LOCUS NC_014365 3655731 bp DNA circular BCT 05-JUL-2011 DEFINITION Desulfarculus baarsii DSM 2075 chromosome, complete genome. ACCESSION NC_014365 VERSION NC_014365.1 GI:302341444 DBLINK Project: 51371 KEYWORDS . SOURCE Desulfarculus baarsii DSM 2075 ORGANISM Desulfarculus baarsii DSM 2075 Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus. REFERENCE 1 (bases 1 to 3655731) AUTHORS Sun,H., Spring,S., Lapidus,A., Davenport,K., Del Rio,T.G., Tice,H., Nolan,M., Copeland,A., Cheng,J.F., Lucas,S., Tapia,R., Goodwin,L., Pitluck,S., Ivanova,N., Pagani,I., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Han,C., Rohde,M., Brambilla,E., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Land,M. TITLE Complete genome sequence of Desulfarculus baarsii type strain (2st14) JOURNAL Stand Genomic Sci 3 (3), 276-284 (2010) PUBMED 21304732 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3655731) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (02-AUG-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3655731) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (21-JUN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP002085. URL -- http://www.jgi.doe.gov JGI Project ID: 4086435 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Desulfarculus baarsii Konstanz, DSM 2075 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: Germany num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: N/A finishing_strategy :: Level 6: Finished lat_lon :: N/A trophic_level :: N/A environment :: Mud sequencing_meth :: 454, Sanger isol_growth_condt :: N/A GOLD Stamp ID :: Gi03014 Culture Collection ID :: DSM 2075, ATCC 33931, VKM B-1802 Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Isolation Site :: Ditch mud; Germany rel_to_oxygen :: Anaerobe Temperature Range :: Mesophile Gram Staining :: gram- ##Metadata-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3655731 /organism="Desulfarculus baarsii DSM 2075" /mol_type="genomic DNA" /strain="DSM 2075" /isolation_source="ditch mud" /db_xref="taxon:644282" /country="Germany" gene 336..1664 /locus_tag="Deba_0001" /db_xref="GeneID:9495791" CDS 336..1664 /locus_tag="Deba_0001" /note="COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR013317:IPR013159:IPR010921:IPR018312:IPR 003593:IPR001957:IPR020591; KEGG: sfu:Sfum_0001 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; ATPase AAA; SPTR: A0LE53 Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein DnaA" /protein_id="YP_003805974.1" /db_xref="GI:302341445" /db_xref="GeneID:9495791" /translation="MPLGHWEILRRQLGEVIDPEEFKLWIDPLRPVESDGPGLVLACP NAFHRTWLRDHHLPRLRQLARQIDPEFKVTLAVLPGGQPGGQGRPAVARQLTLPSLGL DHPQLNSRYRFENYIAGGGNEYACAAAKAMANGQSFFGGALYLVSGTGLGKSHLTQAI GHHVLDGERPCRVSYLTAEDFANQMISALRAKRMEQFKDRFRRGCDVLLLEEVPFLAG KDKTQEELVYTLDALANAGKRIIFTGNQPPAQIKNLGRRLRSRLDGSVTVPIEPPDHQ TRVRILRSEAQRLGVVSPVEPLELLAEAISGDVRRLISALNGMAARSALTGRPMDLAL AAEVAGQLATELRRLSPERIRDEVARAYGLEPALLSGKSRKKEVTGPRNIAMYLCRRH TDSSLKSIGGLFNRDHSTVMYGVDKIDRLLAQDQKLAGQLRYIEQRLGLG" misc_feature 351..1652 /locus_tag="Deba_0001" /note="chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149" /db_xref="CDD:178902" misc_feature 654..1313 /locus_tag="Deba_0001" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1386..1652 /locus_tag="Deba_0001" /note="C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571" /db_xref="CDD:119330" misc_feature order(1455..1457,1479..1484,1503..1505,1521..1529, 1551..1565,1572..1574,1581..1586) /locus_tag="Deba_0001" /note="DnaA box-binding interface [nucleotide binding]; other site" /db_xref="CDD:119330" gene 1749..2480 /locus_tag="Deba_0002" /db_xref="GeneID:9492437" CDS 1749..2480 /locus_tag="Deba_0002" /note="COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179:IPR008104; KEGG: pca:Pcar_0774 FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; SPTR: Q3A6H4 peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase" /codon_start=1 /transl_table=11 /product="FKBP-type peptidyl-prolyl isomerase domain protein" /protein_id="YP_003805975.1" /db_xref="GI:302341446" /db_xref="GeneID:9492437" /translation="MKKIIFAALAIILVSGCALADGKPSFNTLEEKISYIIGFQFGAD MSKDQINVSPEVFLKGMKDGLAGNKSALDEKQAAAAMDEFRVKMMAQQQAKMKEQAAE NKKKGDAFRAEFKKKPGVKTLPSGVMYRVISAGKGPQPKPTDVVQAHYTGKLVDGTKF DSSEGREKPVSFPLDGVIPGWSEALQQMNKGAKWEIVLPPEAAYGDRQVGPMIGPGST LVFEVELVDFAAPKAEEAPAAQPQK" misc_feature 1788..2141 /locus_tag="Deba_0002" /note="Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346" /db_xref="CDD:189949" misc_feature 1815..2432 /locus_tag="Deba_0002" /note="FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]; Region: FkpA; COG0545" /db_xref="CDD:30891" misc_feature 2151..2426 /locus_tag="Deba_0002" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587" /db_xref="CDD:187101" gene 2732..4378 /locus_tag="Deba_0003" /db_xref="GeneID:9492438" CDS 2732..4378 /locus_tag="Deba_0003" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_3725 acyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FLQ8 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003805976.1" /db_xref="GI:302341447" /db_xref="GeneID:9492438" /translation="MAAPLSEQQRQLFEKIDKETNDFLMTRHNAVNRWVIGDMIRRSA YHYPDKLALIDGEIQRTYSQLERDSNQLAQALLGLGVQKYDRVAILAHNTYHHVLTWL GCAKIGAIYLAVNYLLRGPDIAYCINHSESKVFVIEDSLLELVDGVLGDMPTVRSFIW SAATGQGAMPAGFADFDAWRLAASDAAPQAILRIEDPAQMTYTSGTESRPKGVIISNQ ALIAQYMGCIIDAGYGPDDINVNALPIYHCAARDVFMNPIFWVGGTNVLMAPDLGQIL ANIEKHKATIFFAPPTVWIGLLRHPDFERRDLSSLKKCCYGASIMPVEILKEMMERLP GVEVYNFYGQTELAPYHTILKAQDALRKLGSAGKGGLHMESRLEGDDGQAIAAVGQPG EICGRGPHAMTMYFKEPDKTEEAMKGGWFHSGDLGVYDEENYITVVDRKKDMIKTGGE NVPSREVEEAIYLDRRVEEVAVIGLDHPKWVEAVTAVVVAKKGQAIDPDELIAHCRQH LAPFKTPKKVIVVEALPKTPTGKILKRQMRQDYKGVFADE" misc_feature 2801..4372 /locus_tag="Deba_0003" /note="acyl-CoA synthetase; Validated; Region: PRK08316" /db_xref="CDD:181381" misc_feature 2837..4360 /locus_tag="Deba_0003" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(4518..4724) /locus_tag="Deba_0004" /db_xref="GeneID:9492439" CDS complement(4518..4724) /locus_tag="Deba_0004" /note="InterPro IPR013429; KEGG: sfu:Sfum_3203 hypothetical protein; PFAM: regulatory protein FmdB; SPTR: A0LN74 Putative uncharacterized protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM: regulatory protein, FmdB family" /codon_start=1 /transl_table=11 /product="regulatory protein, FmdB family" /protein_id="YP_003805977.1" /db_xref="GI:302341448" /db_xref="GeneID:9492439" /translation="MPIFEYVCGRCGEQFEALILRADDKALCPKCGCDQARKLASGFA VGGGGPGLDGPGLASSGCGGGGFS" misc_feature complement(4611..4724) /locus_tag="Deba_0004" /note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS; cl00993" /db_xref="CDD:197419" gene complement(4801..5238) /locus_tag="Deba_0005" /db_xref="GeneID:9492440" CDS complement(4801..5238) /locus_tag="Deba_0005" /note="COGs: COG2927 DNA polymerase III chi subunit; InterPro IPR007459; KEGG: pca:Pcar_1548 DNA polymerase III, chi subunit; PFAM: DNA polymerase III chi subunit HolC; SPTR: Q3A4B4 DNA polymerase III, chi subunit; PFAM: DNA polymerase III chi subunit, HolC" /codon_start=1 /transl_table=11 /product="DNA polymerase III chi subunit HolC" /protein_id="YP_003805978.1" /db_xref="GI:302341449" /db_xref="GeneID:9492440" /translation="MELEFVNLKQCGRAPGEAVARLAAWHWRQGARVLILAADPRQAA GLDALLWTFDPASFVPHALAGGADQADEPVLISQEPANLNHASVLIMTKPPASPQAVP PGFQRVIVLIPLEDGPDLHACRDCFRLARDQGLNPAHATSLPL" misc_feature complement(4822..5199) /locus_tag="Deba_0005" /note="DNA polymerase III chi subunit, HolC; Region: DNA_pol3_chi; cl01106" /db_xref="CDD:194036" gene 5386..7338 /locus_tag="Deba_0006" /db_xref="GeneID:9492441" CDS 5386..7338 /locus_tag="Deba_0006" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR005467:IPR 009082:IPR004358; KEGG: dal:Dalk_2165 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: B8FF41 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_003805979.1" /db_xref="GI:302341450" /db_xref="GeneID:9492441" /translation="MNLAGRLWRSTRVRLIVSFVAVALLVGVASFLVGGRLLYEAVLS EAASRVRLDLNAAREIYQSRTRSIELALSVAIAGDQVQRLLTDGDAAALKAWLDRLAR EAGLDFLGLAARDGRVLARIGPGPLGGRDVDLPVVAQALAAGRPMGGTVVMDAASLAA EDPALARRAVVRPVATARADPAPEGARTEALCLAAAAPLSREGLALYGGVLLSRDKAI VDTVGQTVFKNESFAGRQLGTATIFLGDLRVSTNVRAPDGSRAIGTRASREVAEEVLG RGGVWSGRAFVAYDWQITAYEPIVDVNGQRVGMLYVGVLEAKYAGLWRQTLMVFALTT LACLVVAVGLGAYLAERITRPVNQLIAASERVARGDFSPEVGPIVRSDLGLLQRGFQE MLLALGERERRQQEESEKRLLQSEKQALVGRLAAGVAHEINNPLTGVLTFTHLLLRRG DLPAEVVHDLQTIAAQTERVRKIVKGLLDFSRQTKLEAQPSDLNPLVAAAVKLMTNQA LLKGVRLHFDPQEEFPVMNLDRSQMQGVLINMIINALDATPPGGEVAVITRPGDPARR GGRQGVEILVRDTGCGIAPEHLDKLFDPFFTTKEVGQGTGLGLAVSQGVVARHGGEIT VRSKPGQGSTFTIWLPEEIRSEGYDW" misc_feature 6373..6576 /locus_tag="Deba_0006" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 6649..6831 /locus_tag="Deba_0006" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(6655..6657,6667..6669,6679..6681,6688..6690, 6700..6702,6709..6711,6760..6762,6772..6774,6781..6783, 6793..6795,6802..6804,6814..6816) /locus_tag="Deba_0006" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 6673..6675 /locus_tag="Deba_0006" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 6991..7302 /locus_tag="Deba_0006" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(7000..7002,7012..7014,7021..7023,7111..7113, 7117..7119,7123..7125,7129..7134,7201..7212,7258..7260, 7264..7266,7279..7284,7288..7290) /locus_tag="Deba_0006" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 7012..7014 /locus_tag="Deba_0006" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(7123..7125,7129..7131,7201..7203,7207..7209) /locus_tag="Deba_0006" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 7357..7722 /locus_tag="Deba_0007" /db_xref="GeneID:9492442" CDS 7357..7722 /locus_tag="Deba_0007" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2166 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FF42 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003805980.1" /db_xref="GI:302341451" /db_xref="GeneID:9492442" /translation="MKVLVVDDDKVVLLSCRRVLEAAGHLTREAGGAEQALAILSAEP VDLVLADVMMPGVDGFALIERARRVAPSTPVVLMTGYLTPQIKQRGMAAGAAGFIAKP FTPDELLEGLARVMGPRQA" misc_feature 7405..7704 /locus_tag="Deba_0007" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(7507..7509,7531..7533,7591..7593,7648..7650, 7657..7662) /locus_tag="Deba_0007" /note="active site" /db_xref="CDD:29071" misc_feature 7507..7509 /locus_tag="Deba_0007" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(7516..7521,7525..7533) /locus_tag="Deba_0007" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 7657..7665 /locus_tag="Deba_0007" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 7769..9028 /locus_tag="Deba_0008" /db_xref="GeneID:9492443" CDS 7769..9028 /locus_tag="Deba_0008" /note="COGs: COG2116 formate/nitrite family of transporter; InterPro IPR001789:IPR000292:IPR011006; KEGG: dal:Dalk_2167 response regulator receiver protein; PFAM: formate/nitrite transporter; response regulator receiver; SMART: response regulator receiver; SPTR: B8FF43 Response regulator receiver protein; PFAM: formate/nitrite transporter; Response regulator receiver domain; TIGRFAM: formate/nitrite transporter" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003805981.1" /db_xref="GI:302341452" /db_xref="GeneID:9492443" /translation="MPEKMLVIDDDSAVIESCQRIFSAEGWEVTGSTDPAKGLELAAG QAFEVILVDWKMPGLSGMDVLSELEKRAPKSTVVMFSGYPSVERATEALKRGAMDYVP KPFRPDEIITVVTRALRRKVDQEQKALDRAARTIGAFPVPSSDDKAPKTIAETVAHSV GVSKVSSPWLTIFLLGVLAGAYIGFGGMLASSVSFDMAGHMGLGFTKFMTGAVFSLGL MLVVIAGAELFTGNNLMVSTVLEGQTTWGAVLARWVVVFVANFIGSLLIVLLFHYSGL WKTGGGALGAAALKLAYAKVGLGWGEAFVRGVGCNWLVCLAVWMALAARQTVGKIFAI FFPIMGFVAIGFEHCVANMYFIPAGILLRDWAGVAPPQGLDPALLGWGSFFWANLVPV TLGNIIGGTVFVGFSYWSVYLRKTKAA" misc_feature 7784..8122 /locus_tag="Deba_0008" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature 7784..8110 /locus_tag="Deba_0008" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature order(7793..7798,7925..7927,7949..7951,8009..8011, 8066..8068,8075..8080) /locus_tag="Deba_0008" /note="active site" /db_xref="CDD:29071" misc_feature 7925..7927 /locus_tag="Deba_0008" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(7934..7939,7943..7951) /locus_tag="Deba_0008" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 8075..8083 /locus_tag="Deba_0008" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 8213..9004 /locus_tag="Deba_0008" /note="Formate/nitrite transporter; Region: Form_Nir_trans; cl00927" /db_xref="CDD:193975" gene complement(9074..10543) /locus_tag="Deba_0009" /db_xref="GeneID:9492444" CDS complement(9074..10543) /locus_tag="Deba_0009" /note="COGs: COG0506 proline dehydrogenase; InterPro IPR002872; KEGG: bba:Bd1251 1-pyrroline-5 carboxylate dehydrogenase; PFAM: proline dehydrogenase; SPTR: B4VMU2 delta-1-pyrroline-5-carboxylate dehydrogenase, PFAM: proline dehydrogenase" /codon_start=1 /transl_table=11 /product="proline dehydrogenase" /protein_id="YP_003805982.1" /db_xref="GI:302341453" /db_xref="GeneID:9492444" /translation="MLFKRMTIGFLLALILAGALGLAAGGGLAGRGWPAAWAAAPSPS ALEAATVSQLGALEAALRAQLQGRAAGDQGVRMALIKLSMWGPLADVTGWFLAALGDS RTARRAFAWLMPFIKWMCEPFLLVVDNDDDELETAAEIDKIFAFVAREKAKGLLVSLD NVGDASLSPEDARQYRAYYLDLIRRFTAGQASVNDLNVSLKLSALVHDLDAALDGQGR SARAQAKRAEIAAALVELLRAAAAPGKKVFIRIDMEEYAYKDMTLALFRQVVEQNRAL ALDGQGDLRLGVVIQAYLRDAAPDVAALATWARAHGFRAPIRLVKGAYLEHERALAAG QGLAKSPVWNNKPSTDANYEALAEVMLRRADAIKPAFGTHNLRTIARVMAVADALGLE RHAYELQMLHGMGDPIKRVVVDAGRLMREYVPAGTLARGLKYAGRRFAELAGGQNALA RSMRGDFSVFAGAPAFEGEQDIIDGRATLALLAQTRAGH" misc_feature complement(9221..10105) /locus_tag="Deba_0009" /note="Proline dehydrogenase; Region: Pro_dh; cl03282" /db_xref="CDD:186561" gene 10815..11909 /locus_tag="Deba_0010" /db_xref="GeneID:9492445" CDS 10815..11909 /locus_tag="Deba_0010" /note="KEGG: dol:Dole_3245 hypothetical protein; SPTR: A9A0C9 Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003805983.1" /db_xref="GI:302341454" /db_xref="GeneID:9492445" /translation="MLTKNVFATRGGVIGVGAVIGVLAALLQYWGNPGNMGVCVACFE RDIAGAVGLHQAAVVQYMRPEIIGFVLGALIAAMAFGEFRPRGGSAPLARFFLGAFAM IGALVFLGCPWRALLRLAGGDGNALLGLAGLIVGIGLGTIFLRRGYNLGRAQKSPAAV GLLLPILMAGFLVLMFIYPQVAEQDKSGVLFYSLKGPGAMHAPLLVSLVVGLAVGFLA QRSRFCTMGAFRDLILFRQPHLFWGVLALLVFAFGSNLALGQFKAGFEGQPVAHTMGL WNFLGMLLAGLAFVLAGGCPGRQLFLAGEGDGDAAVFVLGMIVGAAFAHNFGLASSPA GIGPHGMAAVAVGLAVCLYLGFAMRGAKAA" gene 11938..12156 /locus_tag="Deba_0011" /db_xref="GeneID:9492446" CDS 11938..12156 /locus_tag="Deba_0011" /note="InterPro IPR001455; KEGG: tye:THEYE_A1506 hypothetical protein; PFAM: SirA family protein; SPTR: B5YGA5 Putative uncharacterized protein; PFAM: SirA-like protein" /codon_start=1 /transl_table=11 /product="SirA family protein" /protein_id="YP_003805984.1" /db_xref="GI:302341455" /db_xref="GeneID:9492446" /translation="MSQEIDARGLSCPQPVILTLEALKKMSGGQLEVLVDTDTSVENV SRAATSQGWRVEAVGQEADCYRLSLAKG" misc_feature 11947..12150 /locus_tag="Deba_0011" /note="SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response...; Region: SirA_like_N; cd03421" /db_xref="CDD:48207" misc_feature order(11950..11955,11962..11964,11971..11982,11986..11988) /locus_tag="Deba_0011" /note="CPxP motif; other site" /db_xref="CDD:48207" gene 12161..12712 /locus_tag="Deba_0012" /db_xref="GeneID:9492447" CDS 12161..12712 /locus_tag="Deba_0012" /note="KEGG: dol:Dole_3247 hypothetical protein; SPTR: A9A0D1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3343)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003805985.1" /db_xref="GI:302341456" /db_xref="GeneID:9492447" /translation="MGLFKAVKQALAGRVEPGRSLGRHGILVYANTSEVIRAEAALKE AGWLVSVKGPPPELRTGCDLVIEFPLVEELAILRLLDQAGLTPLQSAPVDGPLLRPVD LFQTVDYGRHLMIRAANMKLTVEKQSRRIVNVSGGGCPDVPYLAQEMIGKTLDEAPSP RQIGHTLCGYALQLAFEEMQRRC" misc_feature 12230..12427 /locus_tag="Deba_0012" /note="Protein of unknown function (DUF3343); Region: DUF3343; pfam11823" /db_xref="CDD:152259" gene 12706..13575 /locus_tag="Deba_0013" /db_xref="GeneID:9492448" CDS 12706..13575 /locus_tag="Deba_0013" /note="InterPro IPR000631; KEGG: dat:HRM2_44810 hypothetical protein; PFAM: protein of unknown function UPF0031; SPTR: C0QF36 Putative uncharacterized protein; PFAM: carbohydrate kinase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003805986.1" /db_xref="GI:302341457" /db_xref="GeneID:9492448" /translation="MLAVAGAIPWPELPVVEGLATLDGPRLLIDARPVAAVARGTAAL LAAAVSASQALGGPPVMAHLVGDIGAGQGSRALYAHLARILPERQYAALVFHYLQPDV DWHGRVLLAVEQMRPRPLLIADAGFMYAAKMGGMAPSYDLFTPDAGELAFLADEAAPH PFYTRGFILHEEAQAPALIARAHAHGNAARHLLVKGRKDYLASGPEAIEALPGPDCPV LECVGGTGDTLTGLAAALLAAGQPMARAARLAALTNRLAGQLANPTPASQIGEIIARI PAALALALRQIPA" gene 13572..13808 /locus_tag="Deba_0014" /db_xref="GeneID:9492449" CDS 13572..13808 /locus_tag="Deba_0014" /note="KEGG: adg:Adeg_0943 hypothetical protein; SPTR: C9RCV2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003805987.1" /db_xref="GI:302341458" /db_xref="GeneID:9492449" /translation="MSQGEAKQGLSGQSIVLDVIYQHRQTEAVFKDYERQTGRCICCQ SLFDTLEQAAQAHGLDLAELLARLRAAIAAGPTK" gene 13937..15727 /locus_tag="Deba_0015" /db_xref="GeneID:9492450" CDS 13937..15727 /locus_tag="Deba_0015" /note="COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873:IPR020845; KEGG: ade:Adeh_2886 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q2IDJ9 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003805988.1" /db_xref="GI:302341459" /db_xref="GeneID:9492450" /translation="MEKQNIAVIINGQIQKYGERAALKYKEDGAWREISWREMGRQVN AVARALIKLGLAEKQAVAIFAANSPWWTIADLGILNARCMVAPIHAPSTMGQAKYIVD DSNARLIFVGGQEQYAKVMKFFGQTEGLQTIVCFDRHVRLEQNPNIMYFDDFLALGQA AQDAGAEVEARLGRARADDLVTLIYTSGTTGEPKGVMLDHANFYHQYISLPERFAMFD SDRSLCLLPLSHVFERAWTYNALARGMTNHYCADPKQALEHMQEVKPHFVCMVPRFYE KIYSAVFNKLESAPENKRKLFHWALQTGLAAGRLRIDNKPLPLGLKLRHALADALVLK KIRQLTGGEIRVFPCAGAPLSPEIDEFFWAVGIFVCLGFGMTETTATVTCPSADHKRF GTCGTAIKDTELKLAPDGELLVRGPQVMRGYYNKPEETAKTLVDGWLYTGDVAAIDQD GFMSITDRKKDLMKTSGGKYIAPQPVENAVGKDHFVEQILLVADGRKFASALIVPCFE SLEQWAQANGVSFASRQELVDNPRVVEFYAQRVKELTKDLEKHEKIQKFILLPEEFTI EEGEMTPTLKLKRKVILAKYADRIEAMYKE" misc_feature 13973..15724 /locus_tag="Deba_0015" /note="Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Region: FAA1; COG1022" /db_xref="CDD:31225" misc_feature <14483..>14644 /locus_tag="Deba_0015" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature <15008..15370 /locus_tag="Deba_0015" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(15788..16291) /locus_tag="Deba_0016" /db_xref="GeneID:9492451" CDS complement(15788..16291) /locus_tag="Deba_0016" /note="COGs: COG2406 Protein distantly related to ferritins; InterProIPR008331:IPR009040:IPR009078:IPR012347:IPR 014490; KEGG: mhu:Mhun_0131 ferritin and Dps; PFAM: ferritin Dps family protein; SPTR: Q2FMS4 ferritin and Dps; PFAM: ferritin-like domain" /codon_start=1 /transl_table=11 /product="ferritin Dps family protein" /protein_id="YP_003805989.1" /db_xref="GI:302341460" /db_xref="GeneID:9492451" /translation="MGTRGREIIGMDVNVLLGMLNQALADEWFAYYQYWLGAKVVAGP MKDAVAAELLQHATDELSHAELVAGRIVQLGGVPVLEPKLWYDLSGCGYEPPADPYVQ LVLEQNIRGEQCAISTYDKMIKLTREADIVTYNMASTILEQEVEHEEDLQSLLEDLEL MIKRYNR" misc_feature complement(15857..16264) /locus_tag="Deba_0016" /note="DPS-like protein, ferritin-like diiron-binding domain; Region: DPSL; cd01052" /db_xref="CDD:153111" misc_feature complement(order(15860..15862,15956..15958,16103..16105, 16112..16114,16211..16213)) /locus_tag="Deba_0016" /note="diiron binding motif [ion binding]; other site" /db_xref="CDD:153111" gene 16511..17806 /locus_tag="Deba_0017" /db_xref="GeneID:9492452" CDS 16511..17806 /locus_tag="Deba_0017" /note="COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR016196; KEGG: dol:Dole_3001 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZZ31 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_003805990.1" /db_xref="GI:302341461" /db_xref="GeneID:9492452" /translation="MDQHCQARPSPYRWVVFGALAAAYVLVFFHRLCPSVVALDIMAD LGAGPALMGLLASAYFYPYAAMQMPAGLLADSWGPRRSVTLFFALAGVASILFGLAWS TAVAVAARVLVGLGVAMVFVPTMKIITCWFPRGQFALMAGLLLALGGLGAYVASAPLA MLSAAFGWRASFVVIGLISMVVGVAIWFLVRDNPADKGLPPAEARPCATEAPAIGLWQ GAMMVLGHGRFYPLAGWFISTGVVFFGLGGLWAGPYLAQTHGLGPADVGHVLSMMAVG MVLGSPLLSWLSDKVLRSRKAVLIGCAVGLCGLTAPLALAPADIPLWGLYLGSALLSV FCAAASGVGFIAAKELFPVEIAGTAVGLINFFPFLGGALGQPLLGWLLQRHGGRGPYA AAVYGQAFEWCLWIALAGLFCALFCTETWGRPAPTEGDH" misc_feature 16544..17773 /locus_tag="Deba_0017" /note="Sugar phosphate permease [Carbohydrate transport and metabolism]; Region: UhpC; COG2271" /db_xref="CDD:32452" misc_feature 16559..17692 /locus_tag="Deba_0017" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(16601..16603,16610..16618,16622..16627,16676..16678, 16685..16690,16697..16699,16709..16714,16718..16723, 16859..16864,16871..16876,16883..16888,16895..16897, 16931..16936,16943..16948,16964..16966,17228..17230, 17237..17242,17249..17251,17255..17257,17264..17266, 17306..17308,17318..17320,17330..17332,17339..17341, 17351..17353,17507..17509,17516..17521,17528..17530, 17540..17545,17552..17554,17585..17590,17597..17602, 17609..17614,17621..17623) /locus_tag="Deba_0017" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 17837..18829 /locus_tag="Deba_0018" /db_xref="GeneID:9492453" CDS 17837..18829 /locus_tag="Deba_0018" /note="KEGG: bba:Bd1662 hypothetical protein; SPTR: A3ZNI2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003805991.1" /db_xref="GI:302341462" /db_xref="GeneID:9492453" /translation="MKRLLIAALAVAVSLAGGVALAADSAFLQLLRPKMGQVKAKAAY SGMFWSEVDVQGSSTSFAMNKQELSAMTPLMQDDGQELALWLDADVRNVDSDLFLPEV NRTFPDELWDLNLALSYRRKLGQNWIGGVRGSFGSASDKPFNSADELTYNAMGFARRE LDKQNALLFFLFYSSSMDFLPGVPYPGVAWQYTAADRSLDLTIGLPMLMATYRPVDPL KLSVAYYPLRNVFGEAAWSFTKQWSTFGRFTWTYQDYLLADRPRDENRLFYYEKRAVI GVGFKPLPGANIELSGGRAFDRLMFQGQNHGDEDQNRIELDDGWLVHLVGSMRF" gene complement(18815..22477) /locus_tag="Deba_0019" /db_xref="GeneID:9492454" CDS complement(18815..22477) /locus_tag="Deba_0019" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013767:IPR003018:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000014:IPR011006:IPR009082:IPR019825:I PR004358; KEGG: dal:Dalk_2518 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; response regulator receiver; SPTR: B8FFF1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003805992.1" /db_xref="GI:302341463" /db_xref="GeneID:9492454" /translation="MNASQYIAGLRPGPWAVFKKALLIFAPLMVISLAVLAELYHAET AADMVASRRMEMEAATAGQRAIQRVFAPVVDDLRFLAGLVERRLAAADRSAALAELAS ELTLFAASHPDYDQLRFVDVAGRERARVDRVGGRVKATAPGELQDKSRRYYFRRSIGL GRGGIYVSPLDLNVERERVEQPLKPMIRLAQPVFGPDGHKLGVVVINYLAAKLLEQLR QVGRPAPSALMLLNNQGHWLMGPDPEDEWGFMLPGKEKRTLANAQPQAWREISGREQG QAQTAAGLYSFVTARPLSELRAAGQGEYFWKVVSFLPAGAMSAKAEAWRDWGLLVAAA LAFVWGLTAWGLAWAWEQRRATTEALRQANDDLERRVVARTAELSQAYQNARDEMAQR MEAQKALRASEEKYRTMMQAMEDAVYICSEAFVIEYMNPAMIRRLGRDATGELCHQAL YHRPDVCPWCVMGVIKKRRHVNYQLDDELYNAVYHVSNDPLIHESGALSKLTVFRDVT KLKEQELALRESAELYHNLFQSMLHGVVYRDAQGRIVSANPAAEKILGIVLQHTTEGL APESIPELFREDGAAMPPEEHPYEVAMRTGKEVRGVVMGVRNPHTKNVIWITVNAVPL FRPGDEKPHQVFTTFEDVSGQIRDRRVRQARLRLLELSADCDSDTLLQKTIDMAEELT GSEIGFYHFVSEDEKTLQLQVWSSNTLATMCTAKVEKAHYPVDKAGVWVDCLLRRRAV IHNDYMSLPHRRGLPEGHAPVRGELVAPVFRQGRIVAILGVGNKPGDYLEGDVAVVAQ LADLAWDIVERKRAQETHARLEDQLRQAQKMEAIGTLAGGIAHDFNNILSAIIGYSEL AASDLPEGHPVQEYLEAVLNAGGRAAELIKQILSFSRQAKRERQPVAVTPIVKEVIKL MRASAFGSIEVRQRFSADADLVLADPTSLHQVVMNLCTNARQAMLETGGVLTVELDSP IINAEDAARYDIQQGHFLRLSVSDTGVGMDQATLGRIFEPFFTTKEQGKGTGLGLSVL HGIVKDLGGSIRVYSESGRGSVFQVYLPLLASQAQRAAAPERQALAGGSERIMFVDDE EALVDIGRQILAPLGYEFFGFTSPEQALAAFRAAPDGFDLIFTDQNMPGRSGLEMALE MMRLRPELPVILCSGFSEQVSAEKALELGFKAFLYKPILTSQMVAAIRQALDEARTPT LTAEGPADAAPALEAH" misc_feature complement(<21266..>21928) /locus_tag="Deba_0019" /note="Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]; Region: COG4191" /db_xref="CDD:33926" misc_feature complement(<20546..21265) /locus_tag="Deba_0019" /note="Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]; Region: RocR; COG3829" /db_xref="CDD:33622" misc_feature complement(19799..19993) /locus_tag="Deba_0019" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(19814..19816,19826..19828,19835..19837, 19847..19849,19856..19858,19868..19870,19919..19921, 19928..19930,19940..19942,19949..19951,19961..19963, 19973..19975)) /locus_tag="Deba_0019" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(19955..19957) /locus_tag="Deba_0019" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(19310..19651) /locus_tag="Deba_0019" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(19319..19321,19325..19330,19343..19345, 19349..19351,19397..19408,19475..19480,19484..19486, 19490..19492,19496..19498,19610..19612,19619..19621, 19631..19633)) /locus_tag="Deba_0019" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(19619..19621) /locus_tag="Deba_0019" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(19400..19402,19406..19408,19478..19480, 19484..19486)) /locus_tag="Deba_0019" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(18896..19234) /locus_tag="Deba_0019" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(18887..19225) /locus_tag="Deba_0019" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(18929..18934,18941..18943,18998..19000, 19058..19060,19082..19084,19217..19222)) /locus_tag="Deba_0019" /note="active site" /db_xref="CDD:29071" misc_feature complement(19082..19084) /locus_tag="Deba_0019" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(19058..19066,19070..19075)) /locus_tag="Deba_0019" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(18926..18934) /locus_tag="Deba_0019" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(22641..24107) /locus_tag="Deba_0020" /db_xref="GeneID:9492455" CDS complement(22641..24107) /locus_tag="Deba_0020" /note="COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: dat:HRM2_48490 outer membrane protein; PFAM: outer membrane efflux protein; SPTR: C0QIF3 Outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" /codon_start=1 /transl_table=11 /product="RND efflux system, outer membrane lipoprotein, NodT family" /protein_id="YP_003805993.1" /db_xref="GI:302341464" /db_xref="GeneID:9492455" /translation="MTSPGKIALAAAVVAVGLISAGCAAVGPDYQAPSPQTPPAWRAT MTGGLEAATPQAQALAQWWARFDDPLLTELIGQSLAGNLDIKTARAKVRQARAARGLS QAALWPELSADGAFESRRASENSRSGSGGQYDLYSGGFDAGWEIDIFGGARRGVEAAQ ADLEAAQADLRDVWVSICAETARNYVEARTYQARLAAMRANLEAQTKTHALIAARRAA GLSNELALRQAGYNLESSRAQLPGLQAGLESSLNSLAILAGRTPGSLHQRLAEVRPIP QCPPRVAVGVPAEALRQRPDIRAAERRLAAQTARVGVATAALYPKLRLLGSIGLESVS SGELFSAASQAWGIGPAVSWKIFDAGAVRQNIAIQSSLQEQALLAYQKAVLAALAEVE DNLTAYAREQLRAQSLAKAVEEARRAEAIAQDQYRAGLVDFNNVLEAQRSLLQLQDQL AQSRGAVTSDLITVYKALGGGWNALAEDQRTTAKNPRR" misc_feature complement(22695..24035) /locus_tag="Deba_0020" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature complement(23331..23897) /locus_tag="Deba_0020" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(22794..23246) /locus_tag="Deba_0020" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(24104..27247) /locus_tag="Deba_0021" /db_xref="GeneID:9492456" CDS complement(24104..27247) /locus_tag="Deba_0021" /note="COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR000731:IPR004764; KEGG: dde:Dde_0401 hydrophobe/amphiphile efflux-1 HAE1; PFAM: acriflavin resistance protein; SPTR: Q316E4 Hydrophobe/amphiphile efflux-1 HAE1; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family" /codon_start=1 /transl_table=11 /product="transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" /protein_id="YP_003805994.1" /db_xref="GI:302341465" /db_xref="GeneID:9492456" /translation="MISKLFIDRPRLAVVISLVITLAGLIALLNISVAQYPKITPPEI VVRATYPGASAEVVAQSVAAPIEAQVNGVEDMIYMTSTSGNDGSYSLTVTFDADANAD IAQVNVLNRLKQAESKLPNEVVAQGLTVRARSSDMLAIINFFSPKGTRDQLFLSNFVS INVQDALARINGVSDANIFGELSYSMRVWMDPERLAALGLSASDINQAIASQNIQAAA GALGSSPGPAGQQLQYPLRAKGRLVTVEDFSNIVVRVNKDGGVLRLGDVARVELGAQS YAGNNLLDGAPAVPLGIYQSSDANALETMDQVRAELERLARTFPDDIEYRLTMDATLF VRATIHEIVLTLLMTFVLVVGVTFLFLQDWRATLIPTLTIPVSLIGAFAALLALGYSA NIITLFALILAIGVVVDDAIVVVENVQRILDEERIDAKSATIKAMGQVTGPIIAATLV LLAMFLPVAFLPGITGRLYQQFAVTICFAVLLSGVCALTLSPALCALILRPAAGGHQA RRGPLGWFEALLGRSRNGYVRGAGWLAGRRALTLGLLALVLTGGYLLFVGSPTSFLPD EDQGLFYLEIQLPPTASLERTSLVSRQIHAAIKDTPGIAAVTNINGRSALSGTGENLG RAVIMLKPWDERTADDEQLPAIIKAVQARVAAIPAADIRVITPPAIRGMGSVGGFDFR LQAFGDQTPQDLAAVTGAMVVAANQDPNIQRAFSSFTADAPQIYIDLDRVKAQSLGVP VGRVFETLQAQLGSKYVNDFNLFNRVYQVKIQADAPYRDAPEAIGQLYVRSDSGAMTP LSTLVSLKITTGPQVIYRYNQFPSTQINGAAAEGKSSGQAMDAMAALARRTLPQGYGF DWSGLSYQEQQAGGQTVAIFLTALLFGYLFLVAQYESWSIPLTVILSISVAVLGALAG LFIFGRALSIYGQIGLVLLLGLASKNAILIVEFAKTSREAGAPIVQAALDGARVRFRA VLMTAFSFILGVFPLVVATGAGAASRRDIGVTVFFGMLAATMLGIFLIPPLFVVLQGW REGLKDFVRARRGGTKP" misc_feature complement(24161..27244) /locus_tag="Deba_0021" /note="The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915" /db_xref="CDD:162104" gene complement(27259..28374) /locus_tag="Deba_0022" /db_xref="GeneID:9492457" CDS complement(27259..28374) /locus_tag="Deba_0022" /note="COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dde:Dde_0402 secretion protein HlyD; PFAM: secretion protein HlyD family protein; SPTR: Q316E3 Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_003805995.1" /db_xref="GI:302341466" /db_xref="GeneID:9492457" /translation="MPQTKPSRHASPCLLATILLLIVTAAQAAPPGGPPAVIVAAARQ KDLQATSRHVGRVEAMQSVDLRARVQGYLERIAFREGGLVRAGQTLFVIEQASYRNQV AADRAKAAQAQAALAQAEQYLARLKSAGAGSVSAADMEQAISVQLQAKAAVAQAQANL AQAELNLGYATVKAPIAGRIGRAAYTVGNLVGPESGALARIVQVDPIRVVYSISETEL PQRGRENAAQREAGRQVRLLLGQGHDYPIVGKVEFIDNEVDPATGTIAVRAVFANPEG LLTPGQFVTVNESSGPAKPVVLAPQSAVLEDQDGRHVFVVDGQNIASKRPVVTAGQSG PDWVIASGLAAGELIVVQGVQKVRPGQAVKPVADAGR" misc_feature complement(27277..28248) /locus_tag="Deba_0022" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene complement(28398..30416) /locus_tag="Deba_0023" /db_xref="GeneID:9492458" CDS complement(28398..30416) /locus_tag="Deba_0023" /note="COGs: COG4651 Kef-type K+ transport system predicted NAD-binding component; InterPro IPR006153:IPR003148:IPR006037:IPR016040; KEGG: dvm:DvMF_1119 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; SPTR: B8DKB1 Sodium/hydrogen exchanger; PFAM: TrkA-N domain; TrkA-C domain; Sodium/hydrogen exchanger family; TIGRFAM: potassium efflux system protein" /codon_start=1 /transl_table=11 /product="sodium/hydrogen exchanger" /protein_id="YP_003805996.1" /db_xref="GI:302341467" /db_xref="GeneID:9492458" /translation="MGILLDLVVILGLSLGVIYVFHRLGIPNIVGFLIAGALAGPHGL GLVSGVHEVELMAEVGVVLLLFTIGLEFSIKDLMQIKDVVFIGGALQVLGAMALGAGA AHLLGLNWNTEIFVGFLLALSSTAIVLNLLRERSALDTPAGRICLAILIFQDIAVVPM MLAVPFLAGGHVNGADMWLMLQKGLAAVAALLVLGRWLAPWAMARVADTRSREMFLIS VVTMCLGVAALTWWAGLSLALGAFAAGLIISSSPFGLQAVGSILPMRDLFISIFFISM GMLVEPAYFVHHPVLVLTVTALVLILKQASAGVAVLFLGHGLRVAGSTALSIGQIGEF SFVLAQIGLNAKLLDSNGYNLFLATAIMTMVLTPFMLSLGFRLGEKSPAWLSAIGLGG YWSPSWGGPDRQGGDDEGHAAHDGHAAQVVVIGYGLAGRNVVRAARLAGLPFLVVEMN PHTVRQQSALGLPIVFGDASNPAVLAHAGLAHAKILVVSMGGSVVARRIVAAAKSINP TLHVIVRTRYESEVEGLRKVGADEVIPEEYETALEIFTRVLRRLRAPESEIATLLAQL RRQDYNSLRDVNPGGEGGEQRLSGLFDDTEILTFRLDERSPLVGRSLGQANLRKDHGV TVVAIKRPDGVAASPGADELLAGGDMLVVMGPPGKVAAMGRLFGAPPS" misc_feature complement(28794..30353) /locus_tag="Deba_0023" /note="putative cation:proton antiport protein; Provisional; Region: PRK10669" /db_xref="CDD:182633" misc_feature complement(29268..30353) /locus_tag="Deba_0023" /note="Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482" /db_xref="CDD:164194" misc_feature complement(28413..29159) /locus_tag="Deba_0023" /note="K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]; Region: TrkA; COG0569" /db_xref="CDD:30915" misc_feature complement(28815..29156) /locus_tag="Deba_0023" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(28413..28628) /locus_tag="Deba_0023" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene 30788..31951 /locus_tag="Deba_0024" /db_xref="GeneID:9492459" CDS 30788..31951 /locus_tag="Deba_0024" /EC_number="3.13.1.1" /note="COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: noc:Noc_1509 UDP-sulfoquinovose synthase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-sulfoquinovose synthase; SPTR: Q3JB02 UDP-sulfoquinovose synthase; PFAM: NAD dependent epimerase/dehydratase family" /codon_start=1 /transl_table=11 /product="UDP-sulfoquinovose synthase" /protein_id="YP_003805997.1" /db_xref="GI:302341468" /db_xref="GeneID:9492459" /translation="MKVIILGADGFCGWPTTLHLSAHGCDVVMVDNLSRRNIDNELEV RSLTPISFMGERIAAWREISGRCLAYHNFDVAKNYKRLLSLIEQEKPEAIVHFAEQRS APYSMKSPRHKRYTVDNNLNATNNVLCAIVESGLDVHLVHLGTMGVYGYGTAGMQIPE GYLPVKLEVAPGVLVEKEILYPPDPGSIYHMTKTQDALLFYYYNKNDGVRVTDLHQGI VWGTQTAETAVDERLINRFDYDGDYGTVLNRFLMQAAVGHHLTVHGTGGQTRAFIHIQ DTVRCIELAIRNPPLSGDRVNILNQQTETHQVRALAEKVRQITGAEIAFVKNPRVEAS ENALQVANDKFLSLGLNPITLDDGLLTEVTEIAMKYRHRVDLSKIPCTSLWRP" misc_feature 30788..31945 /locus_tag="Deba_0024" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 30788..31864 /locus_tag="Deba_0024" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature order(30806..30808,30812..30817,30821..30823,30878..30886, 31076..31084,31214..31222,31352..31354,31364..31366, 31433..31444) /locus_tag="Deba_0024" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(31145..31147,31220..31222,31352..31354,31364..31366) /locus_tag="Deba_0024" /note="active site" /db_xref="CDD:187535" gene 32036..33004 /locus_tag="Deba_0025" /db_xref="GeneID:9492460" CDS 32036..33004 /locus_tag="Deba_0025" /note="COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073:IPR005945:IPR002410; KEGG: mpl:Mpal_1914 proline-specific peptidase; PFAM: alpha/beta hydrolase fold; SPTR: B8GKS2 proline-specific peptidase; TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; TIGRFAM: proline-specific peptidases, Bacillus coagulans-type subfamily" /codon_start=1 /transl_table=11 /product="proline-specific peptidase" /protein_id="YP_003805998.1" /db_xref="GI:302341469" /db_xref="GeneID:9492460" /translation="MKPGAWLMTALIAFALAGQALAAGGGKPVEGFVDTRDGRVFYRI HGQGKPGLPLLVVHGGPGANMQYLRPLAALADQRPVIFYDQLGGGDSDRPDDPALWNT ARFVDELDQVRRALGLRRLFIVGQSWGAMLATQYVLSHGQEGVAGLILSGPLLSAPRW IADQRLLLAQTPPAIRQAVEKAEAAQSYDSPEYQRAMDVYYRRHLCRLDPWPDFLQES FARLALPVYLAMWGPSEFTCLGSLKEQDLSPRLGELLMPVLYVCGRFDEARPETVGWF AAQTPQGRLVVIEGASHSHHAERPEQFNQALRDFMAEVEASHRPLK" misc_feature 32114..32968 /locus_tag="Deba_0025" /note="proline-specific peptidases, Bacillus coagulans-type subfamily; Region: pro_imino_pep_2; TIGR01250" /db_xref="CDD:188121" gene 33104..34651 /locus_tag="Deba_0026" /db_xref="GeneID:9492461" CDS 33104..34651 /locus_tag="Deba_0026" /note="COGs: COG0029 Aspartate oxidase; InterPro IPR003953:IPR015939:IPR005288:IPR013027; KEGG: gau:GAU_0434 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C1A5G6 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase" /codon_start=1 /transl_table=11 /product="L-aspartate oxidase" /protein_id="YP_003805999.1" /db_xref="GI:302341470" /db_xref="GeneID:9492461" /translation="MDVADCLVIGAGVAGLSAALEAAQHGRVIVLCKGAPADSNTFHA QGGVAAALMPGDSPADHAADTIAAGAGLCDARAVEALCAEGPERVLHLAGLGCPFDRQ ADGAFRAAMEGAHQRARVIPALGDATGRAIAQTLLAQLPGQPRIEPRPGARVLELLLE SGRCRGLLAIDETGRPHVYLARAVILASGGCGRLFARTTGPFCDGQGLAMAARAGAVL ADMEFVQFHPTALDAPGADPLPLVSEAVRGHGAHLIDDQGRRFMPGEHPMAELAPRDV VARAIFRRLAAGRRVFLDARMFGDHFAARFPQVNALCQRHGLDPARDPLPVTPAAHFL MGGVACDLDGATTVPGLFACGECARVGVHGANRLASNSLLEGLVFGRRAGRAAFRRPA PAPPLQGQAVTPAQLTRWLPPGVSLERCLPGHDDGQEPAIARLRQLMWRDVGLIRHED GLARAAAQVARLAREAAPGQISLANMCAVAEAIIAAARQRKTSVGAHFRADGPAMASG LAQGAAS" misc_feature 33110..34237 /locus_tag="Deba_0026" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 33116..34621 /locus_tag="Deba_0026" /note="Aspartate oxidase [Coenzyme metabolism]; Region: NadB; COG0029" /db_xref="CDD:30379" gene 34648..35508 /locus_tag="Deba_0027" /db_xref="GeneID:9492462" CDS 34648..35508 /locus_tag="Deba_0027" /EC_number="2.4.2.19" /note="COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR002638:IPR004393:IPR013785; KEGG: bpt:Bpet0626 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: A9I465 Nicotinate-mononucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide pyrophosphorylase" /protein_id="YP_003806000.1" /db_xref="GI:302341471" /db_xref="GeneID:9492462" /translation="MNELLMRRAIEGFLAEDLGRGDITSTAVVAEDSWATGRFVCKDQ GVLAGLPAARMVFALLDGAVEFTPLLAEGAPLRPGQALATVRGPARAILAGERLALNL LQRASGVASLAAQAVAAVQGHKAKILDTRKTTPGLRWLEKYAARVGGAVNHRFGLDDA VLIKDNHLALAGGVGPALARAKAAVGPMVVIEVEVESLEQLAQALEAGAGVIMLDNMP AALMAQAVKLCAGRAVLEASGGLDLARLAEVAATGVDYISMGWLTSGAKPLDIGLDLE PAASGGPARS" misc_feature 34666..35469 /locus_tag="Deba_0027" /note="Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-...; Region: QPRTase; cd01572" /db_xref="CDD:29619" misc_feature 34672..35472 /locus_tag="Deba_0027" /note="nicotinate-nucleotide pyrophosphorylase; Region: nadC; TIGR00078" /db_xref="CDD:161695" misc_feature order(34717..34722,34933..34938,34948..34950,35038..35040, 35044..35046,35056..35061,35116..35121,35131..35133, 35137..35139,35143..35148,35155..35157,35188..35190, 35437..35439) /locus_tag="Deba_0027" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29619" misc_feature order(35035..35043,35104..35109,35290..35292,35359..35364, 35419..35421,35425..35430,35437..35439) /locus_tag="Deba_0027" /note="active site" /db_xref="CDD:29619" gene 35511..36602 /locus_tag="Deba_0028" /db_xref="GeneID:9492463" CDS 35511..36602 /locus_tag="Deba_0028" /note="COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: dhd:Dhaf_0917 quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: B8FY93 Quinolinate synthetase complex, A subunit; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit" /codon_start=1 /transl_table=11 /product="quinolinate synthetase complex, A subunit" /protein_id="YP_003806001.1" /db_xref="GI:302341472" /db_xref="GeneID:9492463" /translation="MPQICPKLLADPGPAAEPFARETIRRLGQVRAQLGRRALILGHH YMSDAVIGWADAVGDSLALSRLAATQKEAEFIVFCGVHFMAETADILAGQGRRVILPD GGAGCPMADMAAPEQVEQCWQELARLGHGPIIPITYVNSSARLKAFCGRHGGAVCTSS NARAVLAWALGQGRRALFFPDQHLGRNTALALGLTPREIAMWRRDAAVLEGEAAQARV IVWDGFCPVHVEFGPADVARARARQAGVKVVVHPECPSQVVALADDSGSTEKIIGLVE AAPAGSAWAIGTEINLVRRLAARFADKTIFSLNESVAGCPDMAKISPTNLLASLEAIL DGKPRGVVGVDEATARQAAVALERMFAVS" misc_feature 35526..36599 /locus_tag="Deba_0028" /note="Quinolinate synthetase A protein; Region: NadA; cl00420" /db_xref="CDD:185987" gene 36589..37131 /locus_tag="Deba_0029" /db_xref="GeneID:9492464" CDS 36589..37131 /locus_tag="Deba_0029" /note="COGs: COG1827 small molecule binding protein (contains 3H domain); InterPro IPR013196:IPR004173:IPR011991; KEGG: dae:Dtox_2254 helix-turn-helix type 11 domain protein; PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; SPTR: C8VZU0 Helix-turn-helix type 11 domain protein; PFAM: HTH domain; 3H domain" /codon_start=1 /transl_table=11 /product="3H domain protein" /protein_id="YP_003806002.1" /db_xref="GI:302341473" /db_xref="GeneID:9492464" /translation="MPFHSPLSPPLHDRRAQILALLADGRQPLTGGELSARLGVSRQV IVQDMAILRAEGHDIVATPRGYLMPEANGPRGRRAVLACRHDASRVEEELCVMVDHGL MVVDVIVEHAFYGELRGNLMLCSRVDVGRFMARMSERRAQFLSALTGGVHLHTVEHAD QAAFDQAVAELGRRGLLVTP" misc_feature 36625..37122 /locus_tag="Deba_0029" /note="Predicted small molecule binding protein (contains 3H domain) [General function prediction only]; Region: COG1827" /db_xref="CDD:32012" misc_feature 36628..36786 /locus_tag="Deba_0029" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 36829..37122 /locus_tag="Deba_0029" /note="3H domain; Region: 3H; pfam02829" /db_xref="CDD:145798" gene complement(37128..38909) /locus_tag="Deba_0030" /db_xref="GeneID:9492465" CDS complement(37128..38909) /locus_tag="Deba_0030" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003661:IPR003594:IPR005467:IPR 000014:IPR009082:IPR004358; KEGG: cag:Cagg_2683 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: B8G4S5 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor signal transduction histidine kinase" /protein_id="YP_003806003.1" /db_xref="GI:302341474" /db_xref="GeneID:9492465" /translation="MSMATAEQLAVLAQAMEHSPTAWAVTDEEGRVRRHNAAFAALLG LESGQEAAGRPWSHLSPVARRAEESALLRQAGQDGRAVSTHKALVQRDGGLITVVDAA HPCQNGGFWHLLSPAVNRPGLVNGRCQAMLEAFDDPIYVCDQDHNIEFLNQAMIRRLG RDATGEKCHQAIHGLDDVCPWCEGQKVQNGQTVRQEMQRSSDSRWYNVVCTPVFLPDG RVARQTVFRDVTSQKLLEQHLRHALDSQRVLFESLPVGVLAVDEHYNVTQINPAAQKI LGVNANQALGRYCHDVMGCDNDPLCPLRRSAAEGRTAGPDDWHVRDSRGALVDVRMWA AAIFDSDGRHLGGVEAFQDISEAKALERHRARIIAMLAHDMKTPLISIRGFANLLLRD EDQAHAKNRRKYAQFIEQEAARLDGFVHRFLEMSRLQDGALKLKPERLDLAERLAGVV EAVRPQFRAANVELLLEAPAPAPVEADAELLGRIFDNLLDNALQHSPTGGQVHVSVIA EGGEAQVRVRDQGSGIPADELSLIFEPFFRGSNSKTTQGYGLGLAAAKAIACLHGGRL VVDSQPGHGALFTLRLPISRPSQAAAD" misc_feature complement(<38616..38855) /locus_tag="Deba_0030" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(38631..38633,38646..38648,38724..38735, 38775..38777,38793..38795,38805..38807)) /locus_tag="Deba_0030" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(38694..38699,38706..38708,38730..38732, 38742..38744)) /locus_tag="Deba_0030" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(37827..38498) /locus_tag="Deba_0030" /note="FOG: PAS/PAC domain [Signal transduction mechanisms]; Region: AtoS; COG2202" /db_xref="CDD:32384" misc_feature complement(<38031..38171) /locus_tag="Deba_0030" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(37164..38159) /locus_tag="Deba_0030" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature complement(37629..37829) /locus_tag="Deba_0030" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(37644..37646,37656..37658,37665..37667, 37677..37679,37686..37688,37698..37700,37755..37757, 37764..37766,37776..37778,37785..37787,37797..37799, 37809..37811)) /locus_tag="Deba_0030" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(37791..37793) /locus_tag="Deba_0030" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(37164..37463) /locus_tag="Deba_0030" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(37176..37178,37182..37187,37200..37202, 37206..37208,37254..37265,37338..37343,37347..37349, 37353..37355,37359..37361,37428..37430,37437..37439, 37449..37451)) /locus_tag="Deba_0030" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(37437..37439) /locus_tag="Deba_0030" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(37257..37259,37263..37265,37341..37343, 37347..37349)) /locus_tag="Deba_0030" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(39014..40174) /locus_tag="Deba_0031" /db_xref="GeneID:9492466" CDS complement(39014..40174) /locus_tag="Deba_0031" /EC_number="1.3.99.10" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR009100:IPR 009075:IPR006089:IPR013786:IPR013764; KEGG: mxa:MXAN_3048 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; PRIAM: Isovaleryl-CoA dehydrogenase; SPTR: A1ZFB4 Acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_003806004.1" /db_xref="GI:302341475" /db_xref="GeneID:9492466" /translation="MHSIYFGPEHHEFRRNVRRFVENEIAPHADQWEQARAIPRQAFR RMGELGFLGVCFPEEYGGAEGDIFMAMALLEELARSRMGGFAAAVAVQQFMAPQHIHK YGSEELKRKYLAGSISGEMVGALGVTEPGAGSDVAAIRAKASRQGDHYLINGAKTFIT NGADGHFITLACKTEPGAGARGISLIVVDLDAPGVSCTRRLEKMGWHASDTAELTFED VRAPLANLVGQENKGFYYIMQAFQLERLACAAMGLGLAQLCLEHAVKYMGERNAFGAP LSNLQALAHRLAELSARQEAARQLTYHAAWLYQNDLPCVAQCSMAKLLACELAKRVAD ECLQFFGGYGLMEEYPMARLLRDSRLGTIVAGTSEVMREIIARLSFGRADYK" misc_feature complement(39017..40159) /locus_tag="Deba_0031" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(39044..40153) /locus_tag="Deba_0031" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(39071..39073,39077..39079,39083..39091, 39695..39697,39701..39703,39794..39796,39800..39802, 39896..39898)) /locus_tag="Deba_0031" /note="active site" /db_xref="CDD:173838" gene complement(40192..41910) /locus_tag="Deba_0032" /db_xref="GeneID:9492467" CDS complement(40192..41910) /locus_tag="Deba_0032" /note="COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterProIPR001753:IPR006176:IPR008927:IPR016040:IPR 013328; KEGG: hoh:Hoch_3456 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; SPTR: D0LW26 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: enoyl-CoA hydratase/isomerase family" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_003806005.1" /db_xref="GI:302341476" /db_xref="GeneID:9492467" /translation="MAQTRSEIRPDGVAFLIMDQPGRPVNTLAAELLDDIDQRLGELA ADGRVLAIVLASAKASSFVAGADLKSLRQTKDPAQASAAVRQSGRVLDRLAALAKPVV AAVHGAVLGGGLGLALSCRRIVAAEGPGAAFGLPAVSLGFIPAGGITGRLVARVGLAA ALPLLLEGRRLGPAQALELGLIDAVARPEELWESAASLALALAQGRLAPRPRRDQGLD QGLIQAARRQVLARGQENNAAPLAVLEGLELAATHGPQAARHREDELFGQLVASRPAQ NLIWHFGALAAQQRLGPGPAARPIIRLGIVGAGPRAAQLAVAGLERWGLAVAAGDEAA AQELRQAVAQAVDKQAARGLVRNAQMHLGRLRAASDLAVLAGCDAVIVTRPSAPARLA QILAACAPGAVLLVCGPLPPADWPQAEAVVGFGLADDFARGPLVELCRGAAAPWALDT AVGLAKALGKAVAPSGPAEAPLVELLRAAQAAAPPADAALVLANLAARWLTAGWIAPA EVELLAVHCLGFAAWRGGPLHVADEMGLARVVARLEALAASHGETFAPAPPLRAMAAE GRAFFA" misc_feature complement(41332..41886) /locus_tag="Deba_0032" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(41491..41493,41500..41505,41575..41583, 41587..41589,41707..41721,41731..41733,41830..41832, 41836..41838)) /locus_tag="Deba_0032" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(41575..41577,41713..41715)) /locus_tag="Deba_0032" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(41362..41364,41371..41373,41404..41406, 41413..41418,41422..41427,41431..41436,41449..41454, 41458..41466,41470..41472,41488..41499,41539..41550, 41611..41613,41635..41637)) /locus_tag="Deba_0032" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" misc_feature complement(40198..>40371) /locus_tag="Deba_0032" /note="multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154" /db_xref="CDD:183002" gene 42058..42831 /locus_tag="Deba_0033" /db_xref="GeneID:9492468" CDS 42058..42831 /locus_tag="Deba_0033" /note="COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: mta:Moth_2304 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; SPTR: Q2RG48 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_003806006.1" /db_xref="GI:302341477" /db_xref="GeneID:9492468" /translation="MAMKSDQIDSIGPLEKTPTMSRRVAEYLARLIAGGSLRPGEKLP GETALAQRLGVSRPTLREALGVLRAKGLVEVRPRSGTYVTSALAGGGPSAVGELVAVD PTKIWELLEIRKVVDTAAAALAASRRTPADLIRLAELRQSVRNLGGHSLIRRGEGGKA YARFFAFIAQASHNTLFSHLLSWVSTTLRHLLPYSRDRLAGRPESGPVIMDQIQAIAQ AIEDGDPDRARRLTMEHLEYLEKALREVHALQPPVVIGG" misc_feature 42094..42810 /locus_tag="Deba_0033" /note="Transcriptional regulators [Transcription]; Region: FadR; COG2186" /db_xref="CDD:32369" misc_feature 42118..42309 /locus_tag="Deba_0033" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(42118..42120,42187..42189,42193..42198,42220..42234, 42238..42243,42250..42252,42280..42285,42289..42300) /locus_tag="Deba_0033" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 42379..42768 /locus_tag="Deba_0033" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene 43272..44720 /locus_tag="Deba_0034" /db_xref="GeneID:9492469" CDS 43272..44720 /locus_tag="Deba_0034" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR005467:IPR 009082:IPR004358; KEGG: dma:DMR_10790 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C4XL31 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_003806007.1" /db_xref="GI:302341478" /db_xref="GeneID:9492469" /translation="MGRPQTLSKIRVRLLLGFVTAFVFMVLFGAFSYVYFARIEQRLV FLSHADSMLNTVLEFRRYEKNYFLYHHEKDYQQALAYLGEFDGLLKSQAEHLSAGLGQ AGYRLLLANAGRYEEALGAAHRMLGGALAGGDSSGELAAAIDGLRSAGQQIIHGCEVL ARQERHEIQRLLRQYRPVMIAFLLCLAALGAVAAHGLIQRLVRPLKVIEDAAQDVGRG QFRVIAWNDRRDEIGDVIAAFNHMVRHLRQNNEQMIQTEKLTSLGTLTSGVAHELNNP LNNISTSTQILLEELDSPDLQEYHRELLAAIEQQVAKAKDIVGSLLEFARQREFEPSR HDLRAVIDETLKLIKGEIPAQVQVEVDAPAGIVMDMDKAHIVQALINLIINAIQAMDG AGRLSILARLAEGETVRLELTDSGSGIAPEVLPRIFDPFFTTKEVGRGTGLGLSITYG IIERHRGHIQAESRPGQGARFIITLPLRAGEA" misc_feature <43863..44015 /locus_tag="Deba_0034" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 44046..44249 /locus_tag="Deba_0034" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(44064..44066,44076..44078,44088..44090,44097..44099, 44109..44111,44118..44120,44178..44180,44190..44192, 44199..44201,44211..44213,44220..44222,44232..44234) /locus_tag="Deba_0034" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 44082..44084 /locus_tag="Deba_0034" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 44442..44696 /locus_tag="Deba_0034" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(44505..44507,44511..44513,44517..44519,44523..44528, 44595..44606,44652..44654,44658..44660,44673..44678, 44682..44684) /locus_tag="Deba_0034" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature order(44517..44519,44523..44525,44595..44597,44601..44603) /locus_tag="Deba_0034" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 44724..46079 /locus_tag="Deba_0035" /db_xref="GeneID:9492470" CDS 44724..46079 /locus_tag="Deba_0035" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR011006:IPR 009057:IPR003593:IPR020441; KEGG: tye:THEYE_A0743 response regulator HsfA; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: B9ZPP2 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806008.1" /db_xref="GI:302341479" /db_xref="GeneID:9492470" /translation="MPRKPRLLIVEDDPLARANLKHILQRGDEYQVDAADGGVMALEM LAAQNYDLVLTDLRMEKVDGMQVLAEAKKRGPDAEVIMLTAFASVDSAIEAMKNGAFH YIAKPYKLDEVRTQVAGALEKMRLREELRELKRDLRARDGMGFIVGKNPLIQKLVATV GQVAPTDANVLIIGETGTGKELLARALHYCSQRAERRFVAFNCAAFSEDLLVSELFGH QKGSFTGAVQTKAGLFEAADGGTVFLDEIGDMPLSMQSKLLRVIQEKALTRVGATEAI PVDVRIVAATNRDLKKMVDEGRFRSDLYYRLNVVCMEAPPLRRRRDDIPLLAHHFLHK HAERQNKRFDGLSPEMIGALCAHDFPGNIRELENIIERAVTLGVGQRLELWDLPEELR AKRPAAAVEGSLPTLEEKECEYIKLVLAQTGGNKTRAAEILGIDRVSLWRKIKKFGLE P" misc_feature 44724..46076 /locus_tag="Deba_0035" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 44745..45074 /locus_tag="Deba_0035" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(44754..44759,44889..44891,44913..44915,44973..44975, 45030..45032,45039..45044) /locus_tag="Deba_0035" /note="active site" /db_xref="CDD:29071" misc_feature 44889..44891 /locus_tag="Deba_0035" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(44898..44903,44907..44915) /locus_tag="Deba_0035" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 45039..45047 /locus_tag="Deba_0035" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 45216..45653 /locus_tag="Deba_0035" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 45243..45266 /locus_tag="Deba_0035" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(45246..45269,45456..45458,45582..45584) /locus_tag="Deba_0035" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 45444..45461 /locus_tag="Deba_0035" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 45639..45641 /locus_tag="Deba_0035" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 45939..46064 /locus_tag="Deba_0035" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene 46111..48267 /locus_tag="Deba_0036" /db_xref="GeneID:9492471" CDS 46111..48267 /locus_tag="Deba_0036" /note="COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547:IPR002645; KEGG: dde:Dde_3641 sulfate permease; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q30V62 Sulfate permease; PFAM: Sulfate transporter family; STAS domain; TIGRFAM: high affinity sulphate transporter 1" /codon_start=1 /transl_table=11 /product="sulphate transporter" /protein_id="YP_003806009.1" /db_xref="GI:302341480" /db_xref="GeneID:9492471" /translation="MLTRIFPFLAWFKDYNGAKARMDVMAGVTVALVLIPQSMAYAQL AGLPAYYGLYAAFLPPMIASLFGSSMQLATGPVAVVSLMTAASLEPLATAGSEAFIAY AILLTLIVGLFQFLLGVLRLGLVVNFLSHPVVNGFTNAAAIIIATSQLNKIFGVSVDK AEHHYETIMRVVEAAVNFTHWPSVIMGVGAFAIMYGLKKINPKLPYVLAAVAVATLVS WAIGFNHDAKVGLEAIASPAIRQQIVDYNQAMAQVAQLGGHRAGLNKAVMAQESAEGG ESLELIRLKQQASLDTAMIEAEKERAHQLRTALRRYLLAAVSGPDEAVVFYEQGQAPA GAPTDGRTWRIKLGEGALDEKAITMIGGGAVVGSIPPGLPAFGVPSVDMGSVLQLLPY AAIISLLGFMEAISIAKAMAAKTGQRLDPNQELIGQGLANMIGCLGKSYPVSGSFSRS AVNLQAGAVTGMSSVVTSLMVVVVLLFMTPLLYHLPQAVLAAVIMMAVVGLINVAGFV HAWKAQWYDGAISVITFIATLAFAPHLDKGIMIGVLLSLGMFLYKSMRPRVAALSMHE DCALRDAEHFGLRQCRHVAVVRFDGPLFFANASFLEDKINERIRQMPKLKHILVVANG INDMDASGEEALSLIVDRVRSAGYDISFSHVKENVLEAMRRTHLLAKIGEDHIYPLAA VAIASIHESAHRGSDEKDCPLVTVCPLDAMREVGGN" misc_feature 46129..