /db_xref="GeneID:10103642" /translation="MQQIVRQLAAEIKITETQVLAAVELLDGGATVPFIARYRKEATG GLDDVQLRELEARLSYLRELQERRVAVLKAIDEQGKLTAQLRAQIAAVPTKQELEDIY LPFKQKRRTKGQIAREFGIEPLADKLLADPTLDPHEEAKAFCQPATTLDDGKPGPDFS TAFAVLDGVRDILSERWAEDAQLVQSLREWLWAEGLLRSKKVDGKNENDPEVAKFRDY FDYDEPIGRVPSHRALAVFRGRALEILEARLVQPQEPEPGQPSLAEGRIALHLGWSHQ GRKCDDLLRKCVAWTWRVKLSLSTERDLFSRLREEAEKVAIKVFADNLRDLLLAAPAG PKAVMGLDPGIRTGVKVAVVDATGKLVETATVYPHEPRRDWDGSLAVLGRLCMKHGVQ LIAIGNGTASRETDKLAAELIKLMQKQAPAQAGQAPIAIEKVVVSEAGASVYSASEYA SQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKSIGVGQYQHDVNQGELARTLGAVV EDCVNSVGVDLNTASVPLLSRVSGLSGSVAKAVVRWREQHGAFRNRKQLMEVGGLGAK TFEQAAGFLRIRGGDNPLDMTGVHPETYPVVEQIIVKTGRPVQELMGRAEVLKALKPE QFASERFGAITVRDILGELEKPGRDPRPDFKVARFNEGVEEITDLKEGMVLEGTVSNV AQFGAFVDLGVHQDGLVHVSQLAHKFVSDAREVVKTGDIVKVKVLEVDVARGRISLSM KLDAAPARQGHERGPRENRFEGAGRGYAQPQRRGNDPAPQSAMASAFAKLQGRR" misc_feature 1666982..1669363 /locus_tag="Alide_1596" /note="Transcriptional accessory protein [Transcription]; Region: Tex; COG2183" /db_xref="CDD:32366" misc_feature 1667003..1667605 /locus_tag="Alide_1596" /note="Tex-like protein N-terminal domain; Region: Tex_N; pfam09371" /db_xref="CDD:150144" misc_feature 1667987..1668316 /locus_tag="Alide_1596" /note="Uncharacterised protein family (UPF0081); Region: UPF0081; cl00525" /db_xref="CDD:186059" misc_feature 1668995..1669198 /locus_tag="Alide_1596" /note="S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin...; Region: S1_Tex; cd05685" /db_xref="CDD:88440" misc_feature order(1669019..1669021,1669043..1669045,1669073..1669075, 1669079..1669081) /locus_tag="Alide_1596" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88440" gene complement(1669382..1670356) /locus_tag="Alide_1597" /db_xref="GeneID:10103643" CDS complement(1669382..1670356) /locus_tag="Alide_1597" /inference="similar to AA sequence:KEGG:BB0544" /note="KEGG: bbr:BB0544 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126241.1" /db_xref="GI:319762304" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10103643" /translation="MIPLTRRRLLQAIAAAGTMPALHAGAQATYPGKPIRLIVPAAAG GATDIIGRLVAHQASLALPQPMVVENVAGGGGVIGTQVVARASGDGHTLLMGAINHTI NASLVGKLPYDSVKDFTFISHLVSIPNVLVVHPSLPVTTLAEFIQYARTHDTLVFASS GNGTSQHLSAEMFRMATGVKYQHVPYKGAAPATNDLLGGHVHLMFDNLPAAAPNIRAG KLRALAVTSARRNAAFPDLPAIAETVPGFDVRSWFGLMGPAGMPRPVVDKLHAEMVRI FTQPEVLRRIADMGAEAQVTDPAAFNAYVHQEMERWAKVVKASGATVQ" sig_peptide complement(1670282..1670356) /locus_tag="Alide_1597" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.820 at residue 25" misc_feature complement(1669397..1670341) /locus_tag="Alide_1597" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1669394..1670209) /locus_tag="Alide_1597" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1670379..1670777) /locus_tag="Alide_1598" /db_xref="GeneID:10103644" CDS complement(1670379..1670777) /locus_tag="Alide_1598" /inference="protein motif:PFAM:PF01796" /note="PFAM: protein of unknown function DUF35; KEGG: bbr:BB0545 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126242.1" /db_xref="GI:319762305" /db_xref="InterPro:IPR002878" /db_xref="GeneID:10103644" /translation="MNNAHTLAGDPYVAAFPENLPFWEAAARGRLLLPRCADCGQAHW HPRAHCPYCRSEAVRWEEASGRGTIHACTVIRRPDSHCVLAYVQVEEGPLMMTNIIDA APEDLHIGMAVRCDFRATAEGRHAPVFRPA" misc_feature complement(1670601..1670711) /locus_tag="Alide_1598" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" misc_feature complement(1670424..1670600) /locus_tag="Alide_1598" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene complement(1670774..1671955) /locus_tag="Alide_1599" /db_xref="GeneID:10103645" CDS complement(1670774..1671955) /locus_tag="Alide_1599" /inference="similar to AA sequence:KEGG:BB0546" /note="KEGG: bbr:BB0546 acetyl-CoA acetyltransferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004126243.1" /db_xref="GI:319762306" /db_xref="InterPro:IPR002155" /db_xref="GeneID:10103645" /translation="MNAMNFHHPAFIVGAFEHPTRHAPDKSVAQLHAECARGALADAG LGMDDVDGYFCAADAPGGIPALMADYLNLRLRHIDGTESGGCSYIAHVGHAATAIAQG RCSVALITLAGKPRSSGQATGTEIRKIPPERPAAPFEQPYAWTVAGLYGILASRHMYE YGTTMEQLAWVKVAASHHAQHNPHALLRKVFTTDDVLASPLVADPLRRLDCCVITDGG GALVMVHPSIARSLKRPMVGVRGFAETIRTNEAGRLDLLQTGAAVTGPRAFENARLTP ADVKYASVYDNFTIMVAMQLEDLGFCAKGDGGRFVADGNLISGVGRLPWNTDGGGLCN NHPQNRGGITKVIEAVRQLRGEAHPAVQVPNCDIALASGPGLVMGAGHAHATVLLERL Q" misc_feature complement(1670783..1671946) /locus_tag="Alide_1599" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK08142" /db_xref="CDD:181251" misc_feature complement(1670792..1671919) /locus_tag="Alide_1599" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature complement(order(1670948..1670950,1671101..1671103, 1671701..1671703)) /locus_tag="Alide_1599" /note="active site" /db_xref="CDD:29416" gene complement(1671952..1672935) /locus_tag="Alide_1600" /db_xref="GeneID:10103646" CDS complement(1671952..1672935) /locus_tag="Alide_1600" /inference="similar to AA sequence:KEGG:Reut_A0842" /note="KEGG: reu:Reut_A0842 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126244.1" /db_xref="GI:319762307" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR020610" /db_xref="GeneID:10103646" /translation="MQWISLAAAVGLCVAQGAASAQAWPAKPVKMIIPLAAGGATDKA ARLVAQRLSVALGQQVVAENVTGASGSIALQRLAQAEPDGYTLGATANSLHTIAPHMG KLPYDAFSAFSFVGTYAAFDYVLITAPDAPYKNVAELVERARKNPGTVSYGSSGVGTG NHLAAALFGQLAQADLNGIPYRGGSPAILDVMAGRTDFMFDVVGGAIAQIEGGKVKAL GVSGVKRHALLPGVPPIADSVPGYESGGWFALIGPARLPPAIVHRLNTELNRIQASAE FREQLAALGYEPLPGTPADVEKRLKAETLKWGEVIGKLPCTAVPERCATTQ" sig_peptide complement(1672870..1672935) /locus_tag="Alide_1600" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.483 at residue 22" misc_feature complement(1671994..1672803) /locus_tag="Alide_1600" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1672973..1673773) /locus_tag="Alide_1601" /db_xref="GeneID:10103647" CDS complement(1672973..1673773) /locus_tag="Alide_1601" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpd:RPD_4223 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004126245.1" /db_xref="GI:319762308" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10103647" /translation="MTERLKGKTALVLGAGCVGEGWGNGNATAVTFAREGANVVCADI NEGSAAQTAELVRREGGKAVHVRADVASLEQLEHAAAVALEAYGRIDVLHNNAGISVR GGTLDSSEESWDRVYAVNARGAFLACKAVIPHMQRQGGGSIIHVSSIAAVGWTGHALL SYQSSKAALNQLTRMVAVQHAAEGIRCNCIMPGLIDSPRIYQTILPVFGGDVERMRAS RSQAVPMKRMGEAWDIANAALFFAADESKYVTGVVMAVDGGITCSLPH" misc_feature complement(1672997..1673764) /locus_tag="Alide_1601" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(1673003..1673746) /locus_tag="Alide_1601" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature complement(order(1673180..1673185,1673189..1673200, 1673276..1673278,1673288..1673290,1673330..1673338, 1673417..1673419,1673480..1673488,1673564..1673572, 1673639..1673647,1673702..1673707,1673723..1673728, 1673732..1673734)) /locus_tag="Alide_1601" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature complement(order(1673276..1673278,1673288..1673290, 1673330..1673332,1673414..1673416)) /locus_tag="Alide_1601" /note="active site" /db_xref="CDD:187544" gene complement(1673800..1675356) /locus_tag="Alide_1602" /db_xref="GeneID:10103648" CDS complement(1673800..1675356) /locus_tag="Alide_1602" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB0547 ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004126246.1" /db_xref="GI:319762309" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10103648" /translation="MQLIDLFDRGATYGAESPCLIEPGGSTWSYAQVQDLSHRIANGL QTCGVERGSKVGLLSANHVLTFAAILGIVRSNGIWLPVNARNAPEENVNILVRGGCEF LFVHSQFAAQLPQLREAMPALKGIVCIDAELPGVPGLQTWAGEQPAQPFRSEDRTDDV VAIRGTGGTTGLPKGVLISHRNYLAMYANWYAAMPVRERPVHLVVAPLTHAAGSLCFA TCGYGGANIILPSAEPAAIIEAIERYKVTQLFLPPTVIYKLLAHPDVRRGDYRSLRYF VYSAAPMSVDKLREALQVFGPVMVQAYGQAEAPFACTIMTADEHAHILGDPALGHRLS SCGRASPFVRVGVMDAEGRLLPPGERGEIVVQGDLVMKGYYQDPEKTAETLRHGWLHT GDVGYRDEDGYFYIVDRMKDLIVSGGFNISPSEVEQVLWAHPAVSECAVIGVPDSHWG ESVKAIVELKPGVPWDENAALAYCRDRLGGMKAPKSIEVWPQLPRSTVGKVLKREIRE RYWAGQSRRV" misc_feature complement(1673803..1675287) /locus_tag="Alide_1602" /note="acyl-CoA synthetase; Validated; Region: PRK06188" /db_xref="CDD:180454" misc_feature complement(1673827..1675275) /locus_tag="Alide_1602" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(1675362..1676354) /locus_tag="Alide_1603" /db_xref="GeneID:10103649" CDS complement(1675362..1676354) /locus_tag="Alide_1603" /inference="similar to AA sequence:KEGG:BB0564" /note="KEGG: bbr:BB0564 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126247.1" /db_xref="GI:319762310" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103649" /translation="MEPANLLPSRRRAVLQALAALALPAGLTVRAAQWPERSITFVQP YAPGTATDASSRYIAQQISERWKVPTVMEHKVGANSIIGTEYVARAAPDGYTFLITST GFFTNEAMVSKLPYHPLDSFVPVAKVGGVQLLLCVPANSRLRSAKELVDFARANPGRL TYASGGNGSSQHLSGAQLGTLSNTQLMHVPYKAQVPAAVATASGEVDFSFIAIATAKP LLAADKIRVLAVSGSSRSASFPEMPTVAEAGVPGFEWVANTFFLAPANTPRDIVRKLS GVLGEVAGSDGYREFTKGIGMDADFMGEAEWSRTIAAERQRYLQVVRASGAKAE" sig_peptide complement(1676259..1676354) /locus_tag="Alide_1603" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.900) with cleavage site probability 0.876 at residue 32" misc_feature complement(1675377..1676264) /locus_tag="Alide_1603" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1675374..1676189) /locus_tag="Alide_1603" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1676445..1677452 /locus_tag="Alide_1604" /db_xref="GeneID:10103650" CDS 1676445..1677452 /locus_tag="Alide_1604" /inference="protein motif:PFAM:PF00356" /note="KEGG: bbr:BB0548 LacI family regulatory protein; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI" /codon_start=1 /transl_table=11 /product="regulatory protein laci" /protein_id="YP_004126248.1" /db_xref="GI:319762311" /db_xref="GO:0003700" /db_xref="InterPro:IPR000843" /db_xref="InterPro:IPR001761" /db_xref="GeneID:10103650" /translation="MTERVSIRDVAAAAEVSIGTVSRVLNGSGYASQAVRQRVQQAIA RLGYEPDFTARHLRTGHSRTIGYLLPNIANPFLAIHLAEVEKLAQGAGYSLFIGSSER PARDKELVAFFENRRLEGIIASPSHEYEDPKSSPFGTTSLPTVIVDRDLGPGFDSVLV DHCQGMRKVMEYLLALGHRRVALFASGPRLRPGREKLRGYRAALEDAGFAFDERLVHL SESWLESSREPMRRMLRLEAPPTAIIAVGTQLLSGAVHVVREAGMDIPRDMSVVGIGT LETLELMYPPVTALRYNFHQSASAAVQLILQRIEKVAPPHARTVVIQSDLILGASCGA V" misc_feature 1676457..1677449 /locus_tag="Alide_1604" /note="Transcriptional regulators [Transcription]; Region: PurR; COG1609" /db_xref="CDD:31797" misc_feature 1676466..1676621 /locus_tag="Alide_1604" /note="Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392" /db_xref="CDD:143331" misc_feature order(1676466..1676468,1676490..1676504,1676508..1676513, 1676520..1676522,1676535..1676540,1676547..1676549, 1676586..1676588,1676595..1676597,1676604..1676609, 1676613..1676618) /locus_tag="Alide_1604" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature 1676586..1676615 /locus_tag="Alide_1604" /note="domain linker motif; other site" /db_xref="CDD:143331" misc_feature 1676634..1677440 /locus_tag="Alide_1604" /note="Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_LacI_like_5; cd06281" /db_xref="CDD:107276" misc_feature order(1676634..1676636,1676673..1676681,1676688..1676693, 1676697..1676702,1676721..1676735,1676739..1676741, 1676769..1676771,1676778..1676780,1676787..1676795, 1677114..1677116,1677198..1677200,1677210..1677212, 1677219..1677224) /locus_tag="Alide_1604" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:107276" misc_feature order(1676670..1676675,1676682..1676684,1676814..1676816, 1676886..1676888,1676922..1676924,1677030..1677032, 1677102..1677104,1677267..1677269,1677318..1677320) /locus_tag="Alide_1604" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107276" gene complement(1677543..1678394) /locus_tag="Alide_1605" /db_xref="GeneID:10103651" CDS complement(1677543..1678394) /locus_tag="Alide_1605" /inference="protein motif:PFAM:PF00285" /note="PFAM: Citrate synthase; KEGG: rme:Rmet_4144 citrate synthase" /codon_start=1 /transl_table=11 /product="citrate synthase" /protein_id="YP_004126249.1" /db_xref="GI:319762312" /db_xref="GO:0003700" /db_xref="InterPro:IPR002020" /db_xref="GeneID:10103651" /translation="MSTTPKDTEQVRQAVRDWWRTSIIDMAPGSIRYSGYPIQELIGR VGFAQMIWLMTRGELPSEGEARLLDAALVAAVDHGPQAPSIAIARMAATCGVGLNNAM ASAVNVLGDVHGGAGEQAVEMYACIARRLDRGEDLRAAASAGLDEAIDRHGKFVSGFG HRFHPIDPRAPRLLELVDEAARAGVVGGRFARIGRAVEEELAARKNGKRIPMNIDGAT AVIYAELGFPAALARGLFCLSRSVGILAHAWEQTRQGGRNKGPIPREYIWSYDGPAQR AVPGSQT" misc_feature complement(1677597..1678292) /locus_tag="Alide_1605" /note="Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA)...; Region: CCL_ACL-C; cd06100" /db_xref="CDD:99854" misc_feature complement(order(1677612..1677614,1677621..1677623, 1677675..1677677,1677750..1677752,1677756..1677758, 1677765..1677767,1677888..1677890,1677909..1677932, 1678038..1678040,1678047..1678049,1678056..1678064, 1678149..1678151,1678161..1678163)) /locus_tag="Alide_1605" /note="active site" /db_xref="CDD:99854" misc_feature complement(order(1677612..1677614,1677675..1677677, 1677888..1677890,1677909..1677914,1678056..1678058, 1678149..1678151,1678161..1678163)) /locus_tag="Alide_1605" /note="oxalacetate binding site [chemical binding]; other site" /db_xref="CDD:99854" misc_feature complement(order(1677675..1677677,1677756..1677758, 1677888..1677890,1677909..1677923,1677927..1677932, 1678056..1678061,1678149..1678151,1678161..1678163)) /locus_tag="Alide_1605" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99854" misc_feature complement(order(1677621..1677623,1677750..1677752, 1677756..1677758,1677765..1677767,1677909..1677932, 1678038..1678040,1678047..1678049,1678056..1678064)) /locus_tag="Alide_1605" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99854" misc_feature complement(order(1677750..1677752,1677912..1677914, 1678056..1678058)) /locus_tag="Alide_1605" /note="catalytic triad [active]" /db_xref="CDD:99854" gene complement(1678391..1679593) /locus_tag="Alide_1606" /db_xref="GeneID:10103652" CDS complement(1678391..1679593) /locus_tag="Alide_1606" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B4958 L-carnitine dehydratase/bile acid-inducible protein F" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004126250.1" /db_xref="GI:319762313" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10103652" /translation="MPIKPLQGVRVLDLTNVLAGPFCCHQLAHMGADVIKVEARLGGD LARQLGADVELNRRNMGVSFLAQNPGKRSITLDLKKESAKAVFRRLVRTADVVVENFR PGVMDRLGLGYAELLQENPGLVYCAISGFGQTGPLRDFPAYDQIIQGMSGVMGITGDQ ESAPLRVGYPIADTIGGITAAFAVASALASPKRNKGVFIDVSMLEATMATMGWAVSNH LVAGRAPQPMGNDNVTASPSGTFRTGDGLLNIAANKQEQFEKVCDVLGRPEWKQDPRF AERHARLGNRAELKRLMETELAARSADAWWQLLNAAGVPSGPVYSVPQALDHPQISTR GMVATFKDAPGVGRDIRLVRTGFKLNGEAPSVDAPPPRLGEHTDAILAELGYAEEEIA SFKQQEIV" misc_feature complement(1678394..1679584) /locus_tag="Alide_1606" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1679596..1680561) /locus_tag="Alide_1607" /db_xref="GeneID:10103653" CDS complement(1679596..1680561) /locus_tag="Alide_1607" /inference="similar to AA sequence:KEGG:Aave_3937" /note="KEGG: aav:Aave_3937 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126251.1" /db_xref="GI:319762314" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103653" /translation="MPIDNMRRHMLLAGAASMLGTPAFAQGKPITIIVPYSPGGTADL STRVIAQFAAPSVGSPMVVDNRTGGGGLIGWGLASRAAPDGNTLLTVELAYAIAAGLL PNMPFDPLKAFSQITTAVKVPHVLVVNPNVPAKTVQEFIALAKAQPGKLNYGSGGNGT NTHLAGELFKSVTGTDIVHVPYKGAGAVLADLMGNQVQALITAVPTALSHIRSGKLRA LMVTGAQRNALLPDVPSAKEAGIPAMDIDYWVGLGAPAGTPQPVIDKLGKAINAALAQ PEARKKFAEMGLTVVGSTPEQATQFVHSEIQRWSAVIKQAGIKPE" sig_peptide complement(1680484..1680561) /locus_tag="Alide_1607" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.979 at residue 26" misc_feature complement(1679608..1680531) /locus_tag="Alide_1607" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1679608..1680423) /locus_tag="Alide_1607" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1680594..1681553) /locus_tag="Alide_1608" /db_xref="GeneID:10103654" CDS complement(1680594..1681553) /locus_tag="Alide_1608" /inference="similar to AA sequence:KEGG:Rmet_4146" /note="KEGG: rme:Rmet_4146 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004126252.1" /db_xref="GI:319762315" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103654" /translation="MVDTPRRLLLAAICALPLASMAQGGYPSQPIKLIVPFPPAGGTD VLTRLVANEVALKEKWTFVVDNKPGAGGNIGLDAVAKARKDGYTLGTGQTANLAINPT LYTKMPFDAGKDFAPVVLLASQPVVLVVRPDSPIKTLADVKTQAKQLTMASAGTGTVG HVGGEMFAKRAGIKVMHVPYKGAGPATTDLLGGVTDMYFATPPSVISLIKSGKLRAVA VTSPKRLSVLPDVPTVAESGYPGFEAEDWKAMVAPAGTPPEAIAQINKAVNAALARPE IAERLRDEGSVARGGTPAELGAFLKSEQARWGTAVRESGAKLD" sig_peptide complement(1681485..1681553) /locus_tag="Alide_1608" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.987 at residue 23" misc_feature complement(1680609..1681496) /locus_tag="Alide_1608" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1680606..1681412) /locus_tag="Alide_1608" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1681604..1682614) /locus_tag="Alide_1609" /db_xref="GeneID:10103655" CDS complement(1681604..1682614) /locus_tag="Alide_1609" /inference="protein motif:PFAM:PF04909" /note="PFAM: amidohydrolase 2; KEGG: bam:Bamb_4804 amidohydrolase 2" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004126253.1" /db_xref="GI:319762316" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10103655" /translation="MSSNYLAVRPDWLALGQEEILEPDLPIVDVHHHFFDRPGWTYLA SEYLADVRSGHKIHSTVYMQAQTRYRREGPANLRAAGETEYVAHAADSLAATGVNVAA GIVGHADLRAGARVREVLQAHIEAGRGRFRGIRHLTTWDADASLVNPLSAVPARLMLD GAYREGVAQLAPLGLSYDAWLFFHQLPELQDLAEAFPDTTVVVNHCGGIVRIGPYAQC RDEVFRQWARAMRELARLPNVYVKLGGLGMRINGFDFEKSETPPSSQQLAAAWRPWME TCIEAFGAERCMFESNFPVDKGSYSYATLWNAFKRLTSGASAQERRALFEGTATRVYR IA" misc_feature complement(1681607..1682557) /locus_tag="Alide_1609" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature complement(1681610..1682533) /locus_tag="Alide_1609" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" gene 1682763..1683473 /locus_tag="Alide_1610" /db_xref="GeneID:10103656" CDS 1682763..1683473 /locus_tag="Alide_1610" /inference="protein motif:PFAM:PF09339" /note="KEGG: cti:pRALTA_0434 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="regulatory protein iclr" /protein_id="YP_004126254.1" /db_xref="GI:319762317" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10103656" /translation="MPKKSATTSLADEQAAPGGAAAVDKAVTVLAAFRAGDRALSVTE LAERTRLYKSTVLRLLASLAHGRLVQRTADGQWSLGPEVARLASIYSASFSLEDLVMP EMRALMERTQESVAFHVRQGDQRLVLYRVDSPQLLRDHVRAGDLLPLDRGAGGRVLMA FAGAKGRMYDKVRRDGFVMVSGDRVPGLVGISAPVWNAARELVGALTLTAPEQRVRPS FADELRRSAQALTGLLGG" misc_feature 1682844..1683470 /locus_tag="Alide_1610" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 1682847..1683089 /locus_tag="Alide_1610" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1683201..1683455 /locus_tag="Alide_1610" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 1683529..1684362 /locus_tag="Alide_1611" /db_xref="GeneID:10103657" CDS 1683529..1684362 /locus_tag="Alide_1611" /inference="protein motif:PFAM:PF08668" /note="PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 signal transduction protein" /codon_start=1 /transl_table=11 /product="metal-dependent hydrolase hdod" /protein_id="YP_004126255.1" /db_xref="GI:319762318" /db_xref="InterPro:IPR013976" /db_xref="GeneID:10103657" /translation="MQSMELNALLEQPFVLPSLPRAVALLMNELGSAEPSLRRLNQLF GTDPALAARLLQEANSAPFAAQRQVSGIPEALALLGVDRLRTLVAAAPPGTTSRSVPG VNLQHFWRYSLYTAKLARALAGLVHHNQIAAYTAGLLHGVGELALHMADAARMQSVNA LVGPLDLRRAKLEQHLLGYCYAQVSAGLAWRWQLPDVVVDALRHHPAPFDNDVCEPLA GVLHLAAWRARAREAGLGARELAVTFPGEVGVALGLDIDMVLQQDPIDWKARSDAGDY V" misc_feature 1683574..1684152 /locus_tag="Alide_1611" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene 1684458..1685333 /locus_tag="Alide_1612" /db_xref="GeneID:10103658" CDS 1684458..1685333 /locus_tag="Alide_1612" /inference="protein motif:PFAM:PF01557" /note="PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_1712 hydratase/decarboxylase" /codon_start=1 /transl_table=11 /product="fumarylacetoacetate (faa) hydrolase" /protein_id="YP_004126256.1" /db_xref="GI:319762319" /db_xref="GO:0003824" /db_xref="InterPro:IPR002529" /db_xref="GeneID:10103658" /translation="MTMKQSFTALGAGLALALAMGAQAQCLSDGEVGVLASHYSAKTP APNFPALSDADGACTRAKFNVLLASSLGKVVGYKAGLTNPAVQKRFRTDKPVWGKLYE GMVQPSGTAVPAAFGARPLYEADMLVRVKDAAINHARTPYEVLQHIDQVIPFIELPDL IVQAPPQLNGPGVAAINVGARLGVAGQPIAVPATRGERYALLDALERMEVQLTNDKGE LLASGKGSDILGQPLNAVVWLAQALQQEDITLQPGDLVSLGSFSPLLPPRAGLGVTAT YVGLPGARPVQVHFK" sig_peptide 1684458..1684532 /locus_tag="Alide_1612" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.927 at residue 25" misc_feature 1684602..1685327 /locus_tag="Alide_1612" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 1685346..1686329 /locus_tag="Alide_1613" /db_xref="GeneID:10103659" CDS 1685346..1686329 /locus_tag="Alide_1613" /inference="similar to AA sequence:KEGG:Ajs_1713" /note="KEGG: ajs:Ajs_1713 alpha/beta hydrolase domain-containing protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase domain-containing protein" /protein_id="YP_004126257.1" /db_xref="GI:319762320" /db_xref="InterPro:IPR002168" /db_xref="GeneID:10103659" /translation="MTTTGPDSALPSPHHARLTPQMRSVVDRMARAGRPPLHTLTPAE ARAAYELGAGVLEVPKAALPRVEDLRIPARDGLPLPARLYAPGAGRALPLLLYLHGGG FTVGSVDTHDVLCRELARLAGCMVVSLGYRLAPEHPFPRASDDAWDALAWVAANAARL GADPARLAVGGDSAGGTLAAVSAILARDVGLPLALQLLIYPGTTAHQDTPSHTEFAYG PVLDRAAIGWFFDQYIPSRAEREDWRFAPLLAPDVDGVAPAWIGLAECDPLVDEGVAY GDKLRAAGVAVDLEIYRGVTHEFIKMGRAIPEARQAHQDAAHALRAAFLID" misc_feature 1685652..1686245 /locus_tag="Alide_1613" /note="alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859" /db_xref="CDD:149109" gene 1686339..1687199 /locus_tag="Alide_1614" /db_xref="GeneID:10103660" CDS 1686339..1687199 /locus_tag="Alide_1614" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_1990 thioesterase superfamily protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004126258.1" /db_xref="GI:319762321" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="InterPro:IPR006683" /db_xref="InterPro:IPR006684" /db_xref="GeneID:10103660" /translation="MQRKDFRCCHRLRVRWSEVDIQKIVFNAHYLTYADCAMTEYWRA LALPYEAGMQALDGEVYLKKASVEYHASARLDDLLDLGLRCARVGNTSLVFECGVFAG ERLLAAIELVYVFADPATQTKRAVPPQLRAMIEHFEAGGEMVELRVGDWATLGRDATR LRMAVFVQEQGIDPTIELDEHDATAVHAVAYNRLGQAVSTGRLLYEAPGDARIGRMAV DRVVRGQRWGRMVLDALVDAARSRGDALVTLHAQRSAEGFYRRAGFEVQGEPFEEAGI PHITMRRALP" misc_feature 1686366..1686689 /locus_tag="Alide_1614" /note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active...; Region: 4HBT; cd00586" /db_xref="CDD:48031" misc_feature order(1686441..1686443,1686516..1686518,1686522..1686524, 1686603..1686614) /locus_tag="Alide_1614" /note="active site" /db_xref="CDD:48031" misc_feature 1686816..1687196 /locus_tag="Alide_1614" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(1687203..1687784) /locus_tag="Alide_1615" /db_xref="GeneID:10103661" CDS complement(1687203..1687784) /locus_tag="Alide_1615" /inference="protein motif:PFAM:PF03928" /note="PFAM: protein of unknown function DUF336; KEGG: dac:Daci_1203 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126259.1" /db_xref="GI:319762322" /db_xref="InterPro:IPR005624" /db_xref="GeneID:10103661" /translation="MRMVRTGGFSYSGTHVRSAAAASVNLPKKAPMQAKTIALLATAA IAGAANAQAVRTEKNMSLELASQIATHSIAACAANGYAVAATVVDRAGQVRAQLRADN AGPHTLEASRLKAYTSASAKNSTSAIMEGSQKNPGAANLGQIPGYLLLGGGLPVKAGN EVIGAVGIGGAPGGHLDEQCAKAAIDQVQELLR" sig_peptide complement(1687629..1687784) /locus_tag="Alide_1615" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.848) with cleavage site probability 0.576 at residue 52" misc_feature complement(<1687377..1687604) /locus_tag="Alide_1615" /note="Domain of unknown function (DUF336); Region: DUF336; cl01249" /db_xref="CDD:194079" gene complement(1687809..1688453) /locus_tag="Alide_1616" /db_xref="GeneID:10103662" CDS complement(1687809..1688453) /locus_tag="Alide_1616" /inference="protein motif:PFAM:PF00072" /note="KEGG: dac:Daci_1204 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004126260.1" /db_xref="GI:319762323" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:10103662" /translation="MTASNADLSPLIHLVDDDDAVRGSLALLISTIGLRVQTWADPLS FAARFDREGIGAIVLDVRMPGIGGLALLAQLVDQGVDHPIVLLTGHGTVDMCRRAFKA GAAEFLEKPVDDELLLETLQAAVRQHVRARLQRQADRDAEQRFAELSTRERQVLALIV QGLSNKEMARALELSPRTVEVHRANLFAKLQVPSLAHLVRRYASLAEVDAPPTA" misc_feature complement(1687833..1688438) /locus_tag="Alide_1616" /note="Response regulator [Signal transduction mechanisms]; Region: TtrR; COG4566" /db_xref="CDD:34204" misc_feature complement(1688079..1688414) /locus_tag="Alide_1616" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1688121..1688126,1688133..1688135, 1688190..1688192,1688250..1688252,1688274..1688276, 1688403..1688408)) /locus_tag="Alide_1616" /note="active site" /db_xref="CDD:29071" misc_feature complement(1688274..1688276) /locus_tag="Alide_1616" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1688250..1688258,1688262..1688267)) /locus_tag="Alide_1616" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1688118..1688126) /locus_tag="Alide_1616" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1687851..1688012) /locus_tag="Alide_1616" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature complement(order(1687869..1687871,1687902..1687916, 1687920..1687925,1687929..1687934,1687956..1687964, 1688001..1688009)) /locus_tag="Alide_1616" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature complement(order(1687854..1687856,1687863..1687871, 1687962..1687964,1687968..1687970,1687974..1687976)) /locus_tag="Alide_1616" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene complement(1688450..1689931) /locus_tag="Alide_1617" /db_xref="GeneID:10103663" CDS complement(1688450..1689931) /locus_tag="Alide_1617" /inference="protein motif:PFAM:PF02518" /note="KEGG: dac:Daci_1205 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004126261.1" /db_xref="GI:319762324" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:10103663" /translation="MNGLRRTAPWLLAWLVLAAAGCAWLARQRLQQLHDAFDTDARIA HRVLSQRMVQHEAILATLVLLQPEGPAAGPVPWSALARPYPQVREVLRHDDAAQAWPA GWPQGMDAALAQSRASGHAMLARSDLASGQLYLVQAGSPASFALHLDLHATASADDWP LPSGSPVRAWFTLGSQHYEIQGGAETAGRWHWHWRAEKTLAAASQPLALHMQQTVRAD MLPWAAMLGWVAGSAALLAALRQLMRQRVARRRAEQLLQLGQVARLNTLGELAAGMAH ELNQPLTAVLASSQAAQRLLADDEPNMPLLRQALAQAVAQARRASDVVTRLRRLVERP DAAARTSAIDLPQAAADALHLLEPQLAAHKVQVHTQFAPGLPAASADAVALQQILHNL LANALQAIEAMPLGEHQIWITIAHQGAQLLLTVRDSGPGIAPDMLPRLFIPFATNRDH GLGLGLTLSQSLAETMGGSLQLHEPAPGPGACFALRLPVHATR" misc_feature complement(<1689299..>1689757) /locus_tag="Alide_1617" /note="hypothetical protein; Provisional; Region: PRK06149" /db_xref="CDD:180427" misc_feature complement(1688465..>1689154) /locus_tag="Alide_1617" /note="Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]; Region: COG4191" /db_xref="CDD:33926" misc_feature complement(1688471..1688779) /locus_tag="Alide_1617" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1688483..1688485,1688489..1688494, 1688507..1688509,1688516..1688518,1688564..1688575, 1688636..1688641,1688645..1688647,1688651..1688653, 1688657..1688659,1688729..1688731,1688747..1688749, 1688759..1688761)) /locus_tag="Alide_1617" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1688747..1688749) /locus_tag="Alide_1617" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1688567..1688569,1688573..1688575, 1688639..1688641,1688645..1688647)) /locus_tag="Alide_1617" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(1689954..1691147) /locus_tag="Alide_1618" /db_xref="GeneID:10103664" CDS complement(1689954..1691147) /locus_tag="Alide_1618" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_2202 major facilitator transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126262.1" /db_xref="GI:319762325" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10103664" /translation="MAERAARIAPAWLATVVLVTLNLRPFLTAVGPLTPAIQAHTGLS LQALAWLTLLPMALMGAGTWLAPAVLHRVGARSTLALALALLALGCALRLVPAWLIAT AALCGVGVALVQGVLPGLIKLHTPRHVAPMMGVYSAALMSGGALGAQLSPLALQWGVD WRGALALWSLPVLAALALAWRQLDRMAAPAATGTRGGATAWLLRRPRTWYLMLAFGLM NGGYASMVAWLAPHYQELGLSAARSGTLVAVLSIAQAVAALLLPVLATRGGPDRRPWL WLTLGCQALGFALLARAPLAAPLATAIVLGVGLGGCFTFFMLVALDHLHAPLQAGALN ALMQGGGFLLSALPTWLMARLHQGSGGFSSGWWMQCAIALLVAVLVARFAPARFERAM HPPAP" misc_feature complement(1689960..1691111) /locus_tag="Alide_1618" /note="putative cyanate transporter; Provisional; Region: cynX; PRK09705" /db_xref="CDD:182038" gene complement(1691140..1691631) /locus_tag="Alide_1619" /db_xref="GeneID:10103665" CDS complement(1691140..1691631) /locus_tag="Alide_1619" /inference="protein motif:PFAM:PF00383" /note="PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dia:Dtpsy_2009 CMP/dCMP deaminase zinc-binding" /codon_start=1 /transl_table=11 /product="cmp/dcmp deaminase zinc-binding protein" /protein_id="YP_004126263.1" /db_xref="GI:319762326" /db_xref="GO:0008270" /db_xref="GO:0016787" /db_xref="InterPro:IPR002125" /db_xref="InterPro:IPR016192" /db_xref="GeneID:10103665" /translation="MTLTPATSTSDIALLRRAVDLAHANRMQGGRPFGAVIARDGRQL ATGVNETHQTCDPSAHAEMQALREATRARRDASLAGCSVYASGHPCPMCLAALVMAGA ERVFFAFDNRDAAPYGLSSEGTYQRLRLPLDPPPLLMERLDTGISAAQLYGDAPWPET PRG" misc_feature complement(1691266..1691589) /locus_tag="Alide_1619" /note="Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285" /db_xref="CDD:29828" misc_feature complement(order(1691353..1691355,1691362..1691364, 1691446..1691454,1691485..1691487,1691533..1691535)) /locus_tag="Alide_1619" /note="nucleoside/Zn binding site; other site" /db_xref="CDD:29828" misc_feature complement(order(1691332..1691337,1691344..1691349, 1691356..1691361,1691431..1691433,1691443..1691445, 1691458..1691460)) /locus_tag="Alide_1619" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29828" misc_feature complement(order(1691353..1691355,1691362..1691367, 1691446..1691454)) /locus_tag="Alide_1619" /note="catalytic motif [active]" /db_xref="CDD:29828" gene complement(1691665..1692606) /locus_tag="Alide_1620" /db_xref="GeneID:10103666" CDS complement(1691665..1692606) /locus_tag="Alide_1620" /inference="protein motif:TFAM:TIGR03317" /note="KEGG: ajs:Ajs_1715 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel" /codon_start=1 /transl_table=11 /product="folate-binding protein ygfz" /protein_id="YP_004126264.1" /db_xref="GI:319762327" /db_xref="InterPro:IPR006222" /db_xref="InterPro:IPR013977" /db_xref="InterPro:IPR017703" /db_xref="GeneID:10103666" /translation="MTDPKPVPPPLPAGGVTRLSHLGVIRVAGEDAAKFLHGQLTHDF ALLDLQHARLAAFLTVKGRMLASFIAFKRNDAEVLLVCARELLAPTLKRLSMFVLRAK ARLSDATDDFALYGLLGDAARAVLPEGGEPWAKIDLGEASVVQLYPADGQPRALWLAP ATAGSAPAGAPLDESLWLWSEVRSGIATLTAPVAEAFVPQMLNYESVGGVNFKKGCYP GQEVVARSQFRGTLKRRTYLAHAPSAIAAGAEVFAEGDAEQPVGTVVQAAAAPGGGVD ALVSLQIAAAGGALRAGAADGVPLALLPLPYALLEDI" misc_feature complement(1691833..1692561) /locus_tag="Alide_1620" /note="Predicted aminomethyltransferase related to GcvT [General function prediction only]; Region: COG0354" /db_xref="CDD:30703" misc_feature complement(1691884..1692078) /locus_tag="Alide_1620" /note="folate-binding protein YgfZ; Region: ygfZ_signature; TIGR03317" /db_xref="CDD:163214" gene 1692653..1693648 /locus_tag="Alide_1621" /db_xref="GeneID:10103667" CDS 1692653..1693648 /locus_tag="Alide_1621" /inference="protein motif:PFAM:PF02618" /note="PFAM: aminodeoxychorismate lyase; KEGG: ajs:Ajs_1716 aminodeoxychorismate lyase" /codon_start=1 /transl_table=11 /product="aminodeoxychorismate lyase" /protein_id="YP_004126265.1" /db_xref="GI:319762328" /db_xref="InterPro:IPR003770" /db_xref="GeneID:10103667" /translation="MRRFLVLVLLVVLALAAGAAWWLQAPMPVRAGVGAGQPLELEIE PGTTPRGVARAVVQAGFDTDARLLFLWFRLSGKDRGIKAGNYEVAQGTSPHALLQKLV RGEEALRAVTLVEGWNFRQLRQALARAEQLRPDTEGLSDADIMARLDRPGVPAEGRFF PDTYTYAKGSSDLAVLRRALHAMDRRLEAAWAQRAPDTPLKSPEQALILASIVEKETG RPEDRAQIAGVFSNRLRAGMLLQTDPTVIYGLGERFDGNLRKRDLQADTPYNTYTRAG LPPTPIAMPGRAALLAAVQPADTRALYFVARGDGTSHFSVTLDEHNRAVNRYQRK" sig_peptide 1692653..1692712 /locus_tag="Alide_1621" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.876 at residue 20" misc_feature 1692770..1693636 /locus_tag="Alide_1621" /note="YceG-like family; Region: YceG; pfam02618" /db_xref="CDD:190367" misc_feature 1692893..1693627 /locus_tag="Alide_1621" /note="proteins similar to Escherichia coli yceG; Region: yceG_like; cd08010" /db_xref="CDD:153433" misc_feature order(1692893..1692895,1692899..1692916,1692941..1692943, 1692953..1692955,1692974..1692979,1692986..1692988, 1693373..1693375,1693379..1693381,1693430..1693432, 1693439..1693441,1693580..1693585,1693604..1693606, 1693613..1693618,1693625..1693627) /locus_tag="Alide_1621" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153433" gene 1693645..1694301 /locus_tag="Alide_1622" /db_xref="GeneID:10103668" CDS 1693645..1694301 /locus_tag="Alide_1622" /EC_number="2.7.4.9" /inference="protein motif:TFAM:TIGR00041" /note="TIGRFAM: thymidylate kinase; KEGG: dia:Dtpsy_1987 thymidylate kinase; PFAM: thymidylate kinase" /codon_start=1 /transl_table=11 /product="thymidylate kinase" /protein_id="YP_004126266.1" /db_xref="GI:319762329" /db_xref="GO:0004798" /db_xref="GO:0005524" /db_xref="InterPro:IPR000062" /db_xref="InterPro:IPR018094" /db_xref="GeneID:10103668" /translation="MTTGLFITFEGIDGAGKSSHIETLARALRAAGRSVTLTREPGGT PLAEKLRALLLNDAMDALTETLLAFAARRDHLCRVIGPALARGEAVLCDRFTDATFAY QGAGRGFDLRVLSYMERLAQTGIGLGPDLMLEPDLTLWFDVPPEVAAERLAAARAPDR FEAQPVEFFARVARGYADRAAGAPRRFARIDGAQPREQVAAQMLAAVAARGWLPGAAP " misc_feature 1693648..1694235 /locus_tag="Alide_1622" /note="thymidylate kinase; Validated; Region: tmk; PRK00698" /db_xref="CDD:179089" misc_feature 1693657..1694235 /locus_tag="Alide_1622" /note="Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting...; Region: TMPK; cd01672" /db_xref="CDD:30190" misc_feature order(1693696..1693698,1693846..1693848,1693858..1693860, 1693921..1693926,1693948..1693950,1694107..1694109) /locus_tag="Alide_1622" /note="TMP-binding site; other site" /db_xref="CDD:30190" misc_feature order(1693699..1693701,1694095..1694097,1694218..1694220) /locus_tag="Alide_1622" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:30190" gene 1694298..1695293 /locus_tag="Alide_1623" /db_xref="GeneID:10103669" CDS 1694298..1695293 /locus_tag="Alide_1623" /inference="similar to AA sequence:KEGG:Ajs_1718" /note="KEGG: ajs:Ajs_1718 DNA-directed DNA polymerase" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_004126267.1" /db_xref="GI:319762330" /db_xref="GeneID:10103669" /translation="MNAVAPWIAAQRAQLLAQRGHAWLLHGPSGLGQYALALELVRAW LCDAPGEHGACGRCASCHGIDVRTHADLCVLMPETQMLALGWPLPEKAQAEIEDKKRK ASREIRVEAMRDAVEFAQRTSARGRGKAVLVFPAEQMNHVTANALLKTLEEPPGDVRF VLATEAAHELLPTIRSRCLGHAMLWPRPDEARGWLAGQGVAPDAAQALLRAAGGRPDD ALALARAGRSPQAWALIPKAMARGDVSALSELEPAQAVDALQKLCHDLLAQRVGAQPR YFDAADLPRPPGLGPLTRWSRALIQEARTADHPFNAGLMLESLVAQARQTLNSRH" misc_feature 1694358..1695272 /locus_tag="Alide_1623" /note="DNA polymerase III subunit delta'; Validated; Region: PRK06964" /db_xref="CDD:180779" misc_feature <1694688..>1694828 /locus_tag="Alide_1623" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 1695310..1695669 /locus_tag="Alide_1624" /db_xref="GeneID:10103670" CDS 1695310..1695669 /locus_tag="Alide_1624" /inference="protein motif:PFAM:PF07238" /note="PFAM: type IV pilus assembly PilZ; KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ" /codon_start=1 /transl_table=11 /product="type iv pilus assembly pilz" /protein_id="YP_004126268.1" /db_xref="GI:319762331" /db_xref="InterPro:IPR009875" /db_xref="GeneID:10103670" /translation="MSSPSTAPRPSVMQLNIKEKAALYAAYIPFFEEGGIFVPTTREY RLGDDVYVLLTLPDDPQRYPVAGRVAWVTPARAVGNRTQGVGIQFPKDEKSRQLKLKI EEILGTALAADRPTQTI" misc_feature 1695316..1695666 /locus_tag="Alide_1624" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene 1695731..1696540 /locus_tag="Alide_1625" /db_xref="GeneID:10103671" CDS 1695731..1696540 /locus_tag="Alide_1625" /inference="protein motif:TFAM:TIGR00010" /note="KEGG: ajs:Ajs_1720 TatD family hydrolase; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease" /codon_start=1 /transl_table=11 /product="hydrolase, tatd family" /protein_id="YP_004126269.1" /db_xref="GI:319762332" /db_xref="InterPro:IPR001130" /db_xref="InterPro:IPR012278" /db_xref="InterPro:IPR015991" /db_xref="InterPro:IPR018228" /db_xref="GeneID:10103671" /translation="MFVDSHCHLNFPELASQLPQIRQAMAAAQVDRALCICTTMEEFP AVHGLATAYDNFWATVGVHPDTEDMAEPSVQDLLERAVLPRVVAIGETGLDYYGMEDR KGGRSIADLEWQRERFRTHIRAARACGKPLVIHTRSASGDTLAILREEGEDGAGNRAG GVFHCFTETAEVARAALDLGYYISFSGIITFKNAQDLRDVAAFVPMDRLLIETDSPYL APVPYRGKTNNPSYVPFVAQQIAAIRGLPVQEVARATSRNFERLFLQGGAA" misc_feature 1695734..1696519 /locus_tag="Alide_1625" /note="putative deoxyribonuclease YjjV; Provisional; Region: PRK11449" /db_xref="CDD:171118" misc_feature 1695734..1696519 /locus_tag="Alide_1625" /note="TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310" /db_xref="CDD:30053" misc_feature order(1695746..1695748,1695752..1695754,1696133..1696135, 1696220..1696222,1696370..1696372) /locus_tag="Alide_1625" /note="active site" /db_xref="CDD:30053" gene 1696537..1697217 /locus_tag="Alide_1626" /db_xref="GeneID:10103672" CDS 1696537..1697217 /locus_tag="Alide_1626" /inference="similar to AA sequence:KEGG:Dtpsy_1983" /note="KEGG: dia:Dtpsy_1983 ankyrin" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126270.1" /db_xref="GI:319762333" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR017909" /db_xref="InterPro:IPR020683" /db_xref="GeneID:10103672" /translation="MTSRRRTLAWLALAAAAPVAGLAHAGAYEDFFKAIELDNGAAVA DLLRRGFDPNARDPKGQPALIVALRGDSRKAAAALIAAKGLKVEERNAKDESALMLAA LRGNLSAARALIRLDADVNKTGWTPLHYAASGTTQDAAAMVALLLEESAYIDAASPNG TTPLMMAVRYGTGDVALLLIEEGADPTLKNDLGLTAIDFARQADRADMVDLVAQAVRR RQPNRGRW" sig_peptide 1696537..1696614 /locus_tag="Alide_1626" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.975 at residue 26" misc_feature <1696648..>1696920 /locus_tag="Alide_1626" /note="ankyrin-like protein; Provisional; Region: PHA03095" /db_xref="CDD:177527" misc_feature 1696801..1697172 /locus_tag="Alide_1626" /note="ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204" /db_xref="CDD:29261" misc_feature 1696828..1697106 /locus_tag="Alide_1626" /note="Ankyrin repeats (3 copies); Region: Ank_2; pfam12796" /db_xref="CDD:193272" gene 1697412..1697657 /locus_tag="Alide_1627" /db_xref="GeneID:10103673" CDS 1697412..1697657 /locus_tag="Alide_1627" /inference="similar to AA sequence:KEGG:Hoch_1597" /note="KEGG: hoh:Hoch_1597 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126271.1" /db_xref="GI:319762334" /db_xref="GeneID:10103673" /translation="MERSPTSSSCQHALLVHSPVGHVSVCPDCGVVHLSLDCVSVRLE VGAFLALAEMLSQAQKRLHGMPPHESRGHEGRARAVH" gene 1697689..1698906 /locus_tag="Alide_1628" /db_xref="GeneID:10103674" CDS 1697689..1698906 /locus_tag="Alide_1628" /inference="similar to AA sequence:KEGG:CAP2UW1_0424" /note="KEGG: app:CAP2UW1_0424 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126272.1" /db_xref="GI:319762335" /db_xref="GeneID:10103674" /translation="MCDECFRPLAAINGSRRKRLWDLPHPCHCPVVGVCFPLPVLRQL VGKALVGKAVADDYEIHLGAVAECMKRNRLSEVLQKELESRYAGAVQAFRAAKDTQAV ADMWAAAVRGGDVPGAFWAVLTHPRCDELLQEAVLRDMHMLQHQAGAAAWVDAARFGE LVKENGVLGRELGRVQERCTRVISEKSVEIERLNAQLVQQRAIAIGKDSRIAFLTQDL ERLQASLPGYEDTARLRRKLEQLGARLAGLEAQNARLRQQLGEAQCLLGLREAEAAPA AEHRGDAPRESPVAFHFKEKTVLCVGGRNGNVSSYRDVVEKAGGHFAHHDGGLEDKQG ALDSVLAAADLVICQTGCISHNAYWRVKDFCKRTGKQCVFVENPSTSSLTRTLQQITA GDSAEKPAADAGR" misc_feature <1698154..>1698477 /locus_tag="Alide_1628" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:162739" misc_feature 1698577..1698864 /locus_tag="Alide_1628" /note="Uncharacterized protein conserved in bacteria (DUF2325); Region: DUF2325; cl01811" /db_xref="CDD:154601" gene complement(1698910..1699587) /locus_tag="Alide_1629" /db_xref="GeneID:10103675" CDS complement(1698910..1699587) /locus_tag="Alide_1629" /inference="protein motif:PFAM:PF07729" /note="KEGG: aav:Aave_3515 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH" /codon_start=1 /transl_table=11 /product="gntr domain protein" /protein_id="YP_004126273.1" /db_xref="GI:319762336" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10103675" /translation="MTSPADAPQNLTDRVSEQIRRKLVDGELTPGQRLSEAALSESLE ISRNTLREAFRLLTKEGLLKHEPNRGVSVAIPSIAAIIDIYRVRRLIECQALAQAYPR HPARKRLREAVDKALRCRGEGDWRGVGTANMEFHQAIVELADSERLNEMFSHLLAELR LAFGLLNDPEFLHAPYVDSNVKIVELFEAGKPQEAAAVLNDYLVHSERIVLAAYARRI SDAGAGK" misc_feature complement(1698937..1699587) /locus_tag="Alide_1629" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature complement(1699369..1699557) /locus_tag="Alide_1629" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(1699375..1699386,1699390..1699395, 1699423..1699425,1699432..1699437,1699441..1699455, 1699474..1699479,1699483..1699485,1699552..1699554)) /locus_tag="Alide_1629" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(1698973..1699335) /locus_tag="Alide_1629" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene 1699851..1701098 /locus_tag="Alide_1630" /db_xref="GeneID:10103676" CDS 1699851..1701098 /locus_tag="Alide_1630" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_B1760 major facilitator superfamily transporter AAHS family protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126274.1" /db_xref="GI:319762337" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10103676" /translation="MWLKETSQEERKTLFAAFVGYGVDAFDYMIYTFMIPTFILVWGM TKTEAGYIATGALISSAIGGWLAGILADKYGRVRILQLTVLWFSFFTFLSGFTHSPEQ LFVTRALQGLGFGGEWSVGSVLIAEMIRARHRGKAVGLVQSSWAVGWGLSAIAFWAVY ALVEQQTAWRVLFWLGVLPALFILYIRRNISEPTVFRATQERLAKTGQSSHFMLIFKP GVLRVTVWASLLATGMQGAYYSVTTWLPTYLKMERNLSVLNTSGYLMVLIAGSFAGYL TSAWLSDRLGRRRCFMLFAVSAAVLVTFYTQLPITDAAMMVLGFPLGFFLSGIFSGMG AYLTELYPSHIRGSGQGFCYNFGRAVGSVCPAMVGYMSSTMSLGVAIGYMAVGAYALV VIACLALPETQGRELAEAAEPTA" misc_feature 1699884..1700963 /locus_tag="Alide_1630" /note="benzoate transport; Region: 2A0115; TIGR00895" /db_xref="CDD:162095" misc_feature 1699890..1701041 /locus_tag="Alide_1630" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(1699932..1699934,1699941..1699949,1699953..1699958, 1700007..1700009,1700016..1700021,1700028..1700030, 1700040..1700045,1700049..1700054,1700190..1700195, 1700202..1700207,1700214..1700219,1700226..1700228, 1700262..1700267,1700274..1700279,1700295..1700297, 1700553..1700555,1700562..1700567,1700574..1700579, 1700586..1700588,1700628..1700630,1700640..1700642, 1700652..1700654,1700661..1700663,1700673..1700675, 1700817..1700819,1700826..1700831,1700838..1700840, 1700850..1700855,1700862..1700864,1700895..1700900, 1700907..1700912,1700919..1700924,1700931..1700933) /locus_tag="Alide_1630" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 1701126..1701887 /locus_tag="Alide_1631" /db_xref="GeneID:10103677" CDS 1701126..1701887 /locus_tag="Alide_1631" /inference="protein motif:PFAM:PF03746" /note="PFAM: LamB/YcsF family protein; KEGG: aav:Aave_3513 LamB/YcsF family protein" /codon_start=1 /transl_table=11 /product="lamb/ycsf family protein" /protein_id="YP_004126275.1" /db_xref="GI:319762338" /db_xref="InterPro:IPR005501" /db_xref="GeneID:10103677" /translation="MTRHIDLNSDLGESLGAWRMGDDDAMLDIVSSANVACGFHAGDP AGILGTLKAAHARGVAVGAHVAYPDLVGFGRRNMDVASSDLVADVIYQIGALQGLAHA AGTRVTYVKPHGALYNTIAHDERQARDVIAAIRAVDGSLALVALAGSPLVQWAQDAGL RVIAEAFADRAYTPQGTLVSRREKGAVLHDSALVAQRMLRLVREGVVEAVDGSLARVQ AQSICVHGDSAGAVEMARAVRMALESDGVVVRPFA" misc_feature 1701129..1701866 /locus_tag="Alide_1631" /note="LamB/YcsF family; Region: LamB_YcsF; cl00664" /db_xref="CDD:186134" gene 1701910..1702722 /locus_tag="Alide_1632" /db_xref="GeneID:10103678" CDS 1701910..1702722 /locus_tag="Alide_1632" /inference="protein motif:PFAM:PF07286" /note="PFAM: protein of unknown function DUF1445; KEGG: reh:H16_B1759 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126276.1" /db_xref="GI:319762339" /db_xref="InterPro:IPR009906" /db_xref="InterPro:IPR016938" /db_xref="GeneID:10103678" /translation="MQHNALEQARAAAVAAARQARAAYRAGSVRPTAGVAPGMTQANM IALPRDWAWDFLLYAQRNPKPCPVLDVIEAGAHQTLLAEGADIRTDIPLYRVWRDGRL AQEVQDATPLWAEHPDLVTFLIGCSFTFETPLQEAGIEVRHIADGCNVPMYRTNRACR PAGRLRGEMVVSMRPIPAHRVADAVAISARFPSVHGAPVHVGDPAALGIADLARPDFG DPVRIAPGELPVFWACGVTPQAAVMASGVPFAVTHAPGHMFITDVPDSSYHV" misc_feature 1701994..1702719 /locus_tag="Alide_1632" /note="Protein of unknown function (DUF1445); Region: DUF1445; cl01790" /db_xref="CDD:186475" gene 1702730..1704331 /locus_tag="Alide_1633" /db_xref="GeneID:10103679" CDS 1702730..1704331 /locus_tag="Alide_1633" /EC_number="6.3.4.6" /inference="protein motif:TFAM:TIGR00724" /note="SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: urea amidolyase related protein; KEGG: reu:Reut_A2450 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1" /codon_start=1 /transl_table=11 /product="urea amidolyase related protein" /protein_id="YP_004126277.1" /db_xref="GI:319762340" /db_xref="InterPro:IPR003778" /db_xref="InterPro:IPR003833" /db_xref="InterPro:IPR010016" /db_xref="GeneID:10103679" /translation="MRFLPVSLNALLVELADLDQTLALLASLQREPLPGVLELVPAAR TILVQFSPSATDTARLVRAIAARDLSQQVRRGGILVEIPVRYDGEDLAEVAQMLGITR EELVRRHTGSAYSVAFVGFAPGFAYLSGGHESLDVPRRATPRTRIPAGAVGLAGRFSG VYPQASPGGWQIIGTTPLAMWDLERPVPALLQPGFQVRFVDIATLSEAARAELESAIA PKHAKPAAPVAADGPALEVRSPGLLTLLQDLGRPGQAGQGVSASGALDQGACRTANRL VGNPSGMACLETVGGGLRLRSRGDTVVAVTGADAPLTLATAGGARWHVPRYQAVALAD GDELAVGEPAAGTRCYVAARGGFDVAPVLGSRSTDTLAHVGPPALAAGDVLALCAVAR GAVVGDAELPPDDLPSVHEDVVLDVVPGPRADWFTPEALELLARQRWRVTPQSNRVGL RLAGEVPLARAITQELPSEGTPTGAIQVPASGQPVLFLADHPLTGGYPVIACVAPHHL DRAGQIPVNAWVRFHPIRPFEAIEC" misc_feature 1702730..1703296 /locus_tag="Alide_1633" /note="Allophanate hydrolase subunit 1; Region: AHS1; smart00796" /db_xref="CDD:129032" misc_feature 1702820..1703335 /locus_tag="Alide_1633" /note="Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; Region: DUR1; cl00896" /db_xref="CDD:176822" misc_feature 1703522..1704325 /locus_tag="Alide_1633" /note="Allophanate hydrolase subunit 2; Region: AHS2; cl00865" /db_xref="CDD:176587" misc_feature 1703522..1704319 /locus_tag="Alide_1633" /note="Allophanate hydrolase subunit 2; Region: AHS2; pfam02626" /db_xref="CDD:145662" gene 1704325..1706067 /locus_tag="Alide_1634" /db_xref="GeneID:10103680" CDS 1704325..1706067 /locus_tag="Alide_1634" /inference="protein motif:PFAM:PF02786" /note="PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: dac:Daci_5726 carbamoyl-phosphate synthase L chain ATP-binding" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase l chain ATP-binding protein" /protein_id="YP_004126278.1" /db_xref="GI:319762341" /db_xref="GO:0003824" /db_xref="GO:0005524" /db_xref="GO:0016874" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR001882" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011764" /db_xref="GeneID:10103680" /translation="MLNAMKRVLIANRGEIAVRVVRACRDYGVQSVAVYADADIDALH VRMADEAYGLHGDRPADTYLHIAKLLDVARKSGADAVHPGYGFLSESAAFAQAVMDAG LAWIGPSPRAIARLGDKVEARKIALKVGAPLVAGTPEPVKDAAEVLAFAGQHGLPIII KAAFGGGGRGMKIAWRMDEVAELYASAVREATAAFGRGECFVEQFLDRPRHIEAQVMG DRHGRVVVLGTRDCSLQRRNQKLVEEAPAPFLTDVQRQRIHQAAHDICAEVGYEGAGT VEFLLSGSGAISFLEVNTRLQVEHPVTEQTTGLDLVVEQLRVADGLPLSIAETPAPLG HAIEFRINAEDVGRGFLPTPGQVARFDPPAGPGVRVDSGVQAGSIVPGTFDSLMAKLI VTGATREQALARARRALAEFRIEGVASVLPFHRAVMEHADFTGADGFKVHTRWIETAF ANDLAAAARAEPQPDAALVRCTIEIDGRRMQLGLPAALLQGLASAGGGAAAAAPAAQE STDEAAVASPIAGNLHAWKVGEGDAVREGDVIAVMEAMKMEMQVAAHRAGRITLQAAA GSYQAAGACIARIC" misc_feature 1704337..1705665 /locus_tag="Alide_1634" /note="acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591" /db_xref="CDD:181492" misc_feature 1704340..1704660 /locus_tag="Alide_1634" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature 1704676..1705302 /locus_tag="Alide_1634" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 1705336..1705665 /locus_tag="Alide_1634" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" misc_feature 1705864..>1706007 /locus_tag="Alide_1634" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature order(1705933..1705935,1705960..1705968,1705987..1705989) /locus_tag="Alide_1634" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature 1705963..1705965 /locus_tag="Alide_1634" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene complement(1706130..1707911) /locus_tag="Alide_1635" /db_xref="GeneID:10103681" CDS complement(1706130..1707911) /locus_tag="Alide_1635" /inference="protein motif:TFAM:TIGR02203" /note="TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dia:Dtpsy_1982 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="lipid a abc exporter, fused atpase and inner membrane subunits msba" /protein_id="YP_004126279.1" /db_xref="GI:319762342" /db_xref="GO:0005524" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011917" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR017940" /db_xref="GeneID:10103681" /translation="MQDSNHSATKTGSPQAVQPLSLLARLRRLHTYFGHQRLAWAMAL LATVVAAVTEPLIPALLKPLLDQGFTEGSLQLWMVPVAIIGVFLVRGLAQFTSQYALT RIANEGMLRLRTALFERLLAADMRLFRHQSASALSNTVVYEVQTGFTSLVQALVGLSR DGFTLVALLGYLVYLNWQLTLIVAVLVPGVAWVMKALSRRLYKITKSSQQATDDLAYV VEENVLAHRMVRLHGAQAGQGERFDTLSQKLRRLAIKSTIASAAMTPTTQLLSAGALS TVICIALWQSHGHGVKDVTVGGFASFIAAMLMLIAPMRRLADVANPITRGVAALERGL VLLSDTPAESGGSHVAARARGAISLRDASVRFDAEHAPALDAVSLDIHPGEVVALVGP SGAGKTTLVNLLPRFVTPSGGQVLLDGVPVQDWDLDCLRAQFAMVSQDVVMFNDSIAA NVALGAPVDEQRVQQCLAAANLAQHVAALPQGMHTVVGHNATQLSGGQRQRLAIARAL YKDAPVLILDEATSALDTESERLVQEALQRLMRGRTTLVIAHRLSTIEHADRVVVMER GRIAEQGTHADLVAAGGLFARLQAHGS" misc_feature complement(1706142..1707833) /locus_tag="Alide_1635" /note="lipid A export permease/ATP-binding protein MsbA; Region: MsbA_lipidA; TIGR02203" /db_xref="CDD:131258" misc_feature complement(1706973..1707755) /locus_tag="Alide_1635" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(1706145..1706843) /locus_tag="Alide_1635" /note="MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic...; Region: ABCC_MsbA; cd03251" /db_xref="CDD:73010" misc_feature complement(1706718..1706741) /locus_tag="Alide_1635" /note="Walker A/P-loop; other site" /db_xref="CDD:73010" misc_feature complement(order(1706262..1706264,1706355..1706360, 1706595..1706597,1706715..1706723,1706727..1706732)) /locus_tag="Alide_1635" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73010" misc_feature complement(1706595..1706606) /locus_tag="Alide_1635" /note="Q-loop/lid; other site" /db_xref="CDD:73010" misc_feature complement(1706403..1706432) /locus_tag="Alide_1635" /note="ABC transporter signature motif; other site" /db_xref="CDD:73010" misc_feature complement(1706355..1706372) /locus_tag="Alide_1635" /note="Walker B; other site" /db_xref="CDD:73010" misc_feature complement(1706337..1706348) /locus_tag="Alide_1635" /note="D-loop; other site" /db_xref="CDD:73010" misc_feature complement(1706256..1706276) /locus_tag="Alide_1635" /note="H-loop/switch region; other site" /db_xref="CDD:73010" gene 1708045..1709367 /locus_tag="Alide_1636" /db_xref="GeneID:10103682" CDS 1708045..1709367 /locus_tag="Alide_1636" /inference="protein motif:TFAM:TIGR02800" /note="KEGG: dia:Dtpsy_1981 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain-containing protein; WD40-like beta Propeller containing protein" /codon_start=1 /transl_table=11 /product="tol-pal system beta propeller repeat protein tolb" /protein_id="YP_004126280.1" /db_xref="GI:319762343" /db_xref="InterPro:IPR007195" /db_xref="InterPro:IPR011659" /db_xref="InterPro:IPR014167" /db_xref="GeneID:10103682" /translation="MTIDRTPPSTSLPSTLLPLSRRHAVAALAAGSTLPALAQFRVEI TGVGLTQLPIAIAPLRGEAQSPQKISAIVQADLERSGRFTGVDATGVALDETSRPDLS QWRQRKADALSTGSVTRLADGRFDVRFRLWDVVKGQDLGGQSFTVTQADLRLVAHRIA DFIYEKLTGERGVFSTRIAYVTKVGARYSLWVADADGENAQSALSSPEPIISPAWSPS GAQLAYVSFESRKPVVYVHDVATGRRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGGS QLYTIDANGGEPRRLMQSSGIDTEPAFSSDGRSIYFVSDRGGSPQIYRVAAGGGNAER VTFNGAYNISPAISPDGQWLAYISRVGGAFKLHVMDLRSGSVTALTDSSADESPSFAP NSRLILYATQQQGREALMTTTLDGKIKARLAGQGGDIREPDWGPFQKQ" sig_peptide 1708045..1708161 /locus_tag="Alide_1636" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.692) with cleavage site probability 0.670 at residue 39" misc_feature 1708111..1709361 /locus_tag="Alide_1636" /note="translocation protein TolB; Provisional; Region: tolB; PRK02889" /db_xref="CDD:179493" misc_feature 1708162..1708464 /locus_tag="Alide_1636" /note="TolB amino-terminal domain; Region: TolB_N; pfam04052" /db_xref="CDD:190844" misc_feature 1708771..1708881 /locus_tag="Alide_1636" /note="WD40-like Beta Propeller Repeat; Region: PD40; pfam07676" /db_xref="CDD:191808" misc_feature 1708906..1709016 /locus_tag="Alide_1636" /note="WD40-like Beta Propeller Repeat; Region: PD40; pfam07676" /db_xref="CDD:191808" misc_feature 1709041..1709148 /locus_tag="Alide_1636" /note="WD40-like Beta Propeller Repeat; Region: PD40; pfam07676" /db_xref="CDD:191808" gene 1709411..1709953 /locus_tag="Alide_1637" /db_xref="GeneID:10103683" CDS 1709411..1709953 /locus_tag="Alide_1637" /inference="protein motif:TFAM:TIGR02802" /note="KEGG: dia:Dtpsy_1980 peptidoglycan-associated lipoprotein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein" /codon_start=1 /transl_table=11 /product="peptidoglycan-associated lipoprotein" /protein_id="YP_004126281.1" /db_xref="GI:319762344" /db_xref="InterPro:IPR006664" /db_xref="InterPro:IPR006665" /db_xref="InterPro:IPR006690" /db_xref="InterPro:IPR010916" /db_xref="InterPro:IPR014169" /db_xref="GeneID:10103683" /translation="MKQSSFKRVSLALTIAALMAGCSSGVKLDDVPVEDKGATSTVPG ANSGGTSQSGVAPVDLTQSGREAGGPVGVARIIYFDFDSFTVKPEYQSVLEGHSRYLK ASSARKVMLEGHTDERGGREYNLALGQKRAEAVRRSLALLGVPDAQMEAVSYGEEKPA AQGHSESAFAQNRRVELSYR" misc_feature 1709411..1709950 /locus_tag="Alide_1637" /note="Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885" /db_xref="CDD:32711" sig_peptide 1709411..1709497 /locus_tag="Alide_1637" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.477 at residue 29" misc_feature 1709639..1709941 /locus_tag="Alide_1637" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature order(1709651..1709656,1709753..1709758,1709765..1709767, 1709777..1709782,1709789..1709791,1709915..1709917, 1709927..1709929) /locus_tag="Alide_1637" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene 1709953..1710741 /locus_tag="Alide_1638" /db_xref="GeneID:10103684" CDS 1709953..1710741 /locus_tag="Alide_1638" /inference="protein motif:TFAM:TIGR02795" /note="TIGRFAM: tol-pal system protein YbgF; KEGG: ajs:Ajs_1725 TPR repeat-containing protein" /codon_start=1 /transl_table=11 /product="tol-pal system protein ybgf" /protein_id="YP_004126282.1" /db_xref="GI:319762345" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR014162" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10103684" /translation="MAARMSFPHRSRVLSTVVFAAAATWAMPSHALFGDDEARRAILE LRQRVDALQQANQRAGERSGDEVSQLRRSLLDLQAQIEALRTEQASLRGQNEQLLRDV AELQRRQKDMARGVDERLRQFEPVAVNVDGREFRADPAEKRDFEAALAVFRSGKFPEA ATAFGNFVRQYPQSGYVPSARFWLGNAQYATRDYKEAIANFKGLLAAAPDHARAPEAA LSIANCQIELKDTRAARKTLEDLLRAYPQSEAAAAAKERLARLK" sig_peptide 1709953..1710048 /locus_tag="Alide_1638" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.492 at residue 32" misc_feature 1709965..1710696 /locus_tag="Alide_1638" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1729" /db_xref="CDD:31915" gene 1710750..1711514 /locus_tag="Alide_1639" /db_xref="GeneID:10103685" CDS 1710750..1711514 /locus_tag="Alide_1639" /inference="protein motif:PFAM:PF00899" /note="PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: aav:Aave_3403 UBA/ThiF-type NAD/FAD binding protein" /codon_start=1 /transl_table=11 /product="uba/thif-type nad/fad binding protein" /protein_id="YP_004126283.1" /db_xref="GI:319762346" /db_xref="GO:0003824" /db_xref="InterPro:IPR000594" /db_xref="GeneID:10103685" /translation="MHEPADLERRFGGLARLFGVEGSTRIRAAHVAVVGIGGVGSWAA EALARSGVGRLTLIDLDHVAESNINRQIHALSTTLGQAKVHAMAERIALINPACRVEC VEEFVEPANWPAILPGPVDAVIDACDQVRAKTAMAAWALQNRRPFITVGAAGGKRLAH KVDVDDLAHTTHDPLLAQLRYRLRREHGAARDGRRMGIACVFSREAVAPPHASCAVQE GDGTLNCHGYGSSVAVTATFGQCAAGWVLDGLSGKP" misc_feature 1710771..1711511 /locus_tag="Alide_1639" /note="Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]; Region: COG1179" /db_xref="CDD:31372" misc_feature 1710801..1711490 /locus_tag="Alide_1639" /note="Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-...; Region: YgdL_like; cd00755" /db_xref="CDD:30110" misc_feature order(1710852..1710854,1710858..1710860,1710864..1710866, 1710924..1710926,1710930..1710932,1710957..1710959, 1710996..1710998,1711125..1711127,1711143..1711145) /locus_tag="Alide_1639" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:30110" misc_feature order(1710864..1710866,1711146..1711148,1711200..1711205, 1711221..1711223) /locus_tag="Alide_1639" /note="putative substrate interface [chemical binding]; other site" /db_xref="CDD:30110" gene 1711561..1711636 /locus_tag="Alide_R0024" /note="tRNA-Lys1" /db_xref="GeneID:10103686" tRNA 1711561..1711636 /locus_tag="Alide_R0024" /product="tRNA-Lys" /db_xref="GeneID:10103686" gene complement(1711662..1712675) /locus_tag="Alide_1640" /db_xref="GeneID:10103687" CDS complement(1711662..1712675) /locus_tag="Alide_1640" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: hse:Hsero_0876 site-specific phage recombinase/integrase" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004126284.1" /db_xref="GI:319762347" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10103687" /translation="MSISYDKRNKRWRFEFDRYIAGQRQRTSRLLPKGYTRAEADKFD LEETKRLHAIATGVSKPEPLIEDAVLLYLKHHAPALKSFENIRRELQACFEAYAGKPF SALPAVALNYKPKDADGKALSAATARNRLAYIRAACRYAWKHHGMGDANPASSLPMPK VRNERHVYLGRAEFLAICRCIKPGPSRACIRIAFYSGMRAAEPGMAAVSSDGSAFILA PEDTKNHLPRVVPVHPRIAHILRNPALWPPRRTKWTVSKEFKAGARLAGMGHARLHDL RHSTASEMINAGVDLYTVGGVLGHKSAVSTRRYSHLATKTLAAAVALVGKKPRTTGKK KAA" misc_feature complement(1711743..1712162) /locus_tag="Alide_1640" /note="C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family include the bacteriophage lambda integrase, the...; Region: INT_REC_C; cd01182" /db_xref="CDD:29503" misc_feature complement(1711743..1712159) /locus_tag="Alide_1640" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature complement(order(1711749..1711751,1711854..1711859, 1712007..1712009,1712076..1712081)) /locus_tag="Alide_1640" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29503" misc_feature complement(order(1711749..1711751,1711776..1711778, 1711845..1711847,1711854..1711856,1712007..1712009, 1712079..1712081)) /locus_tag="Alide_1640" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29503" misc_feature complement(order(1711749..1711751,1711776..1711778, 1711845..1711847,1711854..1711856,1712079..1712081)) /locus_tag="Alide_1640" /note="active site" /db_xref="CDD:29503" misc_feature complement(order(1711749..1711751,1711845..1711847, 1712079..1712081)) /locus_tag="Alide_1640" /note="catalytic residues [active]" /db_xref="CDD:29503" gene complement(1713077..1713679) /locus_tag="Alide_1641" /db_xref="GeneID:10103688" CDS complement(1713077..1713679) /locus_tag="Alide_1641" /inference="similar to AA sequence:KEGG:Rpal_3050" /note="manually curated; KEGG: rpt:Rpal_3050 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126285.1" /db_xref="GI:319762348" /db_xref="GeneID:10103688" /translation="MIAALYVETGGAYFGLPGVDPWDEARDARQYCGPWPVVAHPPCQ RWGAMANVNYARWGGEHNRPGNDFGCFKAALRAVQTFGGVLEHPAKSRAFDFHGLSRP RGLGWQPCRTGGWVCEVWQSAYGHRANKATWLYCFGTERPPELRWERPIGSHQVGFHD QRGKDRNKPTLSRREAAATPPAFRDLLIGIARSAARERVS" gene complement(1713776..1713994) /locus_tag="Alide_1642" /db_xref="GeneID:10103689" CDS complement(1713776..1713994) /locus_tag="Alide_1642" /inference="similar to AA sequence:KEGG:PODANSg1201" /note="KEGG: pan:PODANSg1201 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126286.1" /db_xref="GI:319762349" /db_xref="GeneID:10103689" /translation="MARLADTEVERRLGYTPCVCGQLDGTWHPECYRNKTRQQTNALT KKAIQKAREQFAAEDRGIKKENGNGLPT" gene complement(1713987..1714727) /locus_tag="Alide_1643" /db_xref="GeneID:10103690" CDS complement(1713987..1714727) /locus_tag="Alide_1643" /inference="similar to AA sequence:KEGG:Bphy_1918" /note="KEGG: bph:Bphy_1918 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126287.1" /db_xref="GI:319762350" /db_xref="GeneID:10103690" /translation="MTTNTNAAKVANNLIAVAEGQAFEAWYKQDYLVGGVNARIAARA AWNARAALTTAAAVPPELSPDFTDTARAALLWVLWHHQGGSSPVGQPIRFALGMGQHD RLNEHQLAEAKRWERLHPANPAVFPRGPEPLTDGLLQQHNRDSQELRRLCAARDQARS ERDALKAEIAGLEASCSTLGRLVDELRPDAERLEWVLRRVSGTWLRAYLGVVSDTSDM DTLRTLIDANRGALTAHGIGIKKEENNG" gene complement(1714724..1714933) /locus_tag="Alide_1644" /db_xref="GeneID:10103691" CDS complement(1714724..1714933) /locus_tag="Alide_1644" /inference="similar to AA sequence:KEGG:SPG_1105" /note="KEGG: spx:SPG_1105 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126288.1" /db_xref="GI:319762351" /db_xref="GeneID:10103691" /translation="MSIDYIRKTYGLTVKVGDQVSIRKGAGTWFDGLHGKLLRAQGQY LVVAGETWRGNFHPADVEPIQKDTP" gene complement(1714923..1715348) /locus_tag="Alide_1645" /db_xref="GeneID:10103692" CDS complement(1714923..1715348) /locus_tag="Alide_1645" /inference="similar to AA sequence:KEGG:Meso_1184" /note="KEGG: mes:Meso_1184 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126289.1" /db_xref="GI:319762352" /db_xref="GeneID:10103692" /translation="MTEAKQPEALRLADQLRALSFGGTCILAAAELRRQHARIADLEA QLSAIGAGGVEPLRPRQCLHGISEPSEWRDIETAPKDSGYVLLRGRREQDVASGYWLQ SAYAGNGAWIWPFVHMTPRFWAPLPPSPSSADEGGSNEH" gene complement(1715345..1715581) /locus_tag="Alide_1646" /db_xref="GeneID:10103693" CDS complement(1715345..1715581) /locus_tag="Alide_1646" /inference="similar to AA sequence:KEGG:SCAB_33391" /note="KEGG: scb:SCAB_33391 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126290.1" /db_xref="GI:319762353" /db_xref="GeneID:10103693" /translation="MTVRWIPTTDEVYSAIRRTHHQHMQVHGTITDLGEFSGCERIMT EWGLPGADYPLVKVDSKDGIASYWIAVITKDEEA" gene complement(1715612..1716016) /locus_tag="Alide_1647" /db_xref="GeneID:10103694" CDS complement(1715612..1716016) /locus_tag="Alide_1647" /inference="similar to AA sequence:KEGG:Daci_3203" /note="KEGG: dac:Daci_3203 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126291.1" /db_xref="GI:319762354" /db_xref="GeneID:10103694" /translation="MPVPPTTRDAITAALKECGPMSVPEIAEHLGLARNVINTCMTTA RKNHPGKFFRILRYRPQIGVSGRETPIYSASPGPDAPRPVFDKAEGRRSHYQRNRARL AAERYRRRGTEATWLSGLMPLARRNYPPTART" gene complement(1716016..1716663) /locus_tag="Alide_1648" /db_xref="GeneID:10103695" CDS complement(1716016..1716663) /locus_tag="Alide_1648" /inference="protein motif:PFAM:PF09588" /note="PFAM: YqaJ viral recombinase family; KEGG: dac:Daci_1915 exonuclease, phage-type" /codon_start=1 /transl_table=11 /product="yqaj viral recombinase family" /protein_id="YP_004126292.1" /db_xref="GI:319762355" /db_xref="InterPro:IPR019080" /db_xref="GeneID:10103695" /translation="MIHHDYEQGSEAWLAVRKGCITGSRFRDCRDKLKGGQPSKACIA YAMDTARERIGGCAPAKFQNAAMRTGTEQEPLARMAYESRTGNLVEEVGFFTTEDGLY GLSPDGLIDDDGVLEIKTMVSSDTLFTAVADGDLSAYMDQCLGYLWLLGRQWVDLVLW VPDLNYMAIHRITRDENAIEALEADLLAFAELVRKYEAKLRAALAANAPNAREAA" misc_feature complement(1716217..1716630) /locus_tag="Alide_1648" /note="YqaJ-like viral recombinase domain; Region: YqaJ; cl09232" /db_xref="CDD:197434" gene complement(1716660..1717478) /locus_tag="Alide_1649" /db_xref="GeneID:10103696" CDS complement(1716660..1717478) /locus_tag="Alide_1649" /inference="protein motif:PFAM:PF04404" /note="PFAM: ERF family protein; KEGG: mrd:Mrad2831_5739 ERF family protein" /codon_start=1 /transl_table=11 /product="erf family protein" /protein_id="YP_004126293.1" /db_xref="GI:319762356" /db_xref="InterPro:IPR007499" /db_xref="GeneID:10103696" /translation="MNETTQADVLELAPVERTAQPMTTRQAAVPAMAADSSALTQAII TAAHDPSVQIEKMERLLAMHERIAARDAEQQFNIAMAAAQSSMGRVSADAVNPQTRSQ YATYAQLDRHLRPIYTTHGFALSFDEGSGAPENYVRVLCYVSHTAGHTRTYRCDIPAD GKGAKGGDVMTKTHAVGSGKSYGKRYLLKDIFNVAVGEDDDDGNGAGANDTRAAEAQA KFDALMERIPKTTTDEAAAALWREGSGALADFKRRDLYDAFKDAVIKHRKGLKS" misc_feature complement(<1716903..1717253) /locus_tag="Alide_1649" /note="ERF superfamily; Region: ERF; pfam04404" /db_xref="CDD:190971" gene complement(1717590..1717691) /locus_tag="Alide_1650" /db_xref="GeneID:10103697" CDS complement(1717590..1717691) /locus_tag="Alide_1650" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126294.1" /db_xref="GI:319762357" /db_xref="GeneID:10103697" /translation="MKRMREFLSLYRAYRECDGLCAAARYAWIVSGG" gene complement(1717688..1717945) /locus_tag="Alide_1651" /db_xref="GeneID:10103698" CDS complement(1717688..1717945) /locus_tag="Alide_1651" /inference="similar to AA sequence:KEGG:Daci_1917" /note="KEGG: dac:Daci_1917 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126295.1" /db_xref="GI:319762358" /db_xref="GeneID:10103698" /translation="MSERDPIWDDIKAYKKEKFDNDRARFLANAQQQDDGGWVKHTEF HWSRTVAGKRLDYWPSRKKWQYEGSVQRGDVQRFIKNKERP" gene complement(1717942..1718136) /locus_tag="Alide_1652" /db_xref="GeneID:10103699" CDS complement(1717942..1718136) /locus_tag="Alide_1652" /inference="similar to AA sequence:KEGG:Smlt2731" /note="KEGG: sml:Smlt2731 general secretion pathway protein H" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126296.1" /db_xref="GI:319762359" /db_xref="GeneID:10103699" /translation="MKEAILIIAAALTIGVGAVAGNEAEADRQDAESLSSRDWAAREV CEGRPFEWQGDVLICHRERP" sig_peptide complement(1718074..1718136) /locus_tag="Alide_1652" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.700 at residue 21" gene complement(1718365..1718586) /locus_tag="Alide_1653" /db_xref="GeneID:10103700" CDS complement(1718365..1718586) /locus_tag="Alide_1653" /inference="similar to AA sequence:KEGG:505723" /note="KEGG: bta:505723 La ribonucleoprotein domain family, member 4B" /codon_start=1 /transl_table=11 /product="la ribonucleoprotein domain family, member 4b" /protein_id="YP_004126297.1" /db_xref="GI:319762360" /db_xref="GeneID:10103700" /translation="MADSTTTTPAKHDMDNMHPMMIEALCDHMPHIEPNTPPDEAERV RADIEYQKHRERWREDRALALQWRYGDGQ" gene complement(1719473..1719718) /locus_tag="Alide_1654" /db_xref="GeneID:10103701" CDS complement(1719473..1719718) /locus_tag="Alide_1654" /inference="similar to AA sequence:KEGG:Tgr7_1656" /note="KEGG: tgr:Tgr7_1656 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126298.1" /db_xref="GI:319762361" /db_xref="GeneID:10103701" /translation="MATHTLVVEFDGDGPAYAAGDTVLGGRLVAVDFGGNRLAVADEL LGTLQAVLDDVQDIDNDSCLSVGVGRQVRAAIAKATK" gene complement(1719747..1720067) /locus_tag="Alide_1655" /db_xref="GeneID:10103702" CDS complement(1719747..1720067) /locus_tag="Alide_1655" /inference="similar to AA sequence:KEGG:PLES_07901" /note="KEGG: pag:PLES_07901 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126299.1" /db_xref="GI:319762362" /db_xref="GeneID:10103702" /translation="MQKPMTLTGDGNVPAMPMTGAQVNHLRRLLAWMRCEYMLDEDMQ RGYLQGLQMCAAHGLADDERASELLAEKAEQINRVPIYVRQAVKMLTKALREHDKTSG IVEQ" gene 1720538..1721392 /locus_tag="Alide_1656" /db_xref="GeneID:10103703" CDS 1720538..1721392 /locus_tag="Alide_1656" /inference="similar to AA sequence:KEGG:VIBHAR_02019" /note="KEGG: vha:VIBHAR_02019 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126300.1" /db_xref="GI:319762363" /db_xref="GeneID:10103703" /translation="MKTKIALKYEGPALQGGAMDVYQTSSNMIAFTEFMVAAVKETYG DSAQAKAEVSGFERGSFVTNILFSVGGMASTIFTALTPDQLLEVVKGAFEVWKHLKGK PPAEVSQIDQQINVTNNDGQIINVRTESFTLVMNPKAADAVDKFVNQALSVEGVDALR LGNEAKPIAHVAANEAAYFVPVAAVVPMSDNTLQMILTVISPVFQDGNKWRFSDGGSS FSAGILDGDFLMRVDKGIERFGKGDVLEVEMRIVQSRTGQKVSVEREILKVLRHINPN EQVQQLLL" gene 1721458..1721697 /locus_tag="Alide_1657" /db_xref="GeneID:10103704" CDS 1721458..1721697 /locus_tag="Alide_1657" /inference="similar to AA sequence:KEGG:Vapar_6373" /note="KEGG: vap:Vapar_6373 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126301.1" /db_xref="GI:319762364" /db_xref="GeneID:10103704" /translation="MNQADVVLKIVEMAKVGGSLPPESAIAHVAALIAELDVHSASYE RDMERLVKIGATIWDLHSGPDGAYDPTWIPTFLRS" gene 1721814..1723001 /locus_tag="Alide_1658" /db_xref="GeneID:10103705" CDS 1721814..1723001 /locus_tag="Alide_1658" /inference="similar to AA sequence:KEGG:Tmz1t_0111" /note="KEGG: tmz:Tmz1t_0111 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126302.1" /db_xref="GI:319762365" /db_xref="GeneID:10103705" /translation="MDARDNPYVPGAGTPPPELAGRHEVLERAEVALTRIQRGRPSKS LIVVGLRGVGKTVLLVRFQNQAIDLGYQAALIEAHEGKTLPELLVPPLRKILLSLSAL KAAGEKGRQALRALRSFMGTVKVKWSDIELGIDPVMGVADSGDLEVDLADLFVAVGEA AAEKKTAVALCIDEMQYLSNKEFSALIMAVHKVSQMNLPIVVVGAGLPQILGLAGESK SYAERLFDYPKVGALSKEDAVLAIETPAKNMEVFYDTEALNRLVAVTKGYPYFLQQWG YEVWNIAESSPITLDDVDQATEAAIAALDESFFRVRFDRCTPSEKRYMRALAELGEGS KRSGDIADCLGVKVTSIGPTRSKLITKGMIYSPQHGETAFTVPLFDEYMRRVMPGNDW RKN" gene complement(1723072..1723551) /locus_tag="Alide_1659" /db_xref="GeneID:10103706" CDS complement(1723072..1723551) /locus_tag="Alide_1659" /inference="protein motif:PFAM:PF00565" /note="KEGG: vap:Vapar_4558 nuclease (SNase domain protein); PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein)" /codon_start=1 /transl_table=11 /product="nuclease (snase domain-containing protein)" /protein_id="YP_004126303.1" /db_xref="GI:319762366" /db_xref="GO:0003676" /db_xref="InterPro:IPR006021" /db_xref="GeneID:10103706" /translation="MLAAALLCLVVGISDGDTLTARCPTEDAAHPYQQVKVRLAGIDA PERKQPFGSRARQALADITFQKQARLDCVKQDRYKRSVCNVWVAPASAPDGPQTLDAG LAMVTQGMAWWYRSYSRDQTPEARGQYEFAETEARARRAGLWADRDPVAPWEWRRQR" misc_feature complement(1723114..1723530) /locus_tag="Alide_1659" /note="Staphylococcal nuclease homologues; Region: SNc; smart00318" /db_xref="CDD:128613" misc_feature complement(1723114..1723515) /locus_tag="Alide_1659" /note="Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds; Region: SNc; cl00140" /db_xref="CDD:193675" misc_feature complement(order(1723312..1723314,1723318..1723323, 1723414..1723416,1723423..1723425,1723441..1723443, 1723501..1723503)) /locus_tag="Alide_1659" /note="Catalytic site; other site" /db_xref="CDD:29137" gene complement(1723554..1724177) /locus_tag="Alide_1660" /db_xref="GeneID:10103707" CDS complement(1723554..1724177) /locus_tag="Alide_1660" /inference="protein motif:PFAM:PF07589" /note="PFAM: protein of unknown function DUF1555; KEGG: gsu:GSU1949 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126304.1" /db_xref="GI:319762367" /db_xref="InterPro:IPR011449" /db_xref="InterPro:IPR013424" /db_xref="GeneID:10103707" /translation="MKKTLATIALLAASAMPGQASASVYEFKTLTNECRIIATGEVVG PICGGTFGLDDVDGLRVGLSGSAGELQIRTDWYGGGAYHEGSYYNSGVTYTNFERVGT MVDLDAEYCFGWSGPRICRVNANFFSDNLLDILLGSLYILNDSDQVDMWSDGSGLWSG FYGSDSIYSRRQFFTGVWYEVPEPGSLALIGVGLLGMMGLRQRRVSR" sig_peptide complement(1724109..1724177) /locus_tag="Alide_1660" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.955 at residue 23" gene complement(1724965..1725153) /locus_tag="Alide_1661" /pseudo /db_xref="GeneID:10103708" gene complement(1725180..1725950) /locus_tag="Alide_1662" /db_xref="GeneID:10103709" CDS complement(1725180..1725950) /locus_tag="Alide_1662" /inference="protein motif:PFAM:PF00717" /note="PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: aav:Aave_1607 prophage repressor" /codon_start=1 /transl_table=11 /product="peptidase s24/s26a/s26b, conserved region protein" /protein_id="YP_004126305.1" /db_xref="GI:319762368" /db_xref="InterPro:IPR019759" /db_xref="GeneID:10103709" /translation="MHNCIESKAFLHYALMHSPAMDGRTFLKAVMDARGLNPHALGAK SGNPSLQSTVHRYLERKVNEPRRATLQPLADFLQVDVAAFFDADKARAELARLGLLAG PREESNITEGPAIRGLYPLISEVQAGMWTELCDNFARGDAEDWLPSTKDLGECGYMLR VRGKSMENPGARLSFPEGMVLHVRAHLDAVPGDFVIVRREGTGEATFKKFVMIDGHPY LEAINPDWPKELKYLPMQPGDVWCGVVVDASLGGLSRT" misc_feature complement(1725213..1725482) /locus_tag="Alide_1662" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature complement(order(1725327..1725329,1725456..1725458)) /locus_tag="Alide_1662" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 1725964..1726182 /locus_tag="Alide_1663" /db_xref="GeneID:10103710" CDS 1725964..1726182 /locus_tag="Alide_1663" /inference="protein motif:PFAM:PF01381" /note="KEGG: mbn:Mboo_1574 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain protein" /protein_id="YP_004126306.1" /db_xref="GI:319762369" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10103710" /translation="MQSISEILRGLRETLSQSEIARRTGISQSKLSRWESGEIAAGAD DALKLLALAKHPTPKKQAPQGHKEAAHG" misc_feature 1725985..>1726077 /locus_tag="Alide_1663" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene complement(1726206..1726451) /locus_tag="Alide_1664" /db_xref="GeneID:10103711" CDS complement(1726206..1726451) /locus_tag="Alide_1664" /inference="similar to AA sequence:KEGG:Chy400_3663" /note="KEGG: chl:Chy400_3663 secretion protein HlyD family protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126307.1" /db_xref="GI:319762370" /db_xref="GeneID:10103711" /translation="MNGISAEALDGKIEALNQVLAQLVTVLTPSQAAQAAAGLAVERH SFRDLVDYSTPEETLAVQDQVLDAYLGLLSTVAKRDQ" gene 1726611..1726979 /locus_tag="Alide_1665" /db_xref="GeneID:10103712" CDS 1726611..1726979 /locus_tag="Alide_1665" /inference="similar to AA sequence:KEGG:Pcar_1084" /note="KEGG: pca:Pcar_1084 transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126308.1" /db_xref="GI:319762371" /db_xref="GeneID:10103712" /translation="MPSAVIQPAQLTLNFEPGLIDRYGSLRECVATGVYQRGLKRVAI DLDQAPSNLSVQLSEDTSRHFSVDSLERYIEKTGDKTPVLYLVERFLAPELQNKGIKQ VEAMKAQLQAMLQQLDGVVQ" gene 1726976..1727167 /locus_tag="Alide_1666" /db_xref="GeneID:10103713" CDS 1726976..1727167 /locus_tag="Alide_1666" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126309.1" /db_xref="GI:319762372" /db_xref="GeneID:10103713" /translation="MTKKPTKVLSINGRKAATLAPAGLPKLTRAQFAVPVNGPITNAS MPNAPQGYAWPWLATPPRG" sig_peptide 1726976..1727068 /locus_tag="Alide_1666" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.676) with cleavage site probability 0.373 at residue 31" gene 1727169..1727369 /locus_tag="Alide_1667" /db_xref="GeneID:10103714" CDS 1727169..1727369 /locus_tag="Alide_1667" /inference="similar to AA sequence:KEGG:SCAB_27931" /note="KEGG: scb:SCAB_27931 neutral zinc metalloprotease" /codon_start=1 /transl_table=11 /product="neutral zinc metalloprotease" /protein_id="YP_004126310.1" /db_xref="GI:319762373" /db_xref="GeneID:10103714" /translation="MHSEQDARIAGLIDERRKVAARLADLDMQIAQAVGDREGMRRAQ REMYAQVEARKAARFAAWEASH" gene 1727369..1728274 /locus_tag="Alide_1668" /db_xref="GeneID:10103715" CDS 1727369..1728274 /locus_tag="Alide_1668" /inference="similar to AA sequence:KEGG:SSON_1580" /note="KEGG: ssn:SSON_1580 unknown prophage protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126311.1" /db_xref="GI:319762374" /db_xref="GeneID:10103715" /translation="MANQWLRLWHDMPTDPKWRTIARHAKQPISLVQAVYLHLLVDAS RNVTRGHATVTYEDLASALDCDEQQISAILEAMQGRVLDGMRLVGWDKRQPKREDSGD DERGVKSAAQRKKEQRQREDNAMNSVVETVFDDMRDTKDDAQCHAVSRNVPLDKDTDT DKEEPNGSSSPASLTTDHGQQHHAASRDVTPPCPHIRLIELFGELLPSLPQPKPELWT GKSADAMRARWKWLLTARRKNGQRYATTTEEGISWMVRFFEYVGKSDFLMGRRGEFQC TLQWLVKAENFSKVIQGNYDNREAG" gene 1728271..1729656 /locus_tag="Alide_1669" /db_xref="GeneID:10103716" CDS 1728271..1729656 /locus_tag="Alide_1669" /inference="protein motif:PFAM:PF00772" /note="PFAM: DnaB domain protein helicase domain protein; KEGG: bvi:Bcep1808_1163 DnaB domain-containing protein" /codon_start=1 /transl_table=11 /product="dnab domain protein helicase domain protein" /protein_id="YP_004126312.1" /db_xref="GI:319762375" /db_xref="GO:0003678" /db_xref="GO:0005524" /db_xref="InterPro:IPR007693" /db_xref="InterPro:IPR007694" /db_xref="GeneID:10103716" /translation="MNRDEYAEALMHALEAEACVIGALLLDNGSWDRLGDKLRPEHFH DDKHRMVFAEIARQLGAGKPCDVVTVATALGDRITLQDVHELAQYVPSAANLRRHAEL VIERFKSRQLQAVSAQLMELSQDHGTSIADRVDRAQAQLGKLIDEAPRDEWVSAYEGM TIHTGVLEARAEGTIRAMPTGLHDLDEYLEGGLRPGELVIVGARPSMGKTALGLTIGV HMAAEYTVGLLSMEMSHSEVNDRLTAMLGRVSLSSVKRPARGEGLAWDRVMDGVEHAK TLNFHTSDQGGLNINQVRSKARNLKRVHGLDVLVVDYIGLMSGLDAKANRNIQLEEIS RGLKGLAKELNICVLCLAQLNRKSEERPEQMPMMSDLRDSGAIEQDADVIVFIKRPIM ANPDLGPDWEHYAKLRVAKNRQGRCGDLHLSYTGEQTRFSGWAGPAPSKSTPTVQRGP VRRGMDAGERF" misc_feature 1728325..1728585 /locus_tag="Alide_1669" /note="DnaB-like helicase N terminal domain; Region: DnaB; pfam00772" /db_xref="CDD:189711" misc_feature 1728328..1729566 /locus_tag="Alide_1669" /note="replicative DNA helicase; Region: DnaB; TIGR00665" /db_xref="CDD:188070" misc_feature 1728817..1729542 /locus_tag="Alide_1669" /note="DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984" /db_xref="CDD:29985" misc_feature 1728880..1728900 /locus_tag="Alide_1669" /note="Walker A motif; other site" /db_xref="CDD:29985" misc_feature order(1728895..1728900,1729204..1729206,1729327..1729329, 1729435..1729437,1729507..1729509,1729540..1729542) /locus_tag="Alide_1669" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29985" misc_feature 1729195..1729206 /locus_tag="Alide_1669" /note="Walker B motif; other site" /db_xref="CDD:29985" misc_feature order(1729219..1729224,1729243..1729251,1729324..1729350, 1729432..1729437,1729477..1729482) /locus_tag="Alide_1669" /note="DNA binding loops [nucleotide binding]" /db_xref="CDD:29985" gene 1729660..1730163 /locus_tag="Alide_1670" /db_xref="GeneID:10103717" CDS 1729660..1730163 /locus_tag="Alide_1670" /inference="similar to AA sequence:KEGG:Aave_1760" /note="KEGG: aav:Aave_1760 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126313.1" /db_xref="GI:319762376" /db_xref="GeneID:10103717" /translation="MKDLTLKMIHDRCDEVVDCWIWKDAVGQHGYPIMRRRPGGCQLV RRVVVALDGRPAAARQPVTCTCDEKRCCNPAHLKPSTPSAVGKAAAAKGSFSTKARAA RIAQWRRSSGATKLTLDLVREIRSSEETGPVLAERYGVNRSLIGSIRCGTAWKDYSNP FSGLGGR" gene 1730167..1730361 /locus_tag="Alide_1671" /db_xref="GeneID:10103718" CDS 1730167..1730361 /locus_tag="Alide_1671" /inference="similar to AA sequence:KEGG:SACE_5054" /note="KEGG: sen:SACE_5054 mannitol dehydrogenase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126314.1" /db_xref="GI:319762377" /db_xref="GeneID:10103718" /translation="MAEYDKQVAHLTRLALTPGWWQYARRRALELEADMPGIRDAVRQ QVEASGYRPPPEERGEWWLP" gene 1730361..1730693 /locus_tag="Alide_1672" /db_xref="GeneID:10103719" CDS 1730361..1730693 /locus_tag="Alide_1672" /inference="protein motif:PFAM:PF05866" /note="PFAM: endodeoxyribonuclease RusA; KEGG: bav:BAV1307 phage endonuclease" /codon_start=1 /transl_table=11 /product="endodeoxyribonuclease rusa" /protein_id="YP_004126315.1" /db_xref="GI:319762378" /db_xref="GO:0000287" /db_xref="InterPro:IPR008822" /db_xref="GeneID:10103719" /translation="MLPWPPKELSPNARIHWSKLARAKKAYRAACAWTATEQGAQRVA ADKLHLSLEFYPPNRRAFDLDNALARMKSGLDGLADVLGVDDRHWSLSIARVEEIGGY VKVEVRRA" gene 1730686..1731207 /locus_tag="Alide_1673" /db_xref="GeneID:10103720" CDS 1730686..1731207 /locus_tag="Alide_1673" /inference="similar to AA sequence:KEGG:Bpet0967" /note="KEGG: bpt:Bpet0967 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126316.1" /db_xref="GI:319762379" /db_xref="GeneID:10103720" /translation="MPEIVLVRQEPAQITEQDAAVARRVIFGIVDGLGDKGRKQWRRL WSRIMGLEPGEMMEITTVQPRLGWYHRKHMALEQAVFEAQERFEDFESFRTWLKVGAA FVDWFPGPKGGVIPVPRSISYAKLEQGAMEQFHNDAVAFLRTEHAGRTLWKHLSERQR IDMIETILGGFNE" misc_feature <1730950..1731198 /locus_tag="Alide_1673" /note="Protein of unknown function (DUF1367); Region: DUF1367; pfam07105" /db_xref="CDD:148613" gene 1731204..1731704 /locus_tag="Alide_1674" /db_xref="GeneID:10103721" CDS 1731204..1731704 /locus_tag="Alide_1674" /inference="similar to AA sequence:KEGG:Aave_1763" /note="KEGG: aav:Aave_1763 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126317.1" /db_xref="GI:319762380" /db_xref="GeneID:10103721" /translation="MMRRTPLRSRKDTAVRVDRETLLAARAARTMAEARPRAATMADA GAAARIIEKAKPWRSEAYRRAVASLPCVICGVHGYSQAAHGSEGKGMGIKACDTTLFP ACASRPGVLGCHHKLDQGALFTKAVRRELEPVWAADTQRRIHAMGLWPAGVPYPHEDQ GSHRDN" misc_feature <1731369..1731563 /locus_tag="Alide_1674" /note="Protein of unknown function (DUF968); Region: DUF968; pfam06147" /db_xref="CDD:148009" gene 1731673..1732185 /locus_tag="Alide_1675" /db_xref="GeneID:10103722" CDS 1731673..1732185 /locus_tag="Alide_1675" /inference="similar to AA sequence:KEGG:Aave_1697" /note="KEGG: aav:Aave_1697 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126318.1" /db_xref="GI:319762381" /db_xref="GeneID:10103722" /translation="MKTKGATVTTEVQTKAITSTQRIYDAVCELHALEQVVTRETVAE LTGIKLTVVDDRLGALVDNEKIKRILRGVYVPVERHPPARAISKSVLPDGMVMIEIGD EVLHLTPREDRALALVQSGAATQAVAIESSRQTSMLVAEMAAELQRIKREYAALKAHK EDSLQLALGV" gene 1732241..1733017 /locus_tag="Alide_1676" /db_xref="GeneID:10103723" CDS 1732241..1733017 /locus_tag="Alide_1676" /inference="similar to AA sequence:KEGG:Aave_2352" /note="KEGG: aav:Aave_2352 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126319.1" /db_xref="GI:319762382" /db_xref="GeneID:10103723" /translation="MPNPTAGKKPAPPKTDTAAPAASGKDAGIAAPDWERIELDYRAG IKTLRQIADEHGITHGAINKRAKRDGWERDLSGKIQAKADALVSKAAVSSEVSKESKI AEKLVIDANAQAVAEVRLAHRRDIQRARRLTNALLDELEQETDRDTLEQLKKLGELMF EPDEKTGRDRLNELYQAVISLPERSKTMKTLAESLQKLVDMERAAFGMDKDQPREADP LAALLARIATGNGNGFAPVASDPERPSSSLLVRADPADED" gene 1733020..1734627 /locus_tag="Alide_1677" /db_xref="GeneID:10103724" CDS 1733020..1734627 /locus_tag="Alide_1677" /inference="similar to AA sequence:KEGG:Aave_2353" /note="KEGG: aav:Aave_2353 terminase large subunit protein" /codon_start=1 /transl_table=11 /product="terminase large subunit protein" /protein_id="YP_004126320.1" /db_xref="GI:319762383" /db_xref="GeneID:10103724" /translation="MLMPVRNARLNRLPDSAQELERCLTDPEWRLFSGCLYKIMVKGD SKDGQEGEAFSMPFVPNRAQRRFIKRLWHRNIILKARQLGFTTLIAILWLDHALFNAD QRCGIIAQDREAAEAIFRDKVKYAYQNLPEEIRERFPLARDSASELLFAHNNSSVRVA TSMRSGTIHRLHISEFGKICAKFPDKAKEVMTGSIPAVPTTGILVIESTAEGANGEFY DLSKRSQALHYSHQKLTPRDYRFHFYAWWQEPNYRMDATQVSISREMHDYFDGIEQEM ECQIDPEQRAWYVATQQADFPGREERMWQEYPSTPDEAFQQSTEGHYYAKAMVELTKR GGITSVPVLDLPVYTFWDIGRSDGTSIWFMQSLRGEDRFIDYYEEHNEDLRHYARILQ EKGYLYGAHYLPHDADHKKLSDTNRSTREQLQALLPGQSFRIVPVITQLVTGIHAVRK HIKGAWFDKERCAFGLERIRGYRKKFNQAQGRFIDEPDKSNGCSEGADALRQWAQAKD SGLFAPSDDGYGINNDYQEPEAPDWRM" misc_feature 1733188..>1733412 /locus_tag="Alide_1677" /note="large terminase protein; Provisional; Region: 17; PHA02533" /db_xref="CDD:177372" misc_feature 1733245..1734450 /locus_tag="Alide_1677" /note="Terminase-like family; Region: Terminase_6; pfam03237" /db_xref="CDD:146059" gene 1734634..1736901 /locus_tag="Alide_1678" /db_xref="GeneID:10103725" CDS 1734634..1736901 /locus_tag="Alide_1678" /inference="similar to AA sequence:KEGG:Aave_1700" /note="KEGG: aav:Aave_1700 phage associated protein" /codon_start=1 /transl_table=11 /product="phage associated protein" /protein_id="YP_004126321.1" /db_xref="GI:319762384" /db_xref="GeneID:10103725" /translation="MRYLKPPANADMGQALTLREFAAIIDEAIDQPPWRAQADIEADY VDGNQLDSKLLQRLKAIGIPPAKENIIGPAIAAVCGYEAKTRTDWRVTPDGDPDGQDV ADALNYRINQAERHSKADVAMSDAFRPQASVGLGWVEVARSSDPFGYGKRCRYVHRNE IFWDMRAKEKDLSDAGWLLRERFIKKSRVAAAFQEKADLVNQAEAASGMGGYGGYVVE GGVSTGLLAGAETSRAWTSREQAWYRKESDEVCLVELWYRRWVSAVVLRLRGGRVVEF DLSNPMHQAAVASGQGVLERTTVARVRRSFWMGPYCLHDGPSPYPHPYFPYVPFWGYR EDMTGVPFGLVRDMIFPQDNLNSTIAKLRWGLAATRTERTKGAVAMTDEQFRRQIARP DADVILDAEHFKGNSGARFEVKRDFQLNAQQFQMMADSRAALDRVSGITAAMQGRQGT ARSGLQEQTQLEQSQTSIADLMDNFKEGRALVGEMLLAMEIEDLGSEESSIVIEGDVL NPPRTVVLNHPEIDLETGIPYLSNDVQRTRLKVALEDVPSTSSFRVQQLNALSEAAKS MPSEIQAVVLPFLIDLMDLPRKKQVVEAIRTAQAGGQADPDAIREQVKQELMHDLKER ELALKERIGDAQIEKLVREAVQVGVQSAFSAMQAGAQVAQMPMIAPVADAIMQGQGYQ RPAAGDDPNFPTAQVQAAVQMKEPYLQGQGRPADDGVQEVRENTSPQFPPVPQEPGTG QRGIETLSPGDNLPA" gene 1737077..1738075 /locus_tag="Alide_1679" /db_xref="GeneID:10103726" CDS 1737077..1738075 /locus_tag="Alide_1679" /inference="similar to AA sequence:KEGG:Aave_1702" /note="KEGG: aav:Aave_1702 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126322.1" /db_xref="GI:319762385" /db_xref="GeneID:10103726" /translation="MEHRLTTEAQQLLDAAFAGKLDLDADASQNSAAAAAAEGAAGQR TEEPKTNAANDKQAGAAAQDDEPAGAPIASKSGAYTIPYEKLTQARQERDTLKAENEQ LKAQVTQLTAAQAQNLAAAQEQAQARADAGQAPTEADKNLAVAQAAAAQGVDMALFGD FSEESIANGVAALVEQRAAALVDARLKDALAPFQQREARSSADAHTQAIYAVHKDADE IYESAEFKKWMGEQPGYARAAIEHALANGEAPQVIEVFSTFKAATGKTAPADAVTKAL EAVKVQPPASLSELPGAVGTSDAERVTALADDPAKLLDFMAGLSPEKQNRLMNSVV" gene 1738144..1739433 /locus_tag="Alide_1680" /db_xref="GeneID:10103727" CDS 1738144..1739433 /locus_tag="Alide_1680" /inference="similar to AA sequence:KEGG:NGK_0673" /note="KEGG: ngk:NGK_0673 phage associated protein" /codon_start=1 /transl_table=11 /product="phage associated protein" /protein_id="YP_004126323.1" /db_xref="GI:319762386" /db_xref="GeneID:10103727" /translation="MTKTVVGAGSPNAQFVQAAGLFAQSMQRNSTLNRMVGKMPSSEG EVNQVLRKQTSTDMPIVRTVDLSRGKGDEVEFHFVQPVGAYPIMGSRMAEGKGTGISL DKARVRVNQARFPIDVGDTMTDIRSPVDFRKIGRPIAQSLMDAYQDQSMLVHLAGARG FHDNIEWRLPTADHADFAEMAINEVKAPTANRHFVADGDAIKPFTVVGGEIDLQTTDL LDMDIVDSVRTVIESIALPPPAIKIPGDKVAEDSPLRCLLVSPAQYHAFAQDPNFRQF QANALARASKAENHPLFLGEVGLWNGVLICKMPKPIRFYAGDTIRYCASKTSETESSC VVPAGFGTTHAVDRALLLGGQALAQAFASSRHGGMPFFWKEKGFDHDDKMELLIGAIQ GLAKVRWLVDQGGGTKHFTDHGVFAIDTAVPIIGARQ" gene 1739505..1739981 /locus_tag="Alide_1681" /db_xref="GeneID:10103728" CDS 1739505..1739981 /locus_tag="Alide_1681" /inference="similar to AA sequence:KEGG:Aave_1704" /note="KEGG: aav:Aave_1704 phage associated protein" /codon_start=1 /transl_table=11 /product="phage associated protein" /protein_id="YP_004126324.1" /db_xref="GI:319762387" /db_xref="GeneID:10103728" /translation="MANITKKANPRVNVGASPWGNAHGLLYTLQTAANGGAIGADSGA AIAQGDKVRLGVIPAGSTLLDSLAVVSTAMTAAVVGDLGFEYVDGVDDAKVPQDADYF GASLALNATGRLRNATTNPPVTLPKDAWLVLTTGGAANAKASRVDVVLTVASEGTA" gene 1740000..1740488 /locus_tag="Alide_1682" /db_xref="GeneID:10103729" CDS 1740000..1740488 /locus_tag="Alide_1682" /inference="similar to AA sequence:KEGG:Aave_1705" /note="KEGG: aav:Aave_1705 phage associated protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126325.1" /db_xref="GI:319762388" /db_xref="GeneID:10103729" /translation="MKQAGSPGLFSIQPKESAMNLTRITYLGRKTYREKISNNTWEQG DTKLVTTDAAKRLLRFAEFESAKQEAERAQAHVGKKDEGEQKPTDPELEAAMLRQQEA ERAQAQERQQVESMLLTVESMDKPALEEYARKYEVELDKRLGVAKLRAEVSTLIEQFG VR" gene 1740490..1741155 /locus_tag="Alide_1683" /db_xref="GeneID:10103730" CDS 1740490..1741155 /locus_tag="Alide_1683" /inference="similar to AA sequence:KEGG:Aave_1706" /note="KEGG: aav:Aave_1706 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126326.1" /db_xref="GI:319762389" /db_xref="GeneID:10103730" /translation="MNLEQLVERFRIDADDLVEPYLWQPEWVVGWLNEAQDEAAVRAR LLLDDYTPGLCEIAVEEGRGSYPLHSKTYEIAHLQFESTGRPCELDMVSREKLDRIEP RWRQLAADAPRWAIQTDTRLRLVPAPREAGLLRLEAYRLPMRALAQDRDKPEIHEAHH LHLVQWALYRAFSKPDTEVIDPTRAAQALDNFERYFGLRPDADLRRSTRQDEVQANVS HIL" gene 1741165..1743267 /locus_tag="Alide_1684" /db_xref="GeneID:10103731" CDS 1741165..1743267 /locus_tag="Alide_1684" /inference="similar to AA sequence:KEGG:Aave_1716" /note="KEGG: aav:Aave_1716 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126327.1" /db_xref="GI:319762390" /db_xref="GeneID:10103731" /translation="MYGFNPEKHKDQPNAELPKLGFKPRKSAPADAAAPELPASTAPG RGFRPGMKEEMAAPSVGLGFRPGMGGPVTTDALPGLGFQPFKDAMRAQAQNQAPDSIP AMVKPGEFVLPPDTVHAMGGAQVLQGVVDATHTPAPEAAIVPRGFKPRAYFADGGLAG PKREDYVGNAFKTMEQQRAASAAQAQAAGAQAEADGAAAASRKVAQTGMAPAPNSPSN TFPGNRLQGTSGFSGAPMGAAPAAGAAPVPAPAAPATAPTAAGFMPGTRAVFNESGKA IGDLASQGRYGAAAGEAARAALAYAPAVADDVIGGAARAVLPAVVDAGKQFLGMGNTP AVPPPAASTAVARPGASPVAPAAAPATAAVPASSAPATSSGDVTRVGNSYSGTNVSGD ITVNGQAPAGGFMVADAPQARGFRPGMGSSAPAPGQGFGFRPGMGAAADGPAPRLGFG PGSELARIQAQAAQPGFSGVIGQQGGNGNMWSRTPEQQRRDAEVQASSIHRPTAAIGA NALRSLDAQDLEGVRGANALAQENVRQAGGLQREGMQQQGANTRAAMSSAVDQQRVNQ EGRRVDSQVEAQGFANRQAAQQEQLRAILADPKAPITQKMEAQRTLSALAGQGDRWKP VALQGGTDAQGNKTESILGAVNERTGEMRRMDGGAQGGGTMPPAGAVAALRADPKRAA DFDAKYGAGASQRVLAQR" gene complement(1743278..1744084) /locus_tag="Alide_1685" /db_xref="GeneID:10103732" CDS complement(1743278..1744084) /locus_tag="Alide_1685" /inference="similar to AA sequence:KEGG:GBP346_A1728" /note="KEGG: bpr:GBP346_A1728 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126328.1" /db_xref="GI:319762391" /db_xref="GeneID:10103732" /translation="MSTAAETQPSMPLRFARHIVGMMILALASPYVWYGSQGALTWAS TWITPLVIAGVAFGLYALFFTKRAKAAWPGRFFMLAWVLLALVVAAPYLETFNQKRAA QQVPVQQEQPATEPAAQAAQPNFFDQFDHPAPRSREAYAARVKALRSAGEAGDLLIVE VRQPSREDNSLGRWSTLDVGRVEAEQTWWIANGIVWLHVANHSKFNMNVIQFEYAPGL CGNAAPESYASYNLPLKQAITPGTEALIRFAAGDVVHGGDGCLNVTGILG" gene 1744215..1745294 /locus_tag="Alide_1686" /db_xref="GeneID:10103733" CDS 1744215..1745294 /locus_tag="Alide_1686" /inference="similar to AA sequence:KEGG:NE1381" /note="KEGG: neu:NE1381 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126329.1" /db_xref="GI:319762392" /db_xref="GeneID:10103733" /translation="MRKISHKRQMWLLRRQRVWCKGHKFLAGVAKTKTKPKIKRDVLV APGYFCLASSNNVRSEASAQFLAFLRSIRDFRGSGLCIDMSRVQRMVANATLLFKAEL SYQIQRGVSVGGVMPRKARTHQVLTQTGLTRMLGLPECKHVDREDTVHWRHASGSWSV TQPSHLSSLLGGNEQQNALLYTGMIESVANCIEHAYREHPKRRAFGAGHDGWWGFQQL RDGVLSTCICDLGIGIARSLPLKLADEPTLYKKLVALFNHLRGDDVRGILAAIEYGRS STGLVQRGKGLRDAHRVIDDAGEGHFHIFSNQGMYIYRKERGKEPTSGTRRLAESIEG TIYYWQYPLQSQGAVGVIPIGGVLS" gene 1745291..1745614 /locus_tag="Alide_1687" /db_xref="GeneID:10103734" CDS 1745291..1745614 /locus_tag="Alide_1687" /inference="similar to AA sequence:KEGG:Hsero_1548" /note="KEGG: hse:Hsero_1548 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126330.1" /db_xref="GI:319762393" /db_xref="GeneID:10103734" /translation="MTTLSVASQFSRYPGGRFKRISENSGEQFREDVLLPALQKDGLV VVDLDGVVGYGSSFLEEVFGGVVRAKRWKSREEVNKHLRIASEKESWLREANMYIDAA LALLK" gene 1745632..1746114 /locus_tag="Alide_1688" /db_xref="GeneID:10103735" CDS 1745632..1746114 /locus_tag="Alide_1688" /inference="similar to AA sequence:KEGG:Hsero_1549" /note="manually curated; KEGG: hse:Hsero_1549 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126331.1" /db_xref="GI:319762394" /db_xref="GeneID:10103735" /translation="MLFDGFLKYLPSVLVVLGWAIAYKLQALQARRKLLREEVEKTRQ AVEKLREIALQFHVNVYDPEKRGAIVIALTDIERRYGMFPEIARARSECSFNAVDISK TRVDAKYLTELRQAITLEHFEDPESAPLQHGHEQLERITVAASALIGELDKVLVAALD " gene complement(1746187..1746852) /locus_tag="Alide_1689" /db_xref="GeneID:10103736" CDS complement(1746187..1746852) /locus_tag="Alide_1689" /inference="similar to AA sequence:KEGG:lpl0182" /note="KEGG: lpf:lpl0182 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126332.1" /db_xref="GI:319762395" /db_xref="GeneID:10103736" /translation="MTKSGNTSAFRVIRIDGSILAEHYYLAPDDECYCLGEYQPGGGY GAGPVNNLISNFKKSVDRKGRSEYVYKERAIAQVASYVGQVLKPEVLERFTVVPVPPS KAKTDPLYDDRLVQALNLVRPKLDVRELLLANRSMQAHHEYQSGVKRPTPDDLCQHIH INEACLTTPLREVIMLFDDVLTNGTHFKACQRIIRERFPDRRVFGLFIGRSKRPDPLE DFD" gene complement(1746806..1747702) /locus_tag="Alide_1690" /db_xref="GeneID:10103737" CDS complement(1746806..1747702) /locus_tag="Alide_1690" /inference="protein motif:PFAM:PF02481" /note="PFAM: SMF family protein; KEGG: amc:MADE_00299 smf protein" /codon_start=1 /transl_table=11 /product="smf family protein" /protein_id="YP_004126333.1" /db_xref="GI:319762396" /db_xref="InterPro:IPR003488" /db_xref="GeneID:10103737" /translation="MITSELFAQQAVSPALELGAYEELWSQDGQSFKTLAELFRKSHN DLPSQFVSSDQAIKRAREVLEIFRKKHIEDAGFVVQGTLEYPEELRSARHPVQFLYYR GNLDLLYTPWRVALVGSREASDEGIRRARRLARCLVADGVVVVSGLAKGIDTAAHTAA LEAGGQTVGVIGTPISEVYPRENSELQEHIARNYLLVSQVPVIRYMQQTPKWNRLFFP ERNATMSALTQATIIVEAGETSGSLTQARAALEQGRKLFILNNCFERGLKWPARLQAA GAIRVSDYDEIRQHLGISGNSH" misc_feature complement(1746854..1747483) /locus_tag="Alide_1690" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene 1747850..1756453 /locus_tag="Alide_1691" /db_xref="GeneID:10103738" CDS 1747850..1756453 /locus_tag="Alide_1691" /inference="similar to AA sequence:KEGG:CtCNB1_2656" /note="KEGG: ctt:CtCNB1_2656 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126334.1" /db_xref="GI:319762397" /db_xref="GeneID:10103738" /translation="MADNYFDQFDSPAATESASKGNYFDQFDEKPAARSAARSAGDSA IAAGTGVIQGVKMLTDVAGADNAVSRTLGNASDALTDLESPYRKAQKQERAAKIKAAE ATGSTWEEIKAHVGAFADAPLDTTLNALGTSAPTLAAAALSGGSSVAAQIAARAAPVV LGVAQGAGNIKGQVHEAVKQKHLEAGVSEAEATQRADAAQAYDGSNLGSIALGGALGG LAGGTGAEAAARRLLGRKVAAEAAEHAAPGVIRSAVTGAAKEAPMEALQGGQERHASN VALQGEGFDVPTWQGVAGQAALEGLAAAPMGGGFGVAEGMHARGRQTSDPISEGVAAR QAAEAAAADAQAKADAAVPPWTTDLGAADPNAQAATAAATDANAPRVAEAQFETQPGA APDYGNGIDYQREFDTGGMELAEGEPRALGFNPLAGTPTVFADGSVALNGEQEFQHRT GVASPSQRMGLDARTGSLSAAAVQAVDSGAHAQMQQAAAQVQAAQEAKRAKPTQKKEQ EPQAMPDVDPQTGEIAQGPGMAAWSDADLSTAFRGAQSRDVRLQLAKEMQRRREQRAL QAELDAEQSGTVPGADGTDTAFASVTEDAGALPARAATTTEGQMNGAQADQAQQAAAQ PPQGRAAPAGQPAARGLSDGAPAQDVGAQAAPAAGPQAQAQGGEVEALRQKLRDVEAR IIAAAPGAMGQGGGDIEAAMKSRKVPVTLKAQRKKLVDQVRTAQATEVKTFAPETGTL GIPRADMPQVPSQSHGGLVKHLNAQGIAHEIMTVDAAELKPTQAEYSPAKVEAAKTAG GDRAVIVSNDGHIIDGHHQAMAAAQEGKPVKAIVLDAPVDQALEAVKASPSAQASKPE TPDYEAQVAEMLDPASPRTSVTIAAGHEVPESVYRAQTSLRAAPGYTMKPGKDGTVIL TSTGKKSETSRKASNGEPPASPSARIEDFGETLRGARKMLYAEAYADGMAKAKELDAK AHPLSKTWPDPDYAKLLEGGAAPEAVALVRALRDAVPTKPQSSWKLKGWTQKMQALRG FAEDILAGRAEAAAVTRELERAGISDVANQAALYEAVGHDRSLKGVILSKGLYSMYDG VRHDPPRTIWTVAREAKASALGNWPRELAKGDTREAAIAAFKQRAAELLAEEQAPARG ATFEIYGKRAGGARAFFIGKKIGRNVAELKGGFADLKTARQYKADHQAELEDLLAKYK AVPPVRNAQNAPRIGQDYRKGADVTPEQFQEAFGFRGVQFGNYVEGGRRQHDLNRAYD ALMDLAGVLELPPRALSLGGRLGLAFGARGSGGVDAAAAHYERGEVVINLTKRQGAGS LAHEWWHGLDNYFSRQRGDGVGMMTEESRRGDGVREEMRAAFRDVVSAINRTGMQERS RKLDDRRTKEYWTTKPEMSARAFESYVIAKLQDQSAGNDYLANVVGDGAFALEGAYPY PTAGELPQIREAFDAFFQTVETRRGEDGAEVLFRRDAAAPFDYDAMQRVVLGKAPGFS AVAREQAVSSVRGTVDVIRAAWGSNAPEVVVAFDMQDTAVPEAARQADLRQRSGGARG APEGFYYRGKAYLMASRLNTPADATRVLLHEVLGHHGLRGKFGKDLDNILNQIATMRK DEVAAKVQEYGLRGVQGLNVREAAEEVLAEMAEKNPQLHFVRRAVAAIRNWLRAHVPG FKNLRLTDDDIIQAYILPARGWVERGGREQAAGGPHDRVVNFARHPGFSAAVDAAVKA GTMGETGGRAHIEIGTLSPALAAAGIPAGDLKTSAKVLQKVVFDHGVPPSVVKRIPEL LERPVMVFHSATVEGSFVAVTSEMVRGAPLIVAISPETTTGGVSLNFVPSLYPRDDLQ AIQRWLNATKPGEQLLTYLDKEQSPAWFGSTRLQLPGEFRTTQGLQSRNIATQADVVN AAGGEGDIPMFSRSRMAELKDGALAQIDAALSHPGKVSLWDKTVGTMRHLAERAPAFK PVFESAQRQIDDVAMLANDAADVAPRLLPRVDKLRDLAKRPISAEDNKAVARPLFEGT LLWGRDLDGQPALADDLQKKYANLGADEKAQLLLRAGRIDPGVLAMWRGMPLAQFEAA VSSRFESKVIKAGVVWEPRELRAMFGLNDQQMGLYQEARGAIDRSIDMTARADMLRSL GEKYTPMRAATLEAPSLTDALTLLVETLEQEAQATPDAREHLADLMHGLRQRYDKARE LMAQGYAPLSRFGRYTLDVVDARGERLYFGMYESMADSNRAKIQMASAFPGATVSQGT MSAEAYKLFAGITPESLELFGNMLGLDAEGNKAQDKAFQQYLQLTKNNHSALKRLIHR KGIAGYSDDVGRVLASFIYSNARQAAAGLNAGVMDSAINAIPKEQGELRDVAMGLRSY IQDPQEEGQAVRGMLFAQYLGGSVASAFVNTTQPFAVTLPWLSQFGGMKKAGTQLARA LKDMGTRGFQYQSDLAHALKQAEDDGIVSPQEIHQLMAQARGAGALRVGDGTRRGNAR AAAANAWERTKVAWGQPFALAEQFNRRSTFIAAYRLAQQQGMDKPAEFARRAVLETQF LYSKANKPRWARGAVGGTLFTFKTYSVSYLELMQRMWTQGGPEGKRAVGWAVAMLLLM SGAGGLPFMEDLEDLIDGAGQLMGYNVSAKQWRKQVLRDVLGKELADFVEQGVSGLPG APVDVSGRLGMGNLIPGTGLLMTKQSRERDLLEVAGPAGDLVARGFSGARKLITGDVA GAALEVAPTAVRNAAKGADMASSGMYKDTKGYKVIDTTLDEALAKAIGFQPRSVAEVQ EANSFMQRSKSFYTQTSSDIKAQWAQALFEKDGAALERVRRRLEAWNRDNPEQRIVVR MPDVWKRVREMGKDRTQRIAAAAPKALRQQMREMAREAG" gene 1756529..1756930 /locus_tag="Alide_1692" /db_xref="GeneID:10103739" CDS 1756529..1756930 /locus_tag="Alide_1692" /inference="similar to AA sequence:KEGG:RER_25240" /note="KEGG: rer:RER_25240 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126335.1" /db_xref="GI:319762398" /db_xref="GeneID:10103739" /translation="MANKFYPKGAEKILSAQVNFLTHTISAVLVPSSYTYSDSHEFLS DLGTVVGSAVDLAAKSITGGVFDADDPAFGALAPGNTAKALALFRNTGSAATSPLLCY LDEITGFPFSTNGGDVTVPWSNGPFKILSLV" gene 1756940..1758016 /locus_tag="Alide_1693" /db_xref="GeneID:10103740" CDS 1756940..1758016 /locus_tag="Alide_1693" /inference="similar to AA sequence:KEGG:PLES_13611" /note="KEGG: pag:PLES_13611 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126336.1" /db_xref="GI:319762399" /db_xref="GeneID:10103740" /translation="MAERFSDNAVGTLADGIDDASTTITLADEPWAANFAAISQGDFQ RATITHSDYPQLYEIVRIIESDGLILTVERGTEGTAAHGWAAGSKVSARVTAEMLQSF APRLGIEDDPQAQYGRQFRTTTNNGQFVMNGRASASYKAVQISGVHALQPVAAAVRTN SLDDGYIDMNMTRESVGATAFVHLGDGIPGTWTAGNYYSEGSLVKPPTATGYHYALEM FPGKDYSDTTTQPNFDTYGSCPMALDSNDEEVGVWVAVPDPLAIVESLPGGTRIMVSE VGFICYEYGATTAPSVSIGADDDPTLFANDIALSQIAGEHQVHRISVTAGGSMHHKLR FRLETPAEGTFRGRFYWRGLIVGL" gene 1758026..1758706 /locus_tag="Alide_1694" /db_xref="GeneID:10103741" CDS 1758026..1758706 /locus_tag="Alide_1694" /inference="similar to AA sequence:KEGG:OSTLU_23918" /note="KEGG: olu:OSTLU_23918 predicted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126337.1" /db_xref="GI:319762400" /db_xref="GeneID:10103741" /translation="MSYPLINGAPINDGDGGGQTRSLRPVQFGAPSLRLVAASLRPVR FGVPSVKYGTDLVARASSLRSARFGDHTVVRGMPPSATVFHAGSMRPAHFGIPEFQSS MSAGPAQSLRPSAFGHPSLRAAQPVSGLRPVRFGVPGLAIAAGVAPLRAARLGVPALS LRFGASSLRRVRFGVPGLDIAGMSYPAASLRTVNFGTPALGGVVLRARALCPVRFGVP GMDRGASC" gene 1758700..1759866 /locus_tag="Alide_1695" /db_xref="GeneID:10103742" CDS 1758700..1759866 /locus_tag="Alide_1695" /inference="similar to AA sequence:KEGG:Aave_1709" /note="KEGG: aav:Aave_1709 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126338.1" /db_xref="GI:319762401" /db_xref="GeneID:10103742" /translation="MLTFESFTGINNVLPERRLKGNDLLVARDVDIGLTGEVSRRGGF TQESDQCHKNMHQARGFLLATCGSVLTAIHPDGARHVIHPALGPERVWYCDLPDGRTT YTNGLIHGVTDGVAGVERSVPAPASLGAPDVAFGALHPGQYRYHLAHVRMSDRLEGPA ISSGPVTIGQGGLRLDGLPELDGHVVNVYLSGQDGEGAYLAGVATGGSFEYAGSNAAL VLPCRTLGAQPFPVGTITAFWRGRVLVAQGDVLWASRPNAPHLADWRDFRQMPAPITA IQPVDDGIYVGTTQDLIWLGGATFDGLAYAPTRRGPVVPGSGVAAPGDRIKLGDGSGA GTAMLCIAGGEVVAGFSGGQTTSLTGDRYRTKATEVCAAFREVDGIPQYLAVPQ" gene 1759863..1762352 /locus_tag="Alide_1696" /db_xref="GeneID:10103743" CDS 1759863..1762352 /locus_tag="Alide_1696" /inference="similar to AA sequence:KEGG:GYMC10_1290" /note="KEGG: gym:GYMC10_1290 transcriptional regulator, AraC family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126339.1" /db_xref="GI:319762402" /db_xref="GeneID:10103743" /translation="MSLWNPYTFTIGGAPALLDAAPPALRVMGGGQASAEQLAAARMA FSRFCAVARTSPVPNPTETGRLPDGSAYRIVVVGAQALMELHPVVGGKPLSDEVRPGI WFLDPAPGEPGAGNAFFVLSPPGEGLEQWTLARLTGWPALPVAGRAGPRVSMATAKIM TTGIRAPEPAEYFYPNGGARLQQLGGYVSMTINAVGESAPSFVGFDENHRAMFLSGGV LSRDGLYLYRSSTSVNLDKTGAEGSGIKPQYEEPPTYPAISLTLVSEIYQPAVSTWAE SNGRQLLAVASNGRRIATLFTRQFDRLPPFAGDQYTIVKGGGLMEAYTTDVSYKGTTY VRVDARTLPGVISGALTYRGVEADLKVFDTRTGEAVVAQREPSDSFVPGTPVLMWWDA TSEAGAYSKSTGFGVGVDYSAPVFVLTSYSLTGTPGSYREDCTFALDGEVSHSAQGSQ TTHEILGPFFSGSELLPLIAKTEKSYESSFRGHASGSIKGFGLRGGDTPPQRPEFVDE ATFDAAIHTYEVSGTHAMEYKRTKNVQVGRFGELRLIDERTTETADLYWRRFIDAWTG APESSTGNSSSAYAWSVTRRALLVFDPELDLLCYSEFGFSGSGSAAYERTGVGDDDVT YYLSPGEPLPDLPRVRIVLRCGGETKYFDTAVAEASHDYSHRVAAAQLHPMLGYPYGA PAVHTADYLEDHNAIGTSGMWTVPMVAISDAIRAFADGTPVTTALMDGVPVFGYFWRP SPNAFVAQCSTRGSFPEPSRFLEAVQATYVRSPDGRGAYLRLQCNPSIPETVRGFAPQ TFVVDMRGLHTSPTTAQLASAGVDLSMAGAF" gene 1762352..1762783 /locus_tag="Alide_1697" /db_xref="GeneID:10103744" CDS 1762352..1762783 /locus_tag="Alide_1697" /inference="similar to AA sequence:KEGG:Smlt1972" /note="KEGG: sml:Smlt1972" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126340.1" /db_xref="GI:319762403" /db_xref="GeneID:10103744" /translation="MIVVNTLTGAVSEYTRHDFQSITPTHGGSATGLYAFDGDTDNGL PIVSEIRLPATLRESTLKQSIQMAYLSMRGDGSACFTVHGAREVWRYSFPLRPSEQTR CPVGRGIRENYLGFGLSNPAGQAFTLDRVEILAAASKSRRV" gene 1762786..1764591 /locus_tag="Alide_1698" /db_xref="GeneID:10103745" CDS 1762786..1764591 /locus_tag="Alide_1698" /inference="similar to AA sequence:KEGG:Aave_1715" /note="KEGG: aav:Aave_1715 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126341.1" /db_xref="GI:319762404" /db_xref="GeneID:10103745" /translation="MADMDLNGPAEIVEDKYERSVELAETASREVADFQRALNDSIYQ PPQISVQWQTMAAPSLPAIPNMPALPGIDFTEPGGQPGGLTATMRDVAIDDLNIQMPT LDFGQAPVLTIGQAPALPEVRDVAIPDAPDITLPDAPQFLALQTHSFGGVNLHEEWLD KLDDIPELSILQPTPFQYSPGARYASQLLDNLKATLNARIQGGSGIVPAVEQQIWDRA RDRETQIALAREQEVLRGAEALGFPLPSGVLAGQLADARREYHDKLSGLSRDIAIKQA ELEQQNMRDSIQAALQLESTLLEDCYKLEMLAFEAAKTAADNAIAAHNAALEHFKALL AGYQAYAAAYDTVVKAELSKVEVFKALLSAEETKASINKSLVDRYKAEIEGGMAAVEI YKARVGAAQTLVELERARIQAGGEQVRAFVATVNAETAKAEMYKTRVSAEATKVEAVG AVARAYGSKVGAQAEKARVEVAKFQALVSAKGLEWDGWKARLQAAVSRMDAAARTSSI VVDGYRLGAHAAEAQAQSVMRQWEASIKQYEASKDLTFRVASANAQAVMHANDARMEA AKVMLATGMQKVASSWSAVSASASISGNVTQSITG" gene 1764649..1765068 /locus_tag="Alide_1699" /db_xref="GeneID:10103746" CDS 1764649..1765068 /locus_tag="Alide_1699" /inference="similar to AA sequence:KEGG:Aave_1722" /note="KEGG: aav:Aave_1722 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126342.1" /db_xref="GI:319762405" /db_xref="GeneID:10103746" /translation="MTTPAVLSIVLYQGTTQRVPMVRRYVPYKIKGSECDGYVNACTG EPVPPGDFVDEDYAGCTARMQLRSDVFSTKVLLELTTEGGGIELAGNTLTLVFQPEDT QGLRFDEAVGHVEVVRPNGDVERQYEITVQFSPEGTR" gene 1765065..1765601 /locus_tag="Alide_1700" /db_xref="GeneID:10103747" CDS 1765065..1765601 /locus_tag="Alide_1700" /inference="similar to AA sequence:KEGG:Aave_1723" /note="KEGG: aav:Aave_1723 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126343.1" /db_xref="GI:319762406" /db_xref="GeneID:10103747" /translation="MSQTVVVTAPGGTAIVNAGGGSVVTSVPSTVVVEHESTPETIVV TRGIPGPRGPQGIPGPAGGAAFVRQADAPLSALCVVWEDAAGVVRPADYDDMDHVYLI SGLTLTATPSAGDVTVQRSGPVDDASWNWAPGPVYLGTGGALTQAPPVDGFDILIGYA VSPTRLYLDIQDPISLED" gene 1765605..1766123 /locus_tag="Alide_1701" /db_xref="GeneID:10103748" CDS 1765605..1766123 /locus_tag="Alide_1701" /inference="similar to AA sequence:KEGG:Aave_1724" /note="KEGG: aav:Aave_1724 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126344.1" /db_xref="GI:319762407" /db_xref="GeneID:10103748" /translation="MAQRFLARISGKTKQMEAKAASAGAGDAGKIPALGPDGKLDMSM MPAGIGADTQIIPASEALSAGNFVNIWSDAGAAKVRLADNSNGRPADGYVLDAVSSAA DATVYPLDGTNSELTGLAPGAEYWLGTAGGVTNTPLDETDAGNANKISQYLGKAKSAT ELITVDDGYVVL" gene 1766135..1767376 /locus_tag="Alide_1702" /db_xref="GeneID:10103749" CDS 1766135..1767376 /locus_tag="Alide_1702" /inference="similar to AA sequence:KEGG:Ent638_0148" /note="KEGG: ent:Ent638_0148 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126345.1" /db_xref="GI:319762408" /db_xref="GeneID:10103749" /translation="MAIRRPLVRVGGRVQQLPPGDSLPGAEGSALTGDLAYSVDPARY ALPDWLPCDGALVDNADAPESLQPYMARASGVDFSAGGTIESTSAAPQGVFDMLGDYA LMQMGASPYAIPLKKNDVGYSYLRESFGANPSAALKCAALGMTTVNFPCVLGFTTSAG GAFFARGISSTWSVSNVASLFTGKTVAGVVFCADGRFYLLSSTAPYLHSVQSDVNVAS SLVDVGGVGANGAGLCISPNKRYMVSWHNTTPYIYVLEFDGTKYVPLGSPPISTSGTS TFNRVEVSDTGVIVARTGSGSVFYVCSVTPTGAVGSMVQTTVNTASAWGLMPDGRHLL TWVSNAANYYPIANDTIGAGTALSMYSTGIYGTLYGRFGLIPGRLLAASSAAGSGYAM VGEVTPSGWIAPRIRYGFLKA" gene 1767437..1767742 /locus_tag="Alide_1703" /db_xref="GeneID:10103750" CDS 1767437..1767742 /locus_tag="Alide_1703" /inference="similar to AA sequence:KEGG:Aave_1728" /note="KEGG: aav:Aave_1728 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126346.1" /db_xref="GI:319762409" /db_xref="GeneID:10103750" /translation="MKTETLDSIGAAGNKVTIVGASLSGAGWLTASEFAAIVGALVAI AGVVITWYYKRQANRRLAAEHALRQQERQMRIDLMRATGLPQVPCGDTDIGRLEFDE" gene 1767739..1768323 /locus_tag="Alide_1704" /db_xref="GeneID:10103751" CDS 1767739..1768323 /locus_tag="Alide_1704" /inference="similar to AA sequence:KEGG:BB3482" /note="KEGG: bbr:BB3482 phage lysozyme" /codon_start=1 /transl_table=11 /product="phage lysozyme" /protein_id="YP_004126347.1" /db_xref="GI:319762410" /db_xref="GeneID:10103751" /translation="MSTASRSGIQPKVIWVAALGGFVTLLSPALIDHLQKWESGKSRA LVVYEDKLAGNIPTVCNGLTRHVTRTPIVVGERWTEDKCIAEEAAAIERVQRALLPCF KRLPQPSVLDMASSHAWNFGASATCGSGAMVAWNRGEWERGCQRISRGGDGRLVWSFT SRIDPRTGQKVYTFVQGLANRRADETAKCMGGLT" misc_feature 1767814..1768293 /locus_tag="Alide_1704" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" misc_feature 1767850..1767852 /locus_tag="Alide_1704" /note="catalytic residue [active]" /db_xref="CDD:29558" gene 1768320..1768583 /locus_tag="Alide_1705" /db_xref="GeneID:10103752" CDS 1768320..1768583 /locus_tag="Alide_1705" /inference="similar to AA sequence:KEGG:PSHAa0938" /note="KEGG: pha:PSHAa0938 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126348.1" /db_xref="GI:319762411" /db_xref="GeneID:10103752" /translation="MKHILIALVAVALVGCTMVPAGTAHRACELLQIASSEADLAPSW YLGAGEVLERCGQPSARAAGEVRACYASARNGYSDNKECEALE" sig_peptide 1768320..1768391 /locus_tag="Alide_1705" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.981) with cleavage site probability 0.680 at residue 24" gene 1768624..1769091 /locus_tag="Alide_1706" /db_xref="GeneID:10103753" CDS 1768624..1769091 /locus_tag="Alide_1706" /inference="similar to AA sequence:KEGG:Aave_2360" /note="manually curated; KEGG: aav:Aave_2360 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126349.1" /db_xref="GI:319762412" /db_xref="GeneID:10103753" /translation="MAVTLITHLIVAFVAAAGAWAFQGARMDAAVAEVRLEQTNERLR AVSQARADERAITKTYQEALNAARTRENALRRDRDAARAESDGLRDQLSDAARRIADA PPTAVAEYAAAVSELLAVCSRERTAFAAAADGHAADVRTLTAAWPVMTTPTAR" sig_peptide 1768624..1768689 /locus_tag="Alide_1706" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.834) with cleavage site probability 0.805 at residue 22" gene complement(1769104..1769496) /locus_tag="Alide_1707" /db_xref="GeneID:10103754" CDS complement(1769104..1769496) /locus_tag="Alide_1707" /inference="protein motif:PFAM:PF03681" /note="PFAM: Uncharacterised protein family UPF0150; KEGG: bpa:BPP2077 hypothetical protein" /codon_start=1 /transl_table=11 /product="uncharacterized protein family upf0150" /protein_id="YP_004126350.1" /db_xref="GI:319762413" /db_xref="InterPro:IPR005357" /db_xref="GeneID:10103754" /translation="MLYPIYVHKDADSAYGAIFPDFPGCFAAADDLQGLPRAAQEAAE AHFGADDDPIPAPTSPEAWAADPDYSGGFWMLVEIDLSKVRAKAVRLNISLNESLLQR IDLAAKARGQSRSAFLATAAEHEMTGAA" misc_feature complement(<1769398..1769490) /locus_tag="Alide_1707" /note="Uncharacterised protein family (UPF0150); Region: UPF0150; cl00691" /db_xref="CDD:193911" misc_feature complement(1769125..1769229) /locus_tag="Alide_1707" /note="Ribbon-helix-helix protein, copG family; Region: RHH_1; pfam01402" /db_xref="CDD:144845" gene complement(1769524..1769706) /locus_tag="Alide_1708" /db_xref="GeneID:10103755" CDS complement(1769524..1769706) /locus_tag="Alide_1708" /inference="protein motif:PFAM:PF07927" /note="PFAM: YcfA family protein; KEGG: bpa:BPP2078 hypothetical protein" /codon_start=1 /transl_table=11 /product="ycfa family protein" /protein_id="YP_004126351.1" /db_xref="GI:319762414" /db_xref="InterPro:IPR012933" /db_xref="GeneID:10103755" /translation="MNSAALIKQIKADGWVLVRTVGSHHQFKHPTKPGKVTVPHPKKD LPLPTVRSILKQAGLR" misc_feature complement(1769530..1769691) /locus_tag="Alide_1708" /note="YcfA-like protein; Region: YcfA; cl00752" /db_xref="CDD:193928" gene 1769798..1770088 /locus_tag="Alide_1709" /db_xref="GeneID:10103756" CDS 1769798..1770088 /locus_tag="Alide_1709" /inference="similar to AA sequence:KEGG:Daci_1655" /note="KEGG: dac:Daci_1655 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126352.1" /db_xref="GI:319762415" /db_xref="GeneID:10103756" /translation="MQIDQIAIAVLGALAAWLSQARSAQARRWAPVFGMLGQPFWFYA AWEAGQWGIFAVSVLYALAWMRGLWVYWIAPRPADGVGRLATIQLSPDRKRS" sig_peptide 1769798..1769872 /locus_tag="Alide_1709" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.321 at residue 25" gene 1770085..1770345 /locus_tag="Alide_1710" /db_xref="GeneID:10103757" CDS 1770085..1770345 /locus_tag="Alide_1710" /inference="similar to AA sequence:KEGG:Daci_1656" /note="KEGG: dac:Daci_1656 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126353.1" /db_xref="GI:319762416" /db_xref="GeneID:10103757" /translation="MILALHIDKDEPGHYTARVLDCRAEVDEFAASTIAAAIREAAVR GYDAKGFHIWYGHVCIGTTSAYAMRHDGETLALRLVRLHAEF" gene complement(1771237..1771473) /locus_tag="Alide_1711" /db_xref="GeneID:10103758" CDS complement(1771237..1771473) /locus_tag="Alide_1711" /inference="similar to AA sequence:KEGG:Veis_5041" /note="KEGG: vei:Veis_5041 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126354.1" /db_xref="GI:319762417" /db_xref="GeneID:10103758" /translation="MTGKHHNWHKAWRRDGPKLIHDSGLAVEYNNDMGWSSTDDTTEA WSAFELARGVPLHDLQARLGRLLREAAEWDQRNP" gene complement(1771476..1771712) /locus_tag="Alide_1712" /db_xref="GeneID:10103759" CDS complement(1771476..1771712) /locus_tag="Alide_1712" /inference="similar to AA sequence:KEGG:Sare_4718" /note="KEGG: saq:Sare_4718 pantoate--beta-alanine ligase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126355.1" /db_xref="GI:319762418" /db_xref="GeneID:10103759" /translation="MTNRLQLAIDAATAKHQAGADVADIVAAAHAVLSASGEFGKGLD RSVRRVVRNVTGLDLEPGQGHGNRRADGAINYRG" gene complement(1771805..1772131) /locus_tag="Alide_1713" /pseudo /db_xref="GeneID:10103760" gene complement(1773128..1773946) /locus_tag="Alide_1714" /pseudo /db_xref="GeneID:10103761" gene 1774166..1775152 /locus_tag="Alide_1715" /db_xref="GeneID:10103762" CDS 1774166..1775152 /locus_tag="Alide_1715" /inference="protein motif:PFAM:PF01609" /note="PFAM: transposase IS4 family protein; KEGG: ajs:Ajs_3395 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase is4 family protein" /protein_id="YP_004126356.1" /db_xref="GI:319762419" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002559" /db_xref="GeneID:10103762" /translation="MKQSSLGLSNTTKRTRKREFLDAMELVVPWAELVSLIEPYAPES GRRGQQPFAVQTLLRIHFMQQWFKLSDPAMEEALHDVPAFRDFAGLSHWDEHIPSESS ILRFRHLLERHKLADQILATVNALLQAKGLQLKAGTVVDATLIAAPSSTKNQSHERDP EMHQSKKGNQWYFGMKAHIGVDADSGLVHTVRGTSGNVGDVVEANSLLHGQETDAFGD AGYQGVDKRADAKPTVRWHVAMRPGLRRALDKDRPLEALIDQLERTKASIRAKVEHPF RVLKQQFGYVKVRYRGLKKNTAQIVTLFALSNLWMARHKLLQCMGQVRAHRA" misc_feature 1774307..1774537 /locus_tag="Alide_1715" /note="Transposase domain (DUF772); Region: DUF772; cl12084" /db_xref="CDD:196330" misc_feature 1774343..1775119 /locus_tag="Alide_1715" /note="Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]; Region: COG3039" /db_xref="CDD:32853" gene 1775283..1775474 /locus_tag="Alide_1716" /pseudo /db_xref="GeneID:10103763" gene 1775921..1776865 /locus_tag="Alide_1717" /db_xref="GeneID:10103764" CDS 1775921..1776865 /locus_tag="Alide_1717" /inference="similar to AA sequence:KEGG:Mex_2p0814" /note="KEGG: mea:Mex_2p0814 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126357.1" /db_xref="GI:319762420" /db_xref="GeneID:10103764" /translation="MIKLALTLLCLLGLSTSALALEFREIPNSGEILATGRVERGDAE KIARIITLEYKQRHHLVRHLVTLSLDSPGGSLLGGLQLGYAIRQLGVHTNIGAGQSCM SACALAFLAGQERTVEGRFGVHAVSFDPNAKHADRNDQLDSIQQLGAITTAYVSEMTG KSDVALKALSTSAASISILNDAELVSMGVITIARRPSQFGRPGFKCPAEQNFTVLSAV CAHIDISLLDQELNTLYSKIQKGGAPSDLAEEQERWRRYRNSCINDRQPNGYASIVNC VRESYTVRRDQLMSVWLAMSAKKSRPGSENWQPIEPTR" sig_peptide 1775921..1775983 /locus_tag="Alide_1717" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 21" misc_feature <1776176..1776394 /locus_tag="Alide_1717" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cl14780" /db_xref="CDD:189268" misc_feature 1776569..1776784 /locus_tag="Alide_1717" /note="Protein of unknown function (DUF1311); Region: DUF1311; cl01530" /db_xref="CDD:194158" gene complement(1777672..1778493) /locus_tag="Alide_1718" /db_xref="GeneID:10103765" CDS complement(1777672..1778493) /locus_tag="Alide_1718" /inference="protein motif:PFAM:PF01695" /note="KEGG: mpt:Mpe_A2996 transposase; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="istb domain protein ATP-binding protein" /protein_id="YP_004126358.1" /db_xref="GI:319762421" /db_xref="GO:0005524" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10103765" /translation="MSAEIISALKAMKLHGMAANYPEVAAQARHTDFTPEAFLNQLLK AETAERAVRSMAYQMGAARFPAHRDLAGFEFAQANVDEALVRSLHTAKFIEAAHNAVL IGGPGTGKTHLATAVGIEAIQRHSKRVRFFSTVELVNALELEKAQGKAGQIAHRLMYT DLVVLDELGYLPFSQAGGALLFHLLSKLYEHTSVMITTNLSFGEWSQVFGDAKMTTAL LDRFTHHCHIVETGNDSWRFKNSSATTTSAAKTRGRKAPTKGEAIPSALDLSTTE" misc_feature complement(1777702..1778481) /locus_tag="Alide_1718" /note="transposase/IS protein; Provisional; Region: PRK09183" /db_xref="CDD:181681" misc_feature complement(1777810..1778250) /locus_tag="Alide_1718" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(1778161..1778184) /locus_tag="Alide_1718" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(1777897..1777899,1777996..1777998, 1778158..1778181)) /locus_tag="Alide_1718" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(1777993..1778010) /locus_tag="Alide_1718" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(1777831..1777833) /locus_tag="Alide_1718" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(1778490..1780001) /locus_tag="Alide_1719" /db_xref="GeneID:10103766" CDS complement(1778490..1780001) /locus_tag="Alide_1719" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_6160 