LOCUS NC_014551 3980199 bp DNA circular BCT 31-MAR-2011 DEFINITION Bacillus amyloliquefaciens DSM 7, complete genome. ACCESSION NC_014551 VERSION NC_014551.1 GI:308171891 DBLINK Project: 53535 KEYWORDS complete genome. SOURCE Bacillus amyloliquefaciens DSM 7 ORGANISM Bacillus amyloliquefaciens DSM 7 Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. REFERENCE 1 (bases 1 to 3980199) AUTHORS Borriss,R., Chen,X., Rueckert,C., Blom,J., Becker,A., Baumgarth,B., Fan,B., Pukall,R., Schumann,P., Sproer,C., Junge,H., Vater,J., Puhler,A. and Klenk,H.P. TITLE Relationship of Bacillus amyloliquefaciens clades associated with strains DSM7T and FZB42: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on their discriminating complete genome sequences JOURNAL Int. J. Syst. Evol. Microbiol. (2010) In press PUBMED 20817842 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 3980199) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-OCT-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3980199) AUTHORS Blom,J. TITLE Direct Submission JOURNAL Submitted (24-NOV-2009) Blom J., Bielefeld University, Cebitec, Universitaetsstr. 25, 33615, GERMANY COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to FN597644. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3980199 /organism="Bacillus amyloliquefaciens DSM 7" /mol_type="genomic DNA" /strain="DSM 7" /db_xref="taxon:692420" gene 412..1752 /gene="dnaA" /locus_tag="BAMF_0001" /db_xref="GeneID:9777897" CDS 412..1752 /gene="dnaA" /locus_tag="BAMF_0001" /function="16.9: Replicate" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein DnaA" /protein_id="YP_003918597.1" /db_xref="GI:308171892" /db_xref="GeneID:9777897" /translation="MENILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTIT APNEFARDWLESRYLHLIADTIYELTGEELSVKFVIPQNQDEENFMPKPQVKKAAKEE PSDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHL MHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPP DLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDIN ADLAAEALKDIIPSSKPKVITIKEIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMY LSREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLIDDEQLQQQVKEIKEQLK" misc_feature 418..1749 /gene="dnaA" /locus_tag="BAMF_0001" /note="chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149" /db_xref="CDD:178902" misc_feature 433..>774 /gene="dnaA" /locus_tag="BAMF_0001" /note="hypothetical protein; Validated; Region: PRK06672" /db_xref="CDD:180654" misc_feature 784..1218 /gene="dnaA" /locus_tag="BAMF_0001" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 862..885 /gene="dnaA" /locus_tag="BAMF_0001" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(865..888,1051..1053,1150..1152) /gene="dnaA" /locus_tag="BAMF_0001" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1039..1056 /gene="dnaA" /locus_tag="BAMF_0001" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1189..1191 /gene="dnaA" /locus_tag="BAMF_0001" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1477..1746 /gene="dnaA" /locus_tag="BAMF_0001" /note="C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571" /db_xref="CDD:119330" misc_feature order(1546..1548,1570..1575,1594..1596,1612..1620, 1645..1659,1666..1668,1675..1680) /gene="dnaA" /locus_tag="BAMF_0001" /note="DnaA box-binding interface [nucleotide binding]; other site" /db_xref="CDD:119330" gene 1938..3074 /gene="dnaN" /locus_tag="BAMF_0002" /db_xref="GeneID:9778689" CDS 1938..3074 /gene="dnaN" /locus_tag="BAMF_0002" /EC_number="2.7.7.7" /function="16.9: Replicate" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit beta" /protein_id="YP_003918598.1" /db_xref="GI:308171893" /db_xref="GeneID:9778689" /translation="MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSF TGSDSDISIESFIPKEEDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQY LTIIRFGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRP ILTGVNWKVENGELLCTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDS QELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAID RASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKY MMDALKVLEGADIRISFTGAMRPFLIRTPNDETIVQLILPVRTY" misc_feature 1938..3068 /gene="dnaN" /locus_tag="BAMF_0002" /note="DNA polymerase III subunit beta; Validated; Region: PRK05643" /db_xref="CDD:180180" misc_feature 1938..3065 /gene="dnaN" /locus_tag="BAMF_0002" /note="Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the...; Region: beta_clamp; cd00140" /db_xref="CDD:29053" misc_feature order(2007..2009,2175..2177,2196..2198,2553..2555) /gene="dnaN" /locus_tag="BAMF_0002" /note="putative DNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29053" misc_feature order(2178..2180,2187..2189,2265..2267,2271..2273, 2775..2777,2874..2879) /gene="dnaN" /locus_tag="BAMF_0002" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29053" misc_feature order(2472..2474,2478..2489,2928..2930,3054..3065) /gene="dnaN" /locus_tag="BAMF_0002" /note="beta-clamp/clamp loader binding surface; other site" /db_xref="CDD:29053" misc_feature order(2472..2474,2478..2483,2700..2702,2808..2810, 2850..2855,2937..2939,3054..3065) /gene="dnaN" /locus_tag="BAMF_0002" /note="beta-clamp/translesion DNA polymerase binding surface; other site" /db_xref="CDD:29053" gene 3214..3429 /gene="yaaA" /locus_tag="BAMF_0003" /db_xref="GeneID:9778700" CDS 3214..3429 /gene="yaaA" /locus_tag="BAMF_0003" /codon_start=1 /transl_table=11 /product="RNA binding protein" /protein_id="YP_003918599.1" /db_xref="GI:308171894" /db_xref="GeneID:9778700" /translation="MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVTVNNE PDNRRGRKLYVGDVVAIEGFGSFQVVN" misc_feature 3223..3399 /gene="yaaA" /locus_tag="BAMF_0003" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cl09940" /db_xref="CDD:186878" gene 3445..4557 /gene="recF" /locus_tag="BAMF_0004" /db_xref="GeneID:9780435" CDS 3445..4557 /gene="recF" /locus_tag="BAMF_0004" /function="16.6: Maintain16.9: Replicate" /codon_start=1 /transl_table=11 /product="DNA repair and genetic recombination factor" /protein_id="YP_003918600.1" /db_xref="GI:308171895" /db_xref="GeneID:9780435" /translation="MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIY VLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGDIPMQLVISKKGKKGKVNHIEQQ KLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGL EELTLKYHTALDVSDPKDLSKIGNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNG RDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTI QGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK" misc_feature 3445..4551 /gene="recF" /locus_tag="BAMF_0004" /note="recombination protein F; Reviewed; Region: recF; PRK00064" /db_xref="CDD:178835" misc_feature 3451..>3939 /gene="recF" /locus_tag="BAMF_0004" /note="RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication...; Region: ABC_RecF; cd03242" /db_xref="CDD:73001" misc_feature 3532..3555 /gene="recF" /locus_tag="BAMF_0004" /note="Walker A/P-loop; other site" /db_xref="CDD:73001" misc_feature order(3541..3546,3550..3558,3745..3747) /gene="recF" /locus_tag="BAMF_0004" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73001" misc_feature 3736..3747 /gene="recF" /locus_tag="BAMF_0004" /note="Q-loop/lid; other site" /db_xref="CDD:73001" misc_feature <4213..4548 /gene="recF" /locus_tag="BAMF_0004" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 4291..4320 /gene="recF" /locus_tag="BAMF_0004" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 4378..4395 /gene="recF" /locus_tag="BAMF_0004" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 4402..4413 /gene="recF" /locus_tag="BAMF_0004" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 4468..4488 /gene="recF" /locus_tag="BAMF_0004" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene 4575..4820 /gene="remB" /locus_tag="BAMF_0005" /db_xref="GeneID:9779907" CDS 4575..4820 /gene="remB" /locus_tag="BAMF_0005" /note="Uncharacterized protein yaaB" /codon_start=1 /transl_table=11 /product="regulator of the extracellular matrix" /protein_id="YP_003918601.1" /db_xref="GI:308171896" /db_xref="GeneID:9779907" /translation="MYIHLGDDFVVSTRDIVGIFDCKVNVSPIVEEFLDRQKEKVVPS VNGTPKSIVVTTENIYYSPLSSGTLKKRAQFMLEIDS" gene 4871..6793 /gene="gyrB" /locus_tag="BAMF_0006" /db_xref="GeneID:9779917" CDS 4871..6793 /gene="gyrB" /locus_tag="BAMF_0006" /EC_number="5.99.1.3" /function="16.9: Replicate16.3: Control16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit B" /protein_id="YP_003918602.1" /db_xref="GI:308171897" /db_xref="GeneID:9779917" /translation="MAMEQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLV WEIVDNSIDEALAGYCTDINIEIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVIMTVL HAGGKFDGSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEV IGDTDKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQER KNEYHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFT NNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHP DPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAK KARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAIL PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDG AHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQLDELLKELPQ SPKPGLQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEMLMGDKVEPR RNFIEANARYVKNLDI" misc_feature 4877..6790 /gene="gyrB" /locus_tag="BAMF_0006" /note="DNA gyrase subunit B; Validated; Region: gyrB; PRK05644" /db_xref="CDD:180181" misc_feature 4988..5287 /gene="gyrB" /locus_tag="BAMF_0006" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(5006..5008,5018..5020,5027..5029,5093..5095, 5099..5101,5105..5107,5111..5116,5231..5242) /gene="gyrB" /locus_tag="BAMF_0006" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 5018..5020 /gene="gyrB" /locus_tag="BAMF_0006" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(5105..5107,5111..5113,5231..5233,5237..5239) /gene="gyrB" /locus_tag="BAMF_0006" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 5546..6016 /gene="gyrB" /locus_tag="BAMF_0006" /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are...; Region: TopoII_Trans_DNA_gyrase; cd00822" /db_xref="CDD:48467" misc_feature 5699..5701 /gene="gyrB" /locus_tag="BAMF_0006" /note="anchoring element; other site" /db_xref="CDD:48467" misc_feature order(5873..5875,5882..5887,5891..5893) /gene="gyrB" /locus_tag="BAMF_0006" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48467" misc_feature order(5891..5893,5897..5899) /gene="gyrB" /locus_tag="BAMF_0006" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48467" misc_feature 6140..6481 /gene="gyrB" /locus_tag="BAMF_0006" /note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of...; Region: TOPRIM_TopoIIA_GyrB; cd03366" /db_xref="CDD:173786" misc_feature order(6158..6163,6170..6172,6377..6379,6383..6385, 6389..6391) /gene="gyrB" /locus_tag="BAMF_0006" /note="active site" /db_xref="CDD:173786" misc_feature order(6158..6160,6377..6379) /gene="gyrB" /locus_tag="BAMF_0006" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173786" misc_feature 6569..6757 /gene="gyrB" /locus_tag="BAMF_0006" /note="DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986" /db_xref="CDD:189792" gene 7010..9469 /gene="gyrA" /locus_tag="BAMF_0007" /db_xref="GeneID:9778985" CDS 7010..9469 /gene="gyrA" /locus_tag="BAMF_0007" /EC_number="5.99.1.3" /function="16.9: Replicate16.3: Control16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit A" /protein_id="YP_003918603.1" /db_xref="GI:308171898" /db_xref="GeneID:9778985" /translation="MSEQNTPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKP VHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYM LVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVM PSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDF PTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEK IADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTALQTSFGINL LALVDGQPKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDA VISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVAL IAELKDILANEERVLEIIREELNEIKERFNDERRTEIVTSGLETIEDEDLIERENIVI TLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKV YRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVSTFDEELYLFFTTKQGVSKR TALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMG RTAAGVKGITLTDDDVVVGMEILEEDSHVLIVTENGYGKRTPASEYRVQSRGGKGLKT CKITDSNGPLVTVKATRGEEDLMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQE HVATVALVEKNEEEPEETEEV" misc_feature 7031..9427 /gene="gyrA" /locus_tag="BAMF_0007" /note="DNA gyrase subunit A; Validated; Region: PRK05560" /db_xref="CDD:180128" misc_feature 7100..8386 /gene="gyrA" /locus_tag="BAMF_0007" /note="DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in...; Region: TOP4c; cd00187" /db_xref="CDD:29149" misc_feature order(7100..7183,7196..7345,7349..7405,7409..7480, 7487..7489) /gene="gyrA" /locus_tag="BAMF_0007" /note="CAP-like domain; other site" /db_xref="CDD:29149" misc_feature 7376..7378 /gene="gyrA" /locus_tag="BAMF_0007" /note="Active site [active]" /db_xref="CDD:29149" misc_feature order(8171..8179,8186..8197,8219..8224,8273..8323) /gene="gyrA" /locus_tag="BAMF_0007" /note="primary dimer interface [polypeptide binding]; other site" /db_xref="CDD:29149" misc_feature 8528..8665 /gene="gyrA" /locus_tag="BAMF_0007" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature 8672..8824 /gene="gyrA" /locus_tag="BAMF_0007" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature 8843..8977 /gene="gyrA" /locus_tag="BAMF_0007" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature 8984..9121 /gene="gyrA" /locus_tag="BAMF_0007" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature 9137..9280 /gene="gyrA" /locus_tag="BAMF_0007" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature 9287..9427 /gene="gyrA" /locus_tag="BAMF_0007" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" gene 9773..11310 /locus_tag="BAMF__r01" /db_xref="GeneID:9778984" rRNA 9773..11310 /locus_tag="BAMF__r01" /product="16S ribosomal RNA" /db_xref="GeneID:9778984" gene 11416..11492 /locus_tag="BAMF__t01" /db_xref="GeneID:9778144" tRNA 11416..11492 /locus_tag="BAMF__t01" /product="tRNA-Ile" /anticodon=(pos:11450..11452,aa:Ile) /codon_recognized="AUC" /db_xref="GeneID:9778144" gene 11507..11582 /locus_tag="BAMF__t02" /db_xref="GeneID:9778174" tRNA 11507..11582 /locus_tag="BAMF__t02" /product="tRNA-Ala" /anticodon=(pos:11540..11542,aa:Ala) /codon_recognized="GCA" /db_xref="GeneID:9778174" gene 11666..14593 /locus_tag="BAMF__r02" /db_xref="GeneID:9778175" rRNA 11666..14593 /locus_tag="BAMF__r02" /product="23S ribosomal RNA" /db_xref="GeneID:9778175" gene 14647..14761 /locus_tag="BAMF__r03" /db_xref="GeneID:9778145" rRNA 14647..14761 /locus_tag="BAMF__r03" /product="5S ribosomal RNA" /db_xref="GeneID:9778145" gene complement(14807..15757) /gene="yaaC" /locus_tag="BAMF_0008" /db_xref="GeneID:9778146" CDS complement(14807..15757) /gene="yaaC" /locus_tag="BAMF_0008" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918604.1" /db_xref="GI:308171899" /db_xref="GeneID:9778146" /translation="MRDLEWKELSLFYSVESSQKFLNKVYTERGMEEPKRYAFKNSER FIFFIKHAESFYKQASLSPLEIKPILLFYGMSQLLKACLLTTDPSYPSHASVLAHGVT ARKRKKQNYSFRDDEVKVQRNGLCIHVMKHLFGIAGLEEERYTMKKLLTAIPELHAVF HFQEKKNWLTKVELKDNLISVPEHAVIHYNMSDTRFAEYISHHLNWSFVRKDHKNLVF EAAPIDREPWSSPNLLFHLENNQYYIPSQRDHFLHLPEMIIHYLVLYNVGMIARYETE WWYELLTQHVSDDYVMIRRFLEVTERKFPYYASNFLKQYL" gene 15878..17344 /gene="guaB" /locus_tag="BAMF_0009" /db_xref="GeneID:9780436" CDS 15878..17344 /gene="guaB" /locus_tag="BAMF_0009" /EC_number="1.1.1.205" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="inosine-monophosphate dehydrogenase" /protein_id="YP_003918605.1" /db_xref="GI:308171900" /db_xref="GeneID:9780436" /translation="MWESKFSKEGLTFDDVLLVPAQSDVLPRDVDLSVELTKTLKLNI PVISAGMDTVTESAMAIAMARQGGLGIIHKNMSIEQQAEHVDKVKRSERGVITNPFFL TPDHQVFDAEHLMGKYRISGVPIVDNKDDQKLVGIITNRDLRFISDYSMKISDVMTKE ELVTAPVGTTLDEAEKILQKHKIEKLPLVDDQNKLKGLITIKDIEKVIEFPNSSKDEH GRLIVGAAVGVTGDTMTRVSKLVEANVDVIVVDTAHGHSRGVLNTVAKIRETYPELNI IAGNVATAEATKALIEAGANIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKH GATIIADGGIKFSGDITKALASGGHAVMLGSLLAGTSESPGETEIYQGRRFKVYRGMG SVAAMEKGSKDRYFQEENKKFVPEGIEGRTPYKGPVEETVYQLVGGLRSGMGYCGSKD LRALREEAQFIRMTGAGLRESHPHDVQITKESPNYTIS" misc_feature 15884..17341 /gene="guaB" /locus_tag="BAMF_0009" /note="inosine 5'-monophosphate dehydrogenase; Reviewed; Region: PRK05567" /db_xref="CDD:180134" misc_feature 15905..>16144 /gene="guaB" /locus_tag="BAMF_0009" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature 16163..16495 /gene="guaB" /locus_tag="BAMF_0009" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key...; Region: CBS_pair_IMPDH; cd04601" /db_xref="CDD:73101" misc_feature <16532..17266 /gene="guaB" /locus_tag="BAMF_0009" /note="IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the...; Region: IMPDH; cd00381" /db_xref="CDD:73364" misc_feature order(16793..16801,16898..16900,16904..16906,16967..16972, 17039..17041,17045..17053,17123..17128) /gene="guaB" /locus_tag="BAMF_0009" /note="active site" /db_xref="CDD:73364" gene 17497..18828 /gene="dacA" /locus_tag="BAMF_0010" /db_xref="GeneID:9778976" CDS 17497..18828 /gene="dacA" /locus_tag="BAMF_0010" /EC_number="3.4.16.4" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase" /protein_id="YP_003918606.1" /db_xref="GI:308171901" /db_xref="GeneID:9778976" /translation="MNITKWKQMLVSLVVLALTATCFVPMSKAEAAGNDPIDVNASAA IMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVYEI SQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILAGTETKFVAKMNAKAK ELGMTNYDFKNSTGLVNEDLHGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKT TSIAKTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNG MRVITVVLNAKGNLHTGRFDETKKMLDYAFNSNFSMKDLYPEGSQVKGHKTIDVDKGK DKQVDIVTDKALSIPVKSGDEKNYKAEVTLDKKEITAPVKKGTKVGTLTVTYKGSDKD YGFLKSKEFSVNLVTKNDVDKANWFVQMMRGIGGFFSGIWNSAVDTVTGWF" misc_feature 17566..18825 /gene="dacA" /locus_tag="BAMF_0010" /note="D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: DacC; COG1686" /db_xref="CDD:31872" misc_feature 17581..18360 /gene="dacA" /locus_tag="BAMF_0010" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" misc_feature 18424..>18612 /gene="dacA" /locus_tag="BAMF_0010" /note="Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; pfam07943" /db_xref="CDD:191901" gene 19026..19910 /gene="pdxS" /locus_tag="BAMF_0011" /db_xref="GeneID:9778634" CDS 19026..19910 /gene="pdxS" /locus_tag="BAMF_0011" /EC_number="1.1.1.262" /function="Pyridoxine biosynthesis enzyme" /note="Pyridoxal biosynthesis lyase pdxS;, Vitamin B6 biosynthesis protein, SOR/SNZ family, TIGR00343: pyridoxine biosynthesis protein" /codon_start=1 /transl_table=11 /product="pyridoxine biosynthesis protein" /protein_id="YP_003918607.1" /db_xref="GI:308171902" /db_xref="GeneID:9778634" /translation="MAQTGTDRVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMA LERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYID ESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEA VRHMRKVNAQVRKVVAMSNDELMTEAKNLGAPYELLLQIKRDGKLPVVNFAAGGVATP ADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHYTDYKLIAELSKELGTAMK GIEISNLLPEQRMQERGW" misc_feature 19032..19907 /gene="pdxS" /locus_tag="BAMF_0011" /note="pyridoxal biosynthesis lyase PdxS; Provisional; Region: PRK04180" /db_xref="CDD:179769" misc_feature 19056..19904 /gene="pdxS" /locus_tag="BAMF_0011" /note="PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some...; Region: pdxS; cd04727" /db_xref="CDD:73389" misc_feature order(19095..19097,19152..19154,19266..19268,19482..19490, 19665..19667,19722..19724) /gene="pdxS" /locus_tag="BAMF_0011" /note="active site" /db_xref="CDD:73389" misc_feature order(19197..19199,19203..19205,19227..19229,19272..19274, 19281..19289,19296..19298,19347..19361,19485..19493, 19497..19499,19506..19511,19518..19520,19671..19673, 19680..19685,19806..19808) /gene="pdxS" /locus_tag="BAMF_0011" /note="multimer interface [polypeptide binding]; other site" /db_xref="CDD:73389" gene 19932..20522 /gene="pdxT" /locus_tag="BAMF_0012" /db_xref="GeneID:9779475" CDS 19932..20522 /gene="pdxT" /locus_tag="BAMF_0012" /EC_number="6.3.5.2" /function="Predicted glutamine amidotransferase involved in pyridoxine biosynthesis" /note="Glutamine amidotransferase subunit pdxT; Glutamine amidotransferase glutaminase subunit pdxT;, SNO glutamine amidotransferase, SNO glutamine amidotransferase family" /codon_start=1 /transl_table=11 /product="glutamine amidotransferase" /protein_id="YP_003918608.1" /db_xref="GI:308171903" /db_xref="GeneID:9779475" /translation="MLTIGVLGLQGAVREHIRSIEACGSKGVVIKRPEQLNDIDGLIL PGGESTTMRRLMDTYHFMEPLREFAAQGKPMFGTCAGLIILAKEIAGTDNAHLGLLNV VVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGEDVEVLCEHNGRIVAAK QGHFLGCSFHPELTDDHRVTELFVKMAEKHKQETAV" misc_feature 19941..20483 /gene="pdxT" /locus_tag="BAMF_0012" /note="Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis; Region: GATase1_PB; cd01749" /db_xref="CDD:153220" misc_feature order(20067..20075,20166..20168,20247..20249,20331..20336, 20439..20441,20445..20447) /gene="pdxT" /locus_tag="BAMF_0012" /note="predicted active site [active]" /db_xref="CDD:153220" misc_feature order(20166..20168,20439..20441,20445..20447) /gene="pdxT" /locus_tag="BAMF_0012" /note="catalytic triad [active]" /db_xref="CDD:153220" gene 20842..22119 /gene="serS" /locus_tag="BAMF_0013" /db_xref="GeneID:9779476" CDS 20842..22119 /gene="serS" /locus_tag="BAMF_0013" /EC_number="6.1.1.11" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="seryl-tRNA synthetase" /protein_id="YP_003918609.1" /db_xref="GI:308171904" /db_xref="GeneID:9779476" /translation="MIDTKVLRANFQEVKAKLIPKGEDLSDFDKFEELDEKRRELIGK VEELKGKRNEVSQQVAVLKREKKDADHIIKEMREVGEEIKKLDEELRTVETTLETILL SIPNIPHDSVPVGETEDDNIEIRKWGEAPAFSYEPKPHWDIADHLNILDFERASKVTG SRFVFYKGLGARLERALYNFMLDLHVDEYHYTEVIPPYMVNRTSMTGTGQLPKFEEDA FKIREEDYFLIPTAEVPITNMHRDEILSDDALPINYAAFSACFRSEAGSAGRDTRGLI RQHQFNKVELVKFVKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKK YDIEVWIPSQDTYREISSCSNFEAFQARRANIRFRREAKGKPEHVHTLNGSGLAVGRT VAAILENYQQEDGSVVIPEVLRPYMGNKEVIKP" misc_feature 20842..22116 /gene="serS" /locus_tag="BAMF_0013" /note="seryl-tRNA synthetase; Provisional; Region: PRK05431" /db_xref="CDD:180077" misc_feature 20842..21165 /gene="serS" /locus_tag="BAMF_0013" /note="Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403" /db_xref="CDD:145510" misc_feature 21199..22092 /gene="serS" /locus_tag="BAMF_0013" /note="Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770" /db_xref="CDD:29815" misc_feature order(21301..21318,21325..21345,21355..21357,21361..21363, 21367..21369,21376..21378,21415..21426,21430..21438, 21442..21444,21496..21501,21505..21507,21517..21519, 21544..21546,21556..21558,21568..21570,21616..21618, 21679..21681,22087..22092) /gene="serS" /locus_tag="BAMF_0013" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29815" misc_feature order(21322..21324,21532..21534,21538..21540,21625..21627, 21631..21633,21649..21651,21658..21660,21667..21669, 21673..21675,21682..21684,21688..21690,21694..21696, 21886..21897,21988..21990,21994..21996,22012..22014) /gene="serS" /locus_tag="BAMF_0013" /note="active site" /db_xref="CDD:29815" misc_feature 21415..21438 /gene="serS" /locus_tag="BAMF_0013" /note="motif 1; other site" /db_xref="CDD:29815" misc_feature 21622..21633 /gene="serS" /locus_tag="BAMF_0013" /note="motif 2; other site" /db_xref="CDD:29815" misc_feature order(21997..22005,22012..22014) /gene="serS" /locus_tag="BAMF_0013" /note="motif 3; other site" /db_xref="CDD:29815" gene complement(22130..23275) /gene="glxK" /locus_tag="BAMF_0014" /db_xref="GeneID:9780081" CDS complement(22130..23275) /gene="glxK" /locus_tag="BAMF_0014" /EC_number="2.7.1.31" /note="Glycerate kinase;, Glycerate kinase, Glycerate kinase family, TIGR00045: glycerate kinase" /codon_start=1 /transl_table=11 /product="Glycerate kinase" /protein_id="YP_003918610.1" /db_xref="GI:308171905" /db_xref="GeneID:9780081" /translation="MKVIIAPDSFKESMTSKEAADSIEKGFKAVFPDAEYIKIPVADG GEGTVQALTDATGGSIIKKTVTGPLGTPVIAAYGLLGDGRTAVIEMAEASGLHLVPRH LRDPLNTTTRGTGELIADAASRGASEIIIGLGGSATNDAGTGMASALGVRFLNEEGQE IPDGGGSLHTLASIDISGLSPDLKHIRIRAACDVENPLTGENGASYVFGPQKGASEET KMVLDSNLRHFADVLRRQHDIEADSVKGAGAAGGLGAGLIAFLQAELQRGIDVVLDTL SFSDQIKGADLVITGEGQIDGQTIFGKTPAGIAARASAQEIPVIALAGSLGKDFEHVY NRGITAVFSIVPGAVSLEDALESGRFNLESTARNVAALYQTAKKARL" misc_feature complement(22154..23272) /gene="glxK" /locus_tag="BAMF_0014" /note="Glycerate kinase family; Region: Gly_kinase; cl00841" /db_xref="CDD:186217" gene 23494..23586 /locus_tag="BAMF__t03" /db_xref="GeneID:9778933" tRNA 23494..23586 /locus_tag="BAMF__t03" /product="tRNA-Ser" /anticodon=(pos:23530..23532,aa:Ser) /codon_recognized="UCA" /db_xref="GeneID:9778933" gene complement(23715..24368) /gene="dck" /locus_tag="BAMF_0015" /db_xref="GeneID:9778176" CDS complement(23715..24368) /gene="dck" /locus_tag="BAMF_0015" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="deoxyadenosine/deoxycytidine kinase" /protein_id="YP_003918611.1" /db_xref="GI:308171906" /db_xref="GeneID:9778176" /translation="MKDIHIPNNAIITVAGTVGVGKSTLTKALAKRLGFNTSLEEVDE NPYLEKFYHDFERWSFHLQIYFLAERFKEQKNMFESGGGFVQDRSIYEDTGIFAKMHA DKGTMSLTDYKTYTSLFEAMVMTPYFPHPDVLIYLEGDLENIIERIEKRGREMELQTN RAYWEEMYTRYEDWISGFNACPVLKVRIEDYDLEADEQSLEPLIEKISHVINENRKK" misc_feature complement(23718..24353) /gene="dck" /locus_tag="BAMF_0015" /note="Deoxynucleoside kinases [Nucleotide transport and metabolism]; Region: COG1428" /db_xref="CDD:31617" misc_feature complement(23778..24338) /gene="dck" /locus_tag="BAMF_0015" /note="Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7...; Region: dNK; cd01673" /db_xref="CDD:30191" misc_feature complement(order(23901..23903,23916..23918,24078..24080, 24180..24185,24213..24215,24300..24305,24309..24311)) /gene="dck" /locus_tag="BAMF_0015" /note="Substrate-binding site [chemical binding]; other site" /db_xref="CDD:30191" misc_feature complement(24159..24161) /gene="dck" /locus_tag="BAMF_0015" /note="Substrate specificity [chemical binding]; other site" /db_xref="CDD:30191" gene complement(24365..24988) /gene="dgk" /locus_tag="BAMF_0016" /db_xref="GeneID:9778645" CDS complement(24365..24988) /gene="dgk" /locus_tag="BAMF_0016" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="deoxyguanosine kinase" /protein_id="YP_003918612.1" /db_xref="GI:308171907" /db_xref="GeneID:9778645" /translation="MNRAPFIAVEGPIGAGKTTLASMLSEELGFPMINEIVEDNPYLD KFYDNIEEWSFQLEMFFLCHRYKQLEDTDRDYLKQGQPVLSDYHIYKNVIFAERTLHG QKLEKYKQIYHLLTHDLPKPNVIVYIKASLPTLLQRIEKRGRPFEKNIEHQYLERLIA DYDTAIRQLQEEDPDISVLTIDGDTEDFVLNKTDYERIARQVKELIK" misc_feature complement(24368..24988) /gene="dgk" /locus_tag="BAMF_0016" /note="Deoxynucleoside kinases [Nucleotide transport and metabolism]; Region: COG1428" /db_xref="CDD:31617" misc_feature complement(24413..24973) /gene="dgk" /locus_tag="BAMF_0016" /note="Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7...; Region: dNK; cd01673" /db_xref="CDD:30191" misc_feature complement(order(24548..24550,24563..24565,24701..24703, 24815..24820,24848..24850,24935..24940,24944..24946)) /gene="dgk" /locus_tag="BAMF_0016" /note="Substrate-binding site [chemical binding]; other site" /db_xref="CDD:30191" misc_feature complement(24794..24796) /gene="dgk" /locus_tag="BAMF_0016" /note="Substrate specificity [chemical binding]; other site" /db_xref="CDD:30191" gene complement(25085..26365) /gene="yaaH" /locus_tag="BAMF_0017" /db_xref="GeneID:9778667" CDS complement(25085..26365) /gene="yaaH" /locus_tag="BAMF_0017" /function="16.13: Shape16.8: Protect" /codon_start=1 /transl_table=11 /product="spore peptidoglycan hydrolase" /protein_id="YP_003918613.1" /db_xref="GI:308171908" /db_xref="GeneID:9778667" /translation="MKRGDTLSAIAARYRIAANVIAEANKLPNPNTLVVGQTLVIPIE GQYYEVRQGDTLAAIAGRFHISAAELARVNGIQLSSTVQVGTRLYIPEQTNKPDIESN AYIEPRGTSVSANLQQAAREASPYLTYLGAFSFQVQRNGTLKEPPLTNLKSIADRHNT TLMMIITNLENDAFSDELGRLILNDNTVKTKLFQEIVSTAKKHGFRDIHFDFEYLRPQ DREAYNRFLREARTIFHREGWKISTALAPKTSATQAGKWYEAHDYRAHGEIVDFVVIM TYEWGYSGGPAQAVSPIGPVRNVIEYALTEMPSSKIVMGQNMYGYDWTLPFKQGTTAK AVSPQQAIALAARYKVDIQYNETAQAPFFRYTAENQKQHEVWFEDARSIQAKFNLIKE LHLRGISYWKLGLSFPQNWLLLGDQFHIVKETFR" misc_feature complement(25112..26362) /gene="yaaH" /locus_tag="BAMF_0017" /note="Predicted glycosyl hydrolase [General function prediction only]; Region: COG3858" /db_xref="CDD:33648" misc_feature complement(26240..26362) /gene="yaaH" /locus_tag="BAMF_0017" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature complement(order(26327..26329,26336..26338,26351..26353, 26360..26362)) /gene="yaaH" /locus_tag="BAMF_0017" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" misc_feature complement(26093..26230) /gene="yaaH" /locus_tag="BAMF_0017" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature complement(order(26180..26182,26189..26191,26204..26206, 26213..26215,26222..26224)) /gene="yaaH" /locus_tag="BAMF_0017" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" misc_feature complement(25124..26071) /gene="yaaH" /locus_tag="BAMF_0017" /note="Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the...; Region: GH18_CFLE_spore_hydrolase; cd02874" /db_xref="CDD:119353" misc_feature complement(order(25163..25165,25409..25411,25529..25534, 25538..25540,25727..25729,25733..25735,25739..25741, 25844..25846,25964..25969,26057..26059)) /gene="yaaH" /locus_tag="BAMF_0017" /note="active site" /db_xref="CDD:119353" gene complement(26440..26991) /gene="yaaI" /locus_tag="BAMF_0018" /db_xref="GeneID:9780437" CDS complement(26440..26991) /gene="yaaI" /locus_tag="BAMF_0018" /EC_number="3.3.2.1" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="isochorismatase" /protein_id="YP_003918614.1" /db_xref="GI:308171909" /db_xref="GeneID:9780437" /translation="MTEPNNTALLIVDMINNFQFDMGERLAEKTKQIVPRILSLKKHA KQNNWPIIYINDHYGLWKADIDAIREECSNDISADIIEDISPQPDDYFLIKPKHSAFY ETALHTLLTELKVNQLMITGIAGNICVLFTANDAYMREYSIAIPKDCTASNNDEDNDF ALTMMENVLFAEITTEKQITSEK" misc_feature complement(26467..26973) /gene="yaaI" /locus_tag="BAMF_0018" /note="Isochorismatase family; Region: Isochorismatase; pfam00857" /db_xref="CDD:189743" misc_feature complement(26494..26970) /gene="yaaI" /locus_tag="BAMF_0018" /note="Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cd00431" /db_xref="CDD:29548" misc_feature complement(order(26608..26610,26707..26709,26953..26955)) /gene="yaaI" /locus_tag="BAMF_0018" /note="catalytic triad [active]" /db_xref="CDD:29548" misc_feature complement(26620..26625) /gene="yaaI" /locus_tag="BAMF_0018" /note="conserved cis-peptide bond; other site" /db_xref="CDD:29548" gene 27074..27556 /gene="tadA" /locus_tag="BAMF_0019" /db_xref="GeneID:9780438" CDS 27074..27556 /gene="tadA" /locus_tag="BAMF_0019" /EC_number="3.5.-.-" /codon_start=1 /transl_table=11 /product="tRNA specific adenosine deaminase" /protein_id="YP_003918615.1" /db_xref="GI:308171910" /db_xref="GeneID:9780438" /translation="MNDEYYMREAIKEAKKAEAKGEVPIGAVLVLHDEIVARAHNLRE TEQRSLAHAEMLAIDEACRKLGTWRLEDAVLYVTLEPCPMCAGAVVLSRVDKVVFGAF DPKGGCTGTLMNLLQEERFNHQAEVVSGVLEEECGEMLSAFFRKLRRQKKDKRKKLSD " misc_feature 27140..27415 /gene="tadA" /locus_tag="BAMF_0019" /note="Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285" /db_xref="CDD:29828" misc_feature order(27146..27148,27194..27196,27227..27235,27317..27319, 27326..27328) /gene="tadA" /locus_tag="BAMF_0019" /note="nucleoside/Zn binding site; other site" /db_xref="CDD:29828" misc_feature order(27221..27223,27236..27238,27248..27250,27320..27325, 27332..27337,27344..27349) /gene="tadA" /locus_tag="BAMF_0019" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29828" misc_feature order(27227..27235,27314..27319,27326..27328) /gene="tadA" /locus_tag="BAMF_0019" /note="catalytic motif [active]" /db_xref="CDD:29828" gene 28039..29730 /gene="dnaX" /locus_tag="BAMF_0020" /db_xref="GeneID:9780246" CDS 28039..29730 /gene="dnaX" /locus_tag="BAMF_0020" /EC_number="2.7.7.7" /function="16.9: Replicate" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunits gamma and tau" /protein_id="YP_003918616.1" /db_xref="GI:308171911" /db_xref="GeneID:9780246" /translation="MGYQALYRVFRPQQFEDVVGQEHITKTLQNALLQKKFSHAYLFS GPRGTGKTSAAKIFAKAVNCEHAPVEEPCNECAACKGITNGSISDVIEIDAASNNGVD EIRDIRDKVKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPH KIPLTIISRCQRFDFKRITSQAIVGRMKIIVDAEQLKVEEGALDIIASAADGGMRDAL SLLDQAVSFSGDELAVDDALLITGAVSQHYIGKLASALHRKQVSEALETLNELLQQGK DAAKLIEDMIFYFRDMLLYQAAPDLEGVLEKVKVDEMFRDLSGEIPAPALYEMIDILN KSHQEMKWTNHPRIFFEVAVVKICQTAQQSGADIPEVGMLMNKIQQLEQEVERLKTSG VKVQAESAPKEAPRPQKGGKSHYKAPVGRIHEILKEATRPDLEQLKSSWGKLLAHLKQ QNKVSHAALLNDSEPVAAAQKAFVLKFKYEIHCKMVAEDNNGVRTNLEQILESMLGKR MDLIGVPEAQWGKIREEFLNDHQQESEGSNEPAEEDPLIAEAKKLVGADLIEIKD" misc_feature 28039..29727 /gene="dnaX" /locus_tag="BAMF_0020" /note="DNA polymerase III subunits gamma and tau; Validated; Region: PRK05563" /db_xref="CDD:180131" misc_feature 28093..28554 /gene="dnaX" /locus_tag="BAMF_0020" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 28171..28194 /gene="dnaX" /locus_tag="BAMF_0020" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(28174..28197,28414..28416,28507..28509) /gene="dnaX" /locus_tag="BAMF_0020" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 28402..28419 /gene="dnaX" /locus_tag="BAMF_0020" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 28543..28545 /gene="dnaX" /locus_tag="BAMF_0020" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 28762..29172 /gene="dnaX" /locus_tag="BAMF_0020" /note="DNA polymerase III subunits gamma and tau domain III; Region: DNA_pol3_gamma3; pfam12169" /db_xref="CDD:152604" gene 29755..30078 /gene="yaaK" /locus_tag="BAMF_0021" /db_xref="GeneID:9778701" CDS 29755..30078 /gene="yaaK" /locus_tag="BAMF_0021" /function="16.3: Control16.9: Replicate" /codon_start=1 /transl_table=11 /product="DNA binding protein" /protein_id="YP_003918617.1" /db_xref="GI:308171912" /db_xref="GeneID:9778701" /translation="MRGGMGNMQKMMKQMQKMQKDMAKAQEELAEKVLEGTAGGGMVT VKVNGQKEVVDVAIKEEVVDPEDIEMLQDLVLAATNDALKKVDDMTNETMGQFTKGMN IPGLF" misc_feature <29833..30075 /gene="yaaK" /locus_tag="BAMF_0021" /note="Uncharacterised BCR, YbaB family COG0718; Region: DUF149; cl00494" /db_xref="CDD:186034" gene 30093..30689 /gene="recR" /locus_tag="BAMF_0022" /db_xref="GeneID:9780439" CDS 30093..30689 /gene="recR" /locus_tag="BAMF_0022" /function="16.6: Maintain" /codon_start=1 /transl_table=11 /product="DNA repair and recombination protein" /protein_id="YP_003918618.1" /db_xref="GI:308171913" /db_xref="GeneID:9780439" /translation="MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDTVLDFA KALVNAKRNLTYCSICGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNG QYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL" misc_feature 30096..30686 /gene="recR" /locus_tag="BAMF_0022" /note="recombination protein RecR; Reviewed; Region: recR; PRK00076" /db_xref="CDD:178844" misc_feature 30210..30326 /gene="recR" /locus_tag="BAMF_0022" /note="RecR protein; Region: RecR; pfam02132" /db_xref="CDD:145340" misc_feature 30330..30665 /gene="recR" /locus_tag="BAMF_0022" /note="TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a...; Region: TOPRIM_recR; cd01025" /db_xref="CDD:173775" misc_feature order(30348..30353,30360..30362,30522..30524,30528..30530, 30534..30536) /gene="recR" /locus_tag="BAMF_0022" /note="putative active site [active]" /db_xref="CDD:173775" misc_feature order(30348..30350,30522..30524) /gene="recR" /locus_tag="BAMF_0022" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173775" misc_feature order(30366..30374,30378..30383,30504..30506,30510..30512, 30516..30518,30525..30527,30561..30563,30591..30626, 30630..30632,30645..30647,30651..30653,30657..30665) /gene="recR" /locus_tag="BAMF_0022" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:173775" gene 30708..30932 /gene="yaaL" /locus_tag="BAMF_0023" /db_xref="GeneID:9779913" CDS 30708..30932 /gene="yaaL" /locus_tag="BAMF_0023" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918619.1" /db_xref="GI:308171914" /db_xref="GeneID:9779913" /translation="MGFLRRNTLRKEFDEKLIEQLFKQKEEWNRQKSLVDKSLEPSAE VLFELKVAESKYFFYLKEAKQRNLKMSRWK" misc_feature 30708..30920 /gene="yaaL" /locus_tag="BAMF_0023" /note="Protein of unknown function (DUF2508); Region: DUF2508; pfam10704" /db_xref="CDD:151198" gene 30993..31256 /gene="bofA" /locus_tag="BAMF_0024" /db_xref="GeneID:9780440" CDS 30993..31256 /gene="bofA" /locus_tag="BAMF_0024" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="inhibitor of the pro-sigma(K) processing machinery" /protein_id="YP_003918620.1" /db_xref="GI:308171915" /db_xref="GeneID:9780440" /translation="MEPFFIIGLIVGLVALLFLWGVSPKPVRWIGLTAIKFIAGAILL VGVNLFGGSLGIHIPVNLVTTGVSGILGIPGIAALIVIKRFII" misc_feature 31050..>31196 /gene="bofA" /locus_tag="BAMF_0024" /note="SigmaK-factor processing regulatory protein BofA; Region: BofA; cl06466" /db_xref="CDD:164085" gene 31513..33050 /locus_tag="BAMF__r04" /db_xref="GeneID:9778450" rRNA 31513..33050 /locus_tag="BAMF__r04" /product="16S ribosomal RNA" /db_xref="GeneID:9778450" gene 33156..33232 /locus_tag="BAMF__t04" /db_xref="GeneID:9778147" tRNA 33156..33232 /locus_tag="BAMF__t04" /product="tRNA-Ile" /anticodon=(pos:33190..33192,aa:Ile) /codon_recognized="AUC" /db_xref="GeneID:9778147" gene 33247..33322 /locus_tag="BAMF__t05" /db_xref="GeneID:9778177" tRNA 33247..33322 /locus_tag="BAMF__t05" /product="tRNA-Ala" /anticodon=(pos:33280..33282,aa:Ala) /codon_recognized="GCA" /db_xref="GeneID:9778177" gene 33406..36333 /locus_tag="BAMF__r05" /db_xref="GeneID:9778178" rRNA 33406..36333 /locus_tag="BAMF__r05" /product="23S ribosomal RNA" /db_xref="GeneID:9778178" gene 36387..36501 /locus_tag="BAMF__r06" /db_xref="GeneID:9778148" rRNA 36387..36501 /locus_tag="BAMF__r06" /product="5S ribosomal RNA" /db_xref="GeneID:9778148" gene 37020..37634 /gene="xpaC" /locus_tag="BAMF_0025" /db_xref="GeneID:9778149" CDS 37020..37634 /gene="xpaC" /locus_tag="BAMF_0025" /function="16.11: Scavenge (Catabolism)16.3: Control" /codon_start=1 /transl_table=11 /product="phosphatase" /protein_id="YP_003918621.1" /db_xref="GI:308171916" /db_xref="GeneID:9778149" /translation="MKPFIQYMKWTLCGSAVFVLAGIAVFTIGHQPFLYSLLYGAAGG AAVGAAGLWNAKRLFLKKHRLTRKEYAYIKENLEEARDKIIRLRRALFRSRSIQMLKQ NAEILRITRRIYVLTKQEPKRFYQAERFYYQTLDSVAELTEKYVLLSSQPRKNKDLSM SLSETRMTLAELSRRLEEDLHELMKEDIDDLHFELDMAKHSLRK" misc_feature 37020..37616 /gene="xpaC" /locus_tag="BAMF_0025" /note="5-bromo-4-chloroindolyl phosphate hydrolysis protein; Region: Halogen_Hydrol; cl02059" /db_xref="CDD:154729" gene 37650..38765 /gene="yaaN" /locus_tag="BAMF_0026" /db_xref="GeneID:9780420" CDS 37650..38765 /gene="yaaN" /locus_tag="BAMF_0026" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918622.1" /db_xref="GI:308171917" /db_xref="GeneID:9780420" /translation="MAKDRSDDMDVQNDQANPKLADTLPEEKRKAARQLAEKLDHENM QSIVLFGSQAQTNLLEFSHTMIEHVQRKDAGEMGQILADLMRKLDQVNPDDLQMKNKG FFARLFKRVSGSVQEVLSKYQKTSVQIERISRRLEHSKNVLLSDNKLLDQLYAQNKQY FSDLNLYIAAGELKLDELKTKLIPEAARKAESREHNQMAAQEVNDLRQFADRLDKRVH DLLLSRQITLQSAPQIRLIQNTNQALAEKIQSSIVTAIPLWKNQVAIALTLMRQRSAA DAQQKAADTTNQLLLKNAELLKTSTVETAKANERGLVEADTLKKVQESLVSTLEEIMS IQEDGRMKRKRAEEELVIMEGDLKKKLLNMTLGRDDV" misc_feature 37743..38741 /gene="yaaN" /locus_tag="BAMF_0026" /note="Toxic anion resistance protein (TelA); Region: TelA; pfam05816" /db_xref="CDD:147781" gene 38843..40276 /gene="yaaO" /locus_tag="BAMF_0027" /db_xref="GeneID:9780441" CDS 38843..40276 /gene="yaaO" /locus_tag="BAMF_0027" /EC_number="4.1.1.18" /function="Arginine/lysine/ornithine decarboxylases" /note="Lysine decarboxylase, inducible; LDC;, Orn/Lys/Arg decarboxylase, major region, Orn/Lys/Arg decarboxylase, major domain" /codon_start=1 /transl_table=11 /product="lysine decarboxylase" /protein_id="YP_003918623.1" /db_xref="GI:308171918" /db_xref="GeneID:9780441" /translation="MDTPLYTALLKHAHRNTYSFHVPGHHNGDVFFDEAKSVYQSLLS IDMTEITGLDDLHHPTGVIKEAQDLVSRLYGSQESFFLVNGTTAGNLAMILAVCEPDE PILIQRNCHKSVFHAVAMAGAKPVYLAPEIDKNMHVPSYVSLSVIEKALASYPNAKGL VLTNPTYYGHAADLNAAVKKAHSYGVPVLVDEAHGAHFVLGEPFPPSSLAMGADAVVQ SAHKTLPAMTMGSYFHLNSSRIDRDRLTYYLSSLQSSSPSYPIMASLDTARAYIQDIA EKGTLPVHIAHIEQIKRNFASISSIEVIEPSGYGIKADPLKLILRSKLGHSGYSLQNI LESEGIFAELADEYQVLLVLPIGGRRMIKQETVKNIQQKLENTPPDRLPEAVDWTFPS ITTLEYPQNEMRKFAKELTDMNKAAGRLHAGNIIPYPPGIPLIMDGERITEEIVQKLS RLIGMDAHIQGLLNGEQLLVYTEEEKS" misc_feature 38843..40243 /gene="yaaO" /locus_tag="BAMF_0027" /note="Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]; Region: LdcC; COG1982" /db_xref="CDD:32165" misc_feature 38852..39658 /gene="yaaO" /locus_tag="BAMF_0027" /note="Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and...; Region: Orn_deC_like; cd00615" /db_xref="CDD:99739" misc_feature order(38978..38980,38990..38992,39014..39016,39089..39097, 39101..39106,39113..39115,39125..39133,39137..39142, 39173..39178,39503..39508,39515..39529,39581..39586, 39590..39598,39602..39604,39623..39625,39632..39634, 39641..39643) /gene="yaaO" /locus_tag="BAMF_0027" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99739" misc_feature order(39095..39103,39173..39175,39179..39181,39329..39331, 39413..39415,39419..39424,39497..39499,39503..39508) /gene="yaaO" /locus_tag="BAMF_0027" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99739" misc_feature 39506..39508 /gene="yaaO" /locus_tag="BAMF_0027" /note="catalytic residue [active]" /db_xref="CDD:99739" misc_feature <40037..>40174 /gene="yaaO" /locus_tag="BAMF_0027" /note="Orn/Lys/Arg decarboxylase, C-terminal domain; Region: OKR_DC_1_C; pfam03711" /db_xref="CDD:112521" gene 40273..40911 /gene="tmk" /locus_tag="BAMF_0028" /db_xref="GeneID:9780442" CDS 40273..40911 /gene="tmk" /locus_tag="BAMF_0028" /EC_number="2.7.4.9" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="thymidylate kinase" /protein_id="YP_003918624.1" /db_xref="GI:308171919" /db_xref="GeneID:9780442" /translation="MSGLFITFEGPEGAGKTTVLQEIKDILSAEGHPVTATREPGGID IAEQIREVILNKNNTLMDAKTEALLYAAARRQHLVEKVQPALKEGRIVLCDRFIDSSL AYQGYARGLGIDEVFSINRFAIGDTMPDVTIYFSIDPEEGLKRITSNDSREKNRLDLE ALHFHTKVREGYQKVMQRFPERFHTIDASRKKEFVIQDALQVINEALKKIQL" misc_feature 40273..40896 /gene="tmk" /locus_tag="BAMF_0028" /note="thymidylate kinase; Validated; Region: tmk; PRK00698" /db_xref="CDD:179089" misc_feature 40282..40887 /gene="tmk" /locus_tag="BAMF_0028" /note="Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting...; Region: TMPK; cd01672" /db_xref="CDD:30190" misc_feature order(40321..40323,40480..40482,40492..40494,40555..40560, 40582..40584,40717..40719) /gene="tmk" /locus_tag="BAMF_0028" /note="TMP-binding site; other site" /db_xref="CDD:30190" misc_feature order(40324..40326,40705..40707,40834..40836) /gene="tmk" /locus_tag="BAMF_0028" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:30190" gene 40982..41311 /gene="yaaQ" /locus_tag="BAMF_0029" /db_xref="GeneID:9780310" CDS 40982..41311 /gene="yaaQ" /locus_tag="BAMF_0029" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918625.1" /db_xref="GI:308171920" /db_xref="GeneID:9780310" /translation="MKLIVAVVQDQDSNRLLKVLTDHNFRVTKLATTGGFLKSGNTTF MIGVEDIRVDKALSLIKENGCKRDQMIAPVSPMGGNADSYVPYPVEVEVGGATVFVLP VDEFHQF" misc_feature 40982..41308 /gene="yaaQ" /locus_tag="BAMF_0029" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene 41324..41764 /gene="yaaR" /locus_tag="BAMF_0030" /db_xref="GeneID:9780443" CDS 41324..41764 /gene="yaaR" /locus_tag="BAMF_0030" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918626.1" /db_xref="GI:308171921" /db_xref="GeneID:9780443" /translation="MKINSDLRTFIEKKQQPAYKVAELSGTFKSSMDSQSSKLKFDQL SRFLTDIETFGKRLTKSRNFKDLAKFKGLVKRFVKEAVDSGLSHETAKSFDLYGNSRT LGLVKEIDEKLIQLTEEMLDQEKPAIDLLDRIGEIKGLLINLYT" misc_feature 41324..41761 /gene="yaaR" /locus_tag="BAMF_0030" /note="Protein of unknown function (DUF327); Region: DUF327; cl00753" /db_xref="CDD:193929" gene 41776..42765 /gene="holB" /locus_tag="BAMF_0031" /db_xref="GeneID:9780444" CDS 41776..42765 /gene="holB" /locus_tag="BAMF_0031" /EC_number="2.7.7.7" /function="16.9: Replicate" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit delta'" /protein_id="YP_003918627.1" /db_xref="GI:308171922" /db_xref="GeneID:9780444" /translation="MAISWKEMTEQQPRVMRLLHNSIEKKRLSHAYLFEGKKGTGKLD AALLLAKSFFCLEAGTEPCGECRNCKRIASGNHPDLHVVQPDGLSIKKAQIQSLQEEF SKTGLESHKKLYIISHADQMTTNAANSLLKFLEEPSQDTIAILITEQLHRILDTIVSR CQVLPFQPLQPKAIEERLMEQEVSPHMARLLANMTNNIAEAVELSRNDEFAESRAKVI KLYEVLHQRKGHAFFFIQDQWVPFFKEKTHQEMGLDMLLLIYRDVLSIQIGNEDKLIY QDLFQSIKQHALQFTQQSVTNQILAVLEAKKRLHSNVNAQGLMEHLVLTLQEG" misc_feature 41779..42762 /gene="holB" /locus_tag="BAMF_0031" /note="DNA polymerase III subunit delta'; Validated; Region: PRK08058" /db_xref="CDD:181214" misc_feature <42115..>42264 /gene="holB" /locus_tag="BAMF_0031" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 42768..43595 /gene="yaaT" /locus_tag="BAMF_0032" /db_xref="GeneID:9779021" CDS 42768..43595 /gene="yaaT" /locus_tag="BAMF_0032" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918628.1" /db_xref="GI:308171923" /db_xref="GeneID:9779021" /translation="MYNVIGVRFKKAGKIYYFDPNGFDIEQDSCVIVETVRGVEYGQV VIANKQVDEHDVVLPLRKVIRVADERDLLIVEENKQEALSAFEICQKKVADHGLDMKL VDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQ LPDLGEMITTANGPAKVVGLNILERVLQVELKNREKVIEYTWEELLEEGVVSAQTTD" misc_feature 42768..43562 /gene="yaaT" /locus_tag="BAMF_0032" /note="PSP1 C-terminal conserved region; Region: PSP1; cl00770" /db_xref="CDD:153984" gene 43610..43969 /gene="yabA" /locus_tag="BAMF_0033" /db_xref="GeneID:9780445" CDS 43610..43969 /gene="yabA" /locus_tag="BAMF_0033" /function="16.9: Replicate16.3: Control" /codon_start=1 /transl_table=11 /product="subunit of the DNA replication complex" /protein_id="YP_003918629.1" /db_xref="GI:308171924" /db_xref="GeneID:9780445" /translation="MDKKELIDTVINLEEQIGSLYRQLGDLKQHIGEMIEENHHLQLE NKHLRKRLDDTTEQIEKFKADQKETKTQKAEQSDIGEGYDNLARLYQEGFHICNVHYG SVRKGDCLFCLSFLNKK" misc_feature 43610..43966 /gene="yabA" /locus_tag="BAMF_0033" /note="Protein of unknown function (DUF972); Region: DUF972; cl01853" /db_xref="CDD:194201" gene 44030..44773 /gene="yabB" /locus_tag="BAMF_0034" /db_xref="GeneID:9780446" CDS 44030..44773 /gene="yabB" /locus_tag="BAMF_0034" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_003918630.1" /db_xref="GI:308171925" /db_xref="GeneID:9780446" /translation="MVSLRDDERLDYLLAEDMKIVQSPTVFAFSLDAVLLSKFAYVPI QKGNIVDLCTGNGIVPLLLSTRSKADITGVEIQERLYDMALRSVEYNGLGGQISLIHD DLKNMPDRLGHNKYDVVTCNPPYFKTPKEAEQNLNEHLRIARHEILCTLEDVISVSSK LLKQGGKAALVHRPGRLLEIFELMKAYRIEPKRVQFIYPKQGKEANTILVEGIKGGRP DLKILPPLFVYNEQNEYTKEIRTILYGDE" misc_feature 44039..44764 /gene="yabB" /locus_tag="BAMF_0034" /note="Predicted O-methyltransferase [General function prediction only]; Region: COG4123" /db_xref="CDD:33880" misc_feature 44171..44452 /gene="yabB" /locus_tag="BAMF_0034" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(44183..44203,44252..44257,44333..44341,44393..44395) /gene="yabB" /locus_tag="BAMF_0034" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 44760..45059 /gene="yazA" /locus_tag="BAMF_0035" /db_xref="GeneID:9780447" CDS 44760..45059 /gene="yazA" /locus_tag="BAMF_0035" /function="16.6: Maintain16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="UvrC-Intron-type (URI) endonuclease" /protein_id="YP_003918631.1" /db_xref="GI:308171926" /db_xref="GeneID:9780447" /translation="METNSHFFYVLLCNDNSLYAGYTNDLQKRLKTHNEGKGAKYTRA RRPVSLCHAESFETKREAMQAEYRFKQLTRKKKEQYIEEKRSSKEAVYVKSPDEF" misc_feature 44760..45014 /gene="yazA" /locus_tag="BAMF_0035" /note="GIY-YIG catalytic domain; Region: GIY-YIG; cl01061" /db_xref="CDD:194023" gene 45034..45915 /gene="yabC" /locus_tag="BAMF_0036" /db_xref="GeneID:9780466" CDS 45034..45915 /gene="yabC" /locus_tag="BAMF_0036" /function="16.8: Protect16.3: Control" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_003918632.1" /db_xref="GI:308171927" /db_xref="GeneID:9780466" /translation="MLSRQMSFNGKSEMGILYLVPTPIGNLEDMTFRAVETLKSVDVI AAEDTRQTKKLCHVYDIETSLTSYHEHNKESSGHKIIEWLKTGKNVALVSDAGMPTIS DPGAEIVRDFTQIGGYVVPLPGANAALTALTASGITPQPFFFYGFLNRQKKEKKKELE ILKKRQETMIFYEAPHRLKETLTAMHAVLGNRNIAVTRELTKKYEEFIRGTIAEVIEW ANEDQIRGEFCLVVEGNQAAEPDEDDKPWWMELSEKEHVEHYINEGASSKQAIKQTAV DRDVPKREIYDAYHIQS" misc_feature 45073..45909 /gene="yabC" /locus_tag="BAMF_0036" /note="Predicted methyltransferases [General function prediction only]; Region: COG0313" /db_xref="CDD:30661" misc_feature 45076..45750 /gene="yabC" /locus_tag="BAMF_0036" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene complement(45964..46248) /gene="abrB" /locus_tag="BAMF_0037" /db_xref="GeneID:9780448" CDS complement(45964..46248) /gene="abrB" /locus_tag="BAMF_0037" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="transition state genes transcriptional regulator" /protein_id="YP_003918633.1" /db_xref="GI:308171928" /db_xref="GeneID:9780448" /translation="MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKII LKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNQK" misc_feature complement(46003..46248) /gene="abrB" /locus_tag="BAMF_0037" /note="SpoVT / AbrB like domain; Region: SpoVT_AbrB; cl00877" /db_xref="CDD:186236" gene 46737..48728 /gene="metS" /locus_tag="BAMF_0038" /db_xref="GeneID:9778276" CDS 46737..48728 /gene="metS" /locus_tag="BAMF_0038" /EC_number="6.1.1.10" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="methionyl-tRNA synthetase" /protein_id="YP_003918634.1" /db_xref="GI:308171929" /db_xref="GeneID:9778276" /translation="MPQENNTFYITTPIYYPSGKLHIGHAYTTVAGDAMARYKRLKGF DVRYLTGTDEHGQKIQQKAEEENITPQAYVDRAVAEIQKLWKQLDISHDDFIRTTESR HKEIIEKVFQKLLDNGDIYLDEYEGWYSIPDETFYTETQLVDVERNEKGEVVGGKSPD SGHPVELIKEESYFFRMSKYADRLLKFYEENPSFIQPESRKNEMINNFIKPGLEDLAV SRTTFDWGVKVPGNPKHVVYVWIDALFNYITALGYDTENDELYKKYWPADVHLVGKEI VRFHTIYWPIMLMALDLPLPKQVFAHGWLLMKDGKMSKSKGNVVDPVTLIERYGLDEL RYYLLREVPFGSDGVFTPEGFVERINYDLANDLGNLLNRTVAMIQKYFDGEIGSYEGN VTDFDQELSSVAGETVQAYEKAMENMEFSVALSTLWQLISRTNKYIDETAPWVLAKDP EKEKELRSVMYHLAESLRISAVLLQPFLTQTPEKMFAQLGVEDQSLKAWDSIQTFGQL KSTKVKKGEPLFPRLEAEEEVAYIKQKMQGTAPVKEEKAEEPQEVERLTEITFDQFMD TELRVAEVLSAEPVKKADRLLKLQIDLGFEQRQVVSGIAKHYTPDQLVGMKIICVTNL KPVKLRGELSQGMILAGESDGVLKVVAVDQSLPKGTRIK" misc_feature 46743..48725 /gene="metS" /locus_tag="BAMF_0038" /note="methionyl-tRNA synthetase; Reviewed; Region: PRK12267" /db_xref="CDD:183389" misc_feature 46755..47786 /gene="metS" /locus_tag="BAMF_0038" /note="catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814" /db_xref="CDD:173907" misc_feature order(46773..46778,46782..46784,46893..46895,47454..47456, 47463..47468,47475..47477,47562..47564,47574..47576) /gene="metS" /locus_tag="BAMF_0038" /note="active site" /db_xref="CDD:173907" misc_feature 46800..46811 /gene="metS" /locus_tag="BAMF_0038" /note="HIGH motif; other site" /db_xref="CDD:173907" misc_feature 47667..47681 /gene="metS" /locus_tag="BAMF_0038" /note="KMSKS motif; other site" /db_xref="CDD:173907" misc_feature 47811..48203 /gene="metS" /locus_tag="BAMF_0038" /note="Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957" /db_xref="CDD:153411" misc_feature order(47814..47816,47835..47840,47847..47852,47859..47864, 47871..47876,47883..47888,48039..48044,48048..48053, 48066..48068) /gene="metS" /locus_tag="BAMF_0038" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153411" misc_feature order(47835..47837,47847..47852,47859..47864,47871..47876, 47883..47888,48048..48050,48066..48068) /gene="metS" /locus_tag="BAMF_0038" /note="anticodon binding site; other site" /db_xref="CDD:153411" misc_feature 48411..48725 /gene="metS" /locus_tag="BAMF_0038" /note="tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine...; Region: tRNA_bind_EcMetRS_like; cd02800" /db_xref="CDD:48402" misc_feature order(48414..48416,48555..48557,48603..48611,48618..48620, 48654..48665,48681..48683,48687..48689,48693..48695, 48702..48704,48714..48725) /gene="metS" /locus_tag="BAMF_0038" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48402" misc_feature order(48489..48491,48525..48527,48603..48605,48615..48617, 48636..48638,48645..48647) /gene="metS" /locus_tag="BAMF_0038" /note="putative tRNA-binding site [nucleotide binding]; other site" /db_xref="CDD:48402" gene 48802..49572 /gene="yabD" /locus_tag="BAMF_0039" /db_xref="GeneID:9779226" CDS 48802..49572 /gene="yabD" /locus_tag="BAMF_0039" /EC_number="3.1.21.-" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="metal-dependent DNase" /protein_id="YP_003918635.1" /db_xref="GI:308171930" /db_xref="GeneID:9779226" /translation="MMLFDTHAHLNAEQFDTDLEEVIARAKAEKVERIVVVGFDKPTI TRAMELIEEYHFIYAAIGWHPVDAIDMTEEDLTWIKELSSHEKVVAIGEMGLDYHWDK SPKDIQKEVFRKQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEEVGGIMHCFTGSA EVARQCMDMNFYISFGGPVTFKNAKKPKEVAKEIPNDRLLIETDCPFLTPHPFRGKRN EPSYVKYVAEQLAELKGLTYEEIASITTENAKRLFRMN" misc_feature 48808..49563 /gene="yabD" /locus_tag="BAMF_0039" /note="TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310" /db_xref="CDD:30053" misc_feature 48814..49566 /gene="yabD" /locus_tag="BAMF_0039" /note="putative deoxyribonuclease YjjV; Provisional; Region: PRK11449" /db_xref="CDD:171118" misc_feature order(48820..48822,48826..48828,49186..49188,49261..49263, 49411..49413) /gene="yabD" /locus_tag="BAMF_0039" /note="active site" /db_xref="CDD:30053" gene 49689..51026 /gene="yabE1" /locus_tag="BAMF_0040" /db_xref="GeneID:9780449" CDS 49689..51026 /gene="yabE1" /locus_tag="BAMF_0040" /function="16.13: Shape" /codon_start=1 /transl_table=11 /product="cell wall shaping enzyme" /protein_id="YP_003918636.1" /db_xref="GI:308171931" /db_xref="GeneID:9780449" /translation="MLCFCIMRDTLKVFDLRDGRVDSILDTLYNLSEEKEAFFITQKM KKLFSVKLGKSKVILIAAIILLGGTGTAYGAHELSKQSVSVSINGKKKQIRTHAKTVG ELLEDLHIKTRNEDRITPSKQTALADNMNVVYEAAKQIRVTRGGEEKTLWSTAKTVGA FLDEQHTPVNQHDKIDPAADTKVTNGMKVTVDPAFQVTVNDAGKKKKIWTTSTTVADF LTQHKMDMKDEDKVKPALHEKLTKDQAGIQITRIEKVTDVVEEKIAYQVKEKEDASLD SGEEKIVQKGKEGKLKKHFHVVKENGKEVSRKLVKEETSEKSKDQIIAVGTKRHSPKI EQLSAKASSGEAGSSGKVITVSSTAYTASCSGCSGHTATGVNLTSNPNAKVIAVDPSV IPLGTRVHVDGYGDAVAADTGSAIKGRRIDVFFPEKSSAYRWGKKQVKIKILN" misc_feature 49818..50693 /gene="yabE1" /locus_tag="BAMF_0040" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3583" /db_xref="CDD:33383" misc_feature 49932..50060 /gene="yabE1" /locus_tag="BAMF_0040" /note="Domain of unknown function (DUF348); Region: DUF348; pfam03990" /db_xref="CDD:146562" misc_feature 50103..50231 /gene="yabE1" /locus_tag="BAMF_0040" /note="Domain of unknown function (DUF348); Region: DUF348; pfam03990" /db_xref="CDD:146562" misc_feature 50274..50402 /gene="yabE1" /locus_tag="BAMF_0040" /note="Domain of unknown function (DUF348); Region: DUF348; pfam03990" /db_xref="CDD:146562" misc_feature 50439..50672 /gene="yabE1" /locus_tag="BAMF_0040" /note="G5 domain; Region: G5; pfam07501" /db_xref="CDD:148868" misc_feature 50742..51017 /gene="yabE1" /locus_tag="BAMF_0040" /note="3D domain; Region: 3D; cl01439" /db_xref="CDD:194136" gene 51161..51724 /gene="rnmV" /locus_tag="BAMF_0041" /db_xref="GeneID:9780450" CDS 51161..51724 /gene="rnmV" /locus_tag="BAMF_0041" /function="16.6: Maintain" /codon_start=1 /transl_table=11 /product="ribonuclease M5" /protein_id="YP_003918637.1" /db_xref="GI:308171932" /db_xref="GeneID:9780450" /translation="MKIKEIIVVEGRDDTARIKLAVDADTIETNGSAIGDEVIRQIRL AQETRGVIVLTDPDFPGEKIRKTISEAVPGCKHAFLPKHLAKPKNKRGIGVEHASIES IRACLENVHEEMEAKPSEISAEDLIQAGLIGGPAAKRRRERLGDLLKIGYTNGKQLQK RLQMFQIKRSDFIDALDAMMQEEQDEQ" misc_feature 51164..51691 /gene="rnmV" /locus_tag="BAMF_0041" /note="ribonuclease M5; Region: 5S_RNA_mat_M5; TIGR00334" /db_xref="CDD:161823" misc_feature 51167..51400 /gene="rnmV" /locus_tag="BAMF_0041" /note="TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in...; Region: TOPRIM_RNase_M5_like; cd01027" /db_xref="CDD:173777" misc_feature order(51188..51193,51200..51202,51326..51328,51332..51334, 51338..51340) /gene="rnmV" /locus_tag="BAMF_0041" /note="putative active site [active]" /db_xref="CDD:173777" misc_feature order(51188..51190,51326..51328) /gene="rnmV" /locus_tag="BAMF_0041" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:173777" gene 51714..52595 /gene="ksgA" /locus_tag="BAMF_0042" /db_xref="GeneID:9779948" CDS 51714..52595 /gene="ksgA" /locus_tag="BAMF_0042" /EC_number="2.1.1.-" /function="16.6: Maintain16.8: Protect" /codon_start=1 /transl_table=11 /product="dimethyladenosine 16S ribosomal RNA transferase" /protein_id="YP_003918638.1" /db_xref="GI:308171933" /db_xref="GeneID:9779948" /translation="MNNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILDRIVDH AEITDRTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILNDTLSPYDNVTIIHH DVLKADVKSVIEEQFQDCDEIMVTANLPYYVTTPIIMKLLEEHLPLKGIVVMLQKEVA ERMAADPSSKEYGSLSIAVQFYTEAKTVMTVPKTVFVPQPNVDSAVIRLLLRDGPAVD VDNESFFFQLIKASFAQRRKTLLNNLVNNLPGGKEKKPQIEEVLQETNIDGKRRGESL SIEEFALLSNGLYKALF" misc_feature 51735..52589 /gene="ksgA" /locus_tag="BAMF_0042" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 52769..53644 /gene="yabG" /locus_tag="BAMF_0043" /db_xref="GeneID:9779100" CDS 52769..53644 /gene="yabG" /locus_tag="BAMF_0043" /function="16.5: Explore16.13: Shape" /codon_start=1 /transl_table=11 /product="sporulation-specific protease" /protein_id="YP_003918639.1" /db_xref="GI:308171934" /db_xref="GeneID:9779100" /translation="MQFQIGDMVARKSYQMDVLFRIIGIEQTSKGNSIAILHGDEVRL IADADFSDLEPVRKDEQAVRKQKDESRMNESLELLRQDYKLLREKQEYYATNQYQHQE HYFHMPGKVLHLDGDEAYLKKCLNFYEKIGVPVYGIHCHEKKMAASIEELLDKYRPDI LVITGHDAYSKHKGGVNDLSAYRHSKHFVETVQRARRKVPHLDQLVIFAGACQSHFES LIRAGANFASSPSRVNIHALDPVYIVAKISFTPFMERINVWDVLRNTLTREKGLGGIE TKGVLRVGMPYKSNG" misc_feature 52778..53629 /gene="yabG" /locus_tag="BAMF_0043" /note="YabG peptidase U57; Region: Peptidase_U57; cl05250" /db_xref="CDD:164072" gene 53855..54115 /gene="veg" /locus_tag="BAMF_0044" /db_xref="GeneID:9780452" CDS 53855..54115 /gene="veg" /locus_tag="BAMF_0044" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918640.1" /db_xref="GI:308171935" /db_xref="GeneID:9780452" /translation="MAKTLSDIKRSLDGNLGKRLTLKANGGRRKTIERSGILAETYPS VFVIQLDQDENSFERVSYSYADILTETVELTFNDDAASSVAF" misc_feature 53855..54082 /gene="veg" /locus_tag="BAMF_0044" /note="Protein of unknown function (DUF1021); Region: DUF1021; cl01852" /db_xref="CDD:154626" gene 54278..54466 /gene="sspF" /locus_tag="BAMF_0045" /db_xref="GeneID:9780372" CDS 54278..54466 /gene="sspF" /locus_tag="BAMF_0045" /function="16.5: Explore16.8: Protect" /codon_start=1 /transl_table=11 /product="small acid-soluble spore protein (alpha/beta-type SASP)" /protein_id="YP_003918641.1" /db_xref="GI:308171936" /db_xref="GeneID:9780372" /translation="MGRRRGVMSDEFKYELAKDLGFYDTVKNEGWGGIRARDAGNMVK RAIEIAEQQMAAQNQNNR" gene 54611..55480 /gene="ispE" /locus_tag="BAMF_0046" /db_xref="GeneID:9780217" CDS 54611..55480 /gene="ispE" /locus_tag="BAMF_0046" /EC_number="2.7.1.148" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase" /protein_id="YP_003918642.1" /db_xref="GI:308171937" /db_xref="GeneID:9780217" /translation="MRILEKAPAKINLSLDVTSKRPDGYHEVEMIMTTIDLADRIELT ELPENVIRVASHNRFVPDDQRNLAYQAAKLLKERYQVKKGVSIMITKVIPVAAGLAGG SSDAAATLRGLNRLWDLKLSVEELAELGAEIGSDVSFCVYGGTALATGRGEKIRHISA PPHCWVVLAKPTIGVSTAEVYRRLNLQQVRHPDVQAMIDAIEEKSFQKVCGQLGNVLE SVTLNLHPEVAMIKNQMKRFGADAVLMSGSGPTVFGLVQYESKVQRIYNGLRGFCDQV YAVRMIGEQNALD" misc_feature 54611..55468 /gene="ispE" /locus_tag="BAMF_0046" /note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: ipk; PRK00128" /db_xref="CDD:178884" misc_feature 54866..55042 /gene="ispE" /locus_tag="BAMF_0046" /note="GHMP kinases N terminal domain; Region: GHMP_kinases_N; cl08256" /db_xref="CDD:195670" misc_feature 55199..55435 /gene="ispE" /locus_tag="BAMF_0046" /note="GHMP kinases C terminal; Region: GHMP_kinases_C; pfam08544" /db_xref="CDD:192062" gene 55536..56393 /gene="purR" /locus_tag="BAMF_0047" /db_xref="GeneID:9779073" CDS 55536..56393 /gene="purR" /locus_tag="BAMF_0047" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="purine biosynthesis operon transcriptional regulator" /protein_id="YP_003918643.1" /db_xref="GI:308171938" /db_xref="GeneID:9779073" /translation="MKFRRSGRLVDLTNYLLTHPHELIPLTFFSERYQSAKSSISEDL TIIKQTFEQQGIGTLLTVPGAAGGVKYIPKVKQAEAEAFIQELGQSLVNPERILPGGY VYLTDILGKPSVLSNAGRLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVR KDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSLATGSNVLIIDDFMKAGGTINGMISL LDEFNANVAGIGVLVEAEGVNERLVDEYMSLLTLSTINMKDKTIEIQNGNFLRFFKEQ HLKNGETEK" misc_feature 55536..56348 /gene="purR" /locus_tag="BAMF_0047" /note="pur operon repressor; Provisional; Region: PRK09213" /db_xref="CDD:181702" misc_feature 55545..55754 /gene="purR" /locus_tag="BAMF_0047" /note="Bacterial purine repressor, N-terminal; Region: PuR_N; pfam09182" /db_xref="CDD:150015" misc_feature 55773..56306 /gene="purR" /locus_tag="BAMF_0047" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 56390..56770 /gene="yabJ" /locus_tag="BAMF_0048" /db_xref="GeneID:9779594" CDS 56390..56770 /gene="yabJ" /locus_tag="BAMF_0048" /function="16.6: Maintain16.3: Control" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918644.1" /db_xref="GI:308171939" /db_xref="GeneID:9779594" /translation="MTKAIHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTAEGEMVNG DITEQTHQVFSNLKAVLKEAGASLETVVKATVFIADMEQFAEVNEVYGQYFDVHKPAR SCVEVARLPKDALVEIEVIALVKS" misc_feature 56438..56755 /gene="yabJ" /locus_tag="BAMF_0048" /note="YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448" /db_xref="CDD:100004" misc_feature order(56438..56443,56450..56452,56456..56458,56465..56467, 56471..56473,56477..56482,56597..56599,56603..56608, 56612..56614,56618..56620,56651..56653,56660..56662, 56687..56710,56738..56740,56744..56746,56750..56752) /gene="yabJ" /locus_tag="BAMF_0048" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100004" misc_feature order(56438..56440,56639..56641,56651..56653,56693..56695, 56738..56740) /gene="yabJ" /locus_tag="BAMF_0048" /note="putative active site [active]" /db_xref="CDD:100004" gene 56966..57259 /gene="spoVG" /locus_tag="BAMF_0049" /db_xref="GeneID:9780453" CDS 56966..57259 /gene="spoVG" /locus_tag="BAMF_0049" /function="Uncharacterized protein, involved in the regulation of septum location" /note="septation protein spoVG; Stage V sporulation protein G;, Sporulation stage V, protein G, SpoVG" /codon_start=1 /transl_table=11 /product="septation protein spoVG stage V sporulation protein G" /protein_id="YP_003918645.1" /db_xref="GI:308171940" /db_xref="GeneID:9780453" /translation="MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLF VAMPSKRTPDGEFRDIAHPINSSTRGKIQDAVLNEYHRLGDSEALEYEEAGAS" misc_feature 56966..57256 /gene="spoVG" /locus_tag="BAMF_0049" /note="SpoVG; Region: SpoVG; cl00915" /db_xref="CDD:186257" gene 57450..58820 /gene="gcaD" /locus_tag="BAMF_0050" /db_xref="GeneID:9780183" CDS 57450..58820 /gene="gcaD" /locus_tag="BAMF_0050" /EC_number="2.7.7.23" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine pyrophosphorylase" /protein_id="YP_003918646.1" /db_xref="GI:308171941" /db_xref="GeneID:9780183" /translation="MDKRFAVILAAGKGTRMKSKLYKVLHPVCGKPMVEHVADEALKL SLAKLVTIVGHGAEDVKKQLGQKSDYAIQAEQLGTAHAVKQAKPFLHGEKGVTIVICG DTPLLTAETMEAMLNEHTNKGAKATVLTAVAEDPAGYGRIIRSEDGAVQKIVEHKDAS EQERLVKEINTGTYCFDNEALFRVIEQVSNENAQGEYYLPDVIEILKDEGETVAAYQT GNFQETLGVNDRVALSQAEMYMKERINKRHMQNGVTLIDPMNTYISPDARIGQDTVIY PGTVLKGQAEIGDECVIGPHTEIEDSSIGSRTVIKQSVVNRSKVGNDVNIGPFAHIRP DSAIGNEVKIGNFVEIKKTQFGDRSKASHLSYIGDAEVGTDVNLGCGSITVNYDGKKK YLTKIEDGAFIGCNSNLVAPVTVGEGAYVAAGSTVTEDVPGEALAIARARQVNKEDYV KNIHKK" misc_feature 57453..58817 /gene="gcaD" /locus_tag="BAMF_0050" /note="bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional; Region: glmU; PRK14354" /db_xref="CDD:184643" misc_feature 57465..58148 /gene="gcaD" /locus_tag="BAMF_0050" /note="N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540" /db_xref="CDD:133020" misc_feature order(57474..57482,57603..57605,57684..57686,57693..57695, 57750..57752,57756..57758) /gene="gcaD" /locus_tag="BAMF_0050" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133020" misc_feature order(57756..57758,58131..58133) /gene="gcaD" /locus_tag="BAMF_0050" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133020" misc_feature 58203..58778 /gene="gcaD" /locus_tag="BAMF_0050" /note="N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353" /db_xref="CDD:100044" misc_feature order(58446..58448,58494..58496,58500..58502,58536..58538, 58545..58547,58578..58589,58602..58610,58623..58625, 58653..58655,58659..58664,58713..58718,58767..58769) /gene="gcaD" /locus_tag="BAMF_0050" /note="active site" /db_xref="CDD:100044" misc_feature order(58446..58448,58494..58496,58500..58502,58536..58538, 58545..58547,58578..58586,58605..58607,58623..58625) /gene="gcaD" /locus_tag="BAMF_0050" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100044" misc_feature order(58587..58589,58602..58604,58608..58610,58659..58664, 58713..58718,58767..58769) /gene="gcaD" /locus_tag="BAMF_0050" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100044" gene 58842..59795 /gene="prs" /locus_tag="BAMF_0051" /db_xref="GeneID:9778868" CDS 58842..59795 /gene="prs" /locus_tag="BAMF_0051" /EC_number="2.7.6.1" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="phosphoribosylpyrophosphate synthetase" /protein_id="YP_003918647.1" /db_xref="GI:308171942" /db_xref="GeneID:9778868" /translation="MSNEYGDKNLKIFSLNSNPELAKEIADNVGVQLGKCSVTRFSDG EVQINIEESIRGCDCYIIQSTSAPVNEHIMELLIMVDALKRASAKTINIVIPYYGYAR QDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGHY FEGKDLKDIVIVSPDHGGVTRARKLADRLKAPIAIIDKRRPRPNEVEVMNIVGNVEGK TAILIDDIIDTAGTITLAANALVENGAAEVYACCTHPVLSGPAVERINNSKIKELVVT NSIKLPEEKKIERFKQLSVGPLLAEAIIRVHEKQSVSYLFS" misc_feature 58866..59789 /gene="prs" /locus_tag="BAMF_0051" /note="ribose-phosphate pyrophosphokinase; Provisional; Region: PRK02269" /db_xref="CDD:167353" misc_feature 58869..59789 /gene="prs" /locus_tag="BAMF_0051" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 59880..60488 /gene="ctc" /locus_tag="BAMF_0052" /db_xref="GeneID:9779558" CDS 59880..60488 /gene="ctc" /locus_tag="BAMF_0052" /function="Ribosomal protein L25 (general stress protein Ctc)" /note="50S ribosomal protein L25; General stress protein CTC;, Ribosomal protein L25, Ribosomal L25p family, ctc_TL5: ribosomal protein L25, Ctc-form" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L25 General stress protein CTC" /protein_id="YP_003918648.1" /db_xref="GI:308171943" /db_xref="GeneID:9779558" /translation="MATLKANERTDFKRSTLRKIRHSGHVPGIIYGKETTNTPVSLDS VELLKTLRDEGKNTIITIDVNGNQQSVMVTELQTDPLKNELTHADFQVVNMSEELEAE VPIQLTGEAKGVKDGGIIQQPLHELSIKAKPKDIPQTIDVDISGLEMNDVLTIADLTA DGNYTFTNDPEEVVASILPPKQEAFEEDAEPSPEEEPEGENQ" misc_feature 59886..60152 /gene="ctc" /locus_tag="BAMF_0052" /note="Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this...; Region: Ribosomal_L25_TL5_CTC; cd00495" /db_xref="CDD:88604" misc_feature order(59904..59906,59928..59936,59940..59942,59970..59978, 59988..59990,60099..60104,60108..60110,60138..60140, 60144..60146,60150..60152) /gene="ctc" /locus_tag="BAMF_0052" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88604" misc_feature order(59976..59978,60051..60053,60087..60089,60099..60101, 60150..60152) /gene="ctc" /locus_tag="BAMF_0052" /note="CTC domain interface; other site" /db_xref="CDD:88604" misc_feature order(60093..60098,60105..60107,60117..60119,60123..60128, 60150..60152) /gene="ctc" /locus_tag="BAMF_0052" /note="L16 interface [polypeptide binding]; other site" /db_xref="CDD:88604" gene 60573..61139 /gene="spoVC" /locus_tag="BAMF_0053" /db_xref="GeneID:9778603" CDS 60573..61139 /gene="spoVC" /locus_tag="BAMF_0053" /EC_number="3.1.1.29" /note="Peptidyl-tRNA hydrolase; PTH;, Peptidyl-tRNA hydrolase, Peptidyl-tRNA hydrolase, pth: peptidyl-tRNA hydrolase" /codon_start=1 /transl_table=11 /product="Peptidyl-tRNA hydrolase" /protein_id="YP_003918649.1" /db_xref="GI:308171944" /db_xref="GeneID:9778603" /translation="MLVIAGLGNPGKTYENTRHNVGFMAIDELSKEWNIELNKTKFNG LYGMGFVSGKKVLLVKPLTYMNLSGECLRPLLDYYDADHEDLKVIYDDLDLPTGKIRL RTKGSAGGHNGIKSLIQHLGTPEFDRVRIGIGRPANGMKVVDYVLGAFTKEEAPHIND AVSKTVKACEASLTKPFLEVMNEFNANV" misc_feature 60579..61091 /gene="spoVC" /locus_tag="BAMF_0053" /note="Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462" /db_xref="CDD:73208" misc_feature order(60597..60599,60627..60629,60762..60767,60843..60845, 60903..60905) /gene="spoVC" /locus_tag="BAMF_0053" /note="putative active site [active]" /db_xref="CDD:73208" misc_feature 60627..60629 /gene="spoVC" /locus_tag="BAMF_0053" /note="catalytic residue [active]" /db_xref="CDD:73208" gene 61201..61431 /gene="subA" /locus_tag="BAMF_0054" /db_xref="GeneID:9780178" CDS 61201..61431 /gene="subA" /locus_tag="BAMF_0054" /note="Uncharacterized protein yabK;, Uncharacterised protein family YabK" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918650.1" /db_xref="GI:308171945" /db_xref="GeneID:9780178" /translation="MALHYFCRHCGIKVGSLEYTTVPTQSLGFQHLTNEERNDMISYK DNGDLHVLTICEDCQEALERNPHYHEHNTFIQ" misc_feature 61201..61428 /gene="subA" /locus_tag="BAMF_0054" /note="Protein of unknown function (DUF2757); Region: DUF2757; pfam10955" /db_xref="CDD:151402" gene 61502..65035 /gene="mfd" /locus_tag="BAMF_0055" /db_xref="GeneID:9780234" CDS 61502..65035 /gene="mfd" /locus_tag="BAMF_0055" /function="16.8: Protect16.6: Maintain" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="YP_003918651.1" /db_xref="GI:308171946" /db_xref="GeneID:9780234" /translation="MDNIQTFIKESDDFKSIVNGLHEGLKEQLLAGLSGSARSVFTSA LAQETKRPIFFITHNLYQAQKVTEDLTALLGDQSVFLYPVNELISSEIAVASPELRAQ RLDVINRLTNGEAPVVVAPVAAVRRMLPPKELWKSSQIVISLGDDIEPDQLSARLVEV GYERSDMVSAPGEFSIRGGIIDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETL KTVAIGPAKELIIRAEEKARAMDRLDKGLADSLKKLKQDKQKEMLHINISHDKERLST GQTDQELVKYLSYFYEKPASLLDYTPSDTLLVLDEVSRIHEMEDQLQKEEAEFTTSLL EEGKILHDINLSFSFQELMGQKRRPAIYFSLFLRHVQHTSPQNIVNVTSRQMQNFHGQ MNVLTGEMERFKKSNFTVVFLGANKDRTDRLASVLADYEIEAAKTDSSKALVQGQVYV MEGELQSGFELPLMKLAVITEEELFKNRIKKKPRKQKLTNAERIKSYSELQVGDYVVH VNHGIGKYLGIETLEIKGIHKDYLNIHYQGSDKLYVPVEQIDQVQKYVGSEGKEPKLY KLGGSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQFEAAFPYQE TDDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQVALLVPTT ILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIKGLKNGTVDIVIGTHRLLSKD VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSV IETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEISMLV PDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKM GLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD LTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTPKIEQFETEIDIELDAY IPENYIQDGKQKIDMYKRFRSITTIEEKNELQDEIIDRFGSYPKEVEWLFTVAEMKVY GKYERVELIKQDKDAVRFTISEEASAQIDGQKLFELGNKYGRQIGLGMEGKKLKISVQ TKGRKTEEWLETVLGMLKGLQGVKKETIASS" misc_feature 61571..65017 /gene="mfd" /locus_tag="BAMF_0055" /note="Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197" /db_xref="CDD:31390" misc_feature 62996..63289 /gene="mfd" /locus_tag="BAMF_0055" /note="CarD-like/TRCF domain; Region: CarD_TRCF; cl00588" /db_xref="CDD:193879" misc_feature 63434..63844 /gene="mfd" /locus_tag="BAMF_0055" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 63461..63475 /gene="mfd" /locus_tag="BAMF_0055" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 63755..63766 /gene="mfd" /locus_tag="BAMF_0055" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature 63923..64312 /gene="mfd" /locus_tag="BAMF_0055" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(64019..64030,64094..64099,64172..64180) /gene="mfd" /locus_tag="BAMF_0055" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(64196..64198,64262..64264,64274..64276,64283..64285) /gene="mfd" /locus_tag="BAMF_0055" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 64571..64867 /gene="mfd" /locus_tag="BAMF_0055" /note="TRCF domain; Region: TRCF; pfam03461" /db_xref="CDD:190644" gene 65172..65708 /gene="spoVT" /locus_tag="BAMF_0056" /db_xref="GeneID:9779227" CDS 65172..65708 /gene="spoVT" /locus_tag="BAMF_0056" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_003918652.1" /db_xref="GI:308171947" /db_xref="GeneID:9779227" /translation="MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEV ILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKEFLNKSISDLL EKTMDQRSSVLENDVKSAQLVNDIEEDMSSYTIAPIVANGDPIGAVVIFSKEQALGEV EHKAVETAASFLARQMEQ" misc_feature 65172..65393 /gene="spoVT" /locus_tag="BAMF_0056" /note="SpoVT / AbrB like domain; Region: SpoVT_AbrB; cl00877" /db_xref="CDD:186236" misc_feature 65175..65702 /gene="spoVT" /locus_tag="BAMF_0056" /note="stage V sporulation protein T; Region: spore_V_T; TIGR02851" /db_xref="CDD:131898" gene 65872..67452 /gene="yabM" /locus_tag="BAMF_0057" /db_xref="GeneID:9780190" CDS 65872..67452 /gene="yabM" /locus_tag="BAMF_0057" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="exporter" /protein_id="YP_003918653.1" /db_xref="GI:308171948" /db_xref="GeneID:9780190" /translation="MNDSVGAKRQSAWKGAFVLVVAGIVTKILSAVYRVPFQNIVGDV GFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSDHKQKIMKISAFYVTAAGLVLFA LMYAGAASLAGFMGDARLVMLIRVAAFAFVLFPFTAIFRGYFQGVHDMMPSALSQITE QLLRVAVLLGLSFWLLKSGRSLYAAGAGAASGSLAGSLAALCVLAVFWYKRKDTKTDG GHIETGVIVKKLLLYSVTICISSVLMLLIQLVDALNLYSLLSDGTGSHAAKQLKGIYD RGQPLLQLGTVFAVSIAASLVPSISKAVHENKPFIIKEKATSAVKLCLAVGIGAAAGL FCILDPVNIMLFQNSEGTQTLQIFSLSIFFASIALTAAAILQGAGHTVFPAVSVLAGG ALKWVLNVWLVPGWGITGAALATVLAFAAAACLNLQRIWSKGWLTNLGGVFARLCGCS LLMVSFLLAYMKVWQLCVPVSRAGAAGESLSASVIGGLLFIYCMIRMKIFTDEELSSL PFGSTLSKLNKRREKYGR" misc_feature 65908..66777 /gene="yabM" /locus_tag="BAMF_0057" /note="Polysaccharide biosynthesis protein; Region: Polysacc_synt; cl10513" /db_xref="CDD:187004" misc_feature 66580..67074 /gene="yabM" /locus_tag="BAMF_0057" /note="MatE; Region: MatE; pfam01554" /db_xref="CDD:190033" gene 67442..68917 /gene="yabN" /locus_tag="BAMF_0058" /db_xref="GeneID:9780454" CDS 67442..68917 /gene="yabN" /locus_tag="BAMF_0058" /function="16.6: Maintain16.8: Protect" /codon_start=1 /transl_table=11 /product="fusion methylase and nucleotide pyrophosphohydrolase" /protein_id="YP_003918654.1" /db_xref="GI:308171949" /db_xref="GeneID:9780454" /translation="MAGNITVVGLGAGDMDQLTVGVHKLLTQAKHLYIRTKDHPLIPE LEQEAAADIRYFDDIYEKHDQFEAVYEEITDILFEKAKQEDVVYAVPGHPFVAEKTVQ LLFERREEQHAAVHTAGGQSFLDATFNALRIDPIEGFQFTDAQTMTPDELELRHHLII CQVYDQMTASEVKLTLMEKLPDDYEVVIVTAAGSKEEKITKVPLFELDRNVGINNLTS VYVPPIRKEELLYQEFSAFRRIIRELRGPNGCPWDQKQTHQSLKKYMIEECYELLEAI DEEDTDHMIEELGDVMLQVMLHAQIGEDEGYFSIDDVIRDISAKMVRRHPHVFKDVKV QDEHDVVANWEEIKKAEKQTTSSSLLDSVPKTLPSLAKAAKLQKKAAKTGFDWDDVQD IWDKVNEELKEFSAEASAESADEVSLKAEFGDVLFALVNIGRYYKIEPEEALAMTNDK FRRRFSYIEKEAAAKGLELTGMSLEEMDKLWDEAKEMERRF" misc_feature 67442..68908 /gene="yabN" /locus_tag="BAMF_0058" /note="Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]; Region: COG3956" /db_xref="CDD:33737" misc_feature 67454..68065 /gene="yabN" /locus_tag="BAMF_0058" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" misc_feature 68207..68428 /gene="yabN" /locus_tag="BAMF_0058" /note="MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345" /db_xref="CDD:193780" gene 68919..69179 /gene="yabO" /locus_tag="BAMF_0059" /db_xref="GeneID:9780455" CDS 68919..69179 /gene="yabO" /locus_tag="BAMF_0059" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="ribosomal RNA binding protein; heat shock protein" /protein_id="YP_003918655.1" /db_xref="GI:308171950" /db_xref="GeneID:9780455" /translation="MRLDKFLKVSRLIKRRTLAKEVADQGRITVNGNQAKASSDVKAG DELTVRFGQKLVTVKVNELKETTKKEEAAGMYTIVKEEKLGE" misc_feature 68919..69176 /gene="yabO" /locus_tag="BAMF_0059" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cl09940" /db_xref="CDD:186878" gene 69258..69560 /gene="yabP" /locus_tag="BAMF_0060" /db_xref="GeneID:9780456" CDS 69258..69560 /gene="yabP" /locus_tag="BAMF_0060" /function="16.13: Shape" /codon_start=1 /transl_table=11 /product="spore protein involved in the shaping of the spore coat" /protein_id="YP_003918656.1" /db_xref="GI:308171951" /db_xref="GeneID:9780456" /translation="MNSYYEQKGSSSVPEQHDVTMKGRKHLDISGVKHVESFDNEEFL LETVMGMLSVRGENLQMKNLDVEKGIVSIKGRVFDLVYLDEQQGDKAKGFFSKLFK" misc_feature 69306..69557 /gene="yabP" /locus_tag="BAMF_0060" /note="YabP family; Region: YabP; cl06766" /db_xref="CDD:195376" gene 69557..70192 /gene="yabQ" /locus_tag="BAMF_0061" /db_xref="GeneID:9780457" CDS 69557..70192 /gene="yabQ" /locus_tag="BAMF_0061" /function="16.13: Shape" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_003918657.1" /db_xref="GI:308171952" /db_xref="GeneID:9780457" /translation="MTLTTQFYTMLAMTGMGAWLGASLDTYRLFVSRAKTARWLLFVH DILFWIVQGLLFFYVLLNVNEGELRIYIFLALLLGIATYQSLFKRMYIKMLKLAIHLA VSLYQFAKKLIQHVLFRPVVLLFKLLIGLITFISLYSYRVIAFFVKCLFKIVTFLLYP LFFLLKQILKLLPEKWRLTFKRYFQKSAGFLQKSKKLIITIRSTMIRILKR" misc_feature 69560..69943 /gene="yabQ" /locus_tag="BAMF_0061" /note="Spore cortex protein YabQ (Spore_YabQ); Region: Spore_YabQ; cl09801" /db_xref="CDD:158703" gene 70210..70587 /gene="divIC" /locus_tag="BAMF_0062" /db_xref="GeneID:9780458" CDS 70210..70587 /gene="divIC" /locus_tag="BAMF_0062" /function="Septum formation initiator" /note="Cell division protein divIC;, Septum formation initiator, Septum formation initiator" /codon_start=1 /transl_table=11 /product="Cell division protein divIC" /protein_id="YP_003918658.1" /db_xref="GI:308171953" /db_xref="GeneID:9780458" /translation="MNLSRERTITEIQNDYKEQVERQSQLMKRRRKGLFRRLIVFGAL VLLTAIVLAGSLWSQTSSLSANEEKKAQLEKQVKELNGKQADLKDEISKLKDEDYVTE LARRDLFMSGNGEILFNVEKKSK" misc_feature 70231..70584 /gene="divIC" /locus_tag="BAMF_0062" /note="Septum formation initiator; Region: DivIC; cl11433" /db_xref="CDD:187037" gene 70668..71054 /gene="yabR" /locus_tag="BAMF_0063" /db_xref="GeneID:9778682" CDS 70668..71054 /gene="yabR" /locus_tag="BAMF_0063" /EC_number="2.7.