>46725 /locus_tag="Deba_0036" /note="high affinity sulphate transporter 1; Region: sulP; TIGR00815" /db_xref="CDD:162054" misc_feature 46498..>46725 /locus_tag="Deba_0036" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" misc_feature <47194..47646 /locus_tag="Deba_0036" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" misc_feature 47833..48150 /locus_tag="Deba_0036" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042" /db_xref="CDD:132913" gene 48271..49491 /locus_tag="Deba_0037" /db_xref="GeneID:9492472" CDS 48271..49491 /locus_tag="Deba_0037" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dat:HRM2_40350 response regulator receiver domain protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C0QC76 Response regulator receiver domain protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806010.1" /db_xref="GI:302341481" /db_xref="GeneID:9492472" /translation="MSVVNIFYGSFCDAEQVALAVAGRLGYRLASDEDLIALAAGLGK QGAGALRRVMYGKANIFNSFSHEKERGLSLLKLAMSRMLAEDNLVFMGFGCHLTPKEV SHALRVCLAADTKFRVAKAVRELGLNEREAGARVHRDDEAAFRWLEYLQNRQPWDAAL YDMLIPMDKNSVDQAVELICRHAASPPLQPTAASRQAAADFALAAQVEMALAEEGHST RDLAVTVKGGRARVEVNKKVLMLGRLSDEVKRLVEGVDGVTAVEVEAGPGYHQADVYR RADFQLPSKVLLVDDEREFVQTLGERLLLREIGSAVVFDGEQALKVVAEDEPEVIVLD LKMPGIDGLEVLRRIKRDYPKVEVIILTGHGSERDRDNCLQIGAFAYLEKPVDIEQLS QTMQQAYDKIRSGQ" misc_feature 49126..49443 /locus_tag="Deba_0037" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 49129..49464 /locus_tag="Deba_0037" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(49138..49143,49270..49272,49294..49296,49354..49356, 49411..49413,49420..49425) /locus_tag="Deba_0037" /note="active site" /db_xref="CDD:29071" misc_feature 49270..49272 /locus_tag="Deba_0037" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(49279..49284,49288..49296) /locus_tag="Deba_0037" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 49420..49428 /locus_tag="Deba_0037" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 49496..51289 /locus_tag="Deba_0038" /db_xref="GeneID:9492473" CDS 49496..51289 /locus_tag="Deba_0038" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003661:IPR003594:IPR005467:IPR009082:IPR 004358; KEGG: dal:Dalk_2933 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: B8FKY8 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_003806011.1" /db_xref="GI:302341482" /db_xref="GeneID:9492473" /translation="MGLWRKIKPAFWDRRDSRLELLNYRRLWRTTFVSAVVVTLMPLV LLTAVNFYQFEQQYQLQRNEIASQTQRLLVKARVQAADFLDSRKAALTFVNMDNSAEQ LADQDRLAVIFSRLRQSFGGVVDLGLIDAQGVQQAYVGPYALRGRNYTDQEWYQVVLI RGVYISDVFLGHRNFPHFVIAVRHEQDGENPSVLRATIDTGRLNVLLRAIDQQSTGEV FLVNQDGVLQTPSLRFGGVLSRFPLRPTAARLAQVVEEFKDPSGKAALVGMAEIEGTP FAVVVVSQPKALLAKWDLLRINVIVMVLVSVMAILAVVWWGSTNLVSRIYEADLRRAQ MLHEVEYTNKLASIGRLAAGVAHEINNPVAIINEKVGLMKDLLAVSDDFAHRDKFLKQ AAVIQDSVKRVSDITHRLLGFARHLPVKYEQIHLEALLREVLGFLGREAQYRNVTIDM DIHDDLTAIEADKGQLQQVFLNIINNAMAAVADGGRIAIAAGLDDARHVAVTVSDDGV GIPPEDLKRIFEPFFSTKGERGTGLGLSITYGIVRKLGGRIEVSSAPGEGTTFKIVLP LKQDGDRAGTGQAGGPERAPAANTPTKGDNE" misc_feature 50204..51205 /locus_tag="Deba_0038" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature 50528..50740 /locus_tag="Deba_0038" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(50546..50548,50558..50560,50570..50572,50579..50581, 50591..50593,50600..50602,50669..50671,50681..50683, 50690..50692,50702..50704,50711..50713,50723..50725) /locus_tag="Deba_0038" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 50564..50566 /locus_tag="Deba_0038" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 50891..51190 /locus_tag="Deba_0038" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(50909..50911,50921..50923,51002..51004,51008..51010, 51014..51016,51020..51025,51089..51100,51146..51148, 51152..51154,51167..51172,51176..51178) /locus_tag="Deba_0038" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 50921..50923 /locus_tag="Deba_0038" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(51014..51016,51020..51022,51089..51091,51095..51097) /locus_tag="Deba_0038" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 51289..51648 /locus_tag="Deba_0039" /db_xref="GeneID:9492474" CDS 51289..51648 /locus_tag="Deba_0039" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: sfu:Sfum_0656 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: A0LG03 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806012.1" /db_xref="GI:302341483" /db_xref="GeneID:9492474" /translation="MRVLLIDDEKELVVTLSERLELRGIESDWATSGEDGLALVRQNK YDWVVVDLKMPGLGGLDAIKAIKAVQPAANVILLTGHSAAEDLRCALDMGACQYLVKP VDIDVLLSLMQKGVGRE" misc_feature 51295..51615 /locus_tag="Deba_0039" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 51298..51630 /locus_tag="Deba_0039" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(51307..51312,51439..51441,51463..51465,51523..51525, 51580..51582,51589..51594) /locus_tag="Deba_0039" /note="active site" /db_xref="CDD:29071" misc_feature 51439..51441 /locus_tag="Deba_0039" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(51448..51453,51457..51465) /locus_tag="Deba_0039" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 51589..51597 /locus_tag="Deba_0039" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 51654..52304 /locus_tag="Deba_0040" /db_xref="GeneID:9492475" CDS 51654..52304 /locus_tag="Deba_0040" /note="KEGG: dol:Dole_2332 histidine kinase A domain-containing protein; SPTR: A8ZV46 Histidine kinase A domain protein" /codon_start=1 /transl_table=11 /product="histidine kinase A domain-containing protein" /protein_id="YP_003806013.1" /db_xref="GI:302341484" /db_xref="GeneID:9492475" /translation="MAAEIKWQELMGGVLAFVGAVTASATHEIKNELAVINEQGSLVQ ELLQMAARGREVDPARLEELIGRVLIRVARADGVVKRLNAFAHSADLERQETDPAQSL ELIGKLFGRLAGLRGLTLELAPTPAGLVLPALPVLFEQVVWACLRGAADVAAKGSTLR LGLTIEGDAARLLVEGELAQPPALPSAPLLTALRAEARVVEGRALSLRLPLAGAEG" gene 52383..52814 /locus_tag="Deba_0041" /db_xref="GeneID:9492476" CDS 52383..52814 /locus_tag="Deba_0041" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2936 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FKZ1 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806014.1" /db_xref="GI:302341485" /db_xref="GeneID:9492476" /translation="MSEARILIVDDEKEFLDTVSERLSNRGFSVDAAQNGVEALGKID EVAYDAIVLDLMMPELDGLETLKRALQKKPDLQVILLSGQASLEKGVEAMKLGAMDFL EKPANLDVLAAKIKEGKSRRMVLVEKSREDAVSEILKRYSW" misc_feature 52398..52730 /locus_tag="Deba_0041" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 52401..52733 /locus_tag="Deba_0041" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(52410..52415,52542..52544,52566..52568,52626..52628, 52683..52685,52692..52697) /locus_tag="Deba_0041" /note="active site" /db_xref="CDD:29071" misc_feature 52542..52544 /locus_tag="Deba_0041" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(52551..52556,52560..52568) /locus_tag="Deba_0041" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 52692..52700 /locus_tag="Deba_0041" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(52862..53062) /locus_tag="Deba_0042" /db_xref="GeneID:9492477" CDS complement(52862..53062) /locus_tag="Deba_0042" /note="KEGG: similar to CG6619 CG6619-PA; SPTR: C1MP00 endonuclease/exonuclease/phosphatase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806015.1" /db_xref="GI:302341486" /db_xref="GeneID:9492477" /translation="MADCELLDKCGFFKKYGASHAPACQGLAAQYCRGPKKDQCKRKE YRKKHDAPPPDNMLPGGALLKE" gene complement(53176..54330) /locus_tag="Deba_0043" /db_xref="GeneID:9492478" CDS complement(53176..54330) /locus_tag="Deba_0043" /note="COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR001789:IPR011006; KEGG: dma:DMR_37700 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C4XMD6 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806016.1" /db_xref="GI:302341487" /db_xref="GeneID:9492478" /translation="MSPNKPPEKILFVDDEAAVLDSFKRQLRGKFDIDTALGPAAAQQ AIQNDGPYAVIVSDMKMPGMNGAQLLAWARGASPESVRMILTGFADMDSAVKAVNEGN VYRFLTKPCDAQTLIRALIDAIRQYRLEIAERQILEQTLQGAIKVLTDMLALVKPEAF GRASRISRHVRDIAAEMALEQPWQYETAAMLSQIGCLALPDDLLHKVYKGKPLSRMES EEFRGHPAMAVELLDNIPRLEPVSQAILYQEKQFDGYGPPEGGLAGHAIPLGGRILKV VLDFDSLSAGGLNKASGLAELKKRHGWYDPDMILALEVTLGMEANYNLRRVGVADLEE NMILAQDVCAGSRVLLAQGQQLSRTLIVSLRNYHRAQRLAEPVEVLVPIR" misc_feature complement(53395..54312) /locus_tag="Deba_0043" /note="Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]; Region: COG3437" /db_xref="CDD:33243" misc_feature complement(53959..54300) /locus_tag="Deba_0043" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(54001..54006,54013..54015,54073..54075, 54133..54135,54157..54159,54286..54291)) /locus_tag="Deba_0043" /note="active site" /db_xref="CDD:29071" misc_feature complement(54157..54159) /locus_tag="Deba_0043" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(54133..54141,54145..54150)) /locus_tag="Deba_0043" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(53998..54006) /locus_tag="Deba_0043" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(54317..55537) /locus_tag="Deba_0044" /db_xref="GeneID:9492479" CDS complement(54317..55537) /locus_tag="Deba_0044" /note="COGs: COG1639 signal transduction protein; InterPro IPR001789:IPR013976:IPR011006:IPR014626; KEGG: dma:DMR_37710 response regulator receiver protein; PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; SMART: response regulator receiver; SPTR: C4XMD7 Response regulator receiver protein; PFAM: Response regulator receiver domain; HDOD domain" /codon_start=1 /transl_table=11 /product="signal transduction protein" /protein_id="YP_003806017.1" /db_xref="GI:302341488" /db_xref="GeneID:9492479" /translation="MKRILFVDDEPQILDGLRRMLRGKRREWEMVFVGGGAEALAEIK KRPFDLVVTDMRMPVMDGAELLERVREMCPQTVRIVLSGHSEREKIMRSVRPAHQYLA KPIEQQELMAVLQKAIDLQQVLGNQALWAILGQAENLPAMPAIYSRLVEAIESEDSSM EAIGRIIEQDLGMTATVLKVVNSAFFGLPRTISSACQAVGLLGLDLIRSLVLSYQLFS TFEGRGPAKFSLPGLWRHSSVTAVLAKKIAQMEGGDRTMVDEAFMAGVLHDVGKLPLY YYAKETYAKVLEDVRAGEGLLFEVEGRVMGATHAEAGAFLMGLWGMSERVVRAIAFHH RPGDWPHGDFGPLTAVHAANVLEHELYVIHKHYRVPALDVAHLETVGKAGRVDAWRKE CKNLLGDGANFEPE" misc_feature complement(55193..55528) /locus_tag="Deba_0044" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(55184..55525) /locus_tag="Deba_0044" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(55226..55231,55238..55240,55292..55294, 55352..55354,55376..55378,55511..55516)) /locus_tag="Deba_0044" /note="active site" /db_xref="CDD:29071" misc_feature complement(55376..55378) /locus_tag="Deba_0044" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(55352..55360,55364..55369)) /locus_tag="Deba_0044" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(55223..55231) /locus_tag="Deba_0044" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(54530..55123) /locus_tag="Deba_0044" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(55545..57341) /locus_tag="Deba_0045" /db_xref="GeneID:9492480" CDS complement(55545..57341) /locus_tag="Deba_0045" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013656:IPR013767:IPR003594:IPR005467:IPR 000014:IPR000700:IPR001610:IPR004358; KEGG: dma:DMR_38800 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C4XN68 Sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor signal transduction histidine kinase" /protein_id="YP_003806018.1" /db_xref="GI:302341489" /db_xref="GeneID:9492480" /translation="MLHGCDKSFETCPHTRLIKDGQQHSQEFFDPVLGVDMLVTTSPL WRPDGKLMGSVHVARDISQLKNAEKAVQEQLRFLQMLVDTIPHPIFFKDKDGLFTGCN RAFELLMGLSRQDVLGRTARQALPEGVLDLGESNERQAMAKGSTISYETRLANAAGEK RDVIFNVVAYKDAEGQPAGLVGSILDITEQRAAARELRQSEERYRTLIETLSEGLVVV DENLNIKLFNPRFIELVGYPADVVKKANFTDFLDDENKAVVGAQYEKRKKGGRDSYEL AFTRQDGGKVYTLISPKPIFDASGVFKGSYALVTDLTERKILESQLMQAQKLEAIGQL AAGIAHEINTPAQFVSSNTRFLEESFADLTRLCQAYSALGQAALAADGELAALARAAQ ELAQEIDHDYLIEEIPKAIGSSLEGLGRVAKIVQSMKEFAHPGRDDFSPVDINKAIEN TVTVARNEWKYVSDLETDLDPDLPHVPGLVAELNQVFLNIIVNAAQALAGVIREGVDE KGLIRISTRATATGVEVRICDSGPGIPEHVGRKIFDPFFTTKEPGKGTGQGLSIAYRV VAERHKGALNYENRPEGGACFVINLPLVREED" misc_feature complement(<57075..>57242) /locus_tag="Deba_0045" /note="sensory histidine kinase AtoS; Provisional; Region: PRK11360" /db_xref="CDD:183098" misc_feature complement(56781..57089) /locus_tag="Deba_0045" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(56385..57080) /locus_tag="Deba_0045" /note="FOG: PAS/PAC domain [Signal transduction mechanisms]; Region: AtoS; COG2202" /db_xref="CDD:32384" misc_feature complement(order(56868..56870,56883..56885,56961..56972, 57009..57011,57027..57029,57039..57041)) /locus_tag="Deba_0045" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(56841..56843,56847..56849,56931..56936, 56943..56945,56967..56969,56979..56981)) /locus_tag="Deba_0045" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(56406..56711) /locus_tag="Deba_0045" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(56493..56495,56508..56510,56583..56594, 56631..56633,56649..56651,56661..56663)) /locus_tag="Deba_0045" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(56466..56468,56472..56474,56553..56558, 56565..56567,56589..56591,56601..56603)) /locus_tag="Deba_0045" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(55560..>56411) /locus_tag="Deba_0045" /note="Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]; Region: COG4191" /db_xref="CDD:33926" misc_feature complement(55569..55895) /locus_tag="Deba_0045" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(55581..55583,55587..55592,55605..55607, 55611..55613,55662..55673,55740..55745,55749..55751, 55755..55757,55761..55763,55833..55835,55863..55865, 55875..55877)) /locus_tag="Deba_0045" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(55863..55865) /locus_tag="Deba_0045" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(55665..55667,55671..55673,55743..55745, 55749..55751)) /locus_tag="Deba_0045" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(57290..58696) /locus_tag="Deba_0046" /db_xref="GeneID:9492481" CDS complement(57290..58696) /locus_tag="Deba_0046" /note="COGs: COG2202 FOG: PAS/PAC domain; InterProIPR001789:IPR013656:IPR013767:IPR000014:IPR 000700:IPR011006; KEGG: mac:MA1267 sensory transduction histidine kinase; PFAM: response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: response regulator receiver; PAS domain containing protein; SPTR: B3U4S0 Response regulator receiver; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor protein" /protein_id="YP_003806019.1" /db_xref="GI:302341490" /db_xref="GeneID:9492481" /translation="MQESLKVLLIEDEADFAGVVRKLLENNRHFAFKVDWAQSLAHGL TMMDGGRYQVVLLDLNLPDSRGLETLRILLRAAPEMPVVVLTGIDDADVAMRSLELGA QDFLDKGEISGKLLPRSLRFAVAHKNSWLLAQSAKQEKETILDSLVEHVVFTDNQSRV LWANRAACEAVGKTREEVEGRLCYEIWADRGDVCPDCPLGLAMATGQPQAIERTSRSG KFWQIKGAPVRDPGGAIVGGVEMALDVTARKKAEEALAASEKRYRHLVENAADIIYRT DIDNIVTFVNKAAEDITGYGADELVGMKTDDLVAPEHRKQVYEHYRRQFELGQYKVYL EFPIVAKDGRTVWLGQNLWSVEENGKLAGFEAIARDITELRDAREALQAAYEGMEDRI AERTAQLEMAKRQWEDTFNAVPDAIAIIDRGHKVLRANKAMARLAGLQPHDIVGKESA WRCCTAATKASRPARTPA" misc_feature complement(58310..58696) /locus_tag="Deba_0046" /note="FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784" /db_xref="CDD:31127" misc_feature complement(58373..58675) /locus_tag="Deba_0046" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(58373..58375,58382..58384,58439..58441, 58499..58501,58523..58525,58661..58666)) /locus_tag="Deba_0046" /note="active site" /db_xref="CDD:29071" misc_feature complement(58523..58525) /locus_tag="Deba_0046" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(58499..58507,58511..58516)) /locus_tag="Deba_0046" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(<58136..58276) /locus_tag="Deba_0046" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(57959..58267) /locus_tag="Deba_0046" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(57554..57916) /locus_tag="Deba_0046" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(57584..57892) /locus_tag="Deba_0046" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(57668..57670,57683..57685,57764..57775, 57812..57814,57830..57832,57842..57844)) /locus_tag="Deba_0046" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(57644..57646,57650..57652,57734..57739, 57746..57748,57770..57772,57782..57784)) /locus_tag="Deba_0046" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(<57356..57487) /locus_tag="Deba_0046" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" gene 58873..59625 /locus_tag="Deba_0047" /db_xref="GeneID:9492482" CDS 58873..59625 /locus_tag="Deba_0047" /note="COGs: COG3359 exonuclease; InterPro IPR012337; KEGG: dal:Dalk_5288 hypothetical protein; SPTR: B8FEH6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806020.1" /db_xref="GI:302341491" /db_xref="GeneID:9492482" /translation="MLKRTFLHISGVGPKRERAIWRAGVESWEDFLDRGQRLLPAGLH NLGRPVVERSLEALQRPDAAKTLAAMLPPAEHWRLWPHFDRVVYLDIETGGDPDQWGG VTVVGLYDGQTVRQFVAGQNIHQLDHAMHGADIVVTFAGASFDIPVLRAVFHNLWLPP AHIDLRWTLKRVGLTGGLKRIEKQLGLTRPPGVDGLGGLDAVHLWARHQAGDPSALPT LLAYNACDIVNLQPLLALAHDRLRQTLLAQAG" misc_feature 58873..59616 /locus_tag="Deba_0047" /note="Predicted exonuclease [DNA replication, recombination, and repair]; Region: COG3359" /db_xref="CDD:33167" misc_feature <59107..59559 /locus_tag="Deba_0047" /note="DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; Region: DnaQ_like_exo; cl10012" /db_xref="CDD:195944" misc_feature order(59287..59292,59299..59307,59548..59550) /locus_tag="Deba_0047" /note="active site" /db_xref="CDD:176647" misc_feature order(59287..59292,59299..59304,59548..59550) /locus_tag="Deba_0047" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176647" misc_feature order(59305..59307,59548..59550) /locus_tag="Deba_0047" /note="catalytic site [active]" /db_xref="CDD:176647" gene 59681..60082 /locus_tag="Deba_0048" /db_xref="GeneID:9492483" CDS 59681..60082 /locus_tag="Deba_0048" /note="KEGG: dba:Dbac_2125 peptidase M48 Ste24p; SPTR: C7LNY5 peptidase M48 Ste24p" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806021.1" /db_xref="GI:302341492" /db_xref="GeneID:9492483" /translation="MTQDHHQPRPDDQRPDETADCRIIRVIMQGEDPNAKARDALTRH LGMSLGASMVVLGAYYSYAWRVKWAWWVIGAIWALVLLHGATYLLRRRKAGPPQDGWR IEMEDDDPAPPEAAPVDRPKHKITVIEPKGR" misc_feature <59810..59983 /locus_tag="Deba_0048" /note="Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily...; Region: Heme_Cu_Oxidase_I; cl00275" /db_xref="CDD:193743" gene 60117..60782 /locus_tag="Deba_0049" /db_xref="GeneID:9492484" CDS 60117..60782 /locus_tag="Deba_0049" /EC_number="2.1.1.77" /note="COGs: COG2518 Protein-L-isoaspartate carboxylmethyltransferase; InterPro IPR000682; KEGG: sat:SYN_01000 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: Q2LUT4 Protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase" /codon_start=1 /transl_table=11 /product="protein-L-isoaspartate O-methyltransferase" /protein_id="YP_003806022.1" /db_xref="GI:302341493" /db_xref="GeneID:9492484" /translation="MAQLNDFPVQRRRMVEEQIARRGVGDPKLLAAMGEIPRHLFVPE ALWGQAYADHPVAIGEGQTISQPFIVAIMTDALGLTGREKVLEIGTGSGYQTAILARL ADWVYSVERILALSRRAQATLEKIKAFNVNLVVGDGTLGLPAHAPYDAILVTAGGPKL PQTLIDQLADGGRLVMPVGDRLHQTLTRLTKRGPRLVTEDLGGCRFVDLVGKHGWITH GRD" misc_feature 60171..>60758 /locus_tag="Deba_0049" /note="protein-L-isoaspartate O-methyltransferase; Provisional; Region: PRK13943" /db_xref="CDD:172452" misc_feature 60366..60650 /locus_tag="Deba_0049" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(60378..60398,60444..60446,60522..60530,60576..60578) /locus_tag="Deba_0049" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 60769..61230 /locus_tag="Deba_0050" /db_xref="GeneID:9492485" CDS 60769..61230 /locus_tag="Deba_0050" /note="COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005268; KEGG: rxy:Rxyl_0512 hypothetical protein; SPTR: Q1AYP2 Putative uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806023.1" /db_xref="GI:302341494" /db_xref="GeneID:9492485" /translation="MAAIRLVSVVGAGAASPRQYEQARQVGQLLAKHGLGVVCGGLGG VMEAACRGASEAGGLAVAILPGTDRHTANRYATVVIPSGLGQARNALVVSAGEGVIAI AGGPGTLSEIGFALKAGKPIVALDSWDIPGLAEAESPQEAVDCLIDRLGPA" misc_feature 60778..>61143 /locus_tag="Deba_0050" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene complement(61411..61581) /locus_tag="Deba_0051" /db_xref="GeneID:9492486" CDS complement(61411..61581) /locus_tag="Deba_0051" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806024.1" /db_xref="GI:302341495" /db_xref="GeneID:9492486" /translation="MELAYLVVSVAGMLVAVSVSIHQEKKRDRELDQCLSELACLTNP SGPPDEEGHAIH" gene 61797..62696 /locus_tag="Deba_0052" /db_xref="GeneID:9492487" CDS 61797..62696 /locus_tag="Deba_0052" /note="COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035:IPR020855:IPR005925; KEGG: mgm:Mmc1_3564 agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: C8R0F8 Agmatinase; TIGRFAM: agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase" /codon_start=1 /transl_table=11 /product="agmatinase" /protein_id="YP_003806025.1" /db_xref="GI:302341496" /db_xref="GeneID:9492487" /translation="MSLDGPITSFSELPNPPEEAARAAIIPAPLEATVSYGHGTSLGP AAIIFASQQLELYDNVVDCQVMDLGVITRPAVNVSPPLETALTRIEAAVGRELDAGRL PVLLGGEHTVTVAALRALVKRRGADFTVLSLDAHLDLRDSYEGSPYSHACAMRRALDL GLEVRHFGARSCSLAEMELIRARGMEPLWAREVHNDPDWLQKAVAGLEGPVYLTLDVD GFDASVMPATGTPEPGGLSWPQVTAWLEAVCARCPVIGLDVVELAPLMGMTAWDFTAA KLVHRALGLALLGGPKPSHGSER" misc_feature 61893..62636 /locus_tag="Deba_0052" /note="Arginase family; Region: Arginase; cl00306" /db_xref="CDD:193759" gene 62693..63346 /locus_tag="Deba_0053" /db_xref="GeneID:9492488" CDS 62693..63346 /locus_tag="Deba_0053" /note="InterPro IPR013655:IPR000014:IPR000700:IPR001610; KEGG: dal:Dalk_0127 PAS/PAC sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAC repeat-containing protein; SPTR: B8FKM2 Putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor protein" /protein_id="YP_003806026.1" /db_xref="GI:302341497" /db_xref="GeneID:9492488" /translation="MSAPLGPIDQTQNDARLRLLAETTGDALYQLRFSTMAYDYLSPG IESLTGYGAREIMAMSFASLVLEATHADGRPADLEMLRHKRLSGQVGPIELDYRVRCK DGREKWLSDHSFPYHDEDGRLIGSVGVLRDITRRKTAELAQRRLVEDLRQALDQVRTL SGLLPICAKCKKIRDDKGYWQQIEHYLASHSGASFSHGLCPDCVRELYPELKGENIK" misc_feature 62729..63118 /locus_tag="Deba_0053" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 62810..63091 /locus_tag="Deba_0053" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(62813..62815,62825..62827,62843..62845,62882..62887, 62900..62905,62987..62989,63002..63004) /locus_tag="Deba_0053" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(62873..62875,62885..62887,62921..62923,62930..62935, 63023..63025,63029..63031) /locus_tag="Deba_0053" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" gene complement(63403..63822) /locus_tag="Deba_0054" /db_xref="GeneID:9492489" CDS complement(63403..63822) /locus_tag="Deba_0054" /note="COGs: COG4273 conserved hypothetical protein; InterPro IPR014958; KEGG: sfu:Sfum_3599 hypothetical protein; PFAM: DGC domain protein; SPTR: A0LPB7 Putative uncharacterized protein; manually curated; PFAM: DGC domain" /codon_start=1 /transl_table=11 /product="DGC domain protein" /protein_id="YP_003806027.1" /db_xref="GI:302341498" /db_xref="GeneID:9492489" /translation="MSENCCANTGQALILACSGGSNVGQLTNQAAVELTKEGFGKMFC LAGVGGNLPGFVRAVAEAPALLVLDGCEVGCAKAILAQAGAPLRGHLVLTELGVVKNK DLTPPAEQLAQVKEAAKKAAWSAGPSLTTIGGCACGK" misc_feature complement(63460..63786) /locus_tag="Deba_0054" /note="DGC domain; Region: DGC; cl01742" /db_xref="CDD:154564" gene complement(64015..64962) /locus_tag="Deba_0055" /db_xref="GeneID:9492490" CDS complement(64015..64962) /locus_tag="Deba_0055" /note="InterPro IPR006016:IPR006015:IPR014729; KEGG: dol:Dole_1330 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZYM9 UspA domain protein; PFAM: Universal stress protein family" /codon_start=1 /transl_table=11 /product="UspA domain protein" /protein_id="YP_003806028.1" /db_xref="GI:302341499" /db_xref="GeneID:9492490" /translation="MAEGGIKALVAVDGSWRAMSMVHFIAGQMEPRKVELKLFNVHDQ LPEGFRDIDKNLDYLFRLSEVKSWDLSQRAHMANFMNQARLILERAGFDAKGIDSQIH ERVRGVARDIIAEASRGYDMVAFARRGLGALQGTILGSVANKLVTKLTDIPLWVVGRR AKPGRVLLAVDGSESATRAAAHLARVASDNAAVTVFHAVRSPRLIMEYPLVIDELPPE IVHISDGQTVGQRAQRVMEEAAEALVASGFKRERIELKLAQDVSSRADAIVSAAKAGS YGLILMGRRGMSSVGEFSMGRVTAKVLQLAKGMAVAVVN" misc_feature complement(64492..64944) /locus_tag="Deba_0055" /note="Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide; Region: AANH_like; cl00292" /db_xref="CDD:193753" misc_feature complement(64042..64470) /locus_tag="Deba_0055" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(64066..64077,64105..64110,64114..64119, 64369..64371,64450..64458)) /locus_tag="Deba_0055" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(64965..65402) /locus_tag="Deba_0056" /db_xref="GeneID:9492491" CDS complement(64965..65402) /locus_tag="Deba_0056" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dol:Dole_1361 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: A8ZYR0 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806029.1" /db_xref="GI:302341500" /db_xref="GeneID:9492491" /translation="MKIPIYILIVDDEPDFVDMLAMRLGDEGNKVRTALDGKSGLALL DEWDADVVILDIKMPGMDGMQVLKEIKQKHPIVEVILLTGHGTIDTAVEGLKSGAYDY LLKPANHQELLDKLEQARKRKAEHEERIRQAEALALVRRTGGM" misc_feature complement(65052..65384) /locus_tag="Deba_0056" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(65046..65381) /locus_tag="Deba_0056" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(65085..65090,65097..65099,65154..65156, 65214..65216,65238..65240,65367..65372)) /locus_tag="Deba_0056" /note="active site" /db_xref="CDD:29071" misc_feature complement(65238..65240) /locus_tag="Deba_0056" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(65214..65222,65226..65231)) /locus_tag="Deba_0056" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(65082..65090) /locus_tag="Deba_0056" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(65415..66602) /locus_tag="Deba_0057" /db_xref="GeneID:9492492" CDS complement(65415..66602) /locus_tag="Deba_0057" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR001789:IPR003661:IPR003594:IPR005467:IPR 011006:IPR009082:IPR004358; KEGG: dal:Dalk_2254 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SPTR: B8FIF7 Sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="response regulator receiver sensor signal transduction histidine kinase" /protein_id="YP_003806030.1" /db_xref="GI:302341501" /db_xref="GeneID:9492492" /translation="MALEKSQITVLLVDDEADFRGPLARRLAKRGIDSVEAGSGQAAL ELFADRQFDAVILDVKMPGLDGLQTMAAIKKRQPDLEVILLTGQASAADGVAGIKAGA FDYLTKPVEIEQLAGKIRQAVERREMRQEQELEAQFRQEMQRRMNVAERLASLGTMAS GVAHEINNPLAIISEAAGWLKGRLAKDQSASDELRKAGELAISKILSSVERASRITHQ LLDFARKNDWEIQEFDIVELASDVIDLTANAARDANCKVELHAKSRPIKVWSDPYQLR QVLINLLTNACQAVGTQGGGEAWLSVDSAGDDVLIAVKDTGPGIPKENLTRVFEPFFS TKPPGKGTGLGLSVSKGIVEKLGGRIEVDSRLGSGAVFRVSLPRKPQVSPVRPEHGPS LNH" misc_feature complement(66258..66575) /locus_tag="Deba_0057" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(66246..66572) /locus_tag="Deba_0057" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(66276..66281,66288..66290,66345..66347, 66405..66407,66429..66431,66558..66563)) /locus_tag="Deba_0057" /note="active site" /db_xref="CDD:29071" misc_feature complement(66429..66431) /locus_tag="Deba_0057" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(66405..66413,66417..66422)) /locus_tag="Deba_0057" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(66273..66281) /locus_tag="Deba_0057" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(65931..66149) /locus_tag="Deba_0057" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(65946..65948,65958..65960,65967..65969, 65979..65981,65988..65990,66000..66002,66075..66077, 66084..66086,66096..66098,66105..66107,66117..66119, 66129..66131)) /locus_tag="Deba_0057" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(66111..66113) /locus_tag="Deba_0057" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(65475..65780) /locus_tag="Deba_0057" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(65487..65489,65493..65498,65511..65513, 65517..65519,65565..65576,65643..65648,65652..65654, 65658..65660,65664..65666,65739..65741,65748..65750, 65760..65762)) /locus_tag="Deba_0057" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(65748..65750) /locus_tag="Deba_0057" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(65568..65570,65574..65576,65646..65648, 65652..65654)) /locus_tag="Deba_0057" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(66625..68202) /locus_tag="Deba_0058" /db_xref="GeneID:9492493" CDS complement(66625..68202) /locus_tag="Deba_0058" /note="COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: dol:Dole_1359 anion transporter; PFAM: sodium/sulphate symporter; SPTR: A8ZYQ8 Anion transporter; TIGRFAM: anion transporter; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter" /codon_start=1 /transl_table=11 /product="anion transporter" /protein_id="YP_003806031.1" /db_xref="GI:302341502" /db_xref="GeneID:9492493" /translation="MIPKSKLLMLLVAIALGIVVMLLPRPEGTRFEIIGDPDQKVLAA VSDAFALYGAPDKEGAYLVEAKAPGTEQCTGQAIEAKIQQLGLADVSVEYDNGLSPRA KTFLAVLAFLVVLFVAEPVPLEITAMCIGVLLIATGVSDVKDAWAAYMNPVVVFIMCC LIFAIALDKANVTKRLAHAVAKKAGDSVTKFTFILAISLGLASAVMHDAAAAAIGFAT ILPLMRAAGVEPNTNTARFMMMSIPFACSAGGMGTLVGGGRCMVSAAFLKELTGMELD FLDWMLYAGPGALICVPAVVAVVYLVFRPDPKIKLPKYDEEIGPWTRNEIVTLSIFGL VLLSWLLKGFTGLDYSVTGILGVVALVLTGVLKWHDIHTDLEWGTALFIFGGGLALGL AMDSSGAARYFANLFFPLVKGGGWLVLLAAVGVFGALVTNAMANVAAAALILPIVIPM AKMEGVDPRVLALGLGMCTSFAYLLVIGCPPNAISYSFKQFRAMDLTKAGLVATPIML ALVLGVAALWWHIMGLV" misc_feature complement(<67330..67830) /locus_tag="Deba_0058" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" misc_feature complement(66682..>66840) /locus_tag="Deba_0058" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(68186..68593) /locus_tag="Deba_0059" /db_xref="GeneID:9492494" CDS complement(68186..68593) /locus_tag="Deba_0059" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2251 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FIF4 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806032.1" /db_xref="GI:302341503" /db_xref="GeneID:9492494" /translation="MGADRCTLRLLLVDDEHGYLEVLSKRLGKRGVEVTTASSGEAAI RLLRRNEFDAAVVDLKMEDMDGIEVLKVFKKMDPDMAVIILTGHGSEQAARDGMRQGA HDYLTKPCELSELLDKIQQACKWSERSDNDTEK" misc_feature complement(68234..68566) /locus_tag="Deba_0059" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(68228..68563) /locus_tag="Deba_0059" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(68267..68272,68279..68281,68336..68338, 68396..68398,68420..68422,68549..68554)) /locus_tag="Deba_0059" /note="active site" /db_xref="CDD:29071" misc_feature complement(68420..68422) /locus_tag="Deba_0059" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(68396..68404,68408..68413)) /locus_tag="Deba_0059" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(68264..68272) /locus_tag="Deba_0059" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(68609..69001) /locus_tag="Deba_0060" /db_xref="GeneID:9492495" CDS complement(68609..69001) /locus_tag="Deba_0060" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2250 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FIF3 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806033.1" /db_xref="GI:302341504" /db_xref="GeneID:9492495" /translation="MSRTNVLLVDDEAPFVAALAKRLTKRGLHVTTASSGDEALDFLE QIDADVIVLDIRMPGLDGLETLAEVKRRLPAVEVIMLTGHGGSDDVVEGMSLGAFDFL VKPCDVELLRQLVEEAAAKKRASIGARG" misc_feature complement(68654..68986) /locus_tag="Deba_0060" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(68645..68983) /locus_tag="Deba_0060" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(68687..68692,68699..68701,68756..68758, 68816..68818,68840..68842,68969..68974)) /locus_tag="Deba_0060" /note="active site" /db_xref="CDD:29071" misc_feature complement(68840..68842) /locus_tag="Deba_0060" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(68816..68824,68828..68833)) /locus_tag="Deba_0060" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(68684..68692) /locus_tag="Deba_0060" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(68998..70704) /locus_tag="Deba_0061" /db_xref="GeneID:9492496" CDS complement(68998..70704) /locus_tag="Deba_0061" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003661:IPR003594:IPR005467:IPR009082:IPR 004358; KEGG: dal:Dalk_2249 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: B8FIF2 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_003806034.1" /db_xref="GI:302341505" /db_xref="GeneID:9492496" /translation="MGGERNGKHKNFYRQLRRNIILAIMLVSLVPLLLSQGIVLAHLR EAYREKVIAHLHELILKHGQGIDRYLTDRLANIRLLARAYDPAILADEEFLRRQLGLL REEFGGVFVDLGLVDGEGKQLAYAGPLNLTGVDYSQAGWFKLAMAHDQFISDVFTGLR GTPHFVVAVKQDRHGQDWILRATIDIEAFSFLVENIRQGETGFAFIVNRKGELQTRPR FAVDVARQPYAEFLRAKTLPGKVVVTEKRGQDGHDYIMAVSLLKGGQWLLFYQQERSD ALSSLAGAERLAMAVVAAGVLAVLFMALAVSGRMVARIAKSDEQKKLMDERMLEAGRL AAVGELAAGIAHEINNPVAIMVEEAGWLEDLLEEDDVVSNADRAEFERALAQIKTQGA RCKGITHKLLSFARKTDPEAREISVNEMIQEALSLLAQKSRYANVKIQARLQPGLPSV KASPSELQQVLVNLVNNAVDAIGAAGGAVTVSSERVGDKIVLKVADTGKGIPEAELSR IFDPFFTTKPVGQGTGLGLSICYGIIHKLGGQISVESQLGQGTTFVITLPAASGAAED HK" misc_feature complement(69487..69705) /locus_tag="Deba_0061" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(69502..69504,69514..69516,69523..69525, 69535..69537,69544..69546,69556..69558,69622..69624, 69640..69642,69652..69654,69661..69663,69673..69675, 69685..69687)) /locus_tag="Deba_0061" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(69667..69669) /locus_tag="Deba_0061" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(69034..>69261) /locus_tag="Deba_0061" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(69046..69048,69052..69057,69070..69072, 69076..69078,69124..69135,69202..69207,69211..69213, 69217..69219,69223..69225)) /locus_tag="Deba_0061" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(69127..69129,69133..69135,69205..69207, 69211..69213)) /locus_tag="Deba_0061" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(70712..71101) /locus_tag="Deba_0062" /db_xref="GeneID:9492497" CDS complement(70712..71101) /locus_tag="Deba_0062" /note="InterPro IPR011006; KEGG: gau:GAU_2230 NarL family two-component response regulator; SPTR: C1A9U5 NarL family two-component response regulator" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806035.1" /db_xref="GI:302341506" /db_xref="GeneID:9492497" /translation="MNSDHEIRVMLLDRGQYVGQWLGRLLGRTPGFSYLGHCDGGRCL ESRALRTRPDVVLMDLQTARALPGGAMGRLRQSLPGAMFVLMDLDDGGNYERLARRLG ADGFISSANMPQALEKIRRRLLYQRRV" misc_feature complement(<70730..71083) /locus_tag="Deba_0062" /note="Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197" /db_xref="CDD:32379" misc_feature complement(<70733..>70816) /locus_tag="Deba_0062" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" gene 71431..73476 /locus_tag="Deba_0063" /db_xref="GeneID:9492498" CDS 71431..73476 /locus_tag="Deba_0063" /note="COGs: COG4564 Signal transduction histidine kinase; InterProIPR013656:IPR011712:IPR003594:IPR005467:IPR 000014:IPR000700; KEGG: reh:H16_A0780 signal transduction histidine kinase; PFAM: PAS fold-4 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: PAS domain containing protein; ATP-binding region ATPase domain protein; SPTR: Q0KDJ4 Signal transduction histidine kinase containing PAS/PAC sensor domain; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_003806036.1" /db_xref="GI:302341507" /db_xref="GeneID:9492498" /translation="MAAAQFKRFLIKRRPAVLLFGAFSLLVLMGLVYSLVVYQALRER AEGENLAADLAQAENCGYFIGDHQKGVLGRLAVIAARNAFRQAIVQRDLAELYSFLGP LWQDTQETDAVFVAGPAGDFLVGLPRQQNPPLEPPGLTPGAVRPTISPAHESHVEQGR LVVTLSAPVLTPDGAPVGYLAIVQRADLWQGVIERLSVRPGRSIFVFDQKQRLIFSNL TGRPAQSPQGRLALDQARKMLAGGGRALAALEQSPDDGKRYFAAAAPVAGLGWSVALA QDYDAAMAPAHAMFMNIVFFMGLLLLCLLFLSFLVMSRYRMQQRMLTELDEEARRLEG LVQQRTADLRHTTERYRNLVQDLPDVVYELDAVGRVTFVSKAVSAVLGYEPGDMLGIL WRDFVSGEDRAHFDEERRRAHSGEKISIMALRHLTKNGSLRWLSIHSRALLDHDGNPT GRLGVARDVTSEVMAERKIRELSGRLINAQEEERKRIALDLHDEMGQILSALKIGLQS LAQREENQREDINQLIALAQRVMDQTRALAYHLRPAILDNFGLVAALEDLCESMSESK LLAVEYNLQPIDEDLLPPGVRTSLFRFAQEALTNAVKHSGSLRVEVSLAADEGAIELC VRDWGKGFNVAQALDAGKHLGLAGMRERISLIGGRLLIDSNFKGSTLKVRAPIGGRR" misc_feature 72472..72837 /locus_tag="Deba_0063" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 72499..72807 /locus_tag="Deba_0063" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(72547..72549,72559..72561,72577..72579,72616..72627, 72703..72705,72718..72720) /locus_tag="Deba_0063" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(72607..72609,72619..72621,72643..72645,72652..72657, 72739..72741,72745..72747) /locus_tag="Deba_0063" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 72796..73473 /locus_tag="Deba_0063" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG3920" /db_xref="CDD:33706" misc_feature 72877..73068 /locus_tag="Deba_0063" /note="Histidine kinase; Region: HisKA_3; pfam07730" /db_xref="CDD:191831" misc_feature 73198..73452 /locus_tag="Deba_0063" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(73216..73218,73228..73230,73237..73239,73303..73305, 73309..73311,73315..73317,73321..73326,73357..73368, 73414..73416,73420..73422,73432..73437,73441..73443) /locus_tag="Deba_0063" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 73228..73230 /locus_tag="Deba_0063" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(73315..73317,73321..73323,73357..73359,73363..73365) /locus_tag="Deba_0063" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 73473..74150 /locus_tag="Deba_0064" /db_xref="GeneID:9492499" CDS 73473..74150 /locus_tag="Deba_0064" /note="COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR001789:IPR000792:IPR011006:IPR016032:IPR 011991; KEGG: gsu:GSU3229 LuxR family DNA-binding response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Q747N6 DNA-binding response regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family" /codon_start=1 /transl_table=11 /product="LuxR family transcriptional regulator" /protein_id="YP_003806037.1" /db_xref="GI:302341508" /db_xref="GeneID:9492499" /translation="MKDKARVVICDDHAIFREGLKTVLAQSPDFTIIGEAANGFEAVE TVLRLRPELVTMDIAMPEQSGIEAAKQIAAELPETRVIILSVHSRKTFILEALKAGAR GYVLKDSAGEKLVDAAKAVLRGECYLDSPVAGHIVDEFVKMPDMTPAPAQDSQERLTD RERQLLRLVVEGLPNREIADKLCLSQKTVENHRANIMRKLGRHDVIGLVKYAIATGLV DPDAWSR" misc_feature 73488..74132 /locus_tag="Deba_0064" /note="Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197" /db_xref="CDD:32379" misc_feature 73494..73838 /locus_tag="Deba_0064" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(73503..73508,73641..73643,73665..73667,73725..73727, 73782..73784,73791..73796) /locus_tag="Deba_0064" /note="active site" /db_xref="CDD:29071" misc_feature 73641..73643 /locus_tag="Deba_0064" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(73650..73655,73659..73667) /locus_tag="Deba_0064" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 73791..73799 /locus_tag="Deba_0064" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 73944..74111 /locus_tag="Deba_0064" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(73947..73955,73992..74000,74022..74027,74031..74036, 74040..74054,74085..74087) /locus_tag="Deba_0064" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(73980..73982,73986..73988,73992..73994,74085..74093, 74100..74102,74109..74111) /locus_tag="Deba_0064" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 74290..74742 /locus_tag="Deba_0065" /db_xref="GeneID:9492500" CDS 74290..74742 /locus_tag="Deba_0065" /note="KEGG: gvi:gvip286 carbon dioxide concentrating mechanism protein; SPTR: Q7NIT9 carbon dioxide concentrating mechanism protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806038.1" /db_xref="GI:302341509" /db_xref="GeneID:9492500" /translation="MERAPDLPLEMLMLMPAAALGATFPAAPKTNCGGPRVEAHLLRD GFEMIARGWFDAEAVLKKLRPVLASCPVGGRLRLDFAQARGFDHLALSALVVVLRDHC RGVERIVIAGLEPRCLERLAQTGAENLFGAQWRAARRQGEIAFLKTQA" misc_feature <74455..74694 /locus_tag="Deba_0065" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors; Region: STAS; cl00604" /db_xref="CDD:153881" gene 74767..76110 /locus_tag="Deba_0066" /db_xref="GeneID:9492501" CDS 74767..76110 /locus_tag="Deba_0066" /note="COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR003018:IPR003594:IPR005467:IPR009082:IPR 004358; KEGG: sfu:Sfum_0281 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; SPTR: Q2YZR5 Sensor protein; PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /codon_start=1 /transl_table=11 /product="GAF sensor signal transduction histidine kinase" /protein_id="YP_003806039.1" /db_xref="GI:302341510" /db_xref="GeneID:9492501" /translation="MLFNQKFVSVPCGQREMHRRNQDLSFVLELSNALAAMNGPDEVL ETGLRKVRDQFGLETGRVYLVDHAREILVLHASQGLDVGGLEQMGLDEGFSGRAYSGR VFLAQRVDDLDDAKRVGMLRAKGLESVVCLPLIVRDAVIGVMNLGAKRVMELTMPLID LMMVAGNLIAVAAQNTLAATALERQKESIRFFAYTASHDLKGPAVGIHGLTRLLMRTA GEKLDPRGQAICRQIENAAGRMELLVSEINAYIAASEAPLDLQSVPVAEVLDEVRLDF ETRLRGLGVGFATPIDPPVVWADRLGLMRVFENLVDNALKYGGPNLSRIEVAHHETES HHVFSVSDNGVGLTPAQAEKIFDAFSRSETSRGSQGSGLGLGIVKAVASRHGGEAWVE CAPGKGCTFYFSVLKRAKADSPGDDTGPKADESASGGHAGPPPGGRVEAQSATFH" misc_feature 74887..>75204 /locus_tag="Deba_0066" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 75325..75507 /locus_tag="Deba_0066" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(75340..75342,75352..75354,75364..75366,75373..75375, 75385..75387,75394..75396,75451..75453,75463..75465, 75472..75474,75484..75486,75493..75495,75505..75507) /locus_tag="Deba_0066" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 75358..75360 /locus_tag="Deba_0066" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 75673..75981 /locus_tag="Deba_0066" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(75691..75693,75703..75705,75712..75714,75784..75786, 75790..75792,75796..75798,75802..75807,75880..75891, 75937..75939,75943..75945,75958..75963,75967..75969) /locus_tag="Deba_0066" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 75703..75705 /locus_tag="Deba_0066" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(75796..75798,75802..75804,75880..75882,75886..75888) /locus_tag="Deba_0066" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(76145..76654) /locus_tag="Deba_0067" /db_xref="GeneID:9492502" CDS complement(76145..76654) /locus_tag="Deba_0067" /note="InterPro IPR013740:IPR017936:IPR012336:IPR012335; KEGG: afe:Lferr_0206 redoxin domain protein; PFAM: redoxin domain protein; SPTR: C6MAN3 thioredoxin family protein; PFAM: redoxin" /codon_start=1 /transl_table=11 /product="redoxin domain protein" /protein_id="YP_003806040.1" /db_xref="GI:302341511" /db_xref="GeneID:9492502" /translation="MRKTLCLILAALTLLAPALPAAALSPVGGPLPAMTLPDADGRQH DLRAELQGKVGLIIYWSVSCPHCRKFMPQLLELARRYDGNPFVLIHVNGDGQAMAPAA VAYAKEHGLPQPVLLDVGPDDSEPFAESLDLIATPGVAVVDARGNLRLLQELEPDMAA VEKAVQEGF" misc_feature complement(76208..76552) /locus_tag="Deba_0067" /note="TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing...; Region: TlpA_like_family; cd02966" /db_xref="CDD:48515" misc_feature complement(order(76454..76456,76463..76465)) /locus_tag="Deba_0067" /note="catalytic residues [active]" /db_xref="CDD:48515" gene 76774..77598 /locus_tag="Deba_0068" /db_xref="GeneID:9492503" CDS 76774..77598 /locus_tag="Deba_0068" /note="COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: chy:CHY_0600 metallo-beta-lactamase family protein; SPTR: Q3AEH8 Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="metallo-beta-lactamase family protein" /protein_id="YP_003806041.1" /db_xref="GI:302341512" /db_xref="GeneID:9492503" /translation="MLKVRRFGPVTQYLMGVLHVGQVYYWCACYQFGDALIDAGAPLC AAELLAAVEGAGLARVAVTHHHEDHIGANALLRRRLGLEVLAPAAALKPLAQGFALRP YQEMVWGWPELHAAQALGPELTTNHGPLEVLATPGHCPDHVVFLHHESGLAFVGDAFF STTPKTARIDEDFAQGLESLRLLRDRRPKTMFLGLGQVVENATEALGQCIDHVERLAG EIERLADQGLDDGQIVEALFGRESSLRQLTDGHMSYRYFVAAFTRRRAAEKGAGPA" misc_feature <76960..77355 /locus_tag="Deba_0068" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 77716..78462 /locus_tag="Deba_0069" /db_xref="GeneID:9492504" CDS 77716..78462 /locus_tag="Deba_0069" /note="InterPro IPR011990; KEGG: sfu:Sfum_0584 hypothetical protein; SPTR: A0LFT1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806042.1" /db_xref="GI:302341513" /db_xref="GeneID:9492504" /translation="MLKKTLTLFAAAMLAIICLATASPAQDAAALVKQGDEAWAQRMD VAKAQEAANLYEQALAADAKCYEAAWKLARAYYRVGEKGPKDAQEATFEKSVNAAKKA TEINPDDPMGHYWLGVAYGKYGSAKGITKSLSLVDPIKEEMNFVISKDPKFEQGGPQR VLGRLYFKLPGLFGGDNDKAIEYLQEAVKIGPNYYLNQVYLAEALAEDGQDDKAKAML QEVIAAQAPAGMEPEMADWKAEAQKVLDDM" misc_feature 77860..78087 /locus_tag="Deba_0069" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature <77863..>78444 /locus_tag="Deba_0069" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" misc_feature order(77866..77868,77878..77880,77887..77889,77932..77934, 77998..78000,78010..78012,78019..78021,78064..78066) /locus_tag="Deba_0069" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(77923..77928,77932..77937,77944..77949,78055..78060, 78067..78072,78079..78084) /locus_tag="Deba_0069" /note="binding surface" /db_xref="CDD:29151" gene 78541..78783 /locus_tag="Deba_0070" /db_xref="GeneID:9492505" CDS 78541..78783 /locus_tag="Deba_0070" /note="InterPro IPR017896:IPR017900; KEGG: sfu:Sfum_3217 hypothetical protein; SPTR: A0LN88 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806043.1" /db_xref="GI:302341514" /db_xref="GeneID:9492505" /translation="MKHEFPRAALSLLEETLRKPVVDIGRCTLCEGCLAVCPQVFELN PVMGYIEVRELDHYPEDAVQEAINICPAKCLAWLEE" gene 78786..79397 /locus_tag="Deba_0071" /db_xref="GeneID:9492506" CDS 78786..79397 /locus_tag="Deba_0071" /note="COGs: COG1592 Rubrerythrin; InterProIPR003251:IPR004039:IPR009040:IPR009078:IPR 012347; KEGG: dol:Dole_2183 rubrerythrin; PFAM: Rubrerythrin; rubredoxin-type Fe(Cys)4 protein; SPTR: A8ZUF5 Rubrerythrin; PFAM: Rubrerythrin" /codon_start=1 /transl_table=11 /product="Rubrerythrin" /protein_id="YP_003806044.1" /db_xref="GI:302341515" /db_xref="GeneID:9492506" /translation="MRQWKCTVCGHLHQGKYPPENCPKCGADINRFILLEELPEALEK MLREAFAGESKAHMRNLSYAKVAVDEGYPQIAALFRAVAEAERVHAAEYLLFLQGVAG TTEENLKQAFESESSAEQSYYPPIIQEAFAQKRDDVAYAMVRARDVEQRHAQLYKEAL NAMVNDRQVEYHVCQVCGYVFENQPPDECPVCRAPRAQFKKTG" misc_feature 78795..78890 /locus_tag="Deba_0071" /note="Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected...; Region: rubredoxin_like; cl00202" /db_xref="CDD:185824" misc_feature order(78801..78803,78810..78812,78849..78851,78858..78860) /locus_tag="Deba_0071" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29431" misc_feature 78909..79388 /locus_tag="Deba_0071" /note="Rubrerythrin [Energy production and conversion]; Region: COG1592" /db_xref="CDD:31780" misc_feature 78912..79271 /locus_tag="Deba_0071" /note="Rubrerythrin, ferritin-like diiron-binding domain; Region: Rubrerythrin; cd01041" /db_xref="CDD:153100" misc_feature order(78942..78944,78951..78953,78963..78965,79041..79043, 79050..79052,79125..79130,79137..79139,79230..79232, 79239..79241) /locus_tag="Deba_0071" /note="binuclear metal center [ion binding]; other site" /db_xref="CDD:153100" misc_feature 79296..79388 /locus_tag="Deba_0071" /note="Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected...; Region: rubredoxin_like; cl00202" /db_xref="CDD:185824" misc_feature order(79305..79307,79314..79316,79350..79352,79359..79361) /locus_tag="Deba_0071" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29431" gene complement(79483..79824) /locus_tag="Deba_0072" /db_xref="GeneID:9492507" CDS complement(79483..79824) /locus_tag="Deba_0072" /note="COGs: COG2337 Growth inhibitor; InterPro IPR003477:IPR011067; KEGG: pph:Ppha_0265 transcriptional modulator of MazE/toxin, MazF; PFAM: PemK family protein; SPTR: B0BJH3 Putative integron gene cassette protein; PFAM: PemK-like protein" /codon_start=1 /transl_table=11 /product="MazE family transcriptional regulator" /protein_id="YP_003806045.1" /db_xref="GI:302341516" /db_xref="GeneID:9492507" /translation="MSQPYAPAAGDLVWLEFDPQAGGEQAGRRPALILSPLAYNQKTG LAIACPVTSHVKGYPFEVALPEDGKVRGVVLSDHVKILDWRARKAVKAGAAPSSVVDE VRARLAALLAF" misc_feature complement(79492..79824) /locus_tag="Deba_0072" /note="PemK-like protein; Region: PemK; cl00995" /db_xref="CDD:194001" gene complement(79821..80063) /locus_tag="Deba_0073" /db_xref="GeneID:9492508" CDS complement(79821..80063) /locus_tag="Deba_0073" /note="COGs: COG2336 Growth regulator; InterPro IPR007159; KEGG: dra:DR_0416 ppGpp-regulated growth inhibitor suppressor ChpR/MazE, PFAM: SpoVT/AbrB domain protein; SPTR: Q9RX99 PpGpp-regulated growth inhibitor suppressor ChpR/MazE, PFAM: SpoVT / AbrB like domain" /codon_start=1 /transl_table=11 /product="MazE family transcriptional regulator" /protein_id="YP_003806046.1" /db_xref="GI:302341517" /db_xref="GeneID:9492508" /translation="MPNKVAKWGHSLAVRLPLQIVRQAGLKAGDNVTISAGQDGSVII IPTRPQHDLDDLLGAITPDNLHGEADWGPAQGGEVW" misc_feature complement(79824..80063) /locus_tag="Deba_0073" /note="SpoVT / AbrB like domain; Region: SpoVT_AbrB; cl00877" /db_xref="CDD:186236" gene complement(80146..80754) /locus_tag="Deba_0074" /db_xref="GeneID:9492509" CDS complement(80146..80754) /locus_tag="Deba_0074" /note="KEGG: hmo:HM1_0635 hypothetical protein; SPTR: A6BZ10 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806047.1" /db_xref="GI:302341518" /db_xref="GeneID:9492509" /translation="MNGLEPIQARPRSGDEPLHDRGRSLGVTLADFWRWSASDLVSNA MRGVLAEWLVALAVGCAAGARQEWTAYDLQSPEGARIEVKSAAYVQSWAQKKLSDIIF RVPKTRPWDPLTNQTAAEPRRLADVHVFCLLTCQDKSAVDPLDLAQWRFFVLPTKTLD QRQRSQHSITLPSLRKLAGEPVAHGELAARISHAFAQQRQAD" gene complement(80754..81215) /locus_tag="Deba_0075" /db_xref="GeneID:9492510" CDS complement(80754..81215) /locus_tag="Deba_0075" /note="InterPro IPR011637; KEGG: dol:Dole_2885 DoxX family protein; PFAM: DoxX family protein; SPTR: A8ZYG3 DoxX family protein; PFAM: methylamine utilisation protein MauE" /codon_start=1 /transl_table=11 /product="DoxX family protein" /protein_id="YP_003806048.1" /db_xref="GI:302341519" /db_xref="GeneID:9492510" /translation="MKAVFPELISLGCRLFLAWLFLYASYDKVWHPADFALSVGRYEV LPVVLVNAGSVLLAWLEFFVGLMLLLGLWTRVAALWSVGLLAMFTGLMIYAWAIGAGY DCGCFPGQSDGHQAGLSAAARDVGFMLPALWLLWRPGRWLAVSVADDHERP" misc_feature complement(<80895..81176) /locus_tag="Deba_0075" /note="Methylamine utilisation protein MauE; Region: MauE; pfam07291" /db_xref="CDD:115916" gene complement(81212..81688) /locus_tag="Deba_0076" /db_xref="GeneID:9492511" CDS complement(81212..81688) /locus_tag="Deba_0076" /note="InterPro IPR001763; KEGG: dba:Dbac_0382 rhodanese domain protein; SMART: rhodanese domain protein; SPTR: C0GSB7 rhodanese domain protein; PFAM: rhodanese-like domain" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="YP_003806049.1" /db_xref="GI:302341520" /db_xref="GeneID:9492511" /translation="MAFDLKKLVCRALAVLALAAAAGLAFNLLMPQGVGWLPPELSEP LWRAVSLEQAAAMHKRGALFVDARDPGDFKLAQVRGAVNLYREEWDQMRGLLAGVLAK APAVVVYGRSQSRRPDAWVAQALRQDGMNDVYVMEADFEQWREAGLPVRQRRRAAQ" misc_feature complement(81257..81535) /locus_tag="Deba_0076" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158" /db_xref="CDD:29073" misc_feature complement(81359..81361) /locus_tag="Deba_0076" /note="active site residue [active]" /db_xref="CDD:29073" gene 81843..82451 /locus_tag="Deba_0077" /db_xref="GeneID:9492512" CDS 81843..82451 /locus_tag="Deba_0077" /note="COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: sfu:Sfum_1392 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: A0LI31 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="YP_003806050.1" /db_xref="GI:302341521" /db_xref="GeneID:9492512" /translation="MSDILAIYGSPRRRGNTAAVLARAVAGAREGGAMVEEVVLRDLK ISPCLEIYGCKNNGRCVINDDFQSLVDKLAACQGLMLASPMMFYAVSGHVKAMMDRCQ SLWVKKYWLERRPFGQLDPTKAGLFVSVGATTGKKLFDGALLSVKYFMDTLDMPLWRS LLYRGLDHEGEAAARPEIMAEAHAAGLEMAQMLSERAAGLPG" misc_feature 81852..82442 /locus_tag="Deba_0077" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 82514..83056 /locus_tag="Deba_0078" /db_xref="GeneID:9492513" CDS 82514..83056 /locus_tag="Deba_0078" /note="COGs: COG1778 Low specificity phosphatase (HAD superfamily); KEGG: dat:HRM2_27830 KdsC; SPTR: C0QJ60 KdsC; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family" /codon_start=1 /transl_table=11 /product="KdsC" /protein_id="YP_003806051.1" /db_xref="GI:302341522" /db_xref="GeneID:9492513" /translation="MTLDQPPRPKAPLDERDLRARLDDIRLVLLELEGTATDGAVSFA PDGGQSLRFCRADMIGLANIVAAGYKVVGLARRGLPAAEAFCRAAGVDFLAHDGDKGD LIQFIGLERGAKPFQTLYFGADMDDLEVMFQAGVAVCPAQASPWLRAAAQVVTQAAGG AGAVRELCDLLLREHSLHLE" misc_feature 82604..83032 /locus_tag="Deba_0078" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 83059..83688 /locus_tag="Deba_0079" /db_xref="GeneID:9492514" CDS 83059..83688 /locus_tag="Deba_0079" /note="KEGG: dat:HRM2_34640 hypothetical protein; SPTR: B2DD79 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806052.1" /db_xref="GI:302341523" /db_xref="GeneID:9492514" /translation="MFTSDKPTNYEKVYQELIPRLAAADLAGNAAALGLERQGEDVIA PVFGRRFIVGAAGVRQADGQPGGMIHRIALAYYLTHGGNGQPAGRFAPYRELPGGADF ARSLGQIVDARIAQSFSGRTATLEAACLALGGRGLAGQEISCDVGHVFEALPKIPMML TFYDADDEFPAEAKVFYDAAAPNFLDLECLASLGMILALELERAAEALG" misc_feature 83164..83646 /locus_tag="Deba_0079" /note="Domain of unknown function (DUF3786); Region: DUF3786; pfam12654" /db_xref="CDD:193131" gene 83694..84260 /locus_tag="Deba_0080" /db_xref="GeneID:9492515" CDS 83694..84260 /locus_tag="Deba_0080" /note="COGs: COG1636 conserved hypothetical protein; InterPro IPR003828; KEGG: dat:HRM2_23120 hypothetical protein; PFAM: protein of unknown function DUF208; SPTR: C0QER5 Putative uncharacterized protein; PFAM: Uncharacterized BCR, COG1636" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806053.1" /db_xref="GI:302341524" /db_xref="GeneID:9492515" /translation="MRLLLHICCAPCAIMPVADLRARGVEPMGLAFNPNVQPYVESAR RQATLEQWAAAQELRLIVQDEYDPESWLRAVAWREHERCRLCYHQRLTRAAQVAKKGG FEAFGTTLLYSVRQKHELIAQVGRQVAAERGVEFFYCDWRPLWREGVAQSLAQKLYRQ PYCGCIYSERDRFLGPPKAGRPGGKRIS" misc_feature 83700..84209 /locus_tag="Deba_0080" /note="Uncharacterized BCR, COG1636; Region: DUF208; pfam02677" /db_xref="CDD:190388" gene 84275..85957 /locus_tag="Deba_0081" /db_xref="GeneID:9492516" CDS 84275..85957 /locus_tag="Deba_0081" /note="KEGG: dde:Dde_2148 chemotaxis protein CheZ, SPTR: C8QZ51 Putative chemotaxis phosphatase, CheZ; PFAM: Chemotaxis phosphatase, CheZ" /codon_start=1 /transl_table=11 /product="chemotaxis phosphatase, CheZ" /protein_id="YP_003806054.1" /db_xref="GI:302341525" /db_xref="GeneID:9492516" /translation="MAANTPPEIILELSGGQLTIRTAEAIYRVVVAASPQPLQEQTAL PAASAAPPTKALAEAPAPADDDWGVFDLDGPAEPAQPIDGSKVQPTFDPRLEQGPGAA YYRDLSHDMYREIGALARRLSMSIRDVRHVNIDNVDLTSTGRQLEMAKDELQDVVKMT EQATMRIMDLGEDIQQAVGQTKSIMERLAPVAADCVTPGDDDQQRQARQRLAEALQGL SAFVGSLAENPLDQLARQANELIEQAQAAPPAQQPAAPPPAPNGPYYQFPLDLVFQTV YELCTNEAVKKHIKGMWDAAAEFSQEQIEAEMNKLAPAQPDGDNFLNLDLKAVLRVLF QATANERFQGVLKKMAQTSDQIFLEQTLPLEAMPGQAPAPAAAPETPPAPAAGPTPQV LAGLENLAQALQTAAAGLNPPPLPDDLEQLLEQALDEQPDSCNIVDPDLLRQLHAAEE HISVSVNSIIESLSFQDLSGQIIYRIVRLLSDFQVQLLAMVVSFGSKLKAREANERIT VDQSEKLAQEEVDRVLSTIKTPVAEKGDDQDPGDGSKLDQDAINDMLASMGF" misc_feature 84599..