LOCUS NC_014728 6223 bp DNA circular BCT 05-JUL-2011 DEFINITION Lactobacillus delbrueckii subsp. bulgaricus ND02 plasmid unnamed, complete sequence. ACCESSION NC_014728 VERSION NC_014728.1 GI:312984524 DBLINK Project: 60621 KEYWORDS . SOURCE Lactobacillus delbrueckii subsp. bulgaricus ND02 ORGANISM Lactobacillus delbrueckii subsp. bulgaricus ND02 Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. REFERENCE 1 (bases 1 to 6223) AUTHORS Sun,Z., Chen,X., Wang,J., Zhao,W., Shao,Y., Guo,Z., Zhang,X., Zhou,Z., Sun,T., Wang,L., Meng,H., Zhang,H. and Chen,W. TITLE Complete Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus Strain ND02 JOURNAL J. Bacteriol. 193 (13), 3426-3427 (2011) PUBMED 21515763 REFERENCE 2 (bases 1 to 6223) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-NOV-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6223) AUTHORS Chen,W., Zhang,H., Sun,Z., Chen,X., Guo,Z., Wang,J., Wu,L., Zhang,X., Zhou,Z., Sun,T., Wang,L. and Meng,H. TITLE Direct Submission JOURNAL Submitted (15-NOV-2010) State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, Jiangsu 214122, China COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP002342. Source DNA available from Dr. Heping Zhang(hepingdd@vip.sina.com) and Dr. Zhihong Sun (sunzhihong78@163.com) at Inner Mongolia Agricultural University, China. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6223 /organism="Lactobacillus delbrueckii subsp. bulgaricus ND02" /mol_type="genomic DNA" /strain="ND02" /sub_species="bulgaricus" /db_xref="taxon:767455" /plasmid="unnamed" gene 278..856 /locus_tag="LDBND_p001" /db_xref="GeneID:9988410" CDS 278..856 /locus_tag="LDBND_p001" /codon_start=1 /transl_table=11 /product="Putative mobilization protein" /protein_id="YP_004035047.1" /db_xref="GI:312984525" /db_xref="GeneID:9988410" /translation="MENSAGMLSVGQIAKMLKTNRQNIYNVLKTEHIKADGYNDKHYS LYSPETIQEIKAALSKKATLRSKKVVAKEQAEEIADLKNQLSEQQRLTTWLQSQLVQL QVEADKLRSQNSQLQLDHAKTQLLIGQVDQEKTTLKAENDRLSAENDKLGQLTDKVLK DAQRAEEDAQKAKADLDKARRAGLWSRITRNY" gene 1157..1678 /locus_tag="LDBND_p002" /db_xref="GeneID:9988405" CDS 1157..1678 /locus_tag="LDBND_p002" /codon_start=1 /transl_table=11 /product="Putative transposase" /protein_id="YP_004035048.1" /db_xref="GI:312984526" /db_xref="GeneID:9988405" /translation="MTYKEWTDSDHLELVKNWKLHGLTNVEIAQRIGIAEKTLYVWLK KSPKLKKAIRGGKNIARARAENALYELALNGDRQALFFWLKNNYRERYSDKPLSPAEA DLMSQKARLAKLQADLAEAQLKAIKEDQGDQATQLNNLLDSLKEAVLDEGISPDNIVP TGNGLIIDDISDS" gene 2333..2527 /locus_tag="LDBND_p003" /db_xref="GeneID:9988406" CDS 2333..2527 /locus_tag="LDBND_p003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004035049.1" /db_xref="GI:312984527" /db_xref="GeneID:9988406" /translation="MIRQNSDVRAAIKASGLKQYEVATLMNVSASYLSQLLLQPLSEG