LOCUS NC_014763 3421 bp DNA circular BCT 04-DEC-2010 DEFINITION Sulfuricurvum kujiense DSM 16994 plasmid pSULKU04, complete sequence. ACCESSION NC_014763 VERSION NC_014763.1 GI:313569999 DBLINK Project: 60789 KEYWORDS . SOURCE Sulfuricurvum kujiense DSM 16994 ORGANISM Sulfuricurvum kujiense DSM 16994 Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum. REFERENCE 1 (bases 1 to 3421) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of plasmid4 of Sulfuricurvum kujiense DSM 16994 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3421) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (03-DEC-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3421) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (22-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP002359. URL -- http://www.jgi.doe.gov JGI Project ID: 4087653 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfuricurvum kujiense YK-1, DSM 16994 collection_date :: Missing lat_lon :: 40.190524 141.775583 depth :: Missing alt_elev :: Missing country :: Japan environment :: Missing num_replicons :: 5 ref_biomaterial :: DSM 16994, ATCC BAA-921 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: 15545474 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05071 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Isolation Site :: Drain water from an underground crude-oil storage cavity; Japan, Kuji, Iwate Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C pH :: 7.0 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3421 /organism="Sulfuricurvum kujiense DSM 16994" /mol_type="genomic DNA" /strain="DSM 16994" /isolation_source="drain water from underground crude oil storage cavity" /db_xref="taxon:709032" /plasmid="pSULKU04" /country="Japan: Kuki, Iwate" /lat_lon="40.190525 N 141.775589 E" gene 733..1524 /locus_tag="Sulku_2815" /db_xref="GeneID:10004217" CDS 733..1524 /locus_tag="Sulku_2815" /note="InterPro IPR000525; KEGG: gyc:GYMC61_3588 initiator RepB protein; PFAM: initiator RepB protein; SPTR: Putative Rep; PFAM: Initiator Replication protein" /codon_start=1 /transl_table=11 /product="initiator RepB protein" /protein_id="YP_004061407.1" /db_xref="GI:313570000" /db_xref="GeneID:10004217" /translation="MNPREARELLQKQKEEEVKDLVKISNSLVEGFVSKSNAVALKML FYIAKQQYKKNEWDIVEFTLSADDFAKYCNLDHRIIKDNIKTMRSTSVTFVERDNKGR ITVEEGIVIVPRSRYDYTTKTIEITMFKKILDLILEVEERFTTIDVKNVMELESKYSI RMAMILEQIFGFKGNPENWDVQQQKKFSLDDLNDLFGTKYKNFTDFERKVLKPTKEEM DDKSEISFSYVINKGYNSPLDRGRPKALSVTIKLVQNKLRQRRLF" misc_feature 805..1428 /locus_tag="Sulku_2815" /note="Initiator Replication protein; Region: Rep_3; cl03080" /db_xref="CDD:186548" gene 1521..1817 /locus_tag="Sulku_2816" /db_xref="GeneID:10004214" CDS 1521..1817 /locus_tag="Sulku_2816" /note="KEGG: modification methylase, type II R/M system; SPTR: Replication protein 15" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004061408.1" /db_xref="GI:313570001" /db_xref="GeneID:10004214" /translation="MNEKPSIEQWDMMRYFLSKLNIDEPFDQITWAQQIKHIQDTEGY SLDDIRFVIDWLSSSKGTWFKKNIPDAYMLRKHFKTMHEITWENSKNKRKEEKC" gene 1811..1903 /locus_tag="Sulku_2817" /db_xref="GeneID:10004215" CDS 1811..1903 /locus_tag="Sulku_2817" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004061409.1" /db_xref="GI:313570002" /db_xref="GeneID:10004215" /translation="MLTESVRDIIDIVTVVLLAYLVFKKTPTRN" gene 2642..3286 /locus_tag="Sulku_2818" /db_xref="GeneID:10004216" CDS 2642..3286 /locus_tag="Sulku_2818" /note="KEGG: abu:Abu_1713 hypothetical protein; SPTR: Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004061410.1" /db_xref="GI:313570003" /db_xref="GeneID:10004216" /translation="MLTDRDLEMIKFTNIYGRTFLPVLGRTFFPSEKIARDRIAKLVR QKIVRYIDTDRVKIGRAVVLTHETQKYLVDIGLEPKKVNSGWTTINHNIIEQTAHYWL SKLGEVERTSVAKHGAKMEHVPDMILTLPSGGRVFVEVETSRKARGRYDGIFEKIRKE DPAVVLYVLPKEKQIQSFAKFLPEYERVRVIDIDTLIENVKTTGKVSAKFQHEF" sig_peptide 2642..2746 /locus_tag="Sulku_2818" /note="Signal predicted by SignalP 3.0 HMM" ORIGIN 1 tggatggggt gggcgggatt tccttgaagg gagtctttta acttgtctca