>84841 /locus_tag="Deba_0081" /note="Chemotaxis phosphatase, CheZ; Region: CheZ; cl01219" /db_xref="CDD:186389" misc_feature <85592..85954 /locus_tag="Deba_0081" /note="Chemotaxis phosphatase, CheZ; Region: CheZ; cl01219" /db_xref="CDD:186389" gene complement(86047..87843) /locus_tag="Deba_0082" /db_xref="GeneID:9492517" CDS complement(86047..87843) /locus_tag="Deba_0082" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: sat:SYN_00971 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Q2LSK6 methyl-accepting chemotaxis protein; PFAM: Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003806055.1" /db_xref="GI:302341526" /db_xref="GeneID:9492517" /translation="MTLKTKLILGGVILVSLPLLIVGVYSYVASSKALTANAEENALS TAQRLADMANTYMEMESRLIREVAVGNTTIAVAEKNHVGAADADVKELDRKLASFIKT VGQDYATIFVTNVKGDIIADGVGGGYKGLNVGDRAYLKEALTGKVAAGEIVLDKKTNK PVMLIAVPVMGQSGKVVGVTAAAIGMEFWNKNLTNVRMGQTGYPFMVNKDGLVIAHRV ADLVMDAVLSDIKGMERLNERVLARQSGVESYVYKGVPKIAGFAQVPLTNWCVIVTQD EAEFMAAVRENGLGMAVIGLVCLGLGVAAVWVFGVSVTRPIQRVIVGLTAAADQVGAA SSQVSSSSQQLAEGASEQAASLEETTASLEELSSMTAQNADNASQANILARDARASVD RASATMGKLTTSMDDIRRSSEETSKIIKTIDEIAFQTNLLALNAAVEAARAGEAGAGF AVVADEVRNLAMRAAEAAKNTTALIEGSVSKIKGGAELVSMVNEAFGEVATGSAKVVE LVGEIAAASSEQTQGLSQISSAAGTMDVVTQRVAAMAEESASASVEMHSQAEAMQGFV QELVGIVGGGHVESAAAPSPAPPADRRLLPRR" misc_feature complement(87196..87381) /locus_tag="Deba_0082" /note="Cache domain; Region: Cache_1; pfam02743" /db_xref="CDD:145738" misc_feature complement(86227..86655) /locus_tag="Deba_0082" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(88393..88827) /locus_tag="Deba_0083" /db_xref="GeneID:9492518" CDS complement(88393..88827) /locus_tag="Deba_0083" /note="COGs: COG3118 thioredoxin domain-containing protein; InterProIPR013766:IPR017936:IPR012336:IPR017937:IPR 005746:IPR006662:IPR012335; KEGG: tmz:Tmz1t_0651 thioredoxin; PFAM: thioredoxin domain; SPTR: C4ZN11 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin; TIGRFAM: thioredoxin" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="YP_003806056.1" /db_xref="GI:302341527" /db_xref="GeneID:9492518" /translation="MESNVQLLCPHCGAKNRAPAARLAENPACGRCKGRLLEAKPVEL DGPGLERMLAGDDLPLLVDFWAPWCGPCRSMAPAFAEAAGLLWPAARLAKLDTQANQA MAARFGVSSIPTMILFKGGREAARVSGAMPAAQIAAWARGRL" misc_feature complement(88411..88803) /locus_tag="Deba_0083" /note="thioredoxin 2; Provisional; Region: PRK10996" /db_xref="CDD:182889" misc_feature complement(88411..88662) /locus_tag="Deba_0083" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature complement(order(88612..88614,88621..88623)) /locus_tag="Deba_0083" /note="catalytic residues [active]" /db_xref="CDD:48496" gene complement(88940..90817) /locus_tag="Deba_0084" /db_xref="GeneID:9492519" CDS complement(88940..90817) /locus_tag="Deba_0084" /note="COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702:IPR000182:IPR016181; KEGG: dat:HRM2_05020 4-hydroxybutyrate CoA-transferase; PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; SPTR: C0QHQ8 Putative 4-hydroxybutyrate CoA-transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003806057.1" /db_xref="GI:302341528" /db_xref="GeneID:9492519" /translation="MLLRRQKDDWRSKTTPPAEALKRLEPGMSVFLSTGVAEPRTFVN TLLQSDASNVQDLELVQLVSFGDAVTPNRLSAHKFRLRTFFSGWVASEPIANGQVDLI PSRFAKIPQLLRAGRIRIDAAVVQITPPNEAGYCSMGMAVDVARMAMERASVVIGEIN DRVPMTYGDTFVPLSDFDILIESNQEPIYFNRWPTDAVFDQVAENVSSVIEDGSCIGF TMGPLYESLAKHLARKKNLGVHSPFFTDPLMDLVKSGAVTNRFKQAFKGRCLTSYALG TKELMAWLDRNPLVDFQGVDKVFDPVEIGKNRNFVAVFAGRKVDLSGRIALHVGKGNV AAEMGEANDFINGAELSPGGRTIFAMPSRNLKGEPNVLLSVDGLPNLFNMRESVDMVV TEYGCANLLGRSVRERAQAMIDIAHPDDRPSLVERAKAANIIYKDQIFLAESAHLYPV EFNETHTFKDNLVVRFRAIRPSDEEEMRRLFYRFSDQAVYYRYFSPIKSMPHAKMQEY VNVDYRKTVSIVALVGPAGQGHIIGEARYVRHPDKPYADVAFVVDEQYQGRGLASYMF KLLLSAARKRGLKGFTADVLANNTGMMKVFERSGLAVKARLEGGVYELTMPFEERGVT A" misc_feature complement(89501..90811) /locus_tag="Deba_0084" /note="Acetyl-CoA hydrolase [Energy production and conversion]; Region: ACH1; COG0427" /db_xref="CDD:30776" misc_feature complement(90248..90790) /locus_tag="Deba_0084" /note="Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550" /db_xref="CDD:111448" misc_feature complement(88982..89413) /locus_tag="Deba_0084" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" misc_feature complement(89018..89233) /locus_tag="Deba_0084" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(91003..91521) /locus_tag="Deba_0085" /db_xref="GeneID:9492520" CDS complement(91003..91521) /locus_tag="Deba_0085" /note="KEGG: fal:FRAAL0050 protein serine/threonine kinase; SPTR: Q0RUK6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806058.1" /db_xref="GI:302341529" /db_xref="GeneID:9492520" /translation="MILSACFSKTTAAAFVLALLAVLAAGPGRAVAAQVVYDGVLSCG DMSTVVRFVYDDQAKTVSEFELVDACSVRAGAILFGGERAEARAAASGVWRLAATMAV GPDGFFAYSDEKGNHLNGRIGGKPWSVPCVGGVATYLAHGAVGRPKAKLVDCGRGQYY MPCARWAANPRP" gene 91960..94089 /locus_tag="Deba_0086" /db_xref="GeneID:9492521" CDS 91960..94089 /locus_tag="Deba_0086" /note="COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR001753:IPR006176:IPR006108:IPR016040:IPR 008927:IPR018376:IPR013328; KEGG: 3-hydroxyacyl-CoA dehyrogenase, PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: B9RKN5 3-hydroxyacyl-CoA dehyrogenase, PFAM: enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding protein" /protein_id="YP_003806059.1" /db_xref="GI:302341530" /db_xref="GeneID:9492521" /translation="MKTDFKTVQVAIEDGVAVFTMNNPPVNQLSDYFIKDLVAAFEEA WKDDQVYAIVLTGEGKNFVAGADITQLQKMKNRDEAFGLVMEGHKFYNAIELSPKPVI AAINGNCLGGGLELAMCCHYRVAVKGVSLGLPEVSLGLLPGGGGTQRLPRIIGLPNAA QMMTTGKPIKAEVAFVRGLVDEVCAPDKLLKKAFGAAKMFKARMYNQKVRTARNTFYR LPSFNEKLHFMNYIRAMVGAQSKGYIAPGKILDCLDKGLSADFEADLKVEANGFADLV TSAVAKNLIGMFLNTRSAGRLPRIKDLKPAKPMKVAQLGGGVMGCGIVHLLLANGFEC VLWDINDAALAKGVESVKKTFAFMIKKKKMKPADLDKLLAEKLTTTTKLEDLGDVDLV IEAVLENMKVKQEIWLTLEKTCRPDVIFGTNTSALPITEMASVLKDPGRMIGLHFFNP AERMQLLEIICAQQTSDQTLATSVDFGRRIKKVPIVVNDGPGFYVSRQLGGLMGGSVF LVADGVSGEAIEKAMMNFGMPMGPATLADLTGIDINYHVNQTFARELGDRYTVHPLTE AIYNLGDYGRKTGRGYMDYTSGKPVPNPRLQQVVADYLKANNVAPKDMPEQEIIDAML GLAINEAALMIEQGICDRPADMDLAMIYGTGFPPYRGGILRYADTWGLKNVYETLVKL EGRYGKRFAPAKLIKDMAEKGETFYKE" misc_feature 91981..92520 /locus_tag="Deba_0086" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature 91996..94086 /locus_tag="Deba_0086" /note="multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154" /db_xref="CDD:183002" misc_feature order(92035..92037,92041..92043,92137..92139,92149..92163, 92281..92283,92287..92295,92359..92364,92371..92373) /locus_tag="Deba_0086" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(92155..92157,92293..92295) /locus_tag="Deba_0086" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(92233..92235,92257..92259,92320..92331,92365..92376, 92392..92394,92398..92406,92410..92415,92428..92433, 92437..92442,92446..92451,92458..92460,92491..92493, 92500..92502) /locus_tag="Deba_0086" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" misc_feature 92887..93426 /locus_tag="Deba_0086" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 93433..93714 /locus_tag="Deba_0086" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" misc_feature 93814..94083 /locus_tag="Deba_0086" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" gene 94139..94795 /locus_tag="Deba_0087" /db_xref="GeneID:9492522" CDS 94139..94795 /locus_tag="Deba_0087" /note="COGs: COG1309 Transcriptional regulator; InterProIPR001647:IPR011075:IPR009057:IPR012287:IPR 015893; KEGG: dal:Dalk_2545 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FFH8 Transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003806060.1" /db_xref="GI:302341531" /db_xref="GeneID:9492522" /translation="MAQQKRTEARKEQILQAAEKVFAAKGFHQATVSEVAKEAGLSDA TIYEYFSTKEELLFSIPLETTRRGAEIMEFHLGYIRGAANKIRSIIYHYLWFYKNHPD YASVALMILKPNRGFLQTEAYDIYRKASGVILDVVRDGVQSGEFRPDVDGHLVRHTIM GAIEHIVVRELLHESGRDILENVDPLTDMVIGGIKAENDLAGWNIRVSLEPPAGDKNK " misc_feature 94139..94735 /locus_tag="Deba_0087" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 94178..94318 /locus_tag="Deba_0087" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" misc_feature <94532..94717 /locus_tag="Deba_0087" /note="YsiA-like protein, C-terminal region; Region: TetR_C_4; pfam08359" /db_xref="CDD:116940" gene 94879..96087 /locus_tag="Deba_0088" /db_xref="GeneID:9492523" CDS 94879..96087 /locus_tag="Deba_0088" /EC_number="2.3.1.16" /note="COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: afu:AF1028 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: O29234 3-ketoacyl-CoA thiolase (FadA-1); TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_003806061.1" /db_xref="GI:302341532" /db_xref="GeneID:9492523" /translation="MREVVIVGYLRTAQSRSRPNDPARDWFHKLRADELLGTLLPELV KKVGIDAKEIDDFLVGSAQGVAENWSYGGRTPIFLANLPETISAKFVDQQCGSAMAGV QIGFMEIAQGFADTVMVGGMEHMTRIPMGGPTIERGIIAPNMGLYMDPKYKHWDMANS FNMGMTAEKLFGMNEDISVDDMNNWAVRSHQLAAKAQAEGFFDGEILPIEAPQADGSV MTVKIDQAVRGETSLEELRGLRPAFKKDGVITAGVSSPLNAAATSMMLMSKEKAQKLG LKPLATIRSIGFAGVDPTIMGAGPVPASQKALDYLGLKPQDIDFWEINEAFAIVVLNC IKHLGLDPERVNVMGGGLAIGHPLGATGNRLVGTLARILEAKGGRWGCANACVGGGQG VAMIIEREDY" misc_feature 94879..96078 /locus_tag="Deba_0088" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK06445" /db_xref="CDD:180563" misc_feature 94891..96075 /locus_tag="Deba_0088" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(94963..94965,95044..95046,95089..95091,95098..95100, 95110..95112,95143..95154,95176..95178,95197..95202, 95209..95211,95254..95256,95734..95736,95740..95742, 95746..95748,95806..95808,96043..96048) /locus_tag="Deba_0088" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(95161..95163,95944..95946,96034..96036) /locus_tag="Deba_0088" /note="active site" /db_xref="CDD:29411" gene 96490..99471 /locus_tag="Deba_0089" /db_xref="GeneID:9492524" CDS 96490..99471 /locus_tag="Deba_0089" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR013163:IPR013767:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000014:IPR000700:IPR011006:IPR009082:I PR001610:IPR004358; KEGG: dol:Dole_3265 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver; SPTR: A9A0Q1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Cache domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003806062.1" /db_xref="GI:302341533" /db_xref="GeneID:9492524" /translation="MKRYLGAVLPALLSVILFGVTVFGFLLPEVESQIIAKKREMIRE LTNTVWNILATYDAQVRGGLLDKDEAQRRALGRIRALRYGPEGKDYFWVNGLNEVMIM HPYRMDLEGQRLPQFKDIKGKDLLHAFVDVARQHGEGFVSYYWQWKDEPGQLKEKTSY IKLFQPWGWVVGTGLYKDDVEAEMRAMNRDMSLVGAAVLLLVTLLSGYLTYREMRAEG ERAAAQEVLRQTLDKYRAVLEASPDPVIVYNYVGLVDYVNPAFSRVFGWRADEVLGGK IDFVPDDEKEATLAAINAVYDHPDGLLSFESRRLTRDGRARNVMVSLAVYRGDGGAPL GMVVNLTDITSMKRSAEALRESEEKFRSISANALDGVVMIDPQGRITFWNQAATAIFG YAADETLGRELHPLLAPPRYHADYVKAFAEFGDSGTGKAVGRMLELVARRKNGQEFPA ELSVSSLQLHGQWYAVGIVRDITERKQAEEALRQSESRYRTILETVPYSIAISDLRSG ANLEINDGFCLLSGHSRQDALGKTALDLGLYNRPEDHLTLRDQLERDGEINGQPVTYR AKDGRLLECLVSVRRFVYAGRPCLLSVAQDVSALRQAEREQARLQAQLQRAQRMEAIG TLAGGVAHDFNNILQAISGYTQLIGGHPGLDQKVRRYAEDIDLAARRATDLVKRLLTF SRKVEPALQKVDLNRQIDHAVAMLERTIPKMVRITTRLDPDLKAVKADPGQMEQVLMN LGTNARDAMPEGGELMIETQNVRAEDLSPGAACQLTADEYVMLRVSDSGMGMDAETQK KIFDPFFTTKGVGQGTGLGLSIVYGIIEGHGGRISCYSQPGQGTVFEICLPVADDSLT EREAPEVVTVRQAQSNGETILVVDDEAAILDVSTELLQGAGYKVITARCGEDALEIYR TRGQAISLVIMDLGMPGMGGQRALQELKRLDPEVKVLISSGYSGDGPVKDSLAAGALG FIMKPYRLGDLLEKAHLAIQG" misc_feature 96580..96858 /locus_tag="Deba_0089" /note="Cache domain; Region: Cache_2; pfam08269" /db_xref="CDD:149365" misc_feature 97180..97548 /locus_tag="Deba_0089" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 97210..97518 /locus_tag="Deba_0089" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(97258..97260,97270..97272,97288..97290,97324..97335, 97414..97416,97429..97431) /locus_tag="Deba_0089" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(97318..97320,97327..97329,97351..97353,97360..97365, 97450..97452,97456..97458) /locus_tag="Deba_0089" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 97555..97935 /locus_tag="Deba_0089" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 97594..97905 /locus_tag="Deba_0089" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(97636..97638,97648..97650,97666..97668,97705..97710, 97726..97731,97807..97809,97822..97824) /locus_tag="Deba_0089" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(97696..97698,97708..97710,97747..97749,97756..97761, 97843..97845,97849..97851) /locus_tag="Deba_0089" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 97942..98283 /locus_tag="Deba_0089" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 97948..98151 /locus_tag="Deba_0089" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 98359..98541 /locus_tag="Deba_0089" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(98365..98367,98377..98379,98389..98391,98398..98400, 98410..98412,98419..98421,98470..98472,98482..98484, 98491..98493,98503..98505,98512..98514,98524..98526) /locus_tag="Deba_0089" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 98383..98385 /locus_tag="Deba_0089" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 98689..99033 /locus_tag="Deba_0089" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(98707..98709,98719..98721,98728..98730,98842..98844, 98848..98850,98854..98856,98860..98865,98932..98943, 98989..98991,98995..98997,99010..99015,99019..99021) /locus_tag="Deba_0089" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 98719..98721 /locus_tag="Deba_0089" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(98854..98856,98860..98862,98932..98934,98938..98940) /locus_tag="Deba_0089" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 99115..99447 /locus_tag="Deba_0089" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 99118..99462 /locus_tag="Deba_0089" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(99127..99132,99265..99267,99289..99291,99349..99351, 99406..99408,99415..99420) /locus_tag="Deba_0089" /note="active site" /db_xref="CDD:29071" misc_feature 99265..99267 /locus_tag="Deba_0089" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(99274..99279,99283..99291) /locus_tag="Deba_0089" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 99415..99423 /locus_tag="Deba_0089" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 99630..100007 /locus_tag="Deba_0090" /db_xref="GeneID:9492525" CDS 99630..100007 /locus_tag="Deba_0090" /EC_number="3.5.4.19" /note="COGs: COG0139 phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496; KEGG: dal:Dalk_3405 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; PRIAM: phosphoribosyl-AMP cyclohydrolase; SPTR: B8FLE7 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase" /codon_start=1 /transl_table=11 /product="phosphoribosyl-AMP cyclohydrolase" /protein_id="YP_003806063.1" /db_xref="GI:302341534" /db_xref="GeneID:9492525" /translation="MIELDFTKTGGLIPAIAQDAASGQVLMLAFINQQAWQKTLETGE AHYWSRSRQELWHKGGTSGHVQKIKAIYVDCDLDAVVYQVEQIGGAACHTGMRSCFYR RVEGDALVSEGERVFDPKEVYGK" misc_feature 99630..100001 /locus_tag="Deba_0090" /note="Phosphoribosyl-AMP cyclohydrolase; Region: PRA-CH; cl00344" /db_xref="CDD:193779" gene 100004..100879 /locus_tag="Deba_0091" /db_xref="GeneID:9492526" CDS 100004..100879 /locus_tag="Deba_0091" /EC_number="2.4.2.17" /note="COGs: COG0040 ATP phosphoribosyltransferase; InterProIPR013820:IPR013115:IPR011322:IPR018198:IPR 015867; KEGG: dal:Dalk_3406 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; PRIAM: ATP phosphoribosyltransferase; SPTR: B8FLE8 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase" /protein_id="YP_003806064.1" /db_xref="GI:302341535" /db_xref="GeneID:9492526" /translation="MKQPLKLGIPKGSLQEATVRLFAKAGWRINVNGRSYFPEIDDVD IECSLCRAQEMSLYVENGTLDAGITGRDWILENSSDVHYVEELIYSKVSSRPARWVLA VDKESGIETEADLAGKRVATEMVNFTKRYFAERDIPVAVQFSWGATEAKVVNGLADAI VEVTETGSTIRAHGLKIIKELMQSTTQLIANHAAWRDDEKRAKISQIALLLKAALVAE KLVGLKMNVPKIKFQDIVDTLPSLNAPTVAPLYNSDWFAVETIVEESKVRDLVPLLIA RGAEGIIEYSLNKVI" misc_feature 100004..100876 /locus_tag="Deba_0091" /note="ATP phosphoribosyltransferase; Reviewed; Region: hisG; PRK00489" /db_xref="CDD:179047" misc_feature 100016..100573 /locus_tag="Deba_0091" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature 100574..100876 /locus_tag="Deba_0091" /note="HisG, C-terminal domain; Region: HisG_C; cl06867" /db_xref="CDD:157475" gene 100893..102080 /locus_tag="Deba_0092" /db_xref="GeneID:9492527" CDS 100893..102080 /locus_tag="Deba_0092" /note="COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR004839:IPR015424:IPR004838:IPR001176:IPR 015421; KEGG: dol:Dole_1584 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: A8ZZY8 Aminotransferase class I and II; PFAM: Aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="aminotransferase class I and II" /protein_id="YP_003806065.1" /db_xref="GI:302341536" /db_xref="GeneID:9492527" /translation="MGVSRRAGDLPPFIVMDVLERAQELQAQGRDIIHLEVGEPDFDT PEAIKAAAQKAMTGGQTHYTHSLGLLELRQAIAAHYGRRYGVTVDPGRVLVSSGTSPA MLLMFAALIEPGQGHEVILSDPCYACYPNFINFVGGQVARVPVAEDDAFQYRPEAIAA AMNAKTRAIVINSPANPTGQLLDAGRMAAIAALAPGRPGGPYVVSDEIYHGLVYEGRE HSILEFTQDAFVLGGFSKLHAMTGWRLGYLIMPQAYVRPLQKMHQNFAICAPSMAQWA GVAALTQAEDDLARMVGVYAQRRRVMIDGLRGLGFKIPHEPCGAFYVLTRCDHLDPDD YRLAFHILENAGVAVTPGRDFGPGGHGFLRFSYANSQENILRAMARLAEYLARFYPNR AGG" misc_feature 100935..102053 /locus_tag="Deba_0092" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature 100989..102041 /locus_tag="Deba_0092" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(101184..101192,101268..101270,101418..101420, 101517..101519,101589..101591,101595..101600, 101622..101624) /locus_tag="Deba_0092" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(101193..101195,101298..101300,101496..101498, 101616..101624,101709..101711,101718..101720) /locus_tag="Deba_0092" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 101598..101600 /locus_tag="Deba_0092" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 102081..102674 /locus_tag="Deba_0093" /db_xref="GeneID:9492528" CDS 102081..102674 /locus_tag="Deba_0093" /note="COGs: COG0218 GTPase; InterPro IPR002917:IPR019987; KEGG: gbm:Gbem_3815 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; SPTR: C6MMA7 Small GTP-binding protein domain protein; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain" /codon_start=1 /transl_table=11 /product="ribosome biogenesis GTP-binding protein YsxC" /protein_id="YP_003806066.1" /db_xref="GI:302341537" /db_xref="GeneID:9492528" /translation="MDFVLHESAFMQSAVGPGGYPEPGPPEFAFAGRSNVGKSSLINC LLRRKNLVKVSQRPGRTQQINFFALNNDALRFVDLPGYGFAKVPLAIKAGWKKMIESY LESRPTLKAVVVIVDIRREPSPDDLMLLGWLLSLGLPAVVAVTKADKLSRNQAAQRLA KLRPQLAPYDAAPVVCSAVTGQGRQELWERLLARLAD" misc_feature 102177..102665 /locus_tag="Deba_0093" /note="The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and...; Region: YihA_EngB; cd01876" /db_xref="CDD:133278" misc_feature 102177..102197 /locus_tag="Deba_0093" /note="G1 box; other site" /db_xref="CDD:133278" misc_feature order(102180..102200,102240..102248,102255..102263, 102312..102314,102516..102518,102522..102524, 102609..102614) /locus_tag="Deba_0093" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133278" misc_feature 102252..102272 /locus_tag="Deba_0093" /note="Switch I region; other site" /db_xref="CDD:133278" misc_feature 102261..102263 /locus_tag="Deba_0093" /note="G2 box; other site" /db_xref="CDD:133278" misc_feature 102312..102323 /locus_tag="Deba_0093" /note="G3 box; other site" /db_xref="CDD:133278" misc_feature order(102321..102332,102351..102395,102402..102407) /locus_tag="Deba_0093" /note="Switch II region; other site" /db_xref="CDD:133278" misc_feature 102513..102524 /locus_tag="Deba_0093" /note="G4 box; other site" /db_xref="CDD:133278" misc_feature 102609..102617 /locus_tag="Deba_0093" /note="G5 box; other site" /db_xref="CDD:133278" gene complement(102767..103099) /locus_tag="Deba_0094" /db_xref="GeneID:9492529" CDS complement(102767..103099) /locus_tag="Deba_0094" /note="COGs: COG4802 Ferredoxin-thioredoxin reductase catalytic subunit; InterPro IPR004209; KEGG: dol:Dole_2967 hypothetical protein; SPTR: A8ZYZ7 Putative uncharacterized protein; PFAM: Ferredoxin thioredoxin reductase catalytic beta chain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806067.1" /db_xref="GI:302341538" /db_xref="GeneID:9492529" /translation="MTPRELYDALKKVQEPKGYFFNKDREFVLDMMQALLTNKERYGY MNCPCRLASGDRSKDADIICPCAYRAADVAQYGACYCALYVSAAWNEGKLPNEYVPER RPPEKMAF" misc_feature complement(102773..103087) /locus_tag="Deba_0094" /note="Ferredoxin thioredoxin reductase catalytic beta chain; Region: FeThRed_B; cl01977" /db_xref="CDD:186502" gene complement(103096..103350) /locus_tag="Deba_0095" /db_xref="GeneID:9492530" CDS complement(103096..103350) /locus_tag="Deba_0095" /note="COGs: COG0695 Glutaredoxin and related protein; InterPro IPR002109:IPR012336:IPR012335; KEGG: dol:Dole_2968 glutaredoxin; PFAM: glutaredoxin; SPTR: A8ZYZ8 Glutaredoxin; PFAM: Glutaredoxin" /codon_start=1 /transl_table=11 /product="glutaredoxin" /protein_id="YP_003806068.1" /db_xref="GI:302341539" /db_xref="GeneID:9492530" /translation="MANVAIKMYTLSTCSHCKSAKKLLNDNDIKYDMFEVDTCSPDER NKLIDEVRMYNPGCSFPTIVIGDKVIVGYREQEIKEALGL" misc_feature complement(103105..103335) /locus_tag="Deba_0095" /note="NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide...; Region: NrdH; cd02976" /db_xref="CDD:48525" misc_feature complement(order(103300..103302,103309..103311)) /locus_tag="Deba_0095" /note="catalytic residues [active]" /db_xref="CDD:48525" gene 103576..104607 /locus_tag="Deba_0096" /db_xref="GeneID:9492531" CDS 103576..104607 /locus_tag="Deba_0096" /note="COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060:IPR009057:IPR018062; KEGG: gvi:glr0326 AraC family transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Q7NNT4 AraC family transcriptional regulatory protein" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_003806069.1" /db_xref="GI:302341540" /db_xref="GeneID:9492531" /translation="MLQPAIQPDAAQAWPAAVAPRWLGGRSAAPPDFRLRDPQAQTWT DLADLPGHWGLALERGLSLHTAAFSFARAGEYAFEVSDAKLNFSFCTAGQSLTDVQIG PKRLRGVSQAPSVFTASFLPQAHGVWRPMAGDCRLIGLSMARRDFARLWRECAPQAPG PGFDPFFVGAAVTPEIARAMGGVSQALAERPASALLLQCRALELMILAIRQLARRWAD RPERGVPLSPRDVENLRAARQVLLDNLADPPSLAQLARRVGVNECKLKQGFRQMFGET PYGLLRQARLERAKGLLEAGEMNVCEASLAVGYANPGNFIGLFKRRFGQTPGEVRALA LRAAPSPRP" misc_feature 104218..104562 /locus_tag="Deba_0096" /note="AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:32389" gene complement(104636..105838) /locus_tag="Deba_0097" /db_xref="GeneID:9492532" CDS complement(104636..105838) /locus_tag="Deba_0097" /note="InterPro IPR011701:IPR016196; KEGG: mxa:MXAN_5357 RhtX/FptX family siderophore transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Q1D1G6 Siderophore transporter, RhtX/FptX family; PFAM: Major Facilitator Superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_003806070.1" /db_xref="GI:302341541" /db_xref="GeneID:9492532" /translation="MRSSRKYVLLAGLYVAQTLPGHFFSNVFPVVLREHGASLASIGY LQVIGLPWLLKFLWAPLVDRLVGPRGLHARVIVALEALFCLSTLALAFVDFRAHFALV VGLMTLSYAFAATQDVAVDALAIRLLSQRERGPGNAVQTGGNIVGALLGTAGGLALYQ LIGWSGVLIALALALLPPLLPLAGLGRRAAGAVGPPSRHGGMLGFFGQPGAKRWSLIM LASHGGSMASMMMSKPLLVDLGFSAVGIGLLTGVYGLGLGLVGAWAGGRIIVGLGRKA ALALGCLLSAVAAASLAPLALGLVSGPYLLTGLGLSGVGLGLTMTAVNTIAMDFARSG HEGADYSLQVAISMLGGGVVMGASGVLAQALGYLGLFALCALLCLGAAGLAWFFFRER RPAAATSG" misc_feature complement(<105410..105784) /locus_tag="Deba_0097" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cl11420" /db_xref="CDD:196224" gene complement(105847..106458) /locus_tag="Deba_0098" /db_xref="GeneID:9492533" CDS complement(105847..106458) /locus_tag="Deba_0098" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_5103 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: D1JG71 Putative uncharacterized protein; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003806071.1" /db_xref="GI:302341542" /db_xref="GeneID:9492533" /translation="MSEIFGGFIDDTARRPRGQWARKHYGQPKSHMRAFEAAMAALAP RGDDVYLEIGCGGGYFLDMVLAKVQRAAAIDHSADMAALARQKNQRAVEQGRLEVVHG DAEKLPWPDESFTCTANTAMWFFVRRPEAVLAELRRVLKPGGRIVIATARKSLLNRLL WAVYGLNLYDDQQMAGMLGRAGFVEIKIERQGLLGQLATARKA" misc_feature complement(106015..106308) /locus_tag="Deba_0098" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(106102..106104,106147..106155, 106228..106233,106282..106302)) /locus_tag="Deba_0098" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(106536..108596) /locus_tag="Deba_0099" /db_xref="GeneID:9492534" CDS complement(106536..108596) /locus_tag="Deba_0099" /note="COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010105; KEGG: rru:Rru_A0865 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C1SI40 Outer membrane receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent siderophore receptor" /protein_id="YP_003806072.1" /db_xref="GI:302341543" /db_xref="GeneID:9492534" /translation="MHFRITAALALATLLLAGPAPADEPARTTPPATYAIDEVTVTAD KLGRASQEVPASVSVYDEAELADMGLETTDDLFDRTPNMHMTTMGPQAMLGNPIVSMR GLSSFMTGAPVMSLLVDDVYYPGLSLDLLDIERVEVLRGPQGTMYGRNTEAGLINVIT RKPTTEPSGRAELELGDYNTQRARFSAGGAAIADKLLVRLAGRYENSDGYFSNDFGGA DDVDKHRNLDGRLTLDWLASPDLELSWTTDAQDYDSNYAEFALLDKVDNNPHHVSVDF AGEAEKRSVGSALRAQQKLGDLKLVSITSWRKMDASTYQDLDFTAYDIMRLKLKQDYQ TVGEELRLVSDEPGQALRWVGGLFVYHETDDLDYATELRPMSGMAGNLRQQGDTATTG TALFGQASYTLWELVELTAGLRYDHESKDFDYAWSGGAFGVPDLKGSTGHDFDAWLPK FAVSLRLHESLTPYASVSRGFKSGGFNIKSAAGRSFDSEFAWNYELGLKTQWFDRRLT LDLAAFYIDWSDLQVEQPDYPDFTVVNAAAAASHGFEAELRARPLSGLELLASFGCVR STFDEFKQGAADYADNDVPNVPAYTYRLGGVYRFLGGWFLSGEYIGVGPMYFDAANTK EQSAYGLANARAGYELKRVKTYFFVDNIFDETYATRAFAMSGQWYGRAGDPLTFGVKL VLEY" misc_feature complement(106557..108443) /locus_tag="Deba_0099" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:162535" misc_feature complement(106551..108431) /locus_tag="Deba_0099" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature complement(order(108117..108143,108177..108209, 108258..108278,108285..108302,108345..108374, 108402..108431)) /locus_tag="Deba_0099" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature complement(order(107559..107561,107640..107642)) /locus_tag="Deba_0099" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 108899..109702 /locus_tag="Deba_0100" /db_xref="GeneID:9492535" CDS 108899..109702 /locus_tag="Deba_0100" /note="COGs: COG1355 dioxygenase; InterPro IPR002737; KEGG: pca:Pcar_1651 dioxygenase; PFAM: protein of unknown function DUF52; SPTR: C8QZ40 Putative uncharacterized protein; PFAM: Memo-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806073.1" /db_xref="GI:302341544" /db_xref="GeneID:9492535" /translation="MVRQPAVAGRFYPAQAEALAAEVDRLLQTDQPPQPALAVICPHA GYVFSGRVAGQVFGQVSVPRRVLLMGPNHSGMGRPAALMSRGQWRTPLGLINLDDQLG QAIMDRAAYVEQDDLAHRNEHSLEVQTPFLQRRQAHLLLTPLCLALLGVQHCLDLGRA IAEAIASLGEPVLIVASTDMSHYIPAAQAKALDELAIERIMALDAEGLHHTVLGRGIS MCGVVPTAVALAAAVALGASRARLAAYANSGQVTGDEREVVAYAGLIID" misc_feature 108908..109696 /locus_tag="Deba_0100" /note="Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility; Region: MEMO_like; cd07361" /db_xref="CDD:153373" misc_feature order(108929..108931,109025..109027,109115..109117, 109265..109267,109433..109435,109442..109444, 109556..109558) /locus_tag="Deba_0100" /note="putative ligand binding pocket/active site [active]" /db_xref="CDD:153373" misc_feature order(109025..109027,109115..109117) /locus_tag="Deba_0100" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:153373" gene 109811..111226 /locus_tag="Deba_0101" /db_xref="GeneID:9492536" CDS 109811..111226 /locus_tag="Deba_0101" /EC_number="6.1.1.17" /note="COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterProIPR020058:IPR008925:IPR001412:IPR004527:IPR 020060:IPR014729:IPR020061:IPR020751; KEGG: sfu:Sfum_1366 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: A0LI05 Glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA synthetase" /protein_id="YP_003806074.1" /db_xref="GI:302341545" /db_xref="GeneID:9492536" /translation="MTQNNDNRPKVRTRFPPSPTGALHIGGGRTALFNWLFARHHGGQ FIMRLEDTDLQRSKPEHVTSILEAMEWLGLDFDEGPYYQTKRFDRYKQVVEQMLQSGA AYWCHCSPETLQAKREAAMASGAKPMYDGCCRGKGLGPAPGAVVRFAGPRTGSTTFND MVKGPITFDHAELDDLIIQRSDGSPTYHLAVIVDDIDMEVTHVIRGDDHVSNTPRQIL LIRALGHLEPRYAHIPMILGQDKARLSKRHGATAITDYREMGYLPEAMINALARLGWS HGDQEIFSRQELIELFDLDSVGRSAAVFDLDKLRSLNHKYIQKADPQRLAQLVQPFLA KLGLAAYDEAVLRKAIPELVQRTENLEQLAQWAQPYLVDQPEMDAKARQKFLIGPEAA AILRQVRELVAAGNVDDVAAMNEAFRALAARTGQKLGALAQPTRVALTGRTASPGIFE VMAILGRQAVLTRLDQAIAGA" misc_feature 109838..111214 /locus_tag="Deba_0101" /note="glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406" /db_xref="CDD:179296" misc_feature 109838..>110113 /locus_tag="Deba_0101" /note="catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808" /db_xref="CDD:173905" misc_feature 109880..109891 /locus_tag="Deba_0101" /note="HIGH motif; other site" /db_xref="CDD:173905" misc_feature <110354..110767 /locus_tag="Deba_0101" /note="catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808" /db_xref="CDD:173905" misc_feature order(110369..110371,110381..110383,110423..110428, 110432..110437,110510..110515,110537..110542) /locus_tag="Deba_0101" /note="active site" /db_xref="CDD:173905" misc_feature 110537..110551 /locus_tag="Deba_0101" /note="KMSKS motif; other site" /db_xref="CDD:173905" gene 111297..111370 /locus_tag="Deba_R0001" /db_xref="GeneID:9492537" tRNA 111297..111370 /locus_tag="Deba_R0001" /product="tRNA-Gln" /db_xref="GeneID:9492537" gene 111680..111755 /locus_tag="Deba_R0002" /db_xref="GeneID:9492538" tRNA 111680..111755 /locus_tag="Deba_R0002" /product="tRNA-Glu" /db_xref="GeneID:9492538" gene complement(111896..114217) /locus_tag="Deba_0102" /db_xref="GeneID:9492539" CDS complement(111896..114217) /locus_tag="Deba_0102" /note="InterPro IPR019734:IPR011990; KEGG: cts:Ctha_0459 hypothetical protein; SPTR: C4RCN7 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806075.1" /db_xref="GI:302341546" /db_xref="GeneID:9492539" /translation="MPLKLSDALLHLSCKIAEKLPHAAGLALAVAYCAASGQQIPAFV VGALAGDVAVKGVEGLCRMATDGASEAEVLAAADALASANARPIEELAAVIASLKDDL ANLPEALRQNLLAQIKKEQRELHEQWGRRIMELVGAPPFEIICTVAELLANEPKVSEH GLIHVVDRPESTAIFQAFKAGQTKTVLLRGRALSGKTFLAFKVAQRWIASGGRVAWIK YHTDINGYINAVKYDVHDHANLPLLIWDLPFNKALDETFFESLQLFPGPAMITVRVGE LNVAPRDLEALTQPGFKRCLCKNGFLNPVREKLDLFLGPVHDHRQVLSAIIEAHNYRL SLTESAKDAIAERMFVGQGADQTTLLGLGRAYLMALANLPPKPSMEPLDRLDVHRLEG PNRAALSANEQVKNIFAHTVGADEKEFLTALRLYKQWTFSEGMHEDVLTATIQACCDA GRTMRDCRADLTERGVLTHAPPWYWVWHDLQLDVAPNQPDDTANDVLARTVEHLARSL ACATNDQSKKTLAQAAGGFAAKLQQNGLWREALGLHDAALHARRNLAEAHVAGEEEAS ALAGTCNLGILLAEMGQRPAALALFQEALKIYRDLAREQPKAYLPNVAMTCNNLGALF YAMGQHAEAAKRHAEALMIRYACWLELPAAYAERLGKSLAAIRKLATNTEFSGRQQWL AELWRGMLGRFGGNLWLLCLPLCQTFAEAGLPALAMEPYVLLAITLEKQQDPAAAAQA AALVESLRPALGAEFEPLRQGLRAKFAPLLADL" misc_feature complement(112283..112636) /locus_tag="Deba_0102" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(112298..112300,112307..112309, 112319..112321,112355..112357,112436..112438, 112445..112447,112457..112459,112493..112495, 112577..112579,112586..112588,112598..112600, 112634..112636)) /locus_tag="Deba_0102" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(order(112337..112342,112349..112354, 112361..112366,112478..112483,112490..112495, 112499..112504,112628..112633)) /locus_tag="Deba_0102" /note="binding surface" /db_xref="CDD:29151" gene complement(114359..114637) /locus_tag="Deba_0103" /db_xref="GeneID:9492540" CDS complement(114359..114637) /locus_tag="Deba_0103" /note="KEGG: dde:Dde_3396 hypothetical protein; SPTR: Q30VV6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806076.1" /db_xref="GI:302341547" /db_xref="GeneID:9492540" /translation="MSLDSTGGARIEARGLLISNYEPMPVLCGTSHPGLARALRRRPA WGQVSAYLHGGNKQRFERSMTKTAKRTGSASSGYGGHFRAVQSFRYLG" gene 115126..116370 /locus_tag="Deba_0104" /db_xref="GeneID:9492541" CDS 115126..116370 /locus_tag="Deba_0104" /note="InterPro IPR000182:IPR016181; KEGG: pna:Pnap_3112 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: B1FBS0 heparinase II/III family protein; PFAM: acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003806077.1" /db_xref="GI:302341548" /db_xref="GeneID:9492541" /translation="MGKLQFLTDPFLRVNLDIDGARSNHPFFAQVVKHFWAESNARHP KLPLVKAFRHGVAIGVLPRCFDEYFALISPAARRNCKKAEREGFGFARINFNDHLADI AAIRCSSPVRQGAMPESYLCGDVKPCTDPPSQSNTHDYPYFGVLKDGRLLAYAGCLVS GEVMLIQHILGHADFQSFGIVPMMIVEMARYCLQNYPGVLYYGYGSYYGASDEMQRFK AKFLFTPHRVDWRLGCGQSAPAQPLTPPMFASESDEAANYQNVYRLVNPRPIATAART GVRFLVLRGPASGLVGFDYLRRLSGSAGALKSLLKICTRRRFFFMVEEDGDAVSTGWC TLAPCAHYEVEPQAVIIGPIWTAPGERRRGLATYALKNAINECIQHGASIIYIDTSRD NIAAQRVFANCGFGEPVMRYPR" misc_feature 116089..116340 /locus_tag="Deba_0104" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(116358..118037) /locus_tag="Deba_0105" /db_xref="GeneID:9492542" CDS complement(116358..118037) /locus_tag="Deba_0105" /note="InterProIPR001584:IPR012337:IPR009061:IPR009057:IPR 012287; KEGG: dvu:DVU1140 bacteriophage transposase A protein, PFAM: integrase catalytic region; SPTR: Q72CZ1 Bacteriophage transposase A protein, PFAM: Mu DNA binding, I gamma subdomain; Mu DNA-binding domain; integrase core domain" /codon_start=1 /transl_table=11 /product="integrase catalytic region" /protein_id="YP_003806078.1" /db_xref="GI:302341549" /db_xref="GeneID:9492542" /translation="MRGAYSTKELMTILKVLAKSSITRRAKKENWQSRPCSGRGGGCE WISASLPADVRAAITAHEAQNAVATRPSPSAGQAIPARAHEIGLAKLELHGAWRVHRL SAQAKTTADAAFLAAYNSGQSHPAVFKILGRVTKHQLYRWDRALKEAGGDYQALCDHR GWAQAQGVQGRISPEAQEILTKIYLDPERPSIALAYRGMCAVLAERGLPLPTESTTRR FIQRYSRENHDLVVLMREGEKALADKVGPYITRDAGQLAVGDVLVADGHRLNFDCIHP FTGKPARMCLILWLDWASRMPVGWEIMPEENTTAISAALFMAIKNLGQTPKVVYLDNG RAFRAKFFSSAVDDELPMQTRGLYQRLGIAVQYSRPYQARTKIVERFFGTFDAQCARL LPSYRGASVADKPAYLARNEKFHRARHNDAVPTIAQATEIIQAYFGWYGQQPHEGLDG RTPLEVFAAGRGPGVDMDALAWDFLWRKEVRPSRCRVRLATRPPEKWNPTSWIAWLGY GAKAKKKRVRTGGGRVSSPTGPANAGRGVTHWPVCAGVRVGGGALVSVYLG" misc_feature complement(117315..117614) /locus_tag="Deba_0105" /note="Mu DNA binding, I gamma subdomain; Region: HTH_Tnp_Mu_2; pfam09039" /db_xref="CDD:149935" misc_feature complement(116883..117242) /locus_tag="Deba_0105" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(118037..118528) /locus_tag="Deba_0106" /db_xref="GeneID:9492543" CDS complement(118037..118528) /locus_tag="Deba_0106" /note="KEGG: dvm:DvMF_0711 hypothetical protein; SPTR: B8DK72 Putative uncharacterized protein; manually curated" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806079.1" /db_xref="GI:302341550" /db_xref="GeneID:9492543" /translation="MPALYRRLQRRERIIMTMHPGQMPLFGQSLDVISPLKRALADTL RNCRLSREQVVDEINRLLEGEGLVLRVTLNSLEKWCAPSASHLPPVWVLPFFCQVVGS LRPLEVLSLPLGAHLMGEREQHLMELGRVQLEAKKVARARRRALEALEDSDRVFGWEG MGR" gene 118870..119628 /locus_tag="Deba_0107" /db_xref="GeneID:9492544" CDS 118870..119628 /locus_tag="Deba_0107" /note="COGs: COG2932 transcriptional regulator protein; InterProIPR001387:IPR019759:IPR015927:IPR010982:IPR 011056; KEGG: csa:Csal_1365 phage repressor; PFAM: helix-turn-helix domain protein; peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein; SPTR: Q1QXT8 Putative phage repressor; PFAM: Helix-turn-helix; peptidase S24-like" /codon_start=1 /transl_table=11 /product="phage repressor" /protein_id="YP_003806080.1" /db_xref="GI:302341551" /db_xref="GeneID:9492544" /translation="MSNNSSIRNNRVEIGGRFREIRKQLGLSQQEFASVLGVTQATAS RIERGEVSATVEALSGLLCAYPDLDVGYILCGNTSAIQSPCPDALEVAANICPVIRTM NSDLSDVQQENVADDYLAVPLLEGKAAAGAGGVTWNQVKSLVWVYKPELGQRRNCVAL RVWGDSMEPTIPDGSIVIVDLDQREPDGRGEHVWALRTEDGDTIIKRLRQTPQGVWVI ISDNSMSYGPSIVWTGDFHRLVIGRVIWMWRALP" misc_feature 118912..119088 /locus_tag="Deba_0107" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(118924..118926,118936..118938,119011..119013) /locus_tag="Deba_0107" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(118933..118935,119008..119010) /locus_tag="Deba_0107" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(118954..118959,118990..118992,118999..119001, 119011..119016) /locus_tag="Deba_0107" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature 119341..119604 /locus_tag="Deba_0107" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature order(119365..119367,119485..119487) /locus_tag="Deba_0107" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 120313..121518 /locus_tag="Deba_0108" /db_xref="GeneID:9492545" CDS 120313..121518 /locus_tag="Deba_0108" /note="COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104:IPR011010:IPR013762; KEGG: pde:Pden_3122 phage integrase family protein; PFAM: integrase family protein; SPTR: B6BEF5 Phage integrase; PFAM: Phage integrase family" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_003806081.1" /db_xref="GI:302341552" /db_xref="GeneID:9492545" /translation="MHLLTKKGIDALQPAETEFWVWDSKLSGFGVRVHPTGRKVFVAQ YRSQTGRTRRMALGQVGKITLDEARTLAQRVFSDVAKGLDPSANRKQGRTAPTVAELC ARYLAEHAQAKKKPASQVRDRRLIERFIIPQLGGEKVNTLSRADVAKLHNAIGRETPI QANRTLAVVSKMMTLAIRWGLRDEAKGNPAQFIERFREAKRERYLSADELAQLGQALA AAENEGWGFRPAIDAIRFLLLTGARVGEALSLRWEWIDRERACIFLPDSKTGRKALPI GGAVLAMLDGLAKQAGNPHVFPGQSLGRPLVDINTTWRKVRARAGLEGVRLHDLRHSY ASVGAASGLSLTLIGAILGHSEPSTTARYSHLANNPLAQAADMVSAKIAAALAAPVAE KVVALRRKE" misc_feature 120400..121398 /locus_tag="Deba_0108" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature 120595..121431 /locus_tag="Deba_0108" /note="Site-specific recombinase XerD [DNA replication, recombination, and repair]; Region: XerD; COG4974" /db_xref="CDD:34580" misc_feature order(121039..121041,121114..121116,121294..121296, 121303..121305,121372..121374) /locus_tag="Deba_0108" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature order(121039..121041,121294..121296,121303..121305, 121372..121374) /locus_tag="Deba_0108" /note="active site" /db_xref="CDD:29495" misc_feature order(121039..121044,121114..121116,121288..121296) /locus_tag="Deba_0108" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" gene 121771..121980 /locus_tag="Deba_0109" /db_xref="GeneID:9492546" CDS 121771..121980 /locus_tag="Deba_0109" /note="InterPro IPR009061:IPR010093; KEGG: pla:Plav_1818 hypothetical protein; SPTR: A7HU52 Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family" /codon_start=1 /transl_table=11 /product="DNA binding domain protein, excisionase family" /protein_id="YP_003806082.1" /db_xref="GI:302341553" /db_xref="GeneID:9492546" /translation="MSQPVVFLATPQAAELLGISRKTLEKWRLVGGGPSYCKVGRLVR YTSDDLQAWLDSRRRVSTSDPGVAA" misc_feature 121789..121944 /locus_tag="Deba_0109" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene 121983..122222 /locus_tag="Deba_0110" /db_xref="GeneID:9492547" CDS 121983..122222 /locus_tag="Deba_0110" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806083.1" /db_xref="GI:302341554" /db_xref="GeneID:9492547" /translation="MAGHADNTFPACFGNYQADCPYRDCDRATRLECQGAARLAEARK ANLLARRRRGELGPRAAYLVWRWNYAPNEVRDLDE" gene 122359..123408 /locus_tag="Deba_0111" /db_xref="GeneID:9492548" CDS 122359..123408 /locus_tag="Deba_0111" /note="KEGG: eic:NT01EI_1130 outer membrane usher protein FimD, SPTR: B8A6Z1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806084.1" /db_xref="GI:302341555" /db_xref="GeneID:9492548" /translation="MLDFGGENGTAHMQRLLGWLQRGGAPKPEAAQIAEMVNQNTGFT FTAPHLEQMLDRAYAAQGNAEANLTREIREWVLSTSGNFQSTQVNIELGLSTPVNKRK VSVVLGRLVSEGLIERVGKERGHFRVVDRSVTSIDWRSATLTAGLPILWPLDLHDRFE TMPGSVIVVAGESNSGKSAWMLATAQMNLASGKCKKISYFASSNESNALTLRKRIDAF GLPDSAWEGFEASRPGGEFADVIDPEGLNLIDYLEVHSDFYEIGGKLAAISEKLRDGV AVVGIQKAPGVELARGGAMTLDKATAYLALHRGDVANGEAHTLKLPKVKYPKVDYASK PIKFKLAGGCRFVRA" gene 123441..123674 /locus_tag="Deba_0112" /db_xref="GeneID:9492549" CDS 123441..123674 /locus_tag="Deba_0112" /note="KEGG: dol:Dole_2951 hypothetical protein; SPTR: A8ZYY1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806085.1" /db_xref="GI:302341556" /db_xref="GeneID:9492549" /translation="MRETATKPPGGIPRARLKTCDDVRRFLAATINRVNRGELDHQIG GRLAYMANILVATIRDSDFEQRLAALEGQGNGR" gene 123664..123852 /locus_tag="Deba_0113" /db_xref="GeneID:9492550" CDS 123664..123852 /locus_tag="Deba_0113" /note="KEGG: ank:AnaeK_1667 protein of unknown function DUF323; SPTR: B4ULN8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806086.1" /db_xref="GI:302341557" /db_xref="GeneID:9492550" /translation="MGVESIRRRLARLEAGQPEKNICAHDWGVPRFATEDAWFRAAKA QQAELLAVERDRRTPHAQ" gene 123842..124054 /locus_tag="Deba_0114" /db_xref="GeneID:9492551" CDS 123842..124054 /locus_tag="Deba_0114" /note="KEGG: sen:SACE_2979 hypothetical protein; SPTR: A4FDY2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806087.1" /db_xref="GI:302341558" /db_xref="GeneID:9492551" /translation="MPNDALRRRLQALETAPRRTAKRPLWIEGPGDAATARACDGQVF ARQAGEPWTEFKNRVEASKAPLIICN" gene 124072..124707 /locus_tag="Deba_0115" /db_xref="GeneID:9492552" CDS 124072..124707 /locus_tag="Deba_0115" /note="KEGG: rce:RC1_0507 SMC family protein; SPTR: B6IR58 SMC family protein" /codon_start=1 /transl_table=11 /product="SMC family protein" /protein_id="YP_003806088.1" /db_xref="GI:302341559" /db_xref="GeneID:9492552" /translation="MKKQITATAEALHATAGQITRACLAHEKAQAAISPDLRPEVAKA RLGEARQALDVAVKEPLSAIREARPQAEALRQRLGDVEACLLLAGMAGPEQAAVNASD SLLIAALASLTTDSLLDLAGRGKPLVVLLARQELARRVADKHAPVELVAAFDATALER FGRPDLIRQIADAEREALAAERRLLEAHGPAGDVAVRKLALAHAEAALPAA" gene complement(125037..125123) /locus_tag="Deba_R0003" /db_xref="GeneID:9492553" tRNA complement(125037..125123) /locus_tag="Deba_R0003" /product="tRNA-Leu" /db_xref="GeneID:9492553" gene 125343..125627 /locus_tag="Deba_0116" /db_xref="GeneID:9492554" CDS 125343..125627 /locus_tag="Deba_0116" /note="KEGG: aha:AHA_1305 protease LasA; SPTR: C7Z5G2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="protease LasA" /protein_id="YP_003806089.1" /db_xref="GI:302341560" /db_xref="GeneID:9492554" /translation="MQHSDATTTAPAEQFAAAPLLARPRVELLAEMLHQRLENDRQPQ RVMPLPAGVARDLRPHLPNASNLALGVYINRKMVNSYPLLFTTLAMANPN" gene complement(125636..126946) /locus_tag="Deba_0117" /db_xref="GeneID:9492555" CDS complement(125636..126946) /locus_tag="Deba_0117" /EC_number="2.7.2.3" /note="COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576:IPR015824; KEGG: dal:Dalk_0244 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: phosphoglycerate kinase; SPTR: B8FMT6 phosphoglycerate kinase; PFAM: phosphoglycerate kinase" /codon_start=1 /transl_table=11 /product="phosphoglycerate kinase" /protein_id="YP_003806090.1" /db_xref="GI:302341561" /db_xref="GeneID:9492555" /translation="MTIHGSHPGLPLLQDADLQGKVVLVRFDHNVVKKGRIIDPFRID RTLGTLFDIVVRGGRPILMTHVGRPLDKKAGVINTGPDSAVDAIVDYLESKLHSRFLV PSLPAGPQGIQAIDTSINLAIKRLRAGEVAGIYLPNTRWFTGEESKGPERQSFALQLA GLADIFVNDAFGSWQAHASTVDITQHLPSYAGWLLQAEIRHLAEVLEPARPFVAVVAG AKYDTKIGPINALYDQVDKLILGGVIYNTYLCAKYGVRIQGVAEEDIAAAGELVRKDK AAGKIVELPLIVESDVLGRQEGAFRTIPLSELTPGRHLGYVLDIDAASFDDPAVREAL GQARTIFVNAVMGFTPHFTSGSQALDTTIDANRQAKKLYGGGDTLQEFKDLCPGLYLS VLDDAQYYFFTGGGSVLKAIEERSPYGLAPVAALIENAKRFGRR" misc_feature complement(125663..126910) /locus_tag="Deba_0117" /note="Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level...; Region: Phosphoglycerate_kinase; cl00198" /db_xref="CDD:185821" misc_feature complement(order(126527..126529,126752..126754, 126821..126823,126857..126859,126863..126865)) /locus_tag="Deba_0117" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29400" misc_feature complement(order(125738..125746,126323..126325, 126326..126331)) /locus_tag="Deba_0117" /note="hinge regions; other site" /db_xref="CDD:29400" misc_feature complement(order(125813..125821,125903..125908, 125912..125914,125918..125920,126002..126004, 126218..126220)) /locus_tag="Deba_0117" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:29400" misc_feature complement(125816..125818) /locus_tag="Deba_0117" /note="catalytic site [active]" /db_xref="CDD:29400" gene complement(127058..127633) /locus_tag="Deba_0118" /db_xref="GeneID:9492556" CDS complement(127058..127633) /locus_tag="Deba_0118" /note="COGs: COG2320 conserved hypothetical protein; InterPro IPR007344; KEGG: geo:Geob_2091 protein of unknown function UPF0157; PFAM: protein of unknown function UPF0157; SPTR: B9M8V0 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0157)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806091.1" /db_xref="GI:302341562" /db_xref="GeneID:9492556" /translation="MDEQLRQKIARVVAEPVEIVDPDPRWPALFAREKAHLLACLPDG AIDRLSHCGSTAVPGLPAKPIIDILALTPGPASARDVVAPILEAQGYDYFWRPSFGDD TPPYYAWFIKRDAAGRRTHHIHLIEAHFPQWDWLLARDYLRENPAEAKRYARLKLTLA KRYAADRIAYTKAKAAFLGALTAKAKAAAGL" misc_feature complement(127124..127594) /locus_tag="Deba_0118" /note="Uncharacterised protein family (UPF0157); Region: UPF0157; cl00987" /db_xref="CDD:193998" gene complement(127713..128696) /locus_tag="Deba_0119" /db_xref="GeneID:9492557" CDS complement(127713..128696) /locus_tag="Deba_0119" /note="InterPro IPR018247; KEGG: esa:ESA_03941 hypothetical protein; SPTR: A7MQ19 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806092.1" /db_xref="GI:302341563" /db_xref="GeneID:9492557" /translation="MAYSLITRKRLGFLACIVMLPLILGLAGCKGLEMANAGQNESPR LARTLESYEQAGKYWGKKLWAQGTKPTSPLDMSFVHALIDPNNLDYFKVHSDLKEAFK KGFRLGYEDRIADLVLGPHIRKAAAEIGEYTSRNFVDVITAFEEGWACTLKNAVDIFI VLISEGSLADREDFINAFTVIYRQKYDATQEILRSGSWMTQTSEGGTVLYLDYSKGRA LGALDIPSPQSLKTEIYHQTFKVMGDEWGRRYKTNLIKRDELIDLLRRTKPALKDVPG NNLGIIYAAFVESFGPDGKEVFIDLIGEAGYDHKPKALKLDKGKAGRGRGK" gene complement(128900..129667) /locus_tag="Deba_0120" /db_xref="GeneID:9492558" CDS complement(128900..129667) /locus_tag="Deba_0120" /note="COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: hau:Haur_2614 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A9B0E3 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_003806093.1" /db_xref="GI:302341564" /db_xref="GeneID:9492558" /translation="MSEIKYGLDGKVALITGGSRGIGLGVAQAMAAEGANVVICGRKQ QTLDEAAQAIDGQPLALACHIAKEDQVEAMFAAVVEKFGRLDILVNNVGMNLMSPQLA DLDYGLWSKIIQSNLDGAFLCSRKAAAIMRGQNSGKIVSISSVAGRIATPAMTVYGVA KAAVEMLTKVLAAELAPHNVQVNAVAPAMVKTGFSAPFWGNDELRCKIEATIPLGRIA EVEDIVHPVLFLASQGARFITGQTIVVDGGATITQPL" misc_feature complement(128924..129649) /locus_tag="Deba_0120" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(128930..129631) /locus_tag="Deba_0120" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature complement(order(129089..129094,129098..129109, 129185..129187,129197..129199,129236..129244, 129323..129325,129389..129397,129473..129481, 129539..129547,129602..129613,129617..129619)) /locus_tag="Deba_0120" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature complement(order(129185..129187,129197..129199, 129236..129238,129320..129322)) /locus_tag="Deba_0120" /note="active site" /db_xref="CDD:187544" gene 129945..131591 /locus_tag="Deba_0121" /db_xref="GeneID:9492559" CDS 129945..131591 /locus_tag="Deba_0121" /note="COGs: COG0033 phosphoglucomutase; InterProIPR005844:IPR005845:IPR005846:IPR005843:IPR 016055:IPR016066:IPR005852; KEGG: gur:Gura_2654 phosphoglucomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: A5G4W1 phosphoglucomutase, alpha-D-glucose phosphate-specific; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific" /codon_start=1 /transl_table=11 /product="phosphoglucomutase, alpha-D-glucose phosphate-specific" /protein_id="YP_003806094.1" /db_xref="GI:302341565" /db_xref="GeneID:9492559" /translation="MHPLAGKPAPREILIDTPRLVSAYYTLRPEADDPAQRVSFGTSG