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126359.1" /db_xref="GI:319762422" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="InterPro:IPR017894" /db_xref="GeneID:10103766" /translation="MGTLAKIRRLHLREGVPIKEIERRTGIARNTIKSWLRRGQMVEP KYPARVMATKLDGFTEQLVIWLKADAHRGKRDRRTVKLMYEELAAQGYQGGYGRVAAF ARRWRESQAANANKAAFVPLKFALGEAFQFDWSTEYAFVGGLRRRLEVAHTKLCASRA FWLVAYPTQSHEMLFDAHARAFAAFGGVPQRGIYDNMKTAVDKVGLGKRRVINARFEA MTGHYLFEPEFCNVASGWEKGIVEKNVRDRRTSIWHKAVKLRWDSMETLNTWLGEQCR AAWAELNHPEWPALKVADMLQDEQLRLMPNPKPFDGYVEVPARVSSTALVHLQRNRYS VPSEHAHEVVSLRLYPDRLEIVAENVRVASHVRSFERSQTFYDWRHYVTLIERKPGAL RNGAPFETLPEPLRKLQAILLRHEGGDRVMAQVLAAVPVHGLDAVLVAAQLALEAGKP SGEHVLNVLARLKAPGDGACLEVASTPLKLAVEPLANVQRYDRLRGAAGETAR" misc_feature complement(1779171..1779980) /locus_tag="Alide_1719" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584" /db_xref="CDD:34222" misc_feature complement(1779264..1779623) /locus_tag="Alide_1719" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1780095..1781576) /locus_tag="Alide_1720" /db_xref="GeneID:10103767" CDS complement(1780095..1781576) /locus_tag="Alide_1720" /inference="similar to AA sequence:KEGG:mma_3457" /note="KEGG: mms:mma_3457 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126360.1" /db_xref="GI:319762423" /db_xref="GeneID:10103767" /translation="MSSDFHILADAADDDSLDNHRNAPRPDPACLYGLVGDVARAGSE TTEANPFAIAANFIAFMSCAVGRGPYMAVGNTWHHARQFMLHIGRSGRGRKGDAASLV SRIERSLNALSPDATPKVHRGGLSSREGLVYLIHDGYTEGQKEVEPVLDKRLLVIESE FANVLHQSKREGNTLSAALRDCWDGVSMKPATKTSRLWATDPHIALIGAVTPSELLAL MASRELTNGFANRFLMIWAERPKMLAFPRATRQEEVDALAERVHAVLTFCKAERWAEK DHMCVELSHEARQRYEFLYHSELNDDRAGERITALIERRAPMLLRLAMLFALCDLTST VEVRHIDAALAWVRYSVESVKFIFASAADEAKAAETTETAQEITAFLAERGQATRSAL SKDCFKGHKTKAVLDAAIDELLACNPPCIVVETVARPKGVTGTPIKIYRLAAKSAKCA KREEPRGIAGDSAVRNARETCETSPDDDASIRTVRTVLISEQI" gene complement(1781573..1782496) /locus_tag="Alide_1721" /db_xref="GeneID:10103768" CDS complement(1781573..1782496) /locus_tag="Alide_1721" /inference="similar to AA sequence:KEGG:Lcho_3476" /note="KEGG: lch:Lcho_3476 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126361.1" /db_xref="GI:319762424" /db_xref="GeneID:10103768" /translation="MIARNTTNEFLGAIQASLGYAPQYLEPGRFCRFGPRKSGWAKLF PDCLGGVYGDYRQNLSSHWNARQPQHQSPVELAAMRYHVQLAAREREAEQRAQWAKNA ERNSALWAASIPADGAVRSYLAARGLAHWPIPPCIRQHPALAYWHSDEDGELHMLGHY PTMLAPIVSGGKLLAIHRTYLGDGCKADVPTPKKLTAASGPLAGACIPLAVPRGGVLG IAEGIETAAAASLGSGLPVVAAYCANALASFSFPRGIERLVIFADHDPAGQQAAATLA QRATRAGLIHKTLTPSKPGSDWADVWLEGTQ" gene complement(1782579..1782818) /locus_tag="Alide_1722" /db_xref="GeneID:10103769" CDS complement(1782579..1782818) /locus_tag="Alide_1722" /inference="similar to AA sequence:KEGG:Ajs_3336" /note="manually curated; KEGG: ajs:Ajs_3336 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126362.1" /db_xref="GI:319762425" /db_xref="GeneID:10103769" /translation="MQAIHSIEARDQATAPKFIPLAHENRPAVDTAAAAYYLGRRPQT LRGWACMENGPIRPIRINGRLAWPVAELRRVLGVA" gene complement(1782983..1783840) /locus_tag="Alide_1723" /db_xref="GeneID:10103770" CDS complement(1782983..1783840) /locus_tag="Alide_1723" /inference="similar to AA sequence:KEGG:Lcho_3471" /note="KEGG: lch:Lcho_3471 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126363.1" /db_xref="GI:319762426" /db_xref="GeneID:10103770" /translation="MKNRKDTKHELLAPPATQATHESQSTAFDLDREVIAARSHGGMT RNDVAQGMAAPQEAMTEQEAAEHEIAWFDATLDAAGFFALEHVPPIQAAMLLCGFCPH DSTESEAENCATDYTSPEDFKRLRLTFVSINKPARCSLLDWMAIAAGAGRAVHPWAQR YAKLRGLCNPAESPPTPVVAGGSSNAPLPLTTSDIAFCFDGLRWSEKEWRTPLGNKPK WLQSCVVIPGQRGVSQTRWNPVLIAAWLFSNGYVQAKSARARFQTKPQLKPWLDAWKT YEADNFDTP" gene complement(1784162..1785499) /locus_tag="Alide_1724" /db_xref="GeneID:10103771" CDS complement(1784162..1785499) /locus_tag="Alide_1724" /inference="protein motif:PFAM:PF00589" /note="KEGG: ajs:Ajs_3340 phage integrase family protein; manually curated; PFAM: integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004126364.1" /db_xref="GI:319762427" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10103771" /translation="MSGQQSRVRLTAGRVADFTCPPGKSQAFLWDTDTPALMLRATPT GRKTYAFEARLNGSTIRVSIGTAAEWTLEAARTKAQALKMMVDSGTDPRVVERQQQAE REAQQTAAAVKAVTVGEAWTVYLADRRQHWGDRHYQDHEKLACAGGEVAKRGTRGRGV TIAGPLHPLMAMRLQELTAPVIEAWATNEAKTRPTPARLSWRLLRAFLAWCAEHPQYA AVVPAQNPAKTRRAREALGKAGIKQDALLKEQLPAWFAAVRNIGNPAISAYLQTLLLT GARPGEVLAMHWEDINTQWRGLTIRDKVEGRRVIPLTPYVHQLLTALPRRSEWVFAST VQEPGKPSQPIAKPHRAHATACKVAGIDGLTFHGLRRSFKSLTEWLEIPAGVVAQIQG HKPSATAEKHYTVRPLDLLRVHHERIEAWILEQAGVVFDAKTPPRAIRLVAKQ" misc_feature complement(1784291..1785385) /locus_tag="Alide_1724" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(1784288..1784767) /locus_tag="Alide_1724" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature complement(order(1784291..1784293,1784399..1784407, 1784591..1784593,1784660..1784665)) /locus_tag="Alide_1724" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature complement(order(1784291..1784293,1784321..1784323, 1784390..1784392,1784399..1784401,1784591..1784593, 1784663..1784665)) /locus_tag="Alide_1724" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature complement(order(1784291..1784293,1784321..1784323, 1784390..1784392,1784399..1784401,1784663..1784665)) /locus_tag="Alide_1724" /note="active site" /db_xref="CDD:29495" gene 1785915..1786970 /locus_tag="Alide_1725" /db_xref="GeneID:10103772" CDS 1785915..1786970 /locus_tag="Alide_1725" /inference="similar to AA sequence:KEGG:Aave_2648" /note="KEGG: aav:Aave_2648 signal peptide protein" /codon_start=1 /transl_table=11 /product="abc-type nitrate/sulfonate/bicarbonate transporter periplasmic ligand binding subunit" /protein_id="YP_004126365.1" /db_xref="GI:319762428" /db_xref="GeneID:10103772" /translation="MFPLSVTRRQLGRLGILSAAALGVPALLRAQSRPGAAMPVRIAV GGQAGLYYLPLTVALGLGFFRDEGLDVRVMDYPGGGLALQALHGRVADVCCGAFEHVV RQQLRGVAYRSLAVLGRAPQLALVASARHWPLKDIAGFRGLRVGVTALDSSTQFLASL WLNQSGVPLDTVRFVGVGSGMGALTALRQGRVHALCHSDPLITMLEQRGEVRLLADTR TLKGTVEMFGGAMPGACLYAPQDYVQSHPAEVQALVNALVHALKWLQTASPTDLARVV PPSYLLGDRARYMAAFYKVRETLSPDGMMPEDGPVTAVRAVARLQPESAAAAARVALD KTFSNNWVRKAKQKFQL" sig_peptide 1785915..1786007 /locus_tag="Alide_1725" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.772) with cleavage site probability 0.725 at residue 31" misc_feature 1785939..1786958 /locus_tag="Alide_1725" /note="ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715" /db_xref="CDD:31059" misc_feature 1786047..1786685 /locus_tag="Alide_1725" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1787069..1787221 /locus_tag="Alide_1726" /db_xref="GeneID:10103773" CDS 1787069..1787221 /locus_tag="Alide_1726" /inference="similar to AA sequence:KEGG:Dtpsy_1977" /note="KEGG: dia:Dtpsy_1977 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126366.1" /db_xref="GI:319762429" /db_xref="GeneID:10103773" /translation="MSLHLSIGPLVSLIAGILILIMPKLLNVIVALYLIVIGVLGLMG MHTLRL" gene complement(1787239..1788753) /locus_tag="Alide_1727" /db_xref="GeneID:10103774" CDS complement(1787239..1788753) /locus_tag="Alide_1727" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase catalytic; MLTD_N domain protein; Peptidoglycan-binding lysin domain; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic" /protein_id="YP_004126367.1" /db_xref="GI:319762430" /db_xref="InterPro:IPR000189" /db_xref="InterPro:IPR008258" /db_xref="InterPro:IPR010511" /db_xref="InterPro:IPR018392" /db_xref="GeneID:10103774" /translation="MKILHILWLASLLWLTGCATTSTPSATTSSDTSQASTGATAVYP SGPLSPITASTAKGRAVAGIDAPSDLWDRIRRGFAMPDLDTDLVRDREQWYATRPDYM QRMTERSSKYLFHIVEELERRGMPTELALLPYIESAFNPQAVSSAKAAGMWQFMPATG SYFDLKQNAFRDDRRDVLASTRAALDYLQKLYGMFGDWHLALAAYNWGEGSVARAIAR NEKQGLDTGYTNLSMPAETRMYVPKLQAVKNIVADPVRFSTELPLIENHPYFQSVEIT RDIDVSLVANLAGIREEDFRALNPSLHRPVILAAGMPQILLPWDNAQVFRRNLEAYNE GQYASWTVWTVPSTMSVSAAAQRAGMSESELRQLNGIPPRMMIKAGSALMVPRAATTR ADVSSHVADNGQIAFTPEIVTRRTTVRAGKRDTVASIARRYKVSAADVADWNDLKASS SFKAGERVVMYLPMRLTATALSHSPGKRQAGKAIAQTAKASPARKGGTPAKRKR" sig_peptide complement(1788673..1788753) /locus_tag="Alide_1727" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.899) with cleavage site probability 0.280 at residue 27" misc_feature complement(1787368..1788567) /locus_tag="Alide_1727" /note="membrane-bound lytic murein transglycosylase D; Provisional; Region: mltD; PRK10783" /db_xref="CDD:182727" misc_feature complement(1788016..1788378) /locus_tag="Alide_1727" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature complement(order(1788139..1788141,1788193..1788195, 1788286..1788288,1788346..1788348)) /locus_tag="Alide_1727" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature complement(1788346..1788348) /locus_tag="Alide_1727" /note="catalytic residue [active]" /db_xref="CDD:29556" misc_feature complement(1787377..1787505) /locus_tag="Alide_1727" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cl00107" /db_xref="CDD:153515" gene complement(1788750..1789520) /locus_tag="Alide_1728" /db_xref="GeneID:10103775" CDS complement(1788750..1789520) /locus_tag="Alide_1728" /inference="protein motif:TFAM:TIGR03413" /note="TIGRFAM: hydroxyacylglutathione hydrolase; KEGG: dia:Dtpsy_1975 hydroxyacylglutathione hydrolase" /codon_start=1 /transl_table=11 /product="hydroxyacylglutathione hydrolase" /protein_id="YP_004126368.1" /db_xref="GI:319762431" /db_xref="GO:0004416" /db_xref="GO:0008270" /db_xref="InterPro:IPR001018" /db_xref="InterPro:IPR017782" /db_xref="GeneID:10103775" /translation="MLPLPAFSDNYIWMLHDARHALVVDPGDAAPVLQALHGMGLSLR TILVTHHHGDHVGGVNALREATGAAIYGPAGEAMPEPITRLRHGEAVTALGLRFAVID VPGHTAGHIAYYCADVDGAPLLFCGDTLFSGGCGRLFEGTPAQMQASLDTLAALPGDT RVCCAHEYTLSNLKFARAVEPGNQALLQYLGHCESLRQAGRPTLPSRMDTERAINPFL RTREATVAQAAHGFDAHVDPREPATVLAALRQWKNEFR" misc_feature complement(1788756..1789517) /locus_tag="Alide_1728" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 1789525..1790307 /locus_tag="Alide_1729" /db_xref="GeneID:10103776" CDS 1789525..1790307 /locus_tag="Alide_1729" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_1744 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_004126369.1" /db_xref="GI:319762432" /db_xref="GO:0008168" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10103776" /translation="MSGEIIGLHHWFGSPPGRYLLAWEQERYDELVADIFGYHALQLG MPGLQGLRANRMPHRWLALGGEEARLLPREASPAEAPAVALLAEAVALPFAEGSLDLV AMPHTLELSVDPHAALREVYRVLVPEGRAVISGLNPLSLWGLRQWRARLYQRCGGGGQ LYLPDVGEFITPGRLRDWLRLLGFELESISFGCYRPAAASERWLEHYGWMDGLGARWW PILGAAYVIVAAKRVQGMRLLEPSWRKAPKAAAAQVQVARRH" misc_feature <1789816..1790100 /locus_tag="Alide_1729" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1790353..1790799 /locus_tag="Alide_1730" /db_xref="GeneID:10103777" CDS 1790353..1790799 /locus_tag="Alide_1730" /inference="protein motif:PFAM:PF00075" /note="PFAM: ribonuclease H; KEGG: dia:Dtpsy_1973 ribonuclease H" /codon_start=1 /transl_table=11 /product="ribonuclease h" /protein_id="YP_004126370.1" /db_xref="GI:319762433" /db_xref="GO:0003676" /db_xref="GO:0004523" /db_xref="InterPro:IPR002156" /db_xref="GeneID:10103777" /translation="MNQVVIYTDGACKGNPGPGGWGVVLRSGELEKELFGGELGTTNN RMELMAVIQALAALKRPCQVALYLDSQYVRQGITEWIHGWKKKGWRTAAGQPVKNVEL WQRLDELAHKAGHRIEWHWVKGHAGDPGNERADALANKGVEQALGQ" misc_feature 1790359..1790775 /locus_tag="Alide_1730" /note="RNase HI family found mainly in prokaryotes; Region: RNase_HI_prokaryote_like; cd09278" /db_xref="CDD:187702" misc_feature order(1790377..1790388,1790476..1790484,1790491..1790493, 1790557..1790559,1790713..1790715,1790767..1790769) /locus_tag="Alide_1730" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:187702" misc_feature order(1790377..1790379,1790491..1790493,1790557..1790559, 1790755..1790757) /locus_tag="Alide_1730" /note="active site" /db_xref="CDD:187702" gene complement(1790902..1792119) /locus_tag="Alide_1731" /db_xref="GeneID:10103778" CDS complement(1790902..1792119) /locus_tag="Alide_1731" /inference="protein motif:PFAM:PF00155" /note="PFAM: aminotransferase class I and II; KEGG: rso:RSp1232 aspartate aminotransferase A protein" /codon_start=1 /transl_table=11 /product="aminotransferase class i and ii" /protein_id="YP_004126371.1" /db_xref="GI:319762434" /db_xref="GO:0004523" /db_xref="GO:0030170" /db_xref="InterPro:IPR001176" /db_xref="InterPro:IPR004838" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10103778" /translation="MNASVHALNRFLAQAKPSATYKVMDRVAARRSAGAQVISLCAGE PDFDTPGHVREAGIAAIRAGHTRYTQVAGLRALREAIAAKFQRENGLELDWRGTLVCS GGKQAIFNALAATLNEGDEVIMPAPYWVSYPEIVQLCGGKAITVACNAGNGFKLTPAA LQAAITPRTRWLILNSPSNPTGAVYSRAELQALAEVLLAHPHVLVLSDDIYEHLIFDG LAFFTIAQVEPRLRERVLTMNGVSKAYAMTGWRIGFCTGPGWLIEAMEKLQGQQTSGA CTISQHAALAALTGPQDFIQQSRTAFQRRRDMVVESLNQAPGLHCEVPQGAFYAFASC EGLIGKTTPGGTQLDTDEAVTTALLGEAGVAAVHGSAFGLGPYLRVAYAVDDAALRGA CEAIRHFCTRLAD" misc_feature complement(1790929..1792032) /locus_tag="Alide_1731" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature complement(1790929..1792008) /locus_tag="Alide_1731" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(1791367..1791369,1791391..1791396, 1791400..1791402,1791487..1791489,1791583..1791585, 1791733..1791735,1791805..1791813)) /locus_tag="Alide_1731" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(1791271..1791273,1791280..1791282, 1791367..1791375,1791508..1791510,1791703..1791705, 1791802..1791804)) /locus_tag="Alide_1731" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(1791391..1791393) /locus_tag="Alide_1731" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(1792116..1792748) /locus_tag="Alide_1732" /db_xref="GeneID:10103779" CDS complement(1792116..1792748) /locus_tag="Alide_1732" /inference="protein motif:PFAM:PF03737" /note="PFAM: Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2989 dimethylmenaquinone methyltransferase" /codon_start=1 /transl_table=11 /product="dimethylmenaquinone methyltransferase" /protein_id="YP_004126372.1" /db_xref="GI:319762435" /db_xref="InterPro:IPR005493" /db_xref="InterPro:IPR016160" /db_xref="GeneID:10103779" /translation="MAYSAAQLEQARKLGTSTLFEASGLATGAANAAIRPVWAGASIA GPAYPLECSPGDNLAIHIAMEKAPRGSILVISTGGFVAGYWGEVLTVAAEAAGIAGLV IDGGVRDVAALTSRRFAVFTRGISMRGTIKTSAPSVGQPISLTGTPVAPGDLVVADDD GVLVIPAAHVEHALANGQARADKEARMMEALAQGKSTLELMGLTSWRQAR" misc_feature complement(1792167..1792736) /locus_tag="Alide_1732" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene complement(1792754..1793428) /locus_tag="Alide_1733" /db_xref="GeneID:10103780" CDS complement(1792754..1793428) /locus_tag="Alide_1733" /inference="protein motif:PFAM:PF03737" /note="PFAM: Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2990 dimethylmenaquinone methyltransferase" /codon_start=1 /transl_table=11 /product="dimethylmenaquinone methyltransferase" /protein_id="YP_004126373.1" /db_xref="GI:319762436" /db_xref="InterPro:IPR005493" /db_xref="GeneID:10103780" /translation="MNRHMHAQDQELVALFDGLDTPGVSDAMDKLGLHGQALGIMPLA NYARAVAGPAFTVKYVPSSNPPGTVGDFIDDVAPGDVIVIDNDGRTDCTVWGDIMTQY AGLRGIAATVIDGVCRDVGKALGDGYPMFTAGRFMRTGKDRVQVETVNGTVAIGTVRV AARDIVVADANGVVVVPRGHAREVAETARRIEETESRIREQIVQGKTLGEARAALGYH KLQAKE" misc_feature complement(<1792961..1793419) /locus_tag="Alide_1733" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene 1793567..1794493 /locus_tag="Alide_1734" /db_xref="GeneID:10103781" CDS 1793567..1794493 /locus_tag="Alide_1734" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS03179 transcription regulator protein" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126374.1" /db_xref="GI:319762437" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103781" /translation="MSTIDFRLIRQLWMFLAVAEEQNFGRAAARLAMSQPPLTEQIKV LEHSLRLQLFERSRRGTQLSPAGAAILPAVRQFARQVEHLERVVREVAAGQSGVLHVG AITSAMLDTVPPLLDHLRRTHPRLTVFVREIDSVDAISGLEAGELDLAFVRIDGEVSS GGIAVLPLMEDRLAVATSHDHALAAQPRVRLKSLAEEQWVMPARQVAPAYFDLLVNIC RTQGFSPRVLHEVRSVTSQIAYVGCGQGVALVPASMRKLAPANVVVRPLKEKVMVITA AAAWNTRRHHPMVDEAVDWLRAQGRQGRTPRP" misc_feature 1793570..1794454 /locus_tag="Alide_1734" /note="DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986" /db_xref="CDD:182183" misc_feature 1793591..1793767 /locus_tag="Alide_1734" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1793858..1794454 /locus_tag="Alide_1734" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature order(1793873..1793875,1793894..1793896,1793903..1793908, 1793912..1793917,1793924..1793926,1793948..1793950, 1793954..1793956,1793960..1793962,1794098..1794100, 1794200..1794205,1794260..1794265,1794281..1794286, 1794290..1794295,1794347..1794349) /locus_tag="Alide_1734" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature order(1793876..1793878,1794023..1794025,1794170..1794175, 1794194..1794196) /locus_tag="Alide_1734" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene 1794647..1795549 /locus_tag="Alide_1735" /db_xref="GeneID:10103782" CDS 1794647..1795549 /locus_tag="Alide_1735" /inference="protein motif:PFAM:PF00497" /note="KEGG: aav:Aave_4073 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_004126375.1" /db_xref="GI:319762438" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10103782" /translation="MKKYLAACALVAQGFLHVPVQAQTLEKIKASGAVTMGVRDSSIP LSYAGADGAPIGFHVDICRKVLEDVQAQLGLARLETRYQLVTSQNRIPLVANGTIDIE CGSTTNTQARQKEVAFALTTYVEEVRLAVRADSGIRSVRDLAGKVVVATTGTTSVQHL RRKVRELGLELKDVSLGKDHADSFLLLESGRADAWVLDQGVLRASIANARQSSAFSVV GEVLNAEPIAIMVRKDDPGFKRAVDVTIRKLLASGEMQVLWKKWFQAPIPPRGVALDM APPESLQRLWAHPSDLPMETFQAP" sig_peptide 1794647..1794715 /locus_tag="Alide_1735" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.991 at residue 23" misc_feature 1794746..1795435 /locus_tag="Alide_1735" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature 1794746..1795435 /locus_tag="Alide_1735" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature order(1794770..1794772,1794905..1794907,1794980..1794982, 1795109..1795111,1795238..1795240) /locus_tag="Alide_1735" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1795187..1795189,1795199..1795201,1795217..1795219) /locus_tag="Alide_1735" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature order(1795319..1795324,1795325..1795330) /locus_tag="Alide_1735" /note="hinge residues; other site" /db_xref="CDD:29040" gene 1795585..1796262 /locus_tag="Alide_1736" /db_xref="GeneID:10103783" CDS 1795585..1796262 /locus_tag="Alide_1736" /inference="protein motif:PFAM:PF03737" /note="PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsl:RPSI07_mp1263 dimethylmenaquinone methyltransferase; protein" /codon_start=1 /transl_table=11 /product="dimethylmenaquinone methyltransferase" /protein_id="YP_004126376.1" /db_xref="GI:319762439" /db_xref="InterPro:IPR005493" /db_xref="GeneID:10103783" /translation="MTDTAHVEAHLARLQALDSNTVSDALDFFGLPGATFGIRPLWNC PRIVGRASTLQFAPKTGGGATVHPITPVIAASKGCDRILVIAGGLEGISCWGDIVANA AKAKGIRGTVIDGCSRDIEGSEAIGYPVYGRGITMISARNRAVQVSSGEPVTMAGVRV AQDDYVIADRCGTVFVPAACIGEVLDLGERIARRQDGMVQAVIAGRSVEEVMHDKEFE AIAVSQK" misc_feature 1795615..1796241 /locus_tag="Alide_1736" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene 1796342..1797319 /locus_tag="Alide_1737" /db_xref="GeneID:10103784" CDS 1796342..1797319 /locus_tag="Alide_1737" /inference="similar to AA sequence:KEGG:mma_2446" /note="KEGG: mms:mma_2446 tricarboxylate binding receptor" /codon_start=1 /transl_table=11 /product="tricarboxylate binding receptor" /protein_id="YP_004126377.1" /db_xref="GI:319762440" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103784" /translation="MCPRRISLACALLAAAASGAAFAQASAAFSCKIVKFVVPYPPGG SSDLLARMLVPGMNKLLDTTVVVENKAGAVGNIGTAQVSAAESDGCTWLLGNSSNIVV SRNLYKLTHDPVEYLKPVAEAAAVPMVLYVNANLPVKTFDEFIALLRKNPGKYSYASP GSGSTHQLLTEMMKIEFGLQAEHIPYKGSGPAIQDVIAGHVAFAFEGTSAIAPHVAGG KVKALATTGAARSNVLSTVPTMKELGHPKFVATNWYGVFVPAKTPDALVARLNAGLRQ VVKSPEIVESLRKLDSRASDLDAAGFARFVQEEIPFWKSLADQTGVKVD" sig_peptide 1796342..1796413 /locus_tag="Alide_1737" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.963 at residue 24" misc_feature 1796435..1797307 /locus_tag="Alide_1737" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1796489..1797289 /locus_tag="Alide_1737" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1797306..1797701) /locus_tag="Alide_1738" /db_xref="GeneID:10103785" CDS complement(1797306..1797701) /locus_tag="Alide_1738" /inference="similar to AA sequence:KEGG:Daci_4475" /note="KEGG: dac:Daci_4475 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126378.1" /db_xref="GI:319762441" /db_xref="GeneID:10103785" /translation="MTPLAEPDLRRLAAEAAARPRCADCAGLQRPGWESISGATNTAH LECLGPLGTEADWDRLDEYHPHGTNLWSPDAPIALGWHPYTRCALWRCPRCPRCAGAY LRYTEYGGYYEEERIRPLRSELIASLNPP" gene complement(1797698..1798024) /locus_tag="Alide_1739" /db_xref="GeneID:10103786" CDS complement(1797698..1798024) /locus_tag="Alide_1739" /inference="protein motif:PFAM:PF00085" /note="PFAM: Thioredoxin domain-containing protein; KEGG: dia:Dtpsy_1972 thioredoxin domain protein" /codon_start=1 /transl_table=11 /product="thioredoxin domain-containing protein" /protein_id="YP_004126379.1" /db_xref="GI:319762442" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR017936" /db_xref="GeneID:10103786" /translation="MPFAATHLTQPPTREAVDQLQGPAVLEFGTPWCGHCQRAQPLIE QALKDQAGVQHLKVEDGPGRPLGRSYRVKLWPTLIFLRNGQEAARLVRPQTAREIEEA LRGIAP" misc_feature complement(1797713..1797961) /locus_tag="Alide_1739" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature complement(order(1797917..1797919,1797926..1797928)) /locus_tag="Alide_1739" /note="catalytic residues [active]" /db_xref="CDD:48496" gene complement(1798026..1799384) /locus_tag="Alide_1740" /db_xref="GeneID:10103787" CDS complement(1798026..1799384) /locus_tag="Alide_1740" /inference="protein motif:TFAM:TIGR00177" /note="KEGG: dia:Dtpsy_1971 molybdenum cofactor synthesis domain protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV" /codon_start=1 /transl_table=11 /product="molybdenum cofactor synthesis domain protein" /protein_id="YP_004126380.1" /db_xref="GI:319762443" /db_xref="InterPro:IPR001453" /db_xref="InterPro:IPR005110" /db_xref="InterPro:IPR005111" /db_xref="InterPro:IPR020817" /db_xref="GeneID:10103787" /translation="MKTIDQIAAELQGYDPQALRAADVNAFLQRLVAPVAEAEEVGIF DALGRVLARDVVSPISVPPHDNSAMDGYAFDGAQLASGHALLLRPVGPTAFAGAAWTG RVGAGECVKIMTGAIMPAGLDTVVPQELTSAGPDGTIHIAAGVLRRGDNRRLLGEDLM QGCVALSKGELLTPAAIGLVASLGLKTVTVHRRLRVAYFSTGDEILSLGEPPREGAVY DSNRYTVFGLLTRLGVQVIDLGVVRDDPALLEAAFRRAAAEADAIITSGGVSVGEADH TRTMMRQLGDVAFWRIAMRPGRPMAVGRIRSELQGKTASNDHQPSVSSYQNESTHGAA GGSVLFGLPGNPVAVMVTFLAFVRPALLRMMGCTRAAPPLLRATSAEPMRKKAGRTEY QRGLVTQAADGTLQVRTTGNQGSGVLSSMVQANGLIVLHHEQGNVAAGDMVDVMMFDG VI" misc_feature complement(1798038..1799291) /locus_tag="Alide_1740" /note="molybdopterin biosynthesis protein MoeA; Provisional; Region: PRK10680" /db_xref="CDD:182643" misc_feature complement(1798041..1799291) /locus_tag="Alide_1740" /note="MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887" /db_xref="CDD:58168" misc_feature complement(order(1798053..1798055,1798137..1798139, 1798260..1798262,1798716..1798718,1798725..1798727, 1798731..1798733,1798833..1798835,1798839..1798844, 1798851..1798853,1798857..1798868,1798911..1798913, 1799253..1799255)) /locus_tag="Alide_1740" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58168" misc_feature complement(order(1798581..1798583,1798653..1798655, 1798773..1798775,1798779..1798784)) /locus_tag="Alide_1740" /note="putative functional site; other site" /db_xref="CDD:58168" misc_feature complement(order(1798332..1798334,1798341..1798343, 1798353..1798358,1798575..1798583)) /locus_tag="Alide_1740" /note="putative MPT binding site; other site" /db_xref="CDD:58168" gene complement(1799371..1799946) /locus_tag="Alide_1741" /db_xref="GeneID:10103788" CDS complement(1799371..1799946) /locus_tag="Alide_1741" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_2657 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="gcn5-related n-acetyltransferase" /protein_id="YP_004126381.1" /db_xref="GI:319762444" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10103788" /translation="MTREPAAAPRITVLAAAHAPAYKALRDEALRCAPEAFTSDYATA VQRPAQSYAPRLSMPADEGFFLGAWDADGALLGSIGCQREERAQQRHMATVVAMMVAP QAQRRGIGRQLLRACLAQAERMAGLEQLVLTVTAGNAHAVRLYQRAGFTPYGLLPRAI VVAGVGHDKLHMLRLLPSSPLWQPIAPHEDH" misc_feature complement(1799494..1799742) /locus_tag="Alide_1741" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(1799943..1800575) /locus_tag="Alide_1742" /db_xref="GeneID:10103789" CDS complement(1799943..1800575) /locus_tag="Alide_1742" /inference="protein motif:TFAM:TIGR02665" /note="TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: dia:Dtpsy_1970 molybdopterin-guanine dinucleotide biosynthesis protein MobA" /codon_start=1 /transl_table=11 /product="molybdopterin-guanine dinucleotide biosynthesis protein a" /protein_id="YP_004126382.1" /db_xref="GI:319762445" /db_xref="GO:0003824" /db_xref="InterPro:IPR013482" /db_xref="GeneID:10103789" /translation="MIDTHDITGLILAGGRGSRMGGVDKGLQNFRGMPLALHALMRLS PQVGSVMINANRNLSAYESFGMPVWPDGLADYAGPLAGFLCGLERCETPWLLTVPCDT PLFPADLASRLAAAAAIQGADIAMASAPEQEDDGSTRVRTQPVFCLLRVSLLESLMRF TQEGGRKIDRWTAQHPCAIVAFDQPGDDPLAFRNANTLAELHALEGQGSP" misc_feature complement(1799955..1800566) /locus_tag="Alide_1742" /note="molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed; Region: mobA; PRK00317" /db_xref="CDD:178976" misc_feature complement(1799973..1800557) /locus_tag="Alide_1742" /note="MobA catalyzes the formation of molybdopterin guanine dinucleotide; Region: MobA; cd02503" /db_xref="CDD:133000" misc_feature complement(order(1800273..1800275,1800279..1800281, 1800330..1800332,1800339..1800344,1800363..1800365, 1800417..1800419,1800501..1800503,1800528..1800530, 1800534..1800542)) /locus_tag="Alide_1742" /note="GTP binding site [chemical binding]; other site" /db_xref="CDD:133000" gene complement(1800579..1801748) /locus_tag="Alide_1743" /db_xref="GeneID:10103790" CDS complement(1800579..1801748) /locus_tag="Alide_1743" /inference="protein motif:TFAM:TIGR02666" /note="TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: dia:Dtpsy_1969 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein a" /protein_id="YP_004126383.1" /db_xref="GI:319762446" /db_xref="GO:0046872" /db_xref="InterPro:IPR000385" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR010505" /db_xref="InterPro:IPR013483" /db_xref="GeneID:10103790" /translation="MGHNLAMAERVIPLVDHRSRPLRPAVPATAAAAAMPATGELYDT RARPLRDLRISVTDRCNFRCSYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHG VHKIRLTGGEPLLRKDLELLVEQLAGLRTTEGRVPDLTLTTNGSLLARKARALKAAGL QRVTVSLDSLDDAVFRRMNDVDFPVAEVLAGIEAAQAAGFGTIKVNMVVKRGTNDHEI LRMARHFRGTGITLRFIEFMDVGATNGWRMDQVVPSREVIARLQSELPLVPLSPTAVG ETAQRWGYAGADGRHDPSLGEVGVIGSVTQAFCGDCNRARLSMEGRLYLCLFATQGWD LRSLLRSDASDAQISAAIAHIWQGRGDRYSELRASLPPDQGEERGRRIEMSYIGG" misc_feature complement(1800582..1801637) /locus_tag="Alide_1743" /note="molybdenum cofactor biosynthesis protein A; Reviewed; Region: moaA; PRK00164" /db_xref="CDD:178909" misc_feature complement(1800975..1801589) /locus_tag="Alide_1743" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(1801038..1801040,1801047..1801049, 1801125..1801127,1801251..1801253,1801317..1801325, 1801413..1801418,1801422..1801424,1801545..1801553, 1801557..1801559,1801563..1801565,1801569..1801571)) /locus_tag="Alide_1743" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature complement(1800657..1801061) /locus_tag="Alide_1743" /note="Molybdenum Cofactor Synthesis C; Region: Mob_synth_C; pfam06463" /db_xref="CDD:115139" gene 1801840..1802718 /locus_tag="Alide_1744" /db_xref="GeneID:10103791" CDS 1801840..1802718 /locus_tag="Alide_1744" /inference="similar to AA sequence:KEGG:Ajs_1750" /note="KEGG: ajs:Ajs_1750 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126384.1" /db_xref="GI:319762447" /db_xref="GeneID:10103791" /translation="MAARRAGRKIRPMRDTCFLPVPSSAACRRRDRRLALRVLGTGLL APALPLSAQARMALATAINRTARFRALSQRMAKAYGQLYLNVRPVRARDVLEHTRRQV RSGFEDMAHPGWPPEVARLLADVRRSADRLNALAEQAPSRSVFQAVSAQADQMLALAD TATQALERQAQVPTARLVNTAGRQRMLSQRMAKNYELVAAGLDGRTVREQLAGDADEF QRAMARLSEAPISTPAIRSALELGQAQWLFFDAALKRQPDGRGLEEVATTSERLLEVM DGLTALYEAALRDLLG" gene complement(1802777..1803334) /locus_tag="Alide_1745" /db_xref="GeneID:10103792" CDS complement(1802777..1803334) /locus_tag="Alide_1745" /inference="similar to AA sequence:KEGG:Ajs_1755" /note="KEGG: ajs:Ajs_1755 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126385.1" /db_xref="GI:319762448" /db_xref="GeneID:10103792" /translation="MPLSPPAPRTARHIRRITYQGFEREDGLWDIEGELHDSKTHDLP SRRNPGRTRRAGEPIHHMWLRVTVDRNLVVQAIESAMDDHPLAGCPEAQRALQAMVGC SMTRGWRQSIQIHLGGVASCTHLRELLFNLATATFQSVESAFQSQGDEPPRHLGQCTG WDFHGQAVKEHYPQFYGHTPQLLKK" misc_feature complement(1802918..1803298) /locus_tag="Alide_1745" /note="Protein of unknown function (DUF2889); Region: DUF2889; pfam11136" /db_xref="CDD:151580" gene complement(1803344..1804777) /locus_tag="Alide_1746" /db_xref="GeneID:10103793" CDS complement(1803344..1804777) /locus_tag="Alide_1746" /inference="protein motif:PFAM:PF00171" /note="PFAM: Aldehyde Dehydrogenase; KEGG: dia:Dtpsy_1966 aldehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="YP_004126386.1" /db_xref="GI:319762449" /db_xref="GO:0016491" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR016160" /db_xref="GeneID:10103793" /translation="MQLHYIANAGVASASGRTIAVIDPSDGQPYDEIQRGTAEDIDAA VRAAQQCYDTVWRKLAPAERGRLLQRLSAKITEHAEELAAIEQRDCGKPTRQARADAA ALARYFEFYAGACDKLHGETIPYQDGFSVLTWREPHGVTGHIVPWNYPMQIFGRCVGA ALAAGNVCVVKPAEDACLSLLHVAQLAAEAGFPAGALNIVTGYGHEVGDALARHPGIH HISFTGSPKVGTLIQQAAAERHCPVTLELGGKSPQIIFADADLDAAVPVVINAIVQNA GQTCSAGSRVLIDSLIYEPLLERLGQAFEKLRVGPAAMDLDVGPLIRQTQQQRVWDFL SDAQVAGIPMVAQGVVVDEAPETGYYQAPTLLRDVPVGHRLAQEEVFGPVLSAMAFQD EDHAVELANATQFGLVAGIWTRDGARQFRMARRVASGQVFINNYGAGGGVELPFGGVK SSGHGREKGFEALYGFTTLKTVAIRHG" misc_feature complement(1803362..1804741) /locus_tag="Alide_1746" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(1803356..1804717) /locus_tag="Alide_1746" /note="Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like; Region: ALDH_AAS00426; cd07109" /db_xref="CDD:143427" misc_feature complement(order(1803440..1803442,1803557..1803559, 1803635..1803637,1803641..1803643,1803938..1803940, 1804034..1804042,1804082..1804087,1804094..1804096, 1804103..1804114,1804256..1804261,1804265..1804267, 1804310..1804312,1804334..1804348)) /locus_tag="Alide_1746" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143427" misc_feature complement(order(1803938..1803940,1803947..1803949, 1804040..1804042,1804334..1804336)) /locus_tag="Alide_1746" /note="catalytic residues [active]" /db_xref="CDD:143427" misc_feature complement(order(1803938..1803940,1803947..1803949, 1804040..1804042)) /locus_tag="Alide_1746" /note="catalytic residues [active]" /db_xref="CDD:143427" gene complement(1804942..1807023) /locus_tag="Alide_1747" /db_xref="GeneID:10103794" CDS complement(1804942..1807023) /locus_tag="Alide_1747" /EC_number="3.6.1.1" /inference="protein motif:TFAM:TIGR01104" /note="TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: dia:Dtpsy_1965 membrane-bound proton-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase" /codon_start=1 /transl_table=11 /product="v-type h(+)-translocating pyrophosphatase" /protein_id="YP_004126387.1" /db_xref="GI:319762450" /db_xref="GO:0004427" /db_xref="GO:0009678" /db_xref="InterPro:IPR004131" /db_xref="GeneID:10103794" /translation="MTEPSALTSPLILALACGLIAVVYGIWARSWILAKDQGNARMQE IAAAIQTGAAAYLARQYKTISLVGIVLAVLIGVFLDVNTAVGFVIGAVLSGACGFIGM NVSVRANVRTAQAATQGMGPALQVAFRGGAITGMLVVGLGLLGVTAFAWFLVGNGRLT PTANLPALLNPLIGFAFGSSLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRN PAVIADNVGDNVGDCAGMAADLFETYAVTLIATMVLGALLVGAAPVAAVAYPLALGAV SIVASIIGCFFVKASPGMKNVMPALYRGLAIAGVLSLAAFWFVTAWVVPDNALGGTGA QARLFGACATGLVLTAALVWITEFYTGTQYSPVRHIAQASTTGHGTNIIAGLGVSMRS TAWPVLFVCVAIIVSYMLADLYGVAVAAMSMLSMAGIVVALDAYGPITDNAGGIAEMA ELPSSVRDITDPLDAVGNTTKAVTKGYAIGSAGLAALVLFADYTHKLESYGQAIRFDL SDPMVIVGLFIGGLIPYLFGAMAMEAVGRAAGSVVVEVRRQFAEIKGIMEGTAKPEYG RAVDMLTSAAIKEMIVPSLLPVAVPIVVGLALGPKALGGLLMGTIVTGLFVAISMCTG GGAWDNAKKYIEDGNHGGKGSEAHKAAVTGDTVGDPYKDTAGPAVNPLIKIINIVALL IVPLVVKFHAG" misc_feature complement(1804951..1807005) /locus_tag="Alide_1747" /note="Inorganic pyrophosphatase [Energy production and conversion]; Region: OVP1; cl11452" /db_xref="CDD:187048" misc_feature complement(1804945..1806930) /locus_tag="Alide_1747" /note="membrane-bound proton-translocating pyrophosphatase; Validated; Region: hppA; PRK00733" /db_xref="CDD:179102" gene 1807238..1807771 /locus_tag="Alide_1748" /db_xref="GeneID:10103795" CDS 1807238..1807771 /locus_tag="Alide_1748" /EC_number="3.6.1.1" /inference="protein motif:PRIAM:3.6.1.1" /note="KEGG: dia:Dtpsy_1964 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase" /codon_start=1 /transl_table=11 /product="inorganic diphosphatase" /protein_id="YP_004126388.1" /db_xref="GI:319762451" /db_xref="InterPro:IPR008162" /db_xref="GeneID:10103795" /translation="MSLNNVKPGKNIPEAFNVVIEIPAESDPVKYEVDKESGAVFVDR FLTTAMYYPCNYGYVPQTLSGDGDPVDVLVITPYPLHPGVVVPCRALGILKMEDEAGV DGKVLAVPTTKILKMYENWKSVQDVNPMRLKAISHFFEHYKDLEEGKWVKVLGWEGVD AANKEVLDGVENYKKSL" misc_feature 1807277..1807750 /locus_tag="Alide_1748" /note="Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers; Region: pyrophosphatase; cd00412" /db_xref="CDD:29533" misc_feature order(1807307..1807312,1807469..1807474) /locus_tag="Alide_1748" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29533" misc_feature order(1807325..1807327,1807367..1807369,1807403..1807405, 1807661..1807666) /locus_tag="Alide_1748" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29533" misc_feature order(1807331..1807333,1807433..1807435,1807448..1807450, 1807529..1807531,1807544..1807546) /locus_tag="Alide_1748" /note="metal binding sites [ion binding]; metal-binding site" /db_xref="CDD:29533" gene 1807973..1808479 /locus_tag="Alide_1749" /db_xref="GeneID:10103796" CDS 1807973..1808479 /locus_tag="Alide_1749" /inference="protein motif:PFAM:PF01584" /note="KEGG: ajs:Ajs_1759 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein" /codon_start=1 /transl_table=11 /product="chew domain protein" /protein_id="YP_004126389.1" /db_xref="GI:319762452" /db_xref="GO:0004871" /db_xref="InterPro:IPR002545" /db_xref="GeneID:10103796" /translation="MLSSAAQRSSTGSAAASAAAEFLTFRLGQEEYGIDILRVQEIRS YEQPTRMAHAPEFIKGVIDLRGVIVPIVDLRLKLHCATAEYTDFTVVIILNVGGTVLG AVVDAVADVVALPADAIKPAPQFQGQVDAAFVRGIATVDKRMLIVMDIESLLSSAEMG LVQSVAVA" misc_feature 1808033..1808446 /locus_tag="Alide_1749" /note="CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and...; Region: CheW_like; cl00256" /db_xref="CDD:185867" gene 1808492..1810249 /locus_tag="Alide_1750" /db_xref="GeneID:10103797" CDS 1808492..1810249 /locus_tag="Alide_1750" /inference="protein motif:PFAM:PF00015" /note="KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein" /codon_start=1 /transl_table=11 /product="chemotaxis sensory transducer" /protein_id="YP_004126390.1" /db_xref="GI:319762453" /db_xref="GO:0004871" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:10103797" /translation="MRLSDMRVGVKLGLAFAAMALLNLVLGGLAVVWLGHVNEDTREI ANKWLPSVQALGDMRATANRLRASEIGAVLGSDPQLVPRLREDVAAVGRLLGEAEQRY APMVAPSEAPLYAEFKNHRDAYLRAQARLMEMVADESRRAEAAHMLYGESQKTFINMA ETIGKLSRASHEGSQAAYAESQQTFGSARGSVIAVLAVVIAAAIALGLWITRLVTRPV AHAVQAAREIAQGNLAASLSVHGRDELGQLTQALVDMQANLARVVSDVRANAESVATA SAQIAQGNGDLSARTESQASALQETAASMEQLGATVRQNADNAAQANQLAMSASTVAA QGGEVVSEVVDTMRGINDASHKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF AVVAGEVRSLAQRSAEAAKEIKQLITASVERVEQGTQLVDKAGETMTEVVGAIRRVTD IVGEISAASSEQSSGVAQVGEAITQMDQATQRNAALVEESAAAASSLKAQAAQLVQAV AVFRLAQGGGGAIAPRPSPAAAVPAAAPQPRVAAPAPAPKAAPPRKPAAPAPNAAAPA AQRPRLAVVPKNDDDWESF" misc_feature 1808504..1809046 /locus_tag="Alide_1750" /note="Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_2; pfam12729" /db_xref="CDD:193205" misc_feature <1809110..1809268 /locus_tag="Alide_1750" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 1809473..1809940 /locus_tag="Alide_1750" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(1810246..1811469) /locus_tag="Alide_1751" /db_xref="GeneID:10103798" CDS complement(1810246..1811469) /locus_tag="Alide_1751" /inference="protein motif:PFAM:PF04339" /note="PFAM: protein of unknown function DUF482; KEGG: vei:Veis_1736 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126391.1" /db_xref="GI:319762454" /db_xref="InterPro:IPR007434" /db_xref="GeneID:10103798" /translation="MARPEPLHQPLPAPTYELRVADSPAHIDSAAWDALLARQSHPTP FLRHAYLAALHDSSSATPRTGWAPRFVTLWQGGVLAAACALYLKSHSYGEYVFDWAWA NAYEQHGVPYYPKAVAAVPFTPVPGTRLLARDAAARSALLRALVDWCRAQDLSSLHLL FMAQEDVQEAQAQGLMLRHTVQFHWQNAGYRDFDDFLASLSQDKRKKIRQERRKVQEA GVTFRWARGAQITPADWDFFYRCYERTYLEHGNPPYLARDFFARMAAHLPEAWLLFVA ERSGRPIASSLIAISAFPSSAECQKNPEPLVAYGRYWGALERVDCLHFEACYYQPLQW CIAHGVRRFEGGAQGEHKMARALMPVQATSAHWLAHPAFADAVQRFLEREGEGVAHYL EELHAHSPFRREAGG" misc_feature complement(1810258..1811430) /locus_tag="Alide_1751" /note="FemAB family; Region: FemAB; cl11444" /db_xref="CDD:196237" misc_feature complement(1810261..1811403) /locus_tag="Alide_1751" /note="Protein of unknown function, DUF482; Region: DUF482; pfam04339" /db_xref="CDD:146791" gene complement(1811501..1811734) /locus_tag="Alide_1752" /pseudo /db_xref="GeneID:10103799" gene 1811765..1813423 /locus_tag="Alide_1753" /db_xref="GeneID:10103800" CDS 1811765..1813423 /locus_tag="Alide_1753" /inference="protein motif:TFAM:TIGR00552" /note="KEGG: vei:Veis_1737 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase" /codon_start=1 /transl_table=11 /product="nad+ synthetase" /protein_id="YP_004126392.1" /db_xref="GI:319762455" /db_xref="GO:0003952" /db_xref="GO:0005524" /db_xref="InterPro:IPR003010" /db_xref="InterPro:IPR003694" /db_xref="InterPro:IPR014445" /db_xref="GeneID:10103800" /translation="MPLAISIAQLNFVVGDLQGNAQKIIDAARQAYAAGARLLLTPEL AICGYAAEDLFLRPAFLAACDEAVQAVARGTADLAGLAIVLGHPRAAAPGAPAFSSCL NAASVLRAGRVEQTYTKRELPNYQVFDERRYFVAGDAPCVFEVEGVRVGLLICEDAWF SAPARDAATAGAQLLAVINASPFHLGKGAEREQTMRERVAETGLPLVYAHLVGGQDEV VFEGRSFALNADGTVAMRAPAFEEKLVFAQVHQAQAAIEMEADVAPERSLEADLWDAL VLGVRDYVGKNGFPGALLGLSGGIDSALVLAIAVDALGADKVRTVMMPSPYTADISWI DARDMAARLGVRYDEIAIAPQFEAFKAALAPLFEGRAEDTTEENLQARIRGTLLMALS NKFGAVVLTTGNKSEMATGYCTLYGDMAGGFAVIKDVVKTRVFDLARWRNANDPYGTG ANPIPERIIIRPPSAELRPDQKDQDSLPPYEVLDAILARYMENDEPVEDIVRAGYDRA DVERVTRLIKINEYKRRQAPVGVRVTRRSFGKDWRYPITNKFRA" misc_feature 1811771..1813417 /locus_tag="Alide_1753" /note="NAD synthetase; Provisional; Region: PRK13981" /db_xref="CDD:184436" misc_feature 1811777..1812499 /locus_tag="Alide_1753" /note="Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases); Region: GAT_Gln-NAD-synth; cd07570" /db_xref="CDD:143594" misc_feature order(1811804..1811818,1811915..1811926,1811930..1811941, 1811948..1811950,1812032..1812034,1812047..1812052, 1812125..1812133,1812137..1812145,1812149..1812151, 1812155..1812160,1812167..1812172,1812176..1812178, 1812230..1812232,1812236..1812244,1812245..1812247, 1812257..1812262,1812266..1812268,1812275..1812277, 1812311..1812322,1812329..1812331,1812341..1812343, 1812350..1812355,1812362..1812367,1812401..1812415, 1812419..1812421,1812479..1812481) /locus_tag="Alide_1753" /note="multimer interface [polypeptide binding]; other site" /db_xref="CDD:143594" misc_feature order(1811891..1811893,1812119..1812121,1812131..1812133, 1812137..1812139,1812146..1812148,1812152..1812154, 1812227..1812232,1812239..1812241,1812323..1812325) /locus_tag="Alide_1753" /note="active site" /db_xref="CDD:143594" misc_feature order(1811891..1811893,1812119..1812121,1812227..1812229) /locus_tag="Alide_1753" /note="catalytic triad [active]" /db_xref="CDD:143594" misc_feature order(1812125..1812133,1812137..1812145,1812149..1812151, 1812176..1812178,1812230..1812232,1812236..1812244, 1812245..1812247,1812257..1812262,1812311..1812322, 1812329..1812331,1812341..1812343,1812350..1812355, 1812362..1812367,1812401..1812403,1812407..1812415, 1812419..1812421,1812479..1812481) /locus_tag="Alide_1753" /note="protein interface 1 [polypeptide binding]; other site" /db_xref="CDD:143594" misc_feature 1812569..1813336 /locus_tag="Alide_1753" /note="NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to...; Region: NAD_synthase; cd00553" /db_xref="CDD:30166" misc_feature order(1812587..1812592,1812599..1812601,1812608..1812613, 1812800..1812811,1812818..1812823,1812830..1812835, 1812887..1812889,1812899..1812901,1812908..1812913, 1812917..1812925,1812929..1812937,1812941..1812946, 1813007..1813012,1813019..1813036,1813043..1813048, 1813328..1813330,1813334..1813336) /locus_tag="Alide_1753" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:30166" misc_feature order(1812644..1812655,1812668..1812670,1812725..1812733, 1812884..1812886,1812896..1812898,1812905..1812910, 1812914..1812916,1812968..1812970,1812983..1812985, 1812998..1813009,1813016..1813018,1813154..1813159, 1813163..1813165,1813190..1813192,1813328..1813333) /locus_tag="Alide_1753" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:30166" misc_feature order(1812647..1812655,1812665..1812670,1812728..1812733, 1812914..1812916,1812968..1812970,1813055..1813057, 1813151..1813156) /locus_tag="Alide_1753" /note="ATP binding pocket [chemical binding]; other site" /db_xref="CDD:30166" misc_feature order(1812653..1812655,1812665..1812667,1812983..1812985, 1813154..1813156) /locus_tag="Alide_1753" /note="Mg binding site [ion binding]; other site" /db_xref="CDD:30166" misc_feature order(1812752..1812754,1813142..1813165,1813172..1813195) /locus_tag="Alide_1753" /note="active-site loop [active]" /db_xref="CDD:30166" gene 1813474..1813812 /locus_tag="Alide_1754" /db_xref="GeneID:10103801" CDS 1813474..1813812 /locus_tag="Alide_1754" /inference="protein motif:PFAM:PF00543" /note="PFAM: nitrogen regulatory protein P-II; KEGG: dia:Dtpsy_1960 nitrogen regulatory protein P-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein p-ii" /protein_id="YP_004126393.1" /db_xref="GI:319762456" /db_xref="GO:0030234" /db_xref="InterPro:IPR002187" /db_xref="InterPro:IPR002332" /db_xref="InterPro:IPR017918" /db_xref="GeneID:10103801" /translation="MQMITAVIKPFKLEEVREALAECGVTGLTVTEVKGFGRQKGHTE LYRGAEYVVDFLPKVKIEVVVRTEDVDRCVDAIVAAARTGKIGDGKIFVTAVERVVRI RTGDLDDAAV" misc_feature 1813483..1813788 /locus_tag="Alide_1754" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene complement(1813822..1814415) /locus_tag="Alide_1755" /db_xref="GeneID:10103802" CDS complement(1813822..1814415) /locus_tag="Alide_1755" /inference="protein motif:PFAM:PF03641" /note="PFAM: Conserved hypothetical protein CHP00730; KEGG: dia:Dtpsy_1959 hypothetical protein" /codon_start=1 /transl_table=11 /product="conserved hypothetical protein chp00730" /protein_id="YP_004126394.1" /db_xref="GI:319762457" /db_xref="InterPro:IPR005269" /db_xref="GeneID:10103802" /translation="MADAAFSICVYLGSRPGNNSLFTEAAVAVGRWIGQHGGQLVYGG GRSGLMGTVAEATRLAGGRVVGIIPQALVDKELANHLCDELHVVTSMHERKAMMAERS DAFLALPGGIGTLEELFEVWTWRQLGYHDKPVGLLDTNGYYGGLLDFLRHSERCGLMS EWQMGLIRTGIEPAALLAALVQDAGLSASTIPLRDVI" misc_feature complement(1813879..1814397) /locus_tag="Alide_1755" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene complement(1814408..1814806) /locus_tag="Alide_1756" /db_xref="GeneID:10103803" CDS complement(1814408..1814806) /locus_tag="Alide_1756" /inference="protein motif:PFAM:PF01219" /note="PFAM: diacylglycerol kinase; KEGG: dia:Dtpsy_1958 diacylglycerol kinase" /codon_start=1 /transl_table=11 /product="diacylglycerol kinase" /protein_id="YP_004126395.1" /db_xref="GI:319762458" /db_xref="GO:0004143" /db_xref="InterPro:IPR000829" /db_xref="GeneID:10103803" /translation="MSLPPASPHPHKQRTGLNRLWHATGYSVAGLRAGWGEKAFRQEL CLAAVLLPLAFWLGNGWTETALLAGTVVLVLITELLNSGIEAAIDRIGPELHELSKRA KDMGSAAVLLSLLLCGATWAAALYQRFIHG" misc_feature complement(1814414..1814779) /locus_tag="Alide_1756" /note="Prokaryotic diacylglycerol kinase; Region: DAGK_prokar; cl00526" /db_xref="CDD:153830" gene complement(1814869..1815441) /locus_tag="Alide_1757" /db_xref="GeneID:10103804" CDS complement(1814869..1815441) /locus_tag="Alide_1757" /inference="protein motif:PFAM:PF06271" /note="PFAM: RDD domain containing protein; KEGG: ajs:Ajs_1765 RDD domain-containing protein" /codon_start=1 /transl_table=11 /product="rdd domain containing protein" /protein_id="YP_004126396.1" /db_xref="GI:319762459" /db_xref="InterPro:IPR010432" /db_xref="GeneID:10103804" /translation="MHAPSQPGSTQSSNAATPSPPAPSAGTMAPPLYRRMACWLYEGM LMFGVVFIAGYLFGTLTQTRHALDNRHALQAFLFVVFGIYFVWFWSRGHTLAMKTWHI RVVDSQGRAISQWRALLRYLLSWLWFLPPLAAYAAGIPVLATLLLLTLWVIFWALASY LHPQRQFWHDALAGTRLVHHELPPRPRKNK" misc_feature complement(<1815103..1815342) /locus_tag="Alide_1757" /note="RDD family; Region: RDD; cl00746" /db_xref="CDD:193923" gene complement(1815469..1816293) /locus_tag="Alide_1758" /db_xref="GeneID:10103805" CDS complement(1815469..1816293) /locus_tag="Alide_1758" /inference="similar to AA sequence:KEGG:Ajs_1766" /note="KEGG: ajs:Ajs_1766 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004126397.1" /db_xref="GI:319762460" /db_xref="GeneID:10103805" /translation="MHAPSGSTPAYTLPAFLLAFVLLSALAAAGWWMAIYVRIAPSTP VPAQALHAGKHRVLGEPRLPPQPEAGPPWTALTTAQKEALYPLADRWSVLSEVQKRNW LSLAAGFHALSPEEQQKMLARITDWASLSAQQRSQARLNYAAAAQLPADSRRAQWEAY QALSAEEKKRLAAKAAPRPRGAATAVRPVSPKKLARVPAAADTPPAVPNPPKIVAPEL IHTPQVLPAPAPAVVETAPIATPSAVPASLPPLQPASVPDAREEPVRDLTPLHPPQ" sig_peptide complement(1816210..1816293) /locus_tag="Alide_1758" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.573 at residue 28" misc_feature complement(1815811..1816080) /locus_tag="Alide_1758" /note="Protein of unknown function (DUF3106); Region: DUF3106; pfam11304" /db_xref="CDD:151745" gene complement(1816317..1816778) /locus_tag="Alide_1759" /db_xref="GeneID:10103806" CDS complement(1816317..1816778) /locus_tag="Alide_1759" /inference="similar to AA sequence:KEGG:Dtpsy_1955" /note="KEGG: dia:Dtpsy_1955 transmembrane protein" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004126398.1" /db_xref="GI:319762461" /db_xref="GeneID:10103806" /translation="MNRTTEPTMQAAQAADAYARRLAARLTHGNADLPYDITERLRAA RMQALARRKRPVSLPVRETAAAPQVVSNGSTAALGGWGREDGTWWRALVSAVPLAALV VGLFFVNMVQDDAVATEIAEVDAALLTDDLPPSAYADPGFLQFLKSANQTR" misc_feature complement(1816338..1816703) /locus_tag="Alide_1759" /note="Protein of unknown function (DUF3619); Region: DUF3619; pfam12279" /db_xref="CDD:152714" gene complement(1816775..1817344) /locus_tag="Alide_1760" /db_xref="GeneID:10103807" CDS complement(1816775..1817344) /locus_tag="Alide_1760" /inference="protein motif:TFAM:TIGR02937" /note="KEGG: dia:Dtpsy_1954 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor, sigma-70 family" /protein_id="YP_004126399.1" /db_xref="GI:319762462" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0016987" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:10103807" /translation="MATEHELSDFLKSVDKRAFKRTLYHVRNEEAALDIVQDSMLKLA EHYGDKPPGELPMLFQRILTNCTLDWFRRQKTRNALFSSLSDFEGPGEDGADFDLLEV HAGLPEGETAQSAEDTLRRTQVLQAIEIEIQQLPARQREAFLMRYWEEMDVSETAAAM GCSEGSVKTHCFRAVQSLSKALKAKGIVL" misc_feature complement(1816778..1817269) /locus_tag="Alide_1760" /note="RNA polymerase factor sigma-70; Validated; Region: PRK09047" /db_xref="CDD:181623" misc_feature complement(1816811..1816951) /locus_tag="Alide_1760" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature complement(order(1816820..1816822,1816826..1816831, 1816835..1816843,1816847..1816852,1816856..1816858, 1816886..1816891,1816907..1816909,1816937..1816939)) /locus_tag="Alide_1760" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene 1817633..1819426 /locus_tag="Alide_1761" /db_xref="GeneID:10103808" CDS 1817633..1819426 /locus_tag="Alide_1761" /inference="protein motif:TFAM:TIGR00118" /note="KEGG: ajs:Ajs_1769 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein" /codon_start=1 /transl_table=11 /product="acetolactate synthase, large subunit, biosynthetic type" /protein_id="YP_004126400.1" /db_xref="GI:319762463" /db_xref="GO:0000287" /db_xref="GO:0003984" /db_xref="GO:0030976" /db_xref="GO:0050660" /db_xref="InterPro:IPR011766" /db_xref="InterPro:IPR012000" /db_xref="InterPro:IPR012001" /db_xref="InterPro:IPR012846" /db_xref="GeneID:10103808" /translation="MEISKAEISSAAQAARGGNPHASGTQELMGAEILVKALQAENVQ YMWGYPGGAVLYIYDALYKQESIQHVLVRHEQAAVHAADGYARATGEVGVALVTSGPG LTNAVTGIATAYMDSIPMVIISGQVPTPAIGLDAFQECDTVGITRPIVKHNFLVKDVR DLALTLKKAFHIARTGRPGPVVVDIPKDVSFKKTAYHGYPQSVEMRSYNPVKKGHAGQ IRKALQLLLGAKRPYIYTGGGVLLGNATQELRALVDMLGYPVTNTLMGLGAYPATDRK FLGMLGMHGTIEANNTMQNCDVLLAVGARFDDRVIGNPKHFAQNDRKIIHIDIDPSSI SKRVKVDIPIVGDVKEVLTELISMIRESTTRPDAGALSAWWDQIEAWRGRDCLKYDRG NTEVIKPQHVIETLWNMTKDADAYITSDVGQHQMWAAQYYKFDEPRRWINSGGLGTMG VGIPYAMGIKLAKPDAEVFCVTGEGSVQMNIQELSTCLQYNTPIKILSLNNRYLGMVR QWQEIEYSGRYSHSYMDALPNFVKLAEAYGHVGMLIERPQDVEPALREARKLKDRTVF LDFRTDPTENVFPMVQAGKGITEMLLGSEDL" misc_feature 1817633..1819423 /locus_tag="Alide_1761" /note="acetolactate synthase 3 catalytic subunit; Validated; Region: PRK06965" /db_xref="CDD:180780" misc_feature 1817726..1818193 /locus_tag="Alide_1761" /note="Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035" /db_xref="CDD:132918" misc_feature order(1817765..1817767,1817780..1817785,1817795..1817797, 1817807..1817809,1817834..1817854,1817861..1817863, 1817870..1817875,1817882..1817887,1817891..1817899, 1817933..1817935,1817954..1817956,1817966..1817968, 1817975..1817980) /locus_tag="Alide_1761" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature order(1817780..1817788,1817795..1817797,1817807..1817809, 1817837..1817839,1817843..1817854,1817858..1817860, 1817933..1817935,1817942..1817947,1817951..1817956, 1817963..1817965,1818065..1818067,1818074..1818076) /locus_tag="Alide_1761" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature order(1817780..1817782,1817855..1817857,1817933..1817935, 1817945..1817947) /locus_tag="Alide_1761" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132918" misc_feature 1818287..1818697 /locus_tag="Alide_1761" /note="Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205" /db_xref="CDD:189448" misc_feature 1818821..1819384 /locus_tag="Alide_1761" /note="Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015" /db_xref="CDD:48178" misc_feature order(1818893..1818904,1818971..1818973,1818977..1818979, 1819052..1819060,1819067..1819069,1819133..1819135) /locus_tag="Alide_1761" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48178" misc_feature order(1818962..1818964,1818971..1818973,1818977..1818979, 1819064..1819069,1819073..1819078,1819097..1819099, 1819214..1819219,1819229..1819231,1819238..1819240) /locus_tag="Alide_1761" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48178" gene 1819614..1820105 /locus_tag="Alide_1762" /db_xref="GeneID:10103809" CDS 1819614..1820105 /locus_tag="Alide_1762" /inference="protein motif:TFAM:TIGR00119" /note="KEGG: ctt:CtCNB1_1659 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein" /codon_start=1 /transl_table=11 /product="acetolactate synthase, small subunit" /protein_id="YP_004126401.1" /db_xref="GI:319762464" /db_xref="GO:0003984" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR004789" /db_xref="InterPro:IPR019455" /db_xref="GeneID:10103809" /translation="MKHIIAVLIENEAGALSRVVALFSARGYNIESLTVAPTEDPSLS RMTIQTTGSDDVIEQITKHLNRLIEVVKVVDLTEGAYTERELMMVKVRAVGKEREEMK RMADIFRGRIIDVTDKSYTVELTGDQSKNDAFLQAIDRTAILETVRTGASGIGRGERI LRV" misc_feature 1819614..1820096 /locus_tag="Alide_1762" /note="acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895" /db_xref="CDD:183365" misc_feature 1819620..1819835 /locus_tag="Alide_1762" /note="N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878" /db_xref="CDD:153150" misc_feature order(1819638..1819640,1819644..1819646,1819659..1819661, 1819698..1819703,1819716..1819718,1819743..1819745) /locus_tag="Alide_1762" /note="putative valine binding site [chemical binding]; other site" /db_xref="CDD:153150" misc_feature order(1819650..1819655,1819662..1819664,1819683..1819685, 1819692..1819694,1819704..1819718,1819746..1819748) /locus_tag="Alide_1762" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153150" misc_feature 1819860..1820084 /locus_tag="Alide_1762" /note="Small subunit of acetolactate synthase; Region: ALS_ss_C; pfam10369" /db_xref="CDD:150959" gene 1820174..1821190 /locus_tag="Alide_1763" /db_xref="GeneID:10103810" CDS 1820174..1821190 /locus_tag="Alide_1763" /EC_number="1.1.1.86" /inference="protein motif:TFAM:TIGR00465" /note="TIGRFAM: ketol-acid reductoisomerase; KEGG: dia:Dtpsy_1951 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase" /codon_start=1 /transl_table=11 /product="ketol-acid reductoisomerase" /protein_id="YP_004126402.1" /db_xref="GI:319762465" /db_xref="GO:0016491" /db_xref="InterPro:IPR000506" /db_xref="InterPro:IPR013023" /db_xref="InterPro:IPR013116" /db_xref="GeneID:10103810" /translation="MKVFYDKDCDLSLIKGKTVAIIGYGSQGHAHAQNLNDSGVKVVV GLRKGGASWDKVGKAGLTVKEVNDAVKEADVVMILLPDEQIAEVYKNNVEPNIKQGAS LAFAHGFNVHYNQVVPRADLDVWMVAPKAPGHTVRNTYTQGGGVPHLVAVHQDKSGRA RELALSYAMANGGGKAGIIETNFREETETDLFGEQAVLCGGAVELIKMGYETLVEAGY APEMAYFECLHELKLIVDLIYEGGIANMNYSISNNAEYGEYVTGPEVINEQSRAAMRN ALKRIQDGEYAKMFIQEGRLNYPSMTARRRNLAAHSIEQVGAQLRAMMPWIAKNKLVD QSRN" misc_feature 1820174..1821160 /locus_tag="Alide_1763" /note="ketol-acid reductoisomerase; Provisional; Region: PRK05479" /db_xref="CDD:180113" misc_feature 1820210..1820704 /locus_tag="Alide_1763" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1820720..1821154 /locus_tag="Alide_1763" /note="Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450" /db_xref="CDD:110451" gene 1821368..1822204 /locus_tag="Alide_1764" /db_xref="GeneID:10103811" CDS 1821368..1822204 /locus_tag="Alide_1764" /inference="protein motif:TFAM:TIGR00473" /note="KEGG: vei:Veis_1753 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase" /codon_start=1 /transl_table=11 /product="cdp-diacylglycerol/serine o-phosphatidyltransferase" /protein_id="YP_004126403.1" /db_xref="GI:319762466" /db_xref="GO:0003882" /db_xref="InterPro:IPR000462" /db_xref="InterPro:IPR004533" /db_xref="GeneID:10103811" /translation="MHDGNDVGEGTGVLVRKRRKGIYILPNLFTLAALFGGFYAIVMA MNGRFEMASIGVFCAMVLDSLDGRVARMTNTQSAFGEQMDSLSDMVSFGAAPALIAYV WALQGLGRWGWIAAFVYCACAALRLARFNVNTGVVDKRYFQGLPSPAAAALVMGFIWL LTDAGVRPGQGVLSLSWGQITWVMFGFTLYAGLTMVTNVPFYSFKDLHMKKSVPFSAI VLIALGIAVINIHTPTVLFGVFVLYGLSGYAVYVWRKAKGQHTSVISTSTDEPDEQGL HH" misc_feature 1821413..1822141 /locus_tag="Alide_1764" /note="Phosphatidylserine synthase [Lipid metabolism]; Region: PssA; COG1183" /db_xref="CDD:31376" misc_feature 1821455..1821853 /locus_tag="Alide_1764" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene complement(1822229..1822897) /locus_tag="Alide_1765" /db_xref="GeneID:10103812" CDS complement(1822229..1822897) /locus_tag="Alide_1765" /inference="protein motif:TFAM:TIGR01262" /note="KEGG: tmz:Tmz1t_0854 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain" /codon_start=1 /transl_table=11 /product="maleylacetoacetate isomerase" /protein_id="YP_004126404.1" /db_xref="GI:319762467" /db_xref="GO:0003824" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="InterPro:IPR005955" /db_xref="InterPro:IPR017933" /db_xref="GeneID:10103812" /translation="MLKLYSYFRSSAAYRVRIALALKSLAYDTIPVHLLRDGGQHNGS AYRGANPQGLVPALQMAERGPVLAQSLAIMEYLDEVHPAPALLPADALGRARVRGLAH MVACEIHPLNNLRVLNYLTQELGVSGAQKDAWYAHWVALGLRAVEDVLARSGDTGRFC HGDTPGLADCCLVPQVFNARRFNCALDAYPTIARIVDACEQLPAFRQAAPDMQPDAEH ALAR" misc_feature complement(1822664..1822894) /locus_tag="Alide_1765" /note="GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_N_Zeta; cd03042" /db_xref="CDD:48591" misc_feature complement(1822247..1822891) /locus_tag="Alide_1765" /note="maleylacetoacetate isomerase; Region: maiA; TIGR01262" /db_xref="CDD:162274" misc_feature complement(order(1822673..1822675,1822685..1822687, 1822811..1822813,1822847..1822849,1822853..1822858, 1822874..1822876)) /locus_tag="Alide_1765" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48591" misc_feature complement(order(1822688..1822693,1822733..1822738, 1822775..1822777,1822853..1822855,1822862..1822864, 1822868..1822870)) /locus_tag="Alide_1765" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48591" misc_feature complement(order(1822673..1822675,1822682..1822687, 1822691..1822696,1822736..1822738)) /locus_tag="Alide_1765" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48591" misc_feature complement(1822259..1822621) /locus_tag="Alide_1765" /note="GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_C_Zeta; cd03191" /db_xref="CDD:48118" misc_feature complement(order(1822454..1822456,1822496..1822498, 1822592..1822594,1822604..1822606,1822616..1822618)) /locus_tag="Alide_1765" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48118" misc_feature complement(order(1822259..1822261,1822268..1822270, 1822274..1822276,1822355..1822357,1822364..1822366, 1822379..1822381,1822388..1822390,1822556..1822558, 1822592..1822594,1822604..1822606)) /locus_tag="Alide_1765" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48118" misc_feature complement(order(1822355..1822357,1822364..1822366, 1822556..1822558,1822562..1822564,1822571..1822573)) /locus_tag="Alide_1765" /note="putative maleylacetoacetate (MAA) substrate binding site (H site); other site" /db_xref="CDD:48118" gene complement(1822908..1823921) /locus_tag="Alide_1766" /db_xref="GeneID:10103813" CDS complement(1822908..1823921) /locus_tag="Alide_1766" /inference="protein motif:PFAM:PF01557" /note="PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: tmz:Tmz1t_0853 fumarylacetoacetate (FAA) hydrolase" /codon_start=1 /transl_table=11 /product="fumarylacetoacetate (faa) hydrolase" /protein_id="YP_004126405.1" /db_xref="GI:319762468" /db_xref="GO:0003824" /db_xref="InterPro:IPR002529" /db_xref="GeneID:10103813" /translation="MKLATLQQGGRDGTLVVVSRDLAHCRAVPAIARTLLAALDDWAT VEPQLRQVYEALNSGAIKGDPFDQAACHSPLPRTWQWADGSAYINHVELVRRARNAEV PESFYTDPLMYQGGSDGFIPPYGKIVAQDAWGIDFEAEVAVVTGDVPMGATPEEAAKA IRLVMLVNDVSLRNLIPSELAKGFGFFQSKPASAFSPVAVTPDELGDAWRDAKVHLPL VVHLNGQLFGKPDAGVDMTFDFGRLIAHVAKTRTLCAGSIIGSGTVSNKQGSLWGSSI ANGGVGYCCLAEVRTYEAIEQGKPATPFMKHGDTVRIEMFDGQGRSVFGAIENQVDTR SAA" misc_feature complement(1822929..1823834) /locus_tag="Alide_1766" /note="2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179" /db_xref="CDD:30528" misc_feature complement(1822929..1823681) /locus_tag="Alide_1766" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene complement(1823997..1825370) /locus_tag="Alide_1767" /db_xref="GeneID:10103814" CDS complement(1823997..1825370) /locus_tag="Alide_1767" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: hse:Hsero_1116 4-hydroxybenzoate transporter transmembrane protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126406.1" /db_xref="GI:319762469" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10103814" /translation="MTAHSLNPSQAPQINVTELIDRNHIGVRQWMILILCGACMVMDG FDVQAIGYVAPAILQEWNIEKSAMGPVFGAGLSGLLVGSLVLSVLSDKIGRRPVLIAS TFFFAVCMLVTPLADNVEHLVVLRFVTGLGLGAIMPNTMALCGEFSPQRRRVFVMMLI SCGFTVGAMLGGMVAAALIPSFGWKSVFYAGGAIPLIIAITMMFWLPESVQFQALHGV PAGRILPVVRRLLPQEHIPANAEIARPAAKPKGAPMVRLFAEGRTTGTLTIWCISFLN MIGLYFLSQWLPTLAKGAGLTIQTAVLLGTMLQLGGTIGTILMGALIDKYGFKPVLLG CFILAFISVASIGHASNELVVLFTSVFVAGFMVIGGQPAINALAASYYPTALRTTGVG WSLGVGRIGSVLGPVVGGQLIALSWSQANLFHVVAIPSLLILGLLLFGVQVTRKPLSA AEAPAAH" misc_feature complement(1824132..1825328) /locus_tag="Alide_1767" /note="benzoate transport; Region: 2A0115; TIGR00895" /db_xref="CDD:162095" misc_feature complement(<1824750..1825274) /locus_tag="Alide_1767" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(1824867..1824869,1824885..1824890, 1824897..1824902,1824936..1824938,1824945..1824950, 1824957..1824962,1824969..1824974,1825110..1825115, 1825119..1825124,1825134..1825136,1825143..1825148, 1825155..1825157,1825206..1825211,1825215..1825223, 1825230..1825232)) /locus_tag="Alide_1767" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature complement(1824132..>1824578) /locus_tag="Alide_1767" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(1825399..1825953) /locus_tag="Alide_1768" /db_xref="GeneID:10103815" CDS complement(1825399..1825953) /locus_tag="Alide_1768" /inference="protein motif:PFAM:PF00903" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3679 glyoxalase-family protein" /codon_start=1 /transl_table=11 /product="glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004126407.1" /db_xref="GI:319762470" /db_xref="InterPro:IPR000486" /db_xref="InterPro:IPR004360" /db_xref="GeneID:10103815" /translation="MAFLNGVHHVAYRCKNAKATVEWYQKYLDANFILAIAENQVPST KEPDPYMHIFIDIGGGNILAFFELPTKPEMIAPSDANTPSWTQHLALKVDSIETMMKV KARMEADGIQVIGPTNHTIFQSIYFRDPSGHRLELAVNTATPQMDKALDDVKWDMLNE WDRTKKAPTHARWMHDGSGRIGSD" misc_feature complement(1825540..1825938) /locus_tag="Alide_1768" /note="N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins; Region: PcpA_N_like; cd08346" /db_xref="CDD:176694" misc_feature complement(order(1825921..1825923,1825927..1825929)) /locus_tag="Alide_1768" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:176694" misc_feature complement(1825420..>1825611) /locus_tag="Alide_1768" /note="This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632" /db_xref="CDD:196803" gene 1826086..1826994 /locus_tag="Alide_1769" /db_xref="GeneID:10103816" CDS 1826086..1826994 /locus_tag="Alide_1769" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3346 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126408.1" /db_xref="GI:319762471" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103816" /translation="MNVTLRQLSAFVAVAETGSFTLAAERLFITQSALSGLIKELEAS LGLRLFDRSTRRLRLSDTARELYPQIEKILHDLDGVVSEVGNLKALQRGSVRVAVPQL LACTLLPELMAGFRAQHPGVHLRLVDCAVESVMARVFSGEVDIGIGPERETNSDIAAD RLFCMPFMAVMPPGHVLARRRTLQWHDLSGQSLITLQGQFTDLLVSDVGEAARGLHKE AFMQVTFMTTALALARAGLGITLCMPYARSLVEQFGLVMRPVGDPVVERSFWIFTRRG RAPSPAAQGFRTFLEERLMDGRAGSA" misc_feature 1826095..1826982 /locus_tag="Alide_1769" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 1826098..1826277 /locus_tag="Alide_1769" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1826368..1826955 /locus_tag="Alide_1769" /note="TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440" /db_xref="CDD:176131" misc_feature order(1826410..1826415,1826419..1826424,1826431..1826433, 1826443..1826445,1826449..1826469,1826743..1826760, 1826776..1826781,1826785..1826790) /locus_tag="Alide_1769" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176131" gene 1827202..1828869 /locus_tag="Alide_1770" /db_xref="GeneID:10103817" CDS 1827202..1828869 /locus_tag="Alide_1770" /EC_number="2.3.3.13" /inference="protein motif:TFAM:TIGR00970" /note="TIGRFAM: 2-isopropylmalate synthase; KEGG: dia:Dtpsy_1949 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="YP_004126409.1" /db_xref="GI:319762472" /db_xref="GO:0003852" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR002034" /db_xref="InterPro:IPR005668" /db_xref="InterPro:IPR013709" /db_xref="GeneID:10103817" /translation="MLHNPAAKYRPAAPVRLTDRTWPDAVITKAPIWCSVDLRDGNQA LIEPMDIARKMRMFEQLVKIGFKEIEVGFPSASQIEFDFVRKLIEEDRIPDDVTIQVL TQAREPLIHRTFEALVGAPRAIVHLYNATAPVMRRVVLGMSKDEIVDLAVSHARLFKE LAAKQRATDWTFEYSPEMYSDTELEFSKRVIDAVTDVWQPTPQKKCIINLPTTVEHST PNIFADMVEWTHRHVQRRDSIVLSVHPHNDRGTGTASAELALMAGADRLEGCLFGNGE RTGNLDVVNVALNMYTQGVSPGLDFSDIDGIRSTVEYCNQLPVHPRHPYVGDLVYTSF SGSHQDAIKKAFAERREGDIWDMPYLPIDPKDLGRSYEAVIRVNSQSGKGGISYLLEG EYGLQLPRRLQIEFSQAVQREMDASGKELTAEDLWNLFQQEYRFKSVAAPAYRMQEQD GGFSLRASLQWQGEPLEIEGEGTGPIDAFVQAVSSAFDRDVRVLDYSEHAIGEGAGAK AVAYVEMRIDGQHTVYGVGMDANIVSASIRAILSGLERVPQVQAAVA" misc_feature 1827202..1828848 /locus_tag="Alide_1770" /note="2-isopropylmalate synthase; Validated; Region: PRK03739" /db_xref="CDD:179640" misc_feature 1827289..1828140 /locus_tag="Alide_1770" /note="Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain; Region: DRE_TIM_LeuA; cd07942" /db_xref="CDD:163680" misc_feature order(1827316..1827321,1827409..1827411,1827730..1827732, 1827832..1827834,1827838..1827840,1827931..1827933, 1827937..1827939) /locus_tag="Alide_1770" /note="active site" /db_xref="CDD:163680" misc_feature order(1827316..1827321,1827409..1827411) /locus_tag="Alide_1770" /note="catalytic residues [active]" /db_xref="CDD:163680" misc_feature order(1827319..1827321,1827931..1827933,1827937..1827939) /locus_tag="Alide_1770" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163680" misc_feature <1828585..1828842 /locus_tag="Alide_1770" /note="LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; pfam08502" /db_xref="CDD:149524" gene 1828905..1830446 /locus_tag="Alide_1771" /db_xref="GeneID:10103818" CDS 1828905..1830446 /locus_tag="Alide_1771" /inference="protein motif:TFAM:TIGR00973" /note="KEGG: ajs:Ajs_1774 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="YP_004126410.1" /db_xref="GI:319762473" /db_xref="GO:0003852" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR002034" /db_xref="InterPro:IPR005671" /db_xref="InterPro:IPR013709" /db_xref="GeneID:10103818" /translation="MSTDKLIIFDTTLRDGEQSPGASMTRDEKLRIARQLERLKVDVI EAGFAASSNGDFECVQAIARAIKDSTVCSLARTNDRDITRAAEALKDAGRARIHLFIA TSPLHMEKKLRMTPEQVLEQSRLSTRFARNLAEDIEFSAEDGYRSDPDFLCRVVEAAI EEGATTINIPDTVGYAIPELYGSFIKNLRERVPNSDKAVWSVHCHNDLGMAVANSLAG VKIGGARQVECTINGLGERAGNCSLEEVVMAVKTRRDYFGLEVGIDAKHLLAASRMVS QTTGFVVQPNKAVVGANAFAHASGIHQDGVLKARDTYEIMRAEDVGWSTNKIVLGKLS GRNAFKQRLQELGVELESEGEINAAFARFKELADRKSEIFDEDILALVSDESMHGDKE QFGFVSLAQHSETGERPQASIVFTMNGKEVRSSSEGNGPVDASLKAIEAHVQSGAEMV LYSVNAISGSTESQGEVTVRLQNAGRVVNGVGADPDIVVASAKAYLSALNKLQSKAER VAAQG" misc_feature 1828914..1830443 /locus_tag="Alide_1771" /note="2-isopropylmalate synthase; Validated; Region: PRK00915" /db_xref="CDD:179166" misc_feature 1828926..1829735 /locus_tag="Alide_1771" /note="2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; Region: DRE_TIM_IPMS; cd07940" /db_xref="CDD:163678" misc_feature order(1828944..1828949,1828956..1828958,1829037..1829039, 1829130..1829132,1829196..1829198,1829322..1829324, 1829328..1829330,1829412..1829414,1829418..1829420, 1829511..1829513,1829517..1829519) /locus_tag="Alide_1771" /note="active site" /db_xref="CDD:163678" misc_feature order(1828944..1828949,1829037..1829039) /locus_tag="Alide_1771" /note="catalytic residues [active]" /db_xref="CDD:163678" misc_feature order(1829511..1829513,1829517..1829519) /locus_tag="Alide_1771" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163678" misc_feature 1830078..1830410 /locus_tag="Alide_1771" /note="LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; pfam08502" /db_xref="CDD:149524" gene 1830562..1831656 /locus_tag="Alide_1772" /db_xref="GeneID:10103819" CDS 1830562..1831656 /locus_tag="Alide_1772" /inference="protein motif:PFAM:PF00768" /note="PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ajs:Ajs_1775 murein-dd-endopeptidase" /codon_start=1 /transl_table=11 /product="peptidase s11 d-alanyl-d-alanine carboxypeptidase 1" /protein_id="YP_004126411.1" /db_xref="GI:319762474" /db_xref="GO:0009002" /db_xref="InterPro:IPR001967" /db_xref="InterPro:IPR018044" /db_xref="GeneID:10103819" /translation="MHARFRIASRLSHALALLAVGVALASPGAHAAERKHAVAKKHST TVAAKRAAPRQAAVKVRHKTVSAKATRVSARSARAPVRMVAEPARLSFGQLAGLHEVS DPLDLKSSVALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLISEARLPMDEPITIT QDDVDTEKGSGSRLTVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLAVFVQRMNA KARLLGMTETRYVEPTGLSSKNQSSAHDLATLVNVAHGDPLLRELSTSPSHEVAVGQR VLQYNNTNRLVKSPSWDIGLQKTGYISEAGRCLVMQAQVAGRKLIMVFLDSAGKFSRL GDAERVRSWVEKGHPGSSASLHLGVTSPSS" sig_peptide 1830562..1830657 /locus_tag="Alide_1772" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 32" misc_feature 1830862..1831542 /locus_tag="Alide_1772" /note="D-alanyl-D-alanine carboxypeptidase; Region: Peptidase_S11; pfam00768" /db_xref="CDD:189710" misc_feature 1830865..1831602 /locus_tag="Alide_1772" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" gene complement(1831694..1832506) /locus_tag="Alide_1773" /db_xref="GeneID:10103820" CDS complement(1831694..1832506) /locus_tag="Alide_1773" /inference="protein motif:PFAM:PF01614" /note="KEGG: dia:Dtpsy_1946 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR" /codon_start=1 /transl_table=11 /product="transcriptional regulator iclr" /protein_id="YP_004126412.1" /db_xref="GI:319762475" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10103820" /translation="MKKSPADMTAKPNVQVLERMFQLIDVLAAKEESVSLKEISEKTG LHPSTAHRILNDLTIGRFVDRPESGSYRLGMRLLELGNLVKARLSVRDAAMAPMRQLH KLIQQPVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGHAPLHLTSTGKLFLAADDPQ RVRAYATRTGLPGHTRNSITQLLLLERELSKARQYGVARDNEELELGVRCMAAGVYDD QGQLVAGLSISAPADRLDEGWLPKLQATAREISLALGYTTGMRTALNGPEKS" misc_feature complement(1832204..1832467) /locus_tag="Alide_1773" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1831739..1832464) /locus_tag="Alide_1773" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(1831748..1832113) /locus_tag="Alide_1773" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene complement(1832590..1834092) /locus_tag="Alide_1774" /db_xref="GeneID:10103821" CDS complement(1832590..1834092) /locus_tag="Alide_1774" /inference="protein motif:TFAM:TIGR02121" /note="KEGG: dac:Daci_5942 sodium/proline symporter; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter" /codon_start=1 /transl_table=11 /product="sodium/proline symporter" /protein_id="YP_004126413.1" /db_xref="GI:319762476" /db_xref="GO:0005298" /db_xref="GO:0031402" /db_xref="InterPro:IPR001734" /db_xref="InterPro:IPR011851" /db_xref="InterPro:IPR018212" /db_xref="InterPro:IPR019900" /db_xref="GeneID:10103821" /translation="MQFSWNDPTAIMFAIYLVAMLGIGALGYLGTKNLSDYILGGRSL GSFVTALSAGASDMSGWLLMGLPGAIFVSGLSESWIAIGLVAGAYLNWRLVAARLRLY TERAGNALTLPDYLANRFEDKSNLLRIVTALVILVFFTLYCASGVVAGARLFENMFGM PYATALWVGAACTIAYVLIGGFLAVSWTDTIQASLMITALILAPIMAWLAVQGQLQPG QDWHAIVAPEKFDMLRGASLVGIVSLLAWGLGYFGQPHILVRFMAASSVQTIPNARRI SMTWMVLCLAGAVAVGFVGIPFFTAGQAGADAVHANGETVFMEIAKQLFNPWIAGALL AAILAAVMSTLSCQLLVCSSALTEDIYRAFLRKNASEQELVWIGRAMVLLIAVIAIAI ASNPESKVLGMVSYAWAGFGAAFGPVIILSLFWERMTRGGALAGIVVGAVTVLVWKQG GWLGLYEIVPGFILGWLAVVVTSLLGTPPSHSMRKAHAAVQQEFARIGAR" misc_feature complement(1832614..1834071) /locus_tag="Alide_1774" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" gene complement(1834295..1838290) /locus_tag="Alide_1775" /db_xref="GeneID:10103822" CDS complement(1834295..1838290) /locus_tag="Alide_1775" /inference="protein motif:TFAM:TIGR01238" /note="KEGG: dac:Daci_5941 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase" /codon_start=1 /transl_table=11 /product="delta-1-pyrroline-5-carboxylate dehydrogenase" /protein_id="YP_004126414.1" /db_xref="GI:319762477" /db_xref="GO:0003842" /db_xref="InterPro:IPR002872" /db_xref="InterPro:IPR005933" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR016160" /db_xref="GeneID:10103822" /translation="MTTTIGIKVDDLLRERIRGAAQRMNRTPHWLIKQAVVQYVDALE RGATTIRLFGADEGVPEDGAEMVQPAAQEVQPFLAFAQSILPQTELRAAITAAWHRPE TECLPALLPLARTQDEEQAAKVRELATRLVQGLRDAPVTSGVAALVQEFSLSSQEGVA LMCLAEALLRIPDKATRDALIRDKISKGDWRAHVGRSPSLFVNAAAWGLVLTGKLTST SSEKSLSAALTRVIGKGGEPLIRQGVHRAMKLMGEQFVTGQHIAEALANSRAYEKQGF RYSYDMLGEAAATDADAQRYLRDYEQAIHAIGAASAGRGIFEGPGISIKLSALHPRYS RAQYERVMQELLPRVLHLAELAKQYDIGMNIDAEEADRLELSLDLMEALCAAPSLKGW SGIGFVVQAYQKRCPYVIEYLIDLARRSRRRLMVRLVKGAYWDSEIKRAQIDGLAGYP VYTRKVYTDVSYLACARKLLEAPDAVYPQFATHNAQTLASIYQLAQSVGGSYYSGQYE FQCLHGMGEPLYAQVTGPAAEGKLARPCRIYAPVGSHETLLAYLVRRLLENGANTSFV NRIGDAGVPVADLVADPVGEVLEIARTEGRLGAPHPRIPLPAELFGGPGGQARANSRG LNLAHEQQLASLAAALLHSTRQAWLAAPPDVPLPADPAATPGWQALPNPAELADTVGW VHEATEAQVQAATGRAAQAAPIWAGTPPAARADVLARAADLLEQRSQPLMGLIMREAG KTLPNAIAEIREAVDFLRYYGAQVAAQFDNARERPLGVVLAISPWNFPLAIFTGQVAA ALAAGNAVLAKPAEQTPLTAAAMVAILHEAGVPQGALQLMPGRGETVGAALVAHPQVA GVMFTGSTEVARLIARQLARRLSPSGHPIPLIAETGGQNAMIVDSSALAEQVVADVLA SAFDSAGQRCSALRLLCLQEEVADRTLTMLRDALQEWQLGNPDRLSTDVGPVIDADAR AQIEAHIERMQAAGQKVTRVERRDGSLNGHFVAPTIIEIDSTSRLTREVFGPVLHVIR YAREQLDALVDDINATGYGLTFGVHSRIDETIAHLSGRIAAGNIYVNRNVIGAVVGVQ PFGGMDLSGTGPKAGGPLYLHRLVQGEPNAALQALPRADAGQPQPALELLARLQQAVL PGVGQDQARMACDAALAASRLGAGQLLPGPTGESNRYRLLPRGPVWALPRTPLGLVHQ VAASLASGNPCHVVLPQDDDGCAALWQALRAAAGDTGAAWLHGADAAALGDGTAAMSA LLFEGDGDALLQVGAQVAAREGAIVRVESRSSDELQAGRGYDLAALCHEQSISTNTAA AGGNAQLMTMA" misc_feature complement(1834301..1838290) /locus_tag="Alide_1775" /note="trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed; Region: putA; PRK11809" /db_xref="CDD:183321" misc_feature complement(<1838138..1838290) /locus_tag="Alide_1775" /note="Predicted transcriptional regulator [Transcription]; Region: COG3905" /db_xref="CDD:33692" misc_feature complement(1836578..1837603) /locus_tag="Alide_1775" /note="Proline dehydrogenase; Region: Pro_dh; cl03282" /db_xref="CDD:186561" misc_feature complement(1834955..1836292) /locus_tag="Alide_1775" /note="NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961" /db_xref="CDD:196287" misc_feature complement(order(1835021..1835023,1835141..1835143, 1835225..1835227,1835231..1835233,1835519..1835521, 1835615..1835623,1835681..1835686,1835693..1835695, 1835702..1835713,1835855..1835860,1835864..1835866, 1835909..1835911,1835933..1835947)) /locus_tag="Alide_1775" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143395" misc_feature complement(order(1835519..1835521,1835528..1835530, 1835621..1835623,1835933..1835935)) /locus_tag="Alide_1775" /note="catalytic residues [active]" /db_xref="CDD:143395" misc_feature complement(<1834652..>1834810) /locus_tag="Alide_1775" /note="NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961" /db_xref="CDD:196287" gene complement(1838436..1839677) /locus_tag="Alide_1776" /db_xref="GeneID:10103823" CDS complement(1838436..1839677) /locus_tag="Alide_1776" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_1945 acyl-CoA dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004126415.1" /db_xref="GI:319762478" /db_xref="GO:0003995" /db_xref="InterPro:IPR000169" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10103823" /translation="MDFDYSPKTKELQARLRQFMDDHIHPAEKACAEELAAHTAAGNR WQPLQTIENLKPKARAAGLWNLFLPVDTAEASGYHGAGLTNAEYAPLAEIMGRVLWAS EVFNCSAPDTGNMETIARYGSEAIKAEWLTPLLEGRIRSAFAMTEPDVASSDATNICT RIERQGHHYVINGRKWWISGANDPRCKVFITMGKTDPDAPRHSQQSMIVVPADTPGIT IVRPLNVFGYDDAPHGHAEVVFDDVRVPVDNILLGEGRGFEIAQGRLGPGRIHHCMRL IGQAERALELMCQRTLSRTAFGKTIAQQGVTQERIAEARCRIDMARLLTLKAAWMMDT AGNKVAKTEIAMIKVVAPGMACQVIDWAMQAHGGGGVSDDFPLAYAYANARTLRFADG PDEVHRSAIAKWELGKHATRP" misc_feature complement(1838442..1839677) /locus_tag="Alide_1776" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(1838457..1839659) /locus_tag="Alide_1776" /note="Acyl-CoA dehydrogenases similar to fadE2; Region: ACAD_FadE2; cd01155" /db_xref="CDD:173844" misc_feature complement(order(1839105..1839107,1839111..1839113, 1839210..1839215,1839234..1839236,1839240..1839242)) /locus_tag="Alide_1776" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:173844" misc_feature complement(order(1838505..1838510,1838871..1838873, 1838880..1838885,1838904..1838906,1839141..1839143)) /locus_tag="Alide_1776" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173844" misc_feature complement(1838505..1838507) /locus_tag="Alide_1776" /note="catalytic base [active]" /db_xref="CDD:173844" gene complement(1839693..1840784) /locus_tag="Alide_1777" /db_xref="GeneID:10103824" CDS complement(1839693..1840784) /locus_tag="Alide_1777" /inference="protein motif:PFAM:PF01636" /note="PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_1778 aminoglycoside phosphotransferase" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_004126416.1" /db_xref="GI:319762479" /db_xref="InterPro:IPR002575" /db_xref="InterPro:IPR008266" /db_xref="GeneID:10103824" /translation="MSNFDHFIGTRPVSGQHAFDTGALGAWLSRHLEDFAGPLTVEMF KGGQSNPTYKLITPALSYVMRAKPGPVAKLLPSAHAIEREYAVMSGLAGTGVPVPRMF ALCEDESVIGRAFYVMEFMQGRVLWDQSLPGLQPAERAAIYDEMNRVIAALHTVDFAA RGLAGYGKPGNYFERQIGRWSKQYLASVTQPIPEMDRLMEWLPAHMPASARDDSRVSI VHGDYRLDNLMFHPTEPRVIAVLDWELSTLGHPLADFAYHCMSWHIPASLSRGIGGLD LAALGIPAESDYIRRYCERTGIADVDALRADWNFYLAYNMFRIAAILQGIAKRVEAGT AASAQAKAAGATARPMAQLAWSFAQRSHS" misc_feature complement(1839798..1840751) /locus_tag="Alide_1777" /note="Predicted aminoglycoside phosphotransferase [General function prediction only]; Region: COG3173" /db_xref="CDD:32986" misc_feature complement(1839990..1840670) /locus_tag="Alide_1777" /note="Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: ACAD10_11_like; cd05154" /db_xref="CDD:88617" misc_feature complement(order(1840002..1840004,1840059..1840064, 1840098..1840100,1840104..1840109,1840119..1840121, 1840422..1840433,1840488..1840490,1840590..1840592, 1840596..1840598,1840629..1840631,1840641..1840643)) /locus_tag="Alide_1777" /note="putative active site [active]" /db_xref="CDD:88617" misc_feature complement(order(1840002..1840004,1840119..1840121, 1840641..1840643)) /locus_tag="Alide_1777" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:88617" misc_feature complement(order(1840059..1840064,1840098..1840100, 1840104..1840109,1840119..1840121,1840422..1840433, 1840488..1840490,1840590..1840592,1840596..1840598, 1840629..1840631)) /locus_tag="Alide_1777" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88617" gene complement(1840841..1841560) /locus_tag="Alide_1778" /db_xref="GeneID:10103825" CDS complement(1840841..1841560) /locus_tag="Alide_1778" /inference="protein motif:PFAM:PF00027" /note="KEGG: ajs:Ajs_1779 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_004126417.1" /db_xref="GI:319762480" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:10103825" /translation="MDEPILTIEEREAINSGRWFSSLSPSLRHDILRCSYVKRYKDGT LIAARGDPPEDWIACARGAVRVSSISLSGKQITLTYVEPGIWFGDVAIFDGDQRTHDA YAHGDTTILCVTRTDFRKILAQHTELYEAMLRLHARRIRQLFGLVEDLNTLPLRSRLA KQLLHLVRSYGVPSLSDGSEIRIGLQLAQEELAQLLGASRQRVNQELKAMEREDTIRI EPGGLVVRDREALMRIAEASP" misc_feature complement(1840874..1841509) /locus_tag="Alide_1778" /note="cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:31008" misc_feature complement(1841162..1841506) /locus_tag="Alide_1778" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature complement(order(1841261..1841269,1841294..1841299)) /locus_tag="Alide_1778" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature complement(order(1841177..1841185,1841195..1841203)) /locus_tag="Alide_1778" /note="flexible hinge region; other site" /db_xref="CDD:28920" gene complement(1841750..1842529) /locus_tag="Alide_1779" /db_xref="GeneID:10103826" CDS complement(1841750..1842529) /locus_tag="Alide_1779" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_1942 enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004126418.1" /db_xref="GI:319762481" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="InterPro:IPR018376" /db_xref="GeneID:10103826" /translation="MTAELQSTSHGQTLVLTLRAPQARNALDGAICAAGIEALSVAER SDEVRCVVITGADGVFSAETSLERLQARRQQPAQAQAQGVELLHHWVEAVRTHPKPVI AAVEGMAEGAGFSLALACDLVVAARNAAFAMGGARLGLSPAGGASWNLPRSLPHQMAS EILLCGEHIAAPRLHALGLVNHLAEPGRALHEALALAQRLNARAPNALASIKELVGDA PQRSFTEQLAHERDHLVRSLQHANAGEGIAAALEKRTPNYK" misc_feature complement(1841753..1842529) /locus_tag="Alide_1779" /note="enoyl-CoA hydratase; Provisional; Region: PRK07511" /db_xref="CDD:181009" misc_feature complement(1841954..1842517) /locus_tag="Alide_1779" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(1842116..1842118,1842125..1842130, 1842194..1842202,1842206..1842208,1842332..1842346, 1842356..1842358,1842452..1842454,1842458..1842460)) /locus_tag="Alide_1779" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(1842194..1842196,1842338..1842340)) /locus_tag="Alide_1779" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(1841987..1841989,1841996..1841998, 1842029..1842031,1842038..1842043,1842047..1842052, 1842056..1842061,1842074..1842079,1842083..1842091, 1842095..1842097,1842113..1842124,1842158..1842169, 1842230..1842232,1842254..1842256)) /locus_tag="Alide_1779" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(1842540..1844060) /locus_tag="Alide_1780" /db_xref="GeneID:10103827" CDS complement(1842540..1844060) /locus_tag="Alide_1780" /inference="protein motif:PFAM:PF02737" /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_1941 3-hydroxy-acyl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase nad-binding protein" /protein_id="YP_004126419.1" /db_xref="GI:319762482" /db_xref="GO:0016491" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="GeneID:10103827" /translation="MNAAFTSIGIVGTGAMGRGIAQIAAQAGSTVYLFDTKPGAVDAA RTHLHGQWQRLADKGRIDATQVPVLLERLVRAASLHDLAACELVVEAIAERLDAKREL LLELEYIVAPGAVLASNTSSLSITALAAPLTHPQRVAGFHFFNPVPLMKVVEVVAGLR TEAVVCARLAQYARAMGHTPVMAQDTPGFIVNHAGRGFGTEALRIVSEGVADFATVDR ILRDQAGFKLGPFELMDLTALDVTHPAMESIYHQYYEEPRFRPSPITAQRLAAGLLGR KTGEGFYRYVDGAAQVPAEPPAPRPASLPPVWVSPRAARRAELYQLLKSLGATIETGA TPSAGALILVAPLGFDVTTVAVVERLDPTRTVGIDMLIDDAATRRRVLATNPATREDM RDAAHALFASDGKAVSVIRDSGGFVTQRVVATIVNIAADICQQRICSPQDLETAVTLG LGYPLGPLAMGDRWGPTNILEVLFNMQTVYGDARYRPSPWLRRRGAIGLSLTHEEP" misc_feature complement(1842543..1844060) /locus_tag="Alide_1780" /note="3-hydroxy-acyl-CoA dehydrogenase; Validated; Region: PRK08268" /db_xref="CDD:181339" misc_feature complement(1843503..1844042) /locus_tag="Alide_1780" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1843206..1843499) /locus_tag="Alide_1780" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" misc_feature complement(1842567..1842818) /locus_tag="Alide_1780" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" gene 1844138..1846156 /locus_tag="Alide_1781" /db_xref="GeneID:10103828" CDS 1844138..1846156 /locus_tag="Alide_1781" /inference="similar to AA sequence:KEGG:Dtpsy_1940" /note="KEGG: dia:Dtpsy_1940 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126420.1" /db_xref="GI:319762483" /db_xref="GeneID:10103828" /translation="MRNVLVGACLCVAASGVAALSLGASRGAVVLGSAIDLGFEVRPD PGKDLASSCISAHLVSGTTSIADSRVRVTPVDGGVIPMVRVQATMVADEPVLTVTIAA GCEGRVTRTYTFLADLPAAGAANTQGPLDIGRLGTADPGTFAARPANAVAAAAGPRTP AAAGAAAVQSLVRREKPQAGASAGQAADKPARPRARATVPAPVPTAAARLIVEPLDLW LDAPLELRLSREEPLLLSTPDEARRAEFAALWKVLNSSPADLRQSMERLGRLEADAAA HRRQADAGRAEARGLRQQLEQLQSQSFSAGVVYALGGALVLALAAIAWLLRRTRREAL QAWHNSVALSEGLKDGAVVSEGPDGKVRWQVEPEAADTWHPSSVPPEELQEAGPGPSD APDTIPPAPAQTAAPEPAARLAAPRQQAIQPEGLFDIQQQAEFFISIGEHEQAIQVLR SHIAEQGDAMPAMYLELLRLFQMLGRTDSFEQLRRQFQERFNVQVPRYTQWHESGHAL EDYPEALAQIEALWSSPEVLGVLDGFLFRRGDGRDAQRFDLAAFDDLLLLLAIAQTTP AHLRGAPPPRARTTPLGPAAAVPRSLDSIVGDLSLMPSGYDVLAKQPPVEDMLDVDLS EPAQFTLRDHQPEAGAAAPAHGQSVGFAMDDDKLELRFELERMENRRY" sig_peptide 1844138..1844209 /locus_tag="Alide_1781" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.761) with cleavage site probability 0.242 at residue 24" gene complement(1846167..1847069) /locus_tag="Alide_1782" /db_xref="GeneID:10103829" CDS complement(1846167..1847069) /locus_tag="Alide_1782" /EC_number="2.5.1.3" /inference="protein motif:PRIAM:2.5.1.3" /note="KEGG: dia:Dtpsy_1939 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase" /codon_start=1 /transl_table=11 /product="thiamine-phosphate diphosphorylase" /protein_id="YP_004126421.1" /db_xref="GI:319762484" /db_xref="InterPro:IPR003733" /db_xref="InterPro:IPR020053" /db_xref="GeneID:10103829" /translation="MHESHEAMVQAIVHHHGAAYADFPAQPVPATATDEPVYRAALAA CSALGFIAHDAGCLARAWAAQTRRLGSFDAARWPDDPADFGLQPRPHARPFAPCPQQL GLYAVLPDAAWVGRMARAGVPTVQLRYKSQDGAAIAREVQAAVQAVRGTPALLFINDH WRAAIDAGAYGVHLGQEDLDALGPDDLRAIREAGLRLGVSTHGYAEMVRADAASPSYI AMGAVFPTTLKKMATVPQGVARLVAYARLMRGYPQVAIGGIGLEQFPQVLATGVGSIA VVRALVNADEPEASAARLMRAMQA" misc_feature complement(1846182..1846760) /locus_tag="Alide_1782" /note="Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-...; Region: TMP_TenI; cd00564" /db_xref="CDD:73367" misc_feature complement(order(1846233..1846244,1846296..1846298, 1846308..1846310,1846386..1846388,1846392..1846394, 1846413..1846415,1846419..1846421,1846470..1846472, 1846551..1846553,1846686..1846688,1846692..1846694, 1846749..1846751,1846755..1846757)) /locus_tag="Alide_1782" /note="thiamine phosphate binding site [chemical binding]; other site" /db_xref="CDD:73367" misc_feature complement(order(1846233..1846238,1846296..1846298, 1846383..1846388,1846392..1846394,1846470..1846472, 1846536..1846538,1846593..1846598,1846680..1846682, 1846686..1846688,1846692..1846694)) /locus_tag="Alide_1782" /note="active site" /db_xref="CDD:73367" misc_feature complement(order(1846383..1846385,1846470..1846472, 1846536..1846538,1846545..1846547,1846593..1846598, 1846680..1846682,1846686..1846688)) /locus_tag="Alide_1782" /note="pyrophosphate binding site [ion binding]; other site" /db_xref="CDD:73367" gene complement(1847070..1847873) /locus_tag="Alide_1783" /db_xref="GeneID:10103830" CDS complement(1847070..1847873) /locus_tag="Alide_1783" /inference="protein motif:PFAM:PF05690" /note="PFAM: thiazole biosynthesis family protein; KEGG: dia:Dtpsy_1938 thiazole synthase" /codon_start=1 /transl_table=11 /product="thiazole biosynthesis family protein" /protein_id="YP_004126422.1" /db_xref="GI:319762485" /db_xref="InterPro:IPR008867" /db_xref="GeneID:10103830" /translation="MNTPNDDALVLYGQRFESRLLLGTARYPSPAALQAAVQRARPAM LTAALRRQGSIEQGKSFWAMLKELQVPVLPNTAGCHSVQEAITTSHMAREVFDTPWIK LEVIGDDYTLQPDTLNLVQAAEQLVRDGFYVLPYCTEDLVLCQRLVDVGCQAIMPWAA PIGTGRGPVNPYAMQTLRQRLDVPMLVDAGLGLPSHACQVMEWGFDGVLLNTAVAQAA DPVRMASAFADAVAAGRAAHLAGAMQPRESAQPSTPVLGTPFWHHAQEA" misc_feature complement(1847109..1847849) /locus_tag="Alide_1783" /note="Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728" /db_xref="CDD:73390" misc_feature complement(order(1847685..1847687,1847694..1847696, 1847730..1847732)) /locus_tag="Alide_1783" /note="ThiS interaction site; other site" /db_xref="CDD:73390" misc_feature complement(order(1847310..1847312,1847562..1847564, 1847568..1847570)) /locus_tag="Alide_1783" /note="putative active site [active]" /db_xref="CDD:73390" misc_feature complement(order(1847112..1847114,1847118..1847126, 1847130..1847132,1847136..1847141,1847145..1847159, 1847163..1847168,1847175..1847177,1847196..1847198, 1847205..1847210,1847217..1847225,1847238..1847240, 1847265..1847270,1847277..1847279,1847289..1847297, 1847337..1847339,1847349..1847351,1847367..1847369, 1847376..1847384,1847436..1847441,1847448..1847456, 1847460..1847462,1847529..1847537,1847544..1847546, 1847553..1847555)) /locus_tag="Alide_1783" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:73390" gene complement(1847889..1848086) /locus_tag="Alide_1784" /db_xref="GeneID:10103831" CDS complement(1847889..1848086) /locus_tag="Alide_1784" /inference="protein motif:TFAM:TIGR01683" /note="KEGG: dia:Dtpsy_1937 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis protein this" /protein_id="YP_004126423.1" /db_xref="GI:319762486" /db_xref="InterPro:IPR003749" /db_xref="InterPro:IPR010035" /db_xref="GeneID:10103831" /translation="MNILINQNPVELPDGASVADAVASLDPTPPFAVAVNLQFVPRAA YATHLLQAGDSVEIIAPVTGG" misc_feature complement(1847892..1848083) /locus_tag="Alide_1784" /note="ThiaminS ubiquitin-like sulfur carrier protein; Region: ThiS; cd00565" /db_xref="CDD:176353" misc_feature complement(order(1847910..1847918,1847970..1847972)) /locus_tag="Alide_1784" /note="thiS-thiF/thiG interaction site; other site" /db_xref="CDD:176353" gene complement(1848083..1849201) /locus_tag="Alide_1785" /db_xref="GeneID:10103832" CDS complement(1848083..1849201) /locus_tag="Alide_1785" /inference="protein motif:TFAM:TIGR02352" /note="KEGG: dia:Dtpsy_1936 FAD dependent oxidoreductase; TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="glycine oxidase thio" /protein_id="YP_004126424.1" /db_xref="GI:319762487" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR012727" /db_xref="GeneID:10103832" /translation="MLAHPSLRSPSFITILGAGLMGRLLAVALARQGHKVEVHEAGSR DGATSAAHVAAAMVAPLAESIVAEPGVVRMGQHSLARWPGLLAQLVQPVYFQHNGTLI VWHRQDAPEAARLRQKFEQTQGAVPQLPHMQPLDAAALAEREPALAGRFSQGLYLPGE GQLDNRQLLDALAATMDALGVATHWHSARAPQDFAPGAAGQPDWLLDCRGLGAREQWQ GLRGVRGEVVRLHAPDVTLQRPTRLVHPRYSIYLAPKEDHRFVIGATEIESEDLSPAS VRSTLELLSAAYAVHPGFAEARITELTTQCRPTLPDNLPAIRMPRERVLQVNGLYRHG FMIAPAMLDVVMQLLGEGQSALAPDFELALQGGAATAA" misc_feature complement(<1849064..1849165) /locus_tag="Alide_1785" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(1848143..1849117) /locus_tag="Alide_1785" /note="glycine oxidase ThiO; Region: thiamin_ThiO; TIGR02352" /db_xref="CDD:162817" misc_binding complement(1849241..1849343) /note="TPP riboswitch (THI element) as predicted by Rfam (RF00059), score 53.36" /bound_moiety="thiamin/thiaminpyrophosphate" gene 1849396..1850244 /locus_tag="Alide_1786" /db_xref="GeneID:10103833" CDS 1849396..1850244 /locus_tag="Alide_1786" /inference="protein motif:TFAM:TIGR00097" /note="KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1" /codon_start=1 /transl_table=11 /product="phosphomethylpyrimidine kinase" /protein_id="YP_004126425.1" /db_xref="GI:319762488" /db_xref="GO:0008972" /db_xref="InterPro:IPR004399" /db_xref="InterPro:IPR013749" /db_xref="GeneID:10103833" /translation="MTQETPTSTRRYARVLSIAGSDSGGGAGIQADLKTFCALGCYGM TAITAITAQNTQGVRAIHGVPTDILRAQIDAVVEDIGVDAVKIGMLHAPEVVQVVAEA IRRHRLPSVVLDPVMVATSGDRLIAEETVGTLVRELFPLAAVVTPNLDEAGWLLGRPI TGEDELDAAAGDLLALGARAALLKGGHLPGERVVDLLALPGGERHRLASARIATHNGH GTGCTLSSAIAAHLALGLPLVRAVEEARAYILGAIAAGADVRTGHGHGPLNHGYAPQP QRILEG" misc_feature 1849492..1850163 /locus_tag="Alide_1786" /note="4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of...; Region: HMPP_kinase; cd01169" /db_xref="CDD:29353" misc_feature order(1849492..1849497,1849504..1849506,1849513..1849530, 1849534..1849536,1849543..1849557,1849570..1849575, 1849579..1849581,1849585..1849590,1849597..1849599, 1849606..1849608,1849618..1849623) /locus_tag="Alide_1786" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29353" misc_feature order(1849552..1849554,1849660..1849662,1850059..1850061) /locus_tag="Alide_1786" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29353" misc_feature order(1849735..1849737,1849846..1849848,1849945..1849947, 1850050..1850052,1850056..1850058) /locus_tag="Alide_1786" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29353" gene complement(1850255..1850731) /locus_tag="Alide_1787" /db_xref="GeneID:10103834" CDS complement(1850255..1850731) /locus_tag="Alide_1787" /inference="protein motif:PFAM:PF08239" /note="KEGG: dia:Dtpsy_1934 SH3 type 3 domain protein; PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein" /codon_start=1 /transl_table=11 /product="sh3 type 3 domain protein" /protein_id="YP_004126426.1" /db_xref="GI:319762489" /db_xref="InterPro:IPR003646" /db_xref="InterPro:IPR010466" /db_xref="InterPro:IPR013247" /db_xref="GeneID:10103834" /translation="MSFAPSRLARTLSTATAALALAAPLLAPATAGAREFVSIKSNAV NVRAQPTTRSDTRWELGRGYPLQVEQRRGQWLKVRDFEESLGWVFAPLTSKTPHRVVT APSARLRAGPGTQHKIVGTLQQHEVVRSLGQSGAWAKVQRDGGQKGWVAKRLTWGW" sig_peptide complement(1850630..1850731) /locus_tag="Alide_1787" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.812 at residue 34" misc_feature complement(1850450..1850614) /locus_tag="Alide_1787" /note="Bacterial SH3 domain; Region: SH3_3; cl02551" /db_xref="CDD:141512" misc_feature complement(1850273..1850413) /locus_tag="Alide_1787" /note="Bacterial SH3 domain; Region: SH3_3; cl02551" /db_xref="CDD:141512" gene complement(1850818..1852089) /locus_tag="Alide_1788" /db_xref="GeneID:10103835" CDS complement(1850818..1852089) /locus_tag="Alide_1788" /inference="protein motif:PFAM:PF02133" /note="PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: ctt:CtCNB1_2972 cytosine/purines/uracil permease" /codon_start=1 /transl_table=11 /product="permease for cytosine/purines uracil thiamine allantoin" /protein_id="YP_004126427.1" /db_xref="GI:319762490" /db_xref="GO:0015205" /db_xref="InterPro:IPR001248" /db_xref="GeneID:10103835" /translation="MNTLATPRNEALAPLPAGQRVFRWHDHASLWFSLGVGLLVMQVG AYLMPALGTQQALLAVVVGSIIGAGLLGWVAKIGCDSGLASAGLMHAVYGRRFAGLPI VLNIVQLVGWGTFELVVMRDATVAIGRQSGMLAAGAWPVAATLLWGGVVLLLISGSMV QLVRRVIARVALPLVVLSLLWLSWQFIAMAQAQGLAQIWQRRGNGGMGVMPALDLVIA MPISWLPLVADYARHGVSGAGALRGSWIGYALANIWCYCLGVLVALVLPSQDLVTALL LAQGGLLALSLILIDEVDNAYGDMYSGAVSAHSLRPRWSVRRWGLGLAALCTALALVL PMHSLEPFLLLLSSVFVPLFGVILGRLAFGVPAHAALQRAAGVHGLPVALWLAGIACY HLLPRALPALGAALPTLALCFALAYLTRPRG" misc_feature complement(<1851139..1852005) /locus_tag="Alide_1788" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" gene complement(1852086..1853132) /locus_tag="Alide_1789" /db_xref="GeneID:10103836" CDS complement(1852086..1853132) /locus_tag="Alide_1789" /inference="protein motif:PFAM:PF07992" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dia:Dtpsy_1933 FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="fad-dependent pyridine nucleotide-disulfide oxidoreductase" /protein_id="YP_004126428.1" /db_xref="GI:319762491" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10103836" /translation="MQAPSAPAPAQADAVVIGAGPVGLFQVFQLGLQGIAAHLVDALP HVGGQCAELYPDKPIYDIPGVPVCSGRELVALLQRQMAPFAPACHLGQQVETLAAQDD GRFLLQTTAGTRLLAKSVFIAAGVGAFVPRTIKVDGIAALAGGQVLYHPTDTGVANAR HVVVHGGDEAAVQAAIACAPLAASVTLLHRRDVFQAEPALLAELQTLREGGRIRVAIG QITGVQAAPDGRLQALVLQLPDGSQQHLPLDLLLAYLGISPRLGPVAGWGLAMERKQI AVDTATFATSVPGIYAVGDVNGYPGKRKLILCGFHEATLAAFAEAERQAGHRLPLEYT TSSERLHARLGVGA" misc_feature complement(1852164..1853090) /locus_tag="Alide_1789" /note="Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; Region: TrxB; COG0492" /db_xref="CDD:30838" gene complement(1853147..1853470) /locus_tag="Alide_1790" /db_xref="GeneID:10103837" CDS complement(1853147..1853470) /locus_tag="Alide_1790" /inference="similar to AA sequence:KEGG:Dtpsy_1932" /note="KEGG: dia:Dtpsy_1932 4Fe-4S ferredoxin iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_004126429.1" /db_xref="GI:319762492" /db_xref="InterPro:IPR000813" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="GeneID:10103837" /translation="MTHVVVENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCA VCVPECPANAIFAEEDLPSDQLAFIKINAELTPKFKSITKRKAALPDADEWNGTPGKL KDLER" misc_feature complement(1853276..1853461) /locus_tag="Alide_1790" /note="Ferredoxin [Energy production and conversion]; Region: COG1146" /db_xref="CDD:31341" misc_feature complement(1853150..1853296) /locus_tag="Alide_1790" /note="Domain of unknown function (DUF3470); Region: DUF3470; pfam11953" /db_xref="CDD:152388" gene complement(1853598..1854965) /locus_tag="Alide_1791" /db_xref="GeneID:10103838" CDS complement(1853598..1854965) /locus_tag="Alide_1791" /EC_number="2.7.7.4" /inference="protein motif:TFAM:TIGR02034" /note="TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: dia:Dtpsy_1931 sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase, large subunit" /protein_id="YP_004126430.1" /db_xref="GI:319762493" /db_xref="GO:0008972" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR011779" /db_xref="GeneID:10103838" /translation="MTTNLIADTATAAGAAARNDHVSALKFITCGSVDDGKSTLIGRL LVDSRAVLQDHLAGVQRGGEVDLALLTDGLSAEREQGITIDVAYRYFATEARKFIIGD APGHEQYTRNMVTAASQADAAVVLVDATKLDWQNPRLALLPQTRRHSLLVHLLRVHSL VFAVNKLDAVADPALAFAHIRAALQQFAQDAGITVAATVPVSALKGWNVVDARPGWCG YEGSSLLQILELLPHTPADAHLPLAFPVQWVEKFSSSSDTRQGRRVFWGRVAAGGARV GAQVQVFPSGQRAAIAQVLDHARRPGGIQAGGSAGIVLDREVDVSRGDWIVAAPTPAA QAAEDDFDTPAEQPSWPGRRELGATVAWMDDEPLVAGRVYWALHGHRWVKAKLRRVVH RLDIHTLAEQDATQLEPNAIGHVELLLQESVPAAPFEKARVLGSMILVDTASHKTAGA VLVRT" misc_feature complement(1853604..1854908) /locus_tag="Alide_1791" /note="GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]; Region: CysN; COG2895" /db_xref="CDD:32720" misc_feature complement(1854270..1854890) /locus_tag="Alide_1791" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature complement(1854852..1854875) /locus_tag="Alide_1791" /note="G1 box; other site" /db_xref="CDD:133258" misc_feature complement(order(1854354..1854362,1854462..1854464, 1854468..1854473,1854651..1854653,1854849..1854869)) /locus_tag="Alide_1791" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133258" misc_feature complement(1854717..1854719) /locus_tag="Alide_1791" /note="G2 box; other site" /db_xref="CDD:133258" misc_feature complement(1854699..1854707) /locus_tag="Alide_1791" /note="Switch I region; other site" /db_xref="CDD:133258" misc_feature complement(1854651..1854662) /locus_tag="Alide_1791" /note="G3 box; other site" /db_xref="CDD:133258" misc_feature complement(order(1854600..1854605,1854651..1854656)) /locus_tag="Alide_1791" /note="Switch II region; other site" /db_xref="CDD:133258" misc_feature complement(1854462..1854473) /locus_tag="Alide_1791" /note="G4 box; other site" /db_xref="CDD:133258" misc_feature complement(1854354..1854362) /locus_tag="Alide_1791" /note="G5 box; other site" /db_xref="CDD:133258" misc_feature complement(1853985..1854242) /locus_tag="Alide_1791" /note="Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding...; Region: Translation_Factor_II_like; cl02787" /db_xref="CDD:194443" misc_feature complement(1853607..1853906) /locus_tag="Alide_1791" /note="TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of...; Region: CysN_NoDQ_III; cd04095" /db_xref="CDD:58077" gene complement(1854965..1855921) /locus_tag="Alide_1792" /db_xref="GeneID:10103839" CDS complement(1854965..1855921) /locus_tag="Alide_1792" /EC_number="2.7.7.4" /inference="protein motif:PRIAM:2.7.7.4" /note="KEGG: aav:Aave_3055 sulfate adenylyltransferase subunit 2; PFAM: phosphoadenosine phosphosulfate reductase" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase" /protein_id="YP_004126431.1" /db_xref="GI:319762494" /db_xref="InterPro:IPR002500" /db_xref="InterPro:IPR011784" /db_xref="GeneID:10103839" /translation="MNARVDTSVLTHLSNQHLDALEEETIFILREVAAAFERPALLFS GGKDSLVMLRCAEKAFMDSKGPSGSRGRIPYPLLMIDTGHNFPEVTDFRDQRARELGA ELIVRSVEDSMARGTVRLAHPGESRNVHQSVTLLEAIEEFRFDALIGGARRDEEKARA KERIFSHRDGFGQWQPKAQRPELWTLFNTRIAPGEHFRVFPISNWTELDVWQYIDREA IALPSLYYAHQRQVVERRGLLVPVTPLTPPKDGERVETRTVRFRTVGDITCTCPVESP AASAAEIVIETLAAEVSERGATRMDDKTSDASMEKRKKDGYF" misc_feature complement(1854968..1855870) /locus_tag="Alide_1792" /note="sulfate adenylyltransferase, small subunit; Region: CysD; TIGR02039" /db_xref="CDD:131094" misc_feature complement(1855223..1855810) /locus_tag="Alide_1792" /note="This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713" /db_xref="CDD:30168" misc_feature complement(order(1855328..1855330,1855340..1855342, 1855385..1855387)) /locus_tag="Alide_1792" /note="Active Sites [active]" /db_xref="CDD:30168" gene complement(1855987..1856610) /locus_tag="Alide_1793" /db_xref="GeneID:10103840" CDS complement(1855987..1856610) /locus_tag="Alide_1793" /EC_number="1.8.4.8" /inference="protein motif:PRIAM:1.8.4.8" /note="KEGG: ajs:Ajs_1793 phosphoadenylylsulfate reductase (thioredoxin); PFAM: phosphoadenosine phosphosulfate reductase" /codon_start=1 /transl_table=11 /product="phosphoadenylyl-sulfate reductase (thioredoxin)" /protein_id="YP_004126432.1" /db_xref="GI:319762495" /db_xref="InterPro:IPR002500" /db_xref="GeneID:10103840" /translation="MSTLDLARINAELGRDAPGLVKWALGLNQAPIVTTNFRPFEAVI LHLVTRVQPDVPVIWMDNGYNTEATYRYADEVTRLLGLNLRIYLPLRSRAHREAVDGP VPALHEPRHAAFTEEVKLEPFARALRETAPKVWFTALRATDSAVRAQMDPVSINPDGL IKVAPLLHWTSRDLHQYCEAHDLPNNFDYVDPTKGEEQRECGLHLAH" misc_feature complement(1856044..1856520) /locus_tag="Alide_1793" /note="This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713" /db_xref="CDD:30168" misc_feature complement(order(1856125..1856127,1856170..1856172, 1856254..1856256)) /locus_tag="Alide_1793" /note="Active Sites [active]" /db_xref="CDD:30168" gene complement(1856607..1857002) /locus_tag="Alide_1794" /db_xref="GeneID:10103841" CDS complement(1856607..1857002) /locus_tag="Alide_1794" /inference="protein motif:PFAM:PF06073" /note="PFAM: Uncharacterised conserved protein UCP030820; KEGG: dia:Dtpsy_1928 hypothetical protein" /codon_start=1 /transl_table=11 /product="uncharacterized conserved protein ucp030820" /protein_id="YP_004126433.1" /db_xref="GI:319762496" /db_xref="InterPro:IPR008318" /db_xref="GeneID:10103841" /translation="MKIIAADAVPESAGAEKTLQIPNDAELAELVASGALEGVQRVEL QFPKFTDGRAYSQALLLRRRYRFAGDIRATGDVLIDQLVHMHRSGFTSAVLAPGVNAD AAQRQFDRYSAFYQGDVLEPRPLFAREAA" misc_feature complement(1856619..1856948) /locus_tag="Alide_1794" /note="Bacterial protein of unknown function (DUF934); Region: DUF934; cl01526" /db_xref="CDD:194157" gene complement(1857032..1858819) /locus_tag="Alide_1795" /db_xref="GeneID:10103842" CDS complement(1857032..1858819) /locus_tag="Alide_1795" /inference="protein motif:PFAM:PF01077" /note="PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dia:Dtpsy_1927 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein" /codon_start=1 /transl_table=11 /product="nitrite and sulphite reductase 4fe-4S region protein" /protein_id="YP_004126434.1" /db_xref="GI:319762497" /db_xref="GO:0016491" /db_xref="GO:0020037" /db_xref="GO:0051536" /db_xref="InterPro:IPR005117" /db_xref="InterPro:IPR006067" /db_xref="GeneID:10103842" /translation="MYQYTDFDRQFVKLRAQQFRDQLERWQRGELTDEQLLPLRLQNG WYIQRYAPMARIAVPYGEISSLQLRTLGRIAREYDKPDPELLARAQATQDQLEASQPG QTLPAPPLKYGYGHFTTRTNCQFNWIPITKAADVMDLLASVCMHGIQTSGNDIRNITC DAWEGIAEDGIVDCRPFAEITRQWSSLHPEFSYLPRKFKIAFNGAAEDRAAIGWYDIG LQALRNDAGEVGFTVKVGGGMGRTPIVGSVVREFLPWDQLLNYIEAIVRVYNGYGRRD NKWKARIKILVKSEGQAFIDAVEKEYRAIVDLDGAPHTITQAELDRVTSHFVVPELKS AGLPAKVDPQGQLYQRWLRQNVRGHRLPGMKTVTLSFKRPGFAPGDADADTLDALAQL AEQFSASEARLTHEQNLMLPWVFESDLPALYEAARKLGLAQPNIGLLTDMISCPGGDF CSLANARSLHIAAVVTERYQDLDELFDIGPIDLHMSGCINSCGHHHSGHIGILGVDKD GKEWYQITLGGADGSQLSGPAIGGKVVGPSFTAAEVPNVIEALLDTFRSLRQSGELFI DTLRRVGHDPFKQAANAARHPKVEEAQAL" misc_feature complement(1857080..1858819) /locus_tag="Alide_1795" /note="Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]; Region: CysI; COG0155" /db_xref="CDD:30504" misc_feature complement(1858391..1858663) /locus_tag="Alide_1795" /note="Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460" /db_xref="CDD:190643" misc_feature complement(1857533..