-.-" /function="16.11: Scavenge (Catabolism)16.6: Maintain16.3: Control" /codon_start=1 /transl_table=11 /product="polyribonucleotide nucleotidyltransferase or phosphorylase" /protein_id="YP_003918659.1" /db_xref="GI:308171954" /db_xref="GeneID:9778682" /translation="MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVK DINEHLKVGDQVEVKVINVEKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFL KDSEDRLSSLKRNTESKRGGRGARRG" misc_feature 70668..71051 /gene="yabR" /locus_tag="BAMF_0063" /note="hypothetical protein; Provisional; Region: PRK08582" /db_xref="CDD:181488" misc_feature 70683..70889 /gene="yabR" /locus_tag="BAMF_0063" /note="S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of...; Region: S1_RPS1_repeat_hs4; cd05692" /db_xref="CDD:88447" misc_feature order(70707..70709,70731..70733,70761..70763,70767..70769) /gene="yabR" /locus_tag="BAMF_0063" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88447" gene 71209..71285 /locus_tag="BAMF__t06" /db_xref="GeneID:9780459" tRNA 71209..71285 /locus_tag="BAMF__t06" /product="tRNA-Met" /anticodon=(pos:71243..71245,aa:Met) /codon_recognized="AUG" /db_xref="GeneID:9780459" gene 71295..71366 /locus_tag="BAMF__t07" /db_xref="GeneID:9778179" tRNA 71295..71366 /locus_tag="BAMF__t07" /product="tRNA-Glu" /anticodon=(pos:71328..71330,aa:Glu) /codon_recognized="GAA" /db_xref="GeneID:9778179" gene 71568..74066 /gene="spoIIE" /locus_tag="BAMF_0064" /db_xref="GeneID:9778180" CDS 71568..74066 /gene="spoIIE" /locus_tag="BAMF_0064" /EC_number="3.1.3.16" /function="Serine phosphatase RsbU, regulator of sigma subunit" /note="Stage II sporulation protein E; Stage II sporulation protein H;, Sporulation stage II, protein E, Stage II sporulation protein E, spore_II_E: stage II sporulation protein E" /codon_start=1 /transl_table=11 /product="stage II sporulation protein E" /protein_id="YP_003918660.1" /db_xref="GI:308171955" /db_xref="GeneID:9778180" /translation="MRAMEKAERRVNGPMAGQALEKLQSFFEKAAKLAVHQAHSLFFY KGFIYVVIGFLLGRAFILSEVLPFALPFFGAMLLIRRDKAFYACLSLLAGALTISPKH SLLILTALAVFTLFSKIGTYIMQDRVKMLPIVVFFSMAAARIGFVYFESGAFTTYDYV MAVVEAGLAFILTLIFLQSLPIFTIKKVKQSLKIEEIICFMILIASVLTGLAGVSFQG MQAEHILARYVVLSFSFVGGASIGCTVGVVTGLILGLANIGNLYQMSLLAFSGLLGGL LKEGKKAGAAVGLVIGSLLISLYGEGSAGLMTTLYESLIAVALFLITPQSITKKVARY IPGTAEHSQEQQQYARKIRDVTAQKVDQFSNVFHALSESFATFHQTSSDEQAEEGEVD LFLSKITEHSCQSCYKKSKCWVQNFDKTYDLMKQVMHETEEKQYASNRRLKKEFQQHC SKSRQVEELIEDELAHHHAHLTLKRKVQDSRRLVAEQLLGVSEVMADFSREIKREREQ HFIQEEQMIEALQHFGIEIQHVEIYSLEQGNIDIEMTIPFSGGHGESEKIIAPMLSDI LEEQILVKSEQHSTHPNGYSHVAFGSTKSYRVSTGAAHAAKGGGLVSGDSYSMMELGA RKYAAAISDGMGNGARAHYESNETIKLLEKILESGIDEKIAIKTINSILSLRTTDEIY STLDLSIIDLQDASCKFLKVGSTPSFIKRGDQVMKVQASNLPIGIINEFDVEVVSEQL KAGDLLVMMSDGIFEGPKHVENHDLWMKRKMKGLKTEDPQEIADILMEEVIRTRAGQI EDDMTVVVVRIDHNTPKWASIPVPAVFQNNKEIS" misc_feature 71706..73997 /gene="spoIIE" /locus_tag="BAMF_0064" /note="stage II sporulation protein E; Region: spore_II_E; TIGR02865" /db_xref="CDD:163048" misc_feature 73434..73997 /gene="spoIIE" /locus_tag="BAMF_0064" /note="Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cl00120" /db_xref="CDD:193664" gene 74134..74871 /gene="yabS" /locus_tag="BAMF_0065" /db_xref="GeneID:9780136" CDS 74134..74871 /gene="yabS" /locus_tag="BAMF_0065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918661.1" /db_xref="GI:308171956" /db_xref="GeneID:9780136" /translation="MNKGHLNQVLLITDGCSNHGEDPIAMAAFAKEQGITVNVIGIME ENAIDQEAMKEVEGIAMAGGGVHQVVYASQLSQTVQMVTKKAMTQTLQGVVNQELKQI LGKNVEMEELSPEKRGEVMEVVDELGETVHLQVLVLVDTSASMAPKLPTVKEALIDLS ISLNSRAGHNEFAMCIFPGKSQEVELVLNWTPKLESLSALFAKLSTGGITPTGPAIRE ATQQFERIRSRRSMLADDERRFDEFGM" misc_feature <74137..74340 /gene="yabS" /locus_tag="BAMF_0065" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:197401" misc_feature 74530..>74826 /gene="yabS" /locus_tag="BAMF_0065" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cd00198" /db_xref="CDD:29222" misc_feature order(74551..74553,74761..74763) /gene="yabS" /locus_tag="BAMF_0065" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:29222" gene 74837..75838 /gene="yabT" /locus_tag="BAMF_0066" /db_xref="GeneID:9780460" CDS 74837..75838 /gene="yabT" /locus_tag="BAMF_0066" /EC_number="2.7.11.1" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="serine/threonine-protein kinase" /protein_id="YP_003918662.1" /db_xref="GI:308171957" /db_xref="GeneID:9780460" /translation="MMNDALTSLACSLAPGTAIQGKWNGKSYRLLKQLGKGANGIVYL AEASGGHVALKISSDSMSVTSEVNVLKSFSKARSQTMGPSFFDADDAFIPQLNKNVSF YVMEYIEGPLLPQYISSKGTEWIPVLMVQLLSSLSVLHQQGWVFGDLKPENLIVTGPP AAIRCIDVGGTTKQGRAIKEYTEFYDRGYWGYGTRKAEPSYDLFAVAMIMIHCVQKKE CKKTGKPKEQLRSIIEGHPFLNKYKKVLFSALNGQYPSAEAMKHDILTAGQCIGSKRK DAAKPKPPQAKPRQGTVSQTRYKPKQKPAKNNGLFETTLILISVLALYFAYIVFFLI" misc_feature 74927..>75310 /gene="yabT" /locus_tag="BAMF_0066" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" gene 75901..77361 /gene="tilS" /locus_tag="BAMF_0067" /db_xref="GeneID:9780461" CDS 75901..77361 /gene="tilS" /locus_tag="BAMF_0067" /EC_number="6.3.4.-" /function="Predicted ATPase of the PP-loop superfamily implicated in cell cycle control" /note="tRNA(Ile)-lysidine synthase; tRNA(Ile)-lysidine synthetase; tRNA(Ile)-2-lysyl-cytidine synthase;, Lysidine-tRNA(Ile) synthetase, PP-loop family, lysidine_TilS_N: tRNA(Ile)-lysidine synthetase" /codon_start=1 /transl_table=11 /product="tRNA(Ile)-lysidine synthase" /protein_id="YP_003918663.1" /db_xref="GI:308171958" /db_xref="GeneID:9780461" /translation="MYIFKKPAHREGDIVKSVEDFFKTYHLQAEGETIIAGVSGGPDS MALLSMLNKHFGKSSVIIAAHVDHQFRGSESEEDMKFVQSYCEAEHILCETVQIDVSA YAKKNKLNKQAAARDCRYQFFKDLMAKHQAKFLALAHHGDDQVETMLMRLAKGTLGAG LAGMQPVREFASGLLIRPFLYAAKDEILEYCRQERLSYRTDESNTKDDYTRNRFRKTV LPFLKQESPDVHKMFQKVSEALTEDEQYLQSLTKERMNKVITSKSDTSVEVSSSQLLA LPIPLQRRGVQLILNYLYENVPSSFSARHIQQFLEWAENGSASGVLDFPKGLKVVKSY QTCLFTFEQWQCEKVPFELQLQGAEGETAVLPNGFMIEVADQADPHITNGNAVFMTSR NKVQFPLTIRTRKIGDRIKLKGMNGSKKVKDIFIDHKLPLRDRDVWPIVTDASGEIIW LPGLKKSIFDDLVIPNSDRIVLQYRQHEKCRGQALT" misc_feature 75997..76560 /gene="tilS" /locus_tag="BAMF_0067" /note="N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992" /db_xref="CDD:30179" misc_feature order(76009..76017,76021..76032,76093..76095,76099..76101) /gene="tilS" /locus_tag="BAMF_0067" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30179" misc_feature 77095..77235 /gene="tilS" /locus_tag="BAMF_0067" /note="B3/4 domain; Region: B3_4; cl11458" /db_xref="CDD:196242" gene 77358..77897 /gene="hprT" /locus_tag="BAMF_0068" /db_xref="GeneID:9780304" CDS 77358..77897 /gene="hprT" /locus_tag="BAMF_0068" /EC_number="2.4.2.8" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="hypoxanthine-guanine phosphoribosyltransferase" /protein_id="YP_003918664.1" /db_xref="GI:308171959" /db_xref="GeneID:9780304" /translation="MKQDIEKVLISEEEIQQKVKQLGEQLTSEYSDTFPLAIGVLKGA LPFMADLIKHIDTYLEMDFMDVSSYGNSTVSSGEVKIIKDLDTSVEGRDILIIEDIID SGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDYA ERYRNLPYIGVLKPAIYES" misc_feature 77358..77879 /gene="hprT" /locus_tag="BAMF_0068" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 77995..79914 /gene="ftsH" /locus_tag="BAMF_0069" /db_xref="GeneID:9779024" CDS 77995..79914 /gene="ftsH" /locus_tag="BAMF_0069" /EC_number="3.4.24.-" /function="16.13: Shape16.9: Replicate" /codon_start=1 /transl_table=11 /product="cell-division protein and general stress protein" /protein_id="YP_003918665.1" /db_xref="GI:308171960" /db_xref="GeneID:9779024" /translation="MNRVFRNTIFYLLILLVVIGVVSYFQTSNPKTENMSYSTFIKNL DEGKVDSVSVQPVRGVYEVKGQLKKYDKDQYFLTHVPEGKGADQIFDAIKKTDVKVDP AQETSGWVTFLTTIIPFVIIFILFFFLLNQAQGGGSRVMNFGKSKAKLYTEEKKRVKF KDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLARASAGEA GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGG HDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVI GREAVLKVHARNKPLDETVNLKAIASRTPGFSGADLENLLNEAALVAARQNKKKIDMR DIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQ AGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIAR RMVTEFGMSEKLGPLQFGQSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYE RAKTILTENRDKLELIAQTLLDVETLDAEQIKHLVDHGKLPERNFSDDHLQKDDVKVN ILSKTEDEKKDEPKE" misc_feature 78061..78291 /gene="ftsH" /locus_tag="BAMF_0069" /note="FtsH Extracellular; Region: FtsH_ext; pfam06480" /db_xref="CDD:191539" misc_feature 78385..79800 /gene="ftsH" /locus_tag="BAMF_0069" /note="ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241" /db_xref="CDD:162266" misc_feature 78484..78981 /gene="ftsH" /locus_tag="BAMF_0069" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 78595..78618 /gene="ftsH" /locus_tag="BAMF_0069" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(78598..78621,78772..78774,78913..78915) /gene="ftsH" /locus_tag="BAMF_0069" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 78760..78777 /gene="ftsH" /locus_tag="BAMF_0069" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 78955..78957 /gene="ftsH" /locus_tag="BAMF_0069" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 79222..79794 /gene="ftsH" /locus_tag="BAMF_0069" /note="Peptidase family M41; Region: Peptidase_M41; pfam01434" /db_xref="CDD:144872" gene 80063..80839 /gene="coaX" /locus_tag="BAMF_0070" /db_xref="GeneID:9778842" CDS 80063..80839 /gene="coaX" /locus_tag="BAMF_0070" /EC_number="2.7.1.33" /function="transcriptional regulator, homolog of Bvg accessory factor" /note="Type III pantothenate kinase; Pantothenic acid kinase; PanK-III;, Bordetella pertussis Bvg accessory factor, Bordetella pertussis Bvg accessory factor family, baf: transcriptional activator, , Baf family" /codon_start=1 /transl_table=11 /product="Type III pantothenate kinase Pantothenic acid kinase; PanK-III" /protein_id="YP_003918666.1" /db_xref="GI:308171961" /db_xref="GeneID:9778842" /translation="MLLVIDVGNTNTVIGVYHDGELEYHWRIETSRHKTEDEFGMLLR SLFEHSGLMFEQIEGIIISSVVPPIMFSLERMCTKYFHIEPQVVGPGMKTGLNIKYDN PKEVGADRIVNAVAAIQQYGGPLIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEA LYSRAAKLPRIEIARPDNIIGKNTVSAMQSGILFGYVGQVEGIVKRMKWQAKQEPKVI ATGGLASLIANESDCIDIVDPFLTLKGLEIIYERNRVGHV" misc_feature 80063..80827 /gene="coaX" /locus_tag="BAMF_0070" /note="Bordetella pertussis Bvg accessory factor family; Region: Bvg_acc_factor; cl09130" /db_xref="CDD:195799" gene 80850..81725 /gene="yacC" /locus_tag="BAMF_0071" /db_xref="GeneID:9778524" CDS 80850..81725 /gene="yacC" /locus_tag="BAMF_0071" /function="Disulfide bond chaperones of the HSP33 family" /note="33 kDa chaperonin; Heat shock protein 33 homolog; HSP33;, Heat shock protein Hsp33 protein, Hsp33 protein" /codon_start=1 /transl_table=11 /product="33 kDa chaperonin" /protein_id="YP_003918667.1" /db_xref="GI:308171962" /db_xref="GeneID:9778524" /translation="MDYLIKAIAYDGKVRAYAARTTDMVNEAQRRHDTWPTASAAIGR TMTASLILGAMLKGEDKLTVKIEGGGPIGAIVADANAKGEVRAYVSNPHVHFDLNEQG KLDVRRAVGTDGTLSVVKDLGLRDYFTGQVEIVSGELGDDFTYYLVSSEQVPSSVGVG VLVNPDNTILAAGGFIIQLLPGTDEETISTIEKQLSQIEPISKLIQKGLTPEEILEEV LGQKPDVLETMPVKFHCSCSKDRFEAAILGLGKKEIQDMIEEDGKAEAVCHFCNEKYL FTKEELEELRDETTR" misc_feature 80850..81686 /gene="yacC" /locus_tag="BAMF_0071" /note="Hsp33-like chaperonin; Reviewed; Region: hslO; PRK00114" /db_xref="CDD:178874" misc_feature 80859..81683 /gene="yacC" /locus_tag="BAMF_0071" /note="Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat...; Region: Hsp33; cd00498" /db_xref="CDD:29605" misc_feature order(80892..80894,81285..81287,81297..81305,81381..81383, 81552..81554) /gene="yacC" /locus_tag="BAMF_0071" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29605" misc_feature order(80892..80894,81363..81365,81369..81371,81381..81392) /gene="yacC" /locus_tag="BAMF_0071" /note="domain crossover interface; other site" /db_xref="CDD:29605" misc_feature order(81552..81554,81558..81560,81651..81653,81660..81662) /gene="yacC" /locus_tag="BAMF_0071" /note="redox-dependent activation switch; other site" /db_xref="CDD:29605" gene 81771..82661 /gene="yacD" /locus_tag="BAMF_0072" /db_xref="GeneID:9780462" CDS 81771..82661 /gene="yacD" /locus_tag="BAMF_0072" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="protein secretion PrsA-like protein" /protein_id="YP_003918668.1" /db_xref="GI:308171963" /db_xref="GeneID:9780462" /translation="MKPRTLLTIIVAALLVCSVAVAYKLTKSQAAGSSEESIATIGDK HITRQDWMKKMEDEYGKSTLEDMINTQVVEKLAKKNKLTVSNSELEREFLLIKAVNNS FYEDSHITEKEWKDQIRYNILLEELLTKDIDISDKEMQSFYNKNKELYQFDDSYRIRH IVVKSKEEADRVLADLKGGSSFEAVAAERSTDRYTSQYGGDLGFVTENQENIPPAYIT EAKNLKENEWSAEPIKVSSGYAVIQLKEKLKARTFSYNEVKSQIRRQIAMDQLGDKAT VKTLWKEAGVSWFYGEKRTK" misc_feature 81882..82622 /gene="yacD" /locus_tag="BAMF_0072" /note="peptidylprolyl isomerase; Provisional; Region: prsA; PRK00059" /db_xref="CDD:178832" misc_feature 82248..82508 /gene="yacD" /locus_tag="BAMF_0072" /note="PPIC-type PPIASE domain; Region: Rotamase; cl08278" /db_xref="CDD:195679" gene 82737..83663 /gene="cysK" /locus_tag="BAMF_0073" /db_xref="GeneID:9780463" CDS 82737..83663 /gene="cysK" /locus_tag="BAMF_0073" /EC_number="2.5.1.47" /function="16.2: Construct biomass (Anabolism)16.3: Control" /codon_start=1 /transl_table=11 /product="cysteine synthase" /protein_id="YP_003918669.1" /db_xref="GI:308171964" /db_xref="GeneID:9780463" /translation="MVRIANSITELIGNTPIVKLNRLTDENSADVYLKLEYMNPGSSV KDRIGVAMIEAAEKEGKLKAGDTIIEPTSGNTGIGLAMVAAAKGLRAILVMPDTMSME RRNLLRAYGAELVLTPGAEGMKGAIKKAEELAEEHGYFVPQQFNNAANPEIHRQTTGK EIVEQFGEDQLDAFVAGIGTGGTITGAGEVLKEAYPSIKIYAVEPADSPVLSGGKPGP HKIQGIGAGFVPETLNTDIYDQIIPVKNEDAFEYARKTAKEEGILGGISSGAAIYAAL EIAKKLGKGKKVLAIIPSNGERYLSTPLYQFE" misc_feature 82758..83651 /gene="cysK" /locus_tag="BAMF_0073" /note="cysteine synthases; Region: cysKM; TIGR01136" /db_xref="CDD:162219" misc_feature 82773..83639 /gene="cysK" /locus_tag="BAMF_0073" /note="CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine...; Region: CBS_like; cd01561" /db_xref="CDD:107204" misc_feature order(82785..82793,82830..82832,82848..82850,82854..82856, 82980..82982,82989..82991,83037..83042,83049..83054, 83061..83066,83226..83231,83505..83513,83517..83525, 83595..83597,83625..83627,83634..83636) /gene="cysK" /locus_tag="BAMF_0073" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:107204" misc_feature order(82869..82871,82959..82961,83268..83285,83403..83405, 83535..83537,83613..83618) /gene="cysK" /locus_tag="BAMF_0073" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107204" misc_feature 82869..82871 /gene="cysK" /locus_tag="BAMF_0073" /note="catalytic residue [active]" /db_xref="CDD:107204" gene 83831..85243 /gene="pabB" /locus_tag="BAMF_0074" /db_xref="GeneID:9778628" CDS 83831..85243 /gene="pabB" /locus_tag="BAMF_0074" /EC_number="2.6.1.85" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxychorismate synthase" /protein_id="YP_003918670.1" /db_xref="GI:308171965" /db_xref="GeneID:9778628" /translation="MAQRRPAGRRIPFTKQAFLQQYENLSKSRKRHVLLESARGGRFS IAGLDPIASVKGKDGITTIKHEGETLFKEGDPLRAFHEWFEALGTETNDEFPDFQGGA IGFISYDYARYIENFKMLSLDDLETPDIYFLVFDDVAVYDHEEEALWLITHTESEEAE LAEEKLSGLEDMWCSLQTEDEPYSPLNRDGDGSYAAPFTEEGFSQAVEQIKQYIASGD VFQVNLSIRQSQSLSVHPYEVYKHLRNVNPSPYMAYLETPGFQVICGSPELLVTKKGK KLEMRPIAGTRSRGKDDAEDKALADELIHNEKERAEHVMLVDLERNDLGRVSRYGSVR VNEFMAIEKYSHVMHIVSNVQGELQDGYDATDIIHAVFPGGTITGAPKVRTMEIIEEL EPTRRGLYTGSIGWFGFNGDLQFNIVIRTIYAAGGHAFMQSGAGVVIDSVPKHEYKES FKKAFAMKKALELSEEETKN" misc_feature 83882..85237 /gene="pabB" /locus_tag="BAMF_0074" /note="Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]; Region: TrpE; COG0147" /db_xref="CDD:30496" misc_feature 83927..84280 /gene="pabB" /locus_tag="BAMF_0074" /note="Anthranilate synthase component I, N terminal region; Region: Anth_synt_I_N; pfam04715" /db_xref="CDD:191067" misc_feature 84425..85189 /gene="pabB" /locus_tag="BAMF_0074" /note="chorismate binding enzyme; Region: Chorismate_bind; cl10555" /db_xref="CDD:195988" gene 85259..85846 /gene="pabA" /locus_tag="BAMF_0075" /db_xref="GeneID:9779433" CDS 85259..85846 /gene="pabA" /locus_tag="BAMF_0075" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxychorismate synthase" /protein_id="YP_003918671.1" /db_xref="GI:308171966" /db_xref="GeneID:9779433" /translation="MILMIDNYDSFTYNLVQYLGELGEELIVRRNDGITIEEIEELAP DFLMISPGPCSPDEAGISLEAIKHFAGSIPIFGVCLGHQSIAQVFGGDVVRAERLMHG KTSEIMHDGQTIFNGLQNPLVATRYHSLIVKADTLPDCFTVSAQTKEGEIMAIRHNEL PIEGVQFHPESIMTSFGKEMLRNFIETHRKKEVTV" misc_feature 85259..85813 /gene="pabA" /locus_tag="BAMF_0075" /note="para-aminobenzoate synthase component II; Provisional; Region: PRK08857" /db_xref="CDD:181566" misc_feature 85262..85813 /gene="pabA" /locus_tag="BAMF_0075" /note="Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743" /db_xref="CDD:153214" misc_feature order(85409..85414,85418..85420,85493..85498,85505..85507, 85637..85648) /gene="pabA" /locus_tag="BAMF_0075" /note="glutamine binding [chemical binding]; other site" /db_xref="CDD:153214" misc_feature order(85493..85495,85760..85762,85766..85768) /gene="pabA" /locus_tag="BAMF_0075" /note="catalytic triad [active]" /db_xref="CDD:153214" gene 85843..86694 /gene="pabC" /locus_tag="BAMF_0076" /db_xref="GeneID:9779432" CDS 85843..86694 /gene="pabC" /locus_tag="BAMF_0076" /EC_number="4.1.3.38" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxychorismate pyruvate-lyase" /protein_id="YP_003918672.1" /db_xref="GI:308171967" /db_xref="GeneID:9779432" /translation="MIIYLNGQYIEEKEAALSPFDHGYLYGIGAFETFRLYSGRPFLP DAHVARLNRALRDLQIAYEVNKQELLDMLDSLLLLNDIEDGSARVRLNVSAGVSDKGF TAQTYEKPTVLCFVNRLNPEALPVQKEGKLLSVRRNTPEGSFRLKSHHYLNNMYAKQE IGNDPNLEGIFLTKEGDVAEGIVSNVFWRKGDKVFTPSLDTGILDGVTRQFVIDELKR QGTEVIEGRFRFQSMLEADEAWMTNSVLEIIPFSKIEEVPLPGADGKTVQLLRTQYQR EINKMNV" misc_feature 85903..86664 /gene="pabC" /locus_tag="BAMF_0076" /note="ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most...; Region: ADCL_like; cd01559" /db_xref="CDD:29570" misc_feature 85981..86655 /gene="pabC" /locus_tag="BAMF_0076" /note="Aminotransferase class IV; Region: Aminotran_4; pfam01063" /db_xref="CDD:189826" misc_feature order(85990..85992,86281..86283,86380..86382) /gene="pabC" /locus_tag="BAMF_0076" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:29570" misc_feature 86281..86283 /gene="pabC" /locus_tag="BAMF_0076" /note="catalytic residue [active]" /db_xref="CDD:29570" gene 86708..87565 /gene="sul" /locus_tag="BAMF_0077" /db_xref="GeneID:9779434" CDS 86708..87565 /gene="sul" /locus_tag="BAMF_0077" /EC_number="2.5.1.15" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase" /protein_id="YP_003918673.1" /db_xref="GI:308171968" /db_xref="GeneID:9779434" /translation="MAQQTIEQPKLIHTKKGALSYKEKTLIMGILNVTPDSFSDGGKY DSTERALLHAAKMAEEGAHIIDIGGESTRPGASLVSADEEMSRVIPAIERITSELDVP ISIDTYKASVADEAVKAGASIINDIWGAKGDPDMASVAAAHSVPIILMHNRKERNYND LIPDMLADLMESVKIAAEAGVSDENMILDPGIGFAKSYEDNLAVMNKLEVFSGLGYPL LLATSRKRFIGRVLDLPPEERAEGTGATVCLGVQKGCDIVRVHDVKQIARMTKMMDAM LNKGGAHHG" misc_feature 86780..87529 /gene="sul" /locus_tag="BAMF_0077" /note="DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and...; Region: DHPS; cd00739" /db_xref="CDD:29545" misc_feature 86783..87535 /gene="sul" /locus_tag="BAMF_0077" /note="dihydropteroate synthase; Region: DHPS; TIGR01496" /db_xref="CDD:162390" misc_feature order(86801..86803,87023..87025,87080..87082,87086..87088, 87155..87157,87272..87274,87368..87370,87380..87382, 87482..87484,87488..87490) /gene="sul" /locus_tag="BAMF_0077" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29545" misc_feature order(87311..87313,87323..87328,87440..87442,87452..87454, 87464..87466,87509..87514) /gene="sul" /locus_tag="BAMF_0077" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29545" misc_feature 87374..87382 /gene="sul" /locus_tag="BAMF_0077" /note="inhibitor binding site; inhibition site" /db_xref="CDD:29545" gene 87558..87920 /gene="folB" /locus_tag="BAMF_0078" /db_xref="GeneID:9780242" CDS 87558..87920 /gene="folB" /locus_tag="BAMF_0078" /EC_number="4.1.2.25" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="YP_003918674.1" /db_xref="GI:308171969" /db_xref="GeneID:9780242" /translation="MDKVYVEGMEFYGYHGVFEEENKLGQRFKVDLTAELDLSKAGQT DDLSYTINYAELYSVCRGIVEGEPVNLVETLAERIADTVLKKFEPVQQCTVKVIKPDP PIPGHYKSVAIEMTRKKS" misc_feature 87558..87911 /gene="folB" /locus_tag="BAMF_0078" /note="Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines...; Region: DHNA_DHNTPE; cd00534" /db_xref="CDD:29762" misc_feature order(87561..87593,87609..87635,87858..87863,87876..87902) /gene="folB" /locus_tag="BAMF_0078" /note="homooctamer interface [polypeptide binding]; other site" /db_xref="CDD:29762" misc_feature order(87603..87611,87618..87620,87765..87776,87852..87854, 87894..87896) /gene="folB" /locus_tag="BAMF_0078" /note="active site" /db_xref="CDD:29762" gene 87917..88420 /gene="folK" /locus_tag="BAMF_0079" /db_xref="GeneID:9778823" CDS 87917..88420 /gene="folK" /locus_tag="BAMF_0079" /EC_number="2.7.6.3" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="7, 8-dihydro-6-hydroxymethylpterinpyrophosphokinase" /protein_id="YP_003918675.1" /db_xref="GI:308171970" /db_xref="GeneID:9778823" /translation="MNNTAYIGLGSNMGDREHYLRQAVAMLSRQDGVTVSKVSSIYET DPVGYEDQDQFLNMAVEVKTALSPFDLLDVTQSIEAELGRTREIRWGPRTADLDILLY NRENIETERLIVPHPRMYERLFVLAPLKEICPQADHITISAETNQEGVRVWKQKSGVD EFVHSES" misc_feature 87929..88312 /gene="folK" /locus_tag="BAMF_0079" /note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483" /db_xref="CDD:29601" misc_feature order(87944..87946,88046..88051,88055..88057,88079..88081, 88085..88087,88130..88132,88142..88144,88151..88153, 88166..88168,88172..88174,88184..88186,88193..88195, 88202..88204,88208..88213,88253..88255,88262..88267, 88280..88282,88286..88288) /gene="folK" /locus_tag="BAMF_0079" /note="catalytic center binding site [active]" /db_xref="CDD:29601" misc_feature order(88130..88132,88142..88144,88151..88153,88166..88168, 88172..88174,88193..88195,88208..88213,88253..88255, 88262..88267,88280..88282) /gene="folK" /locus_tag="BAMF_0079" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29601" gene 88599..89600 /gene="dusB" /locus_tag="BAMF_0080" /db_xref="GeneID:9778827" CDS 88599..89600 /gene="dusB" /locus_tag="BAMF_0080" /EC_number="1.-.-.-" /function="16.3: Control16.6: Maintain16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="tRNA-dihydrouridine synthase B" /protein_id="YP_003918676.1" /db_xref="GI:308171971" /db_xref="GeneID:9778827" /translation="MFKIGDIELKNRVVLAPMAGVCNAAFRLTVKEFGAGLVCAEMVS DKAILYNNAKTMGMLFIEEREKPLSLQIFGGEKETLVEAAKFVDQNTTADIIDINMGC PVPKITKCDAGAKWLLDPNKIYEMVSAVVDAVDKPVTVKMRMGWDEDHIYAVKNAQAV ERAGGKAVALHGRTRVQMYEGTANWDIIKEVKQSLSIPVIGNGDVKTPQDAKRMLEET GVDGVMIGRAALGNPWMIYRTVQYLETGELKDEPKVREKMSVCKLHLDRLIKLKGEKV AVREMRKHAAWYLKGVRGNAEVRNGINHCEAREEFVQLLDAFTAEVEAKELQDAKVG" misc_feature 88608..89567 /gene="dusB" /locus_tag="BAMF_0080" /note="putative TIM-barrel protein, nifR3 family; Region: nifR3_yhdG; TIGR00737" /db_xref="CDD:129820" misc_feature 88632..89330 /gene="dusB" /locus_tag="BAMF_0080" /note="Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and...; Region: DUS_like_FMN; cd02801" /db_xref="CDD:73368" misc_feature order(88644..88652,88722..88724,88809..88811,88893..88895, 89019..89021,89109..89111,89202..89204,89208..89210, 89274..89279) /gene="dusB" /locus_tag="BAMF_0080" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73368" misc_feature order(88809..88811,88902..88907,89019..89021,89025..89027, 89106..89111,89115..89120,89205..89210,89277..89279) /gene="dusB" /locus_tag="BAMF_0080" /note="active site" /db_xref="CDD:73368" misc_feature order(88902..88904,89025..89027,89109..89111,89115..89117) /gene="dusB" /locus_tag="BAMF_0080" /note="catalytic residues [active]" /db_xref="CDD:73368" misc_feature order(88905..88907,89019..89021,89106..89108,89118..89120, 89205..89210) /gene="dusB" /locus_tag="BAMF_0080" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73368" gene 89690..91189 /gene="lysS" /locus_tag="BAMF_0081" /db_xref="GeneID:9778714" CDS 89690..91189 /gene="lysS" /locus_tag="BAMF_0081" /EC_number="6.1.1.6" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="lysyl-tRNA synthetase" /protein_id="YP_003918677.1" /db_xref="GI:308171972" /db_xref="GeneID:9778714" /translation="MSQEEQNHEELNDQLQVRRDKMNQLRENGIDPFGERFERTHQSQ QIIDAYQELSKEELEEKAIEVTIAGRMMTKRGKGKAGFAHLQDLEGQIQIYVRKDSVG EEQYEIFKSSDLGDVIGITGKVFKTNVGELSVKATSFELLTKALRPLPDKYHGLKDVE QRYRQRYLDLIVNPDSKQTFITRSKIIQAMRRYLDDHGYLEVETPTMHSIPGGASARP FITHHNALDMPLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIEL YEAYADYKDIMSLTENLVAHIAQEVLGSTTIQYGEEQIDLKPEWKRLHMVDAVKEATG VDFWNEMTVEEARSHAKEHGIEITNSMTVGHIINEFFEQKIEETLIQPTFIYGHPVEI SPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQRERFEAQLKEREEGNDEAH MMDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNAPSIRDVLLFPQMRHR" misc_feature 89714..91186 /gene="lysS" /locus_tag="BAMF_0081" /note="lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484" /db_xref="CDD:179044" misc_feature 89879..90199 /gene="lysS" /locus_tag="BAMF_0081" /note="LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-...; Region: LysRS_N; cd04322" /db_xref="CDD:58592" misc_feature order(89894..89899,89948..89953,90038..90040,90116..90118, 90125..90133) /gene="lysS" /locus_tag="BAMF_0081" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58592" misc_feature order(89906..89908,89912..89917,89933..89935,89966..89968, 89972..89974,90026..90028,90068..90070,90086..90088) /gene="lysS" /locus_tag="BAMF_0081" /note="putative anticodon binding site; other site" /db_xref="CDD:58592" misc_feature 90206..91180 /gene="lysS" /locus_tag="BAMF_0081" /note="Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three...; Region: LysRS_core; cd00775" /db_xref="CDD:29820" misc_feature 90302..90316 /gene="lysS" /locus_tag="BAMF_0081" /note="motif 1; other site" /db_xref="CDD:29820" misc_feature order(90398..90400,90464..90466,90470..90472,90488..90490, 90500..90502,90917..90919,90938..90940,90947..90949, 90959..90961,91115..91117) /gene="lysS" /locus_tag="BAMF_0081" /note="active site" /db_xref="CDD:29820" misc_feature 90461..90472 /gene="lysS" /locus_tag="BAMF_0081" /note="motif 2; other site" /db_xref="CDD:29820" misc_feature 91106..91117 /gene="lysS" /locus_tag="BAMF_0081" /note="motif 3; other site" /db_xref="CDD:29820" gene 91526..93063 /locus_tag="BAMF__r07" /db_xref="GeneID:9779163" rRNA 91526..93063 /locus_tag="BAMF__r07" /product="16S ribosomal RNA" /db_xref="GeneID:9779163" gene 93303..96230 /locus_tag="BAMF__r08" /db_xref="GeneID:9778150" rRNA 93303..96230 /locus_tag="BAMF__r08" /product="23S ribosomal RNA" /db_xref="GeneID:9778150" gene 96284..96398 /locus_tag="BAMF__r09" /db_xref="GeneID:9778151" rRNA 96284..96398 /locus_tag="BAMF__r09" /product="5S ribosomal RNA" /db_xref="GeneID:9778151" gene 96421..96496 /locus_tag="BAMF__t08" /db_xref="GeneID:9778152" tRNA 96421..96496 /locus_tag="BAMF__t08" /product="tRNA-Val" /anticodon=(pos:96454..96456,aa:Val) /codon_recognized="GUA" /db_xref="GeneID:9778152" gene 96502..96577 /locus_tag="BAMF__t09" /db_xref="GeneID:9778181" tRNA 96502..96577 /locus_tag="BAMF__t09" /product="tRNA-Thr" /anticodon=(pos:96535..96537,aa:Thr) /codon_recognized="ACA" /db_xref="GeneID:9778181" gene 96615..96690 /locus_tag="BAMF__t10" /db_xref="GeneID:9778182" tRNA 96615..96690 /locus_tag="BAMF__t10" /product="tRNA-Lys" /anticodon=(pos:96648..96650,aa:Lys) /codon_recognized="AAA" /db_xref="GeneID:9778182" gene 96698..96779 /locus_tag="BAMF__t11" /db_xref="GeneID:9778183" tRNA 96698..96779 /locus_tag="BAMF__t11" /product="tRNA-Leu" /anticodon=(pos:96732..96734,aa:Leu) /codon_recognized="CUA" /db_xref="GeneID:9778183" gene 96804..96878 /locus_tag="BAMF__t12" /db_xref="GeneID:9778184" tRNA 96804..96878 /locus_tag="BAMF__t12" /product="tRNA-Gly" /anticodon=(pos:96836..96838,aa:Gly) /codon_recognized="GGC" /db_xref="GeneID:9778184" gene 96893..96978 /locus_tag="BAMF__t13" /db_xref="GeneID:9778185" tRNA 96893..96978 /locus_tag="BAMF__t13" /product="tRNA-Leu" /anticodon=(pos:96927..96929,aa:Leu) /codon_recognized="UUA" /db_xref="GeneID:9778185" gene 96990..97066 /locus_tag="BAMF__t14" /db_xref="GeneID:9778186" tRNA 96990..97066 /locus_tag="BAMF__t14" /product="tRNA-Arg" /anticodon=(pos:97024..97026,aa:Arg) /codon_recognized="CGU" /db_xref="GeneID:9778186" gene 97083..97159 /locus_tag="BAMF__t15" /db_xref="GeneID:9778187" tRNA 97083..97159 /locus_tag="BAMF__t15" /product="tRNA-Pro" /anticodon=(pos:97117..97119,aa:Pro) /codon_recognized="CCA" /db_xref="GeneID:9778187" gene 97164..97239 /locus_tag="BAMF__t16" /db_xref="GeneID:9778188" tRNA 97164..97239 /locus_tag="BAMF__t16" /product="tRNA-Ala" /anticodon=(pos:97197..97199,aa:Ala) /codon_recognized="GCA" /db_xref="GeneID:9778188" gene 97413..98950 /locus_tag="BAMF__r10" /db_xref="GeneID:9778189" rRNA 97413..98950 /locus_tag="BAMF__r10" /product="16S ribosomal RNA" /db_xref="GeneID:9778189" gene 99190..102117 /locus_tag="BAMF__r11" /db_xref="GeneID:9778153" rRNA 99190..102117 /locus_tag="BAMF__r11" /product="23S ribosomal RNA" /db_xref="GeneID:9778153" gene 102171..102285 /locus_tag="BAMF__r12" /db_xref="GeneID:9778154" rRNA 102171..102285 /locus_tag="BAMF__r12" /product="5S ribosomal RNA" /db_xref="GeneID:9778154" gene 102512..102976 /gene="ctsR" /locus_tag="BAMF_0082" /db_xref="GeneID:9778155" CDS 102512..102976 /gene="ctsR" /locus_tag="BAMF_0082" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_003918678.1" /db_xref="GI:308171973" /db_xref="GeneID:9778155" /translation="MGHNISDIIEQYLKQVLDQNGKEILEIKRSEIADKFQCVPSQIN YVINTRFTSERGYIVESKRGGGGYIRIIKIKMNNEVVLINNIISQIHTHLSQAASDDI ILRLLEDGVISEREAKMMVSVMDRSVLYIDLPERDELRARMMKAMLTSLKLK" misc_feature 102518..102967 /gene="ctsR" /locus_tag="BAMF_0082" /note="Firmicute transcriptional repressor of class III stress genes (CtsR); Region: CtsR; cl01850" /db_xref="CDD:154625" gene 102990..103547 /gene="mcsA" /locus_tag="BAMF_0083" /db_xref="GeneID:9778607" CDS 102990..103547 /gene="mcsA" /locus_tag="BAMF_0083" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="activator of protein kinase McsB" /protein_id="YP_003918679.1" /db_xref="GI:308171974" /db_xref="GeneID:9778607" /translation="MICQECNERPATFHFTKVVNGEKQEVHICEQCAKENSDSYGISG NQGFSIHNLLSGLLNMESSFQNTGSQMFGYPEQGTACKKCGMTFQQLRKTGRFGCAEC YDTFYSQITPILRKVHSGNTVHAGKIPKRIGGNLHVRRQMEMLKKELESLIHQEEFEK AAQVRDQIRSLEQELKSTDSEEEQG" misc_feature 102990..103529 /gene="mcsA" /locus_tag="BAMF_0083" /note="Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]; Region: COG3880" /db_xref="CDD:33669" misc_feature 103422..103511 /gene="mcsA" /locus_tag="BAMF_0083" /note="UvrB/uvrC motif; Region: UVR; pfam02151" /db_xref="CDD:145355" gene 103547..104638 /gene="mcsB" /locus_tag="BAMF_0084" /db_xref="GeneID:9779198" CDS 103547..104638 /gene="mcsB" /locus_tag="BAMF_0084" /EC_number="2.7.3.-" /function="Arginine kinase" /note="ATP:guanido phosphotransferase GK0077;, ATP:guanido phosphotransferase, ATP:guanido phosphotransferase, C-terminal catalytic domain" /codon_start=1 /transl_table=11 /product="protein arginine kinase" /protein_id="YP_003918680.1" /db_xref="GI:308171975" /db_xref="GeneID:9779198" /translation="MSLKHFIQDALSNWMKQEGPESDIVLSSRIRLARNFENIKFPAR YTNEEASSIIQQFEDHFSGKKLPDIGQFHLIRMSEAQPLEKRVLMEKHLISPNLTESP FGGCLLSENEEVSIMLNEEDHIRIQCLFPGFQLLNAIKAANQVDDWIEEKVDYAFGEK RGYLTSCPTNVGTGLRASVMMHLPGLVLTRQMNRIIPAINQLGLVVRGIYGEGSEALG NIFQISNQITLGKSEQDIVDDLNSVAAQLIEQERSAREALYQTSKIELEDRVFRSYGV LSNCRMIESKETAKCLSDVRLGIDLGIIKGLSSNILNELMILTQPGFLQQYSGGALRP NERDVRRAALIRERLHLEMSANRQEDDSI" misc_feature 103556..104590 /gene="mcsB" /locus_tag="BAMF_0084" /note="ATP:guanido phosphotransferase; Provisional; Region: PRK01059" /db_xref="CDD:179213" misc_feature 103610..104308 /gene="mcsB" /locus_tag="BAMF_0084" /note="Phosphagen (guanidino) kinases found in bacteria; Region: bacterial_phosphagen_kinase; cd07930" /db_xref="CDD:153077" misc_feature order(103625..103627,103631..103633,103637..103639, 103820..103822,103895..103897,103919..103921, 104072..104074,104078..104086,104165..104167, 104171..104173,104177..104182,104210..104212) /gene="mcsB" /locus_tag="BAMF_0084" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:153077" misc_feature order(103907..103909,104045..104047,104183..104188) /gene="mcsB" /locus_tag="BAMF_0084" /note="phosphagen binding site; other site" /db_xref="CDD:153077" misc_feature order(104156..104200,104204..104221) /gene="mcsB" /locus_tag="BAMF_0084" /note="substrate specificity loop; other site" /db_xref="CDD:153077" gene 104635..107070 /gene="clpC" /locus_tag="BAMF_0085" /db_xref="GeneID:9779199" CDS 104635..107070 /gene="clpC" /locus_tag="BAMF_0085" /function="16.3: Control16.6: Maintain" /codon_start=1 /transl_table=11 /product="class III stress response-like ATPase, AAA+ superfamily" /protein_id="YP_003918681.1" /db_xref="GI:308171976" /db_xref="GeneID:9779199" /translation="MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEG IAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPHYTPRAKKVIELSMDEARKLGHS YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAI AEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNII LFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR FQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKA IDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRL REQVEDTKKTWKEKQGQENSEVSVEDIAMVVSSWTGVPVSKIAQTETDKLLNMESILH SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD EEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAH PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQN HKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTDIVSLMSDQLTKRLKEQDL SIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVE DGEFVVKTTAKTN" misc_feature 104638..107046 /gene="clpC" /locus_tag="BAMF_0085" /note="Clp protease ATP binding subunit; Region: clpC; CHL00095" /db_xref="CDD:177027" misc_feature 104683..104841 /gene="clpC" /locus_tag="BAMF_0085" /note="Clp amino terminal domain; Region: Clp_N; pfam02861" /db_xref="CDD:190453" misc_feature 104914..105066 /gene="clpC" /locus_tag="BAMF_0085" /note="Clp amino terminal domain; Region: Clp_N; pfam02861" /db_xref="CDD:190453" misc_feature 105184..105642 /gene="clpC" /locus_tag="BAMF_0085" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 105259..105282 /gene="clpC" /locus_tag="BAMF_0085" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(105262..105285,105472..105474,105583..105585) /gene="clpC" /locus_tag="BAMF_0085" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 105460..105477 /gene="clpC" /locus_tag="BAMF_0085" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 105634..105636 /gene="clpC" /locus_tag="BAMF_0085" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 105886..105993 /gene="clpC" /locus_tag="BAMF_0085" /note="UvrB/uvrC motif; Region: UVR; pfam02151" /db_xref="CDD:145355" misc_feature 106243..106641 /gene="clpC" /locus_tag="BAMF_0085" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 106270..106293 /gene="clpC" /locus_tag="BAMF_0085" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(106273..106296,106486..106488,106612..106614) /gene="clpC" /locus_tag="BAMF_0085" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 106474..106491 /gene="clpC" /locus_tag="BAMF_0085" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 106777..107046 /gene="clpC" /locus_tag="BAMF_0085" /note="C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431" /db_xref="CDD:192583" gene 107164..108543 /gene="radA" /locus_tag="BAMF_0086" /db_xref="GeneID:9778509" CDS 107164..108543 /gene="radA" /locus_tag="BAMF_0086" /EC_number="2.1.1.63" /function="16.6: Maintain" /codon_start=1 /transl_table=11 /product="DNA repair protein; 6-O-methylguanine-DNA methyltransferase" /protein_id="YP_003918682.1" /db_xref="GI:308171977" /db_xref="GeneID:9778509" /translation="MAKSKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETIKKAPAN RRAAFSHSVQTVQKPSPITSIETSEEPRVQTKLEEFNRVLGGGVVKGSLVLIGGDPGI GKSTLLLQVSAQLADTAGSVLYISGEESVKQTKLRADRLGINSQLLHVLSETDMEYIS SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHV TKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTE VLNPSEIFLEERSAGASGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNR VSLIMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADC FIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMVIPEANSDGWTIPKGIEVVGVANVAE ALRTSLGGS" misc_feature 107164..108522 /gene="radA" /locus_tag="BAMF_0086" /note="DNA repair protein RadA; Provisional; Region: PRK11823" /db_xref="CDD:183326" misc_feature 107185..108306 /gene="radA" /locus_tag="BAMF_0086" /note="Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121" /db_xref="CDD:29987" misc_feature 107455..107478 /gene="radA" /locus_tag="BAMF_0086" /note="Walker A motif/ATP binding site; other site" /db_xref="CDD:29987" misc_feature order(107458..107460,107470..107478,107533..107535, 107539..107541,107683..107688) /gene="radA" /locus_tag="BAMF_0086" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29987" misc_feature 107674..107685 /gene="radA" /locus_tag="BAMF_0086" /note="Walker B motif; other site" /db_xref="CDD:29987" misc_feature <108241..108537 /gene="radA" /locus_tag="BAMF_0086" /note="Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362" /db_xref="CDD:191262" gene 108547..109629 /gene="disA" /locus_tag="BAMF_0087" /db_xref="GeneID:9779627" CDS 108547..109629 /gene="disA" /locus_tag="BAMF_0087" /note="'unknown; unknown proteins from B. subtilis'" /codon_start=1 /transl_table=11 /product="DNA integrity scanning protein DisA" /protein_id="YP_003918683.1" /db_xref="GI:308171978" /db_xref="GeneID:9779627" /translation="MEKEKKGAKQELDLSAILQFVAPGTPLRAGIENVLRANTGGLIV VGYNDKVKQVVDGGFHINTSFAPAHLYELAKMDGAIILSDSGQKILYANTQLMPEATI SSSETGMRHRTAERVAKQTGCLVIAISERRNVITLYQDSMKYTLKDIGFILTKANQAI QTLEKYKTILDKTITALNALEFEELVTFSDVLSVMHRYEMVLRIKNEINMYIKELGTE GHLICLQVIELITDMEEEAALFIKDYVKEKIKDPFVLLKELQDMSSYDLLDDSILFKL LGYPASTNLDDYVLPRGYRLLNKIPRLPMPIVENVVEAFGFLPSITEATAEELDDVEG IGEVRAQKIKKGLKRLQEKHYIDRQL" misc_feature 108583..109626 /gene="disA" /locus_tag="BAMF_0087" /note="DNA integrity scanning protein DisA; Provisional; Region: PRK13482" /db_xref="CDD:184079" misc_feature 108625..108978 /gene="disA" /locus_tag="BAMF_0087" /note="DisA bacterial checkpoint controller nucleotide-binding; Region: DisA_N; pfam02457" /db_xref="CDD:190315" misc_feature 108982..109407 /gene="disA" /locus_tag="BAMF_0087" /note="DisA bacterial checkpoint controller linker region; Region: DisA-linker; pfam10635" /db_xref="CDD:151152" gene 109743..110843 /gene="yacL" /locus_tag="BAMF_0088" /db_xref="GeneID:9778680" CDS 109743..110843 /gene="yacL" /locus_tag="BAMF_0088" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918684.1" /db_xref="GI:308171979" /db_xref="GeneID:9778680" /translation="MLKRIVQAFFIIVGCVVGIFLIPELFVLSNIQDIPLITNAYTSA AIGAIIFFLISIWTTEYVINWVKWIEDSLLRAPVPDLLFGSLGLVFGLIIAYLIVNVI PLDNIPYRIFSTIIPVFLAFFLGYLGFQVGFKKKDELISLFSISARMQKKKGSGDEEQ EEQEKRLKILDTSVIIDGRIADICQTGFLEGVIVIPQFVLEELQHIADSSDVLKRNRG RRGLDILNRIQKELDITVEIYEGDFEDIQEVDSKLVKLAKLTSGVVVTNDFNLNKVCE LQKVAVLNINDLANAVKPVVLPGEEMNVQVIKDGKEHNQGVAYLDDGTMIVVEEGRNY IGKHIDVLVTSVLQTAAGRMIFAKPKLLEKAL" misc_feature 109743..110825 /gene="yacL" /locus_tag="BAMF_0088" /note="Integral membrane protein (PIN domain superfamily) [General function prediction only]; Region: COG4956" /db_xref="CDD:34564" misc_feature 110244..110624 /gene="yacL" /locus_tag="BAMF_0088" /note="PIN domain of Thermus Thermophilus Hb8, uncharacterized Bacillus subtilis YacL, and other bacterial homologs; Region: PIN_YacL; cd09877" /db_xref="CDD:189047" misc_feature order(110253..110255,110346..110348,110490..110492, 110544..110546) /gene="yacL" /locus_tag="BAMF_0088" /note="putative active site [active]" /db_xref="CDD:189047" gene 110857..111555 /gene="ispD" /locus_tag="BAMF_0089" /db_xref="GeneID:9780464" CDS 110857..111555 /gene="ispD" /locus_tag="BAMF_0089" /note="'intermediary metabolism; Metabolism of lipids'" /codon_start=1 /transl_table=11 /product="2-C-methyl-D-erythritol 4-phosphate cytidyltransferase IspD" /protein_id="YP_003918685.1" /db_xref="GI:308171980" /db_xref="GeneID:9780464" /translation="MEYVVVIPAAGQGKRMKAGKNKLFISLKGAPVIIHTLRVFESHG PCKKIILVINESEREDFRQLLAQFPIQTEVELVTGGAERQHSVYEGLKVIDKESVVLV HDGARPFVTHQHIDKLVETAEEAGAAVLAVPVKDTIKRAEGSRVAETFDRSSLWAVQT PQAFRLSLLKKAYMEAENKGFLGTDDASLVERLDGYQVSIVEGSYTNIKLTTPDDLIT AEAIMKAESGNHNV" misc_feature 110863..111513 /gene="ispD" /locus_tag="BAMF_0089" /note="CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516" /db_xref="CDD:133009" misc_feature order(110878..110880,110884..110901,110920..110922, 111094..111105,111112..111114,111166..111174, 111481..111483) /gene="ispD" /locus_tag="BAMF_0089" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133009" misc_feature order(111175..111177,111232..111234,111256..111258, 111262..111264,111313..111330,111406..111411, 111415..111420,111427..111429,111445..111456, 111466..111471) /gene="ispD" /locus_tag="BAMF_0089" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133009" gene 111548..112024 /gene="ispF" /locus_tag="BAMF_0090" /db_xref="GeneID:9779072" CDS 111548..112024 /gene="ispF" /locus_tag="BAMF_0090" /note="'intermediary metabolism; Metabolism of lipids'" /codon_start=1 /transl_table=11 /product="2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF" /protein_id="YP_003918686.1" /db_xref="GI:308171981" /db_xref="GeneID:9779072" /translation="MFRIGQGFDVHQLTEGRPLIIGGIEIPYEKGLLGHSDADVLLHT VADACLGAVGEGDIGRHFPDTDPEFKDADSFKLLQHVWNIVKEKGYVLGNIDCTIIAQ KPKMAPHIDAMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKA" misc_feature 111554..112012 /gene="ispF" /locus_tag="BAMF_0090" /note="MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid...; Region: MECDP_synthase; cd00554" /db_xref="CDD:100025" misc_feature order(111554..111559,111563..111565,111569..111571, 111575..111583,111593..111595,111698..111700, 111704..111709,111713..111718,111827..111829, 111833..111835,111839..111841,111860..111862, 111866..111868,111932..111934,111938..111943, 111950..111958,111995..111997,112001..112003, 112007..112009) /gene="ispF" /locus_tag="BAMF_0090" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100025" misc_feature order(111572..111574,111578..111580,111674..111676) /gene="ispF" /locus_tag="BAMF_0090" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:100025" misc_feature order(111716..111718,111722..111724,111848..111853, 111857..111868,111941..111949) /gene="ispF" /locus_tag="BAMF_0090" /note="CDP-binding sites; other site" /db_xref="CDD:100025" gene 112116..113567 /gene="gltX" /locus_tag="BAMF_0091" /db_xref="GeneID:9779074" CDS 112116..113567 /gene="gltX" /locus_tag="BAMF_0091" /EC_number="6.1.1.17" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA synthetase" /protein_id="YP_003918687.1" /db_xref="GI:308171982" /db_xref="GeneID:9779074" /translation="MGNEVRVRYAPSPTGHLHIGNARTALFNYLFARSQGGKFIIRIE DTDKKRNIEGGEQSQLNYLKWLGMDWDESVDVGGEYGPYRQSERNDIYKVYYEELLEK GLAYKCFCTEEELEKEREEQIARGEMPRYSGQHRNLTQEEQEQFLAEGRQPSIRFRVP EGKIIAFNDIVKGEISFESDGIGDFVIVKKDGTPTYNFAVAIDDYLMKMTHVLRGEDH ISNTPKQIMIFQAFGWDIPVFGHMTLIVNESRKKLSKRDESIIQFIEQYEELGYLPEA LFNFIGLLGWSPVGEEELFTREQFIEIFDVNRLSKSPALFDMHKLKWVNNQYVKALDL DQVVELTLPHLQKAGKVGTELSAEEQEWVHKLISLYHEQLSYGAEIVELTDLFFKDEI EYNQEAKAVLEEEQVPEVLSAFAAKLEELEEFTPEQIKASIKAVQKETGHKGKKLFMP IRVAVTGQTHGPELPQAIELIGRETAVKRLKSI" misc_feature 112116..113558 /gene="gltX" /locus_tag="BAMF_0091" /note="glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406" /db_xref="CDD:179296" misc_feature 112125..>112424 /gene="gltX" /locus_tag="BAMF_0091" /note="catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808" /db_xref="CDD:173905" misc_feature 112167..112178 /gene="gltX" /locus_tag="BAMF_0091" /note="HIGH motif; other site" /db_xref="CDD:173905" misc_feature <112680..113105 /gene="gltX" /locus_tag="BAMF_0091" /note="catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808" /db_xref="CDD:173905" misc_feature order(112701..112703,112713..112715,112755..112760, 112764..112769,112842..112847,112869..112874) /gene="gltX" /locus_tag="BAMF_0091" /note="active site" /db_xref="CDD:173905" misc_feature 112869..112883 /gene="gltX" /locus_tag="BAMF_0091" /note="KMSKS motif; other site" /db_xref="CDD:173905" gene 113774..113896 /locus_tag="BAMF_0092" /db_xref="GeneID:9778932" CDS 113774..113896 /locus_tag="BAMF_0092" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918688.1" /db_xref="GI:308171983" /db_xref="GeneID:9778932" /translation="MEPRGKSVSVMFTCRGAFFIGGKIDWSGERMGGSMCFLKC" gene 113878..114531 /gene="cysE" /locus_tag="BAMF_0093" /db_xref="GeneID:9777898" CDS 113878..114531 /gene="cysE" /locus_tag="BAMF_0093" /EC_number="2.3.1.30" /function="16.3: Control16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="serine acetyltransferase" /protein_id="YP_003918689.1" /db_xref="GI:308171984" /db_xref="GeneID:9777898" /translation="MFFKMLKEDIDTVFDQDPAARSYFEVVLTYSGLHAIWAHRIAHA LYKRRFFFLARLISQIARFFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVF QGVTLGGTGKEKGKRHPTIKDDALIATGAKVLGSITVGQGSKVGAGSVVLRDVPDFST VVGIPGKVVIQNGRKIKRDLNHQDLPDPVADRFRALEQQIFELQAELEDKKERINQK" misc_feature 113893..114378 /gene="cysE" /locus_tag="BAMF_0093" /note="serine O-acetyltransferase; Region: cysE; TIGR01172" /db_xref="CDD:188118" misc_feature <113902..113985 /gene="cysE" /locus_tag="BAMF_0093" /note="Serine acetyltransferase, N-terminal; Region: SATase_N; pfam06426" /db_xref="CDD:191519" misc_feature 114070..114372 /gene="cysE" /locus_tag="BAMF_0093" /note="Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-...; Region: LbH_SAT; cd03354" /db_xref="CDD:100045" misc_feature order(114073..114075,114079..114081,114124..114126, 114226..114228,114316..114318,114325..114327, 114331..114333) /gene="cysE" /locus_tag="BAMF_0093" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100045" misc_feature order(114121..114126,114181..114186,114202..114207, 114226..114231,114262..114264,114307..114309, 114313..114318,114325..114327,114331..114333, 114355..114357,114370..114372) /gene="cysE" /locus_tag="BAMF_0093" /note="active site" /db_xref="CDD:100045" misc_feature order(114121..114126,114202..114204,114226..114231) /gene="cysE" /locus_tag="BAMF_0093" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100045" misc_feature order(114181..114186,114202..114207,114262..114264, 114307..114309,114313..114318,114325..114327, 114331..114333,114355..114357,114370..114372) /gene="cysE" /locus_tag="BAMF_0093" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100045" gene 114528..115928 /gene="cysS" /locus_tag="BAMF_0094" /db_xref="GeneID:9778624" CDS 114528..115928 /gene="cysS" /locus_tag="BAMF_0094" /EC_number="6.1.1.16" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="cysteinyl-tRNA synthetase" /protein_id="YP_003918690.1" /db_xref="GI:308171985" /db_xref="GeneID:9778624" /translation="MTITLYNTLTRKKETFVPLEEGKVKMYVCGPTVYNYIHIGNARP AIVYDTVRNYLEYKGYDVQYVSNFTDVDDKLIKAANELGEDVPTVSERFIKAYFEDVG ALGCRKADLHPRVMENMDAIIEFVSELIKKGYAYESEGDVYFKTRAFEGYGKLSQQSI DELRSGARIRVGEKKEDALDFALWKAAKDGEISWDSPWGKGRPGWHIECSAMVKKYLG DEIDIHAGGQDLTFPHHENEIAQSEALTGKTFAKYWLHNGYINIDNEKMSKSLGNFVL VHDIIKQYDPQLLRFFMLSVHYRHPINYSEELLEKTKNAFNRLKTAYSNLNHRLISST NLTDNDDEWLAKIEEHRTAFEEAMDDDFNTANAISVWFDLAKLANYYMQEDNTADHVI KAFISMFDRIGSVLGLTLGEEELVDEEIEELIEKRNEARRNRDFALSDQIRDQLKSMN IILEDTAQGTRWKRGE" misc_feature 114528..115922 /gene="cysS" /locus_tag="BAMF_0094" /note="cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260" /db_xref="CDD:178951" misc_feature 114537..>114872 /gene="cysS" /locus_tag="BAMF_0094" /note="catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672" /db_xref="CDD:173899" misc_feature order(114612..114623,114639..114641,114645..114650, 114657..114662,114726..114728,114732..114734) /gene="cysS" /locus_tag="BAMF_0094" /note="active site" /db_xref="CDD:173899" misc_feature 114639..114650 /gene="cysS" /locus_tag="BAMF_0094" /note="HIGH motif; other site" /db_xref="CDD:173899" misc_feature <115140..115442 /gene="cysS" /locus_tag="BAMF_0094" /note="catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672" /db_xref="CDD:173899" misc_feature 115323..115337 /gene="cysS" /locus_tag="BAMF_0094" /note="KMSKS motif; other site" /db_xref="CDD:173899" misc_feature 115443..115919 /gene="cysS" /locus_tag="BAMF_0094" /note="Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020" /db_xref="CDD:196302" misc_feature order(115446..115448,115458..115460,115467..115469, 115476..115478,115488..115493,115521..115526, 115632..115634,115653..115655,115662..115664, 115671..115673) /gene="cysS" /locus_tag="BAMF_0094" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153408" misc_feature order(115476..115478,115485..115490,115521..115526, 115671..115673) /gene="cysS" /locus_tag="BAMF_0094" /note="anticodon binding site; other site" /db_xref="CDD:153408" gene 115933..116364 /gene="mrnC" /locus_tag="BAMF_0095" /db_xref="GeneID:9778631" CDS 115933..116364 /gene="mrnC" /locus_tag="BAMF_0095" /note="'unknown; unknown proteins from B. subtilis'" /codon_start=1 /transl_table=11 /product="RNase Mini-III MrnC" /protein_id="YP_003918691.1" /db_xref="GI:308171986" /db_xref="GeneID:9778631" /translation="MLQFEQIKDSKQLNGLALAYMGDAIFEIYVRHHLLKQGHTKPND LHKKASRIVSAKSQADILFRLQDESFFTEEEEAVLRRGRNAKSGTTPKNTDVQTYRHS TAFEALLGYLFLEKREERLDQLITEALQVGTSGRKTNESAT" misc_feature 115984..116322 /gene="mrnC" /locus_tag="BAMF_0095" /note="RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-...; Region: RIBOc; cd00593" /db_xref="CDD:29697" misc_feature order(115987..115989,115999..116001,116239..116241, 116248..116250) /gene="mrnC" /locus_tag="BAMF_0095" /note="active site" /db_xref="CDD:29697" misc_feature order(115987..115989,116239..116241,116248..116250) /gene="mrnC" /locus_tag="BAMF_0095" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29697" misc_feature order(115990..115995,116002..116004,116011..116016, 116023..116028,116032..116040,116065..116067, 116269..116271,116296..116298) /gene="mrnC" /locus_tag="BAMF_0095" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29697" gene 116348..117097 /gene="rlmB" /locus_tag="BAMF_0096" /db_xref="GeneID:9779276" CDS 116348..117097 /gene="rlmB" /locus_tag="BAMF_0096" /EC_number="2.1.1.-" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="23S rRNA methyltransferase" /protein_id="YP_003918692.1" /db_xref="GI:308171987" /db_xref="GeneID:9779276" /translation="MSQQHDYVIGKNAVIETLKSDRKLYKLWMAENTVKGQAQQVIEL AKKQGITIQFVPRKKLDQMVEGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLIL DELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVTNLA RTLDEMKERGIWVVGTDASAREDYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKL PMAGKVTSLNASVAAGLLMYEVYRKRNPLGE" misc_feature 116360..117079 /gene="rlmB" /locus_tag="BAMF_0096" /note="rRNA methylase, putative, group 3; Region: rRNA_methyl_3; TIGR00186" /db_xref="CDD:129290" misc_feature 116366..116557 /gene="rlmB" /locus_tag="BAMF_0096" /note="RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; pfam08032" /db_xref="CDD:149230" misc_feature 116636..117061 /gene="rlmB" /locus_tag="BAMF_0096" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene 117104..117616 /gene="yacP" /locus_tag="BAMF_0097" /db_xref="GeneID:9779940" CDS 117104..117616 /gene="yacP" /locus_tag="BAMF_0097" /function="16.6: Maintain16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="ribonuclease" /protein_id="YP_003918693.1" /db_xref="GI:308171988" /db_xref="GeneID:9779940" /translation="MDILLVDGYNMIGAWPQLKDLKANSFEEARDVLIQKMAEYQSYT GIKVIVVFDAHLVKGIEKKHTNHRVEVIFTRENETADERIEKLAQALNNIATQIHVAT SDYTEQWAIFGQGALRKSARELLREVDAIERRIQRRVSKITSEKPPGKIELSEEVLKT FEKWRRGGLD" misc_feature 117104..117604 /gene="yacP" /locus_tag="BAMF_0097" /note="YacP-like NYN domain; Region: NYN_YacP; cl01491" /db_xref="CDD:194148" gene 117715..118335 /gene="sigH" /locus_tag="BAMF_0098" /db_xref="GeneID:9780465" CDS 117715..118335 /gene="sigH" /locus_tag="BAMF_0098" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma-30 factor sigma H" /protein_id="YP_003918694.1" /db_xref="GI:308171989" /db_xref="GeneID:9780465" /translation="MQFCQLEDEQVIEKVHVGDSDALDYLITKYRNFVRAKARSYFLI GADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCITRQIITAIKTATRQKHIPLN SYVSLDKPIFDEESDRTLLDVISGAKTLNPEEMIINQEEFDDIEMKMGELLSDLERKV LVLYLDGRSYQEISDDLNRHVKSIDNALQRVKRKLEKYLEIREISM" misc_feature 117715..118329 /gene="sigH" /locus_tag="BAMF_0098" /note="RNA polymerase factor sigma-70; Validated; Region: PRK08295" /db_xref="CDD:181361" misc_feature 117790..118002 /gene="sigH" /locus_tag="BAMF_0098" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature 118165..118299 /gene="sigH" /locus_tag="BAMF_0098" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cl01055" /db_xref="CDD:197420" gene 118425..118574 /gene="rpmGB" /locus_tag="BAMF_0099" /db_xref="GeneID:9780089" CDS 118425..118574 /gene="rpmGB" /locus_tag="BAMF_0099" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L33" /protein_id="YP_003918695.1" /db_xref="GI:308171990" /db_xref="GeneID:9780089" /translation="MRKKITLACKTCGNRNYTTMKSSASAAERLEVKKYCSTCNSHTA HLETK" misc_feature 118425..118571 /gene="rpmGB" /locus_tag="BAMF_0099" /note="Ribosomal protein L33; Region: Ribosomal_L33; cl00383" /db_xref="CDD:193795" gene 118607..118786 /gene="secE" /locus_tag="BAMF_0100" /db_xref="GeneID:9779996" CDS 118607..118786 /gene="secE" /locus_tag="BAMF_0100" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit" /protein_id="YP_003918696.1" /db_xref="GI:308171991" /db_xref="GeneID:9779996" /translation="MRMMSFFKDVGKEMKKVSWPKGKELTRYTITVISTVIFFVIFFA LLDTGISQLIRLIVE" misc_feature 118607..118777 /gene="secE" /locus_tag="BAMF_0100" /note="SecE/Sec61-gamma subunits of protein translocation complex; Region: SecE; cl00481" /db_xref="CDD:193837" gene 118951..119484 /gene="nusG" /locus_tag="BAMF_0101" /db_xref="GeneID:9780074" CDS 118951..119484 /gene="nusG" /locus_tag="BAMF_0101" /function="16.3: Control16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="transcription antitermination factor" /protein_id="YP_003918697.1" /db_xref="GI:308171992" /db_xref="GeneID:9780074" /translation="MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEE ETDIKNGKKKVVKKKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLL PGEAEAILKRMGMDERKTDIDFELNETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNM FGRETPVELEFTQIDKL" misc_feature 118951..119481 /gene="nusG" /locus_tag="BAMF_0101" /note="transcription antitermination protein NusG; Validated; Region: nusG; PRK05609" /db_xref="CDD:180161" misc_feature 118960..119289 /gene="nusG" /locus_tag="BAMF_0101" /note="Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891" /db_xref="CDD:193580" misc_feature order(118969..118971,119071..119073,119131..119133, 119140..119142,119146..119148,119251..119253, 119275..119277) /gene="nusG" /locus_tag="BAMF_0101" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:193580" misc_feature 119317..119400 /gene="nusG" /locus_tag="BAMF_0101" /note="KOW (Kyprides, Ouzounis, Woese) motif; Region: KOW; smart00739" /db_xref="CDD:128978" gene 119652..120077 /gene="rplK" /locus_tag="BAMF_0102" /db_xref="GeneID:9779381" CDS 119652..120077 /gene="rplK" /locus_tag="BAMF_0102" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L11 (BL11)" /protein_id="YP_003918698.1" /db_xref="GI:308171993" /db_xref="GeneID:9779381" /translation="MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNA RTADQAGLIIPVEISVYEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKR DKVREIAETKMPDLNAADVEAAMRMVEGTARSMGIVIED" misc_feature 119652..120074 /gene="rplK" /locus_tag="BAMF_0102" /note="50S ribosomal protein L11; Validated; Region: rplK; PRK00140" /db_xref="CDD:178895" misc_feature 119676..120068 /gene="rplK" /locus_tag="BAMF_0102" /note="Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349" /db_xref="CDD:100101" misc_feature order(119679..119681,119739..119741,119871..119879, 119889..119891,119910..119912,119985..119987, 120000..120008,120018..120020,120027..120032, 120039..120044,120048..120056) /gene="rplK" /locus_tag="BAMF_0102" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:100101" misc_feature order(119679..119681,119820..119822,119826..119837, 119847..119849,119853..119858,119988..119993, 120000..120005) /gene="rplK" /locus_tag="BAMF_0102" /note="L7/L12 interface [polypeptide binding]; other site" /db_xref="CDD:100101" misc_feature order(119727..119729,119739..119741) /gene="rplK" /locus_tag="BAMF_0102" /note="putative thiostrepton binding site; other site" /db_xref="CDD:100101" misc_feature order(119928..119930,119937..119939) /gene="rplK" /locus_tag="BAMF_0102" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:100101" gene 120172..120870 /gene="rplA" /locus_tag="BAMF_0103" /db_xref="GeneID:9779973" CDS 120172..120870 /gene="rplA" /locus_tag="BAMF_0103" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L1 (BL1)" /protein_id="YP_003918699.1" /db_xref="GI:308171994" /db_xref="GeneID:9779973" /translation="MAKKGKKYVEAAKLVDRAKAYDVAEAVALTKKTNTAKFDATVEV AFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDSDYIT KIQQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGK VEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTM GPGVKVDASTFNVK" misc_feature 120238..120843 /gene="rplA" /locus_tag="BAMF_0103" /note="Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that...; Region: Ribosomal_L1; cd00403" /db_xref="CDD:88601" misc_feature order(120277..120285,120292..120294,120298..120300, 120304..120306,120310..120312,120673..120675, 120679..120681,120685..120687,120823..120828, 120832..120834) /gene="rplA" /locus_tag="BAMF_0103" /note="mRNA/rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88601" gene 121125..121625 /gene="rplJ" /locus_tag="BAMF_0104" /db_xref="GeneID:9779963" CDS 121125..121625 /gene="rplJ" /locus_tag="BAMF_0104" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L10 (BL5)" /protein_id="YP_003918700.1" /db_xref="GI:308171995" /db_xref="GeneID:9779963" /translation="MSSAIETKKVVVEEIASKLKESKSTIIVDYRGLNVSEVTELRKQ LREANVEFKVYKNTMTRRAVEQAELDGLNDVLTGPNAIAFSTEDVVAPAKVLNEFAKN HEALEIKAGVIEGKVSSVEEVKALAELPSRDGLLSMLLSVLQAPVRNLALAAKAVADQ KEEQGA" misc_feature 121137..121604 /gene="rplJ" /locus_tag="BAMF_0104" /note="Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11...; Region: Ribosomal_L10; cd05797" /db_xref="CDD:88597" misc_feature order(121146..121151,121158..121160,121290..121301, 121308..121310) /gene="rplJ" /locus_tag="BAMF_0104" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88597" misc_feature order(121392..121394,121461..121463,121470..121472, 121518..121520,121527..121532,121539..121544, 121548..121565,121569..121577,121584..121589, 121593..121598,121602..121604) /gene="rplJ" /locus_tag="BAMF_0104" /note="Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site" /db_xref="CDD:88597" gene 121667..122038 /gene="rplL" /locus_tag="BAMF_0105" /db_xref="GeneID:9779972" CDS 121667..122038 /gene="rplL" /locus_tag="BAMF_0105" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L12 (BL9)" /protein_id="YP_003918701.1" /db_xref="GI:308171996" /db_xref="GeneID:9779972" /translation="MALNIEEIIASVKEATVLELNDLVKAIEEEFGVTAAAPVAVAGG AAAGGAAEEQSEFDLILAGAGSQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIA KEEAEELKAKLEEVGASVEVK" misc_feature 121673..122032 /gene="rplL" /locus_tag="BAMF_0105" /note="Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387" /db_xref="CDD:100102" misc_feature order(121673..121675,121712..121720,121727..121732, 121739..121741,121748..121750,121793..121795, 121802..121807,121811..121819,121829..121834, 121895..121897,121901..121906,121910..121912, 121916..121921,121961..121966,121970..121972, 121979..121981) /gene="rplL" /locus_tag="BAMF_0105" /note="core dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(121682..121684,121691..121693,121703..121705, 121742..121744,121757..121759) /gene="rplL" /locus_tag="BAMF_0105" /note="peripheral dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(121724..121726,121733..121738,121748..121750, 121757..121759) /gene="rplL" /locus_tag="BAMF_0105" /note="L10 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(121868..121873,121880..121885,121892..121894, 121913..121918,121925..121927) /gene="rplL" /locus_tag="BAMF_0105" /note="L11 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(121871..121873,121883..121885,121892..121894, 121913..121918,121925..121927) /gene="rplL" /locus_tag="BAMF_0105" /note="putative EF-Tu interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(121871..121873,121880..121885,121892..121894) /gene="rplL" /locus_tag="BAMF_0105" /note="putative EF-G interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" gene 122130..122735 /gene="ybxB" /locus_tag="BAMF_0106" /db_xref="GeneID:9779974" CDS 122130..122735 /gene="ybxB" /locus_tag="BAMF_0106" /function="16.6: Maintain" /codon_start=1 /transl_table=11 /product="ribosomal RNA methyltransferase" /protein_id="YP_003918702.1" /db_xref="GI:308171997" /db_xref="GeneID:9779974" /translation="MSEHYYSEKPSVKSDKQTWSFTLRNRSYTFTSDSGVFSKKEVDF GSRVLIEAFEEPEIDGDFLDAGCGYGPIGLSLAGEFTDRTVHMIDVNERAVELSNENA EKNGIKNVRIYQSDLFSNIDSAQTFASIITNPPIRAGKKVVHAIFEKSAEHLRASGEL WIVIQKKQGGPSAVEKLKELFDEVSVVQKKKGYYIIKAKKV" misc_feature 122310..122621 /gene="ybxB" /locus_tag="BAMF_0106" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(122322..122342,122394..122399,122472..122480, 122526..122528) /gene="ybxB" /locus_tag="BAMF_0106" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 122979..126560 /gene="rpoB" /locus_tag="BAMF_0107" /db_xref="GeneID:9780500" CDS 122979..126560 /gene="rpoB" /locus_tag="BAMF_0107" /EC_number="2.7.7.6" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="RNA polymerase subunit beta" /protein_id="YP_003918703.1" /db_xref="GI:308171998" /db_xref="GeneID:9780500" /translation="MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEG LREMFQDISPIEDFTGNLSLEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLINKE TGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTA TVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLR NTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKIN KKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVLPYLENGIGFRKLYPN GGVVEDEVMLQSIKIYAPTDAEGEQTINVIGNAYIEEAIKNITPADIISSISYFFNLL HGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLIN IRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGMEVRDVHY SHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVDPETGKVTPRIDYLTA DEEDNYVVAQANAKLSDDGSFLDDSIVARFRGENTVVARNRVDYMDVSPKQVVSAATA CIPFLENDDSNRALMGANMQRQAVPLMQPEAPIVGTGMEYVSGKDSGAAVICKHPGIV ERVEAKNVWVRRYEEIDGQKVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGE ILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESE ARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVNDGDLLVGKVTPKGVTELTA EERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRVYIV QKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVL ELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRV SVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA AYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKILS SDEEEIEMRDLEDEEDAKQADGLALSGDEAPEETASPDVERDAVTKE" misc_feature 122985..126419 /gene="rpoB" /locus_tag="BAMF_0107" /note="DNA-directed RNA polymerase subunit beta; Reviewed; Region: rpoB; PRK00405" /db_xref="CDD:179007" misc_feature 123063..>123545 /gene="rpoB" /locus_tag="BAMF_0107" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl04593" /db_xref="CDD:156170" misc_feature 123396..123848 /gene="rpoB" /locus_tag="BAMF_0107" /note="RNA polymerase beta subunit; Region: RNA_pol_Rpb2_1; cl04591" /db_xref="CDD:194918" misc_feature <124116..