HRGSSLDGAFNEAHVLAISQAIAEYRAGRGIDGPLFMGIDTHALSWPAFVTALEVFAA AGVTTMIQDGFGHTPTPVISHAIVCHNRGRADHLADGVVITPSHNPPADGGFKYNPPH GGPADTAVTKWIEDRANQILADGRRQARRVDFAKALKADCVVRHDYIGPYVADLANVV DLEAVAQAGLKLGVDPLGGSTLAFWEPIARRYGLDLEVVNPVIDPTFGFMTVDKDGKI RMDCSSPQAMAGLIQHRQSFDVAFGNDPDGDRHGIVTRQAGLLNPNHYLAVAIGYLFA HRPGWPAGAAVGKTLVSSSMIDRVAAELGRPLKEVPVGFKWFVDGLIDGGYGFGGEES AGASFLRRDGAAWTTDKDGLIMDLLAAEITARTGKDPAQLYAELTQRHGDPVYQRSDA PASREQKAVLAKLSPEMVPADELAGEPILAKLTHAPGNGAAIGGLKVVTQNGWFAARP SGTEDIYKIYAESFKGRQHLAQIQQEAQEIVGQALARAGA" misc_feature 129945..131576 /locus_tag="Deba_0121" /note="phosphoglucomutase; Validated; Region: PRK07564" /db_xref="CDD:181032" misc_feature 129996..131561 /locus_tag="Deba_0121" /note="This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl...; Region: PGM_like3; cd05801" /db_xref="CDD:100094" misc_feature order(130065..130067,130071..130073,130080..130082, 130377..130385,130407..130409,130851..130853, 130857..130859,130863..130868,130992..130994, 131055..131063,131112..131114,131118..131120, 131124..131126,131463..131465,131469..131477, 131490..131492) /locus_tag="Deba_0121" /note="active site" /db_xref="CDD:100094" misc_feature order(130071..130073,130377..130379,130866..130868, 130992..130994,131055..131057,131061..131063, 131112..131114,131118..131120,131124..131126, 131463..131465,131469..131477,131490..131492) /locus_tag="Deba_0121" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100094" misc_feature order(130377..130379,130851..130853,130857..130859, 130863..130865) /locus_tag="Deba_0121" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100094" gene 131598..133079 /locus_tag="Deba_0122" /db_xref="GeneID:9492560" CDS 131598..133079 /locus_tag="Deba_0122" /note="COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: drt:Dret_1767 sodium:neurotransmitter symporter; PFAM: sodium:neurotransmitter symporter; SPTR: C8X3Q4 Sodium:neurotransmitter symporter; PFAM: Sodium:neurotransmitter symporter family" /codon_start=1 /transl_table=11 /product="sodium:neurotransmitter symporter" /protein_id="YP_003806095.1" /db_xref="GI:302341566" /db_xref="GeneID:9492560" /translation="MAGEIWGSRAGFVLTCIGAAVGLGNIWRFPYMAYQNGGGAFLLP YFFAVLTAGLPMMMLEFSLGARTGQTAPRAMAWLGRWGWLGWWQVGLLFILATYYSVV VSWCLCYVVVAVFQGWGGDANAFFYGRFLELGASGFDFGRFRWPIWGASCACWALCAG LTYLGLQRGLARANRLMLPLLLGLTLFMIGRLLLAPGALEGVNWLFEPDFAKLASIDV WISAYGQVLFSTSVAVSALITYASRLPKGSDINNNAAVTVLTNSGFDMLAGVMIFAAL CMMAAKTGQSLDKVVDSGISLAFVTIPAALDLTPAPRLLGVLFFLALCCAGLSSLVAM VEGVAAPLKDIVGLGRRKGAMLVCLAGLAGGTAFAFGDGLRLLGAVDGVVSNIGMTSG ALLEVVAAAWFSGKLGQLWRSANAVSDFPVGAWWLFCLRFVTPLFLGLLYIFNIIEKV REYIAGGQDAGLIACGWAALLGALAWALWRQSRDASPGRESAR" misc_feature 131607..132941 /locus_tag="Deba_0122" /note="Sodium:neurotransmitter symporter family; Region: SNF; cl11976" /db_xref="CDD:196291" gene 133076..133204 /locus_tag="Deba_0123" /db_xref="GeneID:9492561" CDS 133076..133204 /locus_tag="Deba_0123" /note="KEGG: vfi:VF_2632 hypothetical protein; SPTR: B1WN40 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806096.1" /db_xref="GI:302341567" /db_xref="GeneID:9492561" /translation="MSLGAIITMVLGLTITWGGVAWCLRRAIKASPRRRARRSDQS" gene 133201..133893 /locus_tag="Deba_0124" /db_xref="GeneID:9492562" CDS 133201..133893 /locus_tag="Deba_0124" /note="InterPro IPR009875:IPR003006; KEGG: dvl:Dvul_0573 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: Q728C0 Putative uncharacterized protein; PFAM: PilZ domain" /codon_start=1 /transl_table=11 /product="type IV pilus assembly PilZ" /protein_id="YP_003806097.1" /db_xref="GI:302341568" /db_xref="GeneID:9492562" /translation="MKQIDELAVASGSGAINDPKQLAAALRVGHQVMIQKQGANARFR AVIVGWSDDRYVIAELPRSQTISGHVAAGDELVLRYILRGVVYAFVCRVMHVAFDPSL AVLAWPGGMSALPLTTERRLSVQIPATMEIDSEETGGVTLLATVTDVSSGGCQVEAVT VGGPALNMDQGVRAKLRLSLVGNRREKTVETEIRNVMVSAGKVILGMSFVDNAGLDLR ELAEEFFSAGGQ" misc_feature 133312..133524 /locus_tag="Deba_0124" /note="Flagellar protein YcgR; Region: YcgR_2; pfam12945" /db_xref="CDD:193418" misc_feature 133555..133878 /locus_tag="Deba_0124" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene complement(133944..134903) /locus_tag="Deba_0125" /db_xref="GeneID:9492563" CDS complement(133944..134903) /locus_tag="Deba_0125" /note="KEGG: tau:Tola_1087 PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: C4LDB7 PpiC-type peptidyl-prolyl cis-trans isomerase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806098.1" /db_xref="GI:302341569" /db_xref="GeneID:9492563" /translation="MRFNRAKHVAKIHLILAMSAALLLASAGAALAAGVWHKLEKQNI VVIGDRVVDIAYNLGVYPAAMGVRCSIWPLCDKIKMLAKPLGCPECLINAKQDNLIDF INENNVKLVIIEKSDPFCILKPDVKPTDVAPALKGLDVKVEYVDFSKGIEGAIVQTAA LLGKKKAGQALAATYAKASADLEAKIAQGKPGKRVVVLNGVYQPETTKTFIRVETPGG YSDKFILGPLGCQNVGDGLVPKGQTPDKGHVTIRKLDALATIQPQAIVITGDGAAVQK ALAATVAKHPELGRTPVYCLPLYIDSSVIERPQIVGKWLWALR" gene complement(135006..135599) /locus_tag="Deba_0126" /db_xref="GeneID:9492564" CDS complement(135006..135599) /locus_tag="Deba_0126" /note="InterPro IPR000883; KEGG: pca:Pcar_0850 hypothetical protein; SPTR: Q3A6A1 Putative uncharacterized protein; PFAM: cytochrome C and Quinol oxidase polypeptide I" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806099.1" /db_xref="GI:302341570" /db_xref="GeneID:9492564" /translation="MGTLTNVDQTESARAMTQTSLGKTTAIRFMLASMLFFAMGTIEG LMHPTKFAFQEFYAFVLGLEPRHIKPFFGNFVSKIHVHVALVGWATTGLMGLFYFAAE AVKGGNRYRAPLCLGNLVLQVMGVLTLAIGFHLVGVVAIPSGFSEGSPEFRAIAGGVK QVVVVGGAMLLVSCLLFIHNVGKTLLSPSEKLTQQTG" gene complement(135587..137512) /locus_tag="Deba_0127" /db_xref="GeneID:9492565" CDS complement(135587..137512) /locus_tag="Deba_0127" /note="COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: pca:Pcar_0852 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q3A699 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003806100.1" /db_xref="GI:302341571" /db_xref="GeneID:9492565" /translation="MRKSMITAMLAGAACLALAAGPGLADQAGPGANAETLEPMVVSA TLAEQKLSRAPASIQVVDQAQIQMMGADSVSQALSEVTGLVLESESGRVISPSIRGAG PLHTLVLIDSRRMAPGYRGLADLNQIPVTMIERIEIVRGPSSALFGSDALGGVVNIIT RKPPKEKTVAGADVKVGTNTHSGGDEVLPQAYAGLGVAPFRFIVGGAYRGQNGWDYDG VAPDDGDDLKQGYVSGQAAVDLGEHHALSLGGYYNDFKRQGLRDIQNALTDRDATDVN SEIFVNYDGTFAERYGVFLQAYQSKYKTDIDLTPRVTDPYYLTNEEYERTQYEGRFSA RIADFATATLGGELREDSRGADNVSPEYDSENKAGFGQVDMVFFERLNLVAGLRVDDH SEFGSEWSPRVAASFALTDYARIKASYGHGFRAPIANELYVTTYQRRGKDTYLPNKDL QPETSQTYEIGLQGSLDVSRGLDVELTYFHNDIDDLIEAVLQSSRGSGSSLKNTYKYE NIAQAETSGLELLTAINLPCGWRLGAGATYMKTENKQTGEQLADQPEFKGNLNAQWSI KPLGLRARVAFNWFSGAEDGLGGSLDDYTTLDAWLGKDLWANTQVYAGMKNIFDTEVA AYDIQPAFVYLGFRWEL" misc_feature complement(135641..137413) /locus_tag="Deba_0127" /note="Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]; Region: FepA; COG4771" /db_xref="CDD:34384" misc_feature complement(135602..137344) /locus_tag="Deba_0127" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature complement(order(137033..137059,137093..137125, 137168..137191,137210..137227,137258..137287, 137315..137344)) /locus_tag="Deba_0127" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature complement(order(136499..136501,136580..136582)) /locus_tag="Deba_0127" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene complement(138015..140189) /locus_tag="Deba_0128" /db_xref="GeneID:9492566" CDS complement(138015..140189) /locus_tag="Deba_0128" /note="COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692:IPR014395; KEGG: dal:Dalk_4289 peptidase S45 penicillin amidase; PFAM: peptidase S45 penicillin amidase; SPTR: B8FMD1 peptidase S45 penicillin amidase; PFAM: Penicillin amidase" /codon_start=1 /transl_table=11 /product="peptidase S45 penicillin amidase" /protein_id="YP_003806101.1" /db_xref="GI:302341572" /db_xref="GeneID:9492566" /translation="MKLGHKKITLRGADGAVEIIRGVGGVPVLEAASTRDMQFGLGWT HAADRQLEALLMRVLLRGRAAECLQGDPALIEIDKFMRLMDFLPQADLEGEMAKLQPQ VRAELDSYCAGFNQGLADCGLIWEMRLMGYKPDPWSVADCLLLGKAFGFVGLVDAQMG AQRLLIQMIQNDLPEAKIRELFPYLSEPIDYDLIKKIELSPPLVPEAVKWLAKLPKFQ ASNNWAVSGRHTASGAAFLCGDPHLEVNRLPAIWQEIVAHLPDDTIIGACIPGAPGPI VGRTSRIAWSATYSFMDMLDFRIEQCQGGKYRRGEQWREFRARQEIIKVKKGQPISFT VYENEHGVLEGDPFAEGHKLVLGWSARHGCGAGEFNGLLNLLRCQDVAQAMACFRELD AATFNFVIADDSGNIGYQMSGRMFQRAPGLSGLLPMPGWEAKHNHQGYVDKHKLPSQY NPAEGFIVTANQDLNHLGTAKPINLPMAPYRANRISQLLRQGRQMGVDYFKAMHFDLH SLQAERFMTLLRPLLPDSQQGRLLADWDLSYQADSLGATAFESVYLAMIRVVFGDGGM GRPVIDYVLTETGAFNDYYGNFDEVIMKADSAWFDGRPREELLRRALEEGLAQPVKPY GQTRQIMLSHLLFGGKLPAWLGFDHGPIALPGGRATIPQGQIFKSAGRLTTFSPSLRF ICDMATRQLHSTLAGGPSDRRFGPWYVNGVQDWLAGNYKLLE" misc_feature complement(138027..140144) /locus_tag="Deba_0128" /note="Penicillin amidase; Region: Penicil_amidase; pfam01804" /db_xref="CDD:145130" misc_feature complement(138672..139532) /locus_tag="Deba_0128" /note="Penicillin G acylase (PGA) belongs to a family of beta-lactam acylases that includes cephalosporin acylase (CA) and aculeacin A acylase. PGA and CA are crucial for the production of backbone chemicals like 6-aminopenicillanic acid and 7-...; Region: Ntn_PGA_like; cd03747" /db_xref="CDD:73357" misc_feature complement(order(138807..138809,139002..139004, 139074..139076,139317..139319,139323..139325, 139359..139361,139461..139463,139530..139532)) /locus_tag="Deba_0128" /note="active site" /db_xref="CDD:73357" gene complement(140228..140950) /locus_tag="Deba_0129" /db_xref="GeneID:9492567" CDS complement(140228..140950) /locus_tag="Deba_0129" /note="COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dal:Dalk_3768 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: B8FLV1 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_003806102.1" /db_xref="GI:302341573" /db_xref="GeneID:9492567" /translation="MAKTHWRKEGKVAVLTMDDGPNKQDLDFARRMLACLQEIMADAE VSSLVLTSADAKNFSQGVNVEWLLERQQAGDAQTIKQFMYSMNELFKSLLLLPIPSIA VIGGHAYGNGSILACGCDFRFMRADRGYFCFPEINVGIPFLPSMIKYVSRVMPNAYFN ELLLSGRPVGGVELEKMGVVTKAIADPELLLSQAIAYAATFEKKRGIFAEMKKRMHAE IIQAMETEDVKHIEALFLMVLD" misc_feature complement(140354..140938) /locus_tag="Deba_0129" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(140243..140926) /locus_tag="Deba_0129" /note="enoyl-CoA hydratase; Provisional; Region: PRK06210" /db_xref="CDD:180472" misc_feature complement(order(140537..140539,140546..140551, 140618..140626,140630..140632,140759..140773, 140783..140785,140882..140884)) /locus_tag="Deba_0129" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(140618..140620,140765..140767)) /locus_tag="Deba_0129" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(140360..140362,140408..140410, 140417..140419,140450..140452,140459..140464, 140468..140473,140477..140482,140495..140500, 140504..140512,140516..140518,140534..140545, 140582..140593,140654..140656,140678..140680)) /locus_tag="Deba_0129" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 141150..143972 /locus_tag="Deba_0130" /db_xref="GeneID:9492568" CDS 141150..143972 /locus_tag="Deba_0130" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013767:IPR003661:IPR003594:IPR001789:IPR 005467:IPR000014:IPR000700:IPR011006:IPR009082:IPR002226:I PR001610:IPR004358; KEGG: sfu:Sfum_1337 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; SPTR: B4D2K7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor hybrid histidine kinase" /protein_id="YP_003806103.1" /db_xref="GI:302341574" /db_xref="GeneID:9492568" /translation="MDQSQEALAEQLRLAKEKIAELERRLGQEESLFRQAVDQSPLGF WQCQASGLKDALAALWPGSEEGLRQRLRQEPAALDGLLAACRLAHVNETGLRLFQSPS KKDFARNFKQLLSVHSREALIESLAAMAAGRANMLLETSVHDRMGQKRHISLFWTIPA AHAHDWSRLMITVADQTTRKAAEEALRESERRYRVLFHESPNVMWLVDPADGAIIDVN QAACDFYGYRRQELLTMRVGQINTMGDQSLNAAMSDAVLGGQKRFEFRHRLANGQIRD VEVYAGPITLDHRRLIYSTVYDITANKQALEALKKAENDYRGIYENSQAGIMRSSPDG RLLAANPAMARIFGYPDAQTMVAEVVDTARQLHADPAQRPLLLERLERDGQVRDYLLR ARRRDGSLVWCSVNMRAVRENDGRLKVIEGFVEDVSESVEAKEALARSEALYRAIVDN SLSAIYIFQDDVMVFVNRAFCQMLGAAEPSQALGHPFWKYIHPADRQWVANRARRRAE GEDMPPHYGFRCVRLDGSVIWVDMQAVRIEYQGRPAVLGNLIDITERKLLNEKLAQAQ KMEAVGTLASGIAHDFNNILQTIGSYVQVGAENCAPGPDNDGWLGQIDRAVERAADLI NRLLAFSRNIQPQLRPVNLNDEVTQTLRILERTLPKMIRLETNLDPDLPLINGDAIQL EQVIVNLAANARDAMPDGGRLKIKTAAVELGKEFCATRPGLRPGPHVMLSVRDSGPGM DQAILEQAFDPFFSTKEIGQGVGLGLSQVYGTIKNHHGHIECESAPGQGARFAIYLPT LIDAPLEASPAPRPALEPPAGHNETVLLVDDEKAILEVGRHILDENGYAVLCAESGER ALELLAANPHVALVVLDLGMPGMGGRKCLEEIKKGRPDQRVIVASGYSDDGNRQQALA AGAAAFLPKPYRLPELLRLARQVLDG" misc_feature 141735..142076 /locus_tag="Deba_0130" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 141735..>141869 /locus_tag="Deba_0130" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 142095..142460 /locus_tag="Deba_0130" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 142125..142430 /locus_tag="Deba_0130" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(142164..142166,142176..142178,142194..142196, 142248..142259,142326..142328,142341..142343) /locus_tag="Deba_0130" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(142239..142241,142251..142253,142275..142277, 142284..142289,142362..142364,142368..142370) /locus_tag="Deba_0130" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 142467..143570 /locus_tag="Deba_0130" /note="Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852" /db_xref="CDD:33642" misc_feature 142527..142805 /locus_tag="Deba_0130" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(142545..142547,142557..142559,142575..142577, 142617..142628,142707..142709,142722..142724) /locus_tag="Deba_0130" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(142608..142610,142620..142622,142644..142646, 142653..142658,142743..142745,142749..142751) /locus_tag="Deba_0130" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 142851..143045 /locus_tag="Deba_0130" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(142869..142871,142881..142883,142893..142895, 142902..142904,142914..142916,142923..142925, 142974..142976,142986..142988,142995..142997, 143007..143009,143016..143018,143028..143030) /locus_tag="Deba_0130" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 142887..142889 /locus_tag="Deba_0130" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 143193..143537 /locus_tag="Deba_0130" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(143211..143213,143223..143225,143232..143234, 143346..143348,143352..143354,143358..143360, 143364..143369,143436..143447,143493..143495, 143499..143501,143514..143519,143523..143525) /locus_tag="Deba_0130" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 143223..143225 /locus_tag="Deba_0130" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(143358..143360,143364..143366,143436..143438, 143442..143444) /locus_tag="Deba_0130" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 143598..143951 /locus_tag="Deba_0130" /note="FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784" /db_xref="CDD:31127" misc_feature 143622..143963 /locus_tag="Deba_0130" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(143631..143636,143766..143768,143790..143792, 143850..143852,143907..143909,143916..143921) /locus_tag="Deba_0130" /note="active site" /db_xref="CDD:29071" misc_feature 143766..143768 /locus_tag="Deba_0130" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(143775..143780,143784..143792) /locus_tag="Deba_0130" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 143916..143924 /locus_tag="Deba_0130" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(143969..144727) /locus_tag="Deba_0131" /db_xref="GeneID:9492569" CDS complement(143969..144727) /locus_tag="Deba_0131" /EC_number="2.3.1.51" /note="COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123:IPR004552; KEGG: scl:sce3018 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; PRIAM: 1-acylglycerol-3-phosphate O-acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: A9GFN2 Putative uncharacterized protein; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases" /codon_start=1 /transl_table=11 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase" /protein_id="YP_003806104.1" /db_xref="GI:302341575" /db_xref="GeneID:9492569" /translation="MPLFLKKALQATGFVLSTSVLGLLSMITGLFWPRGARWFARAWG KGLCGMAGFRLRVSGLENLPRDGGGFVVASNHQSAADIAVVLAGLPGDVCWVTKASLL KVPFIGWHLRMVHIPVSRAKAGNTAKLLQAGAQKIRDGAMVVIFPEGTRNRAPEHLLP FRKGAFLLAEAAGRPIVPVAISGSADLMKPGALLPESGVIDLRIGPPVDPTIFAPGDL EGLAQATRRAVQELLGHPPDERFDDQRQVASAAG" misc_feature complement(143972..144694) /locus_tag="Deba_0131" /note="1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204" /db_xref="CDD:30553" misc_feature complement(144035..144595) /locus_tag="Deba_0131" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989" /db_xref="CDD:153251" misc_feature complement(order(144275..144283,144428..144439, 144485..144487,144491..144493,144500..144502)) /locus_tag="Deba_0131" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153251" gene 144996..147233 /locus_tag="Deba_0132" /db_xref="GeneID:9492570" CDS 144996..147233 /locus_tag="Deba_0132" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013767:IPR003661:IPR003594:IPR001789:IPR 005467:IPR000014:IPR000700:IPR011006:IPR009082:IPR004358; KEGG: dal:Dalk_2075 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; SPTR: B8FG89 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003806105.1" /db_xref="GI:302341576" /db_xref="GeneID:9492570" /translation="MQSIKSASVRIWAALGHGWPNEPNQLQDLTWWRRRMVEAILLFA VACGLIAYLPGVYLALREDLWSVAAVDTAAYAALIYIWRSQLIDWRIKAGLLLFVSFA LGAVLLVAVGFYGAGYLWLLGFCVFAGLIWGLRAAALSFALNLAAMALLGYLLHLGLL DWAKPVENALAKWVVIATSFLFLSAVLSASLSVLFKGLQTSLFQAVEARGGLERSNAM LRQEVMARERTAADLQASEERYRELIESISDCILTHDQNGVLLSINSLAASSLGYRPE QLVGRPIADFLPPTYRERFANHYMAQINKVGQAMGVMEIQASDGQTRYLEYRTALVRP PEGAPYVSGLARDITRRVEADRQVRRLQEQLAQARKMEALGTLAGGIAHDFNNILAAI MGYAEICQAAVADGQGQENDQRLELIIKAAERARDLIRQILTFSRPKGKDMRPTRLGP LIEEVLGLFRGGLPASIALKADLAAGQAVVVCDPTQIQQLLMNLCANAMHAMEQRGGE IRVGLEVVDLSAGQDGLTPGRYARLSVSDDGDGIPKAIADRVFDPFFTTKAEGKGTGM GLAVAHGIVAAHNGRIGFESAPGAGATFRVLLPLAAEGPTVEADRPARPADETPLGGS ERVLFVDDEKPLVDIALSALGRLGYQVRGFSDPALALAEFQRDPTAFDVVISDQTMPG MSGLQLIQALRDQRPGLPAILCTGYGDIDAAEAASQARPDILLQKPLGRNQLARALRQ ALAQG" misc_feature 145695..146810 /locus_tag="Deba_0132" /note="Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852" /db_xref="CDD:33642" misc_feature 145707..145880 /locus_tag="Deba_0132" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 146106..146306 /locus_tag="Deba_0132" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(146124..146126,146136..146138,146148..146150, 146157..146159,146169..146171,146178..146180, 146235..146237,146247..146249,146256..146258, 146268..146270,146277..146279,146289..146291) /locus_tag="Deba_0132" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 146142..146144 /locus_tag="Deba_0132" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 146454..146789 /locus_tag="Deba_0132" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(146472..146474,146484..146486,146493..146495, 146598..146600,146604..146606,146610..146612, 146616..146621,146688..146699,146745..146747, 146751..146753,146766..146771,146775..146777) /locus_tag="Deba_0132" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 146484..146486 /locus_tag="Deba_0132" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(146610..146612,146616..146618,146688..146690, 146694..146696) /locus_tag="Deba_0132" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 146877..147179 /locus_tag="Deba_0132" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(146886..146891,147024..147026,147048..147050, 147108..147110,147165..147167,147174..147179) /locus_tag="Deba_0132" /note="active site" /db_xref="CDD:29071" misc_feature 147024..147026 /locus_tag="Deba_0132" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(147033..147038,147042..147050) /locus_tag="Deba_0132" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 147174..147179 /locus_tag="Deba_0132" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 147338..148471 /locus_tag="Deba_0133" /db_xref="GeneID:9492571" CDS 147338..148471 /locus_tag="Deba_0133" /EC_number="1.4.1.1" /note="COGs: COG0686 Alanine dehydrogenase; InterProIPR007886:IPR007698:IPR016040:IPR008143:IPR 008141; KEGG: dvu:DVU0571 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; PRIAM: Alanine dehydrogenase; SPTR: Q72EK7 Alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase" /codon_start=1 /transl_table=11 /product="alanine dehydrogenase" /protein_id="YP_003806106.1" /db_xref="GI:302341577" /db_xref="GeneID:9492571" /translation="MIVGVLKEIKKQENRVAMTPAGVEVLAANGHQVLAQAAAGAGSG VADEAYAKAGAEIVQTPEEIHARAEMIMHVKEPQVAELPLIRPGQIIFTYLHLAADEA LTRALMKSQAVCIAYETIQTACGALPLLTPMSEVAGRMSIQQGAKYLEMTHGGHGVLL GSVPGVDPGEVLIIGGGVVGANAAKMACGLGAKVYVLDTNLERLRHLSEVMPANCFPL MATPALIRKLIREADVVVGAVLVTGAKAPKLITRDMLPTMKKGAVLVDVAIDQGGCFE TSRPTSHDAPTYVVDGVVHYCVTNMPGALPRTSTLALTNATLPYALAIANLGWREAMR QRPDIALGANVVHGRVTCRGVAEAFGLAFTPLEELLDRPGVAA" misc_feature 147338..148447 /locus_tag="Deba_0133" /note="Alanine dehydrogenase [Amino acid transport and metabolism]; Region: Ald; COG0686" /db_xref="CDD:31030" misc_feature 147347..147748 /locus_tag="Deba_0133" /note="Alanine dehydrogenase/PNT, N-terminal domain; Region: AlaDh_PNT_N; pfam05222" /db_xref="CDD:191234" misc_feature <147887..>148141 /locus_tag="Deba_0133" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(148566..149009) /locus_tag="Deba_0134" /db_xref="GeneID:9492572" CDS complement(148566..149009) /locus_tag="Deba_0134" /note="InterPro IPR006016:IPR006015:IPR014729; KEGG: dma:DMR_39250 universal stress protein; PFAM: UspA domain protein; SPTR: C4XNB3 Putative universal stress protein; PFAM: Universal stress protein family" /codon_start=1 /transl_table=11 /product="UspA domain protein" /protein_id="YP_003806107.1" /db_xref="GI:302341578" /db_xref="GeneID:9492572" /translation="MKPAQPFSHIMVCTDFSPGAARAVAVGAQQARLDGARLSLVHVV APGAPVLPQMAAKSARVLDNHEVAHLCHQHMENCYGPDLSGLPVKMVLRRGHPVVEIV AQLEQDPADLLVVGSQGLSGMGLILFGSVAERLARRAACATLIAR" misc_feature complement(148572..148985) /locus_tag="Deba_0134" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(148614..148625,148653..148658, 148662..148667,148881..148883,148965..148973)) /locus_tag="Deba_0134" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(149006..149581) /locus_tag="Deba_0135" /db_xref="GeneID:9492573" CDS complement(149006..149581) /locus_tag="Deba_0135" /note="InterPro IPR001647:IPR011075:IPR009057:IPR015893; KEGG: nca:Noca_4300 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A1SPR2 Transcriptional regulator; PFAM: YsiA-like protein, C-terminal region" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003806108.1" /db_xref="GI:302341579" /db_xref="GeneID:9492573" /translation="MADNDIRLKIIEAASEIYERKGRQATVEEIAAAAGVSVPVTTHH LRKPSDIMLVIMEHLQAKFAEGVSANTAADATSEQKLRQAVAQFYTVVDQQRAKVLLV YRESRTLDAAGRKRIMQLELECVEVFRRILEEGVAQGAFRTMDTGLVAYDIVIMGHMW SLKSWHFKKIGRRFDDFLARQQEAVVAMVKR" misc_feature complement(<149324..149569) /locus_tag="Deba_0135" /note="transcriptional repressor BetI; Region: betaine_BetI; TIGR03384" /db_xref="CDD:132427" gene 149802..150314 /locus_tag="Deba_0136" /db_xref="GeneID:9492574" CDS 149802..150314 /locus_tag="Deba_0136" /note="KEGG: dal:Dalk_2308 cache, type 2 domain protein; SPTR: B8FIL1 Cache, type 2 domain protein" /codon_start=1 /transl_table=11 /product="cache, type 2 domain protein" /protein_id="YP_003806109.1" /db_xref="GI:302341580" /db_xref="GeneID:9492574" /translation="MKKIFATLALLCLSAGLATAQEQATIQEVYEKVQAAAAVLEQLG PEGLAAFNDPKGEFVWKDSYVFVIDCQKGEVVAHPNAKIIGDKLAQSKDKPGDIRPPK ALGLEMCRAAENPNGIWIDYYWEKLGSDKPQRKISFCIAVAGQPFTAVAGIYDQTTSL DELNKGAKAK" gene 150489..152819 /locus_tag="Deba_0137" /db_xref="GeneID:9492575" CDS 150489..152819 /locus_tag="Deba_0137" /note="COGs: COG2183 Transcriptional accessory protein; InterProIPR018974:IPR003029:IPR016027:IPR006641:IPR 012340; KEGG: sfu:Sfum_1838 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; SPTR: A0LJC1 RNA binding S1 domain protein; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain" /codon_start=1 /transl_table=11 /product="Tex-like protein" /protein_id="YP_003806110.1" /db_xref="GI:302341581" /db_xref="GeneID:9492575" /translation="MTTDNAVKVAQELGLRPEQVLAAAALLAEGATVPFIARYRKERT GELDEEQIRTVRDRLEQLAELDARRAAVLKSLEERQLLTPELHAQILAAPTMAVLEDV YLPFRPKRRTRAMVARERGLEPLALLLLEQGPATDPLAAAAAFVDAEKELPDAEAALS GARDIMAEIINEDPAVRAEMRQLFETKGVMRAAVIPGKEEAGQKYRDYFDWSEPLASA PGHRVLAVRRGEKEDILSLRVAPPEDLAIAVLERRYVTGGPCAEQVRLAAQDCYKRLL GPAMETEARLSSKKRADDEAVRVFAENLRTLLMAPPLGQKAVLAIDPGFRTGCKVVCL DRQGNLLHHDVIFILSDKQREDAVAKVTALIEKYGSEAVAIGNGTASRETESLLRGAK LPGDPPVVMVNESGASVYSASKLARQEFPELDVTVRGAASIGRRLMDPLAELVKIDPK SIGVGQYQHDVDQKSLKQSLEDVMLSCVNAVGVELNTASPQLLGCVSGLGPSLAQNIV EHRAANGPFASRQDLLAVPRLGPKAFEQAAGFLRIRGGQNPLDASAVHPEAYPVVEAM ARDLECSVEDLIKQAELRRKIELGRYVDDRVGLPTLQDIIAELEKPGRDPRQGFEMFS FAEGVEKLEDLKPGMSLPGIVTNVTNFGAFVDVGVHQDGLVHISELTDGFVADPRQVV KVQQQVRVRVLEVDLERGRISLSMRSAPAPAARPKAPAAENAERRPRDERRNQAKGGK RQQKERRDQKPAAPEKPKDQPFNNPFAAALGSLKLD" misc_feature 150489..152810 /locus_tag="Deba_0137" /note="Transcriptional accessory protein [Transcription]; Region: Tex; COG2183" /db_xref="CDD:32366" misc_feature 150513..151094 /locus_tag="Deba_0137" /note="Tex-like protein N-terminal domain; Region: Tex_N; pfam09371" /db_xref="CDD:150144" misc_feature 151434..151721 /locus_tag="Deba_0137" /note="Uncharacterised protein family (UPF0081); Region: UPF0081; cl00525" /db_xref="CDD:186059" misc_feature 152400..152603 /locus_tag="Deba_0137" /note="S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin...; Region: S1_Tex; cd05685" /db_xref="CDD:88440" misc_feature order(152424..152426,152448..152450,152478..152480, 152484..152486) /locus_tag="Deba_0137" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88440" gene 153060..154805 /locus_tag="Deba_0138" /db_xref="GeneID:9492576" CDS 153060..154805 /locus_tag="Deba_0138" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dol:Dole_0337 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZSY3 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806111.1" /db_xref="GI:302341582" /db_xref="GeneID:9492576" /translation="MAVKPWHQSSRWPEGVPFDIDGYNKPVFAMLDDAARNYPNATYT IFQGGMRTFAQVKDTADRLANFLASRGIKHEDRVAIFLPNIPQYPEVFFGSSKAGAAC VTCNPLYTIEELNYQLKDSGAKAVFCMDHPQFYKTTCEAIKGTDVQTVVICNIKSYLP KIKGFLGGLLGKLPKAESHDPSHFMYDDIIASSRPEPPKVNFDAEKDLAVILYTGGTT GVPKGAELKHTNFYSNVVALNKWIRVPNRPGERPGPMESGGAHTFLGVLPWYHSFGLT VCMLGSCYSANRLVCIPDPKAGNPPFTEVLKAIQDYKVTMTVAVPTIYTAFVNHALIK KFDLSSMAACSSGAAPLPPEVLKRFEEITGGVIFEGYGLTETTPVLTTNPTFADKRKI GSVGMPLPGTDIKIVDLDTGLVELPHGEDGEIAAAGPQIMRGYWQRPDANAEVFREIE GKRFFLTGDIGHIDEDGFVVITDRKKDLILVGGFNAYPKEIEEVLYTHPKVAQAAVVG VPDPSSGEAVKAFIQLKPGVTATEKEILDFCKDHLAGYKRPREIEFRDELPTSVVGKI LRRVLRSEELEKRKK" misc_feature 153069..154781 /locus_tag="Deba_0138" /note="Long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07059" /db_xref="CDD:180816" misc_feature 153213..154775 /locus_tag="Deba_0138" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 154994..156643 /locus_tag="Deba_0139" /db_xref="GeneID:9492577" CDS 154994..156643 /locus_tag="Deba_0139" /note="COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027:IPR004099:IPR001763:IPR016156; KEGG: hor:Hore_02400 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: rhodanese domain protein; SPTR: B8D132 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; rhodanese-like domain" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulfide oxidoreductase" /protein_id="YP_003806112.1" /db_xref="GI:302341583" /db_xref="GeneID:9492577" /translation="MKLVIIGGVAGGATAAARARRLDEKAQIVIFERGEYVSFANCGL PYYVGQVIKERAELLVSTPETFKGKYNIDVRVQTDVLAIDRQAKRVRVRDLQTGQSFD EPYDKLILSPGAEPLRPPLPGVDLPGVFSLRSIPDSDRIKAVVDAGQAKTAVVIGGGF IGLEMADNLVERGLKVTLVEALDQLMPPLDREMAALAHQNARAKGVDLRLSTKITGFA QAQGGGLTVDTEGGGQITCDMAILSVGVRPENALAKAAGLELGPRGHILVNNALQTND PDIYAVGDAVQIWDYVTGLPVAIALAGPANRQGRIAADNAMGRLSVYRGSLGTAVVKL FGQTIASTGPSQKFLAQNNVAHLVSYSHSANHATYYPGAETMLVKLIFAPSSGRVLGG QIVGGEGVDKRIDVLATAIRAGMSVFDLEELDLAYAPPFGSARDPINVAGMVAANIMR GDVKAVLPPAVAAMDPERDVLIDLRFKEELDEAATIPGSLHIPLPMLRAALPGLDKSK RYILYCAIGLRGYLGYRIMSQSGFEAVNLGGGYGLYTPWMS" misc_feature 155057..156319 /locus_tag="Deba_0139" /note="CoA-disulfide reductase; Region: CoA_CoA_reduc; TIGR03385" /db_xref="CDD:163244" misc_feature 155450..155656 /locus_tag="Deba_0139" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature <156089..156295 /locus_tag="Deba_0139" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" misc_feature 156359..156625 /locus_tag="Deba_0139" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125" /db_xref="CDD:193666" misc_feature 156533..156535 /locus_tag="Deba_0139" /note="active site residue [active]" /db_xref="CDD:29073" gene complement(156669..157850) /locus_tag="Deba_0140" /db_xref="GeneID:9492578" CDS complement(156669..157850) /locus_tag="Deba_0140" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: sco:SCO0391 transferase; PFAM: glycosyl transferase group 1; SPTR: Q8KN06 Putative glycosyl transferase; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806113.1" /db_xref="GI:302341584" /db_xref="GeneID:9492578" /translation="MLRVLHLADRLSAWGGADRHMIAVLERLQGRARTLLAVGRDDGS LPPAERAMIGPIVRLKGLDRGGLSPRGQGAAVARLERLARDFRPELIHIHNVVDPALL ARAAQLAPSVITVQDHRHFCPGRGKMDAHGRPCGQVMGPNCLACFDDREYGQRLLELT QRRLAALAAMGRVLVLSGYMAAELERAGLPQGLATVLPPFVQGVAPPAETTPAAHHLL ACRLVGRKGVRVALAAAEMLSGPWPLVVAGTGPLEAEVAAGAARSKGRIIFAGWADRP GMSRLLAGARGLWLPSLWAEPFGIVGLEALHLGVPVLAARVGGVADWLDDGLAGRLLP PGDAQALADAANALDQDEAARQAMGRHGMAVSRSRFDPQALMERLLQTYRQAAGQAEV G" misc_feature complement(156684..157850) /locus_tag="Deba_0140" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature complement(156699..157844) /locus_tag="Deba_0140" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" gene complement(157858..158592) /locus_tag="Deba_0141" /db_xref="GeneID:9492579" CDS complement(157858..158592) /locus_tag="Deba_0141" /note="InterPro IPR005358; KEGG: dvm:DvMF_2337 protein of unknown function UPF0153; PFAM: protein of unknown function UPF0153; SPTR: B8DII0 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806114.1" /db_xref="GI:302341585" /db_xref="GeneID:9492579" /translation="MIETLEEIGGRPLAPGQGFAFRCGPDLACFGSCCADKRLPLWPY DLLRLRRALARPSQDILAELVELETDPRSGWPALRLRLNADGRCPFSGPGGGCQVYAH RPLCCRIYPLARAVAPAIGGGQPRQVFIVQDAPACLGLGQPRALDQGQWLADQGMGPY LAANNRLLGLLMHPRRPARLALTPAQTHAYLAALYNLDVFRQQVRDPAFAKRAGLEKA RVKKALRADESLLELGQDWLSQVLFG" misc_feature complement(158251..158502) /locus_tag="Deba_0141" /note="Flagellin N-methylase; Region: FliB; cl00497" /db_xref="CDD:186037" gene complement(158589..159170) /locus_tag="Deba_0142" /db_xref="GeneID:9492580" CDS complement(158589..159170) /locus_tag="Deba_0142" /note="COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR003382:IPR004507; KEGG: etr:ETAE_2408 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; SPTR: D0ZB09 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases" /codon_start=1 /transl_table=11 /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase" /protein_id="YP_003806115.1" /db_xref="GI:302341586" /db_xref="GeneID:9492580" /translation="MENFGQKPVLVGIAGASGAVYGIELLRALRAHGAPTAVVISHAA RRTIELETKYDAADVAKMADQAYDVDDVAAPPASGSHRLAGMVVAPCSMRSLSAIAHS QADNLLTRAADVQLKERRPLVLLVRETPLHAGHLELMLRCARLGAVIMPPVPAFYHAP RTAADIVAQTVGRVLDVLGLEHDMTPRWRGPAS" misc_feature complement(158607..159152) /locus_tag="Deba_0142" /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional; Region: PRK06029" /db_xref="CDD:180355" misc_feature complement(158790..159152) /locus_tag="Deba_0142" /note="Flavoprotein; Region: Flavoprotein; cl08021" /db_xref="CDD:195652" gene complement(159283..159855) /locus_tag="Deba_0143" /db_xref="GeneID:9492581" CDS complement(159283..159855) /locus_tag="Deba_0143" /EC_number="4.1.1.19" /note="COGs: COG1945 conserved hypothetical protein; InterPro IPR002724:IPR016104; KEGG: aba:Acid345_1944 pyruvoyl-dependent arginine decarboxylase; PFAM: Pyruvoyl-dependent arginine decarboxylase; PRIAM: Arginine decarboxylase; SPTR: Q1IQA5 Arginine decarboxylase; TIGRFAM: arginine decarboxylase, pyruvoyl-dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); TIGRFAM: arginine decarboxylase, pyruvoyl-dependent" /codon_start=1 /transl_table=11 /product="arginine decarboxylase, pyruvoyl-dependent" /protein_id="YP_003806116.1" /db_xref="GI:302341587" /db_xref="GeneID:9492581" /translation="MLVPKYIYLTKGKGEHKEKLASFEAALRDAGIAAQNIVEVSSIY PPHAQLVSRPKGEKLLVPGQILFCVLARNQTNEPHRLISSSIGLAMPADHSVHGYLSE HKGFGENATQSGDYAEDLAAEMLASTLGIDFNVDQSWDEKKQAFLMSGKIIKTSNITQ TGVGPKDGKWLTTVAAAVMITQWVAPPAIK" misc_feature complement(159316..159852) /locus_tag="Deba_0143" /note="Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); Region: PvlArgDC; cl00849" /db_xref="CDD:186221" gene complement(160003..160323) /locus_tag="Deba_0144" /db_xref="GeneID:9492582" CDS complement(160003..160323) /locus_tag="Deba_0144" /note="KEGG: bpm:BURPS1710b_3218 AraC family transcriptional regulator; SPTR: Q3JPB4 Transcriptional regulator, AraC family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806117.1" /db_xref="GI:302341588" /db_xref="GeneID:9492582" /translation="MSKGIQIIDPEERFTINLEGAAFVVRRLDSATAMALERRHRGGA DKQAVADDALDYIIQDWQGVTSSLGDAPAPCTRENKLRLPTAIKLRLMAAAQLNRAED NSAD" gene complement(160320..160733) /locus_tag="Deba_0145" /db_xref="GeneID:9492583" CDS complement(160320..160733) /locus_tag="Deba_0145" /note="KEGG: mno:Mnod_6660 hypothetical protein; SPTR: B8IRN9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806118.1" /db_xref="GI:302341589" /db_xref="GeneID:9492583" /translation="MLCRGPSLAAGRRARHHWPMSADDRHIALVSPDERWPLAIDGAT FFYRRLSLAALAAIERQQALIVRDQDGRPRQVIPPAALETAICRHALLDWRGVVDAAG RPAACAPGLVDLLPAGARARLAAAAMDIRIPRSQS" gene 160794..161732 /locus_tag="Deba_0146" /db_xref="GeneID:9492584" CDS 160794..161732 /locus_tag="Deba_0146" /note="COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: rmr:Rmar_1316 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D0MI98 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_003806119.1" /db_xref="GI:302341590" /db_xref="GeneID:9492584" /translation="MKILLTGGAGFIGSHVAEAFLGQGHAVTIVDDLSSGRPENAPAG AELAVMDIASPQAAELMASGGFDVLCHHAAQISVPFSVEDPQADARVNILGLLNLLEA GRRGGLRRVIFISSGGAVYGEIPDAPADEQRPALPLSPYAVSKLCGETYLAYYAANFG LEALTLRYANVYGPRQTPHGEAGVVAIFMNAIAAGRPPAIYRHPETPRGMERDYVYVA DCAQANVLALSAPPGVYNIATGLATTTLDLWLAVRRAAQSDLGHSFGPARAGDLRRSV LDAAKAASILGWRPERDLAAGLAETWAWRRALEAGA" misc_feature 160794..161726 /locus_tag="Deba_0146" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature 160797..161705 /locus_tag="Deba_0146" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(160812..160814,160818..160823,160827..160829, 160884..160892,161007..161015,161133..161141, 161214..161216,161226..161228,161295..161306) /locus_tag="Deba_0146" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(161067..161069,161139..161141,161214..161216, 161226..161228) /locus_tag="Deba_0146" /note="active site" /db_xref="CDD:187535" gene 161729..162793 /locus_tag="Deba_0147" /db_xref="GeneID:9492585" CDS 161729..162793 /locus_tag="Deba_0147" /EC_number="3.5.99.7" /note="COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; InterPro IPR001926; KEGG: dal:Dalk_2543 1-aminocyclopropane-1-carboxylate deaminase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; PRIAM: 1-aminocyclopropane-1-carboxylate deaminase; SPTR: B8FFH6 1-aminocyclopropane-1-carboxylate deaminase; PFAM: pyridoxal-phosphate dependent enzyme" /codon_start=1 /transl_table=11 /product="1-aminocyclopropane-1-carboxylate deaminase" /protein_id="YP_003806120.1" /db_xref="GI:302341591" /db_xref="GeneID:9492585" /translation="MNHPALFDAFPALAQRLARAPLLEGPTPLQPLAQASQSLGVEVW VKRDDLSSTVYGGNKPRKLEFILGRALAEGRRELVTMGAMGTNHGLATTIHGQRLGLT TSLELFPQPLTSVVLRNIKLFQHFGARINLSPTMERAFLRFRYWQRLRRPGACFIPAG GSSPLGAVGYVSAGLELAGQLAAGQGPRPQAVFVAAGTLGSQAGLRLGLLLAGQDIPV IGVAVVPLAAANAKAALNLARRTLALLRAADPSVPELTLAAEDFVIDPGQLGPGYGQP TPAALAAMDLLSRQEGLSLEPTYTAKAFAGLCAWAQERPGQGPLLFWHTYNSARLDHL ADQVDPAGLPEALRKYFLAQ" misc_feature 161798..162703 /locus_tag="Deba_0147" /note="D-cysteine desulfhydrase; Validated; Region: PRK03910" /db_xref="CDD:179673" misc_feature 161807..162703 /locus_tag="Deba_0147" /note="Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD)...; Region: Trp-synth-beta_II; cl00342" /db_xref="CDD:197407" misc_feature order(161900..161905,161987..161989,162317..162331, 162620..162622,162701..162703) /locus_tag="Deba_0147" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:107202" misc_feature 161903..161905 /locus_tag="Deba_0147" /note="catalytic residue [active]" /db_xref="CDD:107202" gene 162908..163735 /locus_tag="Deba_0148" /db_xref="GeneID:9492586" CDS 162908..163735 /locus_tag="Deba_0148" /note="COGs: COG3264 Small-conductance mechanosensitive channel; InterProIPR008910:IPR006685:IPR011066:IPR010920:IPR 011014; KEGG: pca:Pcar_2469 transport protein; PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; SPTR: Q3A1P9 Putative transport protein; PFAM: Mechanosensitive ion channel; Conserved TM helix" /codon_start=1 /transl_table=11 /product="MscS Mechanosensitive ion channel" /protein_id="YP_003806121.1" /db_xref="GI:302341592" /db_xref="GeneID:9492586" /translation="MEQALTEIKTWLALYGLNLLGAAVILALGLAAAGYLSRLVRALM QKAKLDQSLVGFVASLTRVALIAVVIIAALSQAGFQTASLIAVLGGAVFAVGLALQGN LSSLASGVLILVFRPFRVGEVIECGAVIGAVERIDILHTTIKCADGRTVVMPNIKLTS EAVINYSSRPIMRADVTVGVGYGDDIARAKAIVGEVVAGYDKALAEPAPQILVSELAD SSVNLAVRVHVGKDDYWQAKADLLELIKLRFDREGVTIPYPQREVHLRGGQASAAVN" misc_feature 163130..163678 /locus_tag="Deba_0148" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" gene complement(163732..165204) /locus_tag="Deba_0149" /db_xref="GeneID:9492587" CDS complement(163732..165204) /locus_tag="Deba_0149" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: chy:CHY_0845 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q3ADT8 Long-chain-fatty-acid--CoA ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806122.1" /db_xref="GI:302341593" /db_xref="GeneID:9492587" /translation="MATPPWLTHYGSLVPHNLGYPRQDVFALLRGAANQQPDKPAISF MGAKITYAQLMDQIERLAGALARRGAHKGSRVIIMTPNSPQMAVAFFALLRMGAVPVL APLIDDADELIARARQCGAMGLIVQNCLPESLSGLRNKLGLDLIVCAGQLDGLGPSVR LAQAFRRRLRPSAPDCRVVREAGVERFGRLLKENAQPPQRPVLSLEAPAVIVHTRGAG GQPRAVVLSHRALAANLCQAAAWLRLNPGDGVLVLGPLIRGLGLCLGLGAALVKGGCL ILPSHEGPRAALSAIARRKPRFVAAEPGQLAALADLPEARKLPKGHLAAVICDGPAPA ADFAERVGELTGAALMESYGLAEAGAMVAATPPGGQRRSGALAPLMDVEMIIAGPDGQ AVAPGQAGEICLRGPGLMSGYQTGGRPDDQILRDGWLPTGDLGRLDQDGLLSVLGRTQ DFAAQPRPLPADDRPAPKASRVHLRLCPAPERARAASAEG" misc_feature complement(<163849..165132) /locus_tag="Deba_0149" /note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: CaiC; COG0318" /db_xref="CDD:30666" gene 165607..167247 /locus_tag="Deba_0150" /db_xref="GeneID:9492588" CDS 165607..167247 /locus_tag="Deba_0150" /note="COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterProIPR004137:IPR011254:IPR010048:IPR016100:IPR 016099; KEGG: dma:DMR_35370 hydroxylamine reductase; PFAM: Prismane; SPTR: C4XL87 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase" /codon_start=1 /transl_table=11 /product="hybrid cluster protein" /protein_id="YP_003806123.1" /db_xref="GI:302341594" /db_xref="GeneID:9492588" /translation="MDQMFCYQCEQTAKGSGCTVGGVCGKNPQVAALQDMLTYAVIGL GQVAHAARQKGVIDPEVDRFVCAGLFATLTNVDFDPDRFVVWIGQAVALRKALAQKAG VGPLPGPASFEPAADVAGLEAQSKIWGFAPLEGQDPDARSLIHLTIFGLRGVAAYADH AAILGQEDPELYAQIHAALAATQDTTLGAAELTALALKVGEINLRAMELLDAGNTGRF GHPVPTSVPLGHKAGKAILVSGHDLEDLAQLLEQSAGKGIFVYTHGEMLPTHGYPELK KHPHFYGHYGTAWQNQGKEFPEFPGAILMTTNCIQRPKGDTGEKIFTTGLVGWPGVPH IAEGPGGKKDFGPVIEKALALPGFAADEDKGSVMVGFARNAVLGVADKIIEAVKSGAI KHFFLVAGCDGAKPGRNYYTEFVEKTPADTVVLTLACGKFRFFDKNLGDIGGIPRLLD VGQCNDAYSAIQIAVALAGAFNCGVNDLPLSMVLSWYEQKACAILLTLLHLGIKGIRL GPSLPAFISPNVLKVLVDNFDIKPISASADEDLKAILG" misc_feature 165616..167244 /locus_tag="Deba_0150" /note="hybrid cluster protein; Provisional; Region: PRK05290" /db_xref="CDD:179995" misc_feature 165616..>165858 /locus_tag="Deba_0150" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature order(165721..165723,165727..165732,165739..165744) /locus_tag="Deba_0150" /note="ACS interaction site; other site" /db_xref="CDD:73219" misc_feature order(165730..165732,165739..165741,165751..165753, 165760..165762) /locus_tag="Deba_0150" /note="CODH interaction site; other site" /db_xref="CDD:73219" misc_feature 166009..167241 /locus_tag="Deba_0150" /note="Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a...; Region: HCP; cd01914" /db_xref="CDD:73287" misc_feature order(166327..166329,166399..166401,166531..166533, 166807..166809,166891..166893,166966..166968, 167068..167070) /locus_tag="Deba_0150" /note="hybrid metal cluster; other site" /db_xref="CDD:73287" gene 167388..167798 /locus_tag="Deba_0151" /db_xref="GeneID:9492589" CDS 167388..167798 /locus_tag="Deba_0151" /note="COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: dvl:Dvul_2351 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: Q72EH7 Phenylacetic acid degradation protein PaaI; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003806124.1" /db_xref="GI:302341595" /db_xref="GeneID:9492589" /translation="MEEKSLQQRLDHARHTVGGDPWAKFIDIRIDEVEERYAKVSILP EARHLNALGMVHGAVFYALADQAYAVASNTAPSPAVLIEANLNILNAGKPGVRLCAEA RARDVKRKLTTWDVEIKDPDGKLMAVSRGITYSL" misc_feature 167460..167789 /locus_tag="Deba_0151" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(167550..167552,167628..167630,167649..167660) /locus_tag="Deba_0151" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(167553..167555,167559..167561,167568..167570, 167631..167645,167649..167651) /locus_tag="Deba_0151" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(167556..167558,167580..167585,167592..167597, 167628..167630) /locus_tag="Deba_0151" /note="PHB binding site; other site" /db_xref="CDD:48038" gene 167795..168724 /locus_tag="Deba_0152" /db_xref="GeneID:9492590" CDS 167795..168724 /locus_tag="Deba_0152" /note="InterPro IPR002657; KEGG: sfu:Sfum_1523 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: A0LIF9 Bile acid:sodium symporter" /codon_start=1 /transl_table=11 /product="Bile acid:sodium symporter" /protein_id="YP_003806125.1" /db_xref="GI:302341596" /db_xref="GeneID:9492590" /translation="MSAGPRPADWALLLAAMGGLAAGWLWPRAGIIIAPYLAWCMAGV LFLAFLRLDFAALTRVDRASLGGLATWTTLKLILLPLAAWAVTAILAPRWALAALVLS GVSAGVTSPFFAGLLGADMAGALRLVMASSLLAPLSLPALVELLAGRHMSASLTDMAA MLAAVILSPLLLARVCRLLWPRAALAVAARGLPLNLAIIFCANAGVMAKYGQYLRGRP LELLAALGLACLLALAYAGIGLGLGRLSNGRLDGLTGAAGLAFCNNILALVFAERFFG PLEALLCAAYTAPYFLVLIPLRLAAGRAGRSER" gene 168721..169818 /locus_tag="Deba_0153" /db_xref="GeneID:9492591" CDS 168721..169818 /locus_tag="Deba_0153" /note="COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: gme:Gmet_0034 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Q39ZP0 Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_003806126.1" /db_xref="GI:302341597" /db_xref="GeneID:9492591" /translation="MSWRFLLFISTFFAIYGGANALIFRWLRPVLPAAGPWRLGLMLW FGLMVLSPVISRNLESWGWLRPAAVFDVVGYYWMGLVFVGIFLLGLAKLAGWLLPIGP KTAVWLGLLATAAAFAYGYYEAANPGLSFVTVEAKLPPGVKRIRIAQIADQHLGYTIN SDRLANVCRLVASQKPDIVVSTGDLLENTMADPAAVLEPLRRLDPPLGKWAVLGNHEF YMDLNAALEYHRMAGFELLRGQGRALPGALSLAGVDDRPQSDGPAERAMLQALPQDMP VVFLKHRPDVTDESRGRFDLMLCGHTHGGQMFPFGLIVRRVFPMLEGLHQLPGGEKVF VSRGSGLWGPPLRILAPPEVVIIDLVPAGAK" misc_feature 169153..169797 /locus_tag="Deba_0153" /note="Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain; Region: MPP_YkuE_C; cd07385" /db_xref="CDD:163628" misc_feature 169153..169629 /locus_tag="Deba_0153" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature order(169174..169176,169180..169182,169270..169272, 169363..169368,169564..169566,169621..169623, 169627..169629) /locus_tag="Deba_0153" /note="putative active site [active]" /db_xref="CDD:163628" misc_feature order(169174..169176,169180..169182,169270..169272, 169363..169365,169564..169566,169621..169623, 169627..169629) /locus_tag="Deba_0153" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163628" gene complement(169916..170248) /locus_tag="Deba_0154" /db_xref="GeneID:9492592" CDS complement(169916..170248) /locus_tag="Deba_0154" /note="COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645:IPR003658; KEGG: swo:Swol_1795 anti-anti-sigma regulatory factor, SpoIIAA; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q0AW11 Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor" /codon_start=1 /transl_table=11 /product="anti-sigma-factor antagonist" /protein_id="YP_003806127.1" /db_xref="GI:302341598" /db_xref="GeneID:9492592" /translation="MEVTSVREGGALICKLVGRLDASSSPMVDQAMQGQLTEDDKLLL CDMSELEYISSAGLRILLMRAKEMAARKGKLALFAPRPEVKQVFEIAGFTKIIPLFAT KEEALKAC" misc_feature complement(169946..170242) /locus_tag="Deba_0154" /note="Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043" /db_xref="CDD:132914" misc_feature complement(order(169970..169972,169976..169981, 169991..169993,170057..170062,170069..170077, 170081..170089,170093..170095,170162..170164, 170180..170188,170192..170194)) /locus_tag="Deba_0154" /note="anti sigma factor interaction site; other site" /db_xref="CDD:132914" misc_feature complement(170084..170086) /locus_tag="Deba_0154" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:132914" gene 170479..172386 /locus_tag="Deba_0155" /db_xref="GeneID:9492593" CDS 170479..172386 /locus_tag="Deba_0155" /note="COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702:IPR000182:IPR016181; KEGG: sfu:Sfum_0746 acetyl-CoA hydrolase/transferase; PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; SPTR: A0LG92 Acetyl-CoA hydrolase/transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003806128.1" /db_xref="GI:302341599" /db_xref="GeneID:9492593" /translation="MRSHKNTYWPDDYQYKKYNVTQAISRIRPGQRVFIGSGAGEPQA LVRELSKSSSHFTDVEIVRLLGLESSPLAPIAMRTSGHSLNVRYFYLGSAKTQTLAAS KRFFTPINLSAVPRLFKTRQLPIHVALIQCSEPDDFGWMSLGVSVDVTLAAVQAADMV IAQVNPKMPRVLGHGFVHVNDVDIIVEREEELIYLEQSPNFESANLIAKHVAKLIDDG STLQMSLGATPQAIWLGVSSKNDLGVHTQFLTDGVMKLFAQGVINNKNKGFNNDRMVA SAALGSRNLYEFINDNPAVEFHPSDYVNDPAIIARHNKMVSVNVAMAMDLTGQAAADA LPYNHYSGVNGTMDFIRGAQNSPGGKSILMLPSTTLDGQASRITPSLDGIPVVVPRAE VQYVVTEYGVVNLFGKTLQERAIALISVAHPDFRDELYEKAKDIGLLAPERTFADTIR SVYPLKLEEKRIIGGQEIFFRPARPTDERSIQEHFYNLDHRDVVRRFMAEKSSFLRED LAGMYQVDYIHDMTMVASTGELGFEKVIAVGGYFLNPATNVAEVAYSVSKEWQGKGIS SVIQEKLAVAAREHGIAGFEAFTFPHNKSMIALFEKLPFKVTSRLADDTLILVCRFDE PKPQKEEQTRA" misc_feature 170503..171807 /locus_tag="Deba_0155" /note="Acetyl-CoA hydrolase [Energy production and conversion]; Region: ACH1; COG0427" /db_xref="CDD:30776" misc_feature 170533..171048 /locus_tag="Deba_0155" /note="Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550" /db_xref="CDD:111448" misc_feature 172075..172296 /locus_tag="Deba_0155" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(172456..172962) /locus_tag="Deba_0156" /db_xref="GeneID:9492594" CDS complement(172456..172962) /locus_tag="Deba_0156" /note="COGs: COG4564 Signal transduction histidine kinase; InterPro IPR013163; KEGG: dma:DMR_14010 methyl-accepting chemotaxis protein; PFAM: Cache type 2 domain protein; SPTR: C4XMV1 methyl-accepting chemotaxis protein; PFAM: Cache domain" /codon_start=1 /transl_table=11 /product="cache sensor protein" /protein_id="YP_003806129.1" /db_xref="GI:302341600" /db_xref="GeneID:9492594" /translation="MFGAGLVAGLMVFGVVLGPWSGPAAASSALDCAEREVRAVVHAA ALGLAALLEGQPDERARMALIRNFIAPIRFYDDGSGYLYVYDMNCRNIAHAAQPELVG VNLRDLKDAKGKYAVREAVAVAKKGGGFFDFYWARPGMGGAHLKRGYVEPVPGTDYFI GSGVYVEK" misc_feature complement(172618..