HKKRIMAAIKQGESLKGEQE" gene 2527..2754 /locus_tag="LDBND_p004" /db_xref="GeneID:9988407" CDS 2527..2754 /locus_tag="LDBND_p004" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004035050.1" /db_xref="GI:312984528" /db_xref="GeneID:9988407" /translation="MMSLEEREREIEKVVRIAEADFNNAYHLNAINKEDVIKNRAYKY AEVLKLQELLALNKTIKDGLNGIEMSVDLIE" gene 2769..3740 /locus_tag="LDBND_p005" /db_xref="GeneID:9988408" CDS 2769..3740 /locus_tag="LDBND_p005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004035051.1" /db_xref="GI:312984529" /db_xref="GeneID:9988408" /translation="MNNSEKTSLMAEPYNSNRNAIDRLRVNQKALQAGSVKREENYIA DESGNSEGFRMAFYTAYKSGVQLAIPVEAEPGKMVINETFSKVQHLLIASWYSQADRA SNFRIQLTFKEISEALGYSRSQATALRKQLRDLITPLVRCTFVTSNKDSIDAVNLFAA GSYSKGQLTMWLTPNMAETFLSEESSTEYFPLSLLKLKGTAYYLALKIMHNANINARW RADRVDRLGLEDTLKALPTLPDPVENAQGTSRHLQRQIIAPLAKAIEELEAVTGIVVR PSQPLKGLKAKDLSKVTLNVTDWGQVDIAELTRKKRKRLRKNNVRED" gene 4035..6101 /locus_tag="LDBND_p006" /db_xref="GeneID:9988409" CDS 4035..6101 /locus_tag="LDBND_p006" /codon_start=1 /transl_table=11 /product="Putative primase-helicase" /protein_id="YP_004035052.1" /db_xref="GI:312984530" /db_xref="GeneID:9988409" /translation="MNNLVKPADLKSLISLPEYIASVVSMDSKGFFSCVNPNHPDKHP SMCVDQNHPQYVHCFSCQASYDLFDCWALINDGVTETRKNSAGKEKPVYNFNAVAIEI ADHYGYTLIGDPANNLPEPPLPEPEPEPAQTQTSNDSNIRAQLEAWHASLNQTDYLQK RGITQTTAEIFNLGYSALTNSIIIPYGQDGYYVQRAINPIEKHDRYRFPIGQVRVYNA EALKECKTVFIVEGQFDALSIMQESGVGAVATSTSQTRLIVKTLQKFKEQDPTINPTI ILSMDNDRAGQKANRALQRDLEAHGFTCYVNPVNGDYKDANEFLVKDREGFRQKLQHV INQPDNWLDKYYADIKNRHDYPDNIPTGFKNLDDELDGGLQPKLYVLGAVSSLGKTTF ALNIADNLAKQGRHVFFFSMESSKREVTDKLLSRASCLSNGHKWTQLQVSRGAWLNNA EDKEEFDGLFKAFSRYQRFLHIYDNRVKASQVKDLVNSWLGNHPDEKKPLVVVDYLQI LQAEQDNVTDKAKVTDSVSVLSELTKQAEVPVLVISSLNRASYWQDVSFESFKESGEI EYSADVMLGLEFAHREEYITVQKNGHVELNKEKFDQRKQEVPRRVEMVILKNRTGKTG GHIFFKYNAMFNSYQACTEKEAAIANNFKMLYHTKQVGKPVEAARIEYTVDPETGRVT EKNQDK" misc_feature 4056..>4238 /locus_tag="LDBND_p006" /note="CHC2 zinc finger; Region: zf-CHC2; cl02597" /db_xref="CDD:141551" misc_feature 4059..5564 /locus_tag="LDBND_p006" /note="DNA primase (bacterial type) [DNA replication, recombination, and repair]; Region: DnaG; COG0358" /db_xref="CDD:30707" misc_feature 4476..>4703 /locus_tag="LDBND_p006" /note="DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275" /db_xref="CDD:191985" misc_feature 4707..4952 /locus_tag="LDBND_p006" /note="TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication...; Region: TOPRIM_primases; cd01029" /db_xref="CDD:173779" misc_feature order(4725..4730,4737..4739,4875..4877,4881..4883, 4887..4889) /locus_tag="LDBND_p006" /note="active site" /db_xref="CDD:173779" misc_feature