>124640 /gene="rpoB" /locus_tag="BAMF_0107" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl04593" /db_xref="CDD:156170" misc_feature 124617..124820 /gene="rpoB" /locus_tag="BAMF_0107" /note="RNA polymerase beta subunit external 1 domain; Region: RNA_pol_Rpb2_45; pfam10385" /db_xref="CDD:192564" misc_feature <124791..126410 /gene="rpoB" /locus_tag="BAMF_0107" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653" /db_xref="CDD:73223" misc_feature order(124812..124814,124866..124874,124878..124880, 125265..125276,125283..125285,125289..125297, 125772..125774,125778..125780,125784..125786, 125850..125852,125856..125858,125865..125867, 125874..125876,125889..125891,125901..125903, 125952..125954,126033..126035,126057..126065, 126069..126071,126108..126110,126117..126125, 126129..126134,126195..126203,126213..126215, 126219..126224,126228..126230,126234..126251, 126255..126272,126282..126284,126351..126353, 126363..126365,126369..126371,126375..126380, 126384..126386,126390..126401,126405..126407) /gene="rpoB" /locus_tag="BAMF_0107" /note="RPB1 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(125154..125159,125250..125252,125256..125258, 125319..125321,125328..125330,125799..125801, 125838..125840,125919..125924,125928..125930, 126021..126023,126072..126074) /gene="rpoB" /locus_tag="BAMF_0107" /note="RPB10 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(125283..125285,125325..125327,125796..125798, 126039..126041) /gene="rpoB" /locus_tag="BAMF_0107" /note="RPB11 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(125325..125330,125340..125342,125718..125720, 125724..125726,125799..125807,125814..125816, 125820..125825,126036..126059,126063..126065) /gene="rpoB" /locus_tag="BAMF_0107" /note="RPB3 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(125340..125342,125451..125453,125457..125459, 125469..125477,125481..125483) /gene="rpoB" /locus_tag="BAMF_0107" /note="RPB12 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" gene 126623..130222 /gene="rpoC" /locus_tag="BAMF_0108" /db_xref="GeneID:9780000" CDS 126623..130222 /gene="rpoC" /locus_tag="BAMF_0108" /EC_number="2.7.7.6" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="RNA polymerase beta' subunit" /protein_id="YP_003918704.1" /db_xref="GI:308171999" /db_xref="GeneID:9780000" /translation="MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKD GLFCERIFGPTKDWECHCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVS HIWYFKGIPSRMGLVLDMSPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLD KYGNKFQASMGAEAINKLLQDIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRN SGNKPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGA PSIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGK RVDYSGRSVIVVGPHLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIER VQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADF DGDQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERAG AVGEGMVFKNTDEALLAYQNGYVHLHTRVAVAANSLKNVTFTDEQRSKLLITTVGKLV FNEILPESFPYMNEPSKSNIEEKTPDRFFLDKGADVKAVIAEQPINAPFKKGILGKII AEIFKRFHITETSKMLDRMKNLGFRYSTKAGITVGVSDIVVLDDKQEILEEAQSKVDN IMKQFRRGLITEEERYERVISIWSSAKDVIQGKLMKSLDEVNPIYMMSDSGARGNASN FTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSG YLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTEIIERLEERLIGRFARKQIKHPE TGAVLINENELIDEDKALEIVEAGIEEVWIRSAFTCNTPHGVCKRCYGRNLATGTDVE VGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELFEAHNPKGQATIS EIDGTIAEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVAEGDQITRGQVLTEGSID PKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVIDAGDTDV LPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQETTRVL TDAAIKGKRDELLGLKENVIIGKLVPAGTGMMNYRKVKPVSNVQPAEDMVPAE" misc_feature 126629..130207 /gene="rpoC" /locus_tag="BAMF_0108" /note="DNA-directed RNA polymerase subunit beta'; Provisional; Region: PRK00566" /db_xref="CDD:179068" misc_feature 126656..127615 /gene="rpoC" /locus_tag="BAMF_0108" /note="RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997" /db_xref="CDD:147265" misc_feature 127292..128122 /gene="rpoC" /locus_tag="BAMF_0108" /note="RNA polymerase Rpb1, domain 2; Region: RNA_pol_Rpb1_2; cl11591" /db_xref="CDD:196263" misc_feature 128054..128611 /gene="rpoC" /locus_tag="BAMF_0108" /note="RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983" /db_xref="CDD:147253" misc_feature 128696..128926 /gene="rpoC" /locus_tag="BAMF_0108" /note="RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000" /db_xref="CDD:147268" misc_feature 129359..130153 /gene="rpoC" /locus_tag="BAMF_0108" /note="Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655" /db_xref="CDD:132721" misc_feature order(129362..129367,129371..129373,130145..130147) /gene="rpoC" /locus_tag="BAMF_0108" /note="Rpb1 (beta') - Rpb6 (omega) interaction site [polypeptide binding]; other site" /db_xref="CDD:132721" misc_feature order(129383..129385,129395..129397,130085..130087, 130103..130105,130121..130123,130130..130135, 130145..130147) /gene="rpoC" /locus_tag="BAMF_0108" /note="Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site" /db_xref="CDD:132721" misc_feature 129428..129454 /gene="rpoC" /locus_tag="BAMF_0108" /note="G-loop; other site" /db_xref="CDD:132721" misc_feature order(129575..129577,129995..129997,130040..130045) /gene="rpoC" /locus_tag="BAMF_0108" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:132721" gene 130390..130638 /gene="rplGB" /locus_tag="BAMF_0109" /db_xref="GeneID:9780001" CDS 130390..130638 /gene="rplGB" /locus_tag="BAMF_0109" /function="16.2: Construct biomass (Anabolism)16.8: Protect" /codon_start=1 /transl_table=11 /product="alternative ribosomal protein L7A" /protein_id="YP_003918705.1" /db_xref="GI:308172000" /db_xref="GeneID:9780001" /translation="MSYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADSVLTAG VIQLAKNQNIAVCMVDSMKKLGKACGIEVGAAAVAIML" misc_feature 130390..130635 /gene="rplGB" /locus_tag="BAMF_0109" /note="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; Region: Ribosomal_L7Ae; cl00600" /db_xref="CDD:189122" gene 130754..131170 /gene="rpsL" /locus_tag="BAMF_0110" /db_xref="GeneID:9779970" CDS 130754..131170 /gene="rpsL" /locus_tag="BAMF_0110" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S12 (BS12)" /protein_id="YP_003918706.1" /db_xref="GI:308172001" /db_xref="GeneID:9779970" /translation="MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKR GVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKD LPGVRYHIVRGALDTAGVENRAQGRSKYGTKRPKAK" misc_feature 130760..131122 /gene="rpsL" /locus_tag="BAMF_0110" /note="S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368" /db_xref="CDD:48341" misc_feature order(130763..130768,130772..130777,130784..130789) /gene="rpsL" /locus_tag="BAMF_0110" /note="S17 interaction site [polypeptide binding]; other site" /db_xref="CDD:48341" misc_feature 130763..130765 /gene="rpsL" /locus_tag="BAMF_0110" /note="S8 interaction site; other site" /db_xref="CDD:48341" misc_feature order(130787..130795,130829..130831,130874..130879, 130883..130885,130928..130933,130937..130945, 130964..130966,130988..130990,130997..131002, 131039..131044,131054..131059,131120..131122) /gene="rpsL" /locus_tag="BAMF_0110" /note="16S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:48341" misc_feature order(130919..130924,131054..131056) /gene="rpsL" /locus_tag="BAMF_0110" /note="streptomycin interaction site [chemical binding]; other site" /db_xref="CDD:48341" misc_feature 130922..130927 /gene="rpsL" /locus_tag="BAMF_0110" /note="23S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:48341" misc_feature order(130925..130942,131000..131026) /gene="rpsL" /locus_tag="BAMF_0110" /note="aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site" /db_xref="CDD:48341" gene 131210..131680 /gene="rpsG" /locus_tag="BAMF_0111" /db_xref="GeneID:9780014" CDS 131210..131680 /gene="rpsG" /locus_tag="BAMF_0111" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S7 (BS7)" /protein_id="YP_003918707.1" /db_xref="GI:308172002" /db_xref="GeneID:9780014" /translation="MPRKGPVAKRDVLPDPLYNSKLVSRLINKMMIDGKKGKSQTILY KSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLR WLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW" misc_feature 131210..131677 /gene="rpsG" /locus_tag="BAMF_0111" /note="Ribosomal protein S7p/S5e; Region: Ribosomal_S7; cl00313" /db_xref="CDD:193762" gene 131733..133811 /gene="fusA" /locus_tag="BAMF_0112" /db_xref="GeneID:9780009" CDS 131733..133811 /gene="fusA" /locus_tag="BAMF_0112" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="elongation factor G" /protein_id="YP_003918708.1" /db_xref="GI:308172003" /db_xref="GeneID:9780009" /translation="MAREFSLEKTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETH EGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTVEVERSLRVLDGA VAVLDAQSGVEPQTETVWRQATTYGVPRVVFVNKMDKIGADFLYSVGTLRDRLQANAH AIQLPIGAEDNFEGIIDLVENVAYFYEDDLGTRSDAKEIPEEYKEQAEELRSSLIEAV AELDEELMEKYLEGEEITIPELKAAIRKGTLNVEFYPVLVGSAFKNKGVQLVLDAVLD YLPAPTDVAAIKGVRPDTDEEIVRHSSDEEPFSALAFKVMTDPYVGKLTFFRVYSGTL DSGSYVKNSTKGKRERVGRILQMHANSREEISTVYAGDIAAAVGLKDTSTGDTLCDEK DLVILESMEFPEPVIDVAIEPKSKADQDKMGIALAKLAEEDPTFRTQTNPETGQTIIS GMGELHLDIIVDRMKREFKVEANVGAPQVAYRETFRTGAKVEGKFVRQSGGRGQFGHV WIEFEPNEEGAGFEFENAIVGGVVPREYIPAVQAGLEDSLENGVLAGFPLIDIKAKLF DGSYHDVDSNEMAFKVAASMALKNAVSKCNPVLLEPIMKVEVVIPEEYMGDIMGDVTS RRGRVEGMEARGNAQVVRAMVPLAEMFGYATALRSNTQGRGTFTMFMDHYEEVPKSIA EEIIKKNKGE" misc_feature 131733..133805 /gene="fusA" /locus_tag="BAMF_0112" /note="elongation factor G; Reviewed; Region: PRK00007" /db_xref="CDD:178789" misc_feature 131766..132575 /gene="fusA" /locus_tag="BAMF_0112" /note="Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved...; Region: EF-G; cd01886" /db_xref="CDD:133286" misc_feature 131781..131804 /gene="fusA" /locus_tag="BAMF_0112" /note="G1 box; other site" /db_xref="CDD:133286" misc_feature order(131784..131786,131790..131792,131802..131807, 131814..131816,131823..131828,131928..131933, 131985..131990,132057..132062,132168..132170, 132180..132182) /gene="fusA" /locus_tag="BAMF_0112" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133286" misc_feature order(131790..131792,131796..131807,132135..132140, 132144..132146,132510..132518) /gene="fusA" /locus_tag="BAMF_0112" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133286" misc_feature 131871..131930 /gene="fusA" /locus_tag="BAMF_0112" /note="Switch I region; other site" /db_xref="CDD:133286" misc_feature 131916..131918 /gene="fusA" /locus_tag="BAMF_0112" /note="G2 box; other site" /db_xref="CDD:133286" misc_feature 131973..131984 /gene="fusA" /locus_tag="BAMF_0112" /note="G3 box; other site" /db_xref="CDD:133286" misc_feature 131979..132035 /gene="fusA" /locus_tag="BAMF_0112" /note="Switch II region; other site" /db_xref="CDD:133286" misc_feature 132135..132146 /gene="fusA" /locus_tag="BAMF_0112" /note="G4 box; other site" /db_xref="CDD:133286" misc_feature 132510..132518 /gene="fusA" /locus_tag="BAMF_0112" /note="G5 box; other site" /db_xref="CDD:133286" misc_feature 132654..132902 /gene="fusA" /locus_tag="BAMF_0112" /note="EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide...; Region: EFG_mtEFG_II; cd04088" /db_xref="CDD:58095" misc_feature 133173..133520 /gene="fusA" /locus_tag="BAMF_0112" /note="EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor...; Region: EFG_mtEFG1_IV; cd01434" /db_xref="CDD:58274" misc_feature 133533..133766 /gene="fusA" /locus_tag="BAMF_0112" /note="EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor...; Region: EFG_mtEFG_C; cd03713" /db_xref="CDD:58065" gene 133931..135121 /gene="tufA" /locus_tag="BAMF_0113" /db_xref="GeneID:9778850" CDS 133931..135121 /gene="tufA" /locus_tag="BAMF_0113" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="elongation factor Tu" /protein_id="YP_003918709.1" /db_xref="GI:308172004" /db_xref="GeneID:9778850" /translation="MAKEKFDRSKSHANIGTIGHVDHGKTTLTAAISTVLHKKSGKGT AMAYDQIDGAPEERERGITISTAHVEYETDTRHYAHVDCPGHADYVKNMITGAAQMDG AILVVSAADGPMPQTREHILLSKNVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLS EYDFPGDDVPVVKGSALKALEGDAEYEEKILELMAAVDEYIPTPERDTEKPFMMPVED VFSITGRGTVATGRVERGQVKVGDEVEIIGLQEENSKTTVTGVEMFRKLLDYAEAGDN IGALLRGVAREDIQRGQVLAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFY FRTTDVTGIINLPEGVEMVMPGDNTEMIVELISTIAIEEGTRFSIREGGRTVGSGVVS TITE" misc_feature 133931..135067 /gene="tufA" /locus_tag="BAMF_0113" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:178823" misc_feature 133964..134542 /gene="tufA" /locus_tag="BAMF_0113" /note="EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors; Region: EF_Tu; cd01884" /db_xref="CDD:133284" misc_feature 133985..134008 /gene="tufA" /locus_tag="BAMF_0113" /note="G1 box; other site" /db_xref="CDD:133284" misc_feature order(133988..133990,133994..133996,134006..134011, 134018..134020,134027..134032,134042..134044, 134129..134134,134186..134191,134258..134263, 134267..134278,134285..134287,134378..134380, 134390..134392,134468..134473) /gene="tufA" /locus_tag="BAMF_0113" /note="GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133284" misc_feature order(133994..134011,134072..134074,134339..134344, 134348..134350,134453..134461) /gene="tufA" /locus_tag="BAMF_0113" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133284" misc_feature 134099..134131 /gene="tufA" /locus_tag="BAMF_0113" /note="Switch I region; other site" /db_xref="CDD:133284" misc_feature 134117..134119 /gene="tufA" /locus_tag="BAMF_0113" /note="G2 box; other site" /db_xref="CDD:133284" misc_feature 134174..134185 /gene="tufA" /locus_tag="BAMF_0113" /note="G3 box; other site" /db_xref="CDD:133284" misc_feature 134180..134236 /gene="tufA" /locus_tag="BAMF_0113" /note="Switch II region; other site" /db_xref="CDD:133284" misc_feature 134339..134350 /gene="tufA" /locus_tag="BAMF_0113" /note="G4 box; other site" /db_xref="CDD:133284" misc_feature 134453..134461 /gene="tufA" /locus_tag="BAMF_0113" /note="G5 box; other site" /db_xref="CDD:133284" misc_feature 134564..134827 /gene="tufA" /locus_tag="BAMF_0113" /note="EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697" /db_xref="CDD:58088" misc_feature 134834..135067 /gene="tufA" /locus_tag="BAMF_0113" /note="Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts)...; Region: EFTU_III; cd03707" /db_xref="CDD:58073" misc_feature order(134870..134872,134876..134884,134936..134938, 135056..135064) /gene="tufA" /locus_tag="BAMF_0113" /note="Antibiotic Binding Site [chemical binding]; other site" /db_xref="CDD:58073" gene 135225..136187 /gene="ybaC" /locus_tag="BAMF_0114" /db_xref="GeneID:9780352" CDS 135225..136187 /gene="ybaC" /locus_tag="BAMF_0114" /EC_number="3.4.11.5" /function="16.11: Scavenge (Catabolism)16.6: Maintain" /codon_start=1 /transl_table=11 /product="proline iminopeptidase" /protein_id="YP_003918710.1" /db_xref="GI:308172005" /db_xref="GeneID:9780352" /translation="MIDNFKTKRISMLQQLLINDSEQTIMINGDDKSNPLLLFLHGGP GTPQIGYARKYQSELEKHFTVVNWDQRGAGLSYSNEIPGSSMTLDQLTADTIHLTERL CKQFNRQKIYIAGYSWGSVLALHVLQERPDLYDGYIGISQVVNIQKEETEAYRLLTDW SEERKHRLLQKTLRFIGAPPWNSQLQRSLFLLCIEMKGGGFTHNPIGALKAGGRMLFG EPYGVRGSFLAARGQMFSLKHLWEDLIFFDAGQSVSSIEIPCCFMSGRFDLTVPGTIS YEYYQKVEAPYKEWHWFENSAHSPHLEEPDRFAEVVSRFASFHL" misc_feature 135333..136157 /gene="ybaC" /locus_tag="BAMF_0114" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 136436..136744 /gene="rpsJ" /locus_tag="BAMF_0115" /db_xref="GeneID:9780468" CDS 136436..136744 /gene="rpsJ" /locus_tag="BAMF_0115" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S10 (BS13)" /protein_id="YP_003918711.1" /db_xref="GI:308172006" /db_xref="GeneID:9780468" /translation="MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPT EKSVYTILRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL " misc_feature 136436..136741 /gene="rpsJ" /locus_tag="BAMF_0115" /note="Ribosomal protein S10p/S20e; Region: Ribosomal_S10; cl00314" /db_xref="CDD:193763" gene 136784..137413 /gene="rplC" /locus_tag="BAMF_0116" /db_xref="GeneID:9780012" CDS 136784..137413 /gene="rplC" /locus_tag="BAMF_0116" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L3 (BL3)" /protein_id="YP_003918712.1" /db_xref="GI:308172007" /db_xref="GeneID:9780012" /translation="MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAEND GYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVDMDAYEIGQEVKVEIF SAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLL PGRMGGDQITVQNLEVVKVDAERNLLLIKGNVPGARKALITVKSAVKSK" misc_feature 136784..137410 /gene="rplC" /locus_tag="BAMF_0116" /note="Ribosomal protein L3; Region: Ribosomal_L3; cl00324" /db_xref="CDD:189082" gene 137441..138064 /gene="rplD" /locus_tag="BAMF_0117" /db_xref="GeneID:9779965" CDS 137441..138064 /gene="rplD" /locus_tag="BAMF_0117" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L4" /protein_id="YP_003918713.1" /db_xref="GI:308172008" /db_xref="GeneID:9779965" /translation="MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASL RQGSHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLP KKVRRLAIKSVLSSKVNDNNIIVLEDLTLDTVKTKEMAAILKGLSVEKKALIVTADAN EAVSLSARNIPGVTVVQANGINVLDVVNHEKLLITKAAVEKVEEVLA" misc_feature 137444..138061 /gene="rplD" /locus_tag="BAMF_0117" /note="Ribosomal protein L4/L1 family; Region: Ribosomal_L4; cl00325" /db_xref="CDD:197406" gene 138064..138351 /gene="rplW" /locus_tag="BAMF_0118" /db_xref="GeneID:9779966" CDS 138064..138351 /gene="rplW" /locus_tag="BAMF_0118" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L23" /protein_id="YP_003918714.1" /db_xref="GI:308172009" /db_xref="GeneID:9779966" /translation="MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVE SIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA" misc_feature 138076..138348 /gene="rplW" /locus_tag="BAMF_0118" /note="Ribosomal protein L23; Region: Ribosomal_L23; cl00326" /db_xref="CDD:185908" gene 138383..139216 /gene="rplB" /locus_tag="BAMF_0119" /db_xref="GeneID:9779985" CDS 138383..139216 /gene="rplB" /locus_tag="BAMF_0119" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L2 (BL2)" /protein_id="YP_003918715.1" /db_xref="GI:308172010" /db_xref="GeneID:9779985" /translation="MAIKKYKPTSNGRRGMTTSDFAEITTDQPEKSLLAPLHKKGGRN NQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYVDGEKR YILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGT SAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINVGKAGRSRWKGIRP TVRGSVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTLGFKTRKKKNKSDKFIVRRRKN K" misc_feature 138383..139213 /gene="rplB" /locus_tag="BAMF_0119" /note="50S ribosomal protein L2; Validated; Region: rplB; PRK09374" /db_xref="CDD:181807" misc_feature 138506..138736 /gene="rplB" /locus_tag="BAMF_0119" /note="Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181" /db_xref="CDD:109247" misc_feature 138752..139141 /gene="rplB" /locus_tag="BAMF_0119" /note="Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947" /db_xref="CDD:146530" gene 139274..139552 /gene="rpsS" /locus_tag="BAMF_0120" /db_xref="GeneID:9779964" CDS 139274..139552 /gene="rpsS" /locus_tag="BAMF_0120" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S19 (BS19)" /protein_id="YP_003918716.1" /db_xref="GI:308172011" /db_xref="GeneID:9779964" /translation="MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQF IGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTYKGHASDDKKTRR" misc_feature 139274..139549 /gene="rpsS" /locus_tag="BAMF_0120" /note="Ribosomal protein S19; Region: Ribosomal_S19; cl00350" /db_xref="CDD:185929" gene 139569..139910 /gene="rplV" /locus_tag="BAMF_0121" /db_xref="GeneID:9780022" CDS 139569..139910 /gene="rplV" /locus_tag="BAMF_0121" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L22 (BL17)" /protein_id="YP_003918717.1" /db_xref="GI:308172012" /db_xref="GeneID:9780022" /translation="MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAAS PIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSH ITIVVSEKKEG" misc_feature 139575..139889 /gene="rplV" /locus_tag="BAMF_0121" /note="Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336" /db_xref="CDD:48343" misc_feature order(139575..139580,139644..139652,139656..139661, 139665..139670,139731..139748,139773..139790, 139884..139889) /gene="rplV" /locus_tag="BAMF_0121" /note="putative translocon binding site; other site" /db_xref="CDD:48343" misc_feature order(139584..139586,139590..139592,139599..139601, 139605..139613,139620..139622,139632..139634, 139641..139643,139725..139727,139737..139739, 139746..139748,139785..139787,139791..139799, 139803..139805,139812..139814,139848..139865) /gene="rplV" /locus_tag="BAMF_0121" /note="protein-rRNA interface [nucleotide binding]; other site" /db_xref="CDD:48343" gene 139914..140570 /gene="rpsC" /locus_tag="BAMF_0122" /db_xref="GeneID:9779984" CDS 139914..140570 /gene="rpsC" /locus_tag="BAMF_0122" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S3 (BS3)" /protein_id="YP_003918718.1" /db_xref="GI:308172013" /db_xref="GeneID:9779984" /translation="MGQKVNPVGLRIGVIRDWESKWYAGKDYADFLHEDLKIREFISK RLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINI LEIKRADLDAQLVADNIARQLENRISFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGAD IARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTKKKTEEGGK " misc_feature 139914..140567 /gene="rpsC" /locus_tag="BAMF_0122" /note="30S ribosomal protein S3; Reviewed; Region: rpsC; PRK00310" /db_xref="CDD:178972" misc_feature 139917..140234 /gene="rpsC" /locus_tag="BAMF_0122" /note="K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The...; Region: 30S_S3_KH; cd02412" /db_xref="CDD:48410" misc_feature 140142..140153 /gene="rpsC" /locus_tag="BAMF_0122" /note="G-X-X-G motif; other site" /db_xref="CDD:48410" misc_feature 140265..140516 /gene="rpsC" /locus_tag="BAMF_0122" /note="Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189" /db_xref="CDD:189441" gene 140572..141006 /gene="rplP" /locus_tag="BAMF_0123" /db_xref="GeneID:9780005" CDS 140572..141006 /gene="rplP" /locus_tag="BAMF_0123" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L16" /protein_id="YP_003918719.1" /db_xref="GI:308172014" /db_xref="GeneID:9780005" /translation="MLLPKRVKYRREHRGKMRGRAKGGTEVHFGEYGIQALEASWITN RQIEAARIAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKV LFEISGVSEEVAREALRLASHKLPIKTKFVKREEIGGESNES" misc_feature 140638..140967 /gene="rplP" /locus_tag="BAMF_0123" /note="Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433" /db_xref="CDD:88606" misc_feature order(140638..140640,140644..140649,140656..140658, 140704..140709,140716..140718,140725..140727, 140737..140739,140746..140748,140764..140772, 140776..140778,140782..140784,140794..140799, 140818..140832,140872..140874,140926..140931, 140938..140943) /gene="rplP" /locus_tag="BAMF_0123" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88606" misc_feature 140683..140688 /gene="rplP" /locus_tag="BAMF_0123" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88606" misc_feature order(140719..140727,140734..140739) /gene="rplP" /locus_tag="BAMF_0123" /note="putative antibiotic binding site [chemical binding]; other site" /db_xref="CDD:88606" misc_feature order(140746..140748,140755..140760,140764..140766, 140890..140892) /gene="rplP" /locus_tag="BAMF_0123" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:88606" misc_feature order(140812..140817,140824..140829) /gene="rplP" /locus_tag="BAMF_0123" /note="L27 interface [polypeptide binding]; other site" /db_xref="CDD:88606" gene 140996..141196 /gene="rpmC" /locus_tag="BAMF_0124" /db_xref="GeneID:9779978" CDS 140996..141196 /gene="rpmC" /locus_tag="BAMF_0124" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L29" /protein_id="YP_003918720.1" /db_xref="GI:308172015" /db_xref="GeneID:9779978" /translation="MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENTARIR EVRKAIARMKTVIREREIAANK" misc_feature 141005..141175 /gene="rpmC" /locus_tag="BAMF_0124" /note="Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where...; Region: Ribosomal_L29_HIP; cd00427" /db_xref="CDD:88602" misc_feature order(141005..141007,141014..141016,141116..141118, 141146..141151,141155..141160,141170..141172) /gene="rpmC" /locus_tag="BAMF_0124" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88602" misc_feature order(141005..141013,141017..141019,141029..141034, 141038..141043,141050..141055,141062..141067, 141074..141076,141083..141088,141110..141112, 141119..141121,141131..141133,141140..141145, 141152..141157,141164..141166) /gene="rpmC" /locus_tag="BAMF_0124" /note="putative translocon interaction site; other site" /db_xref="CDD:88602" misc_feature order(141053..141055,141065..141067,141074..141076, 141086..141088,141131..141133) /gene="rpmC" /locus_tag="BAMF_0124" /note="signal recognition particle (SRP54) interaction site; other site" /db_xref="CDD:88602" misc_feature order(141071..141073,141080..141085) /gene="rpmC" /locus_tag="BAMF_0124" /note="L23 interface [polypeptide binding]; other site" /db_xref="CDD:88602" misc_feature 141092..141097 /gene="rpmC" /locus_tag="BAMF_0124" /note="trigger factor interaction site; other site" /db_xref="CDD:88602" gene 141219..141482 /gene="rpsQ" /locus_tag="BAMF_0125" /db_xref="GeneID:9779989" CDS 141219..141482 /gene="rpsQ" /locus_tag="BAMF_0125" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S17 (BS16)" /protein_id="YP_003918721.1" /db_xref="GI:308172016" /db_xref="GeneID:9779989" /translation="MSERNQRKVYQGRVVSDKMDKTITVVVETYKKDPIYGKRVKYSK KLKAHDENNQAKIGDIVKVMETRPLSATKRFRLVEVVEEAVII" misc_feature 141225..141473 /gene="rpsQ" /locus_tag="BAMF_0125" /note="Ribosomal protein S17; Region: Ribosomal_S17; cl00351" /db_xref="CDD:189087" gene 141524..141892 /gene="rplNA" /locus_tag="BAMF_0126" /db_xref="GeneID:9780020" CDS 141524..141892 /gene="rplNA" /locus_tag="BAMF_0126" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L14" /protein_id="YP_003918722.1" /db_xref="GI:308172017" /db_xref="GeneID:9780020" /translation="MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVK QATPGGVVKKGEVVRAVIVRTKSGARRSDGSYISFDENACVIIRDDKSPRGTRIFGPV ARELRENNFMKIVSLAPEVI" misc_feature 141524..141889 /gene="rplNA" /locus_tag="BAMF_0126" /note="Ribosomal protein L14p/L23e; Region: Ribosomal_L14; cl00328" /db_xref="CDD:193771" gene 141929..142240 /gene="rplX" /locus_tag="BAMF_0127" /db_xref="GeneID:9779976" CDS 141929..142240 /gene="rplX" /locus_tag="BAMF_0127" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L24 (BL23)" /protein_id="YP_003918723.1" /db_xref="GI:308172018" /db_xref="GeneID:9779976" /translation="MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKH SKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRIAKKSGQVLD K" misc_feature 141929..142234 /gene="rplX" /locus_tag="BAMF_0127" /note="KOW motif; Region: KOW; cl00354" /db_xref="CDD:185933" gene 142267..142806 /gene="rplE" /locus_tag="BAMF_0128" /db_xref="GeneID:9779986" CDS 142267..142806 /gene="rplE" /locus_tag="BAMF_0128" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L5 (BL6)" /protein_id="YP_003918724.1" /db_xref="GI:308172019" /db_xref="GeneID:9779986" /translation="MNRLKEKYNKEISPALMTKFNYDSVMQVPKIEKIVINMGVGDAV QNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDK LISVSLPRVRDFRGISKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTA NSDEEARELLTLVGMPFQK" misc_feature 142267..142803 /gene="rplE" /locus_tag="BAMF_0128" /note="50S ribosomal protein L5; Validated; Region: rplE; PRK00010" /db_xref="CDD:178791" misc_feature 142336..142506 /gene="rplE" /locus_tag="BAMF_0128" /note="Ribosomal protein L5; Region: Ribosomal_L5; pfam00281" /db_xref="CDD:109342" misc_feature 142516..142797 /gene="rplE" /locus_tag="BAMF_0128" /note="ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673" /db_xref="CDD:144317" gene 142829..143014 /gene="rpsNA" /locus_tag="BAMF_0129" /db_xref="GeneID:9779967" CDS 142829..143014 /gene="rpsNA" /locus_tag="BAMF_0129" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S14" /protein_id="YP_003918725.1" /db_xref="GI:308172020" /db_xref="GeneID:9779967" /translation="MAKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICF RELAYKGQIPGVKKASW" misc_feature 142829..143011 /gene="rpsNA" /locus_tag="BAMF_0129" /note="Ribosomal protein S14p/S29e; Region: Ribosomal_S14; cl00355" /db_xref="CDD:193782" gene 143046..143444 /gene="rpsH" /locus_tag="BAMF_0130" /db_xref="GeneID:9780017" CDS 143046..143444 /gene="rpsH" /locus_tag="BAMF_0130" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S8 (BS8)" /protein_id="YP_003918726.1" /db_xref="GI:308172021" /db_xref="GeneID:9780017" /translation="MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIADILKREG FIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLG IAIISTSQGVLTDKEARAKQAGGEVLAYVW" misc_feature 143049..143441 /gene="rpsH" /locus_tag="BAMF_0130" /note="Ribosomal protein S8; Region: Ribosomal_S8; cl00330" /db_xref="CDD:185911" gene 143476..144015 /gene="rplF" /locus_tag="BAMF_0131" /db_xref="GeneID:9780010" CDS 143476..144015 /gene="rplF" /locus_tag="BAMF_0131" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L6 (BL8)" /protein_id="YP_003918727.1" /db_xref="GI:308172022" /db_xref="GeneID:9780010" /translation="MSRVGKKLLEIPSEVTVTLNEGNTVAVKGAKGELTRTFHPDMEI KIEDNVLTVTRPSDHKEHRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGN KLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKG KGIRYEGEVVRRKEGKSAK" misc_feature 143476..144012 /gene="rplF" /locus_tag="BAMF_0131" /note="50S ribosomal protein L6; Validated; Region: rplF; PRK05498" /db_xref="CDD:180118" misc_feature 143506..143724 /gene="rplF" /locus_tag="BAMF_0131" /note="Ribosomal protein L6; Region: Ribosomal_L6; pfam00347" /db_xref="CDD:109407" misc_feature 143746..143970 /gene="rplF" /locus_tag="BAMF_0131" /note="Ribosomal protein L6; Region: Ribosomal_L6; pfam00347" /db_xref="CDD:109407" gene 144049..144411 /gene="rplR" /locus_tag="BAMF_0132" /db_xref="GeneID:9779968" CDS 144049..144411 /gene="rplR" /locus_tag="BAMF_0132" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L18" /protein_id="YP_003918728.1" /db_xref="GI:308172023" /db_xref="GeneID:9779968" /translation="MITKTSKNAARQKRHARVRAKLSGTAERPRLNVFRSNKHIYAQI IDDVNGVTLVSASTLDKDLNVESTGDSAAAAKVGELVAKRASEKGVSDVVFDRGGYLY HGRVKALADAAREAGLKF" misc_feature 144103..144402 /gene="rplR" /locus_tag="BAMF_0132" /note="Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432" /db_xref="CDD:88603" misc_feature order(144106..144108,144112..144117,144121..144123, 144136..144138,144148..144165,144169..144171, 144175..144177,144196..144204,144211..144213, 144328..144330,144361..144363) /gene="rplR" /locus_tag="BAMF_0132" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88603" misc_feature order(144106..144108,144115..144120) /gene="rplR" /locus_tag="BAMF_0132" /note="L27 interface [polypeptide binding]; other site" /db_xref="CDD:88603" misc_feature order(144109..144114,144331..144333,144340..144342, 144388..144390) /gene="rplR" /locus_tag="BAMF_0132" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88603" misc_feature 144346..144348 /gene="rplR" /locus_tag="BAMF_0132" /note="L5 interface [polypeptide binding]; other site" /db_xref="CDD:88603" gene 144430..144936 /gene="rpsE" /locus_tag="BAMF_0133" /db_xref="GeneID:9779980" CDS 144430..144936 /gene="rpsE" /locus_tag="BAMF_0133" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S5" /protein_id="YP_003918729.1" /db_xref="GI:308172024" /db_xref="GeneID:9779980" /translation="MIMRRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDK NGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPAS EGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEEVAKLRG KSVEELLG" misc_feature 144430..144933 /gene="rpsE" /locus_tag="BAMF_0133" /note="30S ribosomal protein S5; Validated; Region: rpsE; PRK00550" /db_xref="CDD:179061" misc_feature 144463..144660 /gene="rpsE" /locus_tag="BAMF_0133" /note="Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333" /db_xref="CDD:144065" misc_feature 144688..144909 /gene="rpsE" /locus_tag="BAMF_0133" /note="Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719" /db_xref="CDD:190724" gene 144950..145129 /gene="rpmD" /locus_tag="BAMF_0134" /db_xref="GeneID:9780007" CDS 144950..145129 /gene="rpmD" /locus_tag="BAMF_0134" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L30 (BL27)" /protein_id="YP_003918730.1" /db_xref="GI:308172025" /db_xref="GeneID:9780007" /translation="MAKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIR GMINKVSHLVSVKEQ" misc_feature 144959..145117 /gene="rpmD" /locus_tag="BAMF_0134" /note="Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins...; Region: Ribosomal_L30; cd01658" /db_xref="CDD:100100" misc_feature order(144977..144982,144986..144991,144995..145003, 145010..145015,145022..145030,145034..145036, 145043..145045,145058..145063,145070..145078, 145082..145087) /gene="rpmD" /locus_tag="BAMF_0134" /note="23S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:100100" gene 145160..145600 /gene="rplO" /locus_tag="BAMF_0135" /db_xref="GeneID:9779990" CDS 145160..145600 /gene="rplO" /locus_tag="BAMF_0135" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L15" /protein_id="YP_003918731.1" /db_xref="GI:308172026" /db_xref="GeneID:9779990" /translation="MKLHELKPSEGSRKVRNRVGRGIGSGNGKTAGKGHKGQNARSGG GVRPGFEGGQMPLFQRLPKRGFTNINRKEYAIVNVDKLNGFAEGTEVTPELLLETGVI SKLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI" misc_feature 145160..145552 /gene="rplO" /locus_tag="BAMF_0135" /note="Ribosomal protein L18e/L15; Region: Ribosomal_L18e; cl12022" /db_xref="CDD:196303" gene 145602..146897 /gene="secY" /locus_tag="BAMF_0136" /db_xref="GeneID:9779977" CDS 145602..146897 /gene="secY" /locus_tag="BAMF_0136" /function="16.1: Circulate16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit" /protein_id="YP_003918732.1" /db_xref="GI:308172027" /db_xref="GeneID:9779977" /translation="MFKTISNFMRVSDIRNKIIFTLLMLIVFRIGAFIPVPYVNAQAL QTQSSMGVFDLLNTFGGGALYQFSIFAMGITPYITASIIIQLLQMDVVPKFTEWSKQG EVGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLANGMLIEKSGISTYLIIALVLTGGT AFLMWLGEQITSNGVGNGISIIIFAGIVASIPKTVGQIYETQFVGSSDQLFIHIVKIA LLVIAILAVIVGVIFIQQAVRKIAIQYAKGQGRSPVGGGQSTHLPLKVNPAGVIPVIF AVAFLITPRTIASFFGTNDVTKWIQANFDNTHPVGMTVYVALIIAFTYFYAFVQVNPE QMADNLKKQGGYIPGVRPGKMTQDRITSILYRLTFVGSIFLAVISILPIFFIQFAGLP QSAQIGGTSLLIVVGVALETMKQLESQLVKRNYRGFMKN" misc_feature 145602..146888 /gene="secY" /locus_tag="BAMF_0136" /note="preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204" /db_xref="CDD:181698" misc_feature 145803..146843 /gene="secY" /locus_tag="BAMF_0136" /note="SecY translocase; Region: SecY; pfam00344" /db_xref="CDD:189510" gene 146949..147602 /gene="adk" /locus_tag="BAMF_0137" /db_xref="GeneID:9780076" CDS 146949..147602 /gene="adk" /locus_tag="BAMF_0137" /EC_number="2.7.4.3" /function="16.2: Construct biomass (Anabolism)16.7: Manage energy" /codon_start=1 /transl_table=11 /product="adenylate kinase" /protein_id="YP_003918733.1" /db_xref="GI:308172028" /db_xref="GeneID:9780076" /translation="MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRVAMKEETP LGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEDILEE YGKPIDYVINIKVDKDSLMERLTGRRICSVCGTTYHLVFNPPKTPGVCDKDGGDLYQR ADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLVNVNGQQDINDVYKDVKELLGGLSK" misc_feature 146949..147593 /gene="adk" /locus_tag="BAMF_0137" /note="adenylate kinase; Reviewed; Region: adk; PRK00279" /db_xref="CDD:178957" misc_feature 146952..147560 /gene="adk" /locus_tag="BAMF_0137" /note="Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428" /db_xref="CDD:30189" misc_feature order(147039..147041,147054..147056,147123..147125, 147198..147203,147207..147212,147222..147224) /gene="adk" /locus_tag="BAMF_0137" /note="AMP-binding site [chemical binding]; other site" /db_xref="CDD:30189" misc_feature order(147054..147056,147198..147200,147210..147212, 147327..147329,147459..147461,147471..147473) /gene="adk" /locus_tag="BAMF_0137" /note="ATP-AMP (Ap5A)-binding site [chemical binding]; other site" /db_xref="CDD:30189" gene 147599..148345 /gene="mapA" /locus_tag="BAMF_0138" /db_xref="GeneID:9778303" CDS 147599..148345 /gene="mapA" /locus_tag="BAMF_0138" /EC_number="3.4.11.18" /function="16.6: Maintain16.2: Construct biomass (Anabolism)16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="methionine aminopeptidase" /protein_id="YP_003918734.1" /db_xref="GI:308172029" /db_xref="GeneID:9778303" /translation="MIICKTPRELSIMREAGRIVALTHEELKKHIKPGISTKELDQIA ERFIEKQGAIPSFKGYNGFRGSICVSVNEELVHGIPGKRVLRDGDIISIDIGAKLNGY HGDSAWTYPVGNISDDDKRLLEVTEESLYKGLKEAKPGERLSNISHAIQTYVENEQFS VVREYVGHGVGQDLHEDPQIPHYGPPNKGPRLKPGMVLAIEPMVNAGSRYVKTLTDNW TVVTVDGKKCAHFEHTIAITETGFDILTKV" misc_feature 147599..148336 /gene="mapA" /locus_tag="BAMF_0138" /note="methionine aminopeptidase; Reviewed; Region: PRK07281" /db_xref="CDD:180918" misc_feature 147626..148339 /gene="mapA" /locus_tag="BAMF_0138" /note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086" /db_xref="CDD:29971" misc_feature order(147827..147829,147878..147880,147911..147913, 148100..148102,148199..148201,148292..148294) /gene="mapA" /locus_tag="BAMF_0138" /note="active site" /db_xref="CDD:29971" gene 148670..148888 /gene="infA" /locus_tag="BAMF_0139" /db_xref="GeneID:9779189" CDS 148670..148888 /gene="infA" /locus_tag="BAMF_0139" /function="16.3: Control16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="initiation factor IF-I" /protein_id="YP_003918735.1" /db_xref="GI:308172030" /db_xref="GeneID:9779189" /translation="MAKDDVIEVEGTIVETLPNAMFKVELENGHTVLAHVSGKIRMHF IRILPGDKVTVELSPYDLTRGRITYRYK" misc_feature 148688..148879 /gene="infA" /locus_tag="BAMF_0139" /note="S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451" /db_xref="CDD:88417" misc_feature order(148712..148720,148736..148738,148772..148774, 148781..148786,148799..148810,148859..148861, 148865..148867) /gene="infA" /locus_tag="BAMF_0139" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:88417" misc_feature order(148772..148774,148784..148786,148877..148879) /gene="infA" /locus_tag="BAMF_0139" /note="predicted 30S ribosome binding site; other site" /db_xref="CDD:88417" gene 148922..149035 /gene="rpmJ" /locus_tag="BAMF_0140" /db_xref="GeneID:9779048" CDS 148922..149035 /gene="rpmJ" /locus_tag="BAMF_0140" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L36 (50S ribosomal protein B)" /protein_id="YP_003918736.1" /db_xref="GI:308172031" /db_xref="GeneID:9779048" /translation="MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG" misc_feature 148922..149032 /gene="rpmJ" /locus_tag="BAMF_0140" /note="Ribosomal protein L36; Region: Ribosomal_L36; cl00380" /db_xref="CDD:185953" gene 149058..149423 /gene="rpsM" /locus_tag="BAMF_0141" /db_xref="GeneID:9779998" CDS 149058..149423 /gene="rpsM" /locus_tag="BAMF_0141" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S13" /protein_id="YP_003918737.1" /db_xref="GI:308172032" /db_xref="GeneID:9779998" /translation="MARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTR VRDLTEEELGKIRDVIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNS KNNARTRKGPRRTVANKKK" misc_feature 149058..149420 /gene="rpsM" /locus_tag="BAMF_0141" /note="Ribosomal protein S13/S18; Region: Ribosomal_S13; cl00331" /db_xref="CDD:185912" misc_feature 149058..149417 /gene="rpsM" /locus_tag="BAMF_0141" /note="Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Region: RpsM; COG0099" /db_xref="CDD:30448" gene 149444..149839 /gene="rpsK" /locus_tag="BAMF_0142" /db_xref="GeneID:9780015" CDS 149444..149839 /gene="rpsK" /locus_tag="BAMF_0142" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S11 (BS11)" /protein_id="YP_003918738.1" /db_xref="GI:308172033" /db_xref="GeneID:9780015" /translation="MAAARKQNTRKRRVKKNIESGIAHIRSTFNNTIVTITDTHGNAI SWSSAGALGFRGSRKSTPFAAQMAAETAAKGSIEHGLKTLEVTVKGPGSGREAAIRAL QAAGLEVTAIRDVTPVPHNGCRPPKRRRV" misc_feature 149453..149836 /gene="rpsK" /locus_tag="BAMF_0142" /note="Ribosomal protein S11; Region: Ribosomal_S11; cl00332" /db_xref="CDD:193772" gene 150015..150959 /gene="rpoA" /locus_tag="BAMF_0143" /db_xref="GeneID:9780013" CDS 150015..150959 /gene="rpoA" /locus_tag="BAMF_0143" /EC_number="2.7.7.6" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="RNA polymerase subunit alpha" /protein_id="YP_003918739.1" /db_xref="GI:308172034" /db_xref="GeneID:9780013" /translation="MIEIEKPKIETVEISDDAKFGKFVVEPLERGYGTTLGNSLRRIL LSSLPGAAVTSIQIDGVLHEFSTIEGVVEDVTTIILHIKKLALKIYSDEEKTLEIDVQ GEGTVTAADITHDSDVEILNPDLHIATLGENASFRVRLTAQRGRGYTPADSNKRDDQP IGVIPIDSIFTPVSRLSYQVENTRVGQVANYDKLTLDVWTDGSTGPKEAIALGSKILT EHLNIFVGLTDEAQHAEIMVEKEEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQE LANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKDD" misc_feature 150018..150950 /gene="rpoA" /locus_tag="BAMF_0143" /note="DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182" /db_xref="CDD:179956" misc_feature 150051..150686 /gene="rpoA" /locus_tag="BAMF_0143" /note="N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928" /db_xref="CDD:132904" misc_feature order(150051..150053,150087..150089,150096..150098, 150102..150110,150117..150119,150129..150131, 150138..150143,150153..150155,150654..150656, 150663..150668,150672..150677,150681..150686) /gene="rpoA" /locus_tag="BAMF_0143" /note="alphaNTD homodimer interface [polypeptide binding]; other site" /db_xref="CDD:132904" misc_feature order(150078..150080,150114..150116,150126..150128, 150135..150140,150201..150203,150207..150209, 150213..150215,150219..150230,150243..150245, 150261..150263,150405..150407,150456..150458, 150513..150515,150519..150521,150537..150545, 150549..150560,150588..150590,150597..150599, 150603..150605) /gene="rpoA" /locus_tag="BAMF_0143" /note="alphaNTD - beta interaction site [polypeptide binding]; other site" /db_xref="CDD:132904" misc_feature order(150207..150209,150243..150245,150252..150254, 150261..150266,150453..150458,150462..150464, 150519..150521,150534..150539,150564..150566) /gene="rpoA" /locus_tag="BAMF_0143" /note="alphaNTD - beta' interaction site [polypeptide binding]; other site" /db_xref="CDD:132904" misc_feature 150747..150929 /gene="rpoA" /locus_tag="BAMF_0143" /note="Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; cl11613" /db_xref="CDD:187104" gene 151037..151399 /gene="rplQ" /locus_tag="BAMF_0144" /db_xref="GeneID:9779999" CDS 151037..151399 /gene="rplQ" /locus_tag="BAMF_0144" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L17 (BL15)" /protein_id="YP_003918740.1" /db_xref="GI:308172035" /db_xref="GeneID:9779999" /translation="MSYRKLGRTSSQRKAMLRDLTTDLIINERIETTETRAKELRSVV EKMITLGKRGDLHARRQAAAYIRNEVANEENNQDALQKLFSDIATRYEERQGGYTRIM KLGPRRGDGAPMAIIELV" misc_feature 151037..151396 /gene="rplQ" /locus_tag="BAMF_0144" /note="Ribosomal protein L17; Region: Ribosomal_L17; cl00356" /db_xref="CDD:193783" gene 151531..152376 /gene="ybxA" /locus_tag="BAMF_0145" /db_xref="GeneID:9779979" CDS 151531..152376 /gene="ybxA" /locus_tag="BAMF_0145" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="ABC efflux transporter ATP-binding protein" /protein_id="YP_003918741.1" /db_xref="GI:308172036" /db_xref="GeneID:9779979" /translation="MDQKQLISVKDILFRYRKDAERPALDGVSLEVYEGEWLAIVGHN GSGKSTLARALNGLILPEAGDIEVGGMKLTEDTVWDVRKKIGMVFQNPDNQFVGTTVR DDVAFGLENNGVPREEMIERVDWAVKQVNMQDFLDQEPHHLSGGQKQRVAIAGIIAAR PDIMILDEATSMLDPIGREEVLDTVRRLKDQGMATVISITHDLEEAARADRIIVMNGG RKYAEGPPEEIFKLNEDLVRIGLDLPFSFQLSLLLKESGLALSKNHLTQEGLVNELWT LKSKM" misc_feature 151534..152373 /gene="ybxA" /locus_tag="BAMF_0145" /note="cobalt transporter ATP-binding subunit; Provisional; Region: cbiO; PRK13635" /db_xref="CDD:184195" misc_feature 151552..152187 /gene="ybxA" /locus_tag="BAMF_0145" /note="Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This...; Region: ABC_cobalt_CbiO_domain1; cd03225" /db_xref="CDD:72984" misc_feature 151654..151677 /gene="ybxA" /locus_tag="BAMF_0145" /note="Walker A/P-loop; other site" /db_xref="CDD:72984" misc_feature order(151663..151668,151672..151680,151798..151800, 152029..152034,152131..152133) /gene="ybxA" /locus_tag="BAMF_0145" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72984" misc_feature 151789..151800 /gene="ybxA" /locus_tag="BAMF_0145" /note="Q-loop/lid; other site" /db_xref="CDD:72984" misc_feature 151957..151986 /gene="ybxA" /locus_tag="BAMF_0145" /note="ABC transporter signature motif; other site" /db_xref="CDD:72984" misc_feature 152017..152034 /gene="ybxA" /locus_tag="BAMF_0145" /note="Walker B; other site" /db_xref="CDD:72984" misc_feature 152041..152052 /gene="ybxA" /locus_tag="BAMF_0145" /note="D-loop; other site" /db_xref="CDD:72984" misc_feature 152119..152139 /gene="ybxA" /locus_tag="BAMF_0145" /note="H-loop/switch region; other site" /db_xref="CDD:72984" gene 152352..153221 /gene="ybaE" /locus_tag="BAMF_0146" /db_xref="GeneID:9780499" CDS 152352..153221 /gene="ybaE" /locus_tag="BAMF_0146" /function="16.8: Protect16.1: Circulate" /codon_start=1 /transl_table=11 /product="ABC efflux transporter ATP-binding protein" /protein_id="YP_003918742.1" /db_xref="GI:308172037" /db_xref="GeneID:9780499" /translation="MDIKIKDVEHRYQIKTPFERLALYDINAVIKEGSYVAVIGHTGS GKSTLLQHLNGLLRPTKGQLELGSTILAAGKKNKDLKALRKKVGIVFQFPEHQLFEET VLKDIAFGPMNFGVKKEDAERKAKEMLELVGLPEDILERSPFELSGGQMRRVAIAGVL AMEPEVLVLDEPTAGLDPRGRQDIMDMFYALHQRGNLTTVLVTHSMEDAARYADEMIV MHKGTIKATGSPSDLFAKGEEMAEMGLDLPESVKFQRRLEAVLGVKYEKPMLTLQDAA SEIKAFFQEDKDQ" misc_feature 152352..153218 /gene="ybaE" /locus_tag="BAMF_0146" /note="cobalt transporter ATP-binding subunit; Provisional; Region: cbiO; PRK13634" /db_xref="CDD:184194" misc_feature 152361..153020 /gene="ybaE" /locus_tag="BAMF_0146" /note="Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This...; Region: ABC_cobalt_CbiO_domain1; cd03225" /db_xref="CDD:72984" misc_feature 152469..152492 /gene="ybaE" /locus_tag="BAMF_0146" /note="Walker A/P-loop; other site" /db_xref="CDD:72984" misc_feature order(152478..152483,152487..152495,152625..152627, 152859..152864,152961..152963) /gene="ybaE" /locus_tag="BAMF_0146" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72984" misc_feature 152616..152627 /gene="ybaE" /locus_tag="BAMF_0146" /note="Q-loop/lid; other site" /db_xref="CDD:72984" misc_feature 152787..152816 /gene="ybaE" /locus_tag="BAMF_0146" /note="ABC transporter signature motif; other site" /db_xref="CDD:72984" misc_feature 152847..152864 /gene="ybaE" /locus_tag="BAMF_0146" /note="Walker B; other site" /db_xref="CDD:72984" misc_feature 152871..152882 /gene="ybaE" /locus_tag="BAMF_0146" /note="D-loop; other site" /db_xref="CDD:72984" misc_feature 152949..152969 /gene="ybaE" /locus_tag="BAMF_0146" /note="H-loop/switch region; other site" /db_xref="CDD:72984" misc_feature 153048..153188 /gene="ybaE" /locus_tag="BAMF_0146" /note="Cobalt ATP-binding cassette C terminal; Region: CoABC_C; pfam12370" /db_xref="CDD:193002" gene 153218..154015 /gene="ybaF" /locus_tag="BAMF_0147" /db_xref="GeneID:9780469" CDS 153218..154015 /gene="ybaF" /locus_tag="BAMF_0147" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_003918743.1" /db_xref="GI:308172038" /db_xref="GeneID:9780469" /translation="MMDSMIIGKYVPGSSLIHRLDPRTKLVSIFLFVCIVFLANNVQT YALLGLFTFGVIALTRVPVSFLLKGLKPIIWIVAFTFLLHIFMTHEGAVIFRLGWFKV YEGGLVQGIFISLRFVYLIFMTTLLTLTTTPIEITDGMEQLLHPFKKVKLPVHELALM MSISLRFIPTLMEETDKIMKAQMARGADFTSGPVKDRIKAVVPLLVPLFVSAFKRAEE LAVAMEARGYQGGEGRTKYRKLVWTGKDTGAILLIIVLAVLLFFLRS" misc_feature 153254..153928 /gene="ybaF" /locus_tag="BAMF_0147" /note="Cobalt transport protein; Region: CbiQ; cl00463" /db_xref="CDD:186013" gene 154028..154771 /gene="truA" /locus_tag="BAMF_0148" /db_xref="GeneID:9780470" CDS 154028..154771 /gene="truA" /locus_tag="BAMF_0148" /function="16.2: Construct biomass (Anabolism)16.6: Maintain" /codon_start=1 /transl_table=11 /product="pseudouridylate synthase I" /protein_id="YP_003918744.1" /db_xref="GI:308172039" /db_xref="GeneID:9780470" /translation="MRMKCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGRV PVYSSGRTDSDVHAAGQVIHFDTPLSIPAEKWPFALNALLPDDIAVKTAEIADDGFHA RFSAVQKEYRYFVYTEKHPDVFKRHYAYHFAYQLNVQKMREASRHLIGTHDFTSFCAV DTAVQDKVRTIYELEWTETGDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVK AMLEAKDREAAGRTAPGHGLYLWSVCYDN" misc_feature 154028..154762 /gene="truA" /locus_tag="BAMF_0148" /note="tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021" /db_xref="CDD:178798" misc_feature 154040..154762 /gene="truA" /locus_tag="BAMF_0148" /note="PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1)...; Region: PseudoU_synth_EcTruA; cd02570" /db_xref="CDD:30020" misc_feature order(154049..154051,154268..154270,154277..154300) /gene="truA" /locus_tag="BAMF_0148" /note="dimerization interface 3.5A [polypeptide binding]; other site" /db_xref="CDD:30020" misc_feature order(154175..154186,154619..154621) /gene="truA" /locus_tag="BAMF_0148" /note="active site" /db_xref="CDD:30020" gene 154931..155368 /gene="rplM" /locus_tag="BAMF_0149" /db_xref="GeneID:9780339" CDS 154931..155368 /gene="rplM" /locus_tag="BAMF_0149" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L13" /protein_id="YP_003918745.1" /db_xref="GI:308172040" /db_xref="GeneID:9780339" /translation="MRTTPMANASTIERKWLVVDAAGKTLGRLSTEVASILRGKHKPT YTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTMHPGGLKSRTALEMRTNYPEKML ELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHQAQQPEVYELRG" misc_feature 154976..155317 /gene="rplM" /locus_tag="BAMF_0149" /note="Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392" /db_xref="CDD:88313" misc_feature order(155003..155005,155009..155014,155021..155023, 155030..155032,155042..155044,155126..155128, 155132..155134,155216..155221,155237..155245, 155249..155257,155261..155269,155273..155275, 155279..155281,155291..155293,155300..155305) /gene="rplM" /locus_tag="BAMF_0149" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88313" misc_feature 155219..155221 /gene="rplM" /locus_tag="BAMF_0149" /note="L3 interface [polypeptide binding]; other site" /db_xref="CDD:88313" gene 155389..155781 /gene="rpsI" /locus_tag="BAMF_0150" /db_xref="GeneID:9779975" CDS 155389..155781 /gene="rpsI" /locus_tag="BAMF_0150" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S9" /protein_id="YP_003918746.1" /db_xref="GI:308172041" /db_xref="GeneID:9779975" /translation="MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSPAL IEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRATLKRAG LLTRDARMKERKKYGLKGARRAPQFSKR" misc_feature 155389..155778 /gene="rpsI" /locus_tag="BAMF_0150" /note="Ribosomal protein S9/S16; Region: Ribosomal_S9; cl00334" /db_xref="CDD:193774" gene 155919..156686 /gene="ybaJ" /locus_tag="BAMF_0151" /db_xref="GeneID:9780011" CDS 155919..156686 /gene="ybaJ" /locus_tag="BAMF_0151" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_003918747.1" /db_xref="GI:308172042" /db_xref="GeneID:9780011" /translation="MNKLAIHNSKAWDKKVEIGNEWTVAVDSHTIGKAKKGSWSIRMT PGKDVPADWFPPIDGLKVLCLASGGGQQGPVLAAAGADVTVFDNSEKQLAQDRMVAER EDLTLRTVKGSMNDLSCFEDESFDFIVHPVSNCFVDTVLPVWKEAHRVLKKGGSLVSG FVNPVVFLFDMDLEQEGVLKVKYSIPFSDEKDLSKKKVKELIDNNEALEFGHTLEDQI KGQIDAGFMVTGFYEDKGGLVLDEYINTYSVTRSIKI" misc_feature 156099..156404 /gene="ybaJ" /locus_tag="BAMF_0151" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(156111..156131,156177..156182,156252..156260) /gene="ybaJ" /locus_tag="BAMF_0151" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 156908..157357 /gene="ybaK" /locus_tag="BAMF_0152" /db_xref="GeneID:9780471" CDS 156908..157357 /gene="ybaK" /locus_tag="BAMF_0152" /function="16.6: Maintain16.8: Protect" /codon_start=1 /transl_table=11 /product="alkylated deoxynucleotide triphosphohydrolase" /protein_id="YP_003918748.1" /db_xref="GI:308172043" /db_xref="GeneID:9780471" /translation="MAMAEVLSFSDVKRQKDFELEKNLLKELSLTQIIQSVKACLSPL FPFLQDENGILSEGCIDFAIEAYLLGGRFGVFGYYGESLQRANARSSEEEEELTVDFF EYLCSWTHEQYSSVEQKEIYEASCRFINSWWTEGFLQRKKQCKLRMR" misc_feature 156914..157354 /gene="ybaK" /locus_tag="BAMF_0152" /note="Protein of unknown function (DUF2521); Region: DUF2521; pfam10730" /db_xref="CDD:151215" gene 157418..158131 /gene="cwlD" /locus_tag="BAMF_0153" /db_xref="GeneID:9780472" CDS 157418..158131 /gene="cwlD" /locus_tag="BAMF_0153" /EC_number="3.5.1.28" /function="16.6: Maintain16.13: Shape16.8: Protect" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="YP_003918749.1" /db_xref="GI:308172044" /db_xref="GeneID:9780472" /translation="MRNKLKWLGFLLGFIILLCLFRFQFHNDDSWRPWSLPLSGKIIY LDPGHGGPDGGATGSNHLEKDITLEVASRVRDYLQEQGALVIMTRETDTDLAPEGMKG YSRRKAEDLRKRVEIINRSEAELYISIHLNAIPSPKWSGAQSFYYGKYEENEKVAKYI QDELRINLENTTRKAKRIHGIYLMQNVTKPGALVEVGFLSNPAEAKRLSQPKYQDKIA SSVYKGVLRYFTEKGDPPE" misc_feature 157541..158095 /gene="cwlD" /locus_tag="BAMF_0153" /note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696" /db_xref="CDD:119407" misc_feature order(157562..157564,157604..157606,157805..157807, 158000..158002) /gene="cwlD" /locus_tag="BAMF_0153" /note="active site" /db_xref="CDD:119407" misc_feature order(157562..157564,157604..157606,157805..157807) /gene="cwlD" /locus_tag="BAMF_0153" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:119407" gene 158211..159263 /gene="salA" /locus_tag="BAMF_0154" /db_xref="GeneID:9778610" CDS 158211..159263 /gene="salA" /locus_tag="BAMF_0154" /note="'other functions; Miscellaneous'" /codon_start=1 /transl_table=11 /product="MRP family regulator SalA" /protein_id="YP_003918750.1" /db_xref="GI:308172045" /db_xref="GeneID:9778610" /translation="MIREDEVRNIVGKMREPFLHRPLGELDAVKEVKVKPEKRHVSVK IALAKTGTAEQMGIQQEIVSVLKEAGAETVGLRFEELPEETLAKFSQPAPESETLLNR KNPPVFLAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVRP TVEGEKLLPVERFGVKVMSMGFFVEENAPVVWRGPMLGKMLNNFFHEVDWGEVDYIVL DLPPGTGDVALDVHTMLPSSKEIIVTTPHPTAAFVAARAGSMAIKTDHEVVGVIENMA YYESAKTGEKEFVFGQGGGDKLAEELQVPLLGRIPLKQPDWDKDQFAPSVYDRSHPIG EIYMGIAQKVIEKTAE" misc_feature 158586..159152 /gene="salA" /locus_tag="BAMF_0154" /note="MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037" /db_xref="CDD:73300" gene complement(159296..159853) /gene="gerD" /locus_tag="BAMF_0155" /db_xref="GeneID:9780053" CDS complement(159296..159853) /gene="gerD" /locus_tag="BAMF_0155" /function="16.3: Control16.13: Shape" /codon_start=1 /transl_table=11 /product="lipoprotein with a role in spores' rapid response to nutrient germinants" /protein_id="YP_003918751.1" /db_xref="GI:308172046" /db_xref="GeneID:9780053" /translation="MSKAKTLLISCFVVLSVTACAPKDQAADMDYDQTKKMVVDILKT DDGKKAIKEILNDDAMNEALVIDQNAIKGTIEKTLTSKKGAEFWKTIFEDSKFAESFA KTLQPEHEKIIKKLMKDPDYQKSFMQILQDPGMDKKYYELVKSQKFRSYLEDVITETL SSPLFKKQFEDELKKAASSSEKESQ" gene 159961..160557 /gene="kbaA" /locus_tag="BAMF_0156" /db_xref="GeneID:9778880" CDS 159961..160557 /gene="kbaA" /locus_tag="BAMF_0156" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="Inner membrane protein oxaA" /protein_id="YP_003918752.1" /db_xref="GI:308172047" /db_xref="GeneID:9778880" /translation="MKSRGLVRFFFSILAVGALITSVVGFALKWGEYKGFFLNFEAGQ IFSVLIWFIGVGMIFSVISQMGFFVFLTVHRFALEILRSSSLWNLLQLFIILFVAFDL MYVRFLFFGERDDSIAGFVWLPLALLAVGLLTAYIKQKQSSRNTFISSLFLMVVITAL EWVPALRVNNEDWLYLMLIPLMGCNAFQLLMLPKFAQR" gene complement(160558..161322) /gene="pdaB" /locus_tag="BAMF_0157" /db_xref="GeneID:9779088" CDS complement(160558..161322) /gene="pdaB" /locus_tag="BAMF_0157" /note="'intermediary metabolism; Metabolism of carbohydrates and related molecules; Specific pathways'" /codon_start=1 /transl_table=11 /product="sporulation-specific polysaccharide deacetylase PdaB" /protein_id="YP_003918753.1" /db_xref="GI:308172048" /db_xref="GeneID:9779088" /translation="MNHFYVWHIKRIKQLLIIIIAAFAAASLFYIQRAVPLPVFLTDN GPKAISKGETKANEVALTFDISWGDEKAVPILNTLKANGIKNATFFLSASWAERHPDT VERMIKDGHQIGSMGYAYKNYTNLEDQDIKKDILRAQNAFKKMAVKNVHLLRPPTGQF NKKVLTIAQQYHYSVVHYSINSHDWTNPGPDKIIENVNSHIKGGDIVLLHASDSATQT EEALPAIIHNLKQKGLKNVTVGDLIANTDVKSSEVK" misc_feature complement(160567..161322) /gene="pdaB" /locus_tag="BAMF_0157" /note="Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Region: CDA1; COG0726" /db_xref="CDD:31070" misc_feature complement(160594..161169) /gene="pdaB" /locus_tag="BAMF_0157" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene 161670..163207 /locus_tag="BAMF__r13" /db_xref="GeneID:9779468" rRNA 161670..163207 /locus_tag="BAMF__r13" /product="16S ribosomal RNA" /db_xref="GeneID:9779468" gene 163389..166316 /locus_tag="BAMF__r14" /db_xref="GeneID:9778156" rRNA 163389..166316 /locus_tag="BAMF__r14" /product="23S ribosomal RNA" /db_xref="GeneID:9778156" gene 166370..166484 /locus_tag="BAMF__r15" /db_xref="GeneID:9778157" rRNA 166370..166484 /locus_tag="BAMF__r15" /product="5S ribosomal RNA" /db_xref="GeneID:9778157" gene 166529..166603 /locus_tag="BAMF__t17" /db_xref="GeneID:9778158" tRNA 166529..166603 /locus_tag="BAMF__t17" /product="tRNA-Asn" /anticodon=(pos:166561..166563,aa:Asn) /codon_recognized="AAC" /db_xref="GeneID:9778158" gene 166606..166678 /locus_tag="BAMF__t18" /db_xref="GeneID:9778190" tRNA 166606..166678 /locus_tag="BAMF__t18" /product="tRNA-Thr" /anticodon=(pos:166639..166641,aa:Thr) /codon_recognized="ACC" /db_xref="GeneID:9778190" gene 167021..167095 /locus_tag="BAMF__t19" /db_xref="GeneID:9778191" tRNA 167021..167095 /locus_tag="BAMF__t19" /product="tRNA-Gly" /anticodon=(pos:167053..167055,aa:Gly) /codon_recognized="GGC" /db_xref="GeneID:9778191" gene 167106..167182 /locus_tag="BAMF__t20" /db_xref="GeneID:9778192" tRNA 167106..167182 /locus_tag="BAMF__t20" /product="tRNA-Arg" /anticodon=(pos:167140..167142,aa:Arg) /codon_recognized="CGU" /db_xref="GeneID:9778192" gene 167199..167275 /locus_tag="BAMF__t21" /db_xref="GeneID:9778193" tRNA 167199..167275 /locus_tag="BAMF__t21" /product="tRNA-Pro" /anticodon=(pos:167233..167235,aa:Pro) /codon_recognized="CCA" /db_xref="GeneID:9778193" gene 167580..169117 /locus_tag="BAMF__r16" /db_xref="GeneID:9778194" rRNA 167580..169117 /locus_tag="BAMF__r16" /product="16S ribosomal RNA" /db_xref="GeneID:9778194" gene 169223..169299 /locus_tag="BAMF__t22" /db_xref="GeneID:9778159" tRNA 169223..169299 /locus_tag="BAMF__t22" /product="tRNA-Ile" /anticodon=(pos:169257..169259,aa:Ile) /codon_recognized="AUC" /db_xref="GeneID:9778159" gene 169314..169389 /locus_tag="BAMF__t23" /db_xref="GeneID:9778195" tRNA 169314..169389 /locus_tag="BAMF__t23" /product="tRNA-Ala" /anticodon=(pos:169347..169349,aa:Ala) /codon_recognized="GCA" /db_xref="GeneID:9778195" gene 169472..172399 /locus_tag="BAMF__r17" /db_xref="GeneID:9778196" rRNA 169472..172399 /locus_tag="BAMF__r17" /product="23S ribosomal RNA" /db_xref="GeneID:9778196" gene 172453..172567 /locus_tag="BAMF__r18" /db_xref="GeneID:9778160" rRNA 172453..172567 /locus_tag="BAMF__r18" /product="5S ribosomal RNA" /db_xref="GeneID:9778160" gene 172935..174472 /locus_tag="BAMF__r19" /db_xref="GeneID:9778161" rRNA 172935..174472 /locus_tag="BAMF__r19" /product="16S ribosomal RNA" /db_xref="GeneID:9778161" gene 174654..177581 /locus_tag="BAMF__r20" /db_xref="GeneID:9778162" rRNA 174654..177581 /locus_tag="BAMF__r20" /product="23S ribosomal RNA" /db_xref="GeneID:9778162" gene 177635..177749 /locus_tag="BAMF__r21" /db_xref="GeneID:9778163" rRNA 177635..177749 /locus_tag="BAMF__r21" /product="5S ribosomal RNA" /db_xref="GeneID:9778163" gene complement(177844..179058) /gene="glcP1" /locus_tag="BAMF_0158" /db_xref="GeneID:9778164" CDS complement(177844..179058) /gene="glcP1" /locus_tag="BAMF_0158" /function="Fucose permease" /note="Bypass of stop codon protein 6;, Major facilitator superfamily MFS-1, Major Facilitator Superfamily,, no ortholog in B. subtilis" /codon_start=1 /transl_table=11 /product="Major facilitator superfamily MFS-1" /protein_id="YP_003918754.1" /db_xref="GI:308172049" /db_xref="GeneID:9778164" /translation="MMKTRLLWISCFSYGSIAFTLVILGAVLPELLTHYSQTYSNGGV LVFSQFMGFLVGVIGMPYMVKKFGRKNVVIFGLALISCEVFITFLPPWPLLFLLVSIA GLGAGLVESCVGTIILTAIKERQAVAMSKMEVAYGLGALFMPLLSGFLINSHMWTIAF LVLGLSSFALLIAWKQMSFGSIDQLLIRKDVSSDGTKKESTGYRSHGLLFIALAAAYF FFYGGSEVSIVHFIPSIFAEKWDIPNSLATITVTVYWTGMIIGRLLTGPVSEKLTYHR YLRIISVGGLAALAVLALSKSVWFGFALCFFLGLFMAGMFAIALIITNHFYPGKTETT TSILLASNGLGGSLLPIAVGWSLDEYPAQTAFWLFTALMLLMLLIVFSLRMLETIKSN SLQNHSSKAKSI" misc_feature complement(<178537..179040) /gene="glcP1" /locus_tag="BAMF_0158" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene 179283..180551 /gene="gabT1" /locus_tag="BAMF_0159" /db_xref="GeneID:9778902" CDS 179283..180551 /gene="gabT1" /locus_tag="BAMF_0159" /EC_number="2.6.1.19" /function="4-aminobutyrate aminotransferase and related aminotransferases" /note="Glutamate-1-semialdehyde 2,1-aminomutase; GSA; Glutamate-1-semialdehyde aminotransferase; GSA-AT;, Aminotransferase class-III, Aminotransferase class-III, no ortholog in B. subtilis, argD: acetylornithine and succinylornithine aminotransferases" /codon_start=1 /transl_table=11 /product="4-aminobutyrate aminotransferase" /protein_id="YP_003918755.1" /db_xref="GI:308172050" /db_xref="GeneID:9778902" /translation="MGTKEITNPDSLYYSVDDVVMERGEGIYLYDQEGNEYIDCASAT FNLNLGYGNKEVIDTVKDQADKLIHVTSSFQTDAVNKLAEKLVEIAPDNLTKVHPKVS SGSGANEGAIKMAQYYSGKTDVISLFRSHLGQTYMTSALSGNSFRKEPFPPQISFGLQ VPDPYCSRCFYNQKPDSCGMLCVERINDFIEYASNGKIAAMIIEPISGNGGNVVPPKE YFKQLRKLCDEHDIALIFDEIQTGFGRTGKMFAADHFDVKPNMMTVAKGLGGTGFQVA ATLTEEKYTGLPGYTHSFTYGSNVMAAAAACKTIDIMQRPGFLENVTTVGNYIMDRLE TMKEDFAFISEVRGVGLMIGVEIVKENNEPDVELTNYIAKRAMDYGLILRTSRYGFGN VFKIRPPLTITLSEAEVLCYRLRKLLEEIK" misc_feature 179304..180548 /gene="gabT1" /locus_tag="BAMF_0159" /note="4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]; Region: GabT; COG0160" /db_xref="CDD:30509" misc_feature 179331..180536 /gene="gabT1" /locus_tag="BAMF_0159" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature order(179589..179597,179673..179675,179682..179684, 179892..179894,179991..179993,179997..180002, 180078..180080) /gene="gabT1" /locus_tag="BAMF_0159" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature order(179592..179597,179673..179675,179892..179894, 179991..179993,180000..180002,180078..180080) /gene="gabT1" /locus_tag="BAMF_0159" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 180078..180080 /gene="gabT1" /locus_tag="BAMF_0159" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 180548..181498 /gene="yktc1" /locus_tag="BAMF_0160" /db_xref="GeneID:9778855" CDS 180548..181498 /gene="yktc1" /locus_tag="BAMF_0160" /EC_number="2.7.1.23" /function="Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family" /note="inorganic polyphosphate/ATP-NAD kinase; Poly(P)/ATP NAD kinase;, Inositol monophosphatase, no ortholog in B. subtilis" /codon_start=1 /transl_table=11 /product="inorganic polyphosphate/ATP-NAD kinase" /protein_id="YP_003918756.1" /db_xref="GI:308172051" /db_xref="GeneID:9778855" /translation="MRDYIIELGQYVYQKVKNQKGTLKNRLVNGYSPGGDAQFNIDAA AEEAVLDYIQEKGHPVAFYTEDGGLKLIGENPQYILIVDPIDGTRPAAAGLEMSCISI ALASYKPNARIKDIEFAFLLELKSGAYMYGDIYSDTIQFEGYQGELPNLSGVQDIKNM FWSLEFNGHPAQLMTDAYGHLIDQSANNGGVFVFNSASYSISRIITGQMDAYVDIGNR LLKDDPKLLSDFQQVGNGQVLHLFPYDIAASVFLAKKAGVVITDAYGRSLDDTLLTDL SYQNQQSCIAASTKELHQTLLDQIRWGRKEERYEGVGLDS" misc_feature 180629..181342 /gene="yktc1" /locus_tag="BAMF_0160" /note="FIG, FBPase/IMPase/glpX-like domain. A superfamily of metal-dependent phosphatases with various substrates. Fructose-1,6-bisphospatase (both the major and the glpX-encoded variant) hydrolyze fructose-1,6,-bisphosphate to fructose-6-phosphate in...; Region: FIG; cl00289" /db_xref="CDD:193751" misc_feature order(180671..180673,180740..180745,180794..180808, 181280..181282) /gene="yktc1" /locus_tag="BAMF_0160" /note="active site" /db_xref="CDD:73280" gene 181473..182519 /gene="gutB1" /locus_tag="BAMF_0161" /db_xref="GeneID:9780988" CDS 181473..182519 /gene="gutB1" /locus_tag="BAMF_0161" /EC_number="1.1.1.14" /function="NADPH:quinone reductase and related Zn-dependent oxidoreductases" /note="L-threonine 3-dehydrogenase;, Alcohol dehydrogenase superfamily, zinc-containing, Alcohol dehydrogenase GroES-like domain, tdh: L-threonine 3-dehydrogenase" /codon_start=1 /transl_table=11 /product="zinc-containing alcohol dehydrogenase, long-chain" /protein_id="YP_003918757.1" /db_xref="GI:308172052" /db_xref="GeneID:9780988" /translation="MKALVWTPNDKLEYQEVDEPQIRKANDVKVKIFGTGICGTDLNV LKGKMNATHHMIMGHESVGAVVEVGPDVTNVKVGDRVVIDPTQFCGKCHYCRRGLTCY CETFEEWQLGIGAHGTFAEYYVGEDRFMYKIPDSMEWERATLVEPLSCVLNVVDKASI QPEDSVLVLGSGPIGLLVQMMVKKLARLTVATEIGSFRSEAASRISDYVYHPEALTVD EVKRINQGRKFDVIFDAIGNQLDWAYPFIEKGGRIVPMGFDDTYEMTVRPYQLLSNGV TIVGTGEARQIMEAALACASDLPQLYDFITEKTELKNYEEAIDHLMGIDPVTKERKDI SAIKTILVSDPELL" misc_feature 181473..182498 /gene="gutB1" /locus_tag="BAMF_0161" /note="Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063" /db_xref="CDD:31263" misc_feature 181473..182429 /gene="gutB1" /locus_tag="BAMF_0161" /note="Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl14614" /db_xref="CDD:196795" misc_feature order(181584..181592,181599..181601,181908..181910, 181920..181922,181980..181997,182049..182054, 182064..182066,182106..182108,182175..182180, 182238..182243,182313..182321) /gene="gutB1" /locus_tag="BAMF_0161" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176178" gene 182753..184186 /gene="ybaR" /locus_tag="BAMF_0162" /db_xref="GeneID:9778979" CDS 182753..184186 /gene="ybaR" /locus_tag="BAMF_0162" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_003918758.1" /db_xref="GI:308172053" /db_xref="GeneID:9778979" /translation="MKDYTLQQQWFGNVRKDILAGILVALALIPEAIGFSIIAGVDPM VGLYASFCIAIIISIFGGRPGMISAATGSMAVVMVTLVADYGLQYLFAATILTGIIQF VLGVSKIARLMKFIPRSVMIGFVNALAILIFSAQLPQFKGASWVMYAMLAGSLAIIYL LPKVTTAVPSPLVAIIVMTIIAVVFHADVRTVGDMGGITSSLPHFLIPDVPWTFETLR IIFPYSLALAFVGLLESLLTAQIIDEMTDTDSDKNKESRGQGIANIVNGFFGGMAGCA MIGQSVINTKAGGRGRLSAFTAGAFLMFLIAVLSGIVVKIPMAALVAVMVMVSIGTFD WSSIKGLRKAPLTDSIVMVITVLTVVLTNDLSKGVFVGVLLSAIFFTAKISKLKIVSH SEQKDVRTYKVTGQIFFASVSELMNAIDYDEGVKRIVIDLTGAHVWDDSGAAALEKIV AKCKEYGIEAELKGLNQKSRDLMKQMA" misc_feature 182768..184183 /gene="ybaR" /locus_tag="BAMF_0162" /note="Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659" /db_xref="CDD:31004" misc_feature 183062..183799 /gene="ybaR" /locus_tag="BAMF_0162" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" misc_feature 183932..184180 /gene="ybaR" /locus_tag="BAMF_0162" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042" /db_xref="CDD:132913" gene 184295..185278 /gene="ybaS" /locus_tag="BAMF_0163" /db_xref="GeneID:9780473" CDS 184295..185278 /gene="ybaS" /locus_tag="BAMF_0163" /function="7: Transport and binding proteins" /codon_start=1 /transl_table=11 /product="sodium dependent transporter" /protein_id="YP_003918759.1" /db_xref="GI:308172054" /db_xref="GeneID:9780473" /translation="MMWLQKMNQVLGRIMPLLTPSSVAAGVLLSQHISWMAGAVPWIF AFITFTGSLSANFQSLKRSIEQPLPMIMALFVLHIFMPVFAWGSGHLIFSGDPLTVTG LIMGVVIPTGITSLIWAAMYKGNVGLTLSIILVDTVLSPFIVPLSLSVLAGANVQMDV WGMMKGLLEMVVLPSIAGMMVNQFSPPVRTQAISRTLSPFSKLCLMIVIAINSSEIAP YVTHLDIKFAGIAAVVFFIAMTGYAVAWLIGRLLKRSQDEIVSLIYTGGMRNISAGAV LAVSFFPSQVAVPVVIGMLFQQILAALFGYLLRRFELKPVVMKYEKNRSAT" misc_feature 184295..185239 /gene="ybaS" /locus_tag="BAMF_0163" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene complement(185267..186019) /gene="ybbA" /locus_tag="BAMF_0164" /db_xref="GeneID:9780474" CDS complement(185267..186019) /gene="ybbA" /locus_tag="BAMF_0164" /note="'unknown; unknown proteins from B. subtilis'" /codon_start=1 /transl_table=11 /product="bacillibactin esterase" /protein_id="YP_003918760.1" /db_xref="GI:308172055" /db_xref="GeneID:9780474" /translation="MRGTLTEHRINGKECTVYLPPSYSVQTKALPWVYVLDGGVLFLE QMEKLEFQFANGTLPELIFAGIKPDNRLDEYTPWPAPSLSPAFHDFGGKGSLFLEDLT NTIIPTVEDMHHMSPDPETRGLIGASLGGLFSMYAMLQKPEIFGRIGCISGSFWYEKS ADYVRSAPLRQTRQRIYMSVGSREAEHKNNIQNTMVRQNRDVHESMRQKGFSHSQLCF TIEEGAVHHQEAFKRQFISALSWLYGKNRSRG" misc_feature complement(185276..186016) /gene="ybbA" /locus_tag="BAMF_0164" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature complement(185294..185971) /gene="ybbA" /locus_tag="BAMF_0164" /note="Putative esterase; Region: Esterase; pfam00756" /db_xref="CDD:189703" gene complement(186016..187035) /gene="feuC" /locus_tag="BAMF_0165" /db_xref="GeneID:9780475" CDS complement(186016..187035) /gene="feuC" /locus_tag="BAMF_0165" /note="'cell envelope and cellular processes; Transport/binding proteins and lipoproteins'" /codon_start=1 /transl_table=11 /product="siderophores enterobactin and bacillibactin ABC-transporter FeuC" /protein_id="YP_003918761.1" /db_xref="GI:308172056" /db_xref="GeneID:9780475" /translation="MRKMAGIYIILIVLILLVSYFSMTSGSFSAKPGELLSTLFHIHP NPQYEILLFQLRLPRIVMAAAIGLGLGIAGTVIQAITKNGLADPGILGINAGAGAGIV AFMLLFQGQSEATALASAMGMPVFGLIGGLMAAVLIYIFAWHRGHLESGRIILVGIAM NSGFSALSLFLSLKMDPQDYEMAMVWKNGSIWSANWMTITAILPWLIVFIPLLMAKMS LLDTIRFDEDTVKSLGVSSNKEKTILLVACIALISACVTAAGSMAFVGLIAPHISRRL AGIEHRYSLPVSGLVGMLLVISADFAGKLFFQPSEVPAGIILAILGVPYFFFLLFKQK KGLDA" misc_feature complement(186061..186810) /gene="feuC" /locus_tag="BAMF_0165" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature complement(order(186193..186195,186214..186216, 186337..186345,186349..186366,186370..186375, 186379..186387,186391..186396,186784..186792, 186802..186804)) /gene="feuC" /locus_tag="BAMF_0165" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature complement(order(186067..186069,186076..186081, 186088..186090,186244..186246,186472..186474, 186481..186486,186520..186522,186526..186531, 186538..186540,186547..186552,186559..186564, 186571..186576,186580..186582,186766..186768, 186781..186783,186787..186789)) /gene="feuC" /locus_tag="BAMF_0165" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(186097..186099,186124..186126, 186256..186258,186268..186270,186442..186444, 186520..186522)) /gene="feuC" /locus_tag="BAMF_0165" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene complement(187028..188035) /gene="feuB" /locus_tag="BAMF_0166" /db_xref="GeneID:9778785" CDS complement(187028..188035) /gene="feuB" /locus_tag="BAMF_0166" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="iron-uptake protein" /protein_id="YP_003918762.1" /db_xref="GI:308172057" /db_xref="GeneID:9778785" /translation="MYAKRRTHIIIIASPIAIVLSLLLSVLYGAKQLDVHTVFSALLH FNPENTDHQIIWHSRIPRAAGAMFIGAALAVSGALMQGITRNYLASPSIMGVSDGSAF IITLCMVLLPQSTSIEMIIYSFIGSAFGAALVFGLASILPGGFTPVQLAIIGTVTSML LSSLSAALSIYFQISQDLSFWYSARLHQMNPDFLKLAVPFFAIGIITAMILSKKVTAV SLGDDISKSLGQQKRTIKLMAMAAVVILTGSSVALAGKIAFVGLVVPHITRFLVGSDY SRLIPCACIIGGVFLTFCDLASRLINYPFETPIEVVTSIIGVPFFLYLIKRKGGDQRG A" misc_feature complement(187049..187924) /gene="feuB" /locus_tag="BAMF_0166" /note="ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]; Region: CeuC; COG4605" /db_xref="CDD:34236" misc_feature complement(187061..187813) /gene="feuB" /locus_tag="BAMF_0166" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature complement(order(187208..187210,187229..187231, 187352..187360,187364..187381,187385..187390, 187394..187402,187406..187411,187775..187783, 187793..187795)) /gene="feuB" /locus_tag="BAMF_0166" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature complement(order(187061..187063,187070..187075, 187082..187084,187091..187096,187103..187105, 187259..187261,187487..187489,187496..187501, 187529..187531,187535..187540,187547..187549, 187556..187561,187568..187573,187580..187585, 187589..187591,187757..187759,187772..187774, 187778..187780)) /gene="feuB" /locus_tag="BAMF_0166" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(187112..187114,187139..187141, 187271..187273,187283..187285,187457..187459, 187529..187531)) /gene="feuB" /locus_tag="BAMF_0166" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene complement(188055..189011) /gene="feuA" /locus_tag="BAMF_0167" /db_xref="GeneID:9778784" CDS complement(188055..189011) /gene="feuA" /locus_tag="BAMF_0167" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="iron hydroxamate-binding lipoprotein" /protein_id="YP_003918763.1" /db_xref="GI:308172058" /db_xref="GeneID:9778784" /translation="MKKLAFAFMILLLAFTAAACGSSETSDTASKGKDASSDKKKIEY LGKTYEVKAPTDKIAITGSVESMEDAKLLDVHPAGAISFSGKFPELFKDITDKSVSTG EKMQPNMEKILELQPDVILASTKFPEKTLKKLSGTAETIPVSHISSNWKENMMLLAQL TGKEKKAKEIIADYEQDLKKTKTKINSKAKQSNALVIRIRQGNIYIYPEQVYFNSTLY GDLGLKAPAEVKAAKAQELISLEKLSEMNPDHIFVQFSDDENADKPDALKDLEKNPIW KSLTAVKKDHVYVNTIDPLAQGGTSWSKIRFLQVAADKLTQD" misc_feature complement(188118..188873) /gene="feuA" /locus_tag="BAMF_0167" /note="Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a...; Region: FeuA; cd01138" /db_xref="CDD:29741" misc_feature complement(order(188307..188309,188397..188399, 188637..188639,188643..188645,188700..188702, 188763..188765,188817..188822)) /gene="feuA" /locus_tag="BAMF_0167" /note="putative ligand binding residues [chemical binding]; other site" /db_xref="CDD:29741" gene complement(189099..190694) /gene="btr" /locus_tag="BAMF_0168" /db_xref="GeneID:9778783" CDS complement(189099..190694) /gene="btr" /locus_tag="BAMF_0168" /function="ABC-type Fe3+-hydroxamate transport system, periplasmic component" /note="Uncharacterized HTH-type transcriptional regulator ybbB;, Periplasmic binding protein, Periplasmic binding protein" /codon_start=1 /transl_table=11 /product="transcriptional activator" /protein_id="YP_003918764.1" /db_xref="GI:308172059" /db_xref="GeneID:9778783" /translation="MKNTLFFHPIDIISVKKTADLLSEHQLTDSPVLIFHVKGEGKID IGTDSVPLQKETLYICPRDETFNIDPMPSDGIHLYIVRLRVFSYFSDEEAMLPVNGGD IFHGLQQMNLQTVEHLTSRLQSLSENVQSADALQKMKSTADFQQLMYDLYAAKVCHQN NTKAAIEQTKQFIHAQFATKITLTQLAQMAGISPKHYSESFKKLYGQSVTEYITDIRM TNAKKLMAKASCKLREIAHQIGYQDEFYFSRIFKKHTGSSPTSYMKKRRTKMAAYGKE MMGHLIPLHHVPYAAALHPKWTAYYYKQFSSDIPVHLSAYRYNADWEENLHTLSQAAP DIIFSLDSVSEEEKQRLNDITEVFYLPTQDNWRDQFLRTAAYLNEEQEAKHWLEAYQS LAQSAKDSLQNVRHQRFLFVRVYKENMYIAHNNSIEEVFFGDLGFASAKPESFAPDEK ISLDMLADCQADCIMLFTCKEPETLRYFQRIQQTEIWQNLRAVSNKRVFPISSDPWIE YSPSGHQRIIEQSISIFSEDRPW" misc_feature complement(189906..190157) /gene="btr" /locus_tag="BAMF_0168" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature complement(189903..