>172806) /locus_tag="Deba_0156" /note="Cache domain; Region: Cache_2; pfam08269" /db_xref="CDD:149365" gene complement(173087..173602) /locus_tag="Deba_0157" /db_xref="GeneID:9492595" CDS complement(173087..173602) /locus_tag="Deba_0157" /note="COGs: COG4564 Signal transduction histidine kinase; InterPro IPR013163; KEGG: dma:DMR_14010 methyl-accepting chemotaxis protein; PFAM: Cache type 2 domain protein; SPTR: C4XMV1 methyl-accepting chemotaxis protein; PFAM: Cache domain" /codon_start=1 /transl_table=11 /product="cache sensor protein" /protein_id="YP_003806130.1" /db_xref="GI:302341601" /db_xref="GeneID:9492595" /translation="MGKGSLLGKICGAALMCLALGLGSAWAADDGRSCDEREIKAVVH ALAQGLAPLLKDQPNDEARVALLRKFIAPIRFLSDNSGYLFVYDSNCVNIAHAAQPQM VGKQLADLVDDKGNHPVRQTVEAGKKGGGYYHFWWPRPDTKEITPKVGYAEPIAGTDY FIGSGVYRAVK" misc_feature complement(173243..173497) /locus_tag="Deba_0157" /note="Cache domain; Region: Cache_2; pfam08269" /db_xref="CDD:149365" gene complement(173635..174528) /locus_tag="Deba_0158" /db_xref="GeneID:9492596" CDS complement(173635..174528) /locus_tag="Deba_0158" /note="COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: dal:Dalk_3461 cation diffusion facilitator family transporter; PFAM: cation efflux protein; SPTR: B8FLK3 Cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter" /codon_start=1 /transl_table=11 /product="cation diffusion facilitator family transporter" /protein_id="YP_003806131.1" /db_xref="GI:302341602" /db_xref="GeneID:9492596" /translation="MPTDHDRGDLSGRRITWLGLWVNVALIALKVLGGVLGRSQALIA DAVHSISDLFSDVVVLWGLRMRGKGPDSNHHFGHARLETMSAAVVGLTLAAVAALLGY DAVLSLGRPAAGAPTGLALAVAAVSILAKEMLFQVTMAVGRRIHSASVRANAWHHRSD ALSSVAVLAGVGVAMIWPGLDWADALATLVVALMILAAGWRVLWAALRELSDAAPPAE ITSRIEECVRTVPGVRGFHDLRVRSSGGLHQAQVHVVVPAEMTVAEGHAIAKTVELCL LRDIEGLDQVIVHMDPEIRRE" misc_feature complement(173638..174495) /locus_tag="Deba_0158" /note="Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053" /db_xref="CDD:30402" misc_feature complement(173650..174456) /locus_tag="Deba_0158" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" gene complement(174920..175615) /locus_tag="Deba_0159" /db_xref="GeneID:9492597" CDS complement(174920..175615) /locus_tag="Deba_0159" /note="COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: sfu:Sfum_3054 MgtC/SapB transporter; PFAM: MgtC/SapB transporter; SPTR: A0LMS6 MgtC/SapB transporter; PFAM: MgtC family" /codon_start=1 /transl_table=11 /product="MgtC/SapB transporter" /protein_id="YP_003806132.1" /db_xref="GI:302341603" /db_xref="GeneID:9492597" /translation="MVYLDETTMVARIAMAGALGMIIGLERERHSKAAGLRSCILVCM AGALLMSLSLYLTQLFASNANDSMIRMDPGRLPSYAIAGMGFLGAGAIIQGRRSAWGV TTGAAMWVLTGVGLSVGAGLYLPAFVVVALTFVALAFFPTLARLLPKEQLVVLSLEAD SRKAVDGVRDLLKHYGAHLIFLGKNRCLESDTVSATFRLRIISGAKWATMLDELEQVP DVTCYSWHEADVP" misc_feature complement(<175247..175579) /locus_tag="Deba_0159" /note="MgtC family; Region: MgtC; cl12207" /db_xref="CDD:187193" gene complement(175684..176250) /locus_tag="Deba_0160" /db_xref="GeneID:9492598" CDS complement(175684..176250) /locus_tag="Deba_0160" /note="COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: pgn:PGN_1601 conserved hypothetical protein with LemA family domain; PFAM: LemA family protein; SPTR: Q7MX55 LemA protein; PFAM: LemA family" /codon_start=1 /transl_table=11 /product="LemA family protein" /protein_id="YP_003806133.1" /db_xref="GI:302341604" /db_xref="GeneID:9492598" /translation="MSKGAKIAIGVGLVALLGFLWLFVSPYNTLKAQRENVREAQANV ETDLQRRYDLIPNLVETVKGYAAHEKETLQGVIEARRQFTQAGDIGGKLAADQAMQSA LGRLMVVVERYPELKANQNFRDLQAQLEGTENRITVARTRYNAAVKEYNLAVETLPTM ILARLMGFERIEPFQAAAQAQQAPQVKF" misc_feature complement(175729..176232) /locus_tag="Deba_0160" /note="LemA family; Region: LemA; cl00742" /db_xref="CDD:120079" gene complement(176305..177030) /locus_tag="Deba_0161" /db_xref="GeneID:9492599" CDS complement(176305..177030) /locus_tag="Deba_0161" /note="KEGG: sat:SYN_00536 cytoplasmic protein; SPTR: Q2LR08 Hypothetical cytosolic protein; PFAM: Nucleotidyltransferase domain" /codon_start=1 /transl_table=11 /product="cytoplasmic protein" /protein_id="YP_003806134.1" /db_xref="GI:302341605" /db_xref="GeneID:9492599" /translation="MAKKAPDKPEDIFPELITDLSNALGTDLHGVCLFGSAARGAYVK GRSDINLLVVVAEEAKATASRLSGFYRKWAPAGLAAPLVMNKAYIATSLDVFPLELMT MAAAHKCIHGEDPLEGLVIDDRRLRLQLEREVKAKLMALQGRLIACGGDEKELRHSVI EAAPAMTAILQGCLKLFTGAYPLDRQEVLERAETAGLPVESFRRMAAVRAGRLSPKAK ELTELLEWAVEQLGQLGQRLDQM" misc_feature complement(<176851..177003) /locus_tag="Deba_0161" /note="Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins; Region: NT_KNTase_like; cd05403" /db_xref="CDD:143393" misc_feature complement(order(176881..176883,176887..176892, 176914..176916,176923..176931)) /locus_tag="Deba_0161" /note="active site" /db_xref="CDD:143393" misc_feature complement(order(176881..176883,176887..176892, 176914..176916,176923..176931)) /locus_tag="Deba_0161" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143393" misc_feature complement(order(176881..176883,176887..176889)) /locus_tag="Deba_0161" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143393" gene complement(177052..177852) /locus_tag="Deba_0162" /db_xref="GeneID:9492600" CDS complement(177052..177852) /locus_tag="Deba_0162" /note="COGs: COG1512 beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: sus:Acid_0973 hypothetical protein; PFAM: protein of unknown function DUF477; SPTR: Q02AF1 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF477)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806135.1" /db_xref="GI:302341606" /db_xref="GeneID:9492600" /translation="MKFSIKTTASLVLAALFVFLLAGVAPATEQWPRPKGPVADFAGV LSPQAQRAITGLSTELWQKTGAAIVVATVPELPPDQTIESLAVELMQSWGVGQKGKDE GLLFLVAVKDRRLRIEVGYGLEGLIPDAIAARIRDQAMRPHLKQNDYDQGLLAGVAAA AGVIAKDKGVTLTGLPERPDKSSGGKAFGLIPLILMIVAFIVLGRLGRRGGGGRGGGG GALLTGMLLGSMLGGGRHGGGGFDSFGGGGFGGFGGGFSGGGGASGDF" misc_feature complement(177400..177726) /locus_tag="Deba_0162" /note="Domain of unknown function (DUF477); Region: DUF477; cl01535" /db_xref="CDD:194159" gene complement(177854..178822) /locus_tag="Deba_0163" /db_xref="GeneID:9492601" CDS complement(177854..178822) /locus_tag="Deba_0163" /note="COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR001623:IPR002939:IPR008971:IPR018253:IPR 003095; KEGG: sat:SYN_00894 chaperone protein; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Q2LTT1 Chaperone protein; PFAM: DnaJ domain; DnaJ C terminal region" /codon_start=1 /transl_table=11 /product="chaperone DnaJ domain protein" /protein_id="YP_003806136.1" /db_xref="GI:302341607" /db_xref="GeneID:9492601" /translation="MAKDYYKVLGLEKGASVEDIKKAYRKLAMKYHPDRNQDDKAAEE RFKEVSEAYSVLSDPEKRKQYDTFGSAGFKQRYSQEDIYRGSDINDILRDMGLGGDFF SRIFGGRGGGYRAYTVNNGGMGGFGPTGAAPGMGGFDFGAAGAGPNKGADLVYELPVS LAEVFHGAEKMVSYRRSGRMERVSVKVPPGIATGQKLRLAGKGDDAPGHGGQPGDLFI KIRVLDDERFTRHGDDLEVIAPISFSTAALGGNVELTAIDGKTLKVKAPRGSQNGARL RVKGKGLPLFRGGGHGDLYVRLQVEVPGRLTSRQKELLEQLAQEGL" misc_feature complement(<178295..178813) /locus_tag="Deba_0163" /note="chaperone protein DnaJ; Region: DnaJ_bact; TIGR02349" /db_xref="CDD:188212" misc_feature complement(178649..178813) /locus_tag="Deba_0163" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cd06257" /db_xref="CDD:99751" misc_feature complement(order(178670..178675,178682..178687, 178694..178696,178721..178729)) /locus_tag="Deba_0163" /note="HSP70 interaction site [polypeptide binding]; other site" /db_xref="CDD:99751" misc_feature complement(178157..178369) /locus_tag="Deba_0163" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" misc_feature complement(177884..178123) /locus_tag="Deba_0163" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" gene complement(178969..180873) /locus_tag="Deba_0164" /db_xref="GeneID:9492602" CDS complement(178969..180873) /locus_tag="Deba_0164" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: dal:Dalk_2351 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Q1NVV5 Chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003806137.1" /db_xref="GI:302341608" /db_xref="GeneID:9492602" /translation="MGLSFGKKMAVVLTALALAAIAPLIVLAVTAVDAARDSFVQQKF EQLRSIRQIKANQIIDYLGQRQRDMEVLAANPQALAALAAFGRAFAEEGGRVGGPLWQ EAQRQYGPWLSRYQKAYGYYDIFLINQNGDIVYSVAQEPDLGQNLRGGPLAGSSLAQA LAAASAEKATIADFAPYAPSKGEPAAFLACRAGAGAVAAQISIEQVNKIMQERSGMGQ TGESYLVGPDKLMRSDSFLDATGHSVRASFADPVKGAVDTQASRAALAGQGGEEIIAD YNGNQVLSAYAPLDFGGLRWAILAEIDLAEVVSESKAAQELLTTVMLVGAAAGAAILA ALLASGLVVRRAIGSLRQLARTLGDSARQIAVASGQVAGSSQGLAQGSSEQAASLEET SASLEQLAAMAQANSQHAQDADGLMIEAKRVVGQAGQTLESLEQAVTTITANSAKMAK IIKTIDEIAFQTNLLALNAAVEAARAGEAGAGFAVVAEEVRSLALRAAAAARETTGMI EDSGGRIASLSSLTAQMDQIFAEVRQSASRVAELVALIAGASHEQSQGVEQINQAVGQ MDRITQSSAATAEEMAASAEEMAAQTGSLREVVGELEGLVNGARQAAPPAQPRKALES PRLQLLGNTK" misc_feature complement(179164..179619) /locus_tag="Deba_0164" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(181013..181849) /locus_tag="Deba_0165" /db_xref="GeneID:9492603" CDS complement(181013..181849) /locus_tag="Deba_0165" /note="COGs: COG1639 signal transduction protein; InterPro IPR013976:IPR003607:IPR006675; KEGG: dba:Dbac_0476 signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: Q1NMB7 Metal-dependent phosphohydrolase, HD subdomain; TIGRFAM: metal dependent phophohydrolase; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_003806138.1" /db_xref="GI:302341609" /db_xref="GeneID:9492603" /translation="MVTDRVAAKKKVQLIKNLPTLPGMIDMISRAVDSKRFSAADIGK LISKDQVLTAKVLKLANSAFFGFSRKVGSLTQALVLLGFDVVKGLILTSSVFDLMKDQ SGELWRHSMGVATVSNIIASEIGMADVEEVGLAGLLHDLGKVVLRAHMPEDHASISEL VEVEEMPVRQAEREVLGFDHTHVGLWLAEAWKLPEQLTEPLRWHHQPEASRKAPLATA VVHFADILARGYGYGDGGDPWVPPLDRAALKALGLDSQKLRNIIDAMCEKLVDQPGSL SI" misc_feature complement(181034..181840) /locus_tag="Deba_0165" /note="Predicted signal transduction protein [Signal transduction mechanisms]; Region: COG1639" /db_xref="CDD:31826" misc_feature complement(181229..181798) /locus_tag="Deba_0165" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(181852..182247) /locus_tag="Deba_0166" /db_xref="GeneID:9492604" CDS complement(181852..182247) /locus_tag="Deba_0166" /note="KEGG: dsa:Desal_2720 hypothetical protein; SPTR: C6BZD7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806139.1" /db_xref="GI:302341610" /db_xref="GeneID:9492604" /translation="MIKVPVDKLSDGQVLAQDVVRDDGVVLMTKGRQITAEVINLLGR LQVEAVVVEGDAFASDEERQAYQQLMEQALDHRFSRVADDPVLKAIRELLRAKLRAGC VFGGPKPGAPTIDDSGKLLKKTGRPDGGA" gene complement(182312..182938) /locus_tag="Deba_0167" /db_xref="GeneID:9492605" CDS complement(182312..182938) /locus_tag="Deba_0167" /note="COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070:IPR017945:IPR004388; KEGG: ank:AnaeK_1405 SUA5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SPTR: Q1NKA5 Sua5/YciO/YrdC/YwlC; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein" /codon_start=1 /transl_table=11 /product="Sua5/YciO/YrdC/YwlC family protein" /protein_id="YP_003806140.1" /db_xref="GI:302341611" /db_xref="GeneID:9492605" /translation="MPEPLIWPVDAAAPAPDVLARAAALLAEGAVVAFPTETLYGLAV DAANHRALARLAALKERPDDKPFPLIIGAEGQIAPLAATLTPLARRLMAAHWPGPLTI VLAAAPGLPPELTHQGGVALRLSSHPVAAGLALALGRAVTATSANLAGRPAQARPEAL DPALLARIDLLLDGGPCPGGAPSTIVLASGRRAKVLRQGAVALAEEER" misc_feature complement(182342..182839) /locus_tag="Deba_0167" /note="yrdC domain; Region: Sua5_yciO_yrdC; cl00305" /db_xref="CDD:185891" gene complement(182931..184700) /locus_tag="Deba_0168" /db_xref="GeneID:9492606" CDS complement(182931..184700) /locus_tag="Deba_0168" /EC_number="4.1.1.21" /EC_number="6.3.4.13" /note="COGs: COG0151 phosphoribosylamine-glycine ligase; InterProIPR020562:IPR020561:IPR020560:IPR000031:IPR 011761:IPR016185:IPR011054:IPR020559:IPR000115:IPR013817:I PR013815:IPR013816; KEGG: dal:Dalk_2057 phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: phosphoribosylamine--glycine ligase., phosphoribosylaminoimidazole carboxylase; SPTR: B8FG72 phosphoribosylamine/glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: phosphoribosylglycinamide synthetase, N domain; AIR carboxylase; phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylaminoimidazole carboxylase, PurE protein" /codon_start=1 /transl_table=11 /product="phosphoribosylamine/glycine ligase" /protein_id="YP_003806141.1" /db_xref="GI:302341612" /db_xref="GeneID:9492606" /translation="MKILVIGGGGREHAIVWKLAQSPKVQAIFCAPGNPGMAGLATCL TIDPDDIAGLKAFALDNHIDLTVVGPEAPLVAGLTDVFEQAGLLVAGPSAAAARLEGS KAFAKEVMEAAGVPTAQCRIFDDAAQAKDHCRNLGGPVVVKADGLAAGKGVIMCRTAG EAMAACERIMEERAFGQAGERVVIEEWLEGEEASFLVFTDGQAIAAMPSSQDHKAVGE GDTGPNTGGMGAYSPAPVVGPALESAVIERVIKPTLAEMKRRGAPFKGVLYAGLMIDK AGEPKVLEFNVRFGDPECQPLLMRLDSDLAEILQLLAQGRLAEAEVEWKADPAVCVVL ASGGYPGDYAKGFEISGVEEANAVEGARVFHAGTALKDGKLVNAGGRVLGVCATGVDI AQAIERAYEACGKIWWQGMLLRRDIGHRALARLKNRPLVGIVMGSPNDWEVMKSAAKA LTELGVPHEARVLSAHRTPGQAAQYAASAAERGLKVIIAGAGWAAHLAGAMAAQTVLP VIGVPIGSSQLNGLDALLSTVQMPPGIPVATVAIGAGGARNAGVLAAQILALGDAALA QGLAQQRRDMAAEVAAAEKKLFA" misc_feature complement(183429..184700) /locus_tag="Deba_0168" /note="phosphoribosylamine--glycine ligase; Provisional; Region: PRK00885" /db_xref="CDD:179154" misc_feature complement(184401..184697) /locus_tag="Deba_0168" /note="Phosphoribosylglycinamide synthetase, N domain; Region: GARS_N; pfam02844" /db_xref="CDD:190449" misc_feature complement(183819..184400) /locus_tag="Deba_0168" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(183435..183719) /locus_tag="Deba_0168" /note="Phosphoribosylglycinamide synthetase, C domain; Region: GARS_C; pfam02843" /db_xref="CDD:190448" misc_feature complement(182961..183416) /locus_tag="Deba_0168" /note="AIR carboxylase; Region: AIRC; cl00310" /db_xref="CDD:153673" gene complement(184732..185334) /locus_tag="Deba_0169" /db_xref="GeneID:9492607" CDS complement(184732..185334) /locus_tag="Deba_0169" /EC_number="2.1.2.3" /note="COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR011607:IPR013982; KEGG: glo:Glov_2760 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; PRIAM: phosphoribosylaminoimidazolecarboxamide formyltransferase; SPTR: B3E7F6 Bifunctional purine biosynthesis protein purH; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazolecarboxamideformyltra nsferase" /protein_id="YP_003806142.1" /db_xref="GI:302341613" /db_xref="GeneID:9492607" /translation="MNRKIMRALISVTDKAGVVEFAQGLARMGVTLISTGGTAKALRQ GGLKVGDVAEVTGFPEMLDGRVKTLHPRIHGGILARRDDQSHRAQLAEHHIAPIDLVC VNLYAFEATVAQPGCSFEDAIENIDIGGPCLIRASAKNHQGVVVVTDPADYDAVLAEM AELGGGVGEKTRARLAAKAFRLTNQYDGAIADYMEKRLAR" misc_feature complement(184753..185319) /locus_tag="Deba_0169" /note="Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-; Region: IMPCH; cd01421" /db_xref="CDD:29633" misc_feature complement(order(184954..184956,185023..185025, 185131..185136,185221..185223,185230..185232, 185290..185292,185296..185298)) /locus_tag="Deba_0169" /note="purine monophosphate binding site [chemical binding]; other site" /db_xref="CDD:29633" misc_feature complement(order(184753..184755,184762..184767, 184771..184779,184801..184809,184816..184818, 184918..184920,184927..184932,184942..184944, 184951..184959,185101..185103,185110..185115, 185122..185130,185137..185142,185149..185154, 185161..185163)) /locus_tag="Deba_0169" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29633" misc_feature complement(order(184954..184956,185134..185136)) /locus_tag="Deba_0169" /note="putative catalytic residues [active]" /db_xref="CDD:29633" gene complement(185488..187398) /locus_tag="Deba_0170" /db_xref="GeneID:9492608" CDS complement(185488..187398) /locus_tag="Deba_0170" /note="COGs: COG0443 Molecular chaperone; InterPro IPR013126:IPR018181:IPR012725:IPR001023; KEGG: aba:Acid345_0982 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Q1IT15 Chaperone protein dnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK" /codon_start=1 /transl_table=11 /product="chaperone protein DnaK" /protein_id="YP_003806143.1" /db_xref="GI:302341614" /db_xref="GeneID:9492608" /translation="MSEKIIGIDLGTTNSVVAIMEGGEPKVITNEEGARTTPSVVAIT DKGERLVGASAKRQAVTNPTNTVYSIKRFMGRRLSECAEEVKQAPYAVEDSGSGQVNV VVQGKKYSPPEISAMVLGKLKKAAEDYLGEKITAAVITVPAYFNDGQRQATKDAGKIA GLEVKRIINEPTAAALAYGLDKKTNETIAVFDFGGGTFDISILEVGDGVVEVKSTNGD THLGGDNIDQRLIDWLVGEFKKDQGIDLSKDPMALQRLREAAEKAKMELSTASETDVN LPFITADASGPKHLNVKLGRAKFEALVEDILKRTLEPCKRALSDAGLQSSQIDEVVLV GGSTRIPKVQEMVKDFFGKEPHKGVNPDEVVAVGAAIQGGVLAGTVGDVLLLDVTPLS LGIETLGGVMTKLIERNTTIPTRKSETFSTAADNQTTVDIHVLQGEREFAKDNRTLGH FQLTGIPPAPRGVPQVEVTFDIDANGIVHVSAKDMATGKQQSIEIKASSGIDDKEVER MVQDAKRFEKEDAERRKAVEARNQLDSMVYQTEKLLNENKEKLDAATIGSMEKALADA KDALKSEDHGRIQQQFEALQSASHAMAQALYSSQTQQQGQPGGAQQAGPQGGAANKAD DDVVDAEFTEHN" misc_feature complement(185599..187392) /locus_tag="Deba_0170" /note="molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290" /db_xref="CDD:178963" gene 187665..188096 /locus_tag="Deba_0171" /db_xref="GeneID:9492609" CDS 187665..188096 /locus_tag="Deba_0171" /note="InterPro IPR000835:IPR011991; KEGG: drm:Dred_0308 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: A4J1A3 Transcriptional regulator, MarR family; PFAM: MarR family" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator" /protein_id="YP_003806144.1" /db_xref="GI:302341615" /db_xref="GeneID:9492609" /translation="MERKPENILALAARLREKSNRFLVDQLARRGVQGFIPAHGDLMV ALFRHGPLPMKDLAKLIDRDKSTLTALVDRLVERGLAQKQKDHADSRVTLVSATPSGL ALKPLFIEVGQAFWKKLFNGFSEGEKIIAAELLGRMNDNMS" misc_feature 187773..188048 /locus_tag="Deba_0171" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 188172..188765 /locus_tag="Deba_0172" /db_xref="GeneID:9492610" CDS 188172..188765 /locus_tag="Deba_0172" /note="KEGG: dal:Dalk_2494 hypothetical protein; SPTR: B8FFC7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806145.1" /db_xref="GI:302341616" /db_xref="GeneID:9492610" /translation="MKFDGKQAPEWMDKNQLKQLLTRGWMTHDAMWFQQCLAEVGVER ANKLNRGAIRAMAGREVTRLKAALGVERVTDMAGLRRFMVAGLELSVGDFMSFGWEWG PSSMRMVMERCFAQRGMTALGVADRYECGIYERIYAWLDALGVEHHDDCPTNLCQMIH YGHCRREMFFRFPDASPTPPQKPLNGNSSGAVASSKG" gene complement(188711..189991) /locus_tag="Deba_0173" /db_xref="GeneID:9492611" CDS complement(188711..189991) /locus_tag="Deba_0173" /note="COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: sfu:Sfum_3400 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: A0LNS1 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_003806146.1" /db_xref="GI:302341617" /db_xref="GeneID:9492611" /translation="MCKRLPLWAALAAILLCWAAPAAAAQAVRIGVIYPLSGAEASVG RSLLAAARLAVEVANGAYPGLPMVMAQRQGWARLELVSADSGGDGVRAAEAARRLIHE EKVAGILGCYSSGATDAVADACEVAGVPMLSACATDPALTNQGRQWFWRVSPHDGQFI GELFDFLNAIIDGKAPGVPAQARLNMQMLASACRDDAWGEANSRIIRLRAGGQGFSVG ASLMYSPETPDLLTTARKLAMAQPAVILAASYERDAVKLMEALRATKARPLVIWGQDA GFESEGFRAQGRLVEGVCSRTVFSPALARQNPLAKAVNELYRLKTGQDLDGSTARAFT AVQVWAELLDLAGSAEAEDIRAAAQHLHLAKDQLIVPWEGVRFGQDLDNPGQNALGRG LIGQYQMKDGRLALEIVYPFELATAPLLFPFRGF" misc_feature complement(188810..189907) /locus_tag="Deba_0173" /note="Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011" /db_xref="CDD:195943" gene 190472..191248 /locus_tag="Deba_0174" /db_xref="GeneID:9492612" CDS 190472..191248 /locus_tag="Deba_0174" /note="COGs: COG1540 conserved hypothetical protein; InterPro IPR005501; KEGG: sfu:Sfum_3392 LamB/YcsF family protein; PFAM: LamB/YcsF family protein; SPTR: A0LNR3 UPF0271 protein Sfum_3392; PFAM: LamB/YcsF family" /codon_start=1 /transl_table=11 /product="LamB/YcsF family protein" /protein_id="YP_003806147.1" /db_xref="GI:302341618" /db_xref="GeneID:9492612" /translation="MFIDLNCDMGEGFGPYRLGDDQAMLASVTSANLACGFHAGDPLV MDQTIALCAAAGVAVGAHPGYADRRGFGRRPVSAPPAEVRADLIYQIGALAALAKARG LGLTHVKPHGALYNRAAVDEALAGALIEAVAACGPGLVLVCLAGPAGQMIRRLARQAG LKVAAEFFADRGYLSDGRLAPRDAPGALVDRPELAEERCLELLTNGRVRCLDGAWLAL EAQTICLHGDGPAALATAKLLGPALRQAGVALRPLAELAR" misc_feature 190472..191215 /locus_tag="Deba_0174" /note="LamB/YcsF family; Region: LamB_YcsF; cl00664" /db_xref="CDD:186134" gene 191245..193773 /locus_tag="Deba_0175" /db_xref="GeneID:9492613" CDS 191245..193773 /locus_tag="Deba_0175" /note="COGs: COG2049 Allophanate hydrolase subunit 1; InterPro IPR003833:IPR003778:IPR010016; KEGG: sth:STH379 allophanate hydrolase; PFAM: Allophanate hydrolase subunit 1; Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 1; Allophanate hydrolase subunit 2; SPTR: Q67SH9 Putative allophanate hydrolase; PFAM: Metallo-beta-lactamase superfamily; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370; biotin-dependent carboxylase uncharacterized domain" /codon_start=1 /transl_table=11 /product="Allophanate hydrolase subunit 1" /protein_id="YP_003806148.1" /db_xref="GI:302341619" /db_xref="GeneID:9492613" /translation="MNGHVACKPQGEAAVMAYPPRTPDLPARLHALATGLAELAPPGL IETSLGLASLQLCFDPQTTDHQAMARAIEQAWATASVAPPPPGRLLDVPVVYGGEHGP DLAFVAQRAGLSPTQFIARHCARPLPCRCLGFTPGFPYLEGLDPDLACPRLDSPRPDL PPGAVGLGGDQTGLYPLGGPGGWRIIGRTPLLFYHPRRDPPCLVAPGDMIRFRPVADS HFPAPPAARNRWSQDGLAALSVLRSGGLCLVQDAGRFGRSRLGLPQSGALDQQALAVA NALVGNATTDAALELTLLGPRFKVVRPLLAAVCGAGPSPRLDGQPLAMWRAHLLLPDQ ELSFGPPKGGARAVLALSGGVAVEPELGSRAAYPLGRIGAPLAVGEVVRVGPGGWQGQ GGALPPELVPAAADGAITLRAVAGPNEEMFPATALAVLAQSEFTLDERADRRGARLRG PAINARPESAGAAKSERRPPRRGADHPRRPGAGAAARTNHGRVSENRHDHRPRPGSAG PGPARRAPALPADRTRRGRGRHPSTFASNPRNDRGPASMKPGETIPLGGPVSFLVGEN SGRFPRGHGLIIQSRGSVAIIDTGAGQDVLAPWAAQVDLVLNSHSHADHAAGNWLFAD RQILVPRNSFADSGDMRRLSLRYMKTDRQAAGWRKLAREEVGMRPQRPSGFFRPNEEI AIGGVRVIALDAPGHTADHTCFYLPEQGLVWSGDIDLSGFGPWYANPESDIDQFRRAV RMLIELDPKIIAPAHNPPLGQNVRQRLSAYLAVIDRRQEALVELLRQPKTWPMIVDAA LIYGQAAIAQPLFRYFESQMIGKHLDELLAQGAVVCQEGLFSAV" misc_feature 191263..191904 /locus_tag="Deba_0175" /note="Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; Region: DUR1; cl00896" /db_xref="CDD:176822" misc_feature 191266..191853 /locus_tag="Deba_0175" /note="Allophanate hydrolase subunit 1; Region: AHS1; pfam02682" /db_xref="CDD:145701" misc_feature 192019..>192621 /locus_tag="Deba_0175" /note="Allophanate hydrolase subunit 2; Region: AHS2; cl00865" /db_xref="CDD:176587" misc_feature 192946..193509 /locus_tag="Deba_0175" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(193760..194227) /locus_tag="Deba_0176" /db_xref="GeneID:9492614" CDS complement(193760..194227) /locus_tag="Deba_0176" /note="KEGG: sfu:Sfum_0274 hypothetical protein; SPTR: A0LEX3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806149.1" /db_xref="GI:302341620" /db_xref="GeneID:9492614" /translation="MTAIWWAAGALGVLALAAGLLALWRRGRAGRPIRGYLDLIDDLS PAQRAQVEAIRREFLPRVEAIRAGLRGRRALLAELLFAEPIDRPAIDQAVAEILADQA ALERQVIEHIIEERELLDPAQRRQFHDIIVGQFSGGGLGVHDVRAAGRPLKRR" misc_feature complement(193847..194104) /locus_tag="Deba_0176" /note="CpxP component of the bacterial Cpx-two-component system and related proteins; Region: CpxP_like; cd09916" /db_xref="CDD:197366" misc_feature complement(order(193847..193849,193880..193882, 193889..193891,193898..193903,193910..193912, 193922..193924,193934..193936,193946..193948, 193955..193957,193967..193969,193973..193975, 193985..193990,193997..193999,194009..194011)) /locus_tag="Deba_0176" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:197366" gene complement(194251..194616) /locus_tag="Deba_0177" /db_xref="GeneID:9492615" CDS complement(194251..194616) /locus_tag="Deba_0177" /note="KEGG: mta:Moth_2363 transmembrane transcriptional regulator (anti-sigma factor); SPTR: Q2RFZ4 Putative transmembrane transcriptional regulator (Anti-sigma factor)" /codon_start=1 /transl_table=11 /product="transmembrane anti-sigma factor" /protein_id="YP_003806150.1" /db_xref="GI:302341621" /db_xref="GeneID:9492615" /translation="MNCRRAAKLLSPFIDHELSDQRATALESHLAQCPACRARLAALR AGDRLLRQAQAPAGAPWTAADILARRAARPWPSGPWRALAALLRPLAPRPKTAILDEL ADLPPQLMAGAYLRLLGQG" gene complement(194616..195179) /locus_tag="Deba_0178" /db_xref="GeneID:9492616" CDS complement(194616..195179) /locus_tag="Deba_0178" /note="COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627:IPR013249:IPR013325:IPR013324:IPR 014284; KEGG: sfu:Sfum_0272 fis family transcriptional regulator; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: A0LEX1 Transcriptional regulator, Fis family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_003806151.1" /db_xref="GI:302341622" /db_xref="GeneID:9492616" /translation="MNAPLARASDEELIRAMASGQTQALDEFVGRYQARLTGFAQRYL NDWAAAEDLAQETLLRVWQAAPRFEPRAKVSTWVFGVAYRLALNEFRRRGRLARLQGR LAELLAGQRDESPLERLQAGQRLERLNAELARLPQRQRAALLLRVDQGLSYAQIAQVM ELTTAAVESLIHRARQRLRRRLGQEQA" misc_feature complement(194664..195113) /locus_tag="Deba_0178" /note="RNA polymerase sigma factor, sigma-70 family; Region: sigma70-ECF; TIGR02937" /db_xref="CDD:188259" misc_feature complement(194910..195098) /locus_tag="Deba_0178" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" gene complement(195216..196121) /locus_tag="Deba_0179" /db_xref="GeneID:9492617" CDS complement(195216..196121) /locus_tag="Deba_0179" /note="InterPro IPR002781; KEGG: dma:DMR_43930 hypothetical membrane protein; PFAM: protein of unknown function DUF81; SPTR: C4XR04 Hypothetical membrane protein; PFAM: Sulfite exporter TauE/SafE" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806152.1" /db_xref="GI:302341623" /db_xref="GeneID:9492617" /translation="MLFPVSGVECPLWLPPLVAFVLSFFTSMGGVSGAFLILPFQMSF LGFTSPAVSPTNLVYNVVAIPSGVYRYLREGRMVWPLTWIVVSGTLPGVVAGGFIRLH WLPDAKPFKVFVGCVLLYIGLRLAKDVFASRRTAKAAGGAANAATTSDFKVRVKHFSW RRLTYEFAGQDYTCGVPGIFALSLAVGLVGGVYGIGGGAIVAPFFVAIYGLPVHTVAG AALMGTFITSVAGVAFYQLVAPLYGQMAVAPDWLLGALFGLGGFCGMYLGARAQRFVP AVWIKLMLTGLLLYVATRYIVGYFL" misc_feature complement(195237..196073) /locus_tag="Deba_0179" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" misc_feature complement(<195744..196073) /locus_tag="Deba_0179" /note="Predicted permeases [General function prediction only]; Region: COG0730; cl00498" /db_xref="CDD:186038" gene 196290..196784 /locus_tag="Deba_0180" /db_xref="GeneID:9492618" CDS 196290..196784 /locus_tag="Deba_0180" /note="COGs: COG1720 conserved hypothetical protein; InterPro IPR001378; KEGG: drt:Dret_2266 protein of unknown function UPF0066; PFAM: protein of unknown function UPF0066; SPTR: C8X553 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: conserved hypothetical protein TIGR00104" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806153.1" /db_xref="GI:302341624" /db_xref="GeneID:9492618" /translation="MNLEPVSYAPIGVARSPHADAAGAPIQPSGARGQAGHIILRPEL AEGLRDLEGFSHLIVIYHCHQSGPARLLVTPFLDEAAHGVFATRAPARPNAIGLSVVR LAGVRDNVIDILDVDLLDGTPILDVKPLVPAFDLPQGPVRVGWLATRASQADQARADE RFSG" misc_feature 196317..196676 /locus_tag="Deba_0180" /note="Escherichia coli YaeB and related proteins; Region: UPF0066; cd09281" /db_xref="CDD:187753" misc_feature order(196317..196322,196428..196436,196440..196442, 196461..196463,196473..196475,196536..196553, 196563..196565,196569..196571,196575..196577, 196662..196676) /locus_tag="Deba_0180" /note="homodimer interaction site [polypeptide binding]; other site" /db_xref="CDD:187753" misc_feature order(196470..196472,196476..196481,196551..196553, 196575..196577,196581..196583,196638..196640, 196653..196655) /locus_tag="Deba_0180" /note="cofactor binding site; other site" /db_xref="CDD:187753" gene complement(196774..198831) /locus_tag="Deba_0181" /db_xref="GeneID:9492619" CDS complement(196774..198831) /locus_tag="Deba_0181" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR001638:IPR013656:IPR003661:IPR003594:IPR 005467:IPR000014:IPR000700:IPR009082:IPR001610:IPR004358; KEGG: dsa:Desal_2320 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: extracellular solute-binding protein family 3; PAS fold-4 domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: extracellular solute-binding protein family 3; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: Q1NWA7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor signal transduction histidine kinase" /protein_id="YP_003806154.1" /db_xref="GI:302341625" /db_xref="GeneID:9492619" /translation="MIGRRMLTLTSLLAAALLIAAWRPAAALADQTSIMVSGDEAYPP YEFNDEQGLPSGFNVEVMSAAARVMGLRASIRLGPWGPVRAQLERGQIDALCGMYYSP ARAEKVLFSRPHLVVSFAVFTRHGSDISSLDDARGRTIIVQQGDYADDYVSAAKLGGR VIRVDSPAKALRALVAGQGDCALVARLQGLYLARRLGLGNIAPVGPPVLPRQYCFAVK KGDERLLAALNEGLGVIRASGQYDQIYDKWFGALEEESVWEHMLGHLHWILGPAALIF LLAMAWAWSLRRKVAQRTGELRGELVARRRAEADLQQSQESLRALVDSSSDAILSLDP ARHILRCNPAFLRMFGYAEAEALGKSTRILHLSHENFERLGREAYAVIGASGHWLGEV VLQTKDGRELPVELALSAIRDPDGRTTGHVAIIRDISQRRQAEQEKARLEDQLRHAQK MEAIGTLAGGIAHDFNNILGAIMGYAELSLLDAQEGKTSPEKLRNILTSSKRARDLVR QILTFSRKLTPDMRPLRPREVILHALELLRPAIPRMVEIRCRLADDLPLIAGDVTQLE QVLINLASNASDAMPDGGVLTIKAAARQLSPQEAAELALRPGLHVVIAVSDTGHGMDK QTMEQIFDPFFTTKEVGKGTGLGLATAFGVIKAHAGAITCQSEPGRGTVFTLYLPAAE PSR" misc_feature complement(198079..198732) /locus_tag="Deba_0181" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature complement(198085..198732) /locus_tag="Deba_0181" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature complement(order(198277..198279,198391..198393, 198520..198522,198592..198594,198706..198708)) /locus_tag="Deba_0181" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature complement(order(198298..198300,198316..198318, 198328..198330)) /locus_tag="Deba_0181" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature complement(198190..198207) /locus_tag="Deba_0181" /note="hinge residues; other site" /db_xref="CDD:29040" misc_feature complement(197548..197859) /locus_tag="Deba_0181" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(196777..197823) /locus_tag="Deba_0181" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature complement(order(197635..197637,197650..197652, 197728..197736,197740..197742,197779..197781, 197797..197799,197809..197811)) /locus_tag="Deba_0181" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(197608..197610,197614..197616, 197698..197703,197710..197712,197734..197736, 197749..197751)) /locus_tag="Deba_0181" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(197287..197481) /locus_tag="Deba_0181" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(197302..197304,197314..197316, 197323..197325,197335..197337,197344..197346, 197356..197358,197407..197409,197416..197418, 197428..197430,197437..197439,197449..197451, 197461..197463)) /locus_tag="Deba_0181" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(197443..197445) /locus_tag="Deba_0181" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(196798..197139) /locus_tag="Deba_0181" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(196810..196812,196816..196821, 196834..196836,196840..196842,196888..196899, 196966..196971,196975..196977,196981..196983, 196987..196989,197098..197100,197107..197109, 197119..197121)) /locus_tag="Deba_0181" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(197107..197109) /locus_tag="Deba_0181" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(196891..196893,196897..196899, 196969..196971,196975..196977)) /locus_tag="Deba_0181" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(199235..200014) /locus_tag="Deba_0182" /db_xref="GeneID:9492620" CDS complement(199235..200014) /locus_tag="Deba_0182" /note="KEGG: ote:Oter_2380 hypothetical protein; SPTR: C5S8G0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806155.1" /db_xref="GI:302341626" /db_xref="GeneID:9492620" /translation="MKIKRLIIALALLMLPTSALAGWVFTEQADDDGEQEKIFIQAGK LAVGQSENAIQTVFDTKSGQLLLINHQSKTYWQGTPQEMKSGMSSAMDAAIAQQTKDM PPEQAAQYKAMMQAMKEQMTNKPAGQAPRPKVGVAKEGDGGKVAGYDTVKYAISQDGQ VVAWYWVAPNLDLSDEFDMANMLEMMDGFNPEPDYSTDPALIAVFEKGYPLKVVELDQ GQENVIEQKAAVEEKNLPAALFQAPAGYKRSDLAGVAGDGQ" gene 200318..201403 /locus_tag="Deba_0183" /db_xref="GeneID:9492621" CDS 200318..201403 /locus_tag="Deba_0183" /note="COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665:IPR006690:IPR006664; KEGG: nha:Nham_0236 OmpA/MotB; PFAM: OmpA/MotB domain protein; SPTR: Q1QRL1 OmpA/MotB; PFAM: OmpA family" /codon_start=1 /transl_table=11 /product="OmpA/MotB domain protein" /protein_id="YP_003806156.1" /db_xref="GI:302341627" /db_xref="GeneID:9492621" /translation="MFPIRRSCLALIIALGMGAALAQAATAPPSADLAGASDSPLLKR YEGSIIISSDKRAFDELALPLGPLECPDPKARDAKNNRVFQPKIVSDLEGAYTRLVYL NPPGRSSLEVLRNYQDEVAAKGGEILYQCKGEACGGDPARGAAGGGGEQSLMMKLVAP ERVTDDYFSPGGCALQSRIRDQRYFAARIPADGGDAYLALMTWVSTSSGSCRAFNDRA FTLAVLIEPKAREQKMVTVKAAEMASNLDSQGRIALYGVHFDFDKAVVKPESRPTLQE IAALLAADPALEILVVGHTDNQGGFAYNVELSQRRAQAVVKALTGDFGVAPGRLTPFG AGMAAPTASNDSEEGRAKNRRVELVKR" misc_feature 201086..201394 /locus_tag="Deba_0183" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature order(201098..201103,201200..201205,201212..201214, 201224..201229,201236..201238,201365..201367, 201377..201379) /locus_tag="Deba_0183" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene complement(201420..202163) /locus_tag="Deba_0184" /db_xref="GeneID:9492622" CDS complement(201420..202163) /locus_tag="Deba_0184" /note="KEGG: mta:Moth_1438 hypothetical protein; SPTR: Q2RIJ0 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF364)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806157.1" /db_xref="GI:302341628" /db_xref="GeneID:9492622" /translation="MNDSTIQALRGELTSLAQRRGLLAEQVAVRIKPLSVKQAIGTPE RDDFPLQKGKERIIEASFKGGVGQAFTDAFRDFESDVAGLLALDLTDPFNAAAFVAAA NAIAAHLGLARQTIHCRDKEPTLCAPKLVEYLRRRHPGARRVTLVGLQPAMAAALAPH YELAILDMDPDNIGRTVAGATVGHGGRDLERLAAWADVLAATGSTLANNSIEAVRAAA GPRPVIFFGVTIAGAAELLGLERFCPLGH" misc_feature complement(201483..>201740) /locus_tag="Deba_0184" /note="Domain of unknown function (DUF364); Region: DUF364; cl00885" /db_xref="CDD:193966" gene complement(202160..203005) /locus_tag="Deba_0185" /db_xref="GeneID:9492623" CDS complement(202160..203005) /locus_tag="Deba_0185" /note="COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: sfu:Sfum_3704 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A0LPM2 ABC transporter related; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806158.1" /db_xref="GI:302341629" /db_xref="GeneID:9492623" /translation="MTALLAAENLGHAYGRRVALGDVSLGVAPGQVLSILGPNGGGKT TLLKLLLGLARPQSGRVLLDGQDMAGLSAKNVARRLAYVPQNHRPAFAYAVLEVVLMG RLPHKPFWFRFGKADEALALAALERLGIGHLARRPYTDLSGGERQLTLIARALAQDAA VLILDEPASGLDYGAQLRLLERLRALADEGRAIVQSTHFPDHALWIGGRAALLRRGRI IAEGPADQVINEKNLQRLYDCPIGVESLPGGGRICAPRNLGRPAPAEDSAPISAISAG RDKRQ" misc_feature complement(202235..202999) /locus_tag="Deba_0185" /note="ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120" /db_xref="CDD:31317" misc_feature complement(<202490..202987) /locus_tag="Deba_0185" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(202874..202897) /locus_tag="Deba_0185" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(202508..202513,202751..202753, 202871..202879,202883..202888)) /locus_tag="Deba_0185" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(202751..202762) /locus_tag="Deba_0185" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(202556..202585) /locus_tag="Deba_0185" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(202508..202525) /locus_tag="Deba_0185" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(202490..202501) /locus_tag="Deba_0185" /note="D-loop; other site" /db_xref="CDD:72971" gene complement(203002..204015) /locus_tag="Deba_0186" /db_xref="GeneID:9492624" CDS complement(203002..204015) /locus_tag="Deba_0186" /note="COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ppd:Ppro_1462 transport system permease protein; PFAM: transport system permease protein; SPTR: A1AP08 Transport system permease protein; PFAM: FecCD transport family" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_003806159.1" /db_xref="GI:302341630" /db_xref="GeneID:9492624" /translation="MKNALTPTLLALGLAALMALSLALGRYPVAPADLARLAASLLGG DGGAADPGLTTVYNVVINIRLPRVLAAVLIGAALAASGAAFQAMFVNPLVSPDLLGVL AGASFGAALGMTLGQSWPVVQLCAVGCGLLAVAAAVGLAALYRGERLLMLILGGVVSS AMFTALLTLVKYVADPYDQLPAIVHWLMGGLTLADGPTVWAMAGPLAAAVLLLALLAG RLNVLSMGDEEARALGVNVGRLRLLLIVAATVAGALTVALAGVIGWVGLVIPHIARMV VGPDNRRLMPAAILMGGAYLLLVDDLARLLLATETPLGILTALVGIPFFAAALGQARR GWQ" misc_feature complement(203029..203763) /locus_tag="Deba_0186" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature complement(order(203173..203175,203194..203196, 203317..203325,203329..203346,203350..203355, 203359..203367,203371..203376,203740..203748, 203758..203760)) /locus_tag="Deba_0186" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature complement(order(203029..203031,203038..203043, 203050..203052,203059..203064,203071..203073, 203224..203226,203452..203454,203461..203466, 203503..203505,203509..203514,203521..203523, 203530..203535,203542..203547,203554..203559, 203563..203565,203722..203724,203737..203739, 203743..203745)) /locus_tag="Deba_0186" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(203080..203082,203104..203106, 203236..203238,203248..203250,203422..203424, 203503..203505)) /locus_tag="Deba_0186" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene complement(204012..205052) /locus_tag="Deba_0187" /db_xref="GeneID:9492625" CDS complement(204012..205052) /locus_tag="Deba_0187" /note="COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: sfu:Sfum_3702 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: A0LPM0 Periplasmic binding protein; PFAM: Periplasmic binding protein" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="YP_003806160.1" /db_xref="GI:302341631" /db_xref="GeneID:9492625" /translation="MARATRLIVILALAALLWPAAGPAQARLITDMAGRQVDVPAVVS KVYATAPPAAYMVLALSPKLLVGLNAPPPESARGYLSPRLWDLPVLGGWFGQGRGANL ESLLAARPDVVLAFGWRNQPAQWKIEQTLAPLGLPVLRVELGGLADFPRFFLFLGELC NQPERGRALAAHAQGVLDDMARLRAAVPPPKRPRVYYAEGPRGLHTECDQSFHAELIE LCGGQNVRKCRAGGIYGMESVSMEQVLAYDPQVILSHEPLFLGQELKQGLWRGLPAVR EGRAYAIPTRPLNWFDRPPSFMRLLGAHWLAHKLHPQLYPVDMAAKTMEFFRLFLGVE LSRQAAEELLGP" misc_feature complement(204096..204974) /locus_tag="Deba_0187" /note="Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface...; Region: TroA-like; cl00262" /db_xref="CDD:193735" misc_feature complement(order(204579..204581,204672..204674, 204681..204686)) /locus_tag="Deba_0187" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:29734" gene complement(205106..207088) /locus_tag="Deba_0188" /db_xref="GeneID:9492626" CDS complement(205106..207088) /locus_tag="Deba_0188" /note="COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: ppd:Ppro_1470 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A1AP16 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: outer membrane autotransporter barrel domain" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003806161.1" /db_xref="GI:302341632" /db_xref="GeneID:9492626" /translation="MKRELATIIMLLGLALALAAPAPARAEETHRIEPVDVSASAEQE RPNSPYRLPESARAATWSIDQAGIEALEPRDVFDVLSYAPGLQTSFQGRKGMNFISGR GGGNFIGGGGYAILVDGVYVPWTQSSRVMASFPVETIESIRVVRDATTLTLAPLSGLG SIGTAIQGVILIKTIKPAKQQSQVKAGVGNLGRYKAFLSHGDRVGDGYYSLNYNKQHD QGRENWNNGSDSDTLLLKGGYDNQNSFKADASFYYDAASRQIQRSTAVSKTSDAKWRY QPLDTLMATASAAKQWTASQTTNLGLYTGLVDGQTEYRSWSKPKAYSEHDWQDNVVQA DLSHIIASGANNLRVGGQAIFWHCPNGQLFYEGVSRDEELYSLYLHDEYALGQALSLD AGARVDHKHITKGLNMYSATDAKPSDLIDDVWAEPSYGVAGGAAYQINKMLEATLRLS YTEQGADEFLLTKSGQTLKPEKQLRYELGLVAQPLPALRVTATAFAYDLTDMKQAVGS VTKGDDVINIYDNADAVRSGCELDLGGWLFTPDLTYGLTYGYQRSNNDIDDKSIPHHL ATLRLGYRFAPFQGNLLMRYVSDFESNQFAIDNRYHEMDQYSRIDANVSYDFSLDKAQ MRATVFAQNLTDERYQTRLGWEDVGLTYGLELAAKF" misc_feature complement(205109..206914) /locus_tag="Deba_0188" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:162535" misc_feature complement(205157..206911) /locus_tag="Deba_0188" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature complement(order(206567..206587,206600..206605, 206651..206683,206723..206746,206777..206794, 206828..206857,206885..206911)) /locus_tag="Deba_0188" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature complement(order(206081..206083,206162..206164)) /locus_tag="Deba_0188" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene complement(207122..208984) /locus_tag="Deba_0189" /db_xref="GeneID:9492627" CDS complement(207122..208984) /locus_tag="Deba_0189" /note="COGs: COG1180 pyruvate-formate lyase-activating enzyme; InterPro IPR007197; KEGG: ppd:Ppro_1469 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SPTR: A1AP15 radical SAM domain protein; PFAM: Periplasmic binding protein; radical SAM superfamily" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003806162.1" /db_xref="GI:302341633" /db_xref="GeneID:9492627" /translation="MGGVAQAGLRAIRCDICERGCLLGPGRSGACGLYEARDGQVVEI VADRYLAVGPLSIETMPLLHHNPGAKYLQISTTGCNFDCPGCISTVIARQTPRHGKAL TRLTPELVVEKAIAANCLGVAFLMNDPLASLPTFLRVAALAKARGLEVGCSTNCYFTA QSLERLLPLLDFINIGLKGFSEAAYHACGGSAGLGPVWRNLRALVAAGVHVELSVIYA RDKEPELVALARAVAAISPRIPLQLMRFIPFEGAAANQEPAVRQAEAFCARLRDELAH VYLFNTPGTRFLDTVCPACGHVALRREFYGPMGAKLLGEPPARPLEPRCPACGAGLDI VGQRAAGAHQEEDFQGGYPFTRALEMVEAMVIAMGSREQSDVVRAWERLLAPGGLKRL HQCAQEPRQYIDAVRWFGAAVDLREGAEALAAYLEAKLDDMAQALAGLERRPTVYYAM AKPLFYLSGGRLENRLVELAGGVSLNKLLPPGGRPGRSLSVDRLNELGPEVIFISAFL SNTVEDFLAECRELGVEARAVRQGRVYAHPAPGWDFGSPRWVLGLMHIARTLHPELVS LDVMAQAQAFYRRFYGLDFSPGQVNRSFAKPAGNWRWPADGERIAPAATEAPQR" misc_feature complement(208109..208885) /locus_tag="Deba_0189" /note="Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]; Region: PflA; COG1180" /db_xref="CDD:31373" misc_feature complement(208220..208759) /locus_tag="Deba_0189" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(208247..208252,208337..208339, 208457..208459,208520..208525,208601..208606, 208610..208612,208724..208732,208736..208738, 208742..208744,208748..208750)) /locus_tag="Deba_0189" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature complement(207275..>207700) /locus_tag="Deba_0189" /note="Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface...; Region: TroA-like; cl00262" /db_xref="CDD:193735" gene complement(208957..209589) /locus_tag="Deba_0190" /db_xref="GeneID:9492628" CDS complement(208957..209589) /locus_tag="Deba_0190" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: ppd:Ppro_1468 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A1AP14 methyltransferase type 11; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003806163.1" /db_xref="GI:302341634" /db_xref="GeneID:9492628" /translation="MKTNAKEFDEIARTIFWPLYPVVAGQMLARCGRSAGACLDIGCG GGYLGLELARRSLFHLRMLDQSSQMLEIAQANLTASGLSGRGEVILAGVEAMPLPEAS IDLAISRGSIFFWPDLATAFKEIWRVLAPGGLAQVGGGFGSAAIREAIGDKMRARNGG DDKWRAMVRRNLGPETRQKFTEALDEAGVAGAEIIDSEEEGLWVVLRKPA" misc_feature complement(209188..209475) /locus_tag="Deba_0190" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(209263..209265,209311..209319, 209395..209400,209449..209469)) /locus_tag="Deba_0190" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(209799..210311) /locus_tag="Deba_0191" /db_xref="GeneID:9492629" CDS complement(209799..210311) /locus_tag="Deba_0191" /note="COGs: COG3153 acetyltransferase; InterPro IPR000182:IPR016181; KEGG: dhd:Dhaf_2458 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C6ISG3 acetyltransferase; PFAM: acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003806164.1" /db_xref="GI:302341635" /db_xref="GeneID:9492629" /translation="MLIRQEKPEDFPTIHDLVKIAFQTAKVSNGDEQNFVERLRAGGN YIPELALVAEEEGRIIGHIMLTATAIATAGGPRAVLLLGPLAVMLERRGRGVGARLVE EACAKARALGHGAVVLAGDPAYYARFGFRPTADFGVGNTNGIPEAYVMARELWPGALQ GVGGLITLET" misc_feature complement(209958..210161) /locus_tag="Deba_0191" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(210018..210023,210051..210059)) /locus_tag="Deba_0191" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 210734..210889 /locus_tag="Deba_0192" /pseudo /db_xref="GeneID:9492630" gene 210922..211409 /locus_tag="Deba_0193" /pseudo /db_xref="GeneID:9492631" gene 211505..215914 /locus_tag="Deba_0194" /db_xref="GeneID:9492632" CDS 211505..215914 /locus_tag="Deba_0194" /note="COGs: COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; InterPro IPR005546:IPR006315; KEGG: gdj:Gdia_0206 outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; SPTR: B5ZKP4 Outer membrane autotransporter barrel domain protein; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain" /codon_start=1 /transl_table=11 /product="outer membrane autotransporter barrel domain protein" /protein_id="YP_003806165.1" /db_xref="GI:302341636" /db_xref="GeneID:9492632" /translation="MRSKLIAFMLAGILFIVCHGFAMAAVGTNPGAGNPHDYSGVGDW LGTTESDQYTNSVGATVGGDVDMRQGGSDTVTNSGGVIGGIWMSGSGHNTVTNSGAVS DTIWGGYNSGAGSSGGYNTITNSGMIDDSLRGSYNSGEGSSGGYNAITNSGSAAWNMT GSENVGAYSFGGSNTISNSGDAQGNIFGSWNYGSYSFGGSNVINNDSDVGGNIIGSYN MNTGSSGGGNVISSEGDVVGFIMGSFNFGAGSSGGDNNITVSAGGTVDSGVYGSYNMS AGASGGDNVIVIDGLTTGDVTGSNNDGVGASGGDNNISVSASGTVEGDIYGSLNTGAG SNGGDNTITVGAGGTVEGSVYGSSNEGASSSGGGNTVSNSGTVEGSIYGSYNAGEGSS GGDNTITNGGAAEDFIYGSYNVSDGSAGGYNTITNASGGEVNNAIIGSGNEGAGSSGG YNYIFNHGQAHSIIQGSYNVGEGSGGGFNHLVNTGTAGGLVGSHNEGDHTSGGSNSIV NEGSTNSTYGSFNIGDGSSGGGNTITNSGTSMAIFGSNNDGDGSYGGDNTISNSGTSF TVSGSNNDGDGSYGGYNTLGNSGTAYMLFGSHNTGVGSYGGFNIITNSGDGSYIVGSF NNGVGSYGGFNTITNSGEMLFLYGSVNILDGAYGGDNTINNSGRVTQIAGSLNGGDGA YGGYNTIYNYGTVLGDVYGSDNHGDHSYGGGNIIYNYGAVSGSIYGSSGSSGGVGNVI YNYGAVGGDILAGDGDDFVYLLGNSSVGGVVDGQAGIDSLFLGDGSYNSADLLNFENM GYQGYGVATLQGDWNFNLGVSVLDGSLTLPSGSTLQTPFFSIGDGATAQINGQATVDS FTTVNGGLNVYGSLNSPLVTVGSGGELNVQGALGVSTLTIAGGGTAQINGYLGASTFN VANGGFADIGGLAVIGSSTTIFGGLHLNGSLYSPAVILGAGSNSWGTGTIIGNVINQG WIIPGNSIGTMRILGDYTQTAGSVLWVEVEPGGASDLLWVSGTAYLNGGYLAVSLPHD LYVNGQSWNVLSAGAVSGAFAGIYNQPDSLTVALRAVGRADGVSLEVVRTPFASLGAT PGQKGVGAALDAILPLALQNQDQMYGLLLNMDWNYDLEQIRQVLEAASPEMYDAFSAA SLEAARTFDRLLAWRVLQAGGGAAQPAGPSQAAAKQAKPGEQPLAGGRWSLWGRALGD WANQSGDSGHMGYRIGAGGAVVGADGLLLPWLRTGVAISNSVADIEWSMAGNEGEQRQ INLGLYATAVLDDFHLDAAVSYGSYDNSAKRNVSFADNSGRTNADFDGNTMLARLGGG YDCKADAFRFGPVVSLEYVRLSEDGFSEGGAGYLGLRVDDRDHDYTSSRLGLRAAADW SLADLRLTPSAFANWLHAFNTEARTIQATFGQYGSVPIVVDGADQAADMLETGLGLSA SFGETFSVFLEGSLLQANTWNSQAVSAGLNIAF" misc_feature 214013..215911 /locus_tag="Deba_0194" /note="Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]; Region: COG4625" /db_xref="CDD:34245" misc_feature 215081..215851 /locus_tag="Deba_0194" /note="Autotransporter beta-domain; Region: Autotransporter; cl02365" /db_xref="CDD:194296" gene complement(216029..217195) /locus_tag="Deba_0195" /db_xref="GeneID:9492633" CDS complement(216029..217195) /locus_tag="Deba_0195" /note="COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: dol:Dole_0415 filamentation induced by cAMP protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: Q313X5 Fic family protein; manually curated; PFAM: Fic/DOC family" /codon_start=1 /transl_table=11 /product="filamentation induced by cAMP protein Fic" /protein_id="YP_003806166.1" /db_xref="GI:302341637" /db_xref="GeneID:9492633" /translation="MKRKLQGRYTPISTVSEPAKAFIPNALPPRPPIEWTPELRSKFD QALVALGRLDSLSVLLPESSLFLYMYVRKEAVLSSMIEGTQSSLSDLLLFELDQQPGA PLGDVQEVSSYVAALEHGLKRLREGFPLSLRLIKEIHEILLAKGRDGHKTPGEFRRTQ NWIGGTRPGNAAFVPPPAEYVMECMGALELFLHDQPEPTPVLLKAALSHVQFETIHPF LDDNGRLGRLLITLILCEQKVLSTPILYLSLYFKSHRGFYYELLNRVRQTGDWEAWLD FFADAVQTTASQAVEAARQLMALAKEDRDKIKSLGRTALSVEKTHQALLSKPLATSVV LAQRTGLTPATVNKCLTQLMRLGVVREITEQRRNRIFCYQRYLDVMNQGTELPQ" misc_feature complement(216077..217138) /locus_tag="Deba_0195" /note="Fic family protein [Function unknown]; Region: COG3177" /db_xref="CDD:32990" misc_feature complement(216530..216811) /locus_tag="Deba_0195" /note="Fic/DOC family; Region: Fic; cl00960" /db_xref="CDD:193989" gene complement(217376..217451) /locus_tag="Deba_R0004" /db_xref="GeneID:9492634" tRNA complement(217376..217451) /locus_tag="Deba_R0004" /product="tRNA-Arg" /db_xref="GeneID:9492634" gene complement(217501..218973) /locus_tag="Deba_0196" /db_xref="GeneID:9492635" CDS complement(217501..218973) /locus_tag="Deba_0196" /note="COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545:IPR001650:IPR014021:IPR014014:IPR 000629:IPR014001; KEGG: dal:Dalk_2316 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: B8FIL9 DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase" /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase domain protein" /protein_id="YP_003806167.1" /db_xref="GI:302341638" /db_xref="GeneID:9492635" /translation="MDDTHITPQDDTTQKSGAPLAQGAPFADFNLPEPLLRGLADSGY THCTPIQERTIPLGLAGKDVAGEAQTGTGKTAAFLVPIFYHMLRDQRTDRQFPAALII APTRELAVQIYDDAQQIGRHTDLRMVAVFGGVDYLKQARALREGVDIVVATPGRAIDY IKQRALDLRAVKHLVIDEADRLFDMGFIADLRWIMRRLPPYDRRQSMLFSATLGYRVL ELTYEFMNMPAKVSVAPRQRTVEQVDQELYHCSAPEKMSLLLGLLRREGVDRVMIFAN TKRAVDAIAYKLRGNGLPAEGISGDLTQRRRMQLLEQFKSGELKILVATNVAARGLHV ENISHVINYDVPADPEDYVHRIGRTARAGAVGKAITLCCDRYATHLPYVEEYLGEKIP VCWADDSLFVPDQAGPAPRMPRPAFGPREGGRGRDRDGDGARGGRGGRRTSSAPAAPT TTVASGDGEKVADGQGQKRRRRRRKPAGQPKTTNSAGDGE" misc_feature complement(217729..218964) /locus_tag="Deba_0196" /note="ATP-dependent RNA helicase RhlB; Provisional; Region: PRK04837" /db_xref="CDD:179884" misc_feature complement(218278..218898) /locus_tag="Deba_0196" /note="DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (...; Region: DEADc; cd00268" /db_xref="CDD:28928" misc_feature complement(218749..218763) /locus_tag="Deba_0196" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28928" misc_feature complement(218434..218445) /locus_tag="Deba_0196" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:28928" misc_feature complement(218338..218346) /locus_tag="Deba_0196" /note="motif III; other site" /db_xref="CDD:28928" misc_feature complement(217861..218250) /locus_tag="Deba_0196" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature complement(order(217993..218001,218074..218079, 218137..218148)) /locus_tag="Deba_0196" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(order(217891..217893,217900..217902, 217912..217914,217975..217977)) /locus_tag="Deba_0196" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene complement(219021..219449) /locus_tag="Deba_0197" /db_xref="GeneID:9492636" CDS complement(219021..219449) /locus_tag="Deba_0197" /note="KEGG: amc:MADE_02511 hypothetical protein; SPTR: Q1NRQ0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806168.1" /db_xref="GI:302341639" /db_xref="GeneID:9492636" /translation="MGKLGVALVLLLALAAGGCAPGAKANLSKIQNGMSEDQVAEELG PPESVKLVQFPQQKGKFVVWEYNMVPETPNCPSKMLGRSLAAVCTVGFSEVAISHAEA EPHWVYFEDGKLAFASRAVDCAQYDCRVWPVEVSQVKVDK" gene complement(219636..220091) /locus_tag="Deba_0198" /db_xref="GeneID:9492637" CDS complement(219636..220091) /locus_tag="Deba_0198" /note="COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016:IPR006015:IPR014729; KEGG: rxy:Rxyl_0169 hypothetical protein; PFAM: UspA domain protein; SPTR: C6NV99 UspA domain protein; PFAM: Universal stress protein family" /codon_start=1 /transl_table=11 /product="UspA domain protein" /protein_id="YP_003806169.1" /db_xref="GI:302341640" /db_xref="GeneID:9492637" /translation="MIEGPIIAATDFSKAAEQAVAQAARLAAQRGVKLVLAHVIPPLI TPTPLLDEIQVSQVTADLRREMRQAAEREMQRLRQIESALTEVETVIAEGEPTRELAA LCQSQNAALLVVGAAGAGNIVEAVFGSVARKMVRRAPCSVLVVRPEEAD" misc_feature complement(219654..