>1857640) /locus_tag="Alide_1795" /note="Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460" /db_xref="CDD:190643" gene complement(1858846..1859649) /locus_tag="Alide_1796" /db_xref="GeneID:10103843" CDS complement(1858846..1859649) /locus_tag="Alide_1796" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: aav:Aave_3052 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126435.1" /db_xref="GI:319762498" /db_xref="InterPro:IPR002781" /db_xref="GeneID:10103843" /translation="MPDFAFILAGFAVGLIVGLTGVGGGSLMTPVLIFVFGVKPNLAV GTDLLFAAFTKLGGTLGLARQRLVPWRVVAQLCAGSIPAALLALWALRHLGPDSAAAQ RLMTTTLGAALLLTAAATFYKVLVFSPERAAAEAARRRAQSADATRPRHWSLPVLLGA VIGMLVTFTSVGAGAIGVSVLLLVFPHLPLPRIIAADIAYAVPLTLVAGLGHASLGSV NWPLLGLLLAGSLPGIWLGSRLVARTPERLIRSVLSVLLAWAGAKLVLI" misc_feature complement(1858858..1859568) /locus_tag="Alide_1796" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene complement(1859759..1861642) /locus_tag="Alide_1797" /db_xref="GeneID:10103844" CDS complement(1859759..1861642) /locus_tag="Alide_1797" /inference="protein motif:TFAM:TIGR03197" /note="KEGG: dac:Daci_4644 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752" /codon_start=1 /transl_table=11 /product="tRNA u-34 5-methylaminomethyl-2-thiouridine biosynthesis protein mnmc" /protein_id="YP_004126436.1" /db_xref="GI:319762499" /db_xref="GO:0008168" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR008471" /db_xref="InterPro:IPR017610" /db_xref="GeneID:10103844" /translation="MTPRTMPESLSWLPDGTPFSTRFGDRYHGEQGLAQARDVFLHGC GLPQAWAGAQQWRILETGFGFGLNFLATWAAWRADPGRPRLLHFVSLEAWPVPADALL RAAERHPELLPLARELHAQYWGLLPGVHRLWFEGGRVLLTLCVGDAQALLRQQLWEVD SVYLDGFNPQCNPDIWSLETLKAMARHCRRGTRLATWTVARSVRDALAQCGFAVDKVP GLPPKRDNLQARFDPHWQPRTSRQAPEFARPARCLVLGAGLAGATAAASLARRGWQVT VLDAGDTPAAGASGLPAGLFAPHLSPDDNLFARLSRAGVRAMLQQSQALLQEGIDWSP AGVLERRPAGQPGLPAGWHDGPGADWSHTADAGRLADAGLPPDASACWHARAGWVRPP RFIARLLEQPGIAWRPRSAVARLARGAGTWQALDGAGNPLAEAELLLLAAGPACNALL APLQAPPLPLQPVRGLMSWGPQPAQAQGLPPFAVNGGGALAAHVPCDGGPAWHMGATF ERDVDRLPMTAEEQAAAHASNWRRLRALVPAAVPALRAAFEDGQGLRAWAGVRCTAHD RMPIVGPVAPAALPGLWVSTAMGARGLTRAVLCAELLAARLMGEPLPVEARLAQAMGC ERL" misc_feature complement(1860941..1861642) /locus_tag="Alide_1797" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" misc_feature complement(1859780..1860826) /locus_tag="Alide_1797" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" gene complement(1861639..1862304) /locus_tag="Alide_1798" /db_xref="GeneID:10103845" CDS complement(1861639..1862304) /locus_tag="Alide_1798" /inference="protein motif:PFAM:PF03458" /note="PFAM: Uncharacterised protein family UPF0126; KEGG: dia:Dtpsy_1925 protein of unknown function UPF0126" /codon_start=1 /transl_table=11 /product="uncharacterized protein family upf0126" /protein_id="YP_004126437.1" /db_xref="GI:319762500" /db_xref="InterPro:IPR005115" /db_xref="GeneID:10103845" /translation="MLPSVSLLESFQASQMSFMLAIYLLAIMAEAMSGALAAGRRNMD IFGVTVIAFVTALGGGTIRDMVLGHYPLGWTQHPEYVYLVIAAGLLTTVVARYMIRLK RVFLLLDALGLVAFSLIGCSVALELGYPGVVVVMAGMITGISGGILRDVLCNQVPVVF RRELYASVSLAVCLLFLALRAWDVDHDIGTAVCFAGGLALRLAAMRFHWRLPVFSYQQ RWE" misc_feature complement(1861648..1862265) /locus_tag="Alide_1798" /note="Predicted membrane protein [Function unknown]; Region: COG2860" /db_xref="CDD:32687" misc_feature complement(1862014..1862250) /locus_tag="Alide_1798" /note="UPF0126 domain; Region: UPF0126; pfam03458" /db_xref="CDD:146214" misc_feature complement(1861753..1861992) /locus_tag="Alide_1798" /note="UPF0126 domain; Region: UPF0126; pfam03458" /db_xref="CDD:146214" gene complement(1862376..1862648) /locus_tag="Alide_1799" /db_xref="GeneID:10103846" CDS complement(1862376..1862648) /locus_tag="Alide_1799" /inference="protein motif:PFAM:PF04362" /note="PFAM: Fe(II) trafficking protein YggX; KEGG: ctt:CtCNB1_3078 Fe(II) trafficking protein YggX" /codon_start=1 /transl_table=11 /product="fe(ii) trafficking protein yggx" /protein_id="YP_004126438.1" /db_xref="GI:319762501" /db_xref="GO:0005506" /db_xref="InterPro:IPR007457" /db_xref="GeneID:10103846" /translation="MARTVHCIKLGKEAEGLDFPPYPGELGKRIYENVSKQAWADWLK HQTMLVNENRLNLADARARQYLARQMENHFFGGGADAAAGYVPPSA" misc_feature complement(1862379..1862648) /locus_tag="Alide_1799" /note="Bacterial Fe(2+) trafficking; Region: Iron_traffic; cl01104" /db_xref="CDD:186337" gene 1862773..1863792 /locus_tag="Alide_1800" /db_xref="GeneID:10103847" CDS 1862773..1863792 /locus_tag="Alide_1800" /inference="protein motif:TFAM:TIGR00971" /note="KEGG: ajs:Ajs_1799 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1" /codon_start=1 /transl_table=11 /product="sulfate abc transporter, periplasmic sulfate-binding protein" /protein_id="YP_004126439.1" /db_xref="GI:319762502" /db_xref="GO:0015419" /db_xref="InterPro:IPR000957" /db_xref="InterPro:IPR005669" /db_xref="InterPro:IPR006059" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10103847" /translation="MKNRRHFIKFPLAAVLAGAMSLTVLPSLAQPAQFLNVSYDPTRE LYAEYNQAFARHWKARTGQDVQLRQSHGGSGKQARSIIDGIDADVATLALGGDVDALA RHGLLAADWQKRLPHNSAPYTSTIVFLVKKGNPKGLKDWDDLARPGVQVITPNPKTSG GARWNYLAAWEFAKRKYGGDAQARDFVGRLYKNVPVLDTGARGSTITFVQRGVGDVLL AWENEAFLALQEFGKDKFEIVVPSLSILAEPTVAVVDKVVDKKGSRALAEEYLKYLYS DEGQEIAGKNYYRPTSEKARARFDAQFPKLTLVTIDQAFGGWARADKEHFADGASFDQ IYTKK" sig_peptide 1862773..1862862 /locus_tag="Alide_1800" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 30" misc_feature 1862809..1863786 /locus_tag="Alide_1800" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1863858..1864178 /locus_tag="Alide_1801" /db_xref="GeneID:10103848" CDS 1863858..1864178 /locus_tag="Alide_1801" /inference="similar to AA sequence:KEGG:Rfer_1780" /note="KEGG: rfr:Rfer_1780 NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126440.1" /db_xref="GI:319762503" /db_xref="GeneID:10103848" /translation="MSVLLIAGSSSPRSRSAALLDAVGLRLARRAAPPEHLHIRDLNP QVLLLADTGHRSVAQAVQRVQALVRHLVITCETDQHRVVGEGRARGEALLPRWVAAIA IGVA" gene complement(1864175..1864870) /locus_tag="Alide_1802" /db_xref="GeneID:10103849" CDS complement(1864175..1864870) /locus_tag="Alide_1802" /inference="similar to AA sequence:KEGG:Rmet_3794" /note="KEGG: rme:Rmet_3794 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="tetr family transcriptional regulator" /protein_id="YP_004126441.1" /db_xref="GI:319762504" /db_xref="GeneID:10103849" /translation="MKKKLTDEEFFDALTHLLLAEGIKGLTVGEIATRMHCSRRRLYD IAQTKEEIFCAVVKRFFDGILGQGEALIQREQDLTAALAAYLDVGVQAASRIGVQFLK DVEDSAAARSIFDRYQQARTVRLSQLIDEGVRQGVFAPCHGLVVSELILGAALRLRRP AFLAQANLTIEEAFQEFYRVLLGGLLIDAAAPKVARSGARTSRAAARRASVKKNVGDD EVGTMLMAAWNRD" misc_feature complement(<1864481..1864870) /locus_tag="Alide_1802" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" gene 1864935..1865072 /locus_tag="Alide_1803" /db_xref="GeneID:10103850" CDS 1864935..1865072 /locus_tag="Alide_1803" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126442.1" /db_xref="GI:319762505" /db_xref="GeneID:10103850" /translation="MVPIYMKWYLLGSIHNALPGVEDSISPPLLKTRELSAIAVLPTQ A" gene 1865089..1866654 /locus_tag="Alide_1804" /db_xref="GeneID:10103851" CDS 1865089..1866654 /locus_tag="Alide_1804" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: azl:AZL_a10790 long-chain fatty-acid-CoA ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004126443.1" /db_xref="GI:319762506" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10103851" /translation="MNLLDFFDAGVASHPDAPCFEDCGRDAPAITYAQAGALTCQIAR GLRALGLAPGFHGAVLSGNAGAAFTALLGVLRAGGVWLPVNARNGVEANIEFLQDMDC DVLFYQARYAGQVAEIRGKLPRIRHCIALDDAQGPDLSVARLVQGHSPEMFAASLQPQ GLAMIMGTGGTTGRSKGVMLSHRNLTATMANHLSAMAVTDRMTVLAAAPITHTAGLVS MPFMARGGRVVLMDGIDPQNLLQVIAQERVNMLFLPPTVIYTLLAQPNVRDFDFSTLR YLMYGAAPMSPDKLAEAIDVFGPVMLQIYGQAEVPGAISVLRVEDHFVDGRVAPRQRL LSAGRRFPFTRVAIMDDDGNLLTQPGAVGEIVAQGDIVTAGYYKNPEATAEVQRHGWH CTGDVGYFDEQGFLFIVDRKKDMIVTGGFNVFSSEVEAAVMAHPAVKDCAVIGVPDDK WGEAVRAVIELRPGQSVEPQALIQFVKDRLGSVKAPKEVEIVAQLPRSAVGKVLKKEV RKKYWHAQERMVS" misc_feature 1865113..1866651 /locus_tag="Alide_1804" /note="acyl-CoA synthetase; Validated; Region: PRK06188" /db_xref="CDD:180454" misc_feature 1865179..1866624 /locus_tag="Alide_1804" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 1866710..1867897 /locus_tag="Alide_1805" /db_xref="GeneID:10103852" CDS 1866710..1867897 /locus_tag="Alide_1805" /EC_number="2.3.1.176" /inference="protein motif:PRIAM:2.3.1.176" /note="KEGG: bxe:Bxe_B2740 lipid-transfer protein; PFAM: Thiolase-like" /codon_start=1 /transl_table=11 /product="propanoyl-CoA c-acyltransferase" /protein_id="YP_004126444.1" /db_xref="GI:319762507" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020613" /db_xref="InterPro:IPR020615" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10103852" /translation="MQEPVLVAGVGMTPFKKPGDNLPYPEMAAQAIREALQDAGLAYS DVQDVYAGYVYGDSASGQRAVYEVGMTGVPVINVNNNCSSGSTALYLARKAVANGSAD CALAVGFEQMPAGALRAYWEDRPDPLDRFNGVMDEVFGHPELPMAIRYFGAAGREHMD RYGTPLDTFARIRAKASRHAARNPLALFRKEVTVEEVLASSPLVPGAMTRLMACPPTC GAAAAVFVSKKFAQKMGLAANVQVLAQSLVSDRPGVFADKSAISVVGFDMTREAARQV YEAAGVGPQDIDVCELHDCFAQNELLSYEGLGFCAVGEGQAFVESDSNTYGGAVVVNP SGGLLSKGHPLGATGLAQCYELTHQLRGSAEARQVEGARLALQHNAGLGGATVVTLYG RAD" misc_feature 1866722..1867891 /locus_tag="Alide_1805" /note="lipid-transfer protein; Provisional; Region: PRK08256" /db_xref="CDD:181327" misc_feature 1866731..1867882 /locus_tag="Alide_1805" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature order(1866953..1866955,1867586..1867588,1867736..1867738) /locus_tag="Alide_1805" /note="active site" /db_xref="CDD:29416" gene 1867909..1868718 /locus_tag="Alide_1806" /db_xref="GeneID:10103853" CDS 1867909..1868718 /locus_tag="Alide_1806" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004126445.1" /db_xref="GI:319762508" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10103853" /translation="MVKRLEGKVALVTGCGSSGPGWGNGKAMAVLFAREGAKVYGCDV HLDAARETEAIVRQEGGAMSVAPCDVTDAGAVETLVQDCIATYGDIDILVNNVGTARL GGVVEQSLEDWRLVFDINLTSMFLTCKHAIPSMLRKGRGSIVNIGSVAGVRDSGVAYV SYSASKAAVLGFSRSVALEYAKRGIRSNVLMPGLMNTPMVRQPVLSLADGYREASLEE TMAKRDRQCPMGHMGDAWDVAYTALWLASDESKYVTSAEIMVDGGISARIG" misc_feature 1867915..1868697 /locus_tag="Alide_1806" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1867984..1868691 /locus_tag="Alide_1806" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature order(1868035..1868043,1868110..1868118,1868194..1868202, 1868263..1868265,1868344..1868352,1868392..1868394, 1868404..1868406,1868482..1868493,1868497..1868502) /locus_tag="Alide_1806" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature order(1868266..1868268,1868350..1868352,1868392..1868394, 1868404..1868406) /locus_tag="Alide_1806" /note="active site" /db_xref="CDD:187544" gene 1868756..1869952 /locus_tag="Alide_1807" /db_xref="GeneID:10103854" CDS 1868756..1869952 /locus_tag="Alide_1807" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_C0498 branched chain amino acid ABC transporter periplasmic ligand-binding protein" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004126446.1" /db_xref="GI:319762509" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10103854" /translation="MGSVAKWFGKSMVVAAATAMGLVSTGYAQAKPEKFKIGGVLSLS GPYGLLGEDMRRGVQVAVEERGGKVMGVPIEITWEDDETKPQPAVQKATKLISEGSHM IFGALSSASTLAVMNLTKQRKVPHLVTISADDKITVPGGSRYTFRTSNTLGMENRMAL AYMQDRKLKKIYAVTADYQATRDGYEWIKQQTGPNGIQIVGEDFPPLGNRDYSSIVDK IAKSDADGVLLMLTGSDVVTLLKQAGQVNLGKNKVLFGPVAADETMAAAVGPASLGVN TGLRYDHTIDTAANRKFVEAYRKKFGIFPSMTAGEAYDGMAWWLDTVEKTGSWDKEKW VDAFAASVRENSVEGKKTMRACDHQALQPGFWGEVVQGTPPAPALTMKITKVFAEEKL FEACKN" sig_peptide 1868756..1868848 /locus_tag="Alide_1807" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.962 at residue 31" misc_feature 1868828..1869862 /locus_tag="Alide_1807" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1868861..1869844 /locus_tag="Alide_1807" /note="Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011" /db_xref="CDD:195943" gene 1870021..1870878 /locus_tag="Alide_1808" /db_xref="GeneID:10103855" CDS 1870021..1870878 /locus_tag="Alide_1808" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0499 branched chain amino acid ABC transporter inner membrane protein" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004126447.1" /db_xref="GI:319762510" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10103855" /translation="MSTIVIGLSLGMLLFLLAAGLTLIFGMLGVINFAHGAIYMLGAY VSYETGRRTGSFLMGVLAATFFTALAGAVIEKLTLRPLYERPHFYQLILTFGLILILS DVVRFVWGPGYQEVAIPPLWNGTVDMLGSTIPMYRLFVIGFGALVSAGLYLVLEKSTF GMLVRAASSDAEMVRILGLPVGAIRMAVFATGCGLSGLAGAIAAPLFPIELGMATNTI IDCFIVVILGGLGNIRGAIAASMLIGMVRALGYVYLPGWVDIMTFVLLIGTLLTRPQG LFYRAARTA" sig_peptide 1870021..1870131 /locus_tag="Alide_1808" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.644 at residue 37" misc_feature 1870099..1870854 /locus_tag="Alide_1808" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 1870534..1870590 /locus_tag="Alide_1808" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 1870875..1871843 /locus_tag="Alide_1809" /db_xref="GeneID:10103856" CDS 1870875..1871843 /locus_tag="Alide_1809" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0500 branched chain amino acid ABC transporter inner membrane protein" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004126448.1" /db_xref="GI:319762511" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10103856" /translation="MKLSLFDICFGLLLAAAGILLPFLHPGEALIQLVTLAAIWAIFA IGFDFVFGALGMVSFGHATFLGVGGYAVALATQKYGLPFSAGVGLAVIVGAAFALLFS FFALRVSGIFFALVTLALSQLIFILADSKLRGFTGGSDGISGVERPGFLGIDFYDPVH YYWFVLGVYALVMLAVISLRSSPFGRVIAAIRGNETRADQLGFNVNRYKQITFVISGG LSGLAGALLASLLMYMNPQMLHWTTSGDVIIMTLVGGSGSLWGATVGVIAFEVLKEWL SSWTEYWYGVLGLVFILATIFFPRGIVGELEKGFAAYQKNRRGGAR" misc_feature 1870983..1871786 /locus_tag="Alide_1809" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 1871460..1871516 /locus_tag="Alide_1809" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 1871840..1872592 /locus_tag="Alide_1810" /db_xref="GeneID:10103857" CDS 1871840..1872592 /locus_tag="Alide_1810" /inference="protein motif:PFAM:PF00005" /note="KEGG: bxe:Bxe_C0501 branched chain amino acid ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126449.1" /db_xref="GI:319762512" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10103857" /translation="MSQAALRCEGVTVSYGALKAVNDVSHEFQEGRIYGLIGPNGAGK TTLLNVLAGRQMRHAGKVYCGGREISQRPAYARARMGIGRSFQIIKIFGEMTVAENLL VAAQSRRPGFQPFWMSRHFDRQFREQLDSILELTGLAVHRDDIAGTLPYGLQRSLELG VTLLPDPRILLLDEPLAGIGHHEIQAALALIRKAAQGRTVLLIEHNMDAVMSLSHEIV VMSNGSVIACGAPEDIRRNEAVRSIYLGEDAQ" misc_feature 1871843..1872580 /locus_tag="Alide_1810" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 1871855..1872559 /locus_tag="Alide_1810" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 1871951..1871974 /locus_tag="Alide_1810" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(1871960..1871965,1871969..1871977,1872098..1872100, 1872356..1872361,1872452..1872454) /locus_tag="Alide_1810" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 1872089..1872100 /locus_tag="Alide_1810" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 1872284..1872313 /locus_tag="Alide_1810" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 1872344..1872361 /locus_tag="Alide_1810" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 1872368..1872379 /locus_tag="Alide_1810" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 1872440..1872460 /locus_tag="Alide_1810" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 1872589..1873296 /locus_tag="Alide_1811" /db_xref="GeneID:10103858" CDS 1872589..1873296 /locus_tag="Alide_1811" /inference="protein motif:PFAM:PF00005" /note="KEGG: bxe:Bxe_C0502 branched chain amino acid ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126450.1" /db_xref="GI:319762513" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10103858" /translation="MIELEKASVRYGQALALEEISVRIDFHEIVAIVGRNGAGKTTLL KALVGLMPLVAGRRLLGEQDISGLGVEAIAKLGVALVPDTRRIFPNLSVLENLKIGAL AHQPGHWTLDRVLDAFPRLRERLNFGGDQLSGGEQQMLSIGRALLGNPRILLLDEPTE GLAPVIVDQLVRVFSEVHRQGTGIVLVEQNLKVPMKLAHRQYVLDHGQVAWSGTAQEL DAQRAHVEGLITTGAAA" misc_feature 1872589..1873248 /locus_tag="Alide_1811" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 1872592..1873248 /locus_tag="Alide_1811" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 1872688..1872711 /locus_tag="Alide_1811" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(1872697..1872702,1872706..1872714,1872835..1872837, 1873054..1873059,1873153..1873155) /locus_tag="Alide_1811" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 1872826..1872837 /locus_tag="Alide_1811" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 1872982..1873011 /locus_tag="Alide_1811" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 1873042..1873059 /locus_tag="Alide_1811" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 1873066..1873077 /locus_tag="Alide_1811" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 1873141..1873161 /locus_tag="Alide_1811" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 1873340..1873933 /locus_tag="Alide_1812" /db_xref="GeneID:10103859" CDS 1873340..1873933 /locus_tag="Alide_1812" /inference="protein motif:PFAM:PF02627" /note="PFAM: Carboxymuconolactone decarboxylase; KEGG: pat:Patl_3926 carboxymuconolactone decarboxylase" /codon_start=1 /transl_table=11 /product="carboxymuconolactone decarboxylase" /protein_id="YP_004126451.1" /db_xref="GI:319762514" /db_xref="InterPro:IPR003779" /db_xref="GeneID:10103859" /translation="MNAHAAARIAPLHENDPRSHDPVLEELVDFVGYRPNALLTMARK PGVVPALLQLLGVTLRGDGLLTQALRFLIAAETARGARCRYTTTHLVHAAHHVGVDWD KLAALPSYRDDPRYTQQERKALAIATAGGSLPVREPGQAITQARQVFTEEEIVEIVSC VAMVGWFNRWNGLMGSELELVPSEALAHAPWLQELEV" misc_feature 1873370..1873876 /locus_tag="Alide_1812" /note="Uncharacterized conserved protein [Function unknown]; Region: COG2128" /db_xref="CDD:32311" gene 1873970..1875571 /locus_tag="Alide_1813" /db_xref="GeneID:10103860" CDS 1873970..1875571 /locus_tag="Alide_1813" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1300 DitJ-like CoA ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004126452.1" /db_xref="GI:319762515" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10103860" /translation="MHSRIHEPHACTLTDALREWAVGRPGAPWLEDSQGNALTIGQAF EASQRFAGFLHQLGVQPEERVGVFMFNSCAMVATTFGIGYLRATAVMLNTELRSSFLR HQLNDCQLATIVVDAALVEHIAGLADELPHLRTLVVVGDAPVAVPGRWRQVAWTDSGA SAPWEGPAPRPEDIFCIMYTSGTTGPSKGVLMPHCHCALIGLGAMRSLEITEADKYYI CLPLFHANGLFMQLGATVLAGIPAFLKQKFSASTWLADIRRSGATLTNHLGTTAMFVI NQPPTEQDRDHRLRASLSAPNPAQHEAVFRERFGVKDVLSGFGMTEVGIPIWGRIGHA APNAAGWAHEDRFEICIADPETDVPVPAGQAGEILVRPKVPFGFMAGYLNVPAKTVEA WRNLWFHTGDAGMRDAQGLITFVDRIKDCIRRRGENISATEVEAVVGQLPGIHEVAAY AVPAQGAGGEDEVMLALVPSDGAVLDMADIALQAGALLPRFAKPRYLRQMDSLPKTAT GKIQRAILRQQGSAGAYDAETAHAR" misc_feature 1874003..1875568 /locus_tag="Alide_1813" /note="crotonobetaine/carnitine-CoA ligase; Provisional; Region: PRK06155" /db_xref="CDD:180431" misc_feature 1874108..1875526 /locus_tag="Alide_1813" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 1875587..1876420 /locus_tag="Alide_1814" /db_xref="GeneID:10103861" CDS 1875587..1876420 /locus_tag="Alide_1814" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1711 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004126453.1" /db_xref="GI:319762516" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10103861" /translation="MSEKLRGKVAVVTGSGRGIGRAMALKLASEGARLVLNDLDDAPA AAVREEIIALGGEAVACCGNVAAADFADRLIAAATGAFGGLDILINNAGYTWDNVIQK TTDEQWHAMLDVHLTAPFRILRAAQPVIRELSRTDAAAGRRTVRKVVNISSVAGVFGN AGQANYSAAKAGIMGLTMTLAKEWGRLNTTVNCVAYGLIRTRMTEVTGSADAAIQVEG REIKVGVNPGLMAMLERSIPLGRAGTPEEAAGAAYLFCIPESDYVSGQTVLCTGGLTG I" misc_feature 1875596..1876408 /locus_tag="Alide_1814" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1875608..1876411 /locus_tag="Alide_1814" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(1875626..1875628,1875632..1875637,1875641..1875643, 1875698..1875706,1875857..1875865,1876037..1876045, 1876082..1876084,1876094..1876096,1876172..1876183) /locus_tag="Alide_1814" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1875929..1875931,1876043..1876045,1876082..1876084, 1876094..1876096) /locus_tag="Alide_1814" /note="active site" /db_xref="CDD:187535" gene 1876466..1876635 /locus_tag="Alide_1815" /pseudo /db_xref="GeneID:10103862" gene 1876852..1877952 /locus_tag="Alide_1816" /pseudo /db_xref="GeneID:10103863" gene 1877949..1879087 /locus_tag="Alide_1817" /pseudo /db_xref="GeneID:10103864" gene 1879156..1880035 /locus_tag="Alide_1818" /pseudo /db_xref="GeneID:10103865" gene complement(1880081..1881058) /locus_tag="Alide_1819" /db_xref="GeneID:10103866" CDS complement(1880081..1881058) /locus_tag="Alide_1819" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase catalytic; Sel1 domain protein repeat-containing protein; KEGG: rfr:Rfer_0483 lytic transglycosylase, catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic" /protein_id="YP_004126454.1" /db_xref="GI:319762517" /db_xref="InterPro:IPR000189" /db_xref="InterPro:IPR006597" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10103866" /translation="MPRRSGSPCSAGVTVAAKTRILESMRPSLPNLVPLSVALFCTVA GGAARAQPSEGDSALAASLREQAIAYEHGEGVARDARRAANLYCTSARLGDMLAQYHL GWMYANGRGVARDDATAAFFFQAAAEQGLDVAARMLQVVGGATGEVPECMRPPQPAPV EAAPPGVDYQAIAPPKIMELVHKMAPQYQVEPQLALAIIAAESNFNPQAVSPKNAQGL MQLIPETSERFQVRNPYDPAQNIRGGLAYLRWLLAYFEGEVALVAAAYNAGEGKVERY RGVPPYVETRAYVQRILKAVGARAHPFDRTVTQPSPVLERIRLTLRAGN" misc_feature complement(<1880633..>1880920) /locus_tag="Alide_1819" /note="FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790" /db_xref="CDD:31133" misc_feature complement(1880177..1880485) /locus_tag="Alide_1819" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature complement(order(1880261..1880263,1880318..1880320, 1880393..1880395,1880453..1880455)) /locus_tag="Alide_1819" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature complement(1880453..1880455) /locus_tag="Alide_1819" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 1881411..1882130 /locus_tag="Alide_1820" /db_xref="GeneID:10103867" CDS 1881411..1882130 /locus_tag="Alide_1820" /inference="similar to AA sequence:KEGG:c1165" /note="KEGG: ecc:c1165 P4 family integrase" /codon_start=1 /transl_table=11 /product="p4 family integrase" /protein_id="YP_004126455.1" /db_xref="GI:319762518" /db_xref="GeneID:10103867" /translation="MATITDTKARNIKPTDPAIPHGGITGLALHPSSTKGHGKWVLRY VSPVSGKRRNAGLGSYPEISIAEVGKRATTMRIELAEGKDPLEEKAKIDDKPKVPTFK EAAQTLHGDLRPGWKNPKHGQQWINTLQEYVFPKLGNKPLHEIQPGDVAEVLKPIWLT KAETASRVKQRIHAVFGWGWAHGYCQSNPVDVVGHLLSQQPGKAVRTQHHPAMPWRDI PEFVQKHLRSGNRPEVNRPGF" misc_feature 1881507..>1882079 /locus_tag="Alide_1820" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" gene 1882161..1882484 /locus_tag="Alide_1821" /db_xref="GeneID:10103868" CDS 1882161..1882484 /locus_tag="Alide_1821" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126456.1" /db_xref="GI:319762519" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103868" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature 1882161..1882418 /locus_tag="Alide_1821" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1882481..1883395 /locus_tag="Alide_1822" /db_xref="GeneID:10103869" CDS 1882481..1883395 /locus_tag="Alide_1822" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126457.1" /db_xref="GI:319762520" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10103869" /translation="MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSAR AQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIVVARCTVERLMRAMGLQGARRG RAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAASDTSTKVST" misc_feature 1882541..1883377 /locus_tag="Alide_1822" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature 1882856..1883212 /locus_tag="Alide_1822" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 1883501..1883893 /locus_tag="Alide_1823" /db_xref="GeneID:10103870" CDS 1883501..1883893 /locus_tag="Alide_1823" /inference="similar to AA sequence:KEGG:Ajs_2230" /note="KEGG: ajs:Ajs_2230 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126458.1" /db_xref="GI:319762521" /db_xref="GeneID:10103870" /translation="MNLSLPEDVLDQMALEQAHFDAAPQAFFEAWKRGAQIAGHEWFG DGTREGLQRATTKWDLRPNMLMLNDALGVLSSGQRMFLSAMVSFYNSREGGAMLKRCG FEGLSDFGGLDLERRQVIADLTLHYNGW" gene 1884144..1884860 /locus_tag="Alide_1824" /db_xref="GeneID:10103871" CDS 1884144..1884860 /locus_tag="Alide_1824" /inference="similar to AA sequence:KEGG:Ajs_2229" /note="KEGG: ajs:Ajs_2229 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126459.1" /db_xref="GI:319762522" /db_xref="GeneID:10103871" /translation="MSHSKNPFVRGYDGLSVQRLLAISYDDDCPLSYLPLHVSQSHLP DSQVERHACVFSDDFALITEGQNVPPELDAQCPSHGIARNLFYAVMAEEAGKPLHVGD TYSEEAAREVVRRLRFETGFYSRAWEISSAHITEEAGRYLANLADIATPSGFLFVAFR IPYSAAVGVKLIATPWTDANLQHVEGITAEELRQEHRAKGVPESLVEVLHLAALADVR LLIFDADAPVLDGLTLYDDE" gene 1885152..1885949 /locus_tag="Alide_1825" /db_xref="GeneID:10103872" CDS 1885152..1885949 /locus_tag="Alide_1825" /inference="similar to AA sequence:KEGG:Rpic12D_0659" /note="KEGG: rpf:Rpic12D_0659 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126460.1" /db_xref="GI:319762523" /db_xref="GeneID:10103872" /translation="MDTQAIRAQMPTLVVGHVPSNVRSFKFNIFDGQPKVSTLGFHID PQPFEGKVIATTDEAIVVKTGRAEFAVLDKALVTDVPDEGAKVQVEPYARRRFDGLRA DTPEESTEFTADGQPYTVKRLILGSAPAKLPIAEPQCPELQELIHQLEQLPAPDGFRR VTHLLVDADARDFTVVDPSPSNIIATPPAIGFTVASAKFQGQVTVLYERGLDLYAVEL RRDGELVERVDEVFFDTLGETLERLIDDGSWRFIRVQRLSGRKVVRH" gene complement(1886172..1887860) /locus_tag="Alide_1826" /db_xref="GeneID:10103873" CDS complement(1886172..1887860) /locus_tag="Alide_1826" /inference="protein motif:TFAM:TIGR02053" /note="KEGG: ajs:Ajs_1298 mercuric reductase; TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region" /codon_start=1 /transl_table=11 /product="mercuric reductase" /protein_id="YP_004126461.1" /db_xref="GI:319762524" /db_xref="GO:0016152" /db_xref="GO:0045340" /db_xref="GO:0050660" /db_xref="GO:0050661" /db_xref="InterPro:IPR000815" /db_xref="InterPro:IPR004099" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR011796" /db_xref="InterPro:IPR012999" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR017969" /db_xref="InterPro:IPR021179" /db_xref="GeneID:10103873" /translation="MAEAIAFHIDGMTCVSCAEHVRQALENVSGVRTASVSYPHRRAE IEADAGVSLDPLVAAVTALGYRARFSDTPNKPAGLLDKALGRLGGETRRGGGEPALHV AVIGSGGAAMAAALKAVELGTRVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRG SPFDSGLPPTPPSILRERLLAQQQGRVEELRHAKYEGILESTPAINVLRGEARFKDAR TLAVATADGGKREVSFDRCLIATGASPAIPPIPGLADTSYWTSTEALVSDSIPERLAV IGSSVVAVELAQAFARLGSHITILARNALFFREDPAIGEAVTAAFSAEGIEVLDHTQA SQVAYADGEFVLTTGHGELRADKLLVATGRAPNTRSLNLAAAGVEVNAQGAIVIDRAM RTSASHIFAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPTVVFTDPQVAT VGYSEAEAHHDGIETDSRLLTLDNVPRALANFDTRGFIKLVAEAVSERLIGVQAVAPE AGELIQTAALAIRHRMTVQELADQLFPYLTMVEGLKLAAQTFNKDVKQLSCCAG" misc_feature complement(1886175..1887851) /locus_tag="Alide_1826" /note="putative mercuric reductase; Provisional; Region: PRK13748" /db_xref="CDD:184298" misc_feature complement(1887657..1887842) /locus_tag="Alide_1826" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature complement(order(1887810..1887812,1887819..1887827)) /locus_tag="Alide_1826" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature complement(1886805..1887044) /locus_tag="Alide_1826" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(1886220..1886549) /locus_tag="Alide_1826" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene complement(1887871..1888149) /locus_tag="Alide_1827" /db_xref="GeneID:10103874" CDS complement(1887871..1888149) /locus_tag="Alide_1827" /inference="protein motif:TFAM:TIGR02052" /note="KEGG: ajs:Ajs_1299 mercuric transport protein periplasmic component; TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein" /codon_start=1 /transl_table=11 /product="mercuric transport protein periplasmic component" /protein_id="YP_004126462.1" /db_xref="GI:319762525" /db_xref="GO:0015097" /db_xref="GO:0045340" /db_xref="InterPro:IPR001802" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR011795" /db_xref="InterPro:IPR017969" /db_xref="GeneID:10103874" /translation="MKKLATLIALAATLSTPAWAATKIVTLSVPGMTCEACPITVKKA LSKVAGVQKAAVSFEKREAVVTFDDAKTNAEALSKATANAGYPATVKQ" sig_peptide complement(1888087..1888149) /locus_tag="Alide_1827" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 21" misc_feature complement(1887883..1888074) /locus_tag="Alide_1827" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature complement(order(1888039..1888041,1888048..1888056)) /locus_tag="Alide_1827" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" gene complement(1888160..1888510) /locus_tag="Alide_1828" /db_xref="GeneID:10103875" CDS complement(1888160..1888510) /locus_tag="Alide_1828" /inference="protein motif:PFAM:PF02411" /note="PFAM: Mercuric transport protein MerT; KEGG: ajs:Ajs_1300 mercuric transport protein" /codon_start=1 /transl_table=11 /product="mercuric transport protein mert" /protein_id="YP_004126463.1" /db_xref="GI:319762526" /db_xref="GO:0015097" /db_xref="InterPro:IPR003457" /db_xref="GeneID:10103875" /translation="MSEPKNGRGALATGGVAAILASACCLGPLFLVALGFSGAWIGNL TVLEPYRPIFIGAALIALFFAWRSIFRPARACKPGDVCAVPQVRTTYKIMFWIVSALV LVVLAFPYVLPLFY" misc_feature complement(1888163..1888510) /locus_tag="Alide_1828" /note="MerT mercuric transport protein; Region: MerT; cl03578" /db_xref="CDD:186578" sig_peptide complement(1888409..1888510) /locus_tag="Alide_1828" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.876) with cleavage site probability 0.521 at residue 34" gene 1888582..1888989 /locus_tag="Alide_1829" /db_xref="GeneID:10103876" CDS 1888582..1888989 /locus_tag="Alide_1829" /inference="protein motif:TFAM:TIGR02051" /note="TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: ajs:Ajs_1301 MerR family transcriptional regulator; SMART: regulatory protein MerR" /codon_start=1 /transl_table=11 /product="hg(ii)-responsive transcriptional regulator" /protein_id="YP_004126464.1" /db_xref="GI:319762527" /db_xref="GO:0003677" /db_xref="GO:0045340" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR011794" /db_xref="InterPro:IPR015358" /db_xref="GeneID:10103876" /translation="MENASENLTIGAFAKAAGVNVETIRFYQLKGLLPQPKRPYGSIR RYGQADVARVKFVKSAQRLGFSLDEVGQLLKLEDGTHCSEAAELAVHRLADVRARMAD LTRMEDALSKLVSECDAHHGNVSCPLIAALHCC" misc_feature 1888582..1888980 /locus_tag="Alide_1829" /note="putative transcriptional regulator MerR; Provisional; Region: PRK13752" /db_xref="CDD:184302" misc_feature 1888603..1888980 /locus_tag="Alide_1829" /note="Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator; Region: HTH_MerR1; cd04783" /db_xref="CDD:133410" misc_feature order(1888606..1888614,1888654..1888656,1888705..1888713) /locus_tag="Alide_1829" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133410" misc_feature order(1888747..1888749,1888756..1888758,1888768..1888773, 1888798..1888800,1888825..1888830,1888837..1888839, 1888846..1888848,1888858..1888860,1888876..1888878, 1888888..1888890,1888897..1888902,1888921..1888923, 1888936..1888941,1888957..1888959,1888963..1888965) /locus_tag="Alide_1829" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133410" misc_feature order(1888825..1888827,1888930..1888932,1888957..1888959) /locus_tag="Alide_1829" /note="mercury binding site [ion binding]; other site" /db_xref="CDD:133410" gene 1889304..1889855 /locus_tag="Alide_1830" /db_xref="GeneID:10103877" CDS 1889304..1889855 /locus_tag="Alide_1830" /inference="similar to AA sequence:KEGG:Mpe_A2362" /note="KEGG: mpt:Mpe_A2362 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126465.1" /db_xref="GI:319762528" /db_xref="GeneID:10103877" /translation="MTTSTDKSYFDLHITGLGYLNRIREVKPKKGEAFWACGIAALNG PSDDVSYVRFDTRVSGSEAQHLVRRCIQAVDAEKKVMIGFRLGDLWTDIFTYSKGKRA GEQGVSLKARLLFVSWIKVDGKLVYKAEPKPTDTDERDPEVPVTSDAPATQQASAPES SEPVADAADDAADAPALAVAESF" misc_feature 1889304..1889717 /locus_tag="Alide_1830" /note="Protein of unknown function (DUF3577); Region: DUF3577; pfam12101" /db_xref="CDD:152536" gene 1889911..1890522 /locus_tag="Alide_1831" /db_xref="GeneID:10103878" CDS 1889911..1890522 /locus_tag="Alide_1831" /inference="similar to AA sequence:KEGG:Mpe_A2363" /note="KEGG: mpt:Mpe_A2363 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126466.1" /db_xref="GI:319762529" /db_xref="GeneID:10103878" /translation="MITIPGQLAIKTIHGRNGDFNVGRLATSIGEFVVKNAELDQYRE GKYDGDFVIVEIRPSTYNANGRMVIEIRAHLGGMTLSNIDALSRDEARRLSPQEVDPI DEEAQAPVPATPPAKPKAKPRSPRDPLVDTTPFGSEPAPVSAAASAEADDAALFGSLW PLGETVKLDATVDRRVLRQQRDRLDKLGYEFAPLSQDWHLKAA" misc_feature 1889914..1890513 /locus_tag="Alide_1831" /note="Protein of unknown function (DUF3275); Region: DUF3275; pfam11679" /db_xref="CDD:152115" gene 1890612..1890977 /locus_tag="Alide_1832" /db_xref="GeneID:10103879" CDS 1890612..1890977 /locus_tag="Alide_1832" /inference="similar to AA sequence:KEGG:Mpe_A2364" /note="KEGG: mpt:Mpe_A2364 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126467.1" /db_xref="GI:319762530" /db_xref="GeneID:10103879" /translation="MGWTFVRQTRDQLIRELIAPQASERACCDVIDHTLDGDVLWTVV RVTARQAGVMGLAAGESVCYIGCHLLESSGGDWGYKSLDESAHPYYYSCPLRYLDMAP VQSSEWRERVHRFHAGRTV" gene 1891062..1891712 /locus_tag="Alide_1833" /db_xref="GeneID:10103880" CDS 1891062..1891712 /locus_tag="Alide_1833" /inference="similar to AA sequence:KEGG:Tmz1t_0975" /note="KEGG: tmz:Tmz1t_0975 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126468.1" /db_xref="GI:319762531" /db_xref="GeneID:10103880" /translation="MPAPSSAKPLYRIDECPDLMADGCVGDEQGNLVFLSIWARDTAV QEFLARLTLSRDEQGLDQFHVITEQGASIPVFVGNVENLEKRITRAYRRTLFGSLTNV WLFDRRCVKPDKANASALALLPRDSAHRLDRLWTLVQDTCPLPLLDHWRDTMLELLQT RRMLTGLPLALGPLEGHRLALDVPALTKALGELIRNGTLGAAQYELAANAPLRRVA" gene 1891777..1892886 /locus_tag="Alide_1834" /db_xref="GeneID:10103881" CDS 1891777..1892886 /locus_tag="Alide_1834" /inference="similar to AA sequence:KEGG:Tmz1t_0974" /note="KEGG: tmz:Tmz1t_0974 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126469.1" /db_xref="GI:319762532" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002296" /db_xref="GeneID:10103881" /translation="MALMFPRLARNFIRNGYFPTDEPTLERALSALAPSPGAMSLLDP CAGEGVAIAEAAHALGREQVQAFAVEYDAERARHARQLVDRCIHGDLMDTLISRQSFG LLWLNPPYGDLSKDVNGNIGYQGQGRARLEKLFYQRALPLLQYGGVLVFIVPSYVLDA ELVGWLTRHLKDLRIYRAVETQFKQVVIFGRRVRQRDQASESVKAVRGLLLQIGQGDA EAEELPLEWPFLPYTVPASPAEPEHFYRVTMEPGQFADEVGRLQGLWPALDTHLGAAQ QSLRPPARALSHWHLALALAAGAISGVVKSKSGRVLVVKGDTHKEKTLQTEYTERDDG SVAETRILTDKFVPVIRAWDLTLGSPTWGEVLTIR" misc_feature 1891834..>1892106 /locus_tag="Alide_1834" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1892988..1893293 /locus_tag="Alide_1835" /db_xref="GeneID:10103882" CDS 1892988..1893293 /locus_tag="Alide_1835" /inference="similar to AA sequence:KEGG:Mpe_A2367" /note="KEGG: mpt:Mpe_A2367 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126470.1" /db_xref="GI:319762533" /db_xref="GeneID:10103882" /translation="MALAVLNLASQARFSPGQVVMTAGVDELVRQGRLNPTPYLRRHL HGDWGDLSDSDRRQNDAALKSGEDRLFSSYQVTRDLELWIITEWDRSVTTLLLPSEY" gene 1893393..1894577 /locus_tag="Alide_1836" /db_xref="GeneID:10103883" CDS 1893393..1894577 /locus_tag="Alide_1836" /inference="similar to AA sequence:KEGG:Ajs_2220" /note="KEGG: ajs:Ajs_2220 helicase domain-containing protein" /codon_start=1 /transl_table=11 /product="helicase domain-containing protein" /protein_id="YP_004126471.1" /db_xref="GI:319762534" /db_xref="GeneID:10103883" /translation="MSLDLETVPETAVQGDLLEAAASPLTLSLQDFVSEFGDELLDSL NRANPPVYTGQVRVHRQLILAALKRKLFPAQADVVHAVTELLVDRGERAAIVNGEMGC GKTTVGIATAAVLNAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKL LKLREQLGVPAQGQEFFVLGRVRMRMGFHWKPVFVRRRTPHGDVGACPDCGHVITDLD GEPINPVALEAEESRRKCSHCRALLWSLIRPRGLSASDQSSTVLKALKRIPTIGEVTA QKLMQKFGDAFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGG YQPSEFIKRQLPQGTFDLLIADEAHEYKNGGSAQGQAMGVLAAKARNEPPRVSRRPVG LS" misc_feature 1893579..>1893815 /locus_tag="Alide_1836" /note="DEAD-like helicases superfamily; Region: DEXDc; smart00487" /db_xref="CDD:128763" gene complement(1894569..1895483) /locus_tag="Alide_1837" /db_xref="GeneID:10103884" CDS complement(1894569..1895483) /locus_tag="Alide_1837" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126472.1" /db_xref="GI:319762535" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10103884" /translation="MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSAR AQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIVVARCTVERLMRAMGLQGARRG RAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAASDTSTKVST" misc_feature complement(1894587..1895423) /locus_tag="Alide_1837" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(1894752..1895108) /locus_tag="Alide_1837" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1895480..1895803) /locus_tag="Alide_1838" /db_xref="GeneID:10103885" CDS complement(1895480..1895803) /locus_tag="Alide_1838" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126473.1" /db_xref="GI:319762536" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103885" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature complement(1895546..1895803) /locus_tag="Alide_1838" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1895846..1896214 /locus_tag="Alide_1839" /pseudo /db_xref="GeneID:10103886" gene complement(1896262..1898115) /locus_tag="Alide_1840" /db_xref="GeneID:10103887" CDS complement(1896262..1898115) /locus_tag="Alide_1840" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: mpt:Mpe_A2408 integrase (int)" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004126474.1" /db_xref="GI:319762537" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10103887" /translation="MALSDLAVRQAKATGKAYTLPDLDGLSLAVTAAGGRTWHFRYYW AGKQKRMSLGTYPEVTLREARGLRDEARVLLAKGINPRVHRKQKRTAVRLADENTFDA VYRKWLKHRGLSLKEGRQTTLSILPRIFDKDVLPTLGKRSIYEIKRPDLLEVIAKIEK RRALSVAEKVRTWFNQLFRYALVIVPGLEQNPASDLDVVALPLPPVNHNPFLRMAELP KLLQRLRSYRGRRQTQLGLRVLLLTGVRTGELRQATPDQFDLDRGLWIIPPDVVKQLQ LDMRKKRQQPKDIPPYIVPLSIQAMEIVRHLLDEFKPAQRHLFRHDSDLKKRISENTL NGALKRMGYQERLTGHGIRGTMSTALNEIGYPKVWVDAQLSHVDPNKVSATYNHAEYV EQRRRMMQDWADRLDLFEQNQVEAASMPLTVHLEGVPAFPSEQTASAPSTPVAASPIL LVTKPGDAMPLVSAAAHRLPAVPPPRSAAPLVPSDIQRERMELFDVFEAPHNLPVAAF AKMAGKSRRWISYEIKAGNLLALNVGNRGQRVPDWHLDPLKHELIQSVLKLTRGADPW QIYHALLQPRSMLRGHSALEGVTASNLDKLVMAVSTAVKESEWTPPRVGVA" misc_feature complement(1896904..1898109) /locus_tag="Alide_1840" /note="integrase; Provisional; Region: PRK09692" /db_xref="CDD:170049" misc_feature complement(1896904..1898037) /locus_tag="Alide_1840" /note="Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801" /db_xref="CDD:29502" misc_feature complement(order(1896958..1896960,1896988..1896990, 1897057..1897059,1897066..1897068,1897297..1897299, 1897378..1897380)) /locus_tag="Alide_1840" /note="active site" /db_xref="CDD:29502" misc_feature complement(order(1896958..1896960,1896988..1896990, 1897057..1897059,1897066..1897068,1897297..1897299, 1897378..1897380)) /locus_tag="Alide_1840" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29502" gene complement(1898354..1898427) /locus_tag="Alide_R0025" /note="tRNA-Gly4" /db_xref="GeneID:10103888" tRNA complement(1898354..1898427) /locus_tag="Alide_R0025" /product="tRNA-Gly" /db_xref="GeneID:10103888" gene complement(1898544..1899086) /locus_tag="Alide_1841" /db_xref="GeneID:10103889" CDS complement(1898544..1899086) /locus_tag="Alide_1841" /inference="protein motif:TFAM:TIGR00738" /note="KEGG: ajs:Ajs_1664 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074" /codon_start=1 /transl_table=11 /product="transcriptional regulator, rrf2 family" /protein_id="YP_004126475.1" /db_xref="GI:319762538" /db_xref="InterPro:IPR000944" /db_xref="GeneID:10103889" /translation="MRLTTRGKLAVTAITDVALHSHGHPVALPGISVRQGISLSYLED IFSALRRAGLVHSVRGPGGGYMLTRPPQSLSVAEIVMASEKYMAHANDKAGNAAPSPS SDDMTADLWASFHSRILEYLQSITVADLLAQHRTGADNAGSPAATAQPSQARPHHARE SQLPSRNVPNSVFALGLRAG" misc_feature complement(1898682..1899086) /locus_tag="Alide_1841" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1898691..1899086) /locus_tag="Alide_1841" /note="Rrf2 family protein; Region: rrf2_super; TIGR00738" /db_xref="CDD:129821" gene complement(1899248..1899631) /locus_tag="Alide_1842" /db_xref="GeneID:10103890" CDS complement(1899248..1899631) /locus_tag="Alide_1842" /inference="similar to AA sequence:KEGG:Dtpsy_2039" /note="manually curated; KEGG: dia:Dtpsy_2039 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126476.1" /db_xref="GI:319762539" /db_xref="GeneID:10103890" /translation="MPRWLIAVLTLHILLGLGASAFGKTPTAPLSAQASARSIQTALM HQHTTAPQAQQTATADQASTDGYECSLADTNPDLPDDQSIGLFDAGAGHAPCHCPMAM TTALSSPWLKKQPKRPRAGRMLHRA" sig_peptide complement(1899560..1899631) /locus_tag="Alide_1842" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.960) with cleavage site probability 0.879 at residue 24" gene 1899705..1899965 /locus_tag="Alide_1843" /db_xref="GeneID:10103891" CDS 1899705..1899965 /locus_tag="Alide_1843" /inference="similar to AA sequence:KEGG:Dtpsy_2037" /note="KEGG: dia:Dtpsy_2037 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126477.1" /db_xref="GI:319762540" /db_xref="GeneID:10103891" /translation="MQASPAHPVTQEQPQAPWGWAKYFRMPVYKPGTRVRRAGSWETV SHVSLRRNDLAVFLVGYAEPVDPMDLELEPTVFTTVRVPERY" gene complement(1899977..1900852) /locus_tag="Alide_1844" /db_xref="GeneID:10103892" CDS complement(1899977..1900852) /locus_tag="Alide_1844" /inference="protein motif:TFAM:TIGR00163" /note="KEGG: dia:Dtpsy_2036 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related" /codon_start=1 /transl_table=11 /product="phosphatidylserine decarboxylase" /protein_id="YP_004126478.1" /db_xref="GI:319762541" /db_xref="GO:0004609" /db_xref="InterPro:IPR003817" /db_xref="InterPro:IPR005221" /db_xref="GeneID:10103892" /translation="MSDRLAVLPQYLLPKQLLTSLAGRFASARAGGLTTAAIRRFVAR YQVDMSEAAEPDIAGYSSFNDFFTRALRPGMRPLADAAATCPVDGAVSQLGPIERDQI LQAKGHRYSTTALLGGDAQLAAQFQDGQFATIYLSPRDYHRIHMPCDGRLLRMEHVPG ALFSVNPTTARGVPGLFARNERVVCLFETLLGLMGLVLVGATIVGSVATVWHGQVNPP RTRQPRRWDYQSQQITLRQGEEMGRFLLGSTVVLLFQNGAVEFNPDWAAAHPVRLGEA MAQRPGAWTNSSAPG" misc_feature complement(1900004..1900852) /locus_tag="Alide_1844" /note="Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656" /db_xref="CDD:194662" gene 1901079..1902230 /locus_tag="Alide_1845" /db_xref="GeneID:10103893" CDS 1901079..1902230 /locus_tag="Alide_1845" /inference="protein motif:PFAM:PF00571" /note="manually curated; PFAM: CBS domain containing protein; HPP family protein; KEGG: ajs:Ajs_1669 CBS domain-containing protein; SMART: CBS domain containing protein" /codon_start=1 /transl_table=11 /product="cbs domain containing protein" /protein_id="YP_004126479.1" /db_xref="GI:319762542" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR007065" /db_xref="GeneID:10103893" /translation="MPHEAEAPGPLTRRALAWLCLFMPARVRINQRERLRMVSGIVLS VAVVAVFAHWLGAASPMPWMMASLGSSAVLIISLPSSPLAQPWPVLAGSALSYLVGVA CAALVPNLPLACGLGVGLAVMLMLALRCLHPPGGAMALFAVLHPQEATLMAVVPVSFN VLVLVLAGMAFNHLTGRGYPHAQLRKLTQPKDSDSGAFTSADLDAALSHYNQVLDVSR NDLEGLLHLAGKAAFQRTLGGLRCRQIMSMPVHAVAANTPLQEAWALMRKHAIKALPV VDAQRVVVGIVTMADFMRLANLEVHEGMGQRLRSLIMGRPKRPDQVQGLMSSPVLQVQ ADQHVMDLVPLFSEAGHHHIPVVDEARQLVGIITQSDLVKALAAAVARS" misc_feature 1901124..1902212 /locus_tag="Alide_1845" /note="CBS-domain-containing membrane protein [Signal transduction mechanisms]; Region: COG3448" /db_xref="CDD:33251" misc_feature 1901265..1901621 /locus_tag="Alide_1845" /note="HPP family; Region: HPP; pfam04982" /db_xref="CDD:191148" misc_feature 1901817..1902203 /locus_tag="Alide_1845" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is...; Region: CBS_pair_HPP_assoc; cd04600" /db_xref="CDD:73100" gene 1902478..1902738 /locus_tag="Alide_1846" /db_xref="GeneID:10103894" CDS 1902478..1902738 /locus_tag="Alide_1846" /inference="protein motif:TFAM:TIGR00008" /note="KEGG: dia:Dtpsy_2034 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein" /codon_start=1 /transl_table=11 /product="translation initiation factor if-1" /protein_id="YP_004126480.1" /db_xref="GI:319762543" /db_xref="GO:0003743" /db_xref="InterPro:IPR004368" /db_xref="InterPro:IPR006196" /db_xref="GeneID:10103894" /translation="MAKEELIEMQGSVTEVLPDSRFRVTLDNGHQLIAYTGGKMRKHH IRILAGDKVSLEMSPYDLTKGRITFRHLAGRGPGPGTSSGNR" misc_feature 1902496..1902687 /locus_tag="Alide_1846" /note="S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451" /db_xref="CDD:88417" misc_feature order(1902520..1902528,1902544..1902546,1902580..1902582, 1902589..1902594,1902607..1902618,1902667..1902669, 1902673..1902675) /locus_tag="Alide_1846" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:88417" misc_feature order(1902580..1902582,1902592..1902594,1902685..1902687) /locus_tag="Alide_1846" /note="predicted 30S ribosome binding site; other site" /db_xref="CDD:88417" gene 1902802..1902878 /locus_tag="Alide_R0026" /note="tRNA-Pro1" /db_xref="GeneID:10103895" tRNA 1902802..1902878 /locus_tag="Alide_R0026" /product="tRNA-Pro" /db_xref="GeneID:10103895" gene 1903109..1904158 /locus_tag="Alide_1847" /db_xref="GeneID:10103896" CDS 1903109..1904158 /locus_tag="Alide_1847" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4119 diguanylate cyclase; SMART: GGDEF domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004126481.1" /db_xref="GI:319762544" /db_xref="InterPro:IPR000160" /db_xref="GeneID:10103896" /translation="MTVMAALLMLCCIAAMQLVAAAGLTKAGPVHWLSLVSAAGLVVV YVLIRSGYSQRWEDPALTLFQISSSILCTAVAYVIMGAARGIVLPILAVILFFGMFGL TPRQMLAVLFYGSMVFGIALAIAQWSPEYGGQPLALTVAYMVMIIVVLISCTFLNLRV LAARKKRNELTQAVASEHERAIRDEFTGLYNRRFMLEVMHIEGARAQRSQQPLLVAQL DLDHFKVINDTHGHAVGDQALCAFVRTVTECIRPTDTLARWGGEEFVLLMANTTVENG ERLLERVRAAVQASPVVLASGAAIHLTVSVGAARLQAPQEMPVGLLRRADAALYAAKA QGRNRVAWADDLIEA" sig_peptide 1903109..1903174 /locus_tag="Alide_1847" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.722 at residue 22" misc_feature 1903655..1904131 /locus_tag="Alide_1847" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1903763..1903765,1903892..1903894) /locus_tag="Alide_1847" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1903778..1903780,1903787..1903792,1903802..1903804, 1903814..1903816,1903880..1903882,1903886..1903897) /locus_tag="Alide_1847" /note="active site" /db_xref="CDD:143635" misc_feature order(1903868..1903870,1903952..1903954) /locus_tag="Alide_1847" /note="I-site; other site" /db_xref="CDD:143635" gene 1904164..1904937 /locus_tag="Alide_1848" /db_xref="GeneID:10103897" CDS 1904164..1904937 /locus_tag="Alide_1848" /inference="protein motif:PFAM:PF07786" /note="PFAM: protein of unknown function DUF1624; KEGG: ajs:Ajs_1672 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126482.1" /db_xref="GI:319762545" /db_xref="InterPro:IPR012429" /db_xref="GeneID:10103897" /translation="MPASSRHGERGAARYDLLDAWRGLAMLWMTVFHFCFDLSHFDYW PQDFRADPFWTVQRTLIVSLFLLCAGLGQAVAWQQGVGWGRFFRRWGRIVGCALLVTA GSYAMFPRSFIYFGVLHGMALMLLVVRLTAGWGRWLWLAGLLAVASPWLAAWALEGPL AGWARYFNGHALNWLGWVSRKPFTEDYVPVFPWIGVMWWGMACGQWLLARRAPWIAGP LPRAAAPLAALGRYSLGYYMLHQPVMIGALMLWGWLGRP" misc_feature 1904203..1904889 /locus_tag="Alide_1848" /note="Protein of unknown function (DUF1624); Region: DUF1624; cl01394" /db_xref="CDD:154378" gene complement(1904949..1905251) /locus_tag="Alide_1849" /db_xref="GeneID:10103898" CDS complement(1904949..1905251) /locus_tag="Alide_1849" /inference="protein motif:TFAM:TIGR00988" /note="TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: dia:Dtpsy_1390 integration host factor, beta subunit; SMART: histone family protein DNA-binding protein" /codon_start=1 /transl_table=11 /product="integration host factor, beta subunit" /protein_id="YP_004126483.1" /db_xref="GI:319762546" /db_xref="GO:0003677" /db_xref="InterPro:IPR000119" /db_xref="InterPro:IPR005685" /db_xref="GeneID:10103898" /translation="MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIE IRGFGSFSVSHRPPRMGRNPRSGEAVHIPEKRVPHFKPGKALREAVDQRSAKTAAQ" misc_feature complement(1904985..1905248) /locus_tag="Alide_1849" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature complement(order(1904985..1904987,1905006..1905008, 1905012..1905014,1905024..1905029,1905093..1905095, 1905108..1905113,1905120..1905134,1905144..1905149, 1905156..1905161,1905168..1905170,1905213..1905215, 1905225..1905227,1905234..1905236,1905243..1905248)) /locus_tag="Alide_1849" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" misc_feature complement(order(1905000..1905002,1905009..1905011, 1905015..1905017,1905027..1905029,1905057..1905068, 1905075..1905077,1905081..1905086,1905090..1905092, 1905102..1905104,1905111..1905116,1905120..1905122, 1905126..1905128,1905171..1905173,1905240..1905248)) /locus_tag="Alide_1849" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" gene complement(1905372..1907057) /locus_tag="Alide_1850" /db_xref="GeneID:10103899" CDS complement(1905372..1907057) /locus_tag="Alide_1850" /inference="protein motif:TFAM:TIGR00717" /note="KEGG: dia:Dtpsy_1391 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein" /codon_start=1 /transl_table=11 /product="ribosomal protein s1" /protein_id="YP_004126484.1" /db_xref="GI:319762547" /db_xref="InterPro:IPR000110" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR018032" /db_xref="GeneID:10103899" /translation="MSESFAALFEESLQRTEMRPGEVITAEVVRVEHNFVVVNAGLKS EAYVPIDEFKNDQGEIEVQVGDFVSVAIGSIENGYGDTILSRDTAKRLASWLSLEKAL ESGEFVTGTTSGKVKGGLTVLVNGIRAFLPGSLIDTRPVKDLTPYENKTMEFKVIKLD RKRNNVVLSRRAVVEASMGEERAKLMETLKEGAIVNGVVKNITEYGAFVDLGGIDGLL HITDMAWRRVRHPSEVVQAGQEITAKILKFDTEKNRVSLGLKQMGDDPWMGVSRRYPS GTRLFGKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPNKLVSLGDEVEVMVLE IDEDKRRISLGMKQCRANPWQEFAQNTKRGDRVKGPIKSITDFGVFVGLAAGIDGLVH LSDLSWNEPGESAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDGDPFTTFVTVNDK GQTVSGKVKTVDARGAEIDLGNDIVGYLRASEISRDRVEDARNVLKEGDEVTAVVVNV DRKTRNIQLSIKAKDQADQQEAMAHLSAQSAKENAGTTSLGALLRAKLDNSDK" misc_feature complement(1905381..1907057) /locus_tag="Alide_1850" /note="30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299" /db_xref="CDD:180520" misc_feature complement(1906797..1906997) /locus_tag="Alide_1850" /note="S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687" /db_xref="CDD:88442" misc_feature complement(order(1906911..1906913,1906917..1906919, 1906947..1906949,1906971..1906973)) /locus_tag="Alide_1850" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88442" misc_feature complement(1906545..>1906688) /locus_tag="Alide_1850" /note="S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec2_hs2; cd04465" /db_xref="CDD:88430" misc_feature complement(order(1906662..1906664,1906668..1906670)) /locus_tag="Alide_1850" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88430" misc_feature complement(1906284..1906487) /locus_tag="Alide_1850" /note="S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of...; Region: S1_RPS1_repeat_ec3; cd05688" /db_xref="CDD:88443" misc_feature complement(order(1906401..1906403,1906407..1906409, 1906434..1906436,1906458..1906460)) /locus_tag="Alide_1850" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88443" misc_feature complement(1906023..1906238) /locus_tag="Alide_1850" /note="S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of...; Region: S1_RPS1_repeat_ec4; cd05689" /db_xref="CDD:88444" misc_feature complement(order(1906143..1906145,1906149..1906151, 1906179..1906181,1906203..1906205)) /locus_tag="Alide_1850" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88444" misc_feature complement(1905762..1905968) /locus_tag="Alide_1850" /note="S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of...; Region: S1_RPS1_repeat_ec5; cd05690" /db_xref="CDD:88445" misc_feature complement(order(1905882..1905884,1905888..1905890, 1905918..1905920,1905942..1905944)) /locus_tag="Alide_1850" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88445" misc_feature complement(1905489..1905707) /locus_tag="Alide_1850" /note="S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of...; Region: S1_RPS1_repeat_ec6; cd05691" /db_xref="CDD:88446" misc_feature complement(order(1905621..1905623,1905627..1905629, 1905657..1905659,1905681..1905683)) /locus_tag="Alide_1850" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88446" gene complement(1907238..1909262) /locus_tag="Alide_1851" /db_xref="GeneID:10103900" CDS complement(1907238..1909262) /locus_tag="Alide_1851" /EC_number="2.7.4.14" /EC_number="2.5.1.19" /inference="protein motif:TFAM:TIGR01356" /note="TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; cytidylate kinase; KEGG: dia:Dtpsy_1392 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); cytidylate kinase region" /codon_start=1 /transl_table=11 /product="3-phosphoshikimate 1-carboxyvinyltransferase" /protein_id="YP_004126485.1" /db_xref="GI:319762548" /db_xref="GO:0003866" /db_xref="GO:0004127" /db_xref="GO:0005524" /db_xref="InterPro:IPR001986" /db_xref="InterPro:IPR003136" /db_xref="InterPro:IPR006264" /db_xref="InterPro:IPR011994" /db_xref="GeneID:10103900" /translation="MFSTAFLDLPPLASAGGTVQLPGSKSISNRVLLLAALSQGTTEV HDLLSSDDTRVMLDALRAIGCTVDEAGGGRVRITGLGGPDGTLPRSPTKLFMGNAGTA MRPLTAALALLGGEFELSGVPRMHERPIGDLVDALRQLGCRIDFLGNEGYPPLSIQHA AGLPALRLHEPIRVRGDVSSQFLTALLMALPLVAKEQDVVIEVVGELISRPYIHITLE LLARFGIAVRHEEWQRFTIPAGSRYRSPGQIHVEADASSASYFIALGAIAESPKGQKG IKILGVGQDSIQGDIRFVEAARAMGAQITGGPNWLQIERGSWPLRAIDLDCNHIPDAA MTLAVMALYAQGTTTLRNIASWRVKETDRLAAMACELAKLGASVEEGADYLRITPPAR PADWKSASIRTYDDHRVAMCFSLAAFNPAGLPVRIEDPKCVAKTFPDYFEALFLVARA DTALIPVICIDGPTASGKGTVAASVARQLGYHFLDSGALYRITALAATRAGIAIDQAG EQRIADLARGLPVRFEGERIWLGQDDVTEAIRTEEAGMNASRVSALPAVRMALVALQH GFRRLPGLVADGRDMGTVIFPAAPLKVFLTASVECRAERRHKQLISKGISANIFDLRA QLEARDARDQSRAVAPLKPAQDALLLESSALTVEQAVAQVLDWWQARQPF" misc_feature complement(1907241..1909262) /locus_tag="Alide_1851" /note="bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional; Region: PRK11860" /db_xref="CDD:183342" misc_feature complement(1907931..1909214) /locus_tag="Alide_1851" /note="EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-...; Region: EPSP_synthase; cd01556" /db_xref="CDD:30129" misc_feature complement(order(1908501..1908512,1909191..1909202)) /locus_tag="Alide_1851" /note="hinge; other site" /db_xref="CDD:30129" misc_feature complement(order(1907958..1907960,1908039..1908044, 1908174..1908176,1908183..1908188,1908198..1908200, 1908267..1908269,1908627..1908629,1908636..1908638, 1908720..1908728,1908879..1908881,1908960..1908965, 1908969..1908971,1909173..1909175,1909185..1909190)) /locus_tag="Alide_1851" /note="active site" /db_xref="CDD:30129" misc_feature complement(1907304..1907894) /locus_tag="Alide_1851" /note="Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020" /db_xref="CDD:73296" misc_feature complement(order(1907355..1907357,1907523..1907528, 1907589..1907591)) /locus_tag="Alide_1851" /note="CMP-binding site; other site" /db_xref="CDD:73296" misc_feature complement(order(1907364..1907366,1907376..1907378)) /locus_tag="Alide_1851" /note="The sites determining sugar specificity; other site" /db_xref="CDD:73296" gene complement(1909262..1910146) /locus_tag="Alide_1852" /db_xref="GeneID:10103901" CDS complement(1909262..1910146) /locus_tag="Alide_1852" /EC_number="1.3.1.12" /inference="protein motif:PRIAM:1.3.1.12" /note="KEGG: dia:Dtpsy_1393 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase" /codon_start=1 /transl_table=11 /product="prephenate dehydrogenase" /protein_id="YP_004126486.1" /db_xref="GI:319762549" /db_xref="InterPro:IPR003099" /db_xref="GeneID:10103901" /translation="MFEQLGLIGCGLMGGSFALAMKKAGLVQRVVGYSKSPSTTERAR QLGVIDVEAPSALLAAAGADIVLLAVPVAATEATLKAIKHLVTPQMLVMDVGSTKADV VKAARSALQGQLGSFVPAHPITGREVSGVEHADAGLYHGRQVILTPTERTLTAQLRRA EDLWTQLGARVSSMSPESHDAAFAAVSHLPHMLAFAMLSSINAQPNANELLALAGPGF RDFTRIAASDPKMWRDILRANRDEVLAQSRLFKQALQGLEDAMQADSDQPLEDLITLA SHTRAHWRMGAQRGHKDA" misc_feature complement(1909304..1910146) /locus_tag="Alide_1852" /note="cyclohexadienyl dehydrogenase; Validated; Region: PRK07502" /db_xref="CDD:181004" misc_feature complement(1909307..1910137) /locus_tag="Alide_1852" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(1910157..1911257) /locus_tag="Alide_1853" /db_xref="GeneID:10103902" CDS complement(1910157..1911257) /locus_tag="Alide_1853" /inference="protein motif:TFAM:TIGR01807" /note="KEGG: dia:Dtpsy_1394 chorismate mutase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein" /codon_start=1 /transl_table=11 /product="chorismate mutase" /protein_id="YP_004126487.1" /db_xref="GI:319762550" /db_xref="GO:0004106" /db_xref="InterPro:IPR001086" /db_xref="InterPro:IPR002701" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR008242" /db_xref="InterPro:IPR010957" /db_xref="InterPro:IPR018528" /db_xref="InterPro:IPR020822" /db_xref="GeneID:10103902" /translation="MSTTPQASPALADLRVQIDSLDHQLLQLVNQRARVAEQVGELKK REGTPFFRPDRVAQVIEKIQGANPGPLKNAHVAAIWREIMSACLALESPQRVAVLGPE GTFCEQAAIEYFGGAADLMYCNSFDEVFHATAAGSAQYGVVGVENSNEGVVTRSLDMF LHTPCHVVGEVSLLIRHNLLRSVNSAEGIEAVLAHPQALAQCHAWLAKHLPHAERRPV SSNSEGARLAATNPAWAGISSERAAQQYGLHVVAHAIQDDAYNRTRFAIICLPHTLAT PAPTGRDCTSLIISVPNRPGAVHDLLVPLKKHGVSMTRFESRPARTGQWEYYFYIDLE GHPAEANVAAALAELQQLCAFYKLLGTYPVAA" misc_feature complement(1911006..1911227) /locus_tag="Alide_1853" /note="Chorismate mutase type II; Region: CM_2; cl00693" /db_xref="CDD:186149" misc_feature complement(1910163..1910984) /locus_tag="Alide_1853" /note="Prephenate dehydratase [Amino acid transport and metabolism]; Region: PheA; COG0077" /db_xref="CDD:30426" misc_feature complement(1910454..1910972) /locus_tag="Alide_1853" /note="Prephenate dehydratase; Region: PDT; pfam00800" /db_xref="CDD:144409" misc_feature complement(1910169..1910405) /locus_tag="Alide_1853" /note="C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905" /db_xref="CDD:153177" misc_feature complement(order(1910301..1910312,1910361..1910372)) /locus_tag="Alide_1853" /note="putative L-Phe binding site [chemical binding]; other site" /db_xref="CDD:153177" gene complement(1911376..1912485) /locus_tag="Alide_1854" /db_xref="GeneID:10103903" CDS complement(1911376..1912485) /locus_tag="Alide_1854" /EC_number="2.6.1.52" /inference="protein motif:TFAM:TIGR01364" /note="TIGRFAM: phosphoserine aminotransferase; KEGG: dia:Dtpsy_1395 phosphoserine aminotransferase; PFAM: aminotransferase class V" /codon_start=1 /transl_table=11 /product="phosphoserine aminotransferase" /protein_id="YP_004126488.1" /db_xref="GI:319762551" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR003248" /db_xref="InterPro:IPR020578" /db_xref="GeneID:10103903" /translation="MNRPYNFSAGPAAIPEEVLQQAAAEMLDWHGSGMGVMEMSHRGK EFIAIYEQAEADLRELLAIPPGFRILFMQGGGIAENAIVPLNLSRAATVDFVVTGSWS QKSRKEAQKYAAEVRTAASSEEGGFTTLPDPATWQLSRGASYVHVCSNETIHGIEFQE LPDLRALGCDAPLVVDFSSHVASRPVDWSRVGLAFGGAQKNIGPAGLTLVVVREDLLG HALPICPSAFDYKIVADNQSMYNTPPTWGVYMAGLTFQWLKRQREGDATGVAAMERRN IAKAKLFYDYIDGSQFYVNKVAANCRSRMNVPFFLRDESRNEAFLAGAKERGLLQLKG HKSVGGMRASLYNAMPLAGVQALVDYMRDFERAAT" misc_feature complement(1911388..1912473) /locus_tag="Alide_1854" /note="Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active...; Region: PSAT_like; cd00611" /db_xref="CDD:99736" misc_feature complement(order(1911757..1911765,1911871..1911873, 1912150..1912155,1912162..1912164,1912255..1912257, 1912264..1912269,1912444..1912446,1912450..1912455, 1912468..1912470)) /locus_tag="Alide_1854" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99736" misc_feature complement(order(1911481..1911483,1911886..1911891, 1911958..1911960,1912030..1912032,1912183..1912185, 1912255..1912260,1912459..1912461)) /locus_tag="Alide_1854" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:99736" misc_feature complement(order(1911886..1911891,1911952..1911954, 1911958..1911960,1912030..1912032,1912183..1912185, 1912255..1912263)) /locus_tag="Alide_1854" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99736" misc_feature complement(1911886..1911888) /locus_tag="Alide_1854" /note="catalytic residue [active]" /db_xref="CDD:99736" gene complement(1912552..1915242) /locus_tag="Alide_1855" /db_xref="GeneID:10103904" CDS complement(1912552..1915242) /locus_tag="Alide_1855" /EC_number="5.99.1.3" /inference="protein motif:TFAM:TIGR01063" /note="SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: ajs:Ajs_2464 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller" /codon_start=1 /transl_table=11 /product="DNA gyrase, a subunit" /protein_id="YP_004126489.1" /db_xref="GI:319762552" /db_xref="GO:0003677" /db_xref="GO:0003918" /db_xref="GO:0005524" /db_xref="InterPro:IPR002205" /db_xref="InterPro:IPR005743" /db_xref="InterPro:IPR006691" /db_xref="InterPro:IPR018247" /db_xref="GeneID:10103904" /translation="MVLHLKWLFPAVSTAVVMTQFAKETLPISLEEEMRRSYLDYAMS VIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAV YDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKIAHEMLADIDKETV DFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRNP ESSIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAI IVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVL NNLYKQTQLQDTFGMNMVALVDGQPKLCNLKELIEVFLQHRREVVTRRTVFELRKARE RGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTREDGGV VNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKDVMA VIENLLDILAKPARVSTIIGEELSALRQEFGQTRLGARRSTIEHSAQDLSTEDLITPT DMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSN RGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRYVFMA TSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSDSGKAVRFD ENDVRPMGRNARGVKGMQLEDGQSVIAMLVAEDENQSVLTATENGYGKRTSITEYTRH GRGTKGMIAIQQSERNGRVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGV TLISLDEGAKLSGLQRIVENDANTAEADGADTAPAADDPH" misc_feature complement(1912612..1915179) /locus_tag="Alide_1855" /note="DNA gyrase subunit A; Validated; Region: PRK05560" /db_xref="CDD:180128" misc_feature complement(1913641..1915104) /locus_tag="Alide_1855" /note="DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in...; Region: TOP4c; cd00187" /db_xref="CDD:29149" misc_feature complement(order(1914715..1914717,1914724..1914795, 1914799..1914855,1914859..1915008,1915021..1915104)) /locus_tag="Alide_1855" /note="CAP-like domain; other site" /db_xref="CDD:29149" misc_feature complement(1914826..1914828) /locus_tag="Alide_1855" /note="Active site [active]" /db_xref="CDD:29149" misc_feature complement(order(1913752..1913802,1913968..1913973, 1914004..1914015,1914022..1914030)) /locus_tag="Alide_1855" /note="primary dimer interface [polypeptide binding]; other site" /db_xref="CDD:29149" misc_feature complement(1913401..1913544) /locus_tag="Alide_1855" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(1913263..1913394) /locus_tag="Alide_1855" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(1913077..1913211) /locus_tag="Alide_1855" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(1912927..1913070) /locus_tag="Alide_1855" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(1912771..1912917) /locus_tag="Alide_1855" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(1912624..1912764) /locus_tag="Alide_1855" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" gene 1915356..1916078 /locus_tag="Alide_1856" /db_xref="GeneID:10103905" CDS 1915356..1916078 /locus_tag="Alide_1856" /inference="protein motif:PFAM:PF00691" /note="PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_1397 OmpA/MotB domain protein" /codon_start=1 /transl_table=11 /product="ompa/motb domain protein" /protein_id="YP_004126490.1" /db_xref="GI:319762553" /db_xref="InterPro:IPR006664" /db_xref="InterPro:IPR006665" /db_xref="GeneID:10103905" /translation="MVTDDVPDSQHGCGFFPKRRTMKKLNKLAMLLASAVIATSAGAQ VKAADGGKVIDNWQNGSGELVWKNGTNELCWRDANWTPATAAEGCDGALVKAAAAPAP APAPAPVAAPPAAPKPAPAVASKVTYAADAFFDFDKSVLKPEGKAKLDDLVSKVKGIN LEVIIAVGHTDSIGTDAYNQKLSVRRAEAVKAYLVSKGIEKNRVYTEGKGEKQPIADN KTKEGRAKNRRVEIEVVGTRTN" sig_peptide 1915356..1915487 /locus_tag="Alide_1856" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.823) with cleavage site probability 0.617 at residue 44" misc_feature 1915752..1916057 /locus_tag="Alide_1856" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature order(1915761..1915766,1915863..1915868,1915875..1915877, 1915887..1915892,1915899..1915901,1916025..1916027, 1916037..1916039) /locus_tag="Alide_1856" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene 1916158..1916871 /locus_tag="Alide_1857" /db_xref="GeneID:10103906" CDS 1916158..1916871 /locus_tag="Alide_1857" /EC_number="2.1.1.64" /inference="protein motif:TFAM:TIGR01983" /note="TIGRFAM: ubiquinone biosynthesis O-methyltransferase; KEGG: dia:Dtpsy_1398 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11" /codon_start=1 /transl_table=11 /product="ubiquinone biosynthesis o-methyltransferase" /protein_id="YP_004126491.1" /db_xref="GI:319762554" /db_xref="GO:0008425" /db_xref="InterPro:IPR010233" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10103906" /translation="MNEFVNADPAELAKFSELAHRWWDPDSEFRPLHQINPLRLEWIN QLSPLEGQKALDVGCGGGILSDSMARKGAEVTGIDLASKALRVARLHALEAQTPRVQY REISVEELAQESPGSFDTVTCMEMLEHVPDPQSVVTACAHLVKPGGWVFFSTINRNAK AFALAIVGAEYLLKMLPQGTHEYAKFIRPSELAGACRNAGLDVLQVRGMQYNPLTGRY WLSGDTSVNYMFAARRLST" misc_feature 1916173..1916859 /locus_tag="Alide_1857" /note="bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional; Region: PRK05134" /db_xref="CDD:179944" misc_feature 1916314..1916616 /locus_tag="Alide_1857" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(1916326..1916346,1916392..1916397,1916470..1916478, 1916527..1916529) /locus_tag="Alide_1857" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1916868..1917545 /locus_tag="Alide_1858" /db_xref="GeneID:10103907" CDS 1916868..1917545 /locus_tag="Alide_1858" /inference="protein motif:TFAM:TIGR01449" /note="KEGG: ajs:Ajs_2461 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="YP_004126492.1" /db_xref="GI:319762555" /db_xref="GO:0008967" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006346" /db_xref="InterPro:IPR006402" /db_xref="InterPro:IPR006439" /db_xref="GeneID:10103907" /translation="MKTNPFRAARAVLFDLDGTLIDSAPDLGAAADRLRTDRGLQPLP LQAYRPMAGAGARGMLEVAFGIAPDHPDFPGLKDEFLANYERCIHDRTSVFDGVPELV DALTQRSLKWGVVTNKVTRFTSLIAQRVALFDSAGVIVSGDSTPYSKPHPAPLLEAVF RLGLAAHECIYVGDDARDIVAGRAAGMSTVAALYGYLGSGALPQQWGADAMIETPMDL LNLLGLD" misc_feature 1916895..1917536 /locus_tag="Alide_1858" /note="Predicted phosphatases [General function prediction only]; Region: Gph; COG0546" /db_xref="CDD:30892" misc_feature 1917135..1917440 /locus_tag="Alide_1858" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature 1917213..1917215 /locus_tag="Alide_1858" /note="motif II; other site" /db_xref="CDD:119389" gene 1917558..1917934 /gene="ssrA" /locus_tag="Alide_R0027" /db_xref="GeneID:10103908" tmRNA 1917558..1917934 /gene="ssrA" /locus_tag="Alide_R0027" /note="tmRNA as predicted by Rfam (RF00023), score 196.22" /db_xref="GeneID:10103908" gene complement(1918163..1918834) /locus_tag="Alide_1859" /db_xref="GeneID:10103909" CDS complement(1918163..1918834) /locus_tag="Alide_1859" /inference="protein motif:PFAM:PF02586" /note="PFAM: protein of unknown function DUF159; KEGG: tin:Tint_2914 protein of unknown function DUF159" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126493.1" /db_xref="GI:319762556" /db_xref="InterPro:IPR003738" /db_xref="GeneID:10103909" /translation="MCNRYVAPDPAAIERHWQARASQPSVWAASIHPRAPGPFIRAEG GARALVVGQWGLIPFFAKMAKLPYSTNNARSEELAAKPTFRDPWKRGQRCIIPAVSFD EPCWETGKNVWWRFRRVDGAPWGLAGLWNTWADKATGELVESYTMLTLNADAHPLMRR MHKPEPDLLPDAQDKRSVIPIDADDVEQWLRGTVDEAQSLLRLAPVETFDTGPVSAAS HSSLL" misc_feature complement(1918223..1918831) /locus_tag="Alide_1859" /note="Uncharacterised ACR, COG2135; Region: DUF159; cl03646" /db_xref="CDD:194657" gene 1918890..1919375 /locus_tag="Alide_1860" /db_xref="GeneID:10103910" CDS 1918890..1919375 /locus_tag="Alide_1860" /inference="protein motif:PFAM:PF00717" /note="PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: tin:Tint_2913 peptidase S24/S26A/S26B, conserved region" /codon_start=1 /transl_table=11 /product="peptidase s24/s26a/s26b, conserved region protein" /protein_id="YP_004126494.1" /db_xref="GI:319762557" /db_xref="InterPro:IPR019759" /db_xref="GeneID:10103910" /translation="MHSIKAHPTDTRARLLGPAQIDAHVLRLPVGAVHVALGFPSPAE DFEDDRVDLNEMLVRNPPATFLYRAEGWSMIQAGICDGDVLVVDRSVRPQHGDVVIAM WDGNAPVCKVLHVCGDHVELHGRNPAIASIVLPPDTEVEIFAVVGVARQMRREHGRVG R" misc_feature 1919082..1919330 /locus_tag="Alide_1860" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature order(1919106..1919108,1919220..1919222) /locus_tag="Alide_1860" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 1919375..1920661 /locus_tag="Alide_1861" /db_xref="GeneID:10103911" CDS 1919375..1920661 /locus_tag="Alide_1861" /EC_number="2.7.7.7" /inference="protein motif:PRIAM:2.7.7.7" /note="KEGG: tin:Tint_2912 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_004126495.1" /db_xref="GI:319762558" /db_xref="InterPro:IPR001126" /db_xref="InterPro:IPR017963" /db_xref="GeneID:10103911" /translation="MFALIDGNNFYASCERVFQPELRGRPLVVLSNNDGCAIARSDEA KALGVKMGQAIHQVAPDVRKQLAVRSANFALYGDMSARVLAILRDAAPRVEPYSIDES FLDLTGMRDREAFARELHERVHRWTGIPNCVGIGATKTLAKLGNFVAKSSVRKPGSYP ASLSGVADLAALSPQALAEVLTATPVGELWGVGPRWSARLRELGIATALQLRDAQRDL ILERFGVVLSRTQRELSGDPCLALEEVEPDRQQIMVSRSFGERVENHQSISEAFATFA VRACEKLRARGLVTGAIGIFANTDHFRLELRQHHPQRTTDLPRATSDTRVVLDTLRRM QRGFLKDGFAYKKAGVWLMDLGRPEQIQPDLFAPSTIGNDKLMSAMDAINRRYGRGTV GLGATGWRERPQWGMRQANLSLHFTTSLRDLPRAHC" misc_feature 1919375..1920652 /locus_tag="Alide_1861" /note="DNA polymerase V subunit UmuC; Reviewed; Region: umuC; PRK03609" /db_xref="CDD:179607" misc_feature 1919381..1920436 /locus_tag="Alide_1861" /note="umuC subunit of DNA Polymerase V; Region: PolY_Pol_V_umuC; cd01700" /db_xref="CDD:176454" misc_feature order(1919390..1919395,1919402..1919407,1919498..1919500, 1919507..1919509,1919672..1919677,1919822..1919824) /locus_tag="Alide_1861" /note="active site" /db_xref="CDD:176454" misc_feature order(1919666..1919668,1919675..1919677,1919942..1919962, 1920047..1920049,1920122..1920139,1920218..1920220, 1920275..1920289,1920293..1920295) /locus_tag="Alide_1861" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176454" gene complement(1920658..1921122) /locus_tag="Alide_1862" /db_xref="GeneID:10103912" CDS complement(1920658..1921122) /locus_tag="Alide_1862" /inference="similar to AA sequence:KEGG:MCA2632" /note="KEGG: mca:MCA2632 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126496.1" /db_xref="GI:319762559" /db_xref="GeneID:10103912" /translation="MSKKHRGRFEGESIVRHLPSPAGGVKLETFVPWRLVQRGVKKEV ITPLDAPQAFREQAEAERQTRAAARDTPMMRALGLAHHWQRLLDEQRAASVAEIAEAE GIDSSQVHRLMRLTLLAPDVVEKLVGQPGLTVEKVLGRPWPYGWREQVRLLP" gene complement(1921119..1921505) /locus_tag="Alide_1863" /db_xref="GeneID:10103913" CDS complement(1921119..1921505) /locus_tag="Alide_1863" /inference="similar to AA sequence:KEGG:MCA2633" /note="KEGG: mca:MCA2633 prophage LambdaMc01, site-specific recombinase resolvase family protein, truncation" /codon_start=1 /transl_table=11 /product="prophage lambdamc01, site-specific recombinase resolvase family protein, truncation" /protein_id="YP_004126497.1" /db_xref="GI:319762560" /db_xref="GeneID:10103913" /translation="MKDGQLETFVPMTLRRRGVQRLVQHPVVEEREAHDSALIEGVGR AFHWQRLLDTGEMESGSAIARSEGLHQSVINELLRLTLLAPDIIEQLMAGRQPRRMSL IWFQRHPLPVDWEAQRAIVRGFEGPA" gene complement(1921502..1922881) /locus_tag="Alide_1864" /db_xref="GeneID:10103914" CDS complement(1921502..1922881) /locus_tag="Alide_1864" /inference="protein motif:PFAM:PF00239" /note="PFAM: Resolvase domain; Recombinase; KEGG: mca:MCA2634 prophage LambdaMc01, site-specific recombinase resolvase family protein" /codon_start=1 /transl_table=11 /product="resolvase domain protein" /protein_id="YP_004126498.1" /db_xref="GI:319762561" /db_xref="GO:0000150" /db_xref="GO:0003677" /db_xref="InterPro:IPR006119" /db_xref="InterPro:IPR011109" /db_xref="GeneID:10103914" /translation="MAETASPKARKRCAVYCRVSSDERLDQEFNSIDAQKEAGHAYIV SQRAEGWIPVADDYDDPGFSGGNTERPALKRLLADIQDGRIDIVVVYKIDRLTRSLTD FSKMVDVFERQSVSFVSVTQQFNTTTSMGRLTLNILLSFAQFEREVTGERIRDKIAAA KKKGMWMGGVPTIGYDVVNRLLVINKDEAAVVRRMFEEMLTIGSPTQIAARLSDEGVT TKAWTTQDGRVRTGTRIDKKYIHKVLRNRIYLGELSNRGTWYPGAHQPIIEQELWDKV HAVLARNSHERGVDTKIRSRNDALLRGLLYAPSGERMYPTYSRKNGRKYQYYVSKSES RFGAPGKSYERLPAAEIEAAVVAQIRTVLTSPESIASVVRHIQNNGGQVDEASTVMAM ARLNDVWDQLFPVERHRVANLMIERVDLVHTDEMQGIRVRWRELGWDTLIGEFAPRGV GAELLEVEA" misc_feature complement(1922150..1922851) /locus_tag="Alide_1864" /note="Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961" /db_xref="CDD:32144" misc_feature complement(1922417..1922836) /locus_tag="Alide_1864" /note="Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768" /db_xref="CDD:58117" misc_feature complement(order(1922588..1922590,1922597..1922602, 1922822..1922824,1922828..1922830)) /locus_tag="Alide_1864" /note="catalytic residues [active]" /db_xref="CDD:58117" misc_feature complement(1922822..1922824) /locus_tag="Alide_1864" /note="catalytic nucleophile [active]" /db_xref="CDD:58117" misc_feature complement(order(1922447..1922449,1922459..1922464, 1922468..1922473,1922603..1922605)) /locus_tag="Alide_1864" /note="Presynaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(1922441..1922443,1922450..1922452, 1922459..1922464,1922471..1922476,1922483..1922485, 1922567..1922572,1922585..1922587)) /locus_tag="Alide_1864" /note="Synaptic Antiparallel dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(1922426..1922428,1922438..1922440, 1922447..1922449,1922459..1922461,1922468..1922473, 1922480..1922485,1922510..1922518)) /locus_tag="Alide_1864" /note="Synaptic Flat tetramer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(1922426..1922428,1922438..1922440, 1922447..1922449,1922459..1922461,1922468..1922470, 1922516..1922518)) /locus_tag="Alide_1864" /note="Synaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(1922423..1922428,1922444..1922446)) /locus_tag="Alide_1864" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:58117" misc_feature complement(1922033..1922323) /locus_tag="Alide_1864" /note="Recombinase; Region: Recombinase; pfam07508" /db_xref="CDD:191763" gene complement(1922881..1923327) /locus_tag="Alide_1865" /db_xref="GeneID:10103915" CDS complement(1922881..1923327) /locus_tag="Alide_1865" /inference="similar to AA sequence:KEGG:MCA2635" /note="KEGG: mca:MCA2635 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126499.1" /db_xref="GI:319762562" /db_xref="GeneID:10103915" /translation="MNENPSSIAAQISDLGHLPMAELWTLWDRYFERRPPHPNRTHVE SRFAYKLQEQAFGGLAAETRQRLEAIGAKHSRIKLRAKPRALNFAPGTVLLREWATRD HRVTVTAEGLFEYEGRCFKSLTAVARQITGQHRSGPEFFGLLKGGN" misc_feature complement(1922899..1923306) /locus_tag="Alide_1865" /note="Protein of unknown function (DUF2924); Region: DUF2924; pfam11149" /db_xref="CDD:192712" gene complement(1923324..1923518) /locus_tag="Alide_1866" /db_xref="GeneID:10103916" CDS complement(1923324..1923518) /locus_tag="Alide_1866" /inference="similar to AA sequence:KEGG:MCA2636" /note="KEGG: mca:MCA2636 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126500.1" /db_xref="GI:319762563" /db_xref="GeneID:10103916" /translation="MTTIELPSPSEMTPAARAAEVSSILAAAIVRTLVAPEATEGAVR LGFLPDQRVHATPSQPEKLS" gene 1923698..1923976 /locus_tag="Alide_1867" /db_xref="GeneID:10103917" CDS 1923698..1923976 /locus_tag="Alide_1867" /inference="protein motif:PFAM:PF01381" /note="KEGG: sml:Smlt1898 HTH transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain protein" /protein_id="YP_004126501.1" /db_xref="GI:319762564" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10103917" /translation="MSFGQFIRKTREAKEIQMNDFARQLEISPAYWSRIERDMEKPPK DELIRKAAEILGISADDAFVEASRLPPDIRDDVGNLVRMYRRNVTEKK" misc_feature 1923707..1923886 /locus_tag="Alide_1867" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene 1923977..1924240 /locus_tag="Alide_1868" /db_xref="GeneID:10103918" CDS 1923977..1924240 /locus_tag="Alide_1868" /inference="similar to AA sequence:KEGG:NIDE0076" /note="KEGG: nde:NIDE0076 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126502.1" /db_xref="GI:319762565" /db_xref="GeneID:10103918" /translation="MAVLTLDYRCCNRKLPLYIKHAEVERIAATARQQLVVDSIDSVS FDALRQISGLKINGIDFALEVSTVDFHAKLTHHFHRILTHPGS" gene complement(1924725..1926704) /locus_tag="Alide_1869" /db_xref="GeneID:10103919" CDS complement(1924725..1926704) /locus_tag="Alide_1869" /EC_number="3.5.2.9" /inference="protein motif:PRIAM:3.5.2.9" /note="KEGG: ara:Arad_14159 hydantoin utilization protein B; PFAM: Hydantoinase B/oxoprolinase" /codon_start=1 /transl_table=11 /product="5-oxoprolinase (ATP-hydrolyzing)" /protein_id="YP_004126503.1" /db_xref="GI:319762566" /db_xref="InterPro:IPR003692" /db_xref="GeneID:10103919" /translation="MDAVRTAIMSNRFNAIVEEASAAVYRTAHTTFVKLVQDYQCAVA TVDGDMFAYPMLSGVNVFVGSPLKPTLDAIGRENLKPGDIVITNDPFTTDGLVTHLMD ITLLYPIFRDDRLIAIGWAFVHASDIGGAVPGSISPAFTEVFQEGLRLRPVKLYEGGV LNTTVKAILADNSRIPGEVWGDIQAMISGLKSIDRRVNELCGRYGGQAVEQAMQDVIS YAESKARTAIASIPDGVYDFSDYLEGINDRQIAFFSARMTVSKGEIHLDFSGTDPQLP AAYNLVSGASTHPYVVQCLYAFILTMDPLTPRNAGILRAIYSYTPRGTVLNAVFPASG GSRAASATRAYDVLLGCINQALPEGLAAADSGNAGVIVVAAPDPRTGRDRVNVINTIH GGGGARRSRDGVDGTAVRYSQRSVPVEIIEVETAMIMRAIRIVPDSRRAGRYVSGAAL QMEIENTAHRAVMTVRNMNRFVFSAWGFRGGEHGVKGTAVLNPGRPDERSIGKISVLE LNRGDVIQITSPTGGGFGDPMERDLAAIASEIRNGMLSTERASQVYAVVFDEHGQIDE VATAARRRERTRADTPEFTFCDERLRQDQVWPQDMRRQLAAMALTYDQRIRSQLVGTV HHRMMNDGHQVDTKIIQQMVDDEAANMTGVRRLSV" misc_feature complement(1925016..1926704) /locus_tag="Alide_1869" /note="N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: HyuB; COG0146" /db_xref="CDD:30495" gene complement(1926708..1931224) /locus_tag="Alide_1870" /pseudo /db_xref="GeneID:10103920" gene 1927947..1928375 /locus_tag="Alide_1871" /db_xref="GeneID:10103921" CDS 1927947..1928375 /locus_tag="Alide_1871" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126504.1" /db_xref="GI:319762567" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103921" /translation="MLKDPQTPRYAQRRTHRTYTPQFKAELVAACRQPGASVAAVALQ HGMNANVLHRWLKEWAQGFHRLEAGVSTAVVASPPPAFIPIDLSAVPPASAGELPSAS LPTPADGIRIECQRPGMSVTVHWPLSGAAECAQMLRELLR" misc_feature 1927983..1928189 /locus_tag="Alide_1871" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1928372..1928704 /locus_tag="Alide_1872" /db_xref="GeneID:10103922" CDS 1928372..1928704 /locus_tag="Alide_1872" /inference="protein motif:PFAM:PF05717" /note="PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like" /codon_start=1 /transl_table=11 /product="is66 orf2 family protein" /protein_id="YP_004126505.1" /db_xref="GI:319762568" /db_xref="InterPro:IPR008878" /db_xref="GeneID:10103922" /translation="MIRIDEAWLATTPLDMRAGTDTALARVIATFGAAHPHHAYVFAN QRANRLKVLVHDGVGLWLAARRLHQGKFVWAPAGSPNVALEHAQLNALVLGLPWQRVG SQGAISVV" misc_feature 1928378..1928677 /locus_tag="Alide_1872" /note="putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; cl14891" /db_xref="CDD:196852" gene 1928787..1930301 /locus_tag="Alide_1873" /db_xref="GeneID:10103923" CDS 1928787..1930301 /locus_tag="Alide_1873" /inference="similar to AA sequence:KEGG:Dtpsy_2523" /note="KEGG: dia:Dtpsy_2523 transposase IS66" /codon_start=1 /transl_table=11 /product="transposase is66" /protein_id="YP_004126506.1" /db_xref="GI:319762569" /db_xref="GeneID:10103923" /translation="MVIDEQALSELDAEQLREVTQRLLAELRHQRALNEKLTYECALL KRLKFAAQSERHSADQKSLLEDEIDADLAAVAVEIEQLQPPAAAPEAKQQPKRQPLPA HLPRREIRHEPESTTCACGCRMQRIGEDVAEKLDYVPGVFTVERYIRGKWACTQCETI TQAPVEAHVIDKGIPTAGLLAQVLVAKYQDHQPLYRQENIFGRAGLAIPRSTLAQWVG TCGARLQPLVDALKAEVLGHRVLHGDETPVAMLKPGSGKTHRAYLWAYAPGAFEATRA VVYDFCESRAGEHARAFLGDWRGSLICDDYAGYKASFSQGVTEAGCLAHARRKFFDLH AAGKSQIAELALMQFARVYEIERQVQPLAAPERLQVRQQHSRPILDALHQWMVLQRQQ VAGNSATAKALDYSLKRWAALTRFVDDPQLPPDNNWIENQIRPVALGRSNWLFAGSLR AGQRAAAVMSLIQSARMNGHDPYAYLKDVLTRLPTHKASRIEELLPHRWQPIDI" misc_feature 1928889..1929113 /locus_tag="Alide_1873" /note="Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007" /db_xref="CDD:193480" misc_feature 1929117..1929281 /locus_tag="Alide_1873" /note="putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; cl14891" /db_xref="CDD:196852" misc_feature 1929300..1930148 /locus_tag="Alide_1873" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1931238..1932152) /locus_tag="Alide_1874" /db_xref="GeneID:10103924" CDS complement(1931238..1932152) /locus_tag="Alide_1874" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126507.1" /db_xref="GI:319762570" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10103924" /translation="MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSAR AQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIVVARCTVERLMRAMGLQGARRG RAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAASDTSTKVST" misc_feature complement(1931256..1932092) /locus_tag="Alide_1874" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(1931421..1931777) /locus_tag="Alide_1874" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1932149..1932472) /locus_tag="Alide_1875" /db_xref="GeneID:10103925" CDS complement(1932149..1932472) /locus_tag="Alide_1875" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126508.1" /db_xref="GI:319762571" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10103925" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature complement(1932215..1932472) /locus_tag="Alide_1875" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene complement(1932516..1932785) /locus_tag="Alide_1876" /pseudo /db_xref="GeneID:10103926" gene complement(1932782..1933078) /locus_tag="Alide_1877" /db_xref="GeneID:10103927" CDS complement(1932782..1933078) /locus_tag="Alide_1877" /inference="similar to AA sequence:KEGG:Bpro_4342" /note="manually curated; KEGG: pol:Bpro_4342 sarcosine oxidase alpha subunit" /codon_start=1 /transl_table=11 /product="sarcosine oxidase alpha subunit" /protein_id="YP_004126509.1" /db_xref="GI:319762572" /db_xref="GeneID:10103927" /translation="MFRKISPPSTPPLTLSIDGKSVTAERGETVASVMMRQADPSCRH TPVHGSSRAPFCMMGVCFDCLAIVDGASSTQTCLVPVAEGMCVERQLGRPKVAS" misc_feature complement(<1932794..1933030) /locus_tag="Alide_1877" /note="Uncharacterized anaerobic dehydrogenase [General function prediction only]; Region: COG3383" /db_xref="CDD:33190" gene complement(1933026..1934186) /locus_tag="Alide_1878" /db_xref="GeneID:10103928" CDS complement(1933026..1934186) /locus_tag="Alide_1878" /inference="protein motif:PFAM:PF01266" /note="PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_4343 FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="fad dependent oxidoreductase" /protein_id="YP_004126510.1" /db_xref="GI:319762573" /db_xref="GO:0016491" /db_xref="InterPro:IPR006076" /db_xref="GeneID:10103928" /translation="MQREYDVIVAGAGIVGAAIAYGLAGYDKRVLMLDGADRDYRAAK ANFGLVWVQGKGYRYPEYHRLSAAAADAWPEFAAGLEAETGISLDYQTGSGLKFCLSD DELSARAKMLDAWEAETPELAPSVRILDRSELARRYPTMRLGPDVVGASLGEQDGQVN PLRLLAALQAAFQRRGGMVRNGHPVTSIKPLAGGGFEVKTSEQTARAERVVIAAGLGS VALGRMIGLDVPLHPERGQILVTERLAPVLPVPASGLRQTGEGTVMIGVTQEDVGYDL STTSAAAVRMTRKALRILPELGKARLVRQWSCLRVMTPDGYPVYASSQMYPGAEIATC HSGVTLASFHAGPYAQALASGRHLQTLNAFPLERFNVSKNQSPQHTTADALH" misc_feature complement(1933080..1934186) /locus_tag="Alide_1878" /note="Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:31009" misc_feature complement(1933239..1933949) /locus_tag="Alide_1878" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" gene 1934534..1935460 /locus_tag="Alide_1879" /db_xref="GeneID:10103929" CDS 1934534..1935460 /locus_tag="Alide_1879" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4348 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126511.1" /db_xref="GI:319762574" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103929" /translation="MSMKITLRHLEAFRAVMVRRTVTGAAEMLGVTQPVVTRLIADLE QRIAIALFTRDKGRLAPTPEATLLFADVNQSLMGIERIANAASGIKALKLGHLEIAAA PNMALSFLPRAIASFSLERPETLITMHMHSSSTVLDMVQSGRCHLGFAMVPVHATRHG NSETLVSAKMVGVIPVGHLLATRKVLNPEDFEGESFISMAPLMETRMKIDSLMLSYGV NRRINVETQISSVVIRLVEAGAGISIIDPLTATGYTGDQVRFIPFKPDIVTDYSMVIS PRNSSTLVLKPFIDHARREIRKMVPTHLIVRG" misc_feature 1934540..1935430 /locus_tag="Alide_1879" /note="DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013" /db_xref="CDD:182899" misc_feature 1934552..1934728 /locus_tag="Alide_1879" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1934822..1935409 /locus_tag="Alide_1879" /note="The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold; Region: PBP2_LysR_opines_like; cd08415" /db_xref="CDD:176107" misc_feature order(1934864..1934869,1934873..1934878,1934885..1934887, 1934897..1934899,1934903..1934923,1935200..1935217, 1935233..1935238,1935242..1935247) /locus_tag="Alide_1879" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176107" gene complement(1935751..1936677) /locus_tag="Alide_1880" /db_xref="GeneID:10103930" CDS complement(1935751..1936677) /locus_tag="Alide_1880" /EC_number="3.5.1.2" /inference="protein motif:TFAM:TIGR03814" /note="TIGRFAM: Glutaminase, core; KEGG: thermolabile glutaminase (glutaminase A); PFAM: Glutaminase, core" /codon_start=1 /transl_table=11 /product="glutaminase, core" /protein_id="YP_004126512.1" /db_xref="GI:319762575" /db_xref="GO:0004359" /db_xref="InterPro:IPR015868" /db_xref="GeneID:10103930" /translation="MGHAALETLQGFLVGLDARMKRAHKRGRVAHYIPQLASVDVHQF GISVCLASGERLSAGDAATPFSIQSISKVFSLAIALGRHGDRLWKRVGNEPSNYTFNS VIELEQEGGKPRNPFVNAGALVTTDAMLDAPDAGCGLDELMDFVRTAAGDDRISIDEQ VAASEYRTAYRNFSLAYFLRSCGNLHMECERLLQIYCRQCAITMNCEQLASAGRFLAG FDSAAHLLNPAQARSINALMLLAGHYDGSGDFAYSVGFPGKSGVGGGILAVVPGHASI AVWSPGLNAFGNSLLGTRALQELSEFTGWSVF" misc_feature complement(1935754..1936605) /locus_tag="Alide_1880" /note="Glutaminase; Region: Glutaminase; cl00907" /db_xref="CDD:193972" gene complement(1936681..1937868) /locus_tag="Alide_1881" /db_xref="GeneID:10103931" CDS complement(1936681..1937868) /locus_tag="Alide_1881" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="TIGRFAM: amidohydrolase; KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004126513.1" /db_xref="GI:319762576" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="InterPro:IPR017439" /db_xref="GeneID:10103931" /translation="MTVQDTLQAVRAHEDEFIALRRDIHQHPELPFEELRTSDLVAAR LRDWGYHVERGLGGTGVVGQLKRGDGTRTLGLRADMDALPIQETTGLQYASRNQGVMH ACGHDGHTAMLLAAAKVLAEQGDFSGTLNLIFQPAEEYGTSDCGAVRMMNDGLFDKYP CDAIFSMHNMPGWPQGHLIFREGPMMASSDKVYITLVGHGGHGAVPHKAADPVVAAAS LVMALQTVVSRNVDPLQAAVVTVGVLQSGRANNVIPDSAHLELSVRALDPEVRSLLQQ RITEIVHAQAQCFGVKAEIDYRRGYAALINSKDETDFARQIGTELVGAERVVPQAPPL TGSEDFAFMLEKRPGCYLLIGNGDGDKLGACMVHNPGYDFNDANLAIGAAYWALLARR YLA" misc_feature complement(1936723..1937859) /locus_tag="Alide_1881" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature complement(1936723..1937826) /locus_tag="Alide_1881" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature complement(order(1936765..1936767,1937365..1937367, 1937452..1937454,1937551..1937553,1937557..1937559)) /locus_tag="Alide_1881" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature complement(order(1937083..1937091,1937107..1937109, 1937113..1937118,1937128..1937148,1937197..1937199, 1937206..1937208,1937215..1937217,1937227..1937232, 1937296..1937298)) /locus_tag="Alide_1881" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene complement(1937906..1939246) /locus_tag="Alide_1882" /db_xref="GeneID:10103932" CDS complement(1937906..1939246) /locus_tag="Alide_1882" /inference="similar to AA sequence:KEGG:Rmet_5758" /note="KEGG: rme:Rmet_5758 major facilitator protein family permease" /codon_start=1 /transl_table=11 /product="major facilitator protein family permease" /protein_id="YP_004126514.1" /db_xref="GI:319762577" /db_xref="InterPro:IPR005829" /db_xref="GeneID:10103932" /translation="MGIQNSSMGDVALSPTSQGASNISTAATSKVQPRVVAATVAGNA LEFFDFTTYAFFAVYIGQTFFPADEPLVTVMLSVAVFGVGFITRPLGGLLIGAFADRA GRKPAMLLTIALITVGTIGMALTPSYASIGLAAPIIVIACRLVQGLALGGEVGPSTTY LIEIAPQGRRGLYGSWQLASQGIASLAAGIVGIVLTLALSKEQMLAWGWRIPFLLGLA LIPIAVFLRRHMPESLEQPTHSGPIKSPLADIRHHLRPIMLALMVILGVTISTYAAIY MTTYAVTTLKLSATIAMSATIVFGVATWAGALLGGWLSDLYGRKPVMLWARVALFVLV YPAYMLLIEHTSVATLALATALLALLTGIGGAPTLVAIPELFPGHVRALGLSIAYAFG VALFGGTAQLVITWLIKVTDNPAAPALYVLITSLIAIVGILLMRETGGDKELQK" misc_feature complement(1937942..1939141) /locus_tag="Alide_1882" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(1937963..1939123) /locus_tag="Alide_1882" /note="metabolite-proton symporter; Region: 2A0106; TIGR00883" /db_xref="CDD:188094" misc_feature complement(order(1938056..1938058,1938065..1938067, 1938071..1938073,1938080..1938085,1938092..1938097, 1938128..1938130,1938137..1938142,1938152..1938154, 1938161..1938166,1938173..1938175,1938326..1938328, 1938338..1938340,1938347..1938349,1938359..1938361, 1938371..1938373,1938413..1938415,1938428..1938433, 1938440..1938442,1938692..1938694,1938710..1938715, 1938722..1938727,1938761..1938763,1938770..1938775, 1938782..1938787,1938794..1938799,1938959..1938964, 1938968..1938973,1938983..1938985,1938992..1938997, 1939004..1939006,1939073..1939078,1939082..1939090, 1939097..1939099)) /locus_tag="Alide_1882" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 1939373..1940275 /locus_tag="Alide_1883" /db_xref="GeneID:10103933" CDS 1939373..1940275 /locus_tag="Alide_1883" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4525 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein lysr" /protein_id="YP_004126515.1" /db_xref="GI:319762578" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR003006" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103933" /translation="MNLRHLEYLLAVADTGSFSRAAERCHITQSALSRSIQTLEDDFG ARLIDRMGKRNELTPFGQTVASRARRMVLDAVELKRSAQLLQDGYLGVIRIGLGAGPT ALLMQPFLRYMACMHPGVQVSLESGPPELQTRRLRERGFDALVVDLRSVTPADDLLIE DLGQMRGGFICRVGHPLTKFNTPITFAHLQRYPLASTSLNPELARLLITRYGPAADPQ VAVTLRCNDINSLLHAVHGSDAVFLGLISPAREAIANGSLVELPITPALNEGARFAFV TLADRTEAPAMGIFRQFVAEHLHD" misc_feature 1939373..1940266 /locus_tag="Alide_1883" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 1939379..1939558 /locus_tag="Alide_1883" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1939649..1940254 /locus_tag="Alide_1883" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature order(1939691..1939696,1939700..1939705,1939712..1939714, 1939724..1939726,1939730..1939750,1940036..1940053, 1940069..1940074,1940078..1940083) /locus_tag="Alide_1883" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(1940344..1941141) /locus_tag="Alide_1884" /db_xref="GeneID:10103934" CDS complement(1940344..1941141) /locus_tag="Alide_1884" /inference="similar to AA sequence:KEGG:Sde_2785" /note="KEGG: sde:Sde_2785 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126516.1" /db_xref="GI:319762579" /db_xref="GeneID:10103934" /translation="MRYPVMTEKHVADRWQVSLKTLRRWRLDGQGPIWHKLFRHVRYH EVDILEFERRSAQFLMTLLGIDREFKPADEDVGAAFDAQGSRYLTAKDIAEAASLPLH IFQDRAERERKQIPHLMLGGNLRFSLQAILEPVPVVRHQPGRQRRQQRLAIPLQPSSA QRWRLRPTCWACNTTASTSTLAFGSGLGMCRTSTPTSAACAAGCGASRAWPPSTWRLT WAGFACWIARPDLPRSPRQCWFWLSGLELIRTFREKSLTFLLLLSKR" misc_feature complement(1940980..1941129) /locus_tag="Alide_1884" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene complement(1941276..1941770) /locus_tag="Alide_1885" /db_xref="GeneID:10103935" CDS complement(1941276..1941770) /locus_tag="Alide_1885" /inference="similar to AA sequence:KEGG:AFE_1417" /note="manually curated; KEGG: afr:AFE_1417 acetyltransferase, GNAT family" /codon_start=1 /transl_table=11 /product="acetyltransferase, gnat family" /protein_id="YP_004126517.1" /db_xref="GI:319762580" /db_xref="GeneID:10103935" /translation="MSLDLVAPQPLTSDHHCIDFSCGEPVLDEWLKRRAMANQISGAS RTFVAADKEHRVYGYYAMAAGAVSHQLATGSVRRNMPDPVPVMVLARLAVDTQAQGIK LGGSLLQDAVNRAVNVAQNTGVRALLVHALHERAKLFYEYYGFQASPADPLVLMLRLS QAKP" misc_feature complement(1941333..>1941497) /locus_tag="Alide_1885" /note="Acetyltransferases [General function prediction only]; Region: RimI; COG0456" /db_xref="CDD:30804" gene complement(1941767..1942033) /locus_tag="Alide_1886" /db_xref="GeneID:10103936" CDS complement(1941767..1942033) /locus_tag="Alide_1886" /inference="protein motif:PFAM:PF08681" /note="PFAM: protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126518.1" /db_xref="GI:319762581" /db_xref="InterPro:IPR014795" /db_xref="GeneID:10103936" /translation="MRAAAINLRALPEQRDLIDHAANLLGKNRSDFMLEAACERAQSV VLDQVHFTLDADKFQQFVDLLDAPPQPNTGLERLFALKPVWNKV" misc_feature complement(1941773..1942033) /locus_tag="Alide_1886" /note="Protein of unknown function (DUF1778); Region: DUF1778; cl01845" /db_xref="CDD:154623" gene complement(1942264..1943520) /locus_tag="Alide_1887" /db_xref="GeneID:10103937" CDS complement(1942264..1943520) /locus_tag="Alide_1887" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1692 major facilitator superfamily transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126519.1" /db_xref="GI:319762582" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10103937" /translation="MTSPDTPRWYFGWNIVAAATVLTTLTVGLRLGLGPLFLPMAEDL GFSRSMLSSIVAVGMLCYGAATPLAGWLVARRGTRFVLLAGTVMLVGSTLWAVTARTP LQLLLSFGILMSIGAGFTSPVALTPVISRWFNRRRGMALFFLSTGSMAGIAIMTPALG LALQHASWQATLLGFAVLFAAITVPAALFLIRDEAPLDGDAPLPGAHRAANPVVPVGQ HYTVLQAMRTSTFLKITLGMFACGFSMNLLGTHGMPMLMDHGFDATTSALGIGLIGLV AIPSTLVLGRLADRLPRRKLLAAIYCVRGVGFFSLLLAGSTLELYGTSVIGGIAWAGS IALSSAILADVYGVRLVGVLYGWTYVGHQVGAMISSWLGGWGYEHFGTHWLAFGLSGA LLMMAAGVALLLPGRRPPLPAARATA" misc_feature complement(1942369..1943403) /locus_tag="Alide_1887" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(1942423..1942425,1942432..1942437, 1942444..1942449,1942456..1942461,1942492..1942494, 1942501..1942506,1942516..1942518,1942525..1942530, 1942537..1942539,1942678..1942680,1942690..1942692, 1942699..1942701,1942711..1942713,1942723..1942725, 1942762..1942764,1942771..1942776,1942783..1942788, 1942795..1942797,1943065..1943067,1943083..1943088, 1943095..1943100,1943134..1943136,1943143..1943148, 1943155..1943160,1943167..1943172,1943311..1943316, 1943320..1943325,1943335..1943337,1943344..1943349, 1943356..1943358)) /locus_tag="Alide_1887" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 1943704..1944495 /locus_tag="Alide_1888" /db_xref="GeneID:10103938" CDS 1943704..1944495 /locus_tag="Alide_1888" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2008 gluconate 5-dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004126520.1" /db_xref="GI:319762583" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10103938" /translation="MARTVQQLFDLSGKTALVTGGSRGLGLQMAQALGEAGARIMLSS RKAEDLEQAVAELQAAGIDARWIAADCAREDDIQRLASETLQRMGDVDILVNNAGATW GAPAEDHPLAAWDKVMNLNVRGYFLLSQAIAKHSMIPRRGGRIINVASIAGLAGNPFE MKTIAYNTSKGAVLNFTRALAGEWGVYGICVNAICPGFFKTKMTTVLIETLSEEKMAT HAPLRRLGDDEDLKGITLLYASEAGKHITGQWLAVDGGVSAILGG" misc_feature 1943707..1944483 /locus_tag="Alide_1888" /note="gluconate 5-dehydrogenase; Provisional; Region: PRK08213" /db_xref="CDD:181295" misc_feature 1943728..1944480 /locus_tag="Alide_1888" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(1943761..1943763,1943767..1943772,1943776..1943778, 1943833..1943841,1943992..1944000,1944145..1944153, 1944199..1944201,1944211..1944213,1944289..1944300) /locus_tag="Alide_1888" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1944064..1944066,1944151..1944153,1944199..1944201, 1944211..1944213) /locus_tag="Alide_1888" /note="active site" /db_xref="CDD:187535" gene 1944559..1944984 /locus_tag="Alide_1889" /db_xref="GeneID:10103939" CDS 1944559..1944984 /locus_tag="Alide_1889" /inference="protein motif:PFAM:PF03061" /note="PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_1696 hypothetical protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004126521.1" /db_xref="GI:319762584" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10103939" /translation="MLDFGADIPFVKELGFTLRRMHGGESELHYQARPEHTNSFGVMH GGAVMTLLDVAMATAARSDTLDTGVVTIEMKTSFMRPARGPMVARGKLIQRTRSMAFA EAWVYDAEGRLCSQSTGTFKYVPRAQPAAGQGGGAISTD" misc_feature 1944598..1944924 /locus_tag="Alide_1889" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(1944685..1944687,1944769..1944771,1944790..1944801) /locus_tag="Alide_1889" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(1944688..1944690,1944694..1944696,1944703..1944705, 1944772..1944786,1944790..1944792) /locus_tag="Alide_1889" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(1944691..1944693,1944715..1944720,1944727..1944732, 1944769..1944771) /locus_tag="Alide_1889" /note="PHB binding site; other site" /db_xref="CDD:48038" gene 1945078..1946094 /locus_tag="Alide_1890" /db_xref="GeneID:10103940" CDS 1945078..1946094 /locus_tag="Alide_1890" /inference="protein motif:PFAM:PF00107" /note="PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: ajs:Ajs_1697 alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase zinc-binding domain protein" /protein_id="YP_004126522.1" /db_xref="GI:319762585" /db_xref="GO:0008270" /db_xref="GO:0016491" /db_xref="InterPro:IPR013149" /db_xref="GeneID:10103940" /translation="MPRNTQILLDNRPRGQASPDNFRLVVGDTPALRDGQVLVRHHYL SLDPYMRGRMNEGKSYAACQPLGEVMIGGTVGEVAESYHPAYAVGDKVVGMGGWQEWS VVDGDAPGMLRKVDTRHVPLSYYLGAVGMPGVTAWYGLVRIIDPRPGQTLVVSAASGA VGSAFGALAKARGCRVVGIAGGPDKCRYVTEELGFDACIDHRAHGDLASMSKALKQAC HDGIDGHFENVGGYILDAVLLRANAFARVALCGMIAGYDGQPLPLANPALILINRMRI EGFIVSEHMEVWPEALAELGGLVASGRLRPRETIAQGLAAAPQAFLDLLQGRNFGKQL VKLI" misc_feature 1945084..1946088 /locus_tag="Alide_1890" /note="Putative NADP-dependent oxidoreductases [General function prediction only]; Region: COG2130" /db_xref="CDD:32313" misc_feature 1945087..1946082 /locus_tag="Alide_1890" /note="Prostaglandin dehydrogenases; Region: PGDH; cd05288" /db_xref="CDD:176190" misc_feature order(1945219..1945221,1945468..1945470,1945480..1945482, 1945552..1945560,1945615..1945620,1945630..1945632, 1945678..1945680,1945759..1945764,1945825..1945839, 1945843..1945845,1945912..1945920,1946047..1946052, 1946056..1946058,1946062..1946064) /locus_tag="Alide_1890" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176190" misc_feature order(1945222..1945224,1945843..1945845,1945921..1945923) /locus_tag="Alide_1890" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176190" misc_feature order(1945231..1945233,1945243..1945245,1945807..1945809, 1945822..1945833,1945840..1945842,1945882..1945887, 1945894..1945917,1945924..1945926) /locus_tag="Alide_1890" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176190" gene 1946171..1947094 /locus_tag="Alide_1891" /db_xref="GeneID:10103941" CDS 1946171..1947094 /locus_tag="Alide_1891" /inference="similar to AA sequence:KEGG:Ajs_1699" /note="KEGG: ajs:Ajs_1699 glutathione S-transferase-related protein" /codon_start=1 /transl_table=11 /product="glutathione s-transferase-related protein" /protein_id="YP_004126523.1" /db_xref="GI:319762586" /db_xref="GeneID:10103941" /translation="MTELILHHYPASPFAHKARCVLGFKRLAWRSVIVPSVMPKPDVV ALTGGYRRTPFLQIGADIYCDTALICDVLEHLRPEPTLYPPHLKGVSRVFAQWADTML FTAAMAYNLQPRAAEALFAGFPEGAAQAFSADRRAMGMAHPHPQDAAAAYRSYLRRIA NMVEEHDFLFGSEPCVADFAAYHPLWFTRQCVPVMADILSATPAVLEWMDRLAALGQG RAEKLSAQDAITVAAGAVPQPLPPEVFQDEHGIALGSHVSIAAESFGTEPTVGLLVAA TRTRYTLARTDPRAGDLHVHFPRIGYVLRPA" misc_feature 1946180..1946836 /locus_tag="Alide_1891" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature 1946180..1946392 /locus_tag="Alide_1891" /note="Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic...; Region: GST_N_family; cd00570" /db_xref="CDD:48493" misc_feature order(1946210..1946212,1946216..1946221,1946225..1946230, 1946237..1946242,1946369..1946371,1946378..1946383) /locus_tag="Alide_1891" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48493" misc_feature order(1946210..1946212,1946324..1946332,1946363..1946368) /locus_tag="Alide_1891" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48493" misc_feature order(1946324..1946326,1946360..1946365,1946369..1946374, 1946381..1946383) /locus_tag="Alide_1891" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48493" misc_feature <1946606..1946806 /locus_tag="Alide_1891" /note="Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and...; Region: GST_C_family; cd00299" /db_xref="CDD:48103" misc_feature order(1946696..1946698,1946705..1946710,1946717..1946719, 1946729..1946731) /locus_tag="Alide_1891" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48103" gene complement(1947174..1947767) /locus_tag="Alide_1892" /db_xref="GeneID:10103942" CDS complement(1947174..1947767) /locus_tag="Alide_1892" /inference="similar to AA sequence:KEGG:Dtpsy_2002" /note="KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126524.1" /db_xref="GI:319762587" /db_xref="GeneID:10103942" /translation="MFECRFALVLCAALALPAAAAPRGDAGAAAPAQAAQPPALSVSP DGTLVIDQRARLAWPRCVEGMRWTGSHCAGLARLLTYGEAQALARQRWKDSGVAWRLP RVNELRRLVNRSAQPPSVDQRLFPATPRDWHWTGTASVNTGSVNPYAYGNVMRGGAGE SSMTVQQSWAVDMASGQARGDVGRGTRLVVRLVRPAP" sig_peptide complement(1947705..1947767) /locus_tag="Alide_1892" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.939 at residue 21" misc_feature complement(1947432..1947623) /locus_tag="Alide_1892" /note="Protein of unknown function (DUF1566); Region: DUF1566; pfam07603" /db_xref="CDD:148943" gene 1948256..1949659 /locus_tag="Alide_1893" /db_xref="GeneID:10103943" CDS 1948256..1949659 /locus_tag="Alide_1893" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1703 major facilitator superfamily transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126525.1" /db_xref="GI:319762588" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10103943" /translation="MSARPGIGPVIDDGLAPSARRQAMLVIILGLTLAVLDTSLVNLA LPDIARQLQSNAAQSIWVVNAYQLATLIVLLPLAALGERMGYRRVYLVGIALFSAASV GAMLASSMLALIVARALQGLGAAGVMAVNAALVRLIYPRAQLGQGMAINSLVVATASM AGPSVAAAILSVASWPWLFAMNLPLGLGIWWLGRRALPANPPSEHDGPRFSAIDVLLN GTMFTLIFLGGAQLGVRGQAQGAGGVAGGWLLAAGLAVGAVFLRRQWRLAAPLFPVDL LRIPVFALSMGSSVGAFCAQMLGFLALPFLLLEAQGRSHLEAGLLITAWPLATALVAP LAGRMIGRYPDGLLGGIGMAVFAAGLLSLGLLPAQPADWNVVWRMALCGAGFALFQSP NNHTIVSSAPLHRSGAASGMLGTARLTGQTLGAVVLAAIFALRPGHDGSAESLALLLA AGCAFAAGVCSSLRVRA" misc_feature 1948322..1949527 /locus_tag="Alide_1893" /note="drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711" /db_xref="CDD:129794" misc_feature 1948325..>1948852 /locus_tag="Alide_1893" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(1948367..1948369,1948376..1948384,1948388..1948393, 1948442..1948444,1948451..1948456,1948463..1948465, 1948475..1948480,1948484..1948489,1948625..1948630, 1948637..1948642,1948649..1948654,1948661..1948663, 1948697..1948702,1948709..1948714,1948730..1948732) /locus_tag="Alide_1893" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 1949659..1951134 /locus_tag="Alide_1894" /db_xref="GeneID:10103944" CDS 1949659..1951134 /locus_tag="Alide_1894" /EC_number="4.1.99.3" /inference="protein motif:PRIAM:4.1.99.3" /note="KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein" /codon_start=1 /transl_table=11 /product="deoxyribodipyrimidine photo-lyase" /protein_id="YP_004126526.1" /db_xref="GI:319762589" /db_xref="InterPro:IPR002081" /db_xref="InterPro:IPR005101" /db_xref="InterPro:IPR006050" /db_xref="InterPro:IPR018394" /db_xref="GeneID:10103944" /translation="MQQGATASALVWLRRDLRCDDHAALYHALRRFGRVYCAFVFDTD ILDALPTRSDRRVEFIHASVLELHQGLAELAARSGAPGGGLIVRHGPAPECIVRLARS LGVQEVLANRDYEPQAIERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGV FTPYRRAWLQRLDAFQLTPYPVASHARHLAAPPAGECLPTLQELGFARTNLHELPLPT GMRGAQQLLQDFMPRMAAYHEARDYPGRKGVSYLSVHLRFGTVSIRQLAALAAAQAAQ GCEGAQAWLSELAWRDFYFMILWHHPQVATQSFKPVYDRVQWDDAPELWQAWCGARTG YPLVDAAMRQLHQTGYMHNRLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNG GWQWAASTGCDAQPWFRIFNPVTQSQKFDPQGRFIRCYLPELARVPDAHIHFPAAMGP LELAACGLRLGVDYPLPVVDHARARERTLMRFHFLGASEGG" misc_feature 1949674..1951113 /locus_tag="Alide_1894" /note="Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]; Region: PhrB; COG0415" /db_xref="CDD:30764" misc_feature 1949683..1950204 /locus_tag="Alide_1894" /note="DNA photolyase; Region: DNA_photolyase; pfam00875" /db_xref="CDD:189751" misc_feature 1950313..1951104 /locus_tag="Alide_1894" /note="FAD binding domain of DNA photolyase; Region: FAD_binding_7; pfam03441" /db_xref="CDD:146197" gene complement(1951139..1951705) /locus_tag="Alide_1895" /db_xref="GeneID:10103945" CDS complement(1951139..1951705) /locus_tag="Alide_1895" /inference="similar to AA sequence:KEGG:Ajs_1629" /note="KEGG: ajs:Ajs_1629 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126527.1" /db_xref="GI:319762590" /db_xref="GeneID:10103945" /translation="MPAPAREESTLYAGEEYHRGGTRTAAQLRVSHLAPLMLYNALKL THVLSIIVWIGGMVFAHLFLRPAAQRLEPPQRVQLMHDVLQRFLGAVAVAIVVVLTSG LGMIGAVSVGSGGAFSMPLDWTIMATLGIVMMGIFAYIYFALLSRLEQAVATSDWSAG GQALGRIRAWVGVNLLIGVVVVAQTVLM" misc_feature complement(1951202..1951570) /locus_tag="Alide_1895" /note="Copper resistance protein D; Region: CopD; cl00563" /db_xref="CDD:193872" gene complement(1951686..1954046) /locus_tag="Alide_1896" /db_xref="GeneID:10103946" CDS complement(1951686..1954046) /locus_tag="Alide_1896" /EC_number="2.1.1.14" /inference="protein motif:TFAM:TIGR01371" /note="TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: ajs:Ajs_1630 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein" /codon_start=1 /transl_table=11 /product="5- methyltetrahydropteroyltriglutamate/homocysteine s-methyltransferase" /protein_id="YP_004126528.1" /db_xref="GI:319762591" /db_xref="GO:0003871" /db_xref="InterPro:IPR002629" /db_xref="InterPro:IPR006276" /db_xref="InterPro:IPR013215" /db_xref="GeneID:10103946" /translation="MAATPVLTHTLGFPRMGAQRELKFALERHWRGEIDAAALEAVGA ELRARHWQAQRDAGLAFVTVGDFAFYDHVANHIQLLGCESARFGFAPDTPELARYFAM ARGVQAQAHGAPGCGAGCTHAAHEGAGQSALEMTKWFDTNYHYLVPELHAGTAFSLAS ERLFGEVAQAQALGHRVKAVLVGPLTFLWLSKEKGDTPFDRLALLDRLLPVYAQILAR LKTQGVEWVQIDEPILGLDLPAAWSQAFEPAYWQLGKAGPQVLLATYFSPLEDHLRLA CQLPVAGLHVDAVRAPHELTGVADWLPGYKVLSVGVVDGRNIWRTDPDAALALLRPVA DKHQGPLWIAPSCSLLHVPVSLAGEDALDAELRSWLTFATEKLGELGLLAALLDGRAG DGDPRLADARAAAASRRASARVHRPEVTRRLAGAPEGADRRRAPFPARQAVQRTRLRL PLLPTTTIGSFPQTPAIRAARAAHRRGALDDTEYQARMRAEIAHAVRTQEALGLDVLV HGEAERNDMVEYFGEQLDGFAFTQNGWVQSYGSRCVKPPVLYGDVARPRPMTVDWTVY AQSLTPRPMKGMLTGPVTILQWSFVRDDQPRSRTCEQIAWAIRDEVADLERAGIGIVQ IDEPAIREGLPLRRAHWKPYLDWATRAFRIAACGVGDATQIHTHMCYSEFNDILPGIA AMDADVITIETSRSGMELLQGFGTFKYPNEIGPGVYDIHSPRVPGVDEMLRLLRKAAE VVPPGNLWVNPDCGLKTRAWPETEAALRNMVQAAGALRAEHAGAGS" misc_feature complement(1951731..1954031) /locus_tag="Alide_1896" /note="5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional; Region: PRK05222" /db_xref="CDD:179966" misc_feature complement(1952910..1954028) /locus_tag="Alide_1896" /note="N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by...; Region: CIMS_N_terminal_like; cd03312" /db_xref="CDD:48147" misc_feature complement(order(1953615..1953617,1953621..1953623, 1953636..1953638,1953978..1953980,1953987..1953989)) /locus_tag="Alide_1896" /note="THF binding site; other site" /db_xref="CDD:48147" misc_feature complement(1951731..1952675) /locus_tag="Alide_1896" /note="C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by...; Region: CIMS_C_terminal_like; cd03311" /db_xref="CDD:48146" misc_feature complement(order(1951785..1951790,1952037..1952039, 1952043..1952045,1952169..1952171,1952175..1952177, 1952496..1952498,1952514..1952516,1952667..1952675)) /locus_tag="Alide_1896" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:48146" misc_feature complement(order(1952163..1952165,1952283..1952285, 1952415..1952423)) /locus_tag="Alide_1896" /note="THF binding site; other site" /db_xref="CDD:48146" misc_feature complement(order(1951788..1951790,1951971..1951973, 1952037..1952039,1952043..1952045)) /locus_tag="Alide_1896" /note="zinc-binding site [ion binding]; other site" /db_xref="CDD:48146" gene 1954155..1955081 /locus_tag="Alide_1897" /db_xref="GeneID:10103947" CDS 1954155..1955081 /locus_tag="Alide_1897" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_1631 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126529.1" /db_xref="GI:319762592" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103947" /translation="MIQSILEIRHLRTLQALRDSGSLVRAAQLLNLTQSALSHQIKLL EDRYGTPLFERKSVPPQFSATGTRLLQLADAVLPQVEAAERDVARLSQGQGGQLRIAV ECHTCFDWLMPAMDAFRARWPEVELDIVSGFHADPVGLLHQGRADLAIVSEVDAQEQG VDYHPLFGFEIRALLANTHALLAKPYLVAQDFADQTVITYPVPDEMLDLVRQVLEPAG VRPPRRTTELTVAMLQLVASGRGVAALPLWAVQGYLDRGYVAARPIGTRGLRGELHAA CLPQLSSRPFLQDFVRVTRETSFVTLKGVELL" misc_feature 1954167..1955042 /locus_tag="Alide_1897" /note="DNA-binding transcriptional regulator MetR; Provisional; Region: PRK15421" /db_xref="CDD:185319" misc_feature 1954176..1954352 /locus_tag="Alide_1897" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1954443..1955030 /locus_tag="Alide_1897" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold; Region: PBP2_MetR; cd08441" /db_xref="CDD:176132" misc_feature order(1954488..1954493,1954497..1954502,1954509..1954511, 1954521..1954523,1954527..1954547,1954821..1954838, 1954854..1954859,1954863..1954868) /locus_tag="Alide_1897" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176132" gene 1955197..1955364 /locus_tag="Alide_1898" /db_xref="GeneID:10103948" CDS 1955197..1955364 /locus_tag="Alide_1898" /inference="similar to AA sequence:KEGG:Daci_3074" /note="KEGG: dac:Daci_3074 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126530.1" /db_xref="GI:319762593" /db_xref="GeneID:10103948" /translation="MAASLAIHSRLHVALRIAAAVLGDYAFCWGFVARSLPRVWLVLA GAASLVQMGLA" gene 1955380..1957371 /locus_tag="Alide_1899" /pseudo /db_xref="GeneID:10103949" gene complement(1957390..1957911) /locus_tag="Alide_1900" /db_xref="GeneID:10103950" CDS complement(1957390..1957911) /locus_tag="Alide_1900" /inference="similar to AA sequence:KEGG:Daci_0667" /note="KEGG: dac:Daci_0667 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126531.1" /db_xref="GI:319762594" /db_xref="GeneID:10103950" /translation="MMMLRHHTLALALVLALAGCASHPPANPPSGTVSVTHADPAGFS EARNAPQESERARQAWIDALSQHLAERAARALPEGERLEVHITNIQRAGGFEPWRGPQ ATQLRMARDIYPPRIALEFKRLAPDGHVLETGSRTLRDTAFMMRPDMYPSDPLRHEKA LLDDWVRKELGGR" sig_peptide complement(1957795..1957911) /locus_tag="Alide_1900" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.442 at residue 39" misc_feature complement(1957405..1957821) /locus_tag="Alide_1900" /note="Protein of unknown function (DUF3016); Region: DUF3016; pfam11454" /db_xref="CDD:151893" gene complement(1958018..1958878) /locus_tag="Alide_1901" /db_xref="GeneID:10103951" CDS complement(1958018..1958878) /locus_tag="Alide_1901" /inference="protein motif:PFAM:PF00463" /note="PFAM: isocitrate lyase and phosphorylmutase; KEGG: dac:Daci_3579 PEP phosphonomutase" /codon_start=1 /transl_table=11 /product="isocitrate lyase and phosphorylmutase" /protein_id="YP_004126532.1" /db_xref="GI:319762595" /db_xref="GO:0003824" /db_xref="InterPro:IPR000918" /db_xref="GeneID:10103951" /translation="MNTKQRLKQLVEARNGLIVPGAFNALSARVIADLGFQAIYVTGA GVTNMWFGMPDQGFMGLHEIAEHTARIRDAVDVPLIVDADTGFGNALNVVHTVRTLER AGADCIQLEDQVTPKRCGHFAGKEVISAEEAVGKIKAAADARRDPGFLIMARTDAAAT HGFEAAVERAQKFAEAGADILFVEAVTRAEEVRALPQRLAKPQLMNMVIGGKTPIFNA EQLGELGYGIVLYANAALQGAVAGMQKALTVLRDEKEVQESSGLVTPFAERQLLVGKP AWDALEKRYG" misc_feature complement(1958024..1958866) /locus_tag="Alide_1901" /note="PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]; Region: PrpB; COG2513" /db_xref="CDD:32583" misc_feature complement(1958138..1958860) /locus_tag="Alide_1901" /note="Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377" /db_xref="CDD:119340" misc_feature complement(order(1958138..1958143,1958147..1958155, 1958159..1958167,1958453..1958455,1958462..1958467, 1958474..1958476,1958483..1958488,1958573..1958575, 1958582..1958584,1958594..1958599,1958615..1958617, 1958657..1958662,1958669..1958674,1958678..1958683, 1958690..1958695,1958699..1958710,1958717..1958722, 1958732..1958737,1958747..1958749,1958768..1958776, 1958780..1958782,1958789..1958794,1958798..1958812, 1958816..1958827,1958831..1958833,1958852..1958854)) /locus_tag="Alide_1901" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:119340" misc_feature complement(order(1958183..1958185,1958255..1958257, 1958261..1958263,1958327..1958329,1958417..1958419, 1958546..1958548,1958627..1958629,1958633..1958635, 1958714..1958716,1958747..1958755,1958759..1958761)) /locus_tag="Alide_1901" /note="active site" /db_xref="CDD:119340" misc_feature complement(order(1958546..1958548,1958627..1958629, 1958633..1958635,1958714..1958716)) /locus_tag="Alide_1901" /note="Mg2+/Mn2+ binding site [ion binding]; other site" /db_xref="CDD:119340" gene complement(1959040..1960203) /locus_tag="Alide_1902" /db_xref="GeneID:10103952" CDS complement(1959040..1960203) /locus_tag="Alide_1902" /inference="protein motif:TFAM:TIGR02334" /note="KEGG: dac:Daci_3586 AcnD-accessory protein PrpF; TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453" /codon_start=1 /transl_table=11 /product="acnd-accessory protein prpf" /protein_id="YP_004126533.1" /db_xref="GI:319762596" /db_xref="InterPro:IPR007400" /db_xref="InterPro:IPR012709" /db_xref="GeneID:10103952" /translation="MSNSPQTRIPATYMRGGTSKGVFFNAKDLPPPGPQRDAILLRVL GSPDPYGKQIDGLGNASSSTSKAVILSRSTRPGHDVDYLFGQVSIDQPFVDWSGNCGN LSAAVGPCAIHLGLIDPARIPIHGNVTVRIWQANIGKTIVAHVPIAGGQVQETGDFEL DGVAFPAAEVPLEFIEPSDDSGAMFPTGNVMDTLEVPGVGTFQATLINAGIPTIFLNA KDVGCTGTELQGDINEDKAALARFEAIRAHGAVRMGLIHDVAEAAQRQHTPKIVFIAP PASYTASSGKRIAAGDIDLLARALSMGKLHHAMMGTAAVAIGTAAAIPGTLVHLAAGG GTRNAVRFGHPSGTLRVGAEAAQANGQWQVTKALMSRSARILMEGWVRVPTPP" misc_feature complement(1959046..1960191) /locus_tag="Alide_1902" /note="probable AcnD-accessory protein PrpF; Region: prpF; TIGR02334" /db_xref="CDD:131387" gene complement(1960207..1962834) /locus_tag="Alide_1903" /db_xref="GeneID:10103953" CDS complement(1960207..1962834) /locus_tag="Alide_1903" /inference="protein motif:TFAM:TIGR02333" /note="KEGG: dia:Dtpsy_2080 aconitate hydratase; TIGRFAM: 2-methylisocitrate dehydratase, Fe/S-dependent; PFAM: aconitate hydratase domain-containing protein" /codon_start=1 /transl_table=11 /product="2-methylisocitrate dehydratase, fe/s-dependent" /protein_id="YP_004126534.1" /db_xref="GI:319762597" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR001030" /db_xref="InterPro:IPR012708" /db_xref="GeneID:10103953" /translation="MTMNIRYRKRLPGTALDYFDAREAVEALAPGAWARLPYTTRVHA ENLVRRADPAQLNDYLRQLIGRKREIDFPWYPVRVVCHDILGQTALVDLAGLRDAIAK EGGDPAAVNPVVPVQLIVDHSLAVECGGFDPDAFAKNRAIEDRRNEDRFHFIEWTKKA FANVDVIPAGNGIMHQINLEKMSPVVYVQDGVAFPDTCVGTDSHTPHVDALGVIAVGV GGLEAENVMLGRASWMRLPEIVGIKLTGRRQPGITATDMALALTEFLRQEKVVGAYVE FFGEGADSLSIGDRATISNMCPEYGATAALFTIDPQTIEYLRLTDRSPEQVRLVETYA RQAGFWHTDLQTAQYERVLAFDLSTVVRNMAGPSNPHRRLPTAALAERGIAAPWTEEP GRMPDGAVIIAAITSCTNTSNPRNVIAAALLARNASRLGLSRKPWVKTSLAPGSKAVE LYLKEAGLLGALEKLGFGIVAFACTTCNGMSGALDPAIQQEIIERDLYATAVLSGNRN FDGRIHPYARQAFLASPPLVVAYAIAGTVRFDIERDVFAVVDGKEIRLKDLWPSDEEI DAIVARAVKPEQFRKVYEPMFAIPARDDGARVSPQYGWRPQSTYIRRPPYWDTEGVGA LAANPRTLKGMRPLAILPDNITTDHLSPSNAILPDSAAGEYLARMGLPEEDFNSYATH RGDHLTAMRATFANPQLVNEMAGRKGSLARIEPEGQVVRMWEAIETYLNRRQPLIIIA GADYGQGSSRDWAAKGVRLAGVEVVVAEGFERIHRTNLIGMGVLPLEFQSGTTRLTLQ LDGTETYDVEGALTPRATLTLVIRRKNGELACVPMICRLDTAEEVSVYEAGGVLQRFA QDFLAKSASSALYKSAISY" misc_feature complement(1960258..1962825) /locus_tag="Alide_1903" /note="2-methylisocitrate dehydratase, Fe/S-dependent; Region: 2met_isocit_dHY; TIGR02333" /db_xref="CDD:131386" misc_feature complement(1961224..1962603) /locus_tag="Alide_1903" /note="Aconitase A catalytic domain; Region: AcnA_IRP; cd01586" /db_xref="CDD:153136" misc_feature complement(order(1961299..1961301,1961314..1961316, 1961401..1961403,1962226..1962231,1962580..1962582, 1962589..1962591)) /locus_tag="Alide_1903" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153136" misc_feature complement(order(1961317..1961319,1961401..1961406, 1961413..1961415,1961611..1961613,1962223..1962225)) /locus_tag="Alide_1903" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153136" misc_feature complement(1960408..1960917) /locus_tag="Alide_1903" /note="Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme...; Region: Aconitase_swivel; cl00215" /db_xref="CDD:185833" misc_feature complement(1960585..1960593) /locus_tag="Alide_1903" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73200" gene complement(1962854..1964014) /locus_tag="Alide_1904" /db_xref="GeneID:10103954" CDS complement(1962854..1964014) /locus_tag="Alide_1904" /EC_number="2.3.3.5" /inference="protein motif:TFAM:TIGR01800" /note="TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: ajs:Ajs_1635 methylcitrate synthase; PFAM: Citrate synthase" /codon_start=1 /transl_table=11 /product="2-methylcitrate synthase/citrate synthase ii" /protein_id="YP_004126535.1" /db_xref="GI:319762598" /db_xref="GO:0003871" /db_xref="InterPro:IPR002020" /db_xref="InterPro:IPR011278" /db_xref="InterPro:IPR019810" /db_xref="GeneID:10103954" /translation="MTATTTLTPPPKAKKSVALSGVTAGNTALCTVGRTGNDLHYRGY DILDIAEVCEFEEIAHLLVHGKLPTRAELKTYKAKLKALRGLPGSVKTALEQLPAASH PMDVMRTGVSALGCALPEKDDHNIPGARDIADRLMASLGSMLLYWYHFSNSGRRIEVE TQDDSIGAHFLNLLHGDKPGAGWERAMHTSLNLYAEHEFNASTFTARVIAGTGSDMYS AISGAIGALRGPKHGGANEVAFEVQKRYDTPDEAEADIRRRVEAKEVVIGFGHPVYTV SDPRNVIIKGVARRLSIDAGSTKMYDIAERLESVMWEVKKMFPNLDWFSAVSYHMMQV PTAMFTPLFVIARTSGWAAHIIEQRQDNKIIRPSANYVGPEDQAFVPIEQRR" misc_feature complement(1962860..1963969) /locus_tag="Alide_1904" /note="Citrate synthase [Energy production and conversion]; Region: GltA; COG0372" /db_xref="CDD:30721" misc_feature complement(1962869..1963966) /locus_tag="Alide_1904" /note="Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (...; Region: Ec2MCS_like_1; cd06117" /db_xref="CDD:99870" misc_feature complement(order(1962896..1962928,1963199..1963201, 1963322..1963333,1963337..1963342,1963361..1963363, 1963370..1963381,1963388..1963390,1963400..1963405, 1963412..1963426,1963535..1963537,1963679..1963681, 1963688..1963690,1963700..1963702,1963712..1963714, 1963736..1963741,1963748..1963753,1963937..1963951, 1963958..1963966)) /locus_tag="Alide_1904" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99870" misc_feature complement(order(1962917..1962919,1962926..1962928, 1962974..1962976,1962986..1962988,1963049..1963051, 1963055..1963057,1963064..1963066,1963070..1963072, 1963175..1963177,1963190..1963192,1963199..1963222, 1963301..1963303,1963310..1963312,1963316..1963324, 1963415..1963417,1963424..1963426,1963955..1963957)) /locus_tag="Alide_1904" /note="active site" /db_xref="CDD:99870" misc_feature complement(order(1962974..1962976,1963055..1963057, 1963175..1963177,1963199..1963213,1963217..1963222, 1963319..1963324,1963415..1963417,1963424..1963426, 1963955..1963957)) /locus_tag="Alide_1904" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99870" misc_feature complement(order(1962917..1962919,1962974..1962976, 1962986..1962988,1963049..1963051,1963175..1963177, 1963202..1963204,1963316..1963321,1963415..1963417, 1963424..1963426)) /locus_tag="Alide_1904" /note="oxalacetate/citrate binding site [chemical binding]; other site" /db_xref="CDD:99870" misc_feature complement(order(1962926..1962928,1963049..1963051, 1963055..1963057,1963064..1963066,1963070..1963072, 1963190..1963192,1963199..1963201,1963205..1963222, 1963301..1963303,1963310..1963312,1963319..1963324)) /locus_tag="Alide_1904" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99870" misc_feature complement(order(1963049..1963051,1963202..1963204, 1963319..1963321)) /locus_tag="Alide_1904" /note="catalytic triad [active]" /db_xref="CDD:99870" gene complement(1964011..1964406) /locus_tag="Alide_1905" /db_xref="GeneID:10103955" CDS complement(1964011..1964406) /locus_tag="Alide_1905" /inference="protein motif:PFAM:PF03061" /note="KEGG: dia:Dtpsy_2078 thioesterase superfamily protein; manually curated; PFAM: thioesterase superfamily protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004126536.1" /db_xref="GI:319762599" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10103955" /translation="MTRPPGTVETKDMVFPQDANHHGTLFAGQGLQRLARAALVAARE AAGCEVVMAAVTGVQFLAPVPVGRALVLRAWIGRMGSSSLTVCVHGLAEAPGCAPELV LQGVFELVAVDAKGRPRAIAAAYLKPETT" misc_feature complement(1964044..1964406) /locus_tag="Alide_1905" /note="Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain...; Region: BFIT_BACH; cd03442" /db_xref="CDD:48037" gene 1964509..1965969 /locus_tag="Alide_1906" /db_xref="GeneID:10103956" CDS 1964509..1965969 /locus_tag="Alide_1906" /inference="protein motif:PFAM:PF09856" /note="KEGG: ajs:Ajs_1637 XRE family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126537.1" /db_xref="GI:319762600" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR010359" /db_xref="InterPro:IPR018653" /db_xref="InterPro:IPR022272" /db_xref="GeneID:10103956" /translation="MRKTFMGVRLRRLREERGLTQVALARALDISASYLNQIEQNQRP LTVPVLLKINAVFGVDVQRFSDDDEARLIAGLRDVLADMPAGAAADAVSLAEIRELAA SMPAVARALLALHRGQREAHERLEALSAHYGDERGGAAGAAHAPPMAYEEVRDFFFAR HNHIAELDDAAERLAGQWRLAPGASEAGLRQRLERAHGVRVSLPAEGLPGHGQDGAGE AMQRSFDAAARVLYLSPALRPAQRAFQMATQLAFLEVPQELQRIVDAAQLSGDAARAL ARIGLANYFAGALLLPYAPFLQSAEALHYDIERLGQRWGVGFETVCHRLSTLQRPGAR GVPFFFIRVDRAGNISKRQSATHFHFSKIGGTCPLWNVYEAFAQPGRIVRQLARMPDG RAYLWVARTVARSTGGWGAPGKTFSVALGCDVQHAPQLVYARGLDLADPDAPVPIGMG CKVCERTACPQRAFPPMGRALEVNENRSSLVPYRVA" misc_feature 1964560..1964715 /locus_tag="Alide_1906" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" misc_feature 1964947..1965966 /locus_tag="Alide_1906" /note="Predicted transcriptional regulator [General function prediction only]; Region: COG3800" /db_xref="CDD:33594" misc_feature 1965172..1965486 /locus_tag="Alide_1906" /note="Domain of unknown function (DUF955); Region: DUF955; cl01076" /db_xref="CDD:154183" misc_feature 1965487..1965957 /locus_tag="Alide_1906" /note="Predicted transcriptional regulator (DUF2083); Region: DUF2083; pfam09856" /db_xref="CDD:150518" gene complement(1966081..1966989) /locus_tag="Alide_1907" /db_xref="GeneID:10103957" CDS complement(1966081..1966989) /locus_tag="Alide_1907" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B2225 transcription regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126538.1" /db_xref="GI:319762601" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10103957" /translation="MAGNPINPARIDFTTLRLFCAVAQTGSITKGAERCHLALSAASR RMSDFEAASKACLMERTAQGIRLTPAGHVALQHAMRLFQGFELFSNELSEYSSGSRGH VRLWANMSALVEFLPAALAGFLQRYPETRVEVEEQLTGDIVRAVVEGMADVGIFVAGA PTHGLNVRPYRVDELVVLCSQAHPLAAHDRIGFRHCLAHDFVGLNRGSSLLNTITTAA QEAGFPLRLRVQVRSFDAMCEMIAANLGIGVLPLGTCARKLGPWGLKVVHLDDAWARR QLLIATSANRTLSGSASLLVEHLAKA" misc_feature complement(1966084..1966959) /locus_tag="Alide_1907" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1966774..1966944) /locus_tag="Alide_1907" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1966093..1966686) /locus_tag="Alide_1907" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(1966261..1966266,1966270..1966275, 1966291..1966308,1966582..1966602,1966606..1966608, 1966618..1966620,1966627..1966632,1966636..1966641)) /locus_tag="Alide_1907" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 1967119..1967502 /locus_tag="Alide_1908" /db_xref="GeneID:10103958" CDS 1967119..1967502 /locus_tag="Alide_1908" /inference="protein motif:PFAM:PF00903" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B2224 metallothiol transferase" /codon_start=1 /transl_table=11 /product="glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004126539.1" /db_xref="GI:319762602" /db_xref="InterPro:IPR004360" /db_xref="GeneID:10103958" /translation="MIHHLDHLVLTTADEQACIDFYVGLLGMTLETFGQGRKAFKFGG QKINLHVKGSEFEPKAHLPVPGALDLCFIAARPLDEVIARIRERGVRIVEGPVRRTGA SYPLRSIYLRDPDLNLIEISERAEA" misc_feature 1967122..1967484 /locus_tag="Alide_1908" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_2; cd07253" /db_xref="CDD:176676" misc_feature order(1967122..1967145,1967194..1967199,1967242..1967256, 1967308..1967343,1967356..1967361,1967368..1967370, 1967395..1967397,1967416..1967427,1967452..1967454, 1967461..1967466,1967470..1967472,1967476..1967478) /locus_tag="Alide_1908" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176676" misc_feature order(1967137..1967139,1967323..1967325,1967476..1967478) /locus_tag="Alide_1908" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176676" gene 1967552..1968619 /locus_tag="Alide_1909" /db_xref="GeneID:10103959" CDS 1967552..1968619 /locus_tag="Alide_1909" /inference="similar to AA sequence:KEGG:Hsero_2301" /note="KEGG: hse:Hsero_2301 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126540.1" /db_xref="GI:319762603" /db_xref="GeneID:10103959" /translation="MNRSMKSAAMAASLLALLGCAGAPIAPVAGQGPVAVAEIGSFHT GGRSVTLSGLPKKEVRFTPTSPPTLLDPNGEFEVEQMYTQYVKLAPQSRRARYPMLMW HGGGLTGVTWETKPDGQPGWQMYFVAAGHDVYVSDAVERGRASWARYPEIFKSEPVFR TKKEGWELFRIGPADSYDSAASRHAYPDTQFPIAAFDQFMKQGVPRWVTNDEPTLRAY DALVNKVCPCVITVHSQGSTFAYTLASRYPDKIKAVVGVEPSGALDPDKVDVAPLARV PLLFVWGDKIRETPRWQSIQAPMKKMIAAVKARGGQVDEIDLPAQGIRGNSHMIMMDR NSDQVAALVQDWLVRRGLATR" sig_peptide 1967552..1967644 /locus_tag="Alide_1909" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.509 at residue 31" misc_feature <1968251..