>190004) /gene="btr" /locus_tag="BAMF_0168" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" misc_feature complement(189156..189923) /gene="btr" /locus_tag="BAMF_0168" /note="Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface...; Region: TroA-like; cl00262" /db_xref="CDD:193735" misc_feature complement(order(189570..189572,189636..189638, 189648..189653)) /gene="btr" /locus_tag="BAMF_0168" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:29734" gene complement(190833..192077) /gene="ybbC" /locus_tag="BAMF_0169" /db_xref="GeneID:9778461" CDS complement(190833..192077) /gene="ybbC" /locus_tag="BAMF_0169" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918765.1" /db_xref="GI:308172060" /db_xref="GeneID:9778461" /translation="MKTQTAALLAGLVVISAMTAVSAASDRNSHTAKKPSIETGIDRL LKDYKQELKGKRIGLITNPTGVNSTLKSSVDVLYEAQDIHLTALFGPEHGVRGDAQAG DKVTSYIDEKTGLPVYSLYGETRKPTPDMLKDTDVLIFDIQDVGTRYYTYIYTMAYAM EAAKEKGIPFYVLDRPNPQGGRNPDGPVLEPHYASFVGLYPIPLKHGMTIGELALLFN KEFHIGADLTVVKMKRWKRTMTIEDTGLPFVLPSPNIPTPDSIFAYSATGLIEGTNVS EGRGTTKPFELIGAPYMKSTELEERLNSLKLPGVTFRAASFIPSFSKHQGKLCHGVQV YVTNRNTFEAVKTGLSILKTMHDLYPNDFSFLPTGAFDKLIGNGWVRKKIEQSASIQD IISTYQRRLDQFEPVRKQYLIY" misc_feature complement(190836..191909) /gene="ybbC" /locus_tag="BAMF_0169" /note="Protein of unknown function (DUF1343); Region: DUF1343; cl01598" /db_xref="CDD:194174" gene complement(192093..194003) /gene="ybbD" /locus_tag="BAMF_0170" /db_xref="GeneID:9780476" CDS complement(192093..194003) /gene="ybbD" /locus_tag="BAMF_0170" /EC_number="3.2.1.52" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="beta-hexosaminidase, lipoprotein" /protein_id="YP_003918766.1" /db_xref="GI:308172061" /db_xref="GeneID:9780476" /translation="MKLVISAVLLLFIVSGTHHASTKPDIPSQAEQAVSRMTLDEKLG QMLMPDFRNWQKKGQSSPQALTQMNDEVAGLIQKYRFGGVILFEENVKSTEQTVRLTD AFQKASPDIPLLLSIDQEGGIVTRLGEGTHFPGNMALGAARKTAYASQTGAIIGKELK ALGINTNFAPVLDINNNPGNPVIGVRSFSSDRDLTASLGLASMKAQQKQDVAAAVKHF PGHGDTDVDSHYGLPLVTHSQERLRQIELYPFRKAIQAGADMIMTAHVQFPAFDDTTY KSKLDGSDILVPATLSKKVMTHLLREEMGFNGVIVTDALNMKAIADHFGQEEAVVMAV KAGVDIALMPAQVTSLQTENRFAQVLAALKKAVQKGEIPVQQINKSAERIISLKIKRG IYPAKETSLNKKVAKAKQTVGSKNHLKAEKQIAERSVTVLQNKNRTLPFKPKKNSRVL IAAPYEDQTASMEQTIRQLIKKKEIRPVTISKMNFAERTFNDEYKKLVSDADYVITGS YVVKNDPVVNDGTIDDSVTDPGKWTTAFPRAVMKSAQSNHKPFVLMSLRNPYDAANFE EAEALIAVYGFKGYADGQFLQPNIPAGIEAIFGQTKPKGRLPVDIPSVTHPGTTLYPY GFGINLKNGKPL" misc_feature complement(192564..193895) /gene="ybbD" /locus_tag="BAMF_0170" /note="Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472" /db_xref="CDD:31661" misc_feature complement(192975..193673) /gene="ybbD" /locus_tag="BAMF_0170" /note="Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; cl07971" /db_xref="CDD:186723" misc_feature complement(192117..192719) /gene="ybbD" /locus_tag="BAMF_0170" /note="Glycosyl hydrolase family 3 C terminal domain; Region: Glyco_hydro_3_C; pfam01915" /db_xref="CDD:190157" gene complement(194050..195333) /gene="ybbE" /locus_tag="BAMF_0171" /db_xref="GeneID:9780477" CDS complement(194050..195333) /gene="ybbE" /locus_tag="BAMF_0171" /function="16.13: Shape" /codon_start=1 /transl_table=11 /product="protein precursor; beta-lactamase" /protein_id="YP_003918767.1" /db_xref="GI:308172062" /db_xref="GeneID:9780477" /translation="MKTLAAAILTMVISFSFLPQHKAFAQSKLYDTAKLRKVDQMIEK DIAAGFPGAVLVVVKDGRVIKKKAYGYSKKYDGNVLLSHPKKMKTSTMFDLASNTKMY AANFALQRLVSQGKLDVYQKVSAYLPDFKDRKSDPVQGKDRIRVIDVLQHQSGLPASF YFYQPDTAGPFYSQQRDKTIRFLTQIPLEYKPGTKHVYSDIGYMLLGCIIENITGKTL NAYAEQELYKPLKLKHTLFNPLQKGFKEKAFAATERLGNTRDGAIHFPHIRTYTLQGE VHDEKAFYSMGGVSGHAGLFSRADDMAVLLQVMLNGGTYKHVSLFNKQTADLFTTTAS SDPTFALGWRKNGSPDMEWMFGPYASRQAYGHTGWTGTVTIIDPAYNLGIALLTNKKH SPVVSPGENPNVFEGDLFPTGSYGSVVKAIYEAIE" misc_feature complement(194053..195333) /gene="ybbE" /locus_tag="BAMF_0171" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" misc_feature complement(194155..195333) /gene="ybbE" /locus_tag="BAMF_0171" /note="Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]; Region: AmpC; COG1680" /db_xref="CDD:31866" gene complement(195351..196718) /gene="murP" /locus_tag="BAMF_0172" /db_xref="GeneID:9780478" CDS complement(195351..196718) /gene="murP" /locus_tag="BAMF_0172" /EC_number="2.7.1.69" /function="Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific" /note="[KO:K02809 K02810], PTS system sucrose-specific EIIBC component; EIIBC-Scr; EII-Scr; Includes: RecName: Full=Sucrose-specific phosphotransferase enzyme IIB component; PTS system sucrose-specific EIIB component; Includes: RecName: Full=Sucrose permease IIC component; PTS system sucrose-specific EIIC component;, Phosphotransferase system, EIIC component, type 1, Phosphotransferase system, EIIC, PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component" /codon_start=1 /transl_table=11 /product="N-acetyl muramic acid-specific phosphotransferase system, EIIBC component" /protein_id="YP_003918768.1" /db_xref="GI:308172063" /db_xref="GeneID:9780478" /translation="MSKEAFYHALAKDILDNCGGSSNISGFTHCMTRLRITPFDQDKT DIEALKRLDGVIGVVEAETLQIILGAGVVNHVADAFANLMSPGKNIDLKEAASRKKAD LNRKNTTPITLFLRKLSSIFIPLIPALIASGLITGITKAVIQAGWLPKESQIALILTV IGSGLFAYLGVLVGINAAKEFGGTPAMGGLAGILILNPEIANISLFGENLLPGRGGLI GVLFAAIFIAYTERLIRKYVHQSIDIIVTPTLSLLITGLVTYVVFIPVGGFISDLITS GLLSLLNVGGAVSGFVLGAAFLPLVITGLHQGLTPVHLELIRSIGDDPLLPILAMGGA GQVGAAFAIFMKTKKASLKRAIGGGLPSGLLGIGEPLIFGVTLPLGRPFLTACLGAGI GGAFQAHFQVATFSIGVSGLPLSFLVQPAQIVLYIIGLFISYAAGFVFTYAFGFTDDM AAEFD" misc_feature complement(195387..196700) /gene="murP" /locus_tag="BAMF_0172" /note="PTS system, sucrose-specific IIBC component; Region: PTS-II-BC-sucr; TIGR01996" /db_xref="CDD:131051" misc_feature complement(196467..196697) /gene="murP" /locus_tag="BAMF_0172" /note="PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIB_glc; cd00212" /db_xref="CDD:29267" misc_feature complement(196614..196634) /gene="murP" /locus_tag="BAMF_0172" /note="active site turn [active]" /db_xref="CDD:29267" misc_feature complement(196629..196631) /gene="murP" /locus_tag="BAMF_0172" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29267" misc_feature complement(195369..196406) /gene="murP" /locus_tag="BAMF_0172" /note="Phosphotransferase system, EIIC; Region: PTS_EIIC; cl00557" /db_xref="CDD:186079" gene complement(196862..197791) /gene="murQ" /locus_tag="BAMF_0173" /db_xref="GeneID:9779312" CDS complement(196862..197791) /gene="murQ" /locus_tag="BAMF_0173" /EC_number="4.2.-.-" /function="16.6: Maintain16.13: Shape16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="D-lactyl ether N-acetylmuramic-6-phosphate acid etherase" /protein_id="YP_003918769.1" /db_xref="GI:308172064" /db_xref="GeneID:9779312" /translation="MTDRLNIHRLTTETRNPETASIHQADTMEILRIINREDFKVADA VQQVLPDIEIAVQFAHQSLRRNGRLIYAGAGTSGRLGVLDAVECPPTYSVSPDTVIGL MAGGADAFLQAAEGIEDSEETGALDLKTIGLTEDDTVIAIAASGRTPYAAGALKYAKT IGAKTVALTCNKHSLISTYADHSIEVVVGPEVITGSTRMKAATAHKMILNMISTAVMI KSGKVYENLMVDVHVSNEKLKERAIGTIQSITGVPYDKARETLEASGSHVKTAIVMLK TNSDETHAKALLKEAEGFIDKAIEQHISREKNR" misc_feature complement(196889..197776) /gene="murQ" /locus_tag="BAMF_0173" /note="N-acetylmuramic acid-6-phosphate etherase; Reviewed; Region: murQ; PRK05441" /db_xref="CDD:180083" misc_feature complement(196970..197740) /gene="murQ" /locus_tag="BAMF_0173" /note="N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid...; Region: SIS_Etherase; cd05007" /db_xref="CDD:88404" misc_feature complement(order(197363..197365,197561..197563)) /gene="murQ" /locus_tag="BAMF_0173" /note="putative active site [active]" /db_xref="CDD:88404" gene complement(197815..198366) /gene="ybbJ" /locus_tag="BAMF_0174" /db_xref="GeneID:9779313" CDS complement(197815..198366) /gene="ybbJ" /locus_tag="BAMF_0174" /codon_start=1 /transl_table=11 /product="acyltransferase" /protein_id="YP_003918770.1" /db_xref="GI:308172065" /db_xref="GeneID:9779313" /translation="MDVTLSFYKPEHADRLNGFVLSEEDKMFSALPKDVLPQALVIRD RYPTVILKEDSPVGFFILHTSKETIAPYSNNVSAILLSALSLHASQQGKGYAKQAMLQ LPAFIANYFPWCDEIVLAVNHPIIVHRTCTGLPVLLIKGGAGSARSANSTFCIIFCES VSLFIFSLPIFLETYIQKPIYFK" gene complement(198385..198837) /gene="ybbK" /locus_tag="BAMF_0175" /db_xref="GeneID:9780479" CDS complement(198385..198837) /gene="ybbK" /locus_tag="BAMF_0175" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918771.1" /db_xref="GI:308172066" /db_xref="GeneID:9780479" /translation="MILVSSCLGGIECRYNGSHAASEKILRLVDEKKAVMVCPELLGG FTTPREPAEIIGGTGEDVLNGTAKIVTASGEDVTALYMAGAEKTLAYAKEIGDGTVIL KENSPSCGSSFIYDGTFSGKKITGDGITSALLKRAGCRVLSEDELDQL" misc_feature complement(198394..198837) /gene="ybbK" /locus_tag="BAMF_0175" /note="Protein of unknown function (DUF523); Region: DUF523; cl00733" /db_xref="CDD:153961" gene 199019..199090 /locus_tag="BAMF__t24" /db_xref="GeneID:9780480" tRNA 199019..199090 /locus_tag="BAMF__t24" /product="tRNA-Glu" /anticodon=(pos:199052..199054,aa:Glu) /codon_recognized="GAA" /db_xref="GeneID:9780480" gene 199094..199169 /locus_tag="BAMF__t25" /db_xref="GeneID:9778197" tRNA 199094..199169 /locus_tag="BAMF__t25" /product="tRNA-Val" /anticodon=(pos:199127..199129,aa:Val) /codon_recognized="GUA" /db_xref="GeneID:9778197" gene 199175..199247 /locus_tag="BAMF__t26" /db_xref="GeneID:9778198" tRNA 199175..199247 /locus_tag="BAMF__t26" /product="tRNA-Thr" /anticodon=(pos:199208..199210,aa:Thr) /codon_recognized="ACA" /db_xref="GeneID:9778198" gene 199267..199351 /locus_tag="BAMF__t27" /db_xref="GeneID:9778199" tRNA 199267..199351 /locus_tag="BAMF__t27" /product="tRNA-Tyr" /anticodon=(pos:199301..199303,aa:Tyr) /codon_recognized="UAC" /db_xref="GeneID:9778199" gene 199356..199427 /locus_tag="BAMF__t28" /db_xref="GeneID:9778200" tRNA 199356..199427 /locus_tag="BAMF__t28" /product="tRNA-Gln" /anticodon=(pos:199388..199390,aa:Gln) /codon_recognized="CAA" /db_xref="GeneID:9778200" gene 199660..200223 /gene="sigW" /locus_tag="BAMF_0176" /db_xref="GeneID:9778201" CDS 199660..200223 /gene="sigW" /locus_tag="BAMF_0176" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="RNA polymerase ECF(extracytoplasmic function)-type sigma factor W" /protein_id="YP_003918772.1" /db_xref="GI:308172067" /db_xref="GeneID:9778201" /translation="MENLIKKRIKQVKKGDQNAFAEIVDLYKDKIYQLCYRMLGNVHE AEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGAE GLTMYSQIAADGVLPEDAVLSLELSDTIQKKILKLPDKYRTVIVLKYIDELSLIEIGE ILNIPVGTVKTRIHRGREALRKQLRDL" misc_feature 199660..200220 /gene="sigW" /locus_tag="BAMF_0176" /note="RNA polymerase sigma factor SigW; Provisional; Region: PRK09641" /db_xref="CDD:182012" misc_feature 199726..199926 /gene="sigW" /locus_tag="BAMF_0176" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature 200047..200202 /gene="sigW" /locus_tag="BAMF_0176" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature order(200071..200073,200101..200103,200119..200124, 200152..200154,200158..200163,200167..200175, 200179..200184,200188..200190) /gene="sigW" /locus_tag="BAMF_0176" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene 200237..200863 /gene="rsiW" /locus_tag="BAMF_0177" /db_xref="GeneID:9780094" CDS 200237..200863 /gene="rsiW" /locus_tag="BAMF_0177" /function="Predicted transmembrane transcriptional regulator (anti-sigma factor)" /codon_start=1 /transl_table=11 /product="Anti-sigma-W factor rsiW" /protein_id="YP_003918773.1" /db_xref="GI:308172068" /db_xref="GeneID:9780094" /translation="MSCPEQIVQLMHKHLDGDILPEDENVLKQHLRSCENCKRHFHEM EKSVALVRSTSHVTAPADFTAKVMANLPKEKKRASVKRWIKTHPIIAAAAVFVILMGG GFFNSWHNDHNFSVSKHPNLVVQNHTVTVPEGETVKGDVTVKNGKLVIKGKVDGNVTV VNGEKYMASAGQVTGQIEEINQLFDWVWYELKSAGQGVVSALDPNEDE" misc_feature 200240..200449 /gene="rsiW" /locus_tag="BAMF_0177" /note="mycothiol system anti-sigma-R factor; Region: antisig_RsrA; cl11829" /db_xref="CDD:189233" misc_feature <200603..200767 /gene="rsiW" /locus_tag="BAMF_0177" /note="Polymer-forming cytoskeletal; Region: Bactofilin; cl09137" /db_xref="CDD:195802" gene 201029..201850 /gene="ybbP" /locus_tag="BAMF_0178" /db_xref="GeneID:9780039" CDS 201029..201850 /gene="ybbP" /locus_tag="BAMF_0178" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918774.1" /db_xref="GI:308172069" /db_xref="GeneID:9780039" /translation="MAFEDIPFLQYLGNAVDILLVWYVIYKLIMVIRGTKAVQLLKGI VVIVLVRMASSYLGLSTLQWLMDQAITWGFLAIIIIFQPELRRALEQLGRGRFFSRSG TPVEEAQHKTIEAITKSISYMAKRRIGALIAIERDTGMGDYIETGIPLNAQVSSELLI NIFIPNTPLHDGAVIMKNNEIAAAACYLPLSESPFISKELGTRHRAAVGISEVTDSLT IIVSEETGAISVAKNGDLRRELTEEALKEMLEAEFKKNARDTSSNRWYWRGKKNG" misc_feature 201161..201796 /gene="ybbP" /locus_tag="BAMF_0178" /note="TIGR00159 family protein; Region: TIGR00159" /db_xref="CDD:129263" misc_feature 201374..201736 /gene="ybbP" /locus_tag="BAMF_0178" /note="DisA bacterial checkpoint controller nucleotide-binding; Region: DisA_N; pfam02457" /db_xref="CDD:190315" gene 201843..203273 /gene="ybbR" /locus_tag="BAMF_0179" /db_xref="GeneID:9780481" CDS 201843..203273 /gene="ybbR" /locus_tag="BAMF_0179" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918775.1" /db_xref="GI:308172070" /db_xref="GeneID:9780481" /translation="MDKFLNNRWAVKIIALLFALLLYVAVNNNQAPTPKKPGESFFPT STTDEATLTDIPVKAYYDEANYVVTGVPQTVNVTIKGSTSAVKKARQTKNFEIYADMN KLKTGTHKVELKAKNVSDGLTISINPSVTTVTIQEKTAESFPVEVEYYNKSKMKKGYT PQQPIISPKNVQITGSKNVIDNISLVKASVNLENANETIDREVKVTVYDKDGNALPVD VEPSVIKVTVPVASPSKKLPFKIERKGSLPDGVSIASIDSNPSEVTVYGPQDVLDSLE FIDGVSLDLDKIDKDTDVDADIPLPKGVTKVSPGKITLHVKVDSEDKKDFSNVPIKTV GLGGSQRIEFLDPESRAINITAKGSPSNIKALKKSDIELYANVSGLDDGEHSVKLEVN GPQNVTWSLSKDTVKIRLTSKKNTSSNKNDGGSADSGNKDGTSGGADKDKNQEDTDSD QNKSQNQDQNQDQDEDGSSADSSSTE" misc_feature 201843..203084 /gene="ybbR" /locus_tag="BAMF_0179" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4856" /db_xref="CDD:34465" misc_feature 202275..202526 /gene="ybbR" /locus_tag="BAMF_0179" /note="YbbR-like protein; Region: YbbR; pfam07949" /db_xref="CDD:191904" misc_feature 202554..202790 /gene="ybbR" /locus_tag="BAMF_0179" /note="YbbR-like protein; Region: YbbR; pfam07949" /db_xref="CDD:191904" gene 203291..204637 /gene="glmM" /locus_tag="BAMF_0180" /db_xref="GeneID:9780482" CDS 203291..204637 /gene="glmM" /locus_tag="BAMF_0180" /EC_number="5.4.2.10" /note="'intermediary metabolism; Metabolism of carbohydrates and related molecules; Main glycolytic pathways'" /codon_start=1 /transl_table=11 /product="phosphoglucomutase GlmM" /protein_id="YP_003918776.1" /db_xref="GI:308172071" /db_xref="GeneID:9780482" /translation="MGKYFGTDGVRGVANSELTPELAFKVGRFGGYVLTKDKQRPKVL IGRDTRISGHMLEGALVAGLLSIGAEVMRLGVISTPGVSYLTKAMDAEAGVMISASHN PVQDNGIKFFGGDGFKLSDEQEAEIERLMDEPEDKLPRPTGADLGLVNDYFEGVQKYL QFLKQTADEDFTGIHVALDCAHGATSSIATHLFADLDADVSTMGTSPNGLNINDGVGS THPEALSAFVKEKNADIGLAFDGDGDRLIAVDEKGNIVDGDQIMYICAKYLKSEGRLK DDTVVSTVMSNLGFYKALEKEEIKSIQTAVGDRYVVEAMKKDGYNVGGEQSGHLIFLD YNTTGDGLLSAIMLVNTLKASGKTLSELAGEMKKFPQLLVNVKVTDKYKVEENAKVKA VISEVEKEMNGDGRILVRPSGTEPLVRVMAEARTKELCDEYVTKIVDVVRTEMGAE" misc_feature 203294..204634 /gene="glmM" /locus_tag="BAMF_0180" /note="phosphoglucosamine mutase; Provisional; Region: glmM; PRK14316" /db_xref="CDD:184616" misc_feature 203300..204604 /gene="glmM" /locus_tag="BAMF_0180" /note="GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-...; Region: GlmM; cd05802" /db_xref="CDD:100095" misc_feature order(203306..203308,203312..203314,203321..203323, 203588..203596,203618..203620,204008..204010, 204014..204016,204020..204025,204143..204145, 204206..204214,204263..204265,204269..204271, 204275..204277,204518..204520,204524..204532, 204545..204547) /gene="glmM" /locus_tag="BAMF_0180" /note="active site" /db_xref="CDD:100095" misc_feature order(203312..203314,203588..203590,204023..204025, 204143..204145,204206..204208,204212..204214, 204263..204265,204269..204271,204275..204277, 204518..204520,204524..204532,204545..204547) /gene="glmM" /locus_tag="BAMF_0180" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100095" misc_feature order(203588..203590,204008..204010,204014..204016, 204020..204022) /gene="glmM" /locus_tag="BAMF_0180" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100095" gene 205068..206870 /gene="glmS" /locus_tag="BAMF_0181" /db_xref="GeneID:9778906" CDS 205068..206870 /gene="glmS" /locus_tag="BAMF_0181" /EC_number="2.6.1.16" /function="16.13: Shape16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="L-glutamine-D-fructose-6- phosphateamidotransferase" /protein_id="YP_003918777.1" /db_xref="GI:308172072" /db_xref="GeneID:9778906" /translation="MCGIVGYIGHLDAKEILLKGLEKLEYRGYDSAGIAVANEQGVHV YKEKGRIADLREVVDQTVESQAGIGHTRWATHGEPSFLNAHPHQSALGRFTLVHNGVI ENYVQLKREYLENVELKSDTDTEVVVQMIEQFVAGGLSTEEAFRKTLTLLKGSYAIAL FDGENTDTIYVAKNKSPLLIGLGDTFNVVASDAMAMLQVTNEYVELLDKEMVIVTKDE AVIKNLDGEVMTRASYIAELDASDIEKGTYPHYMLKETDEQPLVMRKIIQTYQDENGR LAVAGDVADAVAEADRIYIVACGTSYHAGLVGKQYIEMWANVPVEVHVASEFSYNMPL LSKKPLFIFLSQSGETADSRAVLVQVKALGHKALTITNVPGSTLSREADYTLLLHAGP EIAVASTKAYTAQIAVLAILASVAAERNGVDIGFDLVKELGIAANAMEALCDQKDEME MIAREYLTVSRNAFFIGRGLDYFVCVEGALKLKEISYIQAEGFAGGELKHGTIALIEE GTPVFALATQEHVNLSIRGNVKEVAARGANTCIISLKGLEDADDRFVLPEVNPALAPL VSVVPLQLIAYYAALHRGCDVDKPRNLAKSVTVE" misc_feature 205068..206867 /gene="glmS" /locus_tag="BAMF_0181" /note="glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331" /db_xref="CDD:178980" misc_feature 205071..205709 /gene="glmS" /locus_tag="BAMF_0181" /note="Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate...; Region: GFAT; cd00714" /db_xref="CDD:48478" misc_feature order(205071..205073,205146..205148,205281..205286, 205290..205295,205320..205322,205362..205367, 205434..205439) /gene="glmS" /locus_tag="BAMF_0181" /note="glutaminase active site [active]" /db_xref="CDD:48478" misc_feature 205941..206276 /gene="glmS" /locus_tag="BAMF_0181" /note="SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008" /db_xref="CDD:88405" misc_feature order(205959..205964,205992..205997,206004..206009, 206028..206030,206034..206036,206046..206048, 206055..206057,206121..206123) /gene="glmS" /locus_tag="BAMF_0181" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88405" misc_feature order(205965..205970,206100..206108) /gene="glmS" /locus_tag="BAMF_0181" /note="active site" /db_xref="CDD:88405" misc_feature 206406..206861 /gene="glmS" /locus_tag="BAMF_0181" /note="SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009" /db_xref="CDD:88406" misc_feature order(206472..206474,206514..206516,206526..206528, 206532..206534,206538..206540,206544..206546, 206556..206558,206562..206570,206574..206585, 206634..206639,206649..206651,206655..206660, 206838..206843,206856..206858) /gene="glmS" /locus_tag="BAMF_0181" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88406" misc_feature order(206508..206510,206517..206519) /gene="glmS" /locus_tag="BAMF_0181" /note="active site" /db_xref="CDD:88406" gene 207284..207844 /locus_tag="BAMF_0182" /db_xref="GeneID:9778907" CDS 207284..207844 /locus_tag="BAMF_0182" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918778.1" /db_xref="GI:308172073" /db_xref="GeneID:9778907" /translation="MSFIDYQLEMTLNGYFLRGGIDLGDYYGDDDFAYGPALIEAHDL ESSKAIYPRIILSDEMIKMVSQHLGYYGSASYAPQNSHLLIDEDDKVFVNYLYGLHEI YNTTEDIMEYIQKIQSHKDIILTKLNHFKSDKKLYSKYEWVAQYHNYYCDEYFEKNAI QQFNLKIPSIQTRNFSRIAISDLILI" misc_feature <207410..>207679 /locus_tag="BAMF_0182" /note="Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes; Region: Motor_domain; cl00286" /db_xref="CDD:176419" gene 208354..213054 /locus_tag="BAMF_0183" /db_xref="GeneID:9777899" CDS 208354..213054 /locus_tag="BAMF_0183" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918779.1" /db_xref="GI:308172074" /db_xref="GeneID:9777899" /translation="MYKDIAINWDVFQYKFTEKTRDVFEYLAYILFCHEFKIETGIFR YFNQPYVETLPVTTEEGCIGFQAKYYDAGTSIADKKTELKNAIKGAKTKYPEIDRFII YTNKELSASSKKDTVKPEYQTEIEEYGLERDILVEWRVKSNFEIMLMRPELELIRDYF FNPDSGIKGYLAQVKLHSQSKLENIKSTIRYRDQIIKINKNNDFDIHSFYESEIPCLI IYGEGGSGKSGFAKDLLENENRANIAFKATDFDVTTFAEFSRRFGEYTFEDYLKLFQD DENKVCLIDSTEKVLVMNNRDIFNEFVNLSIKYGWKIIFTVRTVHKDNFINTFLNGVR YQELKIETLSKQELQYLLKDSDFPLPKEESYINLICNLFYLNLYIEIACESDSDILTI EQFIESIWTYKIKNTNHYRELDIRREKTICNIVLSCANKGVYYYEYQLYDDSEAIAAL REDEIIFYDEVMRGYSLSHDIYEEIVLKHIFENLYIKKEDCKSFFEEIGDSLVVRKNL RLWLKDKLVQKTEGIKDFIIEVFYTSKISSIWQDEILITLMSIEDNQISINFIKSMLT RDEYKLLFRAIFLLNTTCRIINNDFWNKILTSEEQKSANLYRSTKPTGAGWGYIFNFI YENLTAIEWKPQNIMLVIECLYSWTSHNVKGIETKHACLIALYLYNKVKADKSLIYKL NDKKIEKINNVILSSAWEIDSELSIIVEEVTTDTDFNHLHKYYDLCVQGLTNVYNCGN LVDSNPKLVFDLANKYWFFKDSMFYSPREIEDAFKLNDSTSHDYYPSSAFQTPIFRLL QSSPWETIDFIIELFNKITIDYSNSELVEKYDELLTIKINLSNGKEIEQVASERLWLM HRGTYPAPNLLESILMALERWLLLVLEEIPGVIEKICIKLLSSQSAALTSVVVSLVEA YPQKLFNIACILISSKEVFILDNIRAVKEFGSNFLKGVVPANKLYEDERIRTNNQAFR KKRLEDVILEYQLNLEKLPIEVLENRNKILYSQLDKVFEKIEQFEEEYQFVYYRMDIR KLKLDTDNFFEKDGHTYASLVTELPASLVEIHNKTEEKNRKIFNRNDLYMWSIARFEH KRDSEKYIDYENNPLKALGEAREIWESENNEYFYLQKYAPIYVFAILIRDYKELISED DCHYCKDSILNFIELNIESGNVIQTGSGFEAAIYILPLIISNEDMSDISLKKSIELLL ILILDSNKLVIQTFSTKMWETNFKIASGIFCGYVELKPLYDSEVRIYNGISSIEFINK NQHVINNIIKNVYAIPNDFSHLSYNSLLNLNMLLAPTNEITVMKSIEIGKNIWEILFE KRHKRREDVVANIETEMEYIKWLAKYLMCISLEEQKKLIRAFEPFINSCESFEWLLRD IILKQDEMDKYDEFWNIWNNIQPIIISLCKKTEERDRTVSSREYHDDIHQIVITYLFA FHWWNDKIKSWHSLKKDDHLFFRYISYELGYKPGVLYAIGRVLNTVGYNNYLSQGIDW LYEIINNNPHLEQKKLEVNTEYYIEEYMQRYILENRLSFKKKPALRNKVIVVLNFLVN RGSTVSYMLRESIV" gene 213226..213621 /gene="RBAM_002340" /locus_tag="BAMF_0184" /db_xref="GeneID:9777900" CDS 213226..213621 /gene="RBAM_002340" /locus_tag="BAMF_0184" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_003918780.1" /db_xref="GI:308172075" /db_xref="GeneID:9777900" /translation="MVVVIGAVISYGIFFVYSLSAEEPVDGILNIVSFGTFIVLFAGA IVYPLLYIMGPEKSDAIVIGGAMGGLFTTFGLQSVVGYVTEKLPLSFLHINPSLYVPI IYIIIGVILYIISFFIAAAIYRKKEFTTG" gene complement(213698..214579) /gene="fbpB1" /locus_tag="BAMF_0185" /db_xref="GeneID:9779688" CDS complement(213698..214579) /gene="fbpB1" /locus_tag="BAMF_0185" /codon_start=1 /transl_table=11 /product="Fur-regulated RNA chaperone" /protein_id="YP_003918781.1" /db_xref="GI:308172076" /db_xref="GeneID:9779688" /translation="MKKCILILFVSVIVLSGALFASSPSASASQKNSLQISAITGNHS FETANPAGYWKYKNIDTAILPKGEKDSYFTFTANKGERLYVRSSTRSEYKGMDIEIYN KNKVLISKGTEVINPDTALPFIYANTDAKENNETFYVKVSRGSYTDDMYFTLSIYDRI KSGSETFSFSGTAENKGNTNLSPNGSDSTVLRLDLTKQTSIPRDATVKRINTTATQTP SQGNTSHYMMSEENKVWHRALANSSTQGNYGITLDDNLSVSSIWNFKYNTLATAKSTM KNVKLKIDYEYDVTTQF" gene 214714..215880 /gene="ybdO1" /locus_tag="BAMF_0186" /db_xref="GeneID:9778776" CDS 214714..215880 /gene="ybdO1" /locus_tag="BAMF_0186" /note="Uncharacterized protein ybdO" /codon_start=1 /transl_table=11 /product="cation efflux system" /protein_id="YP_003918782.1" /db_xref="GI:308172077" /db_xref="GeneID:9778776" /translation="MRLNARYIKNQVMAQQVLQRYSSKTNVKDAAKGTDSLLIQAGGS RDLSQVNYSTSGVTEKGSSLSRLYQSANQKTMTDNGNETVIQANNPYESESDIASKIL NEKYSRINEINKRKPDPLGYIKDKYQRANSPYFRSDLSESERQAAYHNETEWLFKGKA QSYDFRDAAFRGETLSGEIEGENEKVFQRGQVNQQIEMLFHRNHIQIPEGANLTFTIS PIDYLLKVSGTDDEELTKQIEAVLNSGENSKELFAHIIRSRSDDSSQFTAEAYEKYQV VREMYEVTGYHLKDLQIVNGKYVTEDGRDLLDVYKEALQQDPLLKHTAAEAAAHYGQG LTKLARTGYDAIPDLVLSIDYRDGSLRDVGQRKQYGSGGTDWLSEWKRQLGVRI" gene complement(215931..216776) /gene="kdgR1" /locus_tag="BAMF_0187" /db_xref="GeneID:9780485" CDS complement(215931..216776) /gene="kdgR1" /locus_tag="BAMF_0187" /EC_number="1.1.1.274" /function="Aldo/keto reductases, related to diketogulonate reductase" /note="Aldo-keto reductase family 1 member C1 homolog; 20-alpha-hydroxysteroid dehydrogenase; 20-alpha-HSD; Dihydrodiol dehydrogenase 1; DD-1; DD1;, Aldo/keto reductase, Aldo/keto reductase family" /codon_start=1 /transl_table=11 /product="2,5-diketo-D-gluconate reductase" /protein_id="YP_003918783.1" /db_xref="GI:308172078" /db_xref="GeneID:9780485" /translation="MMTAAIPQKKLLDGTSIPAIGFGTYALNGNNGVHAVNSAIDIGY RLIDTAYNYENEGMVGEAIRRSSVPREQLYVTSKLPGRYHEYDKAVQTIQESLYRAGL DYYDLYLVHWPNPKQDRYTEAWQALIDAKKWGLIRSIGVCNFLPEHIERLERETGVKP GINQIELHPAFNQQQQRQWHEEQGIVTESWSPLSRAGEVLNDQKLGQIADKYGKTISQ VILRWHIQLGAIPIPKSASPERQLENISVFDFSLDENDMKIIDSLTRPDGRINGQDPA EYEEF" misc_feature complement(215988..216740) /gene="kdgR1" /locus_tag="BAMF_0187" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature complement(215982..216722) /gene="kdgR1" /locus_tag="BAMF_0187" /note="Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248" /db_xref="CDD:189468" misc_feature complement(order(216045..216050,216057..216059, 216072..216083,216126..216128,216192..216209, 216285..216287,216348..216353,216441..216446, 216543..216545,216618..216620,216633..216635, 216702..216710)) /gene="kdgR1" /locus_tag="BAMF_0187" /note="active site" /db_xref="CDD:119408" misc_feature complement(order(216444..216446,216543..216545, 216618..216620,216633..216635)) /gene="kdgR1" /locus_tag="BAMF_0187" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene complement(216887..217579) /gene="yxaC" /locus_tag="BAMF_0188" /db_xref="GeneID:9779090" CDS complement(216887..217579) /gene="yxaC" /locus_tag="BAMF_0188" /function="effector of murein hydrolase" /note="Uncharacterized protein yxaC;, LrgB-like protein, LrgB-like family, TIGR00659: conserved hypothetical protein TIGR00659" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918784.1" /db_xref="GI:308172079" /db_xref="GeneID:9779090" /translation="MQQTCIAILIILFTAAAYLAMVKLYVRFPYPFLIPVLTTTIFII AVLLVFHISYKEYMIGGQWINSLLGPAVVALAYPLYKQRRMLIKYMFPIIGGVLAGLF SGMVSGLLFAELFGISRSLILSIIPKSITTPVAIQIASGIGGVPSMTVVFVMIAGFSG VILGPLLLKWIRIRSSLGKGIAFGSASHALGTSKAMEYGELTVSMSSVSMTLCAVLGS VFGPVVAWMFQI" misc_feature complement(216905..217516) /gene="yxaC" /locus_tag="BAMF_0188" /note="LrgB-like family; Region: LrgB; cl00596" /db_xref="CDD:186096" gene complement(217549..218046) /gene="yxzK" /locus_tag="BAMF_0189" /db_xref="GeneID:9781854" CDS complement(217549..218046) /gene="yxzK" /locus_tag="BAMF_0189" /function="effector of murein hydrolase LrgA" /note="UPF0299 membrane protein YE2790;, LrgA, LrgA family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918785.1" /db_xref="GI:308172080" /db_xref="GeneID:9781854" /translation="MYSTNICTKSKETYRSNKKGGSCSSPKNSIVVKVIRIILQIIIL FAFSFIGGAIQQLCHLPIPGSIIGLILLIICLSVKIIPVKMIEDGAGFLLSFLPLLFI PAMTGVINYPSLFSASGVALFLIVVLSTLVTMIAAGYASQLLEHKANQRKEKKKCSKH VSQSL" misc_feature complement(217579..217917) /gene="yxzK" /locus_tag="BAMF_0189" /note="LrgA family; Region: LrgA; cl00608" /db_xref="CDD:186103" gene 218149..218580 /gene="yxaD" /locus_tag="BAMF_0190" /db_xref="GeneID:9781905" CDS 218149..218580 /gene="yxaD" /locus_tag="BAMF_0190" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator" /protein_id="YP_003918786.1" /db_xref="GI:308172081" /db_xref="GeneID:9781905" /translation="MSKQDPIELIEYELTTFIRRAVYLDNSDRKIGNLERASYLLLRQ LDEFGPARVKELAESFKLDISTLSRQAAALEAKELIQRLSDPSDGRVSLFTITKLGRQ RLKADKKMRLDRYERMLDDWSGDEKEMFGRLLLRLNEAFID" misc_feature 218245..218529 /gene="yxaD" /locus_tag="BAMF_0190" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 218921..220390 /gene="ybxG" /locus_tag="BAMF_0191" /db_xref="GeneID:9781855" CDS 218921..220390 /gene="ybxG" /locus_tag="BAMF_0191" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="amino acid permease" /protein_id="YP_003918787.1" /db_xref="GI:308172082" /db_xref="GeneID:9781855" /translation="MKIELGSNRCTFCFIISHISELLRGGSEVANKELKRGLGARHIQ MIALGGTIGVGLFMGSSSTIEWTGPSVLLAYAISGIFIFFIMRAMGEMLYVEPSTGSF ATFGHKYIHPLAGYMTAWSNWFQWVIVGMSEIIAVGSYMKYWFPDLPAWIPGIIAMAI LGAANLISVKSFGEFEFWFAMIKIVTIILMIVAGIGIIFFGFGNGGHAIGLSNLWSHG GFFTNGFSGFFFALSLVIAAYQGVELIGITAGEAKDPQKTLRSAIQSIIWRILIFYIG AIFVIVTVYPWDELHSLGSPFVSTFAKVGITAAAGLINFVVITAAMSGCNSGIFSAGR MLYTLGVNGQAPKFFKKVSSSGVPIFGTLAVLIGLVIGVVLNYIAPPKIFVYVYSASV LPGMIPWFVILISHLGFRRAKGAELDKHPFKMPFAPVTNYLAIAFLLMVLVGMWFNKD TRISLVVGVIFLAIVTVSYYAFGIGKRMPDEESKIEDAV" misc_feature 219011..220384 /gene="ybxG" /locus_tag="BAMF_0191" /note="Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:30877" misc_feature 219014..220372 /gene="ybxG" /locus_tag="BAMF_0191" /note="Transmembrane amino acid transporter protein; Region: Aa_trans; cl00524" /db_xref="CDD:193853" gene 220482..221195 /gene="yfnB" /locus_tag="BAMF_0192" /db_xref="GeneID:9780501" CDS 220482..221195 /gene="yfnB" /locus_tag="BAMF_0192" /EC_number="3.-.-.-" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="YP_003918788.1" /db_xref="GI:308172083" /db_xref="GeneID:9780501" /translation="MSHYRTLLFDIDNTLLDFTASETDALQKLFQGSKLDLTAEVEAR YKALNQGLWKAFEEGEMTRDEVVNTRFALLFKEYGLEADGVLMNQTYRQYLEEGHQMI DGAYELIERLSPSFDLYIVTNGVSRSQYKRLGDSGLYPFFKDVFVSEDTGFQKPMKEY FDYVFARIPGFSAEHGLIIGDSLSADIKGGQMAGIDTCWFNPGKKENESGIIPTYEIQ SLDELYDVLKVERKAAAHL" misc_feature 220482..221171 /gene="yfnB" /locus_tag="BAMF_0192" /note="Predicted hydrolase (HAD superfamily) [General function prediction only]; Region: COG1011" /db_xref="CDD:31215" misc_feature 220728..221081 /gene="yfnB" /locus_tag="BAMF_0192" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature order(220728..220730,220845..220850) /gene="yfnB" /locus_tag="BAMF_0192" /note="active site" /db_xref="CDD:119389" misc_feature 220728..220739 /gene="yfnB" /locus_tag="BAMF_0192" /note="motif I; other site" /db_xref="CDD:119389" misc_feature 220845..220847 /gene="yfnB" /locus_tag="BAMF_0192" /note="motif II; other site" /db_xref="CDD:119389" gene 221209..222321 /gene="RBAM_002480" /locus_tag="BAMF_0193" /db_xref="GeneID:9780759" CDS 221209..222321 /gene="RBAM_002480" /locus_tag="BAMF_0193" /EC_number="2.7.13.3" /function="Signal transduction histidine kinase" /note="Sensor histidine kinase desK;, Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region, Histidine kinase" /codon_start=1 /transl_table=11 /product="Sensor histidine kinase" /protein_id="YP_003918789.1" /db_xref="GI:308172084" /db_xref="GeneID:9780759" /translation="MKIAHTKLLIRGFALLSIFHTILQLPSGRGDLKVFLSALVVLLT ANDCLRPIYMKRRPAIYHGSFLLSNVMAGFLLYNVYCAGTQAIMVLLLVEVLITDHQI SAVLVTVNAAAFGGALYAAGAGVSDIVLPYFIMFAVIYLYRKNLQEKSKVELLNRELK TANATLKEYSDRIEELAVTKERTRIAQELHDSLGHYLAALKMNLEFAGKTAGHQLIHK AHDLTKESILKLRQAVTLLQGSLSGREFEQALRDIFSHFQEAGSIRFELEMDAAIEAA QPDVKHCLYQSVQETITNAMKHGHASYVSVRIQKDRNMIAAHIHNNGSACGTIIKSNG LKGIEKRAAALGGEAVFSSGNETGFDVKIRIPCKEE" misc_feature 221749..221922 /gene="RBAM_002480" /locus_tag="BAMF_0193" /note="Histidine kinase; Region: HisKA_3; pfam07730" /db_xref="CDD:191831" misc_feature 222058..222306 /gene="RBAM_002480" /locus_tag="BAMF_0193" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene 222326..222970 /gene="RBAM_002490" /locus_tag="BAMF_0194" /db_xref="GeneID:9779689" CDS 222326..222970 /gene="RBAM_002490" /locus_tag="BAMF_0194" /EC_number="3.1.1.61" /function="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /note="Transcriptional regulatory protein ydfI;, Signal transduction response regulator, receiver region, Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="two-component response regulator" /protein_id="YP_003918790.1" /db_xref="GI:308172085" /db_xref="GeneID:9779689" /translation="MNVMIADDQSIVREGLKMILSLHEGIEVSGEASCGEEVLNLLPQ TETDVILMDIRMPGMDGIEATKAVKDRYPSVKVIILTTFEDGHYIFAGLKSGADGYIL KDADSDEIVASLKAVCEGNMMLNPKVTVQVVKALNHMDIPAVQEEPKSNLTEILTPRE LDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVTNRTELTLYLQKMI" misc_feature 222326..222964 /gene="RBAM_002490" /locus_tag="BAMF_0194" /note="Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197" /db_xref="CDD:32379" misc_feature 222335..222676 /gene="RBAM_002490" /locus_tag="BAMF_0194" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(222344..222349,222482..222484,222506..222508, 222566..222568,222623..222625,222632..222637) /gene="RBAM_002490" /locus_tag="BAMF_0194" /note="active site" /db_xref="CDD:29071" misc_feature 222482..222484 /gene="RBAM_002490" /locus_tag="BAMF_0194" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(222491..222496,222500..222508) /gene="RBAM_002490" /locus_tag="BAMF_0194" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 222632..222640 /gene="RBAM_002490" /locus_tag="BAMF_0194" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 222791..222952 /gene="RBAM_002490" /locus_tag="BAMF_0194" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(222794..222802,222839..222847,222869..222874, 222878..222883,222887..222901,222932..222934) /gene="RBAM_002490" /locus_tag="BAMF_0194" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(222827..222829,222833..222835,222839..222841, 222932..222940,222947..222949) /gene="RBAM_002490" /locus_tag="BAMF_0194" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 223109..224044 /gene="yfiL" /locus_tag="BAMF_0195" /db_xref="GeneID:9779690" CDS 223109..224044 /gene="yfiL" /locus_tag="BAMF_0195" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_003918791.1" /db_xref="GI:308172086" /db_xref="GeneID:9779690" /translation="MLELTDLTKKYGDFTAVNHISLRVEKGEIFGLLGPNGAGKSTTV SMISTVLSPTGGTICIDGTPLQEQPAAIKKVMGVVPQEIALYQALSAKDNLAFFGSLY GLSGKELYKRVDEVLDIIELKEQRSQRVSEFSGGMKRRVNIGAALMNEPKLFILDEPT VGIDPQSRHHILETVKTLNQEKGMTVIYTSHYMEEVEYLCERAAIMDHGSIIACGTKD ELKQSAKASDTLIVNTEDLNDEAVQKIRRIPGVSEAAVSHQNISMLVSAADRNILDIA DDIRKTGITIKGIHFEEANLESIFLRLTGKTLRDS" misc_feature 223109..224026 /gene="yfiL" /locus_tag="BAMF_0195" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:31326" misc_feature 223112..223771 /gene="yfiL" /locus_tag="BAMF_0195" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 223208..223231 /gene="yfiL" /locus_tag="BAMF_0195" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(223217..223222,223226..223234,223349..223351, 223577..223582,223679..223681) /gene="yfiL" /locus_tag="BAMF_0195" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 223340..223351 /gene="yfiL" /locus_tag="BAMF_0195" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 223505..223534 /gene="yfiL" /locus_tag="BAMF_0195" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 223565..223582 /gene="yfiL" /locus_tag="BAMF_0195" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 223589..223600 /gene="yfiL" /locus_tag="BAMF_0195" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 223667..223687 /gene="yfiL" /locus_tag="BAMF_0195" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene 224054..225241 /gene="yfiM" /locus_tag="BAMF_0196" /db_xref="GeneID:9780707" CDS 224054..225241 /gene="yfiM" /locus_tag="BAMF_0196" /function="ABC-type multidrug transport system, permease component" /note="transport permease yfiM;, ABC-2" /codon_start=1 /transl_table=11 /product="transport permease yfiM" /protein_id="YP_003918792.1" /db_xref="GI:308172087" /db_xref="GeneID:9780707" /translation="MKTLFRLILLDFRLLTREKSFYIKLILFPALMIFILGTVFHGDS KVKSFKTAFYNADHAESSLGDALKNDVLKQNDLIRVIDISSYQEGKQLVESGKVSVFV YVPKGFAKAAENNKKTSIKVISDQQDSVNGDIVEMMADSFVTRLKAENSEEKAVLKQS GHLSKKDVSSIISGLSSEHEQAVTIPKRTAGNQAAPIDAMQYYSIAMVVMFSIMTAFA LIHGIVEERQQHTLFRIKSMPVLHIQYVAGKLLGIMFAILVQMAAVIIVSSILYQVKW GNLFEILLVTIVYSFAIGSIVLLWGVTAKNHETVSSMAAPILYGFSFLGGSFITKESL PDSLKIVQELIPNGKAINSYVSVTQHAGLSGISADLAELFAIGAVFLCLTIWVFKRKE AVS" misc_feature 224375..225211 /gene="yfiM" /locus_tag="BAMF_0196" /note="ABC-2 family transporter protein; Region: ABC2_membrane_3; pfam12698" /db_xref="CDD:193174" misc_feature 224624..225124 /gene="yfiM" /locus_tag="BAMF_0196" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene 225238..226380 /gene="yfiN1" /locus_tag="BAMF_0197" /db_xref="GeneID:9780708" CDS 225238..226380 /gene="yfiN1" /locus_tag="BAMF_0197" /function="ABC-type multidrug transport system, permease component" /note="Pleiotropic drug resistance protein 1; NtPDR1;, ABC-2 type transporter, ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="Pleiotropic drug resistance protein yfiN1" /protein_id="YP_003918793.1" /db_xref="GI:308172088" /db_xref="GeneID:9780708" /translation="MTQLLFMIRHQLKLMLQNRAAIFATISVPLLLTYFFSFSADDSQ QREVYVADADQSVFSGQFMKMIQTAGHVKVTKVTEDVLKTKVNHQDISFGLLIGSHFE ETLFSRDELNVSFIQNEEKGDAVLTEQLIAQQAGTLKKIVRDAKVMSRTLHSDGKQSA SDLLKDIQDRSAVTVDRHHVYAGGQAAGRLIGFLVMFIWFVAVQSLRSFIDEQENHTY ARLLSTPVSYTAYAISKFAAAYLFGLLHIIVILAAGKFMLHIRFADHVLAAGAVLAAC SFALTSVTMAVIPFMKSQKQFTSLASVFIAVTGLLGGAFFTLDSAPEYMRTLSLFTPE KWAIGAFQNNGGSSTQIAPLSLFLAAGAVFLALSLYLISRNMKKHG" misc_feature 225238..>226101 /gene="yfiN1" /locus_tag="BAMF_0197" /note="ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]; Region: NatB; COG1668" /db_xref="CDD:31854" misc_feature <225781..226269 /gene="yfiN1" /locus_tag="BAMF_0197" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene 226394..226573 /gene="RBAM_002530" /locus_tag="BAMF_0198" /db_xref="GeneID:9780710" CDS 226394..226573 /gene="RBAM_002530" /locus_tag="BAMF_0198" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918794.1" /db_xref="GI:308172089" /db_xref="GeneID:9780710" /translation="MYMAEVIGIIEMLAGAAMNVWIGKLGKTFFGKDDRSSRIVLRIC GIFLIINGASRAFHI" gene 226695..227153 /gene="yolA1" /locus_tag="BAMF_0199" /db_xref="GeneID:9779691" CDS 226695..227153 /gene="yolA1" /locus_tag="BAMF_0199" /note="SPBc2 prophage-derived uncharacterized protein yolA; Flags: Precursor" /codon_start=1 /transl_table=11 /product="SPBc2 prophage-derived protein YolA" /protein_id="YP_003918795.1" /db_xref="GI:308172090" /db_xref="GeneID:9779691" /translation="MLFAAAAAVLMLVSGLWAPSASAAPAPALTQIRIIGVTSDGQNY QWENIGPNQISASKPMKGTTGYLAVYFQGYPNNNTIQAFNNGTNITNLTSKALEDEYT KNGNIITGYIKYYSVPLSYVSSGTFSFSATGLNGPYTPLSSGFFSIQVQN" gene 227244..227495 /gene="csgA" /locus_tag="BAMF_0200" /db_xref="GeneID:9781205" CDS 227244..227495 /gene="csgA" /locus_tag="BAMF_0200" /function="16.5: Explore" /codon_start=1 /transl_table=11 /product="sporulation-specific SASP protein" /protein_id="YP_003918796.1" /db_xref="GI:308172091" /db_xref="GeneID:9781205" /translation="MMDKTLGYLRESLSNHLEHDVCRGIYKKLQVKHYANEGEFVKDL NDLEMDALNQVLEKEIKYAENEQDEKRTMELNEVYELLF" gene 227606..228304 /gene="yqeB" /locus_tag="BAMF_0201" /db_xref="GeneID:9778581" CDS 227606..228304 /gene="yqeB" /locus_tag="BAMF_0201" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918797.1" /db_xref="GI:308172092" /db_xref="GeneID:9778581" /translation="MNEIKKQTVLELSSVEKALVFLVPPLVGLVIGWFLPVIAKWAVS LDWLPFQGPLGIIASFHGWKAAAVTAVIGLFGGIWLTRAAFKESLVAVVTDREVSLTI HNEESVFSKDSISGVFTDQKQLVLLGAEGQELFREKLEPAVEKAADAFRGHGYVWLGT EDPFKDEYKRWVPDMPDLEPGANALLKARQKALKQDEKADAKELKAEISKLGITVRDQ GSRQYWRIYKTPSA" gene complement(228350..228610) /gene="ybyB" /locus_tag="BAMF_0202" /db_xref="GeneID:9781330" CDS complement(228350..228610) /gene="ybyB" /locus_tag="BAMF_0202" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918798.1" /db_xref="GI:308172093" /db_xref="GeneID:9781330" /translation="MKQKLLISGLAVSTVGVTSYLLKDKSNRQKVKSFIRNMKTSLSG KHDIESFPVNKAGNPHPEDIEDNKMVSEGSMYPVQYYDDKKK" gene 228795..230375 /gene="ybeC" /locus_tag="BAMF_0203" /db_xref="GeneID:9780502" CDS 228795..230375 /gene="ybeC" /locus_tag="BAMF_0203" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="H+/amino acid transporter" /protein_id="YP_003918799.1" /db_xref="GI:308172094" /db_xref="GeneID:9780502" /translation="MNQLHRRMGTFALMMVGLGSMIGSGWLFGAWRAAQIAGPAAIIS WIIGMIVILFIALSYSELGSMFPEAGGMVKYTQYSHGSFIGFIAGWANWIAIVSVIPV EAVASVQYMSSWPWDWAKWTSNLVHNGTLTGEGLGFASVLLIIYFLLNYWTVNLFSKA NSLITIFKIIIPGLTIGALLFTGFHGGNFTSGASIAPNGWASVLTAVATSGIVFAFNG FQSPINMAGEAKNPSKSIPIAVVGSLLVATVIYVLLQIAFIGAVEPSMIVHGWSHLNF NSPFADLAIALNINWLVIILYADAFVSPSGTGITYTATTSRMIYGMEKNKYMPSIFGK LHPLYGVPRQAMIFNLIVSFIFLFLFRGWGVLAEIISVATLISYITGPVTVMTLRRTA ADLYRPLRLKGLSVVAPLGFVFASLVLYWARWPLTGQVLFIILIGLPIYFYYQAKAKW KGFRRNFKGGVWMVVYLLSMMVISWLGSEKFGGLDIIPYGWDMGLIAIVALVFYTWAL KSGYQTEYLKDAKQSTIN" misc_feature 228795..230168 /gene="ybeC" /locus_tag="BAMF_0203" /note="Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:30877" misc_feature 228804..230126 /gene="ybeC" /locus_tag="BAMF_0203" /note="Transmembrane amino acid transporter protein; Region: Aa_trans; cl00524" /db_xref="CDD:193853" gene complement(231314..232198) /gene="glpQ" /locus_tag="BAMF_0204" /db_xref="GeneID:9780486" CDS complement(231314..232198) /gene="glpQ" /locus_tag="BAMF_0204" /EC_number="3.1.4.46" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="glycerophosphoryl diester phosphodiesterase" /protein_id="YP_003918800.1" /db_xref="GI:308172095" /db_xref="GeneID:9780486" /translation="MRKHKLFALVLLSFGLLSFIVTPVSAAGKGNLLSPDRILTIAHR GASGYVPEHTILSYETAQKMKADYIELDLQMTKDGKLIVMHDEKLDRTTNGHGWVKDH TLAEIQKLDAGSWFNKAYPEKAKPQYAGLRVPTLDDVLKRFGRHANYYIETKAPETYP GMEEKLIASLKKYKLAGKHAKPGQVIIQSFSKDSLLKIKKLDPKLPAVQLLEAEQLTS MTDADLTDIKTYAVGIGPDYKALNAQNVRNIRSHGLLLHPYTVNSEADMRRLLNWGVT GVFTNYADIFQKVKKEYK" misc_feature complement(231326..232087) /gene="glpQ" /locus_tag="BAMF_0204" /note="Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins; Region: GDPD_SaGlpQ_like; cd08601" /db_xref="CDD:176543" misc_feature complement(231347..232072) /gene="glpQ" /locus_tag="BAMF_0204" /note="Glycerophosphoryl diester phosphodiesterase family; Region: GDPD; pfam03009" /db_xref="CDD:145909" misc_feature complement(order(231422..231424,231635..231637, 231743..231745,231944..231946,231983..231985, 231989..231991,232070..232072)) /gene="glpQ" /locus_tag="BAMF_0204" /note="active site" /db_xref="CDD:176543" misc_feature complement(order(231944..231946,232070..232072)) /gene="glpQ" /locus_tag="BAMF_0204" /note="catalytic site [active]" /db_xref="CDD:176543" misc_feature complement(order(231743..231745,231983..231985, 231989..231991)) /gene="glpQ" /locus_tag="BAMF_0204" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176543" gene complement(232296..233630) /gene="glpT" /locus_tag="BAMF_0205" /db_xref="GeneID:9778922" CDS complement(232296..233630) /gene="glpT" /locus_tag="BAMF_0205" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate permease" /protein_id="YP_003918801.1" /db_xref="GI:308172096" /db_xref="GeneID:9778922" /translation="MFQLFKPAPHIERLDDSKTDAAYKRLRLQVFLGIFIGYAGYYLL RKNFAFAIPYHQEQGFSKGELGLVLAAVSIAYGFSKFIMGMVSDRCNPRYFLATGLFL SGVVNILFVSMPWVTSSVTIMFIFMFINGWFQGMGWPPCGRTMAHWFSISERGTKMSI WNVAHNIGGGILAPLVTLGIAMFVTWKSVFFFPAIIAIVISFVIVLLVRDTPQSCGLP PIEEYRNDYPKHAFKDQEKEMTTKEILFKYVLNNKFLWYIAFANVFVYFVRYGVVDWA PTYLTEAKGFSPEDSRWSYFLYEYAGIPGTILCGWISDRFFKSRRAPAGVLFMAGVFI AVLVYWLNPAGHPLVDNIALISIGFLIYGPVMLIGLQAIDLAPKKAAGTAAGLTGFFG YIGGSAFANAIMGYVVDRFDWNGGFIMLVTSCLLSIVFLAMTWNTGKRAEHA" misc_feature complement(232311..233621) /gene="glpT" /locus_tag="BAMF_0205" /note="glycerol-3-phosphate transporter; Region: glpT; TIGR00712" /db_xref="CDD:129795" misc_feature complement(<233070..233540) /gene="glpT" /locus_tag="BAMF_0205" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(233121..233123,233142..233147, 233154..233159,233193..233195,233202..233207, 233214..233219,233226..233231,233379..233384, 233388..233393,233403..233405,233412..233417, 233424..233426,233472..233477,233481..233489, 233496..233498)) /gene="glpT" /locus_tag="BAMF_0205" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature complement(232326..>232874) /gene="glpT" /locus_tag="BAMF_0205" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene 233966..234208 /gene="ybeF" /locus_tag="BAMF_0206" /db_xref="GeneID:9778923" CDS 233966..234208 /gene="ybeF" /locus_tag="BAMF_0206" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918802.1" /db_xref="GI:308172097" /db_xref="GeneID:9778923" /translation="MIDELDFAFGVLPLCIIILSVAGTYLFKNAFIMPAAALAVCLIC TFTVLNYSFIGWAVVYTLVSFALSHITMVVIKQNKK" misc_feature 233969..234196 /gene="ybeF" /locus_tag="BAMF_0206" /note="Protein of unknown function (DUF2651); Region: DUF2651; pfam10852" /db_xref="CDD:151301" gene complement(234263..235711) /gene="yoaI" /locus_tag="BAMF_0207" /db_xref="GeneID:9780487" CDS complement(234263..235711) /gene="yoaI" /locus_tag="BAMF_0207" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate-3-hydroxylase" /protein_id="YP_003918803.1" /db_xref="GI:308172098" /db_xref="GeneID:9780487" /translation="MMGIINGKMFIDRLNRLENEIWLDGEKIEGHISEHPAFKGLLET KRSLYDLQTKPGLKDQMTYSLPGKKERAGLSYLQPKTKEDLKRRRKMFEHWARHTHGM MGRSPDYMNTVLMSFASSAAILKDRDHCFPEHVQALYERAVAQDLSFTHTFITPQVNR SQMGVNVSPAPISAKVIEKNEKGLVIHGARLLATQGGLTDEVLVVSLPKMYFESDEAF AFSIPSNTKGVKFICRESFVLGKSSFDYPLSSRYEEMDSIVVFDNVLVPWERVFYYDN YDAAFDFNMKSSFNAFAFHQVITRQIVKTEFLLGLAQTIVDTIDVSEYQHIHAKMAEI ITGLETMKALLEKSENDAETDEWGYMRPSVIPLRIVSAIFPDIYPRFTEIIQLIGASG MVTLPTEKAFHSDIRGDLDQYLQAAELNAEDRVKVFRLAWDLTMSPFGTRQTQYERYF FGDPVRLTSHLYSTYPKEEQAAVIKEFLHIHK" misc_feature complement(234275..235708) /gene="yoaI" /locus_tag="BAMF_0207" /note="Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG2368" /db_xref="CDD:32515" misc_feature complement(234272..234880) /gene="yoaI" /locus_tag="BAMF_0207" /note="4-hydroxyphenylacetate 3-hydroxylase C terminal; Region: HpaB; pfam03241" /db_xref="CDD:146061" gene complement(235859..236131) /gene="ybfF" /locus_tag="BAMF_0208" /db_xref="GeneID:9781143" CDS complement(235859..236131) /gene="ybfF" /locus_tag="BAMF_0208" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918804.1" /db_xref="GI:308172099" /db_xref="GeneID:9781143" /translation="MKWIFIGSIIAMFLTALFSGQVSYVHVPRLFPYLLLFLFARGLM YLTKLLKLYKKGPLHSIPHFTKNAENTRITGMIDFVLEQRYKDMIS" gene 236327..236827 /gene="RBAM_002670" /locus_tag="BAMF_0209" /db_xref="GeneID:9780488" CDS 236327..236827 /gene="RBAM_002670" /locus_tag="BAMF_0209" /function="Predicted transcriptional regulators" /note="Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918805.1" /db_xref="GI:308172100" /db_xref="GeneID:9780488" /translation="MAILINMEVEMDQDYMTELVSVQLKKIRSERGYTQEKMADVIGL SKKALVQIEKGRALAEWPHVVAVCALFRSSETLQSVLGDDPLEVIEAVAHRTIDRPKG KTMGGRVWWKAIEKKGEFRLQQHLISHHYRILDSYDDLWFSSFEKADALERLDELFLE AEEAKR" misc_feature 236396..>236542 /gene="RBAM_002670" /locus_tag="BAMF_0209" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene 236900..237967 /gene="RBAM_002680" /locus_tag="BAMF_0210" /db_xref="GeneID:9779692" CDS 236900..237967 /gene="RBAM_002680" /locus_tag="BAMF_0210" /EC_number="1.1.-.-" /function="Glycerol dehydrogenase and related enzymes" /note="3-dehydroquinate synthase;, Alcohol dehydrogenase, iron-type, Iron-containing alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="glycerol dehydrogenase" /protein_id="YP_003918806.1" /db_xref="GI:308172101" /db_xref="GeneID:9779692" /translation="MKPEDIVRSGPNQYICKEGIAKELPGLSEVFRKPVIVTGIKSYQ AFADYSGGSSWDVIQHKGYCSPEAVRKVCEQAKGADVIIGIGGGTILDLAKAAADRLD IEAVMVPSIAGTCAASTPLSVMYDESGNFIRVDYHKRSSYLTLVDPLFLLSSPIEYMK SGIGDTLAKWYEAEAVIRNTEAPPLMAQAGLRQAEYIRDLLLRYSEAAVESMEKGRLS LPFIHTAETIIMLAGTVGGYGGRLCRMAGAHAVHNGLSFLQETHQVLHGQKVAYGILV QLALENRSHEIEELLPFYRRLGFPVSLFDLGIRDSREEAKRRIASHACRAEESLCLMG QYGEKDVSAAIESLESAQKTG" misc_feature 236930..237943 /gene="RBAM_002680" /locus_tag="BAMF_0210" /note="Glycerol_dehydrogenase-like; Region: GlyDH-like; cd08550" /db_xref="CDD:173960" misc_feature 236930..237877 /gene="RBAM_002680" /locus_tag="BAMF_0210" /note="Iron-containing alcohol dehydrogenase; Region: Fe-ADH; pfam00465" /db_xref="CDD:189559" misc_feature order(237014..237016,237158..237166,237173..237175, 237182..237184,237227..237232,237236..237238, 237293..237298,237347..237349,237371..237373, 237392..237394,237404..237406,237644..237646, 237656..237658,237695..237697) /gene="RBAM_002680" /locus_tag="BAMF_0210" /note="active site" /db_xref="CDD:173960" misc_feature order(237014..237016,237158..237166,237227..237232, 237236..237238,237242..237244,237347..237349, 237695..237697) /gene="RBAM_002680" /locus_tag="BAMF_0210" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:173960" misc_feature order(237392..237394,237404..237406,237644..237646, 237695..237697) /gene="RBAM_002680" /locus_tag="BAMF_0210" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173960" gene 238050..239204 /gene="purT" /locus_tag="BAMF_0211" /db_xref="GeneID:9779693" CDS 238050..239204 /gene="purT" /locus_tag="BAMF_0211" /EC_number="2.1.2.-" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase 2" /protein_id="YP_003918807.1" /db_xref="GI:308172102" /db_xref="GeneID:9779693" /translation="MYQAKKILLLGSGELGKEVVIEAQRLGVVTVAVDSYEHAPAMQA AHKSYVIDMLDKAQVREVIEKEKPDLIVPEVEAIATDELLKLEEEGFHVIPNARAAKL TMDREGIRRLAAETLHLPTAGYEFANTYEECKEAAETIGFPCVVKPLMSSSGKGQSVC RSASELKSCWDMAMEGGRVKNGRVIVEEFIPFESEITLLTVHAANGTSFCAPIGHEQK DGDYMESWQPHHMTEQQVEEAKHIAKSITDELGGYGLFGVELFLTQDKVYFSEVSPRP HDTGLVTLVTQNLSEFALHVRAILGFPIPEITQLSPGASRPLKASKELADYAVEGLEK ALAVKSTQVRVFGKPVTKNGRRMAVALSAAETVEEARERAAEALSHLSVT" misc_feature 238056..239135 /gene="purT" /locus_tag="BAMF_0211" /note="phosphoribosylglycinamide formyltransferase 2; Validated; Region: purT; PRK09288" /db_xref="CDD:181759" misc_feature 238062..>238268 /gene="purT" /locus_tag="BAMF_0211" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature 238389..238910 /gene="purT" /locus_tag="BAMF_0211" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene 239683..240216 /gene="pssA" /locus_tag="BAMF_0212" /db_xref="GeneID:9779596" CDS 239683..240216 /gene="pssA" /locus_tag="BAMF_0212" /EC_number="2.7.8.8" /function="16.13: Shape16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="phosphatidylserine synthase" /protein_id="YP_003918808.1" /db_xref="GI:308172103" /db_xref="GeneID:9779596" /translation="MNYIPSMITIGNFICGLLSIHSLLYHNIHSAVIFIFTGMFLDFF DGLAARKLNAVSEMGRELDSFADLVTFGVAPSMLAYTVSLYTLPFIGILIALSYSICG MIRLSRFNIEQSKLPTFIGMPIPFAGMCLVILSFINNAFLLGAGTIALGYLMVSNIKF PHFKKQAPENLESRRWN" misc_feature 239707..240165 /gene="pssA" /locus_tag="BAMF_0212" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene 240207..240695 /gene="ybfM" /locus_tag="BAMF_0213" /db_xref="GeneID:9779563" CDS 240207..240695 /gene="ybfM" /locus_tag="BAMF_0213" /function="16.8: Protect16.6: Maintain" /codon_start=1 /transl_table=11 /product="membrane phosphatase" /protein_id="YP_003918809.1" /db_xref="GI:308172104" /db_xref="GeneID:9779563" /translation="MELVQQLISDYGYIAIFLMLTLGIIGLPIPDEVMMTLVGYFTHL KVLNYELSILISFIGALLGMIISYFIGRKAGRPFINKFGKWVGLKEKRMEKVDRWMKK YGPYTIILGYFIPGIRHVTCYFSGIGRMDFKTYLCFAAIGAFLWCFIFITIGKFIGVI NV" misc_feature 240291..240674 /gene="ybfM" /locus_tag="BAMF_0213" /note="SNARE associated Golgi protein; Region: SNARE_assoc; cl00429" /db_xref="CDD:193815" gene 240688..241503 /gene="psd" /locus_tag="BAMF_0214" /db_xref="GeneID:9780490" CDS 240688..241503 /gene="psd" /locus_tag="BAMF_0214" /EC_number="4.1.1.65" /function="16.13: Shape16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="phosphatidylserine decarboxylase" /protein_id="YP_003918810.1" /db_xref="GI:308172105" /db_xref="GeneID:9780490" /translation="MFNTAAKVLYRSLIELTNNRLTSYLIKNFCESKLSKPMIPLFSK HYRINWNETERTASDFDSLASFFIRDINLNLRPVAKEKNAIVSPVDGVVQTVGMINPN QTFMVKGKDYSFAELTGFKSADHKYNGGYFAVLYLSPRHYHRFHSPVSCTYQKLAELG KRSYPVNTMGLKYGKDVLSKNYRYVYELTRADQQMLMIPVGAMNINSIVQTSTGNKLE TGEELGYFSFGSTVILVFEKDMFTPSDNLTEGRELQVGQIIGYAESQEEASAL" misc_feature 240700..241476 /gene="psd" /locus_tag="BAMF_0214" /note="Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656" /db_xref="CDD:194662" gene 241545..241820 /gene="ybfN" /locus_tag="BAMF_0215" /db_xref="GeneID:9779561" CDS 241545..241820 /gene="ybfN" /locus_tag="BAMF_0215" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918811.1" /db_xref="GI:308172106" /db_xref="GeneID:9779561" /translation="MAEKDLAKLIEQYQHTGGQQVLEAVRDACWPVVEALISELAEDS ADVLREKGRDRFPFIIGKYQTAAGLPLETFLRNTYRFYFQQVLKGEA" gene 241926..242894 /gene="ybfQ" /locus_tag="BAMF_0216" /db_xref="GeneID:9780491" CDS 241926..242894 /gene="ybfQ" /locus_tag="BAMF_0216" /function="16.8: Protect16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918812.1" /db_xref="GI:308172107" /db_xref="GeneID:9780491" /translation="MEKQYRVLLYYKYVKIDEPEEFTAQHLKFCKELGLLGRILISEE GINGTVSGTVEQTDQYMKALKADPRFADMPIKIDEADGHAFRKIFVRHKKELVTLRLE DDVDPNVTTGKHLKPKEFYEKMQDPDTIVIDARNDYEYDLGHFRGAVRPDIEAFRELP SWIEEHKDMLEGKKILTYCTGGVRCEKFSGWLLKQGFEDVSQLDGGIVTYGKDPEVQG QLWDGQCYVFDERISVPVNRVEHVIIGKDYFTGEPCERYVNCANPACNKKMICTPENE YKYMRSCSHECRTNERNMYVKEHEMTQEEINERLALIEKEDHAAID" misc_feature 241929..242867 /gene="ybfQ" /locus_tag="BAMF_0216" /note="putative rhodanese-related sulfurtransferase; Provisional; Region: PRK00142" /db_xref="CDD:178897" misc_feature 242259..242561 /gene="ybfQ" /locus_tag="BAMF_0216" /note="Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins; Region: RHOD_YceA; cd01518" /db_xref="CDD:29081" misc_feature 242460..242462 /gene="ybfQ" /locus_tag="BAMF_0216" /note="active site residue [active]" /db_xref="CDD:29081" misc_feature 242781..242864 /gene="ybfQ" /locus_tag="BAMF_0216" /note="Protein of unknown function (DUF3650); Region: DUF3650; pfam12368" /db_xref="CDD:152803" gene complement(242931..244184) /gene="gltP" /locus_tag="BAMF_0217" /db_xref="GeneID:9780492" CDS complement(242931..244184) /gene="gltP" /locus_tag="BAMF_0217" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="proton/glutamate symport protein" /protein_id="YP_003918813.1" /db_xref="GI:308172108" /db_xref="GeneID:9780492" /translation="MKKFIAFQILIALAIGALIGHFFPDFGMALRPVGDGFIRLIKMI VVPIVFSTIVIGAAGSGSMKKMGSLGIKTIIWFEVITTLVLGLGLLLANVLKPGVGLN LSHLAKKDIHELSGYTEKVVDLKQMLLDIIPVNIIDVMAKNDLLAVIFFAILFGVAAA GIGKASAPVMNFFESTANIMFKLTQMVMVTAPIGVLALMAASVGQYGIALLLPMLKLI GTVFLGLFLILFVLFPIVGLIFKIKYFEVLKMIWDLFLIAFSTTSTETILPQLMDRME KYGCPKRVVSFVVPSGLSLNCDGSSLYLSVSCVFLAQAFHVEMPLSQQLLMMLVLVMT SKGIAAVPSGSLVVLLATANAVGLPAEGVAIIAGVDRVMDMARTGVNVPGHAVACIVV SKWEKAFNYKGPAAASDQSARTESM" misc_feature complement(242979..244097) /gene="gltP" /locus_tag="BAMF_0217" /note="Sodium:dicarboxylate symporter family; Region: SDF; cl00573" /db_xref="CDD:193876" gene 244533..245603 /gene="ybgE" /locus_tag="BAMF_0218" /db_xref="GeneID:9778930" CDS 244533..245603 /gene="ybgE" /locus_tag="BAMF_0218" /EC_number="2.6.1.42" /function="Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase" /note="Branched-chain-amino-acid aminotransferase;, Branched-chain amino acid aminotransferase II, Aminotransferase class IV, ilvE_II: branched-chain amino acid aminotransferase" /codon_start=1 /transl_table=11 /product="branched-chain amino acid aminotransferase" /protein_id="YP_003918814.1" /db_xref="GI:308172109" /db_xref="GeneID:9778930" /translation="MLNQLIEIRKVTARKEKPDSASLGFGKYFTDYMFVMDYEEERGW HDPRITPYEPVHLDPSASVFHYGQAVFEGLKAYRSEEGRVLMFRPDQNVKRLNKSLRR MSMPPLDEKLALEALIQLVVLEQEWIPKEKGTSLYIRPFVIATEPSLGVRPSNRYKFM VVLTPVGSYYGDQLKPIRIYVEDEYVRAVTGGVGDVKTSGNYAASLQAQQKAEELGYD QVLWLDGVEKKYVEEVGSMNIFFIINGEAVTPALNGSILGGITRASVIELLKSWGIPV REEHVAIDDIYQAAMRGEVSAVFGTGTAAVISPVGALHIHGETIELNNGLIGEVSERL YETITGIQVGKVRDSFRWVVEV" misc_feature 244539..245600 /gene="ybgE" /locus_tag="BAMF_0218" /note="branched-chain amino acid aminotransferase; Provisional; Region: PRK13357" /db_xref="CDD:183996" misc_feature 244698..245564 /gene="ybgE" /locus_tag="BAMF_0218" /note="BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-...; Region: BCAT_beta_family; cd01557" /db_xref="CDD:29568" misc_feature order(244698..244712,244719..244733,244737..244739, 244743..244745,244836..244838,244947..244949, 244953..244955,244971..244979,244989..244991, 245010..245012,245127..245129,245142..245144, 245148..245150,245160..245162,245202..245204) /gene="ybgE" /locus_tag="BAMF_0218" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29568" misc_feature order(244728..244730,244743..244745,244815..244817, 244983..244985,245121..245123,245136..245138, 245229..245231,245310..245315,245439..245441) /gene="ybgE" /locus_tag="BAMF_0218" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:29568" misc_feature 245121..245123 /gene="ybgE" /locus_tag="BAMF_0218" /note="catalytic residue [active]" /db_xref="CDD:29568" gene complement(245644..247092) /gene="ybgF" /locus_tag="BAMF_0219" /db_xref="GeneID:9780494" CDS complement(245644..247092) /gene="ybgF" /locus_tag="BAMF_0219" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="aminoacid permease" /protein_id="YP_003918815.1" /db_xref="GI:308172110" /db_xref="GeneID:9780494" /translation="MRFFIRTALAESWKTMNNKNETNFQRSMKSRHLFMLSLGGVIGT GLFLSSGYTIHQAGPAGTIFAYLLGACIVYLVMLCLGELSVAMPVTGAFHTYAKTYIG PATGFTVAWLYWLTWAVALGSEFTAAGLFMQRWFPHTSVWMWSAVFALFIFLLNVFSV KFFAESEFWFSSIKVLAILLFILLGGAAMFGIVPMKSGEAAPMLSNFTVGGSLFPNGF FPILMTMLSVNFAFSGTELIGIAAGESADPEKTVPRAIKTTVWRLALFFIGTIFVLSG MISIQEAGVIESPFVTVFDRVGVPYAADLMNFVILTALLSAANSGLYASSRMLWSLSK EGELHPAFARLTPKGIPFNALIFSMIGGILSLLSSVFAADTIYLVLVSVSGFAVVAVW MSIAASQFLFRRRFLKEGHQVSELKYRTPGYPAVPIAAFLLCLASCIGIAFDPNQAIA LYCGIAFMAVCYIAYYVRNRKSTARVQSAKSQ" misc_feature complement(245653..247023) /gene="ybgF" /locus_tag="BAMF_0219" /note="Transmembrane amino acid transporter protein; Region: Aa_trans; cl00524" /db_xref="CDD:193853" misc_feature complement(245665..246999) /gene="ybgF" /locus_tag="BAMF_0219" /note="Amino acid permease; Region: AA_permease; pfam00324" /db_xref="CDD:144058" gene complement(247161..248111) /gene="ybgG" /locus_tag="BAMF_0220" /db_xref="GeneID:9780495" CDS complement(247161..248111) /gene="ybgG" /locus_tag="BAMF_0220" /EC_number="2.1.1.10" /function="Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)" /note="Homocysteine S-methyltransferase 2; S-methylmethionine:homocysteine methyltransferase 2; SMM:Hcy S-methyltransferase 2; ZmHMT-2;, Homocysteine S-methyltransferase, Homocysteine S-methyltransferase" /codon_start=1 /transl_table=11 /product="homocysteine S-methyltransferase" /protein_id="YP_003918816.1" /db_xref="GI:308172111" /db_xref="GeneID:9780495" /translation="MNPITQILDEYPVMIIDGAMATELERMGCDLNDDLWSAKILLER PELIKQVHAEYFAAGADCAITASYQSTIEGFAARGIPETDAIRLIQTSVELAVQARDE FWAHEENRIHRPKPLIAASIGPYGASLADGSEYRGHYGLTEDELISFHRPRMKALIES GADLLACETIPCLSEAKAITKLLEEFPGTYAWISFSAKDGRHISEGTPISECAALLDS CSQIAAIGINCTPIEHIPTLIEEIKRAASKPIIAYPNSGEQYDPVTKTWIGAACENNF GKSAQSSWYEKGVSLIGGCCRTKPADIQAIADWAKTLKTT" misc_feature complement(247176..248111) /gene="ybgG" /locus_tag="BAMF_0220" /note="Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]; Region: MHT1; cl14105" /db_xref="CDD:187229" misc_feature complement(247176..248075) /gene="ybgG" /locus_tag="BAMF_0220" /note="Homocysteine S-methyltransferase; Region: S-methyl_trans; pfam02574" /db_xref="CDD:111469" gene complement(248228..249664) /gene="glnT" /locus_tag="BAMF_0221" /db_xref="GeneID:9780496" CDS complement(248228..249664) /gene="glnT" /locus_tag="BAMF_0221" /function="Na+/alanine symporter" /note="sodium/glutamine symporter glnT;, Sodium:alanine symporter, Sodium:alanine symporter family, agcS: amino acid carrier protein" /codon_start=1 /transl_table=11 /product="glutamine transporter proton symport" /protein_id="YP_003918817.1" /db_xref="GI:308172112" /db_xref="GeneID:9780496" /translation="MQEFLENVIGSANDFLWSKLLIVLLLSLGLFFTFRSKGLQVRML REMIRVLKEGAAARSKNSISPFQAFCISMAARVGTGNITGIAIAIALGSPGAIFWMWI IAVIGSASSFVESTLAQIYKVKDQNGFRGGPAYYMEKGLKKRWMGALFAVLITLSFGI VFNSVQSNTISIAFQNAFGTSRLTLGLILIAVFACVIFGGVKRIAKMAEYVVVVLAVL YIGIAFFVILTNITQLPSVLSIIKKNAFGIDQAAGGALGAALMQGVRRGIFSNEAGMG SAPNAAATATTSHPVKQGLIQAFGVLTDTLVICTSTALIILFSDAYHQPGLSGIALSQ AALSDHVGAWASGFLAVLMLLFGFSALMGNYYYGETNIGFLSQNKKWLFIYRICVLGM VLFGCISKVQLVWDMADLFMGLMVVVNLIAIFLLSKKAFAALSDYVRQKKAGKDPVFY RDVLPDDDGIECWEYSDIAKNTKGKHIS" misc_feature complement(248327..249556) /gene="glnT" /locus_tag="BAMF_0221" /note="Sodium:alanine symporter family; Region: Na_Ala_symp; cl00548" /db_xref="CDD:163871" misc_feature complement(249689..250494) /note="potential frameshift: common BLAST hit: gi|154684749|ref|YP_001419910.1| glutaminase" gene complement(249689..250210) /gene="glsA" /locus_tag="BAMF_0222" /db_xref="GeneID:9778917" CDS complement(249689..250210) /gene="glsA" /locus_tag="BAMF_0222" /EC_number="3.5.1.2" /function="Glutaminase" /note="Glutaminase;, Glutaminase, core, Glutaminase" /codon_start=1 /transl_table=11 /product="glutaminase, low affinity for glutamine" /protein_id="YP_003918818.1" /db_xref="GI:308172113" /db_xref="GeneID:9778917" /translation="MIGKRPHIHEEVFRSEWQTAHRNRALAYYLKETNFLEADVEETL EVYLKQCAMEGTTEDIALIGLILAHDGYHPIRREQVIPKDVAKLAKALMLTCGMYNAS GKYAAFVGVPAKSGVSGGIMALVPPSARREQPFHNGCGIGIYGPAIDEYGNSLTGGML LKHIAQEWELSIF" misc_feature complement(249692..>250210) /gene="glsA" /locus_tag="BAMF_0222" /note="Glutaminase; Region: Glutaminase; cl00907" /db_xref="CDD:193972" gene complement(250237..250494) /gene="ybgJ1" /locus_tag="BAMF_0223" /pseudo /db_xref="GeneID:9778925" misc_feature complement(250237..250494) /gene="ybgJ1" /locus_tag="BAMF_0223" /note="similar to glutaminase fragment; Glutaminase 1;, Glutaminase" /pseudo gene complement(250509..250763) /gene="ybgJ2" /locus_tag="BAMF_0224" /pseudo /db_xref="GeneID:9780497" misc_feature complement(250509..250763) /gene="ybgJ2" /locus_tag="BAMF_0224" /note="similar to glutaminase fragment; Glutaminase" /pseudo gene 250907..252199 /gene="glnK1" /locus_tag="BAMF_0225" /db_xref="GeneID:9780498" CDS 250907..252199 /gene="glnK1" /locus_tag="BAMF_0225" /EC_number="2.7.3.-" /function="Signal transduction histidine kinase" /note="Sensor histidine kinase glnK;, ATP-binding region, ATPase-like, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /codon_start=1 /transl_table=11 /product="two-component sensor kinase" /protein_id="YP_003918821.1" /db_xref="GI:308172116" /db_xref="GeneID:9780498" /translation="MIRLEYLLKKDGYLFALMLITVPLAGELKFYPVNEVYRISFGAP AFFFFLLLLRHVPAVLSGLLTGAAVVAFRIGLACWGGEHAGFTEAFFSQYPSFFFYFT YACLFYVLKVRHFRDRPLMIGFLGFLIEIASDTVEMAVQFSGGQPIMIPDKLADIAVI AVSHTFIVLSFFNVMKLHEAQVREKQTRKQHEHMLMIVSNLYEETIHLKKTLKTTEHV TKESYQLYREMSGNDRELGSRMLRLAGEIHEVKKDNQRIFAGLSKLISNERFRDYMDA AALIGLVIRINEKYAESLGKDIQFQSVIEGEHPDYHVFTVLSILNNLTANAVEAMGDR GEIRLTLRRAEDDTAEFQAEDDGPGIPEKIGEIVYDPGFTSKYDEFGTPSTGIGLSYV KEIVTELDGDISFHNKPKGVIFTIQLPVRHLIAERGSS" misc_feature 251231..252187 /gene="glnK1" /locus_tag="BAMF_0225" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature 251858..252160 /gene="glnK1" /locus_tag="BAMF_0225" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(251870..251872,251882..251884,251891..251893, 251963..251965,251969..251971,251975..251977, 251981..251986,252062..252073,252119..252121, 252125..252127,252137..252142,252146..252148) /gene="glnK1" /locus_tag="BAMF_0225" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 251882..251884 /gene="glnK1" /locus_tag="BAMF_0225" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(251975..251977,251981..251983,252062..252064, 252068..252070) /gene="glnK1" /locus_tag="BAMF_0225" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 252199..253146 /gene="glnL" /locus_tag="BAMF_0226" /db_xref="GeneID:9778910" CDS 252199..253146 /gene="glnL" /locus_tag="BAMF_0226" /EC_number="3.1.1.61" /function="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /note="[YcbA]; RBL01508, Chemotaxis response regulator protein-glutamate methylesterase;, YcbB domain, YcbB domain" /codon_start=1 /transl_table=11 /product="two-component response regulator" /protein_id="YP_003918822.1" /db_xref="GI:308172117" /db_xref="GeneID:9778910" /translation="MRFFIADDDRAIRSILRQIIEDEDLGEVVGEAEDGSQIEGHYLH FKQVDILLIDLLMPGRDGIETIRHLQNSYTGKTVMISQVEAKEMVGEAYSLGIEYFIH KPINKIEIITVLRKVKDLIELETSIGDIQNSLRRLVQRNEPQQSRLSEAHEKSVKETG KFLLSELGIVGESGAHDLMAVLHFLFEDEQAQKSVPSLKRVFTNVALRKLGPAASEAD VSRETKASEQRIRRAIIHSLNHFASLGTTDFSNPKFEYYASKFFDFPAVSKRMKEMQA KETIPLSPVKVNMKKFIHVFFLEAKDLREGSKFVSGGSR" misc_feature 252208..252549 /gene="glnL" /locus_tag="BAMF_0226" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature 252208..252543 /gene="glnL" /locus_tag="BAMF_0226" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature order(252217..252222,252358..252360,252382..252384, 252439..252441,252496..252498,252505..252510) /gene="glnL" /locus_tag="BAMF_0226" /note="active site" /db_xref="CDD:29071" misc_feature 252358..252360 /gene="glnL" /locus_tag="BAMF_0226" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(252367..252372,252376..252384) /gene="glnL" /locus_tag="BAMF_0226" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 252505..252513 /gene="glnL" /locus_tag="BAMF_0226" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 252670..253086 /gene="glnL" /locus_tag="BAMF_0226" /note="YcbB domain; Region: YcbB; pfam08664" /db_xref="CDD:149650" gene 253443..254363 /gene="ycbJ" /locus_tag="BAMF_0227" /db_xref="GeneID:9778912" CDS 253443..254363 /gene="ycbJ" /locus_tag="BAMF_0227" /function="16.8: Protect" /codon_start=1 /transl_table=11 /product="phosphotransferase" /protein_id="YP_003918823.1" /db_xref="GI:308172118" /db_xref="GeneID:9778912" /translation="MTKQRDIESVLNIAKENGLQLKYEGADINETGMDFQVVFAEDDS GVTWVLRKPRRPDVIERAAAESNVLAFLRSYAAVSVPDWRIHTPELIAYPKLDGIPAA AIDLDKKQHVWNMEHEPPSDGFVGSLAAALAELHGADPAAASRAGIEIIKPDDVRQRT AESMDHIKKEIGVSEPLWQRWQTWINDSSYWPDFSALIHGDLHPPHILIGQNQRVTGL LDWTEAKVADQAKDFVLYQVILGEKETKRLIKSYQAEGGRVWPKMQEHVTEWQAAYPV ETAKFALQTGQEEHMQMAREMLGLSDSKGY" misc_feature 253473..254300 /gene="ycbJ" /locus_tag="BAMF_0227" /note="Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and...; Region: MPH2'; cd05152" /db_xref="CDD:88615" misc_feature order(253521..253523,253551..253553,253587..253589, 253593..253595,253671..253673,253719..253730, 254043..254045,254055..254060,254064..254066, 254097..254102,254157..254159) /gene="ycbJ" /locus_tag="BAMF_0227" /note="putative active site [active]" /db_xref="CDD:88615" misc_feature order(253521..253523,254043..254045,254157..254159) /gene="ycbJ" /locus_tag="BAMF_0227" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:88615" misc_feature 253536..254240 /gene="ycbJ" /locus_tag="BAMF_0227" /note="Phosphotransferase enzyme family; Region: APH; pfam01636" /db_xref="CDD:190058" misc_feature order(253551..253553,253587..253589,253593..253595, 253671..253673,253719..253730,254043..254045, 254055..254060,254064..254066,254097..254102) /gene="ycbJ" /locus_tag="BAMF_0227" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88615" gene 254752..254916 /gene="rtpA" /locus_tag="BAMF_0228" /db_xref="GeneID:9780506" CDS 254752..254916 /gene="rtpA" /locus_tag="BAMF_0228" /note="Tryptophan RNA-binding attenuator protein-inhibitory protein; Anti-TRAP protein; AT" /codon_start=1 /transl_table=11 /product="Tryptophan RNA-binding attenuator protein-inhibitory protein anti-TRAP" /protein_id="YP_003918824.1" /db_xref="GI:308172119" /db_xref="GeneID:9780506" /translation="MVIATDDLELTCPHCEGTGAEKEGAPCPKCGAKGVILTAQGNTL LHFIKKHIDQ" misc_feature <254782..>254895 /gene="rtpA" /locus_tag="BAMF_0228" /note="chaperone protein DnaJ; Region: DnaJ_bact; TIGR02349" /db_xref="CDD:188212" gene 254913..255104 /gene="RBAM_002850" /locus_tag="BAMF_0229" /pseudo /db_xref="GeneID:9780045" misc_feature 254913..255104 /gene="RBAM_002850" /locus_tag="BAMF_0229" /note="similar to ISBma2, transposase fragment" /pseudo gene complement(255323..256216) /gene="ydfM" /locus_tag="BAMF_0230" /db_xref="GeneID:9779694" CDS complement(255323..256216) /gene="ydfM" /locus_tag="BAMF_0230" /function="Predicted Co/Zn/Cd cation transporters" /note="Cation-efflux pump fieF;, Cation efflux protein, Cation efflux family, CDF: cation diffusion facilitator family transporter" /codon_start=1 /transl_table=11 /product="cation efflux system" /protein_id="YP_003918826.1" /db_xref="GI:308172121" /db_xref="GeneID:9779694" /translation="MASEREQISKKVALIALIANLILMAGKIFFGLIGDSEAVFADGI HSAADVVASIAVLAVIGISNKPPDQDHPFGHGKAEVISEAIVGIILVLVSVYILIEAI SSFVEGPSIPQYSALFAALISYVAKQILYRYSIKQGEKWNSKAVIAIAYDHKGDIVAS LAAFIGVLLAIIGNTRGWSYLLYADAIASVIVAYLIFKISMELIRPSVDVLMEKSVDP ELIEEYKAVILHCPQVKRLDKIRAREHGHYKLLDVRLSLDHDLTIKQGHDIAREIRNE IKRHFSDVEEVLIHVNPYFEE" misc_feature complement(255326..256216) /gene="ydfM" /locus_tag="BAMF_0230" /note="Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053" /db_xref="CDD:30402" misc_feature complement(255335..256141) /gene="ydfM" /locus_tag="BAMF_0230" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" gene 256723..257253 /gene="mhqN" /locus_tag="BAMF_0231" /db_xref="GeneID:9780623" CDS 256723..257253 /gene="mhqN" /locus_tag="BAMF_0231" /EC_number="1.-.-.-" /function="Nitroreductase" /note="NADH dehydrogenase/NAD(P)H nitroreductase rutE; Pyrimidine utilization protein E;, Nitroreductase-like, Nitroreductase family" /codon_start=1 /transl_table=11 /product="nitroreductase family protein" /protein_id="YP_003918827.1" /db_xref="GI:308172122" /db_xref="GeneID:9780623" /translation="MFELVALAPSAFNLQHTKYVTVLDPDVKEKLKQAANGQYKVFSS SAVLLVLGDKQAYQKAADIYEGLKMLGILNKQEYDHMVQDTVSFYENRGEPFKRDEAI RNASLSAMMFMLSAKEKGWDTCPMIGFDTEAVKQILNIDDQFEIVMMITIGKEKTESR RPRGYRKPVNEFVEYI" misc_feature 256723..257238 /gene="mhqN" /locus_tag="BAMF_0231" /note="Nitroreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and...; Region: Nitroreductase_1; cd02137" /db_xref="CDD:73305" misc_feature order(256738..256746,256759..256761,256765..256767, 256777..256785,256789..256803,257038..257043, 257050..257055,257062..257067,257074..257076, 257134..257139,257215..257223,257227..257238) /gene="mhqN" /locus_tag="BAMF_0231" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73305" misc_feature order(256747..256755,256759..256761,256840..256842, 257041..257043,257092..257106) /gene="mhqN" /locus_tag="BAMF_0231" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73305" gene 257278..258216 /gene="mhqO" /locus_tag="BAMF_0232" /db_xref="GeneID:9779234" CDS 257278..258216 /gene="mhqO" /locus_tag="BAMF_0232" /EC_number="4.4.1.5" /function="Lactoylglutathione lyase and related lyases" /note="ring-cleaving dioxygenase mhqO;, Glyoxalase/bleomycin resistance protein/dioxygenase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily" /codon_start=1 /transl_table=11 /product="glyoxylase family protein" /protein_id="YP_003918828.1" /db_xref="GI:308172123" /db_xref="GeneID:9779234" /translation="MAKKTMGIHHITAIVGHPQENADFYAGVLGLRLVKQTVNFDDPG TYHLYFGDEGGKPGTIITFFPWVDARQGIIGDGQVGVTSYVVPRGAMSFWEKRLEKFN VPYTKIERFGEQYIEFDDPHGLHLEIAEREAGGTNTWTFGDVTPDVAIKGFGGATLLS AQPEKTGELLENIMGLERVGKEGDFVRYRSAGDIGNVIDLKITPIGRGQMGVGTVHHI AWRAQDDEDQLEWQRFIAAHGYGVTPVQDRNYFNAVYFREHGEILFEIATDPPGFAHD ESQETMGGKLMLSEQYEPHRAHIEQGLLPFEVRELD" misc_feature 257296..257664 /gene="mhqO" /locus_tag="BAMF_0232" /note="N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins; Region: PcpA_N_like; cd08346" /db_xref="CDD:176694" misc_feature order(257305..257307,257311..257313) /gene="mhqO" /locus_tag="BAMF_0232" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:176694" misc_feature 257731..258195 /gene="mhqO" /locus_tag="BAMF_0232" /note="C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins; Region: PcpA_C_like; cd08347" /db_xref="CDD:176695" misc_feature order(257926..257928,258070..258072) /gene="mhqO" /locus_tag="BAMF_0232" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:176695" gene 258348..258737 /gene="mhqP" /locus_tag="BAMF_0233" /db_xref="GeneID:9779235" CDS 258348..258737 /gene="mhqP" /locus_tag="BAMF_0233" /function="Predicted membrane protein" /note="Uncharacterized protein yfiD;, DoxX, DoxX" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918829.1" /db_xref="GI:308172124" /db_xref="GeneID:9779235" /translation="MEDAGLLLIRIMIGVVFLFYGSQKLFGWFGGYGIKGTGQWFESI GVKPGNAAAALSGLGELASGILFILGVFLPLGAAIITIIMLGAIVKVHGAKGFANGAG GFEYNLVLIVVSIGVALIGSGAYAVHF" misc_feature 258360..258623 /gene="mhqP" /locus_tag="BAMF_0233" /note="DoxX; Region: DoxX; cl00976" /db_xref="CDD:154119" gene 258923..259261 /gene="ydfQ" /locus_tag="BAMF_0234" /db_xref="GeneID:9779236" CDS 258923..259261 /gene="ydfQ" /locus_tag="BAMF_0234" /note="'cell envelope and cellular processes; Membrane bioenergetics (electron transport chain and ATP synthase)'" /codon_start=1 /transl_table=11 /product="thioredoxin like protein YdfQ" /protein_id="YP_003918830.1" /db_xref="GI:308172125" /db_xref="GeneID:9779236" /translation="MKELTDLHSLDSIENFIKQHQFSFIYISRPACTVCHAVLPQLRK VLDQFLKIKLGHINADEVEEVAGRFSVFTVPVLLLFIDGTEFLREARFVHFEQLEERL KRVYQLYQDV" misc_feature 258953..259231 /gene="ydfQ" /locus_tag="BAMF_0234" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature order(259016..259018,259025..259027) /gene="ydfQ" /locus_tag="BAMF_0234" /note="catalytic residues [active]" /db_xref="CDD:48496" gene complement(260007..260390) /gene="ycbP" /locus_tag="BAMF_0235" /db_xref="GeneID:9780624" CDS complement(260007..260390) /gene="ycbP" /locus_tag="BAMF_0235" /note="'unknown; unknown proteins from B. subtilis'" /codon_start=1 /transl_table=11 /product="YcbP" /protein_id="YP_003918831.1" /db_xref="GI:308172126" /db_xref="GeneID:9780624" /translation="MEHIKALAIKGIMTIIILYLILGLGFRFTFGDVLLMTIVLGAVS YFTGDLYVLPRWNNITAASADFGIAFLVVWLMGMPLSMGISGGRLAFAALISAIIIAV GEYFFHIYLMRKDLGGSRFLEPRSE" misc_feature complement(260040..260390) /gene="ycbP" /locus_tag="BAMF_0235" /note="Protein of unknown function (DUF2512); Region: DUF2512; pfam10710" /db_xref="CDD:151203" gene 260544..260972 /gene="cwlJ" /locus_tag="BAMF_0236" /db_xref="GeneID:9780507" CDS 260544..260972 /gene="cwlJ" /locus_tag="BAMF_0236" /note="'cell envelope and cellular processes; Cell wall'" /codon_start=1 /transl_table=11 /product="CwlJ" /protein_id="YP_003918832.1" /db_xref="GI:308172127" /db_xref="GeneID:9780507" /translation="MAVVKASSADVDLMARLLRAEAEGEGKQGMLLVGNVGINRVRAN CSDFKGLRTIRQMVFQPHAFEAVTHGYFYQRPRESERRLARRTINGERFWPAKFSLWY FKPPGDCPPTWYNQPFVGRFKSHCFYQPTGETCENVYNTF" misc_feature 260610..260930 /gene="cwlJ" /locus_tag="BAMF_0236" /note="Cell Wall Hydrolase; Region: Hydrolase_2; pfam07486" /db_xref="CDD:191754" gene 261236..262987 /gene="phoD" /locus_tag="BAMF_0237" /db_xref="GeneID:9778611" CDS 261236..262987 /gene="phoD" /locus_tag="BAMF_0237" /EC_number="3.1.4.1" /note="'intermediary metabolism; Metabolism of phosphate'" /codon_start=1 /transl_table=11 /product="PhoD" /protein_id="YP_003918833.1" /db_xref="GI:308172128" /db_xref="GeneID:9778611" /translation="MTHDGRLDEWIKELENKSFQNNTFDRRAFIQGAGKIAGLSLGLA IAQSIGAFEVNAAPKFSNYPFTLGVASGDPLSDSVILWTRLAPDPLNGGGMPKQAVPV NWEIATDEHFRHIVKRGTEMAKPNLGHSVHVEADGLKPNKVYYYRFKSGHELSPVGRT KTLPAPGADVSAMTFAFASCQQYEHGYYTAYKHMAKEKLDLVFHLGDYIYEYGPNEYV SKTGNVRTHSSAEVYTLADYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANV IPEKGQSVEAFVLRRAAAYQAYYEHMPLRRMSLPNGPDMRLYRQFSYGNLASFNVLDT RQYRDDQANGDGNKPPSDEWRDPKRTLMGTEQEQWLFENLAASKAKWNVLAQQIFFAQ WNFGTTANPIFSMDSWDGYPAQRERVINFIKSKNLNNVIVLTGDVHASWASNLHTDFN QTNSKIFGAEFVGTSITSGGNGADKRADTDQILKQNLHIKFFNDYRGYVRCTVTPAQW RADYRVVPYVTEPGAEVSTRASFIYQKDQTGIRKVSQNAVAGGLKQSNEVEEDRFFAH NNAHEKQMRKKRAKISQ" misc_feature 261434..262771 /gene="phoD" /locus_tag="BAMF_0237" /note="PhoD-like phosphatase; Region: PhoD; pfam09423" /db_xref="CDD:192289" misc_feature 261755..