order(4725..4727,4875..4877) /locus_tag="LDBND_p006" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173779" misc_feature order(4731..4736,4752..4757) /locus_tag="LDBND_p006" /note="interdomain interaction site; other site" /db_xref="CDD:173779" misc_feature 5136..5906 /locus_tag="LDBND_p006" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature order(5181..5186,5196..5204) /locus_tag="LDBND_p006" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature order(5184..5186,5196..5204,5259..5261,5265..5270, 5544..5549) /locus_tag="LDBND_p006" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature 5532..5546 /locus_tag="LDBND_p006" /note="Walker B motif; other site" /db_xref="CDD:29986" ORIGIN 1 catggcttaa atttggcata cagacagcaa ggggagcggg caacggggaa gagcagacat 61 ttaattcgtt tttgggcgtg tcagaacctg ttaaaacctt actttttaca aaaaaatccg 121 gcggcgaaag ccttgaaaaa acttatgtgg caaaaaaatt ccggactgat tcggactttt 181 tctttcctgg ccaggccttc taatggtcag taaggtcagc cgcttcagcg gtcaatcgtg 241 tataatatag tcaagattga caagaggagg gctgacaatg gaaaatagcg ctggcatgct 301 gtcagttggt caaatagcta aaatgctgaa gaccaacaga cagaacattt acaacgtgct 361 gaaaactgaa cacattaaag cggacggcta caatgacaag cactattcac tgtatagccc 421 ggaaacgatt caagagatca aggccgctct gtctaagaaa gcaacgctga gaagtaagaa 481 ggtagtagca aaagagcagg ctgaagagat agctgacttg aagaatcagc tgtcagaaca 541 gcagagattg acaacctggc tacagtctca gctggttcaa cttcaagtag aggctgacaa 601 gctcaggagt cagaacagcc agttacagct agaccacgca aagactcagc tccttattgg 661 ccaggttgac caggagaaga caacactgaa ggccgaaaat gaccgactga gcgctgaaaa 721 tgacaagcta ggacaactaa ccgacaaggt gctgaaggac gctcagagag cagaagagga 781 cgctcagaag gctaaagctg atctagataa agcccggcgg gctggcttat ggtctagaat 841 caccaggaat tattaagagt ggtatagccg ttatctgact ttgtgaaatt ccttattggg 901 tctgtcagat cagcgattta aaacctatac gggtttgtga atcctggttt acgaaattgg 961 gcgataaaga agcccgtaag tgcaaggata gaaggttagt tccaataaga cacattatgt 1021 aaagttgtaa gtggtatacc tgtaattgat tgacaggaac tatacatagg ctagacactt 1081 gtcagcattg actgtagcgg ctttacaatg acactagatc tacactataa ttacagtaga 1141 aagagatttt gcacgcatga cttacaaaga atggactgat tcagatcatt tagagttagt 1201 caaaaattgg aaattacacg ggctgactaa cgttgaaata gctcaaagaa taggcattgc 1261 tgagaagact ctgtacgtat ggttgaagaa gtctcctaag ctgaagaagg ccattagagg 1321 cggcaagaat attgccaggg ctagggctga gaatgcactg tatgagcttg ctcttaatgg 1381 cgataggcaa gcccttttct tttggctcaa aaacaactac agagaacgct actcagacaa 1441 gccgttaagc ccggctgaag ccgatttgat gagtcagaag gcaaggctgg ccaaattaca 1501 ggctgacctg gctgaggctc agctgaaggc cattaaggaa gaccagggag accaagcaac 1561 gcaattaaac aacctgttag acagtctgaa ggaagccgtg ttagatgagg ggattagccc 1621 cgataacatc gttcctactg gcaacggctt aattatcgat gatatttctg actcttaggt 1681 