>219836) /locus_tag="Deba_0198" /note="Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide; Region: AANH_like; cl00292" /db_xref="CDD:193753" gene complement(220194..221447) /locus_tag="Deba_0199" /db_xref="GeneID:9492638" CDS complement(220194..221447) /locus_tag="Deba_0199" /note="InterPro IPR001173; KEGG: dal:Dalk_2929 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: B8FBH5 glycosyl transferase family 2; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806170.1" /db_xref="GI:302341641" /db_xref="GeneID:9492638" /translation="MPYNTALRGYTAKRIEEIGSADILMGIPCFNNEQTIVHVIQMLT HGLAKHFGDKRSVILIADGGSTDDTREMARDFEIKPWQEKIVSIYRGPGGKGSALRSI FEAAARLKVKACGMVDSDLRSITSDWVKYLLDPVLEKDYQFVAPVYQRHKYDGTITNN IVYNMTRALYGKRVRQPIGGDFAISRDVANYYVDQDVWGSDVARYGIDIWMTTSAITQ GFRVCQSNLGVKIHDAKDPAQHLAPMFRQVVWTLFSLMERYEDHWRTQRGSQPVETFD FGVAGDPEPVKVNIEAMLEHFRAGFKQFGALWKDVLPPATFQAVEEAAGQEASQFHLP TSVWIEIMYELAAKFHAWEKFRMRLVELCTPLYFARVASFVRESWDMTSQEAEALVEE QARQFEEAKDYLVEAWARAEQSPEQ" misc_feature complement(220803..221369) /locus_tag="Deba_0199" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature complement(order(221088..221090,221094..221096, 221265..221267,221358..221360,221364..221366)) /locus_tag="Deba_0199" /note="active site" /db_xref="CDD:132997" gene complement(221473..222363) /locus_tag="Deba_0200" /db_xref="GeneID:9492639" CDS complement(221473..222363) /locus_tag="Deba_0200" /note="COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685:IPR011066:IPR010920; KEGG: mbu:Mbur_2331 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: D1JF06 Putative mechanosensitive channel protein; PFAM: Mechanosensitive ion channel" /codon_start=1 /transl_table=11 /product="MscS Mechanosensitive ion channel" /protein_id="YP_003806171.1" /db_xref="GI:302341642" /db_xref="GeneID:9492639" /translation="MPDFTWSMLLDFSTIPGALSLAVVIAAVATVSSRVLTKIMENQA KWVIGHLRRKVDETIVRYMVRLKTLLVALAGVMLFVSLVPQLRALMSTMLAGAGITAL VVGLAAKPTLSNLVSGVAIAAYRPFRIGDKLLIEGESCTVEDITLRHTIVKTWQNRRL IIPNEKIDGMVISNYTIVEERMLCTVEVGVSYDTDIDLARQLMLDEAGRCPHRQADGP EPWVRVVELGEYAVVVRIYLWTENIDEAWLARFWLLEHVKKRFDAAGVEIPFPYRTVV YKKDLPPAKVGAPAPPSSET" misc_feature complement(221557..222168) /locus_tag="Deba_0200" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" gene complement(222371..223429) /locus_tag="Deba_0201" /db_xref="GeneID:9492640" CDS complement(222371..223429) /locus_tag="Deba_0201" /note="COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523:IPR004488; KEGG: glo:Glov_2520 magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; SPTR: B3E687 Magnesium and cobalt transport protein CorA; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)" /codon_start=1 /transl_table=11 /product="magnesium and cobalt transport protein CorA" /protein_id="YP_003806172.1" /db_xref="GI:302341643" /db_xref="GeneID:9492640" /translation="MLDFIKGWSRRAALPPGSLVHVGRRRVQTPSATVTYYNGQGRRV VENAGPGDVAPVADEVCWLRVRGLHDLELIRGLGQRLNLHPMLLEDVVEATQRPKVEE FADYLFVVLRLLRFDQQTAVISEEQLSLVLGRGWVATFEESDDTPLDLVAQRIAQRRG RIAEMGADYLAYAIIDVMIDSNFGVLEAFGESLDAIEDQVLANPSEASAKALYHFKGQ IIHLRRVLWPLREVVNFIARGDSGFFSQPVWPFLRDVADHALHVLDAADAIREQATGL MELHLGALGNRTNEVMKVLTIMASIFIPLTFIAGVYGMNFEYMPELRLHYGYPAVLAA MAAVAAGLIIYFRHKKWL" misc_feature complement(222374..223327) /locus_tag="Deba_0201" /note="Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]; Region: CorA; COG0598" /db_xref="CDD:30943" misc_feature complement(222374..223255) /locus_tag="Deba_0201" /note="magnesium/nickel/cobalt transporter CorA; Provisional; Region: PRK11085; cl00459" /db_xref="CDD:187900" gene complement(223498..225000) /locus_tag="Deba_0202" /db_xref="GeneID:9492641" CDS complement(223498..225000) /locus_tag="Deba_0202" /note="COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399:IPR005829; KEGG: drt:Dret_0678 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related domain protein; SPTR: C8X0M3 Mammalian cell entry related domain protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein" /codon_start=1 /transl_table=11 /product="Mammalian cell entry related domain protein" /protein_id="YP_003806173.1" /db_xref="GI:302341644" /db_xref="GeneID:9492641" /translation="MAGVSTEAKVGVFVMVAIALLGYMTLRLGDFQIGEPAGYEVWAL FDSASGLKLNAPVEMAGITIGKVAGVSLDQGRARITLRINEDVHLPADVQALIRTRGV LGDKFVSIEGGSPAAPPLENGQRLARASVPTDLDQVMSRIGQVAEDIGAITSSLKMSI ASPESQRNIAQSLSNIKELTDTLKVVIGDNQARLDNIIANLDNFSENISQLSDENRSA LTSTIQNFAKASANMEQTMHSLNSVLAKIDDGKGTIGQLVNNDQTVRDLNSTLASLRQ VSDKINQGKGTLGRLVNDDATIDKIDQALTGINDYIGQGDAWRLKVDYRGEYLFQHEA LRSEVNVLLQPRMDKFYLLGVVSDPVGRRRETLTDTTTNTDGEISHVRVKQFTTDKDD LTFNAQIGKRFYDAVIRAGLFQSTGGFALDYMLMDDDLRLTMELFDFSTDEKPHLKLR SDYRFMKYFYVTAGVDDVLSDQGNSTFFMGGGFYFDDNDLKFLLTKAPTP" misc_feature complement(224065..225000) /locus_tag="Deba_0202" /note="ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463" /db_xref="CDD:31652" misc_feature complement(224662..224892) /locus_tag="Deba_0202" /note="mce related protein; Region: MCE; cl03606" /db_xref="CDD:186584" gene complement(225060..225824) /locus_tag="Deba_0203" /db_xref="GeneID:9492642" CDS complement(225060..225824) /locus_tag="Deba_0203" /note="COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: sat:SYN_00410 ABC-type transport system, ATP-binding component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q2LS07 ABC-type transport system, ATP-binding component; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806174.1" /db_xref="GI:302341645" /db_xref="GeneID:9492642" /translation="MAAAENIIELRDLVKNFGRQRVLDGLNLTIPRGRITVIIGRSGG GKSVLLKHMIGLIKPDAGQVLVGGQDIGHLDDRQLNQIRRRFGMLFQDAALFDSMSVF DNVAFPLREHTSHSAAEIARIVADKLRMVGLPGVEAKMPSQLSGGMRKRVGLARAIAL EPEIVLYDEPTTGLDPLMTEAINRLIADTQERLGITSVVISHDIAGALKIAHQIAMLY QGRIIASGSPEQIGDSDDPVVRQFISGSVEGPIEVL" misc_feature complement(225066..225824) /locus_tag="Deba_0203" /note="ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127" /db_xref="CDD:31324" misc_feature complement(225099..225803) /locus_tag="Deba_0203" /note="ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex...; Region: ABC_Org_Solvent_Resistant; cd03261" /db_xref="CDD:73020" misc_feature complement(225684..225707) /locus_tag="Deba_0203" /note="Walker A/P-loop; other site" /db_xref="CDD:73020" misc_feature complement(order(225219..225221,225318..225323, 225552..225554,225681..225689,225693..225698)) /locus_tag="Deba_0203" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73020" misc_feature complement(225552..225563) /locus_tag="Deba_0203" /note="Q-loop/lid; other site" /db_xref="CDD:73020" misc_feature complement(225366..225395) /locus_tag="Deba_0203" /note="ABC transporter signature motif; other site" /db_xref="CDD:73020" misc_feature complement(225318..225335) /locus_tag="Deba_0203" /note="Walker B; other site" /db_xref="CDD:73020" misc_feature complement(225300..225311) /locus_tag="Deba_0203" /note="D-loop; other site" /db_xref="CDD:73020" misc_feature complement(225213..225233) /locus_tag="Deba_0203" /note="H-loop/switch region; other site" /db_xref="CDD:73020" gene complement(225833..226567) /locus_tag="Deba_0204" /db_xref="GeneID:9492643" CDS complement(225833..226567) /locus_tag="Deba_0204" /note="COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: protein of unknown function DUF140; SPTR: Q2LS08 ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806175.1" /db_xref="GI:302341646" /db_xref="GeneID:9492643" /translation="MGGLSEAGEIVLLLAQAALWLLRPPWRMRLVLKQMEFVGNKSIN VVMLTGAFTGGVFALQSYYGFSLFGAESLVGSTVALALTRELGPVLTSLMVTGRAGSA MAAEIGTMRVTEQIDALYVMAVNPVQYLVLPRVLAAVIMLPALTIVANFIGILGGYAV GVGMLGINEGVFVAKIIEYVEFDDIGMGLVKSAIFGLILSLIGCYKGFYTSGGAEGVG RATTEAVVLASVLILAADYALTAIMF" misc_feature complement(225839..226471) /locus_tag="Deba_0204" /note="Domain of unknown function DUF140; Region: DUF140; cl00510" /db_xref="CDD:186046" gene 226973..227887 /locus_tag="Deba_0205" /db_xref="GeneID:9492644" CDS 226973..227887 /locus_tag="Deba_0205" /EC_number="2.7.4.7" /note="COGs: COG0351 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749:IPR004399; KEGG: pla:Plav_2132 phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; SPTR: A7HV13 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase" /codon_start=1 /transl_table=11 /product="phosphomethylpyrimidine kinase" /protein_id="YP_003806176.1" /db_xref="GI:302341647" /db_xref="GeneID:9492644" /translation="MPTARVLIIAGSDSGGGAGIQADVKAATVLGGHAMTVVTALTAQ NSLGVSAVHAAPLDFVRAQFHAVVGDIGADALKTGMLHSAELVELVAELAAPLAAPLV VDPVMVAKGGDRLLAIEAIEALRRRLLPLAALVTPNLDEAEAILGRTVRDRPAMEWAA RQLVELGAQAALVKGGHLAGDPGDALFDGRQAYFFSAPRLHTPHTHGTGCTLATAIAT LLAQGQALVPAVERARLLVRRGIAASQPLGAGHGPVVARADLDPLLSLGQTLDSALQL LPADQAARLRAASPQELAERLARAGKEA" misc_feature 227042..227704 /locus_tag="Deba_0205" /note="ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-...; Region: ribokinase_pfkB_like; cl00192" /db_xref="CDD:193700" misc_feature order(227384..227386,227492..227494,227585..227587, 227594..227599,227606..227608) /locus_tag="Deba_0205" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73186" misc_feature order(227591..227593,227600..227602) /locus_tag="Deba_0205" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73186" gene 227890..229194 /locus_tag="Deba_0206" /db_xref="GeneID:9492645" CDS 227890..229194 /locus_tag="Deba_0206" /note="COGs: COG0422 Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: adg:Adeg_0145 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; SPTR: C9RAP0 Thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis protein ThiC" /protein_id="YP_003806177.1" /db_xref="GI:302341648" /db_xref="GeneID:9492645" /translation="MIDTQLTAARKGQITPAMAAVAQSEGLDAEIIRQGLARGVIAIP CNPAHACLQPRGVGQGLAVKVNANIGTSPDRCDPAEERQKLQAALEAGADAVMDLSTG GDLVAMRRQIIAACPVPVGTVPIYQAAVEITGQGKGVVDLSADDLFRVIEQQAVEGVD FMTVHCGVNMAALERLRLEGRVTDVVSRGGAFMACWIIKNQAENPLFAQYDRLLDICR RHDVTLSLGDGLRPGCLADATDRAQITELITLGELTQRAWDAGVQVMIEGPGHVPLNQ IVTNIQLQKRLCHDAPFYVLGPLVTDVAAGWDHVACAIGGAIAATAGADFLCYVTPTE HLALPGPKDVYEGVITTRIAAHAADVARGRAQSVARDRQMAQARAAMDWETMMSLCLD PKTARAMREGSRPQEDEVCTMCGKFCAVRLMRDYLHPERKKV" misc_feature 227899..229170 /locus_tag="Deba_0206" /note="ThiC family; Region: ThiC; cl08031" /db_xref="CDD:195653" gene 229199..230008 /locus_tag="Deba_0207" /db_xref="GeneID:9492646" CDS 229199..230008 /locus_tag="Deba_0207" /EC_number="3.1.3.70" /note="COGs: COG3769 hydrolase (HAD superfamily); InterPro IPR013200:IPR006381:IPR006379; KEGG: rmr:Rmar_0501 mannosyl-3-phosphoglycerate phosphatase; PFAM: haloacid dehalogenase type 3; PRIAM: Mannosyl-3-phosphoglycerate phosphatase; SPTR: D0MEV3 Mannosyl-3-phosphoglycerate phosphatase; TIGRFAM: mannosyl-3-phosphoglycerate phosphatase family; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: mannosyl-3-phosphoglycerate phosphatase family; HAD-superfamily hydrolase, subfamily IIB; mannosyl-3-phosphoglycerate phosphatase" /codon_start=1 /transl_table=11 /product="mannosyl-3-phosphoglycerate phosphatase family" /protein_id="YP_003806178.1" /db_xref="GI:302341649" /db_xref="GeneID:9492646" /translation="MRLVVFSDLDGTLLDHHDYAWSAARPALSALRAAGGALVLCSSK TSAEMIALHGEMGLSEPLVAENGGGIFAPEAHPLAAGPGWRPAEAGWRVLALGLGIDE VRARLARFNGPFGARGFGQMSDAEVAGLTGLSPARAALARRRRFNEPLILPRPEEQAE SFIAAARAHGLAVTRGGRFFHLLGGGDKGAAVARLIDYYKGGAEEIRTMALGDAPNDA SMLRAVDWPVLLARPDGSHAAVDAPGLALQPLPGPRGWNRAVLAALEELAP" misc_feature 229199..229999 /locus_tag="Deba_0207" /note="mannosyl-3-phosphoglycerate phosphatase; Reviewed; Region: PRK00192" /db_xref="CDD:178922" misc_feature 229208..>229420 /locus_tag="Deba_0207" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature order(229220..229228,229322..229327) /locus_tag="Deba_0207" /note="active site" /db_xref="CDD:119389" misc_feature 229220..229237 /locus_tag="Deba_0207" /note="motif I; other site" /db_xref="CDD:119389" misc_feature 229322..229324 /locus_tag="Deba_0207" /note="motif II; other site" /db_xref="CDD:119389" gene 230005..231006 /locus_tag="Deba_0208" /db_xref="GeneID:9492647" CDS 230005..231006 /locus_tag="Deba_0208" /note="COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterProIPR013196:IPR004143:IPR008988:IPR004408:IPR 011991; KEGG: hmo:HM1_0663 biotin-[acetyl-CoA-carboxylase] ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; SPTR: C0CZ52 Putative uncharacterized protein; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: HTH domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; BirA biotin operon repressor domain" /codon_start=1 /transl_table=11 /product="biotin/acetyl-CoA-carboxylase ligase" /protein_id="YP_003806179.1" /db_xref="GI:302341650" /db_xref="GeneID:9492647" /translation="MSTPTSRVLKLLLEAQGPRSGQEMGRLLGCSRAAVGKAVANLRQ RGFAIEARPRAGYLLVAEPEAVLAERVEARLPEGCLGRPLLHYQTIDSTNLEARRLAE AGAAHGACLCAEHQSAGRGRLGRAWQAPVGASLLFSLLLRPVDLPVDLVFLLNNVVSL AVCRAVEGLCGLRAMVKWPNDVFLDGRKLVGVLTEFTCRADRIDHVVVGAGLNVNWSP EDLAMLPAPAASLLAASGRRWDRAVLLAAILRQADALYASLLAGQLEALRDEYQRQSL LLGRQVTIDDGGALVGGQVAGFEPDGALRLSTGPGRVRIVRHGDVSLKSIAGLEGRE" misc_feature 230005..230232 /locus_tag="Deba_0208" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 230020..230979 /locus_tag="Deba_0208" /note="bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional; Region: PRK11886" /db_xref="CDD:183359" misc_feature 230350..>230664 /locus_tag="Deba_0208" /note="Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057" /db_xref="CDD:187213" gene complement(231009..231503) /locus_tag="Deba_0209" /db_xref="GeneID:9492648" CDS complement(231009..231503) /locus_tag="Deba_0209" /note="InterPro IPR000182:IPR016181; KEGG: dol:Dole_1891 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: B6B805 histone deacetylase superfamily; PFAM: acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003806180.1" /db_xref="GI:302341651" /db_xref="GeneID:9492648" /translation="MAFAAPWREELARGDEELVRGLCLAAGNFSAEEVLVAVELVQER RAKGLASGYHFVFAAENDQCPGYACFGPIACTDACWDLYWIVVDPARQGRGLGRALMA QVERRVAELGGRRVYVETSSRQPYAATRRFYAGLGYRLAARMDDFYAPGDAKMVYCRD IARA" misc_feature complement(231147..231341) /locus_tag="Deba_0209" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(231210..231215,231243..231251)) /locus_tag="Deba_0209" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(231503..232525) /locus_tag="Deba_0210" /db_xref="GeneID:9492649" CDS complement(231503..232525) /locus_tag="Deba_0210" /note="COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095:IPR011761:IPR013816; KEGG: sfu:Sfum_0713 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase domain protein; SPTR: A0LG59 D-alanine--D-alanine ligase domain protein; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase" /codon_start=1 /transl_table=11 /product="D-alanine--D-alanine ligase domain protein" /protein_id="YP_003806181.1" /db_xref="GI:302341652" /db_xref="GeneID:9492649" /translation="MKVVVLHDMASPDAAPDLADNVVQASQVLAALGRLGHRAQGLAF GPEVDQTRQALEELRPDVVFNLVETPLGMARMIHLAPLLLERLRLRYTGAGARGMLLT SQKLLAKKAMRESNLPTPDWCGPRDDGLPFSPLRRYIVKSVWEHGSVGLDDHSIIKPL GRAAMRAAIAQRGKALGGDCFAEAYIDGREFNIAILAGSRGPEVLPPAEITFEGFQPG KPHIVGYRAKWVEDSHEYNHTPRRFDFEPRDAELLARLKAMSLRCWRLFGLRGWARVD FRVDRKGRPFILEVNANPCLADDAGFMAAARRAGLDQTIVVWRILGSASRGRRRGCAV EKTGLA" misc_feature complement(231554..232459) /locus_tag="Deba_0210" /note="D-alanine--D-alanine ligase; Region: D_ala_D_alaTIGR; TIGR01205" /db_xref="CDD:162248" misc_feature complement(231563..232111) /locus_tag="Deba_0210" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene complement(232543..233529) /locus_tag="Deba_0211" /db_xref="GeneID:9492650" CDS complement(232543..233529) /locus_tag="Deba_0211" /EC_number="6.3.2.4" /note="COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095:IPR011761:IPR013816; KEGG: sfu:Sfum_0712 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: A0LG58 D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase" /codon_start=1 /transl_table=11 /product="D-alanine--D-alanine ligase" /protein_id="YP_003806182.1" /db_xref="GI:302341653" /db_xref="GeneID:9492650" /translation="MLIGLTYDLRQDYLARGFEPEAVAEFDSPETIAAIEAALTRLGH QPRRVGGLPELMAALLAGQRWDLVFNIAEGLGGFGREAQVPAVLDYHGQAYVFSDPLT LSLTLHKAMAKRVVRDLGLATPDFAVIDDVAQLAEVSLAYPLFAKPVAEGTGRGVEAA GKVGDAAALAAVCQRLLARYGQPVLVEHFLPGREFTVGVLGTGSAARAVAVMEVILLA RAEAEVYSYHNKENCEGLVRYELADGPLAQACAALAVAAHRGLGCRDASRVDLRCDET GRPHFMEINPLAGLCPGHSDLPILCGLAGMGYDELIEAIVASALARRATVAA" misc_feature complement(232585..233433) /locus_tag="Deba_0211" /note="D-alanine--D-alanine ligase; Region: D_ala_D_alaTIGR; TIGR01205" /db_xref="CDD:162248" misc_feature complement(232585..233187) /locus_tag="Deba_0211" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene complement(233542..234834) /locus_tag="Deba_0212" /db_xref="GeneID:9492651" CDS complement(233542..234834) /locus_tag="Deba_0212" /EC_number="5.4.3.2" /note="COGs: COG1509 lysine 2 3-aminomutase; InterPro IPR007197:IPR003739; KEGG: sfu:Sfum_0711 lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM domain protein; PRIAM: lysine 2,3-aminomutase; SPTR: A0LG57 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: lysine-2,3-aminomutase; radical SAM superfamily; TIGRFAM: KamA family protein" /codon_start=1 /transl_table=11 /product="lysine 2,3-aminomutase YodO family protein" /protein_id="YP_003806183.1" /db_xref="GI:302341654" /db_xref="GeneID:9492651" /translation="MSQIAANSNQCEASTEDLDPPGRKSVPCPLPATPAVDWSTEAGH GFNPHQSSASAAFRRRFFPGVCAAQWNDWRWQVRNRLTNPQALERFFPLAQEERRAFE AVAGRLPMAITPYYLSLIDRQNPADPLRRAVVPTWMEAVVSPGESHDPLAEDADMAAP GLVHRYPDRVLLLATGFCSTYCRYCTRSRLVGGGGMHTGKRALERALAYIEATPAVRD VLISGGDPLTMADDRLEWLLSRLRAMRHVEIIRIGSKVPAVLPQRVTPALTRMLKKYH PLFISLHFMHPAELTVEAAKACARLADAGVPLGSQTVLLAGINDDVATMRALMQGLLR LRVRPYYLYQCDPICGSAHFRTPVAKGLEIVAGLRGHTTGYAVPTYVIDAPGGGGKVA LYPESVIGRQDEALLLRNYEGGQYAYPDNAHGPGRALC" misc_feature complement(233560..234648) /locus_tag="Deba_0212" /note="Lysine 2,3-aminomutase [Amino acid transport and metabolism]; Region: KamA; COG1509" /db_xref="CDD:31698" misc_feature complement(<233869..234312) /locus_tag="Deba_0212" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(233896..233898,233986..233988, 234070..234078,234160..234165,234169..234171, 234277..234285,234289..234291,234295..234297, 234301..234303)) /locus_tag="Deba_0212" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature complement(<233551..233736) /locus_tag="Deba_0212" /note="Lysine-2,3-aminomutase; Region: LAM_C; pfam12544" /db_xref="CDD:152978" gene complement(234925..235218) /locus_tag="Deba_0213" /db_xref="GeneID:9492652" CDS complement(234925..235218) /locus_tag="Deba_0213" /note="KEGG: dat:HRM2_13270 hypothetical protein; SPTR: C0Q8U8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806184.1" /db_xref="GI:302341655" /db_xref="GeneID:9492652" /translation="MNCACRTKETELTGLLIPVEWDRAGNVEVFAIASYDETVHRLLP GELRKEMMTLLRREVTVWGDLTESGGEPALKVKRFAQTNLARGRIFPVDGGPR" gene complement(235405..236100) /locus_tag="Deba_0214" /db_xref="GeneID:9492653" CDS complement(235405..236100) /locus_tag="Deba_0214" /note="KEGG: ter:Tery_1486 hypothetical protein; SPTR: Q115Q0 Putative uncharacterized protein; PFAM: Sulfotransferase family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806185.1" /db_xref="GI:302341656" /db_xref="GeneID:9492653" /translation="MHVPKAAGASFRRALAEHYGPEAGFGDYAEFMEDPRSLCHLDPE LAQRRAVGLVAGLPPRTTVIHGHFPADKYLLACPEAKRVIWLRHPVARLVSHYYFWLT SDRHGNLIHDHMLEHELDLPRFARLPVMRDFVSNNILKSMTIDDFDFVGLQERYPSDL ARLATALGWPERPAARADNKGRLPGYAQRLARLASDDDLIKQLARLNQRDMELYGRLA RSRNLPAPLNPFK" misc_feature complement(235456..236097) /locus_tag="Deba_0214" /note="Sulfotransferase family; Region: Sulfotransfer_2; cl12149" /db_xref="CDD:196358" gene complement(236308..237714) /locus_tag="Deba_0215" /db_xref="GeneID:9492654" CDS complement(236308..237714) /locus_tag="Deba_0215" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR011006:IPR009057:IPR 003593; KEGG: dde:Dde_3040 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: ATPase AAA; SPTR: Q30WW2 Two component transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806186.1" /db_xref="GI:302341657" /db_xref="GeneID:9492654" /translation="MKTVLVGTNDKNAQASIHACLSAVYSVAVTDTGPACLEAIGKRA FDIYFIDIDFIRQCLPPENQRDFAAGLRHFRNGHRNVPVVILAPPEAIRQAVEAVKAG AEDYLIYPVDVHEVELVLDNLRQSHKIQAELQFLRDSFWRVESRDLVRTRSPLMKAVY ERIESVASTKATVLLTGETGTGKSLIAKLIHSHSKRGSGPFISVHCGAIPENLVESEL FGHEKGSFTGAERRKLGKFELADRGTIFLDEIGTVSPNAQIKLLQVLQDGTFSRVGGE RTIAVDVRVVAASNVNLQELMEAGAFRGDLFYRLNVFQIELPPLRQRREDVGILARTF LERLNAEYGKNIGAIDATVMEALRNYAWPGNIRELENLLERAYILEKTDTLCATSFPA DLLALSSPAPGEEEAFELRLAEARQRAVNEVEQRYLIKQLTQKKGRVDRCAAQAGVTT RQYRYLMAKYGLRAKDFR" misc_feature complement(236311..237714) /locus_tag="Deba_0215" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature complement(237346..>237504) /locus_tag="Deba_0215" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cl09944" /db_xref="CDD:189206" misc_feature complement(order(237385..237390,237397..237399, 237454..237456)) /locus_tag="Deba_0215" /note="active site" /db_xref="CDD:29071" misc_feature complement(237382..237390) /locus_tag="Deba_0215" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(236782..237255) /locus_tag="Deba_0215" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(237163..237186) /locus_tag="Deba_0215" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(236845..236847,236971..236973, 237160..237183)) /locus_tag="Deba_0215" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(236968..236985) /locus_tag="Deba_0215" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(236788..236790) /locus_tag="Deba_0215" /note="arginine finger; other site" /db_xref="CDD:99707" gene 238094..239590 /locus_tag="Deba_0216" /db_xref="GeneID:9492655" CDS 238094..239590 /locus_tag="Deba_0216" /note="COGs: COG1215 glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dat:HRM2_22260 HasA; PFAM: glycosyl transferase family 2; SPTR: C0QEI2 HasA; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806187.1" /db_xref="GI:302341658" /db_xref="GeneID:9492655" /translation="MQEKLNVSLPDADATDTMDLMADEAAKEVTDRKSRAKVLLLKGV IVTALIGMLTGGVVLWDDIMLHMKGFVSTDLGGVFFILANVSGAVGLFSLIWRVVLTL MYKSEAPCSDDELPTITIVVPAYNEGSQVLKTLRSIAASDYPAAKMQLIAVDDGSKDD TWLWMKRASRELGERLDLRRLDRNSGKRRALYEGFMNSTGEILVTIDSDSEIAPDTLR HLITPFVREAQVGSVAGNVRVLNAHRGMIPKMMDVSFTFSFDFIRASQSQVNTVLTTP GALSAYRDSVVRPDLEGWLNQTFCGRPANIGEDRALTNLVLKAGYFVRFARKAVVYTE VPLGYKGLCRMLLRWARSNVRESLVMGRFVFTNFRKGGKLGGRINFLLQVFAMTVGEV LKISAVCTLVAYPLIMGGNFLVGAAMGGTVPALFYLLRHRNSNCLWGFPYCLFWVLTL SWISLYALVTPHRSSWLTRGLTEEHKAVAEQPDPWTVSVAASARTGLR" misc_feature 238325..239476 /locus_tag="Deba_0216" /note="Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: COG1215" /db_xref="CDD:31408" misc_feature 238451..239020 /locus_tag="Deba_0216" /note="CESA_like is the cellulose synthase superfamily; Region: CESA_like; cd06423" /db_xref="CDD:133045" misc_feature 238712..238720 /locus_tag="Deba_0216" /note="DXD motif; other site" /db_xref="CDD:133045" gene complement(239679..240683) /locus_tag="Deba_0217" /db_xref="GeneID:9492656" CDS complement(239679..240683) /locus_tag="Deba_0217" /note="COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321:IPR016117; KEGG: svi:Svir_29210 L-aminopeptidase/D-esterase; PFAM: peptidase S58 DmpA; SPTR: C7MWD0 L-aminopeptidase/D-esterase; PFAM: peptidase family S58" /codon_start=1 /transl_table=11 /product="peptidase S58 DmpA" /protein_id="YP_003806188.1" /db_xref="GI:302341659" /db_xref="GeneID:9492656" /translation="MIKPGRHNAITDVAGLLVGHHHDLSAASGVSVVICPQGAVGGVD VRGSAPGTRETDLLQPENLVRVVNAVALCGGSVYGLAAADGVVRWLAEKGWGFPLEGG QVAPIVPAAALYDLGRGASFVPPTGADWGRAACQAAGDGPVAMGAVGAGCGAMSGGIK GGLGTASAVLASGLTVGALVAVNSLGGVIDPASGRPWEIGRELDGEFGPQGRRAVQLP QAPPGQPGQNTTIGVVATDAAIDKAQAKKLAQMAQDGLARAIRPAHTMYDGDTIFCLG TGQKELPRQEGFFASPQALAITELGQAMADCLARAIVQAVLRAQPLAGMVAFAQLAER " misc_feature complement(239736..240656) /locus_tag="Deba_0217" /note="nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-; Region: nylC_like; cd02252" /db_xref="CDD:73148" misc_feature complement(order(239877..239882,239997..239999, 240135..240137,240141..240143,240342..240350)) /locus_tag="Deba_0217" /note="putative active site pocket [active]" /db_xref="CDD:73148" misc_feature complement(239997..240002) /locus_tag="Deba_0217" /note="cleavage site" /db_xref="CDD:73148" gene complement(240842..241183) /locus_tag="Deba_0218" /db_xref="GeneID:9492657" CDS complement(240842..241183) /locus_tag="Deba_0218" /note="KEGG: aav:Aave_2301 hypothetical protein; SPTR: A1TPJ0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806189.1" /db_xref="GI:302341660" /db_xref="GeneID:9492657" /translation="MPKILWCCALAVVTALCAAAPAQAHRPPVIIGGGWGFSVVLPGP YVPPPPVYYVPAPPPCPPPGYYAPYPPPAYYVPVPPPRRPYYYRPWGPPGYYHRPGPH HHPGPYGRARY" gene complement(241225..241761) /locus_tag="Deba_0219" /db_xref="GeneID:9492658" CDS complement(241225..241761) /locus_tag="Deba_0219" /note="KEGG: sfu:Sfum_3879 hypothetical protein; SPTR: A0LQ46 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806190.1" /db_xref="GI:302341661" /db_xref="GeneID:9492658" /translation="MPQKFIVTLAAALLTLAVAAPAAAQGGVDMYKLYKWWQSPEIIA QLSLSPEEIDSLENLNLELRRKIISQRNQIQQARVTLDSYFDQDPLDEEAIRQQFTQL AQAQSEVTLDKSRFLLEARKILGRDRFIELRNIYGGAQPGQPGPPAKPEPSPPTSGFN QPGDGYGQPAGNFNQPAN" misc_feature complement(241390..241629) /locus_tag="Deba_0219" /note="CpxP component of the bacterial Cpx-two-component system and related proteins; Region: CpxP_like; cl01482" /db_xref="CDD:197422" misc_feature complement(order(241399..241401,241408..241410, 241417..241422,241429..241431,241441..241443, 241453..241455,241465..241467,241474..241476, 241486..241488,241492..241494,241504..241509, 241516..241518,241528..241530)) /locus_tag="Deba_0219" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:197366" gene complement(241786..242457) /locus_tag="Deba_0220" /db_xref="GeneID:9492659" CDS complement(241786..242457) /locus_tag="Deba_0220" /note="KEGG: bbt:BBta_4129 hypothetical protein; SPTR: A8WY55 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806191.1" /db_xref="GI:302341662" /db_xref="GeneID:9492659" /translation="MRATEHIGEAEIIRAAVDQDGSSQIVRAHLAACGYCRAQVEALA ADLAALAPAAARVVKAPPRPPRLALARRKRQAERWLWPLRGLAAAAVAAAVALNLATP LQPPSQPAPVAPLAVAAPPAQAPAPLAQAAPPMEPTQAPARPAPAAPATLAQAAPPAD DLDEPLDLVGLAGQWTRSAPTEMYWQPEEPFDRFKRFVISGGMRQADQEFFEAAVSDV DEPRS" gene complement(242454..243062) /locus_tag="Deba_0221" /db_xref="GeneID:9492660" CDS complement(242454..243062) /locus_tag="Deba_0221" /note="COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627:IPR013249:IPR013325:IPR013324:IPR 002011:IPR000838:IPR014284; KEGG: sfu:Sfum_3877 ECF subfamily RNA polymerase sigma-24 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: A0LQ44 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_003806192.1" /db_xref="GI:302341663" /db_xref="GeneID:9492660" /translation="MNPQSDNAQSLDLAVALAQKAKGGDEFAFDKLVDMFWGDIYRMV YYRTQSDMDAEDIAQEAFIKAFDGLAQLRDASCFKAWLYSIAVNLVRDHHRRQGARRL LRPLEEHDEQTPAPAGRAGGPVLEDEVASKELWRMIAAFCRGLPGGEREAFTLHFLDG LGIKEVAQALGKSESAVKTQLYRAVAKLRGKPELLKALRGEA" misc_feature complement(242496..242981) /locus_tag="Deba_0221" /note="RNA polymerase sigma factor, sigma-70 family; Region: sigma70-ECF; TIGR02937" /db_xref="CDD:188259" misc_feature complement(242763..242969) /locus_tag="Deba_0221" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature complement(242496..242660) /locus_tag="Deba_0221" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature complement(order(242508..242510,242514..242519, 242523..242531,242535..242540,242544..242546, 242574..242579,242595..242597,242625..242627)) /locus_tag="Deba_0221" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene complement(243193..243915) /locus_tag="Deba_0222" /db_xref="GeneID:9492661" CDS complement(243193..243915) /locus_tag="Deba_0222" /note="COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148:IPR005900; KEGG: mrd:Mrad2831_2308 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; SPTR: B1LXU6 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase" /codon_start=1 /transl_table=11 /product="6-phosphogluconolactonase" /protein_id="YP_003806193.1" /db_xref="GI:302341664" /db_xref="GeneID:9492661" /translation="MGEWIFDTPEAVIRVSASRVVQVVRQATQARGVCTVALPGGGSP LSLFARLVQPPQVGEIPWEQVHLFWGDERCVPLDDPRSNAGQAKRLCEGGFTPPAANV HRIQGELGPDEAARQYDALLREFFQASGDEPPVFDLVILGMGADGHTASLYPGDAALN ETRRWAVGVCPPPQADPPVARVSLTLPVFNAARQALFFVMGQGKRQALQRVRAGDKSL PAALVQPVKEPVWILDEAIAKQ" misc_feature complement(243217..243816) /locus_tag="Deba_0222" /note="6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard...; Region: 6PGL; cd01400" /db_xref="CDD:73166" misc_feature complement(order(243304..243306,243373..243375, 243472..243474,243697..243699,243787..243792)) /locus_tag="Deba_0222" /note="putative active site [active]" /db_xref="CDD:73166" gene complement(243918..245462) /locus_tag="Deba_0223" /db_xref="GeneID:9492662" CDS complement(243918..245462) /locus_tag="Deba_0223" /EC_number="1.1.1.49" /note="COGs: COG0364 Glucose-6-phosphate 1-dehydrogenase; InterPro IPR001282:IPR016040; KEGG: drt:Dret_2487 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; PRIAM: Glucose-6-phosphate dehydrogenase; SPTR: C8X5S2 Glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal domain; Glucose-6-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate 1-dehydrogenase" /protein_id="YP_003806194.1" /db_xref="GI:302341665" /db_xref="GeneID:9492662" /translation="MTTSAPPWAGQIIQDGVGCHLEGAPDPCVVVIFGASGDLCHRKL MPALYDLFVNHGLQESLAVVGCARTAYDDDQFRELMAQAVAEAGLDLARWDAFARRLF YQPLTYDDPASFAPLRHRLEVIDRDCGGCGNRIYNLAIPPQLYADVARSLSAAGMNQS DGPGWLRLVVEKPFGDDLQSARQLNAALAEGFAEEQIFRIDHYLAKDTVQNLMLFRFA NAVFEPLWDRKYVDFVAITAAETLGVEHRAGYYEQAGVLRDMFQNHMLQLLALVAGEA PPNMDAERVRDEKIRLFRCLRPLPADNLDGTLVLGQYAAGRVAGQEVVAYRDEPGVAP GSLTPTFAALRVFVDNWRWQGVPFYLCSGKRLAKKRTSIDIQFKQVPHSLFRQALGEH ITSNRLSLGIQPEETITLSIQTKKPGPKLCLRTVGMGFDFRAGGEPMHDAYEKVLLDA MLGDHTLFWRQDGVELCWQWLEPLLRACEACADRGKRLHFYPAGGWGPPQARDVAPLL ADRNED" misc_feature complement(243960..245390) /locus_tag="Deba_0223" /note="glucose-6-phosphate 1-dehydrogenase; Validated; Region: PRK05722" /db_xref="CDD:180222" misc_feature complement(244830..245372) /locus_tag="Deba_0223" /note="Glucose-6-phosphate dehydrogenase, NAD binding domain; Region: G6PD_N; pfam00479" /db_xref="CDD:144172" misc_feature complement(243954..244826) /locus_tag="Deba_0223" /note="Glucose-6-phosphate dehydrogenase, C-terminal domain; Region: G6PD_C; pfam02781" /db_xref="CDD:190422" gene complement(245632..247632) /locus_tag="Deba_0224" /db_xref="GeneID:9492663" CDS complement(245632..247632) /locus_tag="Deba_0224" /note="COGs: COG0021 Transketolase; InterProIPR005474:IPR005475:IPR005476:IPR009014:IPR 005478:IPR015941; KEGG: pna:Pnap_4499 transketolase; PFAM: transketolase; transketolase; SPTR: A6C7Q1 Transketolase; TIGRFAM: transketolase; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast" /codon_start=1 /transl_table=11 /product="transketolase" /protein_id="YP_003806195.1" /db_xref="GI:302341666" /db_xref="GeneID:9492663" /translation="MFKVDSQLDRQAVSAISMLAADMVEKANSGHPGMPMGAAAMAHV LWSRFLRHNPADPSWPNRDRFVLSAGHGSALLYALLHLHGYDLSLDELKNFRQWESKT PGHPEYGQTPGVECTTGPLGMGLSMGVGMALAERFLAGQFNRPGHAVVDHHVYAIVSD GDLMEGVASEAASLAGTLGLGKLVYLYDDNHISIEGGTDLAFTEDAMARFAAYGWHVQ RVADGADLEAIAQAIQAAKDETGRPSIIAVRTHIGLGSPKQDQASAHGEPLGPEAMAV TRQKLGWSAEPFAVSDQARAYLGQSKAAGQALQAQWQEAFRAFAQAQPDLAAQFEAQI AGRLPLGFGGEVPTLGPADGKMATRAASGKVLNALAKRVPNLVGGSADLAPSTKTIIA GSGDMRPGQPPAGRNIHFGVREHGMAAIVNGMALHGGVIPYGATFFVFSDFCRPALRL AALQGCKSIFVFTHDSIGVGEDGPTHQPVEHLMSLRVMPGLRLIRPADYGETVGAWAC ALQGEGPTVIVLTRQGLPILDPALGAAEGVARGAYVVGNCDDEPRLILIGTGSELHLC LAAQKELAQRGVAARVVSMPSWDIFAAQEKAYRDHVLPPTVRARLAVEMGATLGWERW VGDGGAVIGLDRFGASAPGGVLQAKFGFTVENVVAKALELLN" misc_feature complement(245638..247620) /locus_tag="Deba_0224" /note="transketolase; Reviewed; Region: PRK05899" /db_xref="CDD:180309" misc_feature complement(246808..247590) /locus_tag="Deba_0224" /note="Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012" /db_xref="CDD:48175" misc_feature complement(order(246838..246840,247051..247053, 247057..247059,247063..247065,247138..247140, 247150..247155,247270..247272,247276..247278, 247420..247422)) /locus_tag="Deba_0224" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48175" misc_feature complement(order(247006..247008,247051..247056, 247102..247104,247114..247116,247123..247128, 247135..247146,247264..247266,247270..247275, 247312..247314,247318..247323,247345..247347)) /locus_tag="Deba_0224" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48175" misc_feature complement(246067..246555) /locus_tag="Deba_0224" /note="Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033" /db_xref="CDD:132916" misc_feature complement(order(246094..246096,246157..246162, 246208..246210,246217..246219,246292..246297, 246304..246306,246361..246369,246373..246378, 246385..246402,246406..246408,246415..246417, 246487..246489,246505..246507,246511..246513)) /locus_tag="Deba_0224" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature complement(order(246166..246168,246172..246177, 246181..246186,246211..246213,246217..246219, 246298..246300,246304..246309,246391..246399, 246406..246408,246487..246489)) /locus_tag="Deba_0224" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature complement(order(246304..246306,246313..246315, 246391..246393,246397..246399)) /locus_tag="Deba_0224" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132916" misc_feature complement(245662..245979) /locus_tag="Deba_0224" /note="Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780" /db_xref="CDD:145764" gene complement(247821..248012) /locus_tag="Deba_0225" /db_xref="GeneID:9492664" CDS complement(247821..248012) /locus_tag="Deba_0225" /note="KEGG: dol:Dole_2869 hypothetical protein; SPTR: A8ZYE7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806196.1" /db_xref="GI:302341667" /db_xref="GeneID:9492664" /translation="MADELTTPKHCPGFEANKGLKVFSCKCPNCGHANEIFSDEFDKP RKCSNCGTQIDFTKCVLDV" gene 248252..249604 /locus_tag="Deba_0226" /db_xref="GeneID:9492665" CDS 248252..249604 /locus_tag="Deba_0226" /note="COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: dae:Dtox_0718 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C8W1I7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1015)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806197.1" /db_xref="GI:302341668" /db_xref="GeneID:9492665" /translation="MAVVAPFRALRYNLDKIAGMEQVVTPPYDVINASQQDGFYNADP HNIIRLELNRKRDSDSAADNRYTRAAEHLQRWMQSGVLKRDEKPAFYVSRTTYQDPDG NERVRTGFFTLLRLEDFDAGVVLPHERTFTEHKEDRLALIKKTRANISPIFALFPDDQ NAVMGALQSAQAQAPDYDFIDPMGLRQQLHAVSDPAACASVRKLMADKVIFIADGHHR YETALNYRNHMRGQCPEAGLLASFNYVMVYLCSMSDPGLTVFACHRAVPRLDGFSAVD FMRHARQDFDELIIEAPGGLAANAPVLVEALAQAGRQRPSIGMACHDSDKLHILSLKP GAMDQEEGPDVFGPLRQLDVAVLTRMILEKILGLDNNARDMAHLISYNSDTRDTLAQV QSGQARVAFLLNPTKVEQVKAVAEAGLIMPRKSTYFYPKALTGLTLNLVLPDEDIAAC " misc_feature 248258..249571 /locus_tag="Deba_0226" /note="Protein of unknown function (DUF1015); Region: DUF1015; cl01715" /db_xref="CDD:194183" gene 249611..250357 /locus_tag="Deba_0227" /db_xref="GeneID:9492666" CDS 249611..250357 /locus_tag="Deba_0227" /note="COGs: COG4123 O-methyltransferase; InterPro IPR007848:IPR002052; KEGG: drt:Dret_0713 methyltransferase small; PFAM: methyltransferase small; SPTR: Q09D37 SAM-dependent methyltransferases; PFAM: methyltransferase small domain" /codon_start=1 /transl_table=11 /product="methyltransferase small" /protein_id="YP_003806198.1" /db_xref="GI:302341669" /db_xref="GeneID:9492666" /translation="MGENGGRPGAGEITRDALGRHVFYQPKSGYRFSIDSVLLAAFAT PTAGPVADLCAGCGVVGLLLAARGLAGPFLAVEIDPLAAHCCQLNQAHAGLDGQTIRA DLSQDHPALQPGGYKLVVCNPPFSQAGRGRASPDPARAKARTELALQPHDLWRQAARL LKRGDRLAFCWPASRLPQALAELGQHRLTPKRLRLIHGRLDAPAKTALIEAVKDGGQQ LSVHPPLIVHGPGQEYTPEVSAIYGDLGLF" misc_feature 249644..250354 /locus_tag="Deba_0227" /note="Predicted O-methyltransferase [General function prediction only]; Region: COG4123" /db_xref="CDD:33880" misc_feature 249719..>250111 /locus_tag="Deba_0227" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(250329..250784) /locus_tag="Deba_0228" /db_xref="GeneID:9492667" CDS complement(250329..250784) /locus_tag="Deba_0228" /note="InterPro IPR007922; KEGG: ppd:Ppro_1102 hypothetical protein; PFAM: protein of unknown function DUF721; SPTR: A1AN07 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF721)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806199.1" /db_xref="GI:302341670" /db_xref="GeneID:9492667" /translation="MSRPDKPKKLGQALAGALPGGVAARLPGPGLLAAWRAAVGPLVA SRGRPVRLDPDGALVVAVRGAAFRQELALAAPGLVAALAGLGVRSLKLIKARAAPPPP PPEPEPPPLSAGELAELEAMVAGVRDEKVRQALLAAMSAQFRTGPDRHR" gene 250989..253994 /locus_tag="Deba_0229" /db_xref="GeneID:9492668" CDS 250989..253994 /locus_tag="Deba_0229" /EC_number="6.3.5.3" /note="COGs: COG0046 phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR000728:IPR010918:IPR016188; KEGG: dal:Dalk_3288 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: B8FJ51 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase" /protein_id="YP_003806200.1" /db_xref="GI:302341671" /db_xref="GeneID:9492668" /translation="MASRLEIGLRPQLPDPAGAGLRARARAYLRLPVEEARVLRVLTF DTALDENQLDFVRQEVFTNPVTELSSFAPLAGQIMPAFDWALWVGLKPGVRDNEGATA IEGMADALGREFGPDEAVYASRLHLLRAPRLTRAGAEALCAELLANPIIQRWRVIGAA EWDSQNGVGLIIPRVELGRRPVVERIEARSDAELMELSDRRGLFLNPADLPAIRAYFD DPRVRAERAAVGLAGPTDVELEYISQARSDHCNHNTFTGRYAYRDLATGQSVEVDNLF KSCIKTPTEQLAAQKAWVVSVLWDNAGVARLDEQYNYAVTGETHNSPSNMEAYGGAIT GIVGVYRDPLGTGLGSKLAAGMWGFCVGPRDYDGDLRPLLHPRRLLDGLIDGVRDGGN KSGIPTALGTLIFDERYLGKCLVFVGAVGVMPREVAGRPSHLKAAGDGDLVIMCGGRV GADGIHGVTASSAGFSDNTPAGHVQIGDPYTQKKMHDFLLEARDEGLINFITDNGGGG LSSSIGESARSSRGAEVDLAKAPLKYQGLDPWQIWVSESQERMTVAVAPDNLPRFMSL SAKHGVESTVLGRYAATGKLKLTYGSEVCCYVDVDFLESGFPQWRFEAQWTPPALRGL VEPVLAAPIEADKLILELLASPNLCSRQWINRQFDHEVQGSSVIKPFVGPAQDVPSEA AVLLPRLDGRAGLAMAQVFLTEYGDIDTYDMVAAEIDEGLRRVTAVGGDPAQTGGMDN FCWPSIQYDPKNNPDGRYKAAQLVRACWALRDCCLTAGIPLLSGKDSMYVDGTIADRR GLRRRVSGPPTMMFTATAPVHDLAWCQTLEPKVAGDIVYVLGRTKDELGGGALYNHLG QVGLQAPKSDLAATKALCLAVHQGLKEGLLAAVCLPSRGGLALAWARMALAGGLGLEL DLDALDAPDDLGLLGRLFSESTGRLVVCVDPAKAAAFEALLADFSARAVGRVTKGKSL VITSGGQAVASLAIGKMRRQFTRRFGALV" misc_feature 251700..252782 /locus_tag="Deba_0229" /note="PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP...; Region: PurL_repeat1; cd02203" /db_xref="CDD:100034" misc_feature order(251922..251933,251937..251939,252012..252014, 252048..252050,252057..252059,252066..252068, 252192..252194,252225..252230,252240..252242) /locus_tag="Deba_0229" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100034" misc_feature order(252000..252002,252012..252014,252186..252194) /locus_tag="Deba_0229" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:100034" misc_feature 253029..253886 /locus_tag="Deba_0229" /note="AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal...; Region: PurM-like; cl10019" /db_xref="CDD:195948" misc_feature order(253068..253079,253083..253085,253158..253160, 253194..253196,253203..253205,253212..253214, 253341..253343,253410..253415,253425..253427) /locus_tag="Deba_0229" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100027" misc_feature order(253146..253148,253158..253160,253335..253343) /locus_tag="Deba_0229" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:100027" gene 253991..254824 /locus_tag="Deba_0230" /db_xref="GeneID:9492669" CDS 253991..254824 /locus_tag="Deba_0230" /EC_number="6.3.5.3" /note="COGs: COG0047 phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; InterPro IPR010075; KEGG: dol:Dole_0483 phosphoribosylformylglycinamidine synthase; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: A8ZTM9 phosphoribosylformylglycinamidine synthase" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase" /protein_id="YP_003806201.1" /db_xref="GI:302341672" /db_xref="GeneID:9492669" /translation="MSVRALVLSGYGVNCDWETAHVLALAGAQVRRAHISDLTGAPGL APCQTLDDQHIVVFAGGFAWGDDHGAGVLLANRLRNHLGEQMRRFLARGGLVLGICNG FQALVNFGLLPMLDGRWRRDAALAANDCGNFQDRWVELIFDPASPCVFTRGLERLEVP IRHGEGKFICGPETMAAIQAQGLAVTRYGDGQGRPAGGKWPANPNGAMDDIAGICDPS GRVFGLMPHPEAHYRLSQHPTWTAIRERARRQGRELDPMAEGPGMAIFHNAVAAAKAS L" misc_feature 254003..254800 /locus_tag="Deba_0230" /note="Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020" /db_xref="CDD:193615" misc_feature 254288..254290 /locus_tag="Deba_0230" /note="conserved cys residue [active]" /db_xref="CDD:153222" gene 254827..255864 /locus_tag="Deba_0231" /db_xref="GeneID:9492670" CDS 254827..255864 /locus_tag="Deba_0231" /note="COGs: COG3481 HD-superfamily hydrolase; InterPro IPR004365:IPR006674:IPR003607:IPR006675; KEGG: gsu:GSU1122 HD domain-containing protein; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region; SPTR: C6MSS8 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; OB-fold nucleic acid binding domain; TIGRFAM: uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_003806202.1" /db_xref="GI:302341673" /db_xref="GeneID:9492670" /translation="MSDQPAINQMSDGQIVRGSYLLLRKQIATSRGGKAYGALRLGDR GGEMEAKLWERAEELLAEPRVGMVVAISGRVEAFQGRPQLVLASIAVDPLASPADFLP ASPVPLAELWAAVDAARAKVKNKHLRRLLKTFFDEPAFRRVFELAPAAKAAHHAYAAG LLEHTAGVAGLAVAVAGRYPHLDAGLLICGALLHDVGKTRELSLGPPIDYTDEGRLEG HIAIGARLLDERLAKLPDFPAPAAAMIRHMILSHHGDYQFGSPRRPKTAEALALHMID DLDAKMAMLRAAAAEEPETGHWSRYHRLLERVVYAGPPVWDQPDQPVKTEAKAVDSAV MPGLFDMGEQS" misc_feature 254878..255093 /locus_tag="Deba_0231" /note="YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in...; Region: YhaM_OBF_like; cd04492" /db_xref="CDD:72964" misc_feature order(254890..254898,254938..254949,254953..254955, 254971..254979,254983..254985,255025..255027, 255046..255054,255073..255081) /locus_tag="Deba_0231" /note="generic binding surface I; other site" /db_xref="CDD:72964" misc_feature order(255028..255030,255034..255036,255040..255042) /locus_tag="Deba_0231" /note="generic binding surface II; other site" /db_xref="CDD:72964" misc_feature 255307..255642 /locus_tag="Deba_0231" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene 255861..256541 /locus_tag="Deba_0232" /db_xref="GeneID:9492671" CDS 255861..256541 /locus_tag="Deba_0232" /EC_number="2.7.4.9" /note="COGs: COG0125 Thymidylate kinase; InterPro IPR000062:IPR018095:IPR018094; KEGG: cyb:CYB_0832 thymidylate kinase; PFAM: thymidylate kinase; PRIAM: dTMP kinase; SPTR: Q2JN62 Thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase" /codon_start=1 /transl_table=11 /product="thymidylate kinase" /protein_id="YP_003806203.1" /db_xref="GI:302341674" /db_xref="GeneID:9492671" /translation="MSAKPAKTPRAPFITLEGGEGCGKSTQASMLGRRIRGLGLKVVL TREPGGASLGQTIRELLLGPGQEPVDPVTELLLFLADRSHHVRAKIEPALLRGEVVVC DRFADSSEVYQGLARGLGLERVRRLNQWVCGQCWPDLTLLLDLNPGLGLARAAQRQGE LGQGPSPMEKEKLEFHERLREGFLAQAQAEPGRIKPVDAARPAEEVAEAIWAHVEPLL REWRRCGL" misc_feature 255897..256517 /locus_tag="Deba_0232" /note="thymidylate kinase; Validated; Region: tmk; PRK00698" /db_xref="CDD:179089" misc_feature 255897..256505 /locus_tag="Deba_0232" /note="Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting...; Region: TMPK; cd01672" /db_xref="CDD:30190" misc_feature order(255933..255935,256092..256094,256104..256106, 256167..256172,256194..256196,256329..256331) /locus_tag="Deba_0232" /note="TMP-binding site; other site" /db_xref="CDD:30190" misc_feature order(255936..255938,256317..256319,256455..256457) /locus_tag="Deba_0232" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:30190" gene 256531..257580 /locus_tag="Deba_0233" /db_xref="GeneID:9492672" CDS 256531..257580 /locus_tag="Deba_0233" /note="COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: afw:Anae109_2451 DNA polymerase III, delta prime subunit; SPTR: A7HD56 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta' subunit" /codon_start=1 /transl_table=11 /product="DNA polymerase III, delta prime subunit" /protein_id="YP_003806204.1" /db_xref="GI:302341675" /db_xref="GeneID:9492672" /translation="MAFEGLLGQARVTAQLTAEMAAGKLAHAYLFCGPEGVGRATAAL ELFLALNCQGAADGGGLFGGAAQEDRPHPCRHCPACQRAQAWRHEELLLLQPPGEAAS SQIKVEDVREAMAAMRFAPLGGATRMLLIRQAQQMNATAANALLKTLEEPPPRNIIVL TVGDPRELLPTIVSRCRKVNFAPLTEETIRQALLARGLDQAQASLRAAMGGGSLGRAL CLDHEEQQRLLGRLRQALARPADALDDWALAEELVGQFRGAERIDRQGLADALDLLAL DLRDQAVGALGKPELRLLPGPAAAPAATPPALVAAFGRLRQAQQEILANASPELAVTV MLQEMRALAAGRAFD" misc_feature 256570..257181 /locus_tag="Deba_0233" /note="DNA polymerase III, delta' subunit; Region: holB; TIGR00678" /db_xref="CDD:161993" gene 257646..258854 /locus_tag="Deba_0234" /db_xref="GeneID:9492673" CDS 257646..258854 /locus_tag="Deba_0234" /note="COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: dal:Dalk_0025 PSP1 domain protein; PFAM: PSP1 domain protein; SPTR: B8FKC0 PSP1 domain protein; PFAM: PSP1 C-terminal conserved region" /codon_start=1 /transl_table=11 /product="PSP1 domain protein" /protein_id="YP_003806205.1" /db_xref="GI:302341676" /db_xref="GeneID:9492673" /translation="MGKVVGVRFHPGAKIYDFDSGHYVLAVGDKVVVETELGLVLGEV ARGPRVWPEQMQSADHPPLKKVHRLANEEDLAQLEQNRALEKEGMAFCRERISSQKLA MNLCKVECLFDRSKIIFYFTAETRQDFRELVRELVAKFRTRVEMRQIGVRHEAKLLGG LGGCGRELCCATFLGEFEPVSVKMAKEQNLSLNPTKISGLCGRLMCCLTYEYETYRYL RKGMPKLGKKIILADGREAKVVRQSVLERKLTVLTADGDEITMSPEELAGQLAKAQES IEGGDAPAGQTAHDEPDEHDAPEDEPEPEALADEAPADETPGDETPADEAPRGEADDV APARTDGQNRQRRQRPRRRGDGRANGKAPQRPTANGEPNAQQPNGEGAAKRPPRPRRR RKPAKPDDQG" misc_feature 257646..258446 /locus_tag="Deba_0234" /note="PSP1 C-terminal conserved region; Region: PSP1; cl00770" /db_xref="CDD:153984" gene 258857..260827 /locus_tag="Deba_0235" /db_xref="GeneID:9492674" CDS 258857..260827 /locus_tag="Deba_0235" /note="COGs: COG0143 Methionyl-tRNA synthetase; InterProIPR015413:IPR002547:IPR016027:IPR009080:IPR 002304:IPR004495:IPR014758:IPR014729:IPR012340; KEGG: dal:Dalk_0026 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; SPTR: B8FKC1 Methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, subunit beta; PFAM: tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="methionyl-tRNA synthetase" /protein_id="YP_003806206.1" /db_xref="GI:302341677" /db_xref="GeneID:9492674" /translation="MEATFYITTPIYYVNAEPHLGHAYTTIVADVARRFHLLLGQTAR MQTGTDEHGDKIAEAAAKNGLSPRQYADRVSGLFRDLWPHLHIQYDRFVRTTDPQHIQ TVRALLQKVHDQGDIYFAKYGGNYCVACERFLTDKELVEGKCPDHHTEPVYIEEENYF FRMGKYQQALIEHIQANPDFIRPERYKNEVLSMLAEPLDDLCISRPKSRLTWGVELPF DQNFVTYVWFDALINYITGLDYPNGDDFARFWPGQHLIAKDILKPHAIFWPTMLMAMG LPLYQRLNVHGYWNVDQAKMSKSLGNVVRPLELAQVYGVDAFRYFLLREMAFGLDAGF SEELLIQRYNADLANDLGNLYSRVLNMLVKYHNGVVPQPGPLTPADEELAQVAAQARD GLRQGFEAFAFHKGLARLWELIGAANKYVVANEPWALAAQPEQAPRLARVMHELVRTL AQVAVLIWPVMPEMAETMAGHMGLAHPARIGLAGLESDALTPAGTVIAKPATLFPRID TAGVQAKAHKAEVKAQAKQADAPPAKAPRAAKAEAGPAQQPIGIEDFGRVELRVGLIV EAAPVEGADKLLRLSVDLGEDAPRTIVAGIAKHYQPAALPGRRVVVVANLKPAKLRGV LSHGMCLAAVSPDGGLSLVDPGPEATPGSIVR" misc_feature 258857..260824 /locus_tag="Deba_0235" /note="methionyl-tRNA synthetase; Reviewed; Region: PRK12267" /db_xref="CDD:183389" misc_feature 258866..259858 /locus_tag="Deba_0235" /note="catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814" /db_xref="CDD:173907" misc_feature order(258884..258889,258893..258895,259004..259006, 259535..259537,259544..259549,259556..259558, 259634..259636,259646..259648) /locus_tag="Deba_0235" /note="active site" /db_xref="CDD:173907" misc_feature 258911..258922 /locus_tag="Deba_0235" /note="HIGH motif; other site" /db_xref="CDD:173907" misc_feature 259739..259753 /locus_tag="Deba_0235" /note="KMSKS motif; other site" /db_xref="CDD:173907" misc_feature 259883..260260 /locus_tag="Deba_0235" /note="Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957" /db_xref="CDD:153411" misc_feature order(259886..259888,259907..259912,259919..259924, 259931..259936,259943..259948,259955..259960, 260108..260113,260117..260122,260135..260137) /locus_tag="Deba_0235" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153411" misc_feature order(259907..259909,259919..259924,259931..259936, 259943..259948,259955..259960,260117..260119, 260135..260137) /locus_tag="Deba_0235" /note="anticodon binding site; other site" /db_xref="CDD:153411" misc_feature 260504..260824 /locus_tag="Deba_0235" /note="tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine...; Region: tRNA_bind_EcMetRS_like; cd02800" /db_xref="CDD:48402" misc_feature order(260507..260509,260651..260653,260699..260707, 260714..260716,260750..260755,260759..260764, 260780..260782,260786..260788,260792..260794, 260801..260803,260813..260824) /locus_tag="Deba_0235" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48402" misc_feature order(260582..260584,260621..260623,260699..260701, 260711..260713,260732..260734,260741..260743) /locus_tag="Deba_0235" /note="putative tRNA-binding site [nucleotide binding]; other site" /db_xref="CDD:48402" gene 261088..261786 /locus_tag="Deba_0236" /db_xref="GeneID:9492675" CDS 261088..261786 /locus_tag="Deba_0236" /note="InterPro IPR009875; KEGG: dde:Dde_2940 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: Q30X62 Putative uncharacterized protein; PFAM: PilZ domain" /codon_start=1 /transl_table=11 /product="type IV pilus assembly PilZ" /protein_id="YP_003806207.1" /db_xref="GI:302341678" /db_xref="GeneID:9492675" /translation="MDIEALINETDGLTKLEIALGDRLLLRLEAIEGFLKTDLVGLAQ DQYLIVDMPKGGPAIRNKFYEGTTVLVRYLHAGAIFAFQSNVLGTTDKPVKLVFLSYP QIVSRQELRREARMECYLSAAADLGQGQLINGAVLDISPSGCRFAAKFKGRPAVEIGG EVIIGMKLSDGEKARRCAGTLRSLSQSNGMAFLGVQFRDLDEDSALRIRALVATLGEY AAAKRSIAHLGQRD" misc_feature 261148..261393 /locus_tag="Deba_0236" /note="Flagellar protein YcgR; Region: YcgR_2; pfam12945" /db_xref="CDD:193418" misc_feature 261412..261726 /locus_tag="Deba_0236" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene complement(261863..262606) /locus_tag="Deba_0237" /db_xref="GeneID:9492676" CDS complement(261863..262606) /locus_tag="Deba_0237" /note="InterPro IPR008874; KEGG: lpf:plpl0013 hypothetical protein; PFAM: TraT complement resistance family protein; SPTR: Q5WRZ4 Putative uncharacterized protein; PFAM: Enterobacterial TraT complement resistance protein" /codon_start=1 /transl_table=11 /product="TraT complement resistance family protein" /protein_id="YP_003806208.1" /db_xref="GI:302341679" /db_xref="GeneID:9492676" /translation="MTQKAAKTLSLMAALVALALLAGCAATTTAIRYQDLKVETQMSD TVFLDPVPPEQRTVYVQVRNTSDQPSFNIQYEVSAAIAAKGYQVVYDPRQAHFWLMAN ILSVGQTDKSALELASGAGFGGAIAGAAAGALIARSGSELGGAAIGGIAAGAAEVIAG SMVKVNWFAVITDVEISEASNEGISEETQSNLRQGSSTMVRQSSARSTDRKRFRTRIA SSARQVNLTFPEAEPLLRQGLINSISGMF" misc_feature complement(261866..262504) /locus_tag="Deba_0237" /note="Enterobacterial TraT complement resistance protein; Region: TraT; cl05410" /db_xref="CDD:186656" gene complement(262946..263827) /locus_tag="Deba_0238" /db_xref="GeneID:9492677" CDS complement(262946..263827) /locus_tag="Deba_0238" /note="COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR000489:IPR011005; KEGG: dol:Dole_3182 dihydropteroate synthase DhpS; PFAM: dihydropteroate synthase DHPS; SPTR: A9A066 Dihydropteroate synthase DHPS; PFAM: Pterin binding enzyme" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase DHPS" /protein_id="YP_003806209.1" /db_xref="GI:302341680" /db_xref="GeneID:9492677" /translation="MKTIGENLNVIKKEIGQAFKDRNPEPIQRYALAEKAAGMDWIDI NLGPARKGGPELMEWVVKTVQEVVTDIPLALDTSNIEAIEAGLAAYKGDTVPLVNSVM ARPERYTVMLPMCAKYQADIVALLWGPEGLPRDENERASLCVELCYAANEAGLANEKL FVDPIITPLNIQQEQLMANLRFMAMLQDIVPGAKSTNGLSNCSNGTPWREPLNQIYMI MLERAGMYSSIVDYEDELLVAIAKGQRPDLVEVVHKVQDGEIKDPGDVSDETQKVFVK GAQALLGHILYSDSWFK" misc_feature complement(263111..263818) /locus_tag="Deba_0238" /note="Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a...; Region: Pterin_binding; cl00219" /db_xref="CDD:197403" misc_feature complement(order(263135..263137,263141..263143, 263222..263224,263234..263236,263339..263341, 263453..263455,263525..263527,263531..263533, 263600..263602,263801..263803)) /locus_tag="Deba_0238" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29544" misc_feature complement(order(263111..263113,263159..263161, 263171..263173,263183..263185,263291..263296)) /locus_tag="Deba_0238" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29544" misc_feature complement(263222..263230) /locus_tag="Deba_0238" /note="inhibitor binding site; inhibition site" /db_xref="CDD:29544" gene complement(263866..265209) /locus_tag="Deba_0239" /db_xref="GeneID:9492678" CDS complement(263866..265209) /locus_tag="Deba_0239" /note="COGs: COG1456 CO dehydrogenase/acetyl-CoA synthase subunit gamma (corrinoid Fe-S protein); InterPro IPR007202:IPR016041:IPR011005:IPR016218; KEGG: dal:Dalk_0682 acetyl-CoA decarbonylase/synthase complex subunit gamma; PFAM: CO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel; Fe-S cluster domain protein; SPTR: B8FJV9 CO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel; PFAM: Putative Fe-S cluster; CO dehydrogenase/acetyl-CoA synthase subunit delta" /codon_start=1 /transl_table=11 /product="CO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel" /protein_id="YP_003806210.1" /db_xref="GI:302341681" /db_xref="GeneID:9492678" /translation="MALTGIEIFKLLPKTNCGECGVPTCLAFAMNLAAGKAELDKCPY VSEEAREKLAAASAPPIRPVKYGSGDTASTVGGETVLFRHEKTFFNPCGLAGTLLDTD ADLVAKAKVWAGMQWERVGLNLRPGLVFLKCASNDAAKFEAAAKALCESTDLSLVLAC EDPAIMAPVAKALADKKPILYAATNQNADKMCAIAGETGCPLAVKAVDIDEAKDLTTE LTEAGLKDLLIDTGARDISGLLQDQIAVRRAALLKLDRTLGFPTIVFPGEMTDDPAMQ VAIAASMVAKYGGIIVLGELTAESVFPLLLERLNIYTDPQRPMTVTQGIFEINGPGPD SPVLVTTNFSLTYFIVSGEIESSRVPSWLLIKDTEGLSVLTAWAAGKFSGDDVGMFVK KCGIEEKINHKSLIIPGYAAAIVGDMEEELPGWNIKVGPREAAHLAKFLKEWKPE" misc_feature complement(263869..265209) /locus_tag="Deba_0239" /note="acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional; Region: PRK04165" /db_xref="CDD:179760" misc_feature complement(265075..265179) /locus_tag="Deba_0239" /note="Putative Fe-S cluster; Region: FeS; pfam04060" /db_xref="CDD:112857" gene complement(265291..267501) /locus_tag="Deba_0240" /db_xref="GeneID:9492679" CDS complement(265291..267501) /locus_tag="Deba_0240" /EC_number="2.3.1.169" /note="COGs: COG1614 CO dehydrogenase/acetyl-CoA synthase subunit beta; InterPro IPR004461:IPR011254:IPR016099; KEGG: dal:Dalk_0681 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; PFAM: CO dehydrogenase/acetyl-CoA synthase complex subunit beta; PRIAM: CO-methylating acetyl-CoA synthase; SPTR: B8FJV8 CO dehydrogenase/acetyl-CoA synthase complex, subunit beta; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase complex, subunit beta; PFAM: CO dehydrogenase/acetyl-CoA synthase complex subunit beta; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase complex, subunit beta" /codon_start=1 /transl_table=11 /product="CO dehydrogenase/acetyl-CoA synthase complex, subunit beta" /protein_id="YP_003806211.1" /db_xref="GI:302341682" /db_xref="GeneID:9492679" /translation="MSKLVAFAAIQGAYEIVTRVEGIYEKALEKYGPEQKLAFPNTAY YLPIIYSLLGIPVTDMATAGKALKVARKLLPAHVQNFNHLPYLGPLLDAGMAALFAEE VLEAIRYFEQPDFYTLGEECDPASGKIWLGAADDTILRKRGVEFVDGSAPGFAAIVGA APNAEIAKEIAEEYQRRSLYVFMAGNRMGTTFTEQLIEAGVQVGWNTRLVPFSPDISG AVFALGFANRAAMAFGGVKPGDYKKNLLYNKDRVFAFVNAFGEVNAEWAANAAGCVNW GFPTIADTDIPEILPTGVCTYEHVVGNIPHSEMVQKSVEVRGLKTIVTKVDIPLSYGA AFEGERVRKDDLFVEFGGKKQATELVEMAEMDEIEDNKIVVIGKEMDDVKKGDKLDLG IYVQVAGRKFQPDFEPILERQIHHLINYAQGVMHIGQRDISWIRLGQPAVEKGFKVRH IGQILHDMFHKEFGSILDKVQVTLYTDPKDVKAFTEKARAMYKARDSRVENMTDENEE IFYSCTLCQSFAPSHVCVVSPERTGLCGAYNWMDCKASFEINPTGPNQPIEKGECLDP KLGMWKGCNDFVAKASRGKISQYNFYSIVYEPMTTCGCCECIAALLPGCNGVMTVHRD YTGETPCGMKFTTLAGVMGGGQSSPGFVGHSKYNIIQRKYIAGDGGIKRMVWMPKSLK EELREGLLRRGEEVGVPDLIDKICDETIAIDEASVYEYLQKVGHPAVEMDPIVG" misc_feature complement(265297..267501) /locus_tag="Deba_0240" /note="bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed; Region: PRK09529" /db_xref="CDD:181932" misc_feature complement(266542..267477) /locus_tag="Deba_0240" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature complement(order(266707..266712,267457..267462, 267469..267474)) /locus_tag="Deba_0240" /note="ACS interaction site; other site" /db_xref="CDD:73219" misc_feature complement(order(266707..266715,267439..267441, 267448..267450,267460..267462,267469..267471)) /locus_tag="Deba_0240" /note="CODH interaction site; other site" /db_xref="CDD:73219" misc_feature complement(order(266707..266709,266713..266715, 266854..266856,266944..266946,267022..267024)) /locus_tag="Deba_0240" /note="metal cluster binding site [ion binding]; other site" /db_xref="CDD:73219" misc_feature complement(265300..266529) /locus_tag="Deba_0240" /note="CO dehydrogenase/acetyl-CoA synthase complex beta subunit; Region: CdhC; cl11685" /db_xref="CDD:187145" gene complement(267541..269607) /locus_tag="Deba_0241" /db_xref="GeneID:9492680" CDS complement(267541..269607) /locus_tag="Deba_0241" /EC_number="1.2.99.2" /note="COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterProIPR004137:IPR011254:IPR010047:IPR016101:IPR 016099; KEGG: dat:HRM2_16670 CdhA; PFAM: Prismane; PRIAM: carbon-monoxide dehydrogenase (acceptor); SPTR: C0QAX6 CdhA; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit" /codon_start=1 /transl_table=11 /product="carbon-monoxide dehydrogenase, catalytic subunit" /protein_id="YP_003806212.1" /db_xref="GI:302341683" /db_xref="GeneID:9492680" /translation="MSDQIKAKVAAAAEESASTKKADPKASSVDIATIQMLAKAQRDN VETIFDRAVSMKPCNIGEQGTCCKICSQGPCRLPLPKKGIEGKDTRKGLCGATPETIA ARNFARMVAAGAAAHSDHGRGVAEVFLTAARKGTHDYGIKDEQKLLEIAPDFEVPTTV IVDGPNGEKIEQMRDIYDIAEEVGVKALGQWGQQDGEIYNAKRAPKARYELWRKLDVV PRGIDREIVEIMHRTHMGVDQDYHNIVKQCTRAAIGDGWGGSMIATDLQDIMFGTPYP TQGEINLGVLKQDHVNIIVHGHEPLLSEMIVVASQLPDMVDYAKSKGAHGIVLAGMCC TANEILCRHGLPIAGNYLQQELAIVTGAVDAMVVDVQCIMENIANVADCYHTKIITTN PRAMIESGHTTHIEFDEHNALEDAKKIVKTAIDNFPNRHGEAMIPSAKEKMVVGFSYE AINYHLGGTFRGSYWPLNDNIINGRIRGIGGVVGCNNARSMHDSAHLTVVKELLKNDV IVLTTGCNAMACGKAGLLSPESAKVFCGPGLAEVCETVGIPPVLHMGSCVDNSRILMA ATQVVKAGGLGKDISDLPAAGSAPEWMSEKAISIGHYFVVSGVYTVFGVGLPVTGAPR FQKHLFEELEGIYGGMWDMIVDPYEHAQAMIRHIDKKRAALGLDKKKERVLMDMADRR QLEEVA" misc_feature complement(267607..269520) /locus_tag="Deba_0241" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature complement(267655..269412) /locus_tag="Deba_0241" /note="Prismane/CO dehydrogenase family; Region: Prismane; pfam03063" /db_xref="CDD:190514" misc_feature complement(order(267820..267825,269260..269265, 269272..269277,269281..269283)) /locus_tag="Deba_0241" /note="ACS interaction site; other site" /db_xref="CDD:73219" misc_feature complement(order(267820..267828,269242..269244, 269251..269253,269263..269265,269272..269274)) /locus_tag="Deba_0241" /note="CODH interaction site; other site" /db_xref="CDD:73219" misc_feature complement(order(267820..267822,267826..267828, 267937..267939,268063..268065,268153..268155)) /locus_tag="Deba_0241" /note="metal cluster binding site [ion binding]; other site" /db_xref="CDD:73219" gene complement(269808..269975) /locus_tag="Deba_0242" /db_xref="GeneID:9492681" CDS complement(269808..269975) /locus_tag="Deba_0242" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806213.1" /db_xref="GI:302341684" /db_xref="GeneID:9492681" /translation="MTTQTKKAEGNGAKRQGVVFGQPPEPGTAGPEATYIMKSLERFR LRGDGVLGKKK" gene complement(270147..271742) /locus_tag="Deba_0243" /db_xref="GeneID:9492682" CDS complement(270147..271742) /locus_tag="Deba_0243" /note="COGs: COG2069 CO dehydrogenase/acetyl-CoA synthase subunit delta (corrinoid Fe-S protein); InterPro IPR016041:IPR011005; KEGG: dol:Dole_3186 acetyl-CoA decarbonylase/synthase complex subunit delta; PFAM: CO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel; SPTR: A9A070 CO dehydrogenase/acetyl-CoA synthase subunit delta; PFAM: CO dehydrogenase/acetyl-CoA synthase subunit delta; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase, subunit delta" /codon_start=1 /transl_table=11 /product="CO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel" /protein_id="YP_003806214.1" /db_xref="GI:302341685" /db_xref="GeneID:9492682" /translation="MGFEVTKVDYSGKIREVAVGQGDKIAKIGGENCYPFHIFEGSMP NRPLVAMEVWDMEPTEWAEACAAPFKGVLGDPAAWAKKCVEEYGADAIVVQLKSTDPN GDDAPAEQASAVVGKVLGAVSVPVIVWGSANGAKDAVVLKKIAEDFEGKNLLLGPVEE SNHKQIGAACLAYKHQVISSSPIDVNLAKQLNILLGNLGVPLDRVVVDPTTGGLGYGM EYSYSVMERLRMAALLQDDDKLTMPMINNVGNEIWKSKEANIAGEEAAAANLGDNAKR GVFMEVAAATAYLLAGSDILILRHPDSVATVKKMIDGMMADRAPAAARVASDRPKAAL IPGAKAPAKPAAAAPAPKPAAAPAAKPAAAAPAAAAPAAAAAPAAAAAPAAAAAPAPA PAAAAPAAADAEARAKAEMEAKAKAEAAAKAEAEAKAKAEAAAKAAAEAEAKAKAEAE AKAEAAAKAAAEADLEALRRQRRDEREKMAAAMAQKEAREDKGEVYGEGIPVDVAGPD AVYVIKSLDRFRLRGDGVLSHRK" misc_feature complement(270798..271742) /locus_tag="Deba_0243" /note="acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional; Region: PRK04452" /db_xref="CDD:179852" gene complement(272030..272791) /locus_tag="Deba_0244" /db_xref="GeneID:9492683" CDS complement(272030..272791) /locus_tag="Deba_0244" /note="COGs: COG3640 CO dehydrogenase maturation factor; InterPro IPR002586:IPR014433; KEGG: dal:Dalk_1102 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: B8F959 Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_003806215.1" /db_xref="GI:302341686" /db_xref="GeneID:9492683" /translation="MAYTIAVAGKGGVGKTTVSGLLVRYLVEQGLKPVLAVDADSNSN LNEVLGLELNMTLGDAREDMKKGQSHGMTKNLFIEMRVNQCLEEAEGFDLIAMGRPEG AGCYCAANHLLTASMDQLAGNYRFLVVDNEAGMEHISRVTTQRVDLLLVVSDPSRRSM TAAARVAELAKEMGILAGDAFLILSMVRGELAPELSASAAEMGVELAGFIPDDEALAQ ADLQGRPTSKLPADNPAVKAAFAIFDKVIPAAWRQ" misc_feature complement(272333..272722) /locus_tag="Deba_0244" /note="The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible...; Region: CooC; cd02034" /db_xref="CDD:73297" misc_feature complement(272078..