>262252 /gene="phoD" /locus_tag="BAMF_0237" /note="Bacillus subtilis PhoD and related proteins, metallophosphatase domain; Region: MPP_PhoD; cd07389" /db_xref="CDD:163632" misc_feature order(261773..261775,261779..261781,261854..261856, 262031..262036,262238..262240) /gene="phoD" /locus_tag="BAMF_0237" /note="putative active site [active]" /db_xref="CDD:163632" misc_feature order(261773..261775,261779..261781,261854..261856, 262031..262033,262238..262240) /gene="phoD" /locus_tag="BAMF_0237" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163632" gene 263000..263197 /gene="tatAD" /locus_tag="BAMF_0238" /db_xref="GeneID:9779509" CDS 263000..263197 /gene="tatAD" /locus_tag="BAMF_0238" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="twin-arginine pre-protein translocation pathway protein" /protein_id="YP_003918834.1" /db_xref="GI:308172129" /db_xref="GeneID:9779509" /translation="MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSAA KTLVSNEEPDKQTAEKDKTAG" misc_feature 263000..263179 /gene="tatAD" /locus_tag="BAMF_0238" /note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788" /db_xref="CDD:189129" gene 263261..263986 /gene="tatCD" /locus_tag="BAMF_0239" /db_xref="GeneID:9780256" CDS 263261..263986 /gene="tatCD" /locus_tag="BAMF_0239" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="twin-arginine pre-protein translocation pathway protein" /protein_id="YP_003918835.1" /db_xref="GI:308172130" /db_xref="GeneID:9780256" /translation="MDKKETHLIGHLEEIRQRLIKTVIAFLVFFIGACWFVQDIYDWL IKDLPGRLAVLGPSEILWVYMMIAGICAITATIPVAAFQLWRFTAPALTAFERRAALL YIPGLSVLFIIGISFGYFVLFPIVLGFLTQLSAGHFDMVFTADKYFTFMLNLTLPFGF LFEMPLAVMFLTRLGIVNPTRLAKARKLSYFLLIVVSVLITPPDFMSDFLVMIPLLVL YEISVTLSRIVYRKKWAETPSAA" misc_feature 263261..263983 /gene="tatCD" /locus_tag="BAMF_0239" /note="Sec-independent protein translocase protein (TatC); Region: TatC; cl00521" /db_xref="CDD:193851" gene complement(263983..264630) /gene="pcp" /locus_tag="BAMF_0240" /db_xref="GeneID:9780258" CDS complement(263983..264630) /gene="pcp" /locus_tag="BAMF_0240" /EC_number="3.4.19.3" /function="16.11: Scavenge (Catabolism)16.6: Maintain" /codon_start=1 /transl_table=11 /product="pyrrolidone-carboxylate peptidase" /protein_id="YP_003918836.1" /db_xref="GI:308172131" /db_xref="GeneID:9780258" /translation="MEKKVLLTGFDPFGGETVNPSWEAVKRLNGAAEGPASIVSEQVP TVFYKSLAVLREAIKKHQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVG EDISQGGPAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHP HIRGGFIHIPYIPEQTLQKSAPSLSLDHITKALKIAAVTAAVHEDDIETGGGELH" misc_feature complement(264043..264624) /gene="pcp" /locus_tag="BAMF_0240" /note="Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from...; Region: Peptidase_C15; cd00501" /db_xref="CDD:29606" misc_feature complement(order(264199..264207,264496..264498, 264592..264594,264601..264603)) /gene="pcp" /locus_tag="BAMF_0240" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29606" misc_feature complement(order(264076..264078,264082..264087, 264103..264105,264109..264114,264229..264243, 264250..264252,264400..264408)) /gene="pcp" /locus_tag="BAMF_0240" /note="AC domain interface; other site" /db_xref="CDD:29606" misc_feature complement(order(264127..264129,264199..264201, 264388..264390)) /gene="pcp" /locus_tag="BAMF_0240" /note="catalytic triad [active]" /db_xref="CDD:29606" misc_feature complement(order(264208..264210,264217..264222, 264271..264273,264289..264300,264325..264330, 264358..264360,264364..264366,264370..264372, 264382..264387)) /gene="pcp" /locus_tag="BAMF_0240" /note="AB domain interface; other site" /db_xref="CDD:29606" misc_feature complement(264076..264078) /gene="pcp" /locus_tag="BAMF_0240" /note="interchain disulfide; other site" /db_xref="CDD:29606" gene 264703..265830 /gene="ycbU" /locus_tag="BAMF_0241" /db_xref="GeneID:9779463" CDS 264703..265830 /gene="ycbU" /locus_tag="BAMF_0241" /EC_number="2.8.1.7" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="cysteine desulfurase" /protein_id="YP_003918837.1" /db_xref="GI:308172132" /db_xref="GeneID:9779463" /translation="MNSPLLQYRSVFPVLQTHTMLASCSQSALARPVSKAITDYQESL LQYGGNWEEAIGRMEQARCEFAKLIGAQPEEIAVLPSVTAAASAVVSALPDCRKKQAV YTELDFPAIAHILKAQTGMELSVIPSEEGMIPLERYETYITEQTLFTCVPHVSFTSGF VQDIKRIAEISAKKGSLLFVDAYQSAGHVPIDVNEWGVDMLAAGARKYMLGIPGTAFL YVRKELAEQLNPKVTGWFGQQRASMLDLTHFSYADGAKRFETGTPAFISIYAAQAALS LLNDIGTDYIHQEVKKLSAFGYEYASEKGLRLAGPTSADDRPGMISIWDEKAAETASF LKRKNIVGALSGQIIRLAPHFYNTADDLIYAIDELAKARGI" misc_feature 264703..265821 /gene="ycbU" /locus_tag="BAMF_0241" /note="Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520" /db_xref="CDD:30866" misc_feature 264793..265818 /gene="ycbU" /locus_tag="BAMF_0241" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(264946..264951,264958..264960,265159..265161, 265243..265245,265252..265254,265312..265314, 265321..265323) /gene="ycbU" /locus_tag="BAMF_0241" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 265321..265323 /gene="ycbU" /locus_tag="BAMF_0241" /note="catalytic residue [active]" /db_xref="CDD:99742" gene complement(265865..267298) /gene="lmrB" /locus_tag="BAMF_0242" /db_xref="GeneID:9780508" CDS complement(265865..267298) /gene="lmrB" /locus_tag="BAMF_0242" /function="16.1: Circulate16.8: Protect" /codon_start=1 /transl_table=11 /product="efflux transporter; drug-export protein" /protein_id="YP_003918838.1" /db_xref="GI:308172133" /db_xref="GeneID:9780508" /translation="MEKAQPSKQYKVMPIMISLLTAGFIGMFSETALNIALTDLMKEL HITPATVQWLTTGYLLVLGILVPVSGLLLQWFTTRQLFIVSLAFSIVGTLIAALAPSF PFLLAARIVQALGTGLLLPLMFNTILVIFPPHKRGAAMGTIGLVIMFAPATGPTFSGL VLEHLNWHWIFWISLPFLVLALLFGIAYMQNVSDITKPKIDVLSIILSTIGFGGIVFG FSNAGEGSGGWSSPTVIGSLTVGAIALILFSIRQLTMKQPMMNLRAFRYPMFILGVVI VFICMMVILSTMLLLPMYLQSGLMLTAFTSGLILLPGGILNGFMSPVTGRLFDKYGPR WLVIPGFVITAAVLWFFSNITGASTALLIVVLHTCLMIGISMIMMPAQTNGLNQLPPE FYPDGTAIMNTLQQMAGAIGTAVAVSIMAAGQKDYMSTVKNPNDPSVYSHALIAGVQH AFIFAMIVAVIGLISAFFMKRVKVNHS" misc_feature complement(<266387..267253) /gene="lmrB" /locus_tag="BAMF_0242" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(266060..267244) /gene="lmrB" /locus_tag="BAMF_0242" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature complement(order(266387..266389,266396..266398, 266552..266554,266564..266566,266573..266575, 266585..266587,266597..266599,266639..266641, 266648..266653,266660..266665,266672..266674, 266846..266848,266864..266869,266876..266881, 266915..266917,266924..266929,266936..266941, 266948..266953,267089..267094,267098..267103, 267113..267115,267122..267127,267134..267136, 267185..267190,267194..267202,267209..267211)) /gene="lmrB" /locus_tag="BAMF_0242" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(267341..267727) /gene="lmrA" /locus_tag="BAMF_0243" /db_xref="GeneID:9779143" CDS complement(267341..267727) /gene="lmrA" /locus_tag="BAMF_0243" /function="Transcriptional regulator" /codon_start=1 /transl_table=11 /product="HTH-type transcriptional regulator lmrA" /protein_id="YP_003918839.1" /db_xref="GI:308172134" /db_xref="GeneID:9779143" /translation="MSHYIRMKIKESLDAYPDPAESIQAFLQDLSRQFTCPENFEGFP VGLLAAETALRSEKLQQACQCAYQEWENLFAGKLRSAGFSDEKAAEISTVLNAMIEGG IILSLAKKDKMPIIHISKQIPSLLRT" misc_feature 268392..268848 /note="potential frameshift: common BLAST hit: gi|154684770|ref|YP_001419931.1| Lip" gene 268392..268550 /gene="lip1" /locus_tag="BAMF_0244" /pseudo /db_xref="GeneID:9779142" misc_feature 268392..268550 /gene="lip1" /locus_tag="BAMF_0244" /note="potential frameshift: common BLAST hit: gi|154684770|ref|YP_001419931.1| Lip; similar to lipase fragment" /pseudo gene 268552..268848 /gene="lip2" /locus_tag="BAMF_0245" /pseudo /db_xref="GeneID:9779136" misc_feature 268552..268848 /gene="lip2" /locus_tag="BAMF_0245" /note="similar to lipase fragment" /pseudo gene 268854..268991 /gene="lip3" /locus_tag="BAMF_0246" /pseudo /db_xref="GeneID:9779137" misc_feature 268854..268991 /gene="lip3" /locus_tag="BAMF_0246" /note="similar to lipase fragment" /pseudo gene 269128..270198 /gene="yccF" /locus_tag="BAMF_0247" /db_xref="GeneID:9779138" CDS 269128..270198 /gene="yccF" /locus_tag="BAMF_0247" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918843.1" /db_xref="GI:308172138" /db_xref="GeneID:9779138" /translation="MGKVKRNAPCPCGSGKKYKKCCGSKAADIPADIAAKEAKQIQES LMEYAFTAHRDGISSFINQHEFITELDRQTKDIGVFNLGIWGIFFRPLAGGKTIFEEY LQKKAGGINRPKTREIVESWKSMTPAVMVLEDVKEGMIHFEDVMTKKQFKVEMDVSQQ DLPPAGSLILGYPIHEAEKAEFFMQFTIFPVKRTEALISKVKKAAAPALAEGKSPERF MQENFDTVLAALLGTAEEPKPAAEETQAEWANDMEKETADAIEKGLSGDEYPAELVPA VIDLWKTFCVKKTPTIRKPEAFAAAVEYYVNSISLNGASVSQAKLAKKYGVSASTISS RYKEIEGAMQDEADRFAAALTS" misc_feature 269245..269775 /gene="yccF" /locus_tag="BAMF_0247" /note="Predicted metal-binding protein related to the C-terminal domain of SecA [General function prediction only]; Region: COG3318" /db_xref="CDD:33127" misc_feature 270010..270159 /gene="yccF" /locus_tag="BAMF_0247" /note="helix-turn-helix, Psq domain; Region: HTH_psq; pfam05225" /db_xref="CDD:147429" gene 270335..271267 /gene="yccK" /locus_tag="BAMF_0248" /db_xref="GeneID:9780509" CDS 270335..271267 /gene="yccK" /locus_tag="BAMF_0248" /function="Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)" /note="Uncharacterized oxidoreductase yccK;, Aldo/keto reductase, Aldo/keto reductase family, Kv_beta: voltage-dependent potassium channel beta subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918844.1" /db_xref="GI:308172139" /db_xref="GeneID:9780509" /translation="MDETRALGRTDLRVKRIGFGANAVGGHNLFPNLNDETGKELIRT ALDGGVNFIDTAFIYGLGRSEELIGEVVAERGVRDSLVIASKGAHKEVNGQIELDNSR EFLRSEAEKSLKRLKTDVIDLYYVHFPDGKTPLAEVAGTLKELKDEGKIRAIGASNLS FRQLQEFNADGYLEVFQSEYSLIQREAEKDLLPYCEKNGISFIPYFPLASGLLTGKFT KDTVFEDSRKNRPPFQGEAFQQNLERVDKLKAVAEEKGVPAAHIALAWLLSQPAVDAI IPGAKRPDQLKHNLGALDVQLTEDEVQYISDIFK" misc_feature 270341..271264 /gene="yccK" /locus_tag="BAMF_0248" /note="Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]; Region: Tas; COG0667" /db_xref="CDD:31011" misc_feature 270344..271258 /gene="yccK" /locus_tag="BAMF_0248" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature order(270392..270400,270494..270496,270509..270511, 270590..270592,270713..270718,270803..270808, 270863..270865,270947..270964,271112..271114, 271163..271174,271187..271189,271196..271201) /gene="yccK" /locus_tag="BAMF_0248" /note="active site" /db_xref="CDD:119408" misc_feature order(270494..270496,270509..270511,270590..270592, 270713..270715) /gene="yccK" /locus_tag="BAMF_0248" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene complement(271310..272305) /gene="ycdA" /locus_tag="BAMF_0249" /db_xref="GeneID:9780510" CDS complement(271310..272305) /gene="ycdA" /locus_tag="BAMF_0249" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_003918845.1" /db_xref="GI:308172140" /db_xref="GeneID:9780510" /translation="MSIKKMSAVFFILLLTAFTAACSSETSGGKESGTAKVKIKDTAW VTSDDAEHPTALKVTVTVKNTGNDPLTVKSSDFSLYQNDAKTAAADKEDRMQSGTLHA DKTVTGSLYFTADEGKSYELVYQPQAKDAKPLSYKLKVKGTAPKAKPDPADALSAYID VMLYGRHNKDFTRLTGVNEKMTAAAYQESAKASFIASAGISKEQADSKAISAIIDAMS SALRDHTELKVQTKSMSDGKAVLEAKVTPLDMSPLAGRLQDRVQDYAGKHPDADENEI VSHLLSVYPEEFMRLKPASSSVTKEIEMKKNARGQWYLDTDADLEGLTEAFLKTS" misc_feature complement(271928..>272140) /gene="ycdA" /locus_tag="BAMF_0249" /note="Telomeric repeat-binding factor 2; Region: TRF2; pfam11611" /db_xref="CDD:152047" gene 272420..273811 /gene="ycdB" /locus_tag="BAMF_0250" /db_xref="GeneID:9780511" CDS 272420..273811 /gene="ycdB" /locus_tag="BAMF_0250" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918846.1" /db_xref="GI:308172141" /db_xref="GeneID:9780511" /translation="MMKKEELKQLALRIGNVPPGYESNVEEYQEDEVLFWWEDKNDPE AGIMVELEPDGKLKYLSRPAFRTDLAPLLETDIEERMRAFLETHRPGALAEFELEKKS SVNDGDVRYSYVQMAYGLPLPLTGFYVDLAVTGEVTGFSYQGKADDLLRPGTIADKRE ASAHFVKQIEAELLFTVLHQSVYVQGDDKPHLVYEIVSPTRPISADLKEENEEIEEYE ELEHNTRPYVSISRPEPEAEKMSINDMIGLHDGFYKDRESDLGDGCIGIAWRREKTKS AREDKSFESLFKERNEHVLKTRYDKESGRLTGVMSFIQEEGEPVFSEEECHHMAIRFL FAMFPEADQYFRVQYDEGENAGLTYKACSGGVDLRFGEGRICVSKKTGLVTFYMPPEI DPKELENIDPVPSLTMEEAKDAIRRAIKAELAWDRFYDDGSCGKVYRLVYKPVFPRFI EAHTGEAIMSLIG" gene 274012..275370 /gene="ycdC" /locus_tag="BAMF_0251" /db_xref="GeneID:9780512" CDS 274012..275370 /gene="ycdC" /locus_tag="BAMF_0251" /function="16.6: Maintain16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="YP_003918847.1" /db_xref="GI:308172142" /db_xref="GeneID:9780512" /translation="MLKEHLRKKALEIGNIPPHYELEIEDFDEKQKTRAYYIWKDRNH PEKTVTIELGGDGSLLTYSRNDCPGSDLQLSDAELKLTALRFAARHRPLTFMKFTFQA REERNGCIRFIYTKKVLGRPLPDSGFFVDVTESGFIVQFLYYGDKGEAPVPETFVDQE KVISHYMSGLTFSLVYDVVNFEKTPRLVYEPILPAYSYPAGEDDIVPDQPFCEDRNES AKPLPALEHKREVSIDELMGFTADMIQTRRRDLGDEIGTTWRKGAVPERKDLSIESYF ESSNKNTMKMKTDKKTGKMTAFKSFIEHEGPAFYSAEECEEVALQFLYKLYPRADEFF KMNPLKTDGRGRFRYHFSVWHRDIPLRFGAARILVSPVTGLVEAYMAPDIDPEQLEQI NPVPAVTIEEAKSAFLSDFHLQLEWQRDFTPSGNEGYKLVYRPVYPPYIDAHKQKKKR FY" gene complement(275367..275870) /gene="cwlK" /locus_tag="BAMF_0252" /db_xref="GeneID:9780513" CDS complement(275367..275870) /gene="cwlK" /locus_tag="BAMF_0252" /EC_number="3.4.-.-" /function="N-acetylmuramoyl-L-alanine amidase" /note="Peptidoglycan L-alanyl-D-glutamate endopeptidase cwlK; Flags: Precursor;, Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins, D-alanyl-D-alanine carboxypeptidase" /codon_start=1 /transl_table=11 /product="Peptidoglycan L-alanyl-D-glutamate endopeptidase cwlK" /protein_id="YP_003918848.1" /db_xref="GI:308172143" /db_xref="GeneID:9780513" /translation="MRLPVRIALLLILFFCADLCFSYVQKELRPQTALQERDIPNALH PLVKQNAELLQTAALKKGITVVITEGFRSIEEQNELYRQGRSKKGNIVTYAKGGESYH NYGLAIDFALQKKDGSLIWDMTYDGNQNGRPDWLEVVSIAKTLGFDWGGDWRNFKDYP HLQMIPG" misc_feature complement(<275460..275744) /gene="cwlK" /locus_tag="BAMF_0252" /note="D-alanyl-D-alanine carboxypeptidase; Region: VanY; cl00813" /db_xref="CDD:186202" gene 275980..277101 /gene="rapJ" /locus_tag="BAMF_0253" /db_xref="GeneID:9778612" CDS 275980..277101 /gene="rapJ" /locus_tag="BAMF_0253" /EC_number="3.1.-.-" /function="FOG: TPR repeat" /note="Response regulator aspartate phosphatase H; PSP28;, Tetratricopeptide-like helical" /codon_start=1 /transl_table=11 /product="response regulator aspartate phosphatase" /protein_id="YP_003918849.1" /db_xref="GI:308172144" /db_xref="GeneID:9778612" /translation="MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDME ENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFSEMLTEIEMNQQKLTGLLEYYFY YFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHEKALEYLECALEHAERLDDHYM IAAAYYNIGHCMYSLGDFCKAAEDFERAAAGFEAHSFQQVIQAVFSLTHIYFKTERYS DAAASYARGMKSAAEWEDEIYMTKFRLIKELYQGDGGQDSLKEYFDILESKELLADTE ELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA" misc_feature <276562..276831 /gene="rapJ" /locus_tag="BAMF_0253" /note="type IV pilus biogenesis/stability protein PilW; Region: type_IV_pilW; TIGR02521" /db_xref="CDD:131573" gene 277215..277994 /gene="ycdF" /locus_tag="BAMF_0254" /db_xref="GeneID:9779635" CDS 277215..277994 /gene="ycdF" /locus_tag="BAMF_0254" /EC_number="1.1.1.47" /function="Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /note="3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-acyl carrier protein reductase;, NAD(P)-binding domain, short chain dehydrogenase, 3oxo_ACP_reduc: 3-oxoacyl-(acyl-carrier-protein) reductase" /codon_start=1 /transl_table=11 /product="general stress protein" /protein_id="YP_003918850.1" /db_xref="GI:308172145" /db_xref="GeneID:9779635" /translation="MYQDLQGKTAIVTGSSKGIGKAIAERFGKERMNVVVNYLGDSAG ADEAADFIEKAGGRAVTVKADVSSEEGIQALFDAAQEHFGGVDVMVNNSGFNGAEAMP HEMSLEDWQKVIDVNVTGTFLGAKAALNHMLQRGTKGTVLNISSVHQQIPRPENVQYA TSKGGIKMMTETMALNYADKGIRVNAIAPGTIATESNEDLQDETHKQTQLKKIPMNAF GKPEEVAAAAAWMVSEEARYVTGTTLFVDGGMTLYPSQLER" misc_feature 277215..277979 /gene="ycdF" /locus_tag="BAMF_0254" /note="glucose-1-dehydrogenase; Provisional; Region: PRK08936" /db_xref="CDD:181585" misc_feature 277227..277982 /gene="ycdF" /locus_tag="BAMF_0254" /note="glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; Region: GlcDH_SDR_c; cd05358" /db_xref="CDD:187616" misc_feature order(277254..277256,277260..277271,277329..277331, 277404..277415,277488..277496,277560..277562, 277644..277652,277689..277691,277701..277703, 277779..277790,277794..277805) /gene="ycdF" /locus_tag="BAMF_0254" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187616" misc_feature order(277521..277523,277527..277529,277542..277544, 277569..277571,277590..277592,277659..277661, 277671..277673,277692..277697,277707..277709, 277716..277718,277728..277733,277740..277745) /gene="ycdF" /locus_tag="BAMF_0254" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187616" misc_feature order(277563..277565,277650..277652,277689..277691, 277701..277703) /gene="ycdF" /locus_tag="BAMF_0254" /note="active site" /db_xref="CDD:187616" gene 278078..279757 /gene="ycdG" /locus_tag="BAMF_0255" /db_xref="GeneID:9780514" CDS 278078..279757 /gene="ycdG" /locus_tag="BAMF_0255" /EC_number="3.2.1.10" /function="Glycosidases" /note="Glucan 1,6-alpha-glucosidase; Dextran glucosidase; Exo-1,6-alpha-glucosidase; Glucodextranase;, Glycoside hydrolase, subgroup, catalytic core, Alpha amylase, catalytic domain, trehalose_treC: alpha,alpha-phosphotrehalase" /codon_start=1 /transl_table=11 /product="general stress protein" /protein_id="YP_003918851.1" /db_xref="GI:308172146" /db_xref="GeneID:9780514" /translation="MANDWWKDAVVYQIYPRSFQDTNGDGIGDLRGVIARLDYIKELG ADVIWICPIYPSPNVDNGYDVTDHQAIMKSYGTMEDFHDLLTECRSRGLKLVMDFVLN HTSTEHPWFKEAEMNPNSKYRKYYFWRPGTADGPPTDWVSDYGQSVWQYEEHTGEYYL HMNAVKQADLNWENPEMRQSVYEMMRFWLDKGVDGLRIDQLHLLSKKEYLPPYEDYIA RRADPKPFRPNGARIHDYLKEMTKEVFSKYDVMSVGEAGSVTPEEGLVYTGTDEHELN MIFHFQHMELDQKPGQEHWDVKPLELSDLKKVLTDWQKKLEHQGWNTLYWCNHDQPRI VSRFGDEGKYRKASAKMLAALLYFMKGTPYIYQGEELGMTNAPFDRIEDYQDIQTVNM YHKRVFEMGRDREEVMASIMAKSRDHARTPMQWDGSRNAGFTEGEPWLKVNPNYKTIN AAEAENDPDSVLNFYKKLIRLRKQYADVIKGSYTLLLPDDPQLFVYERQANGQKLISI SNVSKEEAAFYWPDGSEPGSAKLLLSNYENAGSADSCITFRPYETRVYLLA" misc_feature 278090..279751 /gene="ycdG" /locus_tag="BAMF_0255" /note="alpha,alpha-phosphotrehalase; Region: trehalose_treC; TIGR02403" /db_xref="CDD:162843" misc_feature 278159..279202 /gene="ycdG" /locus_tag="BAMF_0255" /note="Alpha amylase, catalytic domain; Region: Alpha-amylase; cl07893" /db_xref="CDD:164103" gene complement(279742..280236) /gene="BL01809" /locus_tag="BAMF_0256" /db_xref="GeneID:9780515" CDS complement(279742..280236) /gene="BL01809" /locus_tag="BAMF_0256" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_003918852.1" /db_xref="GI:308172147" /db_xref="GeneID:9780515" /translation="MKKQMITASQVTARSNEETVVFIIGVRINKWPSIHRWLPVVRAM TPMIKELYANKELGFLSMEMSCTLRSITLIQYWRSFDDLMSYAKGEKHMKAWRHFYQR AAASQAVGIYHETYTVPAGSYESIYVNMPAFGLAKAKGSIPVTKETRTAAKRIKTAQD QASR" gene complement(280237..280782) /gene="BL01810" /locus_tag="BAMF_0257" /db_xref="GeneID:9778441" CDS complement(280237..280782) /gene="BL01810" /locus_tag="BAMF_0257" /function="Predicted transcriptional regulators" /note="Uncharacterized protein yqjI;, Winged helix repressor DNA-binding, Transcriptional regulator PadR-like family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918853.1" /db_xref="GI:308172148" /db_xref="GeneID:9778441" /translation="MSKKSDTYYALLGLITIGCHTGYEIKQMMDRSLQHFWTISYSQI YPNLKRLTEEGLLTVTTTVQEDRPDKKEYHLTQKGEDALQDWLNEPVKQPAAEKNELL LKLFFSDKQDTASNIRMIEHYKLQLNMKYELYETIEQSLLKRDGMELRLFTIDYGKRV TAAAIEWADAVISKLQKGDEL" misc_feature complement(280408..280782) /gene="BL01810" /locus_tag="BAMF_0257" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(280252..280500) /gene="BL01810" /locus_tag="BAMF_0257" /note="Virulence activator alpha C-term; Region: Vir_act_alpha_C; pfam10400" /db_xref="CDD:150982" gene 280991..281950 /gene="ycdH" /locus_tag="BAMF_0258" /db_xref="GeneID:9778442" CDS 280991..281950 /gene="ycdH" /locus_tag="BAMF_0258" /function="ABC-type metal ion transport system, periplasmic component/surface adhesin" /note="zinc transport system zinc-binding lipoprotein adcA; Flags: Precursor;, ABC transporter metal-binding lipoprotein, Periplasmic solute binding protein family" /codon_start=1 /transl_table=11 /product="zinc ABC transporter" /protein_id="YP_003918854.1" /db_xref="GI:308172149" /db_xref="GeneID:9778442" /translation="MFKKWSGIIVIAACFLIAAGCGNSSTKGSSGSSKNGKLHVVTTF YPMYEFTKQIVKDKGDVDMLIPSSVEPHDWEPTPKDIAGIQNADLFVYNSEYMETWVP SAEKSMGSDHAKFVKASKGIDLLEGSDEEEEEHDHGGHDHSHSMDPHVWLSPVLAQKE VKTITAQIVKQDPKNKAYYEKNSKEYIAKLQDLDKLYRTTLNKAAKKELITQHAAFSY LAKEYGLKQVAIAGLSPEEEPSPAKLAELKTFAKKHDVKIIYFEEVASPKVADTLAGE IGAKTEVLNTLEGLSQKERDKGIGYIDIMEKNLDALKDSLLVK" misc_feature 281102..281938 /gene="ycdH" /locus_tag="BAMF_0258" /note="Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor...; Region: AdcA; cd01017" /db_xref="CDD:29736" misc_feature 281108..281938 /gene="ycdH" /locus_tag="BAMF_0258" /note="Periplasmic solute binding protein family; Region: SBP_bac_9; pfam01297" /db_xref="CDD:189932" misc_feature order(281204..281206,281435..281437,281627..281629, 281852..281854) /gene="ycdH" /locus_tag="BAMF_0258" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29736" gene 281984..282700 /gene="ycdI" /locus_tag="BAMF_0259" /db_xref="GeneID:9780516" CDS 281984..282700 /gene="ycdI" /locus_tag="BAMF_0259" /EC_number="3.6.3.27" /function="ABC-type sugar transport systems, ATPase components" /note="Phosphate import ATP-binding protein pstB; Phosphate-transporting ATPase; ABC phosphate transporter;, ABC transporter-like, ABC transporter, cbiO: cobalt ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="zinc ABC transporter" /protein_id="YP_003918855.1" /db_xref="GI:308172150" /db_xref="GeneID:9780516" /translation="MRERKISMNLVTLQDIVFGYSHTPVLDGVSLEIKSGEFVGITGP NGASKSTLMKVMLGMLRPWEGTAEISKKNAAGKRLTIGYVPQQISSFNAGFPSTVLEL VQSGRYTKGKWFKRLNETDHHEVENALKMVEMWDFRNRKIGDLSGGQKQKICIARMLA SNPDLLMLDEPTTAVDYESRQGFYEFMHHQVKNHNRTVVMVTHEQNEVQQYLDKVIRL ERGEKGGWKCLTWNSCDELF" misc_feature 282002..282694 /gene="ycdI" /locus_tag="BAMF_0259" /note="ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]; Region: ZnuC; COG1121" /db_xref="CDD:31318" misc_feature 282020..282646 /gene="ycdI" /locus_tag="BAMF_0259" /note="ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-...; Region: ABC_Metallic_Cations; cd03235" /db_xref="CDD:72994" gene 282658..283497 /gene="yceA" /locus_tag="BAMF_0260" /db_xref="GeneID:9780517" CDS 282658..283497 /gene="yceA" /locus_tag="BAMF_0260" /function="ABC-type Mn2+/Zn2+ transport systems, permease components" /note="Chelated iron transport system membrane protein yfeD;, ABC-3, ABC 3 transport family" /codon_start=1 /transl_table=11 /product="zinc ABC transporter permease" /protein_id="YP_003918856.1" /db_xref="GI:308172151" /db_xref="GeneID:9780517" /translation="MEMFDLEFMRRAFLAGSMIGIMAPILGVYLVLRRQALMADTLSH ISLSGVAIGFFLSTNITAASIVVVTIGAIGIEYMRRAYRTYSEVSIAILMAAGLSFAM FLISLSKGGASMSIDQYLFGSLVTVSQQQVYIIGGITLLILLYFIILNRPLYLLTFDE ATAKTSGINTNLLSMSFSIVTGLAISVIIPIIGVLLVSALLVLPAAFAIRIAKGFKWV FTAAIVISLFSVFTGLTSSYQLGTPPGPSITLLLIILLLLGFTLQGIWNAFKKGKERK NRR" misc_feature 282682..283371 /gene="yceA" /locus_tag="BAMF_0260" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature order(282736..282738,282748..282756,283096..283101, 283105..283113,283117..283122,283126..283143, 283147..283155,283279..283281,283300..283302) /gene="yceA" /locus_tag="BAMF_0260" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature order(282751..282753,282757..282759,282772..282774, 282913..282915,282919..282924,282931..282936, 282943..282948,282955..282957,282964..282969, 282973..282975,283006..283011,283018..283020, 283246..283248) /gene="yceA" /locus_tag="BAMF_0260" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(282973..282975,283048..283050,283222..283224, 283234..283236,283369..283371) /gene="yceA" /locus_tag="BAMF_0260" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene complement(283541..284536) /gene="yceB" /locus_tag="BAMF_0261" /db_xref="GeneID:9780518" CDS complement(283541..284536) /gene="yceB" /locus_tag="BAMF_0261" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="monooxygenase" /protein_id="YP_003918857.1" /db_xref="GI:308172152" /db_xref="GeneID:9780518" /translation="MIDLSILDQAPVSKGNGPHETLRHSAELARLSEGWGYKRYWFAE HHGTRGLASVSPEIMMAHTAAATTSIRIGSGGVLLPQYSPYKVAETFRQLEALHPNRI DLGVGRSPGGTTKIRLALTDGVKKSMTEFNRQLQDLSSFLTDSIPADHDYAGIKTAPL IETAPQLWVLGLGENSARRAAQQGAGYVFGHFINPERGEKAFQIYQDHFRASAHFSAP ASLCAIFVICAATDEKAEELALSQDLWLLRVGKGADSRVPSVEEAKAYPYSPEDRKQI EENRKRMVIGSPAAVRRHLLELSDRYQTKEMMVLCNVFDFEAKKESYERLADLFL" misc_feature complement(283544..284485) /gene="yceB" /locus_tag="BAMF_0261" /note="Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]; Region: COG2141" /db_xref="CDD:32324" misc_feature complement(<283922..284479) /gene="yceB" /locus_tag="BAMF_0261" /note="Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892" /db_xref="CDD:189181" gene 284811..285407 /gene="yceC" /locus_tag="BAMF_0262" /db_xref="GeneID:9780519" CDS 284811..285407 /gene="yceC" /locus_tag="BAMF_0262" /function="Uncharacterized proteins involved in stress response, homologs of TerZ and cAMP-binding protein CABP1" /note="Stress response protein SCP2;, Bacterial stress protein, Bacterial stress protein" /codon_start=1 /transl_table=11 /product="tellurium resistance protein" /protein_id="YP_003918858.1" /db_xref="GI:308172153" /db_xref="GeneID:9780519" /translation="MAISLQKGQRIDLTKGKAGLSKLLVGLGWDPVSSGGFFGKLFGG GGANIDCDASVLMLENDKMTDSKNVIYFGNLKSRCGGVVHTGDNLTGEGDGDDEQILI DLAKVPAQINKLVFVVNIYDCVRRKQDFGMIQNAFIRVVDQSNREELVTYNLRDNYSG KTSLIAAEIYRQDGEWKFAAVGEGTNDTKIGDIVNRYA" misc_feature 284814..285401 /gene="yceC" /locus_tag="BAMF_0262" /note="Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]; Region: TerZ; COG2310" /db_xref="CDD:32464" misc_feature 284868..285401 /gene="yceC" /locus_tag="BAMF_0262" /note="Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974" /db_xref="CDD:132992" misc_feature order(284958..284960,284964..284966,285102..285104) /gene="yceC" /locus_tag="BAMF_0262" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:132992" gene 285431..286012 /gene="yceD" /locus_tag="BAMF_0263" /db_xref="GeneID:9780520" CDS 285431..286012 /gene="yceD" /locus_tag="BAMF_0263" /function="Uncharacterized proteins involved in stress response, homologs of TerZ and cAMP-binding protein CABP1" /note="General stress protein 16U; GSP16U;, Bacterial stress protein, Bacterial stress protein" /codon_start=1 /transl_table=11 /product="general stress protein" /protein_id="YP_003918859.1" /db_xref="GI:308172154" /db_xref="GeneID:9780520" /translation="MAISLAKGQKVDLTKTNPGLSKVVVGLGWDTNKYDGGHDFDLDS SVFLLNEAGRCASPDDFIFYNQLEGGNGSVAHSGDNLTGQGEGDDESVRVNLSAVPAA IDKISFVITIHEAEARGQNFGQVSNAFVRIVNEETNEELIRYDLAEDFSIETAIIAGE LYRHNGEWKFSAIGSGYQGGLARIATDYGLQIG" misc_feature 285434..285997 /gene="yceD" /locus_tag="BAMF_0263" /note="Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]; Region: TerZ; COG2310" /db_xref="CDD:32464" misc_feature 285488..285997 /gene="yceD" /locus_tag="BAMF_0263" /note="Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974" /db_xref="CDD:132992" misc_feature order(285551..285553,285557..285559,285698..285700) /gene="yceD" /locus_tag="BAMF_0263" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:132992" gene 286046..286624 /gene="yceE" /locus_tag="BAMF_0264" /db_xref="GeneID:9780521" CDS 286046..286624 /gene="yceE" /locus_tag="BAMF_0264" /function="Uncharacterized proteins involved in stress response, homologs of TerZ and cAMP-binding protein CABP1" /note="Uncharacterized protein yceE;, Bacterial stress protein, Bacterial stress protein" /codon_start=1 /transl_table=11 /product="general stress protein" /protein_id="YP_003918860.1" /db_xref="GI:308172155" /db_xref="GeneID:9780521" /translation="MAIQLSKGQRVDLTKTNPGLTKAVIGLGWDTNKYSGGHDFDLDA SAFLVDAHDNCVNDLDFVFYNNLEHPSGGVIHTGDNRTGEGDGDDEQIIVDFTKIPAN IEKIGITVTIHDAEARGQNFGQVSNAFVRVVDENNQNELLRFDLGEDFSIETAVVVCE LYRHGAEWKFNAIGSGFSGGLASLCRNYGLQV" misc_feature 286049..286612 /gene="yceE" /locus_tag="BAMF_0264" /note="Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]; Region: TerZ; COG2310" /db_xref="CDD:32464" misc_feature 286103..286612 /gene="yceE" /locus_tag="BAMF_0264" /note="Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974" /db_xref="CDD:132992" misc_feature order(286166..286168,286172..286174,286313..286315) /gene="yceE" /locus_tag="BAMF_0264" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:132992" gene 286663..287436 /gene="yceF" /locus_tag="BAMF_0265" /db_xref="GeneID:9780522" CDS 286663..287436 /gene="yceF" /locus_tag="BAMF_0265" /function="16.1: Circulate16.8: Protect" /codon_start=1 /transl_table=11 /product="stress adaptation transporter" /protein_id="YP_003918861.1" /db_xref="GI:308172156" /db_xref="GeneID:9780522" /translation="MDFLHHIMSTYASFFDWKMWGEVLTDPVSWGLIGSLVLLEGLLS ADNALVLAVMVRHLPEKQRKKALTYGLFGAYIFRFIFIGIGMLLIKFWWIKVLGALYL AWLVIKHFWIGEGDDDTEGMKKNSWMVRTFGIFWATVVSVELMDLAFSVDSILAAFAV SEKVWVLLIGGMLGILMMRTVAKVFLVLIDKIPELENTAFVLIGIIAVKMAASAFDYE MPHVVFFGIIIAAFVVTFVIHYFNKQKQVQEQTAASKEE" misc_feature 286792..287325 /gene="yceF" /locus_tag="BAMF_0265" /note="Integral membrane protein TerC family; Region: TerC; cl10468" /db_xref="CDD:189213" gene 287509..289131 /gene="yceG" /locus_tag="BAMF_0266" /db_xref="GeneID:9780523" CDS 287509..289131 /gene="yceG" /locus_tag="BAMF_0266" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918862.1" /db_xref="GI:308172157" /db_xref="GeneID:9780523" /translation="MRQEELVIRKAELENDDWETFLMQPLPERPGYERENGLAFTRLA VRILGTPYDETEYYNTLFELSSHENIHVLSETLDKTIAPETFQALQHIHTVNQKEKGL SVSRFVAFLDGGRLLAKHPDPLMHRRLRTAFMTLLETFASRHENGLNHPDFRRVLLDV SKFSLNHLNPWLEQADIEREMPKVVWYGDAAKSQLYFLYYLMLVGCDVLLFHPAGEDL FSEIDPDEELSFVIKLPAIGGLEPFPKEKPVRTSTAAYRSTKEIEHVLNHEESMMYKP WQFREHTPQSVTLKTTYDELFLIAKERAFIRPQFKADRERVAVPNLFAKVMGVSKDTK EYWNRLHTAADYQETHMIRSFPFTEELKANYQYHYSQVLNEEGTIDAERLKRSNIWQY KHLPSGVQTAIANVISDMCRNPGMKALPGEQARDAAIYLFRQATNLPASLLQLIQTFD YAQTVPKLLLYHTEQNGEFTRSDAAALLFLNKFGVDIILYNPPGHQDIEHYIEESQFD VHWLEDMVFRQEYKEPSLVRKLFRTITQKQGE" gene 289138..290226 /gene="yceH" /locus_tag="BAMF_0267" /db_xref="GeneID:9780524" CDS 289138..290226 /gene="yceH" /locus_tag="BAMF_0267" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918863.1" /db_xref="GI:308172158" /db_xref="GeneID:9780524" /translation="MTENQNPLILDKNEEISEQKADDIRLQLRQDPEVQRISQQIDVK NQMELLEYGKEPAVEISKFSDRILNMMKTTSVTDSGTMLTQLGKIMDRFDKNDFDEPK GFLAKMFKRGNSMIEKIFQKYRTLGGEIDKIHVEISKYKDEMAKTNHTLEEMYENNIN YYMELEKYVVAGQMKLEEMQALIPSYEEKAAGGNQLAQMQLDTLRDGLQALEERVYDL DMARMVALQTAPQIRLLQRGNTKLIGKINSAFVITIPIFKNGIIQAVTVKRQKLVADS MSELDRRTNEMLKRNAENISSQSVEIARMAGRPSIDIETIETSWNTIVSGMQETKQIE EENRRLREDGAKRIQQLQDNIKNAVLKN" misc_feature 289234..290220 /gene="yceH" /locus_tag="BAMF_0267" /note="Toxic anion resistance protein (TelA); Region: TelA; pfam05816" /db_xref="CDD:147781" gene 290341..291543 /gene="yceI" /locus_tag="BAMF_0268" /db_xref="GeneID:9780525" CDS 290341..291543 /gene="yceI" /locus_tag="BAMF_0268" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="YP_003918864.1" /db_xref="GI:308172159" /db_xref="GeneID:9780525" /translation="MNKQPAVTPRKLLAIAGMGWLFDAMDVGILSFIIAALHADWNLT PDQMKWIGSVNSIGMAAGAFVFGMLADRIGRKKVFMITLLFFSVGSGISAFATGLTVF LILRFLIGMGLGGELPVASTLVSEASAPEKRGRIIVLLESFWAAGWLLAAVISYFVIP SFGWRAALLLTALAALYALILRRSLPESPAHQALSQKKSIRGQAGSVWAKPYSRQTVL LSVVWFCVVFSYYGMFLWLPSVMLMKGYSMIESFEYVLLMTLAQLPGYFSAAWLIEKA GRKTLLVIYLLGTAGSAYFFGAADSLGMLLAAGMLLSFFNLGAWGVLYAYTPEQYPAA IRATGSGTAAAVGRIGGIFGPLLVGSLAARNVSFTAVFAVFCAAILIAVITILILGKE TKQTELAQ" misc_feature 290371..291426 /gene="yceI" /locus_tag="BAMF_0268" /note="benzoate transport; Region: 2A0115; TIGR00895" /db_xref="CDD:162095" misc_feature 290377..291468 /gene="yceI" /locus_tag="BAMF_0268" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(290419..290421,290428..290436,290440..290445, 290494..290496,290503..290508,290515..290517, 290527..290532,290536..290541,290677..290682, 290689..290694,290701..290706,290713..290715, 290749..290754,290761..290766,290782..290784, 291019..291021,291028..291033,291040..291045, 291052..291054,291091..291093,291103..291105, 291115..291117,291124..291126,291136..291138, 291277..291279,291286..291291,291298..291300, 291310..291315,291322..291324,291355..291360, 291367..291372,291379..291384,291391..291393) /gene="yceI" /locus_tag="BAMF_0268" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 291926..293182 /gene="opuAA" /locus_tag="BAMF_0269" /db_xref="GeneID:9780526" CDS 291926..293182 /gene="opuAA" /locus_tag="BAMF_0269" /EC_number="3.6.3.32" /function="ABC-type proline/glycine betaine transport system, ATPase component" /note="Glycine betaine transport ATP-binding protein opuAA; Quaternary-amine-transporting ATPase;, Glycine betaine/L-proline transport ATP-binding subunit, ABC transporter, proV: glycine betaine/L-proline transport ATP binding subunit" /codon_start=1 /transl_table=11 /product="glycine betaine ABC transporter ATP-binding protein" /protein_id="YP_003918865.1" /db_xref="GI:308172160" /db_xref="GeneID:9780526" /translation="MNSDEKPIKIKVENVSKVFGKQTKKAIQMLSSGKNKKEILKATG STVGVNQANFDVYDGEIFVIMGLSGSGKSTLVRLLNRLIEPTAGNIYIDGDMITNMSK DQLREVRRKKISMVFQKFALFPHRTILENTEYGLELQGVDKKEREKKALDSLKLVGLE GFEHQFPDQLSGGMQQRVGLARALTNDPDILLMDEAFSALDPLIRKDMQDELLDLHDS VGKTIIFITHDLDEALRIGDRIVLMKDGNIVQIGTPEEILMSPSNEYVEKFVEDVDLS KVLTAGHIMKRAETVRIDKGPRVALQLMKNLGISSIYAVDKQKKLLGVIHAADAKKAV ESDLSLQDILNTEFTTVHESTYLTEIFDVVSDANIPIAVTDDKGRMKGIVVKGALIGA LSGNNDYINVEDSAEQAQDSSVQGVK" misc_feature 291953..292759 /gene="opuAA" /locus_tag="BAMF_0269" /note="This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these...; Region: ABC_Pro_Gly_Bertaine; cd03294" /db_xref="CDD:73053" misc_feature 292046..293116 /gene="opuAA" /locus_tag="BAMF_0269" /note="glycine betaine/L-proline transport ATP binding subunit; Region: proV; TIGR01186" /db_xref="CDD:130254" misc_feature 292121..292144 /gene="opuAA" /locus_tag="BAMF_0269" /note="Walker A/P-loop; other site" /db_xref="CDD:73053" misc_feature order(292130..292135,292139..292147,292277..292279, 292505..292510,292607..292609) /gene="opuAA" /locus_tag="BAMF_0269" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73053" misc_feature 292268..292279 /gene="opuAA" /locus_tag="BAMF_0269" /note="Q-loop/lid; other site" /db_xref="CDD:73053" misc_feature 292433..292462 /gene="opuAA" /locus_tag="BAMF_0269" /note="ABC transporter signature motif; other site" /db_xref="CDD:73053" misc_feature 292493..292510 /gene="opuAA" /locus_tag="BAMF_0269" /note="Walker B; other site" /db_xref="CDD:73053" misc_feature 292517..292528 /gene="opuAA" /locus_tag="BAMF_0269" /note="D-loop; other site" /db_xref="CDD:73053" misc_feature 292595..292615 /gene="opuAA" /locus_tag="BAMF_0269" /note="H-loop/switch region; other site" /db_xref="CDD:73053" misc_feature 292793..293101 /gene="opuAA" /locus_tag="BAMF_0269" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing...; Region: CBS_pair_ABC_OpuCA_assoc2; cd04583" /db_xref="CDD:73083" gene 293183..294031 /gene="opuAB" /locus_tag="BAMF_0270" /db_xref="GeneID:9779402" CDS 293183..294031 /gene="opuAB" /locus_tag="BAMF_0270" /function="ABC-type proline/glycine betaine transport system, permease component" /note="osmoprotectant uptake system permease protein yehW;, Binding-protein-dependent transport systems inner membrane component, Binding-protein-dependent transport system inner membrane component" /codon_start=1 /transl_table=11 /product="glycine betaine ABC transporter permease" /protein_id="YP_003918866.1" /db_xref="GI:308172161" /db_xref="GeneID:9779402" /translation="MDRLPRIPLADIVDRFVDWLTMTFGGFFDGISNGLAAFVNAIVS GLGYIPSILLTVIFAALAWWISTKGIALFTLIGFLVIDYLGYWSPMLQTLALVVTSVL ISIIIGVPIGVWASQKETVRRIVTPILDLMQTMPAFVYLLPAIFFFNIGVVPGVVASV IFAMPPTIRMTVLGIKQVPADLIEATEAFGSTTSQRLFKVQLPLATKTILAGINQSIM LALSMVVIAAMVGAPGLGSEVYSAVTQLKTGVGVEAGIAIVIVAITLDRITQNIKVKK KSRGNA" misc_feature 293510..293890 /gene="opuAB" /locus_tag="BAMF_0270" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(293510..293515,293528..293530,293555..293566, 293570..293599,293606..293611,293615..293617, 293663..293668,293672..293674,293678..293680, 293687..293692,293696..293698,293708..293713, 293720..293722,293771..293773,293813..293818, 293825..293827,293846..293857,293864..293869) /gene="opuAB" /locus_tag="BAMF_0270" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(293573..293617,293846..293863) /gene="opuAB" /locus_tag="BAMF_0270" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(293615..293617,293648..293650,293864..293866) /gene="opuAB" /locus_tag="BAMF_0270" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(293723..293761,293777..293782,293792..293794) /gene="opuAB" /locus_tag="BAMF_0270" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 294031..294912 /gene="opuAC" /locus_tag="BAMF_0271" /db_xref="GeneID:9779403" CDS 294031..294912 /gene="opuAC" /locus_tag="BAMF_0271" /function="ABC-type proline/glycine betaine transport systems, periplasmic components" /note="Glycine betaine-binding protein; Flags: Precursor;, ABC-type glycine betaine transport system, substrate-binding region, Substrate binding domain of ABC-type glycine betaine transport system" /codon_start=1 /transl_table=11 /product="glycine betaine ABC transporter binding protein" /protein_id="YP_003918867.1" /db_xref="GI:308172162" /db_xref="GeneID:9779403" /translation="MLKKIIGVGVTAALALSLAACGSQTDGQATAASQVNKTIIGIDP GSGIMALTDEAVKDYGLKDWNVVTASSAAMTATLKKSYDRKKPIIVTGWTPHWMFSRY KLKFLDDPKKTYGTAEQIHTITRTGFSKEQPNAVKVLSQFKWTQDDMGEVMIAVEEGE KPAKAAADYVKKHKDQVAQWTKGAHKVKGDKINLAYVAWDSEIASTNVVGKVLQDLGY DVKLTQVEAGPMWTAVATGSADASLSAWLPNTHKAYASKYKGKYEDVGTSLTGVKMGL VVPQYMKNVNSIEDLKK" misc_feature <294145..294597 /gene="opuAC" /locus_tag="BAMF_0271" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature 294592..>294909 /gene="opuAC" /locus_tag="BAMF_0271" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(294948..296069) /gene="amhX" /locus_tag="BAMF_0272" /db_xref="GeneID:9779404" CDS complement(294948..296069) /gene="amhX" /locus_tag="BAMF_0272" /EC_number="3.5.1.-" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_003918868.1" /db_xref="GI:308172163" /db_xref="GeneID:9779404" /translation="MNRLTEHDKQVIMDIFNHLHAHPEVSWKEYQTTEYLTEKLKEAG CRTRTFDDCTGVIGEIGEGSLVVAVRADIDALWQEVDGVFQANHSCGHDSHMTMALGT MMLLKRQRKLPKGTIRFIFQPAEEKGGGALKMIEKGVLDDVDFLYGVHVRPVQETANG RCAPSILHGSSRHIEGMIIGEEAHGARPHLGLNSIEIAALLVQKLSFIHLDPGIPHSV KMTKLQAGGESSNIIPGKASFSLDLRAQTNAAMEKLTAETERACEAAAAAFGAKIELQ KEHSLPAAERNKEAEAIMAAAISGILGEEHVDEPLVTTGGEDFHFYGLKVPNLKTTML GLGCGLQPGLHHPHMTFDRSAIFTGVEILTAAVLASFEA" misc_feature complement(294966..296045) /gene="amhX" /locus_tag="BAMF_0272" /note="M20 Peptidase Aminoacylase 1 amhX_like subfamily; Region: M20_Acy1_amhX_like; cd08018" /db_xref="CDD:193565" misc_feature complement(294993..296036) /gene="amhX" /locus_tag="BAMF_0272" /note="amidohydrolase; Region: amidohydrolases; TIGR01891" /db_xref="CDD:162584" misc_feature complement(order(295035..295037,295620..295622, 295692..295694,295794..295796,295800..295802)) /gene="amhX" /locus_tag="BAMF_0272" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193565" misc_feature complement(order(295344..295352,295368..295370, 295374..295379,295392..295412,295452..295454, 295461..295463,295470..295472,295482..295487, 295551..295553)) /gene="amhX" /locus_tag="BAMF_0272" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193565" misc_feature 296203..297637 /note="potential frameshift: common BLAST hit: gi|154684795|ref|YP_001419956.1| YcgA" gene 296203..297444 /gene="ycgA1" /locus_tag="BAMF_0273" /db_xref="GeneID:9778318" CDS 296203..297444 /gene="ycgA1" /locus_tag="BAMF_0273" /function="Predicted membrane protein" /note="Uncharacterized protein HI0594;, C4-dicarboxylate anaerobic carrier-like, C4-dicarboxylate anaerobic carrier" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918869.1" /db_xref="GI:308172164" /db_xref="GeneID:9778318" /translation="MAVPKAEPDLKKKKSFVMPDAYVLLFIVALLCALASYIVPAGEF DRVTKGSVTSAVPGSYHSLEQSPVSPIAFFTAIQEGMTSSAPIIFLILFTGGTIAILE KTGAINGLINNVISTFRTKQLLFIAIVGALFSILGTTGIVVNSVIGFIPIGLIVARSL KWDAVAGAAVIYIGCYAGFNATILSPSPLGLSQSIAELPLFSGIGLRIAVYICFLLSS ILYIYRYTRRLRKSKDASLLGNDWFPAAGSVPQVSEPEDKQVSFTVRHKLILAVAALS LAGFLYGALTLGWSDSEMAAVFIFISILSGLIAGMAANDIAKTFITGSQGLVYGALIV GMARSISVILEHGKLLDTVVNGLASLLHGFSPMAGAIGMYISSALLHFLISSGSGEAV VFIPILAPLADLMGITRQVAD" misc_feature 296224..297438 /gene="ycgA1" /locus_tag="BAMF_0273" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene 297434..297637 /gene="ycgA2" /locus_tag="BAMF_0274" /db_xref="GeneID:9780527" CDS 297434..297637 /gene="ycgA2" /locus_tag="BAMF_0274" /function="Predicted membrane protein" /note="Uncharacterized protein ycgA;, Arginine/ornithine antiporter, ycgA" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918870.1" /db_xref="GI:308172165" /db_xref="GeneID:9780527" /translation="MRIEAVMLGGGVVNCVNPTSGVLMAVLAASGIPYVKWLRFMVPL ALIWFVIGLVFICIGVLIKWGPY" misc_feature <297446..297619 /gene="ycgA2" /locus_tag="BAMF_0274" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene 297797..298201 /gene="ycgB" /locus_tag="BAMF_0275" /db_xref="GeneID:9780528" CDS 297797..298201 /gene="ycgB" /locus_tag="BAMF_0275" /codon_start=1 /transl_table=11 /product="integral inner membrane protein" /protein_id="YP_003918871.1" /db_xref="GI:308172166" /db_xref="GeneID:9780528" /translation="MIWSEVGMLMGTLSLLDIIVRGLVLNCPFREWAGSLAVFFIIIV YYCIRAAASGILLPAIHSEAALKKQIRRQMGETLAVAVIITLITMYDQGIPHHFTGWL KLIALFLVCSIFIFLIRYVAVRLIYRRSRKKS" gene complement(298245..299063) /gene="yczC" /locus_tag="BAMF_0276" /db_xref="GeneID:9780529" CDS complement(298245..299063) /gene="yczC" /locus_tag="BAMF_0276" /codon_start=1 /transl_table=11 /product="integral inner membrane protein" /protein_id="YP_003918872.1" /db_xref="GI:308172167" /db_xref="GeneID:9780529" /translation="MNYANIGERMAAFLVDLLLMYLFILLVPITLYAGRPLSTSFFFI FTGLIVLCYILMPLTPLEGTIGAYIFKLKVVKAHDGSRISFGQAVGRFFVSLLHFLSV LPFITVHFTEKAQAVHDMAAGTAVLRKSPDVQSSEPLPDAGKFYYRIPAVLLDVIIIV SVILYIAKLTDEALWAVLISEFVMIILYPMLMPLTKMKGTIGLFIFRLRVADEKSRGN ISFKQAFIRYFTIFVYCASPLLYFLFLFKNRSQSVHDLAAHTYIAQARSKSANI" misc_feature complement(298695..299057) /gene="yczC" /locus_tag="BAMF_0276" /note="RDD family; Region: RDD; cl00746" /db_xref="CDD:193923" misc_feature complement(298290..>298544) /gene="yczC" /locus_tag="BAMF_0276" /note="RDD family; Region: RDD; cl00746" /db_xref="CDD:193923" gene 299280..300233 /gene="ldh" /locus_tag="BAMF_0277" /db_xref="GeneID:9780571" CDS 299280..300233 /gene="ldh" /locus_tag="BAMF_0277" /EC_number="1.1.1.27" /function="16.10: Respire" /codon_start=1 /transl_table=11 /product="L-lactate dehydrogenase" /protein_id="YP_003918873.1" /db_xref="GI:308172168" /db_xref="GeneID:9780571" /translation="MMNERVNKVALIGAGFVGSSYAFALINQGITDELVIIDVNKEKA MGDVMDLNHGKAFAPHPVKTSYGTYEDCKDSDIVCICAGANQKPGETRLELVEKNLAI FKSIVGEVMASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRYML SEYFGAAPQNVHAHIIGEHGDTELPVWSHANIGGVPVQQLLEKNAAYKQDELDQIVED VKNAAYHIIEKKGATYYGVAMSLARITKAILRNENSILTVSTYLDGQYGVNDVFIGIP AVVNRNGIAGVTELELNETEQAQFSRSANVLKDILAPHFAE" misc_feature 299280..300227 /gene="ldh" /locus_tag="BAMF_0277" /note="L-lactate dehydrogenase; Reviewed; Region: ldh; PRK00066" /db_xref="CDD:178836" misc_feature 299298..300215 /gene="ldh" /locus_tag="BAMF_0277" /note="L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases; Region: HicDH_like; cd05291" /db_xref="CDD:133427" misc_feature order(299298..299300,299373..299375,299460..299462, 299772..299774,299778..299780,299787..299789, 299844..299846,299859..299864,300024..300038, 300042..300044,300120..300122,300144..300149) /gene="ldh" /locus_tag="BAMF_0277" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:133427" misc_feature order(299322..299330,299391..299396,299520..299531, 299643..299651,299718..299720,299814..299816) /gene="ldh" /locus_tag="BAMF_0277" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:133427" misc_feature order(299334..299339,299346..299348,299358..299363, 299418..299420,299424..299438,299445..299450, 299739..299744,299748..299750,299784..299786, 299964..299969,299979..299987,299994..299996, 300006..300008) /gene="ldh" /locus_tag="BAMF_0277" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133427" misc_feature order(299553..299555,299649..299651,299742..299744, 299814..299816,299946..299948,299976..299978) /gene="ldh" /locus_tag="BAMF_0277" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133427" gene complement(300277..301809) /gene="mdr" /locus_tag="BAMF_0278" /db_xref="GeneID:9779111" CDS complement(300277..301809) /gene="mdr" /locus_tag="BAMF_0278" /function="16.1: Circulate16.8: Protect" /codon_start=1 /transl_table=11 /product="multidrug-efflux transporter" /protein_id="YP_003918874.1" /db_xref="GI:308172169" /db_xref="GeneID:9779111" /translation="MEQTAAKDASTKFVVIGLLLGILMSAMDNTIVATAMGNIAADLG SFDKFAWVTASYMVAVMAGMPIYGKLSDMYGRKRFFLFGLILFLIGSALCGIAQTMDQ LIIYRVIQGIGGGALMPIAFTIIFDLFPPEKRGKMSGMFGAVFGLSSVLGPLLGALIT DSISWHWVFYINVPIGILSLFFILRYYKESLEHKKQKIDWAGAITLVVSIVGLMFALE LGGKTYDWNSVQIIGLFAVFAVFFIAFFIVERKAEEPIISFWMFKNRLFATAQILAFL YGATFVILAVFIPIFVQAVYGSTATSAGFILTPMMIGSVIGSMIGGIFQTKVRFRNLM LISVVAFFIGMLLLSNMTPDTARTMLTVFMLISGFGVGFNFSLLPAASMNDLEPRYRG SANSTNSFLRSFGMTLGVTIFGTIQTNVFTNKLTDSFSGMKGAGGAMQNIGNSQEIFQ AGTRAHIPPQILDKIIDAMSQSITYVFTLALVPIVIAAVTVLFMGKARVKTSQEMAKK AN" misc_feature complement(300370..301773) /gene="mdr" /locus_tag="BAMF_0278" /note="drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711" /db_xref="CDD:129794" misc_feature complement(<301246..301767) /gene="mdr" /locus_tag="BAMF_0278" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(301363..301365,301381..301386, 301393..301398,301432..301434,301441..301446, 301453..301458,301465..301470,301606..301611, 301615..301620,301630..301632,301639..301644, 301651..301653,301699..301704,301708..301716, 301723..301725)) /gene="mdr" /locus_tag="BAMF_0278" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature complement(300550..>301035) /gene="mdr" /locus_tag="BAMF_0278" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene 301923..302384 /gene="ycgE" /locus_tag="BAMF_0279" /db_xref="GeneID:9779201" CDS 301923..302384 /gene="ycgE" /locus_tag="BAMF_0279" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_003918875.1" /db_xref="GI:308172170" /db_xref="GeneID:9779201" /translation="MSTRNTRSETEETAIQLFRKMATRTILFHQAAAQSLGLFPTDLK SADILNEAGPMTAGELGKKTGLSTGSVTALIDRLEKAGYVMRKKDPEDKRRVIIVPLT AGKANVKQLFSSLSQSTVSLCRQYKEEELHLIFDFLKKVTDIMEDELEKLK" misc_feature 302001..302363 /gene="ycgE" /locus_tag="BAMF_0279" /note="Transcriptional regulators [Transcription]; Region: MarR; COG1846" /db_xref="CDD:32031" misc_feature 302022..302315 /gene="ycgE" /locus_tag="BAMF_0279" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(302442..303131) /locus_tag="BAMF_0280" /db_xref="GeneID:9780530" CDS complement(302442..303131) /locus_tag="BAMF_0280" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918876.1" /db_xref="GI:308172171" /db_xref="GeneID:9780530" /translation="MTYHKFLALKVDGALAGTKEVFISLRRTFSNGKQLNLKRFILGL YEKTTNNTQQVTFISDNFLDYRRCNLFLANNPKELNKKETKIKLKKLAKKIPVIDKSG TPAPMNNSKIFFTTREISEKIGTDQWNIRKWAKVHNIVPKKNKAGQLLFTKEQFDLFS KLKNTSKRLNSQEQPDTKSHNKQLETYNIFHGLTNKQVVAINQNTGKTDYTFKDINEF NLLRKIFKNID" misc_feature complement(<302481..302786) /locus_tag="BAMF_0280" /note="polar chromosome segregation protein; Reviewed; Region: racA; PRK13182" /db_xref="CDD:183879" misc_feature 303445..304074 /note="potential frameshift: common BLAST hit: gi|154684801|ref|YP_001419962.1| YcgF" gene 303445..303708 /gene="ycgF1" /locus_tag="BAMF_0281" /pseudo /db_xref="GeneID:9777901" misc_feature 303445..303708 /gene="ycgF1" /locus_tag="BAMF_0281" /note="similar to amino acid efflux protein ycgF fragment; amino acid efflux protein ycgF;, Lysine exporter protein (LYSE/YGGA)" /pseudo gene 303727..304074 /gene="ycgF2" /locus_tag="BAMF_0282" /pseudo /db_xref="GeneID:9780531" misc_feature 303727..304074 /gene="ycgF2" /locus_tag="BAMF_0282" /note="similar to amino acid efflux protein ycgF fragment; amino acid efflux protein ycgF;, Lysine exporter protein (LYSE/YGGA)" /pseudo gene 304142..304903 /gene="ycgG" /locus_tag="BAMF_0283" /db_xref="GeneID:9780532" CDS 304142..304903 /gene="ycgG" /locus_tag="BAMF_0283" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918879.1" /db_xref="GI:308172174" /db_xref="GeneID:9780532" /translation="MASVLYTKSCLEENLLNLPNWQRIAFELLSEKVGDEADTFPCIP GRQGFLTDQLRISFAGDPRDRETPEEVGLLLSEYGKISRDTGRYASLLVIFDTPEDLA EHCSIEEYEELFWSFLKRLSGCDPKDWPEDMPEDPEHYKWEFCFDGEPYFILCATPAH EARQSRSFPFFMLAFQPRWVFEGLNDSTVFGRNMSRLIRKRLEAYDEAPLHPRLGWYG GKDNLEWKQYFLRDDETQVSKCPFSYLKRLFKPTK" misc_feature 304208..304876 /gene="ycgG" /locus_tag="BAMF_0283" /note="YqcI/YcgG family; Region: YqcI_YcgG; cl01349" /db_xref="CDD:154347" gene complement(304887..306233) /gene="ycgH" /locus_tag="BAMF_0284" /db_xref="GeneID:9780533" CDS complement(304887..306233) /gene="ycgH" /locus_tag="BAMF_0284" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="amino acid transporter" /protein_id="YP_003918880.1" /db_xref="GI:308172175" /db_xref="GeneID:9780533" /translation="MGKSQDQPKGNLAWWQLSLIGVGCTIGTGFFLGSSIAIVKSGYS ALISFLIAGLGTYFVFEQLAKLSAKQPEKGSFCAYARKAFGSWAGFSNGWVYWSSEML ITGSQLTAISLFTKHWFPNVPLWIFASIYAVLGLLIIFTGLSVFQKTEHVLAVVKTAA IFMFIVIAVLALCGIFSHKPDVQVPNDTKDLFPHGAMGLWTGLIYAFYAFGGIEVLGL MTVHLKKPEEASKSGRLMLIVLAVIYVISLGLALLLIPLAKFTEQDSPFISSLKGFHL DVILDIFNGIFIIAGFSTLVASLFAVTTLLCTMADDGDAPKCFRLKENKKICWPALGL TFAGLIVSIILSLVLPKNIYEHMTTAAGLMLLYTWLFILFSSKKLTEPTKMGTTQIFI ALLLIIAAVSGTLFEKSSRPGFLVSLCFLAIIAIVTWIVQKKQGHSPAGSLLISSV" misc_feature complement(304911..306233) /gene="ycgH" /locus_tag="BAMF_0284" /note="Transmembrane amino acid transporter protein; Region: Aa_trans; cl00524" /db_xref="CDD:193853" gene 306357..306953 /gene="ycgI" /locus_tag="BAMF_0285" /db_xref="GeneID:9780534" CDS 306357..306953 /gene="ycgI" /locus_tag="BAMF_0285" /function="16.8: Protect" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_003918881.1" /db_xref="GI:308172176" /db_xref="GeneID:9780534" /translation="MTQQFIVPPKKGLGLKVHKGQIIKVVDVEGQQVADFTAYHAKDF YEHLDQGATIDANQSINVKTGDHIYSNLYKPMLTLIEDTVGKHDLLLPACRPDMNRLL YGKHKDELQDTCYDNMSGALEQFGVPRPHMHYPFAIFMNTVLDEKGNLSVETPLSDAG DYVRLRAEMDLVVAFSSCPIEKGKCNGDSITALRVEIS" misc_feature 306366..306872 /gene="ycgI" /locus_tag="BAMF_0285" /note="Domain of unknown function (DUF1989); Region: DUF1989; cl01474" /db_xref="CDD:194143" gene 307085..307903 /gene="nadE" /locus_tag="BAMF_0286" /db_xref="GeneID:9780535" CDS 307085..307903 /gene="nadE" /locus_tag="BAMF_0286" /EC_number="6.3.5.1" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="ammonium-dependent NAD+ synthetase" /protein_id="YP_003918882.1" /db_xref="GI:308172177" /db_xref="GeneID:9780535" /translation="MSIQKQIMNDLHVKPSIDPKQEIEDRVNFLKQYLKKIGAKGFVL GISGGQDSTLAGRLAQMAAESIREEGGNAEFIAVRLPHGTQQDEDDAQMALKFIKPDK SWTYDIKPAVSAFADQYKKETGDQLSDFNKGNVKARMRMIAQYAVGGQEGLLVIGTDH AAEAVTGFFTKYGDGGADLLPLTGLTKRQGRRLLEELGAPERLYLKLPTADLLDDKPQ QTDETELGITYNDIDDYLEGKDVSSEVIEALEKRYLSSEHKRQVPASMFDDWWK" misc_feature 307127..307900 /gene="nadE" /locus_tag="BAMF_0286" /note="NAD+ synthetase; Region: nadE; TIGR00552" /db_xref="CDD:161924" misc_feature 307133..307864 /gene="nadE" /locus_tag="BAMF_0286" /note="NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to...; Region: NAD_synthase; cd00553" /db_xref="CDD:30166" misc_feature order(307157..307162,307169..307171,307178..307183, 307394..307396,307397..307399,307406..307411, 307418..307423,307475..307477,307487..307489, 307496..307501,307505..307513,307517..307525, 307529..307534,307595..307600,307607..307624, 307631..307636,307856..307858,307862..307864) /gene="nadE" /locus_tag="BAMF_0286" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:30166" misc_feature order(307214..307225,307238..307240,307316..307324, 307472..307474,307484..307486,307493..307498, 307502..307504,307556..307558,307571..307573, 307586..307597,307604..307606,307709..307714, 307718..307720,307754..307756,307856..307861) /gene="nadE" /locus_tag="BAMF_0286" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:30166" misc_feature order(307217..307225,307235..307240,307319..307324, 307502..307504,307556..307558,307643..307645, 307706..307711) /gene="nadE" /locus_tag="BAMF_0286" /note="ATP binding pocket [chemical binding]; other site" /db_xref="CDD:30166" misc_feature order(307223..307225,307235..307237,307571..307573, 307709..307711) /gene="nadE" /locus_tag="BAMF_0286" /note="Mg binding site [ion binding]; other site" /db_xref="CDD:30166" misc_feature order(307346..307348,307697..307720,307736..307759) /gene="nadE" /locus_tag="BAMF_0286" /note="active-site loop [active]" /db_xref="CDD:30166" gene complement(307937..308728) /gene="RBAM_003390" /locus_tag="BAMF_0287" /db_xref="GeneID:9779323" CDS complement(307937..308728) /gene="RBAM_003390" /locus_tag="BAMF_0287" /function="L-xylulose-5-phosphate 3-epimerase" /note="Protein frlC;, Xylose isomerase-like, TIM barrel domain, Xylose isomerase-like TIM barrel" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918883.1" /db_xref="GI:308172178" /db_xref="GeneID:9779323" /translation="MKLSFCTTGSKKKHILDVISFAKEHSFDGIELWYGHIKQYIKEI GPLDRLDQQLQEEGIEVPAVSLYTDFVSQDERQALKDVQRALSAARQLHSPLIRVFAG NLASHRTSPEKWERAVDQFQEAARLADSYEVDIGLEIHYDTYADTPEAALAFLEDVGH PRVRIIFDGSNLHVNHIDQMTALEKLYHTVSHIHLKNYHWNFDNWYLSKPVPVLQGDL QQEPLLNELMNRQYGGFVSLEYFGRHAEVHIKESLNEMKHCFHKK" misc_feature complement(308075..308674) /gene="RBAM_003390" /locus_tag="BAMF_0287" /note="Xylose isomerase-like TIM barrel; Region: AP_endonuc_2; pfam01261" /db_xref="CDD:189913" gene 308941..309528 /gene="ycbE1" /locus_tag="BAMF_0288" /pseudo /db_xref="GeneID:9779695" misc_feature 308941..309528 /gene="ycbE1" /locus_tag="BAMF_0288" /note="similar to galactarate/glucarate transporter in (proton symport); Vesicular glutamate transporter 3; VGluT3; Solute carrier family 17 member 8;, Major facilitator superfamily MFS-1" /pseudo gene 309530..310252 /gene="ycbE2" /locus_tag="BAMF_0289" /pseudo /db_xref="GeneID:9780503" misc_feature 309530..310252 /gene="ycbE2" /locus_tag="BAMF_0289" /note="similar to galactarate/glucarate transporter in (proton symport) fragment; glucarate transporter; D-glucarate permease;, Major facilitator superfamily MFS-1" /pseudo gene 310376..310936 /gene="aroK" /locus_tag="BAMF_0290" /db_xref="GeneID:9780504" CDS 310376..310936 /gene="aroK" /locus_tag="BAMF_0290" /EC_number="2.7.1.71" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="shikimate kinase" /protein_id="YP_003918886.1" /db_xref="GI:308172181" /db_xref="GeneID:9780504" /translation="MNAKRAIPVRERNIVLIGFMGVGKTTIGQLVAKKLYRDFIDIDL QIEKDFNMSIPEMFEKKGEAFFRQTEKDYILDICRNTKFKIVSLGGGSFKQEEIRQCC LENCLVLHLDLSWENWKQRADLLIESRPVLHNRSMEEMQQLFNERQSIYDKHNSKVAT DNLEPEEIADYIVETLKIGWDLYQPM" misc_feature 310403..310918 /gene="aroK" /locus_tag="BAMF_0290" /note="shikimate kinase; Reviewed; Region: aroK; PRK00131" /db_xref="CDD:178887" misc_feature 310412..310876 /gene="aroK" /locus_tag="BAMF_0290" /note="Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the...; Region: SK; cd00464" /db_xref="CDD:30188" misc_feature order(310436..310453,310736..310738,310760..310762, 310868..310870) /gene="aroK" /locus_tag="BAMF_0290" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:30188" misc_feature order(310448..310450,310496..310498,310502..310504) /gene="aroK" /locus_tag="BAMF_0290" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:30188" misc_feature order(310502..310504,310574..310576,310583..310585, 310640..310648,310814..310816) /gene="aroK" /locus_tag="BAMF_0290" /note="putative shikimate binding site; other site" /db_xref="CDD:30188" gene 311110..312066 /gene="cah" /locus_tag="BAMF_0291" /db_xref="GeneID:9778363" CDS 311110..312066 /gene="cah" /locus_tag="BAMF_0291" /EC_number="3.1.-.-" /function="16.8: Protect16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="S-deacylase" /protein_id="YP_003918887.1" /db_xref="GI:308172182" /db_xref="GeneID:9778363" /translation="MQLYDLPLDQLQTYKPNKTAPHDFADFWASSLHELAKEKAKPEL TPESYPADGVKVFRLKYRSFGKAEIEGWYAVPDRKGPHPAIVKYHGYNASYDGDIHDI VNWALHGYAAFGMLVRGQHSSTDTSVSPHGHVPGWMTKGILDKDTYYYRGVYLDAVRA LEVISGFDEVDETRIAVIGGSQGGGLSIAAAALSDIPRAVAADYPYLSNFERAIDVAL DEPYLEINSFFRKNGSPETEKTAMNTLAYFDIMNLADRVKAPVLMSIGLIDRVTPPST VFAAYNHLETEKELKVYRYFGHEYIPSFHTEKLAFLKAHLKG" misc_feature 311110..312057 /gene="cah" /locus_tag="BAMF_0291" /note="Acetyl xylan esterase (AXE1); Region: AXE1; pfam05448" /db_xref="CDD:191277" gene 312137..312922 /gene="ycgL" /locus_tag="BAMF_0292" /db_xref="GeneID:9778464" CDS 312137..312922 /gene="ycgL" /locus_tag="BAMF_0292" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918888.1" /db_xref="GI:308172183" /db_xref="GeneID:9778464" /translation="MKQRIIEELKRIEAQHDVKVLYAVESGSRAWGFPSSDSDYDVRF LYVPKKEWYFSIEPHRDVIEEPIHDMLDISGWELRKALRLFKKSNPPLLEWLSSEMIY YEAFSAAEKLRKLKTRAFSPEAGIHHYLNMAKRNEKTELRGGEVKIKKYFYVLRPLLA CRWIETFSSVPPMSFPVLADALLTDESLISEINSLLTRKKSGQELAPEPKNTIIHAFI EEEIERIGLYAKTIKTPKSDITEELNQLLIQTVEEAWEQKDGN" misc_feature 312137..312883 /gene="ycgL" /locus_tag="BAMF_0292" /note="Predicted nucleotidyltransferase; Region: Nuc-transf; cl01417" /db_xref="CDD:186431" gene 313044..314021 /gene="ycgM" /locus_tag="BAMF_0293" /db_xref="GeneID:9780536" CDS 313044..314021 /gene="ycgM" /locus_tag="BAMF_0293" /EC_number="1.5.1.2" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="proline oxidase" /protein_id="YP_003918889.1" /db_xref="GI:308172184" /db_xref="GeneID:9780536" /translation="MFCPFTIDSYKYFLDCGVLRLEVITRDFFLFLSKSSFLNKMARN WGSRVAAGKIIGGMDFRSSIPTIRHLNSQGLSVTVDHLGEFVNSGDVAKERTEECMQT IALIADEQLNSQVSLKMTSLGLDIDLDLVYENMTKILQTAEKHKVMVTIDMEDETRCQ KTLDIFKDFRSRYEYVSTVVQAYLYRTEKDLDDLGPLNPFLRLVKGAYKESEKVAYPE KSDVDENYKKLIRKQLLKGHYTAIATHDDKMIDFTKQLVKEHGIPNDRFEFQMLYGMR SQTQLSLVEEGYNMRVYLPYGDDWYGYFMRRLAERPSNIAFAFKGMTKK" misc_feature 313158..314018 /gene="ycgM" /locus_tag="BAMF_0293" /note="Proline dehydrogenase; Region: Pro_dh; cl03282" /db_xref="CDD:186561" gene 314040..315587 /gene="ycgN" /locus_tag="BAMF_0294" /db_xref="GeneID:9780537" CDS 314040..315587 /gene="ycgN" /locus_tag="BAMF_0294" /EC_number="1.5.1.12" /function="NAD-dependent aldehyde dehydrogenases" /note="1-pyrroline-5-carboxylate dehydrogenase; P5C dehydrogenase;, Delta-1-pyrroline-5-carboxylate dehydrogenase 2, Aldehyde dehydrogenase family, D1pyr5carbox2: delta-1-pyrroline-5-carboxylate dehydrogenase" /codon_start=1 /transl_table=11 /product="ABC-transporter ATP-binding protein" /protein_id="YP_003918890.1" /db_xref="GI:308172185" /db_xref="GeneID:9780537" /translation="MTTPYKHEPFTNFQDQSNVEEFKKALATVNEYLGKDYPLVINGE KVETEAKIVSINPADKEEVVGKVSKASQEHAEQAIEAAAKAFEEWRYTSPEERAAVLF RAAAKVRRRKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMVELAKGKPVNSH EGEKNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASATPVIAAKFV EVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPG QQHLKRVIAEMGGKDTVVVDEDADIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYD AVLERVIEITESKVTASPDSADVYMGPVIDQGSYDKIMSYIEIGKEEGRLVSGGTGDD SKGYFIKPTIFADLDPKARLMQEEIFGPVVAFSKVSNFDEALEVANNTEYGLTGAVIT NNRKHIERAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQA KTISEMF" misc_feature 314040..315584 /gene="ycgN" /locus_tag="BAMF_0294" /note="1-pyrroline-5-carboxylate dehydrogenase; Provisional; Region: PRK03137" /db_xref="CDD:179543" misc_feature 314052..315584 /gene="ycgN" /locus_tag="BAMF_0294" /note="Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA; Region: ALDH_PutA-P5CDH-RocA; cd07124" /db_xref="CDD:143442" misc_feature order(314445..314447,314583..314588,314598..314600, 314895..314897,314991..315002,315444..315446, 315459..315461,315465..315470,315489..315491) /gene="ycgN" /locus_tag="BAMF_0294" /note="Glutamate binding site [chemical binding]; other site" /db_xref="CDD:143442" misc_feature order(314511..314513,314517..314519,314532..314540, 314544..314546,314838..314843,314850..314852, 314880..314882,315396..315398,315417..315419, 315426..315428,315432..315449,315453..315455, 315471..315473,315477..315488,315498..315503, 315516..315518,315522..315524,315537..315539, 315546..315548,315558..315581) /gene="ycgN" /locus_tag="BAMF_0294" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:143442" misc_feature order(314571..314576,314652..314654,314658..314663, 314751..314753,314805..314807,314814..314816, 314823..314825) /gene="ycgN" /locus_tag="BAMF_0294" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143442" misc_feature order(314583..314585,314895..314897,314988..314990, 314997..314999) /gene="ycgN" /locus_tag="BAMF_0294" /note="catalytic residues [active]" /db_xref="CDD:143442" gene 315678..317132 /gene="ycgO" /locus_tag="BAMF_0295" /db_xref="GeneID:9780538" CDS 315678..317132 /gene="ycgO" /locus_tag="BAMF_0295" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="proline/ornithine permease" /protein_id="YP_003918891.1" /db_xref="GI:308172186" /db_xref="GeneID:9780538" /translation="MIISICIYMAGMLFIGYYAYRRTSNLTDYMLGGRSLGPAVTALS AGAADMSGWLLMGLPGAMFSTGLSGAWIVIGLVLGAWANWLFVAPRLRTYTEKAGNSI TIPGFLENRFGDHTKLLRLFSGLVILVFFTFYVSSGMVSGGVLFKSILGLNYHTGLWV VTGVVVAYTLFGGFLAVSWTDFVQGIIMFAALILVPIVTIFHTGGPGETVADIRSVNP ELFNMFKGTTVLGIISLFAWGLGYFGQPHIIVRFMAITSVKEIKRARRIGMGWMILSA LGALFTGLAGIAYYHQRGLKLADPETIFIQLGNILFHPIITGFLISAILAAIMSTISS QLLVTSSSLVEDLYKSMFRRSASDKELVFLGRMAVLAVSIIALVLAWEKNNTILGLVS YAWAGFGASFGPVVLLSLFWKRMTKWGALAGMIAGAITVIIWANAGLSGFLYEIIPGF AVSLAAVFVVSLLTQAPSKDVTDQFHEYRDTLSQ" misc_feature 315678..317117 /gene="ycgO" /locus_tag="BAMF_0295" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" gene 317290..318525 /gene="ycgP" /locus_tag="BAMF_0296" /db_xref="GeneID:9780539" CDS 317290..318525 /gene="ycgP" /locus_tag="BAMF_0296" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_003918892.1" /db_xref="GI:308172187" /db_xref="GeneID:9780539" /translation="MEELLERVFSFTDIDKLIDFISYELQKPVILESADFFLLAYNSY YINHFDSANQQTIFSKKCPVQIFERFLKDGVIEKLKTVPEPFRVEKIDSIGLNQRVVV SAKHKGEVMGYIWIQELDRNLTDEELNFLYETSFHVGKIIHKTNRVKQEKEERAEDLV KRAIFQQFSSEKEFRREAEKMNAVLPSVFSVVVLHAANGDGEAVEDVKENIKSYLNLR DKVSHVLTIDSNIVIVVASFSQKSSGTSAASEFIHKLLTHFHFQKIPTPIYIGIGNEY SSILKLGKSYIEALEVIKAAEITGNQENIPYEYSKLGIYRYLESIEEKNASLEYVNYD LALLKAKDRESSTELLKTLEIYLLNNCKTKPAAEQLFIHQNTLNYRIKQILDMTSIDL NDFRTRCQLYLDIMLMKKK" misc_feature 317314..318516 /gene="ycgP" /locus_tag="BAMF_0296" /note="Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG2508" /db_xref="CDD:32578" gene 318724..319734 /gene="ycgT" /locus_tag="BAMF_0297" /db_xref="GeneID:9780540" CDS 318724..319734 /gene="ycgT" /locus_tag="BAMF_0297" /EC_number="1.8.1.-" /function="16.6: Maintain16.8: Protect" /codon_start=1 /transl_table=11 /product="thioredoxin reductase" /protein_id="YP_003918893.1" /db_xref="GI:308172188" /db_xref="GeneID:9780540" /translation="MAENHEVYDVTIIGGGPVGLFAAFYCGMRELKTKVIEFLPRLGG KVSMFFPEKIIRDIGGIPGITGEQLIKQLKEQAATFEPDIVLNQRVTGFERLEDGTIV LESAEGEKHYTRTVILAVGMGTLEVNELNSADASRYSGKNLHYKVEKLDAFQGKHVVI SGGGDTAVDWANELEPIAASVTVLHRREEFGGLESSVAKMKRSSVRVLAPYRLKHING TGERIESVTVCQTESGLSEDIKLDELIINHGFKIDLGAMKDWGLEIEEGRIKADRHMR TNLPGVFVAGDAAYYESKLRLIAGGFTEGPTAVNSAKAYLDPQADHMAMYSTHHKKLV TQ" misc_feature 318739..319686 /gene="ycgT" /locus_tag="BAMF_0297" /note="Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; Region: TrxB; COG0492" /db_xref="CDD:30838" misc_feature 318745..>319086 /gene="ycgT" /locus_tag="BAMF_0297" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 319192..319386 /gene="ycgT" /locus_tag="BAMF_0297" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene complement(319781..321220) /gene="nasF" /locus_tag="BAMF_0298" /db_xref="GeneID:9780541" CDS complement(319781..321220) /gene="nasF" /locus_tag="BAMF_0298" /EC_number="2.1.1.107" /function="16.10: Respire16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="uroporphyrin-III C-methyltransferase" /protein_id="YP_003918894.1" /db_xref="GI:308172189" /db_xref="GeneID:9780541" /translation="MKNGIVYFVGAGPGDPGLITVKGKQALEKAEIILYDRLANPKFL EYASPECRFIYCGKLPDRHFMKQSEINALLIEKAAEGFTVVRLKGGDPSVFGRVGEEA EALHQHGIRYEMVPGITSGIAAPMYAGVPVTHRDFASSFAMITAHDKSLQGRPNLDWE GLARSVQTLVFYMGVKNLSFICRKLMEYGKSPSVPVLVIQWGTWGRQRSIKGTLHDIH EKVQSRKITNPAIIVIGDIVNFQTHSWFESKPFIGRHIMVVTHGDAEHTLTDKLREYG ADVIEWPKRIIKKMPVNETILKQIGTFEHIFFTSRLAVCEFFDTLAFNQIDIRRVTAN LNAATEAAQKELEKRGFLLSEYQSDSPHSLIVGSRQAAVNMPDSESCPFYVTHEHIAD ERFTSMIERTISESPLQMIICPDKEAAQHLISAGKEIGISPNPSANRPPVVCMGEDVP AGYGFTAVKNQEQLFAFIRNEMKEVLLHS" misc_feature complement(320474..321214) /gene="nasF" /locus_tag="BAMF_0298" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" misc_feature complement(319880..320464) /gene="nasF" /locus_tag="BAMF_0298" /note="Uroporphyrinogen-III synthase [Coenzyme metabolism]; Region: HemD; COG1587" /db_xref="CDD:31775" misc_feature complement(<320168..320419) /gene="nasF" /locus_tag="BAMF_0298" /note="Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations...; Region: HemD; cd06578" /db_xref="CDD:119440" gene complement(321287..321607) /gene="nasE" /locus_tag="BAMF_0299" /db_xref="GeneID:9779337" CDS complement(321287..321607) /gene="nasE" /locus_tag="BAMF_0299" /EC_number="1.7.1.4" /function="16.10: Respire16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="assimilatory nitrite reductase subunit" /protein_id="YP_003918895.1" /db_xref="GI:308172190" /db_xref="GeneID:9779337" /translation="MVNKDMTKVCIGRLNELPEKLGKTVYVEDKELAVFKLSDGSVRA VENRCPHKGGVLAEGIISGEYVFCPMHDWKISLEDGKVQEPDHGCIKTYDTLIEGENV YLLY" misc_feature complement(321296..321586) /gene="nasE" /locus_tag="BAMF_0299" /note="Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain...; Region: Rieske_NirD_small_Bacillus; cd03530" /db_xref="CDD:58553" misc_feature complement(order(321389..321391,321395..321397, 321404..321406,321452..321457,321461..321463)) /gene="nasE" /locus_tag="BAMF_0299" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:58553" gene complement(321638..324055) /gene="nasD" /locus_tag="BAMF_0300" /db_xref="GeneID:9779336" CDS complement(321638..324055) /gene="nasD" /locus_tag="BAMF_0300" /EC_number="1.7.1.4" /function="16.10: Respire16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="assimilatory nitrite reductase subunit" /protein_id="YP_003918896.1" /db_xref="GI:308172191" /db_xref="GeneID:9779336" /translation="MGKKQLVLVGNGMAGVRAIEEILRVSKDEFEITIFGAEPHPNYN RILLSKVLQGDTDIKDITLNDWDWYKENNIQLHTGETVIKVNPESKTVITDADRIQPY DELILATGSVPFILPIPGADKQGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEA ARGLLNLGMDVSVIHLAPFLMERQLDAAAGRLLQNELEKQGMTFLLEKQTEEILGTDS VEGVRFKDGTIIEADLVVMAVGIRPNTQLGAESGIPVNRGIIVNDYMQTEIPHIYAVG ECAEHRGIAYGLVAPLYEQAKVLAKHICGIETKPYEGSVLSTQLKVSGVEVFSAGDFN ESEDKKAIKVFDEQDGIYKKIVLRGNQIVGAVLFGDSSEGGRLFSMIQKEADISETSK ISILQPLDQEAGTSMTAAMSDDEIICGCNGVSKGAIIQAIQEKGCTSTDEIKACTGAS RSCGGCKPLVEDILQYTLGSEFDASAQKEAICGCTSLSRDEVVEEIKAKGLSHTREIM NVLGWKTPEGCSKCRPALNYYLGMINPATYEDDRTSRFVNERMHANIQKDGTYSVVPR MYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRIDLIGVKKEDLPKVWAELDMPSGYA YGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKKFEGLNTPHKVKMAVSACPRNCAES GIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTNEEVLEYAGAYLQYYRETANY LERTSAWLERVGLSHVQSVLNDPEKRQELNDRMNETLSVHKDPWQYFLNDKKASKDLF ENVVTTS" misc_feature complement(321683..324040) /gene="nasD" /locus_tag="BAMF_0300" /note="nitrite reductase [NAD(P)H], large subunit; Region: nitri_red_nirB; TIGR02374" /db_xref="CDD:162827" misc_feature complement(323375..