>1968472 /locus_tag="Alide_1909" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(1968626..1969072) /locus_tag="Alide_1910" /db_xref="GeneID:10103960" CDS complement(1968626..1969072) /locus_tag="Alide_1910" /inference="protein motif:PFAM:PF01479" /note="KEGG: ajs:Ajs_1639 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein" /codon_start=1 /transl_table=11 /product="RNA-binding s4 domain protein" /protein_id="YP_004126541.1" /db_xref="GI:319762604" /db_xref="GO:0003723" /db_xref="InterPro:IPR002942" /db_xref="GeneID:10103960" /translation="MTTPPDSMRLDKWLWCARFYKTRSLAVEEIGKGRVTVNGQAAKA ARELRAGDTVALRQGQVPRTVVVRGLSNFRGPAPVAQQLYEETPESIAERARAAEARR LAPEPAASLREGRPTKRDRRSMDDLRHGWGDRWSASLDDDGPPGKS" misc_feature complement(1968875..1969051) /locus_tag="Alide_1910" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature complement(order(1968926..1968928,1968932..1968952, 1968971..1968973,1968977..1968982,1968989..1968994, 1968998..1969003,1969007..1969012,1969046..1969048)) /locus_tag="Alide_1910" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" gene complement(1969095..1970498) /locus_tag="Alide_1911" /db_xref="GeneID:10103961" CDS complement(1969095..1970498) /locus_tag="Alide_1911" /inference="protein motif:PFAM:PF08521" /note="KEGG: dia:Dtpsy_2074 histidine kinase; PFAM: Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="two-component sensor kinase domain-containing protein" /protein_id="YP_004126542.1" /db_xref="GI:319762605" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013727" /db_xref="GeneID:10103961" /translation="MTRQRSLRRQLLLGILLPTLLFIGLNTYSLYRQTLGALNTAYDR TLLASAKTISEQIDVRGYDERAELRVIVPYAALEAFEADNQSRMYYRVSNLRGELVSG FGELPMWRGSIAPRPPYAALVDFYDASFRGRPVRVAALLQPVASPQGRGMAVIQVAET LELRHAAALQILRDTLARQALLVALVAAIVVLVVQRATRPVRQLSADLQARAEGDLSP IAAPAAPRELQPLIDATNAVMRRLSHLLEHQKRFVRDASHQLRTPLAVLKTQVQSALR GDMPPGQALHEIGDTVERATQLANQMLALAKVEQLRQQGELPTMRLDEVLREVALDLS PLIAQGDLDFGIATDAAPIRAHAWMLRELCRNLLHNAIRHAPPATELAVTLRAQGTHA ELTIADAGPGIDDELAARLFEPFSAGDVRKGSGLGLAICQEIVQALGGSIALSNRRQG ARVLGLDAVVRLPLAPA" misc_feature complement(1969983..1970423) /locus_tag="Alide_1911" /note="Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521" /db_xref="CDD:149540" misc_feature complement(1969578..1969763) /locus_tag="Alide_1911" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(1969593..1969595,1969605..1969607, 1969614..1969616,1969626..1969628,1969635..1969637, 1969647..1969649,1969689..1969691,1969698..1969700, 1969710..1969712,1969719..1969721,1969731..1969733, 1969743..1969745)) /locus_tag="Alide_1911" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(1969725..1969727) /locus_tag="Alide_1911" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(1969140..1969421) /locus_tag="Alide_1911" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1969140..1969142,1969146..1969151, 1969164..1969166,1969167..1969169,1969215..1969226, 1969290..1969295,1969299..1969301,1969305..1969307, 1969311..1969313,1969380..1969382,1969389..1969391, 1969401..1969403)) /locus_tag="Alide_1911" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1969389..1969391) /locus_tag="Alide_1911" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1969218..1969220,1969224..1969226, 1969293..1969295,1969299..1969301)) /locus_tag="Alide_1911" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(1970495..1971178) /locus_tag="Alide_1912" /db_xref="GeneID:10103962" CDS complement(1970495..1971178) /locus_tag="Alide_1912" /inference="protein motif:PFAM:PF00072" /note="KEGG: ajs:Ajs_1641 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004126543.1" /db_xref="GI:319762606" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10103962" /translation="MQLLLVEDDATMQATLQRSLARRGMAVTALADGRAALAEWRAHP PDAVVLDLTLPGLDGLQVLEQARAGGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKP FDLDELEARLRALVRRSGDAMEAKSAASALAMGAISYEKESGIIYAHGAPMDLTPREL ALLRALLAQPGHAVTKERLYELVFPGQSEVQYEAIEVVAYRLRKKLAGTGVVLMTLRG LGYLLKPEA" misc_feature complement(1970507..1971178) /locus_tag="Alide_1912" /note="transcriptional regulatory protein TctD; Provisional; Region: PRK15479" /db_xref="CDD:185376" misc_feature complement(1970870..1971169) /locus_tag="Alide_1912" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1970873..1970878,1970885..1970887, 1970942..1970944,1971002..1971004,1971026..1971028, 1971155..1971160)) /locus_tag="Alide_1912" /note="active site" /db_xref="CDD:29071" misc_feature complement(1971026..1971028) /locus_tag="Alide_1912" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1971002..1971010,1971014..1971019)) /locus_tag="Alide_1912" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1970870..1970878) /locus_tag="Alide_1912" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1970510..1970755) /locus_tag="Alide_1912" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(1970519..1970521,1970534..1970536, 1970561..1970566,1970588..1970590,1970597..1970599, 1970651..1970656,1970711..1970713)) /locus_tag="Alide_1912" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 1971321..1972280 /locus_tag="Alide_1913" /db_xref="GeneID:10103963" CDS 1971321..1972280 /locus_tag="Alide_1913" /inference="similar to AA sequence:KEGG:Dtpsy_2072" /note="KEGG: dia:Dtpsy_2072 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126544.1" /db_xref="GI:319762607" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10103963" /translation="MRRDTFLKSLAALAAAGSLPLSAQAAVAIKMMLPANPGGGWDTT GRALGKALQDAGVASSVTYDNKGGAAGAIGLAQFINGSKGDPNALMVMGAVMLGGIIT GKPPVNLSQATPIARLTSEYNVFVLPANSPFKTMADVVAQLKKDPGSVKWGGGSRGST EHIAAAMIAREVGVDPAKINYVAFRGGGEATAAILGGNVTVGGSGYSEFAEYITAGKM KPIGVTSPQRLKGLNIPTLKEQGINVEIGNWRGVYGAPGITAEQRKALTAMVEKAVKS KAWAEAIQKNDWTPAWLAGDEFANFVDQEFASLRATMVKSGMV" sig_peptide 1971321..1971398 /locus_tag="Alide_1913" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.982 at residue 26" misc_feature 1971402..1972277 /locus_tag="Alide_1913" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1971453..1972271 /locus_tag="Alide_1913" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1972417..1972971 /locus_tag="Alide_1914" /db_xref="GeneID:10103964" CDS 1972417..1972971 /locus_tag="Alide_1914" /inference="similar to AA sequence:KEGG:Dtpsy_2071" /note="KEGG: dia:Dtpsy_2071 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126545.1" /db_xref="GI:319762608" /db_xref="GeneID:10103964" /translation="MSELAPSSDPAAADAGSVPSPFWQAAVGAAVVLVAAGMAFGALQ IPGDAGYGGVGPNFLPWVCAAVLGLCGVLLIREALTGGYRQAADPGGAPRAALGPFAW VTAGLLLNAALIVDLGFILGCTLCYALAVQGLRRANGQTGRLAPRALAVDVLTGLAIS APVFWLFTQFLAINLPGLTNTGWL" misc_feature 1972567..1972944 /locus_tag="Alide_1914" /note="Tripartite tricarboxylate transporter TctB family; Region: TctB; pfam07331" /db_xref="CDD:191726" gene 1972971..1974500 /locus_tag="Alide_1915" /db_xref="GeneID:10103965" CDS 1972971..1974500 /locus_tag="Alide_1915" /inference="protein motif:PFAM:PF01970" /note="PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126546.1" /db_xref="GI:319762609" /db_xref="InterPro:IPR002823" /db_xref="GeneID:10103965" /translation="MEIFDALMAGFATAISPANLLWALVGCALGTAVGVLPGIGPAVA VAMLLPITSKVDMTASMIFFAGIYYGAMYGGSTTSILLNTPGETASMVTAMEGNKMAK SGRAGAALATAAIGSFVAGTVATVVVTLFAPSVAEFAVKLGPPEYFMLMVLAFTTVSA VLGQSSLRGMTALFIGLALGCVGMDQISGAARYTGGKMELLDGIDIVLVAVGLFAVAE VLYAALYEGRVEESQNKFTRVYMTARDWKRSVPAWLRGTLIGTPFGCIPAGGTEIPTF LSYATEKKLAKGEDKAEFGTKGAIEGVAGPEAANNATVTAALIPLLTLGIPTSNTTAV LLGAFQNYGINPGPQLFSSSAALVWALIASLYIGNIMLLVLNLPMVGLWVKLLKIPRP QLYAGILIFATVGAYGMRQSTFDLFLLYAIGLLGVLMRRFDFPTAPVVVGMILGPLAE AQMRNAVSIGEGSWWIFLQRPMSLALIVIVLAVLIVPRVLRRWAERNLARHHQSADDI V" misc_feature 1972971..1974389 /locus_tag="Alide_1915" /note="Tripartite tricarboxylate transporter TctA family; Region: TctA; cl00772" /db_xref="CDD:153985" gene 1974566..1976755 /locus_tag="Alide_1916" /db_xref="GeneID:10103966" CDS 1974566..1976755 /locus_tag="Alide_1916" /EC_number="3.1.1.22" /inference="protein motif:PRIAM:3.1.1.22" /note="KEGG: dia:Dtpsy_2060 D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; PFAM: D-(-)-3-hydroxybutyrate oligomer hydrolase, putative" /codon_start=1 /transl_table=11 /product="hydroxybutyrate-dimer hydrolase" /protein_id="YP_004126547.1" /db_xref="GI:319762610" /db_xref="InterPro:IPR016582" /db_xref="GeneID:10103966" /translation="MRSNERMGLARWAMAALAGVALAACGGGSSRPSNDLPQGIKEIS ATVYPATVAGTGATAQTQDLLTGGIGKTGLGAAAAPAYADPANPTAAELRRNALYSNY RGILDPMPGGGYGLLYGPNVTADGRVTAGEGLIPGREYVAVLDDGSGRKQTVIAVQVP DSFSASNPCIVLGASSGSRGVYGAIGTAGEWGLKKGCAVALTDAGKGVGLHNLADDTV NKIDGTRATRTAAGALGFFAAALSDAARAAYDAAFPNRIAIKHAHSQQNPEKDWGSDT LAAGRYALYVLNARYGTVANPVPFTKANTLVIAGSASNGGAASLRAAEQDGDGLIDGV VASEPVTEMPATAGYGIRFGGASVTGYGRTLAEYTTWGNIYQPCAALASAAALTEVSY YNFIGLAGMTARATARCDGLAAKGLVSGATTAERAADALAKLRAYGWTEDNDTMHNAH YGLGNGPILSAMYPMAYGRFGADANLCNTSFAAASPLTGDVAAAAPAALAQSFATANG TANGAPATVIYNDSQGGAKAWQFAVSASTGVADFGLDNALCQHALVSGRNPVTGAALT AASTPTKADSDKVRAGIAEVLHSANLRGKPAIIVAGRSDALVPVNNNARAYAALNRTI EGAASKLRYIEVVNGQHFDAFLPLPGFDTRFVPLHPYFNQAMDAMWAHLKSGAQLPAS QVVRTTPRGGAPGAAPAITAANVPPFVATPAAADQIGFSGTSITVPR" misc_feature 1974839..1976749 /locus_tag="Alide_1916" /note="3HB-oligomer hydrolase (3HBOH); Region: 3HBOH; pfam10605" /db_xref="CDD:151132" gene complement(1977073..1977660) /locus_tag="Alide_1917" /db_xref="GeneID:10103967" CDS complement(1977073..1977660) /locus_tag="Alide_1917" /inference="similar to AA sequence:KEGG:CtCNB1_3704" /note="KEGG: ctt:CtCNB1_3704 lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_004126548.1" /db_xref="GI:319762611" /db_xref="GeneID:10103967" /translation="MNQKISLRTAATAAMVAAASLSMMACTATKPDTQAAPRADSTSL DTRVNAALERLYQTAPGSRDQVRRAKGVLVFPSVIGGSFIVGVEHGRGVLRVQGRDRG QYSTTAASVGWQAGGQSRAVIYVFNTQEALDKFLASDGWSAGVDATVAVGRVGASGSV DTNTAETPVTGYVLNNLGLEAGISLQGSKITRIRD" sig_peptide complement(1977577..1977660) /locus_tag="Alide_1917" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.826 at residue 28" misc_feature complement(1977076..1977585) /locus_tag="Alide_1917" /note="Family of unknown function (DUF500); Region: DUF500; cl01109" /db_xref="CDD:194038" gene complement(1977845..1978012) /locus_tag="Alide_1918" /db_xref="GeneID:10103968" CDS complement(1977845..1978012) /locus_tag="Alide_1918" /inference="similar to AA sequence:KEGG:Dtpsy_2056" /note="KEGG: dia:Dtpsy_2056 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126549.1" /db_xref="GI:319762612" /db_xref="GeneID:10103968" /translation="MTRHTTLRLVFWAALAAFLAWDWSSSKPVDLRLEPPLIAAGSGQ AAAGGHCSMPD" sig_peptide complement(1977953..1978012) /locus_tag="Alide_1918" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.618) with cleavage site probability 0.565 at residue 20" gene complement(1978026..1979123) /locus_tag="Alide_1919" /db_xref="GeneID:10103969" CDS complement(1978026..1979123) /locus_tag="Alide_1919" /inference="protein motif:PFAM:PF04143" /note="PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ajs:Ajs_1649 protein of unknown function DUF395, YeeE/YedE" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126550.1" /db_xref="GI:319762613" /db_xref="InterPro:IPR007272" /db_xref="GeneID:10103969" /translation="MKRLPLAAVLAVFTGWLLWSVSARQAALFVVGLGLGAVLAGQRF GFTTGWRMLIEDKDASGVMGQLLLLALAAALAMPLLGHYPELTAALGPPSVSLLVGAF VFGLCMQIADGCGSGTLYKAGLGIPMNAAILPLFALGSFLGSLHLGFWLDLGRSQPVG LVGQFGWERALLITLAALAAVAVAVGWYVRRASAAAGQAPRPLVVRKWMVGAVLLAVL ATLNLVIAGQPWGVVYGFGLWAAKLAQASGAADLAHNWFWSQPGNAARLHETVLMDVT SITNIGILGGALWVSAGKPANARPLNGTQWAVALIAGLALGYSSRLAFGCNVGAMLSG ISTGSIHGWIWVPLAFAGTIFGLRIRRHFGF" sig_peptide complement(1979043..1979123) /locus_tag="Alide_1919" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.599 at residue 27" misc_feature complement(<1978047..>1978283) /locus_tag="Alide_1919" /note="putative inner membrane protein; Provisional; Region: PRK11099" /db_xref="CDD:182961" gene complement(1979218..1980162) /locus_tag="Alide_1920" /db_xref="GeneID:10103970" CDS complement(1979218..1980162) /locus_tag="Alide_1920" /inference="protein motif:PFAM:PF00581" /note="KEGG: dia:Dtpsy_2054 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="YP_004126551.1" /db_xref="GI:319762614" /db_xref="InterPro:IPR001763" /db_xref="GeneID:10103970" /translation="MKKLFAIAVFAAAAHAGWAAQPLLTPAELSAQTAQPTPPRVIDI RDPASYGAQHIPGAVNAPYGKWRGPASNPGELPDTPKLTELVQSLGLTPGTHAVVVST GSDTTDFGAAARVYWTLKLLGLKELSILNGGMKAWSDAKLAQDAAVPQVARSAYQPQI DASLLATRDDVGQHVQLNNAALVDSRPDAFYQGKVRAPAAKLAGTLPGAQQLDFNQWF VPGTTTFVDKATAQKIAAKVKREQGQDMVAFCNTGHWAATDWFGLSEIAGLPGVKLYA GSMVDWTQSKDAPPMANQPSRFEALAYDAKQWWERKTK" sig_peptide complement(1980103..1980162) /locus_tag="Alide_1920" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.902 at residue 20" misc_feature complement(1979296..1980102) /locus_tag="Alide_1920" /note="Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Region: SseA; COG2897" /db_xref="CDD:32722" misc_feature complement(1979743..1980096) /locus_tag="Alide_1920" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125" /db_xref="CDD:193666" misc_feature complement(1979848..1979850) /locus_tag="Alide_1920" /note="active site residue [active]" /db_xref="CDD:29073" misc_feature complement(1979311..1979667) /locus_tag="Alide_1920" /note="Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue; Region: TST_Repeat_2; cd01449" /db_xref="CDD:29080" misc_feature complement(1979413..1979415) /locus_tag="Alide_1920" /note="active site residue [active]" /db_xref="CDD:29080" gene complement(1980277..1981272) /locus_tag="Alide_1921" /db_xref="GeneID:10103971" CDS complement(1980277..1981272) /locus_tag="Alide_1921" /EC_number="4.99.1.1" /inference="protein motif:TFAM:TIGR00109" /note="TIGRFAM: ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; PFAM: ferrochelatase" /codon_start=1 /transl_table=11 /product="ferrochelatase" /protein_id="YP_004126552.1" /db_xref="GI:319762615" /db_xref="GO:0004325" /db_xref="InterPro:IPR001015" /db_xref="InterPro:IPR019772" /db_xref="GeneID:10103971" /translation="MPSPATAILLCNLGTPDAPTAPALRRYLAQFLSDPRVVEIPRAA WLPILHGIILRTRPAQSAAKYQTIWTPDGSPLAVWTNKQAVMLRGWLGEAGAQVQVLP AMRYGRPAIGAQLQALQAEGVKRVLVLPLYPQYSGTTTASVVDDVAAWTRRQRHFPEL RFVNDYHDDPGYVASLAASVRAHWQREGGPADKLVMSFHGIPERNVRLGDPYADQCRT TARLLAEALGLAPEQYQLTFQSRFGKARWLEPYTEPTLVALAQAGTRRVDVMCPGFTG DCLETLEEINQEARHAFLQAGGQEFRYIPCLNDSHAWITALSRIAQRHLAGWPDM" misc_feature complement(1980283..1981272) /locus_tag="Alide_1921" /note="ferrochelatase; Reviewed; Region: hemH; PRK00035" /db_xref="CDD:178811" misc_feature complement(1980766..1981257) /locus_tag="Alide_1921" /note="Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_N; cd03411" /db_xref="CDD:48638" misc_feature complement(order(1980772..1980774,1980778..1980780, 1980862..1980873,1980880..1980882,1981024..1981026, 1981036..1981038,1981069..1981071,1981081..1981083, 1981237..1981239)) /locus_tag="Alide_1921" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48638" misc_feature complement(order(1980856..1980861,1981174..1981182, 1981192..1981194,1981234..1981236)) /locus_tag="Alide_1921" /note="active site" /db_xref="CDD:48638" misc_feature complement(1980349..1980747) /locus_tag="Alide_1921" /note="Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_C; cd00419" /db_xref="CDD:73203" misc_feature complement(order(1980433..1980435,1980532..1980534, 1980661..1980663,1980676..1980678)) /locus_tag="Alide_1921" /note="active site" /db_xref="CDD:73203" misc_feature complement(order(1980349..1980351,1980424..1980426, 1980436..1980438,1980442..1980450,1980454..1980456, 1980616..1980618,1980628..1980630,1980637..1980645)) /locus_tag="Alide_1921" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:73203" gene 1981291..1982016 /locus_tag="Alide_1922" /db_xref="GeneID:10103972" CDS 1981291..1982016 /locus_tag="Alide_1922" /inference="protein motif:TFAM:TIGR01509" /note="KEGG: dac:Daci_2563 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="had-superfamily hydrolase, subfamily ia, variant 3" /protein_id="YP_004126553.1" /db_xref="GI:319762616" /db_xref="GO:0008967" /db_xref="InterPro:IPR005833" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006402" /db_xref="InterPro:IPR006439" /db_xref="GeneID:10103972" /translation="MLHRLMTNAHTLDLPRIRAITLDLDDTLWPVWPAISRAEAALAG WLAAHAPATAALFSDAQALRAIRQRMETLRPDLRHDLSALRRESIRMALAQAGDDPLL AEPAFEFFFAERQRVDLFDDALAALDFMATRWPVVAVSNGNADVHRIGIGRYFKASLS ATQLGVAKPDARIFHAGAQAAGVAPGQVLHVGDDALLDARGALDAGMQAAWLNTVGAD WPHEGAPPHATVPSLSALCRLLA" misc_feature 1981330..1982013 /locus_tag="Alide_1922" /note="Predicted hydrolase (HAD superfamily) [General function prediction only]; Region: COG1011" /db_xref="CDD:31215" misc_feature 1981330..1982010 /locus_tag="Alide_1922" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene complement(1981988..1984744) /locus_tag="Alide_1923" /db_xref="GeneID:10103973" CDS complement(1981988..1984744) /locus_tag="Alide_1923" /inference="protein motif:TFAM:TIGR01494" /note="KEGG: dia:Dtpsy_2050 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="atpase, p-type (transporting), had superfamily, subfamily ic" /protein_id="YP_004126554.1" /db_xref="GI:319762617" /db_xref="GO:0005524" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR004014" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006068" /db_xref="InterPro:IPR006069" /db_xref="InterPro:IPR008250" /db_xref="InterPro:IPR018303" /db_xref="GeneID:10103973" /translation="MRSRMPTTTPTEHRDTPWHALPASAIAERLATDARYGLPHAETA LRLARHGPNRLPAPPRRPAWRRLLAQFHNMLIYVMLASAAITGALGHWIDTGVLLGAV VINAVLGFVQEGKAESALDAIRRMLSPQATVLRGGERQLVAAEQLVPGDIVLLASGDK VPADLRILSAKSLRADEAVLTGESVPSDKSEAAVAEDAPLGDRHCMLYSGTLVAAGTA VGAVAATGTRTELGRIGALLAQAEPGTTPLLSQIARFSRWLAAAILLFVAVTFVIGVL WRGQAPSDMFMMAVALAASAIPEGLPAIMTITLALGVRRMAHHHAIIRHLPAVETLGS VTVICSDKTGTLTCNEMTVQRAVTADRVYEVTGSGYAPQGGFQVGGMNASPAADPVLQ SMARVALLCNDSALNHGAEGWTLTGDPTEGALLAFALKAGLDGAATHAALPRIDAIPF ESEHRFMATLHHDHAGHALILVKGAPERVLDMCSTQSALQHGEQGCAPLDHDYWRRAA NDCAARALRVLAIAAKRVPAQQHALSWDDMEGGFTLLGILGSMDPPRPEAMAAVAECH AAGVRVKMITGDHGETARAIGAQLGIGLERPALTGAEIELMDDGALREVVDSVHVFAR ASPEHKIRLVQALQARGEVVAMTGDGVNDAPALKRADVGVAMGRNGTEAAKDAAAMVL ADDNFATLGAAVREGRGVYDNVRKFILFMLPTNGGEALVVFFAIAFALQLPLTAAQVL WINLVTSGTLGLALAFEPTESDVMRRPPRDPRESLLSGPFIWRVVMVSLLMAGASLGL FLWELSRGSSLETARTMAVCAVVAAEMFYLFNSRHILRSALTREGLLGNPQVLMAIAA CALLQLAFVHAPWLQAVFGSTDLSPGEWLRVLLSGAVVFAAAELEKWAMRRSRSTPAA DTAR" misc_feature complement(1982018..1984744) /locus_tag="Alide_1923" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: MgtA; COG0474" /db_xref="CDD:30822" misc_feature complement(1984472..1984663) /locus_tag="Alide_1923" /note="Cation transporter/ATPase, N-terminus; Region: Cation_ATPase_N; cl02930" /db_xref="CDD:194483" misc_feature complement(1983752..1984456) /locus_tag="Alide_1923" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature complement(<1982753..>1982899) /locus_tag="Alide_1923" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature complement(1982036..1982551) /locus_tag="Alide_1923" /note="Cation transporting ATPase, C-terminus; Region: Cation_ATPase_C; pfam00689" /db_xref="CDD:189671" gene complement(1984923..1985729) /locus_tag="Alide_1924" /db_xref="GeneID:10103974" CDS complement(1984923..1985729) /locus_tag="Alide_1924" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004126555.1" /db_xref="GI:319762618" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10103974" /translation="MYVDVNGARTYCYTGGKPLEPGRPTVVFIHGVLNDHSVWALQSR YLAHNGWNVLAVDLPGHSKSAGEAPASVEQAAGFVVALLDALGIQRAALVGHSWGSLI ALEAAARLGARASHLALVGTAYPMKVSPALIESSLHEPEKALRMVNTFSRSTLAPPLG AGFWVYGAGMALGRRVLRSNPQVNVFHRGFVACDSYAGGEQAIAAIQCPVLFVLGTLD QMTHPKAAQGLIQAARAAGRQVQVAQLPVGHHQMSEAPDETLLALRDFLT" misc_feature complement(<1985529..1985711) /locus_tag="Alide_1924" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature complement(1985058..1985654) /locus_tag="Alide_1924" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene complement(1985729..1987030) /locus_tag="Alide_1925" /db_xref="GeneID:10103975" CDS complement(1985729..1987030) /locus_tag="Alide_1925" /inference="protein motif:TFAM:TIGR01326" /note="KEGG: ajs:Ajs_1656 O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein" /codon_start=1 /transl_table=11 /product="o-acetylhomoserine/o-acetylserine sulfhydrylase" /protein_id="YP_004126556.1" /db_xref="GI:319762619" /db_xref="GO:0005524" /db_xref="InterPro:IPR000277" /db_xref="InterPro:IPR006235" /db_xref="GeneID:10103975" /translation="MPGYTDPGFDTLALHAGARPDPATGARAVPIHLTTSFVFDSSDH AAALFNMERPGHVYSRISNPTNAVLEQRVAALEGGVGAIATASGQAALHLAVCTLMGA GGHIVASTALYGGSQNLLNYTLRRFGIETSFVKPGDLAGWRAAVRPNTRLFFGETVGN PGLEVLDIPAVSQIAHEAGVPLLVDSTLTSPWLIRPLEHGADLVYHSATKFLSGHGTV IGGVLVDGGSFDWEASGRFPELTQAYDGFHGMVFAEESTVGAFLLRARREGLRDFGAC MSPHTAWLILQGIETLPLRMERHMRNTERVVQFLASHPFVARVGHPLLESHPGHQLAQ RLLPRGAGSVFSFDLKGSRGQGKKFIEALKLFSHLANVGDCRSLVIHPASTTHHRLDD EALAAAGIGQGTIRLSIGLEDAGDLIDDLQRALKAAEKAGA" misc_feature complement(1985732..1987030) /locus_tag="Alide_1925" /note="O-acetylhomoserine aminocarboxypropyltransferase; Validated; Region: PRK08134" /db_xref="CDD:181245" misc_feature complement(1985753..1986958) /locus_tag="Alide_1925" /note="CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614" /db_xref="CDD:99738" misc_feature complement(order(1985948..1985950,1986188..1986193, 1986197..1986199,1986230..1986232,1986374..1986376, 1986380..1986382,1986404..1986406,1986668..1986670, 1986677..1986679,1986692..1986694,1986761..1986766, 1986770..1986775,1986851..1986853,1986857..1986859, 1986914..1986919,1986923..1986934)) /locus_tag="Alide_1925" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99738" misc_feature complement(order(1986374..1986376,1986401..1986406, 1986410..1986412,1986476..1986478,1986563..1986565, 1986692..1986694,1986764..1986772)) /locus_tag="Alide_1925" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:99738" misc_feature complement(order(1986401..1986406,1986410..1986412, 1986467..1986469,1986476..1986478,1986692..1986694, 1986764..1986772)) /locus_tag="Alide_1925" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature complement(1986401..1986403) /locus_tag="Alide_1925" /note="catalytic residue [active]" /db_xref="CDD:99738" gene 1987146..1987601 /locus_tag="Alide_1926" /db_xref="GeneID:10103976" CDS 1987146..1987601 /locus_tag="Alide_1926" /inference="protein motif:PFAM:PF00571" /note="KEGG: dia:Dtpsy_2047 CBS domain containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein" /codon_start=1 /transl_table=11 /product="cbs domain containing protein" /protein_id="YP_004126557.1" /db_xref="GI:319762620" /db_xref="InterPro:IPR000644" /db_xref="GeneID:10103976" /translation="MKVSDILRLKGNTLYTVHPDEPLACAVQTMAERDIGSLVVMEHG DLVGMLTFREVIQVLVKNGGSVGTMLVRSAMDDAPLTCTLETDMDEVRRMMLGQHARY MPVMDKRMLMGVVSFYDVAKAVVDSQNFENKLLKAYIRDWPQEESPPAN" misc_feature 1987179..1987514 /locus_tag="Alide_1926" /note="The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-...; Region: CBS_pair; cl10010" /db_xref="CDD:99705" misc_feature 1987185..1987505 /locus_tag="Alide_1926" /note="FOG: CBS domain [General function prediction only]; Region: COG0517" /db_xref="CDD:30863" gene 1987695..1988789 /locus_tag="Alide_1927" /db_xref="GeneID:10103977" CDS 1987695..1988789 /locus_tag="Alide_1927" /EC_number="4.2.3.5" /inference="protein motif:TFAM:TIGR00033" /note="TIGRFAM: chorismate synthase; KEGG: dia:Dtpsy_2046 chorismate synthase; PFAM: chorismate synthase" /codon_start=1 /transl_table=11 /product="chorismate synthase" /protein_id="YP_004126558.1" /db_xref="GI:319762621" /db_xref="GO:0004107" /db_xref="InterPro:IPR000453" /db_xref="InterPro:IPR020541" /db_xref="GeneID:10103977" /translation="MSGNTLGTLFCVTNFGESHGPAIGCVIDGCPPGMALCEADIQAD LDRRRPGTSRHVTQRNEPDAVEILSGVYEGRTTGTPIALLIRNQDQRSKDYGDIAQSF RPGHADYAYWHKYGLRDPRGGGRSSARLTAPTVAAGAVAKKWLAETYGTRFRACMAQL GELPIPFENWEHVPNNPFFAPVADVQAYEDYMDALRKSGDSCGARLRVQATGVPVGLG EPLYDKLDADIAHAMMGLNAVKGVEIGAGFASVAQRGTTHGDSLTPQGFAGNNAGGVL GGISTGQDIEVQLAIKPTSSIISPRESIDVHGRSTEVVTRGRHDPCVGIRAAPIAEAL LALVLMDHALRQRAQCGDVRQAVPPIPASI" misc_feature 1987728..1988720 /locus_tag="Alide_1927" /note="Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304" /db_xref="CDD:143612" misc_feature order(1987728..1987745,1987764..1987766,1987770..1987772, 1987776..1987778,1987788..1987793,1987890..1987895, 1987899..1987904,1987923..1987928,1987932..1987934, 1987938..1987940,1987944..1987946,1988025..1988039, 1988067..1988072,1988094..1988096,1988277..1988279, 1988292..1988309,1988340..1988342,1988346..1988354, 1988364..1988366,1988370..1988375,1988382..1988390, 1988394..1988399,1988403..1988405,1988412..1988426, 1988433..1988438,1988442..1988447,1988457..1988462, 1988508..1988510,1988517..1988525,1988529..1988537, 1988556..1988558,1988562..1988573,1988580..1988582, 1988694..1988696) /locus_tag="Alide_1927" /note="Tetramer interface [polypeptide binding]; other site" /db_xref="CDD:143612" misc_feature order(1987749..1987751,1987836..1987838,1988007..1988012, 1988070..1988081,1988088..1988090,1988403..1988408, 1988565..1988570,1988574..1988582,1988661..1988663, 1988673..1988675) /locus_tag="Alide_1927" /note="Active site [active]" /db_xref="CDD:143612" misc_feature order(1988007..1988015,1988067..1988069,1988073..1988075, 1988400..1988408,1988568..1988570,1988574..1988582, 1988652..1988654,1988661..1988663,1988670..1988672) /locus_tag="Alide_1927" /note="FMN-binding site [chemical binding]; other site" /db_xref="CDD:143612" gene complement(1988851..1989300) /locus_tag="Alide_1928" /db_xref="GeneID:10103978" CDS complement(1988851..1989300) /locus_tag="Alide_1928" /inference="protein motif:PFAM:PF03477" /note="PFAM: ATP-cone domain protein; KEGG: dia:Dtpsy_2045 transcriptional regulator NrdR" /codon_start=1 /transl_table=11 /product="ATP-cone domain protein" /protein_id="YP_004126559.1" /db_xref="GI:319762622" /db_xref="InterPro:IPR003796" /db_xref="InterPro:IPR005144" /db_xref="GeneID:10103978" /translation="MKCPFCSHQDTQVIETRVSEDGDCIRRRRQCGACEKRFTTYERP EVNFPAVVKKDGRRVEYDRHKLLGSFKLALRKRPVSTVQIDSAIERIEEKLLHLGQRE VISSRIGELVMRELKKLDKVAYIRYASVYRSFEDIDEFRALVDEVRK" misc_feature complement(1988854..1989300) /locus_tag="Alide_1928" /note="transcriptional regulator NrdR; Validated; Region: nrdR; PRK00464" /db_xref="CDD:179038" misc_feature complement(1988890..1989150) /locus_tag="Alide_1928" /note="ATP cone domain; Region: ATP-cone; pfam03477" /db_xref="CDD:190653" gene complement(1989326..1990570) /locus_tag="Alide_1929" /db_xref="GeneID:10103979" CDS complement(1989326..1990570) /locus_tag="Alide_1929" /EC_number="2.1.2.1" /inference="protein motif:PRIAM:2.1.2.1" /note="KEGG: dia:Dtpsy_2044 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase" /codon_start=1 /transl_table=11 /product="glycine hydroxymethyltransferase" /protein_id="YP_004126560.1" /db_xref="GI:319762623" /db_xref="InterPro:IPR001085" /db_xref="InterPro:IPR019798" /db_xref="GeneID:10103979" /translation="MYQRNILVEQTDPEVWAAIQAENRRQEEHIELIASENYASPAVM AAQGSQLTNKYAEGYPGKRYYGGCENVDVIEQLAIDRIKQLFGAEAANVQPNSGSQAN QAVLMAFLKPGDTILGMSLAEGGHLTHGMALNMSGKWFNVVSYGLNEKEEIDYDAFEA KAREHRPKLIIGGASAYALRIDFERMARVAKEVGAIFWVDIAHYAGLVVAGEYPNPVP HADVVTSTTHKSLRGPRGGIILMKAEHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEA LSPEFKAYQQQVAKNAKVFAETLTQRGLRIVSGRTESHVMLVDLRAKGITGKAAEAAL GKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEETRITANLLADVLENPDD EAHLAAVRAKVNALTSRFPVYR" misc_feature complement(1989353..1990546) /locus_tag="Alide_1929" /note="Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of...; Region: SHMT; cd00378" /db_xref="CDD:99733" misc_feature complement(order(1989731..1989733,1989785..1989787, 1990154..1990159,1990262..1990264,1990283..1990285, 1990328..1990330,1990352..1990357,1990409..1990411, 1990463..1990465,1990478..1990480,1990505..1990510, 1990529..1990531,1990535..1990537)) /locus_tag="Alide_1929" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99733" misc_feature complement(order(1989491..1989493,1989866..1989868, 1989884..1989889,1989962..1989964,1989971..1989973, 1990046..1990048,1990193..1990195,1990274..1990279, 1990376..1990378,1990406..1990408,1990466..1990468)) /locus_tag="Alide_1929" /note="glycine-pyridoxal phosphate binding site [chemical binding]; other site" /db_xref="CDD:99733" misc_feature complement(order(1989491..1989493,1989884..1989886, 1990193..1990195,1990466..1990468)) /locus_tag="Alide_1929" /note="active site" /db_xref="CDD:99733" misc_feature complement(order(1989539..1989541,1989809..1989811, 1990190..1990192,1990196..1990198,1990208..1990210, 1990379..1990381,1990400..1990402)) /locus_tag="Alide_1929" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:99733" gene complement(1990812..1991624) /locus_tag="Alide_1930" /db_xref="GeneID:10103980" CDS complement(1990812..1991624) /locus_tag="Alide_1930" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase catalytic; KEGG: dia:Dtpsy_2043 lytic transglycosylase catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic" /protein_id="YP_004126561.1" /db_xref="GI:319762624" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10103980" /translation="MTASGKVIAGVRTVIADVVNGLLEVTHNGFALLGLVVVFAAVTL TARPDLRQIGEDELRGWLHARQVAEDGFPLEPAASDRAMAINPSELPREQAAVAYWLS KKYRVAPEPLAALVTEAYEIGSRTKLDPTLILAIIAVESSFNPFAQSAVGAQGLMQVM TRVHTDKYEGFGGQLAAFDPVANLRVGVKVLQECIARAGSLEGGLRYYVGAANLPDDG GYVAKVLAEHFRLRQVAGERKAAKPVLSTKAPAAPETAQPAGEKVALLDGGL" misc_feature complement(<1991025..>1991483) /locus_tag="Alide_1930" /note="Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741" /db_xref="CDD:31084" misc_feature complement(1990947..1991237) /locus_tag="Alide_1930" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature complement(order(1991055..1991057,1991145..1991147, 1991205..1991207)) /locus_tag="Alide_1930" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature complement(1991205..1991207) /locus_tag="Alide_1930" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 1992342..1996100 /locus_tag="Alide_1931" /db_xref="GeneID:10103981" CDS 1992342..1996100 /locus_tag="Alide_1931" /inference="similar to AA sequence:KEGG:Ajs_1662" /note="KEGG: ajs:Ajs_1662 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126562.1" /db_xref="GI:319762625" /db_xref="GeneID:10103981" /translation="MIGYRVSQVIQTIKHHRWARRAAWLLACLLGLWLLAWLVVPPVA RSQIERHASEALGRKVTVSKVEFLPWTLEATVHGLSIASEDGKASQVQIARIYIDAEL QSLWRLAPVIDAVQVDEPVIHVTQTAPGHYDFDDVLDRLAQQPKTRDGEARPLRFALY NLALRGGALDFDDRTVGKVHMLRGLRIDVPFLSNFSADREVKVTPRLAFELNGSAFDT AAQTTPFAQNRQTEVNLHVDGFDLGPFSGYIPSRVPVRLKSGVLDADLKLGFEQEDAT PRLTISGGVRLHGVRTTDAAGEPLLDFDALQVALKDVRPLQRIVDVDAIDWHGVHVHL RRDVAGAVALPGLAQPADGADATAKPTPAPQDAAWQVRLGRVGLHDGVVDWTDASLPG GKAAWKAENLQAEAWAVALPFQQPLQFRLSTQLSGGAAKGDAARLAVQGQATDVQAQA AVSVRGLSMAMAAPYLAGVLKPSLAGMLDADLGLARNGDAMAAKVATLSLGKLALDCA AAEKKCRTLRTAGIADAAKTSLAEAGRLEVSDVLVQLPQRSVTLGRVLVKQPRVLVSR AAKGGWMFEEWLPDAPEAASKGKPAAAAPAPWKLKLAALEVEGASLAFRDDAAARPVA LNASGLQLRARNFSYDDGRITPVEVHLDARVAAGRAEPGRLSYEGTVAMAPALAVQGR VRAQHVPVHAFEPYVTSDLNVDILRAEGSFAGDLRYVQETAGPAVSVAGDMSLDEVRV RAKDDVAADDEGKGGRRIADRGEELLRWKSLGLRGVAVNLKPGRPLALDVRETALSDF FARIIVHENGRINLQDIRKGAATEEVAAAPPKDAAAAAVTGTAQAAAQPADPMAPVIR FGPVALTNGSVHFSDYFIKPNYSADLSELTGRLSAFSSVPSEAGGEPQMAELELRGRA QGTASLEVSGKLNPLAKPLALDIQARMRDLELPPLSPYSIKYAGHGIERGKLSMDVAY KVQPDGQLTATNKLVLHQLAFGDPVEGAPASLPVRLAVALLADRNGVIDVDLPISGSL NDPQFSLGGVILKVIGNLVMKAITAPFSLLAGVFSGADEQGSIAFAPGSAALDDKARQ QLDKIAQELNNRPALKVTVAGWAQPQAEEEAWKRLRLRDLVQAQKRRAAVRAGESAAD VAPVSDAEYPALLKEAYRRADMKKPRNLVGLAKDLPQGEMEALLLKSIEVPGNAMQDL ALARGVAVRDYLASRQVALDRLFVGASKLQPAGEGGWTPKAELTLAAR" misc_feature 1992456..>1993001 /locus_tag="Alide_1931" /note="Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]; Region: AsmA; COG2982" /db_xref="CDD:32801" misc_feature 1992804..1993265 /locus_tag="Alide_1931" /note="Domain of Unknown Function (DUF748); Region: DUF748; pfam05359" /db_xref="CDD:191261" misc_feature 1993446..>1993742 /locus_tag="Alide_1931" /note="Domain of Unknown Function (DUF748); Region: DUF748; pfam05359" /db_xref="CDD:191261" misc_feature 1994157..1994654 /locus_tag="Alide_1931" /note="Domain of Unknown Function (DUF748); Region: DUF748; pfam05359" /db_xref="CDD:191261" misc_feature 1994904..1995371 /locus_tag="Alide_1931" /note="Domain of Unknown Function (DUF748); Region: DUF748; pfam05359" /db_xref="CDD:191261" misc_feature 1995555..>1995668 /locus_tag="Alide_1931" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cl02931" /db_xref="CDD:194484" gene 1996324..1998921 /locus_tag="Alide_1932" /db_xref="GeneID:10103982" CDS 1996324..1998921 /locus_tag="Alide_1932" /inference="similar to AA sequence:KEGG:Dtpsy_2041" /note="KEGG: dia:Dtpsy_2041 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126563.1" /db_xref="GI:319762626" /db_xref="GeneID:10103982" /translation="MSDAPEATPVQNKTSEPHPLDALTGGAFSAATSGERSARIREWL ATQPATDKLQEVFKELSARDKGAARAVRERLDEIRRAQGQAAVAAEWTAKAEALLATA QLNIADALAWQRDAAKAGAPLSREPLSTLKAQLSERVKTIEDLQHRVQVQREAAVLLA QRIEVLSTKPWKDAQAALELLSADVGHWQEQAQELTGDAAWPSVDVRFPAQLESSRTQ LLVVWEAFQSALAQTAAAAEDENAPLPPVPVWADELRLARGLPAEAAAAKAAPRAAAK PKVDPEVREKAMQAVREALSKLEEETAQGHGKASVGAATALRAVLKVHGKLIDAELER KVHAALVAAGELEGWQRWSADQLREDLVARAEALLQRPEGQALGGRKMQESLRQLREQ WKQADQGAPANHALWKRFDDACNAAHKVVEAWLERVRAEGAEHRAQRMALVEEVKAWA QEQAGAAAADWRAVNRALYQFAERWRAGGHVSEKVFAELQPLWKQAMALAAAPLESAQ KASLERRQAMIEEAASLGAAASLRIDAIKALQQRWQAEAQSVPLDRKQEQKLWDAFRK PLDEAFNRKSAERERSAAELSARDRAVLDASKALEAANASNDAQRIREAVAALEAALK DQEGAGALGQKQPVTQEGQAQEAMDSGVNEANAKPVPAAAARPVVAVRGDDRPGMRRS EPAPQARAGRAAGDRREGRDGRAPRDAAPRGPRLGDTAFRAQRDAMEHAQLALRKLAA QAHGEALTRLMTAWKSRDAAQVPSVQELGGKVSAGVRSSWAQAIGAPAGAAAEQALLR LEIAAELPTPAEQLAARRAMQLQMLTRRNEPAPAETWGQDAALVFAGASDEASARRLQ GVLKVLLRK" misc_feature 1997536..1997778 /locus_tag="Alide_1932" /note="Domain of Unknown Function (DUF349); Region: DUF349; pfam03993" /db_xref="CDD:190824" gene complement(1999034..1999118) /locus_tag="Alide_R0028" /note="tRNA-Leu5" /db_xref="GeneID:10103983" tRNA complement(1999034..1999118) /locus_tag="Alide_R0028" /product="tRNA-Leu" /db_xref="GeneID:10103983" gene complement(1999295..1999379) /locus_tag="Alide_R0029" /note="tRNA-Leu4" /db_xref="GeneID:10103984" tRNA complement(1999295..1999379) /locus_tag="Alide_R0029" /product="tRNA-Leu" /db_xref="GeneID:10103984" gene 1999399..2001690 /locus_tag="Alide_1933" /db_xref="GeneID:10103985" CDS 1999399..2001690 /locus_tag="Alide_1933" /inference="protein motif:TFAM:TIGR02063" /note="SMART: Cold shock protein; manually curated; KEGG: dia:Dtpsy_1240 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein" /codon_start=1 /transl_table=11 /product="ribonuclease r" /protein_id="YP_004126564.1" /db_xref="GI:319762627" /db_xref="GO:0003723" /db_xref="GO:0004518" /db_xref="GO:0004540" /db_xref="InterPro:IPR001900" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR004476" /db_xref="InterPro:IPR011129" /db_xref="InterPro:IPR011805" /db_xref="InterPro:IPR013223" /db_xref="GeneID:10103985" /translation="MYSKKKYAGASATQISSSDEIEGTVQGHRDGHGFVVRDDGEPDI YIPPNEMRAVLHKDRVRVRIVRQDRRGRPEGRVVEIVERPPQPIIGRLLQESGVWLVA PEDKRYGQDVLIPKGATGAAATGQVVVVELTEPPALFGQPVGRVVEVLGEVDDPGMEV EIAVRKYGVPHEFSEACLAQAKALPDKVRAQDKRHRVDLTDIPLVTIDGEDARDFDDA VYCEPAKIGRTKGWRLLVAIADVSHYVETGSAIDVDAYDRATSVYFPRRVIPMLPEKL SNGLCSLNPHVERLCMVCDMLVTAKGEVHAYQFYPAVMLSHARFTYNEVAAVLANTRG PEAARHEERVEDLLNLHDVYRALLAARQARGAVDFETTETQIVCDDNGRIEKIEPRVR TEAHRLIEEAMLAANVCSADFIAQAGRPALYRVHEGPTPEKQEILRAYLKAMGVGMSI GDEPRPQEFQAIAEATKDRPDAQQIHTMLLRSMQQAIYTPINSGHFGLAFEAYTHFTS PIRRYPDLLVHRVIKSILAGTKYMLPALPTPGEAQFKLAKRLASKAAEPTIRPAKAGA ASVRETQAWEAAGLHCSANERRADEASRDVEAWLKCQYMREHLGEEYSGVVSAVTSFG IFVTLDALYVEGLVHITELGGEYFKFDEARQELRGERTGIRYAIGARVRVQVSRVDLD GRRIDFRLVDEAGDVVPGKSSKAREPGKHQPHEKGRDQRMADARPFDKAGGLRRSKDQ APPSGGKKQGSGKSGHKGRRSRG" misc_feature 1999405..2001471 /locus_tag="Alide_1933" /note="ribonuclease R; Region: RNase_R; TIGR02063" /db_xref="CDD:188196" misc_feature 1999465..1999638 /locus_tag="Alide_1933" /note="S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain...; Region: S1_like; cl09927" /db_xref="CDD:195927" misc_feature 1999984..2000976 /locus_tag="Alide_1933" /note="RNB domain; Region: RNB; pfam00773" /db_xref="CDD:189712" misc_feature 2001223..2001471 /locus_tag="Alide_1933" /note="S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an...; Region: S1_RNase_R; cd04471" /db_xref="CDD:88436" misc_feature order(2001250..2001252,2001274..2001276,2001307..2001309, 2001313..2001315) /locus_tag="Alide_1933" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88436" gene 2001713..2002468 /locus_tag="Alide_1934" /db_xref="GeneID:10103986" CDS 2001713..2002468 /locus_tag="Alide_1934" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1241 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004126565.1" /db_xref="GI:319762628" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10103986" /translation="MSDTTKIAIVTGAGTGIGKAAALALLRDGWSVALAGRREQPLLD VAQQARAGERALPVPTDVADPEAVRHLFDRTVDRFGRVDLLFNNAGVGAPAIPLEDLS VQQWKTVVDINLNGMFFCIQNAFRVMKAQSPRGGRIINNGSISAHTPRPNSIAYTATK HAVMGMTKTASLDGRKYDIAVGQIDVGNAQTELAQRMTQGVQQANGQIAAEPLMDVAI VGQSVLYMANLPLEANVMFHTVMATKMPFAGRG" misc_feature 2001791..2002393 /locus_tag="Alide_1934" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature order(2001818..2001826,2001890..2001898,2001974..2001982, 2002046..2002048,2002133..2002141,2002178..2002180, 2002190..2002192,2002268..2002279,2002283..2002288) /locus_tag="Alide_1934" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature order(2002049..2002051,2002139..2002141,2002178..2002180, 2002190..2002192) /locus_tag="Alide_1934" /note="active site" /db_xref="CDD:187544" gene 2002559..2003209 /locus_tag="Alide_1935" /db_xref="GeneID:10103987" CDS 2002559..2003209 /locus_tag="Alide_1935" /inference="similar to AA sequence:KEGG:Aave_3388" /note="KEGG: aav:Aave_3388 cytochrome c553-like protein" /codon_start=1 /transl_table=11 /product="cytochrome c553-like protein" /protein_id="YP_004126566.1" /db_xref="GI:319762629" /db_xref="InterPro:IPR009056" /db_xref="GeneID:10103987" /translation="MRPRVLACTACHGKEGRATPGGYFPRIAGKPAGYLYNQLLNFRD GRRSYPQMSRLLEHLTDDYLREIAGYFSALDLPYVSAAPVPASQALIERGRQLVRHGD EGRKIPACVQCHGDAMTGVAPFVPGLLGLSREYVGSQLGAWQTGQRRAQAPDCMAEIA RQLTVEDVGAVSAWLAAQAVPGQGKPAMSFKGELTMPCGSVRPPHASAPATGRGAR" misc_feature <2002577..2002858 /locus_tag="Alide_1935" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature 2002793..2003119 /locus_tag="Alide_1935" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 2003206..2004495 /locus_tag="Alide_1936" /db_xref="GeneID:10103988" CDS 2003206..2004495 /locus_tag="Alide_1936" /EC_number="1.1.99.3" /inference="protein motif:PRIAM:1.1.99.3" /note="KEGG: aav:Aave_3387 cytochrome c, class I; PFAM: cytochrome c class I" /codon_start=1 /transl_table=11 /product="gluconate 2-dehydrogenase (acceptor)" /protein_id="YP_004126567.1" /db_xref="GI:319762630" /db_xref="InterPro:IPR003088" /db_xref="InterPro:IPR009056" /db_xref="InterPro:IPR014353" /db_xref="GeneID:10103988" /translation="MSVARVLLGWAVGCVVLAVAVGGGVVALNRLDEAALPADDAPLP ATSEAIARGEYLARAGNCMSCHTRQGGPAYAGGRAIDTPFGAVHASNLTPDDATGIGL WSAGEFWRALHNGRSRDGRLLYPAFPYPSYTHITRADSDAIYAYLRSLPPVEQPNRPH ALRFPFNTQVALAAWRALFFRPGVLLEQPARSAEWNRGAYLVLGLGHCAACHTPRNAL GAPRADAAFRGGLIPVQNWYAPALTSPHEAAVGAWPVEEAVALLKTGVSPQATVSGPM AEVVFRSLQYLDDADLRAIVLYLRSLPQEDGPAPPTARPSGAVMEKGRDIYRQQCVQC HGEQGEGRRGAFPTLAGNRAVLLADTTNLVQVVLRGGYLPATAGNPRPHGMPPFTQSL RDEEIASVLSYIRNAWGNEAAKVDTIDVYRARERRGS" misc_feature 2003680..2004111 /locus_tag="Alide_1936" /note="Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010" /db_xref="CDD:32193" misc_feature <2004064..>2004261 /locus_tag="Alide_1936" /note="Cytochrome c [Energy production and conversion]; Region: COG3258" /db_xref="CDD:33069" misc_feature 2004166..2004429 /locus_tag="Alide_1936" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 2004515..2004898 /locus_tag="Alide_1937" /db_xref="GeneID:10103989" CDS 2004515..2004898 /locus_tag="Alide_1937" /inference="protein motif:PFAM:PF00085" /note="PFAM: Thioredoxin domain-containing protein; KEGG: dia:Dtpsy_1244 hypothetical protein" /codon_start=1 /transl_table=11 /product="thioredoxin domain-containing protein" /protein_id="YP_004126568.1" /db_xref="GI:319762631" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR017936" /db_xref="GeneID:10103989" /translation="MGMGSAAAPSSAHLPSSGPWWVVCLCAQWCGACREYRGVFEELA GDWPQVRFEWVDVEDEENVVGEVDVETFPTILIADGQVARFLGPVLPQAQVLGRMLQG MRGDPGAPAADAQAQALFRRIAASR" misc_feature 2004578..2004793 /locus_tag="Alide_1937" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature order(2004602..2004604,2004611..2004613) /locus_tag="Alide_1937" /note="catalytic residues [active]" /db_xref="CDD:48496" gene 2005099..2005689 /locus_tag="Alide_1938" /db_xref="GeneID:10103990" CDS 2005099..2005689 /locus_tag="Alide_1938" /inference="protein motif:PFAM:PF02576" /note="PFAM: protein of unknown function DUF150; KEGG: dia:Dtpsy_1245 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126569.1" /db_xref="GI:319762632" /db_xref="InterPro:IPR003728" /db_xref="InterPro:IPR020790" /db_xref="GeneID:10103990" /translation="MALQQIVEQTVAGLGYDLVEIERSAGGLLRITIDLMWAPPADGG EVQATGQFVTVEDCEKVTRQLQFALEVEGVDYKRLEVSSPGIDRLLRNEQDFTRFEGE VIDITLKEPLGAAAGGQVAANRKKFRGTLERVPAGGWQIVWSDEPPVKPGQRVSKKRV PAPLQALGFTLDELREARLAPIVDFKGRGARPGAAG" misc_feature 2005099..2005641 /locus_tag="Alide_1938" /note="ribosome maturation protein RimP; Reviewed; Region: PRK00092" /db_xref="CDD:178857" misc_feature 2005105..>2005500 /locus_tag="Alide_1938" /note="The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members...; Region: Sm_like; cl00259" /db_xref="CDD:193733" misc_feature 2005327..2005641 /locus_tag="Alide_1938" /note="The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members...; Region: Sm_like; cl00259" /db_xref="CDD:193733" misc_feature order(2005408..2005428,2005471..2005509,2005516..2005530) /locus_tag="Alide_1938" /note="Sm1 motif; other site" /db_xref="CDD:99752" misc_feature order(2005417..2005419,2005423..2005428,2005471..2005473, 2005477..2005479,2005495..2005497,2005522..2005524, 2005573..2005581,2005606..2005611,2005615..2005632) /locus_tag="Alide_1938" /note="D3 - B interaction site; other site" /db_xref="CDD:99752" misc_feature order(2005417..2005419,2005423..2005425,2005474..2005476, 2005609..2005611,2005618..2005632) /locus_tag="Alide_1938" /note="D1 - D2 interaction site; other site" /db_xref="CDD:99752" misc_feature order(2005420..2005428,2005501..2005503,2005576..2005581, 2005603..2005614,2005618..2005632) /locus_tag="Alide_1938" /note="Hfq - Hfq interaction site; other site" /db_xref="CDD:99752" misc_feature order(2005501..2005503,2005507..2005509,2005606..2005608) /locus_tag="Alide_1938" /note="RNA binding pocket [nucleotide binding]; other site" /db_xref="CDD:99752" misc_feature order(2005573..2005581,2005603..2005629) /locus_tag="Alide_1938" /note="Sm2 motif; other site" /db_xref="CDD:99752" gene 2005758..2007242 /locus_tag="Alide_1939" /db_xref="GeneID:10103991" CDS 2005758..2007242 /locus_tag="Alide_1939" /inference="protein motif:TFAM:TIGR01953" /note="TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein; KEGG: dia:Dtpsy_1246 NusA antitermination factor; SMART: KH domain protein" /codon_start=1 /transl_table=11 /product="transcription termination factor nusa" /protein_id="YP_004126570.1" /db_xref="GI:319762633" /db_xref="GO:0003723" /db_xref="GO:0030528" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR010213" /db_xref="InterPro:IPR010214" /db_xref="InterPro:IPR013735" /db_xref="GeneID:10103991" /translation="MNRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGDVD LRVSIDRDSGDYETFRRWLVVPDDAGLQNPDAEELLMDARERVPDIEVGEYIEEPVES VPIGRIGAMAAKQVILQKIRDAEREMLLNDFMSRGEKIFTGTVKRMDKGDLIIESGRV EGRLRRSEMIPKENLRNGDRVRAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEI EQGLLEIKSCARDPGSRAKIAVLSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIV LWSDDPAQFVIGALAPANVQSIVVDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELT GWKINIMDAAESAQKQADETDAARRLFMEKLDVDEEIADILIAEGFESLEEVAYVPLQ EMLEIESFDEDTVNELRVRAKDALLTMEIAREESMGSVSQDLRDLEGLTPELIAKLAD AGVNTRDDLADLAIDELTELTGQSAEDAKALIMKAREHWFTGQE" misc_feature 2005758..2007173 /locus_tag="Alide_1939" /note="transcription elongation factor NusA; Validated; Region: nusA; PRK09202" /db_xref="CDD:181696" misc_feature 2005767..2006141 /locus_tag="Alide_1939" /note="NusA N-terminal domain; Region: NusA_N; pfam08529" /db_xref="CDD:192057" misc_feature 2006160..2006360 /locus_tag="Alide_1939" /note="S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and...; Region: S1_NusA; cd04455" /db_xref="CDD:88421" misc_feature order(2006193..2006195,2006217..2006219,2006244..2006246, 2006250..2006252) /locus_tag="Alide_1939" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88421" misc_feature order(2006199..2006201,2006211..2006213,2006238..2006240, 2006244..2006246,2006343..2006345) /locus_tag="Alide_1939" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:88421" misc_feature 2006601..2006780 /locus_tag="Alide_1939" /note="NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134" /db_xref="CDD:48406" misc_feature 2006718..2006729 /locus_tag="Alide_1939" /note="G-X-X-G motif; other site" /db_xref="CDD:48406" misc_feature 2006856..2007005 /locus_tag="Alide_1939" /note="transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954" /db_xref="CDD:131009" misc_feature 2007084..2007224 /locus_tag="Alide_1939" /note="transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954" /db_xref="CDD:131009" gene 2007267..2010098 /locus_tag="Alide_1940" /db_xref="GeneID:10103992" CDS 2007267..2010098 /locus_tag="Alide_1940" /inference="protein motif:TFAM:TIGR00487" /note="KEGG: dia:Dtpsy_1247 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Initiation factor 2 associated domain protein ; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein" /codon_start=1 /transl_table=11 /product="translation initiation factor if-2" /protein_id="YP_004126571.1" /db_xref="GI:319762634" /db_xref="GO:0003743" /db_xref="GO:0005525" /db_xref="InterPro:IPR000178" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006847" /db_xref="InterPro:IPR013575" /db_xref="GeneID:10103992" /translation="MSSNTVAEFAAELKKSPETLLDQLKSAGVAKSTATDLLNETDKQ KLLAYLQASHGTAAGDRKKITLVKKSTSEIKQADATGKARTIQVEVRKKRTFIKREDD AGAASESAVPSRSVEDLELARREEEARRQAELISRQEEELAAARREREAREQREREAE ERAAAYAAQQAEKKAQESAEKQEAQREAAAEAEARANAQAEARAKAEAESKARAAEEA ARAADLDERRRKALAEAEAIRAMMAAPKKVLVAKKPEEVKPAAAKTAAGADAKKGTLH KPAATAGGGARAGAPAAPGSGKEVKSAKLSSSWANDATKKKEIKTRGDSSGGVGRNNW RSGPRGRRGNDRNEQHQPQVAAEFRAIEVHVPETITVAELAHKMAIKASEVIKALMKM GQMVTINQPLDQDTAMIVVEEMGHKAVVAALDDPEAFTAEEVSSHQAEALPRAPVVTV MGHVDHGKTSLLDYIRRAKVAPGEAGGITQHIGAYHVKTPRGIVTFLDTPGHEAFTAM RARGAQATDIVILVCAADDGVMPQTREAIKHAKAAGVPIVVAITKADKHEANPEKVKQ ELVAEEVVPEEYGGDSPFVAVSSKTGMGIDELLEQVLLQAEVLELKAPVDAMAKGLVI EAQLDKGRGPVATVLVQSGTLKVGDVVLAGQTFGRVRAMTDENGRTTKDAGPSIPVEI QGLSEVPQAGDEFMVLSDERRAREIATYRAGKFRNTKLAKQQAAKLESVFSEMTAGEV QHLPIIIKADVQGSQEALAASLLKLSTDEIKVQLVYAGVGGISESDVNLAIASKAIVI GFNVRADAGARKTAEANGVQLHYYNIIYDAVDELKAAMSGMLAPEQREEVIGTAEIRT VFVATKIGTIAGSYITSGQVTRGCRFRLLRDNVVIYTGEVESVRRLKDDVKEVKEGFE CGIKLRNYTDIKEGDQLELFEIKEIARTL" misc_feature 2007267..2007416 /locus_tag="Alide_1940" /note="Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760" /db_xref="CDD:147093" misc_feature 2007447..2007566 /locus_tag="Alide_1940" /note="Bacterial translation initiation factor IF-2 associated region; Region: IF2_assoc; pfam08364" /db_xref="CDD:192015" misc_feature 2008359..2010095 /locus_tag="Alide_1940" /note="translation initiation factor IF-2; Region: IF-2; TIGR00487" /db_xref="CDD:161900" misc_feature 2008362..2008517 /locus_tag="Alide_1940" /note="Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760" /db_xref="CDD:147093" misc_feature 2008602..2009054 /locus_tag="Alide_1940" /note="IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases...; Region: IF2_eIF5B; cd01887" /db_xref="CDD:133287" misc_feature 2008620..2008643 /locus_tag="Alide_1940" /note="G1 box; other site" /db_xref="CDD:133287" misc_feature order(2008623..2008625,2008629..2008631,2008641..2008646, 2008653..2008655,2008662..2008667,2008713..2008718, 2008770..2008775,2008842..2008847,2008950..2008952, 2008962..2008964) /locus_tag="Alide_1940" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133287" misc_feature order(2008626..2008646,2008773..2008775,2008920..2008925, 2008929..2008934,2009028..2009036) /locus_tag="Alide_1940" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133287" misc_feature 2008695..2008715 /locus_tag="Alide_1940" /note="Switch I region; other site" /db_xref="CDD:133287" misc_feature 2008701..2008703 /locus_tag="Alide_1940" /note="G2 box; other site" /db_xref="CDD:133287" misc_feature 2008758..2008769 /locus_tag="Alide_1940" /note="G3 box; other site" /db_xref="CDD:133287" misc_feature 2008764..2008820 /locus_tag="Alide_1940" /note="Switch II region; other site" /db_xref="CDD:133287" misc_feature 2008920..2008931 /locus_tag="Alide_1940" /note="G4 box; other site" /db_xref="CDD:133287" misc_feature 2009028..2009036 /locus_tag="Alide_1940" /note="G5 box; other site" /db_xref="CDD:133287" misc_feature 2009121..2009402 /locus_tag="Alide_1940" /note="This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the...; Region: IF2_mtIF2_II; cd03702" /db_xref="CDD:58093" misc_feature 2009442..2009768 /locus_tag="Alide_1940" /note="Translation-initiation factor 2; Region: IF-2; pfam11987" /db_xref="CDD:152422" misc_feature 2009814..2010062 /locus_tag="Alide_1940" /note="mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation...; Region: mtIF2_IVc; cd03692" /db_xref="CDD:58083" gene 2010102..2010482 /locus_tag="Alide_1941" /db_xref="GeneID:10103993" CDS 2010102..2010482 /locus_tag="Alide_1941" /inference="protein motif:TFAM:TIGR00082" /note="KEGG: aav:Aave_3382 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A" /codon_start=1 /transl_table=11 /product="ribosome-binding factor a" /protein_id="YP_004126572.1" /db_xref="GI:319762635" /db_xref="InterPro:IPR000238" /db_xref="GeneID:10103993" /translation="MAAKKSSTPNRGFKVADQIQRDLAELIRDLKDPRIGMCTLQAVE VTPDYAHAKVFFSVLVGDGQATQEALNQAAGFLRNGLFKRLSIHTVPTLHFVFDRTTE RASDMNALIARAVASRSKDDDVND" misc_feature 2010114..2010464 /locus_tag="Alide_1941" /note="Ribosome-binding factor A; Region: RBFA; cl00542" /db_xref="CDD:186071" gene 2010475..2011479 /locus_tag="Alide_1942" /db_xref="GeneID:10103994" CDS 2010475..2011479 /locus_tag="Alide_1942" /inference="protein motif:TFAM:TIGR00431" /note="KEGG: ajs:Ajs_2559 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase b" /protein_id="YP_004126573.1" /db_xref="GI:319762636" /db_xref="GO:0003723" /db_xref="GO:0009982" /db_xref="InterPro:IPR002501" /db_xref="InterPro:IPR014780" /db_xref="GeneID:10103994" /translation="MTERAPRVRVQRRPVHGVLLLDKPLGFSSNDALQKVKWLLRAEK AGHTGTLDPLATGVLPLCFGAATKFSALQLDAPKTYEAIALLGTTTTTGDAEGEVLER RAVDPAQLTPERLAEVQRQFTGPIRQVPPMHSALKKDGKALYEYARAGVEVERPARDV TIHALNLALTLAGQAQAAIKITVTCSKGTYIRTLGEDIGGALGCGAHLTFLRRLDTGG LGVERCVTLAQIEALDEDARLGLLQPVQTLLAGHAVVTLGEQDAGRFLSGMRRRGPWP DAGAVAVYGERPHALLGVGHVLQGELIPDRLLSPLEIQQILQGAPRAHIERGTLETTL " misc_feature 2010520..2011404 /locus_tag="Alide_1942" /note="tRNA pseudouridine synthase B; Provisional; Region: truB; PRK01851" /db_xref="CDD:179343" misc_feature 2010523..2011365 /locus_tag="Alide_1942" /note="PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of...; Region: PseudoU_synth_EcTruB; cd02573" /db_xref="CDD:30022" misc_feature order(2010556..2010558,2010562..2010564,2010571..2010573, 2010607..2010615,2010619..2010633,2010673..2010675, 2010682..2010687,2010694..2010696,2010706..2010708, 2010712..2010714,2010871..2010885,2010946..2010948, 2011033..2011050,2011111..2011113) /locus_tag="Alide_1942" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:30022" misc_feature order(2010619..2010630,2011048..2011050) /locus_tag="Alide_1942" /note="active site" /db_xref="CDD:30022" gene 2011476..2013305 /locus_tag="Alide_1943" /db_xref="GeneID:10103995" CDS 2011476..2013305 /locus_tag="Alide_1943" /inference="protein motif:TFAM:TIGR01394" /note="KEGG: ajs:Ajs_2558 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein" /codon_start=1 /transl_table=11 /product="gtp-binding protein typa" /protein_id="YP_004126574.1" /db_xref="GI:319762637" /db_xref="GO:0005525" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006298" /db_xref="GeneID:10103995" /translation="MSKQIRNIAIIAHVDHGKTTMVDQLLRQSGTFAAHEKVVDTVMD SNAIERERGITILAKNCAVSWEGTHINILDTPGHADFGGEVERALSMVDGVVLLIDAQ EGPMPQTRFVTKKALALGLKPIVVVNKVDKPGARPDYVVNAAFDLFDKLGATDEQLDF PVVYASGINGWSSLEQGAPGEQWGPDMSALFNTILKHVPSVKGDPAAPVQMQVSALDY STFVGRIGVGRITQGTLKAGQDVLVMAGPDGASYKGRINQIHQFQGLDRVQVSEAGPS EIVLINGIENVGIGETITDPANPQPLPMLKIDEPTLTMNFCVNTSPLAGREGKFVTSR QIWDRLQRELRSNVALRVKETDEDGIFEVSGRGELHLTILLEEMRREGYELAVSKPRV VFKDIDGVRCEPIELVTADIEEGHQGGVMQALGERKGELVNMEPDGRGRVRLEYRIPA RGLIGFTNEFLNLTRGSGLISNIFDSYEPHKGEIGGRKNGVLISMDDGEIFTYALGKL DDRGRMFVRAGDPVYEGMIVGVHNRDNDLVVNATRTKQLTNFRVSGKEDAIKVTPPIE LSLEYGVEFIEEDELVEITPKSIRLRKRHLKEHERKRASREGA" misc_feature 2011488..2013242 /locus_tag="Alide_1943" /note="GTP-binding protein TypA/BipA; Region: TypA_BipA; TIGR01394" /db_xref="CDD:162336" misc_feature 2011488..2012075 /locus_tag="Alide_1943" /note="TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella...; Region: TypA_BipA; cd01891" /db_xref="CDD:133291" misc_feature 2011509..2011532 /locus_tag="Alide_1943" /note="G1 box; other site" /db_xref="CDD:133291" misc_feature order(2011512..2011514,2011518..2011520,2011530..2011535, 2011542..2011544,2011551..2011556,2011650..2011655, 2011707..2011712,2011779..2011784,2011890..2011892, 2011902..2011904) /locus_tag="Alide_1943" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133291" misc_feature order(2011518..2011535,2011857..2011862,2011866..2011868, 2011971..2011979) /locus_tag="Alide_1943" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133291" misc_feature 2011617..2011652 /locus_tag="Alide_1943" /note="Switch I region; other site" /db_xref="CDD:133291" misc_feature 2011638..2011640 /locus_tag="Alide_1943" /note="G2 box; other site" /db_xref="CDD:133291" misc_feature 2011695..2011706 /locus_tag="Alide_1943" /note="G3 box; other site" /db_xref="CDD:133291" misc_feature 2011701..2011757 /locus_tag="Alide_1943" /note="Switch II region; other site" /db_xref="CDD:133291" misc_feature 2011857..2011868 /locus_tag="Alide_1943" /note="G4 box; other site" /db_xref="CDD:133291" misc_feature 2011971..2011979 /locus_tag="Alide_1943" /note="G5 box; other site" /db_xref="CDD:133291" misc_feature 2012103..2012360 /locus_tag="Alide_1943" /note="BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a...; Region: BipA_TypA_II; cd03691" /db_xref="CDD:58082" misc_feature 2012682..2012918 /locus_tag="Alide_1943" /note="BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a...; Region: BipA_TypA_C; cd03710" /db_xref="CDD:58063" gene complement(2013373..2014251) /locus_tag="Alide_1944" /db_xref="GeneID:10103996" CDS complement(2013373..2014251) /locus_tag="Alide_1944" /inference="similar to AA sequence:KEGG:Vapar_3272" /note="KEGG: vap:Vapar_3272 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126575.1" /db_xref="GI:319762638" /db_xref="GeneID:10103996" /translation="MQSRPTQKALPPTSPVPATAVAPRTLPLHAVPSTLLIPLAARAA GDACFPHLACGDAEASRQLRHLGVDVSTYLADRPTVLNVLWRTRRIRAAGRAFFARHP HAWGINLGCGLSHYFQWLDNGRNTWVDADLPEVMALRRALDPPLSPRLRRAILDITHP QWWQALHLPRRALAQPLFVVCEGVLMYLRPAQARQVLAQFATHAPAGSRLWIDVLPQC AVGHARWHSSVGRTGAEFQWGIRHPDELCASHPRLRLLQLHSVAECYGWLGRGLDALW NPWIGMPLYGLAELGV" misc_feature complement(2013382..2014164) /locus_tag="Alide_1944" /note="Leucine carboxyl methyltransferase; Region: LCM; cl01306" /db_xref="CDD:194096" gene 2014585..2015676 /locus_tag="Alide_1945" /db_xref="GeneID:10103997" CDS 2014585..2015676 /locus_tag="Alide_1945" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2556 3-hydroxyisobutyryl-CoA hydrolase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004126576.1" /db_xref="GI:319762639" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10103997" /translation="MTEMATEVVAEVRGRVGCITLNRPKALNALSLGMVRDLMATLLA WQHDDKVLAVAIRGNGREGPFGAFCAGGDIRFLHAAGSVGNPQLEDFFTEEYALNHLI HNYGKPYIAFMDGIVMGGGMGISQGGSLRIVTERTKMAMPETAIGLFPDVGGGYFLSR CPGRVGEWLALTGDTIGAADAIAFGLADGFLPADQQAAVWEGLGTQAFADGAAAQQWV ASKFVAAGACQISARTQIDQYFALDGVSAIVAALERANDDWARATAATLRKRSPLMLH VVLEQIRRARAMGLADDLRMERDMVRHCFYLRPGESETLEGIRALAVDKDQNPAWRPA RIEDVSPELVQAFFKSPWPAHAHPLAALR" misc_feature 2014594..2015634 /locus_tag="Alide_1945" /note="3-hydroxyisobutyryl-CoA hydrolase; Provisional; Region: PRK05617" /db_xref="CDD:180165" misc_feature 2014606..2015187 /locus_tag="Alide_1945" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(2014663..2014665,2014669..2014671,2014765..2014767, 2014792..2014806,2014930..2014932,2014936..2014944, 2015008..2015013,2015020..2015022) /locus_tag="Alide_1945" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(2014798..2014800,2014942..2014944) /locus_tag="Alide_1945" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(2014882..2014884,2014906..2014908,2014969..2014980, 2015014..2015025,2015041..2015043,2015047..2015055, 2015059..2015064,2015074..2015079,2015083..2015088, 2015092..2015097,2015104..2015106,2015137..2015139, 2015146..2015148) /locus_tag="Alide_1945" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(2015627..2016469) /locus_tag="Alide_1946" /db_xref="GeneID:10103998" CDS complement(2015627..2016469) /locus_tag="Alide_1946" /inference="similar to AA sequence:KEGG:Ajs_2555" /note="KEGG: ajs:Ajs_2555 transmembrane anti-sigma factor" /codon_start=1 /transl_table=11 /product="transmembrane anti-sigma factor" /protein_id="YP_004126577.1" /db_xref="GI:319762640" /db_xref="GeneID:10103998" /translation="MNSPRPPLPPNGAELHALVDGRLPPEHAERLRASLDARTREEAD DWERQRALLRTLHADWLERPVPDALRQAADQLQDTHDGRSRWALWGGIAASWVLAFGL GWGLHGPWGGGATLAVAPSSPPLRFAQQAAVAHAVYQPEQRHPVEVTAAQQDHLVQWL SKRLARPLTVPHLQAQGFDLVGGRLLPGGSGARAQFMYQDTAGKRITLYLGALEDAQA EAFHFYSQGPVSGFYWVEHGFGYALSGELPRPALQALATAVYQQLQLSAAPPEGERAP ARGS" misc_feature complement(2015681..2016433) /locus_tag="Alide_1946" /note="Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]; Region: COG5662" /db_xref="CDD:35221" gene complement(2016494..2017018) /locus_tag="Alide_1947" /db_xref="GeneID:10103999" CDS complement(2016494..2017018) /locus_tag="Alide_1947" /inference="protein motif:TFAM:TIGR02937" /note="KEGG: dia:Dtpsy_1254 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor, sigma-70 family" /protein_id="YP_004126578.1" /db_xref="GI:319762641" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0016987" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:10103999" /translation="MNRAQIVEQLPGLRRYARALTGDAWAADDLVQDTLERACRKWLL WRSGSDLRAWLFTLMHNLYLNQRRGLLAVQALDAESLAALPGADGAASDVAIDLDRCL QRLPAEQRAVLLLVTLEDMAYADVARVLDIPVGTVMSRLSRARSRMRELLEQAPAHAP AFPRDPSTPLRRMK" misc_feature complement(2016815..2016991) /locus_tag="Alide_1947" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature complement(<2016608..2016727) /locus_tag="Alide_1947" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cl01055" /db_xref="CDD:197420" gene complement(2017035..2017400) /locus_tag="Alide_1948" /db_xref="GeneID:10104000" CDS complement(2017035..2017400) /locus_tag="Alide_1948" /inference="similar to AA sequence:KEGG:Dtpsy_1255" /note="KEGG: dia:Dtpsy_1255 secreted repeat of unknown function" /codon_start=1 /transl_table=11 /product="secreted repeat protein" /protein_id="YP_004126579.1" /db_xref="GI:319762642" /db_xref="InterPro:IPR005297" /db_xref="InterPro:IPR014558" /db_xref="GeneID:10104000" /translation="MTKLGSLLVALALAGGYSMSHAQVSAQDGVLVGPNGMTLYVFDK DMAGSGKSVCNGPCATNWPPLAATAAPGGDGYSLIQRDDGTKQVAYKGKPLYYWSKDS KPGDKTGDGVNNVWHTATP" sig_peptide complement(2017332..2017400) /locus_tag="Alide_1948" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.672 at residue 23" misc_feature complement(2017203..>2017313) /locus_tag="Alide_1948" /note="Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640" /db_xref="CDD:112457" misc_feature complement(2017041..2017175) /locus_tag="Alide_1948" /note="Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640" /db_xref="CDD:112457" gene complement(2017500..2017973) /locus_tag="Alide_1949" /db_xref="GeneID:10104001" CDS complement(2017500..2017973) /locus_tag="Alide_1949" /inference="protein motif:TFAM:TIGR00086" /note="KEGG: dia:Dtpsy_1256 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein" /codon_start=1 /transl_table=11 /product="ssra-binding protein" /protein_id="YP_004126580.1" /db_xref="GI:319762643" /db_xref="GO:0003723" /db_xref="InterPro:IPR000037" /db_xref="InterPro:IPR020081" /db_xref="GeneID:10104001" /translation="MAKKPETSSRIADNKKAAYNYFFEERHEAGMVLHGWEVKALREG KVQLTDGYVVIKDGELFLIGCQINPLKTASTHVNPDATRIKKLLLHKDEIRRLIGKVE QKGYTLVPLNLHWKDGRAKCDIALAKGKAEHDKRDTIKEREGKREVERAMKSRHR" misc_feature complement(2017584..2017934) /locus_tag="Alide_1949" /note="Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294" /db_xref="CDD:187755" misc_feature complement(order(2017611..2017613,2017695..2017712, 2017797..2017799,2017848..2017850,2017857..2017862, 2017866..2017871,2017875..2017892)) /locus_tag="Alide_1949" /note="SmpB-tmRNA interface; other site" /db_xref="CDD:187755" gene 2018120..2018560 /locus_tag="Alide_1950" /db_xref="GeneID:10104002" CDS 2018120..2018560 /locus_tag="Alide_1950" /inference="protein motif:PFAM:PF03364" /note="PFAM: cyclase/dehydrase; KEGG: dia:Dtpsy_1257 cyclase/dehydrase" /codon_start=1 /transl_table=11 /product="cyclase/dehydrase" /protein_id="YP_004126581.1" /db_xref="GI:319762644" /db_xref="InterPro:IPR005031" /db_xref="GeneID:10104002" /translation="MKTVNKSVLIWYSPEEMFALVTDVAKYPQFLPWCDHATVLERSE HGMKAEVGISLGGLHKSFVTRNTHEEGRRVKMELVEGPFSKLDGDWHFHPVGDGSQRA CKVELQLHYGFDSKALAALVGPVFDRIAATFVDAFIKRAEQVYG" misc_feature 2018129..2018551 /locus_tag="Alide_1950" /note="Coenzyme Q-binding protein COQ10p and similar proteins; Region: COQ10p_like; cd07813" /db_xref="CDD:176855" misc_feature order(2018129..2018131,2018135..2018137,2018141..2018143, 2018168..2018176,2018180..2018185,2018228..2018230, 2018258..2018260,2018264..2018266,2018270..2018272, 2018276..2018278,2018309..2018311,2018315..2018317, 2018321..2018323,2018339..2018341,2018345..2018347, 2018378..2018383,2018387..2018389,2018393..2018395, 2018432..2018434,2018438..2018440,2018444..2018446, 2018450..2018452,2018483..2018497,2018501..2018509, 2018513..2018521,2018528..2018530) /locus_tag="Alide_1950" /note="putative coenzyme Q binding site [chemical binding]; other site" /db_xref="CDD:176855" gene 2018570..2018896 /locus_tag="Alide_1951" /db_xref="GeneID:10104003" CDS 2018570..2018896 /locus_tag="Alide_1951" /inference="protein motif:PFAM:PF03658" /note="PFAM: protein of unknown function UPF0125; KEGG: ajs:Ajs_2550 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126582.1" /db_xref="GI:319762645" /db_xref="InterPro:IPR005346" /db_xref="GeneID:10104003" /translation="MADMLRVTVAASLQASEVREWQLRLPAGASVADAVLACNIDVQH GRLACGIWGRAVELHERLRDGDRVECCRPLTVDPKLARRQRFASQGARAAGLFAKRRA GSKSGY" misc_feature 2018576..2018854 /locus_tag="Alide_1951" /note="Uncharacterised protein family (UPF0125); Region: UPF0125; cl01096" /db_xref="CDD:186330" gene complement(2018905..2019408) /locus_tag="Alide_1952" /db_xref="GeneID:10104004" CDS complement(2018905..2019408) /locus_tag="Alide_1952" /inference="similar to AA sequence:KEGG:Ajs_2549" /note="KEGG: ajs:Ajs_2549 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126583.1" /db_xref="GI:319762646" /db_xref="GeneID:10104004" /translation="MKPYKLVLLALACTWAIGAFAQWQWVDKDGRKVFSDRPPPQDVP EKNILKQPHTGSPSRPAAAPQATAGSDASSPAQAAPGTGKDKQLEENKAKAEAAEAAK KKAEQERQAKVRADNCARAKLVKAQLAPGRLVSHTNANGERSFMDDATRAAELSRADA VIASDCQ" sig_peptide complement(2019343..2019408) /locus_tag="Alide_1952" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" gene 2019502..2020977 /locus_tag="Alide_1953" /db_xref="GeneID:10104005" CDS 2019502..2020977 /locus_tag="Alide_1953" /EC_number="1.1.1.205" /inference="protein motif:TFAM:TIGR01302" /note="SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: dia:Dtpsy_1260 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein" /codon_start=1 /transl_table=11 /product="inosine-5'-monophosphate dehydrogenase" /protein_id="YP_004126584.1" /db_xref="GI:319762647" /db_xref="GO:0003938" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR001093" /db_xref="InterPro:IPR005990" /db_xref="InterPro:IPR015875" /db_xref="InterPro:IPR018529" /db_xref="GeneID:10104005" /translation="MRLLGKALTFDDVLLVPAYSQVLPKDTSLFTRFTRNIQLNLPLV SAAMDTVTEARLAIAIAQEGGIGVIHKNMTAQQQAAEVSRVKRHESGVVHDPVVITPE HTVLQVLELSENLGISGFPVCDGGKVVGIVTSRDVRFETRYDVKVSQIMTPREKLITV NEKDHTSPAQAKALLNKHKLERLLVVNDGFELKGLITVKDINKQTTFPNAARDSEGRL RVAAAVGVGEGTEERVAALVKAGVDAIVVDTAHGHSKGVIERVRWVKQNYPQVDVIGG NIATGAAALALVEAGADAVKVGIGPGSICTTRIVAGVGVPQIMAIDNVATALKGTGVP LIADGGIRFSGDIAKAIAAGASTIMMGGMFAGTEEAPGEVILYQGRSYKSYRGMGSIG AMQQGSADRYFQEATTGNPNADKLVPEGIEGRVPYKGSMVSIVFQMAGGVRAAMGYCG CATIAEMNDKAEFVEITAAGIRESHVHDVQITKEAPNYRAD" misc_feature 2019502..2020974 /locus_tag="Alide_1953" /note="inosine 5'-monophosphate dehydrogenase; Reviewed; Region: PRK05567" /db_xref="CDD:180134" misc_feature 2019520..>2019759 /locus_tag="Alide_1953" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature 2019778..2020110 /locus_tag="Alide_1953" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key...; Region: CBS_pair_IMPDH; cd04601" /db_xref="CDD:73101" misc_feature <2020144..2020899 /locus_tag="Alide_1953" /note="IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the...; Region: IMPDH; cd00381" /db_xref="CDD:73364" misc_feature order(2020408..2020416,2020513..2020515,2020519..2020521, 2020582..2020587,2020654..2020656,2020660..2020668, 2020756..2020761) /locus_tag="Alide_1953" /note="active site" /db_xref="CDD:73364" gene 2021051..2022667 /locus_tag="Alide_1954" /db_xref="GeneID:10104006" CDS 2021051..2022667 /locus_tag="Alide_1954" /EC_number="6.3.5.2" /inference="protein motif:TFAM:TIGR00884" /note="TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; KEGG: dac:Daci_3013 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I" /codon_start=1 /transl_table=11 /product="gmp synthase, large subunit" /protein_id="YP_004126585.1" /db_xref="GI:319762648" /db_xref="GO:0003922" /db_xref="GO:0005524" /db_xref="InterPro:IPR000991" /db_xref="InterPro:IPR001674" /db_xref="InterPro:IPR004739" /db_xref="InterPro:IPR017926" /db_xref="GeneID:10104006" /translation="MQHDKILILDFGSQVTQLIARRVREAHVYCEVHPCDVSSEWVRS FAADGRLKGVILSGSHASVYEVDDKAPEAVFELGVPVLGICYGMQTMANQLGGKVEGS HTREFGYAEVRAHGHTELLKGIEDFATPEGYGMLKVWMSHGDKVTGLPPGFKLMASTP SCPIAGMADEARRFYAVQFHPEVTHTVQGRALLERFVLGICAARPDWVMKDHIAEAVE AIRAQVGDEEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMDMF EGKLHAKVIRVDASELFLSKLAGVSEPEQKRKIIGGLFVDVFKAEAAKLKAAGGGHKG ATFLAQGTIYPDVIESGGAKSKKAVTIKSHHNVGGLPEQLGLKLLEPLRDLFKDEVRE LGVALGLPREMVYRHPFPGPGLGVRILGEVKKEYADLLRRADAIFIAELRACIDPASG KSWYDLTSQAFTVFLPVKSVGVMGDGRTYDYVVALRAVQTSDFMTADWAELPYELLKK VSGRIINEVRGINRVTYDVSSKPPATIEWE" misc_feature 2021051..2022664 /locus_tag="Alide_1954" /note="GMP synthase; Reviewed; Region: guaA; PRK00074" /db_xref="CDD:178842" misc_feature 2021066..2021641 /locus_tag="Alide_1954" /note="Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase; Region: GATase1_GMP_Synthase; cd01742" /db_xref="CDD:153213" misc_feature order(2021087..2021092,2021222..2021230,2021303..2021308, 2021471..2021473,2021588..2021590) /locus_tag="Alide_1954" /note="AMP/PPi binding site [chemical binding]; other site" /db_xref="CDD:153213" misc_feature order(2021225..2021227,2021306..2021308) /locus_tag="Alide_1954" /note="candidate oxyanion hole; other site" /db_xref="CDD:153213" misc_feature order(2021303..2021305,2021588..2021590,2021594..2021596) /locus_tag="Alide_1954" /note="catalytic triad [active]" /db_xref="CDD:153213" misc_feature order(2021315..2021317,2021474..2021476,2021582..2021584) /locus_tag="Alide_1954" /note="potential glutamine specificity residues [chemical binding]; other site" /db_xref="CDD:153213" misc_feature 2021735..2022661 /locus_tag="Alide_1954" /note="The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched...; Region: GMP_synthase_C; cd01997" /db_xref="CDD:30184" misc_feature order(2021735..2021806,2021810..2021842,2021846..2021878, 2021909..2022022,2022059..2022106,2022134..2022163, 2022176..2022250,2022266..2022310) /locus_tag="Alide_1954" /note="ATP Binding subdomain [chemical binding]; other site" /db_xref="CDD:30184" misc_feature order(2021744..2021752,2021756..2021767,2021819..2021821, 2021825..2021827,2022209..2022211) /locus_tag="Alide_1954" /note="Ligand Binding sites [chemical binding]; other site" /db_xref="CDD:30184" misc_feature order(2022335..2022373,2022419..2022448,2022455..2022487, 2022497..2022544,2022563..2022589,2022593..2022661) /locus_tag="Alide_1954" /note="Dimerization subdomain; other site" /db_xref="CDD:30184" gene 2022969..2023991 /locus_tag="Alide_1955" /db_xref="GeneID:10104007" CDS 2022969..2023991 /locus_tag="Alide_1955" /inference="protein motif:PFAM:PF00589" /note="PFAM: integrase family protein; KEGG: bam:Bamb_2021 phage integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004126586.1" /db_xref="GI:319762649" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10104007" /translation="MLTDTALRNLKPKSLTYKVSDRDGMYVTVSPAGTITFRYDYRLH GRRETLTIGRYGALGISLALAREKLLDAKKAVMAGRSPALEKQREKRRLTAAKNFGDL ALKWLADAKMADSTRAMRKHVVDRDILPVFQNRLLNEITADDLRALCNRVKARGAPAT AVHVRDIVKQIYAFAILHGEKVDNPANDVAAASIATFVPKDRALSPTEIRLAFHQLES IATYPTIRLALRMVLLTLVRKSELIEATWSEIDFENATWTIPKQRMKGRNPHVVYLSR QALDMHNCAGPAGLQHLPIHVVTQTKKPAGNWCLRACKRLNPLQAACAKAGAGRIRAR RGAASR" misc_feature 2023044..>2023811 /locus_tag="Alide_1955" /note="Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801" /db_xref="CDD:29502" gene complement(2023960..2025255) /locus_tag="Alide_1956" /db_xref="GeneID:10104008" CDS complement(2023960..2025255) /locus_tag="Alide_1956" /inference="protein motif:TFAM:TIGR01798" /note="KEGG: dia:Dtpsy_2288 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase" /codon_start=1 /transl_table=11 /product="citrate synthase i" /protein_id="YP_004126587.1" /db_xref="GI:319762650" /db_xref="GO:0004108" /db_xref="InterPro:IPR002020" /db_xref="InterPro:IPR010953" /db_xref="InterPro:IPR019810" /db_xref="GeneID:10104008" /translation="MKLADNKATLSFSNGSPSVELPVYQGSIGPDVIDIRKLYGQTGM FTYDPGFLSTASCQSAITYIDGDKGELLYRGYPIEQLATKCDYLDTCYLLLNGELPNA GQRDDFHKLVLKHTMVHEQMQFFLRGFRRDAHPMAVLTGLIGALSAFYHDSTDINNPE HRHISAIRLISKLPTLVAMAYKYGVGQPFMYPRNELSYAGNFLRMMFGTPCEDYKVNP VIERAMDRIFILHADHEQNASTSTVRLCGSSGTNPFAAIAAGVACLWGPAHGGANEAC LNMLEHLQANGGVAKVGEFMEQVKDKNSGVKLMGFGHRVYKNYDPRAKLMQETCNEVL AELGLEKDPLFALAKQLEKIALEDDYFVQRKLYPNVDFYSGIVQRAIGIPVNLFTGIF ALARTVGWIAQLNEMIGDPEYKIGRPRQLFTGSPRRDVP" misc_feature complement(2023984..2025195) /locus_tag="Alide_1956" /note="Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS...; Region: EcCS_like; cd06114" /db_xref="CDD:99867" misc_feature complement(order(2023984..2024010,2024014..2024016, 2024311..2024316,2024437..2024442,2024446..2024463, 2024467..2024472,2024491..2024493,2024500..2024511, 2024518..2024520,2024530..2024535,2024542..2024556, 2024809..2024817,2024824..2024826,2024833..2024835, 2024845..2024847,2024857..2024859,2024869..2024877, 2024881..2024886,2024893..2024895,2024926..2024931, 2024938..2024943,2024950..2024952,2024956..2024967, 2024989..2024991,2025004..2025006,2025016..2025018, 2025025..2025036,2025070..2025072,2025076..2025126)) /locus_tag="Alide_1956" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99867" misc_feature complement(2024002..2025108) /locus_tag="Alide_1956" /note="Citrate synthase; Region: Citrate_synt; pfam00285" /db_xref="CDD:189486" misc_feature complement(order(2024005..2024007,2024014..2024016, 2024068..2024070,2024080..2024082,2024143..2024145, 2024149..2024151,2024158..2024160,2024164..2024166, 2024290..2024292,2024305..2024307,2024314..2024337, 2024431..2024433,2024440..2024442,2024446..2024454, 2024545..2024547,2024554..2024556,2025100..2025102)) /locus_tag="Alide_1956" /note="active site" /db_xref="CDD:99867" misc_feature complement(order(2024068..2024070,2024149..2024151, 2024290..2024292,2024314..2024328,2024332..2024337, 2024449..2024454,2024545..2024547,2024554..2024556, 2025100..2025102)) /locus_tag="Alide_1956" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(2024674..2024676,2024740..2024742, 2024752..2024754,2024806..2024808,2024899..2024919, 2024923..2024925)) /locus_tag="Alide_1956" /note="NADH binding [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(2024626..2024631,2024671..2024709, 2024860..2024877,2024884..2024910)) /locus_tag="Alide_1956" /note="cationic pore residues; other site" /db_xref="CDD:99867" misc_feature complement(order(2024005..2024007,2024068..2024070, 2024080..2024082,2024143..2024145,2024290..2024292, 2024317..2024319,2024446..2024451,2024545..2024547, 2024554..2024556)) /locus_tag="Alide_1956" /note="oxalacetate/citrate binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(2024014..2024016,2024143..2024145, 2024149..2024151,2024158..2024160,2024164..2024166, 2024305..2024307,2024314..2024316,2024320..2024337, 2024431..2024433,2024440..2024442,2024449..2024454)) /locus_tag="Alide_1956" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(2024143..2024145,2024317..2024319, 2024449..2024451)) /locus_tag="Alide_1956" /note="catalytic triad [active]" /db_xref="CDD:99867" gene complement(2025302..2025574) /locus_tag="Alide_1957" /db_xref="GeneID:10104009" CDS complement(2025302..2025574) /locus_tag="Alide_1957" /inference="protein motif:PFAM:PF03937" /note="PFAM: protein of unknown function DUF339; KEGG: ajs:Ajs_2797 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126588.1" /db_xref="GI:319762651" /db_xref="InterPro:IPR005631" /db_xref="GeneID:10104009" /translation="MTDDALLDARDVAVLRWRSRRGLVENDLFIERFFERHGANLTVG QGRAVTMLMNLPDNDLLDLLLRRKEPEGEIDTDQVRAVLEQMRQRA" misc_feature complement(<2025440..2025526) /locus_tag="Alide_1957" /note="Flavinator of succinate dehydrogenase; Region: Sdh5; cl01110" /db_xref="CDD:186339" gene complement(2025595..2026299) /locus_tag="Alide_1958" /db_xref="GeneID:10104010" CDS complement(2025595..2026299) /locus_tag="Alide_1958" /EC_number="1.3.5.1" /inference="protein motif:TFAM:TIGR00384" /note="TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: dac:Daci_2424 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase and fumarate reductase iron-sulfur protein" /protein_id="YP_004126589.1" /db_xref="GI:319762652" /db_xref="GO:0016491" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR004489" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="GeneID:10104010" /translation="MQRTFKIYRYDPDKDAKPYMQTLQVELDGHERMLLDALLKLKKQ DPSLSFRRSCREGVCGSDAMNINGKNGLACLTNMKTLQGDIVLKPLPGLPVIRDLIVD MTQFFNQYHSIKPYLQNDEPTSPSKERLQSPEEREELDGLYECILCASCSTSCPSFWW NPDKFVGPAGLLQAYRFIADSRDKATGERLDNLEDPYRLFRCHTIMNCVDVCPKGLKP AAAISKIKELMVRRAI" misc_feature complement(2025598..2026290) /locus_tag="Alide_1958" /note="succinate dehydrogenase iron-sulfur subunit; Reviewed; Region: sdhB; PRK05950" /db_xref="CDD:180322" gene complement(2026328..2028133) /locus_tag="Alide_1959" /db_xref="GeneID:10104011" CDS complement(2026328..2028133) /locus_tag="Alide_1959" /inference="protein motif:TFAM:TIGR01816" /note="KEGG: dia:Dtpsy_2285 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, flavoprotein subunit" /protein_id="YP_004126590.1" /db_xref="GI:319762653" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR003952" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004112" /db_xref="InterPro:IPR011281" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR014006" /db_xref="GeneID:10104011" /translation="MSYTKKDIAVRKFDVVIVGAGGSGMRASLELSRAGLSVACLSKV FPTRSHTVAAQGGVSASLGNMSEDNWHYHFYDTIKGGDWLSDQDAVEFMCREAPNVVI ELEHFGMPFDRNPDGTIYQRPFGGHTANYGEKPVQRACAAADRTGHAMLHTLYQKNVE SKTNFFVEWMALDLIRNSAGDVVGVTALELETGDLYELHAKAVLLATGGAGRIFAAST NAFINTGDGLGMAARAGIPLQDLEFWQFHPTGVAGAGVLLTEGCRGEGAILLNSNGER FMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNKDYILMKLDHLGADTIRKRLPSV EEIGHNFANVDITKEPIPVVPTIHYQMGGIPTNVHGQVVVWDGEKNNVVNGLYAVGEC AAVSVHGANRLGTNSLLDLLVFGKSAGKHIVEFVKGFGDHHAVPADASDRTLARLNQL EDSKDGVYAQDLANDIRQTMQSHAGVFRTQKGMDEGVEKIAAIRERVSSIGLKDKSKV WNTARMEALEVDNLIEVAQATMVSAAARKECRGAHTVDDYEHPADHPTAPLGRDDVNW LKHTLWHSQTNSLTYKPVNMKPLTVDSIPPKVRTF" misc_feature complement(2026331..2028133) /locus_tag="Alide_1959" /note="succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK07057" /db_xref="CDD:180814" misc_feature complement(2026868..2028094) /locus_tag="Alide_1959" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(2026331..2026744) /locus_tag="Alide_1959" /note="domain; Region: Succ_DH_flav_C; pfam02910" /db_xref="CDD:190472" gene complement(2028184..2028549) /locus_tag="Alide_1960" /db_xref="GeneID:10104012" CDS complement(2028184..2028549) /locus_tag="Alide_1960" /inference="protein motif:TFAM:TIGR02968" /note="TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: aav:Aave_2203 succinate dehydrogenase subunit D" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, hydrophobic membrane anchor protein" /protein_id="YP_004126591.1" /db_xref="GI:319762654" /db_xref="InterPro:IPR014312" /db_xref="GeneID:10104012" /translation="MSATYGYKRTVVGAHYGWRDFLVQRITAVLIGVFTLLVLCKLLF TSGPIGYDTWAGIFAPQWMKALTFSVIVAVIWHAWVGVCSVWYDYAKPAGLRLVLQAL SIIWLVSCGGWAVQVLWRL" misc_feature complement(2028193..2028492) /locus_tag="Alide_1960" /note="Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the...; Region: SQR_TypeC_SdhD; cd03494" /db_xref="CDD:48055" misc_feature complement(order(2028211..2028213,2028220..2028222, 2028286..2028288,2028388..2028390,2028397..2028399, 2028475..2028477)) /locus_tag="Alide_1960" /note="SdhC subunit interface [polypeptide binding]; other site" /db_xref="CDD:48055" misc_feature complement(order(2028307..2028309,2028319..2028321, 2028328..2028330,2028454..2028456,2028466..2028468)) /locus_tag="Alide_1960" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:48055" misc_feature complement(order(2028403..2028405,2028412..2028414, 2028424..2028426)) /locus_tag="Alide_1960" /note="cardiolipin binding site; other site" /db_xref="CDD:48055" misc_feature complement(order(2028277..2028279,2028286..2028291, 2028298..2028300)) /locus_tag="Alide_1960" /note="Iron-sulfur protein interface; other site" /db_xref="CDD:48055" misc_feature complement(2028283..2028285) /locus_tag="Alide_1960" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:48055" gene complement(2028574..2029005) /locus_tag="Alide_1961" /db_xref="GeneID:10104013" CDS complement(2028574..2029005) /locus_tag="Alide_1961" /inference="protein motif:TFAM:TIGR02970" /note="KEGG: dia:Dtpsy_2283 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, cytochrome b556 subunit" /protein_id="YP_004126592.1" /db_xref="GI:319762655" /db_xref="InterPro:IPR000701" /db_xref="InterPro:IPR014314" /db_xref="InterPro:IPR014361" /db_xref="GeneID:10104013" /translation="MTQLAKKRPEFRNIHAFKDLPSYRWPLAALVSGMHRISGLILFL LLPFIIWLFDKSVSSEISFGSFTAAFTTGIGFVPAWFVKLVVLALIWSYLHHLAAGVR HLVLDVTHKTTKDFGRHSAAATLVFSIMLTVILGAKLFGLY" misc_feature complement(2028595..2028951) /locus_tag="Alide_1961" /note="Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the...; Region: SQR_TypeC_SdhC; cd03499" /db_xref="CDD:48060" misc_feature complement(order(2028682..2028684,2028688..2028690, 2028697..2028699,2028898..2028900,2028919..2028921, 2028928..2028930,2028934..2028942)) /locus_tag="Alide_1961" /note="Iron-sulfur protein interface; other site" /db_xref="CDD:48060" misc_feature complement(order(2028898..2028900,2028907..2028912, 2028931..2028933)) /locus_tag="Alide_1961" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:48060" misc_feature complement(order(2028601..2028603,2028685..2028687, 2028748..2028750,2028817..2028819,2028844..2028849, 2028856..2028858,2028865..2028867,2028898..2028900)) /locus_tag="Alide_1961" /note="SdhD (CybS) interface [polypeptide binding]; other site" /db_xref="CDD:48060" misc_feature complement(order(2028715..2028720,2028877..2028882, 2028898..2028900)) /locus_tag="Alide_1961" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:48060" gene complement(2029156..2029947) /locus_tag="Alide_1962" /db_xref="GeneID:10104014" CDS complement(2029156..2029947) /locus_tag="Alide_1962" /inference="protein motif:PFAM:PF07702" /note="KEGG: dia:Dtpsy_2282 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH" /codon_start=1 /transl_table=11 /product="ubic transcription regulator-associated domain-containing protein" /protein_id="YP_004126593.1" /db_xref="GI:319762656" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0030528" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:10104014" /translation="MPPPPPPSTEDPPSMSGSVGSVTPAFSPLYQQIKGLILHSLQHG EWKPGEAIPSEIELAARFRVSQGTVRKAIDELAAENLVTRRQGKGTFVSTHTERQVQY RFLKLLPDEGDASVEGPAQRTILECRRARASVEVARILALRAGDPVIQIKRILSFTGV PTILEDIWLPGQAFKGLTAEQMAHYQGPTYAMFEIDFGVRMVRAEEKIRAVLPDETQA QWLNVTCSTPLLSVERLAYTYNDAPMELRRGLYRTDTHHYYNELS" misc_feature complement(2029162..2029881) /locus_tag="Alide_1962" /note="Transcriptional regulators [Transcription]; Region: PhnF; COG2188" /db_xref="CDD:32371" misc_feature complement(2029669..2029866) /locus_tag="Alide_1962" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(2029678..2029689,2029693..2029698, 2029726..2029728,2029735..2029740,2029744..2029758, 2029780..2029785,2029789..2029791,2029858..2029860, 2029864..2029866)) /locus_tag="Alide_1962" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(2029180..2029590) /locus_tag="Alide_1962" /note="UTRA domain; Region: UTRA; cl06649" /db_xref="CDD:195338" gene 2030130..2031116 /locus_tag="Alide_1963" /db_xref="GeneID:10104015" CDS 2030130..2031116 /locus_tag="Alide_1963" /inference="protein motif:TFAM:TIGR01759" /note="KEGG: dia:Dtpsy_2281 malate dehydrogenase; TIGRFAM: malate dehydrogenase; PFAM: Lactate/malate dehydrogenase" /codon_start=1 /transl_table=11 /product="malate dehydrogenase" /protein_id="YP_004126594.1" /db_xref="GI:319762657" /db_xref="GO:0016615" /db_xref="InterPro:IPR001236" /db_xref="InterPro:IPR001557" /db_xref="InterPro:IPR010945" /db_xref="GeneID:10104015" /translation="MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEI PDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERA DLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLR LDHNRAASQIAAKIGCSVGDIEKLCVWGNHSPTMYADYRFATVDGKSVKDAINDHDWN ANVFLPTVGKRGAAIIAARGLSSAASAANAAIDHMRDWALGTNGKWVTMGIPSNGEYG IPKDVMFGYPVTTEGGKYKIVEGLPIDAFSQECINKTLAELQGEQDGVKHLL" misc_feature 2030133..2031113 /locus_tag="Alide_1963" /note="malate dehydrogenase; Provisional; Region: PRK05442" /db_xref="CDD:180084" misc_feature 2030139..2031107 /locus_tag="Alide_1963" /note="Chloroplast-like malate dehydrogenases; Region: MDH_choloroplast_like; cd01338" /db_xref="CDD:133423" misc_feature order(2030163..2030165,2030172..2030180,2030256..2030261, 2030403..2030405,2030523..2030525,2030529..2030531, 2030601..2030603,2030697..2030699) /locus_tag="Alide_1963" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133423" misc_feature order(2030184..2030186,2030196..2030201,2030208..2030210, 2030214..2030216,2030280..2030285,2030292..2030294, 2030301..2030306,2030310..2030318,2030619..2030624, 2030631..2030633,2030643..2030645,2030814..2030816, 2030832..2030840,2030850..2030861,2030868..2030870) /locus_tag="Alide_1963" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133423" misc_feature order(2030412..2030414,2030430..2030432,2030613..2030615, 2030622..2030624,2030697..2030699,2030850..2030852) /locus_tag="Alide_1963" /note="malate binding site [chemical binding]; other site" /db_xref="CDD:133423" gene 2031129..2031920 /locus_tag="Alide_1964" /db_xref="GeneID:10104016" CDS 2031129..2031920 /locus_tag="Alide_1964" /EC_number="2.1.1.144" /inference="protein motif:PRIAM:2.1.1.144" /note="KEGG: dac:Daci_2430 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 12" /codon_start=1 /transl_table=11 /product="trans-aconitate 2-methyltransferase" /protein_id="YP_004126595.1" /db_xref="GI:319762658" /db_xref="InterPro:IPR013217" /db_xref="GeneID:10104016" /translation="MLDWNPALYLRFAAERTRPAAELLARVPLAQARHVVDLGCGPGN STELLAQRFPEACITGIDNSQAMLAAARQRLPQAGFALADIATWTPNSGDAPDLIYAN AALQWVGAHETLLPRLFALLAPGGVLAVQMPDNLDEPTHRLMREVAGLPRFACHIGDA ARVRTGILPVGSYYDLLAAPEAGAASVDIWHTVYQHPMDSAGAIVQWLQGTGLKPFVE GLEPALRDGFLAEYKRRVDAAYGMRADGRRLLAFPRLFIVAQRQS" misc_feature 2031129..2031917 /locus_tag="Alide_1964" /note="trans-aconitate 2-methyltransferase; Provisional; Region: PRK01683" /db_xref="CDD:179319" misc_feature 2031231..2031521 /locus_tag="Alide_1964" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2031240..2031260,2031312..2031317,2031375..2031383, 2031432..2031434) /locus_tag="Alide_1964" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 2032128..2032772 /locus_tag="Alide_1965" /db_xref="GeneID:10104017" CDS 2032128..2032772 /locus_tag="Alide_1965" /inference="similar to AA sequence:KEGG:Dtpsy_2278" /note="KEGG: dia:Dtpsy_2278 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126596.1" /db_xref="GI:319762659" /db_xref="GeneID:10104017" /translation="MKTLIASALLLAAPAWALAQTAPQPAGKPAAQAEAKKSASKAST KPAAAKSAAAKSNKAAGEAHRAVAKASPTSSRTQLHSGAMQVAAGISAAETALTPQEL AIAENVYTGRMACELGAFVEVEADAQSPGRFYVHGKGFRYHMSPVVSVTSAVRLEDQR AGAVWIQIANKSMLMNQKLGQRMADECMSPQQVTVAEAIRKNPPPSLLETPAAK" sig_peptide 2032128..2032187 /locus_tag="Alide_1965" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.608 at residue 20" gene 2032890..2035481 /locus_tag="Alide_1966" /db_xref="GeneID:10104018" CDS 2032890..2035481 /locus_tag="Alide_1966" /inference="protein motif:TFAM:TIGR00117" /note="KEGG: ajs:Ajs_2787 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B; aconitate hydratase domain-containing protein" /codon_start=1 /transl_table=11 /product="aconitate hydratase 2" /protein_id="YP_004126597.1" /db_xref="GI:319762660" /db_xref="GO:0003994" /db_xref="GO:0005515" /db_xref="InterPro:IPR001030" /db_xref="InterPro:IPR004406" /db_xref="InterPro:IPR015929" /db_xref="InterPro:IPR018136" /db_xref="GeneID:10104018" /translation="MLQAYRDHVAERAALGIPPLPLDAKQVAELIELIKNPPAGEAEF LLDLLTHRVPPGVDDAAKVKASFLAAVAHGDIQVGLISKARATELLGTMVGGYNVHPL IELLDDAEVAGVAAEALKKTLLMFDYFNDVAARAKAGNAKAQEVMQSWADAEWFTSRP EVEKKITVTVFKVPGETNTDDLSPAPDATTRPDIPLHYLAMLKNTRPDAAFKPEQDGV RGPMQFIEDLKKKGHLVAYVGDVVGTGSSRKSATNSVIWATGQDIPYVPNKRFGGVTL GGKIAPIFFNTQEDSGALPIEVDVSKMEMGDVVDIFPYEGRIEKNGEKIADFQLKSDV LLDEVRAGGRINLIIGRSLTAKARETLGLPASTAFRLPQAPAESKAGFTLAQKMVGRA CGLPEGQGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDLACLGFSADMVMQSFCHTAA YPKPVDVKTHRELPAFISNRGGVALRPGDGVIHSWLNRLLLPDTVGTGGDSHTRFPIG ISFPAGSGLVAFGAATGVMPLDMPESVLVRFKGELQPGVTLRDLVHAIPLYAIKAGLL TVAKAGKKNIFSGKILEIEGLPDLKVEQAFELSDASAERSAAGCTIKLNPEPIKEYLR SNIVLMKNMIADGYQDAKTLQRRIEKVEAWLAKPELLEADKDAEYAAVIEIDMNEIKE PIVCCPNDPDDAKFLSEVAGTKIDEAFIGSCMTNIGHFRAAAKLLGGQRDIPVKLWVA PPTKMDQNELIKEGHYAAFGTAGARTEMPGCSLCMGNQAQVREGATVISTSTRNFPNR LGKNTNVFLGSAELAAIASRLGKLPTREEYLKEMGVIDADKASVYRYMNFDQIEEYAE VAKGVTA" misc_feature 2032890..2035433 /locus_tag="Alide_1966" /note="bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated; Region: PRK09238" /db_xref="CDD:181718" misc_feature 2033400..2033828 /locus_tag="Alide_1966" /note="Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change...; Region: AcnB_Swivel; cd01576" /db_xref="CDD:29525" misc_feature 2033625..2033633 /locus_tag="Alide_1966" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29525" misc_feature 2034039..2035355 /locus_tag="Alide_1966" /note="Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle; Region: AcnB; cd01581" /db_xref="CDD:153131" misc_feature order(2034138..2034140,2034147..2034149,2034387..2034392, 2035212..2035214,2035266..2035268,2035281..2035283) /locus_tag="Alide_1966" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153131" misc_feature order(2034393..2034395,2035026..2035028,2035200..2035202, 2035209..2035214,2035263..2035265) /locus_tag="Alide_1966" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153131" gene 2035587..2035662 /locus_tag="Alide_R0030" /note="tRNA-Ala3" /db_xref="GeneID:10104019" tRNA 2035587..2035662 /locus_tag="Alide_R0030" /product="tRNA-Ala" /db_xref="GeneID:10104019" gene complement(2035701..2036594) /locus_tag="Alide_1967" /db_xref="GeneID:10104020" CDS complement(2035701..2036594) /locus_tag="Alide_1967" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_3364 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126598.1" /db_xref="GI:319762661" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10104020" /translation="MELRLLHYFATLAEELHFGRAAQRLCISQPPLSVAIKQLEQELQ AQLFERSSKGVRLTAAGEHLLGKARQLLALSHQAAQETRDVAQGTRGHLRLGFVGSSL YRGLPQALAQLQLSHPQVRVDMLEANSAEQILGLQQMRLDVALVHSIQPPEGISSQLI VEEPFVVCLPDHHPLCDGESIDLAELRDDRLILFSNLVSPTYHQRIYEMCLAHGFAPE VRHEVRHWLSVISLVSLGQGVALVPAALERVGLPRLVFRPLLGEHPRSEMLAMWRSAP ANPLVQTLLAHLQQAAQMLDI" misc_feature complement(2035758..2036588) /locus_tag="Alide_1967" /note="DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986" /db_xref="CDD:182183" misc_feature complement(2036409..2036588) /locus_tag="Alide_1967" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2035758..2036321) /locus_tag="Alide_1967" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(2035890..2035895,2035899..2035904, 2035920..2035937,2036217..2036237,2036241..2036243, 2036253..2036255,2036262..2036267,2036271..2036276)) /locus_tag="Alide_1967" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 2036701..2038407 /locus_tag="Alide_1968" /db_xref="GeneID:10104021" CDS 2036701..2038407 /locus_tag="Alide_1968" /inference="protein motif:PFAM:PF02770" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ctt:CtCNB1_3363 acyl-CoA dehydrogenase-like protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004126599.1" /db_xref="GI:319762662" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="GeneID:10104021" /translation="MSANDQTQMTALAQASAAAHPVPDRGHVNYYTGDGELQSLLALY LPADLHAHLQPYFERMGELAGGAVDDWAQEADRNPPTLEMRSRAGKEQQRIVKHPAYV EMEKVAFQQFGLAAISHREDMLGWKGKMPPIVKYALTYLFVQSEFGLCCPLSMTDSLT RTLKKYGAPELVNKYLPRLLAMDFDSSVQGSMFMTEQAAGSDIANTLTMAYPQEDGSW RLYGEKWFCSNPDAGFSMVLARVDGGPPGMKGISLFLLPRIKDDGSTNHYHIVRLKDK MGTRSMASGEIRMEGAVAYLVGEQGRGFVQIADMVNNSRLSNGMRSAGMMRRAVAEAE FIARERWAFGRRLQDLPLMRVQLDKLRVPAEQARTMVFQTAATLARSDAGDKSAYALL RILTPMIKFRACRDARKVAGDAMEVRGGCGYIEEWADPRLVRDAHLGSIWEGTSNIVA LDVVRAIKREGSLPVLNDYLHGLLADTAAITPAYRQALGDALARAAKLAERAAAEGGE KLARQAASGLYHCTTAIAMAWEAGKTGSSERLRLSQLVLAHRVLPRDPLAEAAVPADW RQ" misc_feature 2036791..2038077 /locus_tag="Alide_1968" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature 2036959..2038071 /locus_tag="Alide_1968" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature order(2037172..2037174,2037274..2037276,2037280..2037282, 2037376..2037378,2037382..2037384,2038021..2038029, 2038033..2038035,2038039..2038041) /locus_tag="Alide_1968" /note="active site" /db_xref="CDD:173838" gene 2038514..2039506 /locus_tag="Alide_1969" /db_xref="GeneID:10104022" CDS 2038514..2039506 /locus_tag="Alide_1969" /inference="similar to AA sequence:KEGG:CtCNB1_3361" /note="KEGG: ctt:CtCNB1_3361 AccB" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126600.1" /db_xref="GI:319762663" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104022" /translation="MTMTKRSLLGLIAGAAMLAALPVQAQDKFPDRPIMFVVPFPPGG PTDAMARILATELTRELGQAVVVENRAGAGGNIGADFVARANPDGYTIMFGTSGPLAI NHSLYKGLKYDPRISFEPVIYVGYLPNVLVVRPGLGVNSVQELIAKEKAKPGTLNYAS SGNGASSHLAGVLFNGMAGTQLVHVPYKGTGPALNDLLAGQVDMTFTDILTAMPYIKS DKVKALGVATAKRSSAMPDIPTIAEQGGKELKGYDVSVFFGVVAPKGTPADRVKLLNQ AFTRALATDKVRQTFAAQGLEASPDHSPAYLGRFIKAEVDKWAKVVQQSGVQLD" sig_peptide 2038514..2038591 /locus_tag="Alide_1969" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 26" misc_feature 2038577..2039497 /locus_tag="Alide_1969" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 2038658..2039491 /locus_tag="Alide_1969" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2039513..2040673 /locus_tag="Alide_1970" /db_xref="GeneID:10104023" CDS 2039513..2040673 /locus_tag="Alide_1970" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ctt:CtCNB1_3358 L-carnitine dehydratase/bile acid-inducible" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004126601.1" /db_xref="GI:319762664" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10104023" /translation="MNFMTQGQDPRQAASKAGALAGIKVLDLSRILGGPLCGQILGDH GADVLKVEPPQGDDTRAWGPPFNKDGVASYYFGLNRNKRIQFLDLSAPDGQQRVRELM ARADVVVENFKAGTMEKWGIGYEQVRHEFPHLVWCRVTGFGTDGPLGALPGYDAAIQA MAGLMSINGDAQGDPLRVGLPVVDMVTGMNAAIGVLLALHERARSGQGQLVDAALYDS GLSLLHPHAANWFMSGKVPGRTGNAHPNIYPYDVVHTGGAPIFLAVGNDRQFALLCDY IGQGALAQDERFATAGQRSVNRHELKPLLTQAFADRDGQELADALMAIGVPAAPVLDV AQALRHPHTAHREMVVAMDGGYQGLGAPVKLSRTPASYRLAPLSEGQDFLHD" misc_feature 2039555..2040658 /locus_tag="Alide_1970" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(2040684..2042033) /locus_tag="Alide_1971" /db_xref="GeneID:10104024" CDS complement(2040684..2042033) /locus_tag="Alide_1971" /inference="protein motif:TFAM:TIGR01421" /note="KEGG: dac:Daci_2356 glutathione-disulfide reductase; TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region" /codon_start=1 /transl_table=11 /product="glutathione-disulfide reductase" /protein_id="YP_004126602.1" /db_xref="GI:319762665" /db_xref="GO:0004362" /db_xref="GO:0050660" /db_xref="GO:0050661" /db_xref="InterPro:IPR000815" /db_xref="InterPro:IPR004099" /db_xref="InterPro:IPR006322" /db_xref="InterPro:IPR012999" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10104024" /translation="MKHYDYIVIGGGSGGIASANRAAMHGRRCALIEAGELGGTCVNV GCVPKKVMWHAAQIADAIRQYGPDYGFDATINRFDWDTLVRNRGAYIGRIHASYAAGL EKNKVDVIRGFARFVDARTIEVGGERLTAGHILIATGGHPVRPDIPGAEHGLDSDGFF ALPALPRRTAVVGAGYIAVELAGVLNALGSQTHLFVRKHAPLRNFDPLLSDTLVEAMR AEGPQLHTHASPTALRKNADGSLTLELGNGERHTTDCVIWAIGRAPHTAGLRPEAAGV MLDERGYVRVDKYQDTNVPGIHAVGDVTGQVELTPVAVAAGRRLAERLFNGRPDAHLD YGNIPSVVFSHPPIGTVGLTEPEAREQYGDDAVRVYQSAFTAMYSAVTRHRQSARMKL VCVGPDERIVGIHGIGHGMDEILQGFAVALKMGATKRDFDDTVAIHPTAAEEFVTMR" misc_feature complement(2040687..2042033) /locus_tag="Alide_1971" /note="glutathione reductase; Validated; Region: PRK06116" /db_xref="CDD:180410" misc_feature complement(2041290..2041532) /locus_tag="Alide_1971" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(2040687..2041022) /locus_tag="Alide_1971" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene 2042201..2042668 /locus_tag="Alide_1972" /db_xref="GeneID:10104025" CDS 2042201..2042668 /locus_tag="Alide_1972" /inference="protein motif:PFAM:PF01799" /note="PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: vei:Veis_4544 2Fe-2S iron-sulfur cluster binding domain-containing protein" /codon_start=1 /transl_table=11 /product="(2fe-2S)-binding domain-containing protein" /protein_id="YP_004126603.1" /db_xref="GI:319762666" /db_xref="GO:0009055" /db_xref="GO:0016491" /db_xref="GO:0046872" /db_xref="GO:0051536" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR002888" /db_xref="InterPro:IPR006058" /db_xref="GeneID:10104025" /translation="MQIQLKVNGRAITADVPPNTLLVQFLREHLRLTGTHQGCDTAQC GACTVIADGRSIKACNALAVQMQGADITTIEGLAAADGTLHPMQAAFKECHGLQCGFC TPGMVMSAVDLLAHNPRASEAEIREQLEGNICRCTGYQNIVHAVQTAQKALAA" misc_feature 2042201..2042665 /locus_tag="Alide_1972" /note="Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080" /db_xref="CDD:32263" misc_feature 2042417..2042641 /locus_tag="Alide_1972" /note="[2Fe-2S] binding domain; Region: Fer2_2; pfam01799" /db_xref="CDD:190116" gene 2042702..2045074 /locus_tag="Alide_1973" /db_xref="GeneID:10104026" CDS 2042702..2045074 /locus_tag="Alide_1973" /inference="protein motif:PFAM:PF02738" /note="PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: vap:Vapar_1594 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding" /codon_start=1 /transl_table=11 /product="aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein" /protein_id="YP_004126604.1" /db_xref="GI:319762667" /db_xref="GO:0016491" /db_xref="InterPro:IPR000674" /db_xref="InterPro:IPR008274" /db_xref="InterPro:IPR017441" /db_xref="GeneID:10104026" /translation="MGATEFAKLPHIGESVKRKEDLRFLTGAGNYTDDIVQPGQKYAV FVRSPYAHANIKSVDTAAAAAMPGVAAVFTGKDIEGKVNGLPCGWLISNPDGSPMKEP PHPVLASTKVRYVGDHVAMVVADTLEQAKNAAEAVAVDYEELAPVIDMRTASQGPALH AEAPDNHCYKWTLGDKAAVDAAFAGAAHVTAIDLTNNRLIPNAMEPRAANASYNRATD EYQLYVANQNPHVERLLMTAFVLGLPEHKVRVIAPDVGGGFGSKIFLYAEDVALTWAA RQLNCPIKWTAERSESFVSDAHGRDHISHAEMAMDKDGKFLAMRVHTHANLGAYLSTF ASAIPTILYGTLLAGQYATPQIYVEVDGWFTSTAPVDAYRGAGRPEAAYLVERLVTRC AWELGLPQDEIRKRNFIASFPYQTPVALQYDTGDFHACMNESQKLADVAGFEARRKAS EARGLRRGMGYSCYIEACGLAPSNIAGALGARAGLFEAGEVRVHPTGSVTVFTGSHSH GQGHETTFAQLVAARLGLDPGQVDIVHGDTGRVPFGMGTYGSRSLSVGGTAIMKALDK IEAKAKKIAAHLMEASDADIEFAGGEFTVKGTDKKVPFAQVALTAYVPHNYPLDKLEP GLNETAFYDPTNFTYPAGTYICEVEVDPQTGVVRVDRFTAVDDFGVIVNPMIVEGQVH GGVVQGMGQALMEHGVYDPDSGQLLTGSYMDYTMPRAADFPEFKLGHVCTPCTHNPIG SKGCGEAGAIGSPPAVINAVLDALRPLGVTDIDMPATPHRVWQAIQSAAA" misc_feature 2042759..2045053 /locus_tag="Alide_1973" /note="carbon-monoxide dehydrogenase, large subunit; Region: CO_dehy_Mo_lg; TIGR02416" /db_xref="CDD:131469" misc_feature 2042777..2043133 /locus_tag="Alide_1973" /note="Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; pfam01315" /db_xref="CDD:144787" misc_feature 2043302..2044870 /locus_tag="Alide_1973" /note="Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738" /db_xref="CDD:145733" gene 2045088..2045879 /locus_tag="Alide_1974" /db_xref="GeneID:10104027" CDS 2045088..2045879 /locus_tag="Alide_1974" /EC_number="1.2.99.2" /inference="protein motif:PRIAM:1.2.99.2" /note="KEGG: pol:Bpro_0576 molybdopterin dehydrogenase, FAD-binding; PFAM: molybdopterin dehydrogenase FAD-binding" /codon_start=1 /transl_table=11 /product="carbon-monoxide dehydrogenase (acceptor)" /protein_id="YP_004126605.1" /db_xref="GI:319762668" /db_xref="InterPro:IPR002346" /db_xref="InterPro:IPR016166" /db_xref="GeneID:10104027" /translation="MYAFTYERPTSEADALRLAQAGARPLAGGQTLLASMKLRLAAPE QIVDLGAVPELKGIRRDGDALVIGAMTRHCDVAESAEARAAIPALAALAGGIGDKQVR ARGTIGGSVANNDPAADYPAALLALGATVHTTARAIAADDFFQGLFATALEEGELITA VRFPIAAKAAYVKFAQPASLFALIGVFVAQTAQGVRVAVTGGGNGVFRHQAMEKALDA RFAPEAIAGVPTEEAGMSSDLHASSAYRAHLVGVMAQRAVARALA" misc_feature 2045088..2045876 /locus_tag="Alide_1974" /note="Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]; Region: CoxM; COG1319" /db_xref="CDD:31510" gene 2046009..2046923 /locus_tag="Alide_1975" /db_xref="GeneID:10104028" CDS 2046009..2046923 /locus_tag="Alide_1975" /inference="protein motif:PFAM:PF07728" /note="KEGG: dac:Daci_2251 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="atpase associated with various cellular activities aaa_5" /protein_id="YP_004126606.1" /db_xref="GI:319762669" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:10104028" /translation="MNASTPPCVCNSIDELAAALQAVGYFADRRLATAVFLALKLQRP LLLEGEPGVGKTELAKALAQALGRQLLRLQCFDGMEQREALYEWNYAAQLLHLRANEG TASASALEQEVYQPRYLVRRPLLQALEALEPGALLLIDEVDRADEPFEAFLLEYLGEY QVSIPELGTIRAAVPPVTILTSNRTRELNDAVKRRCLYHWLDYPGRERELAIVHALVP QAGQRLAAQVAAFVQQLRSSPYADRFQRAPGIAETVEWARALVALDTLVLDPEVVADT AGILFKQRDDVAALDAALARDVLQAAQD" misc_feature 2046078..