ttacacgaca ttgacagtgt aaacacaaga tagcggaaaa gattctgatt attatattta 1741 caagcactgt atattgtgct attctaagat gtgctaaacg gatttgggga atgcaactaa 1801 ctgctgaaag gtatcaactt ttttgttgcg ctctttaatt ctttagcaaa aagctagata 1861 tcaaaaaaga gcgagaccga gtattgcttc acgggttcgc tcttattttt ttatctggct 1921 agttgcctac tggtactata ctgacaccct agcggcatgt ttgcggtatt gcactacagc 1981 ggcaacaatg gtaaaaataa taataggtaa caaaaaaagc ctttagtact ggcaatacta 2041 gaggcgggct gtgtttagct ctggtaaagc ttaacacggt tagagttgta gagttgttgt 2101 atttgtcttt acggaattat gatacgttta aaagtagcac cttgtcaagg gtaacgtatc 2161 acttctaaag tatatatagt agttttcttc taacattatg ttgtaaaaac ctaacatttt 2221 gtagacaaac actatacttc tatgactcta accatgttta agacaggcca ggctaacacc 2281 ctactggcct gttttttgtt gccaaaattt caaaagaaag gcggtaacaa ccgtgattag 2341 acaaaacagc gatgttagag cggctattaa agcttctggc ttgaagcaat atgaggtagc 2401 tactttgatg aatgtttcag ccagctatct cagccagctg ttactacaac cattgtcaga 2461 aggccataaa aaacgcatta tggcggcgat taaacaaggt gagtcattga agggagaaca 2521 agaataatga tgagcttaga agagcgtgag cgtgagattg aaaaggtagt acgcattgct 2581 gaagctgact tcaacaacgc ttatcacttg aatgctatca acaaggaaga cgttattaag 2641 aaccgggctt acaagtacgc tgaagtgctg aagcttcaag aattgctggc attgaacaag 2701 accattaagg acgggctgaa tggtattgaa atgtcagtag atctcattga gtagcgggga 2761 gacccgctat gaacaatagt gaaaagactt ctctaatggc tgagccgtac aactcaaaca 2821 gaaacgccat tgacagactc agagtcaacc agaaggcctt acaggctggc tctgtcaagc 2881 gtgaagagaa ttatatagcc gatgaatccg gcaattcaga gggcttcaga atggccttct 2941 acacggcata taagagcggc gttcagttag ctataccagt agaggctgag cccggaaaaa 3001 tggtaattaa tgagaccttc agcaaggttc aacatctact aattgccagc tggtatagcc 3061 aggctgacag agcaagcaac ttcagaatac agcttacctt caaagagatc tcagaggcgc 3121 taggatacag cagaagccag gctacagcgc tcagaaaaca gctcagagac ctaattacac 3181 cgctagtccg ctgtactttt gttaccagca ataaagacag catagacgct gtaaaccttt 3241 ttgcggctgg tagctacagc aagggacagc tgacaatgtg gttaactcct aacatggctg 3301 aaacgtttct gtcagaagaa tcatctacag aatattttcc gttatcgtta ctgaagctaa 3361 aagggacagc ctactacctg gccttgaaga tcatgcacaa cgcaaacatt aatgcacgct 3421 ggcgtgctga cagggttgac agattgggct tagaagacac gctgaaggcc ttgcctacac 3481 tccccgaccc ggtagagaat gcacaaggaa ctagtagaca cttacagcgc caaatcatag 3541 cccccctggc taaggctatt gaagagcttg aggccgtcac tggcattgtc gttagaccta 3601 gccagccgct aaagggactg aaggcgaaag atctgtctaa agtcactttg aatgtcactg 3661 attggggaca ggttgacata gcagaattga ccagaaaaaa gcgaaaacgt ttgcgaaaaa 3721 ataatgttcg tgaggactaa aactatattt tttctaattc gtatgtaggt aattatggcc 3781 gcaaatgtag gtaattatgg ccgcaaatgt aggtaattat ggccgcattg tgaaatttgg 3841 gcaagtgcct ttaggccttg agccagtaag gagtaagcgt attttttaaa aaagtttcac 3901 ttgttaatag tttaatagta ttaaaagcaa cggcacagct tgacgctggc cttgcttgaa 