>323551) /gene="nasD" /locus_tag="BAMF_0300" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(322664..322813) /gene="nasD" /locus_tag="BAMF_0300" /note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; cl01093" /db_xref="CDD:194032" misc_feature complement(322466..322615) /gene="nasD" /locus_tag="BAMF_0300" /note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; cl01093" /db_xref="CDD:194032" misc_feature complement(322202..322390) /gene="nasD" /locus_tag="BAMF_0300" /note="Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460" /db_xref="CDD:190643" gene 324713..325915 /gene="yciC" /locus_tag="BAMF_0302" /db_xref="GeneID:9779334" CDS 324713..325915 /gene="yciC" /locus_tag="BAMF_0302" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="metallochaperone with NTPase activity" /protein_id="YP_003918898.1" /db_xref="GI:308172193" /db_xref="GeneID:9779334" /translation="MKKIPVTVLSGYLGAGKTTVLNHILQNRNGLKIAVIVNDMSEVN IDAGLVKQGGGLSRTDEKLVELSNGCICCTLREDLLVEVEKLAKDGRFDYIVIESTGI SEPIPVAQTFSYIDEEMGIDLTAFCKLDTMVTVVDANRFWHDFQSGDSLLDRKEAAGE EDEREIADLLIDQIEFCDVLILNKRDMVGEKELEQLETVLRALQPRAKLIRSVRGEVS PECILNTGLFEFEEASSSAGWIKELTAGHEAHTPETEEYGITSFVYSRRLPFHTARFD SWLHQSMPDNIVRAKGIAWCATRNSLALLMSQAGPAVSIEPVSYWVAAMPKLEQEQIK QQEPEILEDWDAQFGDRHTNLVFIGTDLDQAAITKELDQCLLTPSEFDSDWSQLEDPF QWDIQRAE" misc_feature 324722..325843 /gene="yciC" /locus_tag="BAMF_0302" /note="Putative GTPases (G3E family) [General function prediction only]; Region: COG0523" /db_xref="CDD:30869" misc_feature 324725..325273 /gene="yciC" /locus_tag="BAMF_0302" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature 325487..325837 /gene="yciC" /locus_tag="BAMF_0302" /note="Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; cl08458" /db_xref="CDD:158345" gene 325958..327115 /gene="RBAM_003560" /locus_tag="BAMF_0303" /db_xref="GeneID:9780542" CDS 325958..327115 /gene="RBAM_003560" /locus_tag="BAMF_0303" /EC_number="1.1.1.284" /function="Threonine dehydrogenase and related Zn-dependent dehydrogenases" /note="Alcohol dehydrogenase 1; Alcohol dehydrogenase subunit alpha; ADH3;, Alcohol dehydrogenase superfamily, zinc-containing, Alcohol dehydrogenase GroES-like domain, fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent" /codon_start=1 /transl_table=11 /product="glutathione-dependent formaldehyde dehydrogenase" /protein_id="YP_003918899.1" /db_xref="GI:308172194" /db_xref="GeneID:9780542" /translation="MKKELTNVKALTYQGKEHIEVKEVPAPSIQDERDVIVRITATGI CGSDLHLYKNGIPADPGYIVGHEPMGIVEETGSQVKRLKKGDRVVIPFNIGCGECHYC KHQMESQCDESNPNPHTDAGGLFGFSEFNGNYPGGQAEYLRVPFADFSSFLVPADSGL EDEQVLLLSDVMPTAFWSVQHSGVKKGDTVVILGSGPIGLMAQKFAWKKGAKRVIAVD QVPQRLEHARRTNGAETFNFSEHDEIGKLLHEQTSGGADVVIDCVGMDGTPLSKEKAE QKPNQFGTISPILTASEAVKKFGTVQLTGAYISEADGFPLGDFFTRNVSLKMGQAPVI HLMPMLYQMVEQNEIDPTDIITHKMSLAEAPAAYDIFDKKEDGNIKVILKP" misc_feature 325982..327112 /gene="RBAM_003560" /locus_tag="BAMF_0303" /note="Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1; Region: FDH_like_1; cd08283" /db_xref="CDD:176243" misc_feature 325982..327112 /gene="RBAM_003560" /locus_tag="BAMF_0303" /note="Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063" /db_xref="CDD:31263" misc_feature order(326090..326098,326105..326107,326231..326233, 326465..326467,326477..326479,326534..326539, 326543..326551,326606..326614,326624..326626, 326669..326671,326741..326749,326867..326875, 326942..326950,327068..327070) /gene="RBAM_003560" /locus_tag="BAMF_0303" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:176243" misc_feature order(326090..326092,326096..326098,326153..326155, 326465..326467) /gene="RBAM_003560" /locus_tag="BAMF_0303" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176243" misc_feature order(326243..326248,326252..326254,326261..326263, 326285..326287) /gene="RBAM_003560" /locus_tag="BAMF_0303" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176243" gene 327130..327564 /gene="yckC" /locus_tag="BAMF_0304" /db_xref="GeneID:9779696" CDS 327130..327564 /gene="yckC" /locus_tag="BAMF_0304" /codon_start=1 /transl_table=11 /product="integral inner membrane protein" /protein_id="YP_003918900.1" /db_xref="GI:308172195" /db_xref="GeneID:9779696" /translation="MNIYRPAGFWIRLGALVLDYLITSVPLAIIFMLATGKDPNDSTM ISIILTLYSLLLPVYWNGYVIGKKICGIRIVKKDGTQVGFLTMILRVLVGALIYGVTF GIGVIVSAFMVGMREDKRSIHDFVAGTYVTYALPDESIEKSE" misc_feature 327145..327513 /gene="yckC" /locus_tag="BAMF_0304" /note="RDD family; Region: RDD; cl00746" /db_xref="CDD:193923" gene 327638..327961 /gene="yckD" /locus_tag="BAMF_0305" /db_xref="GeneID:9780543" CDS 327638..327961 /gene="yckD" /locus_tag="BAMF_0305" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918901.1" /db_xref="GI:308172196" /db_xref="GeneID:9780543" /translation="MKKAALSLAAFFITAMVFTMPAHAAETKMPSTMSLTQQQKKEIE SLEKEILEKRKHVISKYVEYGVLPKEKAEHIKQHMDRHFNMMKQNGFIPKPPPHKLEK RHHHS" misc_feature 327740..327916 /gene="yckD" /locus_tag="BAMF_0305" /note="Protein of unknown function (DUF2680); Region: DUF2680; pfam10925" /db_xref="CDD:151372" gene 328066..329502 /gene="bglC" /locus_tag="BAMF_0306" /db_xref="GeneID:9780544" CDS 328066..329502 /gene="bglC" /locus_tag="BAMF_0306" /EC_number="3.2.1.21" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="aryl-phospho-beta-d-glucosidase" /protein_id="YP_003918902.1" /db_xref="GI:308172197" /db_xref="GeneID:9780544" /translation="MIHEKPGLFPDTFLWGSASAAYQVEGAWNTDGKGPSVWDFFTKI PGKTFKGSNGDTAVGHYERYKEDIALMAEMGLKAYRFSVSWPRIFPKGRGEINEAGIA FYENLIDELISNNIEPVLTLYHWDLPQALMDEYGGFESRKIIDDFNNYCVALYKRFAG KVKYWVTLNEQNYNFHNGFITASHPPGVKDRKRFYEANHIAFLANAKAIESFRKYVPD GLIGPSFAYSPAYPLTSHPEDITAFENAEEFMNHWWLDMYCWGTYPQIPFSYLKEKGW APAIEAGDMELLAKGKPDFIGVNYYQTITYERNPLDGVSEGKMNTTGQKGTNQDTGIP GLFKTKKNPDLVTSNWDWTIDPTGLRIGLRRITSRYQLPVFVTENGLGEFDKIEEDGS IQDDYRIDYLRSHLEQCREAISDGVNLIGYCSWSFTDLLSWLNGYQKRYGFVYINRDE EDEKDLKRIRKKSFYWYQNVIETNGKSL" misc_feature 328090..329493 /gene="bglC" /locus_tag="BAMF_0306" /note="Glycosyl hydrolase family 1; Region: Glyco_hydro_1; cl01046" /db_xref="CDD:186308" gene complement(329543..329941) /gene="nin" /locus_tag="BAMF_0307" /db_xref="GeneID:9778420" CDS complement(329543..329941) /gene="nin" /locus_tag="BAMF_0307" /note="DNA-entry nuclease inhibitor; Competence protein J" /codon_start=1 /transl_table=11 /product="DNA-entry nuclease inhibitor Competence protein J" /protein_id="YP_003918903.1" /db_xref="GI:308172198" /db_xref="GeneID:9778420" /translation="MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEAD DAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPFEAVKDGIEIESVMSKRLFFDLP KGRYSLTCYSVPAEISDLHADTYIIDAAAM" misc_feature complement(329546..329917) /gene="nin" /locus_tag="BAMF_0307" /note="Competence protein J (ComJ); Region: ComJ; pfam11033" /db_xref="CDD:151480" gene complement(329962..330399) /gene="nucA" /locus_tag="BAMF_0308" /db_xref="GeneID:9779349" CDS complement(329962..330399) /gene="nucA" /locus_tag="BAMF_0308" /EC_number="3.-.-.-" /note="DNA-entry nuclease; Competence-specific nuclease" /codon_start=1 /transl_table=11 /product="competence-specific nuclease" /protein_id="YP_003918904.1" /db_xref="GI:308172199" /db_xref="GeneID:9779349" /translation="MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVIL FPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRREQSLKHVPVKTGYDRDEWPMAV CKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK" misc_feature complement(<330109..330288) /gene="nucA" /locus_tag="BAMF_0308" /note="Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]; Region: GlnS; COG0008" /db_xref="CDD:30358" gene complement(330751..331308) /gene="hxlB" /locus_tag="BAMF_0309" /db_xref="GeneID:9779374" CDS complement(330751..331308) /gene="hxlB" /locus_tag="BAMF_0309" /function="16.8: Protect16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="6-phospho-3-hexuloisomerase" /protein_id="YP_003918905.1" /db_xref="GI:308172200" /db_xref="GeneID:9779374" /translation="MKTTEYLHDILNELSRTASLIADSEADKLAEQILSADQIFTSGA GRSGFMAKAFAMRMMHIGLNAYIVGETLTPPLQEGGLVIIGSGSGETKSLLHTAEKAK SLNGIITALTINPASSLGKLADLTITIPGSPKEETDGDRKTIQPMGSLFEQTLLLFYD AVILKIMEKKELNSADMFTKHANLE" misc_feature complement(330763..331299) /gene="hxlB" /locus_tag="BAMF_0309" /note="Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with...; Region: SIS_PHI; cd05005" /db_xref="CDD:88402" misc_feature complement(order(330766..330777,330814..330819, 330826..330831,330850..330852,330862..330864, 331009..331011,331018..331020,331030..331035, 331087..331098,331114..331116,331132..331134, 331138..331143,331150..331155,331162..331164, 331171..331173,331276..331278,331285..331293)) /gene="hxlB" /locus_tag="BAMF_0309" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:88402" misc_feature complement(order(331045..331053,331168..331170)) /gene="hxlB" /locus_tag="BAMF_0309" /note="active site" /db_xref="CDD:88402" gene complement(331305..331940) /gene="hxlA" /locus_tag="BAMF_0310" /db_xref="GeneID:9779038" CDS complement(331305..331940) /gene="hxlA" /locus_tag="BAMF_0310" /function="16.8: Protect16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="3-hexulose-6-phosphate synthase" /protein_id="YP_003918906.1" /db_xref="GI:308172201" /db_xref="GeneID:9779038" /translation="MELQLALDLVNIPEAIELVKEVEQYIDVVEIGTPVVINEGLRAV QQMKEAFPHLKVLADLKIMDAGGYEIMKAAEAGADIITVLGATDDSTIKGAVSEAKKQ QKKILVDMINVKDLETRATEIDQLGVDYICVHTGYDLQAEGKNSFGELTAIKKAVKNT KTAIAGGIKLDTLPEAIKQNPDLIIVGGGITGADDKADAASKMKQLITQGS" misc_feature complement(331365..331940) /gene="hxlA" /locus_tag="BAMF_0310" /note="3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for...; Region: KGPDC_HPS; cd04726" /db_xref="CDD:73388" misc_feature complement(order(331377..331382,331440..331442, 331446..331448,331539..331541,331758..331760, 331764..331766,331851..331853,331917..331919, 331923..331925)) /gene="hxlA" /locus_tag="BAMF_0310" /note="active site" /db_xref="CDD:73388" misc_feature complement(order(331527..331535,331539..331541, 331587..331589,331605..331607,331668..331670, 331683..331685,331725..331727,331743..331751, 331818..331823,331830..331832,331911..331913)) /gene="hxlA" /locus_tag="BAMF_0310" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73388" misc_feature complement(order(331764..331766,331851..331853)) /gene="hxlA" /locus_tag="BAMF_0310" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:73388" gene 332172..332534 /gene="hxlR" /locus_tag="BAMF_0311" /db_xref="GeneID:9779037" CDS 332172..332534 /gene="hxlR" /locus_tag="BAMF_0311" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="positive regulator of hxlAB expression" /protein_id="YP_003918907.1" /db_xref="GI:308172202" /db_xref="GeneID:9779037" /translation="MSRMDKKTFNCEKELTLAVIGGKWKMLIMWHLGKEGTKRFNELK ALIPDITHKILVNQLRELEQDLIVHREVYPVVPPKVEYSLTAQGESLMPILDAMYKWG KEYMELINIDKTAIKESF" misc_feature 332226..332498 /gene="hxlR" /locus_tag="BAMF_0311" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 333124..343878 /gene="srfAA" /locus_tag="BAMF_0312" /db_xref="GeneID:9779039" CDS 333124..343878 /gene="srfAA" /locus_tag="BAMF_0312" /EC_number="5.1.1.12" /function="Non-ribosomal peptide synthetase modules and related proteins" /codon_start=1 /transl_table=11 /product="non-ribosomal surfactin synthetase SrfAA" /protein_id="YP_003918908.1" /db_xref="GI:308172203" /db_xref="GeneID:9779039" /translation="MGITFYPLTNAQKRIWYTEKFYPHTSISNLAGFGKLISEDGVQA HFVEKAIQEFVRRHESMRIRLRLDDEGEPVQYVSEYRPLTIKHTDIRQAGCSADELSK WGRDEASKPLALYDQDLFRFSVHTISEKEVWFYVNVHHVISDGISMTILGNTITDIYL ELSGGASENEAEIPSFIEHVLTEQEYVQSKRFKKDRDFWNGQFETVPELVSLKRSQAD AGLDAKRFSQEIPHDLYGRIQSFCGEHKVSVLSLFQSALIAYLYKVTGRDDVVTGTFM GNRTNAKEKQMLGMFVSTVPVRTSVDGGQSFLEFVKGRMKDLMKILRHQKYPYNLLVN DLRASKSSLSRLFTVSLEYQVMQWQKKENLSFLTDPIFSGSGTNDISIHVKERWDTGK LTIDFDYRSDIFKAEEIKSVSERLITLIEDAISSPDRVIDELALLSDSEKEMLLKRAS GNQVAYRKEMTIPALFEEKAKTLSDKPAVVYEGRTLSYRTLHDQSNRIAGRLLKAGIS ADSPVAVLLGRSERVIAAILGILKAGSAYVPIDPDFPADRIQYILEDSGAKAVLTEAG IQARETDAEWIDFDEAVQYEAAAEGVGTQSDRLAYIIYTSGTTGRPKGVMIEHRQVHH LVQSLQQEIYQCGEQTLRMALLAPFHFDASVKQIFASLLLGQTLYIVPKTTVTNGSAL LDYYRQNRIEATDGTPAHLQMMVAAGDVSGIELRHMLIGGEGLSAAVAEQLLQLFHQT GRAPRLTNVYGPTETCVDASVHPVSADNGMMQQAAYVPIGKPLGNARLYILDKHKRLQ PDGTAGELYIAGDGVGRGYLNLPDLTAEKFLQDPFSESGRMYRTGDMARWLPDGTIEY IGREDDQVKVRGYRIELGEIETVLRKAPGAAEAVVLARPDQQGSLDVCAYIVQEKGTE FHPAEYREYVSKHLPDYMVPAYFTKTDKIPLTPSGKADRKKLFALDVQAVSSSEYASP RNETEETLAVIWQEVLGMDKAGIYDHFFESGGHSLKAMTLLTKIHKQMGVEIPLQYLF EHPTIAALADYAASRNEGPAFSTIEPAEKQASYPLSLAQQRVYIASQFEDAGVGYNMP AAAMIEGALDREKLERAFSALISRHEALRTSFQSEDGTPRQVIHEQVPFHIEVIEAGG RTNEQVMKDFVRRFELEEAPLFRIGLQTLGHNRHMMLFDMHHLISDGVSISIMLKELA DIYGGKQLPELSIQYKDYAVWQAERAEEGYKKERAYWKEVFSGELPVLQLLPDYPRPQ VQSFEGDRVSVKLPKTLRERLQKLAEKNGATLYMVLLSAYYTLLSKYSGQEDIIVGTP SAGRHHSDTEGLIGMFVNTLALRSTVKQDQTFTGLLGHVRKQVLDAFSHQDYPFEWLT EELNVPRDMSRHPIFDTMFSLQNISDGIPEIGNLTLSLHETNFNIAKFDLTMQARETA EGVALDLDYCTKLFKRSTADRMLTHYVRLLESAAAQPEAKISEYDLLSEREALNQLQR FNPERTAYPKDQTIVQIFEEQAQKNPDRTALQFEGETLSYQQLNERANRLARHILSAG GSGKTAAVLCERSLDMIVSIMAVLKAGSAYVPIDPEHPVQRIQHFFRDSGASVLLTQR SLKPIAEKAGFQGVILLADDEESYEKDSHNLALPFDSKTIANLTYTSGTTGTPKGNIV THANILRTVKNTNYLTVSEEDTVLGLSNYVFDAFMFDMFGSLLNGAKLVIVPKDTVLD MSRLSRVIKRENVSILMITTALFHLLVDMEPSCLTTLRKIMFGGERASVEHVKKALAA VGKGRLLHMYGPSESTVFATYHPVDVIEEDAISVPIGKPVSNTEIFIMNKAGRIQPAG IPGELCVSGEGLVEGYYNRPELTEEKFVKHPFKEGERMYKTGDLARWLPNGDIEFIGR IDHQVKIRGQRIELGEIEHQLQSHDQVQECIVLAVDQGAGDKLLCAYFVGLREISSRE LREHTAKDLPAYMIPAVFIQMDELPLTGNGKIDRRALPMPDVTAANAVSYTAPRNETE QKLTDIWAEVLQMERVGIHDQFFEIGGHSLAGMKLLALIQQTFGVRLTLKDLFTSPTA AGLAKLIAGSERKAAESIMPAAVRETYPVSSPQKRMFVLQQLEGAETSYNMPSVLRLK GKLDAEKLKSVMKQLTERHEAFRTTFDIKDGETVQRIWAEADIDMEYYEASEEDAEQI IQSFIRPFRLDQLPLVRTGLVKLAEHDHLLLFDMHHIISDGASVGVLIDELSRLYGGE TLEPLRIHYKDYAVWQQTFIESEQYRKQEEHWLRELDGELPVLTLPADYSRPAVQTFE GDKLVFSLTEKQTSALRSLAKQTGSTMYMVLLASYSAFLSKLSGQHDIIVGSPVAGRS HADLANVIGVFVNTLALRTYPEADKTFADYLEEVKQTALRAFDAQDYPLEDLLQKVEV QRDTSRNPLFDAVFSMQNANAEDLVMEGIELKHHPFDRKTAKFDLTMTADDTDGGLTF VLEYNTALFKPETAETWKHYWLHLLEAAAENPAAKLSELSLVNETEKQALLNAWKGKT LSVPRDKTVHRLFEETAARHTDRPAVAYNGVKWTYGELNARANRIARILMDCGVTADE RIGILTKPSLEMAAGVLGVLKAGAAFVPIDPDYPEERISYILQDSGAKLLLTQEALDV PDGYTGETILLDGSRSILSLPLDENDEANPQTETTADHLAYMIYTSGTTGQPKGVMVE HHALVNLCFWHHDAFAMTADDKSAKYAGFGFDASIWEMFPTWTIGAELHVIDEAIRLD ITRLNHYFQEHGVTITFLPTQLAEQFMELENSSLRMLLVGGDKLKRAVKQPYTIVNNY GPTENTVVATSGVINPEEDSLSIGRAIANTRAYILGDGDQVQPEGIAGELCVAGRGLA RGYLNREEETAKRFTADPFVPGERMYRTGDLVKWNTQCGIEYIGRIDQQVKVRGYRIE LSEIEVRLAQLAGVHDAAVTAVEDKAGNTALCAYVAPQQTDIEALKAALKDTLPDYMV PAFWVEMDELPVTANGKIDKKALPSPDIEAGSAAYKAPETEMETLLSDIWQEVLGLEQ IGVSDNFFTLGGDSIKGIQMASRLNQHGYKLEMKDLFQHPTIEELVSYVERTEGKQAD QGPVEGEADLTPIQRWFFEKNFTDKHHWNQSVMLHAKDGFDPAVTEKTLHVLTAHHDA LRMIYREQKPYYRGLEDAPVELNVFELNGLAEDHEDRIEREADRLQSSISLETGPLLK AGLFRAEDGDHLLLAIHHLVVDGVSWRILLEDFTSVYTQLKQGNEPALPPKTHSFAEF AERIKEYANTKAFLKEADYWKELEEKEVCTQLPKDRQSSDQRMKYTRTVSFSLTAEQT EQLTTNVHEAYHTEMNDILLTALGLALKEWTGEDTIGVHLEGHGREDILDGLNITRTV GWFTSMYPMILEMKHADDLSYQLKQMKEDIRHIPNKGVGYGILRYVTAPEHKENLSFE IDPDISFNYLGQFNEMSDSGLFTRSDMPSGQSLSPDTEKPNALDIVGFIENGQMTMTF AYHSLEFHEKTIQSFSDSFKGHLLEIIDHCLSQDGPELTPSDLGDDDLTLDELDKLME IL" misc_feature 333133..334029 /gene="srfAA" /locus_tag="BAMF_0312" /note="Condensation domain; Region: Condensation; cl09290" /db_xref="CDD:197435" misc_feature 333811..335775 /gene="srfAA" /locus_tag="BAMF_0312" /note="Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020" /db_xref="CDD:31223" misc_feature 334912..336000 /gene="srfAA" /locus_tag="BAMF_0312" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature 336055..336246 /gene="srfAA" /locus_tag="BAMF_0312" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" misc_feature 336310..337164 /gene="srfAA" /locus_tag="BAMF_0312" /note="Condensation domain; Region: Condensation; cl09290" /db_xref="CDD:197435" misc_feature 336946..338898 /gene="srfAA" /locus_tag="BAMF_0312" /note="Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020" /db_xref="CDD:31223" misc_feature 337720..339129 /gene="srfAA" /locus_tag="BAMF_0312" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature 339172..339366 /gene="srfAA" /locus_tag="BAMF_0312" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" misc_feature 339412..340281 /gene="srfAA" /locus_tag="BAMF_0312" /note="Condensation domain; Region: Condensation; cl09290" /db_xref="CDD:197435" misc_feature 340063..341991 /gene="srfAA" /locus_tag="BAMF_0312" /note="Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020" /db_xref="CDD:31223" misc_feature 341113..342198 /gene="srfAA" /locus_tag="BAMF_0312" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature 342265..342450 /gene="srfAA" /locus_tag="BAMF_0312" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" misc_feature 342487..343389 /gene="srfAA" /locus_tag="BAMF_0312" /note="Condensation domain; Region: Condensation; cl09290" /db_xref="CDD:197435" misc_feature 343399..343806 /gene="srfAA" /locus_tag="BAMF_0312" /note="non-ribosomal peptide synthase domain TIGR01720; Region: NRPS-para261" /db_xref="CDD:162503" gene 343900..354660 /gene="srfAB" /locus_tag="BAMF_0313" /db_xref="GeneID:9780206" CDS 343900..354660 /gene="srfAB" /locus_tag="BAMF_0313" /EC_number="5.1.1.3" /function="Non-ribosomal peptide synthetase modules and related proteins" /note="Bacitracin synthetase 1; BA1; Includes: RecName: Full=ATP-dependent isoleucine adenylase; IleA; Isoleucine activase; Includes: RecName: Full=ATP-dependent cysteine adenylase; CysA; Cysteine activase; Includes: RecName: Full=ATP-dependent leucine adenylase; LeuA; Leucine activase; Includes: RecName: Full=ATP-dependent glutamate adenylase; GluA; Glutamate activase; Includes: RecName: Full=ATP-dependent isoleucine adenylase; IleA; Isoleucine activase; Includes: RecName: Full=Glutamate racemase;, Amino acid adenylation, AMP-binding enzyme, AA-adenyl-dom: amino acid adenylation domain" /codon_start=1 /transl_table=11 /product="nonribosomal surfactin synthetase SrfAB" /protein_id="YP_003918909.1" /db_xref="GI:308172204" /db_xref="GeneID:9780206" /translation="MSKKSIQKVYALTPMQEGMLYHALLDPHSTSYFTQLELRIHGCF QLELFEKSVNELIRTYDILRTVFVHQQLQKPRQVVLAERKTKVHYEDISQLDEERQTE YIERYKRDVQQQGFHLAKDILFKAAVFRLSEKELYLVWSNHHIVMDGWSMGVLMKSLF QNYEALRAGRPAGGSQGKPYSDYIKWLGGRDYDEAEQYWSSRLADFEQPSLLPGRLAS EKKGYQNEEYSFVWDEELVAQIQQTANRHQVTGPNLFQAVWGAVLSKYNYTDDVVFGT VVSGRPSEINGIETMAGLFINTIPVRIKIDKEASFSDVMTAVQKNAVEAERYDYVPLY DIQKRSALDGSLLNHLVAFENYPLDKELENGGMEERLGFSIKVEHAFEQTSFDFNLIV YPGKTWTVKIKYNGAAFAHDAIERTAHHLTRMMKAAVGTPDAPVRDLGLVSGEEERQI VEIFNDTKTELPKEEAVHRLFEAQANRTPASIAIKEDGHEWTYREVNEAANRLARHLV GNGLEKGRTAAIMNDRSAETVIGMLAVLKAGGAYVPIDPAFPEDRLRFMAEDSSIQLV LTVQAYQEQAGTLQVPVIMLDESTDEKVSGTDLNLPSGGNDLAYIMYTSGSTGKPKGV MIEHRNIIRLVKHSNYVPVHEEDRMAQTGAVSFDAGTFEVFGALLNGASLHPVKKETL LDAGQFAQFLKEQRITTMWLTSPLFNQLAQKDAGMFNTLRHLIIGGDALVPHIVSKVR KASPELSLWNGYGPTENTTFSTSFLIDQDYEGSVPIGKPIGNSTAYIMDENRNLQPIG APGELCVGGSGVARGYVNLPELTEKQFVCDPFRPDEMIYRTGDLAKWLPDGTIEFLGR IDNQVKVRGFRIELGEIEAKISQAENVTESAAVIRKNKADENEICAYFTADQALSPED LRKALSESLPEYMIPAHFIQMNQFPLTANGKIDKKALPEPQTEAVQKEYEAPKTEAEQ KLADIWEGILGVKAGVTDNFFTIGGHSLKAMMMTAKIQEHFQKEVPIKVLFEKPTIQE LAHYLQHESEEEQQFEPIRQAPYQKHYPVSSAQRRMYILNQLGQASTSYNVPAVLLLE GSVDKNRLEGAMQALINRHETLRTSFDMADGEVVQTIHKNVSFELETAEVREEDAEEL TKAFIRPFALNRAPLVRSKLIRIEEDRYLLLIDMHHIITDGSSMGIFIGDLAKLYQGT ELAPPKIHYKDFSVWQREKANLDQHEAYWLDRFKGDLPVLDLPLDFPRPAERSFEGER VIFGLDKQVTAQIKTLLADTDTTMYMFLLAAFQVLLSKYSGQEDIIVGSPAAGRQHPD LQEVPGMFVNTVALRSHPSGKKTFKQFLDEVKTASLQAFEHQSYPLEELIEKLPLTRD TSRSPLFSVLFNMQNMEIPSLRLGDLQISSYSMHHHVAKFDLSLEAAERGEEVGLSFD YAKALFADETIRRWSTHFVNLIKACAENPDIQLADASLLSASEREALLSDEKRTEADL PEGTFVSLFERQAQKTPDLTAVAGGTSLTYRELDEQSNRFARHLQSCGAGSEDIVAIM MDRSADLITAILGVMKAGAAFLPIDPETPEERIRYSLEDSGTKLLVVNERNMTAAAVY NGKTVVMEDGEWRNESADRLETEPGAGQLAYIIYTSGTTGKPKGVQLEHRNLVNYVTW FSREAGLTEADKSVLLSSYAFDLGYTALFPILQAGGELHIVPKETYTAPDQLGEYIEK NGITYMKLTPSLFHMIVNTARFAEERRFSPLRLVVLGGEKIITSDVRKFHDVYAHTDF INHYGPTETTIGAIAGRINMERLDQYEQRPVIGRPIANTGALVLDGSMQLVPSGASGE LYITGKGLARGYLHRPQLTAEKFLPNPFSPGSLMYKTGDVVRRLSDGTIEFIGRADDQ VKIRGYRIELKEVETVLLSINGIQEAVVLAVSEGGLPELCAYYKSDSDLKGSELRKRL SETLPSHMLPAYFVQVDHIPLTANGKTDKNALPKPGASQTAQAASALPETELEEKLCR IWQKTLGADSLGIDDNFFDYGGHSLKGMMLLANIQAELDKTVPLKALFEQPTVRQLAV YIEKSAVSEGYRMIRPAGAADVYPLSSAQKRMYVLNQLDRDTISYNMPSVLLMEGEVN ISRLQEALNQMINRHESLRTSFIDQKGRPMQRIAEQADIELHVLEAADEEKADLIIRA FIKPFDLSAAPLIRAALVRLNEKKHLLLLDMHHIIADGVSRSMLVKELAHLYKGGSLP APNLHYKDFAVWQNEPEQAERMKEHERYWLSAFSGELPELNLPTDFPRPAVQSFKGQS VRFRAGVETEKAVRELMDASGATLHMVLHAAFHVFLSKITGQRDIIIGSVTAGRTSAE VQQMPGMFVNTLALRNETRKEQTFAELLERVKQTNLDALAHQEYPFEDLIGKLDLPRD MSRNPLFQVMVTTEDPDKETLELENLRITPYESNQGTAKFDLTLGGFTDQEGLGLQFE YATDLFKKETIEKWSAGFLRILKEAAESPDRKLPELSLISDAEQQALLNAWKGKTLSV PRDKTVYRLFEETAARHTDRPAVAYNGVKWMYGELNARANRIARILMDCGATADERIG ILTKPSLEMAAGVLGVLKAGAAFVPIDPDYPEERISYILQDSGAKLLLTQEALDVPDG YTGETILLDGSRSILSLPLDENDEANPQTETTADHLAYMIYTSGTTGQPKGVMVEHHA LVNLCFWHHDAFAMTADDKSAKYAGFGFDASIWEMFPTWTIGAELHVIDEAIRLDITR LNHYFQEHGVTITFLPTQLAEQFMELENSSLRMLLVGGDKLKRAVKQPYTIVNNYGPT ENTVVATSGVINPEEDSLSIGRAIANTRAYILGDGDQVQPEGIAGELCVAGRGLARGY LNREEETAKRFTADPFVPGERMYRTGDLVKWNTQCGIEYIGRIDQQVKVRGYRIELSE IEVRLAQLAGVHDAAVTAVEDKAGNTALCAYVAPQQTDIEALKAALKDTLPDYMVPAF WVEMDELPVTANGKIDKKALPSPDIEAGSAAYKAPETEMETLLSDIWQEVLGLEQIGV SDNFFTLGGDSIKGIQMASRLNQHGYKLEMKDLFQHPTIEELVSYVERTEGKQADQGP VEGEADLTPIQRWFFEKNFTDKHHWNQSVMLHAKDGFDPVLVEKTLQALIEHHDALRM VYREEREGVIQTYLPVSECKTSFEIVDLFGTDEDMLKSQIQRLADHLQGSLDLRNGPL LKAEQYRTEQGDHLLIAIHHLVVDGVSWRILLEDFASGYKQAQQQNSIVFPQKTHSFK DWAEALHTFAQSDELKKQADYWARADAEQLPRLPKDRDTKKRLVKHTAAVKCELTEEE TAQLLTDVHHPYGTEINDILLSALGLTIGEWTENGKVGINLEGHGREEIIPNVNISRT VGWFTAQYPLILQVSKEDGVSSVIKTVKETVRRVPDKGVGYGILRYLSPDETERSFTP EISFNYLGQFDNEVKTEWFEPSPYDMGRQVSEESEALYALSFSGMITGGRFVISCSYN QEEYERSTVETQIERFKDNLLMIIRHCTAKEEKEFTPSDFSAKDLEMDEMGDIFDMLE ENLT" misc_feature <343912..347028 /gene="srfAB" /locus_tag="BAMF_0313" /note="peptide synthase; Provisional; Region: PRK12316" /db_xref="CDD:183432" misc_feature 343915..344817 /gene="srfAB" /locus_tag="BAMF_0313" /note="Condensation domain; Region: Condensation; cl09290" /db_xref="CDD:197435" misc_feature <346381..346755 /gene="srfAB" /locus_tag="BAMF_0313" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature 346813..347004 /gene="srfAB" /locus_tag="BAMF_0313" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" misc_feature 347059..347916 /gene="srfAB" /locus_tag="BAMF_0313" /note="Condensation domain; Region: Condensation; cl09290" /db_xref="CDD:197435" misc_feature 347698..349662 /gene="srfAB" /locus_tag="BAMF_0313" /note="Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020" /db_xref="CDD:31223" misc_feature 348475..>348927 /gene="srfAB" /locus_tag="BAMF_0313" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature <348811..349869 /gene="srfAB" /locus_tag="BAMF_0313" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature 349933..350127 /gene="srfAB" /locus_tag="BAMF_0313" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" misc_feature 350182..351042 /gene="srfAB" /locus_tag="BAMF_0313" /note="Condensation domain; Region: Condensation; cl09290" /db_xref="CDD:197435" misc_feature 350839..352758 /gene="srfAB" /locus_tag="BAMF_0313" /note="Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020" /db_xref="CDD:31223" misc_feature 351880..352965 /gene="srfAB" /locus_tag="BAMF_0313" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature 353032..353217 /gene="srfAB" /locus_tag="BAMF_0313" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" misc_feature 353254..354168 /gene="srfAB" /locus_tag="BAMF_0313" /note="Condensation domain; Region: Condensation; cl09290" /db_xref="CDD:197435" misc_feature 354181..354630 /gene="srfAB" /locus_tag="BAMF_0313" /note="non-ribosomal peptide synthase domain TIGR01720; Region: NRPS-para261" /db_xref="CDD:162503" gene 354695..358534 /gene="srfAC" /locus_tag="BAMF_0314" /db_xref="GeneID:9780207" CDS 354695..358534 /gene="srfAC" /locus_tag="BAMF_0314" /EC_number="5.1.1.11" /function="Non-ribosomal peptide synthetase modules and related proteins" /codon_start=1 /transl_table=11 /product="nonribosomal surfactin synthetase C" /protein_id="YP_003918910.1" /db_xref="GI:308172205" /db_xref="GeneID:9780207" /translation="MSQFSKDQVQDMYYLSPMQEGMLFHTLLNPGQSFYIEQMTMKVK GDFSVRMLEESMNVIVDRYDIFRTVFIHEKVKRPVQVVLKKRTFHIDEIDLTHLSESE QMTAINEYKEKDKVKGFQLTRDIPMRAAVFKKADKRYEWVWSYHHILLDGWCFGVVVQ DLFQVYNALRENKPYSLKPVKPYKEYIKWLEKQDKQASLSYWGGYLADFEGQTTFAEQ RNKQKAEYQPKELLFSLPEAETKAFTELAKSQHTTLSTALQAVWSLILGRYQRTDDVM FGTVVSGRPADIKGVEHMVGLFINVVPKRVRLTDGMNFKDLLRHLQEQSLESEPHQYV PLYDIQSQASQQKLIDHIIVFENYPLQDADSKEARQNGFEMEDVHVFEKSNYDLNVMA SPGEQMLIKLAYNESVFDEAFISRLKSQLLTAISYIVQHPEAPLHTVNIIDEAEEKRL VTDLNPSRLSAEAKKLTDWFRQAAEANPDAPAVTAGETTLTYRELHEESNRLAHRLQK QGIGKGSVAALFVKRSCEMAAGILGILKAGAAYLPIDPEYPEDRIAYMLEDSKAGCIV THQALYAEAEKLPNAGSLMCIDGEDGLDAPSDEPEASGGADMPAYIMYTSGTTGKPKG NVTTHANIQRIAKHTNYISISETDTVLSLSNYAFDGFTFDFYGSLLNGARLVIADKDT ILNTEKLTELIVSEGITVMFVTTALFNVLTDAGGEWMKGLRHILFGGERASAAHVRKA LRIMGPGRLIHVYGPTEVTVFATAHTIHDIPESMSAVPIGRPLNETGAYILTETGRLQ PFGAVGELTLTGMGVSNGYLNREDLTKQKFIPNPFKPGERLYRTGDLARWLPDGTIEF AGRIDDQVKIRGHRIELEEIEKQIQAYQGIKEAVAAVSRNESGDAYIDAYLVCSAEID TNGLEVFLSRQLPAYMVPQSFTILEKLPLTPNGKVNKRLLPKAEPKQRTDKDQTPPRN ETEERIARIWAEVLGTESIGIHDDFFALGGHSLKAMTAASRIKKELGTDIPVKLLFEA PTIAGIADFLLHGEEKGMKDLTIMNKDQSDTLFAFPPVLGYGLMYQPLAKQLSGCRIC AFDFIEEDNRIDRYTELINQLQPEGPIKLFGYSAGCTLAFETAKRLEAEGREVERLIM VDSYKKQGVSDLDGRTVESDVQALMKVNRDNEALNNEAVKEGLAKKTNAFYSYFVHTV STGTVNADIDLLTSEPDFAMPPWLASWEEATTGEYRVKKGCGTHAEMLQGDCLERNAA HLLEFLRNEHLKLTTSR" misc_feature 354719..355618 /gene="srfAC" /locus_tag="BAMF_0314" /note="Condensation domain; Region: Condensation; cl09290" /db_xref="CDD:197435" misc_feature 355397..357343 /gene="srfAC" /locus_tag="BAMF_0314" /note="Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020" /db_xref="CDD:31223" misc_feature <356510..357376 /gene="srfAC" /locus_tag="BAMF_0314" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature <357194..357568 /gene="srfAC" /locus_tag="BAMF_0314" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature 357620..357814 /gene="srfAC" /locus_tag="BAMF_0314" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" misc_feature 357854..358501 /gene="srfAC" /locus_tag="BAMF_0314" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature 357875..358501 /gene="srfAC" /locus_tag="BAMF_0314" /note="Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3319" /db_xref="CDD:33128" gene 358553..359284 /gene="srfAD" /locus_tag="BAMF_0315" /db_xref="GeneID:9780208" CDS 358553..359284 /gene="srfAD" /locus_tag="BAMF_0315" /EC_number="3.1.2.-" /function="Predicted thioesterase involved in non-ribosomal peptide biosynthesis" /note="Surfactin synthetase thioesterase subunit; Cold shock protein CSI16;, Thioesterase type II, NRPS/PKS/S-FAS, Thioesterase domain" /codon_start=1 /transl_table=11 /product="nonribosomal surfactin synthetase D" /protein_id="YP_003918911.1" /db_xref="GI:308172206" /db_xref="GeneID:9780208" /translation="MVQLFKSFDTTEKTQLICFPFAGGYSASFRPLHTYLQGECEMLA AEPPGHGTNQMSAVEDFEQLVSLYKQELNLSPDRPFVLFGHSMGGMVAFRLAQKLERE GIYPQAVIISAIQPPHAERKKVSHLDDEKFLAHIIELGGMPQELVENKEVMSFFLPSF RSDYRALESFRPSDSHIIQSPVHIFNGRKDHKCIRDADGWKKWAANPIFHEFSDGHMF ILSETEKVAERIYEIINRSTAGQLL" misc_feature 358571..359257 /gene="srfAD" /locus_tag="BAMF_0315" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature 358592..359242 /gene="srfAD" /locus_tag="BAMF_0315" /note="Thioesterase domain; Region: Thioesterase; pfam00975" /db_xref="CDD:144533" gene 359406..360716 /gene="RBAM_003700" /locus_tag="BAMF_0316" /db_xref="GeneID:9780209" CDS 359406..360716 /gene="RBAM_003700" /locus_tag="BAMF_0316" /function="Aspartate/tyrosine/aromatic aminotransferase" /note="Serine hydroxymethyltransferase; Serine methylase; SHMT;, Aminotransferase, class I/II" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918912.1" /db_xref="GI:308172207" /db_xref="GeneID:9780209" /translation="MNDAAKELNRTLSDENPHVLHMLSDLGKDLFYPKGVLTQSAEAK AKAGKYNATIGIATSQGESMHFSHIQETLSAYNPDDIYDYAPPQGKEPLRQEWLKKMR LENPSLAGKDISTPIVTNALTHGLSIATDLFVNEGDTLLLPDKYWGNYNFIFGVRRKA SIETYPLFQQDGRFNAAGLSELLKKQEEKAIVVLNFPNNPTGYTPGEEEALEIVSVIL EAAEAGKEIVVLVDDAYYNLFYDETAIQESIFSKLAQVHDRVLCVKIDGATKENYAWG FRVGFITYSTKSEKALRVLEEKTKGIIRGTISSAPHPSQTFMLRAMQSPEYEKEKSLK YNIMKKRADKVKAVLAENKHYEDVWTPYPFNSGYFMCVRLKDINAGELRVSLLEKRGI GTISINETDLRIAFSCVEEEHIADLFEEIYQEAKQLQKQAELSG" misc_feature 359610..360674 /gene="RBAM_003700" /locus_tag="BAMF_0316" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(359766..359774,359844..359846,360000..360002, 360108..360110,360204..360206,360210..360215, 360237..360239) /gene="RBAM_003700" /locus_tag="BAMF_0316" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(359775..359777,359874..359876,360087..360089, 360231..360239,360345..360347,360354..360356) /gene="RBAM_003700" /locus_tag="BAMF_0316" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 360213..360215 /gene="RBAM_003700" /locus_tag="BAMF_0316" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(360752..361426) /gene="sfp" /locus_tag="BAMF_0317" /db_xref="GeneID:9779697" CDS complement(360752..361426) /gene="sfp" /locus_tag="BAMF_0317" /EC_number="2.7.8.-" /function="16.5: Explore" /codon_start=1 /transl_table=11 /product="undecaprenyl-phosphate N-acetylgalactosaminyl-1-phosphate transferase" /protein_id="YP_003918913.1" /db_xref="GI:308172208" /db_xref="GeneID:9779697" /translation="MKIYGVYMDRPLSPKEEDRMMAAVSAEKREKCRRFYHKEDAHRT LLGDMLIRTIAGRAYGLNPAAIVFSVQEYGKPYIPALPDLHFNISHSGRWIVCAVDSK PIGIDIEKMKPGTIDIAKRFFSPSEYSDLQAKDPDRQTDYFYHLWSMKESFIKQAGKG LSLPLDSFSVRLEEDGRVSIELPDGHEPCFIRTYDADEEYKLAVCAAHPDFCDGIEMK TYEELL" misc_feature complement(360758..361426) /gene="sfp" /locus_tag="BAMF_0317" /note="Phosphopantetheinyl transferase [Coenzyme metabolism]; Region: Sfp; COG2091" /db_xref="CDD:32274" misc_feature complement(360755..361129) /gene="sfp" /locus_tag="BAMF_0317" /note="4'-phosphopantetheinyl transferase superfamily; Region: ACPS; cl00500" /db_xref="CDD:193842" gene complement(361526..362137) /gene="yczE" /locus_tag="BAMF_0318" /db_xref="GeneID:9780082" CDS complement(361526..362137) /gene="yczE" /locus_tag="BAMF_0318" /function="15.11: Biosynthesis of natural products" /codon_start=1 /transl_table=11 /product="integral inner membrane protein" /protein_id="YP_003918914.1" /db_xref="GI:308172209" /db_xref="GeneID:9780082" /translation="MRWTFYFAGLLILSFGVSLTIKGKALGISPWDAFHYGLFQHFGL SVGQWSIVVGAVIVALTCLFTRTLPKIGAILNMLMMGMFIDFFSFLLPEAHAFSLAAV FFSFGLLLIGCGVGIYVSAGLGAGPRDSLMLLISEKTGWNVQWVRNGIELTILAAAWT MGGPIGAGTIITAVLTGLILRFSLPQSSKLLTYAIYGRAASVH" misc_feature complement(361541..362137) /gene="yczE" /locus_tag="BAMF_0318" /note="Predicted membrane protein [Function unknown]; Region: COG2364" /db_xref="CDD:32511" misc_feature complement(<361661..361834) /gene="yczE" /locus_tag="BAMF_0318" /note="Uncharacterized BCR, YitT family COG1284; Region: DUF161; pfam02588" /db_xref="CDD:190354" gene complement(362254..362997) /gene="tcyC" /locus_tag="BAMF_0319" /db_xref="GeneID:9780572" CDS complement(362254..362997) /gene="tcyC" /locus_tag="BAMF_0319" /EC_number="3.6.3.21" /function="ABC-type sugar transport systems, ATPase components" /note="Phosphate import ATP-binding protein pstB; Phosphate-transporting ATPase; ABC phosphate transporter;, ABC transporter-like, ABC transporter, ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="cystine ABC transporter, ATP-binding protein" /protein_id="YP_003918915.1" /db_xref="GI:308172210" /db_xref="GeneID:9780572" /translation="MLSVKGLNKSFGQNEILKKIDMEIEKGKVIAILGPSGSGKTTLL RCLNALEIPNHGELAFSDFSIDFSKKVKQADILRLRRKSGMVFQAYHLFPHRTALENV MEGPIQVQKRDKEQVRKEAIELLEKVGLKDKMNLYPFQLSGGQQQRVGIARALAIQPE LMLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVI VEQGPPAQIFSAPKEERTQRFLNRILNPL" misc_feature complement(362266..362997) /gene="tcyC" /locus_tag="BAMF_0319" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature complement(362344..362994) /gene="tcyC" /locus_tag="BAMF_0319" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature complement(362875..362898) /gene="tcyC" /locus_tag="BAMF_0319" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature complement(order(362404..362406,362500..362505, 362734..362736,362872..362880,362884..362889)) /gene="tcyC" /locus_tag="BAMF_0319" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature complement(362734..362745) /gene="tcyC" /locus_tag="BAMF_0319" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature complement(362548..362577) /gene="tcyC" /locus_tag="BAMF_0319" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature complement(362500..362517) /gene="tcyC" /locus_tag="BAMF_0319" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature complement(362482..362493) /gene="tcyC" /locus_tag="BAMF_0319" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature complement(362398..362418) /gene="tcyC" /locus_tag="BAMF_0319" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene complement(363010..363714) /gene="tcyB" /locus_tag="BAMF_0320" /db_xref="GeneID:9780262" CDS complement(363010..363714) /gene="tcyB" /locus_tag="BAMF_0320" /function="ABC-type amino acid transport system, permease component" /note="Inner membrane amino-acid ABC transporter permease protein yecS;, Binding-protein-dependent transport systems inner membrane component, Binding-protein-dependent transport system inner membrane component, HEQRo_perm_3TM: amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" /codon_start=1 /transl_table=11 /product="cystine ABC transporter permease" /protein_id="YP_003918916.1" /db_xref="GI:308172211" /db_xref="GeneID:9780262" /translation="MFLSNMPEPVIAAAIPWDLVQQSFWPILSGGIYYSIPLTILSFI FGMIIALITALARMSNMKPLRWVFSVYVSAVRGTPLLVQLFIIFYLFPTFNITLDPFP SAVIAFSLNVGAYASEIIRASISSVPKGQWEAGYTIGMTYRKTLFRVILPQAFRVSIP PLSNTFISLIKDTSLASQILVAELFRKAQEIGAQNLDQILVIYIEAAFIYWIICFLLS IVQLVIERRLDRYVAK" misc_feature complement(363013..363660) /gene="tcyB" /locus_tag="BAMF_0320" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature complement(363058..363621) /gene="tcyB" /locus_tag="BAMF_0320" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(363058..363063,363070..363075, 363082..363087,363091..363096,363103..363108, 363136..363141,363181..363186,363193..363204, 363223..363225,363232..363237,363277..363279, 363328..363330,363337..363342,363352..363354, 363358..363363,363370..363372,363376..363378, 363382..363387,363451..363453,363457..363462, 363469..363498,363502..363513,363541..363543, 363556..363561,363568..363573)) /gene="tcyB" /locus_tag="BAMF_0320" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(363187..363204,363451..363495)) /gene="tcyB" /locus_tag="BAMF_0320" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(363106..363108,363136..363138, 363145..363147,363184..363186,363400..363402, 363451..363453)) /gene="tcyB" /locus_tag="BAMF_0320" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(363256..363258,363268..363273, 363289..363327)) /gene="tcyB" /locus_tag="BAMF_0320" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(363701..364471) /gene="tcyA" /locus_tag="BAMF_0321" /db_xref="GeneID:9780261" CDS complement(363701..364471) /gene="tcyA" /locus_tag="BAMF_0321" /function="ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /note="amino-acid ABC transporter-binding protein HI1080; Flags: Precursor;, Extracellular solute-binding protein, family 3, Bacterial extracellular solute-binding proteins, family 3, 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein" /codon_start=1 /transl_table=11 /product="cystine ABC transporter binding protein" /protein_id="YP_003918917.1" /db_xref="GI:308172212" /db_xref="GeneID:9780261" /translation="MMVSIAVLAACGNSQDSGSKSKDGDLWASVKKKGVLTVGTEGTY EPFTFHDKKTDKLTGYDVEVIQEVAKRLGLKADFKETQWDSMFAGLNAKRFDVVANQV GKTGRENQYDFSDKYTTSNAVVVTKKDSTIAKEADVKGKTAAQSLTSNYNKLAKEAGA KIEGVEGMAQSLQLIQQGRADLTYNDKLAVLNYLKTSGNKNVKIAFEAGQPQQTYFAF RKGSGELVTHVNKALKEMKEDGTLSKIAKKWFGEDVSK" misc_feature complement(363722..364369) /gene="tcyA" /locus_tag="BAMF_0321" /note="Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062" /db_xref="CDD:128376" misc_feature complement(363722..364366) /gene="tcyA" /locus_tag="BAMF_0321" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature complement(order(363914..363916,364022..364024, 364151..364153,364223..364225,364340..364342)) /gene="tcyA" /locus_tag="BAMF_0321" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature complement(order(363935..363937,363953..363955, 363965..363967)) /gene="tcyA" /locus_tag="BAMF_0321" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature complement(363821..363838) /gene="tcyA" /locus_tag="BAMF_0321" /note="hinge residues; other site" /db_xref="CDD:29040" gene complement(364631..365503) /gene="bsdA" /locus_tag="BAMF_0322" /db_xref="GeneID:9780260" CDS complement(364631..365503) /gene="bsdA" /locus_tag="BAMF_0322" /function="Transcriptional regulator" /note="Uncharacterized HTH-type transcriptional regulator ywbI;, LysR, substrate-binding, LysR substrate binding domain" /codon_start=1 /transl_table=11 /product="transcriptional activator" /protein_id="YP_003918918.1" /db_xref="GI:308172213" /db_xref="GeneID:9780260" /translation="MDIRQLRYFVTIAQEQKITTAAKKLHMAQPPLSRQLKQLEEELG VILFDRNKKKQMTLTYEGNVFLKRAKEILHKFEDAIIEVQELKEEAAGPLAVGSTIYC AALMLEKVSQMKEQYPHLTFNIWEDEPVSLLELLESRQIDAAVTTTLIKSDSIESKEL EDIPCVLVLSEHTKRLCGETIKLKDIASLPLILLRTVNGRGVYDQVLHVCEQYGLDLQ VVCECHDSATLLSLVSSGFGATILPLTMIPVHMRSHVKTVAIEDNPFVMTPAVIWRKD SYLPKPVRQFLQLF" misc_feature complement(364634..365503) /gene="bsdA" /locus_tag="BAMF_0322" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(365318..365497) /gene="bsdA" /locus_tag="BAMF_0322" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(364634..365224) /gene="bsdA" /locus_tag="BAMF_0322" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature complement(order(364799..364804,364808..364813, 364829..364846,365126..365146,365150..365152, 365162..365164,365171..365176,365180..365185)) /gene="bsdA" /locus_tag="BAMF_0322" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 365589..366209 /gene="bsdB" /locus_tag="BAMF_0323" /db_xref="GeneID:9778456" CDS 365589..366209 /gene="bsdB" /locus_tag="BAMF_0323" /EC_number="4.1.1.-" /function="3-polyprenyl-4-hydroxybenzoate decarboxylase" /note="Phenylacrylic acid decarboxylase; PAD;, Flavoprotein, Flavoprotein, ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases" /codon_start=1 /transl_table=11 /product="phenolic acid decarboxylase" /protein_id="YP_003918919.1" /db_xref="GI:308172214" /db_xref="GeneID:9778456" /translation="MVLTPYFKRKGGFNMKLVIGMTGATGAIFGIRLLEYLKAAEIET HLVVSPWANVTITHETDYTLKDVEKLASYTYSHKDQAAAISSGSFETDGMIIAPCSMK SLASIRTGMADNLLTRAADVILKERKKLVLLTRETPLSQIHLENMLALTKMGSVILPP MPAFYNKPADMDELIDHIVFRTLDQFGIRLPEAKRWYGIEKQKGGI" misc_feature 365628..366191 /gene="bsdB" /locus_tag="BAMF_0323" /note="aromatic acid decarboxylase; Validated; Region: PRK05920" /db_xref="CDD:180312" misc_feature 365631..365993 /gene="bsdB" /locus_tag="BAMF_0323" /note="Flavoprotein; Region: Flavoprotein; cl08021" /db_xref="CDD:195652" gene 366212..367633 /gene="bsdC" /locus_tag="BAMF_0324" /db_xref="GeneID:9778457" CDS 366212..367633 /gene="bsdC" /locus_tag="BAMF_0324" /EC_number="4.1.1.-" /function="3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases" /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Polyprenyl p-hydroxybenzoate decarboxylase;, Carboxylyase-related, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, TIGR00148: UbiD family decarboxylases" /codon_start=1 /transl_table=11 /product="phenolic acid decarboxylase" /protein_id="YP_003918920.1" /db_xref="GI:308172215" /db_xref="GeneID:9778457" /translation="MAYQDFREFLAALEKEGQLLTVNEEVKPEPDLGAAARAASNLGD KSPALLFNNIYGQHHAQVALNVIGSWPNHAMMLGMPKDTPVKEQFFEFAKRYDSFPVS VKREETAPFHENEITEDINLFDILPLFRINQGDGGYYLDKACVISRDLEDPDNFGKQN VGIYRMQVKGKDRLGIQPVPQHDIAIHLRQAEERGVNLPVTIALGCEPVITTAASTPL LYDQSEYEMAGAIQGEPYRIVKSNLSDLDIPWGAEVVLEGEILAGEREYEGPFGEFTG HYSGGRSMPVIKIKRVYHRNNPIFEHLYLGMPWTECDYMIGINTCVPLYQQLKEAYPN EIVAVNAMYTHGLIAIISTKTRYGGFAKAVGMRALTTPHGLGYCKMVIVVDEDVDPFN LPQVMWALSTKMHPKHDAVIIPDLSVLPLDPGSDPAGMTHKMILDATTPAAPETRGHY SQPLDSPLTTKEWEQKLMDLMNQ" misc_feature 366227..367534 /gene="bsdC" /locus_tag="BAMF_0324" /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Region: UbiD; cl00311" /db_xref="CDD:185894" gene 367651..367809 /gene="bsdD" /locus_tag="BAMF_0325" /db_xref="GeneID:9778458" CDS 367651..367809 /gene="bsdD" /locus_tag="BAMF_0325" /codon_start=1 /transl_table=11 /product="nonoxidative vanillate/4-hydroxybenzoate decarboxylase subunit" /protein_id="YP_003918921.1" /db_xref="GI:308172216" /db_xref="GeneID:9778458" /translation="MKTCPRCESKKGETVSQSPVKGAWEIYQCQTCFFTWRSCEPESI TMHLYCNP" gene 367806..368174 /gene="yclD" /locus_tag="BAMF_0326" /db_xref="GeneID:9778459" CDS 367806..368174 /gene="yclD" /locus_tag="BAMF_0326" /codon_start=1 /transl_table=11 /product="phenolic acid decarboxylase" /protein_id="YP_003918922.1" /db_xref="GI:308172217" /db_xref="GeneID:9778459" /translation="MTKQGRPHAAMISAGEILAVSSTNLRIALWKNTTTVKSLLHSGQ ALFIAWHGGAAYYVTLECEALPPLKEAKYERERFSCRVISVKEDRAKYADLTSGPAIQ LHEPESVLKRWSETLEELKQ" gene complement(368211..369689) /gene="dtpT" /locus_tag="BAMF_0327" /db_xref="GeneID:9780545" CDS complement(368211..369689) /gene="dtpT" /locus_tag="BAMF_0327" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="di-tripeptide-proton ABC symporter" /protein_id="YP_003918923.1" /db_xref="GI:308172218" /db_xref="GeneID:9780545" /translation="MASIEKEAITETVPQRGFFGHPRGLFTLFFTEFWERFSYYGMRA ILLYYLYTEVAHGGLGFDKSTAVAIMSIYGSLVYMSSVIGGWLADRVFGTANTVFYGG ILIMFGHIALAFPGSTAAFFLSMALIIIGTGLLKPNVSSVVGDLYTKEDERRDSGFSI FYMGINLGGLVAPLIVGTLGQKYNYHLGFGCAAAGMFLGLIVFALTRKKYLGKAGSNV PNPISKSSVIGTGIGVVIAAAVIFVLIQTGWLTIQRVIDVVSVLGIVIPVIYFIVMFT SKKATRTEKSRLAAYIPLFIAAAMFWAIQEQGATILALYADQRTRLSFAGMHLESSWF QSLNPLFIVIFAPVFAWFWMKLGKRQPSTPIKFAIGIILAGLSFLVMVLPVMGGSGEL VSPLWLVLSFLLVVLGELCLSPVGLSVTTKLAPAAFSAQTMSMWFLTNACGQALNAKV VGLFDKISEAAYFGSIGLISIILGIILVLLSPVIKRAMKGVQ" misc_feature complement(368214..369665) /gene="dtpT" /locus_tag="BAMF_0327" /note="Dipeptide/tripeptide permease [Amino acid transport and metabolism]; Region: PTR2; COG3104" /db_xref="CDD:32918" misc_feature complement(<369054..369617) /gene="dtpT" /locus_tag="BAMF_0327" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(369183..369185,369201..369206, 369213..369218,369258..369260,369267..369272, 369279..369284,369291..369296,369435..369440, 369444..369449,369459..369461,369468..369473, 369480..369482,369549..369554,369558..369566, 369573..369575)) /gene="dtpT" /locus_tag="BAMF_0327" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature complement(368367..369407) /gene="dtpT" /locus_tag="BAMF_0327" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cl11420" /db_xref="CDD:196224" gene 369969..371714 /gene="yclG" /locus_tag="BAMF_0328" /db_xref="GeneID:9778713" CDS 369969..371714 /gene="yclG" /locus_tag="BAMF_0328" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="uronase" /protein_id="YP_003918924.1" /db_xref="GI:308172219" /db_xref="GeneID:9778713" /translation="MPNRILDITDCGVAADGKTDVTSAINQCLAKAVSEGCHTVFFPS GTYKINGTLGGDSGQPFRNAGINVPSHLSIVMDPECTIKVTPNSSWGYSAFYIGRREN VTITGGRIIGERDEHKYINVPLRSTHEWGFGICIEGSSNVLIEDVEISDFTGDGIIVS PLGLKTNSDYETSEHITIRRCDIRQSRRNNISITGCNTVTVEECVIEDAGKGNGTAPK FGIDIESYGEGDVDYEEALHITIRNNFFYGNTASSVTNFNGYNVLIEGNHSDNTISYG YGAHTVISGNVLFWSNGGSRTGIAGQGVSQGQDSSNAVISNNLITGFSTGIDVRGKSV LVTHNKINQFENTGISVYRAEDVTVDGNVIENGRSETGRSAGMRATLSENAVFMNNIL NQITDGINISAGNITVKQNVLKSFSRGIWVTGGNALIEGNTLIPNAFQGAAESYAVSV TNDAKAVIKGNLFKSYKNYPIFSSTSSGTSVIGNRFESSPLIVTLYLNSGTHEVIDNT ITIKRTAGSPIGIYLNGTSNSLVSGNTINNLSAASASAIQTSSSASTKIIGNRIIKGV IVKHPTDTEIGNIVI" misc_feature 369981..>370559 /gene="yclG" /locus_tag="BAMF_0328" /note="Pectate lyase superfamily protein; Region: Pectate_lyase_3; pfam12708" /db_xref="CDD:193184" misc_feature <370869..>371426 /gene="yclG" /locus_tag="BAMF_0328" /note="Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]; Region: NosD; COG3420" /db_xref="CDD:33226" gene complement(371848..372078) /gene="yczF" /locus_tag="BAMF_0329" /db_xref="GeneID:9780546" CDS complement(371848..372078) /gene="yczF" /locus_tag="BAMF_0329" /note="Uncharacterized protein yczF; Flags: Precursor" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918925.1" /db_xref="GI:308172220" /db_xref="GeneID:9780546" /translation="MIPHENIGDFHFLLTSCLMISVGVDMLQGFSLYGAVQNNLSAFK LMTFSEWLMLFFFALFLIKEMLALYKTGKKDA" gene 372191..373831 /gene="gerKA" /locus_tag="BAMF_0330" /db_xref="GeneID:9780573" CDS 372191..373831 /gene="gerKA" /locus_tag="BAMF_0330" /note="Spore germination protein KA;, Bacillus/Clostridium GerA spore germination protein, Bacillus/Clostridium GerA spore germination protein" /codon_start=1 /transl_table=11 /product="spore germination protein KA" /protein_id="YP_003918926.1" /db_xref="GI:308172221" /db_xref="GeneID:9780573" /translation="MPPFFKQKKQKKADQNDRGNEDRKEPENKSDKEREEPISLSLEK NMKKLSARFGNSADVVIRRLKIGKEELPAAIVYIAGLVDEQLVSQSLLEDLIDIPSVQ PEQAVCLIYEKTLAIGGVKEEEKWKSLFAGLVAGSTLIFVDGADKALIASTEGGEHRS IQEPNTQVSFRGPRQGFTESLQTNISMIRRYVKTPDVWVEKMEIGHETNTDVALMYIN GICEKKLIKEVRKRLKHIDIDSILESGYIEQLIEDEPFSVFPTVYHTERPDVVAGNLL EGRFAIIVDGTPFVLLAPALFIQFFQSVEDYYSRFDIATSIRLLRVLIFFISLVAPGI YVAATTFHQEMIPTQLLIDIAAQRETVPFPAVIEALTMEVAFEILREAGVRLPRVVGS AVSTVGALVIGQAAVQAGIVSPAMVIVVALTAIASFATPAFDMAISARLIRFVFILSA AVMGFYGLILGIIMMFVHLCSLRSFGFPYMSPLAPLSPGGLKDSLLRAPLWADEKRPG LLVQKNNRRQGEHQRPKPETSRGMVNKDIEEGDGNEKT" misc_feature 372323..373720 /gene="gerKA" /locus_tag="BAMF_0330" /note="Bacillus/Clostridium GerA spore germination protein; Region: GerA; pfam03323" /db_xref="CDD:190601" gene 373818..375044 /gene="gerKC" /locus_tag="BAMF_0331" /db_xref="GeneID:9778882" CDS 373818..375044 /gene="gerKC" /locus_tag="BAMF_0331" /note="Spore germination protein KC; Flags: Precursor;, Spore germination GerAC, Spore germination B3/ GerAC like, C-terminal, spore_ger_x_C: germination protein, Ger(x)C family" /codon_start=1 /transl_table=11 /product="spore germination protein KC" /protein_id="YP_003918927.1" /db_xref="GI:308172222" /db_xref="GeneID:9778882" /translation="MKRRKWILLLCTMVSLMFVSGCWDKRELTDLAVISAIGIDRTES GKYVLHFQIINPGNVAGGLQGGGAGDRPPVSVYSVSGDNMTEALRKGSMKVSRRLYFA HTNLVVFSEKLAKEEGLSFILDNLDRDTEFRTTATAVIAHNCKAEDIIKVLTPIDKIP SNKVNKTLSFTQEQYGRVIKTSLQDVLIDLASPTGSPFIPGYEMHGDDKVGPTMENTQ TTEPKALLSADGLAVFKKDGRLDYWIEDDDSVGAVWLLNKIKHTFINADWKNVKHAIS LQVTRQNTKVTATFPGGKPHIHVHAEVEGLVDAVRYPFHLSDPKVLMTMQKALSAQLD KDITKSIEDIKTHKNDFIGFGDLIYRQHPHKWKKLKGKWDEEIFPNLPVDVKTEVIIR RTGLRNNPLSDELQHD" misc_feature 373830..375011 /gene="gerKC" /locus_tag="BAMF_0331" /note="Spore germination B3/ GerAC like, C-terminal; Region: Spore_GerAC; cl05194" /db_xref="CDD:195053" gene 375069..376187 /gene="gerKB" /locus_tag="BAMF_0332" /db_xref="GeneID:9778886" CDS 375069..376187 /gene="gerKB" /locus_tag="BAMF_0332" /function="Amino acid transporters" /note="Spore germination protein KB;, Spore germination GerAB, Spore germination protein, 2A0309: spore germination protein (amino acid permease)" /codon_start=1 /transl_table=11 /product="spore germination protein KB" /protein_id="YP_003918928.1" /db_xref="GI:308172223" /db_xref="GeneID:9778886" /translation="MENAKIGTRQLFIMIILFELGSSLLIPPGTMAGRDAWLSVLLGC VVGLGLFYVYQALYQYFPESSPRDYMNELIGRHLSWVVSLLYILYFAYIAARVLRDFG EMLVTFAYQDTPLVIVNAMLMIAAIFAVRKGIEVIARAGELLFGIMYFLTAIGLILLI SSGTINLRFLQPVLAEGMGTVIYSVFKQTMFIPFGELIVFVMIFPYLKDRKKVKKTGF LAIIISGLFLAMSVAINICVLDVNLMLRSQFPLLSTIQTIKVEEFLDRLDVFFMLVLV IGGFFKVSLFTYSVVVGVSTLFKEKNPSQLALPVGLGVLILSISIASNFSEHMNEGLK IVPIYIHLPFQVLFPVLLLIIAVIKKKVKGSVYTVSKK" misc_feature 375081..376046 /gene="gerKB" /locus_tag="BAMF_0332" /note="Transmembrane amino acid transporter protein; Region: Aa_trans; cl00524" /db_xref="CDD:193853" gene 376359..377681 /gene="yxeK" /locus_tag="BAMF_0333" /db_xref="GeneID:9778884" CDS 376359..377681 /gene="yxeK" /locus_tag="BAMF_0333" /EC_number="1.14.14.5" /function="Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases" /note="Dibenzothiophene desulfurization enzyme A;, Luciferase-like" /codon_start=1 /transl_table=11 /product="xenobiotic compound monooxygenase" /protein_id="YP_003918929.1" /db_xref="GI:308172224" /db_xref="GeneID:9778884" /translation="MTKKKEIKLGVFLAGTGHHVASWRHPEAPADASMNLDYFKELAK TAERGKLDMLFLADSLSIDSKSHPNVLTRFEPFTLLSALAQVTSHIGLTATASTTYSE PFHIARQIASLDHLSNGRAGWNVVTSSIESTALNFSGEKHLEHHLRYQRAEEFVEVVK GLWDSWEEDAFIRDKESGTFFDKDKMHELNHKGTYFSVRGPLNAARTPQGRPVIIQAG SSGDGKALAAKTAEVIFTAQNHLESAQEFYHSIKEQAASFGRDPEKIAIMPGIFPVIA DTEEEAQAKYEELQDLIIPSVGLNILQNYLGGVDLSAYPLDGPLPELDAEASNAVKSR FKLVQEMAKRDNMTIRELYKYVAGSRGHHIFVGTPEQLADKMEEWVDKQACDGFNIMP PLLPEGLTLFVDKVIPILQERGVFRKEYEGTTLREHFGLEKPANRYAG" misc_feature 376377..377606 /gene="yxeK" /locus_tag="BAMF_0333" /note="nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2; Region: Nitrilotriacetate_monoxgenase; cd01095" /db_xref="CDD:73245" misc_feature 376383..377642 /gene="yxeK" /locus_tag="BAMF_0333" /note="FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; Region: FMN_nitrolo; TIGR03860" /db_xref="CDD:163572" misc_feature order(376392..376394,376404..376406,376575..376577, 376734..376736,376800..376802,377019..377024) /gene="yxeK" /locus_tag="BAMF_0333" /note="active site" /db_xref="CDD:73245" misc_feature 376641..376646 /gene="yxeK" /locus_tag="BAMF_0333" /note="non-prolyl cis peptide bond; other site" /db_xref="CDD:73245" gene 377694..378185 /gene="yxeL" /locus_tag="BAMF_0334" /db_xref="GeneID:9781875" CDS 377694..378185 /gene="yxeL" /locus_tag="BAMF_0334" /function="Histone acetyltransferase HPA2 and related acetyltransferases" /note="Full=Uncharacterized N-acetyltransferase, GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918930.1" /db_xref="GI:308172225" /db_xref="GeneID:9781875" /translation="MSRQYRLATERDADELLSLTLRAYEPIRKLGINFAAATADKELV LNNIQKNACYVLEEDGRILATISLRMPWGPNPGPYGVPHIWWFAVDPDTGKKGTGSEM LEWLENTVLRDTLKAPFVSLGTADKHPWLIGMYERKGYVRAGEKDLGKGHITIYLKKQ LQN" misc_feature 377859..378116 /gene="yxeL" /locus_tag="BAMF_0334" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene 378214..379005 /gene="yxeM" /locus_tag="BAMF_0335" /db_xref="GeneID:9781876" CDS 378214..379005 /gene="yxeM" /locus_tag="BAMF_0335" /function="ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /note="Membrane-bound lytic murein transglycosylase F; Murein lyase F; Flags: Precursor;, Extracellular solute-binding protein, family 3, Bacterial extracellular solute-binding proteins, family 3, 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter binding protein" /protein_id="YP_003918931.1" /db_xref="GI:308172226" /db_xref="GeneID:9781876" /translation="MKKKTWALLLFAALLAVLSACGNGKESEDGGNVLHVGATGQSYP FAYKENGKLTGFDVDVMEAVAKKINMKLDWKLLEFSGLMGELQTGKLDTISNQVAVTG ERKKTYNFTEPYSYAGTQIVVKNDNKDIKSVNDLKGKTVAAVLGSNHAKNLESKDPDK KINIKTYETQEGTLKDVAYGRVDAYVNSRSLLIAQIKKTGLPLKLAGDPIVYEKVAFP FAKDAAHDKIRKKVNKAIEELQKDGTLKKLSEKYFKEDITTEEKH" misc_feature 378313..378978 /gene="yxeM" /locus_tag="BAMF_0335" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature 378313..378972 /gene="yxeM" /locus_tag="BAMF_0335" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(378337..378339,378448..378450,378523..378525, 378655..378657,378775..378777) /gene="yxeM" /locus_tag="BAMF_0335" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(378724..378726,378736..378738,378754..378756) /gene="yxeM" /locus_tag="BAMF_0335" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 378850..378867 /gene="yxeM" /locus_tag="BAMF_0335" /note="hinge residues; other site" /db_xref="CDD:29040" gene 379052..379702 /gene="yxeN" /locus_tag="BAMF_0336" /db_xref="GeneID:9781877" CDS 379052..379702 /gene="yxeN" /locus_tag="BAMF_0336" /function="ABC-type amino acid transport system, permease component" /note="Nopaline transport system permease protein nocM;, Binding-protein-dependent transport systems inner membrane component, Binding-protein-dependent transport system inner membrane component, HEQRo_perm_3TM: amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter permease" /protein_id="YP_003918932.1" /db_xref="GI:308172227" /db_xref="GeneID:9781877" /translation="MFSAFPALIEALPITLVMAVAAMVFAVIGGLILALITKNRIPVL HQLSKVYISFFRGVPTLVQLFLIYYGLPQLFPGMSKMTALTAAIIGLSLKNAAYLAEI FRAALNSVDEGQLEACLSVGMTKSQAYRRIIFPQAIRNALPATGNTFIGLLKETSLAF TLGVMEMFAQGKMYASGNLKYFETYLAVAIMYWILTIIYSVLQDLLERAISKPYRT" misc_feature 379085..379654 /gene="yxeN" /locus_tag="BAMF_0336" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(379133..379138,379145..379150,379163..379165, 379193..379204,379208..379237,379244..379249, 379253..379255,379328..379333,379337..379339, 379343..379345,379352..379357,379361..379363, 379373..379378,379385..379387,379436..379438, 379478..379483,379490..379492,379511..379522, 379529..379534,379571..379576,379604..379609, 379616..379621,379625..379630,379637..379642, 379649..379654) /gene="yxeN" /locus_tag="BAMF_0336" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(379211..379255,379511..379528) /gene="yxeN" /locus_tag="BAMF_0336" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(379253..379255,379313..379315,379529..379531, 379565..379567,379574..379576,379604..379606) /gene="yxeN" /locus_tag="BAMF_0336" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(379388..379426,379442..379447,379457..379459) /gene="yxeN" /locus_tag="BAMF_0336" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 379716..380465 /gene="yxeO" /locus_tag="BAMF_0337" /db_xref="GeneID:9781878" CDS 379716..380465 /gene="yxeO" /locus_tag="BAMF_0337" /EC_number="3.6.3.21" /function="ABC-type sugar transport systems, ATPase components" /note="Phosphate import ATP-binding protein pstB; Phosphate-transporting ATPase; ABC phosphate transporter;, ABC transporter-like, ABC transporter, ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter ATP-binding protein" /protein_id="YP_003918933.1" /db_xref="GI:308172228" /db_xref="GeneID:9781878" /translation="MIQVRHIRKAFKDLTVLDGIDLEIKSGEVTAIIGPSGSGKSTLL RCLNLLERPDDGIIEIGDAKLNAASYSRKDVHKLRQQTAMVFQNYNLFKNKTALQNVT EALITAQKKPKKEAEQIGMDLLRQVGLEHKADSYPITMSGGQQQRIGIARALAVDPHA ILLDEPTSALDPELVAGVLQVIKSIAEKQTTMVIVTHEMAFAREVADQVIFMADGRII EQGTPEELFDNPQNERTKKFIKQVGEPAELV" misc_feature 379716..380441 /gene="yxeO" /locus_tag="BAMF_0337" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature 379719..380366 /gene="yxeO" /locus_tag="BAMF_0337" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 379815..379838 /gene="yxeO" /locus_tag="BAMF_0337" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(379824..379829,379833..379841,379974..379976, 380205..380210,380304..380306) /gene="yxeO" /locus_tag="BAMF_0337" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 379965..379976 /gene="yxeO" /locus_tag="BAMF_0337" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 380133..380162 /gene="yxeO" /locus_tag="BAMF_0337" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 380193..380210 /gene="yxeO" /locus_tag="BAMF_0337" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 380217..380228 /gene="yxeO" /locus_tag="BAMF_0337" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 380292..380312 /gene="yxeO" /locus_tag="BAMF_0337" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene 380483..381634 /gene="yxeP" /locus_tag="BAMF_0338" /db_xref="GeneID:9781879" CDS 380483..381634 /gene="yxeP" /locus_tag="BAMF_0338" /EC_number="3.5.1.14" /function="Metal- dependentamidase/aminoacylase/carboxypeptidase" /note="IAA-amino acid hydrolase ILR1-like 4; Flags: Precursor;, Peptidase M20D, amidohydrolase, Peptidase family M20/M25/M40, amidohydrolases: amidohydrolase" /codon_start=1 /transl_table=11 /product="N-acyl-L-amino acid amidohydrolase" /protein_id="YP_003918934.1" /db_xref="GI:308172229" /db_xref="GeneID:9781879" /translation="MANETYESLNKRLINIRRDLHEYPELSGEEYETTGKIRRWLEEE GISVLDVPKLQTGVIAEIKGDKSGPVIAVRADIDALPIEEKTNLPFASRNSGVMHACG HDFHTASILGTAFLLNDRKHELKGTVRFIFQPAEEIAAGARQVIEAGALEGVSAIFGM HNKPDLPVGTVGLKEGPLMASVDRFEMTVKGKGGHAGIPDNSIDPIQAAGQIIGGLQS VVSRNISSLHNAVVSITRVQGGSSWNVIPDRVEMEGTVRTFQKEAREAVPKHMKRVAE GIAAGFGAEAEFRWFPYLPSVMNDARFIQTAEQTAESLGLQTVRAEQSPGGEDFALYQ EKIPGFFVWMGTNGTEEWHHPAFTLDEKALPAAAEFFARLAVNVLEQTE" misc_feature 380483..381622 /gene="yxeP" /locus_tag="BAMF_0338" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature 380504..381625 /gene="yxeP" /locus_tag="BAMF_0338" /note="YtnL, YjiB and HipO2; Region: M20_Acy1_YxeP_like; cd05669" /db_xref="CDD:193545" misc_feature order(380783..380785,380789..380791,380891..380893, 380963..380965,381539..381541) /gene="yxeP" /locus_tag="BAMF_0338" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193545" misc_feature order(381032..381034,381092..381094,381098..381103, 381110..381115,381119..381121,381215..381217, 381221..381223,381239..381247) /gene="yxeP" /locus_tag="BAMF_0338" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:193545" gene 381631..382977 /gene="yxeQ" /locus_tag="BAMF_0339" /db_xref="GeneID:9781880" CDS 381631..382977 /gene="yxeQ" /locus_tag="BAMF_0339" /function="Uncharacterized protein involved in propionate catabolism" /note="Immune-responsive gene 1 protein homolog;, MmgE/PrpD, MmgE/PrpD family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918935.1" /db_xref="GI:308172230" /db_xref="GeneID:9781880" /translation="MNTENLTAGLAQAVMSSVPETSAEAMKEARKGLLDFTAAAFAGR RDKGIEKLIKLAEEEGGAPIAPLIGRKQKTTPSQSALINGFIAHALDFDDVHSDVRGH PSAVILPALIAAASSGRIDKSRFLGAYVTGIEVMARLGESSGRSHYEKGWHNTGTLGA IAAACAVGFAENLNHHQLQKAIGFAAARSGGMRVQFGTEMKPLHAGLAAQAGLFAVKL AQAGFGGSAHALDGEKGFFGLYGDLERAETLLLNGWGKPWRITSPGLWFKVYPFCSAA HHAADAILKLKAEHGLTFSQTERVDVIYPPGGDAALTERRPKTGEAGRFSVEYVISLA LHGKDLSAEHFTSEPIPEFLQKGFARIHRGYDDQIQPADNAVPKGRFTIVRVTAAGNH VYEARIDCPKGAPGNGLSEKDIEDKLRLALPGEEKRAAELIKAAGQPNIERYLQLI" misc_feature 381676..382971 /gene="yxeQ" /locus_tag="BAMF_0339" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene complement(383081..383764) /gene="yclH" /locus_tag="BAMF_0340" /db_xref="GeneID:9781881" CDS complement(383081..383764) /gene="yclH" /locus_tag="BAMF_0340" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="ABC transporter ATPase" /protein_id="YP_003918936.1" /db_xref="GI:308172231" /db_xref="GeneID:9781881" /translation="MSLLTFQQTGYWYQDKSQPLFQDITISFEKGKFYTIVGASGTGK TTFLSLAGGLDTPKEGSILYNGEDISKIGLTKFRNQYVSIVFQSYNLIPYMTALQNIT TAMEITGSKEKNKDAFALSMLERVGITEQQARQRVLTLSGGQQQRVSIARAFCCDTDL ICADEPTGNLDEDTSKEIVRLFQDLAHKESKCVIMVTHDEQISKVSDINIRLSRGSFT VKENGTAVS" misc_feature complement(383099..383734) /gene="yclH" /locus_tag="BAMF_0340" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature complement(383120..383725) /gene="yclH" /locus_tag="BAMF_0340" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature complement(383630..383653) /gene="yclH" /locus_tag="BAMF_0340" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature complement(order(383171..383173,383270..383275, 383504..383506,383627..383635,383639..383644)) /gene="yclH" /locus_tag="BAMF_0340" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature complement(383504..383515) /gene="yclH" /locus_tag="BAMF_0340" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature complement(383318..383347) /gene="yclH" /locus_tag="BAMF_0340" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature complement(383270..383287) /gene="yclH" /locus_tag="BAMF_0340" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature complement(383252..383263) /gene="yclH" /locus_tag="BAMF_0340" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature complement(383165..383185) /gene="yclH" /locus_tag="BAMF_0340" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene complement(383779..385215) /gene="yclI" /locus_tag="BAMF_0341" /db_xref="GeneID:9780547" CDS complement(383779..385215) /gene="yclI" /locus_tag="BAMF_0341" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="YP_003918937.1" /db_xref="GI:308172232" /db_xref="GeneID:9780547" /translation="MNFIKRAFWSMKAKKGKTLLQLIVFSVICIFVLSGLTIQSAAKK SSELARQQLGGSVTLQVDRQKQMAQQQKDGEKRTFESTPISVSDAKKLTSLQHVKNYN FLTTASANAESFDAIESSDASADNNSGGSRFQGGGRQMMSADISIEGVLSTALLDDFT DGSSKITDGRAITKTDADAKVAVINKTLADQNKLKVGGSITVSSASDDSVKTKLKIVG IYKTTSSGDDQAQHFSFLNPDNKIYTPYTAAAALKGSDNKNKISSAVYYMDDAKYIDS FVAAAKKTSIDYKTYTLTTNDQVYQQMVGPIENVASFSKNVVYLVSIAGAVILGLIVM MSIRERKYEMGVLMAIGEKRWKLIGQFLTEILAVAVIAIGIASVTGSLVANQLGNQLL SQQVSSADDSQQQASGWGGGEMPRGGGMFGRHSSSTDVISTMQVNVSLNDLLILGGIG IAIAVIATLLPSVSVMRLHPKTILTKQE" misc_feature complement(384307..>384792) /gene="yclI" /locus_tag="BAMF_0341" /note="MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704" /db_xref="CDD:193180" misc_feature complement(<384124..384267) /gene="yclI" /locus_tag="BAMF_0341" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 385428..386111 /gene="yclJ" /locus_tag="BAMF_0342" /db_xref="GeneID:9780548" CDS 385428..386111 /gene="yclJ" /locus_tag="BAMF_0342" /function="16.10: Respire16.3: Control" /codon_start=1 /transl_table=11 /product="two-component response regulator" /protein_id="YP_003918938.1" /db_xref="GI:308172233" /db_xref="GeneID:9780548" /translation="MKILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEED WDLVILDIMLPSMDGVTICRKIRETSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPF SPLTLVARIKAVIRRYRATGQAVKSDDLIETACFSINKKTREVFLHGKSVENLTPKEF DLLFYLVQNPRQVFSREQLLEQVWGYQFYGDERTVDVHIKRLRKKLSSDEKPFLYTVW GVGYKFDED" misc_feature 385428..386108 /gene="yclJ" /locus_tag="BAMF_0342" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 385437..385772 /gene="yclJ" /locus_tag="BAMF_0342" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(385446..385451,385578..385580,385602..385604, 385659..385661,385716..385718,385725..385730) /gene="yclJ" /locus_tag="BAMF_0342" /note="active site" /db_xref="CDD:29071" misc_feature 385578..385580 /gene="yclJ" /locus_tag="BAMF_0342" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(385587..385592,385596..385604) /gene="yclJ" /locus_tag="BAMF_0342" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 385725..385733 /gene="yclJ" /locus_tag="BAMF_0342" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 385833..386099 /gene="yclJ" /locus_tag="BAMF_0342" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(385893..385895,385950..385955,386007..386009, 386016..386018,386040..386045,386073..386075, 386088..386090) /gene="yclJ" /locus_tag="BAMF_0342" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 386101..387525 /gene="yclK" /locus_tag="BAMF_0343" /db_xref="GeneID:9780549" CDS 386101..387525 /gene="yclK" /locus_tag="BAMF_0343" /function="16.10: Respire16.12: Sense16.3: Control" /codon_start=1 /transl_table=11 /product="two-component sensor histidine kinase" /protein_id="YP_003918939.1" /db_xref="GI:308172234" /db_xref="GeneID:9780549" /translation="MRIKYLYQLLLSHVSILILAFFIIISLFSHFVKDFAYQNKVDEL SSYAQQITSELNGRDLDLRRLYPYQDMLKTRETRFIIFDEHQRPYFFPDDMPPREKLK NKEWHMLKQGKTVQIRAEMNRFNTEGLEVSLVAKPLFINDQFKGAVLLVSPVRGVEQM ISQVNRYMFYAIISTLIITILLSWLLSKLHVKRIQTLRDATGKVASGDYDISLKNSGG DEIGMLASDFNTMAHNLKQSREQIDRLEKRRRQFIADVSHELRTPLTTINGLVEGLNS NTIPEKDKEKCFSLISEETKRMLRLVKENLDYEKIRSQQIKLDKLSLPLIEVFEIIKE HLNQQAEEKQNRLRIQVEAGVKVFADYDRLIQILVNITKNSIQFTQNGDITLRGYEGY KETIIEIEDTGIGISKEEIEHIWERFYKADVSRTNTAYGEYGLGLSIVKQLVELHKGT IDINSEKGQGTTFTIRLPLNTKNE" misc_feature 386671..386811 /gene="yclK" /locus_tag="BAMF_0343" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cd06225" /db_xref="CDD:100122" misc_feature order(386671..386673,386680..386685,386689..386694, 386701..386706,386710..386712,386758..386763, 386767..386772,386779..386784,386788..386793, 386800..386805) /gene="yclK" /locus_tag="BAMF_0343" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100122" misc_feature 386836..387030 /gene="yclK" /locus_tag="BAMF_0343" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(386854..386856,386866..386868,386878..386880, 386887..386889,386899..386901,386908..386910, 386959..386961,386971..386973,386980..386982, 386992..386994,387001..387003,387013..387015) /gene="yclK" /locus_tag="BAMF_0343" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 386872..386874 /gene="yclK" /locus_tag="BAMF_0343" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 387190..387501 /gene="yclK" /locus_tag="BAMF_0343" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(387208..387210,387220..387222,387229..387231, 387295..387297,387301..387303,387307..387309, 387313..387318,387400..387411,387457..387459, 387463..387465,387478..387483,387487..387489) /gene="yclK" /locus_tag="BAMF_0343" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 387220..387222 /gene="yclK" /locus_tag="BAMF_0343" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(387307..387309,387313..387315,387400..387402, 387406..387408) /gene="yclK" /locus_tag="BAMF_0343" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 387686..388834 /gene="rapC" /locus_tag="BAMF_0344" /db_xref="GeneID:9780550" CDS 387686..388834 /gene="rapC" /locus_tag="BAMF_0344" /EC_number="3.1.-.-" /function="FOG: TPR repeat" /note="Response regulator aspartate phosphatase J;, Tetratricopeptide-like helical" /codon_start=1 /transl_table=11 /product="response regulator aspartate phosphatase" /protein_id="YP_003918940.1" /db_xref="GI:308172235" /db_xref="GeneID:9780550" /translation="MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHM EPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQPTLSEILDNIDNSQAGLKGLLDY YVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQK AQLVGRALYNLGLCYYNQNRIDEAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKL GKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEKISACFRYLEDKNLY ADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI" misc_feature 388094..>388621 /gene="rapC" /locus_tag="BAMF_0344" /note="type IV pilus biogenesis/stability protein PilW; Region: type_IV_pilW; TIGR02521" /db_xref="CDD:131573" misc_feature 388355..388438 /gene="rapC" /locus_tag="BAMF_0344" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cl02429" /db_xref="CDD:194311" gene 388818..388937 /gene="phrC" /locus_tag="BAMF_0345" /db_xref="GeneID:9779630" CDS 388818..388937 /gene="phrC" /locus_tag="BAMF_0345" /codon_start=1 /transl_table=11 /product="inhibitory peptide of RapC" /protein_id="YP_003918941.1" /db_xref="GI:308172236" /db_xref="GeneID:9779630" /translation="MKLKSKWFVICLAAAAIFTAAGVSQTDQAEFHVAERGMT" misc_feature 388824..388934 /gene="phrC" /locus_tag="BAMF_0345" /note="Rap-phr extracellular signalling; Region: PhrC_PhrF; pfam11131" /db_xref="CDD:151575" gene complement(389085..389186) /gene="RBAM_004030" /locus_tag="BAMF_0346" /db_xref="GeneID:9779515" CDS complement(389085..389186) /gene="RBAM_004030" /locus_tag="BAMF_0346" /note="Conserved hypothetical protein Tiny-TM" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918942.1" /db_xref="GI:308172237" /db_xref="GeneID:9779515" /translation="MMGYSGGGISSFALIVVLFILLVIVGTAFVGGY" gene complement(389281..390645) /gene="yclM" /locus_tag="BAMF_0347" /db_xref="GeneID:9779698" CDS complement(389281..390645) /gene="yclM" /locus_tag="BAMF_0347" /EC_number="2.7.2.4" /function="16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="aspartate kinase III" /protein_id="YP_003918943.1" /db_xref="GI:308172238" /db_xref="GeneID:9779698" /translation="MKVVKFGGSSLASGAQLEKVFQIVTADPARKAVVVSAPGKRFSN DTKVTDLLIRCAEHYLQKGAAPELAETVIERYAAIARELDLDISIIERIRSDLFALLN SCKTNPDRYMDAVKASGEDNNAKLIAAYFRRHGVKAEYVNPKEAGLFVTNEPGSAQVL PESYDHLYRLRNREGLIIFPGFFGYTKEHEIVTFSRSGSDITGSILANGLKADLYENF TDVDAVYSVNPSIVPHPKEINELTYREMRELSYAGFSVFHDEALIPAFRAGIPVQIKN TNNPDAKGTRVVSSRDNTNGPVIGIASDTGFCSIYISKYLMNREIGFGRKALHILEEE GLTYEHVPSGIDDITIILRHNQMDSELEQKLVTRLKQELQADEVTVRHNLALIMVVGE AMRHNVGTTARASKALSGAGVNIEMINQGSSEVSMMFGVKEEQEKHAVRALYDEFFAG VLLS" misc_feature complement(389287..390645) /gene="yclM" /locus_tag="BAMF_0347" /note="aspartate kinase; Reviewed; Region: PRK09034" /db_xref="CDD:181617" misc_feature complement(389782..390645) /gene="yclM" /locus_tag="BAMF_0347" /note="AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in...; Region: AAK_AKiii-YclM-BS; cd04245" /db_xref="CDD:58611" misc_feature complement(order(389872..389874,389911..389913, 390046..390048,390286..390288,390499..390501, 390631..390633)) /gene="yclM" /locus_tag="BAMF_0347" /note="putative catalytic residues [active]" /db_xref="CDD:58611" misc_feature complement(order(389971..389976,389983..389988, 390619..390627,390631..390633)) /gene="yclM" /locus_tag="BAMF_0347" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58611" misc_feature complement(order(390286..390288,390499..390501, 390535..390540)) /gene="yclM" /locus_tag="BAMF_0347" /note="putative aspartate binding site [chemical binding]; other site" /db_xref="CDD:58611" misc_feature complement(389500..389727) /gene="yclM" /locus_tag="BAMF_0347" /note="ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII; Region: ACT_AKiii-YclM-BS_1; cd04911" /db_xref="CDD:153183" misc_feature complement(389614..389616) /gene="yclM" /locus_tag="BAMF_0347" /note="allosteric regulatory residue; other site" /db_xref="CDD:153183" misc_feature complement(389299..389496) /gene="yclM" /locus_tag="BAMF_0347" /note="ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII; Region: ACT_AKiii-YclM-BS_2; cd04916" /db_xref="CDD:153188" gene 391059..392012 /gene="yclN" /locus_tag="BAMF_0348" /db_xref="GeneID:9780551" CDS 391059..392012 /gene="yclN" /locus_tag="BAMF_0348" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="iron-siderophore ABC transporter permease" /protein_id="YP_003918944.1" /db_xref="GI:308172239" /db_xref="GeneID:9780551" /translation="MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFES RLPRLASIIIAGMSLSICGLIMQQISRNKFVSPTTAGTMDWARLGILISLMLFTSASP LVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKR VVNIGLIIVSLIASLVILTVGMLPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVL FCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES" misc_feature 391203..391985 /gene="yclN" /locus_tag="BAMF_0348" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature order(391257..391259,391269..391277,391635..391640, 391644..391652,391656..391661,391665..391682, 391686..391694,391815..391817,391836..391838) /gene="yclN" /locus_tag="BAMF_0348" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature order(391272..391274,391278..391280,391293..391295, 391458..391460,391464..391469,391476..391481, 391488..391493,391500..391502,391509..391514, 391518..391520,391548..391553,391560..391562, 391785..391787,391941..391943,391950..391955, 391962..391964,391971..391976,391983..391985) /gene="yclN" /locus_tag="BAMF_0348" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(391518..391520,391590..391592,391761..391763, 391773..391775,391905..391907,391932..391934) /gene="yclN" /locus_tag="BAMF_0348" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene 392002..392949 /gene="yclO" /locus_tag="BAMF_0349" /db_xref="GeneID:9780552" CDS 392002..392949 /gene="yclO" /locus_tag="BAMF_0349" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="iron-siderophore ABC transporter permease" /protein_id="YP_003918945.1" /db_xref="GI:308172240" /db_xref="GeneID:9780552" /translation="MSHNKKITLLAALAIICIGFFLFYGLGNWEYSLPRRCFKVLAMM LTGGAIAFSTVIFQTITNNRILTPGILGLDSLYMLIQTVIVFLFGSMNIVMMNKNLNF VISVGLMVLLSLVLYQLMFKGEGRNVFFLLLVGVVFGTLFNSLSSFMQMLIDPNEFQV VQDKMFASFNNINTDLLGFAGAVFLLTGIYVWRFTRFFDVLSLGREHAVNLGIDYDKL VKQMLIVVAILVSVSTALVGPIMFLGLLVVNLAREFLKTYRHTYLIAGSVLISIVALV GGQFVVEKVFTFSTTLSVIINFAGGIYFIYLLLKENKSW" misc_feature 392080..392943 /gene="yclO" /locus_tag="BAMF_0349" /note="ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]; Region: CeuC; COG4605" /db_xref="CDD:34236" misc_feature 392119..392925 /gene="yclO" /locus_tag="BAMF_0349" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature order(392173..392175,392185..392193,392575..392580, 392584..392592,392596..392601,392605..392622, 392626..392634,392755..392757,392779..392781) /gene="yclO" /locus_tag="BAMF_0349" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature order(392188..392190,392194..392196,392209..392211, 392389..392391,392395..392400,392407..392412, 392419..392424,392431..392433,392440..392445, 392449..392451,392482..392487,392497..392499, 392725..392727,392881..392883,392890..392895, 392902..392904,392911..392916,392923..392925) /gene="yclO" /locus_tag="BAMF_0349" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(392449..392451,392527..392529,392701..392703, 392713..392715,392848..392850,392872..392874) /gene="yclO" /locus_tag="BAMF_0349" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene 392943..393701 /gene="yclP" /locus_tag="BAMF_0350" /db_xref="GeneID:9780553" CDS 392943..393701 /gene="yclP" /locus_tag="BAMF_0350" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="iron-siderophore ABC transporter ATP-binding protein" /protein_id="YP_003918946.1" /db_xref="GI:308172241" /db_xref="GeneID:9780553" /translation="MVEVKNVSKQYGGKVVLEKTSLSIQKGRLTSFIGPNGAGKSTLL SIMSRLIKTDSGEITVDGQEIGSCKSNDLAKKISILKQTNQINIRLTIKDLVSFGRFP YSQGKLTDEDWVHINQALSYMKLDDLKDKYLDQLSGGQCQRAFIAMIIAQDTDYIFLD EPLNNLDMKHSVEMMKLLKRLVEDFGKTVVVVIHDINFASVYSDHIVALKNGRIVKEG PAEEIIETSVLEEIYDMTIPIQEIDSQRIGVYFS" misc_feature 392943..393698 /gene="yclP" /locus_tag="BAMF_0350" /note="ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CeuD; COG4604" /db_xref="CDD:34235" misc_feature 392949..393596 /gene="yclP" /locus_tag="BAMF_0350" /note="ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC...; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214" /db_xref="CDD:72973" misc_feature 393042..393065 /gene="yclP" /locus_tag="BAMF_0350" /note="Walker A/P-loop; other site" /db_xref="CDD:72973" misc_feature order(393051..393056,393060..393068,393186..393188, 393420..393425,393522..393524) /gene="yclP" /locus_tag="BAMF_0350" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72973" misc_feature 393177..393188 /gene="yclP" /locus_tag="BAMF_0350" /note="Q-loop/lid; other site" /db_xref="CDD:72973" misc_feature 393348..393377 /gene="yclP" /locus_tag="BAMF_0350" /note="ABC transporter signature motif; other site" /db_xref="CDD:72973" misc_feature 393408..393425 /gene="yclP" /locus_tag="BAMF_0350" /note="Walker B; other site" /db_xref="CDD:72973" misc_feature 393432..393443 /gene="yclP" /locus_tag="BAMF_0350" /note="D-loop; other site" /db_xref="CDD:72973" misc_feature 393510..393530 /gene="yclP" /locus_tag="BAMF_0350" /note="H-loop/switch region; other site" /db_xref="CDD:72973" gene 393723..394673 /gene="yclQ" /locus_tag="BAMF_0351" /db_xref="GeneID:9780554" CDS 393723..394673 /gene="yclQ" /locus_tag="BAMF_0351" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="iron-siderophore ABC transporter binding lipoprotein" /protein_id="YP_003918947.1" /db_xref="GI:308172242" /db_xref="GeneID:9780554" /translation="MKKFALLFIALVTIFVVSACGNGNGDKTSGKSKETITIKDDLNK EGVKVPKNPKKVVVFNFGMLDTMDELGLQDHVAGLPKQSIPKYLSSYKSDKYANTGGL KEPDFEKVADIDPDLIIIAHRQSDSYKEFSKIAPTIYLDDDYTNYVDRFKHNTEVIGK IFNKENEVKDKLAKIDKSIADLKKKTSSTDKNGLVVMANDGKISAFGSKSRYGFIHDV FGVKPADKNIEASLHGQSISYEYIAKTNPDYLFVVDRGTAIGSKSSTKQVVENDYVKS VKAVKNNHVVYLDSATWYLSGGGLESMAQMVKEVKNGIEK" misc_feature 393726..394667 /gene="yclQ" /locus_tag="BAMF_0351" /note="ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: CeuA; COG4607" /db_xref="CDD:34238" misc_feature 393906..394658 /gene="yclQ" /locus_tag="BAMF_0351" /note="Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins...; Region: FatB; cd01140" /db_xref="CDD:29743" misc_feature order(393906..393908,393966..393968,394026..394028, 394083..394085,394089..394091,394332..394334, 394422..394424) /gene="yclQ" /locus_tag="BAMF_0351" /note="putative ligand binding residues [chemical binding]; other site" /db_xref="CDD:29743" gene complement(394714..396138) /gene="ycnB" /locus_tag="BAMF_0352" /db_xref="GeneID:9780555" CDS complement(394714..396138) /gene="ycnB" /locus_tag="BAMF_0352" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="efflux transporter" /protein_id="YP_003918948.1" /db_xref="GI:308172243" /db_xref="GeneID:9780555" /translation="MNKSIETAPYNRSVIVGILLAGAFVAILNQTLLITALPHIMNDF NIDANKAQWLTTSFMLTNGILIPISAFLIEKFTSRTLLISAMSIFTAGTIVGAFAPNF PVLLTARIIQAAGAGIMLPLMQTVFLTIFPMEKRGRAMGMVGLVISFAPAIGPTLSGW AVEAFSWRSLFYIIFPIAVIDLLLAIILMKNVTTLRKTQIDILSVILSTLGFGGLLYG FSSAGSSGWTSTEVLTSLLVGAVALIFFIARQIKLKKPMLEFRVFSFGIFSLTTLLGT LVFALLIGTETILPLYTQKVRGVSAFDTGLMLLPGAIVMGMMSPFIGRIFDKIGGKGL AMTGFFIILLTSLPFMNLTDSTSLIWIVVVYTARLLGTAMIMMPVTTAGINALPRHLI PHGTAMNNTVRQVGGSIGTALLVSVMSSQAAHANASSPANAALHGMNAAFVVAACIAL AGFLLSFTLKKKPSQPEQQQAVTR" misc_feature complement(<395611..396093) /gene="ycnB" /locus_tag="BAMF_0352" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(394906..396084) /gene="ycnB" /locus_tag="BAMF_0352" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature complement(order(395686..395688,395704..395709, 395716..395721,395755..395757,395764..395769, 395776..395781,395788..395793,395929..395934, 395938..395943,395953..395955,395962..395967, 395974..395976,396025..396030,396034..396042, 396049..396051)) /gene="ycnB" /locus_tag="BAMF_0352" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature complement(394900..