>2046800 /locus_tag="Alide_1975" /note="MoxR-like ATPases [General function prediction only]; Region: COG0714" /db_xref="CDD:31058" gene 2046926..2048167 /locus_tag="Alide_1976" /db_xref="GeneID:10104029" CDS 2046926..2048167 /locus_tag="Alide_1976" /inference="protein motif:PFAM:PF05762" /note="PFAM: VWA containing CoxE family protein; KEGG: vei:Veis_4536 VWA containing CoxE family protein" /codon_start=1 /transl_table=11 /product="vwa containing coxe family protein" /protein_id="YP_004126607.1" /db_xref="GI:319762670" /db_xref="InterPro:IPR008912" /db_xref="InterPro:IPR011195" /db_xref="GeneID:10104029" /translation="MTISTSPATPRRASQLGDARSGKLAANLVAFGRALRRAGVPVDG ARIALAQQAIEAVGVARREDMAAALEAVLLSRAQDRAVFAELFDAFFRDPELAHKLLA QMLPRAEGHAEPPRQRPRVREALAPPKPQAQQAAGPDQAVDLDAAMTASAAQRLRHAD FNLLSASEYRLVERLVRDIPLPLPSVASRRTRGGARGARVHWARTLRRAARSGGDLVS LARLRRRRQPLPLLLLVDVSGSMERYARLLLAFLHAATARTRLDGANLRVRRDVFAFG TALTDLTPAFAQADTDAMLADAGRAIHDFAGGTRLGDSLAQLRQRHGRRLVGRRTLVL IVSDGLDTGEPGALAEELAWLGRRCRRMLWLNPLLRFDGYAPSARGAAQLHRACDGML AVHNVSKLQELAGAIAALLER" misc_feature 2046980..2048158 /locus_tag="Alide_1976" /note="Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]; Region: CoxE; COG3552" /db_xref="CDD:33354" misc_feature 2047529..2048113 /locus_tag="Alide_1976" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:197401" gene 2048181..2048732 /locus_tag="Alide_1977" /db_xref="GeneID:10104030" CDS 2048181..2048732 /locus_tag="Alide_1977" /inference="protein motif:PFAM:PF06240" /note="PFAM: carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G" /codon_start=1 /transl_table=11 /product="carbon monoxide dehydrogenase subunit g" /protein_id="YP_004126608.1" /db_xref="GI:319762671" /db_xref="InterPro:IPR010419" /db_xref="GeneID:10104030" /translation="MDMQGARQLAIGQQQAWDALNDPGVLKICIPGCDSIEATGEGAY ALVNAIKVGPVAAKFKGAIHLADVNAPHGYTLNFEGNGGVAGFGKGSARVTLTPQDEG CELAYTVHATVGGKIAQVGQRLIDGVARSMAESFFKRFDEEMQRRHGPPPEEAAEAGE KPGALKKMWSRLKGGDKPAADGD" misc_feature 2048181..2048612 /locus_tag="Alide_1977" /note="Carbon monoxide dehydrogenase subunit G (CoxG); Region: CoxG; cd05018" /db_xref="CDD:176853" misc_feature order(2048187..2048189,2048193..2048195,2048199..2048201, 2048226..2048234,2048238..2048243,2048256..2048258, 2048268..2048270,2048286..2048288,2048304..2048306, 2048310..2048312,2048316..2048318,2048322..2048324, 2048328..2048330,2048343..2048345,2048355..2048357, 2048367..2048375,2048382..2048384,2048400..2048402, 2048406..2048408,2048412..2048414,2048448..2048456, 2048460..2048462,2048466..2048468,2048493..2048495, 2048499..2048501,2048505..2048507,2048511..2048513, 2048553..2048567,2048571..2048579,2048583..2048591, 2048598..2048600) /locus_tag="Alide_1977" /note="putative hydrophobic ligand binding site [chemical binding]; other site" /db_xref="CDD:176853" gene 2048742..2049782 /locus_tag="Alide_1978" /db_xref="GeneID:10104031" CDS 2048742..2049782 /locus_tag="Alide_1978" /inference="protein motif:PFAM:PF02625" /note="PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_0572 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126609.1" /db_xref="GI:319762672" /db_xref="InterPro:IPR003777" /db_xref="GeneID:10104031" /translation="MENIDVTVLRALRDWRQAGHGAILVTVVRTWGSSPRPVGSIMAL RADGAVTGSVSGGCIEDDMIARYTQPGVADALPHAGPPQFAKYGVTADEAHRFGLPCG GTLELLIEFDPDAASLAALVDRLDAGQLVQRSVRLADGGVALTPAQAPAELVLDAQQL VNTFGPEYRMLIIGAGQMSEYLATMALFCGFAVTVCDPREEYRSGFAVPGARLLATMP DDTVAAFAPDARSCVVALTHDPKLDDLALLQALETPAFYIGAIGSRRNNQARRQRMIE HLGQTGESLARLRGPVGIYIGSKTPPEIAVSIMAEVLAVKNGVALPPGVDVAHVKDSQ GLAGPGSACLAD" misc_feature 2048763..2049728 /locus_tag="Alide_1978" /note="Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]; Region: XdhC; COG1975" /db_xref="CDD:32158" misc_feature 2048805..2049005 /locus_tag="Alide_1978" /note="XdhC and CoxI family; Region: XdhC_CoxI; pfam02625" /db_xref="CDD:190370" gene 2049782..2050429 /locus_tag="Alide_1979" /db_xref="GeneID:10104032" CDS 2049782..2050429 /locus_tag="Alide_1979" /inference="similar to AA sequence:KEGG:Mlg_1568" /note="KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase" /codon_start=1 /transl_table=11 /product="molybdenum cofactor cytidylyltransferase" /protein_id="YP_004126610.1" /db_xref="GI:319762673" /db_xref="GeneID:10104032" /translation="MRESQQRIGAVVMAAGAGRRMGHVPKGLLRRGGEPLLLRQIRLL AEAGVDEAVVVLGHHAERLEPVLRQAGSAPRGMALRWVANPAPDEGPGASLRCGLAAL PDGLTTLLVMLADQPLLELQDVQAMLAAWRARAAGVELAVPQHAGQPGHPIVFGPLVR GQVLRAQGGAGVREWRRAHGDQVLLVPLSHARCTTDVDTPDDVQRLGRDFGVWLE" misc_feature 2049902..2050393 /locus_tag="Alide_1979" /note="GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function; Region: GT_2_like_f; cd04182" /db_xref="CDD:133025" misc_feature order(2050124..2050126,2050367..2050369,2050373..2050375) /locus_tag="Alide_1979" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:133025" gene complement(2050437..2051312) /locus_tag="Alide_1980" /db_xref="GeneID:10104033" CDS complement(2050437..2051312) /locus_tag="Alide_1980" /inference="similar to AA sequence:KEGG:Dtpsy_2274" /note="KEGG: dia:Dtpsy_2274 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126611.1" /db_xref="GI:319762674" /db_xref="GeneID:10104033" /translation="MNPEDIVVLPELKAYIDPLTPDEHDALERSILEEGCRDALVLWG NVLVDGHNRYGICRKHGLPFKTVQNTRFQNMEDVHLWMIDQHLGRRSVSEFQRGVLAL RKREIIAERRAAAAAAVVAAKAEAGQSPEAQAPWEGDTDPVVAKALASVPKVPEDALD TREALARAARLTAAQVKMIEAIHQNAAPEVVAAVKSGELSLNAAAVVATLPVDEQKSV AAGGAQELKQAARRVRDAKKKPKAEAPAATAQEGGGPAASPDELRQRVAELEAENERL RQQVKALQDLLAEQG" gene complement(2051415..2053439) /locus_tag="Alide_1981" /db_xref="GeneID:10104034" CDS complement(2051415..2053439) /locus_tag="Alide_1981" /inference="similar to AA sequence:KEGG:GOX2135" /note="KEGG: gox:GOX2135 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126612.1" /db_xref="GI:319762675" /db_xref="GeneID:10104034" /translation="MERISNNYQDASGKPYIRTFAIVLAIFGVLIFLARAKASLNMFE FGDETEKLVAAQMIKAGMRLYHDIFAHHGPVAYIISHAYVNLVDPTNFSHIRWFMVGL ALLASLSIYTSPIFKNTTSRLIATGAFLVLLSSIWAVQGIHMMLYHQIGGFLFIIPIT QVFLPLLYGHKPTAFGFASAGFSCAIICFTAYAFGPSVILISTSSIILIITNRHYTEI FKQIIPVFWGALFATSIVAIWIALNADFEGYFIYHFYFNQAVYSKFIEFNLGAIKNLF FIDFSRPAIVHTFILFGLIASLFFLAKTEKPQIFKKNNKLTAFSVVLFFLSLIMLNPR GSTGFHDAGLDVAGLAVFSVLGSYYIDEINGKLSTKKIALIILGILCTILLFELASRK AISSPYGVRKSDFKSYSNTRNATADYGLITELVENDKDLLALIFRPSIYIDTGKSPTS GHYYYLPWQAAYNKNPVDGYKIDICKDLELHRPSVIWFDNWKVWERYSIQDYEPCVME IINSSYRAITKGSYFYIKSDRLMQDHAALNVDEGKISATRPLDESTPIALKIFSPKND DNGTLKRIGIKFETHTRDNPGDAQLELSASDGKVFRQNFPLSELKNNHYKYFDVPNDI GANFASGKILSGSGSGISTLEIQSTDGNSLTCINYIYSDNKIAVTPGCPQ" gene complement(2053454..2054785) /locus_tag="Alide_1982" /db_xref="GeneID:10104035" CDS complement(2053454..2054785) /locus_tag="Alide_1982" /inference="protein motif:PFAM:PF01593" /note="PFAM: amine oxidase; KEGG: xal:XALc_2703 probable protoporphyrinogen oxidase protein" /codon_start=1 /transl_table=11 /product="amine oxidase" /protein_id="YP_004126613.1" /db_xref="GI:319762676" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR002937" /db_xref="GeneID:10104035" /translation="MANNFQQTEITIIGGGFTGLTAAYELVKSGIKVTVLESEPEIGG LAAAFDVGGEKLDRFYHHWFTNDLEVMTLIGELGLQNKVEINPTNTGVYYANNFFKLS TPWDLLNFTPLAFLDRIRLGLLALRARRVKNWKNLEAKTAHEWLKSLGGENVYRVVWQ PLLKGKFGPYAEDVSAVWFWNKLKLRGGSRGKGGEERLAYFKGGFVALAEALAQRIRD LGGIIAVNTPVSSVTKEGGDWIVKTTDGTISSKRIIFTTALPIISEMIKSWAPSEYLD SLNRIQYIGNVCLVLELDRPLSETYWLNVNDPSFPFVGVIEHTNFERPETYGGRHIVY LSKYLPHTDRLYSMTADEFLDYAIPFIQKMFPRFDRTWIQKHHLWRARWSQPVVEKYY STLIPDEDGPAEGLHICTMAQIYPEDRGTNYAIREGRRIGRKISRSPSVVN" misc_feature complement(2053475..2054722) /locus_tag="Alide_1982" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(2053481..2054722) /locus_tag="Alide_1982" /note="Protoporphyrinogen oxidase [Coenzyme metabolism]; Region: HemY; COG1232" /db_xref="CDD:31425" gene complement(2054791..2055756) /locus_tag="Alide_1983" /db_xref="GeneID:10104036" CDS complement(2054791..2055756) /locus_tag="Alide_1983" /inference="similar to AA sequence:KEGG:H16_A2892" /note="manually curated; KEGG: reh:H16_A2892 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126614.1" /db_xref="GI:319762677" /db_xref="InterPro:IPR005242" /db_xref="InterPro:IPR017441" /db_xref="GeneID:10104036" /translation="MNRIFRIIIGPGLAIFFIWLALKDINTRELIESIHQTEISYIVI AIFVFFAGYSCRIERWRLMLINENTKLNWKECAGPLMASVAANNVLPFRAGDIFRAIK FNKQLRISAATSITTLFVERLLDLLMVVLFLGIALAYFGMDSSRLIGIGGSALLSGGA IILFLLIFPSIFKPFAHWLSKVISKAFPKFGQKLDAEFTKIFTALEHTSKGSTMIKLI CWSFAAWLSEGLVFWFIALSIPTISYDLAAWLALPVGTLATIIPSTPGYVGTFDYFTS QAMIALGNREESSIAFAFIVHAVLWLPPTVVGGLYFLINPMKKTK" misc_feature complement(2054794..2055747) /locus_tag="Alide_1983" /note="Predicted integral membrane protein [Function unknown]; Region: COG0392" /db_xref="CDD:30741" misc_feature complement(2054830..2055717) /locus_tag="Alide_1983" /note="Uncharacterised protein family (UPF0104); Region: UPF0104; cl04219" /db_xref="CDD:194802" gene complement(2055753..2056766) /locus_tag="Alide_1984" /db_xref="GeneID:10104037" CDS complement(2055753..2056766) /locus_tag="Alide_1984" /inference="protein motif:PFAM:PF00535" /note="KEGG: cph:Cpha266_0350 glycosyl transferase family protein; manually curated; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_004126615.1" /db_xref="GI:319762678" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10104037" /translation="MTAIPKSEKKQELISIIVPCYNEEEVISETLKRLKIFCSELTEL DVELIFVDDGSRDRTRELLRNYASEDTRIKVICFARNFGHQIAVTAGIDAAVGNAVVL IDADLQDPPEVVHEMIAKWKEGYDVVYGTRTERPGESAFKLATARGFYRLLNKLSDVP IPLDTGDFRLMSRAVVDTLRAMPERDRFVRGMVSWVGFKQVALPYKRAERFAGESKYP LRKMLRFATDGILSFSTKPLQLSVALGMASAALSLIGIAYALFLRIFTNTWVEGWTAL MIAVLFIGGVQLVSIGILGEYVGRIYSEIKKRPLYVVQEYLGFSNEGPKMSRSPVVNI TNT" misc_feature complement(2055813..2056727) /locus_tag="Alide_1984" /note="undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714" /db_xref="CDD:182669" misc_feature complement(2056173..2056721) /locus_tag="Alide_1984" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature complement(order(2056449..2056451,2056704..2056706, 2056710..2056712)) /locus_tag="Alide_1984" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133030" misc_feature complement(order(2056449..2056454,2056608..2056610)) /locus_tag="Alide_1984" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature complement(2056449..2056457) /locus_tag="Alide_1984" /note="DXD motif; other site" /db_xref="CDD:133030" gene complement(2056865..2058238) /locus_tag="Alide_1985" /db_xref="GeneID:10104038" CDS complement(2056865..2058238) /locus_tag="Alide_1985" /inference="protein motif:PFAM:PF01136" /note="PFAM: peptidase U32; KEGG: dia:Dtpsy_2273 peptidase U32" /codon_start=1 /transl_table=11 /product="peptidase u32" /protein_id="YP_004126616.1" /db_xref="GI:319762679" /db_xref="GO:0008233" /db_xref="InterPro:IPR001539" /db_xref="GeneID:10104038" /translation="MTPKAPELLLPAGSLDKMRAAYDFGADAVYAGQPRYSLRARNNE FRLEQIAQGIQEAHARGKKFFVTSNLIAHNDKVRTYLRDIEPVIDCKPDALIMADPGL IMMVKEKWPETEVHLSVQANTTNWATVKFWQKAGVSRIILSRELSLDEIEKIRQECPD MEIEVFVHGALCIAYSGRCLLSGYFNHRDPNQGTCTNACRWEYKTHDAAVDPNTGEAL ATGMDKGFNFEQAREAADAQFSSTCGSGQRHPKADQVYLIEEIGRPGELMPIMEDEHG TYIMNSKDLRAVEHVERLVKIGVDSLKIEGRTKSLYYVARTAQVYRRAIDDAVAGRPF NPHLITELEGLANRGYTGGLLERRPANDYQNYETGNSVLQRAHFVGEVRGWADGLAEV ETKNRFQVGDMLEIIHPQGNRQVRLEKMFNLDGEPVQVAQGSPVRVCIPLDGPVEGAL IARLLQI" misc_feature complement(2056871..2058232) /locus_tag="Alide_1985" /note="putative protease; Provisional; Region: PRK15452" /db_xref="CDD:185349" misc_feature complement(2057162..2058016) /locus_tag="Alide_1985" /note="Peptidase family U32; Region: Peptidase_U32; cl03113" /db_xref="CDD:194534" gene complement(2058287..2059657) /locus_tag="Alide_1986" /db_xref="GeneID:10104039" CDS complement(2058287..2059657) /locus_tag="Alide_1986" /inference="similar to AA sequence:KEGG:Daci_1894" /note="KEGG: dac:Daci_1894 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126617.1" /db_xref="GI:319762680" /db_xref="GeneID:10104039" /translation="MRHASRLGGLSLAALLGVTGCGTGPAALRGPAASAEVAPRATAC PAALPTGTTCLSGRDSQGAYYLIARPADWNGVLVLHAHGGPLLSAPSPQRAVEDLERW AIMVRAGYAWAGSTFRQGGVAVRAAAEDTERLRGIFRSHVGQPRRTLLHGQSWGAGVA AKAAEMFTAQTVGEQPYDGVLLTSGVLGGGTHAYDFRLDLRVVYQYLCGNHPRPTEPQ YALNLGLPAGAHMTAADVAGRVNECLALDRPAAGRSTQQRAKARTISQVIRIPESSIT SHLAWGTLHFQDISSRRTGGRSPFGNEGAVYTGSADDAALNAGVLRYRADPAAYRQFA DDTDPTGRIPVPVLSTKWISDPTAFVELDARFRSVMRQGGSGRRLVQTFTTRGTHSYI SDATYATLASALLRWVETGAKPTPAGIAAACPAFEARLGAGCSFDPAYQPAPLQTRVP PRQRPE" sig_peptide complement(2059553..2059657) /locus_tag="Alide_1986" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.802) with cleavage site probability 0.481 at residue 35" gene complement(2059685..2060566) /locus_tag="Alide_1987" /db_xref="GeneID:10104040" CDS complement(2059685..2060566) /locus_tag="Alide_1987" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126618.1" /db_xref="GI:319762681" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10104040" /translation="MPFDLTDLRLFVHVHEAGSITGGAARSHLALPSASERIRGMESA LGAALLVRGQRGVRLTAAGHTLLHHARLVLRQMEHLRGDLADHGAGLAGHVHLLCNTS ALGEHLPPLLPAFLAAHPRVSVELEERTSQDIADTVRAGLADLGVVSDATDLQGLSTL PFRPDPLALAVPVGHALAAQRCVALAQLQDQDFVGLPHGSALQALVSRHLGPRARYRA RLQHLEAVCRLVGLGAGVAVVPLAAARRHARALRIRPVPLSDAWARRSLVLCLRDAHA LPPFTQQLVHHLRAEAH" misc_feature complement(2060375..2060554) /locus_tag="Alide_1987" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2059703..2060272) /locus_tag="Alide_1987" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(2059871..2059876,2059880..2059885, 2059901..2059918,2060183..2060203,2060207..2060209, 2060219..2060221,2060228..2060233,2060237..2060242)) /locus_tag="Alide_1987" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 2060710..2061423 /locus_tag="Alide_1988" /db_xref="GeneID:10104041" CDS 2060710..2061423 /locus_tag="Alide_1988" /inference="protein motif:PFAM:PF01925" /note="PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_2443 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126619.1" /db_xref="GI:319762682" /db_xref="InterPro:IPR002781" /db_xref="GeneID:10104041" /translation="MAAVVFLLAGVVKGVVGLGLPTVAMALLALRLVPAEAAALLVVP SLATNVWQTRPWGTLGPLGKRLAGLLLGVCAGTWAGAWLLGAPAGAWARVALGMALIG YALWSLAGASPHVPRRMERWLGPLAGAFTGFVTAATGVFVVPAVPYLQSLGLQRDAFV QAMGLSFSVSTLALAVGLAGNASLPGAMLGWSVLMLAPALLGMALGGWLRRRLSPLWF RRCLMAGLLALGGHMVLAG" gene complement(2061443..2061976) /locus_tag="Alide_1989" /db_xref="GeneID:10104042" CDS complement(2061443..2061976) /locus_tag="Alide_1989" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_2271 two component transcriptional regulator, fis family; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004126620.1" /db_xref="GI:319762683" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR020441" /db_xref="GeneID:10104042" /translation="MDAERLLLLVEDDEAFARTLARSFERRGYRVLRADSLAQVRELL GAHSPSYAVVDLKLKGEATGLACVRELHAHDEGMLIVVLTGYASIATAVEAVKLGACH YLAKPSNTDDIEAAFGLTEGNADVELTNRCSSIKTLEWERIHEVLAETGFNITEAARR LGMHRRTLARKLDKRRV" misc_feature complement(2061446..2061976) /locus_tag="Alide_1989" /note="Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]; Region: COG4567" /db_xref="CDD:34205" misc_feature complement(2061629..2061955) /locus_tag="Alide_1989" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2061656..2061661,2061668..2061670, 2061725..2061727,2061785..2061787,2061812..2061814, 2061941..2061946)) /locus_tag="Alide_1989" /note="active site" /db_xref="CDD:29071" misc_feature complement(2061812..2061814) /locus_tag="Alide_1989" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2061785..2061790,2061794..2061796, 2061800..2061805)) /locus_tag="Alide_1989" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2061653..2061661) /locus_tag="Alide_1989" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2061455..2061577) /locus_tag="Alide_1989" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(2061977..2063293) /locus_tag="Alide_1990" /db_xref="GeneID:10104043" CDS complement(2061977..2063293) /locus_tag="Alide_1990" /inference="protein motif:PFAM:PF02518" /note="KEGG: ajs:Ajs_2780 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004126621.1" /db_xref="GI:319762684" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:10104043" /translation="MTPGTPATLKARSADAAAGLKNLQQLIQLRWIAVVGQIFTIEVA HYGLQLPLPLREMLMVVGCLALYNVTSLLRWRTGRGVRNVELFLALLVDVAVLTVQLY LSGGTGNPFALLFLLQIALGAALLRSGYIWAMVCITALCLALLAHYRVPLQLSPDFSR GLASPYVLGLLVCFMLNAALVVIFISRINHNLRERDARLAAARQRAAEQQHVLRMGLL ASGAAHELGTPLSTMAVILGDWRRDPALADNAALQQDVAEMQVQLQRCKTIVSGILLS AGEARAEASAQTTVRQFLDALAREWRATRAVDRFDYDNRFGQDGPMVSDVTLQQMVFN VLDNARDASPHWVGLVAEREQDMLRIAISDDGPGFAPTMLARLGAPYQSSKGQPGGGL GLFLSLNVARTLGGSVHAENLPGGGARVTITLPLAAIALDTGHGTF" misc_feature complement(2062463..2062654) /locus_tag="Alide_1990" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2062475..2062477,2062487..2062489, 2062496..2062498,2062508..2062510,2062517..2062519, 2062529..2062531,2062586..2062588,2062595..2062597, 2062607..2062609,2062616..2062618,2062628..2062630, 2062640..2062642)) /locus_tag="Alide_1990" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2062622..2062624) /locus_tag="Alide_1990" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2062022..2062312) /locus_tag="Alide_1990" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2062034..2062036,2062040..2062045, 2062058..2062060,2062064..2062066,2062112..2062123, 2062187..2062192,2062196..2062198,2062202..2062204, 2062208..2062210,2062271..2062273,2062280..2062282, 2062292..2062294)) /locus_tag="Alide_1990" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2062280..2062282) /locus_tag="Alide_1990" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2062115..2062117,2062121..2062123, 2062190..2062192,2062196..2062198)) /locus_tag="Alide_1990" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2063290..2064099) /locus_tag="Alide_1991" /db_xref="GeneID:10104044" CDS complement(2063290..2064099) /locus_tag="Alide_1991" /inference="protein motif:PFAM:PF02104" /note="PFAM: Surfeit locus 1 family protein; KEGG: ajs:Ajs_2779 surfeit locus 1 family protein" /codon_start=1 /transl_table=11 /product="surfeit locus 1 family protein" /protein_id="YP_004126622.1" /db_xref="GI:319762685" /db_xref="InterPro:IPR002994" /db_xref="GeneID:10104044" /translation="MTLRAPAADQPNAPRSGRTLALLALAGVALALAFAALGAWQVER RVWKLALMQRVEQRLHAEPVPLPPRADWPRVDAAGHEYLPVLAQGRWLAGKTVLTQAA TELGAGFWVLTALQLDAGGQVLVNRGFIPEAQRGAWAAGTAFPLAREGAAAQVRGLLR MTEPGGGFLRSNDPARQRWHSRDVAAIARALGLEDAAPFFIDAGIPDPRAGNASPGAG PWPRPGMTVVRFHNSHLVYAITWFGLAAMAAAATVFVTRHELRLRAAASAR" sig_peptide complement(2063983..2064099) /locus_tag="Alide_1991" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.939 at residue 39" misc_feature complement(2063368..2063982) /locus_tag="Alide_1991" /note="SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring...; Region: SURF1; cd06662" /db_xref="CDD:119401" gene complement(2064096..2064470) /locus_tag="Alide_1992" /db_xref="GeneID:10104045" CDS complement(2064096..2064470) /locus_tag="Alide_1992" /inference="protein motif:TFAM:TIGR02847" /note="KEGG: ajs:Ajs_2778 cytochrome c oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit iv" /protein_id="YP_004126623.1" /db_xref="GI:319762686" /db_xref="InterPro:IPR005171" /db_xref="InterPro:IPR014210" /db_xref="GeneID:10104045" /translation="MSAHELHAGHGGHHQDDHHHDDIHVTRGDYVKGFVLAVILTAIP FWLVMNGAIQDRTTGALVLGLFAAVQIVVHMVYFLHMNGKIQGGWTMLSTLFTIVFLA VTIAGTLWVMFHMNAAMMPSHP" misc_feature complement(2064111..2064389) /locus_tag="Alide_1992" /note="Prokaryotic Cytochrome C oxidase subunit IV; Region: COX4_pro; cl01204" /db_xref="CDD:194066" gene complement(2064471..2065103) /locus_tag="Alide_1993" /db_xref="GeneID:10104046" CDS complement(2064471..2065103) /locus_tag="Alide_1993" /inference="protein motif:TFAM:TIGR02842" /note="KEGG: dia:Dtpsy_2267 cytochrome o ubiquinol oxidase, subunit III; TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase, subunit iii" /protein_id="YP_004126624.1" /db_xref="GI:319762687" /db_xref="GO:0050661" /db_xref="InterPro:IPR000298" /db_xref="InterPro:IPR014206" /db_xref="GeneID:10104046" /translation="MSDTHTLPASAAALAERQYHLAHEPHPENGTSLGFWLYLMSDCL IFAVLFATYGVLGRNYAGGPTGAELFDLKLVAINTAFLLLSSITFGFAMLQKQQRDVR GTLAWLAVTGLLGLAFLAVELYEFAHLLHEGAGPQRSAFLSSFFTLVGTHGLHVTFGT IWLVTLMIQIGKHGLIPENARRLNCLSMFWHFLDVVWIGVFTFVYLMGVL" misc_feature complement(2064480..2065037) /locus_tag="Alide_1993" /note="Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously...; Region: Ubiquinol_oxidase_III; cd02863" /db_xref="CDD:29487" misc_feature complement(order(2064948..2064950,2064957..2064962, 2064969..2064974,2064993..2064995,2065002..2065004, 2065014..2065019)) /locus_tag="Alide_1993" /note="Subunit I/III interface [polypeptide binding]; other site" /db_xref="CDD:29487" misc_feature complement(order(2064531..2064533,2064552..2064554, 2064837..2064842,2064852..2064854,2064861..2064863, 2064972..2064974,2064996..2064998)) /locus_tag="Alide_1993" /note="Subunit III/IV interface [polypeptide binding]; other site" /db_xref="CDD:29487" gene complement(2065096..2067102) /locus_tag="Alide_1994" /db_xref="GeneID:10104047" CDS complement(2065096..2067102) /locus_tag="Alide_1994" /EC_number="1.9.3.1" /inference="protein motif:TFAM:TIGR02843" /note="TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; KEGG: ajs:Ajs_2776 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase, subunit i" /protein_id="YP_004126625.1" /db_xref="GI:319762688" /db_xref="GO:0050661" /db_xref="InterPro:IPR000883" /db_xref="InterPro:IPR014207" /db_xref="GeneID:10104047" /translation="MPEHTIPPAHWLLGRITWDSIPMAHEPIVLWTFIAVVLGGLVVV AALFKFRLWGPLWRDWFCSIDHKKIGIMYMVLGLVMFLRGFADAAMMRLQQSMAFGEN MGYLPPHHYDQIFTAHGVIMIFFVAMPFVTGLMNYLVPLQIGARDVSFPFLNNFSFWM TTGGAVLVMLSLFLGEFSTAGWLALSNLGAQDPGVGLDYYIWGLQVAGVGTTLSGINL IVTIIKMRAPGMQLMKMPVFSWTALCTNALIVATFPILTAALVLMSLDRYAGTNFFTN DLGGNSMLYVNLIWIWGHPEVYILVLPAFGVFSEVVATFSRKRLFGYTSMVYATVCIT VLSYLVWLHHFFTMGSGATVNTFFGITTMIISIPTGAKIFNWLFTMYKGRIRFELPML WTVGFMVTFAIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFAVFAGINYWF PKAFGYKLDEFWGRCSFWFWLVGFWVAFTPLYILGLMGATRRVNHFEDPSLQIWFVIA ACGAALIALGIASFLIQLAVSYARREQLRDVTGDPWDARTLEWATSSPPPQYNFAFTP VAHEIDAWWDMKKHGYQRPLAGFQPIHMPANTGAGVVIAGLSTLFGFAMIWHMWPLAI ASFAATVLASIIHTFNYQRDYHIPAAEVAATEEARTQQLAAAHV" misc_feature complement(2065252..2066955) /locus_tag="Alide_1994" /note="Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]; Region: CyoB; COG0843" /db_xref="CDD:31185" misc_feature complement(2065417..2066925) /locus_tag="Alide_1994" /note="Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons...; Region: Ubiquinol_Oxidase_I; cd01662" /db_xref="CDD:29933" misc_feature complement(order(2066440..2066442,2066452..2066454, 2066470..2066475,2066632..2066634,2066641..2066643, 2066662..2066664,2066692..2066694,2066884..2066886)) /locus_tag="Alide_1994" /note="D-pathway; other site" /db_xref="CDD:29933" misc_feature complement(order(2066758..2066766,2066773..2066775, 2066830..2066835,2066842..2066844,2066854..2066856)) /locus_tag="Alide_1994" /note="Putative ubiquinol binding site [chemical binding]; other site" /db_xref="CDD:29933" misc_feature complement(order(2065558..2065560,2065672..2065674, 2065798..2065800,2065810..2065812,2066749..2066751)) /locus_tag="Alide_1994" /note="Low-spin heme (heme b) binding site [chemical binding]; other site" /db_xref="CDD:29933" misc_feature complement(order(2065630..2065632,2065837..2065842, 2065852..2065854,2066242..2066247,2066260..2066262)) /locus_tag="Alide_1994" /note="Putative water exit pathway; other site" /db_xref="CDD:29933" misc_feature complement(order(2065816..2065818,2066071..2066076, 2066221..2066223)) /locus_tag="Alide_1994" /note="Binuclear center (heme o3/CuB) [ion binding]; other site" /db_xref="CDD:29933" misc_feature complement(order(2065987..2065989,2065996..2065998, 2066071..2066076,2066176..2066178,2066209..2066211, 2066221..2066223)) /locus_tag="Alide_1994" /note="K-pathway; other site" /db_xref="CDD:29933" misc_feature complement(order(2065627..2065632,2065837..2065842, 2066071..2066073)) /locus_tag="Alide_1994" /note="Putative proton exit pathway; other site" /db_xref="CDD:29933" gene complement(2067127..2068116) /locus_tag="Alide_1995" /db_xref="GeneID:10104048" CDS complement(2067127..2068116) /locus_tag="Alide_1995" /inference="protein motif:TFAM:TIGR01433" /note="KEGG: ajs:Ajs_2775 ubiquinol oxidase, subunit II; TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome c oxidase subunit II" /codon_start=1 /transl_table=11 /product="ubiquinol oxidase, subunit ii" /protein_id="YP_004126626.1" /db_xref="GI:319762689" /db_xref="GO:0050661" /db_xref="InterPro:IPR002429" /db_xref="InterPro:IPR006333" /db_xref="InterPro:IPR010514" /db_xref="InterPro:IPR011759" /db_xref="InterPro:IPR012141" /db_xref="GeneID:10104048" /translation="MIHMKKLRGPAWLAAAAAVAGLAGCGKTVVLNPAGDIAAQQGDL VVTATLLMLIVIVPVILLTLLFAWKYRQGNADAKYDPDWHHSTVLELVIWTVPLMIII ALGALTWIATHKLDPYRPLDRIDAQRALAADARPLEVEVVAMDWKWLFFYPEQGIATV NELAAPVDRPIRFKLTATSTMNAFYVPDLAGMIYAMPGMQTELNAVINKPGVFQGLAS HYSGKGFSGMTFKFHGLSDAEFAQWIDKAKAEGKPLDKAAYLQLARPSERDPVQRFSS VEPDLYHRVLNRCVEDGQPCMHETMAKDARRGAAAAPAEPPAHAQHGAGGHHQ" sig_peptide complement(2068036..2068116) /locus_tag="Alide_1995" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.742) with cleavage site probability 0.236 at residue 27" misc_feature complement(2067253..2068032) /locus_tag="Alide_1995" /note="cytochrome o ubiquinol oxidase subunit II; Provisional; Region: PRK10525" /db_xref="CDD:182518" misc_feature complement(2067433..>2067636) /locus_tag="Alide_1995" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" misc_feature complement(2067238..2067375) /locus_tag="Alide_1995" /note="COX Aromatic Rich Motif; Region: COX_ARM; pfam06481" /db_xref="CDD:148220" gene 2068418..2069749 /locus_tag="Alide_1996" /db_xref="GeneID:10104049" CDS 2068418..2069749 /locus_tag="Alide_1996" /inference="similar to AA sequence:KEGG:Ajs_2774" /note="KEGG: ajs:Ajs_2774 general substrate transporter" /codon_start=1 /transl_table=11 /product="general substrate transporter" /protein_id="YP_004126627.1" /db_xref="GI:319762690" /db_xref="InterPro:IPR005829" /db_xref="GeneID:10104049" /translation="MSSASIAYPVYGHEDAASLSRAHTDEDVTPGEIAVGVVIGRASE YFDFFVFGIACVLVFPSLLFPFLSHLDGTLAAFAIFAIAFVARPFGTAISMAVQRRWG RGTKLTLALFVLGVCTVGMAFLPGYQSAGTAAIVALAVLRFGQGLALGGSWDGLPSLL AMAAPPERRGWYAMVGQLGAPLGFVLAASLFAYLYGSLSLAEFLAWGWRYPFCVAFAI NVVALFARLRLVVGQSYAELLEEKELEPVGVARLMQDEGGNVVLGAFAALASFALFHV VTVFPLSWMSLYSGRSMTGVLGVQIVGALLAVAAVALSGRLADRVGRRNLLGSMAVLI GLFSLATPWLLGGGELGGNVFLLAGFVLLGLSYGQASGTVTANFSARYRYTGAALSTD LAWLIGAAFAPLVALGLSARFGLGAVTLYLLSGVACTLAALRINRVIEQRS" misc_feature 2068535..2069707 /locus_tag="Alide_1996" /note="metabolite-proton symporter; Region: 2A0106; TIGR00883" /db_xref="CDD:188094" misc_feature 2068682..>2069071 /locus_tag="Alide_1996" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(2069858..2070820) /locus_tag="Alide_1997" /db_xref="GeneID:10104050" CDS complement(2069858..2070820) /locus_tag="Alide_1997" /inference="protein motif:TFAM:TIGR02794" /note="KEGG: dia:Dtpsy_2263 protein TolA; TIGRFAM: protein TolA; TonB family protein; PFAM: Tol-Pal system TolA" /codon_start=1 /transl_table=11 /product="protein tola" /protein_id="YP_004126628.1" /db_xref="GI:319762691" /db_xref="GO:0008565" /db_xref="InterPro:IPR006260" /db_xref="InterPro:IPR014161" /db_xref="GeneID:10104050" /translation="MHATNDRDQFAPPRPPGRMRAIALAVLAHAILIGALTWGVNWKS SADQPAVEAELWAAVPQQAAPRAAEPPPPPEPEPEPQPTPAPPPPPPPPPPPRQAEPD THEADIALQKQKKREEELKKKREQQLEQEKKDKERRERLEQEKKERQLAQQKAEHEKA ERAKKLAEQKRLEQQKAEQEKQKKLAEEKRKAELEAKRAEEFRKDQMRRIAGLAGATG GETATGTAQRSAGPSGSYAGKVAAKVKPNIVYPDLVEGNPRAEVEVRAAPDGTIVGTR ILHSSGNKAWDDAVIRALQRTETLPRDVDGRVPSSLVIGFRPKD" misc_feature complement(2069870..2070085) /locus_tag="Alide_1997" /note="Gram-negative bacterial tonB protein; Region: TonB; cl10048" /db_xref="CDD:195954" gene complement(2070842..2071267) /locus_tag="Alide_1998" /db_xref="GeneID:10104051" CDS complement(2070842..2071267) /locus_tag="Alide_1998" /inference="protein motif:PFAM:PF02472" /note="PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR" /codon_start=1 /transl_table=11 /product="biopolymer transport protein exbd/tolr" /protein_id="YP_004126629.1" /db_xref="GI:319762692" /db_xref="GO:0005215" /db_xref="InterPro:IPR003400" /db_xref="GeneID:10104051" /translation="MPAMASRSGTRRRSMNEINMVPFIDVMLVLLIIFMVTAPMLTPS SVNLPSVGKGTKMPKTRADVIVDKDGGIRFKTDGNERTVPLQNLGSTARNWLKDQPED TPVLISADKNVSYDSVMKAMSALQAAGIPRVALAVKSGG" misc_feature complement(2070854..2071225) /locus_tag="Alide_1998" /note="Biopolymer transport protein ExbD/TolR; Region: ExbD; cl00537" /db_xref="CDD:193858" gene complement(2071281..2071982) /locus_tag="Alide_1999" /db_xref="GeneID:10104052" CDS complement(2071281..2071982) /locus_tag="Alide_1999" /inference="protein motif:TFAM:TIGR02796" /note="KEGG: dia:Dtpsy_2261 protein TolQ; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel" /codon_start=1 /transl_table=11 /product="protein tolq" /protein_id="YP_004126630.1" /db_xref="GI:319762693" /db_xref="InterPro:IPR002898" /db_xref="InterPro:IPR014163" /db_xref="GeneID:10104052" /translation="MNSQDMSILSLVLNASWVVQLVMLLLLAVSVASWAAIFRKLFAL KRVKALNEDFERDFWSGTSLNELFAAAAHNAKSAGPMERIFASGMREYQKLRERRITD PGTLLDGARRAMRASFQREMDVIESSLSFLGSVASVSPYVGLFGTVWGIMHAFTGFAG MEQVTLATVAPGIAEALVATAIGLFAAIPAVIAYNRFARDIDRVAIHQETFIEEFSNI LQRNLGAHPASPSGH" sig_peptide complement(2071875..2071982) /locus_tag="Alide_1999" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.932) with cleavage site probability 0.928 at residue 36" misc_feature complement(2071320..2071964) /locus_tag="Alide_1999" /note="MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568" /db_xref="CDD:186086" gene complement(2071979..2072401) /locus_tag="Alide_2000" /db_xref="GeneID:10104053" CDS complement(2071979..2072401) /locus_tag="Alide_2000" /inference="protein motif:TFAM:TIGR02799" /note="KEGG: dia:Dtpsy_2260 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein" /codon_start=1 /transl_table=11 /product="tol-pal system-associated acyl-CoA thioesterase" /protein_id="YP_004126631.1" /db_xref="GI:319762694" /db_xref="GO:0005515" /db_xref="GO:0016790" /db_xref="InterPro:IPR006683" /db_xref="InterPro:IPR006684" /db_xref="InterPro:IPR014166" /db_xref="GeneID:10104053" /translation="MFEWPVRIYWEDTDAGGIVFYANYLKFFERARTEWLRSLDLGQQ RLRELTGGMFVVTDARLRYLRPARLDDELIVTARLQECGRASLTIEQQALLKPEQMNP ELPPALLCEGSIRIGWVEAATLRPARIPGPLLERLSSS" misc_feature complement(2072045..2072398) /locus_tag="Alide_2000" /note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active...; Region: 4HBT; cd00586" /db_xref="CDD:48031" misc_feature complement(order(2072144..2072155,2072234..2072236, 2072240..2072242,2072315..2072317)) /locus_tag="Alide_2000" /note="active site" /db_xref="CDD:48031" gene complement(2072404..2073588) /locus_tag="Alide_2001" /db_xref="GeneID:10104054" CDS complement(2072404..2073588) /locus_tag="Alide_2001" /inference="protein motif:PFAM:PF00155" /note="PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_2259 aminotransferase" /codon_start=1 /transl_table=11 /product="aminotransferase class i and ii" /protein_id="YP_004126632.1" /db_xref="GI:319762695" /db_xref="GO:0008565" /db_xref="GO:0030170" /db_xref="InterPro:IPR001176" /db_xref="InterPro:IPR004838" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10104054" /translation="MKFSTRAERIEPFYVMEVAKAAQGLAREVAGTREPMIFLNIGEP DFTAPPLVRQAADRAVRDGLTQYTNALGLDELRERISGWYAARFGVNVPARRIVVTAG ASAALQLACLALIDAGDEILMPDPSYPCNRHFVSAADGRAVLVPTTAEERFQLSAAKV EAAWGARTRGVLLASPSNPTGTSIAPDELRRIHEAVRARGGITIIDEIYLGLSYEEAF GHTALALGEDVVSINSFSKYFNMTGWRLGWMVVPEAMVSVVERLAQNLFICASTISQH AALACFEAESIAEYERRRAEFKARRDFFIPALNRLGLTVPVPPDGAFYAWADCGEAAR RLGVQGSWDFAFELMRRAHLAITPGRDFGTADTARFVRFSTANSMAQLQEAVARMQAL IG" misc_feature complement(2072419..2073507) /locus_tag="Alide_2001" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature complement(2072416..2073480) /locus_tag="Alide_2001" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(2072854..2072856,2072878..2072883, 2072887..2072889,2072962..2072964,2073055..2073057, 2073205..2073207,2073277..2073285)) /locus_tag="Alide_2001" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(2072758..2072760,2072767..2072769, 2072854..2072862,2072983..2072985,2073175..2073177, 2073274..2073276)) /locus_tag="Alide_2001" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(2072878..2072880) /locus_tag="Alide_2001" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(2073660..2074205) /locus_tag="Alide_2002" /db_xref="GeneID:10104055" CDS complement(2073660..2074205) /locus_tag="Alide_2002" /inference="protein motif:TFAM:TIGR01951" /note="KEGG: dia:Dtpsy_2258 NusB antitermination factor; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44" /codon_start=1 /transl_table=11 /product="transcription antitermination factor nusb" /protein_id="YP_004126633.1" /db_xref="GI:319762696" /db_xref="GO:0003715" /db_xref="InterPro:IPR006027" /db_xref="InterPro:IPR011605" /db_xref="GeneID:10104055" /translation="MSEASTPGQPMPSKRPPRQPRTGLTATGARKAGSKSGRSRAREF ALQALYQHLVGGNDATAIDLFTRDLSGFHKADAAHYDALLHGCIETEQHMDALIAPLL DRKMAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAKEFGGTDGHKYVNGILN GLAPQLRTAEVAADKAAGKAG" misc_feature complement(2073708..2074094) /locus_tag="Alide_2002" /note="Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus...; Region: Terminator_NusB; cd00619" /db_xref="CDD:29565" misc_feature complement(order(2074080..2074082,2074092..2074094)) /locus_tag="Alide_2002" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:29565" gene complement(2074202..2074666) /locus_tag="Alide_2003" /db_xref="GeneID:10104056" CDS complement(2074202..2074666) /locus_tag="Alide_2003" /inference="protein motif:TFAM:TIGR00114" /note="KEGG: ajs:Ajs_2767 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase" /codon_start=1 /transl_table=11 /product="6,7-dimethyl-8-ribityllumazine synthase" /protein_id="YP_004126634.1" /db_xref="GI:319762697" /db_xref="InterPro:IPR002180" /db_xref="GeneID:10104056" /translation="MFGADKGTADRLDGRKLHIGIVQARFNENITNALAAACRAELLR LGVQEQHIRHVLVPGALEVPLALQAMAERGGYDALIALGCIIRGETYHFELVANESGA GVTRIGLDYQIPIANAILTTENLEQAIARQSEKGVDAARVAVEMANLQEELS" misc_feature complement(2074226..2074612) /locus_tag="Alide_2003" /note="lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209" /db_xref="CDD:187742" misc_feature complement(order(2074229..2074234,2074241..2074243, 2074253..2074255,2074262..2074264,2074274..2074276, 2074286..2074288,2074298..2074300,2074304..2074306, 2074310..2074312,2074316..2074318,2074328..2074333, 2074340..2074354,2074358..2074366,2074370..2074378, 2074382..2074387,2074391..2074393,2074397..2074402, 2074406..2074408,2074439..2074441,2074451..2074453, 2074457..2074465,2074469..2074477,2074481..2074486, 2074493..2074504,2074589..2074591,2074607..2074609)) /locus_tag="Alide_2003" /note="homopentamer interface [polypeptide binding]; other site" /db_xref="CDD:187742" misc_feature complement(order(2074253..2074255,2074262..2074264, 2074274..2074276,2074307..2074321,2074388..2074393, 2074397..2074399,2074403..2074420,2074481..2074492, 2074586..2074591)) /locus_tag="Alide_2003" /note="active site" /db_xref="CDD:187742" gene complement(2074670..2075791) /locus_tag="Alide_2004" /db_xref="GeneID:10104057" CDS complement(2074670..2075791) /locus_tag="Alide_2004" /inference="protein motif:TFAM:TIGR00506" /note="KEGG: dia:Dtpsy_2256 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II" /codon_start=1 /transl_table=11 /product="3,4-dihydroxy-2-butanone 4-phosphate synthase" /protein_id="YP_004126635.1" /db_xref="GI:319762698" /db_xref="GO:0008686" /db_xref="InterPro:IPR000422" /db_xref="InterPro:IPR000926" /db_xref="InterPro:IPR016299" /db_xref="GeneID:10104057" /translation="MNTPLTPAPISPVQDIVAELAAGRIVILVDEEDRENEGDLVIAA DHVTPEAINFMARFGRGLVCLTLTRERCERLQLPPMVARNGTKMGTAFTVSIEAAEGV TTGISAADRARTVQAAVAPHAQASDLVQPGHIFPLQAVDGGVLMRAGHTEAGCDLAAM AGCSPAAVICEVMKDDGTMARLPDLQLFAAEHGLKIGTIADLIEHRSRTESLVHKAGS RPMQTAFGEFTAHAFRDEPSQGVHLALVKGQWDAQESVPVRVHEPLSVLDTLESSRAM HSWSLDASLRYIAAQGRGVAVLLNCGETGEQLLAQFEGRARAAQAPERGRMDLRTYGV GAQILREVGVARMQLMGQPRRMPSMAGYGLEITGYIPKE" misc_feature complement(2074673..2075764) /locus_tag="Alide_2004" /note="bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional; Region: PRK14019" /db_xref="CDD:184457" misc_feature complement(2075174..2075755) /locus_tag="Alide_2004" /note="3,4-dihydroxy-2-butanone 4-phosphate synthase; Region: DHBP_synthase; cl00336" /db_xref="CDD:185917" misc_feature complement(2074679..2075158) /locus_tag="Alide_2004" /note="GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cl00522" /db_xref="CDD:193852" misc_feature complement(order(2074823..2074825,2074832..2074837, 2074841..2074843,2074859..2074861,2074898..2074900, 2074937..2074939,2074946..2074951,2074970..2074972, 2074976..2074990,2074994..2074999,2075003..2075005, 2075057..2075059,2075063..2075065,2075069..2075071, 2075090..2075098,2075102..2075104,2075126..2075146)) /locus_tag="Alide_2004" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:88311" misc_feature complement(order(2074727..2074729,2074736..2074741, 2074802..2074804,2074808..2074810,2074826..2074828, 2074835..2074837,2074847..2074858,2074952..2074954, 2074961..2074963,2074967..2074969,2074994..2074996, 2075000..2075017)) /locus_tag="Alide_2004" /note="active site" /db_xref="CDD:88311" gene complement(2075929..2076216) /locus_tag="Alide_2005" /db_xref="GeneID:10104058" CDS complement(2075929..2076216) /locus_tag="Alide_2005" /inference="protein motif:PFAM:PF00111" /note="PFAM: ferredoxin; KEGG: dia:Dtpsy_2255 ferredoxin" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_004126636.1" /db_xref="GI:319762699" /db_xref="GO:0009055" /db_xref="GO:0051536" /db_xref="InterPro:IPR001041" /db_xref="GeneID:10104058" /translation="MSTPPFFTARVGDDGTQCDAWPDQPLLVSLEQGGIDWPSSCRNG TCRTCICLLVQGQVRYEVEWPGLSAEEKAEGWVLPCVARPVSDVTLEAPAV" misc_feature complement(2075944..2076195) /locus_tag="Alide_2005" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature complement(order(2075977..2075982,2076070..2076081, 2076085..2076087,2076094..2076096,2076103..2076108)) /locus_tag="Alide_2005" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature complement(order(2075977..2075979,2076070..2076072, 2076079..2076081,2076094..2076096)) /locus_tag="Alide_2005" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" gene complement(2076574..2077455) /locus_tag="Alide_2006" /db_xref="GeneID:10104059" CDS complement(2076574..2077455) /locus_tag="Alide_2006" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: pna:Pnap_2699 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="nudix hydrolase" /protein_id="YP_004126637.1" /db_xref="GI:319762700" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="GeneID:10104059" /translation="MQPVPHPSTPEIPRDAASVVLLRDTPAGIETLLLRRHAQMANMG GLYVFPGGKLDAADRDDAALLDQPAQTLHEGLGESALDPATAAGLHVAALREALEECG LLLAEPAQAQAPVDAPRARAMLREGQPLAQVLAALQLRLSTRRMCAWSRWITPVTPAM ATRRFDTRFFVAQAPDGQEAGHDDEETTASVWIAPRTALEQYRDGQIDLAPPQIMGLA HLARHASVRSVMEQARLRRPPTVLPEAFEHEGARVICYPGDPLHSVRDRALPGPTRLY QREQRFFPGDGFESLFA" gene 2077586..2078494 /locus_tag="Alide_2007" /db_xref="GeneID:10104060" CDS 2077586..2078494 /locus_tag="Alide_2007" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004126638.1" /db_xref="GI:319762701" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:10104060" /translation="MELDFKGRVAIVTGAGGGLGRQHALALAARGASVLVNDLGGAVD GSGGSAGAAQAVVDEIRAAGGQALANGASVTDFAAVQAMVQQAIDAWGRVDVLVNNAG ILRDKSFAKMDMADFQLVVQVHLMGAAHCCKAVWPHMQAQKYGRIVMTTSSTGLYGNF GQANYGAAKLAQVGLMQTLAIEGAKYGIHVNALAPTAATRMTAGLMPDEVLARLAPEA VVPAMLALAHESAPTRTILCAGAGSFEAAHITLTRGIHLGQGPDVPEQLAARLAEVCD RAGEQVPQNGSDQGANELRLAMAVAA" misc_feature 2077592..2078311 /locus_tag="Alide_2007" /note="(3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs; Region: hydroxyacyl-CoA-like_DH_SDR_c-like; cd05353" /db_xref="CDD:187611" misc_feature order(2077592..2077594,2077673..2077675,2077907..2077915, 2077919..2077927,2077934..2077939,2077946..2077948, 2077958..2077963,2077970..2077972,2077979..2077984, 2077991..2077996,2078042..2078068,2078072..2078074, 2078081..2078086,2078093..2078098,2078102..2078110, 2078114..2078122,2078126..2078131,2078135..2078140, 2078144..2078146,2078213..2078215,2078222..2078227, 2078237..2078239,2078246..2078251,2078255..2078263, 2078279..2078281,2078291..2078299,2078303..2078311) /locus_tag="Alide_2007" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187611" misc_feature 2077613..2078278 /locus_tag="Alide_2007" /note="3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830" /db_xref="CDD:162551" misc_feature order(2077625..2077627,2077634..2077642,2077694..2077702, 2077706..2077708,2077802..2077807,2077883..2077894, 2077952..2077957,2078033..2078041,2078078..2078080, 2078090..2078092,2078168..2078176,2078180..2078191) /locus_tag="Alide_2007" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187611" misc_feature order(2077955..2077957,2078039..2078041,2078078..2078080, 2078090..2078092) /locus_tag="Alide_2007" /note="active site" /db_xref="CDD:187611" gene 2078602..2080131 /locus_tag="Alide_2008" /db_xref="GeneID:10104061" CDS 2078602..2080131 /locus_tag="Alide_2008" /EC_number="6.3.2.2" /inference="protein motif:TFAM:TIGR01434" /note="TIGRFAM: glutamate/cysteine ligase; KEGG: dia:Dtpsy_1339 glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase" /codon_start=1 /transl_table=11 /product="glutamate/cysteine ligase" /protein_id="YP_004126639.1" /db_xref="GI:319762702" /db_xref="GO:0004357" /db_xref="InterPro:IPR006334" /db_xref="InterPro:IPR007370" /db_xref="GeneID:10104061" /translation="MSTLQQRIAALPAERLAGMRRGIEKEGLRVLPAGGLALTPHPLA LGSALTHPCITTDYSESQIELITGAHVGVEDCLDELTQIHQYVLRTLRDAGGEMLWVS SMPCGLPTDETIPIGRYGNSHIGRAKSIYRMGLAHRYGRRMQTISGIHYNWSLPGVTS EEYFALIRNFRRHAFVLLYLFGASPALCPCFVQGRTHGLQPMGDGREALYLPHATSLR MGRLGYQSDAQASLNVSYNGLSGYADSLHEALTRPYPAYEAIGIRNIGGDYNQLGTSL LQIENEFYGTIRPKRTVRRGERPLHALRERGVEYVEVRLMDLDPFESVGITAATMRLL DVFLLHCLLTDSPPDTPQEIAECKHNQHQTAERGREPGLLLQRRGQSVALADWAAQVL DECAPIAAALDQAQPGQDYAAALRQARAVLADSALAPSARVLAAMQAQPGCSFEAFSF AQSAKARDRLLALPWSARQQAHYEALAARSLAEQKDIEAQDQLPFEEWRQQYMDPRQL G" misc_feature 2078602..2080107 /locus_tag="Alide_2008" /note="Glutamate-cysteine ligase; Region: Glu_cys_ligase; cl01099" /db_xref="CDD:186333" gene 2080177..2082360 /locus_tag="Alide_2009" /db_xref="GeneID:10104062" CDS 2080177..2082360 /locus_tag="Alide_2009" /inference="similar to AA sequence:KEGG:Vapar_3567" /note="KEGG: vap:Vapar_3567 protein of unknown function DUF893 YccS/YhfK" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126640.1" /db_xref="GI:319762703" /db_xref="GeneID:10104062" /translation="MPIPFASRLHAARRVLLSHYVANGAAAALGLLLISALVHLWLGS GAASAATVGAIVAIPPDMPAPRRGKLLHMLPAPLLALPLFLVVQRLHDEPWMLGLLIV PASFLAFLAMAWGKRGAPVAIAAVLALVFSMAVPAPAEGEGWRVALATTFHFGLGALL YQPWAALSNRLLNGRYRVQLIADVLLSLADLMRLQALQFTPVLSLGERDNPLMGALLL RQATLADQLQSARDIVLESPTSARQQRLAGMLLCALEMRDHLLASALDLEQLRRQPEQ AGALERLRDELLAQAGVLERLADALLLGRKPEPQARPRLDLGALEEPAHAGFTPARLV RGLAYRIGHVQDEVGQLVALARGEREPDLALVRVYWQMFVSSTGWGWKPFWGLWRWRA APLRHAMRAALAIGVGYAVSQLLPWREHAYWIVLTIIVVLRGSLAQTLERRNERVAGT LLGCLIASALLAADMPHWALLACVTLAQAVAHSFTLRRYLFTAVAATVLGLVQAHLLG AGGSTGFVLLERMADTLIGAGLAWAFAYVLPSWERQQIPALVARTLAAQMRHAREALA LGQLQAVDNHPELAWRLARREAYDSLGALVQATARAWKEPRAVRPPLAPLERMQAHCY QLLAQLTAVKSMLLLRRGHLRGEDVHAPLQAAAQRIEAILSGQDMPAPPEHGADDGLA AEPLPALVETDLTPWLLRRLRLAEGLARQMRAEAGQVVAPLSEAA" misc_feature 2080432..2081154 /locus_tag="Alide_2009" /note="FUSC-like inner membrane protein yccS; Region: FUSC-like; pfam12805" /db_xref="CDD:193281" misc_feature 2080645..2082075 /locus_tag="Alide_2009" /note="integral membrane protein, YccS/YhfK family; Region: YCCS_YHJK; TIGR01667" /db_xref="CDD:130728" gene complement(2082357..2082569) /locus_tag="Alide_2010" /db_xref="GeneID:10104063" CDS complement(2082357..2082569) /locus_tag="Alide_2010" /inference="similar to AA sequence:KEGG:Aave_2269" /note="KEGG: aav:Aave_2269 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126641.1" /db_xref="GI:319762704" /db_xref="GeneID:10104063" /translation="MPATPPHKQNAEMLFKGVVCALIGAVILLAPYIARSPSVQELMR QAALVGWFSLVLGVAFIVRALWQRWR" gene complement(2082667..2083032) /locus_tag="Alide_2011" /db_xref="GeneID:10104064" CDS complement(2082667..2083032) /locus_tag="Alide_2011" /inference="protein motif:PFAM:PF01042" /note="PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_4413 endoribonuclease L-PSP" /codon_start=1 /transl_table=11 /product="endoribonuclease l-psp" /protein_id="YP_004126642.1" /db_xref="GI:319762705" /db_xref="InterPro:IPR006175" /db_xref="GeneID:10104064" /translation="MEIKRIATDNRRSRAVVYNDMVFVGGQTADDRSQDIRGQTAQTL AKIEKFLAEAGTDKSRLLTAQIWIKDLERDFAGMNEVWDAWTAPNAAPTRATAQCEMG AQDILVEIVVTAAVDQPMA" misc_feature complement(2082688..2083002) /locus_tag="Alide_2011" /note="This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_2; cd06150" /db_xref="CDD:100007" misc_feature complement(order(2082694..2082696,2082700..2082702, 2082706..2082708,2082736..2082762,2082775..2082777, 2082787..2082789,2082796..2082798,2082832..2082834, 2082838..2082840,2082844..2082849,2082853..2082855, 2082955..2082960,2082964..2082966,2082970..2082972, 2082979..2082981,2082985..2082987,2082994..2082999)) /locus_tag="Alide_2011" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100007" misc_feature complement(order(2082706..2082708,2082751..2082753, 2082796..2082798,2082808..2082810,2082997..2082999)) /locus_tag="Alide_2011" /note="putative active site [active]" /db_xref="CDD:100007" gene complement(2083067..2084455) /locus_tag="Alide_2012" /db_xref="GeneID:10104065" CDS complement(2083067..2084455) /locus_tag="Alide_2012" /inference="protein motif:PFAM:PF04324" /note="PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_4414 BFD-like (2Fe-2S)-binding region" /codon_start=1 /transl_table=11 /product="bfd domain protein (2fe-2S)-binding domain protein" /protein_id="YP_004126643.1" /db_xref="GI:319762706" /db_xref="InterPro:IPR007419" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR017224" /db_xref="GeneID:10104065" /translation="MATGVEVFDLVVIGAGPAGLSAAIEARRFGLSAVVLDEQRRVGG QIYRAIEESSPRRREVLGADYAAGAKLAQDFASCGAVHVGGAAVWNVDRDKTVSYLLD GGSRKVRGRSLVLASGAMERPFPVPGWTLPGVMGAGAAQILYKSSGAVPTEPVVLAGG GPLLFLLAQQYLEAGVKIKALIHTTRADDYLRAAPHVLGALRGWKDLSKGTRMLKKIR SHGVQTFAGASSFAIEGSEKAESIAFTHNGQRKRVETSLVLLHQGVVPNTQLSWSLRA EHRWDERQLCWIPITDAHGQIEETGIYIAGDSRGIVGAKASACQGRLAALSIANRLQP IAPGAFKQREQAILDEIRAHVQIRPFLDALYRPQNEHRIPEHDEVMVCRCEEVKAGQI RKYVEVGCLGPNQTKAFGRCGMGPCQGRLCGLTVTEIIASERKVCPQDVGYYRIRPPI KPITLGELASSE" misc_feature complement(<2084327..2084434) /locus_tag="Alide_2012" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(<2083076..2084431) /locus_tag="Alide_2012" /note="sarcosine oxidase, alpha subunit family, heterotetrameric form; Region: soxA; TIGR01372" /db_xref="CDD:162324" misc_feature complement(2083154..2083315) /locus_tag="Alide_2012" /note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; cl01093" /db_xref="CDD:194032" gene complement(2084457..2084801) /locus_tag="Alide_2013" /db_xref="GeneID:10104066" CDS complement(2084457..2084801) /locus_tag="Alide_2013" /inference="similar to AA sequence:KEGG:Bpro_4415" /note="KEGG: pol:Bpro_4415 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126644.1" /db_xref="GI:319762707" /db_xref="InterPro:IPR001041" /db_xref="GeneID:10104066" /translation="MHTKTQESRISLFMPEENAGGRKIRIYFDDQQLTVPEGVSVASA LLMSGVRTFRATPVSGSPRAPYCMMGVCFECLVEIDGRPSRQSCLTQVQEGMVIKRQD GASGLNIPSAEG" misc_feature complement(<2084496..2084735) /locus_tag="Alide_2013" /note="NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]; Region: NuoG; COG1034" /db_xref="CDD:31237" gene complement(2084791..2085927) /locus_tag="Alide_2014" /db_xref="GeneID:10104067" CDS complement(2084791..2085927) /locus_tag="Alide_2014" /inference="protein motif:PFAM:PF01266" /note="KEGG: pol:Bpro_4416 FAD dependent oxidoreductase; manually curated; PFAM: FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="fad dependent oxidoreductase" /protein_id="YP_004126645.1" /db_xref="GI:319762708" /db_xref="GO:0016491" /db_xref="InterPro:IPR006076" /db_xref="GeneID:10104067" /translation="MSSNGIIVVGGGLVGAAIAYGAAKSGSAVTLLDQGDVAYRASRG NFGLVWLQSKGAGFPRYARWSRDAVDHWGPLASELRELTGVDVDLQQNGGFWIGFSEK EVAEREAMLAKINAADGRTPFEMLDHRELKARLPAIGPKVAGGSWCSLDGHANPLKLL HALHAGIQALGGRICNGADVAEVCPLGEGQGFRARSSDGRQWIGEKIVLAAGLSNSVL APQLGLHAPVVPNRGQVLITERLKKFLPHPTNKARQTAEGTVQLGFSVEDVGLDDGTT VAAIEWIAKRAVATFPILSSVKLVRAWGALRVMTPDGSPIYQESARYPGAFTATSHSG VSLAGSHAYEIGPWITGVKSAPEGIEEFAGERFLDPDRKFSNAH" misc_feature complement(2085028..2085843) /locus_tag="Alide_2014" /note="FAD dependent oxidoreductase; Region: DAO; pfam01266" /db_xref="CDD:189916" gene complement(2085972..2086955) /locus_tag="Alide_2015" /db_xref="GeneID:10104068" CDS complement(2085972..2086955) /locus_tag="Alide_2015" /inference="similar to AA sequence:KEGG:Daci_0779" /note="KEGG: dac:Daci_0779 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126646.1" /db_xref="GI:319762709" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104068" /translation="MSSRIARRPFLASAIFTLLFSLGSAAQAEWPEKPIRFIVNAAAG GAADGTARVLADGLSKRLGQPIIIDNKPGASGVIGLDTVAKAAPDGYTIGNSNLATYI VTALTAKSLPYDPAKSFTPIAKQWTQPNLLGVSPTIPVKSVADLVNYAKTHPGEIFYG STGNGTALHVLGALFANLTGAQITHVPYKSAPAAELDLAAGQIQMMFSNFTSMEPQVK AGRINALAITGPNRSPMLPNVPTIREAGYPDLEMETWGGVVGPANMPPAIVEKLHREI NAVLSDPEVIKKHEKLGAKVAPVSIADYRQMLNADSARWGEVVRRNNITLN" sig_peptide complement(2086869..2086955) /locus_tag="Alide_2015" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.881 at residue 29" misc_feature complement(2085984..2086928) /locus_tag="Alide_2015" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2085984..2086802) /locus_tag="Alide_2015" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2087030..2087953) /locus_tag="Alide_2016" /db_xref="GeneID:10104069" CDS complement(2087030..2087953) /locus_tag="Alide_2016" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126647.1" /db_xref="GI:319762710" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10104069" /translation="MTSRNVTYRMIEAFRAAMLHNGISAGADSLGITQPAMSRLIADL QKSTGILLFAKSGRTIKPTEEAHALMAKVQQSFLGLEQIIDFSDQLRKQKLGQLSISA IPSIGHSIIPAVVRQLREKFPDVLISLRVASYIDVARHVKTRQADIGLTADTLSLGDL ETVAEFSSECVCIGTGKWLDPKASHIHVSEFAGKPFIASTGTFQTRLDAWLGANGVQV DAMVEASLFQSISDLCLEGLGIAVVDPMTAAKHQRRGGVALPLRPSIGYTVYATAMSD ARLSAPAKELIRLVAAASSGKHITPMHESMI" misc_feature complement(2087075..2087935) /locus_tag="Alide_2016" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(2087753..2087929) /locus_tag="Alide_2016" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2087087..2087662) /locus_tag="Alide_2016" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(2087246..2087251,2087255..2087260, 2087276..2087293,2087561..2087581,2087585..2087587, 2087597..2087599,2087606..2087611,2087615..2087620)) /locus_tag="Alide_2016" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 2088126..2089085 /locus_tag="Alide_2017" /db_xref="GeneID:10104070" CDS 2088126..2089085 /locus_tag="Alide_2017" /inference="protein motif:TFAM:TIGR03596" /note="KEGG: ajs:Ajs_2510 GTP-binding protein, HSR1-related; TIGRFAM: ribosome biogenesis GTP-binding protein YlqF; PFAM: GTP-binding protein HSR1-related" /codon_start=1 /transl_table=11 /product="ribosome biogenesis gtp-binding protein ylqf" /protein_id="YP_004126648.1" /db_xref="GI:319762711" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR016478" /db_xref="InterPro:IPR019991" /db_xref="GeneID:10104070" /translation="MSIQWFPGHMHLTRKAIGERIKDIDVVIELLDARLPGSSGNPLL AELTGHKPTLKVLNKQDVADPARTPAWLDWYNARPGTRAIALDASDAAPARRLVEACR QLAPNRRGLSRPMRVLICGIPNVGKSTLINTLSAKREAKTGDEAGVTKQEQRIVLDDD FYLWDTPGMLWPRIIVPESGYRLAASGAVGRNAYDEEEVALELLAYVKRHYASLLDAR YKLGLDAQAIGASHDDELLALIAKKRGAVMSGGRLNLQKAAEIVLTDLRSAALGRVTL EIPEEFESWLAAARLKEKERAERKAEQRKRDERRARNAPRDDG" misc_feature 2088132..2088956 /locus_tag="Alide_2017" /note="ribosome biogenesis GTP-binding protein YlqF; Region: GTPase_YlqF; TIGR03596" /db_xref="CDD:188348" misc_feature 2088138..2088635 /locus_tag="Alide_2017" /note="YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases...; Region: YlqF; cd01856" /db_xref="CDD:57927" misc_feature order(2088297..2088302,2088306..2088311,2088384..2088392, 2088492..2088512,2088627..2088629) /locus_tag="Alide_2017" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:57927" misc_feature 2088297..2088308 /locus_tag="Alide_2017" /note="G4 box; other site" /db_xref="CDD:57927" misc_feature 2088384..2088392 /locus_tag="Alide_2017" /note="G5 box; other site" /db_xref="CDD:57927" misc_feature 2088486..2088509 /locus_tag="Alide_2017" /note="G1 box; other site" /db_xref="CDD:57927" misc_feature 2088561..2088584 /locus_tag="Alide_2017" /note="Switch I region; other site" /db_xref="CDD:57927" misc_feature 2088570..2088572 /locus_tag="Alide_2017" /note="G2 box; other site" /db_xref="CDD:57927" misc_feature 2088618..2088629 /locus_tag="Alide_2017" /note="G3 box; other site" /db_xref="CDD:57927" misc_feature 2088624..2088632 /locus_tag="Alide_2017" /note="Switch II region; other site" /db_xref="CDD:57927" gene complement(2089167..2090996) /locus_tag="Alide_2018" /db_xref="GeneID:10104071" CDS complement(2089167..2090996) /locus_tag="Alide_2018" /inference="similar to AA sequence:KEGG:Dtpsy_1352" /note="KEGG: dia:Dtpsy_1352 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126649.1" /db_xref="GI:319762712" /db_xref="GeneID:10104071" /translation="MPATPPIDSAEPGTDALCEDGLPEDATLCPGEAMDATALRQLLK AALPDSSRHKAAGWFGQTDFLFTRSHVDEDQDTYHNGLFITIWKRWDFWLALPHDDPA AHASLFTQAWALLRQPAAPTVTDGLVRQYRGYGATGGPGPWQGLHDAPPEALQACAEA WRGVIGYWRRAEAQRRAGRPLRARLHAALTPERVRALTLLPVFTGRYNDWWNPERNGW WEGDVWIGARQPGQQSGRSWGRALKLSWRNGSEAPGDAEDDAHACYQIDLVDDDAPHE GTSHPPGLRLSYAQRQSDARQSLPNDAVDHMARLLRLFTTLEQRLYAEHACAQQAPPP DDQPAPPLPRTPPFAPDEPDAEVFGAQIMALSNDWQRAGRAHAALVRERWALQAERMA EPPAQDDGGAAAMPAIVDPRGAQAGAVLQLARAVHAWADADLSARFHRRFAFAPGALA YRAAHVGRAVGPVLWQADGRLLAHVSAAHGAQAGAWWEVGADGLHIAPAPQAAPAAHG NEAQDAVTAAAHGLTVRGDADGDLHGLAEDGRTLWRHHIGGAIRSIAMAPDGHALAVG TAGGYLVLLRKGSGIDPYLPGTSRYAEVRRFIFWDDAPAPLAW" gene complement(2091043..2091891) /locus_tag="Alide_2019" /db_xref="GeneID:10104072" CDS complement(2091043..2091891) /locus_tag="Alide_2019" /inference="protein motif:PFAM:PF00849" /note="KEGG: dia:Dtpsy_1355 pseudouridine synthase; manually curated; PFAM: pseudouridine synthase" /codon_start=1 /transl_table=11 /product="pseudouridine synthase" /protein_id="YP_004126650.1" /db_xref="GI:319762713" /db_xref="GO:0003723" /db_xref="GO:0009982" /db_xref="InterPro:IPR006145" /db_xref="InterPro:IPR006224" /db_xref="GeneID:10104072" /translation="MAHAAPQPGCARHGPEHHPVHAGARLLTPDATPPLHLLWQDEHM VALYKPAGWLVHRTGLDAGETRFVVQALRDQIGRHVYPVHRLDKGTCGVLVMGLHPAA ARALAGSFARHAVHKRYLALVRGWAPPLADVDHPLRPDDAPQDAPAQPAHTLLTRLAR LELPESSDPRFATTRASLVLAEPTTGRRHQIRRHLKHAAHPILGDATHGKGPLNRWWA ERLGLQRLWLHAWRLRLPHPQDGRMVTIDSGLPWPPAAAPLPCAPDAPWRDWQARVLA LPWMAA" misc_feature complement(2091142..2091789) /locus_tag="Alide_2019" /note="PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of...; Region: PseudoU_synth; cl00130" /db_xref="CDD:193668" misc_feature complement(order(2091316..2091318,2091631..2091642)) /locus_tag="Alide_2019" /note="active site" /db_xref="CDD:73252" gene complement(2091810..2092103) /locus_tag="Alide_2020" /db_xref="GeneID:10104073" CDS complement(2091810..2092103) /locus_tag="Alide_2020" /inference="similar to AA sequence:KEGG:Dtpsy_1356" /note="KEGG: dia:Dtpsy_1356 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126651.1" /db_xref="GI:319762714" /db_xref="GeneID:10104073" /translation="MGLDQIAIALLGATAAWLSQTRSALLRRWACIFGLLGQPFWFYA SWKAGQWGIFALSIVYLGAWLHGLKVYWLTPRRNRDAPDTGLSTIQFTPGRDS" gene 2092206..2093132 /locus_tag="Alide_2021" /db_xref="GeneID:10104074" CDS 2092206..2093132 /locus_tag="Alide_2021" /inference="protein motif:PFAM:PF02272" /note="PFAM: phosphoesterase DHHA1; KEGG: ajs:Ajs_2502 phosphoesterase, DHHA1" /codon_start=1 /transl_table=11 /product="phosphoesterase dhha1" /protein_id="YP_004126652.1" /db_xref="GI:319762715" /db_xref="GO:0003676" /db_xref="InterPro:IPR003156" /db_xref="GeneID:10104074" /translation="MMMSPRSAILPLPLLAAPRADDPRPLVLYHGRCADGFAAALAAW RFYGGQVQCLGLSHGQAATVDDLPPLEGRAVYVLDFSFAPALLAEIDARAARLVLLDH HKSAAEQLAGFACRCGAVHFDMAKSGARLAWEFFHPDAPLPDLVRHVEDRDLWTWQYP ETAGFVAALDMEPFDFARWSAIADFSPAETAAFVARGQAMDEKFRHLAQDVAGGARPL AFNGEAGLMVNAPGAFHSLVGELLSRQSGTYALMWAVGGDGQVKVGLRSQRGYDCSPL AVSMGGGGHAQACGFRMPAERLAELLSGSFDS" misc_feature 2092284..2093084 /locus_tag="Alide_2021" /note="Predicted phosphohydrolase (DHH superfamily) [General function prediction only]; Region: COG2404" /db_xref="CDD:32540" gene complement(2093183..2094418) /locus_tag="Alide_2022" /db_xref="GeneID:10104075" CDS complement(2093183..2094418) /locus_tag="Alide_2022" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2285 major facilitator superfamily transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126653.1" /db_xref="GI:319762716" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10104075" /translation="MTDSPADSNVYRHAGFIAFLTARLVAVFATQVQAVVVAWQVYDL TRAPMALAYVGLAQFLPMLVLLLPAGDLIDRFSRKPILAASWAAGTVCSALLWWLAGH GAAGVDGIYAVLVLFGCSRAFSAPALSSLLPQIVPRGQLAQAVAANGMIMRMATIGGP FLGGVLYAVGGARLAYAVCMACFALGTLLLARVAVDHAAPIGPALGSMFQRFGAGIRF IRSRPIILGTISLDLFAVLLGGVVALLPIYAQEVLHVGPQGLGALRSAMAIGEVGAGL YLSMRPFDHRVGRTMFAAVAVFGLANLVFSLSTVFALSFAALMVAGAADMVSVYIRGA LVQFSTPDEMRGRVNAVNMLFIGSSNELGEFRAGTSAAWVGAVPAAVLGGLCTLGVVG LWARLFPTLRRVDKFEEAA" misc_feature complement(2093204..2094385) /locus_tag="Alide_2022" /note="enterobactin exporter EntS; Provisional; Region: PRK10489" /db_xref="CDD:182495" misc_feature complement(2093330..2094295) /locus_tag="Alide_2022" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(2093339..2093341,2093348..2093353, 2093360..2093365,2093372..2093377,2093408..2093410, 2093417..2093422,2093432..2093434,2093441..2093446, 2093453..2093455,2093597..2093599,2093606..2093608, 2093615..2093617,2093627..2093629,2093639..2093641, 2093681..2093683,2093690..2093695,2093702..2093707, 2093714..2093716,2093951..2093953,2093969..2093974, 2093981..2093986,2094020..2094022,2094029..2094034, 2094041..2094046,2094053..2094058,2094209..2094214, 2094218..2094223,2094233..2094235,2094242..2094247, 2094254..2094256)) /locus_tag="Alide_2022" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(2094460..2094885) /locus_tag="Alide_2023" /db_xref="GeneID:10104076" CDS complement(2094460..2094885) /locus_tag="Alide_2023" /inference="protein motif:PFAM:PF00565" /note="KEGG: ajs:Ajs_2501 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein)" /codon_start=1 /transl_table=11 /product="nuclease (snase domain-containing protein)" /protein_id="YP_004126654.1" /db_xref="GI:319762717" /db_xref="GO:0003676" /db_xref="InterPro:IPR006021" /db_xref="GeneID:10104076" /translation="MPAAASALLCLVIAIGDGDSLTVRCGEHRPMRVRVAAIDAPERR QAFGQRARQNLALLCFRQQARLHTLGHDAYGRTLAHVRCSGQDVAAAQVRAGLAWVYR AGNRDLEQLERHARESRAGLWSQKRPMAPWDYRRRHQRD" misc_feature complement(2094511..2094858) /locus_tag="Alide_2023" /note="Staphylococcal nuclease homologues; Region: SNc; smart00318" /db_xref="CDD:128613" misc_feature complement(2094511..2094843) /locus_tag="Alide_2023" /note="Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds; Region: SNc; cl00140" /db_xref="CDD:193675" misc_feature complement(order(2094658..2094660,2094664..2094669, 2094760..2094762,2094769..2094771,2094787..2094789, 2094829..2094831)) /locus_tag="Alide_2023" /note="Catalytic site; other site" /db_xref="CDD:29137" gene 2094984..2095859 /locus_tag="Alide_2024" /db_xref="GeneID:10104077" CDS 2094984..2095859 /locus_tag="Alide_2024" /inference="protein motif:TFAM:TIGR00688" /note="TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: dia:Dtpsy_1360 RarD protein, DMT superfamily transporter" /codon_start=1 /transl_table=11 /product="rard protein, dmt superfamily transporter" /protein_id="YP_004126655.1" /db_xref="GI:319762718" /db_xref="InterPro:IPR004626" /db_xref="GeneID:10104077" /translation="MFKGLAASVAASVLFGALYYLAPLLAPLDGEQIFGWRVLCTLPF TTVLLLAQGQWPRVRLLALRAWRQPLLALGLAGSAAMLGVQLWLFLWAPLHGRALPVS LGYFLLPLVMVLAGRVLYRERLSRLQWLATLLAAAGVAHEVLRAGGMSWETWLVALGY TVYFVARRRMRTDHLGGHWLDMLLLVPAALWFVLRAPSSLPLVADNAHLWALVPVLGV VSAVALALYMAASRLLPLGLFGLLSYVEPVLLALVALLLGESIGAAQWPTYGPIFAAV AVLVVDGALRLRQRG" misc_feature 2094984..2095799 /locus_tag="Alide_2024" /note="Predicted permeases [General function prediction only]; Region: RarD; COG2962" /db_xref="CDD:32782" gene complement(2095893..2096459) /locus_tag="Alide_2025" /db_xref="GeneID:10104078" CDS complement(2095893..2096459) /locus_tag="Alide_2025" /inference="protein motif:PFAM:PF00849" /note="PFAM: pseudouridine synthase; KEGG: dia:Dtpsy_1363 pseudouridine synthase" /codon_start=1 /transl_table=11 /product="pseudouridine synthase" /protein_id="YP_004126656.1" /db_xref="GI:319762719" /db_xref="GO:0003723" /db_xref="GO:0009982" /db_xref="InterPro:IPR000748" /db_xref="InterPro:IPR006145" /db_xref="InterPro:IPR018496" /db_xref="GeneID:10104078" /translation="MKARARLIRFNKPYGVLSQFTPEGRWRGLKDFIDLPGVYVAGRL DADSEGLLLLTDSGPLQARISDPRHKMEKTYWVQVEGIPDDAALAALQRGITLNDGPT RPARVHRLEPPPALCPRDPPIRVRRNIPDSWIELVIREGRNRQVRRMTAAVGHPTLRL VRAAIGPYTLDGLAPGAWDDIETIAAGA" misc_feature complement(2095941..2096441) /locus_tag="Alide_2025" /note="PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of...; Region: PseudoU_synth; cl00130" /db_xref="CDD:193668" misc_feature complement(order(2096019..2096021,2096325..2096336)) /locus_tag="Alide_2025" /note="active site" /db_xref="CDD:73252" gene complement(2096456..2097286) /locus_tag="Alide_2026" /db_xref="GeneID:10104079" CDS complement(2096456..2097286) /locus_tag="Alide_2026" /inference="protein motif:PFAM:PF01551" /note="PFAM: Peptidase M23; KEGG: ajs:Ajs_2496 peptidase M23B" /codon_start=1 /transl_table=11 /product="peptidase m23" /protein_id="YP_004126657.1" /db_xref="GI:319762720" /db_xref="InterPro:IPR016047" /db_xref="GeneID:10104079" /translation="MLRGLGLALLPGPAVLARAATAPDAWPQALQVPGGVARLQLGPA PERPVVHAGDVPVLVLGDSIAWMALVGIPLSAPVGQAHVTVQAAAGAPGRRIAYRVAP KQYREQRLTVAPRTVDLAPEDLARHERERAHQQQVMATFSTPLPDELQMRQPVPGPRS SSFGLRRVFNGQARNPHSGMDIAAATGTPIVAPLPGRVIDVGDYFFNGGTVWLDHGGG LLTMYCHLSRVDCQVGDRLRTGDAFCKVGATGRVTGPHLHWGVMLNRTMVDPALFLPA " sig_peptide complement(2097227..2097286) /locus_tag="Alide_2026" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.982 at residue 20" misc_feature complement(2096462..>2097049) /locus_tag="Alide_2026" /note="Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739" /db_xref="CDD:31082" misc_feature complement(2096477..2096761) /locus_tag="Alide_2026" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene 2097559..2098962 /locus_tag="Alide_2027" /db_xref="GeneID:10104080" CDS 2097559..2098962 /locus_tag="Alide_2027" /inference="protein motif:PFAM:PF00206" /note="PFAM: fumarate lyase; Fumarase C-like; KEGG: dia:Dtpsy_1365 fumarate lyase" /codon_start=1 /transl_table=11 /product="fumarate lyase" /protein_id="YP_004126658.1" /db_xref="GI:319762721" /db_xref="GO:0003824" /db_xref="GO:0016829" /db_xref="InterPro:IPR000362" /db_xref="InterPro:IPR018951" /db_xref="InterPro:IPR020557" /db_xref="GeneID:10104080" /translation="MRQEHDFIGIKTIPPDAYWGVHTARAVENFPITGHTVAQMPALI RAFAFVKKAAAHANLQLGAISTTQADAIAKACDDLIAGQLHEQFVTDVIQGGAGTSTN MNANEVIANRALEHLGLPKGSYDVIHPNDHVNASQSTNDTYPTAVKIATYFGIQELLG ALAALRGAFEAKALEFAGILKIGRTQLQDAVPMTLGQEFAAFASMIADDERRLRESAY LMAEVNMGGTAIGTGINAPLGYVDAVVPKLAELSGVPVRAAANLIAATSDTGAFVDIS GVLKRIAAKLSKISNDLRLLSSGPQAGVADIRLPARQAGSSIMPGKVNPVIPEAMNQV CFEVIGNDAAITMACEAGQLQLNAFEPLVAWALHKSLHHLARACRTLQVNCVEGIAAN QGLLDERIAASVTLVTALNPVIGYEKAAAIAKAAIATGKPIAEVAEDLGIMGRAEMQK LLVAERLTQAGAIKAVH" misc_feature 2097559..2098941 /locus_tag="Alide_2027" /note="aspartate ammonia-lyase; Provisional; Region: aspA; PRK12273" /db_xref="CDD:183393" misc_feature 2097562..2098914 /locus_tag="Alide_2027" /note="Aspartase; Region: Aspartase; cd01357" /db_xref="CDD:176462" misc_feature order(2097844..2097855,2097970..2097978,2098111..2098116, 2098522..2098524,2098528..2098530,2098543..2098545) /locus_tag="Alide_2027" /note="active sites [active]" /db_xref="CDD:176462" misc_feature order(2098108..2098119,2098129..2098131,2098147..2098152, 2098168..2098170,2098180..2098182,2098192..2098194, 2098246..2098248,2098336..2098341,2098348..2098350, 2098357..2098362,2098366..2098368,2098375..2098380, 2098387..2098389,2098396..2098401,2098408..2098413, 2098417..2098422,2098429..2098434,2098582..2098584, 2098606..2098608,2098615..2098623,2098780..2098782) /locus_tag="Alide_2027" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176462" gene complement(2099035..2099841) /locus_tag="Alide_2028" /db_xref="GeneID:10104081" CDS complement(2099035..2099841) /locus_tag="Alide_2028" /inference="protein motif:PFAM:PF03724" /note="PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: dac:Daci_2483 protein of unknown function DUF306 MetA and HslJ" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126659.1" /db_xref="GI:319762722" /db_xref="InterPro:IPR005184" /db_xref="GeneID:10104081" /translation="MNDKQALKTLAALALAALVGACASAPPQTPAPMPSTTAQNGAPS LASHDWNLTAAFDAQGRSDGSWLLAGHTPMQLHFEGQRLSVRNLCNMLGASFGTQGGD MQLGRPVSTMRACADKDLMRLEQRVGAQLPTVTRYQLNAGGTPQLQLFFADGSRWELA GQPTPQTQYGGPGERMFLEVAPERVACSHGVMKNAQCLRVREIRYGDNGAKTHVGQWQ VFYDEVQGYTHEPGMRNVLRINRFKRQNPPADASAYVYMLDMVVESERMK" sig_peptide complement(2099767..2099841) /locus_tag="Alide_2028" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.626 at residue 25" misc_feature complement(2099392..2099709) /locus_tag="Alide_2028" /note="META domain; Region: META; cl01245" /db_xref="CDD:194076" gene complement(2099907..2100446) /locus_tag="Alide_2029" /db_xref="GeneID:10104082" CDS complement(2099907..2100446) /locus_tag="Alide_2029" /inference="protein motif:PFAM:PF06041" /note="PFAM: protein of unknown function DUF924; KEGG: dia:Dtpsy_3311 protein of unknown function DUF924" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126660.1" /db_xref="GI:319762723" /db_xref="InterPro:IPR010323" /db_xref="GeneID:10104082" /translation="MTPESILHFWFEELSAPQHFAKDAALDAAIARRFGATLQAAASG ELSGWRQSARGRLAEIVVLDQFSRNVYRDTPRAFAQDGMALVLAQELVASGQAGALPP AQRAFAYMPYMHSESRVVQAQSVRLFAEPGLEGNLPFALQHRAIIERFGRYPHRNAIL GRESSGEELAFLREPGSSF" misc_feature complement(2099916..2100431) /locus_tag="Alide_2029" /note="Bacterial protein of unknown function (DUF924); Region: DUF924; cl01561" /db_xref="CDD:194164" gene complement(2100464..2102275) /locus_tag="Alide_2030" /db_xref="GeneID:10104083" CDS complement(2100464..2102275) /locus_tag="Alide_2030" /inference="protein motif:TFAM:TIGR00440" /note="KEGG: ajs:Ajs_1608 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain" /codon_start=1 /transl_table=11 /product="glutaminyl-tRNA synthetase" /protein_id="YP_004126661.1" /db_xref="GI:319762724" /db_xref="GO:0000166" /db_xref="GO:0004819" /db_xref="GO:0005524" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR004514" /db_xref="InterPro:IPR020058" /db_xref="InterPro:IPR020059" /db_xref="InterPro:IPR020060" /db_xref="GeneID:10104083" /translation="MSTPVHNDSTDTVKPSNFLRQIIEADLAQGTHARNRWAGSPGDA AHQGAGPADPAKIRTRFPPEPNGYLHVGHAKSICLNFGLARDYGGVCHLRFDDTNPEK EDQEYVDGIIDAVHWLGFDWKDPDGHENLYYASNYFGFMYRAAEYLIEAGHAYVDEQT PEEMRANRGDFGRPGVDSPYRSRTPAENLARFRDMKDGKLPDGAAVLRAKIDMASPNI NLRDPAIYRIKHAEHHNTGNAWCIYPMYTFAHPVEDALECITHSICTLEFEDQRPFYD WLLDRLAEGGLIATPQPRQYEFARLNLTYVVTSKRKLKHLVDNGIVSGWDDPRMPTIV GLRRRGYTPESIQMFCERIGVTKDYSWIDYATLEGCLREDLEAKAHRAMVALDPLRLE LTNWAEVFGSADHLEHCSLPALPHSHDGAHEGAPERRFTLGREVWIEREDFEEVPPKG YKRLFPGNRVRLKGGYVIECTGCEKDAEGRVAKVLATVVPDTKSGTPGADSVKVKAAI TWVGVQDGLQAEVRLYDRLFTDAQPDAGGKDFLALLNPDSLKVVNAYVEPSLAAARPD GKFQFERFGYFVADRKDHAPGRPVFNRITGLKDSWGK" misc_feature complement(2100467..2102257) /locus_tag="Alide_2030" /note="glutaminyl-tRNA synthetase; Provisional; Region: PRK05347" /db_xref="CDD:180031" misc_feature complement(<2101742..2102110) /locus_tag="Alide_2030" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(2102057..2102068) /locus_tag="Alide_2030" /note="active site" /db_xref="CDD:173912" misc_feature complement(2102057..2102068) /locus_tag="Alide_2030" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature complement(order(2102057..2102059,2102066..2102068)) /locus_tag="Alide_2030" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(2101133..>2101579) /locus_tag="Alide_2030" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(2101340..2101351) /locus_tag="Alide_2030" /note="active site" /db_xref="CDD:173912" misc_feature complement(2101340..2101351) /locus_tag="Alide_2030" /note="KMSKS motif; other site" /db_xref="CDD:173912" misc_feature complement(2100536..2101141) /locus_tag="Alide_2030" /note="tRNA synthetases class I (E and Q), anti-codon binding domain; Region: tRNA-synt_1c_C; pfam03950" /db_xref="CDD:190806" gene 2102415..2102753 /locus_tag="Alide_2031" /db_xref="GeneID:10104084" CDS 2102415..2102753 /locus_tag="Alide_2031" /inference="similar to AA sequence:KEGG:Dtpsy_2105" /note="KEGG: dia:Dtpsy_2105 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126662.1" /db_xref="GI:319762725" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10104084" /translation="MTQRRSWFAVAASAGVALALMAGAGAAQARSDVYWSVGVGAPGV ALGVGNAAPVYYAPPPPVYYAPPPVVYAPPRPVYYAPPPPVVYVPPVGYYQRGWGGHH HHHHGRRDWR" sig_peptide 2102415..2102504 /locus_tag="Alide_2031" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.774 at residue 30" gene 2102862..2103311 /locus_tag="Alide_2032" /db_xref="GeneID:10104085" CDS 2102862..2103311 /locus_tag="Alide_2032" /EC_number="4.2.1.10" /inference="protein motif:TFAM:TIGR01088" /note="TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: ajs:Ajs_1610 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II" /codon_start=1 /transl_table=11 /product="3-dehydroquinate dehydratase, type ii" /protein_id="YP_004126663.1" /db_xref="GI:319762726" /db_xref="GO:0003855" /db_xref="InterPro:IPR001874" /db_xref="InterPro:IPR018509" /db_xref="GeneID:10104085" /translation="MTTKTVYVLNGPNLNLLGTREPQVYGSQTLADVEQICAAACTRH GLALVFRQSNHEGALVDWIHEAGRLHAEGKLAGVVLNAAAYTHTSVALLDAVKGTGVP LVELHISNVHARESFRHRSYLAGAARAVMCGFGVQGYALAIAGVAQW" misc_feature 2102874..2103305 /locus_tag="Alide_2032" /note="Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway...; Region: DHQase_II; cd00466" /db_xref="CDD:63885" misc_feature order(2102898..2102900,2102904..2102906,2103021..2103035, 2103042..2103044,2103051..2103053,2103111..2103113, 2103132..2103134,2103141..2103146,2103153..2103155, 2103213..2103215) /locus_tag="Alide_2032" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:63885" misc_feature order(2102919..2102921,2102934..2102936,2103102..2103104, 2103108..2103113,2103120..2103122,2103141..2103143, 2103180..2103188,2103213..2103215) /locus_tag="Alide_2032" /note="active site" /db_xref="CDD:63885" misc_feature order(2103189..2103191,2103195..2103200,2103231..2103236, 2103240..2103251,2103255..2103263,2103270..2103272, 2103282..2103284,2103294..2103296,2103303..2103305) /locus_tag="Alide_2032" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:63885" gene 2103305..2104198 /locus_tag="Alide_2033" /db_xref="GeneID:10104086" CDS 2103305..2104198 /locus_tag="Alide_2033" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_2103 alpha/beta hydrolase fold protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004126664.1" /db_xref="GI:319762727" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR000639" /db_xref="GeneID:10104086" /translation="MVTARALATLPVPAQVLALERQARRETTPCGAGDMVWHAWGTPR DGVPPLVLLHGGSGSWTHWVRNIADLMDAGRELWIPDLPGFGDSASPASGGDADALAG PMAEGLRTLFGPRQCDLVGFSFGGLTAGLLLAAHPEVARQLVVVGAPAMGVVPQRQVA LKAWRHLPEAAQIAAHRYNLAALMLKDEALIDALDGLALGLHVANVVRDRMPRRRLAH TDALARALSRVDCPVHAIYGRSDALYKEWIGALEGAYAAAAPDFRGLALIDDAGHWVQ FERPQAFMQALLAALRAGAGK" misc_feature 2103452..2104153 /locus_tag="Alide_2033" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 2104195..2104620 /locus_tag="Alide_2034" /db_xref="GeneID:10104087" CDS 2104195..2104620 /locus_tag="Alide_2034" /inference="protein motif:PFAM:PF00472" /note="PFAM: Class I peptide chain release factor; KEGG: dia:Dtpsy_2102 class I peptide chain release factor" /codon_start=1 /transl_table=11 /product="class i peptide chain release factor" /protein_id="YP_004126665.1" /db_xref="GI:319762728" /db_xref="GO:0003747" /db_xref="InterPro:IPR000352" /db_xref="GeneID:10104087" /translation="MTERHCPPALRVDPAEVELTAMRAQGAGGQNVNKVSSAVHLRFD IVASSLPGDVKQRLLALRDSRITQQGVLVIKAQQYRTQEANRLDALARLQALVDSVAR PPRVRRATRPTLGSQQRRLEAKSRRAGIKALRGRTAAPD" misc_feature 2104216..2104602 /locus_tag="Alide_2034" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" gene 2104722..2105558 /locus_tag="Alide_2035" /db_xref="GeneID:10104088" CDS 2104722..2105558 /locus_tag="Alide_2035" /inference="protein motif:PFAM:PF02900" /note="PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B" /codon_start=1 /transl_table=11 /product="extradiol ring-cleavage dioxygenase class iii protein subunit b" /protein_id="YP_004126666.1" /db_xref="GI:319762729" /db_xref="GO:0008198" /db_xref="GO:0016491" /db_xref="InterPro:IPR004183" /db_xref="InterPro:IPR014436" /db_xref="GeneID:10104088" /translation="MTTDTVSPSTGPGALPALFVSHGAPLFALEPGSTGPALARWAAG LRRSHPGLRGVVIMSPHWMERGATVMTGARPATWHDFGGFPPALYALQYPAAGDPALA GQVLDLLRQAGIAAQGDAERPFDHGAWVPLMHLFPQADLPVVQVALPVGAGPAEVHAM GAALHGLRAQGVLVVGSGSMTHNLREFFGGGHERAPYVLEFSRWIEAAVERGDLPALL DYRRQAPHAQRAHPTEDHFLPLFFALGVAGEGWGAEYLSREVMYGMLAMDAFALHAPA AA" misc_feature 2104767..2105537 /locus_tag="Alide_2035" /note="The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine; Region: 45_DOPA_Dioxygenase; cd07363" /db_xref="CDD:153375" misc_feature 2104767..2105465 /locus_tag="Alide_2035" /note="Catalytic LigB subunit of aromatic ring-opening dioxygenase; Region: LigB; pfam02900" /db_xref="CDD:111754" misc_feature order(2104785..2104793,2104902..2104904,2105097..2105099, 2105265..2105267,2105427..2105429,2105511..2105516) /locus_tag="Alide_2035" /note="putative active site [active]" /db_xref="CDD:153375" misc_feature order(2104785..2104787,2104902..2104904,2105427..2105429) /locus_tag="Alide_2035" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:153375" gene 2105555..2106250 /locus_tag="Alide_2036" /db_xref="GeneID:10104089" CDS 2105555..2106250 /locus_tag="Alide_2036" /inference="protein motif:PFAM:PF02230" /note="PFAM: phospholipase/Carboxylesterase; KEGG: vei:Veis_2297 phospholipase/carboxylesterase" /codon_start=1 /transl_table=11 /product="phospholipase/carboxylesterase" /protein_id="YP_004126667.1" /db_xref="GI:319762730" /db_xref="GO:0016787" /db_xref="InterPro:IPR003140" /db_xref="GeneID:10104089" /translation="MIAPLHRDTPAMLDLPFTCLHRPANSAVRHPWLLVLMHGVGSNE HDLFGLTPQIPEHFHVLSLRAPFRMGPGAFAWFDFSIEPGGERTIDEAQEAHSRALLE QAVPSAARQLGVEPGRTVVGGFSQGGIMALSLLLTRPGLMHAGLVWHGRLLAQAVPYI ASADAFHGKHLRVSHGTHDNVIPLAHAQAIRRQVQALPLHLSYEEFAGAHEIRQAELA HTVAWLQGLSGAA" misc_feature 2105651..2106241 /locus_tag="Alide_2036" /note="Predicted esterase [General function prediction only]; Region: COG0400" /db_xref="CDD:30749" misc_feature 2105651..>2106145 /locus_tag="Alide_2036" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 2106431..2107309 /locus_tag="Alide_2037" /db_xref="GeneID:10104090" CDS 2106431..2107309 /locus_tag="Alide_2037" /inference="similar to AA sequence:KEGG:Ajs_1615" /note="KEGG: ajs:Ajs_1615 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126668.1" /db_xref="GI:319762731" /db_xref="GeneID:10104090" /translation="MPERDPAEYRPRPESSTSWAVAAVVAAAVAAGAAWWFWWRLAQA PAPVVAPPPEAAASAPMAEASGPQHPIAAQADAGPLPPLAESDAWVAKALGELLGAER VGRFLLTDGFVRRAVATVDNLPRAQAPARLWPVQPAPQRFLVEGPPGAQAIAPANAAR YQAFVAFAEAVPPDAAVALYARLYPLFQAAYEELGYPGKYFNDRLVAVLDHLLAAPAP QGPLAVQLTQVRGEVPSTRPWVRYEFADPQLEALSSGQKMLVRMGPDNARRLKAVLAE LRRRVVTGEVARRPAE" misc_feature 2106761..2107267 /locus_tag="Alide_2037" /note="Protein of unknown function (DUF3014); Region: DUF3014; pfam11219" /db_xref="CDD:151661" gene complement(2107328..2107798) /locus_tag="Alide_2038" /db_xref="GeneID:10104091" CDS complement(2107328..2107798) /locus_tag="Alide_2038" /inference="protein motif:PFAM:PF01037" /note="KEGG: ajs:Ajs_1616 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type" /codon_start=1 /transl_table=11 /product="transcription regulator asnc-type-like protein" /protein_id="YP_004126669.1" /db_xref="GI:319762732" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000485" /db_xref="InterPro:IPR019887" /db_xref="InterPro:IPR019888" /db_xref="GeneID:10104091" /translation="MKLDALDLRILAELQADGSLSNVELARRVHLSPSPCLARVKALE AAGVIQRYVALANPAALGLGLNVFISISLKSQSKEALAAFEQRIAEHDPVMECYLMTG DSDYLIRVALPDIAALERFILEQLTPIPGIEKIRTSFTLKQVRYKTALPLPAAR" misc_feature complement(2107343..2107798) /locus_tag="Alide_2038" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(2107466..2107792) /locus_tag="Alide_2038" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 2107902..2110529 /locus_tag="Alide_2039" /db_xref="GeneID:10104092" CDS 2107902..2110529 /locus_tag="Alide_2039" /inference="protein motif:TFAM:TIGR00759" /note="KEGG: ajs:Ajs_1617 2-oxoacid dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; alpha-ketoglutarate dehydrogenase; PFAM: Transketolase domain-containing protein; Transketolase central region" /codon_start=1 /transl_table=11 /product="2-oxo-acid dehydrogenase e1 subunit, homodimeric type" /protein_id="YP_004126670.1" /db_xref="GI:319762733" /db_xref="GO:0016491" /db_xref="InterPro:IPR004660" /db_xref="InterPro:IPR005474" /db_xref="InterPro:IPR005475" /db_xref="InterPro:IPR017600" /db_xref="GeneID:10104092" /translation="MNAPHPPFALRDDADPQETAEWRDAFLALVAAEGPGRARFVLDE LARLARAQRVGWRPDLNTPYVNTVAAQDQPAFPGDLAIEERLASIMRWNALAMVVRAN QAYGELGGHIASYASAADLFETGFNHFFHAREGLGAGQHRGDLVFFQPHSAPGVYARA FLEGRLSEQDLMHYRQEITAPQARARGLSSYPHPWLMPDFWQFPTGSMGIGPISSIYH ARFMRYLTHRNLLDCTGRKVWGVFGDGEMDEPESMSALTLAAREGLDNLVWVVNCNLQ RLDGPVRGNGRIVDELERLFAGAGWNVVKLLWGSDWDGLFARDLTGTLARTLGTTVDG QMQTFAAKDGRFNRDHFFGQNPELAALAQGLTDEQIDRLKRGGHDLVKIHAAYAAAAA HRGQPTVILAHTKKGYGMGQAGQGKMTTHSQKKLDDADLIEFRNRFNLPLTDEQATGL AFYKPLDDSPEMQYLRSHRRRLGGWLPRRETACDALPVPPLEQYAQFALAADGKEMST TMAFVRMLGALLKDATLGPRIVPIVADEARTFGMANLFKQVGIYSSVGQRYAPEDIGS VLSYREALDGQILEEGISEAGAIASWTAAATSYSVHGLAMLPFYIYYSMFGFQRVGDA IWAAADQRARGFLLGATSGRTTLGGEGLQHQDGSSHLVAATIPNCKAYDPAHAGELSV ILDAGMREMMVEQKDVFYYVTLMNENYAQPDLPAAAHEGVLRGCYVLDSCQRLLDKPE SPISCEKHVTLLSSGAILTEAARAAALLAAEGIAATVVSVTSWSELARDGMACEQGGG TPWIARVLAGTRGPIVAATDYVRAVPESVRAYLPEGRRYRTLGTDGFGRSDTRAALRG FFGVDAARIAQAAREALAS" misc_feature 2107902..2110484 /locus_tag="Alide_2039" /note="2-oxoacid dehydrogenase subunit E1; Provisional; Region: PRK13012" /db_xref="CDD:183840" misc_feature 2108139..2109323 /locus_tag="Alide_2039" /note="Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative...; Region: TPP_E1_EcPDC_like; cd02017" /db_xref="CDD:48180" misc_feature order(2108217..2108225,2108424..2108435,2108469..2108474, 2108478..2108480,2108484..2108486,2108511..2108513, 2108517..2108525,2108643..2108654,2108661..2108663, 2108670..2108672,2108682..2108684,2108730..2108738, 2108748..2108750,2108772..2108774,2108781..2108786, 2108793..2108795) /locus_tag="Alide_2039" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48180" misc_feature order(2108241..2108243,2108346..2108348,2108352..2108354, 2108517..2108519,2108523..2108525,2108631..2108639, 2108646..2108648,2108721..2108723,2108727..2108729, 2109117..2109119) /locus_tag="Alide_2039" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48180" gene complement(2110546..2111832) /locus_tag="Alide_2040" /db_xref="GeneID:10104093" CDS complement(2110546..2111832) /locus_tag="Alide_2040" /inference="protein motif:PFAM:PF01425" /note="PFAM: Amidase; KEGG: bpt:Bpet0082 amidase" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_004126671.1" /db_xref="GI:319762734" /db_xref="GO:0043565" /db_xref="InterPro:IPR000120" /db_xref="GeneID:10104093" /translation="MESPNRLSVLQALRAMAEGSLTSEALTQACLERIEERNGQVLAF TAVDAGWALAQARAADRGGGGAPLRGIPFAVKDVLDTRHLATAYGSPIYAGHRPVADA ACVARVREFGGLVLGKAATSEFATQTPSRTRNPLNLEHTPGGSSSGSAAAVADFMAPV AFGTQTTASTVRPASYCGIVGYKPTFGFLNTAGLKPLSPSQDTITLLARTVQDAALCA FGLHGMRVQAGPLERPRLAVCLSSQWDAVRPEMAEAIERIAAAAQRAGATVRRMRLPA ALEPLIGMQGRLFAFEARQSLAYERQNHAAQFSPRLQARLAGGEGIDAAQYLAMRQRA LAGRQVLADLFGDVDAILYPPAQGEADEGIADSGSAQFGALWSLMHVPCVCVPIARGP RGLPMGVQAIGAYGDDLRTLQAAAFIHHVAQQAELA" misc_feature complement(2110576..2111832) /locus_tag="Alide_2040" /note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154" /db_xref="CDD:30503" misc_feature complement(2110597..2111760) /locus_tag="Alide_2040" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene complement(2111841..2112704) /locus_tag="Alide_2041" /db_xref="GeneID:10104094" CDS complement(2111841..2112704) /locus_tag="Alide_2041" /inference="similar to AA sequence:KEGG:Aave_3937" /note="manually curated; KEGG: aav:Aave_3937 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126672.1" /db_xref="GI:319762735" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104094" /translation="MQRRFNLSSHHSPVRATKSRFFAPRGWWFSQLPSADGNIGAAYA AAAAPDGYTLMMGAASTNAINPSLHKNLKFNAIKDFAPITNVASMPNVLVVGPQVTAR SVRDFIQAAKTEKYSFASSGAGGSMHLSGELFKSMAQIPDFLHIPYKGGSAPVTDVMG GRVSAMFCNLPLCLQHIRAGKLQALGVTSSRRTPLLPEVPTIAESGVPGYEVEGWFGL FAPTGVPRPIIQRLNHEVVRILQDPKVKESLLAQGAEPIGDSPEAFAAFVKKEHDRWA RTIREAGIAPQ" misc_feature complement(2111853..2112608) /locus_tag="Alide_2041" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2112728..2113132) /locus_tag="Alide_2042" /db_xref="GeneID:10104095" CDS complement(2112728..2113132) /locus_tag="Alide_2042" /inference="protein motif:PFAM:PF08765" /note="PFAM: Mor transcription activator domain protein; KEGG: bbr:BB3657 phage-related DNA-binding protein" /codon_start=1 /transl_table=11 /product="mor transcription activator domain protein" /protein_id="YP_004126673.1" /db_xref="GI:319762736" /db_xref="InterPro:IPR014875" /db_xref="GeneID:10104095" /translation="MKNELSRALLKRHELFAELLDVVARQLVELGICADQAQLVAAFI VDFLGAYWAGQSITFPKDEHYQLTLKELEAWDMYTGNNLDQVARRFKMTPRGMRKLLD RIRERIKAWREAGAAPGQLDLLGDLQPDFEDS" misc_feature complement(2112797..2113102) /locus_tag="Alide_2042" /note="Mor transcription activator family; Region: Mor; cl02360" /db_xref="CDD:121262" gene complement(2113122..2113802) /locus_tag="Alide_2043" /db_xref="GeneID:10104096" CDS complement(2113122..2113802) /locus_tag="Alide_2043" /inference="similar to AA sequence:KEGG:CV_2164" /note="KEGG: cvi:CV_2164 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126674.1" /db_xref="GI:319762737" /db_xref="GeneID:10104096" /translation="MTTTTSKPSADAGRARYIKLIHVARRDLERAGRLDEPGYRDILR AASNGRHDSTATMSYTQLKAAFERFQRAGFQSRSAAGQRRQAVSPDASKVRALWLFLH ALGAVKDPSEKALAAYVKRIAKVDDLHWASGRAIDTLIETLKKWAMRSLPAAVAALRQ EVIAAHRATPMTADQAELAQRAHMYLLRGQGFDMHWWAWECLMLALDRPILAHLSALR TKEAHGEE" misc_feature complement(2113356..2113703) /locus_tag="Alide_2043" /note="Protein of unknown function (DUF1018); Region: DUF1018; cl01815" /db_xref="CDD:154603" gene complement(2113870..2114142) /locus_tag="Alide_2044" /db_xref="GeneID:10104097" CDS complement(2113870..2114142) /locus_tag="Alide_2044" /inference="protein motif:PFAM:PF00216" /note="KEGG: aav:Aave_1666 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein" /codon_start=1 /transl_table=11 /product="histone family protein DNA-binding protein" /protein_id="YP_004126675.1" /db_xref="GI:319762738" /db_xref="GO:0003677" /db_xref="InterPro:IPR000119" /db_xref="GeneID:10104097" /translation="MNKSDLIERMASDADISKAAAERALESFTTAVQTTLKKGGTVAL VGFGSWSVTKRAARVGRNPKTGEALKIKARKAPKFTPGKAFKDALN" misc_feature complement(2113879..2114139) /locus_tag="Alide_2044" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature complement(order(2113879..2113881,2113900..2113902, 2113906..2113908,2113918..2113923,2113987..2113989, 2114002..2114007,2114014..2114028,2114038..2114043, 2114050..2114055,2114062..2114064,2114104..2114106, 2114116..2114118,2114125..2114127,2114134..2114139)) /locus_tag="Alide_2044" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" misc_feature complement(order(2113894..2113896,2113903..2113905, 2113909..2113911,2113921..2113923,2113951..2113962, 2113969..2113971,2113975..2113980,2113984..2113986, 2113996..2113998,2114005..2114010,2114014..2114016, 2114020..2114022,2114065..2114067,2114131..2114139)) /locus_tag="Alide_2044" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" gene complement(2114317..2114556) /locus_tag="Alide_2045" /db_xref="GeneID:10104098" CDS complement(2114317..2114556) /locus_tag="Alide_2045" /inference="similar to AA sequence:KEGG:Aave_4127" /note="KEGG: aav:Aave_4127 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126676.1" /db_xref="GI:319762739" /db_xref="GeneID:10104098" /translation="MTNTYIQILGSAFGVLGALLLAMPAMPGWGFGAFVVSNVAWLIA SAWQRQWPLHLQQWVFLFCSLLGLWNWWLEPLLTG" sig_peptide complement(2114464..2114556) /locus_tag="Alide_2045" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.281 at residue 31" gene complement(2114553..2114777) /locus_tag="Alide_2046" /db_xref="GeneID:10104099" CDS complement(2114553..2114777) /locus_tag="Alide_2046" /inference="similar to AA sequence:KEGG:Bpro_3763" /note="KEGG: pol:Bpro_3763 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126677.1" /db_xref="GI:319762740" /db_xref="GeneID:10104099" /translation="MSKPAMLQINARGSWRNVCEFDVADADATDRIMEAAATLAAYST DKPSVRVVKDEAGYAVPLMRWTQDGGWRRA" gene complement(2114774..2115160) /locus_tag="Alide_2047" /db_xref="GeneID:10104100" CDS complement(2114774..2115160) /locus_tag="Alide_2047" /inference="similar to AA sequence:KEGG:Pnap_3330" /note="KEGG: pna:Pnap_3330 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126678.1" /db_xref="GI:319762741" /db_xref="GeneID:10104100" /translation="MSTSTTYRVAAVWFGDAEVTLQVDLDVLTPELAAEINGFWSGDD DRLRAEDGNVLLAVIRMFGQVAIRYLMADGGASFGPSDDPYWTEQIIRDQGEGWPDWQ ELGILVTAAEVSAVGYDDVTLEAVAV" misc_feature complement(2114783..2115112) /locus_tag="Alide_2047" /note="Protein of unknown function (DUF2528); Region: DUF2528; pfam10800" /db_xref="CDD:151250" gene complement(2115160..2115414) /locus_tag="Alide_2048" /db_xref="GeneID:10104101" CDS complement(2115160..2115414) /locus_tag="Alide_2048" /inference="similar to AA sequence:KEGG:GL50803_88750" /note="KEGG: gla:GL50803_88750 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126679.1" /db_xref="GI:319762742" /db_xref="GeneID:10104101" /translation="MSRVINAFQSVRPRAAVAAPVYQPLPRGRGSDIQLSGSVPRVLN VNGRPMATLAPRIYGGGPVLSRAQSQAQNDKTRAIVKGGI" gene complement(2115402..2115560) /locus_tag="Alide_2049" /db_xref="GeneID:10104102" CDS complement(2115402..2115560) /locus_tag="Alide_2049" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126680.1" /db_xref="GI:319762743" /db_xref="GeneID:10104102" /translation="MRAATPIDRAKASMGYQNANQWRCTKGGFGVAAQAVCNEHQPYR EGGAACPA" gene complement(2115560..2116108) /locus_tag="Alide_2050" /db_xref="GeneID:10104103" CDS complement(2115560..2116108) /locus_tag="Alide_2050" /inference="similar to AA sequence:KEGG:Bpro_3759" /note="KEGG: pol:Bpro_3759 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126681.1" /db_xref="GI:319762744" /db_xref="GeneID:10104103" /translation="MATLQEIQQRATALSECRDLLSALFLTLQGNLDTVKNGSMAEIK RVARKVAKEHNELVALINANPELFQKPRTYVVEGIKFGLQASQGSLEWADDDKVCERI AALAEAGDIPADQVDLLVTVSKKPVASAIRQLSPDLRRRIGVRLEGDGDQPLIKSVDS NIEKAVTSVINAAIKEAQAEGV" gene complement(2116121..2116405) /locus_tag="Alide_2051" /db_xref="GeneID:10104104" CDS complement(2116121..2116405) /locus_tag="Alide_2051" /inference="similar to AA sequence:KEGG:BQ10670" /note="KEGG: bqu:BQ10670 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126682.1" /db_xref="GI:319762745" /db_xref="GeneID:10104104" /translation="MSQTNAESQALTPAQFQEQALLLAKEIVDKVLRQQQPLRTTVVM EALIALYCYHARSLPPEAMGDVAMALAGVAGEFLKASSTPQSAPAGAPIH" gene complement(2116402..2117022) /locus_tag="Alide_2052" /db_xref="GeneID:10104105" CDS complement(2116402..2117022) /locus_tag="Alide_2052" /inference="similar to AA sequence:KEGG:Lcho_2277" /note="KEGG: lch:Lcho_2277 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126683.1" /db_xref="GI:319762746" /db_xref="GeneID:10104105" /translation="MAVWVNSCPACGAEESLDVMFQRVIDDDVARRAIHDVVIKSLPL GVLLIRYVGLHKPPKQRLRMSRLRELLVELVGDMQRNVIERHGRTWAVTNDDWRGAFE AVFAAVEKGSLQLPLQGNGYLYQVLSRKADQVEAAQEAQRESERRTAGRAHSSAAPTS VGELLAAAPAAAPTAAPRPAAPTPAPGMSPTVRAMRAQLERSKGQQ" gene complement(2117022..2117261) /locus_tag="Alide_2053" /db_xref="GeneID:10104106" CDS complement(2117022..2117261) /locus_tag="Alide_2053" /inference="similar to AA sequence:KEGG:Glov_0377" /note="KEGG: glo:Glov_0377 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126684.1" /db_xref="GI:319762747" /db_xref="GeneID:10104106" /translation="MDRHFYVLVLYILAWLAVSIAYVMLALTMALARAGYDARLDRVH AAGMELGQQMCLGLRPEAERRPAPRPAGRAPGGLL" sig_peptide complement(2117163..2117261) /locus_tag="Alide_2053" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.722) with cleavage site probability 0.297 at residue 33" gene complement(2117261..2117413) /locus_tag="Alide_2054" /db_xref="GeneID:10104107" CDS complement(2117261..2117413) /locus_tag="Alide_2054" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126685.1" /db_xref="GI:319762748" /db_xref="GeneID:10104107" /translation="MRRYLLIICMDDGSKGQMRGMFRNDWEAIDTILGSGLEHVAAVV ARREAP" gene complement(2117416..2118708) /locus_tag="Alide_2055" /db_xref="GeneID:10104108" CDS complement(2117416..2118708) /locus_tag="Alide_2055" /inference="similar to AA sequence:KEGG:SG0822" /note="KEGG: sgl:SG0822 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126686.1" /db_xref="GI:319762749" /db_xref="GeneID:10104108" /translation="MNPCGPLAACVLCEVPAMLNLREDLATVNSSQSALARHIGVSPA AVTQIIKYDIWPATRGLSEKLLKERISAYLTAKGLPAERLARTFDEAPAAPRANAELQ AMAKANNSGPRPGDTQGEDPFMLLRHHSLSSAARQHFKVLRDPFVNELNEDADVFITE DIRYVRAAMRHTAKHGGMLAVVAESGGGKSTLRQDLIDWINTMGEPITVIEPYVIGME DSERKGKALKATDITGAVIRAVSPGTPLHQVLQDRAAQMHNILKGSAQVGRRHVLIIE EAHALAVPTLKHLKRFYELQDGFKKLLSIILVGQTELEKKLSEHNPEVREVVQRCEMV KLSPLDNHVEGYLRHKFERVGLKLEAVFAPDAVEAIRSTLRQSVTETVRGQRQAREQS LCYPLAINNLVTRAMNEAVKIGAPQVNAALIQAAVRGN" misc_feature complement(2117431..2118297) /locus_tag="Alide_2055" /note="Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]; Region: ExeA; COG3267" /db_xref="CDD:33078" misc_feature complement(2117599..2118180) /locus_tag="Alide_2055" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene complement(2118668..2120488) /locus_tag="Alide_2056" /db_xref="GeneID:10104109" CDS complement(2118668..2120488) /locus_tag="Alide_2056" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: cvi:CV_2156 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126687.1" /db_xref="GI:319762750" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10104109" /translation="MQLHEVSTDMAALSPEACDYVRQLARRLHEAEHGTGTDLVREAG QFLGLSVATVYRHLKAVAGWSSGRKARSDKGTTSVSAEALVTMGAAQRENISAGGKQR LFTTTARGILEQNGHTFGVSNGHINKLLRDRKLNVAAQRVAEPVQAQRAPHPNHTHQI DPSLCAIYYLKGRQYIIREDEFYKNKLDKIAQLKFKVYRYVCYDRASGMLIPWYCEAA GETQHNLFQFLMFAWGQQEGRLMHGVPKVLLWDKGSANQATAVRSLLDALGVRHIAHR AGNARAKGGVENGNNIVEVQFESRLKFQPVQSVEELNAAAFAWANAYCANLIPGQDTR LRRIGLPAPTARLDLWQLITAEQVRVLPTLEVCQAFMRSKAEDRQVRGDQSVTFRHPS AGRTLPYSLKGFDGINVGDTVQVRGLIYGECAIQVQVERYNGEPLLYRVEPSVNFDAY GQDMAAAVTGDEYRSAPHTEAQHAAKAMDEAAYPGMTGDEIKAARDKRATPFGGKMNA HGYLQDIEHPAYLQRQGSAIDTPAHAAPVGPEMLAPEMAMLRIAPAIGRNLTPEEYAF FMRRYADGVPEDQVAALIAQYQAPAVADEPLRAAGGLRAV" misc_feature complement(2119619..2119924) /locus_tag="Alide_2056" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(2120475..2121539) /locus_tag="Alide_2057" /db_xref="GeneID:10104110" CDS complement(2120475..2121539) /locus_tag="Alide_2057" /inference="similar to AA sequence:KEGG:CV_2155" /note="KEGG: cvi:CV_2155 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126688.1" /db_xref="GI:319762751" /db_xref="GeneID:10104110" /translation="MARPQLSDEQIEERFLKKGRKALPPAEPVGPDFVGATPPDMAAQ EAGAREVLKAAENYREERDLLNQLLGQAQMANAFAKFSKTVFTSKLAFVKENKLYQSL KGSRGENGVQFSGTWEEFCNALGWTPQHANDAIASLNAFGEEALESMSRMGIGYRDLR QYRKLPGDAQLALIEAAKAGDKGEFLDLAEEIIARHSKEKEALQAESQQAKQDADFAG EQLQKERQRADAAEKKLAGKRPVVVPLDERITPFQMEIAERQSLIENGIAAHHEAAIA LEKWWTEEVTQAEGYDPEAPAPLPRSVALVALTLQDSINRLAELVGAAQHAFEERFGD DLAEARQYLMQTPEAADAAA" misc_feature complement(2120478..>2121041) /locus_tag="Alide_2057" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:162739" gene complement(2121566..2121874) /locus_tag="Alide_2058" /db_xref="GeneID:10104111" CDS complement(2121566..2121874) /locus_tag="Alide_2058" /inference="protein motif:PFAM:PF09339" /note="PFAM: regulatory protein IclR; KEGG: mfa:Mfla_2714 hypothetical protein" /codon_start=1 /transl_table=11 /product="regulatory protein iclr" /protein_id="YP_004126689.1" /db_xref="GI:319762752" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="GeneID:10104111" /translation="MSNPQHHQPARRALRLLWVLQGHAFDGLRLKQVAEALQVSPPMA LRDLELLAAEGVAERIPGNEECWRLTPKLIQLARAHDDELRRVRQRVEDIDQRYTRAI " misc_feature complement(<2121620..2121874) /locus_tag="Alide_2058" /note="transcriptional repressor UlaR; Provisional; Region: PRK13509" /db_xref="CDD:184100" gene complement(2121871..2122155) /locus_tag="Alide_2059" /db_xref="GeneID:10104112" CDS complement(2121871..2122155) /locus_tag="Alide_2059" /inference="similar to AA sequence:KEGG:BPSL1153" /note="KEGG: bps:BPSL1153 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126690.1" /db_xref="GI:319762753" /db_xref="GeneID:10104112" /translation="MDHFDTPAPPAHTVKAPTAAERFAEAELALSYDLAKRVPAMERG FTISTSYGDIVIPPGHHANGIAAAVRRALEIQLKATALARRDAELDGGHP" gene complement(2122158..2122628) /locus_tag="Alide_2060" /db_xref="GeneID:10104113" CDS complement(2122158..2122628) /locus_tag="Alide_2060" /inference="similar to AA sequence:KEGG:BB3644" /note="KEGG: bbr:BB3644 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126691.1" /db_xref="GI:319762754" /db_xref="GeneID:10104113" /translation="MTRRNWKHARANSLVHALRLCKEFARDRHNLSVERIADRMGVTD DNLYKWLGTGRMPAILIPTYELACGCHFVSDWLSASAGRLVVPMPTGRGATEADLLAV NSSCAAALDLLTKFYADPASADLAATADALRVHLEHVAFHHHNVARYAAPELEF" gene 2122733..2123170 /locus_tag="Alide_2061" /db_xref="GeneID:10104114" CDS 2122733..2123170 /locus_tag="Alide_2061" /inference="similar to AA sequence:KEGG:BBta_4603" /note="KEGG: bbt:BBta_4603 polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126692.1" /db_xref="GI:319762755" /db_xref="GeneID:10104114" /translation="MDTNPTQPESWSIHEAIAVSFNAFGERFGEDVLWLAFAELARER DATLDELGGAERDINQYLMQVLNKKGSELDLWISSARADGAQALTLLQIGVRWWLARD DLLSRPAQSRVPCQHAEGETDHVSLQLLKQMLYRGAAPYTTCN" gene complement(2123106..2123417) /locus_tag="Alide_2062" /db_xref="GeneID:10104115" CDS complement(2123106..2123417) /locus_tag="Alide_2062" /inference="similar to AA sequence:KEGG:GAU_1846" /note="KEGG: gau:GAU_1846 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126693.1" /db_xref="GI:319762756" /db_xref="GeneID:10104115" /translation="MSDMSSEHLTGRALVDRVKQLQASYRAECSAALALAPGREGDVF TLMLVDDSLKPRTAAMDALRVELGLPDPIAPSSLELGRLSCRLYKAPPHGTASASAVG G" gene complement(2123414..2123713) /locus_tag="Alide_2063" /db_xref="GeneID:10104116" CDS complement(2123414..2123713) /locus_tag="Alide_2063" /inference="similar to AA sequence:KEGG:BB3643" /note="KEGG: bbr:BB3643 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126694.1" /db_xref="GI:319762757" /db_xref="GeneID:10104116" /translation="MHPHHIVTDIAPLGYAIGLETKTRQQVRQEFASHGWSVSAWAKQ KGYSATLVLDILNDDERNPRRKCLRGESHNIAVELGLKAGQVSRSPAPRLQLAAA" gene complement(2123745..2123942) /locus_tag="Alide_2064" /db_xref="GeneID:10104117" CDS complement(2123745..2123942) /locus_tag="Alide_2064" /inference="similar to AA sequence:KEGG:BCAL1594" /note="KEGG: bcj:BCAL1594 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126695.1" /db_xref="GI:319762758" /db_xref="GeneID:10104117" /translation="MKTAAQPSANQIKHRLRQQGQTLKTFAAANGFKYRTVSDVVRGM RHGNFGEGREVRIALGLPVND" gene 2124038..2124544 /locus_tag="Alide_2065" /db_xref="GeneID:10104118" CDS 2124038..2124544 /locus_tag="Alide_2065" /inference="protein motif:PFAM:PF07022" /note="PFAM: CI repressor; KEGG: hsm:HSM_0646 hypothetical protein" /codon_start=1 /transl_table=11 /product="ci repressor" /protein_id="YP_004126696.1" /db_xref="GI:319762759" /db_xref="GO:0003677" /db_xref="GO:0016564" /db_xref="InterPro:IPR010744" /db_xref="GeneID:10104118" /translation="MNFFSDSLARLKHYLRVSKDQEVAAALGLSKTAFSERKKRNSFP EKELRALAEQRPELGIDVGYVLTGQSTEDAVNKAIASALHPGREGLADVGSLGPTPAV DELSLFDRAMHAPRKRRQLIPGRLCCEADEEEQLLMAYRDADDQGKSALLLTAHALAA LAQEGKTG" misc_feature 2124053..2124244 /locus_tag="Alide_2065" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene 2124572..2125153 /locus_tag="Alide_2066" /db_xref="GeneID:10104119" CDS 2124572..2125153 /locus_tag="Alide_2066" /inference="similar to AA sequence:KEGG:100122395" /note="KEGG: nvi:100122395 similar to n6-adenosine-methyltransferase ime4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126697.1" /db_xref="GI:319762760" /db_xref="GeneID:10104119" /translation="MGWLVLAVLSGLAVWVGYKLAKPDLAAPEGGDAAPGPAQYHQSR PNRSALQITVDGVEHDYTHHPLFQAIAPMMARGEWGDARRYLQKIAYGIKEATEDEQR VFKHIMMAFASVDPLYAQCLRGIAPILAEHPEGIRQTTLYPHMAAAPDAETARYVLYF ADELGAIRRLKKGNSYLVFSTGSGPDLDFKVHA" gene 2125201..2125716 /locus_tag="Alide_2067" /db_xref="GeneID:10104120" CDS 2125201..2125716 /locus_tag="Alide_2067" /inference="similar to AA sequence:KEGG:Smlt0146" /note="KEGG: sml:Smlt0146 TPR repeat protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126698.1" /db_xref="GI:319762761" /db_xref="GeneID:10104120" /translation="MTDKSPPDDMLAYILRELVEVKVEMVSLRAVVDAQGQMINALFV ALPVSQRPAALALLHAQQMSLESEGEESAAAMLGAFVKGLQGLLGEGLERSMGEVAAA YGLTNALVRSVPAEQAKAMRTWLSIATEGEIAQDAAQLPPEQLSELLRLQASSKPARR GGAKKKKSDGG" gene 2125913..2126272 /locus_tag="Alide_2068" /db_xref="GeneID:10104121" CDS 2125913..2126272 /locus_tag="Alide_2068" /inference="similar to AA sequence:KEGG:RCFBP_11706" /note="KEGG: rsc:RCFBP_11706 phage-related membrane protein" /codon_start=1 /transl_table=11 /product="phage-related membrane protein" /protein_id="YP_004126699.1" /db_xref="GI:319762762" /db_xref="GeneID:10104121" /translation="MRDIIPAWLRAPRTTTWLLLAALLLAVIAIVAPPQLPVVLYKVS LIALAAVLGYWLDRALFPYARPDGYLARDWRYGTEEPEGDVDYPVVLGYIRVFTAAMI RRALVVGCVVLGMAAGL" sig_peptide 2125913..2126008 /locus_tag="Alide_2068" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.958) with cleavage site probability 0.870 at residue 32" gene 2126275..2126922 /locus_tag="Alide_2069" /db_xref="GeneID:10104122" CDS 2126275..2126922 /locus_tag="Alide_2069" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase catalytic; KEGG: dvm:DvMF_0723 lytic transglycosylase catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic" /protein_id="YP_004126700.1" /db_xref="GI:319762763" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10104122" /translation="MFPQFAALILRRVAIAFLCCTLGLWAFVLIAAWSVAYAQVPQQA QQHRALLVRTAHAAWGLDAPVAVFAAQVHQESGWRPDAVSHVGAQGLAQFMPATTRWI AGLHPELAAQQPFSPAWALRALVTYDRWLFDRAPARYTPRDRMHVALRAYNGGLGHWQ QEAAATGAARPTAAEVDAACGKARRAAVHCRENLHYPRRILIELQPRYAAWGPGL" sig_peptide 2126275..2126391 /locus_tag="Alide_2069" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.735 at residue 39" misc_feature 2126467..>2126748 /locus_tag="Alide_2069" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(2126497..2126499,2126557..2126559,2126653..2126655, 2126728..2126730) /locus_tag="Alide_2069" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 2126497..2126499 /locus_tag="Alide_2069" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 2126919..2127131 /locus_tag="Alide_2070" /db_xref="GeneID:10104123" CDS 2126919..2127131 /locus_tag="Alide_2070" /inference="similar to AA sequence:KEGG:BCB4264_A3495" /note="KEGG: bcb:BCB4264_A3495 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126701.1" /db_xref="GI:319762764" /db_xref="GeneID:10104123" /translation="MNWPAIFTPLLAPNFIVTVLVIACATALLALRLIDQALWWTAVA GAGAIYTMRGVESDRVQIKNASGQQP" gene 2127178..2127711 /locus_tag="Alide_2071" /db_xref="GeneID:10104124" CDS 2127178..2127711 /locus_tag="Alide_2071" /inference="similar to AA sequence:KEGG:CtCNB1_3551" /note="KEGG: ctt:CtCNB1_3551 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126702.1" /db_xref="GI:319762765" /db_xref="GeneID:10104124" /translation="MILDKIKAYGLQALCIVLLALLCAQTWRLHAEQLAHGRLQTQVS QADTGRATAALRDERRNAGLSLAHAQQTQENSDAFTTSQPIRDALARVDRAVAERLHL GAERRAATYRAMAETNAAACRDLADRHAALDAHVVRGVEVVAGLRGDLVRRDAEVVLL RRQIDTDRALLDDASHE" sig_peptide 2127178..2127273 /locus_tag="Alide_2071" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.844) with cleavage site probability 0.829 at residue 32" gene 2127704..2127961 /locus_tag="Alide_2072" /db_xref="GeneID:10104125" CDS 2127704..2127961 /locus_tag="Alide_2072" /inference="protein motif:TFAM:TIGR02419" /note="TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: pol:Bpro_3778 TraR/DksA family transcriptional regulator" /codon_start=1 /transl_table=11 /product="phage/conjugal plasmid c-4 type zinc finger protein, trar family" /protein_id="YP_004126703.1" /db_xref="GI:319762766" /db_xref="InterPro:IPR000962" /db_xref="InterPro:IPR012783" /db_xref="GeneID:10104125" /translation="MSDDIDRAQAREAELLADALRDHHRRAGLAGKTAADSAEFCGES SDSGLGCGEPIPRARREASPGCQFCVACQSRIEKTNKGAKA" misc_feature <2127809..2127946 /locus_tag="Alide_2072" /note="Prokaryotic dksA/traR C4-type zinc finger; Region: zf-dskA_traR; cl00755" /db_xref="CDD:193930" gene 2127961..2128263 /locus_tag="Alide_2073" /db_xref="GeneID:10104126" CDS 2127961..2128263 /locus_tag="Alide_2073" /inference="similar to AA sequence:KEGG:BB3635" /note="KEGG: bbr:BB3635 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126704.1" /db_xref="GI:319762767" /db_xref="GeneID:10104126" /translation="MSFTDMTFSFEAVRWLLLSAIGIYAWFIGRQSASAAELLELRTR LTTLEAQMAQVPSQAQLHELVATVASLRGSIETVAARIEPVARSVDRVETFLLNKK" sig_peptide 2127961..2128068 /locus_tag="Alide_2073" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.804) with cleavage site probability 0.800 at residue 36" gene 2128260..2128553 /locus_tag="Alide_2074" /db_xref="GeneID:10104127" CDS 2128260..2128553 /locus_tag="Alide_2074" /inference="similar to AA sequence:KEGG:BB3634" /note="KEGG: bbr:BB3634 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126705.1" /db_xref="GI:319762768" /db_xref="GeneID:10104127" /translation="MSNFSTFLAEDRRLVILRVLAELPAYRTNSFLLHTLLAKWGHEP STDQVKGDLAWLREQQLVTVDDVEGVYIATLTTRGADVAAGRAMVPGVKRPGA" gene 2128557..2129099 /locus_tag="Alide_2075" /db_xref="GeneID:10104128" CDS 2128557..2129099 /locus_tag="Alide_2075" /inference="similar to AA sequence:KEGG:BB3633" /note="KEGG: bbr:BB3633 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126706.1" /db_xref="GI:319762769" /db_xref="GeneID:10104128" /translation="MGRKSSVKRLDPVARQYLERLIREDRHTLDELLTAMRAKFPTEE VSRSAIHRHRVGYEELVKGMREQQAIASLVVSELGENPDDKAGALLVQTITTLTNQVA LTAAGGGDVDVETVRKLARASKDVLAARRVDRQERIAIRQEAREELLAEQQAQAQELT RAGVPAQEILAQLMKAGYGL" misc_feature 2128557..>2128943 /locus_tag="Alide_2075" /note="Protein of unknown function (DUF3486); Region: DUF3486; pfam11985" /db_xref="CDD:152420" gene 2129096..2129239 /locus_tag="Alide_2076" /db_xref="GeneID:10104129" CDS 2129096..2129239 /locus_tag="Alide_2076" /inference="similar to AA sequence:KEGG:PSPA7_2455" /note="KEGG: pap:PSPA7_2455 formate/nitrate transporter" /codon_start=1 /transl_table=11 /product="formate/nitrate transporter" /protein_id="YP_004126707.1" /db_xref="GI:319762770" /db_xref="GeneID:10104129" /translation="MKTLDAAFALLRLAAIAIGYVVILMWLAGELGWADFRLIFILPE MSA" gene 2129236..2130600 /locus_tag="Alide_2077" /db_xref="GeneID:10104130" CDS 2129236..2130600 /locus_tag="Alide_2077" /inference="similar to AA sequence:KEGG:MCA2933" /note="KEGG: mca:MCA2933 prophage MuMc02, terminase, ATPase subunit, putative" /codon_start=1 /transl_table=11 /product="prophage mumc02, terminase, atpase subunit, putative" /protein_id="YP_004126708.1" /db_xref="GI:319762771" /db_xref="GeneID:10104130" /translation="MSAVQPALPLYPYQRRWVLDDARFKIAMFARQCGKTFTSTLELA LDCARAEALGQRRRWVILSRGERQAREAMNEGVKLHLAALSAGFKAYDYDWEPGIKAL EVELPGGSKITALPANPDTARGFSANVLLDEFAFHQDSRAIWKALFPVISKPGLKLRV ISTPNGKGNKFYDLMTGADDGWSRHTTDIYQAVADGLPRNIEELRKGAGDDDLWAQEF ELKWLDEASAWLPFELITACEHEAAGKPEHYQGGPCFVGVDIASRNDLFVIWVFELVG DVLWVREIIERRRITFAEQDMLLDGVFRRYRVIRACMDQTGMGEKPVEDAQRRHGSSR VQGVLFTSSAKLELATRGKEGFEDRKLRIPEGRNDLRADLHKLKKVTGATGVPRFVAD SDSNGHADRTWACFLAQHAAAGGQTPIEFTAAPSLPRGFDNLGAADDEAEDHLALIEP RSTW" misc_feature 2129236..2130510 /locus_tag="Alide_2077" /note="Mu-like prophage FluMu protein gp28 [General function prediction only]; Region: COG4373" /db_xref="CDD:34082" misc_feature 2129311..2130471 /locus_tag="Alide_2077" /note="Terminase-like family; Region: Terminase_6; pfam03237" /db_xref="CDD:146059" gene 2130607..2132196 /locus_tag="Alide_2078" /db_xref="GeneID:10104131" CDS 2130607..2132196 /locus_tag="Alide_2078" /inference="protein motif:PFAM:PF06074" /note="PFAM: protein of unknown function DUF935; KEGG: slt:Slit_0224 protein of unknown function DUF935" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126709.1" /db_xref="GI:319762772" /db_xref="InterPro:IPR009279" /db_xref="GeneID:10104131" /translation="MATSRILGPDGQPIQMPDLQEPQTSRLLHLQRELQTHPTRGLTP SRLAKILDAAETGDLIAQFELFEDMEEKDGHIAAEMGKRRRACVLDWDVVPPEGADAA EKKTAAQLGELLMEIPDFEDMVFDLTDAIGKGYACLEIEWHQVEGYWVPKTITHRPQS WFTLHRGYRQELRLRSNAVVDGVMGDPLRPFGWITHIHKAKSGYLERAALFRQLVWTY LFKNYSVGDLAEFLELIGVLRLGKYPPNASDKEKAALLRALAAIGHNASGIIPEGMLI EFHNVEPGDPKAFQAMIDWCERNQSKVILGGTLTSGADGKASTNALGNVHNEVRKDLR DGDIRQANTTLTRDLVFAVASLNGLAPGGLRRLPQFRLKTQEREDLTAFSQGLPPLVN MGVRPPVSWVHERLGIPTAQGNEPVLMPVQQATPVALPSALAATTAQLPAPAAPAIAP PHVQMQPRLADNMASAVGGWFDLVRDLVMRAQSLAEIRDGLDALLPGMTLDQYAAAMA VALRAAEMAGRYEVMQEAAGG" misc_feature 2130616..2132172 /locus_tag="Alide_2078" /note="Protein of unknown function (DUF935); Region: DUF935; pfam06074" /db_xref="CDD:147953" misc_feature 2130631..>2131860 /locus_tag="Alide_2078" /note="Mu-like prophage protein gp29 [Function unknown]; Region: COG4383" /db_xref="CDD:34090" gene 2132306..2133544 /locus_tag="Alide_2079" /db_xref="GeneID:10104132" CDS 2132306..2133544 /locus_tag="Alide_2079" /inference="protein motif:PFAM:PF04233" /note="PFAM: head morphogenesis protein SPP1 gp7; KEGG: hdu:HD1557 bacteriophage Mu GP30-like protein" /codon_start=1 /transl_table=11 /product="head morphogenesis protein spp1 gp7" /protein_id="YP_004126710.1" /db_xref="GI:319762773" /db_xref="InterPro:IPR006528" /db_xref="GeneID:10104132" /translation="MPFAAYGSLPFAEQAEFFRRKLNLPTDGWTDIWTWMHDYAFVVA GANRDAIVSDFRAAVEKAIAGGATLEDFRRDFDRIVATHGWDYNGGRNWRSRVIYDTN LSTSYAAGRWQQLQEAPYWQYEHQDWVQHPRPEHESWDGLVLERDDPWWQTHFPPNGW GCQCKVRGLWSRDLQKLGKSGPDQAPAVKLLEREIGQRSINGPRTVRVPEGIDPGFEY APGRARLRSAIPPERPSPLIPGSAGGPGMPNRRPSAPLPPPRPVPATDLLPLGLEPQQ YVDAYLGALGVRPGASAVIKDVIGERLVVGQELFTDAKGALKVTKRGREQYMLLLARA LREPDEVWARVEWLHAQGRAVVRRRYVARFAVEGEPAPALAVFELGADGWSGVTTFQG VTQSEDEWRVGVLLYQRIVP" misc_feature 2132465..2132806 /locus_tag="Alide_2079" /note="Phage Mu protein F like protein; Region: Phage_Mu_F; cl10072" /db_xref="CDD:142383" gene 2133664..2134227 /locus_tag="Alide_2080" /db_xref="GeneID:10104133" CDS 2133664..2134227 /locus_tag="Alide_2080" /inference="protein motif:TFAM:TIGR01635" /note="TIGRFAM: phage virion morphogenesis protein; KEGG: hdu:HD1558 bacteriophage Mu G-like protein" /codon_start=1 /transl_table=11 /product="phage virion morphogenesis protein" /protein_id="YP_004126711.1" /db_xref="GI:319762774" /db_xref="InterPro:IPR006522" /db_xref="GeneID:10104133" /translation="MAGTRLTIDKAELERLNAFMAEQAARDTSGLMPRLGEYLLRSTQ ARFKTQTAPDGTPWAPLQQRYARRKKYNKDKILTLRGYLRSYIHYQIPNAQTVEVGSN QKYAAAHQLGNSFVINAHSRVQRYRSVAGRVLFAGAEHKRGVTEKRVTTGAYMVNIPA RPFLGISAADDKEIRKIITDWVIGRDK" misc_feature 2133688..2134209 /locus_tag="Alide_2080" /note="Phage virion morphogenesis family; Region: Phage_tail_S; cl02089" /db_xref="CDD:154737" gene 2134276..2135439 /locus_tag="Alide_2081" /db_xref="GeneID:10104134" CDS 2134276..2135439 /locus_tag="Alide_2081" /inference="protein motif:PFAM:PF10123" /note="PFAM: Mu-like prophage I protein; KEGG: pag:PLES_15791 protease (I) and scaffold (Z) proteins" /codon_start=1 /transl_table=11 /product="mu-like prophage i protein" /protein_id="YP_004126712.1" /db_xref="GI:319762775" /db_xref="InterPro:IPR012106" /db_xref="InterPro:IPR019295" /db_xref="GeneID:10104134" /translation="MPSPNTPRSRSAVAIAACTFAVQAAGAADGLMRRVQYFPAGPFR SGDTRPDDVPAWRIDAASAAQVIERFNARMARKPIVVDYEHQTLHKEKNGQPAPAAGW PKSLEWVEGEGLFGMVEMTARAAAAIDGKEYLYFSPVFAYSKVDGTVLEILMGALTND PGIERMQPLSLMAAATAAFLTSLDYPQEHPVNPLLKALLAALGLPETTSEEAATAALT AIGPLQALQARAGVATAACTALQLPTDATPEVVTAACTSLRTAQADPARFVPVEAVTA LQGQIAALTARQQAADVDALVKPALADGRLLPAMESWARELGKSNVAALTAYLAAAQP IAALAGTQTQGLPPSGPAKGDAQLSADELAVCTAMGLTPEQYKAGAVATSAAA" misc_feature 2134276..2135403 /locus_tag="Alide_2081" /note="Mu-like prophage I protein [General function prediction only]; Region: COG4388" /db_xref="CDD:34095" sig_peptide 2134276..2134359 /locus_tag="Alide_2081" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.587 at residue 28" misc_feature 2134378..2135409 /locus_tag="Alide_2081" /note="Mu-like prophage I protein; Region: Mu-like_Pro; pfam10123" /db_xref="CDD:150761" gene 2135463..2135873 /locus_tag="Alide_2082" /db_xref="GeneID:10104135" CDS 2135463..2135873 /locus_tag="Alide_2082" /inference="similar to AA sequence:KEGG:amb1767" /note="KEGG: mag:amb1767 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126713.1" /db_xref="GI:319762776" /db_xref="GeneID:10104135" /translation="MAALTQDRNTLRRDGVLIEPPVAGGARIFAGALVAINAAGLAVP GATSTTLAGAGAALAPADNTLGAAGALRVRVDKRPARFANSAAADAITLADIGKDCFI VDDQTVAKTSGANTRSRAGKVFDVDADGVWVDFR" gene 2135901..2136794 /locus_tag="Alide_2083" /db_xref="GeneID:10104136" CDS 2135901..2136794 /locus_tag="Alide_2083" /inference="similar to AA sequence:KEGG:amb1768" /note="KEGG: mag:amb1768 Mu-like prophage major head subunit gpT" /codon_start=1 /transl_table=11 /product="mu-like prophage major head subunit gpt" /protein_id="YP_004126714.1" /db_xref="GI:319762777" /db_xref="GeneID:10104136" /translation="MQINHSNLAILNQAFSGAFRGALAQATPMWSQAATLVPSTTSET KYAWLGQITRFREWIGERQIQNLVLHDYAIKNKTFENTVAVSREEIEDDQYGIYTPVI QQLGQDAALHPDELVFSLLNAGFATPCYDGQYFFDTDHPVGAPGGQASVSNFQGGSGT AWFLLDTSKVIKPVLYQKRRDYAFTAKTSLTDENVFNRNEFVWGADGRGNAGLGLWQL AYASKEALTVQSYADARAAHQSLRGDNGKPLVIQSKELWVPPNLEQAALEVVQAERLA GGATNVMRNLSKVVVCPWLAA" misc_feature 2135922..2136785 /locus_tag="Alide_2083" /note="Mu-like prophage major head subunit gpT; Region: Mu-like_gpT; cl01826" /db_xref="CDD:154610" gene 2136819..2137121 /locus_tag="Alide_2084" /db_xref="GeneID:10104137" CDS 2136819..2137121 /locus_tag="Alide_2084" /inference="similar to AA sequence:KEGG:amb1769" /note="KEGG: mag:amb1769 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126715.1" /db_xref="GI:319762778" /db_xref="GeneID:10104137" /translation="MATAKKTPPKRNASAQATAAATLGAPAEGMRQVLQVITKRDGFR RAGRAWSGTTTVPLDELTEEQYLQLTTEPMLVTLLLEVPDDQVGELSAADEGGTST" gene 2137202..2137738 /locus_tag="Alide_2085" /db_xref="GeneID:10104138" CDS 2137202..2137738 /locus_tag="Alide_2085" /inference="protein motif:PFAM:PF07030" /note="PFAM: protein of unknown function DUF1320; KEGG: hdu:HD1562 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126716.1" /db_xref="GI:319762779" /db_xref="InterPro:IPR009752" /db_xref="GeneID:10104138" /translation="MSYITTAELAERPGAREIAQTASLPHQMVRDDALMDATLRGLDR SAWTPEQIAAADAALARVQDAVAEAGALIDGHLVQRGYVLPIDLPAGSSGRSMVTVWA RSITRYLLNKDRMSDESKDPVARDYRDALKLLGQLAAGKFSLGVDDPAATANASSTDV RFQGAETVFGRDQMRAFR" misc_feature 2137208..2137672 /locus_tag="Alide_2085" /note="Protein of unknown function (DUF1320); Region: DUF1320; cl01818" /db_xref="CDD:194195" gene 2137745..2138179 /locus_tag="Alide_2086" /db_xref="GeneID:10104139" CDS 2137745..2138179 /locus_tag="Alide_2086" /inference="similar to AA sequence:KEGG:rrnAC2056" /note="KEGG: hma:rrnAC2056 D-3-phosphoglycerate dehydrogenase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126717.1" /db_xref="GI:319762780" /db_xref="GeneID:10104139" /translation="MDLQPILQRLRDELADLQLREIEEAPGLDAAMRASRATPAIYVL PLSERGQGLDHTGDTDQIEHRLFGVLQAVDVMSPTGTPGVVDLATLRRSVKQALIGFV ADDSMGEPVLFVGGELVQFEGNGRLWWSDEFGFSGYYDRSNP" gene 2138176..2138400 /locus_tag="Alide_2087" /db_xref="GeneID:10104140" CDS 2138176..2138400 /locus_tag="Alide_2087" /inference="similar to AA sequence:KEGG:Franean1_4038" /note="KEGG: fre:Franean1_4038 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004126718.1" /db_xref="GI:319762781" /db_xref="GeneID:10104140" /translation="MSTRNAKNTTPQAQEDTSAQEATAAVADLAAAVVQPQAPAAPAD VYSGQGGLYTMKNGKRVRVAATAATTEEQQ" gene 2138397..2139359 /locus_tag="Alide_2088" /db_xref="GeneID:10104141" CDS 2138397..2139359 /locus_tag="Alide_2088" /inference="similar to AA sequence:KEGG:Daci_1328" /note="KEGG: dac:Daci_1328 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126719.1" /db_xref="GI:319762782" /db_xref="GeneID:10104141" /translation="MSAPKFIKKMAVLVAIEAIVGTIVVPVAADAIEVSDVTLTPIEG DEVDQGVIRPYFGASETTLVTLYRKIAFSVGFAGVAAAGDLPGWSTLMRACAASVTNT AAPDPDAGTVFAPVTDGIESVTIYAVVDKQLYKMAGARANVKATVDAKQIPKWQYEFT GSFLPVEDVANMPAVSYAKFLRPLGVNALNTKLSLDGFTAACSSFAFDFGNSVVKQDL MNVDTTEITGRVSTGSVTFRNTSVATKNWIEMARESAKVPLLLIHGKAVSNPANTSNT VQISASLAQIGKPTFSDQDGIQMITVPLRFIPSDAGNDEWAIAA" gene 2139404..2139895 /locus_tag="Alide_2089" /db_xref="GeneID:10104142" CDS 2139404..2139895 /locus_tag="Alide_2089" /inference="similar to AA sequence:KEGG:SCO4763" /note="KEGG: sco:SCO4763 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126720.1" /db_xref="GI:319762783" /db_xref="GeneID:10104142" /translation="MTVVLASVAFWAPVTYRLIGDDGKPEIVQGRARYQRLKTSERRA LDRRLRANHLTPDVRAGIRAQLDAPDSKFTARERREIEADLAAEPINDEQFLQALLVD WDFKDKTGAVISYTPAMCAQLCEEWDGFEAALARGYMDAQKSLNDPKEQEKNSEAPSG TGS" gene 2139958..2140269 /locus_tag="Alide_2090" /db_xref="GeneID:10104143" CDS 2139958..2140269 /locus_tag="Alide_2090" /inference="protein motif:PFAM:PF08809" /note="PFAM: protein of unknown function DUF1799 phage-related; KEGG: mfa:Mfla_2690 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126721.1" /db_xref="GI:319762784" /db_xref="InterPro:IPR014915" /db_xref="GeneID:10104143" /translation="MLGVDPDRARDAAQEADDGAADPEPDEFELPPELWPAWECFLAS WNQWRVIVGFAAMYYDGIDRTALMSTMDMLGVQKSKRRDVFLQVQILEAEAKPLRNQR D" misc_feature <2140060..2140242 /locus_tag="Alide_2090" /note="Phage related hypothetical protein (DUF1799); Region: DUF1799; pfam08809" /db_xref="CDD:149766" gene 2140292..2145208 /locus_tag="Alide_2091" /db_xref="GeneID:10104144" CDS 2140292..2145208 /locus_tag="Alide_2091" /inference="protein motif:PFAM:PF06791" /note="PFAM: Prophage tail length tape measure; KEGG: pop:POPTR_595161 hypothetical protein" /codon_start=1 /transl_table=11 /product="prophage tail length tape measure" /protein_id="YP_004126722.1" /db_xref="GI:319762785" /db_xref="InterPro:IPR009628" /db_xref="GeneID:10104144" /translation="MSAQFVVGTKVTADASQYTSELTRAGQTTATYTQQVQAADTAAQ AMGSAIAAGNKAHAAGAISAAQHAAAMRMLPAQITDVVTSLSSGMPVWMVAIQQGGQI KDSFGGAGNAMRAMLGAITPTIAGLGLLAGAAGLATAAYYQGSREADGYRQAIVMTGN AADTTVNQLTDMARAMSAISGTQGAAAESLTALAGTGAIASENLQQFATVAMDLERRV GQPIKTTAQHLEELGKAPVQASLKLNEQYHYLTEAVYSQIKALQDQGKQEEAASLAQR TYANAMAERTAELRSNLGTLERLWEGLGNTARRAWDAMLNVGRAATLSDVRAKIEETN SQLNDLLMGNGFDSTGGGAATGAGGRGRAAQIERLKKQLSDLYGQAAPLEAEEAQAQI RAEKQATDAIELAARQRIDTLKKNVRPQAEIRKQEIDQLDRDRETLKLSTEEYNALLA GINEKYKDKKTAGAGGIKVSDSELANLQGQLEAARLYGQQLATLGAGASELNAGERES LKIGEELARVTDAKTAARLREKQAIAEALGVQLRSNDGLEKSLKAHQSLIDTTFKDAD AITQRATAQEAANSVFGKGRTAIEQMTLAELEHQMAEAQASDSFDPKYIAGLELKIAA QKRYVAALQGADYKAAEQHVNELLRGARELAKAYEDEQQLSGLTALEREKIVAQRQVE LKYAKELAAIDKSAYTDAEKQALREQTLEAQRIESAAAVAKAQQQYMARASDEINRSL TDALMRGFESGKSAAENLADTTVNLFKSMVLRPTISAIMTPVSLVINGIVQQGLNAVG LGSGGGGLLNMASNASSLYSLATGNSMVGNAVSTVGGWLGLGASTTGLGLTAGAGAGA IGAGIGSSLGLGAAGSAAGTGLGLTAGGGLGLTAGSAGASAIGAGIGTGAAAGGAGIS SALAAIPGWGWAAAAVLAIAKFAGAFEGPTPHSGGAGSYSAAGGASTGRDVLGQGLTF GVGERYYSGEAEKAAVGISQGIVQMLDSTAEAFGNKAGYYVATAFADDSSKDGAWGSL IVRRDGEKVLDWADTQTSKWAPKVFADGEEGQKQYAAAIANSARDALKTALGDSAWAK DMLDALGDGVTLEGLGSAVAQITAAKAALDSFGQYMPTFSSLAGGAVSALVQAAGGMD PLKASMATFVDQFYSESEKLAVNTGNVRQAIADLGFEMPGTREEFKVLVQAQLALGEA GAETAAGLLGLSGAFASVTRDSATLADSLSITADSISSLLSNAVNGAGSEAEAQQAAS AAFEQQLIDGMLNAMSASVGQLVMDSLVAPLMSNLVAGATASATTLALGGSVAATDLA TGGAVAAAANASGGSAAAGAMAAGGSAAGQAMAAGGSVAGATVANVVAQAQASINAMV TILKDPGIQAAFGEISSAIGSVSGSLYNASGSVGGFASSIGKVSGAINGGGGGGSGGG ADKGINDLADSLKNLGNTAAEEVKRLRGLMVEDSPQSQEVLLARFATSTAAARAGDQE ALKLLPELSRAIESAAAASAISSVEVARMRGWLAGSLSQTLGTLGLDVPQFAVGTNYV PRDMLALIHEGEAIVPKAFNPMAFGAGAGADSNELRGLRVSFDRFADVSLESALNGQR LLLRVVRALEHWEVNGMPAARKENWSPA" misc_feature 2140502..2141071 /locus_tag="Alide_2091" /note="Prophage tail length tape measure protein; Region: TMP_2; pfam06791" /db_xref="CDD:148412" misc_feature <2141507..