3961 aattgaaaaa agatgaaaca gccagggaga gcagagactt cttactggct tgttttctaa 4021 acgaggtatc tagcatgaac aacttagtta aaccagcaga tttaaagagc ttgatctctt 4081 taccggaata cattgccagc gtggtcagca tggactctaa aggcttcttt agctgtgtca 4141 atccgaacca ccccgacaag catcctagca tgtgtgtaga tcagaaccac ccgcaatatg 4201 ttcattgctt cagttgccag gccagttatg acctgtttga ctgttgggcg ctgattaatg 4261 acggcgtgac agagaccagg aagaatagtg ctggcaagga aaagccagtc tacaacttca 4321 acgctgtagc aatagagata gctgaccatt acggatatac ccttattggc gacccggcaa 4381 ataacttgcc agaaccgcca ttacccgaac cagaaccaga gccagctcaa actcagacca 4441 gcaatgacag caatatcaga gcccaattag aagcctggca tgctagcttg aatcagactg 4501 actatcttca gaagcgggga atcactcaga caacagcaga gattttcaat ttaggctact 4561 cagcactgac caacagcatt attattcctt acggtcagga cggctattac gttcagagag 4621 caattaatcc gattgagaaa catgaccgct acagattccc tattggccag gtgagagtct 4681 acaacgctga ggcgctgaaa gaatgcaaga cggtattcat tgttgaaggt cagtttgacg 4741 ctctgtcaat catgcaagaa tccggtgtag gagctgtagc aacttcaacc agtcagaccc 4801 ggcttattgt caagacctta caaaagttca aagagcaaga cccaacaatt aacccgacta 4861 tcattctcag tatggacaac gacagagcag gccagaaggc gaatagagcc cttcagaggg 4921 acttagaagc gcatggcttt acttgctatg tcaacccggt taacggcgat tataaggacg 4981 ctaacgagtt tctggtaaag gatagagagg gcttcagaca gaagcttcag catgtcatca 5041 accagcccga caactggctt gacaagtact atgctgacat caaaaaccgc catgactacc 5101 cggataatat ccctactggc ttcaagaatt tagatgatga gcttgacggc gggcttcagc 5161 ctaaactcta tgttttaggt gctgtcagtt cattagggaa aacgactttc gccttgaata 5221 ttgctgacaa cctggctaaa caggggagac atgttttctt cttcagcatg gaatctagca 5281 agagagaagt gacggacaag cttttaagcc gggctagctg tctctctaac ggccataaat 5341 ggactcagct acaagtcagc cggggagcat ggttaaacaa tgctgaggac aaagaagagt 5401 ttgacggcct gtttaaagcc ttcagccgtt accagcgctt cttacacatc tatgacaaca 5461 gggttaaggc aagtcaggta aaagacctgg tcaatagctg gcttggcaac cacccggacg 5521 aaaagaagcc gcttgtagtc gttgactatc ttcagatctt gcaagctgag caggacaacg 5581 tgacagacaa ggccaaggtg acagacagcg tgagtgttct ctcagagctg actaaacagg 5641 ctgaagttcc tgtcttggtc atctcatcat tgaaccgggc ttcttactgg caagacgtaa 5701 gttttgaatc cttcaaggaa tccggggaaa tcgaatactc agccgatgtt atgttaggtt 5761 tggaatttgc tcatcgtgag gagtacatta cagttcagaa aaacggccat gttgaattga 5821 acaaagagaa gtttgaccag cggaaacagg aagtccctag acgggttgaa atggtcattc 5881 tgaagaatcg aactggcaag acaggcggtc atatcttctt caagtacaac gccatgttta 5941 acagttacca ggcatgcact gagaaggaag cggcgatagc caacaacttc aaaatgctgt 6001 atcacacaaa acaagtaggc aagccagttg aggcggctag aattgaatac acggtagacc 6061 cggaaacagg ccgggtaaca gagaagaatc aagataaata gagctaaaga agctggccag 6121 gaatggctgg cttttgtttt gccttcagac gctctcagaa gctcatagag ccgttctgag 6181 cctggcctgg tagatttggc cataaacccg gctaaatacc ccc //