>395361) /gene="ycnB" /locus_tag="BAMF_0352" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(396156..397031) /gene="ycnC" /locus_tag="BAMF_0353" /db_xref="GeneID:9780556" CDS complement(396156..397031) /gene="ycnC" /locus_tag="BAMF_0353" /function="Transcriptional regulator" /note="Uncharacterized HTH-type transcriptional regulator ycnC;, Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal, Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918949.1" /db_xref="GI:308172244" /db_xref="GeneID:9780556" /translation="MNDKKTDILLAARKLFSEKSFSSVSMQAIAEECKVSKASLYKLF ESKEDLLLELLDFNQKQMVAAASLLNEETSLSPEERFAKKLMAELEGFRRNQQFFNML MYGSPSSINERVKRHIHRARSIFICWHRDSLIQTYGEEIIPYVWELVIVLQGLLRECI TLIKLEKEPLALEPLTEFIIRHLNLIVENRKTETALPQEMIDLYIASASSFEPKGKTV LLAESLKELKEAVSALPEEKYDAAGLASAASMLEKESADKQPRDFLLKALIGYLEQAG PLHQPLAAVKTLLKL" misc_feature complement(<396909..397010) /gene="ycnC" /locus_tag="BAMF_0353" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(397193..397939) /gene="ycnD" /locus_tag="BAMF_0354" /db_xref="GeneID:9780557" CDS complement(397193..397939) /gene="ycnD" /locus_tag="BAMF_0354" /EC_number="1.-.-.-" /function="Nitroreductase" /note="NADPH-dependent oxidoreductase;, Nitroreductase-like, Nitroreductase family" /codon_start=1 /transl_table=11 /product="NADPH-FMN oxidoreductase" /protein_id="YP_003918950.1" /db_xref="GI:308172245" /db_xref="GeneID:9780557" /translation="MNEVLQILTDHRSIRSYTDEPVSDEQLDLIIQAAQAAPTSINGQ QFTVIAVKDKERKKKISELAGGQPWIDQAPVFLLFCADFNRAKIALEEYNDTPLEVTN GLESVLVGAVDVGIALGTATAAAESMGLGTVPIGAVRGKPDELIELLKLPKYVFPVSG LVIGHPADRSAKKPRLPQAAVLHHETYQEEGLRTHIEAYDKQMSEYMQNRTGGQETRN WSQGITSYYKQLYYPHIREMLEKQGFKTDK" misc_feature complement(397259..397930) /gene="ycnD" /locus_tag="BAMF_0354" /note="This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH...; Region: NfsA_FRP; cd02146" /db_xref="CDD:48392" misc_feature complement(order(397283..397285,397343..397345, 397391..397399,397412..397420,397493..397495, 397523..397525,397559..397561,397571..397573, 397580..397585,397592..397594,397613..397615, 397694..397696,397772..397774,397781..397786, 397790..397798,397802..397804,397808..397810, 397814..397816,397826..397837,397841..397843, 397907..397909,397913..397918,397928..397930)) /gene="ycnD" /locus_tag="BAMF_0354" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48392" misc_feature complement(order(397415..397417,397421..397423, 397463..397465,397520..397525,397529..397534, 397733..397735,397739..397741,397895..397897, 397901..397903,397907..397909)) /gene="ycnD" /locus_tag="BAMF_0354" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:48392" misc_feature complement(order(397310..397312,397319..397324, 397421..397423,397427..397429,397520..397525, 397814..397816,397895..397897)) /gene="ycnD" /locus_tag="BAMF_0354" /note="NADPH bind site [chemical binding]; other site" /db_xref="CDD:48392" gene complement(397956..398243) /gene="ycnE" /locus_tag="BAMF_0355" /db_xref="GeneID:9780558" CDS complement(397956..398243) /gene="ycnE" /locus_tag="BAMF_0355" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918951.1" /db_xref="GI:308172246" /db_xref="GeneID:9780558" /translation="MIVLQAYMKVKADKREEFLGEAQSLVQHSRAEEGNVQYDLFEKI GEENTFVMLEQWKDEEAMKSHNATDHFQGFVAKAKDLLSAPLDVVRTELSE" misc_feature complement(397959..398243) /gene="ycnE" /locus_tag="BAMF_0355" /note="Antibiotic biosynthesis monooxygenase; Region: ABM; cl10022" /db_xref="CDD:195949" gene 398385..398699 /gene="yczG" /locus_tag="BAMF_0356" /db_xref="GeneID:9780559" CDS 398385..398699 /gene="yczG" /locus_tag="BAMF_0356" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="ArsR family transcriptional regulator" /protein_id="YP_003918952.1" /db_xref="GI:308172247" /db_xref="GeneID:9780559" /translation="MNIPNHPETARLQLTKVLHALSDPLRLELVKQLAETTEKTCSTC ADVRVAKSTLSHHFKVLREAGVAQVRIDGKHRYYSLRKDDLQEAFPGLLEAILQTEPD RW" misc_feature 398436..398636 /gene="yczG" /locus_tag="BAMF_0356" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature order(398436..398441,398445..398447,398454..398456, 398463..398468,398475..398480,398487..398489, 398577..398579) /gene="yczG" /locus_tag="BAMF_0356" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature order(398439..398444,398454..398462,398499..398507, 398532..398543,398547..398552,398559..398564, 398568..398573,398589..398597,398610..398618) /gene="yczG" /locus_tag="BAMF_0356" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature order(398499..398501,398508..398510) /gene="yczG" /locus_tag="BAMF_0356" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene complement(398727..400136) /gene="gabR" /locus_tag="BAMF_0357" /db_xref="GeneID:9780574" CDS complement(398727..400136) /gene="gabR" /locus_tag="BAMF_0357" /codon_start=1 /transl_table=11 /product="GntR/MocR family transcriptional regulator" /protein_id="YP_003918953.1" /db_xref="GI:308172248" /db_xref="GeneID:9780574" /translation="MLTISIDHSETADYIYQQIYQHVKAAVLKRSLMPHTKVPSKREL AETLKVSVNSVNSAYQQLLSEGYLYAVERKGFFVEEIDTFYHEEAPSLLLPDDLRERE PDKSGWISFSHMSVDTAHFPLKSWFRCEQKAAARSFHTLGELVHPQGLYEVRETISRL ISLTRGVTCRPEQIVLGAGTQMLMQLLTELLPKDALYAMENPGYMRMYRLLQNLGKKT ATVSLDEKGMSMAEIEKQRPCVLITTPSHQFPSGVIMPASRRIQLLNWAAEQDGRFII EDDYDSEFKYDADTIPALQSLDRFQNVIYMGTFSKSLFPGLRISYMVLPPGLLRAFKE RTYDLHTCSTLGQLALKEFIDSGEYQKHIKKMKQHYKNMRERLISALEETFGERINVK GANAGLHFVIEFDCPRSEKEILARADAEQLDLFAMSRFRLKAGGESNKPQLILGFARL KEKEIQEGVTRLYRAVFGA" misc_feature complement(398739..400106) /gene="gabR" /locus_tag="BAMF_0357" /note="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:31361" misc_feature complement(399903..400094) /gene="gabR" /locus_tag="BAMF_0357" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(399909..399920,399924..399929, 399957..399959,399966..399971,399975..399989, 400011..400016,400020..400022,400089..400091)) /gene="gabR" /locus_tag="BAMF_0357" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(398745..399812) /gene="gabR" /locus_tag="BAMF_0357" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(399183..399185,399204..399209, 399213..399215,399294..399296,399390..399392, 399525..399527,399594..399602)) /gene="gabR" /locus_tag="BAMF_0357" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(399090..399092,399099..399101, 399183..399191,399315..399317,399495..399497, 399591..399593)) /gene="gabR" /locus_tag="BAMF_0357" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(399204..399206) /gene="gabR" /locus_tag="BAMF_0357" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 400245..401552 /gene="gabT" /locus_tag="BAMF_0358" /db_xref="GeneID:9778853" CDS 400245..401552 /gene="gabT" /locus_tag="BAMF_0358" /EC_number="2.6.1.19" /function="16.8: Protect" /codon_start=1 /transl_table=11 /product="4-aminobutyrate aminotransferase" /protein_id="YP_003918954.1" /db_xref="GI:308172249" /db_xref="GeneID:9778853" /translation="MSQTVSSEVTTAQWQQKRDQFVSNGVGNGNRSMAVKGEGALLYD LDGRRFIDFAGAIGTLNVGHSHPKVVEAVKKQAEALIHPGFNVMMYPSYIELAEKLCA IAPGDHAKKAIFLNSGAEAVENAVKIARKYTKRQAVVSFTRGFHGRTNMTMSMTSKVK PYKFGFGPFASEVYQAPFPYYYQKPAGMSNEQYDDFIISAFDDFFIAAVAPETVACVV MEPVQGEGGFIIPSKRFVQHVAAFCKKHGIVFVADEIQTGFARTGTYFAIEHFGAVPD LITVSKSLAAGLPLSGVIGRAEMLDAAAPGELGGTYAGSPLGCAAALAVLDIIEEEGL NQRSEEIGRIIEHQALEWKKEHACIGEVRRLGAMAAIEIVKDPDTREPDKAKAAAVAK AANENGLLLLTAGINGNIIRFLTPLVVTDEQLKEGLSIIEAAL" misc_feature 400245..401549 /gene="gabT" /locus_tag="BAMF_0358" /note="4-aminobutyrate aminotransferase; Reviewed; Region: PRK06918" /db_xref="CDD:180748" misc_feature 400344..401549 /gene="gabT" /locus_tag="BAMF_0358" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature order(400593..400601,400677..400682,400686..400688, 400902..400904,401001..401003,401007..401012, 401088..401090) /gene="gabT" /locus_tag="BAMF_0358" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature order(400596..400601,400677..400682,400902..400904, 401001..401003,401010..401012,401088..401090) /gene="gabT" /locus_tag="BAMF_0358" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 401088..401090 /gene="gabT" /locus_tag="BAMF_0358" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 401658..403046 /gene="gabD" /locus_tag="BAMF_0359" /db_xref="GeneID:9778854" CDS 401658..403046 /gene="gabD" /locus_tag="BAMF_0359" /EC_number="1.2.1.16" /function="16.8: Protect" /codon_start=1 /transl_table=11 /product="succinate-semialdehyde dehydrogenase" /protein_id="YP_003918955.1" /db_xref="GI:308172250" /db_xref="GeneID:9778854" /translation="MPEQLTVYNPATGEAIESIPQQTAEDVEKAIERSHKAFQSWSKT SAGERASLLKKWYELIVENKEELAELITKENGKPYEEAVGEVLYGAGYIEWFAEEAKR IYGRTVPAPTTGKRIVVTRQAVGPVAAITPWNFPNAMITRKAAPALAAGCTFIIKPAE DTPLSAYALARLAFEAGIPEDVLQVVIGDGAEIGNVFTSSPKIRKITFTGSTPVGKIL MKNSADTVKHMSMELGGHAPLIVDEDADLDLAVAQTMASKFRNAGQTCVCANRLIVHE SVKDEFAKKLSEEAAKLKVGNGLEKGVNVGPVINKKGFDKIVGQINDAVEKGAKVLTG GTYDQNDEKGCYFVTPTVLSNVDTSMNIMHEETFGPVAPIVTFSDIDEAIKLANDTPF GLAAYFFTENYRRGIYISEQLEYGIIGWNDGGPSAVQAPFGGMKESGIGREGGTEGIE PYLETKYMSIGL" misc_feature 401676..403037 /gene="gabD" /locus_tag="BAMF_0359" /note="Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103" /db_xref="CDD:143421" misc_feature 401676..403025 /gene="gabD" /locus_tag="BAMF_0359" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature order(401790..401792,401817..401819,401940..401942, 401949..401954,401958..401984,402000..402008, 402021..402023,402267..402269,402303..402305, 402315..402317,402324..402326,402495..402497, 402507..402509,402645..402647,402858..402860, 402864..402869,402879..402881,402885..402887, 402894..402896,402900..402920,402936..402938, 402945..402950,402966..402968,402981..402983, 403017..403037) /gene="gabD" /locus_tag="BAMF_0359" /note="tetramerization interface [polypeptide binding]; other site" /db_xref="CDD:143421" misc_feature order(402045..402059,402081..402083,402126..402128, 402132..402137,402279..402290,402297..402299, 402306..402311,402351..402359,402453..402455, 402753..402755,402759..402761,402837..402839, 402951..402953) /gene="gabD" /locus_tag="BAMF_0359" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143421" misc_feature order(402057..402059,402351..402353,402444..402446, 402453..402455) /gene="gabD" /locus_tag="BAMF_0359" /note="catalytic residues [active]" /db_xref="CDD:143421" gene 403200..404063 /gene="glcU" /locus_tag="BAMF_0360" /db_xref="GeneID:9778851" CDS 403200..404063 /gene="glcU" /locus_tag="BAMF_0360" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="glucose permease" /protein_id="YP_003918956.1" /db_xref="GI:308172251" /db_xref="GeneID:9778851" /translation="MDILLALLPALFWGSIVLFNVKLGGGPYSQTLGTTIGALIVSFV LYLFVHPVLSVRIFIVGIVSGLFWSLGQSNQLKSIQLMGVSKTMPISTGMQLVSTSLF GVIVFKEWSTPIAITLGILALIFIIVGIVLTSLEDKKGRADGEPGNLKKGIVILLIST LGYLVYVVVARLFGVSGWSALLPQAIGMVIGGLLLTYKHKPFNKYALRNILPGIIWAL GNMFLFISQPRVGVATSFSLSQMGIVISTLGGIFILRESKTKRQLVAIAIGIILIIVA AVFLGVAKSNS" misc_feature 403245..403985 /gene="glcU" /locus_tag="BAMF_0360" /note="Sugar transport protein; Region: Sugar_transport; pfam06800" /db_xref="CDD:115457" misc_feature <403368..>403676 /gene="glcU" /locus_tag="BAMF_0360" /note="L-rhamnose-proton symport protein (RhaT); Region: RhaT; cl05728" /db_xref="CDD:186664" gene 404084..404869 /gene="gdh" /locus_tag="BAMF_0361" /db_xref="GeneID:9778905" CDS 404084..404869 /gene="gdh" /locus_tag="BAMF_0361" /EC_number="1.1.1.47" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="glucose 1-dehydrogenase" /protein_id="YP_003918957.1" /db_xref="GI:308172252" /db_xref="GeneID:9778905" /translation="MYTDLKGKVVAITGASSGLGRAMAIRFGQEQAKVVINYYSNEKE AQTVKEEVQKAGGEAVIIQGDVTKEEDVKNIVQTAVKEFGTLDIMINNAGMENPVESH KMPLKDWNKVINTNLTGAFLGCREAIKYYVENDIQGNVINMSSVHEMIPWPLFVHYAA SKGGIKLMTETLALEYAPKRIRVNNIGPGAINTPINAEKFADPVQKKDVESMIPMGYI GEPEEIAAVAVWLASKESSYVTGITLFADGGMTQYPSFQAGRG" misc_feature 404084..404866 /gene="gdh" /locus_tag="BAMF_0361" /note="glucose-1-dehydrogenase; Provisional; Region: PRK08936" /db_xref="CDD:181585" misc_feature 404096..404854 /gene="gdh" /locus_tag="BAMF_0361" /note="glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; Region: GlcDH_SDR_c; cd05358" /db_xref="CDD:187616" misc_feature order(404123..404125,404129..404140,404198..404200, 404273..404284,404357..404365,404426..404428, 404510..404518,404555..404557,404567..404569, 404645..404656,404660..404671) /gene="gdh" /locus_tag="BAMF_0361" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187616" misc_feature order(404387..404389,404393..404395,404408..404410, 404435..404437,404456..404458,404525..404527, 404537..404539,404558..404563,404573..404575, 404582..404584,404594..404599,404606..404611) /gene="gdh" /locus_tag="BAMF_0361" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187616" misc_feature order(404429..404431,404516..404518,404555..404557, 404567..404569) /gene="gdh" /locus_tag="BAMF_0361" /note="active site" /db_xref="CDD:187616" gene complement(404915..405526) /gene="ycnI" /locus_tag="BAMF_0362" /db_xref="GeneID:9778873" CDS complement(404915..405526) /gene="ycnI" /locus_tag="BAMF_0362" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918958.1" /db_xref="GI:308172253" /db_xref="GeneID:9778873" /translation="MLKKKALVFMSAITLSLIGFTATASAHVSVKPAESAAGSWETYT MKVPVEKNEPTTKVVLKMPAGVEFQQYQPIPGWKTSVSKHDDKAVSVTWEAKNGGIQP GQFQQFTFVAKNPEKTGDAAWDAYQYYKDGSIVEWTGDEKADTPHSITKITKAANVTD AHGAEQSKEESKSGVSALDIAAIVLSAAAIILSIAALVKKKRA" misc_feature complement(405059..405457) /gene="ycnI" /locus_tag="BAMF_0362" /note="Reeler-like domain of YcnI and similar proteins; Region: YcnI_like; cd08545" /db_xref="CDD:176097" gene complement(405539..407167) /gene="ycnJ" /locus_tag="BAMF_0363" /db_xref="GeneID:9780560" CDS complement(405539..407167) /gene="ycnJ" /locus_tag="BAMF_0363" /function="copper export protein" /note="Copper resistance protein D;, Copper resistance D, Copper resistance protein D" /codon_start=1 /transl_table=11 /product="Copper resistance protein D" /protein_id="YP_003918959.1" /db_xref="GI:308172254" /db_xref="GeneID:9780560" /translation="MRQNKRWLIFLLFLVLIPKTSFAHAYITNSNPGENSELKQAPKQ IEIEFNEQIEEGFHSIKVYNSSGERVDAGKTVIQKNDSRIMTAALKKNLPHDIYRAEW NAVSADGHPVSGVIPFSIGKAGGGLQEKTSSEAPLHPEAAIDRGILYTALSLFIGTAF FHLFWFRKNESSSKNSRTVKLLVISLCLMGLALVCQLPIQTKENAGGAWSAAFQPDYV KETLLKTAGGYVWMIQISLFILLAVSMIPLLKKKAFRSFAYWTAPLLFFFASLLAKAF AGHAAVIDEKAVGITMDFLHLSAASVWTGGIAALVLLLSSEWRNTDKTIAWETVRRFS PWAFASVGVLLFSGVLNGFFIIRSFDSLFHTAYGKTLLLKIGLFVIMLALGAIHVWMT KLRRNKSISGTIKAEWVIGIAVLFTTAVFTSLPSPPPPAPLPFNGSDMIGNGETLSLH ITPNQPGKNEFQVIVTDHNGSLVKDIQQFTVTVYQTGFSGKQHESTFDLKKTKEGTFE AANMSITEKGNWKIKVHGLTNDFNEINQIFSTTN" misc_feature complement(406799..407167) /gene="ycnJ" /locus_tag="BAMF_0363" /note="Copper resistance protein CopC; Region: CopC; cl01012" /db_xref="CDD:194007" misc_feature complement(405902..406744) /gene="ycnJ" /locus_tag="BAMF_0363" /note="Copper resistance protein D; Region: CopD; cl00563" /db_xref="CDD:193872" gene complement(407200..407796) /gene="ycnK" /locus_tag="BAMF_0364" /db_xref="GeneID:9780561" CDS complement(407200..407796) /gene="ycnK" /locus_tag="BAMF_0364" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="YP_003918960.1" /db_xref="GI:308172255" /db_xref="GeneID:9780561" /translation="MHKKEDAELLPIHRQQTLLEWLKEEGPLKISDISERFGVSEMTV YRDVNQLADANRIIRTPGGITLPPASEQSANQCGYCLRPIQHSYSVQLITVSQAVEQM CCIHCAILRYEDKKEEVSHVICKDFLLQTTLTAASAYFLVHADIDLHCCRPQAIPFST LDYAERFQKGFGGVICTFDKAADIILHDRQKGCTCSKT" misc_feature complement(<407260..407772) /gene="ycnK" /locus_tag="BAMF_0364" /note="Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:31540" misc_feature complement(407599..407757) /gene="ycnK" /locus_tag="BAMF_0364" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 407949..408290 /gene="ycnL" /locus_tag="BAMF_0365" /db_xref="GeneID:9780562" CDS 407949..408290 /gene="ycnL" /locus_tag="BAMF_0365" /codon_start=1 /transl_table=11 /product="reductase or disulfide isomerase" /protein_id="YP_003918961.1" /db_xref="GI:308172256" /db_xref="GeneID:9780562" /translation="MKETTCPNCGKPITGDMVRSSIIPCQFDCGHCHVKLREYKVSAP IMAVAIAITVLLIYLVQMARIAVMPMFPAARYVPAAIFALVCAYPVFIVSERLIAKLV VTKGHIIYRKR" gene 408474..409907 /gene="mtlA1" /locus_tag="BAMF_0366" /db_xref="GeneID:9780563" CDS 408474..409907 /gene="mtlA1" /locus_tag="BAMF_0366" /EC_number="2.7.1.69" /function="Phosphotransferase system, mannitol-specific IIBC component" /note="[KO:K02799 K02800], PTS system mannitol-specific EIICB component; EIICB-Mtl; EII-Mtl; Includes: RecName: Full=Mannitol permease IIC component; PTS system mannitol-specific EIIC component; Includes: RecName: Full=Mannitol-specific phosphotransferase enzyme IIB component; PTS system mannitol-specific EIIB component;, Phosphotransferase system, mannitol-specific enzyme IIC, Phosphotransferase system, EIIC, mtlA: PTS system, mannitol-specific IIC component" /codon_start=1 /transl_table=11 /product="PTS system mannitol-specific transporter subunit IIBC" /protein_id="YP_003918962.1" /db_xref="GI:308172257" /db_xref="GeneID:9780563" /translation="MQQEQQAGMKVKIQRFGSYLSGMIMPNIGAFIAWGIITALFIPK GWFPNPQLNTLVSPMITYLLPLLIAYTGGKMIYDHRGGVVGATAAIGVIVGADIPMFL GAMIMGPLGGYLIKQVDRLFKDKVRQGFEMLINNFTAGIIGAVLTIIAFYAIGPVVLS LNKLLAAGVEVIVHANLLPIASVFVEPAKVLFLNNAINHGILSPIGIEQAAKVGKSIL FLVEANPGPGLGILLAYMFFGKGSSKSTAPGAAIIHFFGGIHEIYFPYILMKPMLILA AIAGGASGLLTFSIFNAGLVAASSPGSIIAILALTPKGSYLGVLAGVIVAAAVSFIVS ALILKSSKAGEEDLTAAAEKMQEMKGRKSEAAAALADTEEEPESGAADISADQVSRII FACDAGMGSSAMGASILRNKVKKAELDIDVTNTSINNLPNDADIVITHKDLTDRAKAK RPEAVHISVDNFLNSPKYDELIEKLKN" misc_feature 408483..409904 /gene="mtlA1" /locus_tag="BAMF_0366" /note="Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]; Region: MtlA; COG2213" /db_xref="CDD:32395" misc_feature 408507..409517 /gene="mtlA1" /locus_tag="BAMF_0366" /note="Phosphotransferase system, EIIC; Region: PTS_EIIC; cl00557" /db_xref="CDD:186079" misc_feature 409638..409898 /gene="mtlA1" /locus_tag="BAMF_0366" /note="PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a...; Region: PTS_IIB_mannitol; cd05567" /db_xref="CDD:99909" misc_feature 409653..409679 /gene="mtlA1" /locus_tag="BAMF_0366" /note="active site" /db_xref="CDD:99909" misc_feature order(409656..409667,409671..409679) /gene="mtlA1" /locus_tag="BAMF_0366" /note="P-loop; other site" /db_xref="CDD:99909" misc_feature 409656..409658 /gene="mtlA1" /locus_tag="BAMF_0366" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99909" gene 409933..410364 /gene="mtlA2" /locus_tag="BAMF_0367" /db_xref="GeneID:9779291" CDS 409933..410364 /gene="mtlA2" /locus_tag="BAMF_0367" /EC_number="2.7.1.69" /function="Mannitol/fructose-specific phosphotransferase system, IIA domain" /note="[KO:K02798 K02799 K02800], PTS system mannitol-specific EIICBA component; EIICBA-Mtl; EII-Mtl; Includes: RecName: Full=Mannitol permease IIC component; PTS system mannitol-specific EIIC component; Includes: RecName: Full=Mannitol-specific phosphotransferase enzyme IIB component; PTS system mannitol-specific EIIB component; Includes: RecName: Full=Mannitol-specific phosphotransferase enzyme IIA component; PTS system mannitol-specific EIIA component;, Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2, fruA: PTS system, fructose subfamily, IIA component" /codon_start=1 /transl_table=11 /product="PTS system mannitol specific transporter subunit IIA" /protein_id="YP_003918963.1" /db_xref="GI:308172258" /db_xref="GeneID:9779291" /translation="MEVLAKANIKLNQTVNSKEDAIRLAGQTLIDNGYVKNGYVEKMF EREETSSTFMGNFIAIPHGTEDAKEEVLHSGISIIQIPNGVEYGEGNTAKVVFGIAGK NNEHLDILSNIAIICSEEENIERLISAKTEEELAAIFSEVN" misc_feature 409942..410349 /gene="mtlA2" /locus_tag="BAMF_0367" /note="PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211" /db_xref="CDD:29266" misc_feature order(410068..410070,410116..410118) /gene="mtlA2" /locus_tag="BAMF_0367" /note="active site" /db_xref="CDD:29266" misc_feature 410116..410118 /gene="mtlA2" /locus_tag="BAMF_0367" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29266" gene 410366..411487 /gene="mtlD" /locus_tag="BAMF_0368" /db_xref="GeneID:9779292" CDS 410366..411487 /gene="mtlD" /locus_tag="BAMF_0368" /EC_number="1.1.1.17" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="mannitol-1-phosphate dehydrogenase" /protein_id="YP_003918964.1" /db_xref="GI:308172259" /db_xref="GeneID:9779292" /translation="MIALHFGAGNIGRGFIGALLHHSGYEVVFADVNETMVSLLNEKK EYTVELADGGRQTETIGPVSAINSAKQEQELYRLINDAAIITTAVGPNVLKFIAPSIA EGLKRRTSSEPLNIIACENMIGGSSFLKKEVFGHLMEAERELVNQTVGFPDSAVDRIV PIQHHEDPLKVSVEPFFEWVIDRTGFSGGQPALKGALFTDDLTPFIERKLFTVNTGHA VTAYVGYQRGLKTVKEAIDHPEIRRVVYDALSETGEYLVKAYGFKQAEHEQYMKKIIS RFENEYITDDVTRVARSPLRKLGANDRLVGPAKKIKEPNALAEGIAAALRFDYKGDPE AVELQKLIAEKGTSAVLQDICGIQPHEPLHGIVLKKLNQ" misc_feature 410366..411484 /gene="mtlD" /locus_tag="BAMF_0368" /note="mannitol-1-phosphate 5-dehydrogenase; Provisional; Region: PRK02318" /db_xref="CDD:179414" misc_feature 410366..410731 /gene="mtlD" /locus_tag="BAMF_0368" /note="Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232" /db_xref="CDD:144722" misc_feature 410804..411454 /gene="mtlD" /locus_tag="BAMF_0368" /note="Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125" /db_xref="CDD:149275" gene 411556..411951 /gene="ycsD" /locus_tag="BAMF_0369" /db_xref="GeneID:9779293" CDS 411556..411951 /gene="ycsD" /locus_tag="BAMF_0369" /EC_number="4.2.1.-" /function="3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases" /note="(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; (3R)-hydroxymyristoyl ACP dehydrase;, Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ, FabA-like domain, fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ" /codon_start=1 /transl_table=11 /product="(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase" /protein_id="YP_003918965.1" /db_xref="GI:308172260" /db_xref="GeneID:9779293" /translation="MNEELLPHRYPFLLIDGTKNSEAGKWAEAYKYISENDWFMSESQ REMPFSLIVEAMAQTAACAGITGENSLGLLSAVKKAERLGAALPGDRLDLLFEVTRIR RGFVFGRAKASVAGKPVAEAEISIFIQPS" misc_feature 411571..411942 /gene="ycsD" /locus_tag="BAMF_0369" /note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288" /db_xref="CDD:48033" gene complement(411990..412154) /gene="yczO" /locus_tag="BAMF_0370" /db_xref="GeneID:9780565" CDS complement(411990..412154) /gene="yczO" /locus_tag="BAMF_0370" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918966.1" /db_xref="GI:308172261" /db_xref="GeneID:9780565" /translation="MKERKQKNKPNENPEHHDLTDPIPLEELKENANDEKHKHDQRDN SQSERDYDTK" gene 412283..413032 /gene="ycsE" /locus_tag="BAMF_0371" /db_xref="GeneID:9780577" CDS 412283..413032 /gene="ycsE" /locus_tag="BAMF_0371" /EC_number="3.1.3.-" /codon_start=1 /transl_table=11 /product="phosphatase" /protein_id="YP_003918967.1" /db_xref="GI:308172262" /db_xref="GeneID:9780577" /translation="MPIQREDADIKLIAIDMDGTLLNDEQLIPEENRRAIKEAEAKGI HVVISTGRTLMTCRELAESLELSSFLITANGSEIWDSNFELVERKLLHTDHIQKLWDL RNKHNTNFWASTVDRVWRGEFPETITDHQWLKFGFEIEDDDVRNEVLKELKENKELEI TNSSPINIEVNALGINKAAALAKVSEKLGFTMENVMAMGDSLNDIAMIEKAGVGVAMG NAQDIVKETADWVTDVNTENGVAKAIRHWVL" misc_feature 412316..>412444 /gene="ycsE" /locus_tag="BAMF_0371" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature 412319..413014 /gene="ycsE" /locus_tag="BAMF_0371" /note="haloacid dehalogenase-like hydrolase; Region: Hydrolase_3; pfam08282" /db_xref="CDD:116866" misc_feature order(412328..412336,412430..412435) /gene="ycsE" /locus_tag="BAMF_0371" /note="active site" /db_xref="CDD:119389" misc_feature 412328..412345 /gene="ycsE" /locus_tag="BAMF_0371" /note="motif I; other site" /db_xref="CDD:119389" misc_feature 412430..412432 /gene="ycsE" /locus_tag="BAMF_0371" /note="motif II; other site" /db_xref="CDD:119389" misc_feature <412766..413014 /gene="ycsE" /locus_tag="BAMF_0371" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 413233..413997 /gene="ycsF" /locus_tag="BAMF_0372" /db_xref="GeneID:9780566" CDS 413233..413997 /gene="ycsF" /locus_tag="BAMF_0372" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="nitrogen-containing heterocycle degradation enzyme" /protein_id="YP_003918968.1" /db_xref="GI:308172263" /db_xref="GeneID:9780566" /translation="MFQIDINCDLGESFGAYKIGFDEEILDYVTSANIACGFHAGDPT VMRKTVALAAEKGVKIGAHPGLFDLQGFGRRQIAITPEEAYDLTLYQIGALSGFLKAE GVAMQHVKPHGALYNMAAVNRGLSDAIAQAVFHFDPGLILFGLSGSELIKAGDRIGLQ TASEVFADRTYQKDGTLTPRSQPDALIQDDKKAVGQVIRMVKDNTVTSAEGQAVNLKA DTVCIHGDGAHALTFAKTIRKELKAADIQISALAKD" misc_feature 413233..413970 /gene="ycsF" /locus_tag="BAMF_0372" /note="LamB/YcsF family; Region: LamB_YcsF; cl00664" /db_xref="CDD:186134" gene 414020..415234 /gene="ycsG" /locus_tag="BAMF_0373" /db_xref="GeneID:9780567" CDS 414020..415234 /gene="ycsG" /locus_tag="BAMF_0373" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="branched chain amino acids transporter" /protein_id="YP_003918969.1" /db_xref="GI:308172264" /db_xref="GeneID:9780567" /translation="MEQKKKTAGKAPGRWSLLLGATFLMATSSIGPGFLTQTATFTNT LAASFGFIILISIILDIFAQTNVWRIIAVSGKRGQEIANMVLPGAGYAIAFLVVLGGL AFNIGNIGGAGLGLQVLFGIKPEIGALISAAVAVLIFVIKEAGKVMDRFMQIAGIVMI ILTVYVAVTTAPPVGHAVAKTFMPDHISVLAIVTLVGGTVGGYITFAGGHRLLDSGIQ GKEVIPQVTKSSITGVLITSIMRIALFLAVLGVVSKGLRIDPDNPAASVFRLAAGNVG YKIFGVIMWSAAITSVIGAAYTSVSFFKSFSAKIEKHSHGVIIGFIIVSTLIFVTIGQ PAKILVAVGSLNGLILPLALAMILLGAYKKKIVGDYKHPVWLTIAGATVVVVMAIMGI YTLFSQLPQLWS" misc_feature 414071..415228 /gene="ycsG" /locus_tag="BAMF_0373" /note="Natural resistance-associated macrophage protein; Region: Nramp; cl00836" /db_xref="CDD:193950" gene 415239..416033 /gene="ycsI" /locus_tag="BAMF_0374" /db_xref="GeneID:9780568" CDS 415239..416033 /gene="ycsI" /locus_tag="BAMF_0374" /function="18: Unknown function" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918970.1" /db_xref="GI:308172265" /db_xref="GeneID:9780568" /translation="MKKHMSDMTPEEVRQLIRKGQMTGPTAGWAASYAQANLVVLQKD LAFDFLLFCQRNQKPCPVLDVTDTGSPVPAVAAPGADIRTDFPKYRIYRHGVLTEEVT DITRYWKDDFVGFLIGCSFSFEQALINQQIPIRHIDEGVNVPMYITNIDCVPAGRFSG KMVVSMRPIPERLAVRAAQVTSRFPAVHGAPVSIGNPKSIGISDLNQPDFGDAVTVRE GEVPVFWACGVTPQAVIMEAKPEIVMTHSPGHMLITDIRNESLAVL" misc_feature 415248..416030 /gene="ycsI" /locus_tag="BAMF_0374" /note="Protein of unknown function (DUF1445); Region: DUF1445; cl01790" /db_xref="CDD:186475" gene 416063..416794 /gene="kipI" /locus_tag="BAMF_0375" /db_xref="GeneID:9780569" CDS 416063..416794 /gene="kipI" /locus_tag="BAMF_0375" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="inhibitor of the autophosphorylation reaction of KinA" /protein_id="YP_003918971.1" /db_xref="GI:308172266" /db_xref="GeneID:9780569" /translation="MMQYSGNTALDIQPHGDSAVIIRFGGQISEEVNSRVHAAAACIE ERPFPGFVECIPAFTSLTIFYDVYAVSNIKKGVSPFALAKKEVIERLSHLKTDRQKER RVMEIPVCYGGDFGPDLEEVAKMNDLTPEDVIRIHTEGEYLVYMLGFAPGFPFLGGMS ERIRAPRKSSPRPSIPAGSVGIAGMQTGVYPISTPGGWQLIGSTPLRLFRPEEHPPSL LRAGDTVKFVRITAEEYSRIKEGAE" misc_feature 416096..416719 /gene="kipI" /locus_tag="BAMF_0375" /note="Allophanate hydrolase subunit 1; Region: AHS1; pfam02682" /db_xref="CDD:145701" misc_feature 416108..416746 /gene="kipI" /locus_tag="BAMF_0375" /note="Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; Region: DUR1; cl00896" /db_xref="CDD:176822" gene 416791..417804 /gene="kipA" /locus_tag="BAMF_0376" /db_xref="GeneID:9779098" CDS 416791..417804 /gene="kipA" /locus_tag="BAMF_0376" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="YP_003918972.1" /db_xref="GI:308172267" /db_xref="GeneID:9779098" /translation="MSMKVVKPGLLTTIQDTGRTGYQKYGVLGSGAMDTISLRIANLL AGNKETEAGLEITLMGPGPSFELSEPAVIAVTGADFAFHINGEPAPLWKPVLVKENSV VSFGPCKMGSRAYLAVAGGFDVPAVMESKSTYVRAGIGGFYGRALQKDDELPLGSMTQ CSEIIAHRLSDSLGQHGFSAPDWSVSSRGFLPLKKNPVIRMLEGAQFHAFTEEAKSRF YKEPFTVTPQSDRMGYRLKGAPLELQEPLEMVSEAVTFGTVQVPPDGNPIILLADRQT TGGYPRMAHIISADLPLAAQTMPGEHITFSAVSLEEAEMLLLEREQQIKELKARLKME WLI" misc_feature 416860..417717 /gene="kipA" /locus_tag="BAMF_0376" /note="Allophanate hydrolase subunit 2; Region: AHS2; cl00865" /db_xref="CDD:176587" misc_feature 416863..417717 /gene="kipA" /locus_tag="BAMF_0376" /note="Allophanate hydrolase subunit 2; Region: AHS2; pfam02626" /db_xref="CDD:145662" gene 417822..418571 /gene="kipR" /locus_tag="BAMF_0377" /db_xref="GeneID:9779097" CDS 417822..418571 /gene="kipR" /locus_tag="BAMF_0377" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_003918973.1" /db_xref="GI:308172268" /db_xref="GeneID:9779097" /translation="MENKNKTVIKSMELLHLFLTEPSLSLNELVSRSEMPKTSVHRMA SSLEEMGFLTRAADGRYQLGLIFLQFGQLVSERLDIRKIAKPIMEELCGEVDEAVQLI MRDGDEAIYVEKIEGTQTVRLFTAIGRRSPLYAGACARSILSFLPREEIDTYLQKTEF AAIASGTMTNPAELLQSIETSLQSGYTISYSELEDYTAAIGAPIFNHEGKVAAGISIA GFEARFSEDRLPYLTEKVKAAAQHISEKLGY" misc_feature 417834..418097 /gene="kipR" /locus_tag="BAMF_0377" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 417837..418568 /gene="kipR" /locus_tag="BAMF_0377" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 418176..418553 /gene="kipR" /locus_tag="BAMF_0377" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 418636..419277 /gene="lipC" /locus_tag="BAMF_0378" /db_xref="GeneID:9779099" CDS 418636..419277 /gene="lipC" /locus_tag="BAMF_0378" /EC_number="3.-.-.-" /function="Lysophospholipase L1 and related esterases" /note="Spore germination lipase lipC;, Esterase, SGNH hydrolase-type, subgroup, GDSL-like Lipase/Acylhydrolase" /codon_start=1 /transl_table=11 /product="spore germination lipase lipC" /protein_id="YP_003918974.1" /db_xref="GI:308172269" /db_xref="GeneID:9779099" /translation="MGLVYTALGDSLTTGRGSGPFSPGFVQRFGCMMAEDLQTRTEVS IFAKSGLETGEILGLMSLPYIQRRIQAADMITITGCGNDLIDSVRAYQQTKDASVFAG VSRHCHENFEKMIAKIAALKETHPSPYEIRVFNLYNPFPGISIAEKWISSYNAHLSTL ASAPHVKIADVHSAFKGKLNEYLSHDRVHPNSRGYEVMACVLRGLGYGSLARS" misc_feature 418648..419232 /gene="lipC" /locus_tag="BAMF_0378" /note="SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely...; Region: SGNH_hydrolase; cl01053" /db_xref="CDD:194020" misc_feature order(418666..418668,418783..418785,418879..418881, 419191..419193,419200..419202) /gene="lipC" /locus_tag="BAMF_0378" /note="active site" /db_xref="CDD:58496" misc_feature order(418666..418668,419191..419193,419200..419202) /gene="lipC" /locus_tag="BAMF_0378" /note="catalytic triad [active]" /db_xref="CDD:58496" misc_feature order(418666..418668,418783..418785,418879..418881) /gene="lipC" /locus_tag="BAMF_0378" /note="oxyanion hole [active]" /db_xref="CDD:58496" gene 419443..419688 /gene="yczI" /locus_tag="BAMF_0379" /db_xref="GeneID:9779140" CDS 419443..419688 /gene="yczI" /locus_tag="BAMF_0379" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918975.1" /db_xref="GI:308172270" /db_xref="GeneID:9779140" /translation="MLRALKLSLAMLIIILAAAAFTYAEHTSVIQPVMLVFLGAVMFI QGLEEKRKENDGSGRFNIYTAVFVWSISLIGFTLHAI" gene complement(419659..419979) /gene="yczJ" /locus_tag="BAMF_0380" /db_xref="GeneID:9780575" CDS complement(419659..419979) /gene="yczJ" /locus_tag="BAMF_0380" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918976.1" /db_xref="GI:308172271" /db_xref="GeneID:9780575" /translation="MIREAAMLHVKEGFEGEFEEAFRRAEPIISGMKGYLSHSLSKCM EKTHKYLLLVEWETLEDHTKGFRGSPEYQEWKALLHRFYSPFPVVEHFEDLSNSDRVK RKTD" misc_feature complement(419692..419979) /gene="yczJ" /locus_tag="BAMF_0380" /note="Antibiotic biosynthesis monooxygenase; Region: ABM; cl10022" /db_xref="CDD:195949" gene 420135..422138 /gene="pbpC" /locus_tag="BAMF_0381" /db_xref="GeneID:9780576" CDS 420135..422138 /gene="pbpC" /locus_tag="BAMF_0381" /function="16.13: Shape16.2: Construct biomass (Anabolism)" /codon_start=1 /transl_table=11 /product="penicillin-binding lipoprotein 3" /protein_id="YP_003918977.1" /db_xref="GI:308172272" /db_xref="GeneID:9780576" /translation="MKKGLYLLLLLAGILGLIGCSKTESAEDRMKDFVKDWNGGHYDK MYQSLTQDEKKKLSKKDFVKRYETIYEQAGVKNLKVTAEKQDEDDKKKDDLQHIDYKV SMDTKAGKVAFENTAVLKKEKTDDGEAWNIDWNPSFIFKQLSDDKTVQIANEEPKRGQ IYDKDGKGLAVNTEVPEIGIIPGKLGKDKDSVIKKLSEKLDLSEDDIKSKLNQGWVKD DSYVPVQKIRPDDESKVKSLLSLDGVTKTTVSSRYYPYGEKAAHLTGYIKTITAEDLK KAKDGQYSDTSKIGIAGLENVYEDKLRGTTGWKIYVPQTGEVIAEKKAKNGQDIHVTI DMKTQTKLYDSMKDDSGAAVALEPQTGETLALVSAPSYDPNGFIFGWNSKEWKKLNED KNNPFSAKFNKLYAPGSTIKPIAAAVGLTNGTLKASEKKKITGKEWQKDSSWGGYHVT RVSERLNEVDLENALITSDNIYFAQNAIDAGADAFTKGLKSFGFDEDIPYQFPIEKSS IANGKLDSEILLGDTGYGQGQMLMSPLHLAADYTAFVTDGNLVKPTLIKDGEKTPQIW HKQVVSKANAEEITKGLRGVVEDPRGSAYQPVVSGINVAGKTGTAELKTSKEDKDGKE NGWFVGYDYKKKDLLIAMMIQDVKKRGGSHYVVEKAKQQFQNR" misc_feature 420204..420575 /gene="pbpC" /locus_tag="BAMF_0381" /note="NTF2-like N-terminal transpeptidase domain; Region: MecA_N; pfam05223" /db_xref="CDD:147427" misc_feature 420552..422069 /gene="pbpC" /locus_tag="BAMF_0381" /note="penicillin-binding protein 2; Region: pbp2_mrdA; TIGR03423" /db_xref="CDD:188321" misc_feature 420597..421100 /gene="pbpC" /locus_tag="BAMF_0381" /note="Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717" /db_xref="CDD:190723" misc_feature 421185..422129 /gene="pbpC" /locus_tag="BAMF_0381" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene 422253..423155 /gene="ycsN" /locus_tag="BAMF_0382" /db_xref="GeneID:9779450" CDS 422253..423155 /gene="ycsN" /locus_tag="BAMF_0382" /EC_number="1.1.1.-" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="YP_003918978.1" /db_xref="GI:308172273" /db_xref="GeneID:9779450" /translation="MQRIQLAEDLEFSRVIHGLWRLNEWNYSDGELLNLIEWCISQGI TTFDHADIYGSYTCEKLFGGALSLSPSIRERIEIVTKCGIVIESPERPGNKSHHYNTS KSHILASAEQSLLNLNTDYLDVLLIHRQDPLMDPEAVAEAFHALKSSGKVRYFGVSNF KAHQYRMLESYLDEPLITNQIEISAYELEHFHDGTLDFCQEKRIPPMAWSPLAGGSVF TGQSDKDVRIRTALISVQEEIGAASIDEVMYAWLFTHPADIMPIVGSGKQNRISAAVR ASAYKLSHDQWFRIYTAVQGYDIP" misc_feature 422277..423131 /gene="ycsN" /locus_tag="BAMF_0382" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature 422292..423122 /gene="ycsN" /locus_tag="BAMF_0382" /note="Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248" /db_xref="CDD:189468" misc_feature order(422304..422312,422394..422396,422409..422411, 422493..422495,422634..422639,422724..422729, 422790..422792,422877..422894,422985..422987, 423036..423047,423060..423062,423069..423074) /gene="ycsN" /locus_tag="BAMF_0382" /note="active site" /db_xref="CDD:119408" misc_feature order(422394..422396,422409..422411,422493..422495, 422634..422636) /gene="ycsN" /locus_tag="BAMF_0382" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene 423457..425541 /gene="mtlR" /locus_tag="BAMF_0383" /db_xref="GeneID:9780570" CDS 423457..425541 /gene="mtlR" /locus_tag="BAMF_0383" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_003918979.1" /db_xref="GI:308172274" /db_xref="GeneID:9780570" /translation="MYMTAREQKLMKHLLLQNRYETVHELAEALQVSTRTVHRELKTI KPMMKSFGLALDKQPGKGLKAVGKPEDKQKLLSELSYEQQEYSAEERKLLILCSLLES QEPIKLYSLANELQVTNATISYDLDELETWIAPFGLTLIRKRGFGIQLTGPENAKRKI VGNLMVNRLDIQTFLEAVEFNIKGKPDAAEKMFGVVNKAELLKMDRLLIQLKEKIAIA LSDSSYMALAVHLTFAMDRIRLGETITMEASELKALQQTKEYGSALEMAKELEKAFGV SIPEAEIGYITIHLRSANRKYKTEFKPENIEVETALQTKQLIGFISEKIKIDLTENGS LYDGLIAHLEPAINRVKESIDMYNPMTEQIKRDYFLLYMAVEEGMEKFFPGLRFPDDE IAFIVLHFGSALEIKREEAKIKALIVCSSGIGSSKMLASRLKKELPEIRSFDMSSLIE LKNRDTSAYDMIVSTVPIPYENIDYVMVSPLLNEEDADQVKQYIKRKIPLILDKKRNS KREEKQPETPDMLEAAGRMAHYAAVIQSVLRNFSIKSIDSHMAYELFLNHLFGVLEQE GFVRHAKKTAQLLTEREEQGGLGIPGTAMALYHLKNEEIVTPFFKIYDLTAPCSVKGM DGNSLTVDRALVMMAPADMPAEGSEILSAVSSAIIESEASIKAFQTEDEADLYKRLNR LFYHFIQEKGQR" misc_feature 423460..424968 /gene="mtlR" /locus_tag="BAMF_0383" /note="Transcriptional antiterminator [Transcription]; Region: BglG; COG3711" /db_xref="CDD:33506" misc_feature 423472..423642 /gene="mtlR" /locus_tag="BAMF_0383" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 424072..424326 /gene="mtlR" /locus_tag="BAMF_0383" /note="PRD domain; Region: PRD; pfam00874" /db_xref="CDD:189750" misc_feature 424399..424656 /gene="mtlR" /locus_tag="BAMF_0383" /note="PRD domain; Region: PRD; pfam00874" /db_xref="CDD:189750" misc_feature 424693..424947 /gene="mtlR" /locus_tag="BAMF_0383" /note="PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved...; Region: PTS_IIB_bgl_like; cd05568" /db_xref="CDD:99910" misc_feature order(424711..424722,424726..424734) /gene="mtlR" /locus_tag="BAMF_0383" /note="P-loop; other site" /db_xref="CDD:99910" misc_feature order(424711..424713,424717..424722,424729..424734) /gene="mtlR" /locus_tag="BAMF_0383" /note="active site" /db_xref="CDD:99910" misc_feature 424711..424713 /gene="mtlR" /locus_tag="BAMF_0383" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99910" gene 425762..427276 /gene="ydaB" /locus_tag="BAMF_0384" /db_xref="GeneID:9779294" CDS 425762..427276 /gene="ydaB" /locus_tag="BAMF_0384" /EC_number="6.2.1.-" /codon_start=1 /transl_table=11 /product="acyl-CoA ligase" /protein_id="YP_003918980.1" /db_xref="GI:308172275" /db_xref="GeneID:9779294" /translation="MKTLQHLILHDISNSEEIEAVKSGAHTLTYAEYRKRINQLAQAL LDKGIKKGDRVAMLCKNGHASSIVMFAALEIGAVVVPVSWQLTPYEMKGILAACEPKA VFYGTEFKEIMEEVLPALESSLKLKVVTGTAVETTPEFDALLTGSGDTPDVETVSEND TALLMFTSGTTGNPKRCMVTHGGIYNYVNATLAYTGRMQHVRFLACHPNYHTSAIICQ MVGTMSGTTFVMTDNQDPLENLKLIEKEKIQTVMALPVYYTYLLKAWETHQTDISSIV YMMTGGTKVPSSLIQQYQDIGIPLMHGYGSTEAWGISSWNPQMGMDKAASAGKPMEEV DVRVVDPETGEVLPQGSIGEVVVTSPFLFKGYEGNEEATRKVLKDGWFHTGDSGYVDE DGFIFITGRYKDVIIYGGDNIYPDQIEEVIQQVPGILETAVVGIPDPLYGEKPKAFIV TNGREGLTEEEVTRFLQERLAAFKIPEIEFVSELPKNNLGKVKKDVLRKQAVRS" misc_feature 425768..427261 /gene="ydaB" /locus_tag="BAMF_0384" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature 425837..427261 /gene="ydaB" /locus_tag="BAMF_0384" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 427503..428297 /gene="ydaD" /locus_tag="BAMF_0385" /db_xref="GeneID:9780578" CDS 427503..428297 /gene="ydaD" /locus_tag="BAMF_0385" /EC_number="1.1.1.-" /function="16.8: Protect16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="dehydrogenase" /protein_id="YP_003918981.1" /db_xref="GI:308172276" /db_xref="GeneID:9780578" /translation="MKPAPVYEYKEYKGADKLKGKTALITGGDSGIGRAVAVAYAKEG ANVAIVYFDEHGDAEDTKKRVEEEGVKCLLISGDVGEEDFCNEAVEKTVEEFGRLDIL VNNAAEQHPKESIKDITSEQFHRTFKTNFYSQFYLTKKAIDYMKLGSAIINTTSINPY RGNPQLIDYTATKGAINGFTRSMAQALVKDGIRVNAVAPGPIWTPLIPATFSGETVAS FGQDTPMGRAGQPVEHVGCYVLLASDESSYMTGQTLHVNGGGFVTT" misc_feature 427503..428294 /gene="ydaD" /locus_tag="BAMF_0385" /note="short chain dehydrogenase; Provisional; Region: PRK06701" /db_xref="CDD:180661" misc_feature 427503..428279 /gene="ydaD" /locus_tag="BAMF_0385" /note="classical (c) SDR, subgroup 1; Region: SDR_c1; cd05355" /db_xref="CDD:187613" misc_feature order(427581..427583,427587..427598,427653..427658, 427662..427664,427731..427739,427815..427826, 427887..427889,427902..427904,427962..427970, 428007..428009,428019..428021,428097..428108, 428112..428123,428157..428159) /gene="ydaD" /locus_tag="BAMF_0385" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187613" misc_feature order(427587..427592,427662..427664) /gene="ydaD" /locus_tag="BAMF_0385" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:187613" misc_feature order(427890..427892,427968..427970,428007..428009, 428019..428021) /gene="ydaD" /locus_tag="BAMF_0385" /note="active site" /db_xref="CDD:187613" gene 428310..428813 /gene="ydaE" /locus_tag="BAMF_0386" /db_xref="GeneID:9780579" CDS 428310..428813 /gene="ydaE" /locus_tag="BAMF_0386" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918982.1" /db_xref="GI:308172277" /db_xref="GeneID:9780579" /translation="MTISKHDVNAYYQKAGIVLTDDEVEDIQIMDYGLGKLQETGLQL FIYVNTDRYCSKELVLFPRQTCPEHRHPPVSGEKGKQETFRCRWGKVYLYVEGEKTEH PSVLPPEEDKEYYTVWHEIVLEPGGQYTIPPDTKHWFQAGEEGAVITEMSSTSTDDHD IFTDPRI" misc_feature 428328..428810 /gene="ydaE" /locus_tag="BAMF_0386" /note="Protein of unknown function (DUF1498); Region: DUF1498; cl01576" /db_xref="CDD:194167" gene 428901..429524 /gene="ydaF" /locus_tag="BAMF_0387" /db_xref="GeneID:9780580" CDS 428901..429524 /gene="ydaF" /locus_tag="BAMF_0387" /function="16.6: Maintain" /codon_start=1 /transl_table=11 /product="ribosomal protein N-acetyltransferase" /protein_id="YP_003918983.1" /db_xref="GI:308172278" /db_xref="GeneID:9780580" /translation="MFSCQIREHLTIRLLAKEDTDELYSVIKRNQNHLSEWLSWAEEL ADIDTYRDVIIPEWRYKYAEENGFDAGIFVKGRFCGMISIHNVDAANQKADIGYWLDQ EHEGFGIITASCRAVISHAFQDLGLNRIMISAAEKNTKSRAVAERLGFQKEGLTREGI FVQGAYHDAVNYSMLKREWSEDRQKSTFLGLNVSPMWKSNSGDVKKE" misc_feature 428901..429449 /gene="ydaF" /locus_tag="BAMF_0387" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" misc_feature 428916..429404 /gene="ydaF" /locus_tag="BAMF_0387" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene 429531..429953 /gene="ydaG" /locus_tag="BAMF_0388" /db_xref="GeneID:9780581" CDS 429531..429953 /gene="ydaG" /locus_tag="BAMF_0388" /function="16.8: Protect" /codon_start=1 /transl_table=11 /product="general stress protein" /protein_id="YP_003918984.1" /db_xref="GI:308172279" /db_xref="GeneID:9780581" /translation="MNQNEIKQKVLEVLDHHKVGSLATVEQGNPHSRYMTFFHDGLTI YTPTSKDTHKAEEIENNPNVHILLGYDCEGFGDAYVEVAGTAKVNNSADLKEKLWDPK LERWFDGKDDPNLVILEIEPKQIKLMNAGEKTPAELEL" misc_feature 429531..429950 /gene="ydaG" /locus_tag="BAMF_0388" /note="Uncharacterized stress protein (general stress protein 26) [General function prediction only]; Region: COG3871" /db_xref="CDD:33661" misc_feature 429549..429794 /gene="ydaG" /locus_tag="BAMF_0388" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" gene 430453..431262 /gene="ydaH" /locus_tag="BAMF_0389" /db_xref="GeneID:9780582" CDS 430453..431262 /gene="ydaH" /locus_tag="BAMF_0389" /codon_start=1 /transl_table=11 /product="integral inner membrane protein" /protein_id="YP_003918985.1" /db_xref="GI:308172280" /db_xref="GeneID:9780582" /translation="MHVITSQVLFIFCFLLLIHSIETLAYATRLSGARVGFIASALSL FNVMVIVSRMSNMVQQPFTGHLIDAAGSNALSVVSAQFRFLIFGSTVGTMLGICLLPT FVALFTRAIIHLADGGGSVMQVFKKGFSLNGLKQARSYIRLPSVSYLKGLQFRMIPKR LFVINMVITSIYTIGVLSALYAGLLAPEHSTTAVMASGLINGVATMLLAVFVDPKVSV LADDVAKGKRSYVSLKWTSLTMVTSRVAGTLLAQLVFIPGAYYIAWVTNWL" misc_feature 430492..431250 /gene="ydaH" /locus_tag="BAMF_0389" /note="Protein of unknown function (DUF2837); Region: DUF2837; pfam10997" /db_xref="CDD:151444" gene complement(431303..431593) /gene="ydzA" /locus_tag="BAMF_0390" /db_xref="GeneID:9780583" CDS complement(431303..431593) /gene="ydzA" /locus_tag="BAMF_0390" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918986.1" /db_xref="GI:308172281" /db_xref="GeneID:9780583" /translation="MLHTPIGRLRTMGFIEGMSLLVLLFIAMPLKYWAHHPLAVTIAG SIHGGLFIIYLAVLAYAAFTVKWHVKWSAAGFIAAFIPFGNFIYDRGLRNYK" misc_feature complement(<431381..431584) /gene="ydzA" /locus_tag="BAMF_0390" /note="Domain of unknown function (DUF3817); Region: DUF3817; cl14844" /db_xref="CDD:196836" gene 431767..432201 /gene="lrpC" /locus_tag="BAMF_0391" /db_xref="GeneID:9780653" CDS 431767..432201 /gene="lrpC" /locus_tag="BAMF_0391" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="Lrp/AsnC family transcriptional regulator" /protein_id="YP_003918987.1" /db_xref="GI:308172282" /db_xref="GeneID:9780653" /translation="MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLE SFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQFKTYIQSIPNIEFCFRVAGAAC YMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD" misc_feature 431773..432093 /gene="lrpC" /locus_tag="BAMF_0391" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 432266..434452 /gene="topB" /locus_tag="BAMF_0392" /db_xref="GeneID:9779150" CDS 432266..434452 /gene="topB" /locus_tag="BAMF_0392" /EC_number="5.99.1.2" /function="16.9: Replicate16.2: Construct biomass (Anabolism)16.6: Maintain" /codon_start=1 /transl_table=11 /product="DNA topoisomerase III" /protein_id="YP_003918988.1" /db_xref="GI:308172283" /db_xref="GeneID:9779150" /translation="MSKTVVLAEKPSVGRDLARVLKCHKKGNGYLEGDRYIVTWALGH LVTLADPEGYGKEYQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKAQLIRKDVSEIVI ATDAGREGELVARWIIEKANVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYHSA VARAEADWIVGINATRALTTKFNAQLSCGRVQTPTLAMIAKREADIQAFTPVPYYGLR AAADQMTLTWQDKKTKQTRTFDQTVTGRLAKDLQGKPAVISELKKTAKKSFAPGLYDL TELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTDSRFLSADIVPTLKDRLNGME VKPYAQYVNQILKRGVKAHKGFVNDAKVSDHHAIIPTEEPLILSSLSDKERKLYDLIA KRFLAVLMPAFEYEETKVTADIGGETFTAKGKTVQSPGWKAVYDMYEDDDDHEEDKDQ TLPALQQGQRLSVSSLKETSGQTKPPARFNEGTLLSAMENPSAFMQGEEKNLVKTLGE TGGLGTVATRADIIEKLFNSFLIEKKEKDIFITSKGKQLLQLVPEDLKSPALTAEWEQ KLSSIAAGKLKSAVFIKDMKSYAGKTVKEIKNSSQTFRHDNISGTACPDCGKMMLKVN GKRGTMLVCQDRECGSRKTVARKTNARCPNCHKKMELRGQGEGQTFACVCGHREKLSV FEKRKAKDKSGRASKRDINSYMKKQNNDEPMNNALAEQLKKLGLDK" misc_feature 432272..434239 /gene="topB" /locus_tag="BAMF_0392" /note="DNA topoisomerase III; Provisional; Region: PRK07726" /db_xref="CDD:181093" misc_feature 432272..432706 /gene="topB" /locus_tag="BAMF_0392" /note="TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by:...; Region: TOPRIM_TopoIA_TopoIII; cd03362" /db_xref="CDD:173782" misc_feature order(432290..432295,432302..432304,432578..432580, 432584..432586,432590..432592) /gene="topB" /locus_tag="BAMF_0392" /note="active site" /db_xref="CDD:173782" misc_feature order(432311..432313,432581..432583,432587..432589, 432608..432613,432617..432622) /gene="topB" /locus_tag="BAMF_0392" /note="putative interdomain interaction site [polypeptide binding]; other site" /db_xref="CDD:173782" misc_feature order(432578..432580,432584..432586) /gene="topB" /locus_tag="BAMF_0392" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173782" misc_feature 432587..432589 /gene="topB" /locus_tag="BAMF_0392" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173782" misc_feature 432725..434023 /gene="topB" /locus_tag="BAMF_0392" /note="DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded...; Region: TOP1Ac; cd00186" /db_xref="CDD:73184" misc_feature order(432725..432808,432821..432883) /gene="topB" /locus_tag="BAMF_0392" /note="domain I; other site" /db_xref="CDD:73184" misc_feature order(432752..432757,432764..432766,432776..432778, 432788..432790,433160..433162,433172..433174, 433199..433201,433811..433816,433823..433828, 433832..433834,433844..433849) /gene="topB" /locus_tag="BAMF_0392" /note="DNA binding groove [nucleotide binding]" /db_xref="CDD:73184" misc_feature order(432854..432856,432866..432868,433919..433921) /gene="topB" /locus_tag="BAMF_0392" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73184" misc_feature order(432896..432916,433025..433072,433466..433510, 433514..433570,433655..433687) /gene="topB" /locus_tag="BAMF_0392" /note="domain II; other site" /db_xref="CDD:73184" misc_feature order(433073..433093,433097..433180,433184..433267, 433355..433381,433403..433465) /gene="topB" /locus_tag="BAMF_0392" /note="domain III; other site" /db_xref="CDD:73184" misc_feature order(433106..433108,433118..433126,433358..433360, 433421..433423,433430..433432,433442..433444, 433805..433807,433811..433813,433877..433879) /gene="topB" /locus_tag="BAMF_0392" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:73184" misc_feature order(433193..433195,433199..433201,433358..433360) /gene="topB" /locus_tag="BAMF_0392" /note="catalytic site [active]" /db_xref="CDD:73184" misc_feature order(433688..433738,433796..433867,433877..433921, 433928..434023) /gene="topB" /locus_tag="BAMF_0392" /note="domain IV; other site" /db_xref="CDD:73184" misc_feature 434078..434449 /gene="topB" /locus_tag="BAMF_0392" /note="Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]; Region: TopA; COG0551" /db_xref="CDD:30897" gene 434481..434651 /locus_tag="BAMF_0393" /db_xref="GeneID:9780316" CDS 434481..434651 /locus_tag="BAMF_0393" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918989.1" /db_xref="GI:308172284" /db_xref="GeneID:9780316" /translation="MLPFVVFFTVLGIQSIQRGKRGAGGAPIFKIYQCEKMLVFFDRF LYSKNTLWKNKI" gene 434688..435773 /gene="ydaJ" /locus_tag="BAMF_0394" /db_xref="GeneID:9777902" CDS 434688..435773 /gene="ydaJ" /locus_tag="BAMF_0394" /function="16.5: Explore" /codon_start=1 /transl_table=11 /product="glycosyl hydrolase lipoprotein" /protein_id="YP_003918990.1" /db_xref="GI:308172285" /db_xref="GeneID:9777902" /translation="MKRFGFSLMILLISIVLTAGCTEAGIEKQTAVEPSEPLQPAEHF IYHKLMNGRGMIKTNISGEPEYLSESLGLWMEFLLSRKDERQFQAQYQLLTDSFLMKN GLVSWKIDRNKASGTNALIDDFRIMGCLNEAASLWGNSEYGKTAVQIGKALEKYNTND GYFTDYYDAASHAASKTVTLSYVSPGALQMLREQGIIDEKTENRNLDVLNLAPLKNGF LPKSFNTETKEYKYDSEVNVIDQLYAAVNLKRGDDKAAALSKWIINEFKSRGQLYGRY SADTKEPAVQYESPSVYALAVLFLTEQKADPAVIKPLYERMTSFETLETLKPDYGGYM SGGDTHSFDNLLPLLAERKLFNENIIQ" gene 435754..436602 /gene="ydaK" /locus_tag="BAMF_0395" /db_xref="GeneID:9780584" CDS 435754..436602 /gene="ydaK" /locus_tag="BAMF_0395" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_003918991.1" /db_xref="GI:308172286" /db_xref="GeneID:9780584" /translation="MKISFNESQKLCSYTAVMTVLLSFFIYYVSQQSSGLLMTCITLL VAGAGLWFGAIYALVITLLVLFVLGSLLLWFQTGSFMASAGAEGLQMLVVWGIALLLF SYMSGRIHDLAKGLDRSVKQLREEITSFVAVDRVTGFDNHLRMKLELSEEIKRAERYG NSFVFLLLHMHYFKEFKSLYGEKETDRLLAFISRQIRSSVRETDKKFRPSAERFGIVL THTPEENMPAVLAKLKKELDTYRLQNGKYVSITFRVCYLAYRKDLKTADQFLNELENE MMMNEL" misc_feature 436153..>436509 /gene="ydaK" /locus_tag="BAMF_0395" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(436258..436260,436387..436389) /gene="ydaK" /locus_tag="BAMF_0395" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(436273..436275,436282..436287,436297..436299, 436309..436311,436375..436377,436381..436392) /gene="ydaK" /locus_tag="BAMF_0395" /note="active site" /db_xref="CDD:143635" misc_feature order(436363..436365,436447..436449) /gene="ydaK" /locus_tag="BAMF_0395" /note="I-site; other site" /db_xref="CDD:143635" gene 436592..438316 /gene="ydaL" /locus_tag="BAMF_0396" /db_xref="GeneID:9780585" CDS 436592..438316 /gene="ydaL" /locus_tag="BAMF_0396" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918992.1" /db_xref="GI:308172287" /db_xref="GeneID:9780585" /translation="MNSKWICLLLAALFMVSAVYVPRTAEAKDKKDGILIIYTSTDGE ETAEVKMLDLIAGHFSSAVTVKSDGDITAADLKKNRRVIYYGVTKKKLSNHFVSLISS MPQQLISIGYNAGQFRQFTGLSLTEKETVYRIYGKKEKTDMPLEKGMSVLGVSGVKGE PLYTYRSGDGSTRPFIWKTARSDCYFGVTSLLNDSFLTAKELRKAFGESEGSTLLYLR LEDISPMSDETLLYQAGAYLHKRHIPFILAVIPVYLNPENGEKVYLADKPKMVSVLKK LQQMGGSIIIHGYTHAYRYSETGEGFEFWDAKADQPITSENADDTPVKLEKEQDFPNE KAYRAYVKPFREKEKIYTGTKLEQAIDDLTELGLYPLSFEAPHYTMSEEGYKIASSYF SSIFGQVQLSGTTWKTSGAPPFVTKPAMLDGMTLYPETIGFADNSKENPLGDMENRIS RMIDFGGGVAGGFYHPYLGMKYLPELVNQKRIPGGEWLDLKKTKQTVTSASVRIKTDG DGTIHVENKIHPITAFFNHHQQTPLEKALWILSGVVLLFIIMFVCYVLYLRATLKKRI FKERRSLE" misc_feature 436613..438307 /gene="ydaL" /locus_tag="BAMF_0396" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5298" /db_xref="CDD:34889" misc_feature 437237..438028 /gene="ydaL" /locus_tag="BAMF_0396" /note="Uncharacterized protein conserved in bacteria (DUF2334); Region: DUF2334; pfam10096" /db_xref="CDD:150736" gene 438309..439571 /gene="ydaM" /locus_tag="BAMF_0397" /db_xref="GeneID:9780586" CDS 438309..439571 /gene="ydaM" /locus_tag="BAMF_0397" /EC_number="2.4.-.-" /codon_start=1 /transl_table=11 /product="glycosyltransferase" /protein_id="YP_003918993.1" /db_xref="GI:308172288" /db_xref="GeneID:9780586" /translation="MSNILFFISLSLIWVMLLYHMFLMQGGFRHYMTFERNIPKWRAK MGELPKVSVLIPAHNEEVVLRQTLKAMVNLYYPKDRLEVIVVNDNSSDRTGDIVEEFS RQYDFIKMVITKPPHAGKRKSSALNSGFAESNGDVICVYDADNTPEKMAVYYLVLGLM NDEKAGAVVGKFRVINAAKTLLTKFINIETICFQWMAQGGRWKWFKIATIPGTNFAIR RSIIEKLGGWDDKALAEDTELTIRVYNLGYHIRFFPAAVTWEQEPETWKVWWRQRTRW ARGNQYVVLKFLSQFFKLKRKRIIFDLFYFFFTYFLFFFGMIMSNTIFIINLFYDLHL AVGFLAMILWILAFFLFMTEVMITLSIEKTEMNKQNFFIVFLMYFTYSQAWIVLVIWS LFTEIKHRLFKQEVKWYKTERYNQNKSG" misc_feature 438309..439532 /gene="ydaM" /locus_tag="BAMF_0397" /note="Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: COG1215" /db_xref="CDD:31408" misc_feature 438465..439016 /gene="ydaM" /locus_tag="BAMF_0397" /note="CESA_like is the cellulose synthase superfamily; Region: CESA_like; cd06423" /db_xref="CDD:133045" misc_feature 438732..438740 /gene="ydaM" /locus_tag="BAMF_0397" /note="DXD motif; other site" /db_xref="CDD:133045" gene 439577..441697 /gene="ydaN" /locus_tag="BAMF_0398" /db_xref="GeneID:9780587" CDS 439577..441697 /gene="ydaN" /locus_tag="BAMF_0398" /codon_start=1 /transl_table=11 /product="regulator" /protein_id="YP_003918994.1" /db_xref="GI:308172289" /db_xref="GeneID:9780587" /translation="MKKAIILITGLLLLMYNGQKAAAQELKTDGSALGKSAGAKEQQA LTGDLMTLYGAKDSSELTYQIPAGASDANQSLLIDYEASNLLIAPSSLTIAIDNEPVK SIKLDGSSKRKTVKLNLSKSQSAQGYHNVSLQFYGVLKEGVCVRQDTSGNWIKIYPDS RLMLSEASKSKGADLSHFPYPFAQSGNTGEETDIILPDKPTSAEAEAAVKTEGFLKTA DSRLKVSYVKESDAGKISNPSIVIGAGHHWNGKIKQLIERGNIKAEGNKLLLAERVLT AGDKRQPVLFVTAQSDKTLADKIRVITDSAYSGQLSGDSLMIGRLQPAAEKTGNKLTL DDFGAGNVTVGSNKTASEHFFYPAAAAVDKDGQVKLSLTLKTSESVRTKTDSKDVDAE RAELNVMVNGQPNAVHLDDLGNKDKDGFYHVTIPIDPKLLRSSRYIDLQFVTSGLKNN NPCIDRDENKWVYIDKSSTLTYPVSGATQKPDFGQWPLPFAGDVKKKTVIVIPDNVNM QTLKELSLVTDSFGNGARQAYTVKTASDMKEADAKGRNVVFIGGLPQIPLLKSNASKL LVPSDRSGAYDVSSFQMLNETTKQIAFTQESPWDSGSGIAVFAPLSGSGAAVTKELIS FLDSSSEAATVINETGSKQLFSNHQQIKSDDSSPSADTKNPSAAPNVTYIAVFAALIL IAAGLIWLTARRKKRKTGNEKSEE" misc_feature 439577..>440200 /gene="ydaN" /locus_tag="BAMF_0398" /note="cellulose synthase regulator protein; Provisional; Region: PRK11114" /db_xref="CDD:182973" misc_feature 440747..>441142 /gene="ydaN" /locus_tag="BAMF_0398" /note="cellulose synthase regulator protein; Provisional; Region: PRK11114" /db_xref="CDD:182973" gene 442135..443955 /gene="ydaO" /locus_tag="BAMF_0399" /db_xref="GeneID:9780588" CDS 442135..443955 /gene="ydaO" /locus_tag="BAMF_0399" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="metabolite transporter" /protein_id="YP_003918995.1" /db_xref="GI:308172290" /db_xref="GeneID:9780588" /translation="MYHSIKRFLIGKPLKSQAAGEQKLTKLKALAMLSSDALSSVAYG TEQILIILATVSAAAFWYSIPIACGVLILLLALILSYRQIIYAYPQGGGAYMVSKENL GEKPGLIAGGSLLVDYILTVAVSISAGTDAITSAFPALHPYHLFIAVLLVILIMILNL RGLSESASILAYPVYLFVAALVLLIGVGLFKLMTGQVHPAEHTPIGTPVAGITLFLLL KAFSSGCSALTGVEAISNAIPAFKNPPAKNAARTLAMMGILLAILFTGITVLAYGYGT GPKPDETVISQIAAETFGRNTVYYFIQGVTSLILVLAANTGFSAFPQLAFNLARDQYM PRMFTVRGDRLGFSNGIIFLGIASILLILLFGGRTEHLIPLYAVGVFIPFTLSQTGMC IKWIRQKPKGWAVKMLINSCGAAISFMVLCILFATKFNLVWPVLLFMPAVVMLFFVIK NHYTAVGEQLRVVDQQPEEIKGTVVIVPVAGVTTVVQKSIQYAKSLSDQVIAVHVSFD RENEKKVEKRWEELDNGVRLVTLHSSYRSLVHPFDKFLETVEQKARKEQFSVMVLFPQ FITKKRWQTILHNQSAFLLRVRLFWKKDIIVATLPYHFKK" misc_feature 442276..443493 /gene="ydaO" /locus_tag="BAMF_0399" /note="Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:30877" gene 444085..445806 /gene="ydaP" /locus_tag="BAMF_0400" /db_xref="GeneID:9780589" CDS 444085..445806 /gene="ydaP" /locus_tag="BAMF_0400" /function="16.11: Scavenge (Catabolism)16.6: Maintain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918996.1" /db_xref="GI:308172291" /db_xref="GeneID:9780589" /translation="MPSKTAGHVMTELLEQWGVGHIYGIPGDSINEFIEELRHERNNL TFIQTRHEEVAALAAAAEAKLTGQIGVCLSIAGPGAVHLLNGLYDAKADGVPVLAIAG QVASDEIGRDSFQEIKLEQMFEDVAVFNQQVHTAEALPDLLNQAIRTAYSKKGVAVLT VSDDLFAQKIKREPVYTSPIYLKADIEPKKEHLVTCAQYINNAKKPVILAGQGLKSAK EELLAFADKAAAPIVITLPAKGVVPDSHPHFLGNLGQIGTKPAYEAMEECDLLIMLGT SFPYRDYLPDDTPAIQLDSDPAKIGKRYPVNAGIVSDAALGLKELTEYIEYKDDRRFL EACTEHMKHWWKEIEKDETEATHPLRPQQVIARLRDAAAEDAVLSVDVGTVTVWMARH FKMKKQDFIVSSWLATMGCGLPGAIAASLAEPGRQSIAICGDGGFSMVMQDLPTAVKY KLPITVIILNNENLGMIEYEQRVKGNIDYVTQLQNVDYAAFAESCGAKGIKVTKHEEL APAFHEALNSNEPVVIDAVIGDEPPLPGKITYGQAKGFSKYMLKNFFENQKIEMPSLK KSLKRLF" misc_feature 444085..445803 /gene="ydaP" /locus_tag="BAMF_0400" /note="pyruvate oxidase; Provisional; Region: PRK08611" /db_xref="CDD:181502" misc_feature 444097..444591 /gene="ydaP" /locus_tag="BAMF_0400" /note="Pyrimidine (PYR) binding domain of POX; Region: TPP_PYR_POX; cd07039" /db_xref="CDD:132922" misc_feature order(444145..444147,444160..444162,444166..444168, 444175..444177,444184..444189,444226..444237, 444244..444246,444256..444258,444265..444270, 444274..444279,444316..444318,444325..444327, 444337..444339,444346..444351,444358..444363, 444583..444585) /gene="ydaP" /locus_tag="BAMF_0400" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132922" misc_feature order(444160..444162,444166..444168,444175..444177, 444184..444189,444226..444237,444241..444243, 444316..444318,444325..444330,444337..444339, 444346..444348,444436..444438,444442..444444, 444448..444450,444472..444474,444517..444519, 444526..444528,444583..444585) /gene="ydaP" /locus_tag="BAMF_0400" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:132922" misc_feature order(444160..444162,444166..444168,444175..444177, 444184..444189,444226..444237,444241..444243, 444316..444318,444325..444330,444337..444339, 444346..444348,444448..444450,444583..444585) /gene="ydaP" /locus_tag="BAMF_0400" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132922" misc_feature order(444160..444162,444238..444240,444307..444309, 444328..444330) /gene="ydaP" /locus_tag="BAMF_0400" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132922" misc_feature 444673..445047 /gene="ydaP" /locus_tag="BAMF_0400" /note="Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205" /db_xref="CDD:189448" misc_feature 445156..445686 /gene="ydaP" /locus_tag="BAMF_0400" /note="Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX...; Region: TPP_POX; cd02014" /db_xref="CDD:48177" misc_feature order(445234..445236,445303..445305,445309..445311, 445384..445392,445465..445467,445471..445473, 445477..445482) /gene="ydaP" /locus_tag="BAMF_0400" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48177" gene complement(445945..446382) /gene="RBAM_004570" /locus_tag="BAMF_0401" /db_xref="GeneID:9780590" CDS complement(445945..446382) /gene="RBAM_004570" /locus_tag="BAMF_0401" /function="Histone acetyltransferase HPA2 and related acetyltransferases" /note="Uncharacterized N-acetyltransferase yhfO;, GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918997.1" /db_xref="GI:308172292" /db_xref="GeneID:9780590" /translation="MIIRSAEPYDINQLTDLMYLYIVDFYKRPKPPIEHIHNLIEMLF EKNSGIQFVAEQDGKLIGFATLYFSFSTTKADKITVMNDLFVAENARGTGAAQELFKR CESFTKENGYAHMSWITAADNYRAQRFYKKMGGSLGDWLNYTI" misc_feature complement(445981..446382) /gene="RBAM_004570" /locus_tag="BAMF_0401" /note="Acetyltransferases [General function prediction only]; Region: RimI; COG0456" /db_xref="CDD:30804" misc_feature complement(446038..446229) /gene="RBAM_004570" /locus_tag="BAMF_0401" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(446092..446097,446125..446133)) /gene="RBAM_004570" /locus_tag="BAMF_0401" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 446632..446874 /gene="xlyB1" /locus_tag="BAMF_0402" /db_xref="GeneID:9779699" CDS 446632..446874 /gene="xlyB1" /locus_tag="BAMF_0402" /note="Uncharacterized metalloprotease yebA;, Peptidoglycan-binding Lysin subgroup, LysM domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918998.1" /db_xref="GI:308172293" /db_xref="GeneID:9779699" /translation="MKDHLISKNGKKTGGATYTIKKGDGLSVIAQKTGVSMATLQSLN GIKDPNLIKVGQVLKLTGSAGNKRQEIILHVAARRF" misc_feature 446680..446814 /gene="xlyB1" /locus_tag="BAMF_0402" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature order(446683..446685,446692..446694,446701..446703, 446716..446718,446725..446727) /gene="xlyB1" /locus_tag="BAMF_0402" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" gene 447332..448198 /locus_tag="BAMF_0403" /db_xref="GeneID:9780416" CDS 447332..448198 /locus_tag="BAMF_0403" /function="Uncharacterized distant relative of cell wall-associated hydrolases" /note="COG: Uncharacterized distant relative of cell wall-associated hydrolases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003918999.1" /db_xref="GI:308172294" /db_xref="GeneID:9780416" /translation="MSRFCDIIHSIEKIKISRIIQKRCLQTLFSSYILEKKEKLFNSG KSAHAEGFPQLTNEKVQTEIQEMKDAGMTSEEVQKFYEMSKEEYAYVQEHAEDLYKDS QKEIKELKASGQIDEVLPKYEEPEYQHKNQIAAKALGTKGDVLTSYEINSGSWSIGVG HAAIVSTNKSKTVEAWAKSWSPINQDGVRRYNNNWGSKKKVYGLWVKKSNNNKYINAA KYAEKQADNKKKYNFNFFNKKTTAKFYCSQLAWRSWKNQGIDIDNVKWDTVVTPMELV KSNNTTIFYHKG" misc_feature <447773..448186 /locus_tag="BAMF_0403" /note="Orthopoxvirus protein of unknown function (DUF830); Region: DUF830; cl13998" /db_xref="CDD:187210" gene 448258..449154 /gene="RBAM_004590" /locus_tag="BAMF_0404" /db_xref="GeneID:9777903" CDS 448258..449154 /gene="RBAM_004590" /locus_tag="BAMF_0404" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919000.1" /db_xref="GI:308172295" /db_xref="GeneID:9777903" /translation="MNRLKTLFIFICILIVTTSCSLIPTGNEKEERSSNSKTALKNID NAKFIVGFSNTLDRGSEIGVYSEDGTKMDSLELKDGINFTMSSYNKNDTFFSSNRSNN HLMIDNKTGAINKINEKSLSKTTEDEGAFFINSSGGYIIHDINVGYTDKGLESELVYW KGNSRKNKKQIKLDGELGSAIVAKNKIYVISSDEESMSIISINLETNKQENKASIPNK GIYFMDEKDAFQALDENTFVLAVNDNVNEKENSKLILIDRETLKVKKEVEMEKGFHPA KLKILKDSILAVSFDGKLQVFE" gene 449211..449393 /locus_tag="BAMF_0405" /db_xref="GeneID:9779700" CDS 449211..449393 /locus_tag="BAMF_0405" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919001.1" /db_xref="GI:308172296" /db_xref="GeneID:9779700" /translation="MNDVQFNDREMYVLLKNFDIQRDNKLGDITSYDLKSGKKVKTIP LKANKEWEIARFEILK" gene 449421..449672 /gene="RBAM_024150v1" /locus_tag="BAMF_0406" /db_xref="GeneID:9777904" CDS 449421..449672 /gene="RBAM_024150v1" /locus_tag="BAMF_0406" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919002.1" /db_xref="GI:308172297" /db_xref="GeneID:9777904" /translation="MSPAYIILIILPAASFLLGIIGYFIFQKVWTMVVVVLILSLIFM FVVIGAEPTFLVWVFIMTGACLISGSITKTIMNFTKRKY" gene 449868..450941 /gene="rapH1" /locus_tag="BAMF_0407" /db_xref="GeneID:9779796" CDS 449868..450941 /gene="rapH1" /locus_tag="BAMF_0407" /EC_number="3.1.-.-" /function="FOG: TPR repeat" /note="Response regulator aspartate phosphatase F;, Tetratricopeptide-like helical" /codon_start=1 /transl_table=11 /product="response regulator aspartate phosphatase" /protein_id="YP_003919003.1" /db_xref="GI:308172298" /db_xref="GeneID:9779796" /translation="MIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLM LDSLEPEDRYRDRPTVDELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGY YRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLNHLKKAKQLFEKSQLYKVKV IGCNMMVGANMYDMYRLTEAESYYREALSIVRGLEEEKVKRIIGVIFHNLGLVYLRGK NLIAAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCGKVKEARFFYETALNRARTS NEEEYLAKLKIINSLYEEYNETAVKQSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYV EGRNFLKKTIHAQTQILKVTEAI" gene complement(451576..451788) /gene="ypzD1" /locus_tag="BAMF_0408" /db_xref="GeneID:9779633" CDS complement(451576..451788) /gene="ypzD1" /locus_tag="BAMF_0408" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919004.1" /db_xref="GI:308172299" /db_xref="GeneID:9779633" /translation="MYGSPIKINNLSGNGVVNVGGALTITPITASKTAFGSGGLNTGI VIQNNSVSQAEMIGQQFSDQNVVKSF" misc_feature complement(451579..451779) /gene="ypzD1" /locus_tag="BAMF_0408" /note="Spore germination protein gerPA/gerPF; Region: gerPA; pfam10676" /db_xref="CDD:151177" gene complement(452073..452339) /gene="RBAM_004650" /locus_tag="BAMF_0409" /db_xref="GeneID:9781304" CDS complement(452073..452339) /gene="RBAM_004650" /locus_tag="BAMF_0409" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919005.1" /db_xref="GI:308172300" /db_xref="GeneID:9781304" /translation="MSVFILFYLWIVPIVIGIFCSLIAYRTTGKKRLIPGFVMIALSI VSLITGLWIGGVNYHVFIGGMFLFGTLLAGSAFPFFFALSRKQK" gene complement(452446..453720) /gene="mntH" /locus_tag="BAMF_0410" /db_xref="GeneID:9779701" CDS complement(452446..453720) /gene="mntH" /locus_tag="BAMF_0410" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="manganese transporter" /protein_id="YP_003919006.1" /db_xref="GI:308172301" /db_xref="GeneID:9779701" /translation="MSKDISAQSLQSKAVQDALDGKSKGFKRLLPFLGPAFIAAIAYI DPGNFATNISAGSKYGYMLLWVILFSNLMAFLIQVLSAKLGIATGKNLPEIARDRYPK WVSAGLWIQGELVIMATDLAEFIGAALGLNLLFGIPMIEAAIIAAIGSFAILELQRRG YRALEAGIAGLLFVVVIAFALQTFFAKPDAASVLEGLFIPKIDGMDSVLLATGILGAT VMPHAIYLHSALTQRRVVGKTDNERKKIFKFETIDILIAMVIAGAINASMLIVAAALF FKNGLYVEDLDVAYQQFGHFIGPASAILFGIGLLAAGLSSSSVGTLSGDIIMQGFIRY RIPLYLRRFITIIPPMIIIISGINATEALVWSQVVLSFGIAFALVPLIMFTSNKRLMG VLTNRKWVTALAWLIAVLVIALNLFVIYDSFR" misc_feature complement(452524..453720) /gene="mntH" /locus_tag="BAMF_0410" /note="Natural resistance-associated macrophage protein; Region: Nramp; cl00836" /db_xref="CDD:193950" gene 454401..454721 /gene="RBAM_004680" /locus_tag="BAMF_0411" /db_xref="GeneID:9779251" CDS 454401..454721 /gene="RBAM_004680" /locus_tag="BAMF_0411" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919007.1" /db_xref="GI:308172302" /db_xref="GeneID:9779251" /translation="MIFAVSLFAFGGSASAATFTPKAEPDVSILASGGTVGIYGANMR SCSKVSCSTITTFSSGKTITGTWVTGEYVQGHYTNSDKWLKVTYAGATGFVSVTTLSY YYGL" gene complement(454771..454995) /gene="ydaT" /locus_tag="BAMF_0412" /db_xref="GeneID:9779702" CDS complement(454771..454995) /gene="ydaT" /locus_tag="BAMF_0412" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919008.1" /db_xref="GI:308172303" /db_xref="GeneID:9779702" /translation="MPWSMKDYPQSLKNLEKPVRKKAIEIANAMLDEGYEEGRAIPIA TSQAKEWKKNASKEEIDQLMKHDDETKRGN" misc_feature complement(<454780..454995) /gene="ydaT" /locus_tag="BAMF_0412" /note="Uncharacterized protein conserved in bacteria (DUF2188); Region: DUF2188; cl11557" /db_xref="CDD:159541" gene complement(455053..455460) /gene="yvaD" /locus_tag="BAMF_0413" /db_xref="GeneID:9780591" CDS complement(455053..455460) /gene="yvaD" /locus_tag="BAMF_0413" /codon_start=1 /transl_table=11 /product="integral inner membrane protein" /protein_id="YP_003919009.1" /db_xref="GI:308172304" /db_xref="GeneID:9780591" /translation="MMKGLKVLFLITDIGFIVYWIVTFFEWIPKNMVFKDYDNAMIMA WNWSFFPLDIFISITGLYSLFLYKRKHALWRPFALISLVLTFCSGLQAIAFWVFIGDF DLMWWAFNLYLLLYPLYFIRKLLVSRKNSCHSF" gene complement(455457..455807) /gene="yvaE" /locus_tag="BAMF_0414" /db_xref="GeneID:9781679" CDS complement(455457..455807) /gene="yvaE" /locus_tag="BAMF_0414" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="metabolite-efflux transporter" /protein_id="YP_003919010.1" /db_xref="GI:308172305" /db_xref="GeneID:9781679" /translation="MSLAIIFEVMGTVSMKLSNGFTKLVPSILLLLFYIGSLCFLTLT LKYISVWIAYAVWSGMGIVLISLIGIFFFHEQFSVIKAVAVLLIIIGVVSLNFISESE TSSNRISVHTDRNR" misc_feature complement(455574..455801) /gene="yvaE" /locus_tag="BAMF_0414" /note="Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910" /db_xref="CDD:186252" gene 455939..456745 /gene="ydbA" /locus_tag="BAMF_0415" /db_xref="GeneID:9781680" CDS 455939..456745 /gene="ydbA" /locus_tag="BAMF_0415" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919011.1" /db_xref="GI:308172306" /db_xref="GeneID:9781680" /translation="MTEERADLERQLKDIQKWEKAQQRVMFWKTLTRLPFQLLDKLTP QFIQRKIGRILDETGTFIQSGGQYLTSEKRIIKKFQKRLPHGTCQTLHDIRNAPLAVM DEIAEAIARTSVKTATVQGAATGVGGVFTLAADIPAMLGLSLKTLQDIAIAYGFDPKD KKERVFIIKLLQLASSDVIGKKAILRDLQQYDQNDQTYQRIASQIQGWREVVYSYRDT FAAKKLLQMVPAAGIVFGASANRSALESIAETGIMLYKKRRILKRLKDIE" misc_feature 455957..456697 /gene="ydbA" /locus_tag="BAMF_0415" /note="EcsC protein family; Region: EcsC; pfam12787" /db_xref="CDD:193263" gene 456846..457154 /gene="gsiB" /locus_tag="BAMF_0416" /db_xref="GeneID:9780592" CDS 456846..457154 /gene="gsiB" /locus_tag="BAMF_0416" /function="16.8: Protect" /codon_start=1 /transl_table=11 /product="general stress protein" /protein_id="YP_003919012.1" /db_xref="GI:308172307" /db_xref="GeneID:9780592" /translation="MAQENKMSREEAGKKGGQATSNNHDKEFYQEIGQKGGEATSKNH DKEFYQEIGEKGGEATSKNHDKEFYQEIGEKGGEATSKNHDKEFYKEIGQKGGNRRSS " gene 457288..457629 /gene="ydbB" /locus_tag="BAMF_0417" /db_xref="GeneID:9778971" CDS 457288..457629 /gene="ydbB" /locus_tag="BAMF_0417" /function="Mannose-6-phosphate isomerase" /note="Polyketide synthase curC;, Cupin 2, conserved barrel" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919013.1" /db_xref="GI:308172308" /db_xref="GeneID:9778971" /translation="MSEMQNLLAIANKVKEKHDNFSIAEINDHCVRLAVFTGEYDWHH HPDSDEWFIVLEGELLIDFKDKETAVLKANDSLLIPKGTIHRTRSYVRTVNLCVEHTH AKTVITEGLPC" misc_feature 457288..>457557 /gene="ydbB" /locus_tag="BAMF_0417" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 457623..457982 /gene="ydbC" /locus_tag="BAMF_0418" /db_xref="GeneID:9780593" CDS 457623..457982 /gene="ydbC" /locus_tag="BAMF_0418" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919014.1" /db_xref="GI:308172309" /db_xref="GeneID:9780593" /translation="MLIKKIVCETDVANAEVFAQAQSRWGALSRVNGFVKQAGGWRKN ADGLFIAEIISVWENRQAYDHFMENEHDRIYEENEQKAAILSIEVMLYEEDEPFIHGL LHHPDIRYEPDWTVVRT" gene complement(458007..458828) /gene="ydbD" /locus_tag="BAMF_0419" /db_xref="GeneID:9780594" CDS complement(458007..458828) /gene="ydbD" /locus_tag="BAMF_0419" /EC_number="1.11.1.6" /function="16.8: Protect" /codon_start=1 /transl_table=11 /product="manganese-containing catalase" /protein_id="YP_003919015.1" /db_xref="GI:308172310" /db_xref="GeneID:9780594" /translation="MFTHTKKLQHPAKPDRPDPLFAKKMQEILGGQYGEISVAMQYLF QGWNTRGNEKYKDLLMDTATEEIGHVEMIATMIARLLEDAPLAEQEKAADDPVIGSIL GGMNPHHAIVSGLGAMPESSTGVPWSAGYIVASGNLLADFRANLNAESQGRLQVARLY EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPIVPSTFPKALEKQSFSHKL IHFSDGGESAEQNWLQEKAPDGEPFEYEKEPKAHGEIAKLDPVPPYVHNTLPGRK" misc_feature complement(458247..458828) /gene="ydbD" /locus_tag="BAMF_0419" /note="Manganese catalase, ferritin-like diiron-binding domain; Region: Mn_catalase; cd01051" /db_xref="CDD:153110" misc_feature complement(order(458283..458285,458382..458384, 458622..458624,458631..458633,458724..458726)) /gene="ydbD" /locus_tag="BAMF_0419" /note="dimanganese center [ion binding]; other site" /db_xref="CDD:153110" gene complement(459159..459965) /gene="dctB" /locus_tag="BAMF_0420" /db_xref="GeneID:9780595" CDS complement(459159..459965) /gene="dctB" /locus_tag="BAMF_0420" /function="TRAP-type C4-dicarboxylate transport system, periplasmic component" /note="C4-dicarboxylate-binding protein dctB; Flags: Precursor;, Extracellular solute-binding protein, family 7, bacteria, Bacterial extracellular solute-binding protein, family 7, dctP: TRAP transporter solute receptor, DctP family" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate-binding protein dctB" /protein_id="YP_003919016.1" /db_xref="GI:308172311" /db_xref="GeneID:9780595" /translation="MKSLLTCLSLMVLGIGTALFIGFHDRFSTEDPYYDDEQEGLKDQ IVFKFSHVVAENTPKGRAANKFADLVYQKSGGTIKVEVFPNGSLYSDNEEINALQNGD VQFIAPSTSKLGSLSPEWGVLDLPYAFTSYKAVQEGLNGKIGTRLFASLEKHHLKGLA YWTNGFKQLTSNKGPIFTPDDLKGQALRIMPSSVIEDQYRLLGAQPRQDSFNSTFQLL ESNLVDGEENTISNIYSKKFYNVQDLFDNQQSRIPRLCRNDRRAFLEFTD" misc_feature complement(<459237..459821) /gene="dctB" /locus_tag="BAMF_0420" /note="Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl00710" /db_xref="CDD:153950" gene 460046..461668 /gene="dctS" /locus_tag="BAMF_0421" /db_xref="GeneID:9778647" CDS 460046..461668 /gene="dctS" /locus_tag="BAMF_0421" /EC_number="2.7.3.