>2142568 /locus_tag="Alide_2091" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" gene 2145205..2146119 /locus_tag="Alide_2092" /db_xref="GeneID:10104145" CDS 2145205..2146119 /locus_tag="Alide_2092" /inference="similar to AA sequence:KEGG:Aave_1783" /note="KEGG: aav:Aave_1783 carbohydrate-binding family V/XII protein" /codon_start=1 /transl_table=11 /product="carbohydrate-binding family v/xii protein" /protein_id="YP_004126723.1" /db_xref="GI:319762786" /db_xref="GeneID:10104145" /translation="MSQQGLLIMKPFAVTDATLVSSTVPEDDAPPWSSTATYANGAMV MLASTHSVYENSLDGNINKSPDAHPDIWTRVRATNRWRCLDRKNSARTAQADGMAFVF APGTAIGMLAFVGLVNAASVRGRMIDPVYGTVWDQTQYPGPAPVQSDPWEWAFGEWTN GKTLALFTGLPSFPNAQLHVELIGGPDLALGHLIYGQPRVWGQGVAWGVRLGRAVYSK IEPNKYGELELLKRPTAKKPSFEVLLRRHELDPLMDFLDTIDAQVCLFVIADLWECMT LVGVVQNADALPRGLSDIVLDMELLEVV" gene 2146217..2146789 /locus_tag="Alide_2093" /db_xref="GeneID:10104146" CDS 2146217..2146789 /locus_tag="Alide_2093" /inference="similar to AA sequence:KEGG:Daci_1333" /note="KEGG: dac:Daci_1333 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126724.1" /db_xref="GI:319762787" /db_xref="GeneID:10104146" /translation="MENFITQLNGAITWVASQLATIAGHAVTTTSASADAVAAAGAAA ASAGATKWQPGTAYADGAVVWSPVTYQTYRRMGAGSGTVDPSADTAAWAPQDREAVGA LISISANTTALRFCTYELGNAALALQLPVVAARGDWVGVIPPGTVVDGQTVARNGHLL LGAAEDMDIDVTAPFRLVYVSPARGWVIAT" gene 2146806..2147261 /locus_tag="Alide_2094" /db_xref="GeneID:10104147" CDS 2146806..2147261 /locus_tag="Alide_2094" /inference="similar to AA sequence:KEGG:WS1759" /note="KEGG: wsu:WS1759 flagellar hook protein FlgE" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126725.1" /db_xref="GI:319762788" /db_xref="GeneID:10104147" /translation="MSRASDVLGANAPVWVSGKTYKPGDVVKAPADRYQLYVRTGAAG GGATDPSADSANYTPFGARAIKSTQRGVIAFGPGVKTVTATITAVNTAKTQLRILGGT SSSGGTGISSATMRVVLTDATTLTGDREAGIDSNGNTSGSVAWELTEYF" gene 2147261..2147740 /locus_tag="Alide_2095" /db_xref="GeneID:10104148" CDS 2147261..2147740 /locus_tag="Alide_2095" /inference="similar to AA sequence:KEGG:Daci_2627" /note="KEGG: dac:Daci_2627 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126726.1" /db_xref="GI:319762789" /db_xref="GeneID:10104148" /translation="MPFYIQLNEDGLAISVTETSADLEPSPQRVQIDGLRSDLLGQIY DPQASAAAGHAVFAPPPLPPAQRRVSVLALRRRFAPPERVAIEWAAVDRADQPTAQRQ QAAALRASLADQAAASFIDLDDADTIAGVQALETMGLLAPGRATQILAAQVAPEERP" gene 2147737..2148072 /locus_tag="Alide_2096" /db_xref="GeneID:10104149" CDS 2147737..2148072 /locus_tag="Alide_2096" /inference="similar to AA sequence:KEGG:sce7319" /note="KEGG: scl:sce7319 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126727.1" /db_xref="GI:319762790" /db_xref="GeneID:10104149" /translation="MTRGASGTYLFTAGATFSLLARIPDAFAASHFAGYTPSAQLRTP SGKLIATLAVAWTDGAASALRLTAGDTQDWPVGPAAFDICLESPAGTRIYTQPATIQI QRGITRAAP" sig_peptide 2147737..2147802 /locus_tag="Alide_2096" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.833) with cleavage site probability 0.725 at residue 22" gene 2148069..2148320 /locus_tag="Alide_2097" /db_xref="GeneID:10104150" CDS 2148069..2148320 /locus_tag="Alide_2097" /inference="similar to AA sequence:KEGG:Rru_A2371" /note="KEGG: rru:Rru_A2371 hydroxyacylglutathione hydrolase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126728.1" /db_xref="GI:319762791" /db_xref="GeneID:10104150" /translation="MTSNCMPVNADEPVIHLRLTTDPEVFADFGTLIPGPGGGADGAL LIANKLAELSSDPQTQLDAQAHLGLGVADPLAYYILAKS" gene 2148334..2148867 /locus_tag="Alide_2098" /db_xref="GeneID:10104151" CDS 2148334..2148867 /locus_tag="Alide_2098" /inference="similar to AA sequence:KEGG:RPSI07_0238" /note="KEGG: rsl:RPSI07_0238 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126729.1" /db_xref="GI:319762792" /db_xref="GeneID:10104151" /translation="MSLESRIIALAQAIGTDIKAIKVAQGTLSALNTTNKSSLVAAIN ELMTLISGSGATIDDNAGNGNTAATWSADKIYDSIEAAKMAVKSDLINGAGAALDTLN ELAAALGNDPSFAATIAGELANRVRYDAAQALTSPQQAQARSNIGAAAASDATALATG LGSYDRDYAADYAAAKA" gene 2148871..2149548 /locus_tag="Alide_2099" /db_xref="GeneID:10104152" CDS 2148871..2149548 /locus_tag="Alide_2099" /inference="similar to AA sequence:KEGG:SPO2726" /note="KEGG: sil:SPO2726 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126730.1" /db_xref="GI:319762793" /db_xref="GeneID:10104152" /translation="MTLETRITALAQAIGADIKALQAGGGGGATAWADITGKPQLLGP DGWFYMVAPGKWSALDSVGGPDFDTLSGTLDVPNPSSAGLRLSLPRWNVVSGTAANTA LEQAASPSRAWRGNAVGRGGFVYRTRFSVTSTTAKQRGFFGLQDYAANYGGAQNPYLL SNSLGIAFDSNVDANYQITHNASGAATKVDAGSSFPLGDPSAVLDLTLSCAPNASTVA WKLLTGR" gene complement(2149550..2149675) /locus_tag="Alide_2100" /pseudo /db_xref="GeneID:10104153" gene complement(2149688..2150776) /locus_tag="Alide_2101" /db_xref="GeneID:10104154" CDS complement(2149688..2150776) /locus_tag="Alide_2101" /inference="protein motif:PFAM:PF01609" /note="KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase is4 family protein" /protein_id="YP_004126731.1" /db_xref="GI:319762794" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002559" /db_xref="GeneID:10104154" /translation="MRGSQDFQGAMFSYISLEERVPQAHPLRKLRAVVDALLATMNRE FEAVYARRGRPSVPPEMLLKALLLQILFSIRSERQLVEAINYNLLYRWFVGLNIEDKV WDHSTFSANRERLFNEDLARAFFERVKLSAQWGKLASDEHFSVDGTLIDAWASHKSFK RKDDDSGTPPGRNPEVDFKGQERCNDTHESTTDADARLFKKSQGDKSRLCHMGHILME NRNGLIVDVEITHASGTAEREAALAMLERRGNRNKRATVGADKGYDSKAFIKGCRKLK VTPHVAAKDKHSAVDARVTRHEGYKTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQAKL TGQALLCFATYNLVRMGSIGGWWDAHHA" misc_feature complement(2150393..2150620) /locus_tag="Alide_2101" /note="Transposase domain (DUF772); Region: DUF772; cl12084" /db_xref="CDD:196330" misc_feature complement(2149736..2150137) /locus_tag="Alide_2101" /note="Transposase DDE domain; Region: DDE_Tnp_1; pfam01609" /db_xref="CDD:144990" gene 2150892..2151020 /locus_tag="Alide_2102" /pseudo /db_xref="GeneID:10104155" gene 2151028..2151564 /locus_tag="Alide_2103" /db_xref="GeneID:10104156" CDS 2151028..2151564 /locus_tag="Alide_2103" /inference="similar to AA sequence:KEGG:Mnod_2441" /note="KEGG: mno:Mnod_2441 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126732.1" /db_xref="GI:319762795" /db_xref="GeneID:10104156" /translation="MYYDPKAQEITMNAQDSDGAPLPVLRESPPAYDPLKYTLDAGGV EYGEHGWSLSYVLRQLPAETVRHNLMVAVSQKRWAVETGGLTLPGGATVGTGIDDQNR ITSVIATAQLAGVASVDFKARDSWVTLTLDQVRGIATSIALHVQACFSAERAHHEALA AAADEDLWPYDINVGWPA" gene complement(2151672..2151911) /locus_tag="Alide_2104" /db_xref="GeneID:10104157" CDS complement(2151672..2151911) /locus_tag="Alide_2104" /inference="similar to AA sequence:KEGG:Vapar_5547" /note="KEGG: vap:Vapar_5547 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126733.1" /db_xref="GI:319762796" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104157" /translation="MPLPHSTHRRALLASAILALAATVHAQAPAPADYPVKPVTMVVP FAAGSVTDLLARIVAQRLGDALGQPVVVDNRAGAD" sig_peptide complement(2151831..2151911) /locus_tag="Alide_2104" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 27" misc_feature complement(<2151678..2151749) /locus_tag="Alide_2104" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2152022..2152939 /locus_tag="Alide_2105" /db_xref="GeneID:10104158" CDS 2152022..2152939 /locus_tag="Alide_2105" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hmg:100212933 similar to lysR transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126734.1" /db_xref="GI:319762797" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10104158" /translation="MLLSRNLLAFIAVAEELHFGRAAQRLHISQPPLSQQIRQFEEEV GAPLLVRTTRSVQLTPAGRLMLERAHLLLAEAGAALHSVRRHAVGDEGVLTLGFTHST VYRVLPKVLHAFRQACPNVVLELRQLTSDLLVQEVRSGRLDVAMLRFSSSMESADLMS RVITHDPMVLVLPLGHPLAAHRRVPVRLLQGLPWVGYEIEGARYFHELEEKVLAGARV RPSVQHRSLLPTLLALVEAGMGAALAPASAAQGGAGRIEWRELSLPEGCAPLDAVLSC VWAADNCNPVVQRFLDCLSDAVLQDEGAG" misc_feature 2152034..2152204 /locus_tag="Alide_2105" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2152049..2152903 /locus_tag="Alide_2105" /note="DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986" /db_xref="CDD:182183" misc_feature 2152298..2152903 /locus_tag="Alide_2105" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature order(2152313..2152315,2152334..2152336,2152343..2152348, 2152352..2152357,2152364..2152366,2152388..2152390, 2152394..2152396,2152400..2152402,2152538..2152540, 2152640..2152645,2152697..2152702,2152718..2152723, 2152727..2152732,2152784..2152786) /locus_tag="Alide_2105" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature order(2152316..2152318,2152463..2152465,2152610..2152615, 2152634..2152636) /locus_tag="Alide_2105" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene 2152974..2153753 /locus_tag="Alide_2106" /db_xref="GeneID:10104159" CDS 2152974..2153753 /locus_tag="Alide_2106" /inference="protein motif:PFAM:PF07729" /note="KEGG: vap:Vapar_5148 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH" /codon_start=1 /transl_table=11 /product="gntr domain protein" /protein_id="YP_004126735.1" /db_xref="GI:319762798" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10104159" /translation="MTLQFQPVASGARLADQVADALEAEIRGGRLAPGARLPTEAVLA TQFAVSRTVVREAVSRLKSLGMVDSRQGSGVYVRAAGAEPLRFEAAHLASRDAVVQMA ELRRPLESEVAALAAERRTPQDLARIRAAIGALDEAVAAGQGGAEQDLAFHLAVAEAA HNPFLIGTLQYLHGLLQGAIRVTRANEARRDDFAREVAREHERIAQAIEAGDPVAARE AAKTHMDNAIRRIGQADPAFWRQEGARLAQPLVEGRATRQR" misc_feature 2153001..2153675 /locus_tag="Alide_2106" /note="Transcriptional regulators [Transcription]; Region: FadR; COG2186" /db_xref="CDD:32369" misc_feature 2153013..2153207 /locus_tag="Alide_2106" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(2153016..2153018,2153085..2153087,2153091..2153096, 2153118..2153132,2153136..2153141,2153148..2153150, 2153178..2153183,2153187..2153198) /locus_tag="Alide_2106" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 2153271..2153651 /locus_tag="Alide_2106" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene 2153906..2155228 /locus_tag="Alide_2107" /db_xref="GeneID:10104160" CDS 2153906..2155228 /locus_tag="Alide_2107" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126736.1" /db_xref="GI:319762799" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10104160" /translation="MSSSVSAVLPAAGAEGALEKRAYGKVFWRLVPFLMLCYVVAYLD RVNVGFAKLQMAQDLGFSETVFGLGAGIFFLGYFLFEVPSNLLLHRVGARMWIARIMI TWGILSGCFMFVESPTGFYVLRFLLGVAEAGFYPGVILYLTYWYPAHRRARIIAVFMS AIPVAGIFGNPLSGWIMDAFHGASSLQGWQWMFLIEAVPAVLVGIMVLQYLDNGIQKA RWLTAEEKALLEREIEADHAQGGAQGPHSVAGVFRDMRVWWMALIYFAFVMGQYALTF WMPTLVKATGVQGNFHIGLLSAIPFLCAIVAMNLFGRSADTRRERRWHLIVPSLMGAV GFTVAASYTQNTVVALAFLSLAAAGVLTCAPLFWSLPTAFLSGTAAAAGIAAINSVGN LAGFVSPYLIGYLKDLTGSTQIGMYVLSAVLVLGAIGVWLVPRKLVNR" misc_feature 2153978..2155180 /locus_tag="Alide_2107" /note="4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332" /db_xref="CDD:131385" misc_feature 2153996..2155207 /locus_tag="Alide_2107" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(2154038..2154040,2154047..2154055,2154059..2154064, 2154113..2154115,2154122..2154127,2154134..2154136, 2154146..2154151,2154155..2154160,2154296..2154301, 2154308..2154313,2154320..2154325,2154332..2154334, 2154368..2154373,2154380..2154385,2154401..2154403, 2154707..2154709,2154716..2154721,2154728..2154733, 2154740..2154742,2154782..2154784,2154794..2154796, 2154806..2154808,2154815..2154817,2154827..2154829, 2154974..2154976,2154983..2154988,2154995..2154997, 2155007..2155012,2155019..2155021,2155052..2155057, 2155064..2155069,2155076..2155081,2155088..2155090) /locus_tag="Alide_2107" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 2155240..2156130 /locus_tag="Alide_2108" /db_xref="GeneID:10104161" CDS 2155240..2156130 /locus_tag="Alide_2108" /EC_number="1.1.1.31" /inference="protein motif:PRIAM:1.1.1.31" /note="KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="YP_004126737.1" /db_xref="GI:319762800" /db_xref="InterPro:IPR002204" /db_xref="InterPro:IPR006115" /db_xref="GeneID:10104161" /translation="MSASQPTVGLVGLGAMGLGMAQSLRRAGHAPHVFDLRREVAQDF ARDGGTACETLAELGARCDVVVSVVVNAAQTESVLFGDDGVAATMRPGSLFVMCSTVD PNWSVALESRLAKQGILYLDAPISGGAAKAASGQITMMTAGTPEAYTRAGGVLDAMAA KVYRLGDKAGAGSKVKIINQLLAGVHIAAAAEAMALGLREGVDPAALYEVITHSAGNS WMFENRMAHVLAGDYTPLSAVDIFVKDLGLVLDVARASKFPLPLSSTAHQMFMQASTA GFAREDDSAVIKIFPGITLP" misc_feature 2155303..2156109 /locus_tag="Alide_2108" /note="3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084" /db_xref="CDD:32267" misc_feature 2155309..>2155773 /locus_tag="Alide_2108" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 2156201..2157214 /locus_tag="Alide_2109" /db_xref="GeneID:10104162" CDS 2156201..2157214 /locus_tag="Alide_2109" /inference="protein motif:PFAM:PF01370" /note="PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="nad-dependent epimerase/dehydratase" /protein_id="YP_004126738.1" /db_xref="GI:319762801" /db_xref="GO:0003824" /db_xref="GO:0050662" /db_xref="InterPro:IPR001509" /db_xref="GeneID:10104162" /translation="MNILITGGSGFLGARLARTLLAQGSLALAGAPAQPIERVVLVDR VAPPADLAADARVQPLLGDLVEQLAAGALPLAEVQAVFHLAAAVSGECEADFDLGMRS NLDATRQLLEGCRRAGHAPVFVFSSSVAVFGDSPEQPLPAVIEDTTLPTPQNSYGIQK FIGEQLVADCTRKGFVQGRNVRLMTVSVRPGRPNGAASSFLSGMLREPLAGERARCPV APGTAVALSSPGNTVRGIIRASTASAAEWGARTAVNLPALTTTVGEMAQALERVAGKE ATALIDWEPDAQIARIITGWPSRFAPKRAQALGLAADESFEAILRDYVRENPQAVKLA VKG" misc_feature 2156201..2157178 /locus_tag="Alide_2109" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature 2156201..2157160 /locus_tag="Alide_2109" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(2156219..2156221,2156225..2156230,2156234..2156236, 2156321..2156329,2156450..2156458,2156576..2156584, 2156666..2156668,2156678..2156680,2156747..2156758) /locus_tag="Alide_2109" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(2156507..2156509,2156582..2156584,2156666..2156668, 2156678..2156680) /locus_tag="Alide_2109" /note="active site" /db_xref="CDD:187535" gene 2157218..2158480 /locus_tag="Alide_2110" /db_xref="GeneID:10104163" CDS 2157218..2158480 /locus_tag="Alide_2110" /inference="protein motif:PFAM:PF07005" /note="PFAM: type III effector Hrp-dependent outers; KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers" /codon_start=1 /transl_table=11 /product="type iii effector hrp-dependent outer domain protein" /protein_id="YP_004126739.1" /db_xref="GI:319762802" /db_xref="InterPro:IPR010737" /db_xref="GeneID:10104163" /translation="MGKLLLGCIADDFTGATDLANNLVRAGMRVVQAIGVPDGPLAAD VDAVVVALKSRTNPVDEAVAQSLAALRWLQGQGAHQIYFKYCSTFDSTPAGNIGPVTE ALMDALGTEFTIATPAFPDNKRTVFKGYLFVGDVLLSESGMQNHPLTPMADPNLVRVM QSQCRRKVGLIDHAVVARGAAAVTERIAQLKAEGVAIAIVDAVSNDDLLRMGPALAAL PLVTAGSGVAMALPANFGFAPSPAASVLPFGSGLRAVVSGSCSLATNRQVQDFIARGG AALAIDPLRIADGADVAAEALAWATPLLARGPVLVYSTADSGAVKSVQSRLGAEEAGA MVERTIASIARGLVERGVRQLVVAGGETSGACVQALGITQMQIGPQIDPGVPWCHAQA LGAGLHITLKSGNFGGDDFFTRAFEVLA" misc_feature 2157227..2158477 /locus_tag="Alide_2110" /note="Protein of unknown function, DUF1537; Region: DUF1537; cl01345" /db_xref="CDD:194106" gene 2158477..2159142 /locus_tag="Alide_2111" /db_xref="GeneID:10104164" CDS 2158477..2159142 /locus_tag="Alide_2111" /inference="protein motif:PFAM:PF00596" /note="PFAM: class II aldolase/adducin family protein; KEGG: vap:Vapar_5143 aldolase" /codon_start=1 /transl_table=11 /product="class ii aldolase/adducin family protein" /protein_id="YP_004126740.1" /db_xref="GI:319762803" /db_xref="GO:0046872" /db_xref="InterPro:IPR001303" /db_xref="GeneID:10104164" /translation="MTEAQAREEICRVGRSLFERGYAHATAGNISVRLDDGGFLITPT DACLGFLDPARLARLDAQGRQVSGDRASKTIALHTRIYAAARAFDAQTACVIHTHSTH CVALTLQPAEGELLPAITPYFVMKVGHVPVIPYHRPGAPGAAEAVAQAIARYGAQGTP LRAVMLERLGPNVWHDTPAAAMATLEELEETARLWLLSSPKPAALDAAQIDELRAAFG ARW" misc_feature 2158501..>2159010 /locus_tag="Alide_2111" /note="Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II)...; Region: Aldolase_II; cl00214" /db_xref="CDD:193713" misc_feature order(2158510..2158512,2158522..2158524,2158546..2158548, 2158615..2158617,2158621..2158626,2158771..2158773, 2158777..2158782,2158795..2158800,2158807..2158809, 2158831..2158833,2158834..2158839,2158879..2158881, 2158978..2158980) /locus_tag="Alide_2111" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:29521" misc_feature order(2158561..2158563,2158606..2158611,2158690..2158698, 2158765..2158767,2158771..2158773,2158981..2158983) /locus_tag="Alide_2111" /note="active site" /db_xref="CDD:29521" misc_feature order(2158765..2158767,2158771..2158773,2158981..2158983) /locus_tag="Alide_2111" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:29521" gene 2159152..2159961 /locus_tag="Alide_2112" /db_xref="GeneID:10104165" CDS 2159152..2159961 /locus_tag="Alide_2112" /EC_number="5.3.1.22" /inference="protein motif:PRIAM:5.3.1.22" /note="KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel" /codon_start=1 /transl_table=11 /product="hydroxypyruvate isomerase" /protein_id="YP_004126741.1" /db_xref="GI:319762804" /db_xref="InterPro:IPR012307" /db_xref="GeneID:10104165" /translation="MPRFAANLSMLYGEHAFLDRFAAAAADGFKGVEYLFPYEFPAAE IARRLKDNGLAQVLFNAPPGDWAAGERGLACLPGREAEFREGFARALDYAAALDCPRI HVMAGLVPAGQTREALRPLYIDNLRWAAEQAAQAGRNVLIEPINTRNIPGFFLNRQDD AHAIVQAVGAPNLQVQFDLYHCQIVEGDVAMKIRQYLPTGRVGHFQIAGVPERHEPDI GELNHPYLFSVIDEVAAQCGWQGWVGCEYLPARGAVPGGTTAGLGWVRGLL" misc_feature 2159152..2159949 /locus_tag="Alide_2112" /note="Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]; Region: Hfi; COG3622" /db_xref="CDD:33421" gene complement(2160003..2160836) /locus_tag="Alide_2113" /db_xref="GeneID:10104166" CDS complement(2160003..2160836) /locus_tag="Alide_2113" /inference="protein motif:PFAM:PF06167" /note="PFAM: protein of unknown function DUF980; KEGG: ajs:Ajs_1618 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126742.1" /db_xref="GI:319762805" /db_xref="InterPro:IPR010384" /db_xref="GeneID:10104166" /translation="MPRFLSRLARRVRSAVAPIPDIGADLWLQTLNRYPFLAALPLAD QAKLRALSALFLHRKEFSGAHGLVVTDAMAVAIAAQACLPLLHWGEPGKALAWYDDFV GIVVHPAEALARRKAVDEAGVVHHYDEVLLGEAMENGPVMLSWPAVQGAGREGHATSV VIHEFVHKIDMKNGGADGCPPLPPGFLGTANARAAHAAWRAAWEPAYEQFRERVIIAE RFGGEWPWLDAYGATAPAEFFAVACEAYFVHRERFAQEFPALLPVLDALFRPTQELQA K" misc_feature complement(2160030..2160785) /locus_tag="Alide_2113" /note="Phosphoenolpyruvate:glucose-phosphotransferase regulator; Region: MtfA; cl01267" /db_xref="CDD:186408" gene complement(2160841..2161623) /locus_tag="Alide_2114" /db_xref="GeneID:10104167" CDS complement(2160841..2161623) /locus_tag="Alide_2114" /inference="protein motif:PFAM:PF00149" /note="PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_2095 UDP-2,3-diacylglucosamine hydrolase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004126743.1" /db_xref="GI:319762806" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10104167" /translation="MAATVPPIAELAAPAAWRTVDFVSDLHLEGSHPATVQAFARYLA ATPADAVFLLGDLFEVWVGDDAIDERGSFESECCELLAQAARRRPLFFMHGNRDFLVG EGFTRRTDIPVLADPTALTFAGRHWLLSHGDALCLQDVEYQRFRALARDPQWQAQLLA RPLHERRAQGRSARSESEARKQAGTAPYADVDNAAAIEWLRAARAGALIHGHTHLPAN HVLAPGLARHVLTDWDLEATPPRAGVLRLTDAGLQRIPLAPT" misc_feature complement(2160925..2161560) /locus_tag="Alide_2114" /note="Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398" /db_xref="CDD:163641" misc_feature complement(order(2160982..2160984,2160988..2160990, 2161231..2161233,2161333..2161338,2161456..2161458, 2161543..2161545,2161549..2161551)) /locus_tag="Alide_2114" /note="putative active site [active]" /db_xref="CDD:163641" misc_feature complement(order(2160982..2160984,2160988..2160990, 2161231..2161233,2161336..2161338,2161456..2161458, 2161543..2161545,2161549..2161551)) /locus_tag="Alide_2114" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163641" gene complement(2161628..2162155) /locus_tag="Alide_2115" /db_xref="GeneID:10104168" CDS complement(2161628..2162155) /locus_tag="Alide_2115" /EC_number="5.2.1.8" /inference="protein motif:PRIAM:5.2.1.8" /note="KEGG: dia:Dtpsy_2094 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="YP_004126744.1" /db_xref="GI:319762807" /db_xref="InterPro:IPR002130" /db_xref="InterPro:IPR020892" /db_xref="GeneID:10104168" /translation="MSNPQVELHVTINVAETATPGVITLELDSANAPKSTENFLAYVN KGHYDGTIFHRVIKGFMIQGGGFTPDMKQKPTDTPIENEAANGLKNDQYTIAMARTGD PHSATAQFFINVVDNGFLNHTAPTPQGWGYAVFGKVVKGQDVVDAIKKVRTTRKGFHD DVPFDAVVIDKAVAL" misc_feature complement(2161640..2162095) /locus_tag="Alide_2115" /note="cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920" /db_xref="CDD:29391" misc_feature complement(order(2161760..2161762,2161796..2161801, 2161823..2161825,2161847..2161864,2161967..2161969, 2161973..2161978,2161985..2161987,2161991..2161993)) /locus_tag="Alide_2115" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29391" gene complement(2162177..2162764) /locus_tag="Alide_2116" /db_xref="GeneID:10104169" CDS complement(2162177..2162764) /locus_tag="Alide_2116" /EC_number="5.2.1.8" /inference="protein motif:PRIAM:5.2.1.8" /note="KEGG: dia:Dtpsy_2093 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="YP_004126745.1" /db_xref="GI:319762808" /db_xref="InterPro:IPR002130" /db_xref="InterPro:IPR020892" /db_xref="GeneID:10104169" /translation="MISRRTSALALAGAMLGTLLGTPPALAQTAAAPQVKLATSMGDI VLQLDAAKAPRTVENFLSYVRDKHYDGTIFHRVIDGFMIQGGGFTPDMQQKPTKAPIQ NEAANGLKNDRYTIAMARTADPNSATAQFFINVKDNAMLNAPSPDGHGYAVFGKVVSG TEVVDKIKAVATGNRGPYQNVPTTPVIIQSATLVK" sig_peptide complement(2162681..2162764) /locus_tag="Alide_2116" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 28" misc_feature complement(2162192..2162656) /locus_tag="Alide_2116" /note="cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920" /db_xref="CDD:29391" misc_feature complement(order(2162312..2162314,2162342..2162347, 2162369..2162371,2162393..2162410,2162513..2162515, 2162519..2162524,2162531..2162533,2162537..2162539)) /locus_tag="Alide_2116" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29391" gene complement(2162761..2164131) /locus_tag="Alide_2117" /db_xref="GeneID:10104170" CDS complement(2162761..2164131) /locus_tag="Alide_2117" /inference="protein motif:PFAM:PF03734" /note="PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG" /codon_start=1 /transl_table=11 /product="erfk/ybis/ycfs/ynhg family protein" /protein_id="YP_004126746.1" /db_xref="GI:319762809" /db_xref="InterPro:IPR005490" /db_xref="GeneID:10104170" /translation="MPLSPFPFGHALATAVMAGLLAAPAAAAQGEKKARQPSGKKAQQ RKPVRAAAPAPLRDGDAERRLLEIYRLTAEGHARQALPLAERLVRDHPNFQLAQLALG DLLAARARPVGRVGDVAMPPPAAAARPMPAQIPGISLASAAAAPTPQALPPAAIDTLS DLRAESRLRVDALKARPPQGSIPAQFLELSARTRHAIAMDASRSRLYLFENTDKGLVL VADYYASVGKLGTEKQAEGDQRTPLGVYYITSRLDPATLKDFYGAGALPINYPNPLDL RRGKTGSGIWLHGTPPSQFSRAPLATDGCLVLANPDLERLLKTVEPRTTPVVIARELR WVKPQALQAERQSFHDVLEAWRSAKSQGDTQRLLGFYAPEFQSHRNQDLQQWSQALQA EAQALQGRAVALKDKSVLRWTDSSDTMVVTFGEVTEGTRTGPVKRQYWTRKGARWQIF FEGVIG" sig_peptide complement(2164048..2164131) /locus_tag="Alide_2117" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.545 at residue 28" misc_feature complement(2163145..2163552) /locus_tag="Alide_2117" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene complement(2164210..2165298) /locus_tag="Alide_2118" /db_xref="GeneID:10104171" CDS complement(2164210..2165298) /locus_tag="Alide_2118" /inference="protein motif:PFAM:PF00515" /note="PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: aav:Aave_2319 TPR repeat-containing protein" /codon_start=1 /transl_table=11 /product="tetratricopeptide tpr_1 repeat-containing protein" /protein_id="YP_004126747.1" /db_xref="GI:319762810" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10104171" /translation="MKHASCPLSRLLRIATLSALLGMPLAHAADDYSEITQLLRTGKA QEALVKADQRIAANPRDPQLRFLRGVAQADTGKQADAIATFTKLTEDYPELPEPYNNL AVLYANQNQLDKARAALEMAIRTNPSYATAHENLGDIYAKLAGQAYNKALQLDATQAN SLRPKLALIRELFSADAKATVSKVASSARAPAPAPAAAPTPAPAAAPAPAAAPAPAPA PTPAPAAAPQAAPAAPADAPAPAAPKAAASSSAEKDVAKAVHAWAAAWEGQDMNAYLG AYAKNFRPQNQSSRAAWEKERRERIVGRAKITVDISDLRVHVDGDKAQARFRQQYSSG SMNVSSRKTLDMVNQGGHWSIVRESTGG" sig_peptide complement(2165212..2165298) /locus_tag="Alide_2118" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 29" misc_feature complement(2164834..2165103) /locus_tag="Alide_2118" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2164870..2164875,2164882..2164887, 2164894..2164899,2164975..2164980,2164987..2164992, 2164996..2165001,2165086..2165091,2165098..2165103)) /locus_tag="Alide_2118" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(2164846..2164848,2164855..2164857, 2164867..2164869,2164888..2164890,2164933..2164935, 2164942..2164944,2164954..2164956,2164990..2164992, 2165035..2165037,2165044..2165046,2165056..2165058, 2165092..2165094)) /locus_tag="Alide_2118" /note="TPR motif; other site" /db_xref="CDD:29151" gene 2165522..2166898 /locus_tag="Alide_2119" /db_xref="GeneID:10104172" CDS 2165522..2166898 /locus_tag="Alide_2119" /EC_number="6.1.1.16" /inference="protein motif:TFAM:TIGR00435" /note="TIGRFAM: cysteinyl-tRNA synthetase; KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR" /codon_start=1 /transl_table=11 /product="cysteinyl-tRNA synthetase" /protein_id="YP_004126748.1" /db_xref="GI:319762811" /db_xref="GO:0004817" /db_xref="GO:0005524" /db_xref="InterPro:IPR002308" /db_xref="InterPro:IPR015273" /db_xref="InterPro:IPR015803" /db_xref="GeneID:10104172" /translation="MSLRIYNTLSRALEDFSPLEAGHVRMYVCGMTVYDLCHLGHARS MIAFDVVQRWLRASGLAVTYVRNITDIDDKIIRRAVENGETIRSLTDRMIDALHEDAD ALGIERPTHEPRATEYVPQMLSMIGTLQSRGLAYQAANGDVNYAVRKFPGYGRLSGKS LDELNAGERVAVQDGKLDPLDFVLWKGAKPEEPAEVKWQSAYGEGRPGWHIECSAMGC TLLGESFDIHGGGADLAFPHHENEIAQSEGATGKPFARVWMHNGFINVDNEKMSKSLG NFFTIRDVLKEYDAETVRFFVVRSHYRSPLNYSDVHLDDARAALKRLYTALSLVAPAP VAIDWAEPHAARFKAAMDEDFGTPEAVAVLFDLAGEVNRSKSPGAAGLLKALGGHLGL LQGDPQAFLKAGAGLDEPAIQARIAARAAAKAAKNFAEADRIRADLLAQGIVLKDSAA GTTWEAAQ" misc_feature 2165522..2166886 /locus_tag="Alide_2119" /note="cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260" /db_xref="CDD:178951" misc_feature 2165531..>2165866 /locus_tag="Alide_2119" /note="catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672" /db_xref="CDD:173899" misc_feature order(2165606..2165617,2165633..2165635,2165639..2165644, 2165651..2165656,2165720..2165722,2165726..2165728) /locus_tag="Alide_2119" /note="active site" /db_xref="CDD:173899" misc_feature 2165633..2165644 /locus_tag="Alide_2119" /note="HIGH motif; other site" /db_xref="CDD:173899" misc_feature <2166146..2166448 /locus_tag="Alide_2119" /note="catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672" /db_xref="CDD:173899" misc_feature 2166329..2166343 /locus_tag="Alide_2119" /note="KMSKS motif; other site" /db_xref="CDD:173899" misc_feature 2166449..2166883 /locus_tag="Alide_2119" /note="Anticodon-binding domain of cysteinyl tRNA synthetases; Region: Anticodon_Ia_Cys; cd07963" /db_xref="CDD:153417" misc_feature order(2166455..2166457,2166464..2166466,2166476..2166478, 2166485..2166487,2166494..2166496,2166503..2166505, 2166587..2166589,2166593..2166598,2166605..2166607, 2166614..2166619,2166626..2166628,2166635..2166637, 2166776..2166778,2166788..2166790,2166803..2166805, 2166815..2166817,2166824..2166826,2166851..2166862) /locus_tag="Alide_2119" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153417" misc_feature order(2166776..2166778,2166788..2166790,2166803..2166805, 2166815..2166817,2166824..2166826,2166854..2166862) /locus_tag="Alide_2119" /note="anticodon binding site; other site" /db_xref="CDD:153417" gene 2166944..2167591 /locus_tag="Alide_2120" /db_xref="GeneID:10104173" CDS 2166944..2167591 /locus_tag="Alide_2120" /EC_number="3.2.2.21" /inference="protein motif:PRIAM:3.2.2.21" /note="SMART: HhH-GPD family protein; manually curated; KEGG: dia:Dtpsy_2090 HhH-GPD family protein; PFAM: HhH-GPD family protein" /codon_start=1 /transl_table=11 /product="DNA-3-methyladenine glycosylase ii" /protein_id="YP_004126749.1" /db_xref="GI:319762812" /db_xref="InterPro:IPR003265" /db_xref="GeneID:10104173" /translation="MAAIKKTAEATPPDYWAEACKHLTKRDRVMRRLIPQVGDVAPYP RGDAFSTLARSIVGQQVSVASAQRVWDQFAALPRSMTPRSVLKLKVDDMRAAGLSARK VEYLVDLALHFDSGQLHVKQWGQMDDAAIVAELVAIRGISRWTADMFLIFHLARPNVL PLDDTTLIQGISRHYFSGDPVSRSDAREVAEAWKPWCSVASWYIWRSLAPLPVDY" misc_feature 2167088..2167561 /locus_tag="Alide_2120" /note="endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056" /db_xref="CDD:28938" misc_feature 2167118..2167558 /locus_tag="Alide_2120" /note="endonuclease III; Region: ENDO3c; smart00478" /db_xref="CDD:128754" misc_feature order(2167121..2167129,2167136..2167138,2167247..2167249) /locus_tag="Alide_2120" /note="minor groove reading motif; other site" /db_xref="CDD:28938" misc_feature 2167355..2167378 /locus_tag="Alide_2120" /note="helix-hairpin-helix signature motif; other site" /db_xref="CDD:28938" misc_feature order(2167385..2167387,2167544..2167546,2167556..2167558) /locus_tag="Alide_2120" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:28938" misc_feature 2167433..2167435 /locus_tag="Alide_2120" /note="active site" /db_xref="CDD:28938" gene 2167643..2168620 /locus_tag="Alide_2121" /db_xref="GeneID:10104174" CDS 2167643..2168620 /locus_tag="Alide_2121" /inference="protein motif:TFAM:TIGR00513" /note="KEGG: ajs:Ajs_1625 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, carboxyl transferase, alpha subunit" /protein_id="YP_004126750.1" /db_xref="GI:319762813" /db_xref="GO:0003989" /db_xref="InterPro:IPR001095" /db_xref="InterPro:IPR011763" /db_xref="InterPro:IPR020582" /db_xref="GeneID:10104174" /translation="MAKKTFLDFEQPIAELESKIEELRYVQNESAVDISEEIDQLSKK SHQLTKDIYSDLTPWQITKIARHPERPYTMDYVREIFTDFVELHGDRHFADDQSIVGG LARFNGHACMVLGHQKGRDTKERAARNFGMSKPEGYRKALRLMKTAEKFRLPVFTFVD TPGAFPGIDAEERGQSEAIGRNIYEMAQLEVPIVTTVIGEGGSGGALAISVADQVIML QYSIYSVISPEGCASILWKTSDKAQDAADAMGITAHRLKALGLVDKIVNEPVGGAHRD HKQMAAFLKRALGDAYRQLSDLKPKELLERRYERLQSYGRFTDTKADSR" misc_feature 2167646..2168599 /locus_tag="Alide_2121" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 2168688..2169695 /locus_tag="Alide_2122" /db_xref="GeneID:10104175" CDS 2168688..2169695 /locus_tag="Alide_2122" /inference="protein motif:TFAM:TIGR02432" /note="KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase" /codon_start=1 /transl_table=11 /product="tRNA(ile)-lysidine synthetase" /protein_id="YP_004126751.1" /db_xref="GI:319762814" /db_xref="GO:0000166" /db_xref="GO:0005524" /db_xref="InterPro:IPR011063" /db_xref="InterPro:IPR012795" /db_xref="InterPro:IPR015262" /db_xref="GeneID:10104175" /translation="MTQSFDAAMHAFAPRLPLAVGLSGGADSTALLLACAGRWPGQVH AFHVHHGLQAAADGFEQHCVALCARLQVPLSVRRVDARHASGQSPEDAARQARYKAFE ALALDNQARAAIGTIALAQHADDQVETLLLALSRGAGVAGLAAMPAQWERGGLHWSRP LLRVAGADVRAWLQQQGEHWVEDPTNADERYTRNRIRRRLLPALQQAFPHFRDTFARS CAHAAQASELLQELARADLAAVGQPPRIAALRLLSRARQANVLRHWLRSAHGTTPASA QLDALLDQIAACATRGHRIHLKVGSGHVVREAGALGWYNRPVLDLISARDGGAPKQPS Q" misc_feature 2168736..2169293 /locus_tag="Alide_2122" /note="N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992" /db_xref="CDD:30179" misc_feature order(2168748..2168756,2168760..2168771,2168826..2168828, 2168832..2168834) /locus_tag="Alide_2122" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30179" gene 2169732..2171003 /locus_tag="Alide_2123" /db_xref="GeneID:10104176" CDS 2169732..2171003 /locus_tag="Alide_2123" /inference="protein motif:TFAM:TIGR00657" /note="KEGG: aav:Aave_2324 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein" /codon_start=1 /transl_table=11 /product="aspartate kinase" /protein_id="YP_004126752.1" /db_xref="GI:319762815" /db_xref="GO:0004072" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR001057" /db_xref="InterPro:IPR001341" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR005260" /db_xref="InterPro:IPR018042" /db_xref="GeneID:10104176" /translation="MALFVHKYGGTSMGSTERIRNVAKRVAKWARAGHQVVVVPSAMS GETNRLLALAKDLAPARASAAFHREQDMLAATGEQASSALLAIALQAEGMEAVSYAGW QVPIRTDSSYTKARIESIDDKRVRADLDAGRVVIITGFQGIDDEGNITTLGRGGSDTS AVAVAAAMKADECLIYTDVDGVYTTDPRVVSQARRLKSVSFEEMLEMASLGSKVLQIR SVEFAGKYKVPMRVLSSFTPWDIDINEEAKSGTLITFEEDEQMEQAVVSGIAFNRDET KISVLGVPDKPGIAYQILGPVADANIEVDVIIQNISKDGRTDFSFTVNHNDHARTLEL LREKVVPALGAQEVVGDTAICKVSIVGIGMRSHVGVAAKMFRVLSEEGINIQMISTSE IKTSVVIEDKYLELAVRALHKAFDLDQPAAA" misc_feature 2169732..2170985 /locus_tag="Alide_2123" /note="aspartate kinase; Reviewed; Region: PRK06635" /db_xref="CDD:180641" misc_feature 2169738..2170493 /locus_tag="Alide_2123" /note="AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive...; Region: AAK_AKii-LysC-BS; cd04261" /db_xref="CDD:58627" misc_feature order(2169750..2169752,2169756..2169764,2170263..2170268, 2170275..2170280) /locus_tag="Alide_2123" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58627" misc_feature order(2169750..2169752,2169870..2169872,2169963..2169965) /locus_tag="Alide_2123" /note="putative catalytic residues [active]" /db_xref="CDD:58627" misc_feature order(2169852..2169854,2169870..2169872,2170203..2170205, 2170287..2170289) /locus_tag="Alide_2123" /note="putative Mg ion binding site [ion binding]; other site" /db_xref="CDD:58627" misc_feature order(2169852..2169857,2169870..2169872,2169963..2169965) /locus_tag="Alide_2123" /note="putative aspartate binding site [chemical binding]; other site" /db_xref="CDD:58627" misc_feature 2170554..2170781 /locus_tag="Alide_2123" /note="ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins; Region: ACT_AKii-LysC-BS-like_1; cd04913" /db_xref="CDD:153185" misc_feature 2170665..2170670 /locus_tag="Alide_2123" /note="putative allosteric regulatory site; other site" /db_xref="CDD:153185" misc_feature 2170797..2170982 /locus_tag="Alide_2123" /note="ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains; Region: ACT_AKii-LysC-BS-like_2; cd04936" /db_xref="CDD:153208" gene complement(2171050..2172405) /locus_tag="Alide_2124" /db_xref="GeneID:10104177" CDS complement(2171050..2172405) /locus_tag="Alide_2124" /inference="protein motif:PFAM:PF00654" /note="PFAM: Cl- channel voltage-gated family protein; KEGG: aav:Aave_4712 Cl-channel, voltage-gated family protein" /codon_start=1 /transl_table=11 /product="cl- channel voltage-gated family protein" /protein_id="YP_004126753.1" /db_xref="GI:319762816" /db_xref="GO:0005247" /db_xref="InterPro:IPR001807" /db_xref="GeneID:10104177" /translation="MHQEPDFFHNLRQEFADGWRWVERSIVLAYAAAAGLCVVAFTLL SNLAFEWFMRLYHWHGGWAVLLWTPALTAAIVWATRRWAPGAAGSGIPQVMAAQEAAL TGAQRSGLVSLRLSIAKIVLAGLGFLAGLSIGREGPSVQVAAGVMHHARRWFGPRTGI TGHALLVAGGAAGIAAAFNAPLAGVLFAIEELARKLESRASGLILSAIVLAGLMGVSA FGNLTYFGRIQVAALGWDALLPGLCVALACGVLGGLFAKVMAASLTGAPNRFNRLRER FPIRFAAAGGLVLAAIGLVTEGATFGAGSEAVKHMLAGHADVPAFFVTLKFIATWLSA WVGAPGGIFAPSLSIGAGIGHNVSLFAGAAIAPALIAMGMAAFLAAVTQAPLTAFIIV MEMVDGHAMVLSLMAAAMLASLVSRMLARPLYGALAQHMLKMALPAPEEAQGGPARQR Q" misc_feature complement(2171209..2172285) /locus_tag="Alide_2124" /note="ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a...; Region: EriC_like; cd01034" /db_xref="CDD:79362" misc_feature complement(2171209..2172195) /locus_tag="Alide_2124" /note="Voltage gated chloride channel; Region: Voltage_CLC; pfam00654" /db_xref="CDD:189656" misc_feature complement(order(2171371..2171385,2171992..2172006, 2172130..2172144)) /locus_tag="Alide_2124" /note="putative ion selectivity filter; other site" /db_xref="CDD:79362" misc_feature complement(2171998..2172000) /locus_tag="Alide_2124" /note="putative pore gating glutamate residue; other site" /db_xref="CDD:79362" misc_feature complement(2171833..2171835) /locus_tag="Alide_2124" /note="putative H+/Cl- coupling transport residue; other site" /db_xref="CDD:79362" gene 2172481..2172573 /locus_tag="Alide_R0031" /note="tRNA-Ser1" /db_xref="GeneID:10104178" tRNA 2172481..2172573 /locus_tag="Alide_R0031" /product="tRNA-Ser" /db_xref="GeneID:10104178" gene 2172850..2174787 /locus_tag="Alide_2125" /pseudo /db_xref="GeneID:10104179" gene complement(2173137..2174051) /locus_tag="Alide_2126" /db_xref="GeneID:10104180" CDS complement(2173137..2174051) /locus_tag="Alide_2126" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic region protein" /protein_id="YP_004126754.1" /db_xref="GI:319762817" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10104180" /translation="MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSAR AQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIVVARCTVERLMRAMGLQGARRG RAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAASDTSTKVST" misc_feature complement(2173155..2173991) /locus_tag="Alide_2126" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(2173320..2173676) /locus_tag="Alide_2126" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(2174048..2174371) /locus_tag="Alide_2127" /db_xref="GeneID:10104181" CDS complement(2174048..2174371) /locus_tag="Alide_2127" /inference="protein motif:PFAM:PF01527" /note="PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase is3/is911 family protein" /protein_id="YP_004126755.1" /db_xref="GI:319762818" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10104181" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADALRIKVLEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature complement(2174114..2174371) /locus_tag="Alide_2127" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 2174784..2175935 /locus_tag="Alide_2128" /db_xref="GeneID:10104182" CDS 2174784..2175935 /locus_tag="Alide_2128" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: dia:Dtpsy_1685 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein" /codon_start=1 /transl_table=11 /product="efflux transporter, rnd family, mfp subunit" /protein_id="YP_004126756.1" /db_xref="GI:319762819" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10104182" /translation="MKVPHLQRRTLALIAAIVPLAALFVYVVLRSGPLAPVAVTLGTV QSRAVAPALAGIGTVQARYIYKIGPTAAGRVQRLDVHVGDMVRAGQVLGEMDPVDLDE RIRAQQAAIKSAEAGLRQAEARQSYALDQARRYGQLVSVRATSEENLATRQQELAVAD AALAAAREDASRLRSELQALRAQRGNLRLVAPVAGLVAARDADPGTTVVAGQAVIRLM DPASLWVDARFDQISAQGLAAGLPAEVVLRSRHGQPLAARVLRTEPLADAVTEELLAK VIFDALPRPLPPIGELAEVTVHLPPLPEAPTIPNAALRTVDGQRGVWKFKDGELAFAP LRLGRADLDGQVQVREGLAVGDAIVVYSERTLGPKSRVHVVERIAGVSP" misc_feature 2174898..2175908 /locus_tag="Alide_2128" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 2175932..2177131 /locus_tag="Alide_2129" /db_xref="GeneID:10104183" CDS 2175932..2177131 /locus_tag="Alide_2129" /inference="protein motif:PFAM:PF02687" /note="PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_1686 protein of unknown function DUF214" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126757.1" /db_xref="GI:319762820" /db_xref="InterPro:IPR003838" /db_xref="GeneID:10104183" /translation="MISLAGRDILHAWGKFVFTGIGLGLLIGVTLTMAGVYRGMVDDG RVLLDNSGADLWVVQRDTLGPYAESSSVPDDLWRSLRAMPGVAQAANVTYLTMQVGHG DKDVRAMVVGVAAGGPGVPGWPPQLVAGRQITRGHYEAVADAAAGVRLGDVLKIRRNR YTVVGLTRRMVSSAGDPMVFIPLKDAQAAQFLKDNDAVLMQRRRTEANPAFNRPAVPD LLDAVIASQTSNGQVNAVLVRLRPGFTPQEVADPIRLWLRLTVYDRAQMEGILVGKLI ATSAKQIGMFLVILALVSAAIVAFLIYTLTMDKIREIAVLKLIGTRNRTIAAMIVQQA LVLGLIGFVVGKITATFAAPLFPKYVLLVPFDTVAGFAAVMAICVLSSVVAIRVALRV DPAQAIG" misc_feature 2176850..2177113 /locus_tag="Alide_2129" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 2177136..2177846 /locus_tag="Alide_2130" /db_xref="GeneID:10104184" CDS 2177136..2177846 /locus_tag="Alide_2130" /inference="protein motif:PFAM:PF00005" /note="KEGG: ajs:Ajs_1836 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126758.1" /db_xref="GI:319762821" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10104184" /translation="MKRQGIRIERLSKRYGAGDTAFLALKDVNMQVAPGEVVGLIGPS GSGKSTLLKCLGAVIDPTSGRMTLDDRVIYDDGWKVRDLGALRRDQIGFVFQAPYLIP FLDATDNVALLPMLAGVPNDEARRRALELLTALDVQHRAKAMPSQLSGGEQQRVAIAR GLVNRPPVILADEPTAPLDSQRAMAVIRILNDMARRLQTAVIVVTHDEKIIPTFKRIY HIRDGVTHEEAGEGRGFE" misc_feature 2177151..2177819 /locus_tag="Alide_2130" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature 2177151..2177804 /locus_tag="Alide_2130" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature 2177259..2177282 /locus_tag="Alide_2130" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature order(2177268..2177273,2177277..2177285,2177421..2177423, 2177649..2177654,2177751..2177753) /locus_tag="Alide_2130" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature 2177412..2177423 /locus_tag="Alide_2130" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature 2177577..2177606 /locus_tag="Alide_2130" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature 2177637..2177654 /locus_tag="Alide_2130" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature 2177661..2177672 /locus_tag="Alide_2130" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature 2177739..2177759 /locus_tag="Alide_2130" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene complement(2177917..2179245) /locus_tag="Alide_2131" /db_xref="GeneID:10104185" CDS complement(2177917..2179245) /locus_tag="Alide_2131" /inference="protein motif:TFAM:TIGR02283" /note="KEGG: ajs:Ajs_1837 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein" /codon_start=1 /transl_table=11 /product="lytic murein transglycosylase" /protein_id="YP_004126759.1" /db_xref="GI:319762822" /db_xref="InterPro:IPR002477" /db_xref="InterPro:IPR011970" /db_xref="GeneID:10104185" /translation="MARAVTMGAMRSLLLPTAIGLAVLAGCASQPTPPAAPAPIPATP PPAAATPAPLPAPEPEPAASGTADTIAGFHAWLEAFAREALAAGIHTQTVDAMLARAQ WQPRVVELDRAQPEFTRTPWAYLDSAVSPQRVAQGREQRRLHAAALEAAEQRYGVPAS IITAIWGMESNYGRNFGSFSTIDALATLAYDGRRRDWARGELLAALRIVDQGDMAADA LVGSWAGAMGHTQFLPSVFLRFAVDADGDGRRDIWGSVPDVAASTANFLAHSGWKSGQ PWGVEVRLPPGFDYARAELGVRQTSDAWAAEGVRGIDGAALPQLPDASILTPAGARGP AILVGPNFRALLRYNNSVNYALAVGLLARRIDGGAGLSTPWPRDLQPLSRSDVKTLQE LLNARGLDAGTPDGVAGPATRAGVRRYQQSLGLPADGYATRELLQQLQEP" misc_feature complement(2178127..2179047) /locus_tag="Alide_2131" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" misc_feature complement(2178145..2179032) /locus_tag="Alide_2131" /note="lytic murein transglycosylase; Region: MltB_2; TIGR02283" /db_xref="CDD:162796" misc_feature complement(2177929..2178099) /locus_tag="Alide_2131" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene 2179292..2180728 /locus_tag="Alide_2132" /db_xref="GeneID:10104186" CDS 2179292..2180728 /locus_tag="Alide_2132" /EC_number="3.1.11.1" /inference="protein motif:PRIAM:3.1.11.1" /note="PFAM: Exonuclease domain protein; Exonuclease RNase T and DNA polymerase III; KEGG: ajs:Ajs_1838 exonuclease I; SMART: Exonuclease" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease i" /protein_id="YP_004126760.1" /db_xref="GI:319762823" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR013520" /db_xref="InterPro:IPR013620" /db_xref="GeneID:10104186" /translation="MHTFLWHDYETFGTDTRRDRPAQFAAIRTDAQLNEIGEPLMLYC RPANDYLPDPQSCLITGITPQLCLEKGVPEHQFAARIEAELALPGTIGVGYNTIRFDD EITRFMFWRNLMDPYAREWQNQCGRWDLLDVVRLAYALRPDGIEWPVADGKTSFRLEN LTKANGLAHEAAHDALSDVRATIALARLVRARNPRLFDFALGLRKKDRVAAELRLPAT AQTARPFLHVSGMFGAERGCLAVMWPLASHPTNKNELLAWDLAHDPAELATLSADEIR QRLFTRAADLPEGVTRLPLKSVHLNKSPMVVGNVNTLTPAVAQRWGLDMAQAARHAEA ARRLPDMSAIWAQVFQRPQEGPVDVDQDLYGGFLGNEDRRRLNRLRALSPEELARERP GFDDERLAELVWRYRARNFPQTLSPEEHERWEAHRVAMLVEGEGGGLTFDALFERLDE LGEQADDERTEAILGAIYDYAEGIAPGM" misc_feature 2179292..2180725 /locus_tag="Alide_2132" /note="exonuclease I; Provisional; Region: sbcB; PRK11779" /db_xref="CDD:183310" misc_feature 2179304..2179852 /locus_tag="Alide_2132" /note="N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins; Region: ExoI_N; cd06138" /db_xref="CDD:99841" misc_feature order(2179313..2179324,2179328..2179333,2179466..2179471, 2179574..2179579,2179586..2179594,2179808..2179810, 2179823..2179825) /locus_tag="Alide_2132" /note="active site" /db_xref="CDD:99841" misc_feature order(2179313..2179324,2179328..2179330,2179574..2179579, 2179586..2179591,2179808..2179810,2179823..2179825) /locus_tag="Alide_2132" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99841" misc_feature order(2179313..2179315,2179319..2179321,2179592..2179594, 2179808..2179810,2179823..2179825) /locus_tag="Alide_2132" /note="catalytic site [active]" /db_xref="CDD:99841" misc_feature 2179901..2180713 /locus_tag="Alide_2132" /note="Exonuclease C-terminal; Region: Exonuc_X-T_C; pfam08411" /db_xref="CDD:149465" gene 2180700..2181548 /locus_tag="Alide_2133" /db_xref="GeneID:10104187" CDS 2180700..2181548 /locus_tag="Alide_2133" /inference="protein motif:PFAM:PF02146" /note="PFAM: Silent information regulator protein Sir2; KEGG: ajs:Ajs_1839 silent information regulator protein Sir2" /codon_start=1 /transl_table=11 /product="silent information regulator protein sir2" /protein_id="YP_004126761.1" /db_xref="GI:319762824" /db_xref="GO:0008270" /db_xref="GO:0070403" /db_xref="InterPro:IPR003000" /db_xref="GeneID:10104187" /translation="MPKASPPACDPGLAIGPLRDWLRLHPRLFVVTGAGCSTGAGIPD YRDENGDWKRPQPVTYQAFMGDAATRRRYWARSLAGWPVMGGARPGAAHHALARLERQ GRIELLLTQNVDGLHHAAGSRRVIDLHGRIDTVRCMDCEARTPRAELQRELLRRNPAW AALQASAAPDGDADLEGRDFQSFDVPPCPRCGTGLLKPDVVFFGESVPRGRVDAAHAA LARADAVLVAGSSLMVYSGYRFVQAAAQRGLPVAAINRGRTRADGLLALKLEADVGQT LEQLSY" misc_feature 2180715..2181539 /locus_tag="Alide_2133" /note="NAD-dependent deacetylase; Provisional; Region: PRK05333" /db_xref="CDD:180022" misc_feature 2180751..2181530 /locus_tag="Alide_2133" /note="SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/...; Region: SIRT4; cd01409" /db_xref="CDD:29377" misc_feature order(2180802..2180804,2180808..2180813,2180832..2180837, 2180976..2180978,2181030..2181035,2181039..2181041, 2181084..2181086,2181384..2181386,2181399..2181401, 2181465..2181470,2181525..2181527) /locus_tag="Alide_2133" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:29377" misc_feature order(2181036..2181038,2181084..2181086,2181300..2181302, 2181306..2181320,2181396..2181404) /locus_tag="Alide_2133" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29377" misc_feature order(2181108..2181110,2181117..2181119,2181261..2181263, 2181270..2181272) /locus_tag="Alide_2133" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:29377" gene 2181681..2184044 /locus_tag="Alide_2134" /db_xref="GeneID:10104188" CDS 2181681..2184044 /locus_tag="Alide_2134" /inference="protein motif:PFAM:PF01594" /note="KEGG: dia:Dtpsy_1696 phytochrome sensor protein; PFAM: protein of unknown function UPF0118; GAF domain protein; SMART: GAF domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126762.1" /db_xref="GI:319762825" /db_xref="InterPro:IPR002549" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR018130" /db_xref="GeneID:10104188" /translation="MNRGEPDPSLPPHRALALESLVPSLRLMVGLVIAALIIAGLYFG RTILVPLVLAFLLSFVLAPLVDRLRRLRVPDVAAVLAVVLATLLVLGAGATLVANEAR ALSAELPSYQSTIRGKLRNLRKQMRAPGMFDGAKRTLDIVQREVDAATPATPAAVQKV QVLPPPVSPAQQAMAALGSVSGPLADAALVLVFVVFILLDRVDLRDRLLRLWGRDLHR ATDAMDEAGGRITRYLTMQLLVNATYGIPLAAGLWFIGVPGALLWGVLAAVMRFVPYV GPLISSAFPVALAFAVDPGWSLVLWTIGLIAVLELISNNVVEPWLYGASTGLSVMSLI VSATFWTALWGPVGLVMSTPLTVCLLVVGRYLPQLAFLDVLLGSQPALDGPTRVYQRL LAGDADEAIELSAQQIDAAQGGVREFYAGTGLSVLRMAVGDHARAATPHHRLRVVEGM DELLDELAEQYPPPPAIAAARPGVACIGGKWEVDQLAARMLAHALQLQGCPAQAHSRG AQHEAGPALDGAQVVCLAWLAPDPAAVSASARHLCRRVKRRWPHVQVVLALLNGTEGL PDEGVLGQFGADAVVTSFEETLLCITRIQGASASNHYENAPVPEGDAARVAALHASGA LHSDALAALCQGAAQRAADIFDVPTAMISLVDAGTQHVRCVHGVHGGGAMPRALSLCG HVVAGGGPLVVPDLARDARFAGNPLLRERALRFYAGVPLRDGEGHVLGTLCLMDAEPR SFDEREARLLQAMADDLMASWRGERAPGQGGTDAPPPSATVGQPVPQ" misc_feature <2182329..2182766 /locus_tag="Alide_2134" /note="Domain of unknown function DUF20; Region: UPF0118; cl00465" /db_xref="CDD:186015" misc_feature <2183700..2183960 /locus_tag="Alide_2134" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" gene complement(2184026..2184595) /locus_tag="Alide_2135" /db_xref="GeneID:10104189" CDS complement(2184026..2184595) /locus_tag="Alide_2135" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_3219 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="gcn5-related n-acetyltransferase" /protein_id="YP_004126763.1" /db_xref="GI:319762826" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10104189" /translation="MIESNRLSTPRLRLRQWTAADREPFAALNADPEVMRHFPAPLTR TQSDAMAVRIEALIAERGWGFWAADSLEDGVPRFMGFVGLHTPAPDLPFSPCVEIGWR LARPFWGRGLATEAARLALRTGFEGLGLEEIVSFTAVGNQRSRAVMRRLGMRECPHEA FDHPALPAGHPLRAHCLYRLARADYWGTG" misc_feature complement(2184041..2184589) /locus_tag="Alide_2135" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" gene complement(2184592..2185221) /locus_tag="Alide_2136" /db_xref="GeneID:10104190" CDS complement(2184592..2185221) /locus_tag="Alide_2136" /inference="protein motif:TFAM:TIGR01091" /note="KEGG: dia:Dtpsy_1697 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="uracil phosphoribosyltransferase" /protein_id="YP_004126764.1" /db_xref="GI:319762827" /db_xref="GO:0004845" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR005765" /db_xref="GeneID:10104190" /translation="MSNVHVIDHPLVQHKLTLMRKKDASTNSFRRLLGELSTLMAYEV TRDMPLQDVRIETPLETMTARMIDGKKLVLVSILRAGNGFLDGMLNVVPGARVGHIGL YRDPATLQPVEYYFKMPSEMAERDVIVVDPMLATGNSAAAAVDRLKKLQPRSIKFVCL LAAPEGVATMQKAHPDVPIFTAAIDRELNDHGYILPGLGDAGDRIFGTK" misc_feature complement(2184595..2185221) /locus_tag="Alide_2136" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene complement(2185310..2186296) /locus_tag="Alide_2137" /db_xref="GeneID:10104191" CDS complement(2185310..2186296) /locus_tag="Alide_2137" /inference="protein motif:PFAM:PF00291" /note="PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dia:Dtpsy_1698 pyridoxal-5'-phosphate-dependent protein beta subunit" /codon_start=1 /transl_table=11 /product="pyridoxal-5'-phosphate-dependent protein beta subunit" /protein_id="YP_004126765.1" /db_xref="GI:319762828" /db_xref="GO:0003824" /db_xref="GO:0030170" /db_xref="InterPro:IPR001926" /db_xref="GeneID:10104191" /translation="MDLPRPPLPTYEDVAEAAHRLKGMAHHTPVLRSSTADALLGAEL FFKCENLQRMGAFKFRGAFNALVQFSDAQRARGVLAFSSGNHAQAIALSARLLQMPAV IVMPEDAPAAKIAATRGYGAEVVTYDRFTEDREAISQRLASERGMTLIPPFDHAHVIA GQGTVAKELFEEVPHLDYLFVPLGGGGLLSGSLLAAQRLAPQCRVIGVEPEAGNDAQQ SLRAGKIVRIGTPRTIADGAQSQALGSLTFPIIHAGVSDIVTATDAQLIEAMHFFAER MKIVVEPTGALGLAGARHGGVALRGRRVGVVISGGNVDMARYAQLLGTALAG" misc_feature complement(2185328..2186281) /locus_tag="Alide_2137" /note="serine/threonine dehydratase; Validated; Region: PRK07048" /db_xref="CDD:180808" misc_feature complement(2185445..2186266) /locus_tag="Alide_2137" /note="Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562" /db_xref="CDD:107205" misc_feature complement(order(2185457..2185465,2185475..2185477, 2185484..2185489,2185496..2185498,2185703..2185708, 2186144..2186149,2186240..2186245,2186252..2186254, 2186261..2186266)) /locus_tag="Alide_2137" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:107205" misc_feature complement(order(2185733..2185747,2186042..2186044, 2186123..2186125)) /locus_tag="Alide_2137" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107205" misc_feature complement(2186123..2186125) /locus_tag="Alide_2137" /note="catalytic residue [active]" /db_xref="CDD:107205" gene 2186547..2187251 /locus_tag="Alide_2138" /db_xref="GeneID:10104192" CDS 2186547..2187251 /locus_tag="Alide_2138" /inference="protein motif:PFAM:PF01709" /note="PFAM: protein of unknown function DUF28; KEGG: dia:Dtpsy_1700 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126766.1" /db_xref="GI:319762829" /db_xref="InterPro:IPR002876" /db_xref="GeneID:10104192" /translation="MGAQWKAKGKALVADAKGRLFGKLVKEIIVAARAGADPAGNSRL RLAIEAARKASMPKDTLERAVKKGSGVGGDAVNYERVIYEGFAPHQVPVMVECLTDNV NRTAPEMRVCFRKGQMSAVAWDFDHVGMIEGEPAQPGADAELAAIEAGAQDFEPGEED GQTLFLTDPTDLDAVAKALPEFGFKVLSAKLGYKARNPVSMASLPPEAQEEVQAFLAG IENNDDVQNVFVGLVD" misc_feature 2186547..2187242 /locus_tag="Alide_2138" /note="Domain of unknown function DUF28; Region: DUF28; cl00361" /db_xref="CDD:193787" gene 2187385..2187548 /locus_tag="Alide_2139" /pseudo /db_xref="GeneID:10104193" gene 2187915..2189339 /locus_tag="Alide_2140" /db_xref="GeneID:10104194" CDS 2187915..2189339 /locus_tag="Alide_2140" /inference="protein motif:TFAM:TIGR02745" /note="TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase accessory protein ccog" /protein_id="YP_004126767.1" /db_xref="GI:319762830" /db_xref="InterPro:IPR014116" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="GeneID:10104194" /translation="MPDPMHSNDRQPKKVIPIVPESVSLYEARKKIQPRSISGKFTSW RWIMVWVTQLVFYGLPWLEWGQRQTLLFDLGGLRFYLFGLVLYPQDFIYLTGLLVISA LALFLFTATAGRLWCGFACPQTVYTEIFLWLERRIEGERSARLRLDASGWTFEKLWKR TAKHGAWIFVSLWTGFTFVGYFVPIRQLGGELLALQGWQIFWTLFYGLATYGNAGFLR EQVCKYMCPYARFQSAMFDKDTLIVTYDAQRGEPRGARGKNGAPAGQGDCIDCTLCVQ VCPVGIDIRDGLQYECIGCGLCIDACNSVMDKVGLPLGLIRLATTNGMAGRWSSARML RRVVRPRVVMYTAVLVALSAAMIVSLAARTPLKVNVVRDRAALSRIVPGGKLENVYRL QVMNATEAPQRYRIGARGIDGIEVASEPEIAVGATESQWVAVRLRIPYGAAPEGAHPV YFEVESLGPALARVSEKASFLVPR" misc_feature 2188035..2189327 /locus_tag="Alide_2140" /note="cytochrome c oxidase accessory protein FixG; Region: ccoG_rdxA_fixG; TIGR02745" /db_xref="CDD:162996" misc_feature 2188980..2189333 /locus_tag="Alide_2140" /note="Ubp3 associated protein Bre5; Region: Bre5; pfam11614" /db_xref="CDD:152050" gene 2189366..2190784 /locus_tag="Alide_2141" /db_xref="GeneID:10104195" CDS 2189366..2190784 /locus_tag="Alide_2141" /inference="protein motif:PFAM:PF01654" /note="PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ara:Arad_12230 cytochrome bd-type quinol oxidase subunit 1" /codon_start=1 /transl_table=11 /product="cytochrome bd ubiquinol oxidase subunit i" /protein_id="YP_004126768.1" /db_xref="GI:319762831" /db_xref="GO:0016491" /db_xref="InterPro:IPR002585" /db_xref="GeneID:10104195" /translation="MLGFTALELARIQFGFTISFHIVFPAITIGLASYLAVLEGLWLW RKDPVYRDLYHFWSRIFAVNFAMGVVSGLVMAYQFGTNWSHYSSFAGSITGPLLAYEV LTAFFLEAGFLGVMLFGWNKVGSGLHFFSTVMVALGTLVSATWILASNSWMQTPQGFE IVDNVVVPVNWFEVIFNPSFSYRLAHMTMAAFISTALFVGASGAWHLLRGNDNPRVRT MLSMALWMLIAAAPLQIAIGDMHGLNTLEHQPAKLAAMEGHWENKPGEGAPLLLFGWP DMQAEATRYAVEVPRLGSLILTRSWDGQYRALKEFAPQDRPNVLLVFWSFRVMVGLGM LILLLALWGAWLRWRGRLYGSQAFLRFTAWMGPAGLIALLAGWFTTEVGRQPWIVYGV LRTQDAVSNHSAQVMGATLIVFIVAYFAVFGIGVRYMLKLVSQGPQAHEGASDAEAPG HRPARPLSAAPGAASRTHHQEG" misc_feature 2189390..2190676 /locus_tag="Alide_2141" /note="Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; cl00562" /db_xref="CDD:193871" gene 2190788..2191798 /locus_tag="Alide_2142" /db_xref="GeneID:10104196" CDS 2190788..2191798 /locus_tag="Alide_2142" /inference="protein motif:TFAM:TIGR00203" /note="KEGG: msl:Msil_2643 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II" /codon_start=1 /transl_table=11 /product="cytochrome d ubiquinol oxidase, subunit ii" /protein_id="YP_004126769.1" /db_xref="GI:319762832" /db_xref="InterPro:IPR003317" /db_xref="GeneID:10104196" /translation="MGIDLPVIWFVIIVFGLMMYVIMDGFDLGIGILFPFVRNRESRD VMVNTVAPVWDGNETWLVLGGASLMAAFPLAYAVVLSALYLPLLLMLLGLIWRGVAFE FRFKADESHRHFWDVAFTAGSYMATFFQGVALGAFLNGFEVHNGNYIGGAFDWLSPFS LFAGLGLVVAYALLGATWLIIKTEGSLHDRMVSLARPVTLALLVAIGIVSLWTPLTHP GIAQRWFDWPNIALFAPVPVLVLLTGYGLLRSLRGGDPSVTPFMLTLCLLFLGYTGLG ISVWPHIIPPDITIHEAAAPPQSMGFALVGALLIIPVILTYTAWSYYVFRGKVRQGEG YH" misc_feature 2190797..2191765 /locus_tag="Alide_2142" /note="Cytochrome oxidase subunit II; Region: Cyto_ox_2; pfam02322" /db_xref="CDD:190279" misc_feature 2190800..2191774 /locus_tag="Alide_2142" /note="cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219" /db_xref="CDD:187194" gene 2191798..2191944 /locus_tag="Alide_2143" /db_xref="GeneID:10104197" CDS 2191798..2191944 /locus_tag="Alide_2143" /inference="protein motif:PFAM:PF10617" /note="PFAM: Protein of unknown function DUF2474; KEGG: ara:Arad_12232 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126770.1" /db_xref="GI:319762833" /db_xref="InterPro:IPR018895" /db_xref="GeneID:10104197" /translation="MASSTSRRTVSWWRRVGWLVLIWAASVAALAVMALFFRVLMRLA GMSS" sig_peptide 2191798..2191893 /locus_tag="Alide_2143" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.920 at residue 32" gene complement(2192365..2193060) /locus_tag="Alide_2144" /db_xref="GeneID:10104198" CDS complement(2192365..2193060) /locus_tag="Alide_2144" /inference="protein motif:PFAM:PF04172" /note="PFAM: LrgB family protein; KEGG: dia:Dtpsy_2405 LrgB family protein" /codon_start=1 /transl_table=11 /product="lrgb family protein" /protein_id="YP_004126771.1" /db_xref="GI:319762834" /db_xref="InterPro:IPR007300" /db_xref="GeneID:10104198" /translation="MIAPSAFAIALAATLLTVAAYAVALWAYQRSGWGLLLPVLTGAA TVVALLVAMGVPYGVYREGTGLLSWLAGPATVALAFPLYRQWGRLRGIWWPVMGALLA GSVTAVVSAIGIAWLLDADWPLMMSLAPKSATMPVAMPVAESTGGAASLSAVAVALTG IAAAVLSGGLFGLLGVRSGMVRGFALGAAAHAIGTARAFQIGETAIGFAALAMSLNAI ATSLLVPLIVGLL" sig_peptide complement(2192992..2193060) /locus_tag="Alide_2144" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.821 at residue 23" misc_feature complement(2192368..2192904) /locus_tag="Alide_2144" /note="LrgB-like family; Region: LrgB; cl00596" /db_xref="CDD:186096" gene complement(2193057..2193458) /locus_tag="Alide_2145" /db_xref="GeneID:10104199" CDS complement(2193057..2193458) /locus_tag="Alide_2145" /inference="protein motif:PFAM:PF03788" /note="PFAM: LrgA family protein; KEGG: ctt:CtCNB1_3605 LrgA" /codon_start=1 /transl_table=11 /product="lrga family protein" /protein_id="YP_004126772.1" /db_xref="GI:319762835" /db_xref="InterPro:IPR005538" /db_xref="GeneID:10104199" /translation="MSRTELRIGAMASRTLQFSLGFVVLAALLSAGGRLVRWLHLPIP PAIVGMVLLLAVLACFGRLVAAVEAASTPLLKHMMLFFIPTVAGVMEQFQTLRTGWLP FVVACVAGAALTLAVTALTLQKLLKRQGTAG" misc_feature complement(<2193150..2193377) /locus_tag="Alide_2145" /note="LrgA family; Region: LrgA; cl00608" /db_xref="CDD:186103" gene 2193667..2195094 /locus_tag="Alide_2146" /db_xref="GeneID:10104200" CDS 2193667..2195094 /locus_tag="Alide_2146" /inference="protein motif:PFAM:PF00392" /note="KEGG: mpt:Mpe_A0752 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH" /codon_start=1 /transl_table=11 /product="regulatory protein gntr hth" /protein_id="YP_004126773.1" /db_xref="GI:319762836" /db_xref="GO:0003700" /db_xref="GO:0030170" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10104200" /translation="MKRYEQLAGDIAESIANGTLPPGARLPSVRQTTANRGVSPSTVF QAYYLLEARGLIQARPRSGYYVASGAAGVSEPEPSRPSGEQQDVEVSELVFQVLEHMR DRDLIPLGSAFPDPSLFPLDKLAMAQSKAMRGLDPWRTVEHLSPGNPELRRQITLRYL ATAFAIDSNELIVTNGAMEALNLSLEVTTRPGDLVAVESPTFYGALQALERLNLRAIE VPTHPRTGVDVPVLATILERHLVKACWFMPNFQNPLGSLMPDEAKQALVQLLAERQIP LIEDDVYGDLYFGTHKPRPAKAWDTQGLVLHCSSFSKTLAPGYRIGWVAAGRFAEAIA RRKLMSSLAAAVPSQEALSRYLQQGGYDRHLRRLRLTLLGNRAAALRSIAKHFPAGTR ASPPEGGYFLWIELPLGVDALALHWLALANHVSSAPGHLFSADHRFRRHLRINFGQAD SSELEMALKLLGKLAGSLVQRTPRS" misc_feature 2193667..2195019 /locus_tag="Alide_2146" /note="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:31361" misc_feature 2193670..2193867 /locus_tag="Alide_2146" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(2193670..2193672,2193676..2193678,2193745..2193747, 2193751..2193756,2193778..2193792,2193796..2193801, 2193808..2193810,2193838..2193843,2193847..2193858) /locus_tag="Alide_2146" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 2193985..2195007 /locus_tag="Alide_2146" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(2194192..2194200,2194270..2194272,2194420..2194422, 2194513..2194515,2194594..2194596,2194600..2194605, 2194624..2194626) /locus_tag="Alide_2146" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(2194201..2194203,2194300..2194302,2194492..2194494, 2194618..2194626,2194708..2194710,2194717..2194719) /locus_tag="Alide_2146" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 2194603..2194605 /locus_tag="Alide_2146" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(2195183..2195884) /locus_tag="Alide_2147" /db_xref="GeneID:10104201" CDS complement(2195183..2195884) /locus_tag="Alide_2147" /inference="protein motif:PFAM:PF02798" /note="PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_1701 glutathione S-transferase domain protein" /codon_start=1 /transl_table=11 /product="glutathione s-transferase domain protein" /protein_id="YP_004126774.1" /db_xref="GI:319762837" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="InterPro:IPR017933" /db_xref="GeneID:10104201" /translation="MIDLYYWTTPNGHKITLFLEEAGLPYRIHPVNIGRGEQFAPEFL RIAPNNRIPAIVDQAPADGGAPLSIFESGAILLYLADKTGRFIPQDLRGRNEALQWLF WQMGGLGPMAGQNHHFGQYAPEQIPYAIDRYVKETARLYGVLDKHLAGGRDYIAGEYS IADMACYPWIVPHERQRQDLTDFPHLQAWFERIRARPATERAYALAQTINTAPTVDEA AKKVLFGQDAGTMRR" misc_feature complement(2195264..2195884) /locus_tag="Alide_2147" /note="GSH-dependent disulfide bond oxidoreductase; Provisional; Region: PRK13972" /db_xref="CDD:172475" misc_feature complement(2195630..2195884) /locus_tag="Alide_2147" /note="GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen...; Region: GST_N_Ure2p_like; cd03048" /db_xref="CDD:48597" misc_feature complement(order(2195654..2195656,2195822..2195827, 2195834..2195836,2195843..2195845,2195852..2195857)) /locus_tag="Alide_2147" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48597" misc_feature complement(order(2195669..2195674,2195726..2195734, 2195852..2195854)) /locus_tag="Alide_2147" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48597" misc_feature complement(order(2195663..2195665,2195672..2195677, 2195681..2195683,2195732..2195734,2195738..2195743)) /locus_tag="Alide_2147" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48597" misc_feature complement(2195273..2195605) /locus_tag="Alide_2147" /note="GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen...; Region: GST_C_Ure2p_like; cd03178" /db_xref="CDD:48105" misc_feature complement(order(2195456..2195458,2195468..2195470, 2195486..2195491,2195501..2195503,2195507..2195509, 2195519..2195521,2195531..2195536,2195543..2195545, 2195567..2195572,2195576..2195581,2195585..2195590, 2195597..2195602)) /locus_tag="Alide_2147" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48105" misc_feature complement(order(2195282..2195284,2195291..2195293, 2195297..2195299,2195378..2195383,2195390..2195392, 2195570..2195575,2195591..2195593)) /locus_tag="Alide_2147" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48105" misc_feature complement(order(2195369..2195371,2195378..2195380, 2195537..2195539,2195543..2195548,2195555..2195560, 2195570..2195572)) /locus_tag="Alide_2147" /note="putative substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48105" gene complement(2195955..2197460) /locus_tag="Alide_2148" /db_xref="GeneID:10104202" CDS complement(2195955..2197460) /locus_tag="Alide_2148" /inference="protein motif:PFAM:PF05872" /note="PFAM: protein of unknown function DUF853 NPT hydrolase; KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126775.1" /db_xref="GI:319762838" /db_xref="InterPro:IPR008571" /db_xref="GeneID:10104202" /translation="MAEPLLIAQRDSTQCHLLPGLANRHGLITGATGTGKTVTLQTLA EQFSRIGVPVFMADVKGDLTGISQKGSIGDKLAKTLADRGLATPEPVACPTTLWDVFG EQGHPVRATVSDMGPLLLGRMLNLNETQLGVLNLVFKIADDNGLLLLDLKDLRAMLQH VGDNAKDFTTEYGNISSASVGAIQRGLLQIETQGGDRFFGEPMLNIQDFMQTVDGKGV VNILAADKLMNSPRLYATFLLWMLSDLFEQLPEIGDPEQPKLVFFFDEAHLLFNEAPK VLVERIELVVRLVRSKGVGVYFVTQNPLDIPDSVLGQLGNRVQHALRAFTPRDQKAVK ATATTMRPKAGLDIEAAITELAVGEALVSFLDPKGRPSETERVYVLPPGSQIGPITDG QRRALIAGSLVAGAYDQAVDRESAYEKLRGRADAAATNAAAAQGNAGAQNGGLMDGLN DVLFGSTGPRGGKKDGLVQTMAKSAVRTMGTSLGREILRGVLGGILGGRKR" misc_feature complement(2196015..2197454) /locus_tag="Alide_2148" /note="Bacterial protein of unknown function (DUF853); Region: DUF853; pfam05872" /db_xref="CDD:114590" misc_feature complement(<2197278..2197388) /locus_tag="Alide_2148" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 2197533..2198252 /locus_tag="Alide_2149" /db_xref="GeneID:10104203" CDS 2197533..2198252 /locus_tag="Alide_2149" /inference="protein motif:PFAM:PF01709" /note="PFAM: protein of unknown function DUF28; KEGG: dia:Dtpsy_1703 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126776.1" /db_xref="GI:319762839" /db_xref="InterPro:IPR002876" /db_xref="GeneID:10104203" /translation="MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARQGGGDPA ANPRLRLAIDKAKAANMPADRIKYNIDKASGTLEGINYEEIRYEGYGIGGAAIIVDTM TDNRVRTVAEVRHAFSKYGGNMGTEGSVAFQFKHAGQLIFAPGTSEDKVMEVALEAGA EDVVTDDDGAIEVLTAPGDFEAVKNALEARGLKAEVAEVTMRPENTVALEGDDAARMQ KLLDVIEDLDDVQEVYHNAEL" misc_feature 2197533..2198249 /locus_tag="Alide_2149" /note="Domain of unknown function DUF28; Region: DUF28; cl00361" /db_xref="CDD:193787" gene 2198249..2199535 /locus_tag="Alide_2150" /db_xref="GeneID:10104204" CDS 2198249..2199535 /locus_tag="Alide_2150" /EC_number="6.3.4.13" /inference="protein motif:TFAM:TIGR00877" /note="TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain" /codon_start=1 /transl_table=11 /product="phosphoribosylamine/glycine ligase" /protein_id="YP_004126777.1" /db_xref="GI:319762840" /db_xref="GO:0004637" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR020560" /db_xref="InterPro:IPR020561" /db_xref="InterPro:IPR020562" /db_xref="GeneID:10104204" /translation="MKILVIGGGGREHALAWKLSQSPRTTKVYVAPGNGGTALSPRYE NLPITDVVALREWAQANKIGLTVVGPEAPLAAGVVDEFRAHGLRIFGPTKAAAQLESS KAFSKAFMRRHGIPTADYDTFTDPAAAHAFVDRLGAPIVVKADGLAAGKGVVVAMTLQ EAHDAVDFMLVDNKYGVTHNEGGARVVIEEFLEGEEASFIVLCDGKNVLALATSQDHK RLKDGDQGPNTGGMGAYSPAPVVTADVHARAMREVILPTVRGMEKDGIPYTGFLYAGL MIDATGHPKTLEFNCRMGDPETQPILMRLKSDLVEVLGAAVDGRLDQVELQWDRRTAL GVVMAAHGYPDSPRKGDAITGLPQDEDDAMVFHAGTQLGDDGVVRTSGGRVLCVTALA DNVKQAQQRVYDVARGIYFDGAQYRRDIGHRAVKGG" misc_feature 2198249..2199529 /locus_tag="Alide_2150" /note="phosphoribosylamine--glycine ligase; Provisional; Region: PRK00885" /db_xref="CDD:179154" misc_feature 2198252..2198548 /locus_tag="Alide_2150" /note="Phosphoribosylglycinamide synthetase, N domain; Region: GARS_N; pfam02844" /db_xref="CDD:190449" misc_feature 2198549..2199142 /locus_tag="Alide_2150" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 2199242..2199520 /locus_tag="Alide_2150" /note="Phosphoribosylglycinamide synthetase, C domain; Region: GARS_C; pfam02843" /db_xref="CDD:190448" gene 2199535..2200461 /locus_tag="Alide_2151" /db_xref="GeneID:10104205" CDS 2199535..2200461 /locus_tag="Alide_2151" /EC_number="1.3.3.3" /inference="protein motif:PRIAM:1.3.3.3" /note="KEGG: dia:Dtpsy_1705 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase" /codon_start=1 /transl_table=11 /product="coproporphyrinogen oxidase" /protein_id="YP_004126778.1" /db_xref="GI:319762841" /db_xref="InterPro:IPR001260" /db_xref="InterPro:IPR018375" /db_xref="GeneID:10104205" /translation="MAQALNPAATAARVRGYLEGLQARITGALEEVEGEGGARFRSDA WRREAGSPLQGDGITRILEGGRVFERAGCGFSHVSGPQLPPSATQHRPELAGAPFEAM GVSLVFHPRNPYVPTVHMNVRMIAAGDACWFGGGMDLTPYYGFEEDAVHFHRACRDAL APFGEGLYPRFKTWCDEYFFLKHRGEQRGVGGIFFDDFSELGFEQSLAMTQSVGDAFL GAYLPIVQRRMDMPWGERERDFQLYRRGRYVEFNLVWDRGTHFGLQSGGRTESILLSM PPLAAWSYQRESEPGSPEAELTARFLQRRDWV" misc_feature 2199553..2200458 /locus_tag="Alide_2151" /note="Coproporphyrinogen III oxidase; Region: Coprogen_oxidas; cl00433" /db_xref="CDD:193817" gene 2200545..2201210 /locus_tag="Alide_2152" /db_xref="GeneID:10104206" CDS 2200545..2201210 /locus_tag="Alide_2152" /inference="protein motif:TFAM:TIGR00090" /note="KEGG: dia:Dtpsy_1706 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein" /codon_start=1 /transl_table=11 /product="iojap-like protein" /protein_id="YP_004126779.1" /db_xref="GI:319762842" /db_xref="InterPro:IPR004394" /db_xref="GeneID:10104206" /translation="MTTTSKSESAAKKDVTKLQRAIVDGLEDVKAQDIQVFNTEHLSP LFERVIVATGGSNRQTKALASSVRDAVREAGFPKPRTEGEDNGEWIIVDCGQAVAHIM QPAIRQYYRLEEIWGEKPVRMKLGAAKPRKITASEDASAAPAKKAAAKKAPAKTAPAK AAAKAPAAKKAAPAAKKPAAKKAAVKTVVVNKPVAKKATAKAPAKKAAAKAPARKAPA RKG" misc_feature 2200596..2200892 /locus_tag="Alide_2152" /note="Domain of unknown function DUF143; Region: DUF143; cl00519" /db_xref="CDD:193850" gene 2201210..2201677 /locus_tag="Alide_2153" /db_xref="GeneID:10104207" CDS 2201210..2201677 /locus_tag="Alide_2153" /inference="protein motif:PFAM:PF02590" /note="PFAM: protein of unknown function DUF163; KEGG: aav:Aave_3199 rRNA large subunit methyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126780.1" /db_xref="GI:319762843" /db_xref="GO:0008168" /db_xref="InterPro:IPR003742" /db_xref="InterPro:IPR016051" /db_xref="GeneID:10104207" /translation="MKLLIVAVGQRVPDWAASAYEDYAKRFPPELKVELKAVKTEPRG SKTLETLYAAERERIEAAIPRGARVVALDERGTSLTTKALAERLKGWQLAGDDVALVI GGPDGLDPAFRQAAHERIRLSDLTLPHAMVRVLLIEQLYRAWSVNAGHPYHRE" misc_feature 2201210..2201674 /locus_tag="Alide_2153" /note="Predicted SPOUT methyltransferase; Region: SPOUT_MTase; cl00679" /db_xref="CDD:186141" gene 2201745..2202350 /locus_tag="Alide_2154" /db_xref="GeneID:10104208" CDS 2201745..2202350 /locus_tag="Alide_2154" /inference="protein motif:TFAM:TIGR00172" /note="KEGG: dia:Dtpsy_1708 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein" /codon_start=1 /transl_table=11 /product="maf protein" /protein_id="YP_004126781.1" /db_xref="GI:319762844" /db_xref="InterPro:IPR003697" /db_xref="GeneID:10104208" /translation="MADFIYLASQSPRRRQLLEQLGVRHELLLPGPDEDAEGLEAVQP GESPAVYVQRVTALKLDAAVLRHARRGLAPAPILCSDTTVALDGRIYGKPEGAQDAAR MLSELAGREHQVLTAVALQAGARRLAALSVSRVRFAAMTPAQIAAYVASGEPIGKAGA YAIQGPAAQYVENMDGSYTGIMGLPLFETAGLLREAGVLRD" misc_feature 2201757..2202323 /locus_tag="Alide_2154" /note="Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555" /db_xref="CDD:29954" misc_feature order(2201769..2201771,2201784..2201786,2201844..2201846, 2201919..2201921,2201985..2201987,2202021..2202023) /locus_tag="Alide_2154" /note="active site" /db_xref="CDD:29954" misc_feature order(2201901..2201903,2202120..2202134) /locus_tag="Alide_2154" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29954" gene complement(2202356..2203075) /locus_tag="Alide_2155" /db_xref="GeneID:10104209" CDS complement(2202356..2203075) /locus_tag="Alide_2155" /inference="protein motif:PFAM:PF00027" /note="KEGG: dia:Dtpsy_1709 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_004126782.1" /db_xref="GI:319762845" /db_xref="GO:0003700" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:10104209" /translation="MDIQQFDIPRYLAALPLFQEMTPAELQRLATGCRLRRYARGDTV FRVGMPCEEFHVTVTGQIKLFAISPTGQEKVIELAGPGVSFAEALMFTDKPYIINAQA LADALVLSVGKAAVVREIEDDPRFAMHMLAGISRRLHGLVHDVQAYSLHSGMQRVIGY LLHSLPEDGSSSGHADCREAVALNVSLPVSKATIASRLSITPEYFSRVLHELEEAGLI RIDKRDIHIPNAARLASHTLQ" misc_feature complement(2202389..2203045) /locus_tag="Alide_2155" /note="cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:31008" misc_feature complement(2202683..2203027) /locus_tag="Alide_2155" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature complement(order(2202782..2202790,2202815..2202820)) /locus_tag="Alide_2155" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature complement(order(2202698..2202706,2202716..2202724)) /locus_tag="Alide_2155" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature complement(2202395..2202532) /locus_tag="Alide_2155" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(2203282..2204877) /locus_tag="Alide_2156" /db_xref="GeneID:10104210" CDS complement(2203282..2204877) /locus_tag="Alide_2156" /EC_number="1.7.99.1" /inference="protein motif:PRIAM:1.7.99.1" /note="KEGG: dia:Dtpsy_1710 cytochrome d1 heme region; PFAM: cytochrome c class I" /codon_start=1 /transl_table=11 /product="hydroxylamine reductase" /protein_id="YP_004126783.1" /db_xref="GI:319762846" /db_xref="InterPro:IPR003088" /db_xref="InterPro:IPR009056" /db_xref="GeneID:10104210" /translation="MPDLPCPALRAAAILALALAGPLHTAARAQAPDAPALYQQHCAS CHGAQRTGLMGPALLPESLERTRPAEVLRVIREGRQATQMAGYAGQLSGAEIQALADW VRTPVVPAPRWGEADIRASRIATPLPADEPVKPKWDADPMNLFVVVEGGDHHVSLLDG DRFTVITRFASRYALHGGPKFTPDGRYVFFGSRDGWITKYDLWRLQVVAEVRAGLNMR NVAVSSDGRWVMAANYLPHSLALFDADLNLVKTYEAATLDGKASSRVSAVYDAAPRNS FVVALKDIPELWEISYDKQAAPIYDGLVHDYKMGEAIAKPGYLGVRRTPLSEPLDDFF FDQGYRHVLGATRPQAGKSEAASAQVVNLDVRRKIADLPIAGMPHLGSGITFAWRGTT VLASPNLGGTGVDVIDMRSWKNLRTIPTPGAGFFMRSHENTPYAWTDSMMSKDAKDRL TIIDKRTLEPVAEVREPGKTLAHIEFTRDGRYALASVWEMDGALIVYDAATFREVKRL PMAKPVGKYNVWNKITRSEGTSH" misc_feature complement(2204563..2204769) /locus_tag="Alide_2156" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature complement(2203312..2204466) /locus_tag="Alide_2156" /note="Cytochrome D1 heme domain; Region: Cytochrom_D1; pfam02239" /db_xref="CDD:190255" misc_feature complement(2204182..>2204460) /locus_tag="Alide_2156" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues...; Region: WD40; cl02567" /db_xref="CDD:194362" gene complement(2204870..2206090) /locus_tag="Alide_2157" /db_xref="GeneID:10104211" CDS complement(2204870..2206090) /locus_tag="Alide_2157" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: dia:Dtpsy_1711 radical SAM domain protein" /codon_start=1 /transl_table=11 /product="radical sam domain protein" /protein_id="YP_004126784.1" /db_xref="GI:319762847" /db_xref="GO:0003824" /db_xref="GO:0051536" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR017200" /db_xref="GeneID:10104211" /translation="MFRISQYMRELAQAQATGEYPITKDRKARGPVVIWNLIRRCNLT CKHCYALSADHDYAGELSLSEVFTVMDDLKAFGVPALILSGGEPLLRADIFEISARAR QMGFYTGLSTNGTLIDAPMARRIADAGFDYVGISLDGLKATHDKFRRLEGAFDRSLAA IGHLDEVGVKVGLRYTMTAMNGHDLPALLDLMQEVGAHKFYFSHLNYAGRGNIHRDKD ARHQATRAAMDMLFDRAWAAAQAGSMDDYVSGNNDADGPYLLQWVRQHLPQWEEPLRQ RLVAWGGNASGQQIANIDNLGHVHPDTMWWHHDLGCVRDRPFSEIWNDVSDPLMAGLK QRPRPVQGRCGGCRHLAICNGNTRVRAQQLTGDFWFEDPGCYLTDAEVGAASTPFEPV AKRRTGRTIEIAHA" misc_feature complement(2204942..2206003) /locus_tag="Alide_2157" /note="heme d1 biosynthesis radical SAM protein NirJ; Region: rSAM_NirJ; TIGR04051" /db_xref="CDD:188566" misc_feature complement(2205485..2205988) /locus_tag="Alide_2157" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(2205563..2205565,2205683..2205685, 2205752..2205760,2205830..2205835,2205839..2205841, 2205944..2205952,2205956..2205958,2205962..2205964, 2205968..2205970)) /locus_tag="Alide_2157" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature complement(2204966..>2205163) /locus_tag="Alide_2157" /note="radical SAM additional 4Fe4S-binding domain; Region: rSAM_more_4Fe4S; TIGR04085" /db_xref="CDD:188600" gene complement(2206093..2206572) /locus_tag="Alide_2158" /db_xref="GeneID:10104212" CDS complement(2206093..2206572) /locus_tag="Alide_2158" /inference="similar to AA sequence:KEGG:Ajs_1907" /note="KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="asnc family transcriptional regulator" /protein_id="YP_004126785.1" /db_xref="GI:319762848" /db_xref="GeneID:10104212" /translation="MALDAFDRALIAATQGGLPLVARPYEAVGAMLGVPGEQVRERLA QMLAQGLIRRIGAVPNHYRLGYTANGMSVWDVADERVSELGPLVAQLPGVSHCYRRPR HLPGWPYNLFAMLHGTSREAVEHQAQDIVALLGDACRGHDILYSTAILKKTGLRLKD" misc_feature complement(2206102..2206572) /locus_tag="Alide_2158" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(2206276..2206566) /locus_tag="Alide_2158" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(2206553..2208055) /locus_tag="Alide_2159" /db_xref="GeneID:10104213" CDS complement(2206553..2208055) /locus_tag="Alide_2159" /inference="similar to AA sequence:KEGG:Dtpsy_1714" /note="KEGG: dia:Dtpsy_1714 transcriptional regulator, AsnC family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126786.1" /db_xref="GI:319762849" /db_xref="GeneID:10104213" /translation="MHTAQHHLDLALLNPWQRGFPLCREPFAVIGERLCMDAEDVLSR YQRLQRQGSLSRIGAVFAPGAGGASLLAAMAVPPERLEAVAAIVSSHAGVNHNYEREH TTNLWFVATGPDAAQVEELLRGIEMDTGLPVQRLPMLRPYRIDTGFDLRASQSPSSGA THWAQTPLQAHDQPLAALAERGLPLVQRPYDHWAEQLQQPVEAVLHTLQRWLDERTVS RFGVVVRHHELGFTANAMTVFDVPKGEVDACGEALARVPGVTLAYQRARTRDWPYNLY CMVHGRDRDSVRATVARAVAQAGLADKPQAMLFSLRRFKQTGARRFTPPAMPRTLPIH QKERCMLTPEDARLIDHLHGGFPLVDRPFAAVGEQLGWSEERVIERLHQLLAQGVLTR FGPLFQIERAGGQFVLAALAVPEERFDVVNAVVNSFPEVAHNYRRTHRLNMWFVVAAE SPALAQDAIARIQDAVGLEVFAFPKEEEYFVELRLPALPQTGERHGAGCL" misc_feature complement(2207687..2208034) /locus_tag="Alide_2159" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(2206670..2207038) /locus_tag="Alide_2159" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" gene complement(2208059..2209267) /locus_tag="Alide_2160" /db_xref="GeneID:10104214" CDS complement(2208059..2209267) /locus_tag="Alide_2160" /inference="similar to AA sequence:KEGG:Ajs_1910" /note="KEGG: ajs:Ajs_1910 cytochrome d1, heme region" /codon_start=1 /transl_table=11 /product="cytochrome d1, heme region protein" /protein_id="YP_004126787.1" /db_xref="GI:319762850" /db_xref="GeneID:10104214" /translation="MKRRSLLSFAAAAPLLAGGCAATSASSATSKAPALLGTGDLGVV IERAQGALTLVNTSRREAMGRVEGLGDLSHASVVFSRDERFAYVFGRDGALTRVDILE QRITHRVMQAGNSIGGAISADGSLVVAQNYTPGGIKVFDAATLELLSDIPALMPNGER SRVVGLADLPQRRFIYSLFDAEAICIADCSNPRKPRVTTLAGIGRQPYDALLSPNGRH YIAGLFGEDGLAMVDLWDATPRARRILAGYGRGEKPLPVYKMPHLRGWAMAGGRAYLP AIGRHEVLVVDTATWAEVGRIPVAGQPVFVMARPDGRQVWVNFSVPDYNRVQVIDTPS GQVIDTIAPGKAVLHMEFTPRGESVWISCRDDDRVQVYDTHTRQLQASLAVDAPSGIF FTARAQRMGF" sig_peptide complement(2209184..2209267) /locus_tag="Alide_2160" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.546 at residue 28" misc_feature complement(2208077..2209159) /locus_tag="Alide_2160" /note="Cytochrome D1 heme domain; Region: Cytochrom_D1; pfam02239" /db_xref="CDD:190255" gene complement(2209264..2209617) /locus_tag="Alide_2161" /db_xref="GeneID:10104215" CDS complement(2209264..2209617) /locus_tag="Alide_2161" /inference="similar to AA sequence:KEGG:Dtpsy_1716" /note="KEGG: dia:Dtpsy_1716 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126788.1" /db_xref="GI:319762851" /db_xref="InterPro:IPR009056" /db_xref="GeneID:10104215" /translation="MARNAFLSLTLALAAAAAGAQTLAAAPAPERAAQLVRMVRQDCG SCHGMRLTGGLGPALTRQALAAKPPEYLAAVIIHGIPGTPMPPWSALLSGTEALWIAQ QLASGFPEEMRSQAP" sig_peptide complement(2209540..2209617) /locus_tag="Alide_2161" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.599 at residue 26" misc_feature complement(2209321..>2209500) /locus_tag="Alide_2161" /note="putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional; Region: PRK14486" /db_xref="CDD:184704" gene complement(2209640..2211364) /locus_tag="Alide_2162" /db_xref="GeneID:10104216" CDS complement(2209640..2211364) /locus_tag="Alide_2162" /EC_number="1.7.99.1" /inference="protein motif:PRIAM:1.7.99.1" /note="KEGG: dia:Dtpsy_1717 hydroxylamine reductase" /codon_start=1 /transl_table=11 /product="hydroxylamine reductase" /protein_id="YP_004126789.1" /db_xref="GI:319762852" /db_xref="InterPro:IPR009056" /db_xref="GeneID:10104216" /translation="MTAKRIARLVALAAATLVSATAMAQGSKPVSEAEKNYQAGSSPL VNEPMYQSMNPKAPPMTQAEFDLARKIYFERCAGCHGVLRKGATGKPLTPDITLAKGT DYLKVFIAYGSPAGMPNWLTSGEMDEKQVDLMARYIQQDPPTPPEWSLADAKNTWKVI IPPEKRPTKKMNKYNIDNLFSTTLRDTGEVALIDGDTKEIINIVKTGYAVHISRMSAS GRYLFVIGRDAKINMIDLWMEKPDNVAEIRVGLEARSVDTSKFKGYEDKLAIAGSYWP PQFTIMDGNTLEPLKIVSTRGMVVGTQEYHPEPRVASIVASHYKPEFVVNVKETGKTM MVDYSNLNALKMTEIGSAPFLHDGGWDSSKRYFMVAANNSNKVAAIDAKDGKLAGLTE VGKIPHPGRGANFIHPKYGPVWATGHLGDETISLIGTDPKKNKQYAFKEVAKLTGPGG GALFIKTHPKSKNLWSDAPLNPDPKVSQAVVVFDINNLDKGYKTLPIAEWADLPNDGG AKRVTQPEYNKAGDEVWFAVWSAKDKASALVVVDDKTLKLKKVIKDPRLITPTGHFNV YNTQHDVY" sig_peptide complement(2211290..2211364) /locus_tag="Alide_2162" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 25" misc_feature complement(2210945..2211163) /locus_tag="Alide_2162" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature complement(2209658..2210848) /locus_tag="Alide_2162" /note="Cytochrome D1 heme domain; Region: Cytochrom_D1; pfam02239" /db_xref="CDD:190255" gene 2211576..2212403 /locus_tag="Alide_2163" /db_xref="GeneID:10104217" CDS 2211576..2212403 /locus_tag="Alide_2163" /inference="protein motif:TFAM:TIGR01469" /note="KEGG: dia:Dtpsy_1718 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase" /codon_start=1 /transl_table=11 /product="uroporphyrin-iii c-methyltransferase" /protein_id="YP_004126790.1" /db_xref="GI:319762853" /db_xref="GO:0008168" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR003043" /db_xref="InterPro:IPR006366" /db_xref="InterPro:IPR020592" /db_xref="GeneID:10104217" /translation="MSFIEDARWFTAAPAAGAPGMPTPPGRVTLVGAGPGDPELLTLR AVKALRGARLVLYDHLVGKEVLRYVAEDADLIYVGKESSHHTLPQESIIDLMVRLARS GRNLVRLKGGDGFIFGRGGEEAQALAEAGIAFDVVPGITAAQGAGACAGIPLTHRDHA ATLVFATGHLRGDNEVALDWEALARPRQTVVIYMGMGTLPVICEQLVRHGLPASMPAA LVEQASLPGQRCITGTLQELPALAQQHRVRPPALIVVGEVVALQPQLMRGMQAATML" misc_feature 2211654..2212370 /locus_tag="Alide_2163" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene 2212485..2213972 /locus_tag="Alide_2164" /db_xref="GeneID:10104218" CDS 2212485..2213972 /locus_tag="Alide_2164" /inference="protein motif:TFAM:TIGR00757" /note="KEGG: ajs:Ajs_1914 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein" /codon_start=1 /transl_table=11 /product="ribonuclease, rne/rng family" /protein_id="YP_004126791.1" /db_xref="GI:319762854" /db_xref="GO:0004540" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR004659" /db_xref="InterPro:IPR019307" /db_xref="GeneID:10104218" /translation="MQQDILINWSPQETRVAVVENGAVQELHVERALERGLVGNVYLG KVSRVLPGMQSAFIDIGLERAAFLHVADVWQRQEGGEAPMFARKNEPPVPIEKQVFEG QSLMVQVIKDPIGSKGARLSTQISIAGRLLVFLPQDDHIGISQKIPQEERDALRARLQ ALAGDKSTGGGGGFILRTNGEDASDAELAEDIAYLRKTWAGIRQAALSRPPTSLLYQD LNLLQRVLRDLVGEETQSIRLDSREQFAALQKFGRDFMPAAVAKLQLYKGERPIFDLY AIDEEIARALGRRVDLKSGGYLIVDQTEALTTIDVNTGGYVGARNFDDTIFKTNLEAA GAIARQLRLRNLGGIVIADFIDMLREDHQAAVLAEFKKQLARDRVKTMVGGFSQLGLV EMTRKRTRESLAHMLCEPCPTCHGVGEVKTARTVCYDILREVLREARQFNPREFRVIA SPKVVELFLDEESQHLAGLSDFIGKPISLQAETAVGPEEYDIVLL" misc_feature 2212485..2213969 /locus_tag="Alide_2164" /note="ribonuclease G; Provisional; Region: PRK11712" /db_xref="CDD:183285" misc_feature 2212584..2212874 /locus_tag="Alide_2164" /note="S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453" /db_xref="CDD:88419" misc_feature order(2212611..2212613,2212782..2212784,2212794..2212796) /locus_tag="Alide_2164" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:88419" misc_feature order(2212683..2212685,2212815..2212817,2212824..2212826, 2212833..2212838,2212866..2212868) /locus_tag="Alide_2164" /note="oligonucleotide binding site [chemical binding]; other site" /db_xref="CDD:88419" gene 2214148..2215833 /locus_tag="Alide_2165" /db_xref="GeneID:10104219" CDS 2214148..2215833 /locus_tag="Alide_2165" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pca:Pcar_0095 sensory transduction system, regulatory protein; SMART: GGDEF domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004126792.1" /db_xref="GI:319762855" /db_xref="InterPro:IPR000160" /db_xref="GeneID:10104219" /translation="MPCAGALAAQPQVLRAAVLTSLAGTQEVTLPHVLGPADFAPEGS RVRYRLDFELPAAAVAAAEDEPLGVYVPKMSLAGRLMLNGERVGACDLGALEQLRCLH RPYLFVLPASQWRAGANTLEFEIFATSRQMNGLSSVSIGPARLLGDGPYGWRRFVQVT VANGLAWAAFCMGGIALCVSLALRGECLYGWFGATALAIALSNLNYTLTAPPVPPQFF SWFVFSVNQAMVLLLMLTVLSFFRRDWPWARRGLIAFMLLGPAVVWLSGSNRTVVALL YVPFVLFGPLLAVAAIRWAWRSHRKADLWMALSFFSVVAVSFIDWFRLTGRSAFEGTY FVTYVIPSTIVVMGGTLASQLATALKTARELTATLDKRVAERTEALTLANQRLEELST TDSLTGLANRRHFDDILAKEWQRARRLRHPLALLMIDVDHFKQFNDTYGHLAGDDCLR QVAQILKQRLLRGSDTAARFGGEEFAVITSMDLEGALHIAELIRQDVENHPVSVDGVD AVHVSVSIGLSALVPDGSRSPPQLISLADEALYRAKRAGRNCVRAAAAQCVAA" misc_feature 2214655..2215170 /locus_tag="Alide_2165" /note="7TM diverse intracellular signalling; Region: 7TMR-DISM_7TM; pfam07695" /db_xref="CDD:148994" misc_feature 2215321..2215794 /locus_tag="Alide_2165" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(2215432..2215434,2215564..2215566) /locus_tag="Alide_2165" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(2215447..2215449,2215456..2215461,2215471..2215473, 2215483..2215485,2215552..2215554,2215558..2215569) /locus_tag="Alide_2165" /note="active site" /db_xref="CDD:143635" misc_feature order(2215540..2215542,2215621..2215623) /locus_tag="Alide_2165" /note="I-site; other site" /db_xref="CDD:143635" gene complement(2215767..2216564) /locus_tag="Alide_2166" /pseudo /db_xref="GeneID:10104220" gene complement(2216609..2217760) /locus_tag="Alide_2167" /db_xref="GeneID:10104221" CDS complement(2216609..2217760) /locus_tag="Alide_2167" /inference="protein motif:PFAM:PF00155" /note="PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_1720 aminotransferase" /codon_start=1 /transl_table=11 /product="aminotransferase class i and ii" /protein_id="YP_004126793.1" /db_xref="GI:319762856" /db_xref="GO:0003723" /db_xref="GO:0030170" /db_xref="InterPro:IPR001176" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10104221" /translation="MTTPTFPSRLPNVGTTIFTVMSALAAEHKAVNLGQGFPDFACDP ALVDAVTRAMQTGHNQYPPMVGVPALREAVASKIETLHARRYCPNSEITITAGATQAI LTAILACVQPGDEVIVLEPCYDSYVPNIELAGGVVVRVPLTPGSFRPDFARISAAITP RTRLIIANTPHNPSATVWTAEDMRALEELLAPTGILLISDEVYEHMVFDGAEHQSAAR FPGLADRAFIVSSFGKTFHVTGWKIGTVAAPAPLTAEFRKVHQFNVFTVNTPMQYGLA DYLGNPAPYLQLPAFYQAKRDLFRQGLEGSRLRLLPSTGSYFQCVDISAVSDLGEADF CQWLTREIGVAAIPLSAFYGDGFDQRVVRFCFAKKDETLREALTRLRRL" misc_feature complement(2216651..2217757) /locus_tag="Alide_2167" /note="methionine aminotransferase; Validated; Region: PRK09082" /db_xref="CDD:181642" misc_feature complement(2216651..2217670) /locus_tag="Alide_2167" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(2217035..2217037,2217059..2217064, 2217068..2217070,2217152..2217154,2217245..2217247, 2217392..2217394,2217464..2217472)) /locus_tag="Alide_2167" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(2216939..2216941,2216948..2216950, 2217035..2217043,2217173..2217175,2217362..2217364, 2217461..2217463)) /locus_tag="Alide_2167" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(2217059..2217061) /locus_tag="Alide_2167" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(2217902..2218843) /locus_tag="Alide_2168" /db_xref="GeneID:10104222" CDS complement(2217902..2218843) /locus_tag="Alide_2168" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1721 transcriptional regulator CysB-like protein" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126794.1" /db_xref="GI:319762857" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10104222" /translation="MNLHQFRFVQEAARRNLNLTEAAKALHTSQPGVSKAIIELEDEL GVDIFARHGKRLKRVTEPGQHVLRSIELIMREVGNLKRIGEQYSAQDSGTLAIATTHT QARYVLPVPVAKLREAYPKVNISLHQATPHEVARMVIDEVAEIGMATESLADYPDLVT LPCYEWQHVLVLPPSHPLAQKERVGLDDIAHEALITYHPSFTGRGKIDQAFATRKLQP RIVLEAIDSDVIKTYVRLGLGIGIVAEMAVRDDPLGDLVVRPMGHLFGQSVARVAFKR GAYLRNFVYKFAELLSDRLSRDLIARAMTGHVHDYEL" misc_feature complement(2217917..2218843) /locus_tag="Alide_2168" /note="transcriptional regulator CysB-like protein; Reviewed; Region: PRK12682" /db_xref="CDD:183679" misc_feature complement(2218652..2218837) /locus_tag="Alide_2168" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2217971..2218564) /locus_tag="Alide_2168" /note="The C-terminal substrate domain of LysR-type transcriptional regulators CysB-like contains type 2 periplasmic binding fold; Region: PBP2_CysB_like; cd08413" /db_xref="CDD:176105" misc_feature complement(order(2218238..2218240,2218346..2218348, 2218394..2218402,2218535..2218540,2218544..2218546)) /locus_tag="Alide_2168" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176105" misc_feature complement(order(2217989..2217994,2217998..2218009, 2218136..2218138,2218145..2218150,2218157..2218162, 2218166..2218183,2218445..2218447,2218457..2218477, 2218496..2218498,2218508..2218510,2218517..2218522, 2218529..2218534,2218541..2218543)) /locus_tag="Alide_2168" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176105" gene complement(2218887..2219267) /locus_tag="Alide_2169" /db_xref="GeneID:10104223" CDS complement(2218887..2219267) /locus_tag="Alide_2169" /inference="protein motif:PFAM:PF01903" /note="PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: dia:Dtpsy_1722 cobalamin (vitamin B12) biosynthesis CbiX protein" /codon_start=1 /transl_table=11 /product="cobalamin (vitamin b12) biosynthesis cbix protein" /protein_id="YP_004126795.1" /db_xref="GI:319762858" /db_xref="GO:0016829" /db_xref="GO:0046872" /db_xref="InterPro:IPR002762" /db_xref="GeneID:10104223" /translation="MQQARAAIILLAHGSRDPLWRQPIEAVAAHIRASQPLLAVRCAY MELCEPGLPAALAELAAQGAARISIVPLFLGAGRHVRDDLPRQVQALAQAHPHIDLRL QPPIGEDDRVMALMAEIAASTAIY" misc_feature complement(2218947..2219249) /locus_tag="Alide_2169" /note="Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a...; Region: CbiX_SirB_N; cd03416" /db_xref="CDD:48643" misc_feature complement(order(2219031..2219033,2219229..2219231)) /locus_tag="Alide_2169" /note="putative active site [active]" /db_xref="CDD:48643" gene complement(2219301..2220401) /locus_tag="Alide_2170" /db_xref="GeneID:10104224" CDS complement(2219301..2220401) /locus_tag="Alide_2170" /inference="protein motif:PFAM:PF03739" /note="PFAM: permease YjgP/YjgQ family protein; KEGG: dia:Dtpsy_1723 permease YjgP/YjgQ family protein" /codon_start=1 /transl_table=11 /product="permease yjgp/yjgq family protein" /protein_id="YP_004126796.1" /db_xref="GI:319762859" /db_xref="InterPro:IPR005495" /db_xref="GeneID:10104224" /translation="MKTIRRLIYREVIVGVAFVTLAFLALFFFFDLVDELRWVGSNGY RMSHALLFVALSLPQHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALST LLTLGCAFVALTFAVGDYLAPISERAAALVRAQQLGQISTGATGAWLKERQGDHSFAV NVRALTPDGHMRDVRVFEFDARGRVASTTVAAQATFDDSGDAWNLEQVKRSVFEQRPN GDIRVTRRQEPTLLLHTRISPDMVAASLLKPDKMATIGLFHYIRHLEANGQSAQRYEI EFWRKVFYPLSCLVMVVLSLPFAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGN LQNWSPWLTAAAPGLIYSLLSLAAFGWLVLRR" misc_feature complement(2219307..2220386) /locus_tag="Alide_2170" /note="Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739" /db_xref="CDD:190734" misc_feature complement(2219304..2220299) /locus_tag="Alide_2170" /note="Predicted permeases [General function prediction only]; Region: COG0795; cl12074" /db_xref="CDD:189246" gene complement(2220398..2221492) /locus_tag="Alide_2171" /db_xref="GeneID:10104225" CDS complement(2220398..2221492) /locus_tag="Alide_2171" /inference="protein motif:PFAM:PF03739" /note="KEGG: dia:Dtpsy_1724 permease YjgP/YjgQ family protein; manually curated; PFAM: permease YjgP/YjgQ family protein" /codon_start=1 /transl_table=11 /product="permease yjgp/yjgq family protein" /protein_id="YP_004126797.1" /db_xref="GI:319762860" /db_xref="InterPro:IPR005495" /db_xref="GeneID:10104225" /translation="MLFDSSIRKELARSFGATLVVLITVVMTMMLIRVLGQASRGSVA PSDVMLVMGFTVLGQLSTILSLSLFVTVVGTLSRMYRDSEMVIWFSAGRGLLSLLAPL LRFSWPIMLAIAALSLVVWPWANRQIQELKTQYEQRSDVDRVAPGQFQESSNGSRVFF IDKDTPDANAASNVFIATNEAHRETITSAQSARIEIRNGERLALLHNGQRLETMLDKP GLRISEFTEYGTLIDSGSQSDPEAGAIKTRDTWDLARDPSPRHQAELGWRLGLAFAAL NFVVLGLAVAIVNPRAGRSTSLAFALFAFMVYYNLMTVGQAWIGAGRFGLVPFMLALH GGTLLAGLLLLAARHNRWSLRTLLSRGARA" misc_feature complement(2220503..2221492) /locus_tag="Alide_2171" /note="Predicted permeases [General function prediction only]; Region: COG0795; cl12074" /db_xref="CDD:189246" misc_feature complement(2220527..2221474) /locus_tag="Alide_2171" /note="Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739" /db_xref="CDD:190734" gene 2221516..2223009 /locus_tag="Alide_2172" /db_xref="GeneID:10104226" CDS 2221516..2223009 /locus_tag="Alide_2172" /inference="protein motif:PFAM:PF02789" /note="PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ajs:Ajs_1921 PepA aminopeptidase" /codon_start=1 /transl_table=11 /product="peptidase m17 leucyl aminopeptidase domain protein" /protein_id="YP_004126798.1" /db_xref="GI:319762861" /db_xref="GO:0004177" /db_xref="InterPro:IPR000819" /db_xref="InterPro:IPR008283" /db_xref="GeneID:10104226" /translation="MNFELKTLSLPDAAAHKCDLLVLLVPDGFKPQADALSVLAGRAI KDGDLELKPGKLLPLYGVPGIAARRLVLLGCGKGNAQAVRQAVQALGATLKAPSVRRV ALVFARDAEAGCVGAAVRALADASYVYTTTKPKADARALSRVTVGVPGGLETARPEFS ISVALVAGIEYAREWANRPANHATPTLVGDAAKALAKHAGIQCKLHGPAQVAKLGMGA FLAVAQGSEQPLRFVELRYDGAARSQAPVVLVGKGITFDTGGISLKPAAEMDEMKFDM GGAASVLGVFRALAELRPAINVVGLIPACENMPDGRAVKPGDVVTSMSGQTIEILNTD AEGRLVLCDALTYAARFKPAAVIDIATLTGACVVALGGLRSGLFASDDELAGQLMAAG DAAQDPCWRMPLDDEYAEGLKSNFADLANVAGRAGGAITAAKFLQSFVGDVPWAHLDI AGTAWKSGAAKGATGRPVGLLLHYLLASASAPAAKRRAAAPRRARAA" misc_feature 2221516..2222943 /locus_tag="Alide_2172" /note="multifunctional aminopeptidase A; Provisional; Region: PRK00913" /db_xref="CDD:179165" misc_feature 2221570..2222940 /locus_tag="Alide_2172" /note="Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein...; Region: Peptidase_M17; cd00433" /db_xref="CDD:48344" misc_feature order(2221651..2221656,2221693..2221695,2221720..2221722, 2221765..2221767,2222044..2222046,2222050..2222058, 2222188..2222190,2222194..2222196,2222281..2222283, 2222299..2222301,2222314..2222316,2222323..2222325, 2222332..2222337,2222431..2222433,2222437..2222448, 2222452..2222454,2222458..2222472,2222488..2222490, 2222494..2222496,2222506..2222508,2222614..2222628, 2222635..2222637,2222713..2222718,2222722..2222724, 2222737..2222739,2222743..2222748,2222761..2222763, 2222767..2222769,2222794..2222799,2222803..2222805, 2222896..2222898) /locus_tag="Alide_2172" /note="interface (dimer of trimers) [polypeptide binding]; other site" /db_xref="CDD:48344" misc_feature order(2222269..2222271,2222284..2222286,2222305..2222307, 2222338..2222340,2222515..2222517,2222521..2222523, 2222527..2222529,2222599..2222601) /locus_tag="Alide_2172" /note="Substrate-binding/catalytic site; other site" /db_xref="CDD:48344" misc_feature order(2222269..2222271,2222284..2222286,2222338..2222340, 2222515..2222517,2222521..2222523) /locus_tag="Alide_2172" /note="Zn-binding sites [ion binding]; other site" /db_xref="CDD:48344" gene 2223009..2223473 /locus_tag="Alide_2173" /db_xref="GeneID:10104227" CDS 2223009..2223473 /locus_tag="Alide_2173" /inference="protein motif:PFAM:PF04364" /note="PFAM: DNA polymerase III chi subunit HolC; KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit, HolC" /codon_start=1 /transl_table=11 /product="DNA polymerase iii chi subunit holc" /protein_id="YP_004126799.1" /db_xref="GI:319762862" /db_xref="GO:0003677" /db_xref="GO:0003887" /db_xref="InterPro:IPR007459" /db_xref="GeneID:10104227" /translation="MHTPAGAAGMTEVAFHFNAPDKLAYVCRLARKAMRHDARVVITG AAQDLQQLDRMLWALGTTDFVAHCLEDAGEEMLQLSPVVLARDACVCSHRDMLVNVGD TVPEGFAQFARLVEVVSQSDQADRSRARERWRHYVARGYGIVRHDLVLREGA" misc_feature 2223036..2223431 /locus_tag="Alide_2173" /note="DNA polymerase III chi subunit, HolC; Region: DNA_pol3_chi; cl01106" /db_xref="CDD:194036" gene 2223473..2223874 /locus_tag="Alide_2174" /db_xref="GeneID:10104228" CDS 2223473..2223874 /locus_tag="Alide_2174" /inference="similar to AA sequence:KEGG:Dtpsy_1727" /note="KEGG: dia:Dtpsy_1727 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126800.1" /db_xref="GI:319762863" /db_xref="GeneID:10104228" /translation="MAGAKTPPRFVPTLTDVVHVPGDGRPPMAAQAAPVQPQAQAPAP QAPSQTPSPQDGVAASGGLPRDFEEYVVHRVMQRVDVALDQRLREAIAQVVQEQTRFL VPRLRDEVESVVRHAVYEAVAQELADERGAR" gene 2224003..2225136 /locus_tag="Alide_2175" /db_xref="GeneID:10104229" CDS 2224003..2225136 /locus_tag="Alide_2175" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1925 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004126801.1" /db_xref="GI:319762864" /db_xref="InterPro:IPR000709" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10104229" /translation="MQLKLKLTVAATIAAVASMAAAQGVTVVKIGNVAPMSGPQAHYG KDIENGVRMAIDDMNAQGVVIGGKKVKLELVNEDDASDPKQGTAAAQKLCDAKVAGVV GHLNSGTTIPASKVYNDCGIPHVTGAATNPSLTKPGYKTTFRIIANDNALGVGLAMYA AETLKLKSVAVIDDRTAYGQGVANVFKRAAAEKGIKVVDEQFTTDKATDFMAILTAIK AKNPDGVFFGGMDPQAGPMLRQMEQLGMANVKYFGGDGICTTELPRLAAGAKTIGNVI CAEGGASLAKMPGGLEWKKRYDAKYPGQYVLYSPYKYDATMLLVDAMKRAGSWDPKVY IPELLKSNYKGVTANIKFEPNGELVNPAITLYVYKDGKKAPLN" sig_peptide 2224003..2224071 /locus_tag="Alide_2175" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.824 at residue 23" misc_feature 2224081..2225121 /locus_tag="Alide_2175" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 2224087..2225106 /locus_tag="Alide_2175" /note="Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342" /db_xref="CDD:107337" misc_feature order(2224108..2224110,2224135..2224137,2224147..2224149, 2224156..2224158,2224717..2224719,2224783..2224785, 2224792..2224794,2224801..2224806,2224903..2224905) /locus_tag="Alide_2175" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:107337" misc_feature order(2224315..2224323,2224384..2224389,2224534..2224536, 2224690..2224692,2224765..2224767) /locus_tag="Alide_2175" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107337" gene complement(2225227..2226234) /locus_tag="Alide_2176" /db_xref="GeneID:10104230" CDS complement(2225227..2226234) /locus_tag="Alide_2176" /inference="protein motif:PFAM:PF02826" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ajs:Ajs_1926 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein" /protein_id="YP_004126802.1" /db_xref="GI:319762865" /db_xref="GO:0003887" /db_xref="GO:0048037" /db_xref="GO:0051287" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:10104230" /translation="MNIVILDDYQDAVRKLHCAERLDPYSAKVYTNTVKGLGQLSVRL RDADVIVLIRDRTQITRQLVEKLPRLKLIAQTGRVGSHIDLAACTEHGIAVAEGVSSP VAPAELTWALIMAAMRRLPQYISNLKHGAWQQSGLRTASMPPNFGLGCILRGKTLGIW GYGRIGQIVAGYGRAFGMNVRVWGREASRAQALSDGLQVAATRAEFFSQCDVVSLHIR LTDETRGLVTLDDLSCMKPTALLVNTSRAELIEPDALIAGLNRGRPGMAAVDVFESEP ILQGHALLRLENCICTPHIGYVEQDSYELYFGSAFDNVVNYIKGTPTNIVNPGALQVR R" misc_feature complement(2225251..2226222) /locus_tag="Alide_2176" /note="Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]; Region: SerA; COG0111" /db_xref="CDD:30460" misc_feature complement(2225347..2225907) /locus_tag="Alide_2176" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 2227138..2227401 /locus_tag="Alide_2177" /db_xref="GeneID:10104231" CDS 2227138..2227401 /locus_tag="Alide_2177" /inference="similar to AA sequence:KEGG:BMD_3062" /note="KEGG: bmd:BMD_3062 N-acetylmuramoyl-L-alanine amidase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126803.1" /db_xref="GI:319762866" /db_xref="GeneID:10104231" /translation="MEFFTTGSGVSFLTKQALQIEKLKSLRTFPSLTLGSGCSAGMRS LDRDPRIFTCRCAANSARLLLSGSMAKSTRWPIKSCMSGVMPL" gene complement(2227449..2227949) /locus_tag="Alide_2178" /pseudo /db_xref="GeneID:10104232" gene complement(2228037..2228285) /locus_tag="Alide_2179" /pseudo /db_xref="GeneID:10104233" gene 2228723..2229181 /locus_tag="Alide_2180" /db_xref="GeneID:10104234" CDS 2228723..2229181 /locus_tag="Alide_2180" /inference="similar to AA sequence:KEGG:Ajs_1927" /note="manually curated; KEGG: ajs:Ajs_1927 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126804.1" /db_xref="GI:319762867" /db_xref="GeneID:10104234" /translation="MTAWNFLRHFFVAGLGLAAAMVGGQAHAQAYVNATVSGQIAPGV YGRVDIGNGPAPVLLFPQPVVVAPPAVYVPRSPIYMYVPPGHARHWSKHCARYAACGQ PVYFVKEPPRRPGHFHGYRDRHDGRDHWRGHRRDDDRRDHGHRGHGRHDR" sig_peptide 2228723..2228809 /locus_tag="Alide_2180" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.992 at residue 29" gene 2229206..2229955 /locus_tag="Alide_2181" /db_xref="GeneID:10104235" CDS 2229206..2229955 /locus_tag="Alide_2181" /inference="protein motif:PFAM:PF10014" /note="KEGG: dia:Dtpsy_1731 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2257" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126805.1" /db_xref="GI:319762868" /db_xref="InterPro:IPR018724" /db_xref="GeneID:10104235" /translation="MAHVSFSPPYVPPGQIVQQLRDRGYAVLQPRDTADWLGCELADL KALSSDWADLPPDEFLKDGGRYRRRRHSCFIVDGMAVSQTPHRAHWQPVEYNALHGGM ERWFAPMRDATVAVPVWGRLMRSVATLAQAALATRPERWFIEAHQFRIDTAGGIGRPT PEGAHRDGVDLVAVFLVGREGVKGGETRIFEAAGPNGQRFTLSEPWSVMLLDDARMIH ETTPIQPEGEGGWRDTLVLTCRRGGFQAEQN" misc_feature 2229353..2229922 /locus_tag="Alide_2181" /note="Uncharacterized protein conserved in bacteria (DUF2257); Region: DUF2257; cl01794" /db_xref="CDD:194192" gene 2230050..2230490 /locus_tag="Alide_2182" /db_xref="GeneID:10104236" CDS 2230050..2230490 /locus_tag="Alide_2182" /inference="protein motif:PFAM:PF00582" /note="PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_1732 UspA domain protein" /codon_start=1 /transl_table=11 /product="uspa domain-containing protein" /protein_id="YP_004126806.1" /db_xref="GI:319762869" /db_xref="InterPro:IPR006015" /db_xref="InterPro:IPR006016" /db_xref="InterPro:IPR018062" /db_xref="GeneID:10104236" /translation="MFKHILVPVDGSETSMKAVAKASGLAKAFGSAVTALYVIDPYPF TGVGADFAYGQAQYLSAATAEANAALDAAKSAVTQAGVTAVNTMVGEGHAVHDGIQRA VESTGADLIVIGSHGRRGLEKLVLGSVTQKVLGVSRVPVLVVRE" misc_feature 2230059..2230445 /locus_tag="Alide_2182" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature order(2230071..2230079,2230161..2230163,2230386..2230391, 2230395..2230400,2230428..2230439) /locus_tag="Alide_2182" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(2230552..2231064) /locus_tag="Alide_2183" /db_xref="GeneID:10104237" CDS complement(2230552..2231064) /locus_tag="Alide_2183" /inference="protein motif:TFAM:TIGR02481" /note="KEGG: dac:Daci_4355 hypothetical protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein" /codon_start=1 /transl_table=11 /product="hemerythrin-like metal-binding protein" /protein_id="YP_004126807.1" /db_xref="GI:319762870" /db_xref="GO:0046872" /db_xref="InterPro:IPR012312" /db_xref="InterPro:IPR012827" /db_xref="InterPro:IPR016131" /db_xref="GeneID:10104237" /translation="MALLVWVPELDTGIPEIDRQHRRIVDYINRLYELRSTQDREALG DVIGEMVDYTLSHFVFEESLMESSGYLFSGPHKKVHELFTRKVAEMQSRFDAGEDVTD ELHGMLSRWLFNHIRNEDHGYVDTAKAYLRMAQQGGPAAEKERLKAELLQELEQRQKK KGLLARLFGG" misc_feature complement(2230690..2231055) /locus_tag="Alide_2183" /note="Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the...; Region: Hemerythrin; cd00522" /db_xref="CDD:29622" misc_feature complement(2230690..2231052) /locus_tag="Alide_2183" /note="hemerythrin-like metal-binding domain; Region: hemeryth_dom; TIGR02481" /db_xref="CDD:162878" misc_feature complement(order(2230690..2230692,2230801..2230803, 2230813..2230815,2230855..2230857,2230861..2230869, 2230879..2230881,2230885..2230890,2230897..2230914, 2230918..2230923,2230975..2230980,2230987..2230992, 2230996..2231001,2231008..2231013,2231020..2231022, 2231032..2231034,2231041..2231052)) /locus_tag="Alide_2183" /note="octamerization interface [polypeptide binding]; other site" /db_xref="CDD:29622" misc_feature complement(order(2230705..2230707,2230720..2230722, 2230825..2230827,2230837..2230839,2230882..2230884, 2230894..2230896,2231002..2231004)) /locus_tag="Alide_2183" /note="diferric-oxygen binding site [ion binding]; other site" /db_xref="CDD:29622" gene complement(2231177..2232154) /locus_tag="Alide_2184" /db_xref="GeneID:10104238" CDS complement(2231177..2232154) /locus_tag="Alide_2184" /inference="similar to AA sequence:KEGG:Ajs_1930" /note="KEGG: ajs:Ajs_1930 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126808.1" /db_xref="GI:319762871" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104238" /translation="MLLRRHILSLAALTCALGAPAVQAQGAYPSKPIRMIVPFPPGGG TDILARLVSSKLTEVNKWTVVADNKPGAGGTIGITEAVKAAPTGYDLVMGQKDNLVIG PWLYKNLPWDPTKDLTAVAHVAYTPVVIATSASSRFKTLADVVAAAKAAPGTITYGSP GNGTSIHLAGDLFEKAAGVKLSHVPYKGSNPALMDALAGNVDLLVSSLPSAMGQIKAG KLHPLAVTSAKRSSSLPDVPTVAESGFKGFDVSTWYGVFAPAGTPAAVVKTLNTEVNK LLAMAEVKAAINAQGAEPQAMTPEQFSTLLKTEYQQWKGIVEASGAKIE" sig_peptide complement(2232080..2232154) /locus_tag="Alide_2184" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.981 at residue 25" misc_feature complement(2231192..2232145) /locus_tag="Alide_2184" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2231189..2232010) /locus_tag="Alide_2184" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2232295..2233479) /locus_tag="Alide_2185" /db_xref="GeneID:10104239" CDS complement(2232295..2233479) /locus_tag="Alide_2185" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_1734 beta-ketothiolase; PFAM: Thiolase-like" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004126809.1" /db_xref="GI:319762872" /db_xref="GO:0046872" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020610" /db_xref="InterPro:IPR020615" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10104239" /translation="MSREVVVVSAVRTAIGTFGGSLKDVPPTELGATVVRESLARASV QGQDVGHVVFGHVVNTEPKDMYLSRVAAINGGCAEGTPAFNVNRLCGSGLQAIVSASQ SILLGDADIAIGAGAENMSRAPYASLATRFGARMGDTKMVDMMVGALHDPFHIVHMGV TAENIAAKWGITREEQDRLAVESHNRAERAIQAGYFKDQIVPVMLKSRKGEVAYATDE HFRAGATMEDMAKLKPVFVKENGTVTAGNASGINDAAAAVVLMEAKTAQARGAKPMAR LVAYAHAGVDPKYMGIGPVPATQLALKKAGLTVKDLDVIEANEAFAAQACAVTRDLGL DPAKVNPNGSGISLGHPIGATGALITVKALHELQRIQGRYALVTMCIGGGQGIAAIFE RM" misc_feature complement(2232298..2233479) /locus_tag="Alide_2185" /note="beta-ketothiolase; Provisional; Region: PRK09051" /db_xref="CDD:181625" misc_feature complement(2232301..2233464) /locus_tag="Alide_2185" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature complement(order(2232328..2232333,2232568..2232570, 2232628..2232630,2232634..2232636,2232640..2232642, 2233117..2233119,2233162..2233164,2233171..2233176, 2233195..2233197,2233219..2233230,2233261..2233263, 2233273..2233275,2233282..2233284,2233327..2233329, 2233408..2233410)) /locus_tag="Alide_2185" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature complement(order(2232340..2232342,2232430..2232432, 2233210..2233212)) /locus_tag="Alide_2185" /note="active site" /db_xref="CDD:29411" gene complement(2233588..2234358) /locus_tag="Alide_2186" /db_xref="GeneID:10104240" CDS complement(2233588..2234358) /locus_tag="Alide_2186" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1735 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004126810.1" /db_xref="GI:319762873" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10104240" /translation="MTQQLYILTGASRGMGLAMARQLLQPGHTLVCMARHTQPELTTG APAGAVLEQWTVDLSQARQAAQQLHAWLAAQPAGRYAGATLINNAGVIPRIAPLSACT SAQDMAGLANALRVGLEAPMLLTAAFLGATEAWGAIPRKVLNISSGLGRRAMASQASY CAAKAGMDHFTRCLALDEASKPHGAKVCSLAPGVIDTDMQVQLRGANPADFPDVQNFA SLKTGGMLTAPAAAAARVLAWLQRPDFGSNPVADVRDA" misc_feature complement(2233594..2234349) /locus_tag="Alide_2186" /note="short chain dehydrogenase; Provisional; Region: PRK06924" /db_xref="CDD:180753" misc_feature complement(2233594..2234346) /locus_tag="Alide_2186" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(2233774..2233785,2233867..2233869, 2233879..2233881,2233918..2233926,2234089..2234097, 2234251..2234259,2234314..2234316,2234320..2234325, 2234329..2234331)) /locus_tag="Alide_2186" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(2233867..2233869,2233879..2233881, 2233918..2233920,2234008..2234010)) /locus_tag="Alide_2186" /note="active site" /db_xref="CDD:187535" gene complement(2234392..2235069) /locus_tag="Alide_2187" /db_xref="GeneID:10104241" CDS complement(2234392..2235069) /locus_tag="Alide_2187" /inference="protein motif:PFAM:PF00849" /note="PFAM: pseudouridine synthase; KEGG: ajs:Ajs_1933 ribosomal large subunit pseudouridine synthase A" /codon_start=1 /transl_table=11 /product="pseudouridine synthase" /protein_id="YP_004126811.1" /db_xref="GI:319762874" /db_xref="GO:0003723" /db_xref="GO:0009982" /db_xref="InterPro:IPR006145" /db_xref="InterPro:IPR006224" /db_xref="GeneID:10104241" /translation="MSADPPRAAHAGVDHVHADDTLLVLDKPAGLLCVPGRGPDKQDS LSTRAQALWPDALIVHRLDQPTSGLVLMARGGAMQRALSHAFAQRLVHKRYQAVVAGL LRPARGSAGEWSEIALPIAADWERRPLRVVDAGRGQASLTRWRVLAHDEAGGTTRVEL EPVTGRTHQLRVHLAALGHPILGDALYADAATQARAPRLLLHACALGFGHPLHGGWCA FASQPPF" misc_feature complement(2234446..2235006) /locus_tag="Alide_2187" /note="PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF...; Region: PseudoU_synth_RluCD_like; cd02869" /db_xref="CDD:30029" misc_feature complement(order(2234557..2234559,2234881..2234892)) /locus_tag="Alide_2187" /note="active site" /db_xref="CDD:30029" gene complement(2235059..2237227) /locus_tag="Alide_2188" /db_xref="GeneID:10104242" CDS complement(2235059..2237227) /locus_tag="Alide_2188" /inference="protein motif:TFAM:TIGR00229" /note="TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; KEGG: dia:Dtpsy_1737 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver" /codon_start=1 /transl_table=11 /product="pas sensor protein" /protein_id="YP_004126812.1" /db_xref="GI:319762875" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10104242" /translation="MSHPDLSFLLRDEQPASDPSPAPVEPSERRGPGRASGAIAELIA ELRASQAELEAQNKVLRYSQAAAESASERFEALFSNVPLSLMVLDEHDVVVQANSMAQ RSFQPSERDRPLTALMPFVSPRHAARVRATFAAALESGTAEANEVVFEIDEHRHITGD LHIARIEAHTDDETPLTQFLCAVIDQGPLLAERQALQRSAQELQERNAQLHASERRLE AVINSALDAIICVDQRERITVFNPTAAMLFQCATSDALGSPLSRFLPQAQQVMAFAQL TTQAALGEMTALTASGRELAVEISVSFERHAEGETTTVFARDLTGRKREEARRSALEA QLRESHKMQAVGTMAGGIAHDFNNILHAILGNVELAKADGTPGTPLHESLLEIDKAGR RARDLVRQILTFSRNEAPQRSAVALAEVAHDTERLLRVTLPPEIELSMHLPQDLPPLL ADPTQVEQALLNLCTNAMHAIGSARGRIQVDAALVQPEQRLRESLGMAAGDYVALRVQ DNGPGMDEATLSRIFEPFFTTKPVGQGTGLGLAVVHGVMRTHGGGVDVHSTPGQGSRF TLYFPVATQAAHAPPAAAAPRTAPKAPAPSAGDRQRHVMYVDDDAALVFLVQRLLRRR GYEVSGFTDPHEATDALRAAPGRYDLLVTDYNMPGYSGLDLVRAARAIRPDLPVALAS GYVTAEIEQAALAEGARALIHKPNDVEELCATVDRLAHER" misc_feature complement(<2236421..2236765) /locus_tag="Alide_2188" /note="Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]; Region: RocR; COG3829" /db_xref="CDD:33622" misc_feature complement(2235518..2236525) /locus_tag="Alide_2188" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature complement(2236010..2236204) /locus_tag="Alide_2188" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2236025..2236027,2236037..2236039, 2236046..2236048,2236058..2236060,2236067..2236069, 2236079..2236081,2236130..2236132,2236139..2236141, 2236151..2236153,2236160..2236162,2236172..2236174, 2236184..2236186)) /locus_tag="Alide_2188" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2236166..2236168) /locus_tag="Alide_2188" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2235518..2235862) /locus_tag="Alide_2188" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2235530..2235532,2235536..2235541, 2235554..2235556,2235560..2235562,2235608..2235619, 2235686..2235691,2235695..2235697,2235701..2235703, 2235707..2235709,2235821..2235823,2235830..2235832, 2235842..2235844)) /locus_tag="Alide_2188" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2235830..2235832) /locus_tag="Alide_2188" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2235611..2235613,2235617..2235619, 2235689..2235691,2235695..2235697)) /locus_tag="Alide_2188" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(2235080..2235418) /locus_tag="Alide_2188" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(2235071..2235415) /locus_tag="Alide_2188" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2235113..2235118,2235125..2235127, 2235182..2235184,2235242..2235244,2235266..2235268, 2235401..2235406)) /locus_tag="Alide_2188" /note="active site" /db_xref="CDD:29071" misc_feature complement(2235266..2235268) /locus_tag="Alide_2188" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2235242..2235250,2235254..2235259)) /locus_tag="Alide_2188" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2235110..2235118) /locus_tag="Alide_2188" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(2237273..2237671) /locus_tag="Alide_2189" /db_xref="GeneID:10104243" CDS complement(2237273..2237671) /locus_tag="Alide_2189" /EC_number="5.2.1.8" /inference="protein motif:PRIAM:5.2.1.8" /note="KEGG: dia:Dtpsy_1738 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="YP_004126813.1" /db_xref="GI:319762876" /db_xref="InterPro:IPR001179" /db_xref="GeneID:10104243" /translation="MRFLFPVLASLALAPAAFAQAAPVTTSSGLIYESLKEGSGTAPK ATDTVRVHYRGTFADGKEFDSSYKRGQATEFPLNRVIPCWTEGLQRMKPGGKARLTCP ASIAYGERGAGGVIPPNATLHFEVELLPVR" sig_peptide complement(2237606..2237671) /locus_tag="Alide_2189" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.814 at residue 22" misc_feature complement(2237285..2237551) /locus_tag="Alide_2189" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587" /db_xref="CDD:187101" gene 2237951..2238745 /locus_tag="Alide_2190" /db_xref="GeneID:10104244" CDS 2237951..2238745 /locus_tag="Alide_2190" /inference="protein motif:PFAM:PF00196" /note="KEGG: dia:Dtpsy_1772 two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver" /codon_start=1 /transl_table=11 /product="regulatory protein luxr" /protein_id="YP_004126814.1" /db_xref="GI:319762877" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:10104244" /translation="MLNSKEANGTSPSAPEGDPPPVSGQFAVLQNPPSMWPDFMTGQV EKPVRVLLVDDDAHMRRVIAQELMADQRTLLVAQAASVREGRKAIKQHEFDVMLVDLN LGDGEGFQLIDYMKSIRPAAEAVIISIMENDDQVLHAFELGATGYLVKNSWFGSYPQA VLQVANGGASITPHLARRLLQRFDRAAAPATHEQQQDERETERLSQREKEVLRMVASG YTSAEIGTRLLISSLTVNTHIKNIYRKLQVRTRAQAVRFASLRGLF" misc_feature 2238095..2238739 /locus_tag="Alide_2190" /note="Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197" /db_xref="CDD:32379" misc_feature 2238101..2238400 /locus_tag="Alide_2190" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2238110..2238115,2238248..2238250,2238272..2238274, 2238332..2238334,2238389..2238391,2238398..2238400) /locus_tag="Alide_2190" /note="active site" /db_xref="CDD:29071" misc_feature 2238248..2238250 /locus_tag="Alide_2190" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2238257..2238262,2238266..2238274) /locus_tag="Alide_2190" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2238560..2238724 /locus_tag="Alide_2190" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(2238563..2238571,2238608..2238616,2238638..2238643, 2238647..2238652,2238656..2238670,2238701..2238703) /locus_tag="Alide_2190" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(2238596..2238598,2238602..2238604,2238608..2238610, 2238701..2238709,2238716..2238718) /locus_tag="Alide_2190" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 2238783..2239643 /locus_tag="Alide_2191" /db_xref="GeneID:10104245" CDS 2238783..2239643 /locus_tag="Alide_2191" /inference="protein motif:PFAM:PF02518" /note="KEGG: dia:Dtpsy_1773 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004126815.1" /db_xref="GI:319762878" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="GeneID:10104245" /translation="MPRITKKETMFRTRPPAYALACAALCLMQLVVNVLLVAYAGRFV PETALRWQIFSLAITFVLGVLILLQVPRALQWRPRRSIRPSRELKIERQRIARDLHDQ VGSQLVHAMALVDGGSPAMRPLLQALEHCLLDLRLLVDSMDGDDDALSDRLARLRHRI QPVLDHRGIALDWNVMPAGEVPMPVGLPARELTAIVQEALSNVLQHASATAVSISLEP VRTAEGDAWRLRVADNGKGLATPEPTGHEAGHGIAGMRLRASRAGGVLELLPSAEQGL CVQVTLPVRR" sig_peptide 2238783..2238884 /locus_tag="Alide_2191" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.715) with cleavage site probability 0.194 at residue 34" misc_feature <2238864..2239634 /locus_tag="Alide_2191" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG4585" /db_xref="CDD:34223" misc_feature 2239356..2239628 /locus_tag="Alide_2191" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(2239374..2239376,2239386..2239388,2239395..2239397, 2239473..2239475,2239479..2239481,2239485..2239487, 2239491..2239496,2239527..2239538,2239584..2239586, 2239590..2239592,2239605..2239610,2239614..2239616) /locus_tag="Alide_2191" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 2239386..2239388 /locus_tag="Alide_2191" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(2239485..2239487,2239491..2239493,2239527..2239529, 2239533..2239535) /locus_tag="Alide_2191" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 2239735..2240322 /locus_tag="Alide_2192" /db_xref="GeneID:10104246" CDS 2239735..2240322 /locus_tag="Alide_2192" /inference="similar to AA sequence:KEGG:Dtpsy_1406" /note="KEGG: dia:Dtpsy_1406 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126816.1" /db_xref="GI:319762879" /db_xref="GeneID:10104246" /translation="MQMRFLWLSGALLAAVLAGCAGSQRLVPKVEQGQAEGGAKTVTV ASESVACSRPQCPVLAAAWTSAKAGQAVLTVGLPYQKAEVTGADFHFGGSQTVHVRSR SRADAPALGFPATAFDVPLGLIGQIAYAPRSWVRVHTADGRSVDETLNSGDQRGRAVE AMSYFLAAVESASGKAIDVEGNRGGLLERLGGGNK" sig_peptide 2239735..2239806 /locus_tag="Alide_2192" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.569 at residue 24" gene complement(2240330..2241160) /locus_tag="Alide_2193" /db_xref="GeneID:10104247" CDS complement(2240330..2241160) /locus_tag="Alide_2193" /inference="protein motif:PFAM:PF08534" /note="PFAM: Redoxin domain protein; KEGG: ajs:Ajs_2433 redoxin domain-containing protein" /codon_start=1 /transl_table=11 /product="redoxin domain protein" /protein_id="YP_004126817.1" /db_xref="GI:319762880" /db_xref="GO:0016491" /db_xref="InterPro:IPR013740" /db_xref="InterPro:IPR017936" /db_xref="InterPro:IPR017937" /db_xref="GeneID:10104247" /translation="MERMLQLGPLALPWTLLILLAAWQLGNLVHERLSARSGLAPGPH GWRLTLAALLAARLGFVLGYPAEYAAAPWSVPDIRDGGWQPWAGLGAALLYVAVLWLW RSPWRRPLASGLAMFVAAWLTGLALLRATAAPGAADLPTWRGVALDAGSVAPADLRGQ PVVVNLWASWCPPCRREMPVLLQARQAHGQVRFLWVNQGEPPETVARFAARQGLPAAD VLLDTPAQLGRTLGYKALPTTLFYDGRGRLVAVRAGELSAATLAHHLAQITGPARPAP " misc_feature complement(2240399..2240731) /locus_tag="Alide_2193" /note="TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing...; Region: TlpA_like_family; cd02966" /db_xref="CDD:48515" misc_feature complement(order(2240639..2240641,2240648..2240650)) /locus_tag="Alide_2193" /note="catalytic residues [active]" /db_xref="CDD:48515" gene 2241387..2242010 /locus_tag="Alide_2194" /db_xref="GeneID:10104248" CDS 2241387..2242010 /locus_tag="Alide_2194" /inference="similar to AA sequence:KEGG:Dtpsy_1426" /note="KEGG: dia:Dtpsy_1426 2',5' RNA ligase" /codon_start=1 /transl_table=11 /product="2',5' RNA ligase" /protein_id="YP_004126818.1" /db_xref="GI:319762881" /db_xref="GeneID:10104248" /translation="MQAPQQSPAGVEPAAPLLQHHLFFAVLPDAAAAHAAADLAQSLI ARHDLQAQVRAQRLHATLLSLGWEAALSERHLAWARAAAARVRAPSFQLRFDRVLSFA RAPRAKRPCVLCGPADGHPGFLHLYEALHAQLWSQVPGLQGVPQAPRITPHMTLCYSR QAVPEQAVPPLAWTVDRFVLLHNVRGSSGPYEVLGEWPLGPTTLFET" misc_feature 2241543..2241986 /locus_tag="Alide_2194" /note="2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]; Region: LigT; COG1514" /db_xref="CDD:31703" gene complement(2242085..2242564) /locus_tag="Alide_2195" /db_xref="GeneID:10104249" CDS complement(2242085..2242564) /locus_tag="Alide_2195" /inference="similar to AA sequence:KEGG:Ajs_2417" /note="KEGG: ajs:Ajs_2417 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126819.1" /db_xref="GI:319762882" /db_xref="GeneID:10104249" /translation="MNTFTALLLAAALASPLAATAATAHDHGGGAETHQLQLNAGRKW GTDAPLRKAMTAIHGSVTQILPAAHAGKATQADYDAFVNAINQQVAYMVENCKLPPEA DAQLHIIVADLMAGAEAAQGKQGENKRAAGVVQVAKASNAYGRYFDHSGWKAVKLPH" sig_peptide complement(2242499..2242564) /locus_tag="Alide_2195" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.917 at residue 22" gene complement(2242691..2243161) /locus_tag="Alide_2196" /db_xref="GeneID:10104250" CDS complement(2242691..2243161) /locus_tag="Alide_2196" /inference="similar to AA sequence:KEGG:Dtpsy_1431" /note="KEGG: dia:Dtpsy_1431 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126820.1" /db_xref="GI:319762883" /db_xref="GeneID:10104250" /translation="MKYPAWTRALLAVSLALNLGVIAALVLRPALVAPPQGTAAPAVH LPDYLALTPEQRARWDGLEAPFLHDLSANWGDIRRHREALVRHIFAATPDRTAIDAEQ AAIAHLQAAQQQRVIAQLLAERALLHEEQRERLLQLLLGRYAGEATEEELLHRK" sig_peptide complement(2243090..2243161) /locus_tag="Alide_2196" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.735 at residue 24" gene complement(2243158..2243601) /locus_tag="Alide_2197" /db_xref="GeneID:10104251" CDS complement(2243158..2243601) /locus_tag="Alide_2197" /inference="similar to AA sequence:KEGG:Dtpsy_1432" /note="KEGG: dia:Dtpsy_1432 transmembrane anti-sigma factor" /codon_start=1 /transl_table=11 /product="transmembrane anti-sigma factor" /protein_id="YP_004126821.1" /db_xref="GI:319762884" /db_xref="GeneID:10104251" /translation="MTCPRTEDLSAFADQALPARRQAALRRHLLACPVCRQQLDALQA LRRQLHALPSPTLGFDLAAQLQDRLPRRAPRPRRAGWSLPGWMPTGLAAGAALVCGLW LGGLLLGTGASIPAASPAMARVFDPVPPGGLCAAAEICRLPRTLQ" gene complement(2243617..2244171) /locus_tag="Alide_2198" /db_xref="GeneID:10104252" CDS complement(2243617..2244171) /locus_tag="Alide_2198" /inference="protein motif:TFAM:TIGR02937" /note="KEGG: dia:Dtpsy_1433 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor, sigma-70 family" /protein_id="YP_004126822.1" /db_xref="GI:319762885" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0016987" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:10104252" /translation="MRPLSPLDETDRIARARRGEIAAFSELVAHYQDRIYRFLVRMTR SQEDARELTQETFLSAYEALPRWRPDARLSTWLFRIARNQAVDRLRRAQRVEFVALDE ALHEQVPADTPTPEAALQARQRIAALERALARLPVEHREILLLRDIEDMPYEDIAEVL GISLGTVKSRIARARAGLLRHMPR" misc_feature complement(2243626..2244102) /locus_tag="Alide_2198" /note="RNA polymerase sigma factor, sigma-70 family; Region: sigma70-ECF; TIGR02937" /db_xref="CDD:188259" misc_feature complement(2243890..2244093) /locus_tag="Alide_2198" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature complement(2243638..2243766) /locus_tag="Alide_2198" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature complement(order(2243647..2243649,2243653..2243658, 2243662..2243670,2243674..2243679,2243683..2243685, 2243713..2243718,2243734..2243736,2243764..2243766)) /locus_tag="Alide_2198" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene 2244274..2244594 /locus_tag="Alide_2199" /db_xref="GeneID:10104253" CDS 2244274..2244594 /locus_tag="Alide_2199" /inference="similar to AA sequence:KEGG:Dtpsy_1434" /note="KEGG: dia:Dtpsy_1434 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126823.1" /db_xref="GI:319762886" /db_xref="GeneID:10104253" /translation="MSAIRLAAACAAALSAGLLAQSASAACYVVYGADKQLIYRSQTP PVDLSRPLHETVAQIAPGGTLVFSLDNHGCELEINHLPSVGAPRSGAADAAPPARVPP AERR" sig_peptide 2244274..2244351 /locus_tag="Alide_2199" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.549 at residue 26" gene 2244646..2246097 /locus_tag="Alide_2200" /db_xref="GeneID:10104254" CDS 2244646..2246097 /locus_tag="Alide_2200" /inference="protein motif:TFAM:TIGR00479" /note="KEGG: dia:Dtpsy_1435 23S rRNA 5-methyluridine methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, trma family" /protein_id="YP_004126824.1" /db_xref="GI:319762887" /db_xref="GO:0003723" /db_xref="GO:0008173" /db_xref="InterPro:IPR001566" /db_xref="InterPro:IPR010280" /db_xref="GeneID:10104254" /translation="MSDPIATHLPPEPQHPLPPGWLEVTSMDMDAQGVARKSDGKVVF IDGALPTELVSANTHRKKNNWEQASLTEIHRESSLRVRPGCPHFGLHAGACGGCKMQH LDAGAQVAMKQRVLEDNLWHLAKVKAETILRPIEGPAWGYRYRARLSVRYVPKKGTVL VGFHERKSRYIADMQTCKILPPHVDAMLMPLRALIAGMQARDTCPQIELACGDAVTAL VLRHLEPLSDADKDRLRAFAAEHGVQWWLQPKGPDTVHLLDEGGEQLAYGLPDFGITM PFKPTDFTQVNPHINRVLVTRALRLLDAREDERVIDWFCGLGNFTLPIATRSREVLGV EGSEALVARSRENYQKNQAQRQAGKALAATNFVARNLFEMTPEVLIADGAADKWLVDP PREGAFALSKALADIHQARLGAAEAPPLPAGHERWQPPRRIVYVSCNPATLARDAGLL VHQAGYRCAAAGVVNMFPHTAHVESMAVFERAA" misc_feature 2244706..2246091 /locus_tag="Alide_2200" /note="23S rRNA m(5)U1939 methyltransferase; Reviewed; Region: rumA; PRK13168" /db_xref="CDD:183875" misc_feature 2244919..2246088 /locus_tag="Alide_2200" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 2246109..2247452 /locus_tag="Alide_2201" /db_xref="GeneID:10104255" CDS 2246109..2247452 /locus_tag="Alide_2201" /EC_number="4.3.1.18" /inference="protein motif:TFAM:TIGR02035" /note="TIGRFAM: D-serine ammonia-lyase; KEGG: ajs:Ajs_2250 D-serine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit" /codon_start=1 /transl_table=11 /product="d-serine ammonia-lyase" /protein_id="YP_004126825.1" /db_xref="GI:319762888" /db_xref="GO:0008721" /db_xref="GO:0030170" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR011780" /db_xref="GeneID:10104255" /translation="MRSSPPPSHEDPVAARLRRAEPCLWFNPRRRDTAARLPVAGTQI GLDEMEAAAARFARCAPLLAQVFPELRAAGGVIESPLLRAPGLHPAAGLAPGQGALWI KADHGLPVAGSVKARGGIHEVLELAERLALQHGLLTPQSGPGDYRALAGPAARAVFAR HTVAVGSTGNLGLGIGVAASALGFRAVVHMSADAKEWKKERLRLRGVQVVEHAGDYEG AVAAGRAQAAQDPFSHFVDDERSLSLLLGYSAAAPYLRRQLRDAGIAVDARHPLFVYL PCGVGGAPAGITFGLRQVLGPHVHCFFAEPVQSPCFMVQMMAGQGAHPSVYDWCLTNK TEADGLAVPRASLPAAELMAPLLSGCFTVRDETLFRQLVQVLDATGERIEPSAAAGLG GPGLLAGTDGGRAWLAAQGLLPHLPRATHLVWTTGGLFVPPEAYARFVERGRAAG" misc_feature 2246175..2247404 /locus_tag="Alide_2201" /note="Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD)...; Region: Trp-synth-beta_II; cl00342" /db_xref="CDD:197407" misc_feature order(2246448..2246453,2246616..2246618,2246943..2246957, 2247264..2247266,2247384..2247389) /locus_tag="Alide_2201" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:107202" misc_feature 2246451..2246453 /locus_tag="Alide_2201" /note="catalytic residue [active]" /db_xref="CDD:107202" gene complement(2247466..2248056) /locus_tag="Alide_2202" /db_xref="GeneID:10104256" CDS complement(2247466..2248056) /locus_tag="Alide_2202" /inference="protein motif:PFAM:PF01205" /note="PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: ajs:Ajs_2244 hypothetical protein" /codon_start=1 /transl_table=11 /product="uncharacterized protein family upf0029, impact, n-terminal protein" /protein_id="YP_004126826.1" /db_xref="GI:319762889" /db_xref="InterPro:IPR001498" /db_xref="InterPro:IPR015269" /db_xref="GeneID:10104256" /translation="MPYTLSAPVHSELVIKKSRFIGCVQPMADRAGAQAVVDGLWRQH PGAAHVCWALLAGGQSAAVDDGEPGGTAGRPMLDVLRHQDLEGVLATVVRYFGGVKLG AGGLVRAYTDTVAQALLQAEKTPLQRMSTLRCSVPYALEGLLRREVEAAGAELLDVAH GSQVLLRLRLPQARAEAFMERMGDLGHGRVAWLAPE" misc_feature complement(2247487..2248056) /locus_tag="Alide_2202" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1739" /db_xref="CDD:31925" misc_feature complement(2247703..2248014) /locus_tag="Alide_2202" /note="Uncharacterized protein family UPF0029; Region: UPF0029; pfam01205" /db_xref="CDD:189888" misc_feature complement(2247493..2247657) /locus_tag="Alide_2202" /note="Domain of unknown function (DUF1949); Region: DUF1949; pfam09186" /db_xref="CDD:150017" gene 2248238..2248696 /locus_tag="Alide_2203" /db_xref="GeneID:10104257" CDS 2248238..2248696 /locus_tag="Alide_2203" /inference="protein motif:TFAM:TIGR02695" /note="KEGG: har:HEAR1365 azurin precursor; TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein" /codon_start=1 /transl_table=11 /product="azurin" /protein_id="YP_004126827.1" /db_xref="GI:319762890" /db_xref="InterPro:IPR000923" /db_xref="InterPro:IPR014068" /db_xref="GeneID:10104257" /translation="MHTLWKPLAMALVAGAGVHAAWAADCATEINGNDAMQYDKTSIS VPASCKQFTVTLKHTGKLPKATMGHNWVLAKTADMQGVVADGVAAGLGKNYVKDGDTR VLAHTKVVGGGESDAVTFATSALKAGGPYSYFCSFPGHSVVMKGSLALAK" sig_peptide 2248238..2248309 /locus_tag="Alide_2203" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.945 at residue 24" misc_feature 2248319..2248687 /locus_tag="Alide_2203" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" gene 2248773..2251199 /locus_tag="Alide_2204" /db_xref="GeneID:10104258" CDS 2248773..2251199 /locus_tag="Alide_2204" /inference="protein motif:PFAM:PF08497" /note="KEGG: dia:Dtpsy_1631 radical SAM domain protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="radical sam domain protein" /protein_id="YP_004126828.1" /db_xref="GI:319762891" /db_xref="GO:0003824" /db_xref="GO:0051536" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR013704" /db_xref="InterPro:IPR020612" /db_xref="GeneID:10104258" /translation="MNAPIDVSFFPRHAKPLTSYRPYWAKRFGPAPYLPMSRAEMERL GWDSCDVVLVTGDAYVDHPSFGMAVIGRVLEAQGFRVGIIAQPDWHSADAFKALGKPN LFWGVTAGNMDSMINRYTADRKIRSDDAYTPGDVGGKRPDRAAVVYSQRCREAYKDVP IVLGGIEGSLRRIAHYDYWSDKVRRSIVVDSKCDILLFGNAERALVEVAHRIAQRQPV ESITDVRGTAFVRRTSEPGWFEIDSTEVDEPGRVDELINPYMTTSEQAAAQGQACAQE DAPSSIAASACQESAGGKKDLKPVQFIPNPALPARGRSGRALPPRGRTVIRLPGYEQV KADPVLYAHANRVLHLETNPGNARALVQAHGEGRAARDVWLNPPPIPLTTAEMDWIFG LPYARNPHPGYADEKGGFEGATKIPAWEMIRASINIMRGCFGGCTFCSITEHEGRIIQ SRSEDSILAEVEDIRDKVKGFTGTISDLGGPTANMYRLGCRSPEIEAACRKPSCVFPG ICQNLHTDHGPLINIYRRARRLPGIKKILIGSGLRYDLAVQSPEYVKELVQHHVGGYL KIAPEHTEAGPLSKMMKPGIGNYDRFKQMFEQYTAEAGKKQYLIPYFIAAHPGTTDED MLNLALWLKQNGFRADQVQAFYPSPMASATAMYHTGRNTLTRVRRQMRDAAEEQVDTV RGEKRRRLHKAFLRYHDPNNWPLLREALKSMGRADLIGNGKHHLIPTFQPLVDGGYQS ARRKNSTAPKGGAPGVGYAINKDGKAVALRRRPQEQQEPQGDVRFRTAQPRPGQMLSQ HTGLPPRKRR" misc_feature 2248812..2251022 /locus_tag="Alide_2204" /note="hypothetical protein; Provisional; Region: PRK01254" /db_xref="CDD:179264" misc_feature 2250048..2250668 /locus_tag="Alide_2204" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" misc_feature 2250690..2251190 /locus_tag="Alide_2204" /note="Domain of unknown function (DUF3362); Region: DUF3362; pfam11842" /db_xref="CDD:152278" gene complement(2251309..2252505) /locus_tag="Alide_2205" /db_xref="GeneID:10104259" CDS complement(2251309..2252505) /locus_tag="Alide_2205" /EC_number="2.6.1.1" /inference="protein motif:PRIAM:2.6.1.1" /note="KEGG: ajs:Ajs_2151 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="aspartate transaminase" /protein_id="YP_004126829.1" /db_xref="GI:319762892" /db_xref="InterPro:IPR000796" /db_xref="InterPro:IPR004838" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10104259" /translation="MSLFSAVEMAPRDPILGLNEQFAADTNPAKVNLGVGVYFDDNGK LPLLQCVQAAEKAMMDKPTARGYLPIDGIAAYDNAVKALVFGADSDVVKSGRVATVQA IGGTGGLKIGADFLKKVSPDAKVLISDPSWENHRAIFTNAGFEVGSYRYYDAATRSVD FDGMLADLQAAAPGTIAVLHACCHNPTGYDITPAQWDKVIEVVKAKGLVAFLDMAYQG FGHGIAEDGAVIGKFVAAGLNIFVSTSFSKSFSLYGERVGALSVVANDKDEAARVLSQ LKIVIRTNYSNPPTHGGAVVAAVLNDPALRALWEKELGEMRVRIKAMRQKLVDGLKAA GVKQDMGFITTQIGMFSYSGLSKDQMVRLRSEFGVYGTDTGRMCVAALNSKNIDYVCQ SIAKVI" misc_feature complement(2251318..2252415) /locus_tag="Alide_2205" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(2251738..2251740,2251762..2251767, 2251771..2251773,2251858..2251860,2251951..2251953, 2252110..2252112,2252188..2252196)) /locus_tag="Alide_2205" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(2251621..2251623,2251630..2251632, 2251738..2251746,2251879..2251881,2252080..2252082, 2252185..2252187)) /locus_tag="Alide_2205" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(2251762..2251764) /locus_tag="Alide_2205" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 2252621..2254708 /locus_tag="Alide_2206" /db_xref="GeneID:10104260" CDS 2252621..2254708 /locus_tag="Alide_2206" /inference="protein motif:TFAM:TIGR00631" /note="TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: dia:Dtpsy_1636 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein" /codon_start=1 /transl_table=11 /product="excinuclease abc, b subunit" /protein_id="YP_004126830.1" /db_xref="GI:319762893" /db_xref="GO:0003677" /db_xref="GO:0005524" /db_xref="GO:0009381" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR001943" /db_xref="InterPro:IPR004807" /db_xref="InterPro:IPR006935" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="GeneID:10104260" /translation="MQPAATAAPAPAGQFVHFPDSPFELFQPYPPAGDQPEAIAKLVE GVRDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPKN AVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRLSCTKSLLERRDVVIVATV SAIYGIGNPESYHRMVMTLRAGDRMGQREVIAQLIRMQYQRNDQDFSRGKFRVRGDTI DVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVQQKIPRFTVYPSSHYVTPRDVVLG AVETIKEELRERLEFFAREGKLVEAQRLEQRTRFDLEMLSEVGHCKGIENYTRHLSGA APGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRSRKTTLVEYGFRLPSALDN RPLKFEEFEQRMRQVVFVSATPADYEKEHSGQIVDQVVRPTGLVDPEVEVRPASTQVD DVLQEIRLRVEKNERVLITTLTKRMAEQLTDYLADNGVKVRYLHSDVDTVERVEIIRD LRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGK AILYADRVTDSMKKAIGETERRRAKQIAHNEALGITPRSIVKQVRDLIDGVYSEKAGQ EALRLEQEAARHAELEEMSEKDIAREIKRLEKRMLEHARNLEFEQAARVRDELARLKD RVFGAHGGDHVPA" misc_feature 2252675..2254681 /locus_tag="Alide_2206" /note="excinuclease ABC subunit B; Provisional; Region: PRK05298" /db_xref="CDD:180000" misc_feature 2252783..