cttactgatg 61 gtctttttgg tgctgatggt gcttgcaccc gctctgcatt aatcaaaaac gagggaataa 121 tcacccctcg gactatctgc tacgctcaaa agctcaaaaa tgcctctaaa agcgtttttt 181 acctccaaaa cgtaaaatcc ccctcttttt ctctcaaaat cgtttttagg gctgtttctg 241 tgattcttac tgaggctttt aagccgaaga gaggaacgaa gtgacgggag cttatcttaa 301 cgcagtgatt taaacacgat cagctctttc gtggggtcga agtattggcg aagcaatgga 361 agattaaccc ctcgttctca atgatcgcat tttctctttt caccgcttcc caaatgctac 421 ttttttaggg tcaaaaataa taagagattt cggcccgaaa tccgtcttta tttaaataca 481 ccgtagggat aaacttatta gagactttta ttagatacta ttataggggg tgtgaaaaac 541 cctctcaaac gccctacaca aggggcttag ctggaaatct tttaacgggt gaattgtcgt 601 attttaacgg gtgaattgtc gtattttaac gaccaaaacc gttttttaga gaccttttta 661 tattaaggtc gctttaatat ttagcgtcct atacttttat aaagtcttta tattacaaat 721 gaggtcgtta aaatgaaccc gagagaagca agagagctcc tacaaaagca aaaagaggag 781 gaggttaaag acctcgtaaa gatatcgaat agcctcgtcg agggcttcgt atccaaaagc 841 aacgccgttg ccctaaagat gcttttctat atcgccaaac aacagtataa aaaaaacgag 901 tgggacatcg tggagtttac gctatcggcg gatgattttg cgaaatattg caacctagat 961 caccgcataa taaaggacaa tataaaaaca atgcgtagca cttctgtaac gttcgtagaa 1021 cgggacaaca aaggacgtat aacggtcgaa gagggtattg tgatcgttcc gagatcaaga 1081 tacgactaca ccacaaaaac catagaaatt accatgttta aaaagatcct cgatttaatc 1141 ctcgaagtag aggaacggtt cacaaccata gacgttaaaa acgtcatgga gctggagagc 1201 aaatacagca tccgcatggc gatgatttta gagcagattt tcggatttaa gggcaatcct 1261 gagaattggg acgtacaaca gcaaaagaag ttttctctcg atgatttaaa cgatttgttt 1321 ggtacaaagt acaaaaactt caccgatttt gaacgtaaag ttctcaaacc gacaaaagaa 1381 gaaatggacg ataaaagcga gatcagcttt tcatacgtca ttaacaaggg gtacaactct 1441 ccccttgatc gaggacgacc gaaagctctt tcggtcacga ttaaactcgt acaaaacaaa 1501 cttcgacaaa ggagattatt ttgaacgaaa agccttccat tgagcaatgg gacatgatgc 1561 gatattttct atcgaaactc aatattgatg aaccattcga tcagattacc tgggcgcaac 1621 aaatcaaaca tatacaagat accgaaggtt actcactaga tgacattcgc tttgtaattg 1681 attggctatc cagtagtaaa ggaacatggt ttaagaaaaa catacctgat gcgtatatgc 1741 ttcggaaaca tttcaaaact atgcacgaaa taacttggga aaactcaaaa aataagcgaa 1801 aggaggaaaa atgctaaccg aatcagtccg tgacattatc gacatcgtta ccgtagtgct 1861 tttggcttat ctcgttttta aaaaaacgcc tacccgaaat taaagatcga ttaccctaaa 1921 aaagtagctt ttgctttgca tttgccaaga tcaacaacaa cggaacgccc ggaaaaatct 1981 ttgattttgg aggctgttgt tgatcgcgga atgagtgcaa cgaatggagg gtaaggatga 2041 tttgccccgg cacgcccgga gagagcaacg cgaacggagg ctaggcaaat aatccgcgca 2101 gtgagcgaag cgaacggagg gggggtgtca gccgataaat agcgtggaat tttcgcagaa 2161 aattagagcg taaatttatc gtgcgcccga ctaagatagg gtggcaaatt cagcttagtt 2221 tttgaggcga aagacgagga aaacggtcat tgcagatacg ggagtaaatg caatgaaagc 2281 ttaatttggg agcgggaaaa tttggaatga aaacaataag ctaaatgctt atttttgaaa 2341 tttcatattt ctctcgtccc acgctatctt agtcgggcgt tagccagaca cccccctaga 2401 gggcaacgcc cgataatcaa taagcagagc gcaacgcaaa tttatgcgtt gcagcgtcgc 2461 gccaatcccc gaacgcacgg gcgtttcggg gtgtctttga atcagtcgta gcccttaggc 2521 tatgagctga ttctctcccc cgtcccctat tatgtgacct attataaacc cctattatgg 2581 cgatgccgta gggtttataa tgcggtaaca taataacttt gctatgaaaa aggaaagtta 2641 tatgctgaca gatcgagacc tcgaaatgat caaatttacg aacatttacg ggcgtacttt 2701 tttgcccgta cttgggcgta cttttttccc gtccgagaag atcgcacggg acagaattgc 2761 gaaactcgtg agacaaaaaa tagtccgata tatagacacg gatagagtca aaatcgggcg 2821 ggcggttgtc ctcactcacg agactcaaaa gtacctagtt gatatcggct tagagcctaa 2881 aaaagtgaac agtggatgga cgactattaa ccacaatatc atcgaacaga cggcgcacta 2941 ttggctctca aagctagggg aagttgagcg cacgagcgta gcaaagcacg gcgcgaaaat 3001 ggaacacgtc cccgatatga ttctgaccct gccgagcggt ggccgtgtat tcgtcgaagt 3061 cgagacaagc cgaaaagcac gggggagata cgacgggatt ttcgagaaga tcagaaaaga 3121 agatcccgcc gttgttctgt acgtcctccc aaaagaaaag caaatacaga gcttcgctaa 3181 gttcctcccc gaatatgaac gggtgagagt gatcgacatt gacaccctca tcgagaacgt 3241 aaagacaacg ggcaaagtga gcgcaaaatt tcagcatgag ttttaaatgc tacttttttg 3301 gggttcgtga tataatttca tcgtgaacaa gttaagagct ccttccgcct gattaacgga 3361 tagaggaaat gggtggcgat cttcgggtcg tcgccctttt tttttgccaa atttttggca 3421 t //