-" /function="Signal transduction histidine kinase regulating citrate/malate metabolism" /note="C4-dicarboxylate sensor kinase;, Signal transduction histidine kinase, core, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /codon_start=1 /transl_table=11 /product="sensor histidine kinase" /protein_id="YP_003919017.1" /db_xref="GI:308172312" /db_xref="GeneID:9778647" /translation="MTKKKLTIRWKITILSYIVVLFTFLIVGIVLIGNIQHTEERELK KRLMNTARTVSEMTDVKRALEQKKQREDVRHAVEEIRIINEADYIVVMDMDHIRYSHP VSTMIGKRSRGEDEAAAFAEHIYFSEAKGEIGTAVRAFYPVKDRDLNQIGVVLAGKTL PGFGEILLQLKHEILFIVLLALGFGLAGSFLLARHIKKQMFWLEPHEIVRMYEERTAT FHSMNEGVIAIDNQHHITIFNEKAKQIFNVSQDTDGRLIWDVLKDSRLPEIVERNQAV YNEEIQVSGKVIMSSRIPIVMKKKVIGAVAIFQDRTEAAKMAEELTCVKNFVDALRVQ NHEHMNKLHTIAGLIQLGKSEKALQLAFKASSEQESVTEFLHQAIQNDAAAGLLLSKI KRGKELGISVKIDENSSFSEFPEHVDQHDIVVLLGNLIENAFGAFETADTEDKHIDIS IEQNDEVLAILIEDNGSGISDQHIPRLYEKGFTVNKTGGTGYGLYLVKQIVDKGMGVI EVDSQQGQGTAFSILFPMKGEESLNGHQGAAY" misc_feature 460046..461638 /gene="dctS" /locus_tag="BAMF_0421" /note="Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]; Region: CitA; COG3290" /db_xref="CDD:33099" misc_feature 460682..460867 /gene="dctS" /locus_tag="BAMF_0421" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 461318..461617 /gene="dctS" /locus_tag="BAMF_0421" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(461327..461329,461339..461341,461348..461350, 461429..461431,461435..461437,461441..461443, 461447..461452,461516..461527,461573..461575, 461579..461581,461594..461599,461603..461605) /gene="dctS" /locus_tag="BAMF_0421" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 461339..461341 /gene="dctS" /locus_tag="BAMF_0421" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(461441..461443,461447..461449,461516..461518, 461522..461524) /gene="dctS" /locus_tag="BAMF_0421" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 461643..462314 /gene="dctR" /locus_tag="BAMF_0422" /db_xref="GeneID:9778650" CDS 461643..462314 /gene="dctR" /locus_tag="BAMF_0422" /function="Response regulator of citrate/malate metabolism" /note="C4-dicarboxylate response regulator dctR;, Signal transduction response regulator, receiver region, Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate response regulator dctR" /protein_id="YP_003919018.1" /db_xref="GI:308172313" /db_xref="GeneID:9778650" /translation="MDIKVLLIEDDPMVQEVNKEFITGVSGFSVIATAANGDEGIRLI KELRPDLVILDVYMPKKDGIKTLQEIRKQKLEVDVIIVSAAKDKETIQLMLQNGAADY ILKPFKLERMRQALENFKQYKRKIEEHDTMSQDQLDALLKIPQNQSRNLPKGLNHFTM NEILTYMKQQTEPLSAEEAAKALGIARVTARRYLDFLEKDGQIKLDIQYGGVGRPVNR YKFVH" misc_feature 461649..462302 /gene="dctR" /locus_tag="BAMF_0422" /note="Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]; Region: CitB; COG4565" /db_xref="CDD:34203" misc_feature 461658..461999 /gene="dctR" /locus_tag="BAMF_0422" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(461667..461672,461805..461807,461829..461831, 461889..461891,461946..461948,461955..461960) /gene="dctR" /locus_tag="BAMF_0422" /note="active site" /db_xref="CDD:29071" misc_feature 461805..461807 /gene="dctR" /locus_tag="BAMF_0422" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(461814..461819,461823..461831) /gene="dctR" /locus_tag="BAMF_0422" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 461955..461963 /gene="dctR" /locus_tag="BAMF_0422" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 462123..>462245 /gene="dctR" /locus_tag="BAMF_0422" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 462369..463679 /gene="dctP" /locus_tag="BAMF_0423" /db_xref="GeneID:9778649" CDS 462369..463679 /gene="dctP" /locus_tag="BAMF_0423" /function="Na+/H+-dicarboxylate symporters" /note="C4-dicarboxylate transport protein; C4-dicarboxylate permease;, Sodium:dicarboxylate symporter, Sodium:dicarboxylate symporter family" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate transport protein" /protein_id="YP_003919019.1" /db_xref="GI:308172314" /db_xref="GeneID:9778649" /translation="MKTLSFVHRRSERQGGVGMKIFKNLTVQVITAVIIGVIVGLVWP EAGKQMKPLGDTFINAVKMIIAPIIFLTIVLGIAKMGDMKKVGKVGGKAFIYFEVVTT IALIIGLLVVNIMKPGEGLDYSKLEKGDVSQYTQNGGQGIDWIEFITHIVPSNMVDAF AKGDILQVLFFSVLFGVGLAALGERGKSIIDFFDKLSHVFFKIIGYIMRAAPIGAFGA MAYTIGHFGLDSIKPLASLMLSVYITMFLFVFVALNIICRIFGFSLWNYLRFIKDELL IVLGTSSSESVLPRMMDKMERYGCSKSVVGLVIPTGYSFNLDGTSIYLSMATVFLAQV FGVDLTIGQQITIILVLMLTSKGAAGVTGSGFIVLASTLSALQVIPLEGLALLLGVDR FMSEGRAIVNLIGNGIATIIVAKSENEFDEVKSTQAVKEMKTAV" misc_feature 462423..463655 /gene="dctP" /locus_tag="BAMF_0423" /note="Sodium:dicarboxylate symporter family; Region: SDF; cl00573" /db_xref="CDD:193876" gene 463865..464914 /gene="ydbI" /locus_tag="BAMF_0424" /db_xref="GeneID:9778648" CDS 463865..464914 /gene="ydbI" /locus_tag="BAMF_0424" /codon_start=1 /transl_table=11 /product="integral inner membrane protein" /protein_id="YP_003919020.1" /db_xref="GI:308172315" /db_xref="GeneID:9778648" /translation="MAAIFKFFQHPGVRRFSVFLVLTGVLVVFRSMINLILLTFIFTF LMDRLETVIRHVLNHFFRISQRVVITVLYIALAVGATVGGFVFYPIVAKQIEQLIKQI KHIAYHPDVIPFYEEISSVFGDINIGSYVKEGFNVLYTYLADISTFGLQVVMSLILSM FFLFEKKRLTEFMKKFQHSKLSVFYYELAYFGSKFARTFGKVLEAQFIIALVNCILTL IALAILHFPQLFGLSIMVFFLGLIPVAGVVISLIPLSIIAYTTGGAAYVIYIVLVIFV IHAIETYFLNPKLMSAKTELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVV NNEEMEKSEPEPDKT" misc_feature 464039..464863 /gene="ydbI" /locus_tag="BAMF_0424" /note="Domain of unknown function DUF20; Region: UPF0118; cl00465" /db_xref="CDD:186015" gene 465016..465942 /gene="ydbJ" /locus_tag="BAMF_0425" /db_xref="GeneID:9780596" CDS 465016..465942 /gene="ydbJ" /locus_tag="BAMF_0425" /EC_number="3.6.3.31" /function="ABC-type multidrug transport system, ATPase component" /note="Spermidine/putrescine import ATP-binding protein potA;, ABC transporter-like, ABC transporter, drrA: daunorubicin resistance ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein YdbJ" /protein_id="YP_003919021.1" /db_xref="GI:308172316" /db_xref="GeneID:9780596" /translation="MTEPILHIEGLDKTIGKKHILKNISLDVRQGEIIGLLGPNGSGK TTLIRIIVGLLKKNSGTITINGFQHDADFEKALESVGAIVENPEFYPYLTGWENLKHF ANMHKNIKEDRLQEVIERVGLANAVHDKVKTYSLGMRQRLGIAQAILHRPKLLILDEP TNGLDPGGMKDFRNHLKELAELEGTSILFATHLLREVEDLCDRVIIIQKGEIKTEVVL RGAAEKEEKAVIDIQPADKAFEWLSEQQFAPEKNGGGITVTVSKKDIPALNRALVGQD FLVYSIMPYAESLEDEFMKVTTALQEEGETNV" misc_feature 465025..465906 /gene="ydbJ" /locus_tag="BAMF_0425" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:31326" misc_feature 465031..465660 /gene="ydbJ" /locus_tag="BAMF_0425" /note="The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme...; Region: ABC_BcrA_bacitracin_resist; cd03268" /db_xref="CDD:73027" misc_feature 465127..465150 /gene="ydbJ" /locus_tag="BAMF_0425" /note="Walker A/P-loop; other site" /db_xref="CDD:73027" misc_feature order(465136..465141,465145..465153,465268..465270, 465487..465492,465589..465591) /gene="ydbJ" /locus_tag="BAMF_0425" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73027" misc_feature 465259..465270 /gene="ydbJ" /locus_tag="BAMF_0425" /note="Q-loop/lid; other site" /db_xref="CDD:73027" misc_feature 465415..465444 /gene="ydbJ" /locus_tag="BAMF_0425" /note="ABC transporter signature motif; other site" /db_xref="CDD:73027" misc_feature 465475..465492 /gene="ydbJ" /locus_tag="BAMF_0425" /note="Walker B; other site" /db_xref="CDD:73027" misc_feature 465499..465510 /gene="ydbJ" /locus_tag="BAMF_0425" /note="D-loop; other site" /db_xref="CDD:73027" misc_feature 465577..465597 /gene="ydbJ" /locus_tag="BAMF_0425" /note="H-loop/switch region; other site" /db_xref="CDD:73027" gene 465935..466702 /gene="ydbK" /locus_tag="BAMF_0426" /db_xref="GeneID:9780597" CDS 465935..466702 /gene="ydbK" /locus_tag="BAMF_0426" /function="16.1: Circulate16.8: Protect" /codon_start=1 /transl_table=11 /product="efflux ABC-transporter permease" /protein_id="YP_003919022.1" /db_xref="GI:308172317" /db_xref="GeneID:9780597" /translation="MFKLTANEHMKLFNRKVSLVALILMAVLQFIMALVIKRLVISSG TDENFIGYMAYAPGLNILLEALTIVIAATIISAEFDKKTIKFLLIRPVKRERIFISKL ITVFLVSLYLYAVYYILSLLFGIAFFGMSVTSESGTLLVNTLKVIGTNWVEAFAMACF GLLCSSLFRNSATAVILSFIVLYGAKSLVTIMSLFQNKWGSFLLFANTDLTQYMSGAK PLFAGMTPLFSVGIIIIHIVFFLAVAWWSFCKRDVRV" misc_feature 465953..466693 /gene="ydbK" /locus_tag="BAMF_0426" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" misc_feature 465956..466660 /gene="ydbK" /locus_tag="BAMF_0426" /note="ABC-2 family transporter protein; Region: ABC2_membrane_4; pfam12730" /db_xref="CDD:193206" gene 466797..467132 /gene="ydbL" /locus_tag="BAMF_0427" /db_xref="GeneID:9780598" CDS 466797..467132 /gene="ydbL" /locus_tag="BAMF_0427" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919023.1" /db_xref="GI:308172318" /db_xref="GeneID:9780598" /translation="MRNFITALPIVLLLGFSFVSFMFQFEHLVYFRLALGLFSTVGLF LLYKMKTGFRYFIIYLYASWIVLAAVTAFEEPIFSSFFFGGLVMTMGYLTYMLIYLGL KQDRGPEAV" gene 467247..468392 /gene="ydbM" /locus_tag="BAMF_0428" /db_xref="GeneID:9780599" CDS 467247..468392 /gene="ydbM" /locus_tag="BAMF_0428" /EC_number="1.3.99.-" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase" /protein_id="YP_003919024.1" /db_xref="GI:308172319" /db_xref="GeneID:9780599" /translation="MSLWIQNERQREWMEKIGLLADEFQKTAALDDEEGRFPAEKIQR LRDAGYTALTVPEAFGGAGISVYDMVLFQERLARGDAAVALGIGWHLSVMGELGEENS WNEDVFSFIAEEVKKGAVLNWAATEKQTGSPTRGGRPGTSAVKKDGQWVLNGRKTFTT LSLTLDYMLVTAWIEEKQTTGVFLIHKDQAGVSVEETWDMIAMKATGSHDLLLDHVMV SDERLVELFSGPRGAKVNGWLLHIPAAYLGIAQAARDYAVRFASEYSPNSLNGPIKDV PAVQQRVGEMELELLKARQFLFTAAQMYDDPKRRPFIKSELGAAKHIVTNAALSIVDK AMRITGAKSLERNNPLQRYYRDARAGLHNPPMDDAVIGKLAAEAFEQ" misc_feature 467277..468350 /gene="ydbM" /locus_tag="BAMF_0428" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 467304..468338 /gene="ydbM" /locus_tag="BAMF_0428" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(467520..467522,467613..467615,467619..467621, 467718..467720,467724..467726) /gene="ydbM" /locus_tag="BAMF_0428" /note="active site" /db_xref="CDD:173838" gene complement(468418..468564) /gene="fbpB3" /locus_tag="BAMF_0429" /db_xref="GeneID:9780600" CDS complement(468418..468564) /gene="fbpB3" /locus_tag="BAMF_0429" /codon_start=1 /transl_table=11 /product="Fur-regulated RNA chaperone" /protein_id="YP_003919025.1" /db_xref="GI:308172320" /db_xref="GeneID:9780600" /translation="MPKRKIKTYEQLIKENKAAIMNNQKLMNVIYDRIDRKHQKRLQH NSHT" gene complement(468546..468731) /locus_tag="BAMF_0430" /db_xref="GeneID:9778777" CDS complement(468546..468731) /locus_tag="BAMF_0430" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919026.1" /db_xref="GI:308172321" /db_xref="GeneID:9778777" /translation="MRSSPQLRSSVEGRKKHLIHLLINNGIYKKSERHLYELSLGELE SEYQICKEGADSCRNVK" gene 468946..469839 /gene="ydbO" /locus_tag="BAMF_0431" /db_xref="GeneID:9777905" CDS 468946..469839 /gene="ydbO" /locus_tag="BAMF_0431" /function="Predicted Co/Zn/Cd cation transporters" /note="Uncharacterized transporter yeaB;, Cation efflux protein, Cation efflux family, CDF: cation diffusion facilitator family transporter" /codon_start=1 /transl_table=11 /product="cation efflux system" /protein_id="YP_003919027.1" /db_xref="GI:308172322" /db_xref="GeneID:9777905" /translation="MNDQTANLKRGEKGALLNIAAYLILAAVKLVIGLVYHSEALRAD GLNNATDIVASLAVLIGLRISQRPADSDHAYGHYRAETISSLIASFIMMAVGIEVLIG GAKAVVSGTETEPSFIAAWTALGSAIVMYGMYVYNSRLADRIKSSALHAAAKDSRSDA YVSIGAFIGVVTARFHLPWIDPVIAFLIGIIICKTAWDIFKDASHSLTDGFDLKDLEP YKHTVKEIKEVSRLKVVKARYLGSTVHVEMVITVDPGLSVKEGHEVADEVEYAIKHEH DVTHVHVHVEPEVINKDRGTN" misc_feature 469027..469764 /gene="ydbO" /locus_tag="BAMF_0431" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" gene complement(469836..470153) /gene="ydbP" /locus_tag="BAMF_0432" /db_xref="GeneID:9780601" CDS complement(469836..470153) /gene="ydbP" /locus_tag="BAMF_0432" /function="16.8: Protect" /codon_start=1 /transl_table=11 /product="thioredoxin or thiol-disulfide isomerase" /protein_id="YP_003919028.1" /db_xref="GI:308172323" /db_xref="GeneID:9780601" /translation="MKKISTTEQFNELIQSDKEIIVKFFADWCPDCTRMNMFIGDILE EYNQNDWYELNRDELPELADKYQVMGIPSLLIFKNGEKKAHLHSANAKTPEEVTEFLS QHI" misc_feature complement(469848..470132) /gene="ydbP" /locus_tag="BAMF_0432" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature complement(order(470058..470060,470067..470069)) /gene="ydbP" /locus_tag="BAMF_0432" /note="catalytic residues [active]" /db_xref="CDD:48496" gene 470307..471392 /gene="ddl" /locus_tag="BAMF_0433" /db_xref="GeneID:9780602" CDS 470307..471392 /gene="ddl" /locus_tag="BAMF_0433" /EC_number="6.3.2.4" /function="16.2: Construct biomass (Anabolism)16.13: Shape" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine ligase A" /protein_id="YP_003919029.1" /db_xref="GI:308172324" /db_xref="GeneID:9780602" /translation="MKTSLGLVYGGKSAEHNVSLQTALAVTKALNTDKFDIHPIYITE KGEWQRGPLLTEPVSNVKMLQLEQNGESFALSALNREMFPEASADEKAPIDVVFPLLH GPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKVIMKHLFAQAGLPQAKYAAFLKKD WKQTPDSCLQQVEEELGYPCFVKPANLGSSVGISKCRNREELEKAFELAFEYDRKIVV EEGIAGREIEIGVLGNDEPKCSAVGEIAPKTDFYDYKAKYEDGDTDLMIPAQVTDEQY AEISEMAIKAFKAIDGSGLVRADFFLTNDGQVLINEVNTMPGFTPFSMFPLLWKEAGV DYSDLIEQLVELAKERHAEKQLIKHTF" misc_feature 470307..471353 /gene="ddl" /locus_tag="BAMF_0433" /note="D-alanyl-alanine synthetase A; Reviewed; Region: ddl; PRK01966" /db_xref="CDD:179356" misc_feature 470319..470681 /gene="ddl" /locus_tag="BAMF_0433" /note="D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820" /db_xref="CDD:190121" misc_feature 470730..471341 /gene="ddl" /locus_tag="BAMF_0433" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene 471469..472839 /gene="murF" /locus_tag="BAMF_0434" /db_xref="GeneID:9778652" CDS 471469..472839 /gene="murF" /locus_tag="BAMF_0434" /EC_number="6.3.2.10" /function="16.2: Construct biomass (Anabolism)16.13: Shape" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase" /protein_id="YP_003919030.1" /db_xref="GI:308172325" /db_xref="GeneID:9778652" /translation="MIKRTVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFI PLKGEHFNGHTFVPQAFEKGVSAVLWDRSEPNPPKERAVILVDDTLEALQKLAKAYLE ELGTRVIGVTGSNGKTTTKDMLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEI AVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKLEIINGLRED GVLFYFGDEPLLREKAYTCRTTTYGEGADNDLRLKEIKQGEEGTYFTIDSIDRSFFIP VLGRHNVMNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYN ASPTSMKAAIELIETMKGYRKKMLVLGDMLELGDEEKVFHEECGAAINPAEIDHVFTY GTLGAFIADGARKHFEEGRVSHYLDKKELLEAIRENAASGDLLLFKASRGMKLEETVK DLLEKN" misc_feature 471547..471768 /gene="murF" /locus_tag="BAMF_0434" /note="Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225" /db_xref="CDD:144716" misc_feature 471562..472824 /gene="murF" /locus_tag="BAMF_0434" /note="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Region: murF; TIGR01143" /db_xref="CDD:188114" misc_feature 471799..472347 /gene="murF" /locus_tag="BAMF_0434" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" misc_feature 472405..472641 /gene="murF" /locus_tag="BAMF_0434" /note="Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875" /db_xref="CDD:190458" gene 473119..474654 /gene="cshA" /locus_tag="BAMF_0435" /db_xref="GeneID:9779310" CDS 473119..474654 /gene="cshA" /locus_tag="BAMF_0435" /function="Superfamily II DNA and RNA helicases" /note="DEAD-box ATP-dependent RNA helicase ydbR;, DEAD-like helicase, N-terminal, DEAD/DEAH box helicase" /codon_start=1 /transl_table=11 /product="DEAD-box ATP-dependent RNA helicase ydbR" /protein_id="YP_003919031.1" /db_xref="GI:308172326" /db_xref="GeneID:9779310" /translation="MVNHDITETAIRRSLNNLTITFQDFQLSSDLMKSINRMGFEEAT PIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLVEKMNPESPNIQAIVIAPTRELAI QVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRTIRL NNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEP EHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAE ALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFD VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEA LEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKMATKEPDSTPVR LTDEAPMVSKRYKNQRTSKRRDGQGGGYRGGKGKSSNRSSYDKKRSNDRRSSGDRRQK KSY" misc_feature 473140..474270 /gene="cshA" /locus_tag="BAMF_0435" /note="helicase 45; Provisional; Region: PTZ00424" /db_xref="CDD:185609" misc_feature 473182..473784 /gene="cshA" /locus_tag="BAMF_0435" /note="DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (...; Region: DEADc; cd00268" /db_xref="CDD:28928" misc_feature 473317..473331 /gene="cshA" /locus_tag="BAMF_0435" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28928" misc_feature 473623..473634 /gene="cshA" /locus_tag="BAMF_0435" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:28928" misc_feature 473716..473724 /gene="cshA" /locus_tag="BAMF_0435" /note="motif III; other site" /db_xref="CDD:28928" misc_feature 473812..474201 /gene="cshA" /locus_tag="BAMF_0435" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(473914..473925,473983..473988,474061..474069) /gene="cshA" /locus_tag="BAMF_0435" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(474085..474087,474148..474150,474160..474162, 474169..474171) /gene="cshA" /locus_tag="BAMF_0435" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene 474771..475250 /gene="ydbS" /locus_tag="BAMF_0436" /db_xref="GeneID:9778582" CDS 474771..475250 /gene="ydbS" /locus_tag="BAMF_0436" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919032.1" /db_xref="GI:308172327" /db_xref="GeneID:9778582" /translation="MRAQPKNRISPSGLKVWRLQEVILSAVCLLAVITAAVLSHFFHW PYWITGVLGIIWIIGSVISIYAIPKIRHRIWRYEVHENEIDIQSGIFIVKRVIVPMVR VQHVDTSQGPLLRKYQLASVKISTAATVHSIPALDMEEADRLRDSISRLARVTEDDV" misc_feature 474771..475247 /gene="ydbS" /locus_tag="BAMF_0436" /note="Bacterial membrane flanked domain; Region: DUF304; cl01348" /db_xref="CDD:194107" gene 475240..476706 /gene="ydbT" /locus_tag="BAMF_0437" /db_xref="GeneID:9780603" CDS 475240..476706 /gene="ydbT" /locus_tag="BAMF_0437" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919033.1" /db_xref="GI:308172328" /db_xref="GeneID:9780603" /translation="MMSEPKRLHPAAVILNLFHIIIETIKNIILPFFLVYIVNSNHFI RFYGGIALAVLLIWLITASVIEWRKFTYRIEDGEFRIEEGLFFTKKRYISIDRIQSMN TSAGVVQQLFKLVKLQIETAGDGKNAEAVLSAITVDEAERIRAAVFQQKAEQEEHRET AAEQEPVREDDVQSVYRLSLGELLMAASTSGGIGVIISAVFALISQIDEVFPMDWLYD RFSFLKHASISIYAVIIFVGLFIAWLLSIAGMMIKHANFKIEKKEHELVITRGIIEKH QVTMPLRKIQAIKIKENVIRQLFGYATVAIVSAGSAGNEKEGAQTILFPIIRKSRLGV MLKDFTPDYVLDENRHHLPKRSLRRYLFRSVIFSVFVIIPLCILFKPWGYASLLVLPA ELVLGYASFRSASWCLNGGRLQITTRLIGKTTTIMLRRRMQMFEVSRSFLQKRRRLAS VATAVKSAHHMEHVMLRDVSEEDAERIGRWYSYEKADG" misc_feature 475243..476703 /gene="ydbT" /locus_tag="BAMF_0437" /note="Predicted membrane protein [Function unknown]; Region: COG3428" /db_xref="CDD:33234" misc_feature 475438..475680 /gene="ydbT" /locus_tag="BAMF_0437" /note="Bacterial membrane flanked domain; Region: DUF304; cl01348" /db_xref="CDD:194107" misc_feature 476005..476232 /gene="ydbT" /locus_tag="BAMF_0437" /note="Bacterial membrane flanked domain; Region: DUF304; cl01348" /db_xref="CDD:194107" misc_feature 476440..476682 /gene="ydbT" /locus_tag="BAMF_0437" /note="Bacterial membrane flanked domain; Region: DUF304; cl01348" /db_xref="CDD:194107" gene complement(476703..477302) /gene="ydcA" /locus_tag="BAMF_0438" /db_xref="GeneID:9780604" CDS complement(476703..477302) /gene="ydcA" /locus_tag="BAMF_0438" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919034.1" /db_xref="GI:308172329" /db_xref="GeneID:9780604" /translation="MFIRTENFQTFIRRYPAVSCILALQAFLWLFFSLPLHSVMMWSD AVTGYNYGVAEGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYI ASGIIGNIGTYLVEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLV IAVLSTFINSNINIMAHLFGLAGGFLLSFLCVQQKKRRY" misc_feature complement(476772..477146) /gene="ydcA" /locus_tag="BAMF_0438" /note="Rhomboid family; Region: Rhomboid; cl11446" /db_xref="CDD:196238" gene 477395..477760 /gene="acpS" /locus_tag="BAMF_0439" /db_xref="GeneID:9780605" CDS 477395..477760 /gene="acpS" /locus_tag="BAMF_0439" /EC_number="2.7.8.7" /function="16.2: Construct biomass (Anabolism)16.13: Shape" /codon_start=1 /transl_table=11 /product="holo-acyl carrier protein synthase" /protein_id="YP_003919035.1" /db_xref="GI:308172330" /db_xref="GeneID:9780605" /translation="MIFGIGIDIVELHRIENMLSRQTRFPQRILTEAEYARFTQLSDK RKIEFLAGRFAAKEAFSKAYGTGIGKELSFQDIEIGKDPAGKPVLTCAKLDGAALHVS ITHTKEYAAAQVVIERLSR" misc_feature 477395..477751 /gene="acpS" /locus_tag="BAMF_0439" /note="4'-phosphopantetheinyl transferase superfamily; Region: ACPS; cl00500" /db_xref="CDD:193842" gene 477925..478932 /gene="ydcC" /locus_tag="BAMF_0440" /db_xref="GeneID:9778290" CDS 477925..478932 /gene="ydcC" /locus_tag="BAMF_0440" /function="16.13: Shape16.5: Explore" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_003919036.1" /db_xref="GI:308172331" /db_xref="GeneID:9778290" /translation="MRKSFVLLLTGLLAVLILSACGQKSQEDIVNGLDKKAKEYTSYK AKAKMTIQTGSDPQVYNVEIWHKKPSLYRVYLENPKKDQNQVILRNANGVFVLTPSLN KSFRFQSDWPNNSSQVYLFESLVKDVQSDKDAVYSAKDKKYTFETKTNYQHNKMLPTQ EITFNKKDMSPSLVKVMDTDRKVMVKVEFKSFEFNKPFDKDSFDEKKNMTLSQMDVAT SAKPSDSFAVKTPLQLPAGVKKLEEKDISTADGKRIVMTYGGEKSFTLIQEKAQIAKA ASAVTLNGEPVNLGFTVAALSDTSLTWTYDGVDYLLSSKDLTKDEMVAAAKSMQGQSS K" misc_feature 477979..478569 /gene="ydcC" /locus_tag="BAMF_0440" /note="Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl01065" /db_xref="CDD:194024" gene 479049..480218 /gene="alrA" /locus_tag="BAMF_0441" /db_xref="GeneID:9780606" CDS 479049..480218 /gene="alrA" /locus_tag="BAMF_0441" /EC_number="5.1.1.1" /function="16.8: Protect16.11: Scavenge (Catabolism)16.2: Construct biomass (Anabolism)16.13: Shape" /codon_start=1 /transl_table=11 /product="D-alanine racemase" /protein_id="YP_003919037.1" /db_xref="GI:308172332" /db_xref="GeneID:9780606" /translation="MNTASFYRDTWAEINLSAIKENITHMKKHIGENVHLMAVVKANA YGHGDLEVGKAALEAGASCLAVAILDEAISLRKRGITAPILVLGAVPPEYVQAAAEYD VTLTGYSVEWLQEAARHLGSETVPFHLKVDTGMNRLGVKTEEEIQSVLKILSQNPGLV CKGVFTHFATADEKNRDYFLFQFERFKKLIAPLPLKELMVHCANSAAGLRLKKGFFNA VRFGISMYGLRPSADIQNEIPFQLKPAFTLHSVLSHVKKIRKGESVSYGATYTAEKDQ WIGTVPIGYADGWLRKLSGTAVLIDGKRMNIAGRICMDQLMVELDQSYPPGTKVTLIG SQKEETITMDEIAGRLETINYEIPCTISSRVPRMFLENESIMEVRNPLLQENTSK" misc_feature 479070..480158 /gene="alrA" /locus_tag="BAMF_0441" /note="alanine racemase; Region: alr; TIGR00492" /db_xref="CDD:129583" misc_feature 479073..480149 /gene="alrA" /locus_tag="BAMF_0441" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase; Region: PLPDE_III_AR; cd00430" /db_xref="CDD:143481" misc_feature order(479163..479165,479169..479171,479181..479183, 479307..479309,479436..479438,479457..479459, 479547..479549,479658..479663,479706..479717, 479844..479846,479901..479903,479982..479987, 480111..480113) /gene="alrA" /locus_tag="BAMF_0441" /note="active site" /db_xref="CDD:143481" misc_feature order(479163..479165,479169..479171,479181..479183, 479307..479309,479457..479459,479547..479549, 479658..479663,479706..479717,480111..480113) /gene="alrA" /locus_tag="BAMF_0441" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143481" misc_feature order(479169..479174,479247..479249,479256..479261, 479370..479375,479451..479462,479547..479549, 479553..479555,479805..479816,479820..479822, 479832..479837,479841..479849,479886..479888, 479901..479903,479919..479921,479988..479993, 480099..480104,480111..480116,480138..480140) /gene="alrA" /locus_tag="BAMF_0441" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143481" misc_feature order(479169..479171,479181..479183,479457..479459, 479547..479549,479844..479846,479901..479903, 479982..479987,480111..480113) /gene="alrA" /locus_tag="BAMF_0441" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143481" misc_feature order(479169..479171,479844..479846) /gene="alrA" /locus_tag="BAMF_0441" /note="catalytic residues [active]" /db_xref="CDD:143481" gene 480337..480618 /gene="ndoAI" /locus_tag="BAMF_0442" /db_xref="GeneID:9778311" CDS 480337..480618 /gene="ndoAI" /locus_tag="BAMF_0442" /function="Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain" /note="Antitoxin EndoAI; EndoA inhibitor;, CopG-like DNA-binding" /codon_start=1 /transl_table=11 /product="Antitoxin EndoAI EndoA inhibitor" /protein_id="YP_003919038.1" /db_xref="GI:308172333" /db_xref="GeneID:9778311" /translation="MSESSARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAY VSERTTRHNRDLMRRGYMEMAKINLNISSEAHYAECEAETTVERLVSGG" misc_feature 480346..>480612 /gene="ndoAI" /locus_tag="BAMF_0442" /note="Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]; Region: NikR; COG0864" /db_xref="CDD:31204" gene 480624..480974 /gene="ndoA" /locus_tag="BAMF_0443" /db_xref="GeneID:9779343" CDS 480624..480974 /gene="ndoA" /locus_tag="BAMF_0443" /EC_number="3.1.-.-" /function="Growth inhibitor" /note="Toxin mazF;, Plasmid maintenance toxin/Cell growth inhibitor, PemK-like protein" /codon_start=1 /transl_table=11 /product="endoribonuclease EndoA" /protein_id="YP_003919039.1" /db_xref="GI:308172334" /db_xref="GeneID:9779343" /translation="MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIV AAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMDK VDEALQISLALIDF" misc_feature 480633..480956 /gene="ndoA" /locus_tag="BAMF_0443" /note="PemK-like protein; Region: PemK; cl00995" /db_xref="CDD:194001" gene 481095..481916 /gene="rsbRA" /locus_tag="BAMF_0444" /db_xref="GeneID:9779342" CDS 481095..481916 /gene="rsbRA" /locus_tag="BAMF_0444" /function="16.3: Control16.8: Protect" /codon_start=1 /transl_table=11 /product="piezosome protein" /protein_id="YP_003919040.1" /db_xref="GI:308172335" /db_xref="GeneID:9779342" /translation="MSNQKVYQFIIDQHDELLDTWTAKLKEVGNQEDYQLTYHISENI CKDYIDILLLSTKDDEAAEEQISQLALRAVQLGLSLKLLSVTLSEFWKLLYETMVDHE MADHDRAELILEIDSFFSPINTEILNQYSISWEKTVSLQKIALQELSAPLIPVFEHVT VMPLVGTIDTERAKQIMENLLNGVVKHRSQVVLIDITGVPVVDTMVAHHIIQASEAVR LVGAKCLLVGIRPEIAQTIVNLGIDLSQVITKNTLQKGIQTALEMTNRKIVSLGE" misc_feature 481119..481499 /gene="rsbRA" /locus_tag="BAMF_0444" /note="Rsbr N terminal; Region: Rsbr_N; pfam08678" /db_xref="CDD:149661" misc_feature 481539..481865 /gene="rsbRA" /locus_tag="BAMF_0444" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain of the 'stressosome' complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation; Region: STAS_RsbR_RsbS_like; cd07041" /db_xref="CDD:132912" gene 481921..482286 /gene="rsbS" /locus_tag="BAMF_0445" /db_xref="GeneID:9780025" CDS 481921..482286 /gene="rsbS" /locus_tag="BAMF_0445" /function="16.8: Protect16.3: Control" /codon_start=1 /transl_table=11 /product="antagonist of RsbT" /protein_id="YP_003919041.1" /db_xref="GI:308172336" /db_xref="GeneID:9780025" /translation="MRHPKIPILKLYNCLLVSIQWELDDQTALHFQEDLLNKIYETGA NGVVIDLTSVDMIDSFIAKVLGDVITMSKLMGAKVVLTGIQPAVAVTLIELGISLEEI ETALDLEQGLETLKRELGE" misc_feature 481936..482256 /gene="rsbS" /locus_tag="BAMF_0445" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain of the 'stressosome' complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation; Region: STAS_RsbR_RsbS_like; cd07041" /db_xref="CDD:132912" gene 482289..482690 /gene="rsbT" /locus_tag="BAMF_0446" /db_xref="GeneID:9780029" CDS 482289..482690 /gene="rsbT" /locus_tag="BAMF_0446" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="switch protein/serine-threonine kinase" /protein_id="YP_003919042.1" /db_xref="GI:308172337" /db_xref="GeneID:9780029" /translation="MNDQSCVKIMTEWDIVAARQLGRNVAKELGFGTVDQARITTAIS ELARNIYLYAGKGQVSIEQVNDRGKKGLKIIAEDKGPGIADIRKVMEDGFSTSGGLGA GLPGVKRLMDEFSLQSVAEEGTEIQAVKWLR" misc_feature 482289..482687 /gene="rsbT" /locus_tag="BAMF_0446" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene 482702..483709 /gene="rsbU" /locus_tag="BAMF_0447" /db_xref="GeneID:9780030" CDS 482702..483709 /gene="rsbU" /locus_tag="BAMF_0447" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="serine phosphatase" /protein_id="YP_003919043.1" /db_xref="GI:308172338" /db_xref="GeneID:9780030" /translation="MDFREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIEHQVPP EEIISIHRKVVKELYPDLPEDVFHSLDFLIEVMIGYGMAYQEHQSLRDIQQEIRSEIE IAANVQQTLLGTKIPEEEELDIGAISVPAKQMSGDYYHFVKDKESINIAIADVIGKGI PAALCMSMIKYAMDSLPEIGIHPSQVLKNLNRVVEQNVDSSMFITMFYANYNMKSHQF TYASAGHEPGFYYSEKEKKFNDLEAKGLVLGISQDFDYSQYEQHLDEGDMIVLFSDGV TECRTENGFLERGDIQRMLEEHMDCSAQDMVKNIYDSLLRLQDFQLHDDFTLIVLKRK V" misc_feature 482702..483703 /gene="rsbU" /locus_tag="BAMF_0447" /note="Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]; Region: RsbU; COG2208" /db_xref="CDD:32390" misc_feature 482723..482953 /gene="rsbU" /locus_tag="BAMF_0447" /note="Phosphoserine phosphatase RsbU, N-terminal domain; Region: RsbU_N; pfam08673" /db_xref="CDD:149658" misc_feature 483131..483703 /gene="rsbU" /locus_tag="BAMF_0447" /note="Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cl00120" /db_xref="CDD:193664" gene 483773..484102 /gene="rsbV" /locus_tag="BAMF_0448" /db_xref="GeneID:9780031" CDS 483773..484102 /gene="rsbV" /locus_tag="BAMF_0448" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="anti-anti-sigma factor" /protein_id="YP_003919044.1" /db_xref="GI:308172339" /db_xref="GeneID:9780031" /translation="MNLTVDMKENLSDIQFNIAGEIDVYSAPVVREKLMPLANEGKNM RICLKDVNYMDSTGLGIFVGVFKTVSKEGGSLKLENLSERLVRLFEITGLKDIIDISA KSEGGVQ" misc_feature 483818..484072 /gene="rsbV" /locus_tag="BAMF_0448" /note="Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043" /db_xref="CDD:132914" misc_feature order(483833..483835,483839..483847,483863..483865, 483929..483931,483935..483943,483947..483955, 483962..483967,484031..484033,484043..484048, 484052..484054) /gene="rsbV" /locus_tag="BAMF_0448" /note="anti sigma factor interaction site; other site" /db_xref="CDD:132914" misc_feature 483938..483940 /gene="rsbV" /locus_tag="BAMF_0448" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:132914" gene 484099..484581 /gene="rsbW" /locus_tag="BAMF_0449" /db_xref="GeneID:9780032" CDS 484099..484581 /gene="rsbW" /locus_tag="BAMF_0449" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="switch protein/serine kinase and anti-sigma factor" /protein_id="YP_003919045.1" /db_xref="GI:308172340" /db_xref="GeneID:9780032" /translation="MSTSVDYIEMKIPAEPEYVGIVRLTLSGVASRMGYTYDDIVDLK IAVSEACTNAVQHAYKDENKGEVSVRFGVFEDRLEVIVADQGDSFDFDQKQQDLGPYT PSHTVDQLSEGGLGLYLMETLMDEVKVQSNSGVTVAMTKYLNGERVDHGTTIKNYETN " misc_feature 484225..484500 /gene="rsbW" /locus_tag="BAMF_0449" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(484243..484245,484255..484257,484264..484266, 484342..484344,484348..484350,484354..484356, 484360..484365,484438..484449,484483..484485, 484489..484491) /gene="rsbW" /locus_tag="BAMF_0449" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 484255..484257 /gene="rsbW" /locus_tag="BAMF_0449" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(484354..484356,484360..484362,484438..484440, 484444..484446) /gene="rsbW" /locus_tag="BAMF_0449" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 484547..485335 /gene="sigB" /locus_tag="BAMF_0450" /db_xref="GeneID:9780033" CDS 484547..485335 /gene="sigB" /locus_tag="BAMF_0450" /function="16.3: Control16.8: Protect" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma-37 factor sigma B" /protein_id="YP_003919046.1" /db_xref="GI:308172341" /db_xref="GeneID:9780033" /translation="MAQPSKTTKLTKDEVDRLILDFQIHDNKEAQETLVEVYTNLVEM LAKKYSKGKSFHEDLRQVGMIGLLGAIKRYDPEVGKSFEAFAIPTIIGEIKRFLRDKT WSVHVPRRIKELGPRIKMAVDQLTTETQRSPKVEEIAAFLDVSEEEVLETMEMGKSYQ ALSVDHSIEADADGSTVTILDIVGSQEEGYERVNQQMMIKSVLHVLSDREKQIIDLTF VQNKSQKETGDILGISQMHVSRLQRKAVKKLREALIGDPSMELM" misc_feature 484547..485317 /gene="sigB" /locus_tag="BAMF_0450" /note="RNA polymerase sigma factor SigB; Validated; Region: PRK08583" /db_xref="CDD:181489" misc_feature 484646..484855 /gene="sigB" /locus_tag="BAMF_0450" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature 484883..485110 /gene="sigB" /locus_tag="BAMF_0450" /note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539" /db_xref="CDD:146934" misc_feature 485138..485296 /gene="sigB" /locus_tag="BAMF_0450" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature order(485165..485167,485195..485197,485213..485218, 485246..485248,485252..485257,485261..485269, 485273..485278,485282..485284) /gene="sigB" /locus_tag="BAMF_0450" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene 485335..485937 /gene="rsbX" /locus_tag="BAMF_0451" /db_xref="GeneID:9780084" CDS 485335..485937 /gene="rsbX" /locus_tag="BAMF_0451" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="serine phosphatase" /protein_id="YP_003919047.1" /db_xref="GI:308172342" /db_xref="GeneID:9780084" /translation="MIQVEENEHVQTLVYQLNKEGKSICGDSFFIKANEEELVCAVAD GLGSGSLANESSSAIKDIVKTYADEDVESIIERCNQAMRNKRGATASILKFNFTKREL TYCSIGNVRFFLHSPSGEVFHPLPISGYLSGKPQKYKTYTSSYEKGATFIIYTDGLEV PHIRTCLKQGHSIEVISKSLHPYTTSRRDDLTYILGQLLS" misc_feature 485434..485928 /gene="rsbX" /locus_tag="BAMF_0451" /note="Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cl00120" /db_xref="CDD:193664" gene 486010..488169 /gene="ydcI" /locus_tag="BAMF_0452" /db_xref="GeneID:9780034" CDS 486010..488169 /gene="ydcI" /locus_tag="BAMF_0452" /function="Transcriptional accessory protein" /note="Protein yhgF;, Tex-like protein, N-terminal, Tex-like protein N-terminal domain" /codon_start=1 /transl_table=11 /product="RNA binding protein" /protein_id="YP_003919048.1" /db_xref="GI:308172343" /db_xref="GeneID:9780034" /translation="METLALLKKQIAEETALSQKNVESVIRLLEDGNTVPFIARYRKE QTGSMDEVQIQAISERWQYIQNLTQRKEEVIRLIAEQDKLTDGLKQKIEQAAKLQEVE DLYRPFKQKRKTKATVAKSKGLEPLADYILSLPKENRLHEIADQYISEEKEVATREEA IEGAKHIIAEQISDDPHFRKWIRQETYKKGILTSTAGKSAADDEKNVYEMYYEYEEPI QKVVPHRVLAMNRGEKEGILKIAIEPPADQLKAYLEKQIIKHRETPVKETLKEAIEDG YKRLIQLAIERDIRKELSEKADAQAIHIFAENLRKLLLQPPMKGKVVLGVDPAFRTGC KLAVVDETGKVLKIDVIYPHAPVKKTAEAQKKIKQLLNRYEVEVVAIGNGTASRETEQ FIVDVLKETERDIYYVIVNEAGASVYSASEIAREEFPDFQVEERSAVSIARRLQDPLA ELVKIDPKSVGVGQYQHDVSQKHLNESLRFVVETVVNQVGVNVNTASAALLQYVAGLS KTVAGNIVKKREELGKFTNRKELKEIPRLGAKTYEQCIGFLRVPEGQEPLDRTGIHPE SYKETKALLKKLHLTADQIGSADVKEKISALPLSETAEELGIGDITLADICGQLTRPE RDPRDEVPKPLLKKDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLS NQFVKHPLDVVSVGDIVTVWVEGVDVQKGRVSLSMVK" misc_feature 486028..488166 /gene="ydcI" /locus_tag="BAMF_0452" /note="Transcriptional accessory protein [Transcription]; Region: Tex; COG2183" /db_xref="CDD:32366" misc_feature 486040..486621 /gene="ydcI" /locus_tag="BAMF_0452" /note="Tex-like protein N-terminal domain; Region: Tex_N; pfam09371" /db_xref="CDD:150144" misc_feature 486970..487266 /gene="ydcI" /locus_tag="BAMF_0452" /note="Uncharacterised protein family (UPF0081); Region: UPF0081; cl00525" /db_xref="CDD:186059" misc_feature 487954..488157 /gene="ydcI" /locus_tag="BAMF_0452" /note="S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin...; Region: S1_Tex; cd05685" /db_xref="CDD:88440" misc_feature order(487978..487980,488002..488004,488032..488034, 488038..488040) /gene="ydcI" /locus_tag="BAMF_0452" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88440" gene complement(488179..488292) /gene="RBAM_005100" /locus_tag="BAMF_0453" /db_xref="GeneID:9780607" CDS complement(488179..488292) /gene="RBAM_005100" /locus_tag="BAMF_0453" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919049.1" /db_xref="GI:308172344" /db_xref="GeneID:9780607" /translation="MPNWLMKQMQKAFLEKDNYQIKLLNQCWYFYRKKHCS" gene 488392..488841 /gene="ydcK" /locus_tag="BAMF_0454" /db_xref="GeneID:9779703" CDS 488392..488841 /gene="ydcK" /locus_tag="BAMF_0454" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919050.1" /db_xref="GI:308172345" /db_xref="GeneID:9779703" /translation="MDNEQLQKLTEDISAQDFGKPFRHRAFFNDRLKTTGGRYMLSSH NIELNRKYLLEHGQSELEGIIKHELCHYHLHLEGKGYKHRDKDFRELLQKVGAPRFCT PLQTKKTEKKTYMYRCTACGQQYIKKRAMNPERYACGKCRGKIKRIF" misc_feature 488392..488838 /gene="ydcK" /locus_tag="BAMF_0454" /note="SprT homologues; Region: SprT; cl01182" /db_xref="CDD:186376" misc_feature 488392..488835 /gene="ydcK" /locus_tag="BAMF_0454" /note="hypothetical protein; Provisional; Region: PRK04351" /db_xref="CDD:179836" gene 488977..489051 /locus_tag="BAMF__t29" /db_xref="GeneID:9780608" tRNA 488977..489051 /locus_tag="BAMF__t29" /product="tRNA-Asn" /anticodon=(pos:489009..489011,aa:Asn) /codon_recognized="AAC" /db_xref="GeneID:9780608" gene 489056..489146 /locus_tag="BAMF__t30" /db_xref="GeneID:9778202" tRNA 489056..489146 /locus_tag="BAMF__t30" /product="tRNA-Ser" /anticodon=(pos:489090..489092,aa:Ser) /codon_recognized="AGC" /db_xref="GeneID:9778202" gene 489166..489240 /locus_tag="BAMF__t31" /db_xref="GeneID:9778203" tRNA 489166..489240 /locus_tag="BAMF__t31" /product="tRNA-Glu" /anticodon=(pos:489199..489201,aa:Glu) /codon_recognized="GAA" /db_xref="GeneID:9778203" gene 489252..489326 /locus_tag="BAMF__t32" /db_xref="GeneID:9778204" tRNA 489252..489326 /locus_tag="BAMF__t32" /product="tRNA-Gln" /anticodon=(pos:489284..489286,aa:Gln) /codon_recognized="CAA" /db_xref="GeneID:9778204" gene 489360..489435 /locus_tag="BAMF__t33" /db_xref="GeneID:9778205" tRNA 489360..489435 /locus_tag="BAMF__t33" /product="tRNA-Lys" /anticodon=(pos:489393..489395,aa:Lys) /codon_recognized="AAA" /db_xref="GeneID:9778205" gene 489444..489525 /locus_tag="BAMF__t34" /db_xref="GeneID:9778206" tRNA 489444..489525 /locus_tag="BAMF__t34" /product="tRNA-Leu" /anticodon=(pos:489478..489480,aa:Leu) /codon_recognized="CUA" /db_xref="GeneID:9778206" gene 489595..489678 /locus_tag="BAMF__t35" /db_xref="GeneID:9778207" tRNA 489595..489678 /locus_tag="BAMF__t35" /product="tRNA-Leu" /anticodon=(pos:489628..489630,aa:Leu) /codon_recognized="CUC" /db_xref="GeneID:9778207" gene 490118..490555 /locus_tag="BAMF_0455" /db_xref="GeneID:9778208" CDS 490118..490555 /locus_tag="BAMF_0455" /note="Terpinolene synthase, chloroplastic; Aggteo; Flags: Precursor" /codon_start=1 /transl_table=11 /product="terpinolene synthase" /protein_id="YP_003919051.1" /db_xref="GI:308172346" /db_xref="GeneID:9778208" /translation="MLSLNRALKLRDLEIFRVLKDSNILSYVIIEDTRKPFTEEDKKL EPLCYMDEEDINAILNVFKISIVNDEKLYEADSTFIRSYFSEFVNNTNLTNVIIKEYV QEDLYDYDDEDDIIFFNRILRSIGSDYVIKEFDDINWIYLSQD" gene complement(490676..491179) /gene="ywgB" /locus_tag="BAMF_0456" /db_xref="GeneID:9777906" CDS complement(490676..491179) /gene="ywgB" /locus_tag="BAMF_0456" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_003919052.1" /db_xref="GI:308172347" /db_xref="GeneID:9777906" /translation="MQYSAGVEYALHCLVYLIDVPSKKSVGIRDLAEFQGLSESFLSK VFGKLSKAGIVNSVPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVSNGLLY RDKCNSCESSNSSCTINLVMLEAEEQMRKYLRNKTLAWLNKELDVVLPKKTRTDTREY FIKKSSD" misc_feature complement(490703..491179) /gene="ywgB" /locus_tag="BAMF_0456" /note="Predicted transcriptional regulator [Transcription]; Region: COG1959" /db_xref="CDD:32142" misc_feature complement(490931..491176) /gene="ywgB" /locus_tag="BAMF_0456" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 491378..492028 /locus_tag="BAMF_0457" /db_xref="GeneID:9781784" CDS 491378..492028 /locus_tag="BAMF_0457" /EC_number="3.1.4.14" /function="Acyl carrier protein phosphodiesterase" /note="FMN-dependent NADH-azoreductase 1; FMN-dependent NADH-azo compound oxidoreductase 1; Azo-dye reductase 1;, Flavodoxin-like fold, Flavodoxin-like fold" /codon_start=1 /transl_table=11 /product="acyl carrier protein phosphodiesterase 3" /protein_id="YP_003919053.1" /db_xref="GI:308172348" /db_xref="GeneID:9781784" /translation="MSKTLIINAHPKVDDASSYSLQVMNRFLETYKELIPKSEELEQI NLYSDEVPMIDKTVLSAWEKAGKGDELTSDEQKVTERMTEVLKQFKSAKTYVIVLPLH NFNIPSKLKDYMDNIMIARETFKYTDTGSVGLLNDGRRMLVIQASESIYTNDDWYEEV EYSNKYLKSMFNFLGIEDYQIIRVQGTALLSLEDVLQKAKKEVEEAASRLAGKRKA" misc_feature 491378..492010 /locus_tag="BAMF_0457" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 492512..492712 /gene="cspC" /locus_tag="BAMF_0458" /db_xref="GeneID:9777907" CDS 492512..492712 /gene="cspC" /locus_tag="BAMF_0458" /function="16.6: Maintain16.8: Protect" /codon_start=1 /transl_table=11 /product="cold-shock protein" /protein_id="YP_003919054.1" /db_xref="GI:308172349" /db_xref="GeneID:9777907" /translation="MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEG QKVTFDVEQGARGAQAANVQKA" misc_feature 492515..492706 /gene="cspC" /locus_tag="BAMF_0458" /note="Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein...; Region: CSP_CDS; cd04458" /db_xref="CDD:88424" misc_feature order(492533..492535,492560..492562,492590..492592, 492677..492679) /gene="cspC" /locus_tag="BAMF_0458" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:88424" misc_feature order(492551..492571,492587..492598) /gene="cspC" /locus_tag="BAMF_0458" /note="RNA-binding motif; other site" /db_xref="CDD:88424" gene complement(493243..493365) /gene="yddJ" /locus_tag="BAMF_0459" /db_xref="GeneID:9778587" CDS complement(493243..493365) /gene="yddJ" /locus_tag="BAMF_0459" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919055.1" /db_xref="GI:308172350" /db_xref="GeneID:9778587" /translation="MDYMQETDFFVAVLEGDFHLLHSKEEDGLDSLEEDADFIK" gene 493886..494566 /gene="racX" /locus_tag="BAMF_0460" /db_xref="GeneID:9780611" CDS 493886..494566 /gene="racX" /locus_tag="BAMF_0460" /EC_number="5.1.1.-" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="amino acid racemase" /protein_id="YP_003919056.1" /db_xref="GI:308172351" /db_xref="GeneID:9780611" /translation="MIGILAGMGPKSTGPFVDKVVDECQKIYGAINDIDFPHMMIYSC PTPFYVNKPLNHTDMEKAIIEGAVKLEKTGVDFIAIPCNTAHIYFNQLKKSISVPLLN MVDETIKKIPKDSKKIALLATSPTVQSGIFQEALIRENYDFLHQDSWQTCVDQIIEKI KQGQINESITLFDELHRELAEKVDTAIIACTDLNVVTDKKSSDIPFVDSSACLAQAIV NKYVSLTE" misc_feature 493886..494545 /gene="racX" /locus_tag="BAMF_0460" /note="Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518" /db_xref="CDD:193849" misc_feature 493886..494539 /gene="racX" /locus_tag="BAMF_0460" /note="aspartate racemase; Region: asp_race; TIGR00035" /db_xref="CDD:129146" gene complement(494739..495308) /gene="RBAM_005500" /locus_tag="BAMF_0461" /db_xref="GeneID:9779626" CDS complement(494739..495308) /gene="RBAM_005500" /locus_tag="BAMF_0461" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919057.1" /db_xref="GI:308172352" /db_xref="GeneID:9779626" /translation="MKKFKMFFDIEKEEQWLNEQLQKGYRCTNISGSGIYTFEKTDKT YVMRLDYQDYLSKKKFKDYKGIYEDFGWSYINSPWLSGTRYWQKEDDDQNEIFSDRQS KSNYYKRLMGYSSCFGLLCLFYSYMIYKDSGLYLAEGLWSMEGAMFWKAFLFETPFAL LRSLPALMAVIFGISYYKAYRKYSMLKEK" misc_feature complement(494943..495287) /gene="RBAM_005500" /locus_tag="BAMF_0461" /note="Protein of unknown function (DUF2812); Region: DUF2812; pfam11193" /db_xref="CDD:151635" gene complement(495295..495612) /gene="RBAM_005510" /locus_tag="BAMF_0462" /db_xref="GeneID:9779704" CDS complement(495295..495612) /gene="RBAM_005510" /locus_tag="BAMF_0462" /function="Predicted transcriptional regulators" /note="Uncharacterized 37.1 kDa protein in transposon TN4556;, Winged helix repressor DNA-binding" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919058.1" /db_xref="GI:308172353" /db_xref="GeneID:9779704" /translation="MKHKLLPLSETMHYILLALREPLHGYAAMQKIEKMSNGTVMLAA GTLYGAIENLNKHGWIESVGESGRRKVYMITAEGSDILKMEQNRLLHILSLYEGSESN EEI" misc_feature complement(495349..495570) /gene="RBAM_005510" /locus_tag="BAMF_0462" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 495918..497306 /gene="ydeF" /locus_tag="BAMF_0463" /db_xref="GeneID:9779705" CDS 495918..497306 /gene="ydeF" /locus_tag="BAMF_0463" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="PLP-dependent transcriptional regulator" /protein_id="YP_003919059.1" /db_xref="GI:308172354" /db_xref="GeneID:9779705" /translation="MPINSFENYPMSWKPTIDKTEKPIYKAIAGKLEQDILQGVLLPG TKLPPQRELADYLDLNVSTISKAFKVCELKGLLSASVGSGTFVAYDALSNAYLLEDTK PKHLIEMGATLPDQVSYEPLLLQLKSMLQEEDYEKWFGYGRTGESLWQKDAAVKLIRR GGFETSVDHILFANGGQNAIAATLASLCKPGDRIGVDHHTYPGLKTAASMLIVQIVPI KSENNEMSPSSFEYACKNENIKGIYLIPDYHNPTASFMSVENRNTIAGIAKKYNQFII EDASYHLLGKNPLPAIASFAPEQTIHIAGLSKSLAPGLRLAYVAVPSQYKEPISKALY NLNITVSPLLAELTARTIVSNQFEVLIESHREQTIRRNKIVNQYLHGYTCAGAETGIF RWLMLPGNMTGAEFENLAAQHGVQVYAAERFVVGNSCPERAVRVSVCAPKTLGELEQG LMILKRLLDEHM" misc_feature 495984..497303 /gene="ydeF" /locus_tag="BAMF_0463" /note="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:31361" misc_feature 495984..496181 /gene="ydeF" /locus_tag="BAMF_0463" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(495984..495986,495990..495992,496059..496061, 496065..496070,496092..496106,496110..496115, 496122..496124,496152..496157,496161..496172) /gene="ydeF" /locus_tag="BAMF_0463" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 496236..497285 /gene="ydeF" /locus_tag="BAMF_0463" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(496440..496448,496518..496520,496665..496667, 496758..496760,496830..496832,496836..496841, 496860..496862) /gene="ydeF" /locus_tag="BAMF_0463" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(496449..496451,496548..496550,496737..496739, 496854..496862,496947..496949,496956..496958) /gene="ydeF" /locus_tag="BAMF_0463" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 496839..496841 /gene="ydeF" /locus_tag="BAMF_0463" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 497404..498699 /gene="ydeG" /locus_tag="BAMF_0464" /db_xref="GeneID:9780614" CDS 497404..498699 /gene="ydeG" /locus_tag="BAMF_0464" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_003919060.1" /db_xref="GI:308172355" /db_xref="GeneID:9780614" /translation="MLQKDSINVSDGQSASLRQFIDSPEKQKALYKRTLAVVSLSQIF GGAGLAAGVTVGALIAQEMLGTDAFAGVPSALFTLGSAGAALFVGRLSQRYGRRTGLS AGFMIGGLGAIGVILAAMINSVFLLFASLIIYGAGTATNLQARYAGTDLANHKQRATA VSMTMVFTTFGAVAGPNLVNVMGQFALSIGVPSLAGPFILAAAAYILAGATLFIMLRP DPLVIARTIEISGQKPDDRGQVTADEHTKKKRGIIAGAAVMILTQIVMTAIMTMTPVH MRHHGHGLGAVGLVIGFHIGAMYLPSLVTGVLADKLGRTVMAVSSGMTLLLAGLVSAF APGDSMILMVIALSLLGLGWNFGLISGTALIVDSTEASARAKTQGAVDVLIALSGAAG GALSGMVVAGASYLTLSLGGGILSLLLIPVVIWSLGNKE" misc_feature 497584..498546 /gene="ydeG" /locus_tag="BAMF_0464" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(497623..497625,497632..497637,497644..497646, 497656..497661,497665..497670,497815..497820, 497827..497832,497839..497844,497848..497850, 497884..497889,497896..497901,497917..497919, 498190..498192,498199..498204,498211..498216, 498223..498225,498265..498267,498277..498279, 498289..498291,498298..498300,498307..498309, 498454..498456,498463..498468,498475..498477, 498487..498492,498499..498501,498532..498537, 498544..498546) /gene="ydeG" /locus_tag="BAMF_0464" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature complement(498891..499852) /note="potential frameshift: common BLAST hit: gi|16080506|ref|NP_391333.1| spore coat protein assembly factor CotR" gene complement(498891..499415) /gene="cotR" /locus_tag="BAMF_0465" /db_xref="GeneID:9780615" CDS complement(498891..499415) /gene="cotR" /locus_tag="BAMF_0465" /EC_number="3.1.1.-" /function="Patatin" /note="sporulation hydrolase cotR;, Patatin" /codon_start=1 /transl_table=11 /product="sporulation hydrolase cotR" /protein_id="YP_003919061.1" /db_xref="GI:308172356" /db_xref="GeneID:9780615" /translation="MSDVILRSSGAPATQRAYQNYVDGYVVATNPSTASIAFAVGKAK VPLDQIAVLSIGTGEAQTRLRRDTRGWGMVSADNIRPENLKNLPPNWGVLLDRSPNEP LLPFLQIVGGGNGYYESMVSANLLGDRFFRLDPRIPNFSKTDPSVVPAVIEIANKTNL QPVNKFIEKNWNSK" misc_feature complement(498936..>499412) /gene="cotR" /locus_tag="BAMF_0465" /note="Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396" /db_xref="CDD:196212" gene complement(499523..499852) /gene="yvdO1" /locus_tag="BAMF_0466" /db_xref="GeneID:9778565" CDS complement(499523..499852) /gene="yvdO1" /locus_tag="BAMF_0466" /EC_number="3.1.1.-" /function="Patatin" /note="sporulation hydrolase cotR;, Patatin" /codon_start=1 /transl_table=11 /product="sporulation hydrolase cotR" /protein_id="YP_003919062.1" /db_xref="GI:308172357" /db_xref="GeneID:9778565" /translation="MAKYRIMTFDGGGTLGALSLQLLNRLVKQNPTLISRTHVFSGNS IGSFTALALASGRSPQETFRYFKENILPAFSISRPGGPVFNQQLPYSGFIKAVRNFSR KIFVSKT" misc_feature complement(<499553..499846) /gene="yvdO1" /locus_tag="BAMF_0466" /note="Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396" /db_xref="CDD:196212" misc_feature complement(order(499721..499723,499808..499810, 499814..499819)) /gene="yvdO1" /locus_tag="BAMF_0466" /note="active site" /db_xref="CDD:132836" misc_feature complement(499715..499729) /gene="yvdO1" /locus_tag="BAMF_0466" /note="nucleophile elbow; other site" /db_xref="CDD:132836" gene 500031..500330 /gene="RBAM005570" /locus_tag="BAMF_0467" /db_xref="GeneID:9781704" CDS 500031..500330 /gene="RBAM005570" /locus_tag="BAMF_0467" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919063.1" /db_xref="GI:308172358" /db_xref="GeneID:9781704" /translation="MYYNQDEDQMFIPKKKPYNEACDSGHDMDQVEEALRAEAAREAE ARARAEEAIARAEEARARAAEAKAEAIRLAAKAKCKKRHKKEKEHDCKRKHKKKK" gene 500741..502087 /gene="cotQ" /locus_tag="BAMF_0468" /db_xref="GeneID:9779637" CDS 500741..502087 /gene="cotQ" /locus_tag="BAMF_0468" /EC_number="1.5.3.-" /function="FAD/FMN-containing dehydrogenases" /note="6-hydroxy-D-nicotine oxidase; 6-HDNO;, FAD-binding, type 2, FAD binding domain" /codon_start=1 /transl_table=11 /product="lipoprotein CotQ" /protein_id="YP_003919064.1" /db_xref="GI:308172359" /db_xref="GeneID:9779637" /translation="MGSAQLTGRVIFKGDPGYTQAVKNWNPYVDVYPLVFVFAQNSYD VSNAIKWARENNVPLRVRSGRHALDKNLSVVSDGIVIDVSDMNKVLLDEKNAIATVQT GIHVGPLVKGLARDGFMAPFGDSPTVGIGGITMGGGFGVLSRSIGLISDNLLALKMVD AKGRIIRANQSHNEDLLWASRGGGGGNFGYNTQYTFKVHRAPKTATVFNIVWPWEQLE TVFKAWQRWAPFADERLGCYLEIFSKVNGLCHAEGIFLGSKPELIKALRPLLNTGTPT QTVIKTLYYPDCIDFLDPDEPIPGRSDQSVKFSSAWALNLWPQEPISIMRQFLERATG TETNFFFINWGGAISRVPSSETAFFWRRPLFYTEWNASWEHKSQEASNLASVERVRQL MKPYVTGSYVNVPDQNIENFGKAYYGSNFAKLQKIKAKYDPENVFRFPQSIPPSYH" misc_feature 500741..502075 /gene="cotQ" /locus_tag="BAMF_0468" /note="FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277" /db_xref="CDD:30625" misc_feature 500837..501247 /gene="cotQ" /locus_tag="BAMF_0468" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" misc_feature 501938..502072 /gene="cotQ" /locus_tag="BAMF_0468" /note="Berberine and berberine like; Region: BBE; pfam08031" /db_xref="CDD:116641" gene complement(502212..502637) /gene="RBAM_005590" /locus_tag="BAMF_0469" /db_xref="GeneID:9778564" CDS complement(502212..502637) /gene="RBAM_005590" /locus_tag="BAMF_0469" /function="Lactoylglutathione lyase and related lyases" /note="Glyoxalase/bleomycin resistance protein/dioxygenase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919065.1" /db_xref="GI:308172360" /db_xref="GeneID:9778564" /translation="MKPRITVITLGVDHLEKALHFYRDGMGLPTEGIVGKEFEHGAVA FFDLQPGLKLAIWDRKSIAHEANVALTAPSPVECTLGHNVNSKAEVDKVMEQAKQAGA TITDPAHDTFWGGYSGHFQDPDGHLWEIVWNPHWDTLEN" misc_feature complement(502239..502619) /gene="RBAM_005590" /locus_tag="BAMF_0469" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_10; cd07251" /db_xref="CDD:176674" gene 502908..503843 /gene="czcD" /locus_tag="BAMF_0470" /db_xref="GeneID:9779706" CDS 502908..503843 /gene="czcD" /locus_tag="BAMF_0470" /function="Co/Zn/Cd efflux system component" /note="Cadmium, cobalt and zinc/H(+)-K(+) antiporter;, Cation efflux protein, Cation efflux family, CDF: cation diffusion facilitator family transporter" /codon_start=1 /transl_table=11 /product="Cadmium, cobalt and zinc/H(+)-K(+) antiporter CzcD" /protein_id="YP_003919066.1" /db_xref="GI:308172361" /db_xref="GeneID:9779706" /translation="MGHNHTDGSNKKVLLISFIMITGYMIIEAIGGFLTNSLALLSDA GHMLSDSISLMIALIAFKLAEKKASHNKTFGYKRFEILAAVINGAALILISLYIIYEA IKRFSHPPEVATTGMLIISIIGLAVNILVAWIMLNGGDTKNNLNIKGAYLHVVSDMLG SVGAILAAILIIFFGWGWADPLASVIVAVLVLRSGYNVTKDAIHVLMEGTPENIDVTD IIHTIEETEGIQNIHDLHIWSITSGLNALSCHAVVDDQLTISESERILRKIEHVLEHK GITHVTVQMETAAHNHDNTILCQAKSEQTDGHHHH" misc_feature 502914..503777 /gene="czcD" /locus_tag="BAMF_0470" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" misc_feature 502938..503765 /gene="czcD" /locus_tag="BAMF_0470" /note="Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053" /db_xref="CDD:30402" gene complement(504120..505400) /locus_tag="BAMF_0471" /db_xref="GeneID:9778632" CDS complement(504120..505400) /locus_tag="BAMF_0471" /function="Uncharacterized membrane-associated protein" /note="Uncharacterized membrane protein HI1629;, SNARE associated Golgi protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919067.1" /db_xref="GI:308172362" /db_xref="GeneID:9778632" /translation="MSHLITLFEQHSYLILFSGIILELLAIPISAEMIMSYAGYFVYQ GKMDYALALLTAFISAGTGITITYWVGRTGGYRLIERYGKYVHLGPERYNKTAAWFER SGSKLLVFAYFIPGVRHFAGYVSGSSRMSFQTFIIPAYIGAILWGSCFITLGKLLGPK WETLHQAASKYLIIFLLVLAVLLAGYLLFRFYKIQIKNFFIQWLTRLTNRFRTIRATE IFLTCLTSVLIGFVILMFGLAQDYLANDVAQFNQIAEYVVYTAFYMDWMKELFIFQQP AGIAGLIVLTLLVIWLKNQNRLLEYLLLSVSILGGAPFREFIMEAFSILRTIGFKGKF HSADFPDLNAAMMIIIYGTCIFLLVRHSNTHYVTIAAPLFGLLLLIGLAIVNIKWTSV LPSDIVGGYVYGGVWMFFNFLLFELFRLVLERIK" misc_feature complement(504939..505250) /locus_tag="BAMF_0471" /note="SNARE associated Golgi protein; Region: SNARE_assoc; cl00429" /db_xref="CDD:193815" gene 505864..506397 /gene="yrkC" /locus_tag="BAMF_0472" /db_xref="GeneID:9777908" CDS 505864..506397 /gene="yrkC" /locus_tag="BAMF_0472" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="dioxygenase" /protein_id="YP_003919068.1" /db_xref="GI:308172363" /db_xref="GeneID:9777908" /translation="MYYIPFSHQCYYCVNVPMYSDGRSVYWTVPNNYDPSYEDRNLLL KDYGPKPFVVNINKAAKQNHTFRTALWTGKHFQITLMSIGIGEDIGLEIHPHVDQFLR IEQGRGIVKMGRSKENLTFQRNVYDDFAIVVPAGTWHNVINTGNTPLKLYSIYAPPNH PFGTVHATKADAEAAEG" misc_feature 505990..506382 /gene="yrkC" /locus_tag="BAMF_0472" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 506729..507250 /gene="yyaR" /locus_tag="BAMF_0473" /db_xref="GeneID:9781441" CDS 506729..507250 /gene="yyaR" /locus_tag="BAMF_0473" /function="16.8: Protect" /codon_start=1 /transl_table=11 /product="acetyl-transferase" /protein_id="YP_003919069.1" /db_xref="GI:308172364" /db_xref="GeneID:9781441" /translation="MIIKMTQCHMKDFNKPNEPLVVFGRIIPALENNVWSYTEERFSK PYVKKYEDEDIDVSYAEEEGKAVFLYYADNNCIGRIKIRAHWNGYALIEDIAVAKDYR KNGVGTALLNRAMEWAKENDCCGLMLETQDINVSACHFYAKHGFVIGAVDTMLYSNFS TANEIAIFWYCKF" misc_feature <506852..507229 /gene="yyaR" /locus_tag="BAMF_0473" /note="Acetyltransferases [General function prediction only]; Region: RimI; COG0456" /db_xref="CDD:30804" misc_feature 506927..507115 /gene="yyaR" /locus_tag="BAMF_0473" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature order(507011..507019,507047..507052) /gene="yyaR" /locus_tag="BAMF_0473" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(507382..508272) /gene="ydeE1" /locus_tag="BAMF_0474" /db_xref="GeneID:9781914" CDS complement(507382..508272) /gene="ydeE1" /locus_tag="BAMF_0474" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="AraC/XylS family transcriptional regulator" /protein_id="YP_003919070.1" /db_xref="GI:308172365" /db_xref="GeneID:9781914" /translation="MDSIKSMNSALTYIEENLTNDIDFKEAAKLAFCSEYHFKRMFSF LTGISLSEYIRRRRLTLAAFELKDRSAKVIDIAIKYGYHSPDSFARAFQHLHGIRPSE AKHNGHSLKAYPRMTFQLSIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGVNPDIAS MWESLDEETINELKELSNTTPLGLISASTNFSEGRTEEKGELDHYIGAATTKHCPNHL SQLKVPALTWAVFEAIGSFPDALQEVWGRIYSEWFPSSNYEQVEGPEILWNEHKDITS PSFKSEIWVPISKKECYTKK" misc_feature complement(507967..508212) /gene="ydeE1" /locus_tag="BAMF_0474" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature complement(507403..507891) /gene="ydeE1" /locus_tag="BAMF_0474" /note="Bacterial transcription activator, effector binding domain; Region: AraC_E_bind; cl01368" /db_xref="CDD:194113" gene 508687..508848 /gene="RBAM_005650" /locus_tag="BAMF_0475" /db_xref="GeneID:9780612" CDS 508687..508848 /gene="RBAM_005650" /locus_tag="BAMF_0475" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919071.1" /db_xref="GI:308172366" /db_xref="GeneID:9780612" /translation="MITVFRILYGSDAKIGNILADKGSSLSFFKPNNHKKTVIGAFSL WQINVNSMT" gene 508998..510044 /gene="RBAM_005660" /locus_tag="BAMF_0476" /db_xref="GeneID:9779707" CDS 508998..510044 /gene="RBAM_005660" /locus_tag="BAMF_0476" /EC_number="2.1.1.-" /function="Predicted Fe-S-cluster redox enzyme" /note="Ribosomal RNA large subunit methyltransferase N; 23S rRNA m2A2503 methyltransferase;, Ribosomal RNA large subunit methyltransferase RlmN;, Radical SAM superfamily, TIGR00048: radical SAM enzyme, Cfr family" /codon_start=1 /transl_table=11 /product="florfenicol/chloramphenicol resistance like protein" /protein_id="YP_003919072.1" /db_xref="GI:308172367" /db_xref="GeneID:9779707" /translation="MRQKNKYIRIQEFLKQNEFPDFRMKQITNAIFHGRINHFNEITV LPKSLRKMLVKEFGESVLNIAALKEQHSEQVTKVLFEISGDEKIETVNMKYKAGWESF CISSQCGCHFGCTFCATGDIGLKHNLTSDEITDQILYFHLKGHSIDSISFMGMGEALA NRQVFDALHVLTNPELFALSPRRLSISTIGIIPGIKKMTQNYPQVNLTFSLHSPFNEQ RSKLMPINERYPLMEVMDTLDEHIRVTSRKVYIAYIMLPGVNDSIDHANEVVKLLRGR YKRGNLFHVNIIRYNPTVSSPMRFKEVNENQVVNFYKTLKSAGINVTIRSQFGIDIDA ACGQLYGNYQKNNS" misc_feature 509025..510032 /gene="RBAM_005660" /locus_tag="BAMF_0476" /note="Predicted Fe-S-cluster redox enzyme [General function prediction only]; Region: COG0820" /db_xref="CDD:31162" misc_feature 509322..509906 /gene="RBAM_005660" /locus_tag="BAMF_0476" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(509325..509327,509331..509333,509337..509339, 509343..509351,509457..509459,509463..509468, 509556..509564,509625..509627,509757..509759, 509862..509867) /gene="RBAM_005660" /locus_tag="BAMF_0476" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene 510309..510716 /gene="ydeH" /locus_tag="BAMF_0477" /db_xref="GeneID:9779708" CDS 510309..510716 /gene="ydeH" /locus_tag="BAMF_0477" /codon_start=1 /transl_table=11 /product="integral inner membrane protein" /protein_id="YP_003919073.1" /db_xref="GI:308172368" /db_xref="GeneID:9779708" /translation="MLKRFFLVFLTLMMSIFAVLAAAEESPGEHVISFDEPIILLVSL GIILCLFLPPLVMSFFGSLIVRIISGVYQCFIVLTFAGLIPIGFLIPNGYLTLLVAVA GTLVSSASVAVTLFAGRTKNTRKVRNDTETKLS" gene 510832..511794 /gene="RBAM_005730" /locus_tag="BAMF_0478" /db_xref="GeneID:9780616" CDS 510832..511794 /gene="RBAM_005730" /locus_tag="BAMF_0478" /function="Arsenite efflux pump ACR3 and related permeases" /note="Solute carrier family 10 member 6; Sodium-dependent organic anion transporter;, Bile acid:sodium symporter" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919074.1" /db_xref="GI:308172369" /db_xref="GeneID:9780616" /translation="MKITREKLENQQIWIYGVSLVIGGIAGIAGKDSGLTWGWTISPL IAVLMYAMFAQIPFLKLREAISNLKFMAALLIGNFLAVPVVVWVLTAIFPQSPPILLG VCLVLLTPCIDYVIVFTQLGKGNEKLILASTPVLFVVQMVLLPLYLWLFIGKEVVGAV HAGPFLEAFLFLIAAPLLAAVMTQLWADKKPAGEKVLEWTAWMPVPFMALVLLAVVAT QIGKVYSDFDIIVRVIPIYLLFLLIMPFVSRFIAYAFRLDTGEGRALIFSTGTRNSLA VLPLALALPDAWASLAAAVIVTQTIVELIGELVYIKAVPDWLLK" misc_feature 510883..511650 /gene="RBAM_005730" /locus_tag="BAMF_0478" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene complement(511872..512921) /gene="adhA" /locus_tag="BAMF_0479" /db_xref="GeneID:9779709" CDS complement(511872..512921) /gene="adhA" /locus_tag="BAMF_0479" /EC_number="1.1.1.-" /function="16.11: Scavenge (Catabolism)" /codon_start=1 /transl_table=11 /product="dehydrogenase" /protein_id="YP_003919075.1" /db_xref="GI:308172370" /db_xref="GeneID:9779709" /translation="MCNNHPTRVLSAPHAKAAFERTTIERRALRPHDILIDIKYSGIC HSDIHSAFDEWGGGIFPMVPGHEIAGVVEAVGEKVTKFAVGDRVGVGCFVDSCGECEY CLNGDEQYCTKGVVQTYNNLDYEGNPTYGGYSQKIVVTERFVVRIPDQLELDAASPLL CAGITTYSPLKHWNAGPGKKVAIVGMGGLGHLAVQFAHALGAEVTVLSRSMNKKDEAL EFGADHYFATGNPDTFTELAGRFDLILNTVSANLDVDAYLSLLRIDGTLVNVGAPANP DSYSVFSLITGRRSIAGSLVGGIPQTQEMLDFAAEHGIAPKIEVIPANQVDEAYERVL QSDVRYRFVIDISTL" misc_feature complement(511878..512888) /gene="adhA" /locus_tag="BAMF_0479" /note="Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064" /db_xref="CDD:31264" misc_feature complement(511887..512879) /gene="adhA" /locus_tag="BAMF_0479" /note="Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283" /db_xref="CDD:176186" misc_feature complement(order(512034..512042,512109..512114, 512172..512174,512178..512183,512238..512240, 512283..512285,512295..512300,512352..512369, 512427..512429,512439..512441,512775..512777, 512784..512792)) /gene="adhA" /locus_tag="BAMF_0479" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature complement(order(512034..512036,512439..512441, 512646..512648,512724..512726,512784..512786, 512790..512792)) /gene="adhA" /locus_tag="BAMF_0479" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature complement(order(512439..512441,512724..512726, 512790..512792)) /gene="adhA" /locus_tag="BAMF_0479" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature complement(order(512589..512591,512613..512615, 512622..512624,512631..512633)) /gene="adhA" /locus_tag="BAMF_0479" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature complement(order(512037..512060,512067..512072, 512076..512078,512103..512105,512109..512117, 512130..512132,512406..512408,512418..512420, 512592..512594)) /gene="adhA" /locus_tag="BAMF_0479" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176186" gene 513088..513492 /gene="adhR" /locus_tag="BAMF_0480" /db_xref="GeneID:9778300" CDS 513088..513492 /gene="adhR" /locus_tag="BAMF_0480" /function="Predicted transcriptional regulators" /note="HTH-type transcriptional regulator hmrR; Copper efflux regulator; Copper export regulator;, Bacterial regulatory protein, MerR" /codon_start=1 /transl_table=11 /product="transcriptional activator" /protein_id="YP_003919076.1" /db_xref="GI:308172371" /db_xref="GeneID:9778300" /translation="MKIAQAAKQVELSTATLRYYESIGLIPPVKRNGSGIRDYDENDV NWIQFIKCMRSAGLSIEALIEYTALFTEGADHTIEPRKNILINERKRLKEKQREIGET INRLNKKIEDYEDILENEAKLKGSLKAECISE" misc_feature 513088..513456 /gene="adhR" /locus_tag="BAMF_0480" /note="Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789" /db_xref="CDD:31132" misc_feature 513088..513429 /gene="adhR" /locus_tag="BAMF_0480" /note="Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB; Region: HTH_YyaN; cd01109" /db_xref="CDD:133384" misc_feature order(513091..513099,513139..513141,513190..513198) /gene="adhR" /locus_tag="BAMF_0480" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133384" misc_feature order(513232..513234,513241..513243,513253..513258, 513283..513285,513340..513342,513352..513354, 513370..513372,513382..513384,513391..513396) /gene="adhR" /locus_tag="BAMF_0480" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:133384" gene 513744..515033 /gene="RBAM_005760" /locus_tag="BAMF_0481" /db_xref="GeneID:9778302" CDS 513744..515033 /gene="RBAM_005760" /locus_tag="BAMF_0481" /function="Na+/H+ antiporter" /note="Malate-2H(+)/Na(+)-lactate antiporter;, Na+/H+ antiporter NhaC-like, Na+/H+ antiporter family" /codon_start=1 /transl_table=11 /product="Malate-2H(+)/Na(+)-lactate antiporter" /protein_id="YP_003919077.1" /db_xref="GI:308172372" /db_xref="GeneID:9778302" /translation="MNNNKNPWALLPLVLFVGLFVGSGLVTGDFYKLPILIAAIIASA FALLFNRKKSLNQKIEWFASGAGHPDIIIMVMIFILAGAFASAAEAMGAVHSTVNLAL SIIPQQFLLPGLFIISCFISISMGTSMGTIAAVAPISAGLSGELGIPGAITMAAVVGG AMFGDNLSFISDTTIASVRTQKTQMRDKFKTNFLIVLPAAIVTVIILFFIPAGHAGHA GAESYSWIKVLPYVAVLVFALIGFNVMAVIFGGLVLTGIIGLAGGSLTFASYFKAITD GIAGMSDLIILSMLIGGMVGVMKQNGGIDFLLEFITKRIRSKKGAEAGIAGLVSVTNL AAANNTISIIAAGPIAKNIADEFKIDNRKSASILDIFSCMVQGLIPYGAQLLSAGKFG NISPVSILPYSFYPVLIGICGIIAIMFGLPKFTRNTK" misc_feature <514041..514370 /gene="RBAM_005760" /locus_tag="BAMF_0481" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" misc_feature 514221..515006 /gene="RBAM_005760" /locus_tag="BAMF_0481" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(515063..516445) /gene="RBAM_005770" /locus_tag="BAMF_0482" /db_xref="GeneID:9779710" CDS complement(515063..516445) /gene="RBAM_005770" /locus_tag="BAMF_0482" /EC_number="2.6.1.-" /function="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs" /note="rhizopine catabolism regulatory protein mocR;, Aminotransferase, class I/II" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_003919078.1" /db_xref="GI:308172373" /db_xref="GeneID:9779710" /translation="MKNIIFAFRSDAPKYKQIYEQFKTLIEQGNIQTNERLPSIRELA DSLLVSRNTTLMAYDLLLAEGYIRGETRKGYFANEIEPSLFQKENDIVQAEKTESPQP VSVDFRAGAVDQKHFPLKTWRKLYNHVLTSKKSFLYGDPFGELGLREQIAAYLLESRG VKTDADSIIIGSSTQQMLIYLSRILKEDFSGIIVENPGFDGAREAFQFHGLSLETMPV YENGADFSQLHAMKEKLIYVTPSHHSPYGVSMSIQQRQTLINWVNKREGYILEDDYDS EYRYTQQPFPALASIQSDRVIYLGNFSKSFLPGIRISYMVLPQRILHRYKKRFLYFES TASSLNQLAMAELMKAGEWTRHIKRMRTVYKRKMQHLISHIKQQFGDHVTIIGEQSGL YILVRVHLNYSEETLIERAFQYGVKVYPTAIYFVSGKPEPPIIKLGFAHLDTDQIAQG IQLLKHAWLT" misc_feature complement(515069..516418) /gene="RBAM_005770" /locus_tag="BAMF_0482" /note="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:31361" misc_feature complement(516218..516409) /gene="RBAM_005770" /locus_tag="BAMF_0482" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(516221..516232,516236..516241, 516269..516271,516278..516283,516287..516301, 516323..516328,516332..516334,516401..516403, 516407..516409)) /gene="RBAM_005770" /locus_tag="BAMF_0482" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(515081..516133) /gene="RBAM_005770" /locus_tag="BAMF_0482" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(515513..515515,515534..515539, 515543..515545,515621..515623,515714..515716, 515849..515851,515921..515929)) /gene="RBAM_005770" /locus_tag="BAMF_0482" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(515417..515419,515426..515428, 515513..515521,515642..515644,515819..515821, 515918..515920)) /gene="RBAM_005770" /locus_tag="BAMF_0482" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(515534..515536) /gene="RBAM_005770" /locus_tag="BAMF_0482" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 516564..517184 /gene="RBAM_005780" /locus_tag="BAMF_0483" /db_xref="GeneID:9779711" CDS 516564..517184 /gene="RBAM_005780" /locus_tag="BAMF_0483" /function="Transcriptional regulator" /note="Protease synthase and sporulation protein PAI 2;, Negative transcriptional regulator, FMN-binding domain" /codon_start=1 /transl_table=11 /product="protease synthase and sporulation protein PAI 2" /protein_id="YP_003919079.1" /db_xref="GI:308172374" /db_xref="GeneID:9779711" /translation="MYIPAPFQLSEADASNVIKEYGFATLFSTAGGMPYATHLPLMMS KDNHYLYGHFALPNPQWKEIEGQSVLAVFQGPHCYISPKWYETNQDVPTWNYVAVYVY GEAELLDNEETVHSMSDLVLKYESPDSPYKLEDIDAKLLAGLNKGVKGFKIKISKIEG KAKLSQNQSAARQELVVQQLKQIPHTNEQLISGLMEENIKRIAEKN" misc_feature 516567..517037 /gene="RBAM_005780" /locus_tag="BAMF_0483" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" gene complement(517358..518548) /gene="ydeR" /locus_tag="BAMF_0484" /db_xref="GeneID:9779712" CDS complement(517358..518548) /gene="ydeR" /locus_tag="BAMF_0484" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="efflux transporter" /protein_id="YP_003919080.1" /db_xref="GI:308172375" /db_xref="GeneID:9779712" /translation="MAKENKQTADQRISSGLTLLLATACGIIVANLYYAQPLAGSISA AIGLSPSSAGLIVTLTQIGYVAGLLFLVPLGDIIENKKLVVVSLLLSAAALTLTAFVK HGTLFLAAAFFIGLGSIAAQVLVPFASYLAPDAARGRVVGNVMSGLLLGIMLSRPISS LVADIWGWNAIFALSAALSVVLAIVLSKVLPARKPTANTNYNVLLGSMWKLLRTTPVL RRRAIYHAFVFGAFSLFWTTVPLLLSGPAFHFSQKAIALYALAGIAGAAAAPIGGRLA DRGLTRLATGIALGAVIVSLLLPLMIQSSSPVGIAVLVAAAILLDVGVSANLVLSQRS IFSLGPEVRSRLNGLFMAIFFLGGAIGSSIGGWAYASGGWSITLWIGITFPVIALLYF ATEK" misc_feature complement(<518033..518440) /gene="ydeR" /locus_tag="BAMF_0484" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene 518779..519366 /gene="ydeS" /locus_tag="BAMF_0485" /db_xref="GeneID:9780620" CDS 518779..519366 /gene="ydeS" /locus_tag="BAMF_0485" /function="16.3: Control" /codon_start=1 /transl_table=11 /product="TetR/AcrR family transcriptional regulator" /protein_id="YP_003919081.1" /db_xref="GI:308172376" /db_xref="GeneID:9780620" /translation="MIYVQSKRGRPRDEGTHKAILSAAYDLLLEKGFDAVTVDKIAER AKVSKATIYKWWSNKAAVIMDSFLSTATDRLPVPDTGSTVQDILTHATNLARFLTSRE GTVIKELIGAGQLDAKLAEEYRTRFFQPRRLQAKGLLEKGIQQGELRENLDIEVSIDL IYGPIFYRLLITGDEVNDSYVHDLVMNAFKGVQAT" misc_feature 518797..519345 /gene="ydeS" /locus_tag="BAMF_0485" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 518836..518967 /gene="ydeS" /locus_tag="BAMF_0485" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(519418..520302) /gene="ydeK" /locus_tag="BAMF_0486" /db_xref="GeneID:9780621" CDS complement(519418..520302) /gene="ydeK" /locus_tag="BAMF_0486" /function="16.1: Circulate" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_003919082.1" /db_xref="GI:308172377" /db_xref="GeneID:9780621" /translation="MNKAANGWINGFIGVLIFSGSLPATRLAVADFDPVFLTVCRAAI AGILAGALLLIFKEKRPAKSDIISLLTVAVGVVIGFPLLTALALQYVTSAHAIVYIGL LPLATAIFGVLRGGERPSPVFWIFSAAGSILVAGYALLQGGESSPLGDTYMIASIIVC GLGYAEGARLSRRLGNWQVISWALVLSLPLMFILSVCFIPHSWSNIGAPALLSLAYVS LFSMLIGFVFWYRGLAQGGIAAVGQLQLLQPFFGLLLAAMILHEKVGWGLAAVNVGVI ACVAAARRFANKSEKAEQ" misc_feature complement(519604..520098) /gene="ydeK" /locus_tag="BAMF_0486" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:162128" gene 520450..521841 /gene="ydeL" /locus_tag="BAMF_0487" /db_xref="GeneID:9780617" CDS 520450..521841 /gene="ydeL" /locus_tag="BAMF_0487" /function="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs" /note="rhizopine catabolism regulatory protein mocR;, Pyridoxal phosphate-dependent transferase, major region, subdomain 1, Bacterial regulatory proteins, gntR family" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_003919083.1" /db_xref="GI:308172378" /db_xref="GeneID:9780617" /translation="MDITPFLNRDLNIPLYQQLYRHFKENMHQGRIPKGLKLPSKRLL SSQLSVSQTTVERAYDQLAAEGYIVSKPRSGWFADYDSEAVYVKKKPGASPVQRKTEE VPQWIDFHYGAVDAVHFPFSAWRKSMVTSLDQYGHELYRPGDDLGEAELRTIISEYLY QSRGVNCLPEQVIVGAGNPILLQMLCNVFESNVSIGYEDPGYPRAREIFEANHMNITP IPVDEEGVCIRKLQEERPRLVYVTPSHQFTLGTIMPVNRRIQLLKWAAEHQAFIIEDD YDGEFRYTGRPIPSLQGLDQHHRVIYMGTFSQSLLPSLRISYMILPLPLIEKGREIAS LYKQTVSCHSQLTLAQFIKSGEWQKHINRMRKLYRKKRAVLLEAVRRELGQYVRIRGE NSGLRILLDVQLPFSEKELIEKANEQGVVIYPVSHTYQKQLPAKTVSLGFAGVSETDI QNGIKKLRAAWAL" misc_feature 520489..521832 /gene="ydeL" /locus_tag="BAMF_0487" /note="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:31361" misc_feature 520489..520680 /gene="ydeL" /locus_tag="BAMF_0487" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(520489..520491,520495..520497,520564..520566, 520570..520575,520597..520611,520615..520620, 520627..520629,520657..520662,520666..520677) /gene="ydeL" /locus_tag="BAMF_0487" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 520768..521826 /gene="ydeL" /locus_tag="BAMF_0487" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(520978..520986,521053..521055,521185..521187, 521281..521283,521362..521364,521368..521373, 521392..521394) /gene="ydeL" /locus_tag="BAMF_0487" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(520987..520989,521083..521085,521260..521262, 521386..521394,521479..521481,521488..521490) /gene="ydeL" /locus_tag="BAMF_0487" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 521371..521373 /gene="ydeL" /locus_tag="BAMF_0487" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(521898..522197) /gene="yraD" /locus_tag="BAMF_0488" /db_xref="GeneID:9780618" CDS complement(521898..522197) /gene="yraD" /locus_tag="BAMF_0488" /function="16.13: Shape16.5: Explore" /codon_start=1 /transl_table=11 /product="spore coat protein" /protein_id="YP_003919084.1" /db_xref="GI:308172379" /db_xref="GeneID:9780618" /translation="MNPIIEYLTGMDALTDQIVAMDLLNSAKSGVRNYAMAATEAGTP EVKAILTRHLEEALDMHEQISTYMMEKGWYHPWNTNEQIQLNLQNIDTVLRLPVL" misc_feature complement(521901..>522197) /gene="yraD" /locus_tag="BAMF_0488" /note="Coat F domain; Region: Coat_F; cl02368" /db_xref="CDD:194298" gene complement(522213..522410) /gene="yraE" /locus_tag="BAMF_0489" /db_xref="GeneID:9781425" CDS complement(522213..522410) /gene="yraE" /locus_tag="BAMF_0489" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003919085.1" /db_xref="GI:308172380" /db_xref="GeneID:9781425" /translation="MARALHELLEIQEMTSFKSLCLTKSKTMKALVSDPHLKEIMQQD VDTSTRQLQEFASILSDQQHE" gene complement(522430..523566) /gene="adhB" /locus_tag="BAMF_0490" /db_xref="GeneID:9781426" CDS complement(522430..523566) /gene="adhB" /locus_tag="BAMF_0490" /EC_number="1.1.1.-" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="YP_003919086.1" /db_xref="GI:308172381" /db_xref="GeneID:9781426" /translation="MKAVTYQGVKNVVVKDVPDPKIEKHDDMIIKVTSTAICGSDLHL IHGLIPNLQEDYIIGHEPMGIVEEVAPGVTKVKKGDRVIIPFNIACGECTYCKNHLES QCDQSNDNGDMGAYFGYSGSTGGYPGGQAEYLRVPFANFTHFKVPETCEEPDEKLSVI ADAMTTGFWSVDNAGVKEGDTVIVLGCGPVGLFAQKFCWLKGAKRVIAVDYVNYRLQH A