>2253091 /locus_tag="Alide_2206" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 2252798..2252812 /locus_tag="Alide_2206" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 2253935..2254330 /locus_tag="Alide_2206" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(2254031..2254042,2254100..2254105,2254178..2254186) /locus_tag="Alide_2206" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(2254202..2254204,2254280..2254282,2254292..2254294, 2254301..2254303) /locus_tag="Alide_2206" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 2254325..2254456 /locus_tag="Alide_2206" /note="Ultra-violet resistance protein B; Region: UvrB; pfam12344" /db_xref="CDD:192995" misc_feature 2254565..2254669 /locus_tag="Alide_2206" /note="UvrB/uvrC motif; Region: UVR; pfam02151" /db_xref="CDD:145355" gene 2254959..2255495 /locus_tag="Alide_2207" /db_xref="GeneID:10104261" CDS 2254959..2255495 /locus_tag="Alide_2207" /inference="protein motif:TFAM:TIGR02010" /note="KEGG: dia:Dtpsy_1637 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly transcription factor iscr" /protein_id="YP_004126831.1" /db_xref="GI:319762894" /db_xref="GO:0003690" /db_xref="GO:0003700" /db_xref="InterPro:IPR000944" /db_xref="InterPro:IPR010242" /db_xref="GeneID:10104261" /translation="MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQ LFGKLRRHELVESTRGPGGGYTLARKAGDITVADIIVSVDEPIDATQCGGKENCLGEA GRCMTHDLWATLNQRMVEFLDSVTLQKLVDDQLAKGVQIEDKPVTRRAISTTPVVKPI RVNAPNSVFALGNAFAKS" misc_feature 2254959..2255366 /locus_tag="Alide_2207" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2254959..2255354 /locus_tag="Alide_2207" /note="Rrf2 family protein; Region: rrf2_super; TIGR00738" /db_xref="CDD:129821" gene 2255571..2256791 /locus_tag="Alide_2208" /db_xref="GeneID:10104262" CDS 2255571..2256791 /locus_tag="Alide_2208" /EC_number="2.8.1.7" /inference="protein motif:TFAM:TIGR02006" /note="TIGRFAM: cysteine desulfurase IscS; KEGG: dia:Dtpsy_1638 cysteine desulfurase IscS; PFAM: aminotransferase class V" /codon_start=1 /transl_table=11 /product="cysteine desulfurase iscs" /protein_id="YP_004126832.1" /db_xref="GI:319762895" /db_xref="GO:0030170" /db_xref="GO:0031071" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR010240" /db_xref="InterPro:IPR016454" /db_xref="InterPro:IPR020578" /db_xref="GeneID:10104262" /translation="MDMTPHFPIYLDYGATTPVDGRVVDAMIPWLREHFGNPASRSHA WGWEAEEAVEKARGHVADLIGADPREIVWTSGATESNNLAIKGAAHFYKGKGKHLITV KTEHKAVLDVMRELERQGFEVTYLDVQENGLLDIEKFKAALRPDTILASVMFVNNEIG VVQDIPAIGALCREKGVIFHVDAAQATGKVEIDLGRLPVDLMSLASHKTYGPKGIGAL YVRRKPRVRIEAQMHGGGHERGMRSGTLPTHQIVGMGEAFRLARLEMVQDLAKVRALH ERLLNGLKDIEQVFINGDLRQRVPHNLNISFNYVEGESLIMGIKGLAVSSGSACTSAS LEPSYVLRALGRSDELAHSSLRMTIGRFTTEEEIDYAISTIRHNVAKLRELSPLWEMY QDGVDLSTIQWAAH" misc_feature 2255586..2256698 /locus_tag="Alide_2208" /note="Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520" /db_xref="CDD:30866" misc_feature 2255595..2256695 /locus_tag="Alide_2208" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(2255799..2255804,2255811..2255813,2256030..2256032, 2256114..2256116,2256123..2256125,2256183..2256185, 2256192..2256194) /locus_tag="Alide_2208" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 2256192..2256194 /locus_tag="Alide_2208" /note="catalytic residue [active]" /db_xref="CDD:99742" gene 2256814..2257215 /locus_tag="Alide_2209" /db_xref="GeneID:10104263" CDS 2256814..2257215 /locus_tag="Alide_2209" /inference="protein motif:TFAM:TIGR01999" /note="KEGG: dia:Dtpsy_1639 FeS cluster assembly scaffold IscU; TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein" /codon_start=1 /transl_table=11 /product="fes cluster assembly scaffold iscu" /protein_id="YP_004126833.1" /db_xref="GI:319762896" /db_xref="GO:0005506" /db_xref="GO:0005515" /db_xref="GO:0051536" /db_xref="InterPro:IPR002871" /db_xref="InterPro:IPR011339" /db_xref="GeneID:10104263" /translation="MAYSDKVIDHYENPRNVGSFDKGDDTVGTGMVGAPACGDVMKLQ IKVNPETGVIEDARFKTYGCGSAIASSSLVTEWVKGKTLDEAAALKNSQIAEELALPP VKIHCSILAEDAIKAAVNDYKAKHEAAVEAA" misc_feature 2256820..2257167 /locus_tag="Alide_2209" /note="Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664" /db_xref="CDD:143480" misc_feature order(2256820..2256828,2256835..2256840,2256922..2256927, 2257003..2257005,2257009..2257011,2257120..2257125, 2257129..2257134) /locus_tag="Alide_2209" /note="trimerization site [polypeptide binding]; other site" /db_xref="CDD:143480" misc_feature order(2256922..2256924,2257003..2257005,2257132..2257134) /locus_tag="Alide_2209" /note="active site" /db_xref="CDD:143480" gene 2257223..2257546 /locus_tag="Alide_2210" /db_xref="GeneID:10104264" CDS 2257223..2257546 /locus_tag="Alide_2210" /inference="protein motif:TFAM:TIGR02011" /note="KEGG: dia:Dtpsy_1640 iron-sulfur cluster assembly protein IscA; TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly protein isca" /protein_id="YP_004126834.1" /db_xref="GI:319762897" /db_xref="GO:0005198" /db_xref="GO:0005506" /db_xref="GO:0005515" /db_xref="GO:0051536" /db_xref="InterPro:IPR000361" /db_xref="InterPro:IPR011302" /db_xref="InterPro:IPR016092" /db_xref="InterPro:IPR017870" /db_xref="GeneID:10104264" /translation="MAITLTEAAARHVTRYLARRGKGLGVRLGVKTTGCSGLAYKLEY VDEQAPEDIVFENHGVKVLIDPKSLAYIDGTELDFVREGLNEGFRFINPNERDRCGCG ESFRV" misc_feature 2257229..2257543 /locus_tag="Alide_2210" /note="Iron-sulphur cluster biosynthesis; Region: Fe-S_biosyn; cl00400" /db_xref="CDD:189093" gene 2257604..2258122 /locus_tag="Alide_2211" /db_xref="GeneID:10104265" CDS 2257604..2258122 /locus_tag="Alide_2211" /inference="protein motif:TFAM:TIGR00714" /note="TIGRFAM: co-chaperone Hsc20; PFAM: HSC20 oligomerisation; heat shock protein DnaJ domain protein; KEGG: dia:Dtpsy_1641 co-chaperone Hsc20; SMART: heat shock protein DnaJ domain protein" /codon_start=1 /transl_table=11 /product="co-chaperone hsc20" /protein_id="YP_004126835.1" /db_xref="GI:319762898" /db_xref="GO:0051087" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR004640" /db_xref="InterPro:IPR009073" /db_xref="GeneID:10104265" /translation="MNLQSDDFELFGVPRSFAQERATLDARWKDLQREAHPDRFAAQG AAAQRVAMQWSVRINEAYQRLKDPLRRAAYLCELHGAPIRAEDNTAMPAAFLMQQMQW REALEEAASMAELDALDDETQAARGAAIARCGELIDARQDYAGAAREVRALMFIARFA QDIDSRREQLGQ" misc_feature 2257604..2258113 /locus_tag="Alide_2211" /note="co-chaperone HscB; Provisional; Region: hscB; PRK03578" /db_xref="CDD:179598" misc_feature 2257625..2257828 /locus_tag="Alide_2211" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cl02542" /db_xref="CDD:194350" misc_feature 2257871..2258095 /locus_tag="Alide_2211" /note="HSCB C-terminal oligomerisation domain; Region: HSCB_C; pfam07743" /db_xref="CDD:191838" gene 2258159..2260027 /locus_tag="Alide_2212" /db_xref="GeneID:10104266" CDS 2258159..2260027 /locus_tag="Alide_2212" /inference="protein motif:TFAM:TIGR01991" /note="KEGG: dia:Dtpsy_1642 chaperone protein HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70" /codon_start=1 /transl_table=11 /product="fe-s protein assembly chaperone hsca" /protein_id="YP_004126836.1" /db_xref="GI:319762899" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="GO:0051082" /db_xref="InterPro:IPR001023" /db_xref="InterPro:IPR010236" /db_xref="InterPro:IPR013126" /db_xref="InterPro:IPR018181" /db_xref="GeneID:10104266" /translation="MALLQISEPGQSPDPHQRRIAIGIDLGTTHSLVAAMKSGVAECL PDAQGRVLLPSVVRYLAGGARHIGHEAAAAQTLDPSNTVASVKRFMGRGLADIAGHEA LPYDFVSSQDAGGMLRLSTAAGMKSPVEVSAEILATLRFRAEDSFDSDIYGAVITVPA YFDDAQRQATKDAARLAGLNLLRLINEPTAAAIAYGLDNAAEGVYAVYDLGGGTFDIS VLRLTKGVFEVIATGGDSALGGDDYDAFLADWVLQRLGLRARTPEDKAAVRLAARACK EALTATETAAFSADVAGQRVHFDVKRSDFDAVTAALTQRSLAAVRRALRDAQIGRDDV QGVVLVGGSTRMPQVREAVAGFFGREPLTNLNPDEVVAIGAAIQANQLAGNDAAGDLL LLDVIPLSLGLETMGGLVERIVNRNETIPTAKAQDFTTYKDGQTALALHVVQGERDLV QDCRSLARFELRGIPPMAAGAARIRVTFTVDADGLLSVSAREQTSGVEARIDVKPSYG LSDEQIARMLQDGFATAQQDMRARALVEARVDADRLLVATQSALDADGDMLAPDEREA IDALMQALRTALEAGRDAAAIEAATSALAKGTEAFAARRMNRGIREALAGRNVDTL" misc_feature 2258159..2260024 /locus_tag="Alide_2212" /note="chaperone protein HscA; Provisional; Region: hscA; PRK05183" /db_xref="CDD:179957" gene 2260063..2260401 /locus_tag="Alide_2213" /db_xref="GeneID:10104267" CDS 2260063..2260401 /locus_tag="Alide_2213" /inference="protein motif:TFAM:TIGR02007" /note="KEGG: dia:Dtpsy_1643 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin" /codon_start=1 /transl_table=11 /product="ferredoxin, 2fe-2S type, isc system" /protein_id="YP_004126837.1" /db_xref="GI:319762900" /db_xref="GO:0009055" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR001055" /db_xref="InterPro:IPR011536" /db_xref="InterPro:IPR018298" /db_xref="GeneID:10104267" /translation="MPVIRILPHHEYCPEGAEITAPAGTSICEALLDNNIKIEHACDM SCACTTCHVIVRQGYESLNDAEEEEEDLLDRAWGLEPQSRLSCQAILAQSDVTVEIPK YSINHAKENH" misc_feature 2260102..2260359 /locus_tag="Alide_2213" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(2260174..2260179,2260186..2260188,2260195..2260197, 2260204..2260215,2260318..2260323) /locus_tag="Alide_2213" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(2260186..2260188,2260204..2260206,2260213..2260215, 2260321..2260323) /locus_tag="Alide_2213" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" gene 2260401..2261129 /locus_tag="Alide_2214" /db_xref="GeneID:10104268" CDS 2260401..2261129 /locus_tag="Alide_2214" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR00573" /note="SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: ajs:Ajs_2138 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III" /codon_start=1 /transl_table=11 /product="DNA polymerase iii, epsilon subunit" /protein_id="YP_004126838.1" /db_xref="GI:319762901" /db_xref="GO:0003677" /db_xref="GO:0003887" /db_xref="InterPro:IPR006054" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR006309" /db_xref="InterPro:IPR013520" /db_xref="GeneID:10104268" /translation="MPRQIVLDTETTGLSAENGDRIIELGCVELLSRKLTGNNLHLYL NPERDSHEDALKVHGISNEFLRDKPKFAEVVHDILEYLRGAELIIHNASFDVGFLDKE LELAGLPPLAAHVDGVIDTLAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAE LLADVYINMTRGQDALLIMDETANGEGGVKVAAVDLSRLVLPVLLASDQELAEHEDLL AQIDKSSAGKTIWRTRAEAQKAMP" misc_feature 2260407..2261075 /locus_tag="Alide_2214" /note="Proteobacterial; Region: dnaQ_proteo; TIGR01406" /db_xref="CDD:130473" misc_feature 2260410..2260910 /locus_tag="Alide_2214" /note="DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131" /db_xref="CDD:99835" misc_feature order(2260422..2260433,2260437..2260442,2260557..2260562, 2260569..2260574,2260668..2260673,2260677..2260685, 2260803..2260808,2260848..2260850,2260857..2260859, 2260872..2260874) /locus_tag="Alide_2214" /note="active site" /db_xref="CDD:99835" misc_feature order(2260422..2260433,2260437..2260442,2260557..2260562, 2260569..2260574,2260668..2260673,2260677..2260682, 2260803..2260808,2260848..2260850,2260857..2260859, 2260872..2260874) /locus_tag="Alide_2214" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99835" misc_feature order(2260422..2260424,2260428..2260430,2260683..2260685, 2260857..2260859,2260872..2260874) /locus_tag="Alide_2214" /note="catalytic site [active]" /db_xref="CDD:99835" gene 2261156..2261230 /locus_tag="Alide_R0032" /note="tRNA-Val2" /db_xref="GeneID:10104269" tRNA 2261156..2261230 /locus_tag="Alide_R0032" /product="tRNA-Val" /db_xref="GeneID:10104269" gene 2261265..2261339 /locus_tag="Alide_R0033" /note="tRNA-Val3" /db_xref="GeneID:10104270" tRNA 2261265..2261339 /locus_tag="Alide_R0033" /product="tRNA-Val" /db_xref="GeneID:10104270" gene 2261423..2262535 /locus_tag="Alide_2215" /db_xref="GeneID:10104271" CDS 2261423..2262535 /locus_tag="Alide_2215" /inference="protein motif:PFAM:PF01266" /note="PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2136 FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="fad dependent oxidoreductase" /protein_id="YP_004126839.1" /db_xref="GI:319762902" /db_xref="GO:0016491" /db_xref="InterPro:IPR006076" /db_xref="GeneID:10104271" /translation="MSDRVDCVVVGAGVVGLAVARALALAGREVMVLEAANAIGTETS SRNSEVIHAGIYYPQGSLKARLCVQGKAMLYDYCAQRGLPHRRCGKLIVATSPQQQAQ LDGIRQRAAANGVDDLQWLTRDEARALEPELECVAALLSPSTGIVDSHALMLALLGDL ENAGGLLALNSPLERAQCSPDAIHLEARDGTRISARTVVNAAGLHAPDLARRFAGLDP AHVPRAAYAKGNYFTLSGRAPFSRLIYPVPEAAGLGVHLTLDLGGQAKFGPDVQWVDG PDDLVVDAGRAQGFYAEVRKYWPGLRDGALAAGYAGIRPKIHEPQEPAADFVIQGPRQ HGVAGLVNLFGIESPGLTSALAIGAYVSDMFSDRSA" misc_feature 2261507..2262511 /locus_tag="Alide_2215" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" gene 2262668..2262976 /locus_tag="Alide_2216" /db_xref="GeneID:10104272" CDS 2262668..2262976 /locus_tag="Alide_2216" /inference="protein motif:PFAM:PF05957" /note="PFAM: protein of unknown function DUF883 ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126840.1" /db_xref="GI:319762903" /db_xref="InterPro:IPR010279" /db_xref="GeneID:10104272" /translation="MTSVSETISTTQGELEKLVGDLRGLLANRDLDGIPEIKQLRQRL DDGVQTVRDAAVRAAQQAADQAKDAARAADRYAHDEPWRVASAALAVGALVGFLLARR " gene 2263001..2263405 /locus_tag="Alide_2217" /db_xref="GeneID:10104273" CDS 2263001..2263405 /locus_tag="Alide_2217" /inference="similar to AA sequence:KEGG:Dtpsy_1648" /note="KEGG: dia:Dtpsy_1648 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126841.1" /db_xref="GI:319762904" /db_xref="GeneID:10104273" /translation="MGRMNWISLLNLQGLAARWRTAISEGATAVEDRMELARLEWAEH RRRMALLALLLVVFGTLAVVALLLLSAAVLVQFWDTPQRALVAWILAGVWCAACGGVL VALVSLARRSRNAFALTRRELAQDWHVIKEQL" gene 2263407..2263706 /locus_tag="Alide_2218" /db_xref="GeneID:10104274" CDS 2263407..2263706 /locus_tag="Alide_2218" /inference="similar to AA sequence:KEGG:Ajs_2133" /note="KEGG: ajs:Ajs_2133 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126842.1" /db_xref="GI:319762905" /db_xref="GeneID:10104274" /translation="MPMSPRQPTPEQQQVLDRILAQRERLRARRDAMRQARAAAAPQG RVNPGDPLIARFVSFARLHPLAVAAVLGVAALAGPGRVVRWAGVVLPAILRMRRG" gene complement(2263759..2264805) /locus_tag="Alide_2219" /db_xref="GeneID:10104275" CDS complement(2263759..2264805) /locus_tag="Alide_2219" /EC_number="1.3.3.1" /inference="protein motif:TFAM:TIGR01036" /note="TIGRFAM: dihydroorotate dehydrogenase; KEGG: ajs:Ajs_2132 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase" /codon_start=1 /transl_table=11 /product="dihydroorotate dehydrogenase" /protein_id="YP_004126843.1" /db_xref="GI:319762906" /db_xref="GO:0004158" /db_xref="InterPro:IPR001295" /db_xref="InterPro:IPR005719" /db_xref="InterPro:IPR012135" /db_xref="GeneID:10104275" /translation="MSLLPYAFARPFLFGMDAEAAHELTMDMLARGQRTPLQWAWCNE TVSDPVQLAGLTFPNRVGLAAGLDKNARCIDALAAMGFGFVEVGTVTPKAQPGNPKPR MFRLPEARALINRLGFNNEGLDAFIANVRRSQVRAQGKPLLLGLNIGKNAATPIEQAT GDYLACLEGVYPHADYVTVNISSPNTQNLRALQSDEALDALLGAIADHREKLAAAQGR RVPIFVKIAPDLNEAQVAVIAATLTRHGMDGVVATNTTIARDAVQGLPHAGEAGGLSG APVREASNAVIRQLRAALGPAFPIVGVGGVMSAEDAVGKIRAGADVVQIYTGLIYEGP ALVSRAARAIRAMR" misc_feature complement(2263774..2264778) /locus_tag="Alide_2219" /note="Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD...; Region: DHOD_2_like; cd04738" /db_xref="CDD:73400" misc_feature complement(order(2264491..2264493,2264740..2264742)) /locus_tag="Alide_2219" /note="quinone interaction residues [chemical binding]; other site" /db_xref="CDD:73400" misc_feature complement(2263768..2264661) /locus_tag="Alide_2219" /note="Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]; Region: PyrD; COG0167" /db_xref="CDD:30516" misc_feature complement(order(2263825..2263830,2263891..2263893, 2263978..2263980,2264041..2264049,2264131..2264133, 2264251..2264253,2264257..2264259,2264266..2264268, 2264452..2264460,2264464..2264466,2264539..2264541, 2264599..2264601,2264611..2264613)) /locus_tag="Alide_2219" /note="active site" /db_xref="CDD:73400" misc_feature complement(order(2264131..2264133,2264257..2264259, 2264599..2264601)) /locus_tag="Alide_2219" /note="catalytic residues [active]" /db_xref="CDD:73400" misc_feature complement(order(2263825..2263830,2263891..2263893, 2263978..2263980,2264044..2264049,2264131..2264133, 2264266..2264268,2264464..2264466,2264539..2264541)) /locus_tag="Alide_2219" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73400" misc_feature complement(order(2264041..2264046,2264260..2264262, 2264266..2264268,2264464..2264466)) /locus_tag="Alide_2219" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73400" gene 2264841..2265530 /locus_tag="Alide_2220" /db_xref="GeneID:10104276" CDS 2264841..2265530 /locus_tag="Alide_2220" /EC_number="5.3.1.6" /inference="protein motif:TFAM:TIGR00021" /note="TIGRFAM: ribose 5-phosphate isomerase; KEGG: ajs:Ajs_2131 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase" /codon_start=1 /transl_table=11 /product="ribose 5-phosphate isomerase" /protein_id="YP_004126844.1" /db_xref="GI:319762907" /db_xref="GO:0004751" /db_xref="InterPro:IPR004788" /db_xref="InterPro:IPR020672" /db_xref="GeneID:10104276" /translation="MTAPTSLSQDELKTLVGRAALDYVVPGEIVGVGTGSTVNKFIDA LATVKERIGGAVSSSEASTARLKALGIPVLDANEVASLSVYIDGADEIDGRGYMVKGG GAALTREKIVAALAQRFVCIADESKLVSVLGAFPLPVEVIPMAASQIARRFESLGGQA TLRLRDGRPLVTDNGQHILDVRGLAIGDPLAFESEVNQWPGVVTVGVFARQKAHVCLL GTAQGVRTLKF" misc_feature 2264874..2265500 /locus_tag="Alide_2220" /note="RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398" /db_xref="CDD:73164" misc_feature order(2264940..2264942,2265018..2265020,2265027..2265032, 2265057..2265059,2265063..2265065,2265144..2265149, 2265327..2265332,2265351..2265353,2265357..2265359, 2265369..2265371) /locus_tag="Alide_2220" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:73164" misc_feature order(2264940..2264942,2264946..2264951,2265099..2265104, 2265108..2265110,2265138..2265149,2265165..2265167, 2265219..2265221) /locus_tag="Alide_2220" /note="active site" /db_xref="CDD:73164" misc_feature order(2265066..2265068,2265078..2265080,2265162..2265164, 2265183..2265185,2265267..2265272,2265276..2265284, 2265291..2265293,2265429..2265434,2265447..2265449) /locus_tag="Alide_2220" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73164" gene complement(2265527..2266168) /locus_tag="Alide_2221" /db_xref="GeneID:10104277" CDS complement(2265527..2266168) /locus_tag="Alide_2221" /inference="protein motif:PFAM:PF00462" /note="PFAM: glutaredoxin; KEGG: dia:Dtpsy_1652 glutaredoxin" /codon_start=1 /transl_table=11 /product="glutaredoxin" /protein_id="YP_004126845.1" /db_xref="GI:319762908" /db_xref="GO:0009055" /db_xref="GO:0015035" /db_xref="InterPro:IPR002109" /db_xref="GeneID:10104277" /translation="MTFIRHAAAAAACTLLALAAQAQQVYRIVGPDGRVTFSDRPPAA GAEAAPVGAGAQGSGGSEALPYQLRQIAARFPVTLYTGSDCAPCDSARNLLVSRGVPF TERTVGSNEDIEALRRLSGESSLPFGTIGGQQLKGFSDSEWSQYLDAAGYPRQSQLPP GYRRPPATPLVAVQARPAVPEAESAPAAPAARPAAPATPPTGRTPANPAGIVF" sig_peptide complement(2266100..2266168) /locus_tag="Alide_2221" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 23" misc_feature complement(2265728..2265943) /locus_tag="Alide_2221" /note="NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide...; Region: NrdH; cd02976" /db_xref="CDD:48525" misc_feature complement(order(2265905..2265907,2265914..2265916)) /locus_tag="Alide_2221" /note="catalytic residues [active]" /db_xref="CDD:48525" gene complement(2266290..2268323) /locus_tag="Alide_2222" /db_xref="GeneID:10104278" CDS complement(2266290..2268323) /locus_tag="Alide_2222" /EC_number="3.4.24.70" /inference="protein motif:PRIAM:3.4.24.70" /note="KEGG: ajs:Ajs_2129 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F" /codon_start=1 /transl_table=11 /product="oligopeptidase a" /protein_id="YP_004126846.1" /db_xref="GI:319762909" /db_xref="InterPro:IPR001567" /db_xref="GeneID:10104278" /translation="MNNPLLDFSGHIPFDRITPADVAPAVDRLLERANAALETVTQPD FPARWDSIARVLDVATEELGRSFGAVSHLSSVADTPELRAAYNAALPRVTEFWTRLGA DERLYAKYKAIDPATLNAEQRQALGNAMRNFRLSGAELQGAAKQRFAAIQERQAELQQ KFSENVLDATDAFAYYASADELEGVPADVVQAARAAAEGEGKEGYKLTLKMPCYLPVM QFARSSALRETLYHAYVTRASDQAAGDAVRFDNSAVMAEILALRQEEARLLGYDNFGQ VSLVPKMAHTPEQVTHFLRDLARRARPFAEKDVADLRAFAAEQLNLPDPQPWDWPYVS EKLKEARYAFSEQEVKQYFPAPKVLAGLFKIVETLFEVAIRPDQAPVWNPAVEFYRIE RGGQLVGQFYLDQPARNAKRGGAWMDDARTRWLRPDTGQLQTPVAHLVCNFAEGVQGR PPLLTHDDVITLFHEFGHGLHHMLTQVNERDVSGISGVEWDAVELPSQFMENFCWEWE VLRHMTAHVETGEPLPRALYDKMIAAKNFQAGMQTLRQIEFALFDMLLHTGHDPKDDP LPLLESVRDEVAVLRPPAFSRTPHSFSHIFAGGYAAGYYSYKWAEVLSADAYAAFEET AGEDGMPDIGTGRRYRQSILEAGGSRPAMESFKAFRGREPTLDALLRHQGMAS" misc_feature complement(2266296..2268323) /locus_tag="Alide_2222" /note="Zn-dependent oligopeptidases [Amino acid transport and metabolism]; Region: Dcp; COG0339" /db_xref="CDD:30687" misc_feature complement(2266299..2268266) /locus_tag="Alide_2222" /note="Peptidase family M3 dipeptidyl carboxypeptidase (DCP); Region: M3A_DCP; cd06456" /db_xref="CDD:188995" misc_feature complement(order(2266503..2266505,2266512..2266514, 2266524..2266532,2266542..2266547,2266563..2266568, 2266686..2266688,2266833..2266835,2266842..2266844, 2266920..2266922,2266929..2266934,2267073..2267081)) /locus_tag="Alide_2222" /note="active site" /db_xref="CDD:188995" misc_feature complement(order(2266842..2266844,2266920..2266922, 2266932..2266934)) /locus_tag="Alide_2222" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188995" gene complement(2268361..2269209) /locus_tag="Alide_2223" /db_xref="GeneID:10104279" CDS complement(2268361..2269209) /locus_tag="Alide_2223" /EC_number="1.5.1.5" /inference="protein motif:PRIAM:1.5.1.5" /note="KEGG: dac:Daci_3983 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain" /codon_start=1 /transl_table=11 /product="methylenetetrahydrofolate dehydrogenase (nadp(+))" /protein_id="YP_004126847.1" /db_xref="GI:319762910" /db_xref="InterPro:IPR000672" /db_xref="InterPro:IPR020630" /db_xref="InterPro:IPR020631" /db_xref="InterPro:IPR020867" /db_xref="GeneID:10104279" /translation="MTAQLIDGNALSRQLRAQVAQRTQALKARGITPGLAVVLVGDNP ASQVYVRNKVKACEDVGFHSVLEKYDASMTEAELLARVEALNNDPAIHGILVQLPLPK HIDDHKVIEAISPLKDVDGFHVASAGALMVGEVGFKACTPYGCMKMLESIGMKDLRGK HAVVIGRSNIVGKPMAMMLLAANATVTICHSGTADLAAMTRQADIVVAAVGKRGVLTA DMVKPGAVVIDVGMNRNDEGKLCGDVDFDGVKEVAGYITPVPGGVGPMTITMLLVNTL EAAERL" misc_feature complement(2268367..2269209) /locus_tag="Alide_2223" /note="bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional; Region: PRK14189" /db_xref="CDD:184559" misc_feature complement(2268850..2269200) /locus_tag="Alide_2223" /note="Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763" /db_xref="CDD:189708" misc_feature complement(2268370..2268867) /locus_tag="Alide_2223" /note="NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080" /db_xref="CDD:133448" misc_feature complement(order(2268604..2268606,2268631..2268636, 2268640..2268642,2268646..2268663,2268670..2268672, 2268679..2268684,2268709..2268711,2268727..2268729, 2268733..2268735,2268826..2268828,2268835..2268840)) /locus_tag="Alide_2223" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:133448" misc_feature complement(order(2268409..2268411,2268418..2268420, 2268514..2268516,2268520..2268522,2268565..2268567, 2268574..2268576,2268580..2268582,2268637..2268642, 2268706..2268711,2268787..2268789)) /locus_tag="Alide_2223" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:133448" misc_feature complement(order(2268406..2268408,2268427..2268432)) /locus_tag="Alide_2223" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133448" gene complement(2269292..2269918) /locus_tag="Alide_2224" /db_xref="GeneID:10104280" CDS complement(2269292..2269918) /locus_tag="Alide_2224" /inference="protein motif:PFAM:PF00072" /note="KEGG: ctt:CtCNB1_2245 two component transcriptional regulator, LuxR; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004126848.1" /db_xref="GI:319762911" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:10104280" /translation="MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRCFDSAESFL TRYDPREVACLIVDIRMGGMTGLELQDRLVERKSPLPIVFITGHGDVPMAVNTMKKGA LDFIQKPFDEEELLGLVERMLDRAREAFAGHQQAASRDALLSKLTGREAQVLERIVAG RLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIALGQQAAKA" misc_feature complement(2269316..2269894) /locus_tag="Alide_2224" /note="Response regulator [Signal transduction mechanisms]; Region: TtrR; COG4566" /db_xref="CDD:34204" misc_feature complement(2269550..2269885) /locus_tag="Alide_2224" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2269592..2269597,2269604..2269606, 2269661..2269663,2269721..2269723,2269745..2269747, 2269874..2269879)) /locus_tag="Alide_2224" /note="active site" /db_xref="CDD:29071" misc_feature complement(2269745..2269747) /locus_tag="Alide_2224" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2269721..2269729,2269733..2269738)) /locus_tag="Alide_2224" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2269589..2269597) /locus_tag="Alide_2224" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2269316..2269483) /locus_tag="Alide_2224" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature complement(order(2269340..2269342,2269373..2269387, 2269391..2269396,2269400..2269405,2269427..2269435, 2269472..2269480)) /locus_tag="Alide_2224" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature complement(order(2269316..2269318,2269325..2269327, 2269334..2269342,2269433..2269435,2269439..2269441, 2269445..2269447)) /locus_tag="Alide_2224" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene complement(2269915..2272467) /locus_tag="Alide_2225" /db_xref="GeneID:10104281" CDS complement(2269915..2272467) /locus_tag="Alide_2225" /inference="protein motif:TFAM:TIGR00229" /note="TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dia:Dtpsy_1656 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="pas sensor protein" /protein_id="YP_004126849.1" /db_xref="GI:319762912" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10104281" /translation="MDPAETSAPPAASAVKAPARWWRSWWRSLSPGRQDRFAALAPLA SVLMFMAAIAVSFWYLRTEEIEREKEALKRDVEYAQQRVRLRLLERQEQVMRIARDLS NGDLTRSDFVGRAEALISQYPELQAITWIDERRRIRASHAAPTVTSNQLRVSGEVLKT GEAADLFRLARDMQQPVYSQPEAGSDDAAPLLQLQVPLSPQGKFGGVVLAEYSIDSLL RYATPTEVLARYAVTLIDGQGRTLAGTPLAPRHNALLPWTTRANEYEIPVSPVGNGLV LRAQAYRTSLGMVGSGLFWLVGTLSAMTTWMLIATWRHTRRRMQAQQALVAETNFRRA MENSILTGMRALDLEGRITYVNAAFCQMTGWTQEELIGQTPPYSYWPEAEYEKLHANL REELSGKTVPGGFQVRVRRKSGTLFDARLYVSPLIDARGQQTGWMTSMTDITEPNRVR EQLTASHERFTIVLEALDASVSVAPLGSQELLFANRLYRQWFGSQTSGHLEMVAQAGV LPAHGGGVDGHEDDSLMGLLASDPLAHAHSENAEIYRPDLGKWLEVRSRYLNWVDGRL AQMVIATDITPRRQAEELAARQAERAESVSRLITMGEMASSVAHELNQPLTAISNYCS GMVSRIQGGQLSEEALLAALKKTAHQAQRAGQIIQRIRAFVKKSEPNRTLADVHEMVS EALELASIELRRHNVRLTHYVAARLPQVMADTILIEQVLINLMKNGAESIAQAQRPPA LRSVELRVVPRQVDGCDVIEFSVQDTGRGLAPEVLAHLFEAFFSTKSEGMGIGLNLCR SIVESHHGRMHAENLYNADEVTGCRFSFWLPLANTAETTINSAATSTPGTIA" misc_feature complement(2271109..2271486) /locus_tag="Alide_2225" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(2271139..2271447) /locus_tag="Alide_2225" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(2271226..2271228,2271241..2271243, 2271322..2271333,2271373..2271375,2271391..2271393, 2271403..2271405)) /locus_tag="Alide_2225" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(2271199..2271201,2271205..2271207, 2271292..2271297,2271304..2271306,2271328..2271330, 2271340..2271342)) /locus_tag="Alide_2225" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(<2270554..2270670) /locus_tag="Alide_2225" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2270602..2270604,2270611..2270613, 2270623..2270625,2270632..2270634,2270644..2270646, 2270656..2270658)) /locus_tag="Alide_2225" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2270638..2270640) /locus_tag="Alide_2225" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2269984..2270319) /locus_tag="Alide_2225" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2269996..2269998,2270002..2270007, 2270032..2270034,2270038..2270040,2270086..2270097, 2270158..2270163,2270167..2270169,2270173..2270175, 2270179..2270181,2270278..2270280,2270287..2270289, 2270299..2270301)) /locus_tag="Alide_2225" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2270287..2270289) /locus_tag="Alide_2225" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2270089..2270091,2270095..2270097, 2270161..2270163,2270167..2270169)) /locus_tag="Alide_2225" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 2272664..2275360 /locus_tag="Alide_2226" /db_xref="GeneID:10104282" CDS 2272664..2275360 /locus_tag="Alide_2226" /inference="protein motif:TFAM:TIGR00759" /note="KEGG: dia:Dtpsy_1657 pyruvate dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: Transketolase domain-containing protein" /codon_start=1 /transl_table=11 /product="2-oxo-acid dehydrogenase e1 subunit, homodimeric type" /protein_id="YP_004126850.1" /db_xref="GI:319762913" /db_xref="GO:0016491" /db_xref="InterPro:IPR004660" /db_xref="InterPro:IPR005474" /db_xref="GeneID:10104282" /translation="MSDPTKGLGASDIDQQETREWLEALSAVIEKEGPERAHFLLEQL LEQARQSSIDLPFSANTGYVNTIEPDQEARCPGNIAIEKRLRAYMRWNAMAMVVRANR LHPHDGGDLGGHIGSFASLASMWGAGFNHFWHAESEGHGGDCIYFQGHSAPGIYARAY LEGRITEEQLENFRQEVGGKGLSSYPHPKLMPGFWQFPTVSMGLGPMMAIYQARFLKY LHARGIAKTDNRKVWVFLGDGEMDEPESKGAISLAARENLDNLIFVINCNLQRLDGPV RGNGKIIQELEGDFRGAGWHVIKLLWGKGWDELLARDKSGKLKQVMMETLDGDYQTYR AMDGAYIRKHFFGKYPETLKLVEHLSDDEIWELRRGGHEPEKVYAAFHAANAHQGQPT VLLVKTVKGYGMGKAGEAKNTVHQTKKLDDEDIRYIRDRFNIPIPDSELDKLPYYKPA DDTPEMKYLHERRQALGGYLPHRRTHADESFTVPALDTFKAILEPTAEGREISTTQAY VRFLTQLLRDKALGPRVVPILVDEARTFGMEGLFRQIGIYNPLGQRYTPVDRDQVMYY KEDVAGQILQEGINEAGGMCSWIAAATSYSTNNRIMIPFFVYYSMFGFQRFGDFAWAA GDMQARGFILGGTSGRTTLNGEGLQHEDGHSHILSSTIPNCVSYDPTFAHEVGVIMQH GLKRMVEKQENVFYYITLLNENYPMPGLAAGTEEQILKGMYLCKAGAQGELRVQLLGS GSILRESLEAQKLLATDWGVQADVWSCTSFTELAREGQDTARWNLLHPLEAPRPSFVS QQLADHGGPVVASTDYMKAFAEQIRAFIPAGRSYTVLGTDGFGRSDFRYRLREHFEVN RHYIAVAALKSLADEGRLPAAKVAEAIAKYGIDADKINPLHA" misc_feature 2272697..2275357 /locus_tag="Alide_2226" /note="pyruvate dehydrogenase subunit E1; Reviewed; Region: aceE; PRK09405" /db_xref="CDD:181825" misc_feature 2272901..2274067 /locus_tag="Alide_2226" /note="Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative...; Region: TPP_E1_EcPDC_like; cd02017" /db_xref="CDD:48180" misc_feature order(2272976..2272984,2273183..2273194,2273213..2273218, 2273222..2273224,2273228..2273230,2273255..2273257, 2273261..2273269,2273387..2273398,2273405..2273407, 2273414..2273416,2273426..2273428,2273474..2273482, 2273492..2273494,2273516..2273518,2273525..2273530, 2273537..2273539) /locus_tag="Alide_2226" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48180" misc_feature order(2273012..2273014,2273105..2273107,2273111..2273113, 2273261..2273263,2273267..2273269,2273375..2273383, 2273390..2273392,2273465..2273467,2273471..2273473, 2273861..2273863) /locus_tag="Alide_2226" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48180" gene 2275379..2277028 /locus_tag="Alide_2227" /db_xref="GeneID:10104283" CDS 2275379..2277028 /locus_tag="Alide_2227" /inference="protein motif:TFAM:TIGR01348" /note="KEGG: dia:Dtpsy_1658 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase" /protein_id="YP_004126851.1" /db_xref="GI:319762914" /db_xref="GO:0004742" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR001078" /db_xref="InterPro:IPR003016" /db_xref="InterPro:IPR004167" /db_xref="InterPro:IPR006256" /db_xref="GeneID:10104283" /translation="MALIQIQVPDIGDFDEVGVIELLVKPGDQVAAEQSLITVESDKA SMEIPSSHAGVVKALTVKLGDKVKQGSVIAELETADAAASEPKPAPAPASQAPAAAES IAPAAAPAAPAAGGRIEVRVPDIGDFKDVAVIELLVKPGDNIRVEQSLFTVESDKASM EIPSPAAGVLKELKVQLGDKVNIGDLVAVLEGAAPAAPAAPAPAPAPAAAPAAPVAAA AAAPAPAQSAPAHDPTAAPSGRLPHASPSVRKFARELGVPLAELKGTGPKGRITAEDV QSFTRAVMSGAVQTQAQAAKAPAGGGSGVGMDLLPWPKVDFSKFGVIERKDLSRIKKI SGANLHRNWVMIPHVTNNDEADITELEAFRVSTNKENEKSGVKVTMLAFVIKAVVAAL KKFPEFNTSLDGDTLVYKSYYHIGFAADTPNGLVVPVLKDADKKGILQISQEMSELAK KARDGKLGAADMQGGCMSISSLGGIGGTHFTPIINAPEVAILGLSKGQMKPVWDGKQF VPRLTLPLSLSYDHRVIDGAAAARFNAYLGQVLADYRRILL" misc_feature 2275379..2277025 /locus_tag="Alide_2227" /note="dihydrolipoamide acetyltransferase; Reviewed; Region: PRK11855" /db_xref="CDD:183338" misc_feature 2275388..2275606 /locus_tag="Alide_2227" /note="Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849" /db_xref="CDD:133458" misc_feature order(2275475..2275477,2275496..2275513,2275523..2275525) /locus_tag="Alide_2227" /note="E3 interaction surface; other site" /db_xref="CDD:133458" misc_feature 2275505..2275507 /locus_tag="Alide_2227" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133458" misc_feature 2275730..2275948 /locus_tag="Alide_2227" /note="Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849" /db_xref="CDD:133458" misc_feature order(2275817..2275819,2275838..2275855,2275865..2275867) /locus_tag="Alide_2227" /note="E3 interaction surface; other site" /db_xref="CDD:133458" misc_feature 2275847..2275849 /locus_tag="Alide_2227" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133458" misc_feature 2276102..2276212 /locus_tag="Alide_2227" /note="e3 binding domain; Region: E3_binding; pfam02817" /db_xref="CDD:111687" misc_feature 2276348..2277025 /locus_tag="Alide_2227" /note="2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; cl02008" /db_xref="CDD:194225" gene 2277042..2278871 /locus_tag="Alide_2228" /db_xref="GeneID:10104284" CDS 2277042..2278871 /locus_tag="Alide_2228" /inference="protein motif:TFAM:TIGR01350" /note="KEGG: dia:Dtpsy_1659 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; biotin/lipoyl attachment domain-containing protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region" /codon_start=1 /transl_table=11 /product="dihydrolipoamide dehydrogenase" /protein_id="YP_004126852.1" /db_xref="GI:319762915" /db_xref="GO:0004148" /db_xref="GO:0050660" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR000815" /db_xref="InterPro:IPR003016" /db_xref="InterPro:IPR004099" /db_xref="InterPro:IPR006258" /db_xref="InterPro:IPR012999" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10104284" /translation="MAVIDIKVPDIGDFAEVGVIEVLVQVGDTIKAEQSLVTVESDKA SMEIPSSHAGVVKELKVKLGDKVAEGSVLLTLEVAEGAAAPAAAPVQEKPAPAPASQA PAAPVAIASSFGGTADVECDVLVLGGGPGGYSAAFRAADLGLKVVIVERYATLGGVCL NVGCIPSKALLHVAAVMDEVSHLKSAGIDFGAPQVNVDSLRGHKEKVIGKLTGGLAAM AKMRKVTVVRGYGSFVGANHVEVEETTGGGQDKTGGKKVVAFQRAIIAAGSQAVRLPF MPDDPRVVDSTGALALAGVPKRMLILGGGIIGLEMGTVYSTLGARLDVVEMLDGLMQG ADRDLVKVWQKMNAHRFDNIMLKTKTVGAEATPEGIKVTFAPAEEGGTAPEPQTYDLV LQAVGRTPNGRKIGAEKAGVAVTDRGFINVDIQMRTNVPHIFAIGDIVGQPMLAHKAV HEAHVAAEVIAGELQGDKALASAAFNARVIPSVAYTDPEVAWVGLTEDQAKAQGIKVK KGLFPWTASGRAIANGRDEGYTKLLFDDSPEAHGHGRILGGGIVGTHAGDMIGEIALA IEMGADAVDIGKTIHPHPTLGESIGMAAEIAHGSCTDVPPQRK" misc_feature 2277051..2277269 /locus_tag="Alide_2228" /note="Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849" /db_xref="CDD:133458" misc_feature order(2277138..2277140,2277159..2277176,2277186..2277188) /locus_tag="Alide_2228" /note="E3 interaction surface; other site" /db_xref="CDD:133458" misc_feature 2277168..2277170 /locus_tag="Alide_2228" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133458" misc_feature 2277387..>2277512 /locus_tag="Alide_2228" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 2277405..2278868 /locus_tag="Alide_2228" /note="dihydrolipoamide dehydrogenase; Reviewed; Region: PRK06467" /db_xref="CDD:180579" misc_feature 2278479..2278823 /locus_tag="Alide_2228" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene 2279023..2279304 /locus_tag="Alide_2229" /db_xref="GeneID:10104285" CDS 2279023..2279304 /locus_tag="Alide_2229" /inference="similar to AA sequence:KEGG:KLTH0B01034g" /note="KEGG: lth:KLTH0B01034g KLTH0B01034p" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126853.1" /db_xref="GI:319762916" /db_xref="GeneID:10104285" /translation="MKSNLALILLAGLPALCNAQQVPAIPGGLPRDPGPSAQRPDIPR NPGSDQEALMQQRLLINSQTDAIKELAQQLKLLEQRVKKLEDKGASNGH" sig_peptide 2279023..2279082 /locus_tag="Alide_2229" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 20" gene 2279294..2279668 /locus_tag="Alide_2230" /db_xref="GeneID:10104286" CDS 2279294..2279668 /locus_tag="Alide_2230" /inference="similar to AA sequence:KEGG:MGG_07539" /note="KEGG: mgr:MGG_07539 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126854.1" /db_xref="GI:319762917" /db_xref="GeneID:10104286" /translation="MAIEDALAAMDKAQNAFNQTVASASGSSVQPWSESLVKYLSISV LGFMMISLILCTTLLWRRNAEASEILRIFGILSIVGLSALLLITGFSNEQLTPIVGLF GAIAGYLLGKDAKPSGSGSTKV" misc_feature 2279378..>2279560 /locus_tag="Alide_2230" /note="Predicted membrane protein (DUF2214); Region: DUF2214; cl01427" /db_xref="CDD:194133" gene 2280168..2281136 /locus_tag="Alide_2231" /db_xref="GeneID:10104287" CDS 2280168..2281136 /locus_tag="Alide_2231" /inference="similar to AA sequence:KEGG:Aave_2466" /note="KEGG: aav:Aave_2466 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126855.1" /db_xref="GI:319762918" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104287" /translation="MFKKIAVAMTAALAFSGAAFAAWPERPVTLVVPFPPGQATDIFA RALAERLGPRLGQAIVVENKAGAGSNIGSEQVVRAKPDGYTLLVAGSAMAVNQTLYRK VNFDPRKDLQGITLVAKVPLVFLAHPGSGIKSMRDLVARARAEPGKLSYASAGIGGTQ HLSAEMVKARAKIEIEHIPYKGSGPAQADFIGGQVPLMVDSVTAGLANIQAGKAVPLG VTSSTRSSQLPDVPTIAESGLPEFKGFEAVGWLGLMAPKGTPQAIIDTLNREAVGILR SAEMQKFIRDRGSEPTPTTPQEMDQFVASEIAEWGKAVKQSGASVD" sig_peptide 2280168..2280233 /locus_tag="Alide_2231" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" misc_feature 2280234..2281121 /locus_tag="Alide_2231" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 2280297..2281124 /locus_tag="Alide_2231" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2281203..2282633 /locus_tag="Alide_2232" /db_xref="GeneID:10104288" CDS 2281203..2282633 /locus_tag="Alide_2232" /inference="protein motif:PFAM:PF02661" /note="PFAM: filamentation induced by cAMP protein Fic; KEGG: pna:Pnap_3558 filamentation induced by cAMP protein Fic" /codon_start=1 /transl_table=11 /product="filamentation induced by camp protein fic" /protein_id="YP_004126856.1" /db_xref="GI:319762919" /db_xref="InterPro:IPR003812" /db_xref="GeneID:10104288" /translation="MSPPADTANPPASPHLLLRALRGAGPQGASVAQLLAQLPGVPRR TAQRWLAQCVEAGQARAIGAGRGRRYVAVRAMPPPAAVHQVRESAESSWSTDGLPSGL ALSPEGREVWAYVSQPLTARAPVGYQRDWIDGYVPGRIFYLPEPVRRQLHAMGRTPDE QAPAGTYSRAVLDRLLIDLSWASSHLEGNTYSRLDTRELIRHGTAAEGKARIETQMIL NHKAAIELLVDASAQPGPPFSRYLLMNLHATLAENLLPNPADEGRVRQHAVDIGQSVF RPLDAPQVLDELVDVLIAKANAIADPFEQAFFMMVHLPYLQPFADINKRTSRLAANLP LFRANLCPLTFVDVPPELYARAMLGVCEMGRVELLRDLLVWAYERSTQEYVAIRQTLA EPDPLRLAWRQLIKDTVHAVVTRPGADAVGLVKQAVAAHVPGPERAAVQALILDELRR LHEGVLARYRLRPGQWRDWIAAQGCY" misc_feature 2281629..>2282282 /locus_tag="Alide_2232" /note="Fic family protein [Function unknown]; Region: COG3177" /db_xref="CDD:32990" misc_feature 2281911..2282207 /locus_tag="Alide_2232" /note="Fic/DOC family; Region: Fic; cl00960" /db_xref="CDD:193989" gene 2282693..2283592 /locus_tag="Alide_2233" /db_xref="GeneID:10104289" CDS 2282693..2283592 /locus_tag="Alide_2233" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_0879 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126857.1" /db_xref="GI:319762920" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10104289" /translation="MKRTRLPSTATLAAFECAARHLNFRRAADELHLTQGAVSQQVRL LEAQLGVALFARVRQRVLLTSAGERYLREVRRILRELGEVTHQAMASGDKELLNLAAV PTFAVKWLVPRLPGFFAAHGHVSLNLVSRSAPFNFDAEPFDAAIHYGEPSWPGAVCTP LFEEDMRPVCSAHYRRLLDLRTPADLARATLLQQFTRPSAWQDWFAHVQAEPANAFQG PRFDSFNMILEAVQVHMGAALLPRFLVAGGIARGELVELSPRGLPSTRGYHLVCPEAR QDAPAVAALRGWLLDEVAASLAG" misc_feature 2282705..2283577 /locus_tag="Alide_2233" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature 2282726..2282896 /locus_tag="Alide_2233" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2282978..2283559 /locus_tag="Alide_2233" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators GcdR-like, contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_like; cd08481" /db_xref="CDD:176170" misc_feature order(2282978..2283001,2283005..2283058,2283062..2283082) /locus_tag="Alide_2233" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176170" misc_feature order(2282996..2283001,2283005..2283007,2283356..2283364, 2283422..2283424) /locus_tag="Alide_2233" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176170" gene 2283699..2284400 /locus_tag="Alide_2234" /db_xref="GeneID:10104290" CDS 2283699..2284400 /locus_tag="Alide_2234" /inference="protein motif:PFAM:PF03737" /note="PFAM: Dimethylmenaquinone methyltransferase; KEGG: cai:Caci_5818 dimethylmenaquinone methyltransferase" /codon_start=1 /transl_table=11 /product="dimethylmenaquinone methyltransferase" /protein_id="YP_004126858.1" /db_xref="GI:319762921" /db_xref="InterPro:IPR005493" /db_xref="GeneID:10104290" /translation="MSSPHPTDRRWKKPLTPFIFHRDFERPDAGDVATLAGADVTRVS DLAGRMYTCHPSVHSLTATAMPMCGPAFTVKCPPGDNLGVMAAVRAVGWGDVLVVDGQ GFTEWCMGGFELLRYARDARGMAGLLVHGAWRDVQEAQAQGLPVYGLAVSPFSGPKLG PAEVNVPVSCGGVVIAPGDVVCASAEGVAVVPRASVAAVARALRAGPGGHGIEDFLQE MDGHVAGWLQDGRGA" misc_feature 2283759..>2284259 /locus_tag="Alide_2234" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene 2284397..2285761 /locus_tag="Alide_2235" /db_xref="GeneID:10104291" CDS 2284397..2285761 /locus_tag="Alide_2235" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD family protein; KEGG: rsh:Rsph17029_3583 MmgE/PrpD family protein" /codon_start=1 /transl_table=11 /product="mmge/prpd family protein" /protein_id="YP_004126859.1" /db_xref="GI:319762922" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10104291" /translation="MSGSGLTRALAAFVAGLRTEHVPPAARQEACRAMADCLGGAVAG ARDEVARIAAATQARPGGACILWGTGLRADVHDAALVNGCAAHAHALDDTHESMRGHP SAPLVPAILAVGELVDAGGDDLATAYIAGAEVACRLGRSVNDRHSQLGWHTTGTLGPV GAAAACAWLLRLDAGRTAHALGIAASMAGGLRVNFGTMAKALHAGMAAQHGVQAARLA AGGMTASTAALEGHEGFLQLFCDDGSQDAARALRGLGRHFEVLTPGIVYKQYPTCSLM HALIDMVLQARAQGLLTPADGLELRCAISQRLEAVRGKDWPATGLAAKFCVEYCVAVA VQEGSQGIADFTDAAIHRPGLRELAQRVRLSQGQDFPPGNGDCAELVVLRDGREVLRR RQAKPCGHPSMPLSPAQHEAKFMACAAPVLGTAKARRLLQALHSPQPCSARELARALA LPCA" misc_feature 2284415..2285689 /locus_tag="Alide_2235" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene 2285779..2286768 /locus_tag="Alide_2236" /db_xref="GeneID:10104292" CDS 2285779..2286768 /locus_tag="Alide_2236" /inference="similar to AA sequence:KEGG:Reut_B3949" /note="KEGG: reu:Reut_B3949 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126860.1" /db_xref="GI:319762923" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10104292" /translation="MFSAMPSISRRRLLLAAAAAPLAAHAGLAQAQGKETSIIVGYPP GGSLDAMARVLAQRLGALRGQPVIVDNKPGFSGNIGAQFVAKSRPDGSTLLMTALTTY AINQKLMGPSMGYDLLKDFQHVAIVGYLPNVLIVPTVLGVNTLQDFIKAAKARPGGLS IATTGNGSLEHIAGEMFKRATGTDMLAVPYKGSTPGVTDLIGGQIQAMFVNTTTAINN LKTGRIKALAIAGPSRVAALPGVPTLAEQGVKMSNDVVSIFGIAAPAATPAPMVEKLN ADLNAVLREPEVNARFSGLGVEVVTESADHARERIAREVATWDKVIRETGIAL" sig_peptide 2285779..2285874 /locus_tag="Alide_2236" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.921 at residue 32" misc_feature 2285878..2286759 /locus_tag="Alide_2236" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 2285929..2286759 /locus_tag="Alide_2236" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2286886..2287827 /locus_tag="Alide_2237" /db_xref="GeneID:10104293" CDS 2286886..2287827 /locus_tag="Alide_2237" /inference="similar to AA sequence:KEGG:Dtpsy_1661" /note="KEGG: dia:Dtpsy_1661 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126861.1" /db_xref="GI:319762924" /db_xref="GeneID:10104293" /translation="MQALLDAIAAMPPPGDARRIFHGRGGLHPGCEQWTLDAYPPVFV LTSFAPVDEGQLAAVGDALRARWAQLAPGELLHWVFQHRGEALRLQGRSDTRLMAGGV PDPHVVTEGGLRFRVHVLSGQNHGLFLDMAEGRRWVREWATDFKAREGRGARVLNLFA YTCAFSVAALAGGAAQVVNVDMGRGAIATGQQNHRLNGLDGASFLAHDIFASWGRIAR GGPYDLVIADPPSYQKGSFVAAKDYARVVRRLPGLLAPGGHALLCLNAPELGEGFVRG LVDDLAPPLAFAGRVPNPAAFADVDGGRALKVLVFRA" misc_feature 2286937..2287821 /locus_tag="Alide_2237" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(2287957..2288390) /locus_tag="Alide_2238" /pseudo /db_xref="GeneID:10104294" gene 2288487..2289371 /locus_tag="Alide_2239" /db_xref="GeneID:10104295" CDS 2288487..2289371 /locus_tag="Alide_2239" /inference="protein motif:PFAM:PF03446" /note="PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ajs:Ajs_2093 6-phosphogluconate dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="6-phosphogluconate dehydrogenase nad-binding protein" /protein_id="YP_004126862.1" /db_xref="GI:319762925" /db_xref="GO:0004616" /db_xref="InterPro:IPR006115" /db_xref="InterPro:IPR006183" /db_xref="GeneID:10104295" /translation="MNTPRIGLVGVGLMGHGIALNIARKGHALTVLEHPGNQPLDELR ALGVASAATVQDLARQVQVLILCVTGSPQVEAVLLGEQGALATLQPGTVVIDCSTAIP ASTESVARAVTAAGGRFLDAPMTRTPREAAEGRLNLLVGGDAQLLQECLPLLQCFAEN ITHTGAVGSGHRMKLLHNYVSLGSVALIAEAAACALAAQVSPQVFVDVLAKGGGGGVA LERLRPYLLQQDPSGLRFFMSNALKDMGYYTTMAQDGAAAHGIAQAVHDTFASAVAEG GPQRLVPELVAILGKNTL" misc_feature 2288499..2289353 /locus_tag="Alide_2239" /note="3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084" /db_xref="CDD:32267" misc_feature 2288499..>2289020 /locus_tag="Alide_2239" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(2289375..2290145) /locus_tag="Alide_2240" /db_xref="GeneID:10104296" CDS complement(2289375..2290145) /locus_tag="Alide_2240" /inference="similar to AA sequence:KEGG:RPC_0065" /note="KEGG: rpc:RPC_0065 OmpA/MotB" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126863.1" /db_xref="GI:319762926" /db_xref="GeneID:10104296" /translation="MGGDPARLPRREDGGPIQLKTRATPAAYGGGAGAAPCAPPPPGG ARTGSAAMTMVDPVSLANEPLLAAIAWSYLAINSTRIVTYVPQIVAGRLALHRRRASD LAADLGLLGGFALQRPGLRHAGAARRVLRRDHDDQPAGLLQRHRHRGRAPLAPAPPPA SCADGPGRVQHAAPSARLDGHGTPARDGPRGRSGSGAVAAGALGARPRQGHDRAADGP AVDGRPAPARCAPTRPWACPTPARGAALGPDPAPALSG" gene complement(2290088..2290594) /locus_tag="Alide_2241" /db_xref="GeneID:10104297" CDS complement(2290088..2290594) /locus_tag="Alide_2241" /inference="protein motif:PFAM:PF01878" /note="PFAM: protein of unknown function DUF55; KEGG: aav:Aave_2834 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126864.1" /db_xref="GI:319762927" /db_xref="InterPro:IPR002740" /db_xref="GeneID:10104297" /translation="MTLPERPARYWLMKSEPDECSIDDALAAPGATVPWTGVRNYQAR NFMRDEMRIGDGVLFYHSGCPEPGIAGIARVASGVRADPTQFDPASPYYDPKATPGKP RWLLLDVQAIRKTRLVRLAELRAHPALAEMRVLQRGNRLSITPVQEQEWAAILRDCLG GKTAGQSN" misc_feature complement(2290127..2290573) /locus_tag="Alide_2241" /note="EVE domain; Region: EVE; cl00728" /db_xref="CDD:193918" gene complement(2290591..2290842) /locus_tag="Alide_2242" /db_xref="GeneID:10104298" CDS complement(2290591..2290842) /locus_tag="Alide_2242" /inference="protein motif:PFAM:PF04226" /note="PFAM: Transglycosylase-associated protein; KEGG: aav:Aave_2831 transglycosylase-associated protein" /codon_start=1 /transl_table=11 /product="transglycosylase-associated protein" /protein_id="YP_004126865.1" /db_xref="GI:319762928" /db_xref="InterPro:IPR007341" /db_xref="GeneID:10104298" /translation="MMSFLGIVLIGLVVGLLARAIKPGDDKLGWLTTILLGIAGSFVA TYVGVAMHWYQQGETAGWIASVVGAIVLLVLYDLLRRKP" misc_feature complement(2290600..2290743) /locus_tag="Alide_2242" /note="Transglycosylase associated protein; Region: Transgly_assoc; cl00978" /db_xref="CDD:186289" gene complement(2291018..2291572) /locus_tag="Alide_2243" /db_xref="GeneID:10104299" CDS complement(2291018..2291572) /locus_tag="Alide_2243" /inference="protein motif:PFAM:PF00877" /note="KEGG: ajs:Ajs_2091 NLP/P60 protein; manually curated; PFAM: NLP/P60 protein" /codon_start=1 /transl_table=11 /product="nlp/p60 protein" /protein_id="YP_004126866.1" /db_xref="GI:319762929" /db_xref="InterPro:IPR000064" /db_xref="GeneID:10104299" /translation="MFRRFFFLLLFCANAYAAPADEMERMLAERGLIVQLQEMRHSVA DRTSDLISTAMGFIGVPYRRGGSSAETGFDCSGFVRTIFEQAKGMVLPRRANEQAAAT EVIDKKDLQPGDLVFFNTMRRAFSHVGIYVGDGKFIHAPRSGAKVRVEDMGASYWQRR FNGARRVTQDDVDTAAAITASVPR" sig_peptide complement(2291519..2291572) /locus_tag="Alide_2243" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 18" misc_feature complement(2291075..2291398) /locus_tag="Alide_2243" /note="NlpC/P60 family; Region: NLPC_P60; cl11438" /db_xref="CDD:196233" gene 2291886..2293310 /locus_tag="Alide_2244" /db_xref="GeneID:10104300" CDS 2291886..2293310 /locus_tag="Alide_2244" /inference="protein motif:PFAM:PF00324" /note="PFAM: amino acid permease-associated region; KEGG: dac:Daci_3739 D-alanine/D-serine/glycine permease" /codon_start=1 /transl_table=11 /product="amino acid permease-associated region protein" /protein_id="YP_004126867.1" /db_xref="GI:319762930" /db_xref="InterPro:IPR002293" /db_xref="InterPro:IPR004840" /db_xref="InterPro:IPR004841" /db_xref="GeneID:10104300" /translation="MNHEPPPSGQDQHGHDGLQRSLTHRHIQLIAIGGAIGTGLFMGS GKTISLAGPSIVFVYAIIGTMLFFVMRAMGELLLSNLRYKSFIDFASDLLGPWAGFFT GWTYWFCWIVTGIADVIAISSYAQFWLPGLPQWAPALMCVGLLLGLNLLTVKLFGEIE FWFAMIKIVAIVALVGTGLAMVAGGFVSPAGRAASLANLWNDGGMFPHGAMGFFAGFQ IAVFAFVGIELVGTTAAEAEDPERTLPRAINSIPVRIIVFYVCALIAIMAVTPWRDVV PGKSPFVELFVLAGLPAAAGVVNFVVLTSAASSANGGVFSTSRMLYGLALKGDAPRAF HRLSRAGVPARGLLFSCSCLLAGAFLMWVVPDLVQAFTLVTTVSAILFMFVWSLILLS YIAYRRRRPGLHVASRYRMPGGVAMCWACLAFFAAILVLLCLESDTRQALAVTPLWFV LLGLAYRAMLRRLGGAAGTVPAQT" misc_feature 2291886..2293271 /locus_tag="Alide_2244" /note="Transmembrane amino acid transporter protein; Region: Aa_trans; cl00524" /db_xref="CDD:193853" misc_feature 2291961..2293271 /locus_tag="Alide_2244" /note="Amino acid permease; Region: AA_permease; pfam00324" /db_xref="CDD:144058" gene 2293310..2293414 /locus_tag="Alide_2245" /db_xref="GeneID:10104301" CDS 2293310..2293414 /locus_tag="Alide_2245" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126868.1" /db_xref="GI:319762931" /db_xref="GeneID:10104301" /translation="MPFFALTGGSAPARPANGPVAHSDAFNSCTPRNP" gene 2293411..2294829 /locus_tag="Alide_2246" /db_xref="GeneID:10104302" CDS 2293411..2294829 /locus_tag="Alide_2246" /inference="protein motif:TFAM:TIGR00711" /note="KEGG: dia:Dtpsy_1665 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="drug resistance transporter, emrb/qaca subfamily" /protein_id="YP_004126869.1" /db_xref="GI:319762932" /db_xref="InterPro:IPR001411" /db_xref="InterPro:IPR004638" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10104302" /translation="MMPAPVASASRPALLWLVALGFFMQTLDATIVNTALPAMARDLN ESPLQMHSVIVAYSLAMAVLIPASGWLADRFGTRRVFMSAIALFVAGSVLCALAPTLA MLSLARVVQGLGGALLLPVGRLAVLRAFPREEFISAMSLVAIPGLVGPLIGPTLGGWI VEYASWHWIFWVNVPVGLVGLVAARRFMAGGEAQSSREFDAVGYGLLAFGMAAVSLAV EGMAGGGVRGASALVMMVFGLASLAAYWLHALRSPNPLFVPGLFEVRTLRVGLLGNLF SRLGSSCMPFMIPLVLQVSLGYTPMQAGMMMLPTVLGSMAAKPLVTHIVRRWGYREVL VTNTCALALLIASFSLLSPSPPFALLLVQLALFGAVNSMQFSAMNTVTLKDLEGQDAS SGNSLLSMVQMLALGMGVAAAGAVLASFEGYFGQAQHALNAFRATFACMGLLTLAATA LFLQLPAHEPPRAHPPVPEEQV" misc_feature 2293453..>2294151 /locus_tag="Alide_2246" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature 2293462..2294616 /locus_tag="Alide_2246" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature order(2293495..2293497,2293504..2293512,2293516..2293521, 2293570..2293572,2293579..2293584,2293591..2293593, 2293603..2293608,2293612..2293617,2293753..2293758, 2293765..2293770,2293777..2293782,2293789..2293791, 2293825..2293830,2293837..2293842,2293858..2293860, 2294023..2294025,2294032..2294037,2294044..2294049, 2294056..2294058,2294098..2294100,2294110..2294112, 2294122..2294124,2294131..2294133,2294143..2294145) /locus_tag="Alide_2246" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 2295026..2298202 /locus_tag="Alide_2247" /db_xref="GeneID:10104303" CDS 2295026..2298202 /locus_tag="Alide_2247" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE domain protein; PAS fold domain protein; KEGG: dia:Dtpsy_1667 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004126870.1" /db_xref="GI:319762933" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR006189" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10104303" /translation="MSFFTAVRFSPRLWLPGMAVALAGCVASYALWRQQQTSMDAIAH LRFEQETRLFAGALQRRMESHTDLLQGMRGLLTVDPQLRRAEFERVASELALERSHPG VKNINFTRYVPGAQRTAFEAQARGDAHMDGSLPRDFAIHPEQERPEYFVVDFLWPREG NADVQGLEIHSQPDNLEAMMRTRAGGELVASAPFDLHQETERRTGIIIRIPVFAHGTP PGQREAARFLGAVGVSIRIDDVIQMLRAEGYLKGLTLVMSDIGPSGAETGSAALLFDS TSKPAQAADMERVQEVQVGGRRWRLQFQSAGTFLSAQEARLPGLLGLGGMLITALLTA MVSMLVLRRVRALGDVQQAGVALRESEERFRAVFSQAAVGMAQVDLHSDRMVRVNRKL CDLLGYTEAELQQLRFQDISDPRDLDADLAFMERMRSGKISEFRMEKRYCRKDGEIVW AELMVSRLCLEGRPESHLAVVQDIGERKQMEQALSDSEQHLLGILNHMPVGVNLVRGR AIAFRNDRHVQICGYGEQEAPDVDSWWRLVMPDAAERHQAREAWKAACMAARHAADGA IRPVECHITSKAGLLRTVEISGVMLEDSHIVTMVDQSQRRQAEEEVRYLAYNDPLTGL PNRRLLLDRLQQALAMSARHQLCGAVLMLDLDNFKHINETQGHDMGDRLLHAVALRLR ACIPEDDTLARHGGDEFVVVLKDLGASPQEAATRAEAMGLQILDAMREPFALGGGEPR HTTLSVGIVIFQGLHESADELLKRSDMAMYEAKAAGRDALRFFDPQVQAQMTARVALE ADMRSGLEAGEFELFYQPKMVHGRITGAEALLRWKHPVKGYIPPSEFIPLAEQSGLIL RMGQWVLRTACERLALWSSHPVLGQLSVAVNVSPRQFHEAGFVPEVLEALAGTGADAR RLRLELTEGLLLQDVEDTVAKMVQLRGYGVGFSLDDFGTGYSSLAYLKRLPLHELKID QSFVRDVLTDPNDAAIARTIVALGTSLGLQVVAEGVETEAQRVFLERSGCHAWQGYLL SRPLPGLAFEDLVLEHAASASASAGATA" misc_feature 2295275..2295853 /locus_tag="Alide_2247" /note="CHASE domain; Region: CHASE; cl01369" /db_xref="CDD:194114" misc_feature 2296103..2296477 /locus_tag="Alide_2247" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 2296109..2296312 /locus_tag="Alide_2247" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 2296880..2297359 /locus_tag="Alide_2247" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(2296985..2296987,2297114..2297116) /locus_tag="Alide_2247" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(2297000..2297002,2297009..2297014,2297024..2297026, 2297036..2297038,2297102..2297104,2297108..2297119) /locus_tag="Alide_2247" /note="active site" /db_xref="CDD:143635" misc_feature order(2297090..2297092,2297192..2297194) /locus_tag="Alide_2247" /note="I-site; other site" /db_xref="CDD:143635" misc_feature 2297420..2298130 /locus_tag="Alide_2247" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene 2298217..2298546 /locus_tag="Alide_2248" /db_xref="GeneID:10104304" CDS 2298217..2298546 /locus_tag="Alide_2248" /inference="protein motif:PFAM:PF02694" /note="PFAM: protein of unknown function UPF0060; KEGG: ajs:Ajs_2087 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126871.1" /db_xref="GI:319762934" /db_xref="InterPro:IPR003844" /db_xref="GeneID:10104304" /translation="MQALATLGLFLATALAEIVGCYLPWLWLRQGRSAWLLLPAAASL ALFAWLLTLHPAAAGRVYAAYGGVYVAVALLWLWAVDGIRPGPWDWLGVAVTLCGMAI IAFAPRS" sig_peptide 2298217..2298267 /locus_tag="Alide_2248" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.721) with cleavage site probability 0.719 at residue 17" misc_feature 2298265..2298543 /locus_tag="Alide_2248" /note="Uncharacterised BCR, YnfA/UPF0060 family; Region: UPF0060; cl00757" /db_xref="CDD:186176" gene complement(2298701..2299360) /locus_tag="Alide_2249" /db_xref="GeneID:10104305" CDS complement(2298701..2299360) /locus_tag="Alide_2249" /inference="protein motif:PFAM:PF07589" /note="PFAM: protein of unknown function DUF1555; KEGG: nar:Saro_2119 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126872.1" /db_xref="GI:319762935" /db_xref="InterPro:IPR011449" /db_xref="InterPro:IPR013424" /db_xref="GeneID:10104305" /translation="MKLKKTLQAIALCCGLAGVGSVNASVMLFDDAGDVSSILYSATY QGATLSATVQFTLNSLTATQAVFGVQISNDSTGPGNNRLTSFGIDIVSPTLISAVSNG GWGASRNVNFPSFNSVDLCLWDGNNCSGGGNQGVGEGMTESFTLTLGTSGNFLTNGLE FTSPYSVKFQSVGSGGGSLEFAGCIVGTAGCGSQVPEPASLALVGLGLLGAGLARRRK A" sig_peptide complement(2299286..2299360) /locus_tag="Alide_2249" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 at residue 25" gene 2299629..2303153 /locus_tag="Alide_2250" /db_xref="GeneID:10104306" CDS 2299629..2303153 /locus_tag="Alide_2250" /inference="protein motif:TFAM:TIGR02168" /note="KEGG: dia:Dtpsy_1669 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein" /codon_start=1 /transl_table=11 /product="chromosome segregation protein smc" /protein_id="YP_004126873.1" /db_xref="GI:319762936" /db_xref="GO:0005515" /db_xref="GO:0005524" /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR011890" /db_xref="InterPro:IPR019793" /db_xref="GeneID:10104306" /translation="MRLNSIKLAGFKSFAEPTNFQLPGQLVGVVGPNGCGKSNIMDAV RWVLGESKASELRGESMQDVIFNGTTSRKPASRASVELIFDNADHRAGGQWNQFTEIA VKRVLTRDGTSSYYINNQPVRRRDVQDVFLGTGLGPRAYAIIGQGTISRIIESRPEEL RLFLEEAAGVSKYKERRRETENRLADTRENLTRVEDILRELNANLEKLEKQAEVAAKY NALQQDVTLKQHQLWYLKRADAEAEQARVRTEGLQAVNDLESRMADLRSVEADLEAIR QAHYEAGDQVNQAQGKLYEATAEVGKLEAEIRYVVEGRQRVEQRLVQLAAQIQDWSAR KEEAEAELETLEGAGMDAEEQAELLAAQVEEQAAQIPELEDALRQSQQRSEEQRAAVV QIQQQIQVLAAEQRSLDEQSRQLDARFERLRADRSALAAPDEARLAQMRQQLDEAQEA AEMAEARLAELQDSVPQLDEERRARQQAVNQETARQADLSARLEALKALQDKVKVSAK LQPWLARHGLDGLQGLWSRIHIEPGWENALEAALRERLSALPVGRLDMVRGFLGAGGQ DAPPARLAFYSAPAAPAPDASTRQPRLSDLLRVHDAGLRAVLVDWLQGCYTAPSLDEA LAQRAQLQPGEAFYVASGHAVGAHSLSFYAQDSEQSGLLARAQEIEHLEKELRAQALI AEEARTALVRAEAAYADASQRLVAARREATEAQGRAHELQVETLRLTQLAEQTRARSE QIGADLAEVEAQLADLQERRAASEARFEELDMQLADSQERHAQLGDRVIEAERRLAEC REQQRQLERRVQEAQFSHRSLQARRAELARTVDTAATQARTLHDERQRAQDELARLSD AAAQGGLQQALELKMEREKQLAAQRSQYDELTARLRASDERRMQHERQLDPLRARITE FQLKEQAARLGLEQYSQLLQDAQADLAAVARSIEEGGVRAAGLSGEIDRLHREIAALG AVNLAALDELTLARERKTFLDAQTEDLQLAMTTLEDAIRKIDGETRTLLSGTFETVNG HFGRMFPELFGGGQARLIMTGDEILDSGVQVMAQPPGKKNQTIHLLSGGEKALTAIAL VFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVTSMSKGTQFLFISHNKIAMEMAEQ LIGVTMQEQGVSRIVAVDMESALSMAEA" misc_feature 2299632..2303123 /locus_tag="Alide_2250" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:162739" misc_feature 2299635..>2300096 /locus_tag="Alide_2250" /note="Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (...; Region: ABC_SMC_barmotin; cd03278" /db_xref="CDD:73037" misc_feature 2299719..2299742 /locus_tag="Alide_2250" /note="Walker A/P-loop; other site" /db_xref="CDD:73037" misc_feature order(2299728..2299733,2299737..2299745,2300064..2300066) /locus_tag="Alide_2250" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73037" misc_feature 2300055..2300066 /locus_tag="Alide_2250" /note="Q-loop/lid; other site" /db_xref="CDD:73037" misc_feature 2302650..2303105 /locus_tag="Alide_2250" /note="Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (...; Region: ABC_SMC_barmotin; cd03278" /db_xref="CDD:73037" misc_feature 2302788..2302796 /locus_tag="Alide_2250" /note="Q-loop/lid; other site" /db_xref="CDD:73037" misc_feature 2302854..2302883 /locus_tag="Alide_2250" /note="ABC transporter signature motif; other site" /db_xref="CDD:73037" misc_feature 2302926..2302943 /locus_tag="Alide_2250" /note="Walker B; other site" /db_xref="CDD:73037" misc_feature 2302950..2302961 /locus_tag="Alide_2250" /note="D-loop; other site" /db_xref="CDD:73037" misc_feature 2303022..2303042 /locus_tag="Alide_2250" /note="H-loop/switch region; other site" /db_xref="CDD:73037" gene 2303164..2304258 /locus_tag="Alide_2251" /db_xref="GeneID:10104307" CDS 2303164..2304258 /locus_tag="Alide_2251" /inference="protein motif:SMART:SM00771" /note="SMART: ZipA FtsZ-binding region protein; KEGG: dia:Dtpsy_1670 ZipA FtsZ-binding region" /codon_start=1 /transl_table=11 /product="zipa ftsz-binding region protein" /protein_id="YP_004126874.1" /db_xref="GI:319762937" /db_xref="GO:0005515" /db_xref="InterPro:IPR007449" /db_xref="GeneID:10104307" /translation="MSNFQLGLILAGALVLAAVVAYNAWTTYRNAPKRARPPEGEGAQ EPAVRQEPAFDGAGLGNPATAGPEPHFEGHAVDPGDAIDLPVPPAERRSGLDPLIDAI APIVAEQQVSGDAALAAMPPTRRAGSKPFAIEGFSEAAQQWETPQPGQRYLHFQAGVQ LANRLGALNEIEFSEFVMKTQGFADAINATPDFPDMLQEVARARELDQFASDHDAQLA FMLRARQAAWSPGYVQQNAARLGLVAGAIPGRLVLPASGAGLPPMLTLTYDAQAAMSD DPEQSAVRDILLSLDVAQVHRGEQPFKRLREVAAALCQAMDGVLCDQNGTPLPAMTME PIAADLELLYDKLDSRELSAGSALARRLFS" sig_peptide 2303164..2303235 /locus_tag="Alide_2251" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.640 at residue 24" misc_feature 2303800..2304147 /locus_tag="Alide_2251" /note="ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic...; Region: ZipA; cl12038" /db_xref="CDD:196313" gene 2304270..2306423 /locus_tag="Alide_2252" /db_xref="GeneID:10104308" CDS 2304270..2306423 /locus_tag="Alide_2252" /EC_number="6.5.1.2" /inference="protein motif:TFAM:TIGR00575" /note="SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; TIGRFAM: DNA ligase, NAD-dependent; KEGG: ajs:Ajs_2083 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein" /codon_start=1 /transl_table=11 /product="DNA ligase, nad-dependent" /protein_id="YP_004126875.1" /db_xref="GI:319762938" /db_xref="GO:0003911" /db_xref="InterPro:IPR000445" /db_xref="InterPro:IPR001357" /db_xref="InterPro:IPR001679" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR004149" /db_xref="InterPro:IPR004150" /db_xref="InterPro:IPR013839" /db_xref="InterPro:IPR013840" /db_xref="InterPro:IPR018239" /db_xref="GeneID:10104308" /translation="MTEKSELFSAPAPAVPALVASKVEALRAQLNQWAHEYYVLDEPS VPDAEYDRVFQQLQALEGAYPALVTPDSPTQRVIGAVMNGLAPVRHRVAMLSIRTETD TEASGAEAFDARIRRELKLAPEDPPVEYVAEPKFDGLAMSLRYEHGRLVQAATRGDGE VGEDVTHNIRTIRQIPLTLQLSAPTLGADASSLPPEGARFALGRPGGETAPPVLEVRG EVYMRRADFEQLNERQREKGDKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGEV EGGPEFATHYALLQRLKAWGFPVAAQVRIALGAPGLIAFHQQIGAERDQLPYDIDGVV YKVNSLALQRQLGFVTREPRWAVAHKYPAQEMMTRVEGIDVQVGRTGKLTPVARLAPV FVGGVTVTNATLHNLFELRRKRVRVGDQVIVRRAGDVIPEVVGVVPAPRASYVPNFRM PRQCPICASTVVREPGEVNHRCSGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQL VDGHVIRTLPDLFRLDLPTLAGLDRMAEKSAQNVLDALQKSKQTTLPRFLFGLGIRHV GEATAKDLARHFGALDAIMDAGVDQLLQVNDVGPVVAESIHTFFAQPHNREVVGQLRE CGVAWEEGEPTAGATLPLAGKTIVLTGTLPTLSRDEAKDMLEAAGAKVAGSVSKKTHY VVAGAEAGSKLEKAQALGIPVLDEDGLRALLRGEG" misc_feature 2304330..2305358 /locus_tag="Alide_2252" /note="NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114" /db_xref="CDD:29013" misc_feature 2304333..2306408 /locus_tag="Alide_2252" /note="NAD-dependent DNA ligase LigA; Validated; Region: ligA; PRK07956" /db_xref="CDD:181181" misc_feature order(2304558..2304560,2304666..2304668,2304672..2304674, 2304735..2304737,2304924..2304926,2305080..2305082, 2305269..2305271,2305275..2305277) /locus_tag="Alide_2252" /note="nucleotide binding pocket [chemical binding]; other site" /db_xref="CDD:29013" misc_feature order(2304672..2304674,2304678..2304683) /locus_tag="Alide_2252" /note="K-X-D-G motif; other site" /db_xref="CDD:29013" misc_feature 2304672..2304674 /locus_tag="Alide_2252" /note="catalytic site [active]" /db_xref="CDD:29013" misc_feature 2305368..2305592 /locus_tag="Alide_2252" /note="NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120" /db_xref="CDD:145978" misc_feature 2305626..2305709 /locus_tag="Alide_2252" /note="NAD-dependent DNA ligase C4 zinc finger domain; Region: DNA_ligase_ZBD; pfam03119" /db_xref="CDD:190528" misc_feature 2305935..2306126 /locus_tag="Alide_2252" /note="Helix-hairpin-helix motif; Region: HHH_2; pfam12826" /db_xref="CDD:193301" misc_feature 2306199..2306411 /locus_tag="Alide_2252" /note="Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/...; Region: BRCT; cd00027" /db_xref="CDD:28909" misc_feature order(2306244..2306246,2306256..2306258,2306265..2306267, 2306274..2306276,2306280..2306282) /locus_tag="Alide_2252" /note="Dimer interface [polypeptide binding]; other site" /db_xref="CDD:28909" misc_feature order(2306391..2306393,2306403..2306405) /locus_tag="Alide_2252" /note="BRCT sequence motif; other site" /db_xref="CDD:28909" gene 2306427..2307362 /locus_tag="Alide_2253" /db_xref="GeneID:10104309" CDS 2306427..2307362 /locus_tag="Alide_2253" /inference="protein motif:PFAM:PF01734" /note="PFAM: Patatin; KEGG: ajs:Ajs_2082 patatin" /codon_start=1 /transl_table=11 /product="patatin" /protein_id="YP_004126876.1" /db_xref="GI:319762939" /db_xref="InterPro:IPR002641" /db_xref="GeneID:10104309" /translation="MALARRAPRLGLALGSGSARGWAHIGVLQVLQEEGIRPDVVCGS SIGALVGAAYAAGELERFGEWVLGLGMRDVFGFMDFNLAGGMLKGEKLIAFWRRNFAD FTIEDSPLPFGAVATDLHSGAEVWLREGSIADAVRASIALPGLFTPVVREGGRLLVDG GLVNPVPASLARAMGADIVIGVDLNADILHRHMHPLAVVRAPDADAPEDGVAPPEPEP ARNGDWMRRLKFWADGKAPAPRQPSMLDVMMTSVNIMQMRITRSRMAGDPPEVVVAPR LAHLGQLDFHRAKEAIEEGRRAAHASLPQLRQFMG" misc_feature 2306490..2307344 /locus_tag="Alide_2253" /note="hypothetical protein; Provisional; Region: PRK10279" /db_xref="CDD:182352" misc_feature 2306490..2306978 /locus_tag="Alide_2253" /note="Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396" /db_xref="CDD:196212" misc_feature 2306553..2306567 /locus_tag="Alide_2253" /note="nucleophile elbow; other site" /db_xref="CDD:132836" gene 2307550..2310033 /locus_tag="Alide_2254" /db_xref="GeneID:10104310" CDS 2307550..2310033 /locus_tag="Alide_2254" /EC_number="2.4.1.129" /inference="protein motif:PRIAM:2.4.1.129" /note="KEGG: ajs:Ajs_2081 glycosyl transferase family protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase" /codon_start=1 /transl_table=11 /product="peptidoglycan glycosyltransferase" /protein_id="YP_004126877.1" /db_xref="GI:319762940" /db_xref="InterPro:IPR001264" /db_xref="InterPro:IPR001460" /db_xref="GeneID:10104310" /translation="MTFPASLRARWALLWPRLARLARRPERWASAHGLLWLLAALALA VFLYVLALIPFTPAISDIRKAKSDQPAQLLSADGRLLAEYRWVNREWVPLDTIARPVV DALIATEDHRFYDHFGLDWRRTASALVRTLGGDKQGGSTITQQLARNLYPEDIGRAPT LTRKIKEAITALKIEWLYSKDEILETYLNTVPFLYNAYGIEMAARTYFNKSADKLTVL ESATLIGMLKGTAYYNPVLNPERAQARRNTVLAQMKKRGKLSAAEYDKLVKRPLRIRF ERQNEVAGLAPHLAQQLRRQLIDWADRNGYSLYSDGLVIHTTIDGRLQEIANQAVQRQ GRQLQGVADAAWAPRSAWGAKSPLVQQLVRESPQYEKAVAAGTAPEEAAKRLLDDAGF LRSLRQAKTRVQAGFMALDPRNGAVLAWVGSRDYGVDPFDHVQAARRQPGSTFKPFVY GAAFAKGMLPTDELMDTTVEIPLGGKRVWRPTDGRTPPSEEPMQLRDGLAYSKNTITA QLMQQVGPERVAQLARAMGVRESKLEAVPALALGTSSVTLKEMVAAYGTIANGGRYMA PQVITRIEDKNGRLLEAFKPASPERALGLAAAQELRDAMRGVVDKGTGVAIRSRYGIT ADVAGKTGTTQDNTDGWFILMHPQLVAGAWAGFNDGRITLRSDYWGQGAHSALPIVGD VFRQALRAKIIDARERFIDEEESSWIATATGTLRNWVYDLFGRPTGEQAGPAGAPPAP QPDLPRAPAPAASAPPQEERPEIIEAPLIPLQEVAPRANAPAEPPVWVEQPAPEAPQP AAPSAAPGVVIVPVVPRPQGAAPLLAETR" misc_feature 2307778..2308311 /locus_tag="Alide_2254" /note="Transglycosylase; Region: Transgly; cl07896" /db_xref="CDD:195645" misc_feature 2308762..2309613 /locus_tag="Alide_2254" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene 2310044..2311240 /locus_tag="Alide_2255" /db_xref="GeneID:10104311" CDS 2310044..2311240 /locus_tag="Alide_2255" /inference="protein motif:PFAM:PF07690" /note="PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_1675 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily mfs_1" /protein_id="YP_004126878.1" /db_xref="GI:319762941" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10104311" /translation="MQPPRQAPRARIPAAVWALGLVSMLMDISSEMIHSLLPMFMVGT LGMSALAVGLVEGLAEATALMVKVFSGALSDYFGRRKSLALLGYALGAFTKPLFAMAS GAGLILAARLIDRVGKGVRGAPRDALVADITPPEIRGAAFGLRQSLDTVGAFVGPLLA AGLMLLWADDFRAVFWVAVVPGLLAVAVLALGVREPERHEGARRTNPIRRENMRRLGP AYWWVVAVGALFTLARFSEAFLVLRAQQAGIAMALVPLVMAAMNLVYAAAAYPFGWLS DRVGHTRLLAWGLVVLIAADALLATAQHWSMVIVGVAVWGIHMGMTQGLLATMVANAA PADLRGTAYGVFNLASGLAMLAASVIAGLLWETVGPAATFWAGGAFAALCLAGLGRRR GSGALR" misc_feature 2310089..>2310571 /locus_tag="Alide_2255" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature 2310098..2311117 /locus_tag="Alide_2255" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature order(2310131..2310133,2310140..2310148,2310152..2310157, 2310209..2310211,2310218..2310223,2310230..2310232, 2310242..2310247,2310251..2310256,2310395..2310400, 2310407..2310412,2310419..2310424,2310431..2310433, 2310467..2310472,2310479..2310484,2310500..2310502) /locus_tag="Alide_2255" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature <2310857..2311153 /locus_tag="Alide_2255" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(2311233..2311781) /locus_tag="Alide_2256" /db_xref="GeneID:10104312" CDS complement(2311233..2311781) /locus_tag="Alide_2256" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_1676 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="nudix hydrolase" /protein_id="YP_004126879.1" /db_xref="GI:319762942" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR020084" /db_xref="GeneID:10104312" /translation="MIFRRPIKHCRECGAAVAYRLPGDGDTRERAVCPVCGTIHYENP LMVVGTVPVLGERVLLCKRNIEPRWGKWTLPAGFMELDETTEQGAARETDEEAGAQIE LGPLFSLLNVPQVGQVHIFYLATLLSDRFDPGHETIEARLFTEDEIPWDEISFRTVKK TLERFFADRRAGRFGVHCVDIT" misc_feature complement(2311296..2311685) /locus_tag="Alide_2256" /note="Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_4; cd04511" /db_xref="CDD:72897" misc_feature complement(2311485..2311553) /locus_tag="Alide_2256" /note="nudix motif; other site" /db_xref="CDD:72897" gene complement(2311849..2312544) /locus_tag="Alide_2257" /db_xref="GeneID:10104313" CDS complement(2311849..2312544) /locus_tag="Alide_2257" /inference="protein motif:PFAM:PF01557" /note="PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dia:Dtpsy_1677 fumarylacetoacetate (FAA) hydrolase" /codon_start=1 /transl_table=11 /product="fumarylacetoacetate (faa) hydrolase" /protein_id="YP_004126880.1" /db_xref="GI:319762943" /db_xref="GO:0003824" /db_xref="InterPro:IPR002529" /db_xref="GeneID:10104313" /translation="MSYVIPAPVQASVPVLGSADRFPVHRIYCVGRNYAEHAKEMGFT GREPPFFFMKPADAVLPVSAGETGSMPYPSLTKDLHHEIELVVAIGKGGRNIAAADAR QHIWGYAVGLDMTRRDLQGEMKKQGRPWCIGKGFDAGAPIGPITPAAQAGDVERAAIW LQVNGADRQRSTVDQLIWNIAETIEHLSAAWELQPGDLIFTGTPEGVGAVVRGDVLEG GIDGLGRLRVALV" misc_feature complement(2311861..2312469) /locus_tag="Alide_2257" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 2312658..2313323 /locus_tag="Alide_2258" /db_xref="GeneID:10104314" CDS 2312658..2313323 /locus_tag="Alide_2258" /inference="protein motif:TFAM:TIGR01262" /note="KEGG: dia:Dtpsy_1678 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain" /codon_start=1 /transl_table=11 /product="maleylacetoacetate isomerase" /protein_id="YP_004126881.1" /db_xref="GI:319762944" /db_xref="GO:0003824" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="InterPro:IPR005955" /db_xref="InterPro:IPR017933" /db_xref="GeneID:10104314" /translation="MKLYNYFRSSASFRVRIALELKGLPYDYVPVHLQKGEQRAPAYA SRLGDALVPALQTDDGHLLAQSMAIIEYLDETHPEPPLLPGGALARAHVRALAQMVAC EIHPLNNLRVLKYLKHQLKVPDAAKDDWYHHWVRQGLEAFERQLALLDRERAAAGLAP SRLCWGDAPTLADCCLVPQIFNGQRFGVDLGGLSRTMAAFKACMQLPAFQRAQPSACP DHE" misc_feature 2312658..2312879 /locus_tag="Alide_2258" /note="GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_N_Zeta; cd03042" /db_xref="CDD:48591" misc_feature 2312661..2313314 /locus_tag="Alide_2258" /note="maleylacetoacetate isomerase; Region: maiA; TIGR01262" /db_xref="CDD:162274" misc_feature order(2312676..2312678,2312694..2312699,2312703..2312705, 2312739..2312741,2312856..2312858,2312868..2312870) /locus_tag="Alide_2258" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48591" misc_feature order(2312682..2312684,2312688..2312690,2312697..2312699, 2312769..2312771,2312808..2312813,2312850..2312855) /locus_tag="Alide_2258" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48591" misc_feature order(2312808..2312810,2312847..2312852,2312856..2312861, 2312868..2312870) /locus_tag="Alide_2258" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48591" misc_feature 2312925..2313305 /locus_tag="Alide_2258" /note="GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_C_Zeta; cd03191" /db_xref="CDD:48118" misc_feature order(2312925..2312927,2312937..2312939,2312949..2312951, 2313045..2313047,2313087..2313089) /locus_tag="Alide_2258" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48118" misc_feature order(2312937..2312939,2312949..2312951,2312985..2312987, 2313177..2313179,2313186..2313188,2313201..2313203, 2313210..2313212,2313291..2313293,2313297..2313299) /locus_tag="Alide_2258" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48118" misc_feature order(2312970..2312972,2312979..2312981,2312985..2312987, 2313201..2313203,2313210..2313212) /locus_tag="Alide_2258" /note="putative maleylacetoacetate (MAA) substrate binding site (H site); other site" /db_xref="CDD:48118" gene 2313316..2314164 /locus_tag="Alide_2259" /db_xref="GeneID:10104315" CDS 2313316..2314164 /locus_tag="Alide_2259" /inference="protein motif:PFAM:PF02578" /note="PFAM: protein of unknown function DUF152; KEGG: dia:Dtpsy_1679 protein of unknown function DUF152" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126882.1" /db_xref="GI:319762945" /db_xref="InterPro:IPR003730" /db_xref="GeneID:10104315" /translation="MSEPVAHPVPHDWLQPDWPAPAHVRALCTTRNGGVSTPPYDSFN LGRYVGDAPEAVQANWAALQAALGAGGRPVRPVYLRQVHGTDVLPLDKDTPEGADADA CTTRARGVACVVMAADCLPVLFTDRAGTRVAAAHAGWRGLATGVLEETLKQFLAPGHA RQAPAAIEDEAPRSPGDVIAWLGPCIGPQAFEVGPEVRDAFCAQDPQAARHFRPHGGA GKLLADLAGLARQRLRERGVTALYGNDGSPAWCTVGNPSRFFSHRRDSPVLGTSGRMA ACVWLT" misc_feature 2313346..2314158 /locus_tag="Alide_2259" /note="Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]; Region: yfiH; COG1496" /db_xref="CDD:31685" misc_feature 2313361..2314158 /locus_tag="Alide_2259" /note="Multi-copper polyphenol oxidoreductase laccase; Region: Cu-oxidase_4; cl00650" /db_xref="CDD:186127" gene complement(2314084..2314374) /locus_tag="Alide_2260" /db_xref="GeneID:10104316" CDS complement(2314084..2314374) /locus_tag="Alide_2260" /inference="similar to AA sequence:KEGG:Dtpsy_1680" /note="KEGG: dia:Dtpsy_1680 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126883.1" /db_xref="GI:319762946" /db_xref="GeneID:10104316" /translation="MYLVLIGWLYVTVLMALAEGLSEQGTVLGAIITFVLYGLLPMSI VLYILGTPARKRAIRARERAEAEAAASGQPDAGGHAPAGAEHGAVAPVRKEP" gene 2314525..2316234 /locus_tag="Alide_2261" /db_xref="GeneID:10104317" CDS 2314525..2316234 /locus_tag="Alide_2261" /inference="protein motif:TFAM:TIGR01838" /note="KEGG: dia:Dtpsy_1681 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="poly(r)-hydroxyalkanoic acid synthase, class i" /protein_id="YP_004126884.1" /db_xref="GI:319762947" /db_xref="GO:0008415" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR010941" /db_xref="InterPro:IPR010963" /db_xref="GeneID:10104317" /translation="MDETTDWTESARQFQQILGESWGKALQMLQPGELGKAMSMPPSA PLSFAPDKLAALQQQYMEDARALWGQGPHAQASKTGDRRFAGESWANNPLSAFSVAAY QLQARALMGLADAVEADEKTRARIRFSVEQWLAAMAPSNFLALNAEAQKKALETHGES IAKGVANLLHDMRQGHISMTDESRFEVGRNVATTEGAVVFENELFQLLEYKPLTPKVY ERPFLMVPPCINKYYILDLQPENSLIRHAVAQGHRTFVVSWRNPDASLAHKTWDDYIE DAVLTAVATVQKIAGTKQINALGFCVGGTMLANALAVLAARGQDSVASATFLTTLIDF GDTGILDVFIDESFVRLREMQMGQGGLMKGQDLASTFSFLRPNELVWNYVVDNYLKGQ TPPPFDLLYWNSDSTNLPGPYYAWYLRNFYLENRLIEPGALTVCGEKLDLSKVKLPVY IYGSREDHIVPAAAAYASTQVLPGKKRFVMGASGHIAGVINPPAKKKRSHWVREDGKL PPTLDEWLAGATELPGSWWDDWCAWLAGHAGKQVAAPKSYGKAPHFKDIEPAPGRYVK QKA" misc_feature 2314660..2316225 /locus_tag="Alide_2261" /note="poly(R)-hydroxyalkanoic acid synthase, class I; Region: PHA_synth_I; TIGR01838" /db_xref="CDD:130897" misc_feature 2314762..2315262 /locus_tag="Alide_2261" /note="Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; Region: PhaC_N; pfam07167" /db_xref="CDD:115798" gene 2316314..2317492 /locus_tag="Alide_2262" /db_xref="GeneID:10104318" CDS 2316314..2317492 /locus_tag="Alide_2262" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ajs:Ajs_2073 acetyl-CoA acetyltransferase; PFAM: Thiolase-like" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004126885.1" /db_xref="GI:319762948" /db_xref="GO:0008415" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020610" /db_xref="InterPro:IPR020613" /db_xref="InterPro:IPR020615" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10104318" /translation="MEDIVIVSAVRTPVGKFGGALAKTPATDLGALVIREALARARVA PDQVGEVIMGQVLAAGCGQNPARQAMMKAGVAKETPALTINAVCGSGLKAVMLAAQAV ATGDSEIVVAGGQENMSLAPHVLNGSREGQRMGDWKLTDTMIVDGLWDVYNQYHMGIT AENVAKAYGITREMQDALALASQQKAAAAQDAGRFADEIVGVSLPQKKGDPVLFNADE YLNRKTNAEALAGLRPAFDKAGSVTAGNASGINDGAAAVVVMSAKKAAALDLKPLARI AAYGTAGLDPATMGMGPVPASRKALQRAGWNAADVDLFELNEAFAAQACAVNKELAID PARVNVNGGAIAIGHPIGASGCRVLVTLLHEMQRRNAAKGLAALCIGGGMGVSMALER " misc_feature 2316314..2317489 /locus_tag="Alide_2262" /note="putative acyltransferase; Provisional; Region: PRK05790" /db_xref="CDD:180261" misc_feature 2316326..2317489 /locus_tag="Alide_2262" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(2316380..2316382,2316461..2316463,2316503..2316505, 2316512..2316514,2316524..2316526,2316557..2316568, 2316590..2316592,2316611..2316616,2316623..2316625, 2316668..2316670,2317148..2317150,2317154..2317156, 2317160..2317162,2317220..2317222,2317457..2317462) /locus_tag="Alide_2262" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(2316575..2316577,2317358..2317360,2317448..2317450) /locus_tag="Alide_2262" /note="active site" /db_xref="CDD:29411" gene 2317652..2318389 /locus_tag="Alide_2263" /db_xref="GeneID:10104319" CDS 2317652..2318389 /locus_tag="Alide_2263" /inference="protein motif:TFAM:TIGR01829" /note="KEGG: ajs:Ajs_2072 3-ketoacyl-(acyl-carrier-protein) reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="acetoacetyl-CoA reductase" /protein_id="YP_004126886.1" /db_xref="GI:319762949" /db_xref="GO:0018454" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR011283" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10104319" /translation="MSQKVAYVTGGMGGIGTAICQRLHREGMKVIAGCGPTRDYEKWL NEQKALGYTFYASVGNVGDWDSTVQAFANAKAEHGTIDVLVNNAGITRDRMFVKMTRE DWDAVIETNLNSMFNVTKQVVADMVEKGWGRIINISSVNGEKGQAGQTNYSAAKAGMH GFSMALAQELATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVNTVPVKRLGEPSEIAS IVAWLASEEGGYATGADFSVNGGLHMR" misc_feature 2317652..2318383 /locus_tag="Alide_2263" /note="acetyacetyl-CoA reductase; Provisional; Region: PRK12938" /db_xref="CDD:171822" misc_feature 2317661..2318380 /locus_tag="Alide_2263" /note="beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333" /db_xref="CDD:187594" misc_feature order(2317679..2317681,2317685..2317696,2317751..2317756, 2317826..2317834,2317910..2317921,2317979..2317981, 2318060..2318068,2318105..2318107,2318117..2318119, 2318195..2318200,2318204..2318206,2318210..2318218) /locus_tag="Alide_2263" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187594" misc_feature order(2317715..2317717,2317727..2317729,2317853..2317855, 2317931..2317942,2317946..2317954,2317961..2317966, 2317973..2317975,2317985..2317990,2317997..2318002, 2318006..2318011,2318018..2318023,2318030..2318032, 2318078..2318101,2318108..2318113,2318120..2318125, 2318132..2318137,2318141..2318158,2318162..2318167, 2318201..2318203,2318264..2318272,2318276..2318287, 2318294..2318296,2318303..2318308,2318312..2318317, 2318327..2318329,2318336..2318374,2318378..2318380) /locus_tag="Alide_2263" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187594" misc_feature order(2317934..2317942,2317946..2317948,2317952..2317954, 2317961..2317966,2317973..2317975,2317985..2317990, 2317997..2318002,2318009..2318011,2318018..2318023, 2318030..2318032,2318075..2318101,2318108..2318113, 2318120..2318125,2318132..2318137,2318141..2318149, 2318153..2318158) /locus_tag="Alide_2263" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187594" misc_feature order(2317982..2317984,2318066..2318068,2318105..2318107, 2318117..2318119) /locus_tag="Alide_2263" /note="active site" /db_xref="CDD:187594" gene complement(2318818..2320746) /locus_tag="Alide_2264" /db_xref="GeneID:10104320" CDS complement(2318818..2320746) /locus_tag="Alide_2264" /inference="protein motif:PFAM:PF00005" /note="KEGG: ajs:Ajs_2071 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126887.1" /db_xref="GI:319762950" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10104320" /translation="MISLRNLTLRRGTRVLLDSASVSINPGEKVGLVGRNGAGKSTLF ALLNGTLHEDGGDFLMPPQWRMAQVAQHMPETAQPATDFVLDGDTRLSHLREQLRKAE QLGDGMAIAQAHADLADAGAHDAPARAQALILGLGFQVAELDRPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLKRYEGTLIVISHDREFLDAVTQVTLH IDNAQLTRYGGNYSQFEELRAQQLTLQQAAFERQQAKIAHLQKFIDRFKAKATKARQA QSRVKALERMERIAPVLASAEFTFEFQEPANLPNPMLALTDASFGYRAEDGSEKAVLS GVSRTVLAGQRIGILGANGQGKSTLVKTIARTMAPLGGKVTEGKGLAIGYFAQQELDV LRPDDHPLAHMVRLARELGVDAREQDLRNFLGSFNFSGDMVLQNVGSMSGGEKARLVL AMIVWQRPNLLLLDEPTNHLDLATREALAMALNEFEGTVMLVSHDRALLRSVCDEFWL VGRGQVGPFDGDLDDYQRYLLDESRRLREQARATAPAPAAVPAPDAREQRRLEAQARQ QLAEKTRPLKRELETIDQRLALLAQEKAQLEERLMQELPPAEIAESGRRLKTCTEEVE RLEEKWLDVSAALEELGR" misc_feature complement(2319154..2320746) /locus_tag="Alide_2264" /note="ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488" /db_xref="CDD:30834" misc_feature complement(<2320204..2320743) /locus_tag="Alide_2264" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2320624..2320647) /locus_tag="Alide_2264" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(2320222..2320227,2320507..2320509, 2320621..2320629,2320633..2320638)) /locus_tag="Alide_2264" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(order(2320507..2320512,2320513..2320515)) /locus_tag="Alide_2264" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(2320084..>2320299) /locus_tag="Alide_2264" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" misc_feature complement(2320270..2320299) /locus_tag="Alide_2264" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(2320222..2320239) /locus_tag="Alide_2264" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(2320204..2320215) /locus_tag="Alide_2264" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(2319847..2320098) /locus_tag="Alide_2264" /note="ABC transporter; Region: ABC_tran_2; pfam12848" /db_xref="CDD:193322" misc_feature complement(2319208..2319810) /locus_tag="Alide_2264" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" gene complement(2320802..2321788) /locus_tag="Alide_2265" /db_xref="GeneID:10104321" CDS complement(2320802..2321788) /locus_tag="Alide_2265" /inference="similar to AA sequence:KEGG:Daci_3609" /note="KEGG: dac:Daci_3609 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126888.1" /db_xref="GI:319762951" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10104321" /translation="MTPLSRRRMLAHALGAALLPLAGMPARAQGRYPSRPVKWLVPYL PATGPDMVARILAEAVGPFLGQPIVIENRPGAAGNIGTRAVAKSPADGYTLLYTGSPL AANMHIYKNPGYDALKDFRHVMRLSSSTVGLVVNADSDIHSLDDLLARLKARPGQMDY ASGGVGTPSHLGVELFLSVTRTKAMHVPYKGASELVNALLGNQVTFGMPIFSAANPMI KAGKLRALAIAGARRNPVEPQVPTLAELGIPGVELTSFGGISVPAGTPDAVVETIYKA FSEALRQPKVVAALQENGGQVDVRDGAAFVQNIQQEMQLTAAMMKQLGLKPV" sig_peptide complement(2321702..2321788) /locus_tag="Alide_2265" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.987 at residue 29" misc_feature complement(2320814..2321695) /locus_tag="Alide_2265" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2320814..2321635) /locus_tag="Alide_2265" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2321846..2323075) /locus_tag="Alide_2266" /db_xref="GeneID:10104322" CDS complement(2321846..2323075) /locus_tag="Alide_2266" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_3610 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004126889.1" /db_xref="GI:319762952" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10104322" /translation="MNASTPTTRLAAAGPALPEMPFEGSPLAAQLIAALRDFLHGELV DLARSHGIDHEHSPDKALLRQVWRRSHALGFYGMSLPPSMGGKELSVLDQVLIKEAIY ATGSPFAPHVLGELSGPPRIGALVRKATPWQMEQFIAPVARADKAICFALTEAGAGSD AGALQTRATQDGDHYVLHGRKRFISGSPFADCAVLLASTAPEGAAEREISAFFVDLHA PGVEVVSGYKTMAGQSHTGDIVLDGARVPAAQLIGERGRGLALALGRITVNRLMHCPA MLGLAQVALRDARDYALERRQFGRSIAQFQAIQHMLADMATQWAAARALMVQTARAID AGIDARAQASMSKLFCSEAAFGIADRAVQIHGGEGIVQGRRVEFLFRMLRMYRVLTGT SEIQRNTIARELLATPA" misc_feature complement(2321849..2323018) /locus_tag="Alide_2266" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(2322641..2322988) /locus_tag="Alide_2266" /note="Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771" /db_xref="CDD:190417" misc_feature complement(2321870..2322739) /locus_tag="Alide_2266" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature complement(order(2321894..2321896,2321900..2321902, 2321906..2321914,2322521..2322523,2322527..2322529, 2322620..2322622,2322626..2322628,2322725..2322727)) /locus_tag="Alide_2266" /note="active site" /db_xref="CDD:173838" gene complement(2323077..2324657) /locus_tag="Alide_2267" /db_xref="GeneID:10104323" CDS complement(2323077..2324657) /locus_tag="Alide_2267" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_3611 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004126890.1" /db_xref="GI:319762953" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10104323" /translation="MTSTSTPPPGSPIPNVGALVARSCRAHARLPAVTSAARSITYGE LEQRSSRLANALLSGGLARGDRVGIYLHNCVEIVEIEIACYKAGLVKAPFNARLSPRE VGEIAANSEARIIVTTAARAEAFRPHLADPGVQLLLLDGPAGSDYESRLARASAHFEP VAVREHELAVLHYTSGSSGVLKAAMQTFGNRLAQLRKFLMRGEGMQAGHVLGLVGPIT HASGMQLVPALCTGACIHLFAQFEPAGFIAEMQQRRVTHTFMVPTMINMLLAEVQGRY RPLPDLLRLGYGAAPMAPTRILQAMDVFGPVLSQGYGAGETTSGVCGLSALDHLQARA ARPERLASCGRPFLESIVEVVDGDGNPLPQGEVGEIVVSGPDVFAGYWRAPDLTAEVL RNGRYHTGDLARMDEEGFVYIVDRKKDMVISGGFNVYPSEVEAVLYRHQAVQDACVFA IPDDKWGEAVAAHIVLKPGAQPDPGALDRFCAEHLGGFKRPRHIEFVEQLPKNPNGKV MRKTVQAPYWSNLSRKVN" misc_feature complement(2323104..2324615) /locus_tag="Alide_2267" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature complement(2323122..2324537) /locus_tag="Alide_2267" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(2324762..2325766) /locus_tag="Alide_2268" /db_xref="GeneID:10104324" CDS complement(2324762..2325766) /locus_tag="Alide_2268" /inference="protein motif:PFAM:PF00126" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_3612 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein lysr" /protein_id="YP_004126891.1" /db_xref="GI:319762954" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10104324" /translation="MDLRALRYFIAVVEVGSLSRAAHSLYVAQPALTAQIKKLEAELG AQLLERSHAGVTPTPAGTQLYQDARRLLSDAEAMGERIRRLPQGPEGSVTIAVPFLLT TLLLGPVIAQLSQTHPRIRVFVLDGLSLTVQKAVLERRADIGIVVDTPALPGLDCQPM AQEDILLTGLDRGAAVVPLLQSDPGGGLPSLAFAHASRLPLVLQSRRFAIRQSVEAAA EQRGLRLNIVHEHDSARVIRSLYHCGAGFTFSPACTLAEVSLAQRQQSAAPGHWIVAR VTDPALQRRYFVTTQASRADDAATAVVRECLLAHARSLIDGGQWQACWLLDASPQAIN " misc_feature complement(2324825..2325766) /locus_tag="Alide_2268" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(2325584..2325760) /locus_tag="Alide_2268" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2324846..2325493) /locus_tag="Alide_2268" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature complement(order(2325038..2325043,2325047..2325052, 2325068..2325085,2325389..2325409,2325413..2325415, 2325425..2325427,2325434..2325439,2325443..2325448)) /locus_tag="Alide_2268" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(2325768..2326691) /locus_tag="Alide_2269" /db_xref="GeneID:10104325" CDS complement(2325768..2326691) /locus_tag="Alide_2269" /inference="protein motif:TFAM:TIGR03533" /note="KEGG: ajs:Ajs_2070 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small" /codon_start=1 /transl_table=11 /product="protein-(glutamine-n5) methyltransferase, ribosomal protein l3-specific" /protein_id="YP_004126892.1" /db_xref="GI:319762955" /db_xref="GO:0008276" /db_xref="GO:0009007" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR004556" /db_xref="InterPro:IPR007848" /db_xref="InterPro:IPR017127" /db_xref="GeneID:10104325" /translation="MTPAVHGATVGALIASGAQQLARAGVAFGHGTANARDEAVWLVL WRLGLPLDSVLDEDAPDSVANQPVTPASQALVATLFEERIATRKPAAYLTREAWLVGV PFYVDERAIVPRSFIAEILANGSIDDWLTDRTTNVLDLCTGNGSLAVLAAMAWPEVRV TGADLSPDALAVARINVERHGLQERIRLVQSDGLAAVPGPWDLILCNPPYVNAQSMSE LPAEYRAEPELALAGGGDGMDFIHRLLREAPACMTEDAVLVLEIGNERAHFEAAFPQL PVFWLQTSAGEDQVLLVTRAALLAAGTAAPG" misc_feature complement(2325852..2326637) /locus_tag="Alide_2269" /note="Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]; Region: HemK; COG2890" /db_xref="CDD:32715" misc_feature complement(<2326062..2326286) /locus_tag="Alide_2269" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(2326071..2326073,2326113..2326121, 2326197..2326202,2326254..2326274)) /locus_tag="Alide_2269" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(2326688..2327866) /locus_tag="Alide_2270" /db_xref="GeneID:10104326" CDS complement(2326688..2327866) /locus_tag="Alide_2270" /inference="protein motif:TFAM:TIGR01246" /note="KEGG: ajs:Ajs_2069 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein" /codon_start=1 /transl_table=11 /product="succinyl-diaminopimelate desuccinylase" /protein_id="YP_004126893.1" /db_xref="GI:319762956" /db_xref="GO:0009014" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR005941" /db_xref="InterPro:IPR011650" /db_xref="GeneID:10104326" /translation="MPSPTLLLTEQLIARPSVTPEDAGCLDLLAERLAPLGFACERLD SGPSSFRVCNLWAKRAATPTSQSQAAIKTVVFAGHTDVVPTGPVEQWSSAPFTPTQRD GRLYGRGASDMKTSIAAFVVAVEEFLAATPAPAIAIAFLLTSDEEGPSVDGTKVVVEQ LRARGERLDWCIVGEPTSVQSTGDMIKNGRRGTLSGRLTVRGVQGHIAYPHLARNPIH QAVPALAELAATVWDRGNDFFPPTSWQMSNIHGGTGATNVIPGEVAIDFNFRFCTEST AESLKERVHAVLDHHGLEYDLAWTLGGQPFLTTPGELVGAVQQAIHAETGLTTELSTT GGTSDGRFIAQICPQVVELGPPNDSIHKIDENIRLTDIEPLKNIYRRTLENLNAQAAA " misc_feature complement(2326703..2327863) /locus_tag="Alide_2270" /note="succinyl-diaminopimelate desuccinylase; Reviewed; Region: PRK13009" /db_xref="CDD:183838" misc_feature complement(2326718..2327845) /locus_tag="Alide_2270" /note="M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase; Region: M20_DapE_proteobac; cd03891" /db_xref="CDD:193511" misc_feature complement(order(2326784..2326786,2327342..2327344, 2327426..2327431,2327531..2327533,2327630..2327632)) /locus_tag="Alide_2270" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193511" misc_feature complement(order(2326862..2326864,2327057..2327059, 2327063..2327065,2327087..2327092,2327111..2327134, 2327138..2327140,2327183..2327185,2327192..2327197, 2327201..2327206,2327213..2327218,2327222..2327224, 2327240..2327251,2327282..2327284)) /locus_tag="Alide_2270" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:193511" gene complement(2327890..2329053) /locus_tag="Alide_2271" /db_xref="GeneID:10104327" CDS complement(2327890..2329053) /locus_tag="Alide_2271" /inference="protein motif:TFAM:TIGR01420" /note="KEGG: dia:Dtpsy_1891 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E" /codon_start=1 /transl_table=11 /product="twitching motility protein" /protein_id="YP_004126894.1" /db_xref="GI:319762957" /db_xref="GO:0005524" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR006321" /db_xref="GeneID:10104327" /translation="MSTMERILRLMGEKKASDVYLSANAPALIKINGECVPINSQILP PDAPRNLLAEIVPPERIEELEETGELNMGVPLTGVGRFRISAMRQRGTYAVVIRFIAQ EIPKLSTLNLPPVLGALIMEKRGLILVVGATGSGKSTTLAAMLDERNEAMTGHILTVE DPVEYQFKNKRSIVNQREIGGDTQSLQTALKNALRQAPDVILIGEIRDRETMSAAIAY AQSGHLCLATLHGNNSYHALNRILSFYPVEVRPTMLGDLASALKAIVSQRLVRTKAGE RLPAVEVMLNTKLVADLVEQGNFSGVRDAMEKSMAEGSQTFEEALAHLILSDRIDRKE GLAYADSPTNLMWRLQNDFSIAAKAAQAQQEESQPPEDDEPSFTEIVLDVKPV" misc_feature complement(2328004..2329053) /locus_tag="Alide_2271" /note="Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilU; COG5008" /db_xref="CDD:34613" misc_feature complement(2328091..2328684) /locus_tag="Alide_2271" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(2328640..2328648,2328658..2328663)) /locus_tag="Alide_2271" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature complement(order(2328439..2328444,2328571..2328576, 2328580..2328582,2328640..2328648,2328658..2328660)) /locus_tag="Alide_2271" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature complement(2328442..2328456) /locus_tag="Alide_2271" /note="Walker B motif; other site" /db_xref="CDD:29986" gene complement(2329116..2329940) /locus_tag="Alide_2272" /db_xref="GeneID:10104328" CDS complement(2329116..2329940) /locus_tag="Alide_2272" /inference="protein motif:TFAM:TIGR00965" /note="TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: dia:Dtpsy_1890 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase" /codon_start=1 /transl_table=11 /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase" /protein_id="YP_004126895.1" /db_xref="GI:319762958" /db_xref="GO:0008666" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR005664" /db_xref="InterPro:IPR018357" /db_xref="GeneID:10104328" /translation="MSQQLQTLIDNAWDNRASLSPASAPKEVVDAVEHVISELNNGQL RVATREGVGRWTVHQWIKKAVLLSFRLKDNAIMKAGDLAFFDKVPTKFSHLTPDEMAA TGVRVVPPAVARRGSFIAKGAILMPSYVNIGAYVDEGTMVDTWATVGSCAQVGKNVHL SGGVGLGGVLEPLQAGPTIIEDNCFIGARSEIVEGVVVEENSVISMGVYIGQSTPIYD RATGETIYGRVPAGSVVVSGNLPKDGGRYSMYAAIIVKKVDAKTRSTTSLNDLLRD" misc_feature complement(2329122..2329934) /locus_tag="Alide_2272" /note="2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional; Region: dapD; PRK11830" /db_xref="CDD:183330" misc_feature complement(2329218..2329592) /locus_tag="Alide_2272" /note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA...; Region: LbH_THP_succinylT; cd03350" /db_xref="CDD:100041" misc_feature complement(order(2329323..2329328,2329359..2329361, 2329374..2329382,2329419..2329421,2329428..2329433, 2329437..2329439,2329458..2329460,2329464..2329466, 2329491..2329493,2329512..2329514,2329548..2329550, 2329563..2329565)) /locus_tag="Alide_2272" /note="active site" /db_xref="CDD:100041" misc_feature complement(order(2329431..2329433,2329491..2329493, 2329512..2329514,2329548..2329550,2329563..2329565)) /locus_tag="Alide_2272" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100041" misc_feature complement(order(2329218..2329220,2329224..2329235, 2329314..2329316,2329368..2329370,2329374..2329376, 2329452..2329454,2329500..2329508,2329554..2329556, 2329560..2329562)) /locus_tag="Alide_2272" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100041" misc_feature complement(order(2329323..2329328,2329359..2329361, 2329374..2329382,2329419..2329421,2329437..2329439, 2329455..2329460)) /locus_tag="Alide_2272" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100041" gene complement(2329948..2331150) /locus_tag="Alide_2273" /db_xref="GeneID:10104329" CDS complement(2329948..2331150) /locus_tag="Alide_2273" /inference="protein motif:TFAM:TIGR03538" /note="KEGG: dia:Dtpsy_1889 succinyldiaminopimelate transaminase; TIGRFAM: succinyldiaminopimelate transaminase; PFAM: aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="succinyldiaminopimelate transaminase" /protein_id="YP_004126896.1" /db_xref="GI:319762959" /db_xref="InterPro:IPR004839" /db_xref="InterPro:IPR019878" /db_xref="GeneID:10104329" /translation="MNPLLSLLQPYPFERLRQLFAGVTPSAEHSPISLGIGEPRHATP QFIKDALAEGLAGLASYPSTLGEPRLREACAGWMQRRYGVVVDPATQVLPVNGSREAL FAFAQTVVDASRPGATVVCPNPFYQIYEGATLLAGATPHYAPSDPARNFAVDWDSVPE DVWQRTQLLFTCSPGNPTGAVMPLTEWEKLFALSDRYGFVIASDECYSEIYFRDEPPL GGLEAAHRLGRTDYRNLLAFTSLSKRSNVPGLRSGFVAGDAALVKAFLLYRTYHGSAM GPAVQAASIAAWNDETHVQENRALYRRKFAQVTPMLAQVMQVGLPDAGFYLWARVPDA LGMSDTEFARALLTQYNVTVLPGSYLARDVNGANPGAQRVRMALVAEAEECEQAAQRI VQFIQSRI" misc_feature complement(2329969..2331057) /locus_tag="Alide_2273" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(2330398..2330400,2330422..2330427, 2330431..2330433,2330530..2330532,2330623..2330625, 2330773..2330775,2330854..2330862)) /locus_tag="Alide_2273" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(2330302..2330304,2330311..2330313, 2330398..2330406,2330551..2330553,2330743..2330745, 2330851..2330853)) /locus_tag="Alide_2273" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(2330422..2330424) /locus_tag="Alide_2273" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(2331242..2331925) /locus_tag="Alide_2274" /db_xref="GeneID:10104330" CDS complement(2331242..2331925) /locus_tag="Alide_2274" /inference="protein motif:TFAM:TIGR01944" /note="KEGG: dia:Dtpsy_1887 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein" /codon_start=1 /transl_table=11 /product="electron transport complex, rnfabcdge type, b subunit" /protein_id="YP_004126897.1" /db_xref="GI:319762960" /db_xref="GO:0009055" /db_xref="GO:0051536" /db_xref="InterPro:IPR007202" /db_xref="InterPro:IPR010207" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="GeneID:10104330" /translation="MALAQASSLPAAALQALAERIDAALPQTQCTRCGYPDCAAYAHA VASGEAGINQCPPGGAQGVARLAAITGRPELPLSAAHGQETPRAVAVIDENWCIGCTL CIKACPTDAILGLNKRMHTVIAPHCTGCELCLPACPVDCIRMENASGQATGWAAWSAP QAEQARTRYRARRERLEREEQQALVAPPAAGAMPRADRPDAKAPADPKHAAIAAALAR ARAQRAVHG" misc_feature complement(<2331449..2331871) /locus_tag="Alide_2274" /note="ferredoxin; Provisional; Region: PRK06991" /db_xref="CDD:180786" misc_feature complement(2331752..2331853) /locus_tag="Alide_2274" /note="Putative Fe-S cluster; Region: FeS; pfam04060" /db_xref="CDD:112857" misc_feature complement(2331590..2331658) /locus_tag="Alide_2274" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene complement(2331941..2333257) /locus_tag="Alide_2275" /db_xref="GeneID:10104331" CDS complement(2331941..2333257) /locus_tag="Alide_2275" /inference="protein motif:TFAM:TIGR01849" /note="KEGG: ajs:Ajs_2063 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein" /codon_start=1 /transl_table=11 /product="polyhydroxyalkanoate depolymerase, intracellular" /protein_id="YP_004126898.1" /db_xref="GI:319762961" /db_xref="InterPro:IPR009656" /db_xref="InterPro:IPR010915" /db_xref="GeneID:10104331" /translation="MLYTLYETQRTLMEPFADLAQAAAKFYSNPLSPFSETQLAHRMS AGYELLFRLGKDYEKPQFGIRTVDVDGVSCAIHERVEIDKPFCELRRFKRFSDDPDTL LKLKEQPVVLVVAPLSGHYATLLRDTVRSMLADHKVYITDWKNARLVPLSEGDFHLDD YVNYVQEFIRHLQQKYGNCHVMSVCQPTVPVLAAVSLMASRGETTPLSMTMMGGPIDA RRSPTAVNNLATQRSFKWFETNVIYRVPSNFPGAGRRVYPGFMQHMGFVAMNPDRHAT SHYDYFKNLIQGDDASAEAHRKFYDEYNAVLDMDANYYLETIKTVFQDYSLVNGTWDV RSPDGKLERVRPQDIADTALLTIEGELDDISGSGQTEAAQGLCSGIAPERRMHYEVKG AGHYGIFSGRRWRKHVYAKVRDFIRANQPGQPAGAVRVRRVRTAAA" misc_feature complement(2332001..2333254) /locus_tag="Alide_2275" /note="polyhydroxyalkanoate depolymerase, intracellular; Region: PHB_depoly_PhaZ; TIGR01849" /db_xref="CDD:130908" misc_feature complement(2332001..2332621) /locus_tag="Alide_2275" /note="PHB de-polymerase C-terminus; Region: PHB_depo_C; cl14907" /db_xref="CDD:196868" gene complement(2333433..2334491) /locus_tag="Alide_2276" /db_xref="GeneID:10104332" CDS complement(2333433..2334491) /locus_tag="Alide_2276" /inference="protein motif:PFAM:PF04607" /note="PFAM: RelA/SpoT domain protein; KEGG: dia:Dtpsy_1885 RelA/SpoT domain protein" /codon_start=1 /transl_table=11 /product="rela/spot domain protein" /protein_id="YP_004126899.1" /db_xref="GI:319762962" /db_xref="InterPro:IPR007685" /db_xref="GeneID:10104332" /translation="MSSAIQPAHEESVFHAFYARELPALQQACAFFMALLQSILSQAR HIDIAKIEGRVKDRDECLRKFSRKYRTALEESGTPYEIHHYITDLIGVRVVCLYEDEL EKVAQIVQSHFDVIDVTDKVSAMEGTEASFGYKGLHLDLRLNAEQAALPQNAAYANQP FELQVRTIIQDAWSVLDHKIKYKKSIPAQLKRRINVLSALFELADREFRQIRDATAAE LQRASDETAEPEPGTARAPAPGSELDAFTFLKIANHFFKDAEFDARKVDQFVDDIRAW SPGITRSRFNALMRETLATVKRYKQFYEEHNPEGSFTPFTVIRHCLYLGDKQLFRRAL RNSSREAFEAWLQGAPYV" misc_feature complement(2333964..2334401) /locus_tag="Alide_2276" /note="Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399" /db_xref="CDD:143389" misc_feature complement(order(2333967..2333972,2333994..2333996, 2334000..2334002,2334006..2334008,2334078..2334080, 2334090..2334092,2334096..2334098,2334114..2334116, 2334129..2334131,2334135..2334137,2334213..2334215, 2334225..2334230,2334324..2334326,2334330..2334332)) /locus_tag="Alide_2276" /note="synthetase active site [active]" /db_xref="CDD:143389" misc_feature complement(order(2333970..2333972,2334000..2334002, 2334006..2334008,2334078..2334080,2334090..2334092, 2334096..2334098,2334114..2334116,2334129..2334131, 2334135..2334137,2334330..2334332)) /locus_tag="Alide_2276" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143389" misc_feature complement(order(2334006..2334008,2334228..2334230)) /locus_tag="Alide_2276" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143389" gene complement(2334558..2335508) /locus_tag="Alide_2277" /db_xref="GeneID:10104333" CDS complement(2334558..2335508) /locus_tag="Alide_2277" /inference="protein motif:TFAM:TIGR00742" /note="KEGG: dia:Dtpsy_1883 tRNA-dihydrouridine synthase A; TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS" /codon_start=1 /transl_table=11 /product="tim-barrel protein, yjbn family" /protein_id="YP_004126900.1" /db_xref="GI:319762963" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR001269" /db_xref="InterPro:IPR004653" /db_xref="InterPro:IPR018517" /db_xref="GeneID:10104333" /translation="MSVAPMMDWTDRHCRHLHRLLSRHALLYTEMVTTGALLHGDVPR HLRFGEAEHPVALQLGGSEPADLAHSARLGAQWGYDEINLNCGCPSERVQRGAFGACL MNEPRLVADCVKAMVDVVDMPVTVKHRIGIDQTEGYGFVRDFVGTVADAGCRVFIVHA RNAWLKGLSPKENREIPPLRYEVAARLKSDFPQLTIAINGSLQTDAAVLEQLALVDGV MVGREAYHNPWWLTRWDELFFGAKPGTLTREQVEEEMVAYMEREAAAHGTHWYAVARH MLGLRNGLPGARRWRQVWSDHRLKHLPAREVMALARIRPA" misc_feature complement(2334561..2335508) /locus_tag="Alide_2277" /note="tRNA-dihydrouridine synthase A; Provisional; Region: PRK11815" /db_xref="CDD:183323" misc_feature complement(2334792..2335508) /locus_tag="Alide_2277" /note="Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and...; Region: DUS_like_FMN; cd02801" /db_xref="CDD:73368" misc_feature complement(order(2334843..2334848,2334906..2334908, 2334912..2334914,2335032..2335034,2335128..2335130, 2335254..2335256,2335335..2335337,2335416..2335418, 2335491..2335499)) /locus_tag="Alide_2277" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73368" misc_feature complement(order(2334843..2334845,2334906..2334911, 2335023..2335028,2335032..2335037,2335122..2335124, 2335128..2335130,2335242..2335247,2335335..2335337)) /locus_tag="Alide_2277" /note="active site" /db_xref="CDD:73368" misc_feature complement(order(2335026..2335028,2335032..2335034, 2335122..2335124,2335245..2335247)) /locus_tag="Alide_2277" /note="catalytic residues [active]" /db_xref="CDD:73368" misc_feature complement(order(2334906..2334911,2335023..2335025, 2335035..2335037,2335128..2335130,2335242..2335244)) /locus_tag="Alide_2277" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73368" gene 2335793..2336254 /locus_tag="Alide_2278" /db_xref="GeneID:10104334" CDS 2335793..2336254 /locus_tag="Alide_2278" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC domain protein dehydratase; KEGG: pde:Pden_4680 dehydratase" /codon_start=1 /transl_table=11 /product="maoc domain protein dehydratase" /protein_id="YP_004126901.1" /db_xref="GI:319762964" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10104334" /translation="MKDAQAAKPLYLEDLAVGDVFVSPPHALDAQQIVEFASQFDPQP FHLDEQAAKGSFFEGLAASGWHTVAITMRLLVQSFPLARGVIGAGAELSWSQPTRPGD VLRVTSTIKDIAPSRSKPDRAIVVLESVTSNQHGAPLQKLVSKVVAFKRTA" misc_feature 2335826..2336233 /locus_tag="Alide_2278" /note="YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal...; Region: YdeM; cd03454" /db_xref="CDD:48049" misc_feature order(2335901..2335903,2335913..2335915,2335919..2335921, 2335928..2335930,2335973..2335975,2335982..2335987) /locus_tag="Alide_2278" /note="putative active site [active]" /db_xref="CDD:48049" misc_feature order(2335913..2335915,2335919..2335921,2335928..2335930, 2335982..2335984) /locus_tag="Alide_2278" /note="putative catalytic site [active]" /db_xref="CDD:48049" gene 2336258..2336866 /locus_tag="Alide_2279" /db_xref="GeneID:10104335" CDS 2336258..2336866 /locus_tag="Alide_2279" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: pde:Pden_4681 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein tetr" /protein_id="YP_004126902.1" /db_xref="GI:319762965" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10104335" /translation="MGRSTQEKALENRARIVDRANALFRQRGVDNVSVSDVMGACGMT VGGFYKHFDSKDALVAQACGLAFTQALKAWDEVYENADTNARERNLELVRRYINNRSP ERRCPILAFAPHVATGDAAGPAVRAYQAGIHELFEKFVEGAGTEGEPPVPAASREAMA LFAAMVGARVLNQAAGNAGWVRDIEDAVIAAAASLSPKNEKP" misc_feature 2336258..2336842 /locus_tag="Alide_2279" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 2336303..2336437 /locus_tag="Alide_2279" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 2337055..2338179 /locus_tag="Alide_2280" /db_xref="GeneID:10104336" CDS 2337055..2338179 /locus_tag="Alide_2280" /inference="protein motif:PFAM:PF03435" /note="PFAM: Saccharopine dehydrogenase; KEGG: dia:Dtpsy_1846 saccharopine dehydrogenase" /codon_start=1 /transl_table=11 /product="saccharopine dehydrogenase" /protein_id="YP_004126903.1" /db_xref="GI:319762966" /db_xref="InterPro:IPR005097" /db_xref="GeneID:10104336" /translation="MATPQPHAAPTGGRSVLVLGAGHIGHAIALLLSDAGGYALQVAD RNLSSLQRVQALAGVATVHVPDAAALEAAVAGCHAVLNALPFHQAAAVATLCARHGVH YFDLTEDVASTRAIRALAAGARSVLMPQCGLAPGFIGIVGNDLAGRLDGGAQALRLRV GALPRYPQGALRYSLTWSTEGLINEYCNPCEAIVDGQRTSVPALDGLETLLIDGVEYE AFSTSGGLGTLTRTWEGRLQQLDYKTIRYPGHHAAVRLLLHELRLRERRELLRELLEG AIAATRQDVVVILAVASGLRGGRLVQESYAARILGRRLRGQALSAIQHTTAAAICAAL DLVSSGRLPQAGFVRQEQIALADFLANRFGSVYDVEGTQA" misc_feature 2337094..2338146 /locus_tag="Alide_2280" /note="Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]; Region: LYS9; COG1748" /db_xref="CDD:31934" gene complement(2338176..2340011) /locus_tag="Alide_2281" /db_xref="GeneID:10104337" CDS complement(2338176..2340011) /locus_tag="Alide_2281" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_1847 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="amp-dependent synthetase and ligase" /protein_id="YP_004126904.1" /db_xref="GI:319762967" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020459" /db_xref="InterPro:IPR020845" /db_xref="GeneID:10104337" /translation="MARMTSTLPDLHAVQTLPELLAFRAALTPDREAYRQCDSATGHW TSLSWSQAQERVRQWSRAIAASGLPQGARIAVLLPNGLDAMSIDQAAMATGCVPVPLH AIDNPGSIAYILQDAEVSLLVVQDAAQWERVRGVGLPLPHLMGVVATAQAPAQDAGPD AVPVAPLSAWLQHAAADTPLPPPPGPEDLAAIVYTSGTTGKPKGVMLTHANVIADVKA VLQRIVPTPDDVFLSFLPLSHTFERTGGYYLPVASGSCVAYARSVAQLADDMLTVRPT VLVSVPRIYERVHAKLIETLSSSPWKMQLFQAAQAVGWRRFCAAQRLPAPQDDGAGSW MRALPWPLLRALVARPLLARFGGRVRVAVSGGAPLPPAIAQCFLGLGLPLVQGYGMTE TTPVVSVNALDDNDPSTVGRALPGVEVRIGENRELQVRGPIVMKGYWKRPEDTARAIG EGGWLGTGDQAEIVDGRIRILGRIKEIIVTSTGEKVPPADLELAITADPLFEQAFVVG EQRPFIACVAAVQAEEWRQLAGQLGLDPDDPASLAHPSATRAALARIEKLAAGFPRYA VPRAVHLVREPWTIENALMTPTLKLKRNSLMAHYADAIEAMYQRR" misc_feature complement(2338179..2340011) /locus_tag="Alide_2281" /note="Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Region: FAA1; COG1022" /db_xref="CDD:31225" misc_feature complement(<2339385..2339870) /locus_tag="Alide_2281" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature complement(2338284..>2338910) /locus_tag="Alide_2281" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(2340138..2340773) /locus_tag="Alide_2282" /db_xref="GeneID:10104338" CDS complement(2340138..2340773) /locus_tag="Alide_2282" /inference="protein motif:PFAM:PF07729" /note="KEGG: dia:Dtpsy_1848 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH" /codon_start=1 /transl_table=11 /product="gntr domain protein" /protein_id="YP_004126905.1" /db_xref="GI:319762968" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10104338" /translation="MKTVPLPRQALYEEVAELLRQRIFRQELEPGSWIDELKIAEEIG ISRTPLREALKVLAAEGLVTMKVRRGAYVTEMSEKDLRDVYHLLALLESDAAGVVAAA ATPQQLGELEALHAELGAAAGDRERFFTLNERFHLRLLELADNRWRGQMVADLRKVMK LSRHHSLFKQGRIEDSLAEHEALMAALRARDAQGAAQAMRAHFAHGLEAAG" misc_feature complement(2340552..2340743) /locus_tag="Alide_2282" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(2340561..2340572,2340576..2340581, 2340609..2340611,2340618..2340623,2340627..2340641, 2340663..2340668,2340669..2340671,2340738..2340740)) /locus_tag="Alide_2282" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(2340225..>2340404) /locus_tag="Alide_2282" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene complement(2340787..2341719) /locus_tag="Alide_2283" /db_xref="GeneID:10104339" CDS complement(2340787..2341719) /locus_tag="Alide_2283" /inference="protein motif:PFAM:PF00682" /note="PFAM: pyruvate carboxyltransferase; KEGG: sno:Snov_3532 pyruvate carboxyltransferase" /codon_start=1 /transl_table=11 /product="pyruvate carboxyltransferase" /protein_id="YP_004126906.1" /db_xref="GI:319762969" /db_xref="GO:0003824" /db_xref="InterPro:IPR000891" /db_xref="GeneID:10104339" /translation="MLRSVTVTEVGPRDGLQLIAKPVSTEAKIAWIKALHAAGLRDIE VGSFVSPRLVPQMADSAAVVAQALRIEGLKVYALAANLKGAMAAYEAGAHIIVIPLSA SDRHSRANVNKGTLEHIAAIGDIIEWLRAQPRPVRIDCVTASAFGCSVAGTVPLGDVV AAAKALALAGADRITLADTVGHAHPALVRDTVRAVQDAVGPLLQKLHLHDTMGLGLAN ALMGLQEGIREFDACMGGLGGCPFAPGASGNIVTEDLVFMLESMGFATHVDLPALLAA RAAIAPHLPAQALRGGVPVAGIPSTYQPASGCMH" misc_feature complement(2340913..2341701) /locus_tag="Alide_2283" /note="3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; Region: DRE_TIM_HMGL; cd07938" /db_xref="CDD:163676" misc_feature complement(order(2340973..2340975,2341093..2341095, 2341099..2341101,2341423..2341425,2341573..2341575, 2341579..2341581,2341669..2341671,2341678..2341683)) /locus_tag="Alide_2283" /note="active site" /db_xref="CDD:163676" misc_feature complement(order(2341588..2341590,2341678..2341683)) /locus_tag="Alide_2283" /note="catalytic residues [active]" /db_xref="CDD:163676" misc_feature complement(order(2340973..2340975,2341093..2341095, 2341099..2341101,2341678..2341680)) /locus_tag="Alide_2283" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163676" gene complement(2341722..2342687) /locus_tag="Alide_2284" /db_xref="GeneID:10104340" CDS complement(2341722..2342687) /locus_tag="Alide_2284" /inference="similar to AA sequence:KEGG:Aave_3152" /note="KEGG: aav:Aave_3152 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126907.1" /db_xref="GI:319762970" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104340" /translation="MQRRILIAGLMATAAFAHAQPPAPFPAKPIRVIIPSTPGGGTDF IGRNLATHLAEAKGWVMVPDNRPGAGTALGLAELARAAPTGYDIVIGQSDNVSLIPLL MKTSYDPIKDLQPVSLLATTPMVLLVTADSPYKTLAQLIDAARKEPGKISYGTSGTGG SVHISVEMLQAAAGFKMQHVPYKGSSPALADLMGGHLQVAGASISSATNLIQSGKVRA LAVTSAARNASLPDVPTVAESGYKDYSFVTYYGVFAPAGTPADVVKTLNDAVVQVMAR PDVRAAYAKQGLEASSTTPQEFSRLIEKDIAKAKATIQAAHIQVQ" sig_peptide complement(2342628..2342687) /locus_tag="Alide_2284" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.978 at residue 20" misc_feature complement(2341731..2342600) /locus_tag="Alide_2284" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2341734..2342555) /locus_tag="Alide_2284" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2342725..2343948) /locus_tag="Alide_2285" /db_xref="GeneID:10104341" CDS complement(2342725..2343948) /locus_tag="Alide_2285" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_1079 L-carnitine dehydratase" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004126908.1" /db_xref="GI:319762971" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10104341" /translation="MTSPSASAPSPYLAPDDLPLKGVRVLEISHMIMGPATGMALADL GAEVIKVEPVEGDRTRRLKSAGIGYFPVFNRNKQSFAVDLKSAEGRKLVQDLADKADI VLENFRDDSLLQYGLDHASVRARNPRAIYVSLKGFLSGPYQERTALDEVVQMMGGMAY INGSDDRPQRAAPSVNDILGGQFGVIGALSALHERERTGVGKYVRAGLFETNLLLVAQ FITQFELTGTPALPFGSKREPPWGVYDLFTTKDGARVFVAVVSDAQWRTFAATFMPAG WAEDARLFSAIDREAARPWVVPAVAEVLKNWNSADLCEALEKAKLSYAPVNQPHDLLK DPHLTQGGALMPTLLPTGEHVSTPALPLEFDGLKVGKRADPPQVGEHTVAILKDLGLD DEAIALLRQHGKIGG" misc_feature complement(2342734..2343894) /locus_tag="Alide_2285" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(2344052..2345488) /locus_tag="Alide_2286" /db_xref="GeneID:10104342" CDS complement(2344052..2345488) /locus_tag="Alide_2286" /inference="protein motif:PFAM:PF09856" /note="KEGG: rpt:Rpal_2644 transcriptional regulator, XRE family; PFAM: Protein of unknown function DUF2083,transcriptional regulator; protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126909.1" /db_xref="GI:319762972" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR010359" /db_xref="InterPro:IPR018653" /db_xref="GeneID:10104342" /translation="MGAHLKTLREQRGLTQAALAQALKVSPSYLNQIENNQRPLTVNV LLRLQAAFGIDLQQFSEDSQARQLGQLRSALADMPGGDQVPLAETRILAEQLPAATRV LLGLHKRIRAAEERLSVIAENTDSGHAAHATSAPVQPYEEVREFFYAGHQHLALLDEQ AEQLYLQLHPENTDPHAPHAARLVAALEQRLRSLHGITVLRAAGSPAVEQPVRMLERA SHQLRLGAGLSAGQQAFQLGIQLALLESGPTIDGFTNAANFGSDEARALARIGFANHF AAALLLPNRLFQKTADELRYDIDLLGERFGVGFETVGHRLSTMRHASPHSIPFFFVRV DRAGNMSKRQSSVDFHFSRTGGTCPLWNVYDAFSQPGKILTQLARMPDERTYLWIART VEHRRGGYGTPGRIFSVALGCDARHAHRLVYGDGLGLDAPERAVPIGSGCKVCDRESC VQRAFPALGRPLSIDPNARRFAPYAPAS" misc_feature complement(2345159..2345488) /locus_tag="Alide_2286" /note="Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396" /db_xref="CDD:31586" misc_feature complement(2345312..2345485) /locus_tag="Alide_2286" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature complement(order(2345384..2345386,2345459..2345461, 2345471..2345473)) /locus_tag="Alide_2286" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(order(2345387..2345389,2345462..2345464)) /locus_tag="Alide_2286" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature complement(order(2345381..2345386,2345396..2345398, 2345405..2345407,2345438..2345443)) /locus_tag="Alide_2286" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(2344067..2345074) /locus_tag="Alide_2286" /note="Predicted transcriptional regulator [General function prediction only]; Region: COG3800" /db_xref="CDD:33594" misc_feature complement(2344538..2344906) /locus_tag="Alide_2286" /note="Domain of unknown function (DUF955); Region: DUF955; cl01076" /db_xref="CDD:154183" misc_feature complement(2344067..2344510) /locus_tag="Alide_2286" /note="Predicted transcriptional regulator (DUF2083); Region: DUF2083; pfam09856" /db_xref="CDD:150518" gene 2345619..2347760 /locus_tag="Alide_2287" /db_xref="GeneID:10104343" CDS 2345619..2347760 /locus_tag="Alide_2287" /EC_number="5.4.99.2" /inference="protein motif:TFAM:TIGR00641" /note="TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: dia:Dtpsy_1849 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA mutase, large subunit" /protein_id="YP_004126910.1" /db_xref="GI:319762973" /db_xref="GO:0004494" /db_xref="GO:0031419" /db_xref="InterPro:IPR006098" /db_xref="InterPro:IPR006099" /db_xref="InterPro:IPR006158" /db_xref="InterPro:IPR006159" /db_xref="GeneID:10104343" /translation="MVFDFGDLQRWNKAASKSAPQGDAENLNWTTPDGITVKPLYTAA DLEGLPYTNTLPGFEPYLRGPQATMYAVRPWTIRQYAGFSTAEESNAFYRKALAAGGQ GVSVAFDLATHRGYDSDHPRVTGDVGKAGVAIDSVEDMKILFDQIPLDKVSVSMTMNG AVLPVLAGYVVAAEEQGVSQDKLSGTIQNDILKEFMVRNTYIYPPKPSMRIIGDIIEY TSKNMPKFNSISISGYHMQEAGANQALELAFTLADGKEYVKTAIAKGMDVDEFAGRLS FFWAIGMNFYLEIAKMRAARLLWCRIMKGFDARNPKSLMLRTHCQTSGWSLTEQDPYN NVVRTTIEAMAAVFGGTQSLHTNALDEAIALPTEFSARIARNTQLIIQEETHITNVID PWAGSYMMEKLTQDMADAAWKIIEEVEAMGGMTAAVDSGWAKLKIEAAAAEKQARIDS GKEVIVGVNKYKLAKEDPVDILEVDNVKVRESQIARLNAIKAKRDQSAVDQALAALTS AAESGQGNLLDLSIKAIRLRATVGEVSDALEKSFGRHRADTQKVTGVYAAAYDSAEGW EKLKGEIDAFAESQGRRPRVMIAKLGQDGHDRGAKVVSTAFADLGFDVDIGPLFQTPE ECARQAIENDVHAVGVSTLAAGHKTLVPAIIQALKEQGADDIIVFVGGVIPQQDYEYL YNAGVKGIYGPGTPVPASAKDVLEQIKKAIA" misc_feature 2345619..2347751 /locus_tag="Alide_2287" /note="methylmalonyl-CoA mutase; Reviewed; Region: PRK09426" /db_xref="CDD:181846" misc_feature 2345640..2347247 /locus_tag="Alide_2287" /note="Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Alpha subunit-like subfamily; contains proteins similar to the alpha subunit of Propionbacterium shermanni MCM, as well as human and E. coli MCM. Members of this subfamily...; Region: MM_CoA_mutase_alpha_like; cd03679" /db_xref="CDD:58154" misc_feature order(2345814..2345816,2345820..2345825,2345835..2345837, 2345844..2345846,2345850..2345852,2345856..2345858, 2345931..2345933,2345940..2345942,2345946..2345948, 2345955..2345957,2346006..2346008,2346081..2346083, 2346087..2346089,2346174..2346176,2346207..2346212, 2346321..2346323,2346330..2346332,2346438..2346440, 2346444..2346446,2346450..2346452,2346567..2346569, 2346573..2346575,2346579..2346581,2346588..2346593, 2346672..2346674,2346699..2346701,2346708..2346713) /locus_tag="Alide_2287" /note="active site" /db_xref="CDD:58154" misc_feature order(2345814..2345816,2345820..2345825,2345835..2345837, 2345844..2345846,2345850..2345852,2345856..2345858, 2345931..2345933,2346081..2346083,2346087..2346089, 2346174..2346176,2346210..2346212,2346318..2346323, 2346438..2346440,2346444..2346446,2346450..2346452, 2346567..2346569,2346573..2346575,2346579..2346581, 2346672..2346674) /locus_tag="Alide_2287" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:58154" misc_feature order(2345856..2345858,2345940..2345942,2345946..2345948, 2345955..2345957,2346006..2346008,2346207..2346212, 2346216..2346218,2346330..2346332,2346588..2346593, 2346699..2346704,2346708..2346713) /locus_tag="Alide_2287" /note="coenzyme B12 binding site [chemical binding]; other site" /db_xref="CDD:58154" misc_feature 2347371..2347736 /locus_tag="Alide_2287" /note="methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen...; Region: MM_CoA_mut_B12_BD; cd02071" /db_xref="CDD:30209" misc_feature order(2347395..2347415,2347422..2347424,2347533..2347541, 2347545..2347553,2347635..2347637,2347689..2347691, 2347698..2347700,2347716..2347718) /locus_tag="Alide_2287" /note="B12 binding site [chemical binding]; other site" /db_xref="CDD:30209" misc_feature 2347404..2347406 /locus_tag="Alide_2287" /note="cobalt ligand [ion binding]; other site" /db_xref="CDD:30209" gene 2347777..2348784 /locus_tag="Alide_2288" /db_xref="GeneID:10104344" CDS 2347777..2348784 /locus_tag="Alide_2288" /inference="protein motif:TFAM:TIGR00750" /note="KEGG: dia:Dtpsy_1850 arginine/ornithine transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein" /codon_start=1 /transl_table=11 /product="lao/ao transport system atpase" /protein_id="YP_004126911.1" /db_xref="GI:319762974" /db_xref="InterPro:IPR005129" /db_xref="GeneID:10104344" /translation="MTSHPLLEAITRGAPLVRRRAMAKAITLLESTRPDHRAQADALL TELLPHTGRALRLGISGVPGVGKSTFIEALGIYLIGQGLKVAVLAIDPSSSVSGGSIL GDKTRMERLSMQENAYIRPSPSGGTLGGVAEKTRESLLVCEAAGYDVVIVETVGVGQS ETAVHGMTDMFCVLQLPNAGDDLQAIKKGVMELADLVVINKADIDAAAATRAQAQITS SLRLLGFHGNPEHDPHNAAQWRPRVIQTSALQHQGMEDFWAVVCEFRQMQTANGRLAA RREKQALAWMWERIDFGLKQAFRAHPQVRALLPQMQADVAAGRIAASTAARNLLAAQS G" misc_feature 2347777..2348721 /locus_tag="Alide_2288" /note="membrane ATPase/protein kinase; Provisional; Region: PRK09435" /db_xref="CDD:181855" misc_feature 2347942..2348379 /locus_tag="Alide_2288" /note="The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and...; Region: ArgK-like; cd03114" /db_xref="CDD:48378" misc_feature 2347957..2347983 /locus_tag="Alide_2288" /note="Walker A; other site" /db_xref="CDD:48378" gene 2348841..2350373 /locus_tag="Alide_2289" /db_xref="GeneID:10104345" CDS 2348841..2350373 /locus_tag="Alide_2289" /inference="protein motif:PFAM:PF01039" /note="PFAM: carboxyl transferase; KEGG: ajs:Ajs_2042 carboxyl transferase" /codon_start=1 /transl_table=11 /product="carboxyl transferase" /protein_id="YP_004126912.1" /db_xref="GI:319762975" /db_xref="GO:0016874" /db_xref="InterPro:IPR000022" /db_xref="InterPro:IPR011762" /db_xref="InterPro:IPR011763" /db_xref="GeneID:10104345" /translation="MQTILDQLEKKRELARLGGGQKRIDAQHGKGKLTARERIELLLD EGTFEEWDMFVEHRCADFGMQDNKIPGDGVVTGYGMINGRLVFVFSQDFTVFGGALSE AHAEKICKVMDQAMKVGAPVIGLNDSGGARIQEGVASLGGYADVFQRNVMASGVVPQI SMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPEVVKTVTHEEVTSEELGGALTHT TKSGVADMAFENDVEALLMLRRLYNYLPLNNREKPPVRPSKDPADRMDRSLDTLVPAN PNQPYDMKELILKTVDDGDFFELQPEYAKNIIIGFARMEGQTVGIVANQPLVLAGCLD IKSSIKAARFVRFCDAFNIPVITFVDVPGFMPGTAQEYGGIIKHGAKLLFAYAECTVP KVTVITRKAYGGAYDVMASKHLRGDVNLAWPNAEIAVMGAKGAVEIIFREDKNDPVKL AAREAEYKERFANPFVAGARGFIDDVILPHETRKRICRSLVMLREKKLENPWRKHGNI PL" misc_feature 2348853..2350370 /locus_tag="Alide_2289" /note="methylmalonyl-CoA decarboxylase alpha subunit; Region: mmdA; TIGR01117" /db_xref="CDD:130187" misc_feature 2348934..>2349386 /locus_tag="Alide_2289" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" misc_feature <2349669..>2350184 /locus_tag="Alide_2289" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 2350531..2352579 /locus_tag="Alide_2290" /db_xref="GeneID:10104346" CDS 2350531..2352579 /locus_tag="Alide_2290" /inference="protein motif:TFAM:TIGR00514" /note="KEGG: dia:Dtpsy_1853 carbamoyl-phosphate synthase L chain ATP-binding; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, biotin carboxylase" /protein_id="YP_004126913.1" /db_xref="GI:319762976" /db_xref="GO:0016874" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR001882" /db_xref="InterPro:IPR004549" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011764" /db_xref="GeneID:10104346" /translation="MFTKILIANRGEIACRVIATAKKMGIATVAVYSDADKEARHVKL ADEAVHIGAAPSRESYLQADKIIAAAKQTGAQAVHPGYGFLSENEDFARRVEEEGIVF IGPKHYSIAAMGDKIASKKLAGEAKVSTIPGHNEPIESPEEAVQIAQKIGYPVMIKAS AGGGGKGLRVAFNDKECFEGFTSCRNEARNSFGDDRVFMEKFVQEPRHIEIQVLGDAH GNVVYLNERECSIQRRHQKVIEEAPSPFISDATRKAMGEQAVALAKAVKYQSAGTVEF VVGKDQDFYFLEMNTRLQVEHPVTECITGLDLVELMIRVAAGEKLPLTQADVKRDGWA IECRINAEDPFRNFLPSTGRLVRFTPPQETMFQADTGRKYGVRVDTGVYEGGEIPMYY DSMIAKLIVHGTDRDDAIAKMRAALNGFAIRGINSNIPFQAALLAHPKFVAGQFNTGF IAEHYAHGFVAEDVQHEDPDFLVALAAYMYRRSRARASGISGQLAGHEVQVGEEFVVV VLGTEGKNQYHDVSVTDFENDSGSSVVHIRDKDYRISSTAHLGSIRIQGACNGQGFTA QIERNRPKNPLGLRIVHNGAQIDAIVLTPRRAELLKLMPYKAPPDLSRFLLSPMPGLL VDVAVQPGQKVQAGEKLAVIEAMKMENILFAAQDGVVSKIVAGKGESLAVDQVILEFA " misc_feature 2350531..2352576 /locus_tag="Alide_2290" /note="Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]; Region: COG4770" /db_xref="CDD:34383" misc_feature 2350534..2350845 /locus_tag="Alide_2290" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature 2350873..2351502 /locus_tag="Alide_2290" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 2351536..2351886 /locus_tag="Alide_2290" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" misc_feature 2352376..2352573 /locus_tag="Alide_2290" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature order(2352442..2352444,2352469..2352477,2352496..2352498) /locus_tag="Alide_2290" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature 2352472..2352474 /locus_tag="Alide_2290" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene 2352638..2353099 /locus_tag="Alide_2291" /db_xref="GeneID:10104347" CDS 2352638..2353099 /locus_tag="Alide_2291" /inference="similar to AA sequence:KEGG:Dtpsy_1854" /note="KEGG: dia:Dtpsy_1854 lactoylglutathione lyase" /codon_start=1 /transl_table=11 /product="lactoylglutathione lyase" /protein_id="YP_004126914.1" /db_xref="GI:319762977" /db_xref="GeneID:10104347" /translation="MTRPFKVLGIQQVAIGGTDKARMKTLWVDMLGLAQTGTFQSERE NVDEDILAMGQGPYKVEVDIMQPLDIDKKPAVHATPLNHIGLWIDDLPRAVEWLTAKG VRFAPGGIRKGAAGYDITFLHPKGNDEFPIAGEGVLIELVQAPPEVIAALG" misc_feature 2352665..2353066 /locus_tag="Alide_2291" /note="Methylmalonyl-CoA epimerase (MMCE); Region: MMCE; cd07249" /db_xref="CDD:176672" misc_feature order(2352665..2352667,2352674..2352676,2352680..2352682, 2352701..2352703,2352713..2352718,2352722..2352724, 2352728..2352739,2352800..2352802,2352815..2352817, 2352821..2352823,2352869..2352874,2352878..2352880, 2352884..2352889,2352893..2352895,2352938..2352940, 2352944..2352946,2353001..2353003,2353043..2353048) /locus_tag="Alide_2291" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176672" misc_feature order(2352671..2352673,2352779..2352781,2352824..2352826, 2352857..2352859,2352884..2352886,2352992..2352994, 2352998..2353000,2353055..2353057,2353061..2353063) /locus_tag="Alide_2291" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176672" misc_feature order(2352671..2352673,2352824..2352826,2352884..2352886, 2353055..2353057) /locus_tag="Alide_2291" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176672" gene 2353466..2354539 /locus_tag="Alide_2292" /db_xref="GeneID:10104348" CDS 2353466..2354539 /locus_tag="Alide_2292" /EC_number="2.8.1.6" /inference="protein motif:TFAM:TIGR00433" /note="SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: ajs:Ajs_2045 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein" /codon_start=1 /transl_table=11 /product="biotin synthase" /protein_id="YP_004126915.1" /db_xref="GI:319762978" /db_xref="GO:0004076" /db_xref="InterPro:IPR002684" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR010722" /db_xref="GeneID:10104348" /translation="MTLATTTAPTACAQDAGANQPLHFHPRGPAPSAMAAEGQGWSVQ AVQNLLDLPFMELLWRAQAAHRAHWPEGDVELATLLSVKTGGCPENCGYCPQSAAFDT GVKGQKLMEAEEVVRAAQAAKDAGATRFCMGAAWRAPKDRDIEKMTALIAAVKGLGLQ TCATLGMLQQHQARALRDAGLDYYNHNLDTAPEYYQDVVSTRQYQERLDTLRHVRTAG IGVCCGGIVGMGEAPVHRAGLIAQLANLDPYPESVPINSLVRVPGTPLADSAPVDPLD FVRVIAVARITMPRARVRLSAGRQQLGDAVQALCFLAGANSIFYGDKLLVTGNPDVEA DNRLLARLGLRGTRAQGAQEGAC" misc_feature 2353610..2354455 /locus_tag="Alide_2292" /note="biotin synthetase; Region: bioB; TIGR00433" /db_xref="CDD:161876" misc_feature 2353715..2354314 /locus_tag="Alide_2292" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(2353724..2353726,2353730..2353732,2353736..2353738, 2353742..2353750,2353862..2353864,2353868..2353873, 2353949..2353957,2354024..2354026,2354141..2354143, 2354234..2354239) /locus_tag="Alide_2292" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature 2354225..2354470 /locus_tag="Alide_2292" /note="Biotin and Thiamin Synthesis associated domain; Region: BATS; cl06149" /db_xref="CDD:157061" gene complement(2354623..2355630) /locus_tag="Alide_2293" /db_xref="GeneID:10104349" CDS complement(2354623..2355630) /locus_tag="Alide_2293" /inference="similar to AA sequence:KEGG:Bpro_1449" /note="KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="twin-arginine translocation pathway signal" /protein_id="YP_004126916.1" /db_xref="GI:319762979" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10104349" /translation="MPHASTTFLNRRQLLAGGAAAATAPWLPQARAQAAWPTKPLRLV VPFAPGGSSEIVARAAAAEISKTIGQNMFVDNKPGAAGNIAMQEVANSTDEHTLILGH IGTLAVNPFIFPRLPYDANRDFAPITLLSKVPSLYVVHPDLPVKNLKDFIAYVKGKPG QLNYGSAGNGSAGHLAFEYLKMASGIFMLHVPYRGTGPMLTDLMAGRLQAAAVGAPAL LPFIKAGKLRCIATGTAQRLAQMPDVPTVAEQGFKGFEMTQWYGLIAPSKWPKAHLAR LEAEAVKAARSTLVKEKLAQETALAVGNSSAEFDAFIKAEQARWKPVIERAQIKPEGM G" sig_peptide complement(2355532..2355630) /locus_tag="Alide_2293" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.509 at residue 33" misc_feature complement(2354644..2355534) /locus_tag="Alide_2293" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2354644..2355465) /locus_tag="Alide_2293" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2355752..2356432 /locus_tag="Alide_2294" /db_xref="GeneID:10104350" CDS 2355752..2356432 /locus_tag="Alide_2294" /inference="protein motif:PFAM:PF00072" /note="KEGG: pol:Bpro_1450 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004126917.1" /db_xref="GI:319762980" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10104350" /translation="MRILLAEDERPLGEWLAKALEQGGCRVDWCDDGRLVERALAERD YDALVLDLGLPGRDGGTILRRLRARDERIPVLVLTARDTLGERVRSLNEGADDFLAKP FELAELEARLTALVRRARGSEHPRLACGPLQFDTVTRQFTLSAEPLQLSPREHALLKA LVQRSGEPLTRQQAMDRVFGDDEDVQPSVIDVLLHRLRKRLEGSGVRIHTYRGLGYVL ELDTPGQH" misc_feature 2355752..2356411 /locus_tag="Alide_2294" /note="transcriptional regulatory protein TctD; Provisional; Region: PRK15479" /db_xref="CDD:185376" misc_feature 2355761..2356060 /locus_tag="Alide_2294" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2355770..2355775,2355902..2355904,2355926..2355928, 2355986..2355988,2356043..2356045,2356052..2356057) /locus_tag="Alide_2294" /note="active site" /db_xref="CDD:29071" misc_feature 2355902..2355904 /locus_tag="Alide_2294" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2355911..2355916,2355920..2355928) /locus_tag="Alide_2294" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2356052..2356060 /locus_tag="Alide_2294" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 2356130..2356405 /locus_tag="Alide_2294" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(2356202..2356204,2356259..2356264,2356316..2356318, 2356325..2356327,2356349..2356354,2356379..2356381, 2356394..2356396) /locus_tag="Alide_2294" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 2356398..2357786 /locus_tag="Alide_2295" /db_xref="GeneID:10104351" CDS 2356398..2357786 /locus_tag="Alide_2295" /inference="protein motif:PFAM:PF08521" /note="KEGG: pol:Bpro_1451 histidine kinase; PFAM: Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="two-component sensor kinase domain-containing protein" /protein_id="YP_004126918.1" /db_xref="GI:319762981" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013727" /db_xref="GeneID:10104351" /translation="MSWSWIRQASTRQRLLALLLPAMTLMAAVGLWFTREDAIASTNA AYDRSLLGAIRALDLNVSTASGGLAVELPYRLFEFFQLTAKGSVYFRVATADGLVELG NPDLPAPPTALQPGRPVFYDASYFGENVRVGAFMRALDDAPEGSDSRYLVIQVAEGTA SREQFTAGFVRRAALRDGALLAVLLASVVAVLGVALRPITRLAAQTRSRAPDDLRPIE ADGLPRDIQPLVAAVNQQMERTRQLMDARQSFVDDASHQLRTPLATLRAQLDYALREP DAGRQRLALQALSAALSDAIRAANQLLALARSDTAQALLEPVDLAQLARDVAVELLPL ARTRGVDLGVEGDAGQAWARGDRELLRQALLNITHNAIEHGRGHGVVTLTAGADAQGY WLCVVDDGPGMPPELAGRAGQRFAKGRESRGSGLGLAIARSVIGRHGGTLRLETAPLG QGACVTLWWPLA" sig_peptide 2356398..2356481 /locus_tag="Alide_2295" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.869) with cleavage site probability 0.707 at residue 28" misc_feature 2356482..2356898 /locus_tag="Alide_2295" /note="Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521" /db_xref="CDD:149540" misc_feature 2356986..2357783 /locus_tag="Alide_2295" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature 2357127..>2357225 /locus_tag="Alide_2295" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(2357145..2357147,2357157..2357159,2357169..2357171, 2357178..2357180,2357190..2357192,2357199..2357201) /locus_tag="Alide_2295" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 2357163..2357165 /locus_tag="Alide_2295" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 2357475..2357774 /locus_tag="Alide_2295" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(2357493..2357495,2357505..2357507,2357514..2357516, 2357583..2357585,2357589..2357591,2357595..2357597, 2357601..2357606,2357670..2357681,2357727..2357729, 2357733..2357735,2357751..2357756,2357760..2357762) /locus_tag="Alide_2295" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 2357505..2357507 /locus_tag="Alide_2295" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(2357595..2357597,2357601..2357603,2357670..2357672, 2357676..2357678) /locus_tag="Alide_2295" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 2357783..2358754 /locus_tag="Alide_2296" /db_xref="GeneID:10104352" CDS 2357783..2358754 /locus_tag="Alide_2296" /inference="similar to AA sequence:KEGG:Bpro_1452" /note="KEGG: pol:Bpro_1452 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126919.1" /db_xref="GI:319762982" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104352" /translation="MKAGLLLRALLAWLLLACGAAAQTGPRCIAPAKPGGGFDLTCQA LGRLLHASGQLAQPLPTVYQPGGIGALAFKSSVTQRPGDGGALVAFSSGSLLNLAQGR FGPYDERSVRWLAGMGMDYGVIAVRQDAPYRTLPALVEALRAQPARVVFGAGGSIGSQ DWMKAALLARAAGVSHKVMRFVAFEGGGEAFTALIGGHVQVVPGDAAEVARLVEQGAP IRILAVLAAQRLPGRWARTPTAREQGLDIEWPILRGVYLGPGVSEQAFRHWAGVLERA MQHPAAARELEQFGLQPVALTGAALDAAVRSQMDGYRRMARDFGVMR" sig_peptide 2357783..2357851 /locus_tag="Alide_2296" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.980 at residue 23" misc_feature 2357861..2358751 /locus_tag="Alide_2296" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 2357927..2358712 /locus_tag="Alide_2296" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2358758..2359204) /locus_tag="Alide_2297" /db_xref="GeneID:10104353" CDS complement(2358758..2359204) /locus_tag="Alide_2297" /inference="protein motif:PFAM:PF02566" /note="PFAM: OsmC family protein; KEGG: pna:Pnap_2833 OsmC family protein" /codon_start=1 /transl_table=11 /product="osmc family protein" /protein_id="YP_004126920.1" /db_xref="GI:319762983" /db_xref="InterPro:IPR003718" /db_xref="GeneID:10104353" /translation="MNNELVTVELAQVADYRYENRFGGGVPALFSDEPAPLGSGQGPS PVQLLCAAVGNCLSDSLLFALRKFKQQPEPLHTTVQAEVGRNAEGRLRILQMTATLRL GVPAQQLQHLDRVLGQFESFCTVTQSVGQGIPIAVKVVDAEGSVLK" misc_feature complement(2358785..2359189) /locus_tag="Alide_2297" /note="OsmC-like protein; Region: OsmC; cl00767" /db_xref="CDD:193933" gene complement(2359201..2359494) /locus_tag="Alide_2298" /db_xref="GeneID:10104354" CDS complement(2359201..2359494) /locus_tag="Alide_2298" /inference="protein motif:PFAM:PF00581" /note="KEGG: pna:Pnap_2832 rhodanese domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="YP_004126921.1" /db_xref="GI:319762984" /db_xref="InterPro:IPR001763" /db_xref="GeneID:10104354" /translation="MTTPSARPLVVDVRSPGEFAAGHVAGSINLPLDTLPDAASRLLP ERDAPIVLCCVSGARSDMAAQWLRAQGYTQVTNGGSVGAVALRLGNVIHKENA" misc_feature complement(2359258..2359470) /locus_tag="Alide_2298" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158" /db_xref="CDD:29073" misc_feature complement(2359333..2359335) /locus_tag="Alide_2298" /note="active site residue [active]" /db_xref="CDD:29073" gene complement(2359592..2359801) /locus_tag="Alide_2299" /db_xref="GeneID:10104355" CDS complement(2359592..2359801) /locus_tag="Alide_2299" /inference="similar to AA sequence:KEGG:Pnap_2829" /note="KEGG: pna:Pnap_2829 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126922.1" /db_xref="GI:319762985" /db_xref="GeneID:10104355" /translation="MTSWRVVRIFAGTFILLSLALGIPGSPIFVSQWWLAFTAFIGAN LLQSGLTKWCMLETMLRKLGIQPGC" sig_peptide complement(2359709..2359801) /locus_tag="Alide_2299" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.712) with cleavage site probability 0.467 at residue 31" misc_feature complement(2359616..2359789) /locus_tag="Alide_2299" /note="Protein of unknown function (DUF2892); Region: DUF2892; pfam11127" /db_xref="CDD:192708" gene complement(2359829..2360965) /locus_tag="Alide_2300" /db_xref="GeneID:10104356" CDS complement(2359829..2360965) /locus_tag="Alide_2300" /inference="protein motif:PFAM:PF07992" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: alv:Alvin_1195 FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="fad-dependent pyridine nucleotide-disulfide oxidoreductase" /protein_id="YP_004126923.1" /db_xref="GI:319762986" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10104356" /translation="MTGPARITILGAGFGALSCVRELRRRDARAQITVVAPRAELHYL PSTIWIPGGLRRREDLIVPLAPFFERMRVRHVAAEVTGLDDGGRTVHTTGGAVGNDAL VIATGGRFIKKLPGIEHAITPCEGIAAAEQIRDRLRAMQGGTIAVGFAANPQEQQAVR GGPMFEFLFGIDAQLRREGRRERFELVFFNPSREPGARLGAKTVQGLLAEMARRGIAT HLGHKMVRLEADKVVTEGGEIRADLILFMPGMTGNAWFDATTLPRSPGGLVRADAQCR VEGWQHCYVVGDSGSFPGPDWAPKQAHMADLHARAAAQNLLDGLAGRPQQAGFVPELA CIIDTGTHGTLVLRNPQRTLVLPPLRLMHWAKRAFERRYLRQYR" misc_feature complement(2359994..2360950) /locus_tag="Alide_2300" /note="NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252" /db_xref="CDD:31444" gene complement(2360962..2362254) /locus_tag="Alide_2301" /db_xref="GeneID:10104357" CDS complement(2360962..2362254) /locus_tag="Alide_2301" /inference="protein motif:PFAM:PF07992" /note="PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="fad-dependent pyridine nucleotide-disulfide oxidoreductase" /protein_id="YP_004126924.1" /db_xref="GI:319762987" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10104357" /translation="MAHIVILGAGTGGMPAAYELRATLGASHRITVVNAVEYFQFVPS NPWVAVGWRERKDTTLPIAPSLEKKGIAFIAQRVERIDAAGNALELANGERLAYDYLV ITTGPKLAFDEVPGAGPVDGHTQSICTVDHAEKAWADYQAFLQDPGAAVIGAMPGASC FGPAYEFAFIFNKDLQRRKLRHKVPLTFVTSEPYIGHMGLGGVGDSKSLLESELRGFD IKWITNAKTTRVEAGKMFVTEMDEAGQPKKEHELPFKFSMMLPAFKGVDAVAAVEGLC NPRGFVLIDEYQRSKKYRNIFSAGVCVAIPPVEATPVPTGAPKTGYMIETMVSAIVHN IAAELAGKPEQATARATWNAICLADMGDTGAAFVALPQIPPRNVNWFKKGKWVHLAKV GFEKYFMYKMKHGTAEPIYEKHVLKALGIERLEKHTHP" misc_feature complement(2361034..2362254) /locus_tag="Alide_2301" /note="NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252" /db_xref="CDD:31444" gene complement(2362297..2363718) /locus_tag="Alide_2302" /db_xref="GeneID:10104358" CDS complement(2362297..2363718) /locus_tag="Alide_2302" /inference="protein motif:PFAM:PF02321" /note="PFAM: outer membrane efflux protein; KEGG: pna:Pnap_2830 TolC family type I secretion outer membrane protein" /codon_start=1 /transl_table=11 /product="outer membrane efflux protein" /protein_id="YP_004126925.1" /db_xref="GI:319762988" /db_xref="GO:0005215" /db_xref="InterPro:IPR003423" /db_xref="GeneID:10104358" /translation="MMTIKKIAASAWHKGARAHLGLYVALGLCIAPAARATDLIEAWQ AAWQNDRELAVARAAHGAAQPRRDQAAALWRPGVAMTASAGVASSDTEMRGAQFSAPG MGQSNGVDFGTSVHGGTATRIALQASQPLYNPERRAQQQQLALQADMDDWQWRAAQQA AMLRTAQRYLDLAVAQEALRVLDGQLDAVQKAATEAQDRFDMGAAPITAVHEARAQRA NLEAQRLAAQADLDVKRRQLADATGLPAASLDARLPAAAWAGAAQALAVWQEQADAGN PGIRLQQLAADVARAEADKHRAAASARVELVAQAAQDRLSGSGDFGGGARNKDTRAML GVQLTVPLYTGGYRSAKEEESLAQWNQAQAQLDATREQVGRQVHAAWLGLQAGAQRVQ ALQEALAASLARQDATRTGYEVGHRTLLDVLHADNDTAATRLALAQARSALLLHRLQL AQLAGQLDEAVLRQASQALAGAP" misc_feature complement(2362990..2363598) /locus_tag="Alide_2302" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(2362435..2362917) /locus_tag="Alide_2302" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(2363715..2366948) /locus_tag="Alide_2303" /db_xref="GeneID:10104359" CDS complement(2363715..2366948) /locus_tag="Alide_2303" /inference="protein motif:PFAM:PF00873" /note="PFAM: acriflavin resistance protein; KEGG: pna:Pnap_2828 acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="YP_004126926.1" /db_xref="GI:319762989" /db_xref="GO:0005215" /db_xref="InterPro:IPR001036" /db_xref="GeneID:10104359" /translation="MDDRKHSLGISGRIAQAFQAAQITPLLALLALLLGLFAVLVTPR EEEPQIDVTMANVIVPFPGASVADVEQMIATPAEQVLSQMLGVEHVTSVSRPGVAVLT VQFKVGVHRNDALVRLHDTLRSNADWLPRGLGAMEPIIRPKGIDDVPVVTLTLYSHDQ DTGAFALERVAHSMEAELMRVPGTRTVATVGGPGRAVRVELDAARMAGSGVTVDALRQ ALQSANQGLPVGELLSGDRSVSIEAGPFLAHAQEVADIVVGNRGGKPVFLKDVARVED GPLPATRYVWHAQVEDGKASEYPAVTLAVTKKAGANAIDVARAVMQRAAELRGTVIPA DVQVAETRDYGATANDKAQKLIQKLLFATASVVALVFVALGRREALIVGVAVGLTLTA TLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHQALHPEKTLLQLIPGAV DEVGGPTILATFTVIAALLPMAFVTGLMGPYMAPIPINASMGMLLSLAVAFTVTPWLA RLWMKGHGGQAQAHTGLAARLAPVFTRIFRPLLDDRHGRRNRSLLGLAVAGLIAVSLV LPVLGWVQLKMLPFDNKSEFQVIVDMPAGTPPERTAAVLHELGAYLATVPEVTDYQAY AGTAGPINFNGLVRQYDLRSGGEVGDLQVNLLDKHERKDQSHAIAMRVRPALQDIGRR LGANVKVVEVPPGPPVLSPIVAEIYGPDAAGRRQVAKEVRAVLQETGGIVDLDDSAIA DAPRKLVLVDRRKAALMGVPQGSIVSALHAGLAGESVTWLRDASKYPTPVVLRLPAEQ QGSLDQLLQLPVRTSQGGTVPIRELVTVTDTLREQPVYHKDLLPVNLVVADMAGKVDS PLYGMFAARAAIADITAPDGGRIEEYFISLPSDPYRGYGLKWDGEWQITYETFRDMGA AYGVGLILIYLLVVAHFGSYLTPLIIMAPIPLTIIGVMPGHALLGAQYTATSMIGMIA LAGIIVRNSILLVDFIRLQVRSGMEFKQAIVQSAITRAQPIMLTGLAAMLGAFFILDD PIFNGLAISLIFGIAVSTVLTLVVIPILYFMAYRHHVDRVRGQGAAQ" misc_feature complement(2363772..2366822) /locus_tag="Alide_2303" /note="Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841" /db_xref="CDD:31183" misc_feature complement(2365521..>2365901) /locus_tag="Alide_2303" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" misc_feature complement(2363802..>2364113) /locus_tag="Alide_2303" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" gene complement(2366950..2367990) /locus_tag="Alide_2304" /db_xref="GeneID:10104360" CDS complement(2366950..2367990) /locus_tag="Alide_2304" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: pna:Pnap_2827 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein" /codon_start=1 /transl_table=11 /product="efflux transporter, rnd family, mfp subunit" /protein_id="YP_004126927.1" /db_xref="GI:319762990" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10104360" /translation="MRHRLWLLPVLAALSGLPFVQAAEPAPLTYHAVQPTQAGWLSSD AKVEAVRDTLLSAQVAGAVIALHVKAGDRVRAGQELLRIDARMASQGAAASQAQVAAA QASLQVAGKEYERQKQLFAKRYISQAALDAAEAQWRAAQAQVQALQAQAGVAATQSGL HVLRAPYAGVVAGVPVALGDMAMPGRPLVSVYDPALLRVTASLAQEQAQRLRSGGGVQ VELPGLMDKRLDIAAAQVQVLPTADPLSHTVPVRVQLPADLPGALPGSFARLWWQGGE ADAGARVLVPAKAVVRRAEMTGVYVRGGNGQPQLRQVRLGLPQGEMVEVLSGLRAGDQ VALEPQAAAKVR" sig_peptide complement(2367922..2367990) /locus_tag="Alide_2304" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.975 at residue 23" misc_feature complement(<2367739..2367987) /locus_tag="Alide_2304" /note="macrolide transporter subunit MacA; Provisional; Region: PRK11578" /db_xref="CDD:183211" misc_feature complement(2366968..2367858) /locus_tag="Alide_2304" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 2368090..2368428 /locus_tag="Alide_2305" /db_xref="GeneID:10104361" CDS 2368090..2368428 /locus_tag="Alide_2305" /inference="protein motif:PFAM:PF01022" /note="KEGG: pna:Pnap_2826 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR" /codon_start=1 /transl_table=11 /product="regulatory protein arsr" /protein_id="YP_004126928.1" /db_xref="GI:319762991" /db_xref="GO:0003700" /db_xref="InterPro:IPR001845" /db_xref="GeneID:10104361" /translation="MKELPPEALEQVAAYFQVLAEPTRLRILNLLRQGEHNVGELAQA CGYTAANISRHLSLMTKQGIVAREGRGTSVYYRLTDESVDALCDLVCGNIARRLEQAS ETNSAFRARL" misc_feature 2368135..2368329 /locus_tag="Alide_2305" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature order(2368135..2368140,2368144..2368146,2368153..2368155, 2368162..2368167,2368174..2368179,2368186..2368188, 2368276..2368278) /locus_tag="Alide_2305" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature order(2368138..2368143,2368153..2368161,2368198..2368206, 2368231..2368242,2368246..2368251,2368258..2368263, 2368267..2368272,2368288..2368296,2368309..2368317) /locus_tag="Alide_2305" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature order(2368198..2368200,2368207..2368209) /locus_tag="Alide_2305" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene complement(2368437..2368650) /locus_tag="Alide_2306" /pseudo /db_xref="GeneID:10104362" gene complement(2368830..2369615) /locus_tag="Alide_2307" /db_xref="GeneID:10104363" CDS complement(2368830..2369615) /locus_tag="Alide_2307" /inference="protein motif:PFAM:PF03328" /note="PFAM: HpcH/HpaI aldolase; KEGG: tjr:TherJR_2256 2-dehydro-3-deoxyglucarate aldolase" /codon_start=1 /transl_table=11 /product="hpch/hpai aldolase" /protein_id="YP_004126929.1" /db_xref="GI:319762992" /db_xref="GO:0016830" /db_xref="InterPro:IPR005000" /db_xref="GeneID:10104363" /translation="MEIRHPLDTRLSGLLRGNSRLRGVFSGLPSPAIVEMCAYAGFEF IIIDNEHGCADLETTENMLRAARASGIIAVVRCLPHDLSRVLDMGAGAVQIPMVSTAT QARELVEQVRYPRVGRRGSAFSSRAAGYGAFGGMEHTTRSNEGIALIPMIETPEGVEN AQVIASVEGVDAVFVGPNDLAHAMGYDNNWTSQPVEAAIEKALRAIASTGKCAGTVAL TPEAEDKYAAWGARYFANVATSIITQALRKAASRGQDGISIQY" misc_feature complement(2368860..2369543) /locus_tag="Alide_2307" /note="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]; Region: HpcH; COG3836" /db_xref="CDD:33628" misc_feature complement(2368860..2369537) /locus_tag="Alide_2307" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(2369651..2370349) /locus_tag="Alide_2308" /db_xref="GeneID:10104364" CDS complement(2369651..2370349) /locus_tag="Alide_2308" /inference="similar to AA sequence:KEGG:RPA2008" /note="KEGG: rpa:RPA2008 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126930.1" /db_xref="GI:319762993" /db_xref="GeneID:10104364" /translation="MLTPELIQTLRAVDTPTICNALEIAMGSRVAHGFTYGALVAAPK PLPAMVGIARTARIRASTPSQLDAATMRGTRLAYYRHVASHPQGPVIVVMQDMDDRPG TGSFWGEVNSAVHEGLGVGGVLTNGSVRDIGDLSPTFPILAGSVGPSHAHVHIVDFGQ PVEVFGLQVNDGDLIHADRHGAVIIAPRYLKQMPECIDLVKRKEAPLLEAARSGKFDL GMLEEAMLHADEIH" misc_feature complement(<2369780..2370349) /locus_tag="Alide_2308" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene complement(2370359..2371375) /locus_tag="Alide_2309" /db_xref="GeneID:10104365" CDS complement(2370359..2371375) /locus_tag="Alide_2309" /inference="similar to AA sequence:KEGG:RALTA_B0210" /note="KEGG: cti:RALTA_B0210 conserved hypothetical protein; periplasmic receptor protein, UPF0065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126931.1" /db_xref="GI:319762994" /db_xref="InterPro:IPR000834" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10104365" /translation="MFDSFKFKRRRVLSALKAAVLGASLGSVAAFAQTAGPQGYPHTG RVVIVVPFAPGGATDIIGRLIADELGKRWGTAVVVENKAGAGGGIGTEYVARAKPDGY TLLLGTQTALAVNPHLLKKISYDVEKDFAPITELADTPLVLLASKKSGARNVQELVAA IKAKPDAVSYGTSGNGTSQHLTTLMMLERIGAKAVHVPYKGSSQSLVDLAGNQIDMQF DNMATALAFAKNGQATALAVTSRKRTPLQPDLPTLDEAGVPGFEAVTWLGLLAPAGTP APVVSFLNKEVVAVLKSEGVKERMAAQGFSPRPMTADAFRQFIREETVKFSNLIKANN LAID" sig_peptide complement(2371277..2371375) /locus_tag="Alide_2309" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 at residue 33" misc_feature complement(2370371..2371330) /locus_tag="Alide_2309" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2370371..2371195) /locus_tag="Alide_2309" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2371400..2372392) /locus_tag="Alide_2310" /db_xref="GeneID:10104366" CDS complement(2371400..2372392) /locus_tag="Alide_2310" /inference="similar to AA sequence:KEGG:Bpet3225" /note="KEGG: bpt:Bpet3225 secreted protein" /codon_start=1 /transl_table=11 /product="secreted protein" /protein_id="YP_004126932.1" /db_xref="GI:319762995" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104366" /translation="MSINQLRRRSIGLALAMVSTIGWQSASAQTEAWPSKPVRYIVPF STGGVSDGVARLIAQKLGERLGQPVVVENRPGVSGIVGTQAAARSPADGYTIMGGTIT THAVNPFFNENLGYDPVKDFAPVNLVGMVSNVLVVPAGSRFNSVAEITAELKARPESL TYGTAGAGTSQHLSGQLYQSLTGTKLRQISYKGGSQAMVDLVGGQIDMVFETVAAARP MIDGKRVKVLGVTSKKALRSLPGVPSLDEAGVTGFEMQSWQGVFAPAGTPKPIVERLG KEIAAIVASPDMQERLRNLGVEPDGRTAEPFAAFQRSEIAKWEKVIRDARIKAE" sig_peptide complement(2372306..2372392) /locus_tag="Alide_2310" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.894 at residue 29" misc_feature complement(2371418..2372377) /locus_tag="Alide_2310" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2371412..2372236) /locus_tag="Alide_2310" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2372407..2373447) /locus_tag="Alide_2311" /db_xref="GeneID:10104367" CDS complement(2372407..2373447) /locus_tag="Alide_2311" /inference="protein motif:PFAM:PF00532" /note="KEGG: bxe:Bxe_C0307 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI" /codon_start=1 /transl_table=11 /product="periplasmic binding protein/laci transcriptional regulator" /protein_id="YP_004126933.1" /db_xref="GI:319762996" /db_xref="GO:0003700" /db_xref="InterPro:IPR000843" /db_xref="InterPro:IPR001761" /db_xref="GeneID:10104367" /translation="MKLNVTAQDVARLARVSQSAVSRTFTPGASVSEETRNKVMLAAQ TLGYRPNALARSLITRRSRIIALVMSYLENQFYPLVIEKLSQKLQKQGYHVLMFISDL DEADAVLTEILQYQVDGIVMASTTLSTALAKTCADAGVPVVLFNRVPDTSALARHSTS SVTSNNYLGGRMVAELLLERGYRRLAFLAGLENSSTNQERERGFNDVLEEAGLAPYRR EVGHYSFSGAQEATRKLFCSGPYPDAVFVANDHMAIAAMDVLRLELGLRVPEDVGVVG FDDVPQAAWGSYRLTTVVQSVEDMVSATVDLLHEQMQGEVNSRNVIVPCRIVERDSVR LHPSPDTAKSHQ" misc_feature complement(2372437..2373435) /locus_tag="Alide_2311" /note="Transcriptional regulators [Transcription]; Region: PurR; COG1609" /db_xref="CDD:31797" misc_feature complement(2373271..2373426) /locus_tag="Alide_2311" /note="Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392" /db_xref="CDD:143331" misc_feature complement(order(2373274..2373279,2373283..2373288, 2373295..2373297,2373304..2373306,2373343..2373345, 2373352..2373357,2373370..2373372,2373379..2373384, 2373388..2373402,2373424..2373426)) /locus_tag="Alide_2311" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature complement(2373277..2373306) /locus_tag="Alide_2311" /note="domain linker motif; other site" /db_xref="CDD:143331" misc_feature complement(2372452..2373258) /locus_tag="Alide_2311" /note="Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_LacI_like_2; cd06278" /db_xref="CDD:107273" misc_feature complement(order(2372662..2372667,2372674..2372676, 2372686..2372688,2372770..2372772,2373100..2373108, 2373115..2373117,2373124..2373126,2373157..2373171, 2373190..2373195,2373199..2373204,2373211..2373219, 2373256..2373258)) /locus_tag="Alide_2311" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:107273" misc_feature complement(order(2372563..2372565,2372614..2372616, 2372779..2372781,2372848..2372850,2372956..2372958, 2373010..2373012,2373079..2373081,2373208..2373210, 2373217..2373222)) /locus_tag="Alide_2311" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107273" gene complement(2373444..2374205) /locus_tag="Alide_2312" /db_xref="GeneID:10104368" CDS complement(2373444..2374205) /locus_tag="Alide_2312" /inference="protein motif:PFAM:PF00106" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bph:Bphy_7421 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase sdr" /protein_id="YP_004126934.1" /db_xref="GI:319762997" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="GeneID:10104368" /translation="MLPRTPSFRLDGKRALVTGAGRGIGLAAAAALAQAGAAVTLAAR SENELRDACGRLRGEGGQCDYMVLDVTDSRAVDEQLAGQGAFHVLVNNAGMNRPKPLA QLQDEDIDAVLDLNVKAAFYVTRAVTRRMAAEGIRGSVINVSSQMGHVGSPRRTLYCA SKHAVEGMSKALAWELGAAGIRVNTVCPTFIETDMTAAMFQEPGFRQWVTERIALGRL GRMEELMGAFVFLASDASSLMTGSALLLDGGWTAA" sig_peptide complement(2374104..2374205) /locus_tag="Alide_2312" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.952) with cleavage site probability 0.649 at residue 34" misc_feature complement(2373450..2374184) /locus_tag="Alide_2312" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(2373456..2374181) /locus_tag="Alide_2312" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(order(2373633..2373644,2373720..2373722, 2373732..2373734,2373771..2373779,2373924..2373932, 2374071..2374079,2374134..2374136,2374140..2374145, 2374149..2374151)) /locus_tag="Alide_2312" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(2373720..2373722,2373732..2373734, 2373771..2373773,2373858..2373860)) /locus_tag="Alide_2312" /note="active site" /db_xref="CDD:187535" gene complement(2374208..2375527) /locus_tag="Alide_2313" /db_xref="GeneID:10104369" CDS complement(2374208..2375527) /locus_tag="Alide_2313" /EC_number="1.1.1.23" /inference="protein motif:TFAM:TIGR00069" /note="TIGRFAM: histidinol dehydrogenase; KEGG: bxe:Bxe_C0309 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase" /codon_start=1 /transl_table=11 /product="histidinol dehydrogenase" /protein_id="YP_004126935.1" /db_xref="GI:319762998" /db_xref="GO:0004399" /db_xref="GO:0008270" /db_xref="GO:0051287" /db_xref="InterPro:IPR001692" /db_xref="InterPro:IPR012131" /db_xref="GeneID:10104369" /translation="MIRYLKRGKAMQVRAEEDAKVRATVECIIKDIELRGDEAVREYS RKFDQWDPADFRLSQAEIDAARKSLSAREIEDIAFAQKQVRNFAQIQRDSMKDVEVQT HPGVILGHKHLPVNAVGCYIPGGKYPLLASAHMSVLTAKVAGVKRVVSTAPPFQGKPH PAIVTAMHMAGADEILVLGGVQAVVAMAVGTQSIAPVDMLVGPGNMFVAEAKRQLFGR VGIDLFAGPTETLVIADESVDAEMCAVDLLGQAEHGPTSPAVLLTTSEKLAKETMAEV ERQLRILPTAAIAAQSWAEYGEVIVCDSDEEMLEKADELASEHVQVMTRDPDYFLNGL SNYGALFLGPRTNVSFGDKVIGTNHTLPTNKAARYTGGLWVGKFLKTCTYQKVLTDEA SALMGEYCSRLCHMENFAGHGEQANLRVRRYGTRADVPWYRPVPAEA" misc_feature complement(2374256..2375521) /locus_tag="Alide_2313" /note="Histidinol dehydrogenase [Amino acid transport and metabolism]; Region: HisD; COG0141" /db_xref="CDD:30490" misc_feature complement(2374292..2375467) /locus_tag="Alide_2313" /note="E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-...; Region: Histidinol_dh; cd06572" /db_xref="CDD:119329" misc_feature complement(order(2374769..2374771,2374904..2374909, 2374913..2374921,2374982..2374984,2374988..2374993, 2375069..2375071,2375132..2375134,2375156..2375161, 2375165..2375167,2375387..2375389)) /locus_tag="Alide_2313" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature complement(order(2374292..2374312,2374316..2374321, 2374364..2374366,2374370..2374390,2374397..2374402, 2374406..2374420,2374424..2374429,2374457..2374459, 2374463..2374465,2374469..2374483,2374487..2374492, 2374496..2374498,2374502..2374528,2374532..2374537, 2374544..2374546,2374559..2374561,2374769..2374774, 2374778..2374786,2374790..2374795,2374802..2374807, 2374877..2374879,2374889..2374891,2374934..2374936, 2375135..2375149,2375183..2375185,2375189..2375191, 2375198..2375212,2375222..2375224,2375228..2375230, 2375255..2375260,2375267..2375272,2375279..2375284, 2375291..2375293,2375297..2375302,2375309..2375314)) /locus_tag="Alide_2313" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119329" misc_feature complement(order(2374292..2374294,2374301..2374303, 2374307..2374309,2374451..2374453,2374469..2374474, 2374484..2374486,2374571..2374576,2374769..2374771, 2374844..2374846,2375135..2375137,2375141..2375143)) /locus_tag="Alide_2313" /note="product binding site; other site" /db_xref="CDD:119329" misc_feature complement(order(2374292..2374294,2374301..2374303, 2374307..2374309,2374451..2374453,2374469..2374474, 2374484..2374486,2374571..2374576,2374769..2374771, 2374778..2374780,2374844..2374846,2375135..2375137)) /locus_tag="Alide_2313" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature complement(order(2374292..2374294,2374472..2374474, 2374769..2374771,2374778..2374780)) /locus_tag="Alide_2313" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:119329" misc_feature complement(2374571..2374576) /locus_tag="Alide_2313" /note="catalytic residues [active]" /db_xref="CDD:119329" gene 2375754..2376359 /locus_tag="Alide_2314" /db_xref="GeneID:10104370" CDS 2375754..2376359 /locus_tag="Alide_2314" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2324 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_004126936.1" /db_xref="GI:319762999" /db_xref="GO:0008168" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10104370" /translation="MQSASELWFDEAYYQRYYFDKKTSVVDPAHAERLGAFVCSYLHY LRVPVTRVLDMGCGIGLWRDMVARHLPGARYHGVEYSAYLCERFGWERGSVVDYQAGE PFDFVICQGVLPYLGTQDLRRALDNLGRLCRGALYLEAVAREDYERDIIDEDLTDPRL YRHRATLYRRGLEPHFIDMGGGLWLSRQAQVPLFALESPGQ" misc_feature 2375910..2376152 /locus_tag="Alide_2314" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 2376370..2377038 /locus_tag="Alide_2315" /db_xref="GeneID:10104371" CDS 2376370..2377038 /locus_tag="Alide_2315" /inference="protein motif:PFAM:PF03942" /note="PFAM: DTW domain containing protein; KEGG: dia:Dtpsy_1758 DTW domain containing protein" /codon_start=1 /transl_table=11 /product="dtw domain containing protein" /protein_id="YP_004126937.1" /db_xref="GI:319763000" /db_xref="InterPro:IPR005636" /db_xref="GeneID:10104371" /translation="MAAPPFRRSTCARCMRPGAACLCAAVRPVSHRVQVLILMHPLEL HQAKGTARLLHLCLQHSRVVVGETFDPDALAQALTAPWSDADRLAPRRAVLLYPPSPP DPQHPMQAPPPHWLDAPDLLRLVLLDGTWRKSRRMLWGNPLLQALPRLALHAPPASRY AIRKAHAPHQRSTLEAAQQALLQLEPSNPDIAALGAAMEAFIAQQRVHWPAARSAMLD PPDP" misc_feature 2376388..2376984 /locus_tag="Alide_2315" /note="DTW domain; Region: DTW; cl01221" /db_xref="CDD:154271" gene 2377055..2377636 /locus_tag="Alide_2316" /db_xref="GeneID:10104372" CDS 2377055..2377636 /locus_tag="Alide_2316" /inference="protein motif:TFAM:TIGR01926" /note="KEGG: dia:Dtpsy_1757 uncharacterized peroxidase-related enzyme; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase" /codon_start=1 /transl_table=11 /product="uncharacterized peroxidase-related enzyme" /protein_id="YP_004126938.1" /db_xref="GI:319763001" /db_xref="InterPro:IPR003779" /db_xref="InterPro:IPR004675" /db_xref="InterPro:IPR010195" /db_xref="GeneID:10104372" /translation="MAQRYPFPDLNALPEDIRARILEVQDKAGFIPNVFLAFARRPAE WRAFFAYHDALMLKEDGSLTKGEREMIVTATSAANQCLYCVVAHGAILRIYEKNPLMA DQVAVNHRKAAISPRQRAMLDFAMKVSQRAHEIEEADFEALYPHGFDDEDIWDIAAIT AFFGLSNRMANFAGMQPNPEFYLMGRMPREKKA" misc_feature 2377064..2377594 /locus_tag="Alide_2316" /note="uncharacterized peroxidase-related enzyme; Region: peroxid_rel; TIGR01926" /db_xref="CDD:130981" misc_feature <2377232..2377561 /locus_tag="Alide_2316" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene complement(2377701..2379437) /locus_tag="Alide_2317" /db_xref="GeneID:10104373" CDS complement(2377701..2379437) /locus_tag="Alide_2317" /inference="protein motif:PFAM:PF00884" /note="PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase" /codon_start=1 /transl_table=11 /product="sulfatase" /protein_id="YP_004126939.1" /db_xref="GI:319763002" /db_xref="GO:0008484" /db_xref="InterPro:IPR000917" /db_xref="InterPro:IPR012549" /db_xref="GeneID:10104373" /translation="MLQTPSSACTSPLSPGPLRRILRQVDGWFSTPLSAQQVVLRLSV YLVLAANWPLWLQLARIGGAPSLYMRSVAALAVLIACGMVAIFAFLAWTRGMKLLWWL VVLVAALSQYYMLTYSVVMDPGMAANVLQTDAHEVADLLSLRMLLAVLAVLLLPTWWL LRVRIPAMRPLRQVWRNLAMLALALGVAAGTVAATSRDLAPLMRNHSQLRYLMNPLAS LYSTTVSAMQPVFARSRTLVPMTQGAALGDSYAAAARPLLFVLVVGETARADHFGING YGRDTTPELARRGVMSWRNVRSCGTSTLASLPCMFSPLGKSGFESRDAEYENLLDVVQ AAGLAVLWLDNQSGCKGVCDRVPHAAASEGLDERARAGLCDGGECRDEAMLHGLDARL AAMPAAQRERGVLLVLHQMGSHGPAYYKRSAGAAKRFMPECRTEVLADCAHGELVNAY DNSIVATDIFLGKTIDWLREKGARYDTGMLYLSDHGESLGEYGLFLHGMPYGMAPDVQ KHVPMVAWLDDALLRRERLSAACLRAGADARLTHDNLYHTMLGLLDVRSPSYRHPLDA FDGCRGTALAFK" misc_feature complement(2377716..2379221) /locus_tag="Alide_2317" /note="putative metal dependent hydrolase; Provisional; Region: PRK11598" /db_xref="CDD:183224" misc_feature complement(2378739..2379206) /locus_tag="Alide_2317" /note="Domain of unknown function (DUF1705); Region: DUF1705; pfam08019" /db_xref="CDD:149223" misc_feature complement(2377764..2378663) /locus_tag="Alide_2317" /note="Sulfatase; Region: Sulfatase; cl10460" /db_xref="CDD:195965" gene complement(2379442..2380170) /locus_tag="Alide_2318" /db_xref="GeneID:10104374" CDS complement(2379442..2380170) /locus_tag="Alide_2318" /inference="similar to AA sequence:KEGG:Dtpsy_1755" /note="KEGG: dia:Dtpsy_1755 PAP2 (acid phosphatase) superfamily protein-like protein" /codon_start=1 /transl_table=11 /product="pap2 (acid phosphatase) superfamily protein-like protein" /protein_id="YP_004126940.1" /db_xref="GI:319763003" /db_xref="GeneID:10104374" /translation="MLVWTRHRLWVLTLFLFSLLVLWDAMGFDLPLARLFGSAQGFAW RNQHTVVLLMHELPRYASGMLLALLVLGVFRPWGFLRRMVVAQRWQLVLSIAAGLLAV SALKRLSATSCPWSLAEFGGVAQYVSHWAWGMHDQGPGHCFPAGHASSAFAYVAGWFV LRRAAPGVAGAWLATALLIGTVLGVVQQVRGAHYMSHTLWTAWVCWAVGLAADMLAHA RHYSLAADTKLSEAFRFSQNRRPR" misc_feature complement(2379526..2380092) /locus_tag="Alide_2318" /note="PAP2_like_6 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase; Region: PAP2_like_6; cd03396" /db_xref="CDD:48100" misc_feature complement(order(2379580..2379582,2379592..2379594, 2379610..2379612,2379730..2379738,2379832..2379834, 2379853..2379855)) /locus_tag="Alide_2318" /note="active site" /db_xref="CDD:48100" gene 2380304..2380978 /locus_tag="Alide_2319" /db_xref="GeneID:10104375" CDS 2380304..2380978 /locus_tag="Alide_2319" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_1754 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004126941.1" /db_xref="GI:319763004" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10104375" /translation="MRVLLVEDDAALSEAVCGYLRAKAFVVDAVPSLAQASAALHAAQ YAAVLLDLHLPDGDGLGLLPQVRSLKQRPIVIVLTARDQVSDRIHGLDAGADDYLVKP YDPGELLARLRAVERRRNAAHVPVLALGDLQIDLSREQVRRAGVPIALTQKEWALLRV MATHPERLHTRESLQDALYGFDDETDSNTLEVFVSRLRRKLGREHIETLRGLGYRLVR SSAPSA" misc_feature 2380304..2380969 /locus_tag="Alide_2319" /note="DNA-binding transcriptional regulator BasR; Provisional; Region: PRK10643" /db_xref="CDD:182612" misc_feature 2380313..2380624 /locus_tag="Alide_2319" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2380322..2380327,2380454..2380456,2380478..2380480, 2380538..2380540,2380595..2380597,2380604..2380609) /locus_tag="Alide_2319" /note="active site" /db_xref="CDD:29071" misc_feature 2380454..2380456 /locus_tag="Alide_2319" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2380463..2380468,2380472..2380480) /locus_tag="Alide_2319" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2380604..2380612 /locus_tag="Alide_2319" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 2380682..2380951 /locus_tag="Alide_2319" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(2380754..2380756,2380811..2380816,2380868..2380870, 2380877..2380879,2380901..2380906,2380925..2380927, 2380940..2380942) /locus_tag="Alide_2319" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 2380982..2382349 /locus_tag="Alide_2320" /db_xref="GeneID:10104376" CDS 2380982..2382349 /locus_tag="Alide_2320" /inference="protein motif:PFAM:PF02518" /note="KEGG: dia:Dtpsy_1753 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="ATP-binding region atpase domain protein" /protein_id="YP_004126942.1" /db_xref="GI:319763005" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR005467" /db_xref="GeneID:10104376" /translation="MSAPAPPLPSERAQSLAVRLTRALILWVGGVWLLCALGVTWYTD REINFNFDDELVEVSHRMFDIALEHLDAEGPRGDADGPLILPAPGSFADADLLYQLVE PDTHRVLARSAEASAEQFDVPLAPGFESTHAWRVYTLRHPTRPIYMQVADPLRERREA VNRTLFGLIIAMVAMLPLLALLLQRIARRELRVLDTLKHEISLRNELLLTPIDLPGLP RELRSVEDHVNRLLERLALALDVERALAANAAHELRTPLTAARLRLQTALEHGLSPAD VQAAVTALQTLSQRTEKLLQLSRAESSAPFTRHPVDLEQLATTVAQEFWQEEHAVDRL DLVQAYEGPAPVALGDFDALAIALRNLVENALAYAGDSPVELIVGPGCALAVRDHGPG VSGDRLQALKRRHVRHSAERTGYGLGLSIVATIAEKHDARFTLCSPLAGERGGFEARL EFTPA" misc_feature <2381561..2382337 /locus_tag="Alide_2320" /note="sensor protein BasS/PmrB; Provisional; Region: PRK10755" /db_xref="CDD:182702" misc_feature 2382041..2382304 /locus_tag="Alide_2320" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(2382059..2382061,2382071..2382073,2382080..2382082, 2382137..2382139,2382143..2382145,2382149..2382151, 2382155..2382160,2382227..2382238,2382284..2382286, 2382290..2382292) /locus_tag="Alide_2320" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 2382071..2382073 /locus_tag="Alide_2320" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(2382149..2382151,2382155..2382157,2382227..2382229, 2382233..2382235) /locus_tag="Alide_2320" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2382365..2383135) /locus_tag="Alide_2321" /db_xref="GeneID:10104377" CDS complement(2382365..2383135) /locus_tag="Alide_2321" /inference="protein motif:PFAM:PF00378" /note="PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4306 enoyl-CoA hydratase/isomerase family protein" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004126943.1" /db_xref="GI:319763006" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="InterPro:IPR018376" /db_xref="GeneID:10104377" /translation="MSGGGVTTEVRGHVGWVTIDRPDRMNALAKATFAALVDASLELD ANPEVRVVVYTGAGERAFSAGVDLKELDASGPMIHPMGGAGRNPNEVILELGKPTIAA INGVAAGGGCELALACDIRVASSTARLGLPEARVGMGANFGSVVLPQLIPRGLALELL YTGDLIDMAAASRLGLVNHVVEPSELLRFTEHLAARIAGNAPLSVQRMKAVALKSAGL PTAAALRLNTGPNPYTSEDRIEGNRAFVEKRKPQFRGR" misc_feature complement(2382368..2383120) /locus_tag="Alide_2321" /note="enoyl-CoA hydratase; Provisional; Region: PRK06494" /db_xref="CDD:180591" misc_feature complement(2382545..2383120) /locus_tag="Alide_2321" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(2382728..2382730,2382737..2382742, 2382806..2382814,2382818..2382820,2382932..2382946, 2382956..2382958,2383055..2383057,2383061..2383063)) /locus_tag="Alide_2321" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(2382806..2382808,2382938..2382940)) /locus_tag="Alide_2321" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(2382545..2382550,2382557..2382559, 2382602..2382604,2382611..2382613,2382644..2382646, 2382653..2382658,2382662..2382667,2382671..2382676, 2382689..2382694,2382698..2382706,2382707..2382709, 2382725..2382736,2382770..2382781,2382842..2382844, 2382866..2382868)) /locus_tag="Alide_2321" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(2383140..2384102) /locus_tag="Alide_2322" /db_xref="GeneID:10104378" CDS complement(2383140..2384102) /locus_tag="Alide_2322" /inference="similar to AA sequence:KEGG:BB4305" /note="KEGG: bbr:BB4305 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126944.1" /db_xref="GI:319763007" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10104378" /translation="MLTRRIALAASLAALAVPSFAQDKYPSRPITLISPYQAGGTTET FARLLSEEFSSILGQPLVIEQKPGASGTIGAKFVAGAKPDGYTLLANTSQHVMYDGMY QKLPFDSMKDFKPVGILGSAPILVVVAENSPYRSFKEVLEAAKTKNLTFASGAQGSLP HLTGERVAMQAKVKMTHIAFSGTAPALTNVLGGHVDLLYSTAASVMAQIKGGRLRALA VSTKDRMPELPDVPTIAESGMPGFDVTAWYGVWAPKGTSPSVVKILNDALRAASDKPA VRKRMADNSVTPSHLTAEQFAAFAEQERQVWLGVMKNAGLQPEN" sig_peptide complement(2384037..2384102) /locus_tag="Alide_2322" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" misc_feature complement(2383152..2384051) /locus_tag="Alide_2322" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2383239..2383967) /locus_tag="Alide_2322" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2384144..2385151) /locus_tag="Alide_2323" /db_xref="GeneID:10104379" CDS complement(2384144..2385151) /locus_tag="Alide_2323" /inference="protein motif:PFAM:PF00107" /note="PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbr:BB4304 zinc-binding dehydrogenase" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase zinc-binding domain protein" /protein_id="YP_004126945.1" /db_xref="GI:319763008" /db_xref="GO:0008270" /db_xref="GO:0016491" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="GeneID:10104379" /translation="MKAVVCREYGGLDIARLEDVAPPPMRPGCVRVRVEAASASFASL LVMAGKHQNKAPLPLIPGTEVAGVVTEVAGDVSRFRPGDRVIAGVQSGGYAQEVVAPQ QTVFDLPDSVGFEDGAQFPTIYGTAYGALKWRAQLAPSEFVLVHGAGGGSGLAAVEVA KALGGRVIATAGSDEKLEIARSRGAEHAINYREQDWREAVLEITRKRGADVVYDPVGG LTFDTSLRCIAPEGRIIPMGFAGGTIPTVPANIVLVKNITVLGIYWGYYFGWGRQPVL PSNDARMRAAYAELFEWVIQGKLKPFVHAVLPLSDFRTALEMIASRAVVGRVILRPQA G" misc_feature complement(2384159..2385151) /locus_tag="Alide_2323" /note="Quinone oxidoreductase (QOR); Region: QOR1; cd08241" /db_xref="CDD:176203" misc_feature complement(2384159..2385151) /locus_tag="Alide_2323" /note="putative NAD(P)H quinone oxidoreductase, PIG3 family; Region: quinone_pig3; TIGR02824" /db_xref="CDD:163034" misc_feature complement(order(2384174..2384176,2384180..2384182, 2384186..2384188,2384360..2384368,2384429..2384434, 2384438..2384443,2384507..2384509,2384579..2384581, 2384624..2384626,2384636..2384641,2384696..2384704, 2384711..2384713,2384774..2384776,2384786..2384788, 2385029..2385034)) /locus_tag="Alide_2323" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176203" gene complement(2385151..2386368) /locus_tag="Alide_2324" /db_xref="GeneID:10104380" CDS complement(2385151..2386368) /locus_tag="Alide_2324" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4303 racemase" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004126946.1" /db_xref="GI:319763009" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10104380" /translation="MEVCLSNPSNGGPLSGVRVLDITAALSGPVATQILGDMGADVIK VEPPEGDSIRGMGPARHHGMGAMFLHTNRSKRSVVLDLKLESAREAFRRLARTADVLI CNTRPKAMARLGLDYARLAPANPGLVYVNIVGYGSGGMAADKPAYDDLIQAAAGIPSL CPSGGPARYAPIAVADRVTGICAANAALGALFHRARTGEGQHVEVPMMETIAALVLAD HMAGLTFEPPIGPPVYQRYVSIRRPLPTLDGHLSMMVLTDRQWRTFFDAVGHPEVMDD PRFQAMAQRTQNLEALYARVESILKTRTTAEWVECLEAADIPVASIETMESLITNGHL AGSGFYQQIDHPSEGLIRAIAKTSNWSRTQPRPTRPTPRLGEHSAEVLAEAGYSAPEI AQMFASGASKGED" misc_feature complement(2385169..2386350) /locus_tag="Alide_2324" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 2386506..2387675 /locus_tag="Alide_2325" /db_xref="GeneID:10104381" CDS 2386506..2387675 /locus_tag="Alide_2325" /inference="protein motif:PFAM:PF02771" /note="PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB1199 acyl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004126947.1" /db_xref="GI:319763010" /db_xref="GO:0003995" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10104381" /translation="MDALWEMPLDAEARRWQELAARLTESNFAPLADAIDREQRYPVE HLRPLLESGISGMFLPKAYGGGGASLVALATVVETIAAGCGSTAAIMAALSLGAFPVL LGGNEEQKQALLGGLARRGEAVNFALSERGAGSDAAAITATAVREGDGWRIRGEKCWL GNGGHSEHFIVFALTGEPGARNNISAFWVPRSTPGAAVDFYEDKMGIRGTTTTNFKVD VWVPRSSMVGSEGHGLKLALSTLNIGRIVVAAQALGIALCSYRAAAEFATQRQTFGQA IIDHQGVGFMLADAATSLSAARMMVYEAAKAYDEGRDVSTLGAMAKLFASEAAHKVCD DAMQILGGRGYVKPSAVERCYRDQRITEIYEGTSEIQRLVIARAVKRSAARPLNH" misc_feature 2386524..2387657 /locus_tag="Alide_2325" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 2386539..2387648 /locus_tag="Alide_2325" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(2386791..2386793,2386881..2386883,2386887..2386889, 2386980..2386982,2386986..2386988,2387592..2387600, 2387604..2387606,2387610..2387612) /locus_tag="Alide_2325" /note="active site" /db_xref="CDD:173838" gene 2387692..2388747 /locus_tag="Alide_2326" /db_xref="GeneID:10104382" CDS 2387692..2388747 /locus_tag="Alide_2326" /inference="similar to AA sequence:KEGG:BB1197" /note="KEGG: bbr:BB1197 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126948.1" /db_xref="GI:319763011" /db_xref="GeneID:10104382" /translation="MNTDIKNEPVGAWKAVAEWYHAYFTGIVLYTVSRMGPAKAEELV YEIFCRQRRERFLCGLKKLGIDTLPPAVAAAQYHYLSNHIGGVSVEYMYESERKAWIR YAAPRWIWAGTALCGIPPEVSRAMLLGWHAQNGTMLGNPRLGFVCTKQTVDGQSGLEG YYCEYDRDLQPHERLRFARQEDAPDFDAAKAPKLPIDTWPAARLAKAHRNYAMEYVRS AFPTALQLWGPDEAAHRLRMAGRMVGMQFYHETARGLRGNYAPDARGFAGFLADLGAA HGDRTSVVEAGGAFEVRQEGWAFREGLDEWSPLLSQAWNGLLEGALQAHNRRLGMQFV DGSGSGRLELSWTIRDN" gene 2388765..2389901 /locus_tag="Alide_2327" /db_xref="GeneID:10104383" CDS 2388765..2389901 /locus_tag="Alide_2327" /inference="protein motif:PFAM:PF02515" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: cti:RALTA_B0352 acyl-CoA transferases/carnitine dehydratase" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase/bile acid-inducible protein f" /protein_id="YP_004126949.1" /db_xref="GI:319763012" /db_xref="GO:0003824" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10104383" /translation="MSTELRPGALEGIKVVDASRVLAGPFAGQILGDHGADVIKIESP EGDECRGFGPPFVNGSSAYFNAVNRNKQSVVLDLGKEQERQRLMDLLATADVLIENFK LSTLQSWGIPDARWFTQTFPRLVHCRITGYGDEGPYGGLPGYDAAVQAMAGLLSINGD ADGEPVRLGVPVVDLTTGMNAAMAALLALQARTRTGRGQLADVSLYDSAVSVAHPFLT NFLHSGKVPRPTGNRHANIVPYNVYNTATVPLFIAVANDRLFGKLCGHLGAPDLPRDP RFATNRARVENRDALEVRLCEVFARLEGEALGERLLADGVPAAPILDIKAVASSEHAK FRQMVVRQDGYVGPGIPIKLSDTPASIRRPPPVLGNLSPDDARA" misc_feature 2388780..2389871 /locus_tag="Alide_2327" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 2390053..2390694 /locus_tag="Alide_2328" /db_xref="GeneID:10104384" CDS 2390053..2390694 /locus_tag="Alide_2328" /inference="protein motif:PFAM:PF00440" /note="PFAM: regulatory protein TetR; KEGG: bbr:BB4302 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein tetr" /protein_id="YP_004126950.1" /db_xref="GI:319763013" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10104384" /translation="MQLALLDAAAKAFTIFGFAAASIDVIASQIGATKGSVYYHYRSK SELFFAVHKRAMVINLRVQMPVLQDKSLSTIEKLFNMCHRHAMAMMDSLYYQRVTVQG VELHQSISTTPLEREALQEVVAMRDAYEELFEHVLEQGMSEGVFAALDPSIASKSILG SLNWTTVWYRPREGESAAAKLRIADQLALQAVCGIVAAKSRSRVPTAAARLPA" misc_feature 2390062..2390613 /locus_tag="Alide_2328" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 2390065..2390205 /locus_tag="Alide_2328" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 2390844..2392559 /locus_tag="Alide_2329" /db_xref="GeneID:10104385" CDS 2390844..2392559 /locus_tag="Alide_2329" /EC_number="1.5.5.1" /inference="protein motif:PRIAM:1.5.5.1" /note="KEGG: dia:Dtpsy_1751 electron-transferring-flavoprotein dehydrogenase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="electron-transferring-flavoprotein dehydrogenase" /protein_id="YP_004126951.1" /db_xref="GI:319763014" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR007859" /db_xref="GeneID:10104385" /translation="MTNEEILSAYGPREAMEYDVVIVGGGPAGLSTAIRLKQLAAERG TDVSVVVLEKGSEPGAHILSGAIMDPRALTELIPDWKERGAPLNQPVTDDAYIFLSET SALRVPNAFLPPFAHNHGNYIVRLGDVTKWLAEQAESLGVEIFPGFPAAEVLYTDGSE NGGVPAVRGVATGNMGLGKDGEPTENFQLGMELLGKYTIFAEGARGHLGKQLIARYKL DDNRDPQSFGIGVKELWEIDPKKHQPGFVMHTAGWPMDSKTYGGAFLYHLEDNKVALG FVTGLGYTNPYLSPFEEFQRWKTHPNVRWYFENDKGEITAKRLSYGARAINASGINSL PKTIFPGGALVGCDAGYLNVSRIKGSHSAIKTGMLAAEAAYEAIQAGRQHDELTAYPK AFEASWLYTELNKDRNFKNWFKYGLATATLMNGFEQFVLRGHIPWTLHREKPDHAYLK PAAECKPIVYPKPDGKLTFDRLSSVFISNTNHEENQPAHLTLKDASVPVAVNLATYAG PEARYCPAGVYEFVPDEAHAGQQRLQINAQNCVHCKTCDIKDPTQNIVWVTPEGGGGP NYSGM" misc_feature 2390889..2392289 /locus_tag="Alide_2329" /note="Dehydrogenases (flavoproteins) [Energy production and conversion]; Region: FixC; COG0644" /db_xref="CDD:30989" misc_feature 2390892..>2391941 /locus_tag="Alide_2329" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 2392089..2392418 /locus_tag="Alide_2329" /note="Electron transfer flavoprotein-ubiquinone oxidoreductase; Region: ETF_QO; pfam05187" /db_xref="CDD:147396" misc_feature <2392308..2392547 /locus_tag="Alide_2329" /note="Ferredoxin-like protein [Energy production and conversion]; Region: FixX; COG2440" /db_xref="CDD:32561" gene 2392798..2393766 /locus_tag="Alide_2330" /db_xref="GeneID:10104386" CDS 2392798..2393766 /locus_tag="Alide_2330" /inference="protein motif:PFAM:PF04392" /note="PFAM: protein of unknown function DUF534; KEGG: ajs:Ajs_1949 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126952.1" /db_xref="GI:319763015" /db_xref="InterPro:IPR007487" /db_xref="GeneID:10104386" /translation="MKSLSWAPLGAFALAMAALAPVAHAQQKSVAVTAIVEHPALDSV RDGVQAALKEAGYESGKNLKWQYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQA VVAATKTVPVVFSAVTDPVAAKLVPNWEPSKTNVTGVSDLLALDKQMDLVKQVVPNAK RVGMVYNPGEANSVVVVKELEKLLPKLGMTLVEAAAPRSVDVSSAARSLIGKVDVIYT NTDNNVVSAYESLVKVGQDAKIPLVASDTDSVKRGAIAALGINYRDLGEQTGRMVVRI LKGEKPGDIRPELSTKMELFVNPGAAEKQGVKLSDALIKSAAQVVQ" sig_peptide 2392798..2392875 /locus_tag="Alide_2330" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 26" misc_feature 2392873..2393760 /locus_tag="Alide_2330" /note="ABC-type uncharacterized transport system, periplasmic component [General function prediction only]; Region: COG2984" /db_xref="CDD:32803" misc_feature 2392885..2393724 /locus_tag="Alide_2330" /note="Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_uncharacterized_transporter; cd06325" /db_xref="CDD:107320" misc_feature order(2392987..2392989,2392993..2392995,2393425..2393427, 2393515..2393517) /locus_tag="Alide_2330" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:107320" misc_feature order(2393083..2393091,2393143..2393151,2393311..2393313, 2393458..2393460,2393533..2393535) /locus_tag="Alide_2330" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107320" gene 2393848..2394735 /locus_tag="Alide_2331" /db_xref="GeneID:10104387" CDS 2393848..2394735 /locus_tag="Alide_2331" /inference="protein motif:PFAM:PF02653" /note="PFAM: inner-membrane translocator; KEGG: dac:Daci_4312 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_004126953.1" /db_xref="GI:319763016" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10104387" /translation="MSLFSLLGAVEIGLIFSLVALGVYISFRLLRFPDLTVDGSFPLG GAVCAILISTGTNPWLATLAATAAGAVAGLLTGWLNVRLKIMDLLASILMMIALYSVN LRIMGGPNVPLINDTTLFTLLQPESIPDYVARPMVLFVIVVLAKVALDWFFATERGLA IRATGSNARMARAQGINTGAMVLLGMAISNALVGLAGALFAQTQGGSDISMGIGTIVI GLAAVIVGESILPSRRIVYATLAVVVGAIVYRFFIAAALNSDFIGLKAQDLNLVTAVL VTVALVIPQLKRKLGSRKA" misc_feature 2393884..2394633 /locus_tag="Alide_2331" /note="Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of...; Region: TM_PBP1_branched-chain-AA_like; cd06574" /db_xref="CDD:119320" misc_feature 2394352..2394408 /locus_tag="Alide_2331" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119320" gene 2394748..2395542 /locus_tag="Alide_2332" /db_xref="GeneID:10104388" CDS 2394748..2395542 /locus_tag="Alide_2332" /inference="protein motif:PFAM:PF00005" /note="KEGG: dia:Dtpsy_1748 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="abc transporter related protein" /protein_id="YP_004126954.1" /db_xref="GI:319763017" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10104388" /translation="MLSAQDLFITFNPGTPIETRALRGMSLEIPAGQFVTVIGSNGAG KSTFLNAISGDIGVDTGRIAIDGLDVTRSPVWERAERVSRVFQDPMAGTCEDLTIEEN MALAQQRGTRRGLRGAVKQAERAMYRERLSTLGLGLENRLTDRIGLLSGGQRQAVSLL MAALQPSRILLLDEHTAALDPRTADFVLQLTARIVQENKLTTMMVTHSMRQALDVGER TVMLHQGQVVLDVSGEERARLDVPDLLKMFEKVRGEKLADDALLLG" misc_feature 2394748..2395536 /locus_tag="Alide_2332" /note="ABC-type uncharacterized transport system, ATPase component [General function prediction only]; Region: PhnK; COG1101" /db_xref="CDD:31298" misc_feature 2394805..2395452 /locus_tag="Alide_2332" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 2394862..2394885 /locus_tag="Alide_2332" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(2394871..2394876,2394880..2394888,2395006..2395008, 2395264..2395269,2395366..2395368) /locus_tag="Alide_2332" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 2394997..2395008 /locus_tag="Alide_2332" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 2395192..2395221 /locus_tag="Alide_2332" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 2395252..2395269 /locus_tag="Alide_2332" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 2395276..2395287 /locus_tag="Alide_2332" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 2395354..2395374 /locus_tag="Alide_2332" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(2395717..2397642) /locus_tag="Alide_2333" /db_xref="GeneID:10104389" CDS complement(2395717..2397642) /locus_tag="Alide_2333" /inference="protein motif:PFAM:PF00158" /note="KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="sigma-54 factor interaction domain-containing protein" /protein_id="YP_004126955.1" /db_xref="GI:319763018" /db_xref="GO:0003700" /db_xref="GO:0005524" /db_xref="GO:0008134" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR020441" /db_xref="GeneID:10104389" /translation="MPWNTSKPSDSVPADVALIERSLLRSFELHRLDPGRGEPPRVLT TTALKDHREPMERFMRIARGGMEALFGQVRDAGYVVLLADTHGVAVDFIGNPLFDQDW RRAGLWLGSCWTEEKEGTCAVALANLEQRAITVHHAEHFRAPNKTLTCSAVPIFAPDG RPLAVLDASAMESPDDRRSQHLVLQMVQSAARMAEDANFLHEFEHHHVLKLARRRDFL EVSADGMVVLDETGRIVAISQSLREQGALVAALGRSVEEVFDYRFEQVADAARQGGYP LAMRHLPTGTQCFALVRPPRRRPSAAPAQASSAMAGADALQAIAGHDPQMQTNVRQAL RVLDKGLAILLHGESGSGKEAFAKAMHEASARRARPFVAVNCAAIPETLIESELFGYR EGAFTGARTKGARGKIAQAHGGTLFLDEIGDMPQAMQTRLLRVLAEREVTPLGAEQPV AVDVQLICATHRDLRGMVAQGQFRLDLYYRLNSVTLELPALRDRADKGLLIERLLRED GQQLYGRAVAITEAARQLLLRHDWPGNIRQLKNVLRTAMALSGGEAVGPEHLPAEIRG GQPAMLPPERMLSLGGVDAETAVPGAPGGRDALLQALKAHQWNVTETARSLGLCRATV YRHMQRWEIVSPNRLGH" misc_feature complement(2395741..2397606) /locus_tag="Alide_2333" /note="Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]; Region: AcoR; COG3284" /db_xref="CDD:33094" misc_feature complement(2397058..2397420) /locus_tag="Alide_2333" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature complement(2396191..2396655) /locus_tag="Alide_2333" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2396581..2396604) /locus_tag="Alide_2333" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2396260..2396262,2396386..2396388, 2396578..2396601)) /locus_tag="Alide_2333" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2396383..2396400) /locus_tag="Alide_2333" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2396203..2396205) /locus_tag="Alide_2333" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(2395750..2395857) /locus_tag="Alide_2333" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(2397754..2398629) /locus_tag="Alide_2334" /db_xref="GeneID:10104390" CDS complement(2397754..2398629) /locus_tag="Alide_2334" /inference="protein motif:PFAM:PF00561" /note="PFAM: alpha/beta hydrolase fold; KEGG: vap:Vapar_5337 alpha/beta hydrolase fold protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004126956.1" /db_xref="GI:319763019" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10104390" /translation="MKLSCRDYPGGGDAGAPLVLLHGLFGSAAQWHHIAAPLSARARV LAVDLRNHGLSPHADAMDYSEMAEDLRELLDAQGIARARIAGHSMGGKVAMAFALLHP RRTEALAVLDMAPATYHDHFSALVCAALRLDLAAARSREDAGRQLERFVPSARLRAML LQNLAWRDGHLAWRIHWLGIGGSMPQLLGFAPGVLRSSSAVEALFVRGGTSNYVLPRH ENTIRRLFPRSRIVELAQAGHWLHADQPAALVQLLAEWMEGPATGVPPACLVSSIPGP AQAASGSMFEPRAGA" misc_feature complement(<2398324..2398590) /locus_tag="Alide_2334" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature complement(2397874..2398578) /locus_tag="Alide_2334" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene complement(2398643..2400223) /locus_tag="Alide_2335" /db_xref="GeneID:10104391" CDS complement(2398643..2400223) /locus_tag="Alide_2335" /EC_number="1.1.99.3" /inference="protein motif:PRIAM:1.1.99.3" /note="KEGG: azo:azo3873 glucase dehydrogenase alpha subunit; PFAM: glucose-methanol-choline oxidoreductase; monooxygenase FAD-binding" /codon_start=1 /transl_table=11 /product="gluconate 2-dehydrogenase (acceptor)" /protein_id="YP_004126957.1" /db_xref="GI:319763020" /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR002938" /db_xref="GeneID:10104391" /translation="MADQTQFSLHDDSVVVIVGSGAGGGTLANELAQRGVKCVVLEAG KHYTPDDFENDEWAMFNKISWLDKRISAGGWHHTQTYPNLPAWIVKGVGGSTVHWSGV ALRFQEHDFRTRTTYGAIEGANVLDWPITLAELEPYYDLAEKKMGVAGSKASGLPPMP PNNHYKVIEAGARKVGYRNIVRPAASNSKVYDGRPACQQIGFCMQGCKIGAKWSTLYT EVPRAQATGHVELRPESMVLQIQHDKDGRANGVLYVDGKGRRQLQKARVVCVAGNSIE SPRLLLNSASGLFPNGLANSSGQVGRNYMNHATAAAVSIHKGPVYMYRGFDIAAVVAD EVPLDTRRGFVGGYYLEGLALHLPYTAAFMKPGGWGRDFASALEMYDHMSCVWVCGED LAREQNSITLHPTEKDQYGLPVPIVTKTYHENDDRITAHGLVQWRKLSEAVGATRVID MPAYPASHNMGTNRMSAKAGDGVVNKWGQAHDVKNLFISDGSQFTSSAAANPTLTIVA LAIRQAEHIAGAMQRREL" misc_feature complement(2398664..2400148) /locus_tag="Alide_2335" /note="Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Region: BetA; COG2303" /db_xref="CDD:32458" misc_feature complement(2398688..2399041) /locus_tag="Alide_2335" /note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199" /db_xref="CDD:191229" gene complement(2400256..2400837) /locus_tag="Alide_2336" /db_xref="GeneID:10104392" CDS complement(2400256..2400837) /locus_tag="Alide_2336" /inference="similar to AA sequence:KEGG:azo3872" /note="KEGG: azo:azo3872 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126958.1" /db_xref="GI:319763021" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR017909" /db_xref="GeneID:10104392" /translation="MKNLNDNLAPGTMRMLDRRPTLQRRSFLRGGGLGAIGIAVIPAA GIAAAKDVAAQQSFRHLGAATGKTLLRMARDLYPHDKLAESFYVEAVAPYDAAAAKDK GVKTLLTEGVKDLDQRARQRYGVPYAEVKTEDERVALLKDIEATPFFRKVQGGLVTGL YNNKKLWPLFGYEGSSWQKGGYVNRGFDDIDWL" sig_peptide complement(2400688..2400837) /locus_tag="Alide_2336" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.691) with cleavage site probability 0.627 at residue 50" gene complement(2400894..2401607) /locus_tag="Alide_2337" /db_xref="GeneID:10104393" CDS complement(2400894..2401607) /locus_tag="Alide_2337" /inference="protein motif:PFAM:PF03099" /note="PFAM: biotin/lipoate A/B protein ligase; KEGG: azo:azo3871 lipoate protein ligase" /codon_start=1 /transl_table=11 /product="biotin/lipoate a/b protein ligase" /protein_id="YP_004126959.1" /db_xref="GI:319763022" /db_xref="GO:0003824" /db_xref="InterPro:IPR004143" /db_xref="GeneID:10104393" /translation="MTAALPSLTPPEAVREQLWNEQQLAQPVAVPGFRLWRYEAPAIV LGCSQRRLLAQADGEVPVLLRQSGGGAVLAGPWMLGLSVALPAGHPLARQGLVASYRW LGEAIARVLQQGGVDAQALAPEALRALPAAQRTAVDWACFGGLSPWEVLAQGRKIAGL AQVRRASGVLLVGGVLLQPSPWQLMCDALGRGGADARTLAATTVSAAELAAHFDGQAC AQRLGLALQAALEQEACPM" misc_feature complement(<2401110..2401511) /locus_tag="Alide_2337" /note="Lipoate-protein ligase A [Coenzyme metabolism]; Region: LplA; COG0095" /db_xref="CDD:30444" gene complement(2401604..2402317) /locus_tag="Alide_2338" /db_xref="GeneID:10104394" CDS complement(2401604..2402317) /locus_tag="Alide_2338" /EC_number="2.3.1.12" /inference="protein motif:PRIAM:2.3.1.12" /note="KEGG: azo:azo3870 hypothetical protein; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes" /codon_start=1 /transl_table=11 /product="dihydrolipoyllysine-residue acetyltransferase" /protein_id="YP_004126960.1" /db_xref="GI:319763023" /db_xref="InterPro:IPR001078" /db_xref="GeneID:10104394" /translation="MSAAVAEAGAGSASIALKGLRGAIARNMALGWQAPRVAMGAEAD VSACRAWLRAQSVGEGDAKPTITACVLRATALALAAHPRMNALLKDNVVECQGAVHLG LAVALDEGLMVPVIRDAETKPVAQLAQETRALAAGTRAGQLPPKAYQGATFTVTNLGM TGIDWFTPVLNPPQVGILGVSSVRECAVVRDGQVRVAAMTTLTLVFDHRAIDGYPAAQ FLQAVKAHLEAPDSLSGRP" misc_feature complement(2401619..2402269) /locus_tag="Alide_2338" /note="2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; cl02008" /db_xref="CDD:194225" gene complement(2402314..2402559) /locus_tag="Alide_2339" /db_xref="GeneID:10104395" CDS complement(2402314..2402559) /locus_tag="Alide_2339" /inference="protein motif:PFAM:PF00364" /note="PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rfr:Rfer_3967 biotin/lipoyl attachment" /codon_start=1 /transl_table=11 /product="biotin/lipoyl attachment domain-containing protein" /protein_id="YP_004126961.1" /db_xref="GI:319763024" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR003016" /db_xref="GeneID:10104395" /translation="MSTDIILSQDAWQDVEPGTEALVEDWLVKVGDSVKAGQPVASVV VVKSSHEVLAPADGVIEAILVPAEGTFKPGQSLGTLA" misc_feature complement(2402320..2402514) /locus_tag="Alide_2339" /note="Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849" /db_xref="CDD:133458" misc_feature complement(order(2402401..2402403,2402413..2402430, 2402449..2402451)) /locus_tag="Alide_2339" /note="E3 interaction surface; other site" /db_xref="CDD:133458" misc_feature complement(2402419..2402421) /locus_tag="Alide_2339" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133458" gene complement(2402556..2403593) /locus_tag="Alide_2340" /db_xref="GeneID:10104396" CDS complement(2402556..2403593) /locus_tag="Alide_2340" /inference="protein motif:PFAM:PF02779" /note="PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: rfr:Rfer_3966 transketolase" /codon_start=1 /transl_table=11 /product="transketolase central region protein" /protein_id="YP_004126962.1" /db_xref="GI:319763025" /db_xref="GO:0003824" /db_xref="InterPro:IPR005475" /db_xref="InterPro:IPR005476" /db_xref="InterPro:IPR017871" /db_xref="GeneID:10104396" /translation="MTTRKLTMAQAVSEAIGQEIERNPDVFVMGEDIGKYGGIFGATG GLLARHGKDRIMDTPISETAFIGTAIGAAAEGMRPIAELMFVDFFGVCMDMIYNHMAK NIYMAGGNIKLPMVLMSAIGGGYNDAAQHSQCLYATFAHMPGMKVVVPSNAYDAKGLM TQAIRDDNPVVFLYHKGIMGLPWMSYFEGSTNEVPEEQYAIPFGQAKVVREGGDVTIV TLSQMVQKSLLAAEQLAQAGIQAEVIDLRTIVPLDREAVLKSVRKTGRLLVADEDYLS FGLSGEIAALVAENLDSVRLKAPVRRLAVPDVPIPYSRPLEQFVIPQVDAIAAAARQL VAAPQLEGALA" misc_feature complement(2402640..2403581) /locus_tag="Alide_2340" /note="Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022" /db_xref="CDD:30372" misc_feature complement(2403066..2403566) /locus_tag="Alide_2340" /note="Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036" /db_xref="CDD:132919" misc_feature complement(order(2403090..2403095,2403156..2403161, 2403204..2403206,2403213..2403215,2403279..2403284, 2403309..2403314,2403321..2403323,2403378..2403386, 2403390..2403395,2403402..2403419,2403423..2403425, 2403432..2403434,2403498..2403500,2403516..2403518, 2403522..2403524)) /locus_tag="Alide_2340" /note="alpha subunit interface [polypeptide binding]; other site" /db_xref="CDD:132919" misc_feature complement(order(2403321..2403323,2403330..2403332, 2403408..2403410,2403414..2403416,2403501..2403503)) /locus_tag="Alide_2340" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132919" misc_feature complement(order(2403165..2403167,2403171..2403176, 2403180..2403182,2403204..2403209,2403213..2403215, 2403279..2403281,2403288..2403290,2403300..2403302, 2403315..2403317,2403321..2403326,2403408..2403419, 2403423..2403425,2403498..2403500)) /locus_tag="Alide_2340" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:132919" misc_feature complement(2402643..2402984) /locus_tag="Alide_2340" /note="Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780" /db_xref="CDD:145764" gene complement(2403619..2404626) /locus_tag="Alide_2341" /db_xref="GeneID:10104397" CDS complement(2403619..2404626) /locus_tag="Alide_2341" /EC_number="1.2.4.1" /inference="protein motif:PRIAM:1.2.4.1" /note="KEGG: azo:azo3867 acetoin dehydrogenase, alpha subunit; PFAM: dehydrogenase E1 component" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase (acetyl-transferring)" /protein_id="YP_004126963.1" /db_xref="GI:319763026" /db_xref="InterPro:IPR001017" /db_xref="GeneID:10104397" /translation="MNPSTERKLWMYEKMIEIREYEETMARVYMEGKLPPHIQKGLAF DIGSGPVPGEMHLAAGQEPVAVGVCAHLHDDDTVVGSHRPHHFAIAKGVPLNSMTAEM FGKDTGLGRGKGGHMHLFDPAHKFSCSGIIGASMPPACGAALAAKKRGKDWVAVAFFG EGATNQGAFHESMNLAALWKLPVLFVCEDNKYAISVEKSESTSVAWNADRAAAYGMPG VLVDQNDALAVYEAAGVAVERARRGEGPTLIEVKTDRYLGHFQGDPETYRPKGEAAEL RKNDPIPRLAEHLRRSGLLDDAADQALRQRVSARIAEAYEYGRSSPYPKPEDALLHVF C" misc_feature complement(2403625..2404623) /locus_tag="Alide_2341" /note="pyruvate dehydrogenase E1 component alpha subunit; Reviewed; Region: odpA; CHL00149" /db_xref="CDD:177069" misc_feature complement(2403679..2404596) /locus_tag="Alide_2341" /note="Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000" /db_xref="CDD:48163" misc_feature complement(order(2403829..2403831,2403841..2403843, 2403982..2403984,2403997..2403999,2404039..2404050, 2404093..2404095,2404105..2404107,2404117..2404119, 2404126..2404137,2404141..2404143,2404234..2404239, 2404315..2404317,2404522..2404524)) /locus_tag="Alide_2341" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:48163" misc_feature complement(order(2403850..2403852,2404051..2404053, 2404057..2404059,2404138..2404149,2404231..2404233, 2404237..2404239,2404378..2404383)) /locus_tag="Alide_2341" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48163" misc_feature complement(order(2404093..2404095,2404102..2404107, 2404123..2404128,2404183..2404185,2404192..2404197, 2404201..2404206,2404213..2404218,2404225..2404227, 2404240..2404242,2404246..2404248,2404249..2404251)) /locus_tag="Alide_2341" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:48163" misc_feature complement(order(2403784..2403792,2403814..2403846, 2403847..2403867)) /locus_tag="Alide_2341" /note="phosphorylation loop region [posttranslational modification]" /db_xref="CDD:48163" gene complement(2404962..2405423) /locus_tag="Alide_2342" /db_xref="GeneID:10104398" CDS complement(2404962..2405423) /locus_tag="Alide_2342" /inference="protein motif:PFAM:PF01037" /note="KEGG: dia:Dtpsy_1745 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type" /codon_start=1 /transl_table=11 /product="transcription regulator asnc-type-like protein" /protein_id="YP_004126964.1" /db_xref="GI:319763027" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000485" /db_xref="InterPro:IPR019885" /db_xref="InterPro:IPR019887" /db_xref="InterPro:IPR019888" /db_xref="GeneID:10104398" /translation="MDRLDRKILSVLQANARASLQEIGAAVGLSPSPCWGRIKKMEEA GVIEGYTVRLNPQALDLADTVLVQVTLDSHSDNTLEKFGEVLASIPEVVEAHLVSGDY DYLLRVVVRDTRDYERLLREKLYKIKGIRHSRSSFVLRTLKKADLPLLVDR" misc_feature complement(2404980..2405423) /locus_tag="Alide_2342" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(2405094..2405423) /locus_tag="Alide_2342" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 2405709..2406680 /locus_tag="Alide_2343" /db_xref="GeneID:10104399" CDS 2405709..2406680 /locus_tag="Alide_2343" /inference="protein motif:TFAM:TIGR00787" /note="KEGG: ajs:Ajs_1941 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7" /codon_start=1 /transl_table=11 /product="trap dicarboxylate transporter, dctp subunit" /protein_id="YP_004126965.1" /db_xref="GI:319763028" /db_xref="InterPro:IPR004682" /db_xref="InterPro:IPR018389" /db_xref="GeneID:10104399" /translation="MQLTKLALGLGLALGITATAFAQTTMRISISVAQNSHQGVAIDT FAKEVEKRTGGRYKIQTFYNGALGGERESIEAVQLGTQELAFSSTGPVPNFVPEAKIL DVPFLFRDKAHARAVLDGPIGQELLGKFDAKGFKALAWAENGFRHMTNSKRDVRSPDD LKGLKMRTMENPVHIAAYKAFGIITTPMAFPEVFTALQQGTVDGQENPLPVIISAKFD QVQKHLSLTGHVYSPCIFLMNKAAFDKLSSADKQAFLDAAKEGAKVNRARVDEDDAKG VADLRAKGMTVIDNVDKSKFVAALTPVNAQFEKEFGKANLDRIRNYK" sig_peptide 2405709..2405777 /locus_tag="Alide_2343" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 23" misc_feature 2405778..2406677 /locus_tag="Alide_2343" /note="Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl00710" /db_xref="CDD:153950" gene 2406756..2407250 /locus_tag="Alide_2344" /db_xref="GeneID:10104400" CDS 2406756..2407250 /locus_tag="Alide_2344" /inference="protein motif:PFAM:PF04290" /note="PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dia:Dtpsy_1743 tripartite ATP-independent periplasmic transporter DctQ component" /codon_start=1 /transl_table=11 /product="tripartite ATP-independent periplasmic transporter dctq component" /protein_id="YP_004126966.1" /db_xref="GI:319763029" /db_xref="InterPro:IPR007387" /db_xref="GeneID:10104400" /translation="MKSLFLTCERWSSAIAMGGACAMLALAATLGMFQILMRFVFEEP AEWTEVLIRFSLIWMVFLAIPMAFRQGAMVSVDVLYRWSPPRLRRVLDWVVCLAALAL IAIIVWWGWDYARRGGVQSMAGLESVSMFWAYLAMPVGGLFSVLGIVGNLIDPQRHEL ETAQ" sig_peptide 2406756..2406839 /locus_tag="Alide_2344" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 28" misc_feature 2406852..2407229 /locus_tag="Alide_2344" /note="Tripartite ATP-independent periplasmic transporters, DctQ component; Region: DctQ; cl01181" /db_xref="CDD:194064" gene 2407247..2408524 /locus_tag="Alide_2345" /db_xref="GeneID:10104401" CDS 2407247..2408524 /locus_tag="Alide_2345" /inference="protein motif:TFAM:TIGR00786" /note="KEGG: dia:Dtpsy_1742 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit" /codon_start=1 /transl_table=11 /product="trap dicarboxylate transporter, dctm subunit" /protein_id="YP_004126967.1" /db_xref="GI:319763030" /db_xref="InterPro:IPR004681" /db_xref="InterPro:IPR010656" /db_xref="GeneID:10104401" /translation="MTAVMISTMVLCFALTISVAVSIGLASVLGIQASNANMLISVKE MFGAINKFPLAAIPFFILAGNLMETGGISRRLVDFAKSIVGGVQGGLPMTCVLTCMIF AAVSGSSVATTFAIGSILIPALIKHGYPTSYAAALQATSAELGVIIPPSIPMILYGVS AEVSIGELFIAGFGPGILISGALMLFVWAYCKYKGWGKHDGDGRMPFGRALLKAGWAL LMPVIILGGIYGGIFTPTEASAVAVFYALVVGMLIYREIGLKDLYAVLRKSALSSAVI MFIIANAGLFAFLITRAGVPDAIGHWLQEVLKSPAYFLLGVNAALFVIGMFIETSAAI IVLGPILAPVATHFGIDPVHFGLIMVVNLALGMITPPFGVNLFAACTVARISLDRIVG HLLPFVCVILACLMVITYVPSLSLFLRDLVYAR" sig_peptide 2407247..2407357 /locus_tag="Alide_2345" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.629) with cleavage site probability 0.181 at residue 37" misc_feature 2407271..2408488 /locus_tag="Alide_2345" /note="DctM-like transporters; Region: DctM; pfam06808" /db_xref="CDD:148424" misc_feature 2407301..2408500 /locus_tag="Alide_2345" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(2408543..2409610) /locus_tag="Alide_2346" /db_xref="GeneID:10104402" CDS complement(2408543..2409610) /locus_tag="Alide_2346" /inference="similar to AA sequence:KEGG:Bpet1117" /note="KEGG: bpt:Bpet1117 metallo-beta-lactamase family protein" /codon_start=1 /transl_table=11 /product="metallo-beta-lactamase family protein" /protein_id="YP_004126968.1" /db_xref="GI:319763031" /db_xref="GeneID:10104402" /translation="MEKNTEDAVVDKHGLVLPCGPVPQGGGAKEIAPGVWWIRMSLPF SLDHINLWAIRDGEGWALVDTGIWSTETAAAWRQLFATVLPQGVTRVFVTHMHPDHIG MAGWLTRKFGCRLWISRLEYLSCRALGADTGREAPDDAIRFLQRAGWGEEAIETYRTR FGSFGKMVYALPDSYRRLQGGEEITIGGQAWRVVVGSGHSPEHVCLYCPERKLFISGD QVLPGISSNVSVFPTEPDANPLADWLASLDKIEREVPDDVLVLPAHNQPFCGLHRRIA ALRDSQHRALDRLREALQEPRRAVDVYGALFSRPVTADNMQMSLATGESLAHLNYLVA RAEATVTLGEDGCAWYQKVPG" misc_feature complement(2408819..2409463) /locus_tag="Alide_2346" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" misc_binding 2409687..2409774 /note="gcvT element as predicted by Rfam (RF00504), score 40.52" /bound_moiety="glycine" misc_binding 2409793..2409895 /note="gcvT element as predicted by Rfam (RF00504), score 55.89" /bound_moiety="glycine" gene 2409941..2411074 /locus_tag="Alide_2347" /db_xref="GeneID:10104403" CDS 2409941..2411074 /locus_tag="Alide_2347" /inference="protein motif:TFAM:TIGR00528" /note="KEGG: aav:Aave_3145 glycine cleavage system T protein; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel" /codon_start=1 /transl_table=11 /product="glycine cleavage system t protein" /protein_id="YP_004126969.1" /db_xref="GI:319763032" /db_xref="GO:0004047" /db_xref="InterPro:IPR006222" /db_xref="InterPro:IPR006223" /db_xref="InterPro:IPR013977" /db_xref="GeneID:10104403" /translation="MTASADALLTTPLNALHLELGARMVPFAGYSMPVQYPTGLMAEH LHTREKAGLFDVSHMGQLKLVGPAAAAALESLMPVDVIGLPVGKQRYGLLLNDEGGII DDLMFFNQGDDTLFLIVNGACKAGDIAHIQARIGQRCQVVTMPDQGLLALQGPQAAAA LERLVPGASQLVFMSGGGFDWNGASLFITRSGYTGEDGFEISVPGAQAEQFARALLAQ PEVKPIGLGARNSLRLEAGLCLYGNDIDATTTPPEAALNWAIQKVRRTGGARAGGFPG ADKVLAQIDDPASLARKRVGLIAKERVPVREPATLENLDGQHIGQVTSGLLSPSLNQP IALAYVQPDYAEAGTELFAMVRGKPVPMVVASTPFLPPRYHRG" misc_feature 2409941..2411068 /locus_tag="Alide_2347" /note="glycine cleavage system aminomethyltransferase T; Provisional; Region: gcvT; PRK13579" /db_xref="CDD:184160" misc_feature 2410754..2411035 /locus_tag="Alide_2347" /note="Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669" /db_xref="CDD:192119" gene 2411161..2411535 /locus_tag="Alide_2348" /db_xref="GeneID:10104404" CDS 2411161..2411535 /locus_tag="Alide_2348" /inference="protein motif:TFAM:TIGR00527" /note="KEGG: dia:Dtpsy_1740 glycine cleavage system H protein; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein" /codon_start=1 /transl_table=11 /product="glycine cleavage system h protein" /protein_id="YP_004126970.1" /db_xref="GI:319763033" /db_xref="InterPro:IPR002930" /db_xref="InterPro:IPR003016" /db_xref="InterPro:IPR017453" /db_xref="GeneID:10104404" /translation="MSLKFSKDHEWVDAADANAAVVGITVHAQDALGDVVFVDLPEVG ATLAQGDVAGVVESVKAAADVYMPVSGEIVEVNEALRADPSLANSDPLAAGWFFKVKI SNPGELDGLMDETAYGAFAASA" misc_feature 2411173..2411460 /locus_tag="Alide_2348" /note="Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-...; Region: GCS_H; cd06848" /db_xref="CDD:133457" misc_feature 2411338..2411340 /locus_tag="Alide_2348" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133457" gene 2411665..2414553 /locus_tag="Alide_2349" /db_xref="GeneID:10104405" CDS 2411665..2414553 /locus_tag="Alide_2349" /inference="protein motif:TFAM:TIGR00461" /note="KEGG: dia:Dtpsy_1739 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: Glycine cleavage system P-protein-like" /codon_start=1 /transl_table=11 /product="glycine dehydrogenase" /protein_id="YP_004126971.1" /db_xref="GI:319763034" /db_xref="GO:0004375" /db_xref="InterPro:IPR000408" /db_xref="InterPro:IPR003437" /db_xref="InterPro:IPR020580" /db_xref="GeneID:10104405" /translation="MTAALPLSALENATEFLPRHIGIDAQDEAHMLSAIGEASRRALV DSIVPRSIARAAAMDLPAPCTEAQALAELKTIAGRNRLLKSFIGQGYYGTHTPGVILR NILENPAWYTAYTPYQAEISQGRMEALVNFQTMVCDLTAMPIANASMLDEATAAAEAM TLARRSVKAKGNVFIVSGDCHPQTIEVIQTRAAPLGLAVRIVRSAEEWVAAINGDDYF AALNQYPASSGWLADWTQSAEAIHAKNAALILAADLLALTLLKAPGEMGADIVVGTTQ RFGMPMGAGGPHAAYMACRDEFKRSMPGRLVGVSVDAHGRPAYRLALQTREQHIRREK ATSNICTAQVLPAVIASMYAVYHGPEGLTRIARRVARFTAILSRGLDRLGYTARHHGT AFDTLCLKTGDATDAIAARAVSMGANLRKAWKDYLCISLDETTTRADIKLLWKIFAKD GQQLPTIESMDDGAPSLIPEGLRRTSAFLTHPVFNTHHSETGMLRYIRQLSDKDLALD RTMIPLGSCTMKLNATSEMIPITWPEFADVHPFAPADQLAGYAELDALLRRWLCQATG YAGVSLQPNAGSQGEYAGLLAIKAYHEAQGHAHRNVCLIPSSAHGTNPASAQMVGMQV VVTKCDESGNVDMADLRAKCEQHSQDLACVMITYPSTHGVFETQVKELCQIVHQHGGR VYVDGANMNALVGVAAPGEFGGDVSHLNLHKTFCIPHGGGGPGVGPVCVVEDLAPYLP GHATAGIAGGTGAVSAAPLGNAAVLPISWMYIRMMGAEGLTAATEAAILSANYISARL KDHYPTLYASANGHVAHECILDLRQLKETSGVMAEDVAKRLIDYGFHAPTLSFPVANT LMVEPTESETLAEIDRFIDAMIAIREEIRHVENGTWPQDDNPLKNAPHTAESLLKADW PHPYAREAAAYPVASLRQGKYWAPVGRVDNVYGDRNLFCSCVPVGEPA" misc_feature 2411683..2414544 /locus_tag="Alide_2349" /note="glycine dehydrogenase; Provisional; Region: PRK05367" /db_xref="CDD:180041" misc_feature 2411860..2413005 /locus_tag="Alide_2349" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(2412124..2412129,2412136..2412138,2412331..2412333, 2412415..2412417,2412424..2412426,2412484..2412486, 2412493..2412495) /locus_tag="Alide_2349" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 2412493..2412495 /locus_tag="Alide_2349" /note="catalytic residue [active]" /db_xref="CDD:99742" misc_feature 2413132..2414295 /locus_tag="Alide_2349" /note="Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2...; Region: GDC-P; cd00613" /db_xref="CDD:99737" misc_feature order(2413132..2413137,2413147..2413155,2413162..2413176, 2413213..2413215,2413219..2413221,2413225..2413239, 2413246..2413248,2413255..2413257,2413273..2413281, 2413285..2413293,2413297..2413299,2413306..2413314, 2413318..2413320,2413396..2413401,2413429..2413431, 2413489..2413500,2413507..2413512,2413516..2413521, 2413540..2413542,2413657..2413659,2413798..2413800, 2413816..2413836,2413945..2413953,2413969..2413971, 2413981..2413986,2414008..2414010,2414017..2414019, 2414032..2414034,2414038..2414040,2414062..2414064, 2414098..2414100,2414173..2414175,2414251..2414256, 2414263..2414268) /locus_tag="Alide_2349" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:99737" misc_feature order(2413210..2413212,2413393..2413398,2413405..2413407, 2413492..2413494,2413498..2413500,2413720..2413722, 2413792..2413794,2413798..2413803) /locus_tag="Alide_2349" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99737" misc_feature 2413801..2413803 /locus_tag="Alide_2349" /note="catalytic residue [active]" /db_xref="CDD:99737" gene 2414712..2414972 /locus_tag="Alide_2350" /db_xref="GeneID:10104406" CDS 2414712..2414972 /locus_tag="Alide_2350" /inference="protein motif:PFAM:PF02583" /note="PFAM: protein of unknown function DUF156; KEGG: ajs:Ajs_2799 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126972.1" /db_xref="GI:319763035" /db_xref="InterPro:IPR003735" /db_xref="GeneID:10104406" /translation="MPHTAEDKQRAITRLRRIRGQAEALERAVEAGSDCAPILQQLAA MRGAVHGLMADLLDSHVRETLAQQPSPQAVEEMRALLRSYLK" misc_feature 2414718..2414966 /locus_tag="Alide_2350" /note="Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156; Region: RcnR-FrmR-like_DUF156; cd10153" /db_xref="CDD:197388" misc_feature order(2414718..2414720,2414814..2414816,2414889..2414891, 2414901..2414903) /locus_tag="Alide_2350" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197388" misc_feature order(2414733..2414735,2414742..2414747,2414754..2414759, 2414766..2414768,2414775..2414780,2414784..2414789, 2414796..2414807,2414811..2414819,2414823..2414831, 2414835..2414840,2414844..2414849,2414856..2414861, 2414868..2414873,2414877..2414885,2414889..2414897, 2414904..2414906,2414919..2414924,2414928..2414957) /locus_tag="Alide_2350" /note="putative homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature order(2414733..2414735,2414742..2414747,2414754..2414759, 2414766..2414768,2414775..2414780,2414784..2414789, 2414796..2414807,2414811..2414819,2414823..2414831, 2414835..2414840,2414844..2414849,2414856..2414861, 2414868..2414870,2414877..2414879,2414889..2414891, 2414937..2414939,2414946..2414957) /locus_tag="Alide_2350" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature order(2414871..2414873,2414880..2414885,2414892..2414897, 2414901..2414906,2414919..2414924,2414928..2414936, 2414940..2414945) /locus_tag="Alide_2350" /note="putative homodimer-homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature order(2414889..2414891,2414937..2414939) /locus_tag="Alide_2350" /note="putative allosteric switch controlling residues; other site" /db_xref="CDD:197388" gene 2414996..2416111 /locus_tag="Alide_2351" /db_xref="GeneID:10104407" CDS 2414996..2416111 /locus_tag="Alide_2351" /inference="protein motif:TFAM:TIGR02818" /note="KEGG: dia:Dtpsy_2290 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein" /codon_start=1 /transl_table=11 /product="s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase" /protein_id="YP_004126973.1" /db_xref="GI:319763036" /db_xref="GO:0008270" /db_xref="GO:0051903" /db_xref="InterPro:IPR002328" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="InterPro:IPR014183" /db_xref="GeneID:10104407" /translation="MKSRAAVAFKAGEPLTIVEIDVAPPKKGEVLIRITHTGVCHTDA FTLSGDDPEGIFPAVLGHEGAGIVVECGEGVTSVKPGDHVIPLYTAECGECLFCKSGK TNLCVAVRATQGKGVMPDGTTRFSYNGQPVYHYMGCSTFSEYTVVAEVSLAKVNPQAN PEQVCLLGCGVTTGLGAVKNTAKVQEGDTVAVFGLGGIGLAVIQGAKLAKAGRIIAVD TNRAKFDLARTFGATDCVNPKDFDKPIQQVIVEMTGWGVDHSFECIGNVQVMRAALEC AHRGWGQSVIIGVAGAGQEISTRPFQLVTGRRWLGTAFGGVKGRSELPDMVEDAMAGK IQLKPFVTHTMGLTDINLAFDLMHEGKSIRSVVHYAD" misc_feature 2414996..2416099 /locus_tag="Alide_2351" /note="class III alcohol dehydrogenases; Region: alcohol_DH_class_III; cd08300" /db_xref="CDD:176260" misc_feature 2414999..2416102 /locus_tag="Alide_2351" /note="S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Region: adh_III_F_hyde; TIGR02818" /db_xref="CDD:131865" misc_feature order(2415113..2415115,2415119..2415121,2415146..2415154, 2415179..2415181,2415257..2415262,2415500..2415502, 2415860..2415862,2415932..2415934) /locus_tag="Alide_2351" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176260" misc_feature order(2415113..2415115,2415179..2415184,2415500..2415502) /locus_tag="Alide_2351" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176260" misc_feature order(2415116..2415121,2415500..2415502,2415512..2415514, 2415575..2415589,2415647..2415652,2415662..2415664, 2415782..2415787,2415797..2415802,2415854..2415859, 2415929..2415937,2416085..2416087) /locus_tag="Alide_2351" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:176260" misc_feature order(2415269..2415271,2415278..2415280,2415287..2415289, 2415311..2415313) /locus_tag="Alide_2351" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176260" misc_feature order(2415281..2415286,2415293..2415295,2415299..2415304, 2415308..2415310,2415314..2415316,2415755..2415757, 2415770..2415772,2415803..2415808,2415827..2415838, 2415863..2415865,2415872..2415895,2415902..2415910, 2415917..2415934) /locus_tag="Alide_2351" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176260" gene 2416221..2417081 /locus_tag="Alide_2352" /db_xref="GeneID:10104408" CDS 2416221..2417081 /locus_tag="Alide_2352" /EC_number="3.1.2.12" /inference="protein motif:TFAM:TIGR02821" /note="TIGRFAM: S-formylglutathione hydrolase; KEGG: ajs:Ajs_2801 carboxylesterase; PFAM: esterase" /codon_start=1 /transl_table=11 /product="s-formylglutathione hydrolase" /protein_id="YP_004126974.1" /db_xref="GI:319763037" /db_xref="GO:0004091" /db_xref="GO:0018738" /db_xref="InterPro:IPR000801" /db_xref="InterPro:IPR014186" /db_xref="GeneID:10104408" /translation="MSTAIELLSSHACFGGEQRFYRHASREIGLPMQFSVYLPPRALA GDAAPALLYLAGLTCTEETFMVKAGAQRLAAELGLALIAPDTSPRGAGVAGEADAWDF GEGAGFYLDATQAPWAAHWRMESWLLRELLPLVAATLPVDAVRLGIFGHSMGGHGALT LALRHPGRFRSLSTFAPICAPTRCPWGEKAFGGYLGADRAAWATHDATALMHSQAAAP YPAGILIDQGLADKFLAEQLHPHLFEAACASVGQPLTLRRHAGYDHGYYFIQSFVDDH LRHHARQLAA" misc_feature 2416221..2417078 /locus_tag="Alide_2352" /note="Predicted esterase [General function prediction only]; Region: COG0627" /db_xref="CDD:30972" misc_feature 2416236..2417072 /locus_tag="Alide_2352" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(2417092..2417271) /locus_tag="Alide_2353" /db_xref="GeneID:10104409" CDS complement(2417092..2417271) /locus_tag="Alide_2353" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004126975.1" /db_xref="GI:319763038" /db_xref="GeneID:10104409" /translation="MPDETKPTTTQDGPPQGVPAAARSREGGRIRQWLERVGLALERA EKRIMDGFRVPPHGG" gene 2417345..2418232 /locus_tag="Alide_2354" /db_xref="GeneID:10104410" CDS 2417345..2418232 /locus_tag="Alide_2354" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_2228 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="lysr substrate-binding protein" /protein_id="YP_004126976.1" /db_xref="GI:319763039" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10104410" /translation="MRNLNLDQLQTLIAIADLGTFAAAAQALHLAPPTVSLHIKELES RLQADLVVRGRRQAELTQAGKALVEEGRKLLAASDDLVELVRRRATGLDGLVKVGVSA GVSTRLLPMMLEALSRQSPGVEVRLEAVGSADAMLRLKAGTLDIGIVASPQPAVAGIR LTPWRNDLMVALLPASWGAPELVTPEWLAGRRWASFAPATQMHGLIAAWFGQAGFNPR PYLALSYPGALKSLAAASQSAAILPLEEVKDEQHSPDVQIRHLHPPLMRPMAVAHRYS PEPGRAVSSVLQVLADFAG" misc_feature 2417354..2418229 /locus_tag="Alide_2354" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 2417360..2417539 /locus_tag="Alide_2354" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2417630..2418226 /locus_tag="Alide_2354" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature order(2417672..2417677,2417681..2417686,2417693..2417695, 2417705..2417707,2417711..2417731,2418002..2418019, 2418035..2418040,2418044..2418049) /locus_tag="Alide_2354" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(2418229..2419347) /locus_tag="Alide_2355" /db_xref="GeneID:10104411" CDS complement(2418229..2419347) /locus_tag="Alide_2355" /inference="protein motif:PFAM:PF04055" /note="PFAM: Radical SAM domain protein; KEGG: ajs:Ajs_2803 radical SAM domain-containing protein" /codon_start=1 /transl_table=11 /product="radical sam domain protein" /protein_id="YP_004126977.1" /db_xref="GI:319763040" /db_xref="GO:0003824" /db_xref="GO:0051536" /db_xref="InterPro:IPR007197" /db_xref="GeneID:10104411" /translation="MHEDGILTLPLQAIKGRGAASRMVHRFARDARDAFDDGWDAQAD GAGPAAAPRTQVIWEDARSALCSNDSPDIFFEQSVNPYRGCEHGCVYCYARPTHSYLG LSPGLDFETRIIAKRNIAALLRAELARAGHRPSVVNIGSATDCYQPVERELLLTRAVI EVMRDARHPFALVTKSSGVERDLDLLAPLARERLAMACVTITTLDAALARVLEPRAAA PHRRLRTIRTLAEAGVPVGVSVAPQIPFITEDMEQVLAAARDAGATSAFYTVIRLPWE LNPLMREWLQLHYPQRAERVLARIQDLHGIAEADRRAGKAYDSRRGTRMKGTGLWADL LRQRFEKACARLGLNRQRTALDLSQYRPALARGQGVLF" misc_feature complement(2418298..2419191) /locus_tag="Alide_2355" /note="DNA repair photolyase [DNA replication, recombination, and repair]; Region: SplB; COG1533" /db_xref="CDD:31722" misc_feature complement(2418574..2419113) /locus_tag="Alide_2355" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" gene 2419615..2420022 /locus_tag="Alide_2356" /db_xref="GeneID:10104412" CDS 2419615..2420022 /locus_tag="Alide_2356" /inference="protein motif:PFAM:PF01272" /note="PFAM: transcription elongation factor GreA/GreB domain-containing protein; KEGG: ajs:Ajs_2805 GreA/GreB family elongation factor" /codon_start=1 /transl_table=11 /product="transcription elongation factor grea/greb domain-containing protein" /protein_id="YP_004126978.1" /db_xref="GI:319763041" /db_xref="GO:0003677" /db_xref="GO:0003711" /db_xref="InterPro:IPR001437" /db_xref="GeneID:10104412" /translation="MQRKPHIILSSLDMERIEALLEKQTAPFPGRDALEAELDRADVF DPKDMPPNVVTMNSTVRFTMLESGKTNTLTLVYPKEMDGSGDKVSIFAPVGIALLGLA VGDEFQMPSPTGQVTVRVDGIEFQPENAGELHR" misc_feature 2419615..2420019 /locus_tag="Alide_2356" /note="nucleoside diphosphate kinase regulator; Provisional; Region: PRK05753" /db_xref="CDD:180236" misc_feature 2