>272443) /locus_tag="Deba_0244" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene 273045..274418 /locus_tag="Deba_0245" /db_xref="GeneID:9492684" CDS 273045..274418 /locus_tag="Deba_0245" /note="COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR013317:IPR013159:IPR010921:IPR018312:IPR 003593:IPR001957:IPR020591; KEGG: hha:Hhal_1227 chromosomal replication initiation protein; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; ATPase AAA; SPTR: A1WWE0 Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein DnaA" /protein_id="YP_003806216.1" /db_xref="GI:302341687" /db_xref="GeneID:9492684" /translation="MQSDIGRPVLWEQVRQTMRGQVDHREFETWLAPLAMRLEADWAV ISAPNRFFVDWIKDHYLSQLEQVISQCAARPLRLRFETGNGPVPASRPVEAQPALAQP APAAPALTSLAQPTLKPGYTFETFIVGTCNELAHAACRAVAQQPGRQYNPLLIFGGAG LGKTHLLHAVGNAFYQRDPRAKVLYTTCEAFTNELIQAVRFDSIGRFQEKYRGLDCLL LDDIQFLAGRERTQEELFHTFNALQESGGQIVLTSDDPPRELQGVVKRLRTRFEGGLT ADLQPPPSEIMVAILQSKALAKGMDLSDQVAMFLARQPESNVRVLEGYLNRIIAVSRF QGVEVTLELARRVVGPLMAQRQVSVEEVLQTVAARYGVRVGELKSSRKTRDVTRPRQV AMFLARQLTGQSYPEIGRALGGKDHSTVVKGVKKIQGQMAREAALAEEIRTLERELLE GGETPVD" misc_feature 273072..274337 /locus_tag="Deba_0245" /note="chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149" /db_xref="CDD:178902" misc_feature 273075..>273299 /locus_tag="Deba_0245" /note="hypothetical protein; Validated; Region: PRK06672" /db_xref="CDD:180654" misc_feature 273438..273869 /locus_tag="Deba_0245" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 273513..273536 /locus_tag="Deba_0245" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(273516..273539,273702..273704,273801..273803) /locus_tag="Deba_0245" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 273690..273707 /locus_tag="Deba_0245" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 273840..273842 /locus_tag="Deba_0245" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 274119..274337 /locus_tag="Deba_0245" /note="C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571" /db_xref="CDD:119330" misc_feature order(274188..274190,274212..274217,274236..274238, 274254..274262,274287..274301,274308..274310, 274317..274322) /locus_tag="Deba_0245" /note="DnaA box-binding interface [nucleotide binding]; other site" /db_xref="CDD:119330" gene 274779..275891 /locus_tag="Deba_0246" /db_xref="GeneID:9492685" CDS 274779..275891 /locus_tag="Deba_0246" /EC_number="2.7.7.7" /note="COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: gur:Gura_0002 DNA polymerase III, subunit beta; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: A5GDX2 DNA polymerase III, subunit beta; TIGRFAM: DNA polymerase III, subunit beta; PFAM: DNA polymerase III subunit beta, C-terminal domain; DNA polymerase III subunit beta, N-terminal domain; DNA polymerase III subunit beta, central domain; TIGRFAM: DNA polymerase III, subunit beta" /codon_start=1 /transl_table=11 /product="DNA polymerase III, subunit beta" /protein_id="YP_003806217.1" /db_xref="GI:302341688" /db_xref="GeneID:9492685" /translation="MELTARKEDLARNLQKSQSVVEKRTSMPILSNVLLEAADGGLTV TATDLEISFQGSLEAKVNKPGRVTVPARKFYEIIKELPSDDVYLKEKENQHIHLTGGR ASYDLVGLSAADYPALPDIADLSCLEVDGDVLGEMIEKTIFSISQEDTRFNLAGLFVQ KRRRDDREILRMVSTDGHRLSLIDREIPGLAALDIAGGVIIPRKGVAEMRRLAEDGGL SLGLNASFAVVKKDGATLILRMQEGSFPDYEVVVPKNAGRVALVNRQAFGEVIRRVSI LATDRFQGVQLSFKEGLLELISQNPDLGEARETIEVDYEGESFTVGFNARYFLDLCGA MRSEVISLAFVDENNPCLIKGEGDEGFLSVIMPMRL" misc_feature 274779..275888 /locus_tag="Deba_0246" /note="DNA polymerase III subunit beta; Validated; Region: PRK05643" /db_xref="CDD:180180" misc_feature 274779..275885 /locus_tag="Deba_0246" /note="Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the...; Region: beta_clamp; cd00140" /db_xref="CDD:29053" misc_feature order(274848..274850,274992..274994,275013..275015, 275388..275390) /locus_tag="Deba_0246" /note="putative DNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29053" misc_feature order(274995..274997,275004..275006,275082..275084, 275088..275090,275604..275606,275697..275702) /locus_tag="Deba_0246" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29053" misc_feature order(275301..275303,275307..275318,275748..275750, 275874..275885) /locus_tag="Deba_0246" /note="beta-clamp/clamp loader binding surface; other site" /db_xref="CDD:29053" misc_feature order(275301..275303,275307..275312,275529..275531, 275634..275636,275673..275678,275757..275759, 275874..275885) /locus_tag="Deba_0246" /note="beta-clamp/translesion DNA polymerase binding surface; other site" /db_xref="CDD:29053" gene complement(275982..277106) /locus_tag="Deba_0247" /db_xref="GeneID:9492686" CDS complement(275982..277106) /locus_tag="Deba_0247" /note="COGs: COG0295 Cytidine deaminase; InterPro IPR001638:IPR002125:IPR016193; KEGG: dde:Dde_1459 cytidine deaminase; PFAM: extracellular solute-binding protein family 3; CMP/dCMP deaminase zinc-binding; SMART: extracellular solute-binding protein family 3; SPTR: Q311Y8 Cytidine deaminase; PFAM: Bacterial extracellular solute-binding proteins, family 3; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_003806218.1" /db_xref="GI:302341689" /db_xref="GeneID:9492686" /translation="MKKTIALLLAAILLTWAGPAIAGKREVIYAFDNAFPPFTYVEGG QPKGFEIDVLQQALEGSGFNLIMRPGPWDEIQRQLKAGNVQLSSGAAKTPQREKDLLF PDRPTCELDVRIFTAASSKIRTIADLDGRTVATQRGSLYQQLLAKKTKANLLLFDNEP QALQALNDGRADACVIAGRAGHFFIKNQGYKNISAVGTPIQVINIYYLIARDRPDLAR AISQGLAAIQQDGRFERIYRRWFVPKLEEKEIKSLIEAATKASRMAYAPYSKFQVGAA VLSGAGVIHSGANVENALYNLTATALTTAVLKAVSAGDTDIKAVVNVLPGGALAAPSA VDRQLIYEFNRGAQVIMRGPDGKIIQPTVAELIPYPFDMR" misc_feature complement(276384..277028) /locus_tag="Deba_0247" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature complement(276384..277028) /locus_tag="Deba_0247" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature complement(order(276576..276578,276687..276689, 276819..276821,276891..276893,277002..277004)) /locus_tag="Deba_0247" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature complement(order(276597..276599,276615..276617, 276627..276629)) /locus_tag="Deba_0247" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature complement(276483..276500) /locus_tag="Deba_0247" /note="hinge residues; other site" /db_xref="CDD:29040" misc_feature complement(276018..276341) /locus_tag="Deba_0247" /note="Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...; Region: cytidine_deaminase; cd01283" /db_xref="CDD:29826" misc_feature complement(order(276099..276101,276108..276110, 276201..276209,276234..276236,276240..276242, 276288..276290,276294..276296)) /locus_tag="Deba_0247" /note="active site" /db_xref="CDD:29826" misc_feature complement(order(276099..276101,276108..276113, 276201..276209)) /locus_tag="Deba_0247" /note="catalytic motif [active]" /db_xref="CDD:29826" misc_feature complement(order(276099..276101,276108..276110, 276201..276203,276207..276209)) /locus_tag="Deba_0247" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:29826" gene 277469..277672 /locus_tag="Deba_0248" /db_xref="GeneID:9492687" CDS 277469..277672 /locus_tag="Deba_0248" /note="SPTR: A6GIX3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806219.1" /db_xref="GI:302341690" /db_xref="GeneID:9492687" /translation="MAAECELLAKCGFFKKYAESKDLACRGFIRQYCRGDGQASCKRK EYRQKHGSAPSDDMMPSGQFMSA" gene complement(277742..278308) /locus_tag="Deba_0249" /db_xref="GeneID:9492688" CDS complement(277742..278308) /locus_tag="Deba_0249" /note="InterPro IPR012336:IPR012335; KEGG: gur:Gura_0192 hypothetical protein; SPTR: A5GDC9 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806220.1" /db_xref="GI:302341691" /db_xref="GeneID:9492688" /translation="MNSPEWNVNWRAAFEWAQQAGRPVLIDFHLPECVGCRMMEAETF PDRDVRATIDGHMTPLRVHADALPHSEDYGVRWTPWLVVAAADGRQLQAAAGFQPAAE LTPWLLLGLAKFEMLERRWLGALNHLERVISLHPKSAAAAEAVFLRGVAGYRQSAQAL HLKSAYRKLTEEYPTSVWAGRARPYKNF" misc_feature complement(<278123..278275) /locus_tag="Deba_0249" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:193797" misc_feature complement(<277760..>277939) /locus_tag="Deba_0249" /note="outer membrane assembly lipoprotein YfiO; Region: OM_YfiO; TIGR03302" /db_xref="CDD:188304" gene complement(278461..280929) /locus_tag="Deba_0250" /db_xref="GeneID:9492689" CDS complement(278461..280929) /locus_tag="Deba_0250" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003018:IPR013767:IPR003661:IPR 003594:IPR001789:IPR005467:IPR000014:IPR000700:IPR011006:I PR009082:IPR004358; KEGG: gur:Gura_2707 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; response regulator receiver; SPTR: A5G513 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003806221.1" /db_xref="GI:302341692" /db_xref="GeneID:9492689" /translation="MGAITAEGAARRLSQSPLPHFQTKVIDGLRQMVVFLDPHGKITW ANEAACKKAGLFLDSLIGNPCCRVWGQQSQRCAACPLSEAMARGVEMKSRLDLGDEGQ WESSLTPYFNEGGMLLGFAEVIAPYAPPLLDKFTHDLSFRALRCLCKSAQSIIAGESE AAIINQCCRIVVEEGGYHAAMIVYANQDQKRALSLMAFHGLDYFETNAIVKNLSWDDD KQSTSITAKAINSGGHQIVYDIAAMPNYQPWRDMLLKKGLRSCISLPLRDEAGRALGA LTVFAREPYSFSSEEAAILQNLADNLSYGVRIIRARREKAMLLSAMGQIAEGLVYVDK DGVIGYVNKAAEEISQFDKEELLGCHYSIIYPKRPGQGLPESLKQALKEGRPWSGRLT TSRKNGQTIVVEANISPVTNEIDKDTHYFLVGKDVTAQIALEARLRQAQKMEAIGTLS RGIAHDFNNILAAIMGFTEASLGRLDDRQALANNLGEVVTACERAQILVRQILSFSKP SERNRAPMKIKAVTDEVLNMLRATLPATVEVQANTDIESRVMADSTELHQVLMNICAN AGQAMPGGGVLRVSLSEQTVVDVEPLAGIHFTNARPGRFARIDIADTGHGMSQETMDR VFDPFFTTKQKAGGNGLGLSVAMGIVNSLGGAVTMRSKPGQGSVFSVFLPLTQEMPPE EKPYVVDQAPVGSETILLIDDEPQLVDATTMILEDLGYQVVGKTSPESALRDFNSSPE LFDLVITDMTMPGMTGEELARNFLNARPRLPVIILSGYHKRGPSPFGNLANLTYLDKP IRRLDLAQAIRRALSRADENLRAR" misc_feature complement(280558..280851) /locus_tag="Deba_0250" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(280558..280845) /locus_tag="Deba_0250" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(280636..280638,280639..280641, 280717..280728,280765..280767,280783..280785, 280795..280797)) /locus_tag="Deba_0250" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(280609..280611,280615..280617, 280687..280692,280699..280701,280723..280725, 280735..280737)) /locus_tag="Deba_0250" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(280021..>280263) /locus_tag="Deba_0250" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature complement(278881..279957) /locus_tag="Deba_0250" /note="Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852" /db_xref="CDD:33642" misc_feature complement(279649..279957) /locus_tag="Deba_0250" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(279736..279738,279751..279753, 279829..279840,279877..279879,279895..279897, 279907..279909)) /locus_tag="Deba_0250" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(279709..279711,279715..279717, 279799..279804,279811..279813,279835..279837, 279847..279849)) /locus_tag="Deba_0250" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(279409..279603) /locus_tag="Deba_0250" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(279424..279426,279436..279438, 279445..279447,279457..279459,279466..279468, 279478..279480,279529..279531,279538..279540, 279550..279552,279559..279561,279571..279573, 279583..279585)) /locus_tag="Deba_0250" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(279565..279567) /locus_tag="Deba_0250" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(278911..279264) /locus_tag="Deba_0250" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(278923..278925,278929..278934, 278947..278949,278953..278955,279001..279012, 279079..279084,279088..279090,279094..279096, 279100..279102,279223..279225,279232..279234, 279244..279246)) /locus_tag="Deba_0250" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(279232..279234) /locus_tag="Deba_0250" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(279004..279006,279010..279012, 279082..279084,279088..279090)) /locus_tag="Deba_0250" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(278476..278841) /locus_tag="Deba_0250" /note="FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784" /db_xref="CDD:31127" misc_feature complement(278494..278835) /locus_tag="Deba_0250" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(278536..278541,278548..278550, 278602..278604,278662..278664,278686..278688, 278821..278826)) /locus_tag="Deba_0250" /note="active site" /db_xref="CDD:29071" misc_feature complement(278686..278688) /locus_tag="Deba_0250" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(278662..278670,278674..278679)) /locus_tag="Deba_0250" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(278533..278541) /locus_tag="Deba_0250" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(281027..281314) /locus_tag="Deba_0251" /db_xref="GeneID:9492690" CDS complement(281027..281314) /locus_tag="Deba_0251" /note="KEGG: DHPS_1; dihydrodipicolinate synthase; SPTR: A4CF28 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806222.1" /db_xref="GI:302341693" /db_xref="GeneID:9492690" /translation="MTEEQFNPEIYQHVQTLLAKARQLCQLSGEYGDANEFVLRHGQD IKAVTDGLEAILPFWASMAESAGVSAELCDNVTRQLALIKHRLTTRAGSRH" gene complement(281340..281519) /locus_tag="Deba_0252" /db_xref="GeneID:9492691" CDS complement(281340..281519) /locus_tag="Deba_0252" /note="SPTR: Q4RUU3 Chromosome 12 SCAF14993, whole genome shotgun sequence" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806223.1" /db_xref="GI:302341694" /db_xref="GeneID:9492691" /translation="MTYEHVRAQLLEFIDGLSRQSACLADLEEACQQQPQAYDPRCAA HDVWRLAKSAPAAGR" gene complement(281538..281957) /locus_tag="Deba_0253" /db_xref="GeneID:9492692" CDS complement(281538..281957) /locus_tag="Deba_0253" /note="InterPro IPR002545; KEGG: dau:Daud_1560 CheW protein; SPTR: B1I533 Putative CheW protein; PFAM: CheW-like domain" /codon_start=1 /transl_table=11 /product="CheW protein" /protein_id="YP_003806224.1" /db_xref="GI:302341695" /db_xref="GeneID:9492692" /translation="MKSIGRQNANAIPVGKIVGIVRQADIWPLPGAPDYLAGLACLHG RLIPILDIDGRNLPAALDNDILARDIVIVENTMAGEATSLFGVIIDQWEKAGADYTPG SMHQPPADFPYAKVVAETAPRPDLRPGQTRGGKALAS" misc_feature complement(<281688..281927) /locus_tag="Deba_0253" /note="CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and...; Region: CheW_like; cl00256" /db_xref="CDD:185867" gene complement(282244..283665) /locus_tag="Deba_0254" /db_xref="GeneID:9492693" CDS complement(282244..283665) /locus_tag="Deba_0254" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR011006:IPR009057:IPR 003593; KEGG: dal:Dalk_0736 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; ATPase AAA; SPTR: Q74EW8 Sigma-54 dependent DNA-binding response regulator; PFAM: Response regulator receiver domain; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806225.1" /db_xref="GI:302341696" /db_xref="GeneID:9492693" /translation="MPRILVIDDDPAIGKLLFNHFEEMGYITHRVVTSEDALNIAAIE PYDVIFLDVRLPDGSGLDIIGQLKNTPGRPEVVIITGYGEPDGAELAITSGAWDYLEK PFKLKDVTLLLMRVIEHRERRQRNVSQNALKREGLVGQSPQIVNCLGQVFEAAQVDAS VLLFGETGTGKELFARAIHNNSRRADKPFLAVDCAALPETLAESVLFGHERGAFTGAH ASQEGMIAQANGGTLFLDEIGELSPAMQAKLLRVLQERVYRPVGGRRDLASDFRLVAA TNRQLEIMAEEGRFRTDLLFRLRAFPIDLPPLRTRKEDIKDICDYHIGRLCGHYAIEA KGFSRDFFEAIEGYDWPGNVRELVGALEYAIGAAFAEPILCPHHLPKNLRAKIAKQTI THRNNAHAEQEGQQTQELLTLELRLPPFRQWRVDHINRMEREYLGALIAQSEGDLRQA LELSELSRSRLYDLLAKHGMKLG" misc_feature complement(283342..283656) /locus_tag="Deba_0254" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(283315..283653) /locus_tag="Deba_0254" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(283357..283362,283369..283371, 283426..283428,283486..283488,283510..283512, 283639..283644)) /locus_tag="Deba_0254" /note="active site" /db_xref="CDD:29071" misc_feature complement(283510..283512) /locus_tag="Deba_0254" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(283486..283494,283498..283503)) /locus_tag="Deba_0254" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(283354..283362) /locus_tag="Deba_0254" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(282745..283191) /locus_tag="Deba_0254" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(282772..283188) /locus_tag="Deba_0254" /note="ATPases associated with a variety of cellular activities; Region: AAA; smart00382" /db_xref="CDD:128665" misc_feature complement(283150..283173) /locus_tag="Deba_0254" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(282832..282834,282958..282960, 283147..283170)) /locus_tag="Deba_0254" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(282955..282972) /locus_tag="Deba_0254" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(282775..282777) /locus_tag="Deba_0254" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(283813..286200) /locus_tag="Deba_0255" /db_xref="GeneID:9492694" CDS complement(283813..286200) /locus_tag="Deba_0255" /note="COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR013506:IPR006171:IPR002288:IPR 013760:IPR020568:IPR018522:IPR001241:IPR011557:IPR000565:I PR013759; KEGG: gsu:GSU0003 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: Q74H89 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; DNA gyrase, B subunit" /codon_start=1 /transl_table=11 /product="DNA gyrase, B subunit" /protein_id="YP_003806226.1" /db_xref="GI:302341697" /db_xref="GeneID:9492694" /translation="MTEDRTNYTADKIKVLEGLEAVRKRPAMYIGSTSVDGLHHLVYE VVDNSVDEAMAGFCENIRVVIHADNSVSVVDDGRGIPVDFHAHEGMSAVQVVMTKLHA GGKFDDKAYQVAGGLHGVGVSVVNALSQWLEVEISRDGKVYHQRYMRGKPVSELEVIG KTRRRGTKVTFKPDEEIFETTEYSYDILVARMRELAFLNRGLRIDLADERSDEEKSFH YKGGINEFVEYISRNSAPLHPKPIYLAGQKGMVQVEIALQYADSYKERLFSFANNINT KEGGTHLTGFKAALTRTINAYIANNFPKIKTPPSGDDAREGLFGVISVRIPQPQFEGQ TKMKLGNSEVKGLVEQIVNDQLATYFEENPAVARRVVDKVTEAARAREAARKARELVR RKGVLGEHSLPGKLADCSNRDATVCELFLVEGDSAGGSAKQARDRNFQAILPLKGKIL NVEKARFHKMIENAEIGTIITALGAGIGEEDFNLAKLRYHKIVIMTDADVDGSHIRTL ILTFFFRQMPELIEAGHLYIAQPPLYRIVDGKKENYIKDEQSLRSMLLERACAEATLE VPATGQSVSGLRLISHMNTVGAYLEALDRLRRRGYHTPALQAVLRVGARSRNIFSDQN RVKELSDSLAQHDLIIGDIPFDEEHSLYEIQVSCLGDAAKCAPISWELVSSADYARLH ALHQQLGGGDAGPFILRKNGEVSQIATIEGLLSRLLEDGAKGLGLQRYKGLGEMNPEQ LWQTTMDPERRTLLQVKVDDAIAADTMFATLMGDQVEPRKEFIIENALEARALDI" misc_feature complement(283816..286182) /locus_tag="Deba_0255" /note="DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939" /db_xref="CDD:184903" misc_feature complement(285790..286089) /locus_tag="Deba_0255" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(285835..285846,285961..285966, 285970..285972,285976..285978,285982..285984, 286048..286050,286057..286059,286069..286071)) /locus_tag="Deba_0255" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(286057..286059) /locus_tag="Deba_0255" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(285838..285840,285844..285846, 285964..285966,285970..285972)) /locus_tag="Deba_0255" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(285079..285540) /locus_tag="Deba_0255" /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are...; Region: TopoII_Trans_DNA_gyrase; cd00822" /db_xref="CDD:48467" misc_feature complement(285385..285387) /locus_tag="Deba_0255" /note="anchoring element; other site" /db_xref="CDD:48467" misc_feature complement(order(285199..285201,285205..285210, 285217..285219)) /locus_tag="Deba_0255" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48467" misc_feature complement(order(285193..285195,285199..285201)) /locus_tag="Deba_0255" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48467" misc_feature complement(284608..284952) /locus_tag="Deba_0255" /note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of...; Region: TOPRIM_TopoIIA_GyrB; cd03366" /db_xref="CDD:173786" misc_feature complement(order(284698..284700,284704..284706, 284710..284712,284920..284922,284929..284934)) /locus_tag="Deba_0255" /note="active site" /db_xref="CDD:173786" misc_feature complement(order(284710..284712,284932..284934)) /locus_tag="Deba_0255" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173786" misc_feature complement(283852..284034) /locus_tag="Deba_0255" /note="DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986" /db_xref="CDD:189792" gene 286715..287221 /locus_tag="Deba_0256" /db_xref="GeneID:9492695" CDS 286715..287221 /locus_tag="Deba_0256" /note="InterPro IPR000835:IPR011991; KEGG: cai:Caci_5835 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C3X2H5 Predicted protein" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator" /protein_id="YP_003806227.1" /db_xref="GI:302341698" /db_xref="GeneID:9492695" /translation="MTRLEQLPTGDRFELTENPTAISRAEEARAVLEMVLALGRRADK LLAMMAQEAELNTPAYNLLRLADHKGNAGMTVSEAAATVGIRPQALSGAVGEMVREGL LSRDVKSEDRRARILRITDEGRRRLAQTAPFRDSLVEMVVDQAPQLSVARQVLRTLEE AIVKATEK" misc_feature 286820..287200 /locus_tag="Deba_0256" /note="Transcriptional regulators [Transcription]; Region: MarR; COG1846" /db_xref="CDD:32031" misc_feature 286877..>287101 /locus_tag="Deba_0256" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(287307..288044) /locus_tag="Deba_0257" /db_xref="GeneID:9492696" CDS complement(287307..288044) /locus_tag="Deba_0257" /note="InterPro IPR006342; KEGG: mlb:MLBr_02346 hypothetical protein; SPTR: B9YTU9 methyltransferase FkbM family; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family" /codon_start=1 /transl_table=11 /product="methyltransferase FkbM family" /protein_id="YP_003806228.1" /db_xref="GI:302341699" /db_xref="GeneID:9492696" /translation="MEHAVLQNDLIIDVGLHKGMDTEFYLKKGFRVAAVEANPAMVEL VSERLAAHIDSGRLKIYNVGIYDSEGVFDFYVNKDKDDWSSVYKTVGARQNTAYEVIK VNFVRFGKILAETGIPYYLKIDIEHADILALSELNNFDVKPKYVSCEAHSIDIFFEMR KLGYQKFKLVNQRTHHKHPLPNPPLEGLYVDEKFTGIHSGPFGEETHGPWMTIEEAIY EWLHKRLGFVERSTLGDGWYDVHATFE" misc_feature complement(287646..288014) /locus_tag="Deba_0257" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 288246..289448 /locus_tag="Deba_0258" /db_xref="GeneID:9492697" CDS 288246..289448 /locus_tag="Deba_0258" /EC_number="2.3.1.9" /note="COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: dol:Dole_2160 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: C0GEG4 Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_003806229.1" /db_xref="GI:302341700" /db_xref="GeneID:9492697" /translation="MKNNRDTVIVAMGRTAIGDFGGSLAGLRAHELAAIVTKNLLDKT GLDPAMFDDVLMGDCCQCPDEANTARTAALKAGIPVDVPAMTIQRQCSSAMQALAQAE VYIRAGEAEVMLAGGVESMSNAPYTLPKARWGARLQHAKMVDALWEMLHSGSTLLEPP GYIMGQTAENLARKYDVSRQEQDIVALRSHNNAEAAIKAGKFKDEIVPVPVPQRKGEP KIVDTDEHVRMGLTMADLDKLRPAFAKDGTVTAGNASGLNDGAALCIVMSREKAKDLG LTPIAKIVGHAAAGCPPEIMGWGPVPSTQKVMKKLGMNLKDIELIELNEAFAAQYLAC EKGLGLNRDIVNVNGSGIGLGHPVGCTGARIVISLIGEMKRRGATVGLATLCVGGGMG MSMVVEVE" misc_feature 288255..289403 /locus_tag="Deba_0258" /note="putative acyltransferase; Provisional; Region: PRK05790" /db_xref="CDD:180261" misc_feature 288267..289403 /locus_tag="Deba_0258" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(288321..288323,288402..288404,288444..288446, 288453..288455,288465..288467,288498..288509, 288531..288533,288552..288557,288564..288566, 288609..288611,289101..289103,289107..289109, 289113..289115,289173..289175) /locus_tag="Deba_0258" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(288516..288518,289311..289313,289401..289403) /locus_tag="Deba_0258" /note="active site" /db_xref="CDD:29411" gene 289594..290979 /locus_tag="Deba_0259" /db_xref="GeneID:9492698" CDS 289594..290979 /locus_tag="Deba_0259" /note="COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: pag:PLES_58831 GGDEF domain protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: A3WM11 Signaling protein with a sensor domain and GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_003806230.1" /db_xref="GI:302341701" /db_xref="GeneID:9492698" /translation="MVDTGAKSAEAAKLRQRVRDLTDELDSIEAKHAEAMAALREAVP VLCGLAPKQQSPLVAKALEALRRAADKNADDANLRQALEALKSAIVAEPRDYGPGASA KAKESAQSEAARHVSLALLHGLRLGDEAFDARLDKAIDAIGGHVAAGAVRPAMAILVD LLDEFRLAHGKRLEAAERALKEVVGEVLTTEAELMATFSRAADDLASGSAAHANNLTA ALAGLLEDINHAPDLETMKTRAIGHIRAMREQIKNRREQELTQQAQVLSEMSRVRAAL DETKAHVSAVEHISQRLAHEALTDPLTKVWNKRALAQRLAEALEKHDPLVVCLIVFDI DFFKSINDNFGHRAGDKALESIAAHAARTLRRDDDLFRYAGDEFVILMTNIDLKTAHA VAERVRAAAEKIRFTYAGKGEIRLTLSLGLANGRQGDSAASLFERADQALLDAKRQGR NRVVVAGNSVG" misc_feature 290485..290955 /locus_tag="Deba_0259" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(290590..290592,290719..290721) /locus_tag="Deba_0259" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(290605..290607,290614..290619,290629..290631, 290641..290643,290707..290709,290713..290724) /locus_tag="Deba_0259" /note="active site" /db_xref="CDD:143635" misc_feature order(290695..290697,290779..290781) /locus_tag="Deba_0259" /note="I-site; other site" /db_xref="CDD:143635" gene complement(292378..293820) /locus_tag="Deba_0260" /db_xref="GeneID:9492699" CDS complement(292378..293820) /locus_tag="Deba_0260" /note="COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: pca:Pcar_0019 hypothetical protein; PFAM: protein of unknown function UPF0027; SPTR: Q3A8L0 Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0027" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806231.1" /db_xref="GI:302341702" /db_xref="GeneID:9492699" /translation="MADQPALQRLDAHRWLLPRQGKMRTDGLIFSDDELIGAVRADGT LQQVQAMAALPGIVGPAMAMPDAHQGYGFPIGGVAAFDPHAGVVSPGGVGYDINCGVR LLRSKLVAADLNHQQLTRLADALAAQIPAGVGQGGAKRLDDRQLDRVLTQGAAWAVNN GHGQATDLEFCESNGQIPLADPDQVSTHARNRGRDQLGTLGAGNHFVELGVVELVADA DAAQAFGLFPGQLVLWIHSGSRGLGHQVCDDYLKRLRQDKDAVHSPDSQLIAASPHSP VGQSYLAAMAASANFAFANRQMLTHLARQAIGQTLQISPANLGLALVYDVAHNIAKLE THTVHNRQRQLWVHRKGATRALGPNHPELPPRYAAIGQPVLTPGDMGRASYVLKGSHL AETLTFASSAHGAGRRLSRAKAKHNAKGRDISAELAQTNVIVRAKARATLAEEMPDAY KNVNNIAAIMQNSGVAPIVAKTRPLVCIKG" misc_feature complement(292381..293751) /locus_tag="Deba_0260" /note="Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a...; Region: Hint; cl12032" /db_xref="CDD:196309" misc_feature complement(292381..293688) /locus_tag="Deba_0260" /note="hypothetical protein; Reviewed; Region: PRK09588" /db_xref="CDD:181972" gene complement(293839..294663) /locus_tag="Deba_0261" /db_xref="GeneID:9492700" CDS complement(293839..294663) /locus_tag="Deba_0261" /note="COGs: COG0778 Nitroreductase; InterPro IPR001450:IPR000415:IPR017896:IPR017900; KEGG: dol:Dole_1688 nitroreductase; PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A9A0J2 Nitroreductase; PFAM: Nitroreductase family" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_003806232.1" /db_xref="GI:302341703" /db_xref="GeneID:9492700" /translation="MGLLIVDEDKCKQDNLCVADCPVQIMHMPEGGYPQVIAGAEAFC IACGHCVAVCPFGAISHPQVKSEDCPPIVKENAVSQAQAKQFLRSRRSIRQFKKDASA SRAELEQLMDMARYAQTGHNSQSIHWKIYTKPADVHDVAAGVAAWMERLVEKNDPMAQ MMNMAVIVKAFKNGVDFIMRGAPHLAVCHAHAEDRFADRSADIALTYLELYAPTLGLG TCWAGYFQAAALFWPPLQALLDLPEGHVVKAGLMIGKPNVKYFRCPERKPLRAQWV" misc_feature complement(<294484..294663) /locus_tag="Deba_0261" /note="Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]; Region: COG1245" /db_xref="CDD:31438" misc_feature complement(294484..>294534) /locus_tag="Deba_0261" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature complement(293845..294408) /locus_tag="Deba_0261" /note="Nitroreductase family. Members of this family utilize FMN as a cofactor. This family is involved in the reduction of flavin or nitroaromatic compounds by using NAD(P)H as electron donor in a obligatory two-electron transfer. Nitrogenase is homodimer...; Region: NADH_nitroreductase; cd02143" /db_xref="CDD:73306" misc_feature complement(order(293992..293997,294301..294303, 294382..294384,294388..294390,294394..294396)) /locus_tag="Deba_0261" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:73306" gene complement(294690..295724) /locus_tag="Deba_0262" /db_xref="GeneID:9492701" CDS complement(294690..295724) /locus_tag="Deba_0262" /EC_number="1.1.1.94" /note="COGs: COG0240 glycerol-3-phosphate dehydrogenase; InterProIPR011128:IPR006109:IPR008927:IPR016040:IPR 006168:IPR013328; KEGG: gem:GM21_0007 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; SPTR: C6E7R1 glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus" /codon_start=1 /transl_table=11 /product="NAD-dependent glycerol-3-phosphate dehydrogenase domain protein" /protein_id="YP_003806233.1" /db_xref="GI:302341704" /db_xref="GeneID:9492701" /translation="MNKPLALEAAVIGAGAWGSALAQQLAWAGQKVRLWALEPEVARQ VNDLRENKLYLEGVMLDPAIVATNDLAQAVAGARLVVMVTPSHVFRQVLGQLAPHLEK DAIIVSCSKGIEDQSGYTMCEVAEDVLDKRYHRRLTALSGPSFAKEVARAVPTAVTVA GRDPDVANLVQHAFATTLFRVYTSPDTVGVEIGGAVKNPLAIASGMVAGLELGYNSQA AMITRGLAEMTRLAMARGGQLATLSGLAGLGDLVLTCTGNLSRNRTVGKRLAQGETIA QIQASTRTVAEGVKNTLTVLQIAKRAGVEMPIVQAVKKVIYDGLPPADALLELMTRSL KQEHYWVADS" misc_feature complement(294729..295697) /locus_tag="Deba_0262" /note="NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated; Region: gpsA; PRK00094" /db_xref="CDD:178859" misc_feature complement(295221..295697) /locus_tag="Deba_0262" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(294738..295172) /locus_tag="Deba_0262" /note="NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479" /db_xref="CDD:116100" gene complement(295717..298221) /locus_tag="Deba_0263" /db_xref="GeneID:9492702" CDS complement(295717..298221) /locus_tag="Deba_0263" /EC_number="5.99.1.3" /note="COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterProIPR002205:IPR006691:IPR013760:IPR005743:IPR 013758:IPR013757; KEGG: pca:Pcar_0005 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: Q3A8M4 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit" /codon_start=1 /transl_table=11 /product="DNA gyrase, A subunit" /protein_id="YP_003806234.1" /db_xref="GI:302341705" /db_xref="GeneID:9492702" /translation="MLPKDARKEDVRIEEEIRRSYLDYAMSVIVGRALPDARDGLKPV HRRILFAMRELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDALVRMAQDFAMRYTL VDGQGNFGSVDGDAAAAMRYTEVRMAKLANELLADIDKDTVDFTDNYDGSLKEPVVLP TKAPALLINGSSGIAVGMATNIPPHNLGEVARALVALLDNPDIGVRELMRHVPGPDFP TRGFIHGAEGIEQAYRDGRGSIQIRAKANIETVARTKKTSIIVTELPYQVNKARLLEK VAELVKDKKIEGISDLRDESDRDGMRVVFDLRRDAVPQVVLNQLFKFTQMQTTFGINM LAIDRGRPRLMGLKDVLELFIEHRREIVLRRTAFDLAKAEARAHILEGLRIALDNLDE VIELIRAAKNPAEAKDGLMSRFSLSEKQAQAILEMRLQRLTGLERDKIMAEYREVIKE IARLRHILESDEEVRRIIREETLLLAEEFGDKRRTEIVGRVSDIELEDMIAEEEMVVT LSHGGYIKRTPTSLYRAQRRGGKGSRGMATKDEDFVEDLFTASTHSYLLIFTDAGRLY WLKVHEIPQAGRASRGKAIVNLVQMLPDESVSTVLAVREFVEGRQVIMATQKGVIKKT ELMSFSRPRAGGIIAINLAEGDHLVSARLTDGEMEVFLATRQGQAIRFHESQVRSMGR AAAGVKGIDVEHDDQVVAMEAVAGAPTMLTITENGFGKRTRMDEYPARNRAGKGVITI KTTTRNGHVVSALVVGDDDEVMLITDVGKVIRMKVGGISVIGRNTQGVKLIDLEPGER LVAVARLAEPGDDEVEAGELPDEDDEIVAGPEPEDE" misc_feature complement(295798..298203) /locus_tag="Deba_0263" /note="DNA gyrase subunit A; Validated; Region: PRK05560" /db_xref="CDD:180128" misc_feature complement(296809..298134) /locus_tag="Deba_0263" /note="DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in...; Region: TOP4c; cd00187" /db_xref="CDD:29149" misc_feature complement(order(297745..297747,297754..297825, 297829..297885,297889..298038,298051..298134)) /locus_tag="Deba_0263" /note="CAP-like domain; other site" /db_xref="CDD:29149" misc_feature complement(297856..297858) /locus_tag="Deba_0263" /note="Active site [active]" /db_xref="CDD:29149" misc_feature complement(order(296908..296958,296998..297003, 297034..297045,297052..297060)) /locus_tag="Deba_0263" /note="primary dimer interface [polypeptide binding]; other site" /db_xref="CDD:29149" misc_feature complement(296569..296712) /locus_tag="Deba_0263" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(296410..296559) /locus_tag="Deba_0263" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(296257..296391) /locus_tag="Deba_0263" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(296110..296247) /locus_tag="Deba_0263" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(295957..296091) /locus_tag="Deba_0263" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(295810..295947) /locus_tag="Deba_0263" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" gene 298451..299116 /locus_tag="Deba_0264" /db_xref="GeneID:9492703" CDS 298451..299116 /locus_tag="Deba_0264" /note="COGs: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; InterPro IPR004435; KEGG: ppd:Ppro_0305 molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; SPTR: Q1NJ69 Molybdopterin-guanine dinucleotide biosynthesis MobB region; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB" /codon_start=1 /transl_table=11 /product="molybdopterin-guanine dinucleotide biosynthesis protein B" /protein_id="YP_003806235.1" /db_xref="GI:302341706" /db_xref="GeneID:9492703" /translation="MVPLIAFCGASGSGKTTLLEKVLAELSARGLAVGALKHHGHGGA VVEPAVLAGKDSARLAASGARRVMLCHPGGLSISADASHAALDLPALASRFFYDLDLA LAEGFKTAAVDKIEVVAPGAQPLLPSGGQLLALARRGGAGREGDLPVLDADDAVAVAD FCLAAIRRRQRPGPSTVRARVGGAELGLNAFSQRVIAGALRGLLAGFKGGDAPGPIEV IID" misc_feature 298457..>298834 /locus_tag="Deba_0264" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature <298970..299113 /locus_tag="Deba_0264" /note="putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional; Region: PRK14494" /db_xref="CDD:184709" gene 299109..299699 /locus_tag="Deba_0265" /db_xref="GeneID:9492704" CDS 299109..299699 /locus_tag="Deba_0265" /note="InterPro IPR006674; KEGG: dps:DP1279 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: Q6ANR6 Putative uncharacterized protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_003806236.1" /db_xref="GI:302341707" /db_xref="GeneID:9492704" /translation="MTDELFQPITADTPLPSLAEIMAMWEAHAMLDNIRAHSRVVRDV ALRVADWLVAGGLRLNLPAIEAGALLHDIAKTPCLGSDRRHDIEGALMVAQAGYPALS WLVRYHVRLPKDHPIDESAVINYADKRVRHDEVVSLDLRYDYFIEHYGRGVPEYLERI EQGRLKAHRAEARLFSLMKDNHRPEEITRLWREGAL" gene 299696..300660 /locus_tag="Deba_0266" /pseudo /db_xref="GeneID:9492705" gene 300715..300879 /locus_tag="Deba_0267" /db_xref="GeneID:9492706" CDS 300715..300879 /locus_tag="Deba_0267" /note="KEGG: dba:Dbac_2024 hypothetical protein; SPTR: C7LNE1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806237.1" /db_xref="GI:302341708" /db_xref="GeneID:9492706" /translation="MGKKALLLIVAICLALAPLAACQSMGKATGTAVKSVEKGGEDFQ KGYEEGKSGN" gene complement(300917..302308) /locus_tag="Deba_0268" /db_xref="GeneID:9492707" CDS complement(300917..302308) /locus_tag="Deba_0268" /EC_number="2.1.1.74" /note="COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; InterPro IPR002218:IPR004417:IPR013027:IPR016040; KEGG: geo:Geob_1561 gid protein; PFAM: glucose-inhibited division protein A; PRIAM:methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); SPTR: Q1NQ71 Gid protein; TIGRFAM: gid protein; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase" /codon_start=1 /transl_table=11 /product="gid protein" /protein_id="YP_003806238.1" /db_xref="GI:302341709" /db_xref="GeneID:9492707" /translation="MAGAELAGRPGLWYHRPMETLFVIGGGLAGCEAALQAAEAGVQV RLIEMKPARMSPAHHDPRLAELVCSNSLRNDQPSSAVGLLKLELEIMGSRLMAAARQS AVPAGKALAVDRGRFAELVDQQVRNHPRIKLIGQEAVAPPEDAPCILASGPLTDGALA QWLAQRAGAAHLHFYDAIAPIVTRESVDMDHAFWGDRWAEPGQGDYLNCPLDRQQWAA FYAALTAAENVALHDFESPRFFEGCLPIEVMAARGEQTLLFGPMKPVGLHRPGQPGRF HAVVQLRKEDAEGRLLNMVGFQTKLTHQSQLRVFRLIPALAHAEFARLGSIHRNSFVD APRVLDAFMRLRTAPNVFVAGQLAGVEGYVESMAAGLLCGLNAARLLKGQQPLRPPAT TALGGLLAHLANDQTKDFQPSNVNFGLLPPLGGKKIPKKDRGALLARRAMQDLLAWLG DQGLTPAKAAPPL" misc_feature complement(300959..302176) /locus_tag="Deba_0268" /note="NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; cl11520" /db_xref="CDD:187089" misc_feature complement(301157..302140) /locus_tag="Deba_0268" /note="Glucose inhibited division protein A; Region: GIDA; pfam01134" /db_xref="CDD:144651" gene 302554..304950 /locus_tag="Deba_0269" /db_xref="GeneID:9492708" CDS 302554..304950 /locus_tag="Deba_0269" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013655:IPR013767:IPR003661:IPR003594:IPR 005467:IPR000014:IPR000700:IPR009082:IPR001610:IPR004358; KEGG: ppd:Ppro_3150 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; SPTR: A1ATS3 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor signal transduction histidine kinase" /protein_id="YP_003806239.1" /db_xref="GI:302341710" /db_xref="GeneID:9492708" /translation="MGEIAKTINRLAEEYRFVLAGANGLPHQVRSLLGITGSYFGADA GALAMWQTGAQLAVCSTWAFTQAQAKRMRRVFGAPPVCPGEPLARIGARLLAPQEPVD SGWLALDQYVSTLNQRNYLGVLPLPWAQGSGACFLVFKQQPQWDEEEARAGANVLILS LSSAFNRSLAVRHSDDYRRIFQYSRDMIYISSRDGRWVDVNEAGVKMLGYDSVEEVLA EPDLGKAAYFKPQDRAAFMEAIERDGYVLDYEVAFKRKDGTPIDVAITSQVREIDGKV VGYEGIIKDITRRKRAEVRAAQQQRMLESILEVMPVAVFVLDRDHTVRYWNRACEELT GWNKSDILETDRVWEVFHRPRGVSLADVILDGDNERLQKFYSKERLRPSPLAEDAWEA EAHFGNLGGKARELFFTAAPLKDSGGQIIGAVEAIVDSSQIKKLERRLAESEALYRTL VESNREGICLQDDQRIIFANSSFMEMFGLSDVGGVRGGILELLDPGCKKEYLQWMRAV WSEDGCDRVFEGQGLRDGLPFDLEITVGATEHGSRPAWLFNVRDVTFRKAIEEQLIRS ERLAATGKLAFDVAHEVNNPLGGILTYAHLMAEDMGEASELYPMVEKIIKLTNRCRII VRGLLDFARRDEPQKEAMDINRVLKETLSLMEGHMILRNVQVVEDFDQGLPYFYGHRS KLEQVFLNMLVNAAEAMEGRGRLDIRTMAHNGGAIEIQFADSGPGMDEEAVGRVFEPF YTTKGRGRGTGLGLSISHGIIKQHGGTIAVESVKGLGTTFRIVLPRQGDEVITERCFT " misc_feature 303103..303411 /locus_tag="Deba_0269" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(303151..303153,303163..303165,303181..303183, 303232..303243,303310..303312,303325..303327) /locus_tag="Deba_0269" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(303214..303216,303235..303237,303259..303261, 303268..303273,303346..303348,303352..303354) /locus_tag="Deba_0269" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 303241..>304251 /locus_tag="Deba_0269" /note="hypothetical protein; Provisional; Region: PRK13560" /db_xref="CDD:106506" misc_feature 303454..>303615 /locus_tag="Deba_0269" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature <303787..304911 /locus_tag="Deba_0269" /note="sensory histidine kinase AtoS; Provisional; Region: PRK11360" /db_xref="CDD:183098" misc_feature 304285..304452 /locus_tag="Deba_0269" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(304288..304290,304300..304302,304309..304311, 304321..304323,304330..304332,304381..304383, 304393..304395,304402..304404,304414..304416, 304423..304425,304435..304437) /locus_tag="Deba_0269" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 304294..304296 /locus_tag="Deba_0269" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 304603..304905 /locus_tag="Deba_0269" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(304621..304623,304633..304635,304642..304644, 304714..304716,304720..304722,304726..304728, 304732..304737,304804..304815,304861..304863, 304867..304869,304882..304887,304891..304893) /locus_tag="Deba_0269" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 304633..304635 /locus_tag="Deba_0269" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(304726..304728,304732..304734,304804..304806, 304810..304812) /locus_tag="Deba_0269" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(305039..305671) /locus_tag="Deba_0270" /db_xref="GeneID:9492709" CDS complement(305039..305671) /locus_tag="Deba_0270" /note="COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: glo:Glov_3639 methyltransferase GidB; PFAM: glucose inhibited division protein; SPTR: B3E3R7 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB" /codon_start=1 /transl_table=11 /product="glucose inhibited division protein" /protein_id="YP_003806240.1" /db_xref="GI:302341711" /db_xref="GeneID:9492709" /translation="MSNFSPLSLDDVRTAGQRLAGGPLPADFWPQCQTLLEELLRWNQ SIRLVGHRAMGEAWLNLALDGLAMVPLLGPGRLLDIGAGAGFPGLVLALALPALTVTM IDGRAKKVSFQKHAARLLGLGSRVAPVVGRAGEGALAGQSFDFVSLRAVTDVAGSLAL ARPFCRPGGLILLPRAQADEAACLANGMAIHPYELPQLGRRLVATLRAPA" misc_feature complement(305063..305584) /locus_tag="Deba_0270" /note="16S rRNA methyltransferase GidB; Reviewed; Region: gidB; PRK00107" /db_xref="CDD:178868" gene complement(305762..307144) /locus_tag="Deba_0271" /db_xref="GeneID:9492710" CDS complement(305762..307144) /locus_tag="Deba_0271" /note="COGs: COG0486 GTPase; InterPro IPR018948:IPR002917:IPR004520:IPR005225; KEGG: hau:Haur_3441 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; SPTR: A9B3U1 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE" /codon_start=1 /transl_table=11 /product="tRNA modification GTPase TrmE" /protein_id="YP_003806241.1" /db_xref="GI:302341712" /db_xref="GeneID:9492710" /translation="MRPSIMAAQDTIVARATAAGAGGVAIVRLSGPRSWAVGRALLPW TARRPIIPRRMELGLVVDPASGEAVDQALAVFFRGPHSYTTEDSVEIHCHGGSACVWR VIGLAQAQGCRLAGPGEFTMRAMLGGRLDLTQAEAVGRLAAAQSDIEARLAMAMLAGG LGRALGPARQAIVAAAASVEAAIDFPDDAPELAGPAQATALEDGAARPLAALLAGTVG RAAYWEGAKVAICGRPNVGKSSLFNALLGRQRAIVSERPGATRDVVDEVLILGGVACR LADTAGLGPAADELDRLGQERATSFLADCDLALVLLDGSRPLTSADHAVLALCQDRPR LLVVNKADLPPAWQPSALGLGPTLAISATSGLGLNELARAVAEALCQGAAEPAPGEVV VNARQRAALGRGLAFVRRAVAELGRPEPRPELISLDLAGALAALGEVDGQGAPDEVIE AVFSTFCVGK" misc_feature complement(305765..307060) /locus_tag="Deba_0271" /note="tRNA modification GTPase TrmE; Reviewed; Region: trmE; PRK05291" /db_xref="CDD:179996" misc_feature complement(306758..307060) /locus_tag="Deba_0271" /note="GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396" /db_xref="CDD:192568" misc_feature complement(306008..306472) /locus_tag="Deba_0271" /note="TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase...; Region: trmE; cd04164" /db_xref="CDD:133364" misc_feature complement(306428..306451) /locus_tag="Deba_0271" /note="G1 box; other site" /db_xref="CDD:133364" misc_feature complement(order(306056..306064,306119..306121, 306125..306130,306425..306436,306440..306442)) /locus_tag="Deba_0271" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133364" misc_feature complement(306356..306406) /locus_tag="Deba_0271" /note="Switch I region; other site" /db_xref="CDD:133364" misc_feature complement(306365..306367) /locus_tag="Deba_0271" /note="G2 box; other site" /db_xref="CDD:133364" misc_feature complement(order(306233..306277,306281..306313)) /locus_tag="Deba_0271" /note="Switch II region; other site" /db_xref="CDD:133364" misc_feature complement(306299..306310) /locus_tag="Deba_0271" /note="G3 box; other site" /db_xref="CDD:133364" misc_feature complement(306119..306130) /locus_tag="Deba_0271" /note="G4 box; other site" /db_xref="CDD:133364" misc_feature complement(306056..306064) /locus_tag="Deba_0271" /note="G5 box; other site" /db_xref="CDD:133364" gene complement(307231..308073) /locus_tag="Deba_0272" /db_xref="GeneID:9492711" CDS complement(307231..308073) /locus_tag="Deba_0272" /note="COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: dsa:Desal_1067 single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; SPTR: C6C0J7 Single-stranded nucleic acid binding R3H domain protein; PFAM: R3H domain" /codon_start=1 /transl_table=11 /product="single-stranded nucleic acid binding R3H domain protein" /protein_id="YP_003806242.1" /db_xref="GI:302341713" /db_xref="GeneID:9492711" /translation="MEFAEFTGKNTEDALLKAQQHFALPLDRLHVEVVHAGSGGLFGL FGAKKAVVRARPLPDSSGDELAEMMADLSGATRPAPASPGQTPAVAGEVVEALVDESE LAVAETDGEGGGFFDDEDEAPAVEGRLEDESVAADARAVLARLIAPLDEKAVVGAQNT DQGIMLDISGDEAGVLIGRRGQTLEALQYLTTRIVSHKHGRPVRVHVDAGGYRRRRRQ SLEELALRLADKARATGRPVSLGPICAPERRIVHMALRAEAGISTISRGRGELKKVVI SPRR" misc_feature complement(307429..307629) /locus_tag="Deba_0272" /note="jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta...; Region: jag_KH; cd02414" /db_xref="CDD:48412" misc_feature complement(307531..307542) /locus_tag="Deba_0272" /note="G-X-X-G motif; other site" /db_xref="CDD:48412" misc_feature complement(307237..307437) /locus_tag="Deba_0272" /note="R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine...; Region: R3H_jag; cd02644" /db_xref="CDD:100073" misc_feature complement(order(307318..307320,307330..307332)) /locus_tag="Deba_0272" /note="RxxxH motif; other site" /db_xref="CDD:100073" gene complement(308078..309718) /locus_tag="Deba_0273" /db_xref="GeneID:9492712" CDS complement(308078..309718) /locus_tag="Deba_0273" /note="COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708:IPR019998:IPR020001:IPR013308; KEGG: dps:DP0855 hypothetical protein; PFAM: 60 kDa inner membrane insertion protein; SPTR: Q6APY9 Conserved hypothetical membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain" /codon_start=1 /transl_table=11 /product="membrane protein insertase, YidC/Oxa1 family" /protein_id="YP_003806243.1" /db_xref="GI:302341714" /db_xref="GeneID:9492712" /translation="MDSDAKRVVLALVISVAVLFAWTTFVMPPEPKQAPAPTATPAQT AQATAAAPAPAAMPAPAPAPQVMPAYQDVVVETPLMRATFSTKGGALRKVVLKDYFAK PGQQGGEMVLLDLADSEPYALGLALVKLDPHLAQRPFQASAQRLEVTAAGQSLSFSAE SAGVRVVKTYTFRPDSHAFQLSVSLQNKNAGRIELTPELILAEYVSKMHANSYAFTGS QVVAGGSLEELDHGDLEDSPVVAGPIDCLTLSIPYFMGAVAPESWPAVAQGKPSARGW ADAKLMTATLVSPLLPMDAGQSLDLKFLVYYGPKELHVLEPLGHSLAMAVDFGWFDVI AKPMLAGLNFFHDYVNNYGVAIIIITVLIKLLFWPLQNKSYESMKKMQKLQPQIAKIR EKYKDDKQEMNQQVMQLYKTYKVNPLGGCLPMLAQVPVFIAFYKVLGSSIELRHAPFW LWINDLSAPDRLPIGFEIPFVGDGIPVLTLLMGASMFITQKMSPATGDPTQQKMMMLM PVIFTVMFINFPSGLVLYWFVQNLLGIGQQWLVNRRKD" misc_feature complement(308087..309508) /locus_tag="Deba_0273" /note="membrane protein insertase; Provisional; Region: PRK01318" /db_xref="CDD:179279" misc_feature complement(308090..308668) /locus_tag="Deba_0273" /note="60Kd inner membrane protein; Region: 60KD_IMP; cl00489" /db_xref="CDD:193840" gene complement(309758..309973) /locus_tag="Deba_0274" /db_xref="GeneID:9492713" CDS complement(309758..309973) /locus_tag="Deba_0274" /note="COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: sfu:Sfum_2596 hypothetical protein; PFAM: protein of unknown function DUF37; SPTR: A6C6L1 Putative uncharacterized protein; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein TIGR00278" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806244.1" /db_xref="GI:302341715" /db_xref="GeneID:9492713" /translation="MGWAAGLAWLLVRAYQLTLSPLLGRQCRFLPTCSDYALDALRKY GFWRGCAKAAIRLAKCHPFHPGGYDPA" misc_feature complement(309764..309946) /locus_tag="Deba_0274" /note="Domain of unknown function DUF37; Region: DUF37; cl00506" /db_xref="CDD:186043" gene complement(309976..310350) /locus_tag="Deba_0275" /db_xref="GeneID:9492714" CDS complement(309976..310350) /locus_tag="Deba_0275" /note="COGs: COG0594 RNase P protein component; InterPro IPR000100:IPR020568:IPR020539:IPR014721; KEGG: ppd:Ppro_3625 ribonuclease P protein component; PFAM: ribonuclease P protein; SPTR: A1AV46 ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; manually curated; PFAM: ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial" /codon_start=1 /transl_table=11 /product="ribonuclease P protein component" /protein_id="YP_003806245.1" /db_xref="GI:302341716" /db_xref="GeneID:9492714" /translation="MISQGQSFPKRARLRSRGQFLQMRNGARRHRCDHFLVVWKAGPP GPARLGLTVSRKVAGAVGRNRVKRLAREVFRRSGELLPPAVDVLVIVQRGADRQDFSS VWRQLREAFGKISAGSAAGCRP" misc_feature complement(310009..310323) /locus_tag="Deba_0275" /note="Ribonuclease P; Region: Ribonuclease_P; cl00457" /db_xref="CDD:193826" gene complement(310366..310500) /locus_tag="Deba_0276" /db_xref="GeneID:9492715" CDS complement(310366..310500) /locus_tag="Deba_0276" /note="InterPro IPR000271; KEGG: drt:Dret_2142 ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: C8X4F2 ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type" /codon_start=1 /transl_table=11 /product="ribosomal protein L34" /protein_id="YP_003806246.1" /db_xref="GI:302341717" /db_xref="GeneID:9492715" /translation="MKRTFQPSNLKRKRTHGFLVRSRSKAGRAVLARRRAKGRARLSV " misc_feature complement(<310429..310500) /locus_tag="Deba_0276" /note="Ribosomal protein L34; Region: Ribosomal_L34; cl00370" /db_xref="CDD:185948" gene 310860..311918 /locus_tag="Deba_0277" /db_xref="GeneID:9492716" CDS 310860..311918 /locus_tag="Deba_0277" /note="COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753:IPR004000; KEGG: sfu:Sfum_2592 rod shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SMART: actin/actin family protein; SPTR: A0LLG8 Rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family" /codon_start=1 /transl_table=11 /product="cell shape determining protein, MreB/Mrl family" /protein_id="YP_003806247.1" /db_xref="GI:302341718" /db_xref="GeneID:9492716" /translation="MLLDPILGIFSNDMAIDLGTANTLVYVRGKGIVLSEPSVVAVRQ ETRGGNRVLAVGKEAKMMLGRTPGNIVAIRPMKDGVIADFEVTEAMLRHFIRKVHNRR NLVRPRIIISVPSGITQVEKRAVRESAESAGAREVYLIEEPMAAAIGAGLPIQDPTSN MVVDIGGGTTEVAVISLTGVVYSKSVRVGGDKMDEAILQHIKRKHNLLIGERTAEMIK TTIGHAYPLEMAEQDKNLVQASIEVKGRDLITGIPKTLGIDSAEIRMSINEQIEAIVE TVKIALEQTPPELAADIVDNGIVLTGGGALIKGLNVLLSQETGLPIQTTEDPLSTVVL GSGMCLDNLDLLREVMIR" misc_feature 310878..311915 /locus_tag="Deba_0277" /note="rod shape-determining protein MreB; Provisional; Region: PRK13927" /db_xref="CDD:184401" misc_feature 310905..311810 /locus_tag="Deba_0277" /note="Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one...; Region: ACTIN; cl11528" /db_xref="CDD:187091" misc_feature order(310917..310919,311349..311351,311370..311372, 311514..311516,311766..311768) /locus_tag="Deba_0277" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28896" misc_feature order(311388..311393,311397..311399,311403..311405, 311409..311411,311715..311717,311721..311723) /locus_tag="Deba_0277" /note="profilin binding site; other site" /db_xref="CDD:28896" gene 311988..312815 /locus_tag="Deba_0278" /db_xref="GeneID:9492717" CDS 311988..312815 /locus_tag="Deba_0278" /note="COGs: COG1792 Cell shape-determining protein; InterPro IPR007221:IPR005223; KEGG: dol:Dole_0593 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: A8ZU91 Rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreC" /protein_id="YP_003806248.1" /db_xref="GI:302341719" /db_xref="GeneID:9492717" /translation="MSFFRRNRFSLTIIVLVLSALAFFSYNAGRPGASPGVGRYLVEI IAPAQKVVTAVGDFIENVWRRYFALVQAAKENEKLSSLVDQMRQEVATMEEMRLENER LRGLLGLEERTPEPMVAAQVVGGDPSGYFRTVLIDRGDVGGVAATMPVVNAAGVVGRV VWTGPNYAKVLLLTDHNSGVDVLVQRTRARGVVQGAGRDLLKLKYLLHSEEVRPGDKL ITSGVEGVFPKGLLVGYVLSAKATDKGVFLDVEARPAVDFNRLEDVVVILAGRKLPE" misc_feature 311988..312788 /locus_tag="Deba_0278" /note="rod shape-determining protein MreC; Provisional; Region: PRK13922" /db_xref="CDD:184397" misc_feature 312345..312788 /locus_tag="Deba_0278" /note="rod shape-determining protein MreC; Region: MreC; pfam04085" /db_xref="CDD:146620" gene 312818..313450 /locus_tag="Deba_0279" /db_xref="GeneID:9492718" CDS 312818..313450 /locus_tag="Deba_0279" /note="InterPro IPR007227; KEGG: gem:GM21_1756 rod shape-determining protein MreD; SPTR: C6E6G9 Rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreD" /protein_id="YP_003806249.1" /db_xref="GI:302341720" /db_xref="GeneID:9492718" /translation="MSRWNEGPGEGHQGEGRDWTAAAGLAVESGGGRGVVLRWPRALA TLIMGYVIVALSPTLFDWWSVGPLQLQPLVVVVVSAGFRLPLWPAAALTLFLGYLTDL CSGPPLGMQMTSYVVVLCACAVAERKLDISSWALQMLAVGLMSLLQQALVLTGMALMH EVGDPLVELAAMTVGHALLCALTAPLFFAALEGLVRLISRVSPSSGKGGQ" misc_feature <313064..313390 /locus_tag="Deba_0279" /note="rod shape-determining protein MreD; Region: MreD; cl01087" /db_xref="CDD:189144" gene 313450..315429 /locus_tag="Deba_0280" /db_xref="GeneID:9492719" CDS 313450..315429 /locus_tag="Deba_0280" /EC_number="2.4.1.129" /note="COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR012338:IPR017790; KEGG: geo:Geob_3477 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: peptidoglycan glycosyltransferase; SPTR: B9M5R1 Penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2" /protein_id="YP_003806250.1" /db_xref="GI:302341721" /db_xref="GeneID:9492719" /translation="MGAWGEKRARRGLSRNKAIDPGEIPQVRRALFAAAALVGLAMAV LVGRLWYLQVLHGEEFRLLSENNRVRLVDVPPSRGLIFDCKRRLLADNRPTFTLVAVP EDVPDWDLLTRRLHALIGITPQEVADARKAARGAPPFKAMRLRSNLDRDQLANLETFQ YELPGVKVMVEYRRAYLAAKETAHVIGYLGEINAEELKKAPRELYRMGDYVGRDGLER SRDRVLHGARGVRQVEVDAVGRELKVLSDKPERPGHDLILTLDLDLQKAAAVGMGQQV GAVVALNPKNGQVLCMYSAPSFDQNSFVLGMSGAQWQALSKDPMHPLKHRAISGVYPP GSTYKIITSAAGLSEGVINKDTLYFCSGQMSLGRRTYKCWAHKRGGHGSVNLHKALRE SCDVYYYRVGKSLGVDRLAKYARAFGLGRASGVPLPHESSGLIPDSAWKRKRFGEPWQ EGETLSVAIGQGFNLTTPLQLARMVAVVANGGRLVTPTLVAAVVRPDGGEPVPEPPGM ISRTPVSDEHLKLIHEGLVAVVNEPHGTASRARVKGVTVAGKTGTAQVVALKFERKKG EETPWRFRDHALFVAYAPAEDPEIAVSVVIEHGGHGGSDAAPVAQRVLATYFHGPQPL PEDEAAKAAEAAGRPAGQGTTGQPAAPEAEGVDGD" misc_feature 313597..315303 /locus_tag="Deba_0280" /note="penicillin-binding protein 2; Region: pbp2_mrdA; TIGR03423" /db_xref="CDD:188321" misc_feature 313669..314187 /locus_tag="Deba_0280" /note="Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717" /db_xref="CDD:190723" misc_feature 314293..315294 /locus_tag="Deba_0280" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene 315422..316525 /locus_tag="Deba_0281" /db_xref="GeneID:9492720" CDS 315422..316525 /locus_tag="Deba_0281" /note="COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182:IPR006162:IPR018365:IPR011923; KEGG: gbm:Gbem_2459 rod shape-determining protein RodA; PFAM: cell cycle protein; SPTR: C6MMI9 Rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA" /codon_start=1 /transl_table=11 /product="rod shape-determining protein RodA" /protein_id="YP_003806251.1" /db_xref="GI:302341722" /db_xref="GeneID:9492720" /translation="MIDRRMIYNFDWLTLALVVTLAGLGVLNLYSAASSFEQAGTPVY VKQIYWFGLGLVAMLAVAAVGYQRLASLSYVLYAVVVAFLVAVLLWGKVVGGAQRWLV MGPLGLFQPSELARLAMVLVLAQYFQRHDNGRPYTLRRLIIPLALAAAPAALILKQPD LGTAIMVLAVSGSVILINGVKTSTLLISSGAVLAVLPVAWNFLKDYQKRRIFSFLDPE ADPLGAAYHLIQSKIAVGSGQFWGKGFMAGTQTQLHFLPEQHTDFAFSVLNEEWGFVG GVLVLCLLTALILRGVLQASRAKDRLGLLCVIGGTALIFWPTVINVAMILGLAPVVGI PLPFVSYGGSSMLTIMAAVGLIQSVTMRRYVFH" misc_feature 315452..316513 /locus_tag="Deba_0281" /note="Cell cycle protein; Region: FTSW_RODA_SPOVE; cl00511" /db_xref="CDD:189110" gene 316695..317090 /locus_tag="Deba_0282" /db_xref="GeneID:9492721" CDS 316695..317090 /locus_tag="Deba_0282" /note="COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: mxa:MXAN_7475 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: Q1CVJ5 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF583" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806252.1" /db_xref="GI:302341723" /db_xref="GeneID:9492721" /translation="MRRRRGSSSGEVSVLLGGASNIEGKLNFKGQARLDGVFKGEIVG EGTLIVGPGANVEARILATAVEISGVVVGDIEATERIELRAPGKLVGNIVAPLVVMDE GVVFEGNCRMAGDGGDSSPKVRLIAGDNK" misc_feature 316758..317030 /locus_tag="Deba_0282" /note="Polymer-forming cytoskeletal; Region: Bactofilin; cl09137" /db_xref="CDD:195802" gene 317341..317775 /locus_tag="Deba_0283" /db_xref="GeneID:9492722" CDS 317341..317775 /locus_tag="Deba_0283" /note="InterPro IPR002146; KEGG: sfu:Sfum_2587 fis family transcriptional regulator; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: A8ZU96 H+transporting two-sector ATPase B/B' subunit; PFAM: ATP synthase B/B' CF(0)" /codon_start=1 /transl_table=11 /product="H+transporting two-sector ATPase B/B' subunit" /protein_id="YP_003806253.1" /db_xref="GI:302341724" /db_xref="GeneID:9492722" /translation="MISIIPDASVFIQIANFVVLVVALNYLLFKPIRGVIAQRAEKMA MLGSDIAAATDGAQAKGEAMNAELAEARRQGQALKEQQKAEAHSQERSVVEAATKEME QAVAKVRAQIAEEIGQAREELKAQVRGFGQDLAQKILGRSIQ" misc_feature 317362..317769 /locus_tag="Deba_0283" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" gene 317772..318437 /locus_tag="Deba_0284" /db_xref="GeneID:9492723" CDS 317772..318437 /locus_tag="Deba_0284" /note="COGs: COG0711 F0F1-type ATP synthase subunit b; InterPro IPR002146:IPR005864; KEGG: dal:Dalk_3630 ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: B8FGT8 ATP synthase subunit b; TIGRFAM: ATP synthase F0, B subunit; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b" /codon_start=1 /transl_table=11 /product="ATP synthase F0, B subunit" /protein_id="YP_003806254.1" /db_xref="GI:302341725" /db_xref="GeneID:9492723" /translation="MKSGVKIRVLALLGALMLVLSLASWSMASDGAAGAETVEQVEAH VGDENMEAQGHGHGVTEGQLHDFILRCVNFGLLVIILLVLVRKPVKNALAARSEGIAT ELDELARRKEEAARELAEMERRLRDAQGEREAIVAEFRAQGEREAQRIVEGAKAMAQR IKDQAQFTIEQETNQAKLELRREIADLSATVAGDILREQITADDRARLVSEYLTKVEQ EVQ" misc_feature <318180..318419 /locus_tag="Deba_0284" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" gene 318434..318985 /locus_tag="Deba_0285" /db_xref="GeneID:9492724" CDS 318434..318985 /locus_tag="Deba_0285" /note="COGs: COG0712 F0F1-type ATP synthase subunit delta (mitochondrial oligomycin sensitivity protein); InterPro IPR000711; KEGG: dol:Dole_0600 F0F1 ATP synthase subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; SPTR: A8ZU98 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, subunit delta; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 subunit delta" /codon_start=1 /transl_table=11 /product="ATP synthase F1, subunit delta" /protein_id="YP_003806255.1" /db_xref="GI:302341726" /db_xref="GeneID:9492724" /translation="MTSFIVAKRYAKALLELGREDGNTELYGKELGAVAQMLADSAEL ESTLVNPGFDFDSRKKLLAAILQKLGVSPMVANFFRLLMDRGRIAAARDIALTYGLLL DEVNGVTRAEVRTAAALNEEEVKRLTQSLKSVARREVALEVIEDPSLIGGVVAKIGDL VLDGSVKTQLANLKESLRRGDYA" misc_feature 318434..318973 /locus_tag="Deba_0285" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" misc_feature 318449..318964 /locus_tag="Deba_0285" /note="ATP synthase delta (OSCP) subunit; Region: OSCP; pfam00213" /db_xref="CDD:189453" gene 318985..320499 /locus_tag="Deba_0286" /db_xref="GeneID:9492725" CDS 318985..320499 /locus_tag="Deba_0286" /note="COGs: COG0056 F0F1-type ATP synthase subunit alpha; InterProIPR004100:IPR000194:IPR000793:IPR018118:IPR 020003:IPR005294; KEGG: dal:Dalk_3628 F0F1 ATP synthase subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SPTR: B8FGT6 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, subunit alpha; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 subunit alpha" /codon_start=1 /transl_table=11 /product="ATP synthase F1, subunit alpha" /protein_id="YP_003806256.1" /db_xref="GI:302341727" /db_xref="GeneID:9492725" /translation="MQIKAEEISQVIREQIKDYDKKVEVAETGTVLSVGDGIARIHGV EKAMAGELLEFPGGILGMVLNLEEDNVGVTIMGDCEHIKEGDTVKRTGRIAEVPVGEA VIGRVIDPVGNPLDGKGPINAKEARRIEMIAPGVVQRKSVHEPMYTGLKAIDAMTPVG RGQRELVIGDRQIGKTAVLVDAIINQKGQDVYCIYVAVGQKKSTVAQVVDTLTRHGAM EYTCVVSACASDPATLQYIAPYSGCAIGEYFRDSARHALICYDDLSKQAVAYRQISLL LRRPPGREAFPGDIFYNHSRLLERAAKLNDELGAGSLTALPVIETQAGDVSAYIPTNV ISITDGQIYLEPRLFFSGVRPAINVGLSVSRVGGAAQCKAMKQVAGTLRLDLAQYREL EAFAQFGSDLDKATQAQLNRGMRLVEILKQPQYQPLPMVKQVTILFAGTRGFLDKLPV AKLGEYEKQLYEFIESKHAGVFAELQAKQAIDAELEGKMKAVLEEFDRIFSAQL" misc_feature 318985..320490 /locus_tag="Deba_0286" /note="F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281" /db_xref="CDD:181753" misc_feature 319057..319260 /locus_tag="Deba_0286" /note="ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874" /db_xref="CDD:145823" misc_feature 319264..320085 /locus_tag="Deba_0286" /note="F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132" /db_xref="CDD:29998" misc_feature order(319327..319332,319378..319383,319387..319392, 319399..319401,319405..319407,319495..319500, 319585..319596,319600..319605,319612..319614, 319795..319800,319816..319824,319828..319833, 319846..319848,319858..319860,319867..319869, 319879..319881,319990..319992,319999..320001, 320032..320037,320044..320046,320077..320079) /locus_tag="Deba_0286" /note="beta subunit interaction interface [polypeptide binding]; other site" /db_xref="CDD:29998" misc_feature 319489..319512 /locus_tag="Deba_0286" /note="Walker A motif; other site" /db_xref="CDD:29998" misc_feature order(319495..319497,319507..319515,319567..319569, 319582..319584,319765..319770,319777..319779, 319942..319944,319990..319992,320029..320031, 320044..320049,320077..320079) /locus_tag="Deba_0286" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29998" misc_feature 319753..319767 /locus_tag="Deba_0286" /note="Walker B motif; other site" /db_xref="CDD:29998" misc_feature 320110..320385 /locus_tag="Deba_0286" /note="ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306" /db_xref="CDD:144044" gene 320505..321383 /locus_tag="Deba_0287" /db_xref="GeneID:9492726" CDS 320505..321383 /locus_tag="Deba_0287" /note="COGs: COG0224 F0F1-type ATP synthase subunit gamma; InterPro IPR000131:IPR018039; KEGG: dsa:Desal_3455 ATP synthase F1, subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; SPTR: C0GL89 ATP synthase gamma chain; TIGRFAM: ATP synthase F1, subunit gamma; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 subunit gamma" /codon_start=1 /transl_table=11 /product="ATP synthase F1, subunit gamma" /protein_id="YP_003806257.1" /db_xref="GI:302341728" /db_xref="GeneID:9492726" /translation="MASLRDIQTKISAVKKTRQITKAMNMVATAKLRQVQGKTEAFRP YATKFREVLGSLSQGVDPEIHPLLAQPEVVENVGLIALSADRGLCGSFNAGLIDKTQK FINETKANGRGLKIYAVGRQVGDYLRKRNIETAQRLSGAMNVVDFDLATQVGGFALDP FLAGEVQEVYIIFSQFMGMGRQAPTALKLLPIEPEAASEASAAGAAEYLTEPSAEEIL VELLPRYLNVTIYRALLETATSEHAARMTAMDNATRNCKDMIERLTLAYNKARQAAIT TELMDIIGGAEALKQG" misc_feature 320505..321374 /locus_tag="Deba_0287" /note="ATP synthase; Region: ATP-synt; cl00365" /db_xref="CDD:193790" gene 321424..322833 /locus_tag="Deba_0288" /db_xref="GeneID:9492727" CDS 321424..322833 /locus_tag="Deba_0288" /note="COGs: COG0055 F0F1-type ATP synthase subunit beta; InterProIPR004100:IPR000194:IPR000793:IPR018118:IPR 020003:IPR003593:IPR005722; KEGG: sfu:Sfum_2582 F0F1 ATP synthase subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; SPTR: A0LLF8 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, subunit beta; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 subunit beta" /codon_start=1 /transl_table=11 /product="ATP synthase F1, subunit beta" /protein_id="YP_003806258.1" /db_xref="GI:302341729" /db_xref="GeneID:9492727" /translation="MSVGKITQVIGPVIDVEFPEGELPEILTALLVTNKGINDQEDNL VVEVAQHLGDNVVRCIAMDVTEGLQRGLPVKNTGKPIQMPVGDAILGRVLNVVGRPVD GLGPVNAKEYFPIHRPAPSLVDQDTSVNVLETGVKVIDLLVPFPRGGKMGMFGGAGVG KTVIMMEMIHNIAMQHGGISVFAGVGERTREGNDLYHEMKDSGVISKAALVYGQMTEP PGARARVAISALTTAEYYRDVQGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQP TLGTDLGELQERITSTTKGSITSVQCVYVPADDLTDPAPATTFAHLDGTVVLSRQISE LGIYPAVDPLDSTSRILDPNYLGEEHYGVARKVQMILQKYKDLQDIIAILGMDELSDE DKITVHRARRIQRFLSQPFHVAEVFTGMAGAYVKLEDNIRSFKEILEGKADDLPEQAF HMVGNIDDARAKAERLAQM" misc_feature 321424..322824 /locus_tag="Deba_0288" /note="F0F1 ATP synthase subunit beta; Validated; Region: PRK09280" /db_xref="CDD:181752" misc_feature 321439..321657 /locus_tag="Deba_0288" /note="ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874" /db_xref="CDD:145823" misc_feature 321661..322482 /locus_tag="Deba_0288" /note="F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133" /db_xref="CDD:29999" misc_feature order(321730..321732,321781..321783,321787..321792, 321796..321798,321802..321804,321985..321993, 322000..322002,322066..322074,322087..322089, 322180..322182,322189..322191,322201..322203, 322219..322227,322231..322236,322249..322251, 322261..322263,322282..322284,322333..322335, 322342..322347,322357..322359,322378..322380, 322384..322392,322423..322428,322453..322458, 322462..322464,322468..322470) /locus_tag="Deba_0288" /note="alpha subunit interaction interface [polypeptide binding]; other site" /db_xref="CDD:29999" misc_feature 321889..321909 /locus_tag="Deba_0288" /note="Walker A motif; other site" /db_xref="CDD:29999" misc_feature order(321895..321897,321904..321912,321982..321987, 321994..321996,322168..322170,322180..322182, 322432..322437) /locus_tag="Deba_0288" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29999" misc_feature 322156..322170 /locus_tag="Deba_0288" /note="Walker B motif; other site" /db_xref="CDD:29999" misc_feature order(322426..322428,322432..322434,322450..322455) /locus_tag="Deba_0288" /note="inhibitor binding site; inhibition site" /db_xref="CDD:29999" misc_feature 322504..322815 /locus_tag="Deba_0288" /note="ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306" /db_xref="CDD:144044" gene 322852..323265 /locus_tag="Deba_0289" /db_xref="GeneID:9492728" CDS 322852..323265 /locus_tag="Deba_0289" /note="COGs: COG0355 F0F1-type ATP synthase subunit epsilon (mitochondrial subunit delta); InterPro IPR020546:IPR020547:IPR001469; KEGG: dma:DMR_04830 ATP synthase epsilon chain; PFAM: ATPase, F1 complex, delta/subunit epsilon-like; SPTR: C4XI12 ATP synthase epsilon chain; TIGRFAM: ATP synthase F1, subunit epsilon; PFAM: ATP synthase, delta/Epsilon chain, beta-sandwich domain; ATP synthase, delta/Epsilon chain, long alpha-helix domain; TIGRFAM: ATP synthase, F1 subunit epsilon (delta in mitochondria)" /codon_start=1 /transl_table=11 /product="ATP synthase F1, subunit epsilon" /protein_id="YP_003806259.1" /db_xref="GI:302341730" /db_xref="GeneID:9492728" /translation="MANKILLEVVTPDKLLLSKEVEAVVATGVDGEFGVLYGHVPFLA TLDIGELRFRDGAHTDYAAIAGGFAEVTGSKVTVLAEAAELAREIDVDRAQRAREKAE QRLAKVKGEDMEYIRVEAALKRAMLRMRIVQRGQA" misc_feature 322852..323262 /locus_tag="Deba_0289" /note="F0F1 ATP synthase subunit epsilon; Provisional; Region: atpC; PRK13446" /db_xref="CDD:184056" misc_feature 322870..323100 /locus_tag="Deba_0289" /note="ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Region: ATP-synt_DE_N; cl10033" /db_xref="CDD:195951" gene 323373..324584 /locus_tag="Deba_0290" /db_xref="GeneID:9492729" CDS 323373..324584 /locus_tag="Deba_0290" /note="InterPro IPR001087:IPR013830; KEGG: dal:Dalk_4253 hypothetical protein; PFAM: lipolytic protein G-D-S-L family; SPTR: B8FM96 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="lipolytic protein G-D-S-L family" /protein_id="YP_003806260.1" /db_xref="GI:302341731" /db_xref="GeneID:9492729" /translation="MSKQRKIISALLGLTVLGLLANVLYAIFSKDLPLAAVTYNIGYA EDIGLALFYFILGLLIFLATLFAHVLFTRRGLLRLALVLASLVVSLVLFELALIPFNL VFNSGRALEFNFEHTRREAEKNPHLKGTWTAKVNWLQKDDEIGYQPLLGPGFPYSEHG ALHNGYDPVKRPGLTRVLFLGDSICALGFLTEYCKEIAGLANYDYWTMGVYGYSTRQE LIYFQRNGLKLRPDVVILEFCLNDWDGTPVVLKDEGGYTVIANTYVGAQHINYWLYKH STLYRVYVSLKASFTNRASLQDDVRENIALLQRLSRQHGFALRVVVYPELEKLTLWPE NFRRQRADILKILDELGIEHYDVAPMMDRQLQRHSRDWARLEPTDHFHPSRALSRLIA EEVVERGYLRP" gene 324677..325453 /locus_tag="Deba_0291" /db_xref="GeneID:9492730" CDS 324677..325453 /locus_tag="Deba_0291" /note="COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR001228; KEGG: ppd:Ppro_0501 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: A1ALB2 Bifunctional protein glmU; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2C-methyl-D-erythritolsynthas e" /protein_id="YP_003806261.1" /db_xref="GI:302341732" /db_xref="GeneID:9492730" /translation="MNAPGTNPSELAVVILAAGKGTRMKSDLPKVLHPLAGRPLLGHV LALADALGASRKVAVIGYQAQLVRQAFAARGDLLYAVQEPQLGTGHAMMAAAPALAGF AGRVLVLYGDVPCLRAETCRRLLAEHDRQGNAMTVLAMELERPGAYGRLIAGADGRLR AIVEARDASPAQLAVRLVNSGIYVFEAAALLGNLAAIRPDNDQQEYYLTDMAGILGGL GLAVGYVICPDPDEVAGVNSKDELAQLEARLAAGRGAVGA" misc_feature 324713..325393 /locus_tag="Deba_0291" /note="N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540" /db_xref="CDD:133020" misc_feature order(324722..324730,324851..324853,324938..324940, 324947..324949,325004..325006,325010..325012) /locus_tag="Deba_0291" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133020" misc_feature order(325010..325012,325385..325387) /locus_tag="Deba_0291" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133020" gene 325458..327296 /locus_tag="Deba_0292" /db_xref="GeneID:9492731" CDS 325458..327296 /locus_tag="Deba_0292" /EC_number="2.6.1.16" /note="COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR000583:IPR001347:IPR017932:IPR005855; KEGG: pca:Pcar_2933 glucosamine--fructose-6-phosphate aminotransferase; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; SPTR: Q3A0D9 Glutamine--fructose-6-phosphate transaminase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)" /codon_start=1 /transl_table=11 /product="glucosamine/fructose-6-phosphate aminotransferase, isomerizing" /protein_id="YP_003806262.1" /db_xref="GI:302341733" /db_xref="GeneID:9492731" /translation="MCGIIGYIGPKDPVEVIMEGLSRLEYRGYDSAGLAVIDQGGFVV RRATGKLEGLRQRLALEPVHGTIGMGHTRWATHGRPCEANAHPHLAGDVAVVHNGIIE NYLELKRELQAEGRQFSSDTDTEIVAHLVQRELDHGAVDLPQAVSRALGQIRGSYALV ILDRRRPDLMIGARKDSPLILGLGQQPGEFFLASDVPAFLSHSNQVVFLDDGDLVTIS HGGYQIESLLGPAKEHAVTTISWSPAMAEKAGFKHFMQKEIFEQPRALTDTLTGRVKA GSEEIFLPDLGLSEGDLRQAKRMVLLACGTSYHAALVAKFAIEGLARMPAEVDLGSEF RYRDPLVGPGDIVVAISQSGETADTLAAVREARAKGARAVGVCNVLGSTLTRETDGVV YTHAGPEIGVASTKAFTTQLMALYILAIHLGRTRGVLDAGATRRLVDQLVLLPGLVQQ TLEREEEVRKVAEAYCQASDFLYLGRGNCFPIALEGALKLKEISYIHAEGYPAGEMKH GPIALIDEKMPVVVLANQTDVLEKVLSNMEEVRARGGKLIAVTEEDNRSAQALADAII TVPNTPPLLAPVTMVTPLQLLAYHVAVLRGTDVDQPRNLAKSVTVE" misc_feature 325458..327293 /locus_tag="Deba_0292" /note="glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331" /db_xref="CDD:178980" misc_feature 325461..326108 /locus_tag="Deba_0292" /note="Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate...; Region: GFAT; cd00714" /db_xref="CDD:48478" misc_feature order(325461..325463,325536..325538,325674..325679, 325683..325688,325713..325715,325749..325754, 325824..325829) /locus_tag="Deba_0292" /note="glutaminase active site [active]" /db_xref="CDD:48478" misc_feature 326349..326726 /locus_tag="Deba_0292" /note="SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008" /db_xref="CDD:88405" misc_feature order(326367..326372,326400..326405,326412..326417, 326436..326438,326442..326444,326454..326456, 326463..326465,326529..326531) /locus_tag="Deba_0292" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88405" misc_feature order(326373..326378,326508..326516) /locus_tag="Deba_0292" /note="active site" /db_xref="CDD:88405" misc_feature 326850..327287 /locus_tag="Deba_0292" /note="SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009" /db_xref="CDD:88406" misc_feature order(326886..326888,326928..326930,326940..326942, 326946..326948,326952..326954,326958..326960, 326970..326972,326976..326984,326988..326999, 327048..327053,327063..327065,327069..327074, 327264..327269,327282..327284) /locus_tag="Deba_0292" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88406" misc_feature order(326922..326924,326931..326933) /locus_tag="Deba_0292" /note="active site" /db_xref="CDD:88406" gene 327389..327607 /locus_tag="Deba_0293" /db_xref="GeneID:9492732" CDS 327389..327607 /locus_tag="Deba_0293" /note="KEGG: sat:SYN_03133 cytoplasmic protein; SPTR: Q2LRA2 Hypothetical cytosolic protein; PFAM: Protein of unknown function (DUF904)" /codon_start=1 /transl_table=11 /product="cytoplasmic protein" /protein_id="YP_003806263.1" /db_xref="GI:302341734" /db_xref="GeneID:9492732" /translation="MEIAVFARLEQKVEALLERLAALKEENSELMKLYNEKDSEATEL KRQLAAQEAEREQVRQRIENLVAKLEQI" gene 327620..327904 /locus_tag="Deba_0294" /db_xref="GeneID:9492733" CDS 327620..327904 /locus_tag="Deba_0294" /note="InterPro IPR007838; KEGG: hoh:Hoch_0116 protein of unknown function DUF710; PFAM: protein of unknown function DUF710; SPTR: D0LGL1 Putative uncharacterized protein; PFAM: Cell division protein ZapA" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806264.1" /db_xref="GI:302341735" /db_xref="GeneID:9492733" /translation="MAGVKVEILGSEYVLRSDRGEAQVRRVAGYLDDRLSEVLSSTTT SSTLAATVLAALNITSELLSLKDERESLLREIEVRAERLAQRIDQAVKAS" misc_feature 327629..327883 /locus_tag="Deba_0294" /note="Cell division protein ZapA; Region: ZapA; cl01146" /db_xref="CDD:194051" gene 327902..328084 /locus_tag="Deba_R0005" /db_xref="GeneID:9492734" ncRNA 327902..328084 /locus_tag="Deba_R0005" /ncRNA_class="other" /product="6S RNA" /note="6S / SsrS RNA as predicted by Rfam (RF00013), score 68.09" /db_xref="GeneID:9492734" gene 328396..329958 /locus_tag="Deba_0295" /db_xref="GeneID:9492735" CDS 328396..329958 /locus_tag="Deba_0295" /note="COGs: COG1418 HD superfamily hydrolase; InterProIPR018111:IPR006674:IPR004088:IPR004087:IPR 003607:IPR017705:IPR006675; KEGG: sfu:Sfum_2578 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; SPTR: A0LLF4 2',3'-cyclic-nucleotide 2'-phosphodiesterase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_003806265.1" /db_xref="GI:302341736" /db_xref="GeneID:9492735" /translation="MNEALWLLVALLAAGGGVAAGYVFRKKQAAARLQSVEILSQKIV DDARREAETLKKEALIQAKDQLYQLKLEFEHEGKERRAELAQVEKRLSQKEELLDKRA EALETRENELSRRETSVGDKEKHLEKKRAEIDQMASQQKEMLERIAGLTQDEAKAQLE ESVVSEARHEAAKTIRRIESETRESAAKKSQEILALACKRYAGDYAVEKTVSVVNLPS EEMKGRIIGREGRNIRAIEAACGIDLIIDDTPEAVIISGFNPMRREIARLSLERLISD GRIHPARIEEIVKKVSTEVEASIKEAGEQATFDVGVHGIHPELVKLLGRLRYRSSYSQ NVLQHSIEVAFLSGIMAAELGINPKQARRAGLLHDIGKAVDHEIEGPHALIGQDLAKR FNEKPHIVHAIAAHHEDLPPETVLDVIVQAADALSGARPGARREMLESYVKRLEELEA IANAHHGVANSYAIQAGREVRIVLEPEKTSDEDAVMISRDVARKIEEELMYPGQIKVT VIRETRAVDFAK" misc_feature 328459..329955 /locus_tag="Deba_0295" /note="phosphodiesterase; Provisional; Region: PRK12704" /db_xref="CDD:183692" misc_feature 329389..329622 /locus_tag="Deba_0295" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene 330040..330846 /locus_tag="Deba_0296" /db_xref="GeneID:9492736" CDS 330040..330846 /locus_tag="Deba_0296" /note="COGs: COG1692 conserved hypothetical protein; InterPro IPR004843:IPR005235; KEGG: mta:Moth_1083 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Q74E26 Ser/Thr protein phosphatase family protein; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: conserved hypothetical protein TIGR00282" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_003806266.1" /db_xref="GI:302341737" /db_xref="GeneID:9492736" /translation="MKLTILHIGDIFGAAGRQALAALLPGLKASLRPDLVIANGENSA GGIGITPETAGEIFLAGVDVITTGNHVWRHREIEALLDDEPHLLRPHNYPGDAPGRGW VIARTQAGPPVGVLNLEGRVFMSQLDCPFACAEEILAGPLAQTPVIIVDFHAEATSEK AALAWRLDGRVSAVLGTHTHVPTADERILPGGTAFQSDVGMTGPHDSIIGVETEVAIQ RFLTARPARFRAAEENPRLQATVVEVDAATGAALHIQRIDAPLSERPGQP" misc_feature 330046..330585 /locus_tag="Deba_0296" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature 330052..330810 /locus_tag="Deba_0296" /note="Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain; Region: MPP_DR1281; cd07382" /db_xref="CDD:163625" misc_feature order(330067..330069,330073..330075,330160..330165, 330244..330249,330496..330498,330571..330573, 330577..330579) /locus_tag="Deba_0296" /note="putative active site [active]" /db_xref="CDD:163625" misc_feature order(330067..330069,330160..330165,330244..330246, 330496..330498,330571..330573,330577..330579) /locus_tag="Deba_0296" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163625" misc_feature order(330400..330402,330406..330408,330424..330426, 330430..330435,330442..330444,330502..330504, 330508..330516,330520..330525,330532..330537, 330574..330576,330580..330594,330598..330600, 330628..330630,330658..330666,330676..330678, 330688..330690,330697..330702,330805..330807) /locus_tag="Deba_0296" /note="homodimer binding site [polypeptide binding]; other site" /db_xref="CDD:163625" gene 330961..332193 /locus_tag="Deba_0297" /db_xref="GeneID:9492737" CDS 330961..332193 /locus_tag="Deba_0297" /EC_number="6.1.1.1" /note="COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002305:IPR002942:IPR002307:IPR014729; KEGG: sfu:Sfum_2577 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: A0LLF3 Tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="tyrosyl-tRNA synthetase" /protein_id="YP_003806267.1" /db_xref="GI:302341738" /db_xref="GeneID:9492737" /translation="MNLYDTYASRGFIEQCSDAQALRQLFQTERVTGYIGFDPTATSL HVGSLVPIISLMHLQRAGHRPLVLVGGGTGMVGDPSGKTEMRKLLTIEQISQNVAALQ NQLSRFLDFGPGQAQMINNADWLLKLNYIEFLRDTGRHFSVNRMLQQESVKLRLAQET GLSFIEFNYMILQAYDFMYLSHAMDCKLQMGGNDQWGNIVMGIDLARRVHGNTVHGLT FPLLTTASGQKMGKTHAGAIWLDPERTSPYEFYQYWVNTHDQDVERFLKLFTFLPLDQ IAELAALQGAAINQAKQTLAREVTTIVHGQQAAAEAQAAAQAAFAGQGDADGVPATNI DRATLQAGLPAFSLLVQTGLAKTSSDARRLISQGGAYVGQNRIDAFDQIISLAHANPD GAIWLRAGKKKHHRIVPV" misc_feature 330961..332187 /locus_tag="Deba_0297" /note="tyrosyl-tRNA synthetase; Validated; Region: PRK05912" /db_xref="CDD:180311" misc_feature 331051..331866 /locus_tag="Deba_0297" /note="catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805" /db_xref="CDD:173902" misc_feature order(331060..331062,331066..331074,331093..331095, 331099..331104,331465..331467,331477..331479, 331486..331488,331525..331527,331531..331536, 331543..331545,331621..331626,331645..331656) /locus_tag="Deba_0297" /note="active site" /db_xref="CDD:173902" misc_feature 331093..331104 /locus_tag="Deba_0297" /note="HIGH motif; other site" /db_xref="CDD:173902" misc_feature order(331174..331176,331183..331188,331348..331353, 331357..331365,331372..331377,331381..331392, 331396..331401,331453..331455,331459..331464, 331471..331476) /locus_tag="Deba_0297" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173902" misc_feature 331645..331659 /locus_tag="Deba_0297" /note="KMSKS motif; other site" /db_xref="CDD:173902" gene 333737..335281 /locus_tag="Deba_R0006" /db_xref="GeneID:9492738" rRNA 333737..335281 /locus_tag="Deba_R0006" /product="16S ribosomal RNA" /db_xref="GeneID:9492738" gene 335432..335510 /locus_tag="Deba_R0007" /db_xref="GeneID:9492739" tRNA 335432..335510 /locus_tag="Deba_R0007" /product="tRNA-Ile" /db_xref="GeneID:9492739" gene 335525..335600 /locus_tag="Deba_R0008" /db_xref="GeneID:9492740" tRNA 335525..335600 /locus_tag="Deba_R0008" /product="tRNA-Ala" /db_xref="GeneID:9492740" gene 335805..338802 /locus_tag="Deba_R0009" /db_xref="GeneID:9492741" rRNA 335805..338802 /locus_tag="Deba_R0009" /product="23S ribosomal RNA" /db_xref="GeneID:9492741" gene 338907..339023 /locus_tag="Deba_R0010" /db_xref="GeneID:9492742" rRNA 338907..339023 /locus_tag="Deba_R0010" /product="5S ribosomal RNA" /db_xref="GeneID:9492742" gene complement(339082..340866) /locus_tag="Deba_0298" /db_xref="GeneID:9492743" CDS complement(339082..340866) /locus_tag="Deba_0298" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_4880 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FDC5 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806268.1" /db_xref="GI:302341739" /db_xref="GeneID:9492743" /translation="MCAIMAPRFVAGAAFYDAAFWQCYQRLGYPRQWLEQGQAIEPHL SYVVSHPSWYMEEVPAPPLISIYELFARTVAAHRDEIAVVFMDKAITYGQLDDLISRY AGWLTALGLGRGDVAAAMLPNSLQHVIAFYGAAKAGVTHCPINVMYQADEVAYQLKDC GAKAIVALDLLYDKIRPSAGQLQGALVTNIKDWAADDCVVPAAIKFLWDIPKTPVDGA ADFFATLAQAAPLAQAAPCAPNDDVALLLYTAGTTGKSKGVIETHFNMVYNSLTHTHA FRTWGPREVNFSIMPMFHTAGYFLHLLPVFYQGGTVIPIPMFDVADCFRIIETYGVNV IFAPPTLFIALLQRPELVAASDLSSIKVTIGCGAPVPPALQEQWEAATGARLVNGWGM TETNSGGIISTPGIKDNITAIGVPLFSEVLIVGDDGKPAPRGQQGEIWYRGLQLARGY LNKPQQTAEAFLPDGWFRTGDRGYVDEADFVHFVDRIKDLIVASGYNVAPVEIEDVLY QHPAVAEAAVIGVADAYRGETIKAYVVLKAEAAEVDEAALLAHCKERLATFKAPRQVE IRQQLPKSAVGKILRRVLREEHEREAAR" misc_feature complement(339130..340686) /locus_tag="Deba_0298" /note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: CaiC; COG0318" /db_xref="CDD:30666" misc_feature complement(339301..340596) /locus_tag="Deba_0298" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature complement(339130..>339465) /locus_tag="Deba_0298" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(341010..342062) /locus_tag="Deba_0299" /db_xref="GeneID:9492744" CDS complement(341010..342062) /locus_tag="Deba_0299" /note="KEGG: mca:MCA0835 fic family protein; SPTR: Q60AL5 Fic family protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806269.1" /db_xref="GI:302341740" /db_xref="GeneID:9492744" /translation="MAQSKAGLAERFSLDPHTADALAQAERWLGRLAMLEALWPQWAG FARGPLAAMAALDQLQARGLDLEPVELLALGPEPRPTRPGKPLRLAVGHVASLRLAES APLDQALSPALVGAVLCGLEAPQLSRAQRQDPWELQNQPAGGALWGQARRWLAVGLPA LVVAGLTLASWEREGPDDPRRSAAGQVLLYGLAPRLGLPAAAFLRLRPALELASAQQP GGCQGLLHLVRRSGAWRTWLLVFLRACGQAARLASDSGLAAYQLQVENADLVRTWVRA PRHPLRLLDLLVSLPVIDLPTVAQQLGVTQRTAGLLVSKLLEMGLLVEVTGQRRGRRF AYSPLINLLWPPLAEA" misc_feature complement(341055..>341396) /locus_tag="Deba_0299" /note="Fic family protein [Function unknown]; Region: COG3177" /db_xref="CDD:32990" gene complement(342207..343562) /locus_tag="Deba_0300" /db_xref="GeneID:9492745" CDS complement(342207..343562) /locus_tag="Deba_0300" /EC_number="4.2.1.20" /note="COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); InterPro IPR001926:IPR006653:IPR006316; KEGG: glo:Glov_1213 tryptophan synthase subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; PRIAM: Tryptophan synthase; SPTR: B3E755 pyridoxal-phosphate dependent TrpB-like enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme" /codon_start=1 /transl_table=11 /product="pyridoxal-phosphate dependent TrpB-like enzyme" /protein_id="YP_003806270.1" /db_xref="GI:302341741" /db_xref="GeneID:9492745" /translation="MKPVKTLLSEQDMPKQWYNIQADLPTPLAPPYHPATMQIVTPEQ MNVIFPMSLIEQEMSDKRWWEIPDEVLQILALWRPTPLQRAYNLEKALGTPAKIYFKN ESVSPAGSHKPNTSVPQAYYNKKEGIKRIATETGAGQWGSAMSLATNMFGIECTVYMV RVSYDQKPYRKSMINTWGAEIFASPSTQTESGRKILAEDPDSPGSLGLAISEAVEDAA GRADTNYALGSVLNHVCMHQTIIGEEALRQFKAIGEKPDVVIGCIGGGSNFAGIAFPF LREKMAGMDVRVLAIEPASCPTVTKGVYAYDYGDMAHMAPIVMMHTLGHTFMPPSIHA GGLRYHGMAPTVSRVVEDGLVEARAITQLECFESGVLFARTEGIIPAPESTHAIRGAV EEALIAKEEGKEKTILFNLSGHGHFDMSSYDAYFAGKLHNYRYPQELVDEALKHLPKV G" misc_feature complement(342297..343418) /locus_tag="Deba_0300" /note="Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446" /db_xref="CDD:107207" misc_feature complement(342339..343325) /locus_tag="Deba_0300" /note="Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031" /db_xref="CDD:30381" misc_feature complement(order(342327..342329,342414..342416, 342759..342773,342876..342878,343146..343148, 343227..343232)) /locus_tag="Deba_0300" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107207" misc_feature complement(343227..343229) /locus_tag="Deba_0300" /note="catalytic residue [active]" /db_xref="CDD:107207" gene 344215..344970 /locus_tag="Deba_0301" /db_xref="GeneID:9492746" CDS 344215..344970 /locus_tag="Deba_0301" /note="COGs: COG0565 rRNA methylase; InterPro IPR001537:IPR004384; KEGG: dma:DMR_35690 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: C4XLC1 Putative RNA methyltransferase; PFAM: SpoU rRNA methylase family; TIGRFAM: RNA methyltransferase, TrmH family, group 1" /codon_start=1 /transl_table=11 /product="tRNA/rRNA methyltransferase (SpoU)" /protein_id="YP_003806271.1" /db_xref="GI:302341742" /db_xref="GeneID:9492746" /translation="MDLALLDLLQNVFVVLVRPRVPENIGAAARAVANMGLGGLRLVD PADLTDKPMRALATAQGQRVLESMTVSDSLAAALADCVAAAATTARLGERRGALIPPR QAAPEIMTWARRGPVAVVFGPEDRGLSHEQVDLCRLSINIPTSQASSLNLAQSVIVLA YELRLAAENGAGLERRKLPTPAPLGEIQALLAHLQEAFVNIGHLDANNPAHFMRLLKA PLERAAMTSKEVRAWRGVARQVNWLHGRLARKD" misc_feature 344236..344940 /locus_tag="Deba_0301" /note="rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: LasT; COG0565" /db_xref="CDD:30911" misc_feature 344245..344697 /locus_tag="Deba_0301" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene 345029..345223 /locus_tag="Deba_0302" /db_xref="GeneID:9492747" CDS 345029..345223 /locus_tag="Deba_0302" /note="SPTR: Q56795 Juglandis copper-resistance genes" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806272.1" /db_xref="GI:302341743" /db_xref="GeneID:9492747" /translation="MAKPICKVDKRHGVPAVLGALVSLTGGNDVYYTATISDGKRTVR ESAATAAQAEAKAWAAWKRG" gene complement(345220..346149) /locus_tag="Deba_0303" /db_xref="GeneID:9492748" CDS complement(345220..346149) /locus_tag="Deba_0303" /note="COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: hch:HCH_04023 Co/Zn/Cd cation transporter; PFAM: cation efflux protein; SPTR: Q2SF35 Predicted Co/Zn/Cd cation transporters; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter" /codon_start=1 /transl_table=11 /product="cation diffusion facilitator family transporter" /protein_id="YP_003806273.1" /db_xref="GI:302341744" /db_xref="GeneID:9492748" /translation="MAGGSKKVIYAALAGNALIALTKFGAAALTGSSAMLSEGVHSLV DTGNQLLLLHGLRRAQRPADARFPFGHAREVYFWSFVVAILIFGLGAGVSIYEGVLHC LEPTPLTSPVYSFIVLGLALIFEGVAWTMALGEFRRKKGGQGYIRAVRRSKDPALMVV LFEDSAAMAGLLAAFGGVALYALTGNHYFDGGASIVIGLILAGTATWLAVETKGLLIG EGAMPEVLAQVRGIVLAAPEVVGLGRLLTMHLGPEDVLLNLALDFDDRLDAGQIEAAV ARLDQGIRAALPQIKQVFIEARSSADDRAEAPV" misc_feature complement(345262..346098) /locus_tag="Deba_0303" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" gene complement(346161..347891) /locus_tag="Deba_0304" /db_xref="GeneID:9492749" CDS complement(346161..347891) /locus_tag="Deba_0304" /note="COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR011622:IPR011623:IPR000160:IPR018062; KEGG: dal:Dalk_2685 periplasmic/7TM domain sensor diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; SMART: GGDEF domain containing protein; SPTR: B8FIY6 Periplasmic/7TM domain sensor diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: 7TM diverse intracellular signalling; GGDEF domain; 7TMR-DISM extracellular 2; TIGRFAM: diguanylate cyclase (GGDEF) domain" /codon_start=1 /transl_table=11 /product="periplasmic/7TM domain sensor diguanylate cyclase" /protein_id="YP_003806274.1" /db_xref="GI:302341745" /db_xref="GeneID:9492749" /translation="MPRRLAIVVFAALLALPRLAEAASLVVSPRMTDLNLSAAMEYLP DPHNNLSLAQVSAPPLRQAFRPGGPTGLVLPKDIDYYWLRLRVRAADDWPDHGPGWVL FSDNIYLQELTLHQPPGPDGRRHVQAGGGMYQPFAWRQLAGRYPAFLLPRPQPGQELE IFLRMRTVPVIPIAFFGDSLAAHTAGALADDYVFGLCFGVLLTMIIYNLFLGISLRDR AYLVYVLYIFGMLAAGLFMYGQAQMLWDFQSELYGRLFWFFMGWLTCMAYAFMRVFLG LRPLAPRLDALLRACMAYGLVISLLGLFAQYHLAWALTTASGFFSPVLAVLAGVMALR AGYRPARYYLAAWSILALATFIFVLREVGLIDGGDLVRRSLLVGSALESMLLSLALAD RIRLLRQEKDILRHRALLLGRLSQTDGLTGLFNKRHFDQELLAQVRRASESGAPLCLL MLDVDDFKAFNDNHGHPAGDQVLQALAETIRASLRQADAAFRYGGEEFAVLLPDMSAE QAAAVGQRIRQTFACQSFLTAHGAVSCGVSLGLACLGQGEDAASLLRRADAALYQAKR QGKNRLATAG" misc_feature complement(347391..347792) /locus_tag="Deba_0304" /note="7TMR-DISM extracellular 2; Region: 7TMR-DISMED2; pfam07696" /db_xref="CDD:191816" misc_feature complement(346758..347318) /locus_tag="Deba_0304" /note="7TM diverse intracellular signalling; Region: 7TMR-DISM_7TM; pfam07695" /db_xref="CDD:148994" misc_feature complement(346173..346646) /locus_tag="Deba_0304" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(346404..346406,346533..346535)) /locus_tag="Deba_0304" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(346401..346412,346416..346418, 346482..346484,346494..346496,346506..346511, 346518..346520)) /locus_tag="Deba_0304" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(346344..346346,346428..346430)) /locus_tag="Deba_0304" /note="I-site; other site" /db_xref="CDD:143635" gene 348124..349764 /locus_tag="Deba_0305" /db_xref="GeneID:9492750" CDS 348124..349764 /locus_tag="Deba_0305" /note="COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873:IPR020845; KEGG: mhu:Mhun_2392 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q2FT08 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806275.1" /db_xref="GI:302341746" /db_xref="GeneID:9492750" /translation="MAQFETGRTAEYHRIFQQFAWNVPADFNFGFDVVDTWAADRTKL AVLSLSEDGEHAEHMSFFELSRLSDRFANVLVDLGLKKGDRVLIILHSIPQWYVAMIA MFKLGVVPMPGTVLLTAKDISYRVNRAEAAMVITDLDHVARVDEVARQCPTLKHKLVV GDKAPGWVDYEAAMAAAPARLERGCLGQVSPADPMLLYFTSGTTGQPKMVLHSHAYPL GHEVTARYVLGLKPTDLHWTISETGWAKAAWGKLFGQMLVGAAILQRKSASGFSPENT LKAMERYGVTTFCAPPTVYRMLIQQDLKAYNFTLRRCLSAGEPMNPEVIKAWRDGTGL DIYDFYGQTETVSLISNYEFMPLKYGSVGLPTPGHDMRVVDENGVELAPNEEGYIALY LGGQRPPGLMMEYWRDDEAMAASFRGDFYYTGDRAYRDEEGYFWFVGRNDDIIKSSGY RIGPFEVESVLLEHPAVAECAVVGAPDPNGVRGVVVKAFVVLAKGLAPSDELTKEIQD HVKTSTAPYKYPRIIEYRQTLPKTISGKILRRELRAEK" misc_feature 348184..349755 /locus_tag="Deba_0305" /note="Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]; Region: Acs; COG0365" /db_xref="CDD:30714" misc_feature 348310..349752 /locus_tag="Deba_0305" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(349842..350609) /locus_tag="Deba_0306" /db_xref="GeneID:9492751" CDS complement(349842..350609) /locus_tag="Deba_0306" /note="COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: bja:bll3651 O-antigen export system ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q89P32 RfbA protein; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806276.1" /db_xref="GI:302341747" /db_xref="GeneID:9492751" /translation="MAHIRLSNVSVEFPVYKLGDRRASGGGQRKKFASGGQIFRGKAS RVMVRALEDVNLEIAENERVGLLGLNGAGKTTLLRTVAGLRPAARGVVDTQGGVQALF NIHAGLDGGRTGYENIFYMGMLRGLSKKQTEDIIPDIEEFTELGEYLNMPVSTYSQGM QVRLGFALVTAINPEILLLDEAIGTGDAVFIQKVRARFQKLMNTASIVLIASHSLDVL RSTCNRLLWLDRGRVKIDDTTDNVLKAYMEALLNPDA" misc_feature complement(349860..350609) /locus_tag="Deba_0306" /note="ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagH; COG1134" /db_xref="CDD:31329" misc_feature complement(349899..350600) /locus_tag="Deba_0306" /note="ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides...; Region: ABC_KpsT_Wzt; cd03220" /db_xref="CDD:72979" misc_feature complement(350385..350408) /locus_tag="Deba_0306" /note="Walker A/P-loop; other site" /db_xref="CDD:72979" misc_feature complement(order(349971..349973,350067..350072, 350178..350180,350382..350390,350394..350399)) /locus_tag="Deba_0306" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72979" misc_feature complement(350178..350189) /locus_tag="Deba_0306" /note="Q-loop/lid; other site" /db_xref="CDD:72979" misc_feature complement(350115..350144) /locus_tag="Deba_0306" /note="ABC transporter signature motif; other site" /db_xref="CDD:72979" misc_feature complement(350067..350084) /locus_tag="Deba_0306" /note="Walker B; other site" /db_xref="CDD:72979" misc_feature complement(350049..350060) /locus_tag="Deba_0306" /note="D-loop; other site" /db_xref="CDD:72979" misc_feature complement(349965..349985) /locus_tag="Deba_0306" /note="H-loop/switch region; other site" /db_xref="CDD:72979" gene complement(350621..351439) /locus_tag="Deba_0307" /db_xref="GeneID:9492752" CDS complement(350621..351439) /locus_tag="Deba_0307" /note="COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: cef:CE0178 O-antigen export system permease protein; PFAM: ABC transporter; SPTR: C0XTW7 ABC superfamily ATP binding cassette transporter, permease protein; manually curated; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806277.1" /db_xref="GI:302341748" /db_xref="GeneID:9492752" /translation="MAAGGIGPNQLWTCRMPLTDIADGWKRRSNWAYLAYSDLKHNYN RTLLGPLWASLQWGLTIVIKGFVFALIFKVELASYLPFLTVGLLLWQWMSNMMTQGVT VFITNRAIIESISMPMSFHVFRSVFFLFLYFCNHMVVFAIVAVVFRVAVSAVSFLAIG GVALIYLSGLCVVAVFGVAGARIRDVIPLVGALVNLGFFVTPIMWQREMLGARTWIAD WNPLYHYIELVRAPLLGQAPAELSWWVAGGCTAGLLLVALAVFGRYRKQIPYWL" misc_feature complement(350708..351397) /locus_tag="Deba_0307" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene complement(351556..351651) /locus_tag="Deba_R0012" /db_xref="GeneID:9492753" tRNA complement(351556..351651) /locus_tag="Deba_R0012" /product="tRNA-Ser" /db_xref="GeneID:9492753" gene complement(351722..352327) /locus_tag="Deba_0308" /db_xref="GeneID:9492754" CDS complement(351722..352327) /locus_tag="Deba_0308" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mta:Moth_1443 UbiE/COQ5 methyltransferase; PFAM: methyltransferase type 11; SPTR: Q2RII5 UbiE/COQ5 methyltransferase; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003806278.1" /db_xref="GI:302341749" /db_xref="GeneID:9492754" /translation="MNREKAAFFDAQVDAPWAMAAYGPDEVPKIARLRQAAAIAPGMA VLEPGCGAGRLSQLLGQWVGPTGRVLAMDISPAMVAACQRRTQNLPQVTALHLALEQY DGPPGAFQRVVCHQVFPHFDDKPLALACLRRLLAPGGSLLIVHFIDWATINDHHRKAG TVVEGDLMPPLAAMAPMIEAVGLRVDLFADDELGYLLRAKG" misc_feature complement(351887..352195) /locus_tag="Deba_0308" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(351983..351985,352034..352036, 352037..352039,352106..352111,352166..352186)) /locus_tag="Deba_0308" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(352324..353439) /locus_tag="Deba_0309" /db_xref="GeneID:9492755" CDS complement(352324..353439) /locus_tag="Deba_0309" /note="COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: pca:Pcar_3056 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: periplasmic binding protein; SPTR: Q3A016 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="YP_003806279.1" /db_xref="GI:302341750" /db_xref="GeneID:9492755" /translation="MIHRHRPARRPWLAAFVAALLLIAASAASAHETTVTDCLGRAID LNRPNQRIVCLGPGALRLIVYLGAHERVVGVEALERDFPDGRPYILAQPELTKLPVIG PGGVSAIGRMPDMEALLAVAPQLIFVTYMDRQTAQRLQAQSGAQVVALDYGPFASVDT AALFASLRVAGAALGRRQRAAEIIALTQGWLDDLARRAKGAPDPGPVYVGGVGFKGVQ GLESSDADYAPFAWLGLDNAAKLAGGRGHCFVGREKLLTIDPPTIFMDAAGMGLLAGD WAKRPEFYQALSAFGAGRVFVLHPFNWYVTNLGVAVADAYAIGKALWPRRFADVGPEQ KAAEIHRALLGVSVQGAMAKKYGKLGEIPAFIKKGAQ" misc_feature complement(352519..353301) /locus_tag="Deba_0309" /note="Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding...; Region: HemV-2; cd01147" /db_xref="CDD:29750" misc_feature complement(352540..353286) /locus_tag="Deba_0309" /note="Periplasmic binding protein; Region: Peripla_BP_2; pfam01497" /db_xref="CDD:144914" misc_feature complement(353152..353154) /locus_tag="Deba_0309" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:29750" misc_feature complement(352390..>352608) /locus_tag="Deba_0309" /note="Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface...; Region: TroA-like; cl00262" /db_xref="CDD:193735" gene complement(353436..354206) /locus_tag="Deba_0310" /db_xref="GeneID:9492756" CDS complement(353436..354206) /locus_tag="Deba_0310" /note="COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: sat:SYN_00216 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q2LY12 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806280.1" /db_xref="GI:302341751" /db_xref="GeneID:9492756" /translation="MLRVEGLQYAYNGRPVLAGVSFELPAGQAMGVLGVNGAGKSTLL RCLCRVIQPGRARVLLEGRDIASLNGAALARRVAHVAQGRPQCALTVAELVMLGRKPH MSWGPGPHDRRVVGQVLERLNLSHLARRPMDRLSGGEAQKALIARALAQEPKLLLLDE PTSNLDLANQLELMEILRHEVRDHGLCALVCLHDLNLALRGMDRLLLLKNGQVHALVA PEELTPAIIAQVYGVEADIARVGDSPVVLPRRRQENRP" misc_feature complement(353454..354206) /locus_tag="Deba_0310" /note="ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120" /db_xref="CDD:31317" misc_feature complement(353562..354200) /locus_tag="Deba_0310" /note="ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC...; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214" /db_xref="CDD:72973" misc_feature complement(354084..354107) /locus_tag="Deba_0310" /note="Walker A/P-loop; other site" /db_xref="CDD:72973" misc_feature complement(order(353628..353630,353727..353732, 353856..353858,354081..354089,354093..354098)) /locus_tag="Deba_0310" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72973" misc_feature complement(353856..353867) /locus_tag="Deba_0310" /note="Q-loop/lid; other site" /db_xref="CDD:72973" misc_feature complement(353775..353804) /locus_tag="Deba_0310" /note="ABC transporter signature motif; other site" /db_xref="CDD:72973" misc_feature complement(353727..353744) /locus_tag="Deba_0310" /note="Walker B; other site" /db_xref="CDD:72973" misc_feature complement(353709..353720) /locus_tag="Deba_0310" /note="D-loop; other site" /db_xref="CDD:72973" misc_feature complement(353622..353642) /locus_tag="Deba_0310" /note="H-loop/switch region; other site" /db_xref="CDD:72973" gene complement(354206..355294) /locus_tag="Deba_0311" /db_xref="GeneID:9492757" CDS complement(354206..355294) /locus_tag="Deba_0311" /note="COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: sat:SYN_00217 ABC-type Fe3+-siderophore transport system, permease component; PFAM: transport system permease protein; SPTR: Q2LY04 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="YP_003806281.1" /db_xref="GI:302341752" /db_xref="GeneID:9492757" /translation="MAGMGRGGPDRDNLTQTISRPWPMLAGLAAALVVLAAFAASHGS YALSPGQFWQALWGDGPPRLGVVLWQIRLPRIAAAIVCGWGLGLAGLALQTLLHNPLA SPFTLGFSHAAAFGAALAIVCLDAGDQLVTATRSAAPAEMFLQGPLTISLGAFLATIA ASAIILALARQKAMSPGAVVLVGVALSSLFAAGTVLVQYLATDSEIAAVVFWSFGDVA RSSWREIGLTLAPTALATAYLAANGWAMNALLAGEETAAGLGVNGPRLRFWGMTLAAL IIALATAFNGVIGFLGLLAPHVSRMLVGDNHALLLPFSCLTGALLLLLADTMGRLLLV SGAMPVGVLTSFLGAPLFLYLLIKRQDD" misc_feature complement(<354968..355168) /locus_tag="Deba_0311" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cl00462" /db_xref="CDD:193828" misc_feature complement(354227..355000) /locus_tag="Deba_0311" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature complement(order(354227..354229,354236..354241, 354248..354250,354257..354262,354269..354271, 354425..354427,354653..354655,354662..354667, 354701..354703,354707..354712,354719..354721, 354728..354733,354740..354745,354752..354757, 354761..354763,354977..354979,354992..354994, 354998..355000)) /locus_tag="Deba_0311" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(354374..354376,354395..354397, 354518..354526,354530..354547,354551..354556, 354560..354568,354572..354577,354995..355000)) /locus_tag="Deba_0311" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature complement(order(354278..354280,354305..354307, 354437..354439,354449..354451,354623..354625, 354701..354703)) /locus_tag="Deba_0311" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene complement(355302..355853) /locus_tag="Deba_0312" /db_xref="GeneID:9492758" CDS complement(355302..355853) /locus_tag="Deba_0312" /note="COGs: COG1720 conserved hypothetical protein; InterPro IPR001378; KEGG: dal:Dalk_5079 protein of unknown function UPF0066; PFAM: protein of unknown function UPF0066; SPTR: B8FDW9 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: conserved hypothetical protein TIGR00104" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806282.1" /db_xref="GI:302341753" /db_xref="GeneID:9492758" /translation="MKTIDIAHAATIDEAYHVWPIGRVHSPLQKPSLKGARQGISRQG AHVGQVLRENDVDSQIVIDPRYLPLLEGLEQFSHLVVIYWPHLLPEEGRQAQKVHPAG FEELPLTGVFATCSPARPNPLLVTVARLLAVDGNVLTIHGLEAVDGTPVLDIKPYNTH YLAREDVRAPQWMDELNRLYDGM" misc_feature complement(355383..355796) /locus_tag="Deba_0312" /note="Escherichia coli YaeB and related proteins; Region: UPF0066; cd09281" /db_xref="CDD:187753" misc_feature complement(order(355383..355400,355485..355487, 355491..355493,355497..355499,355509..355526, 355602..355604,355614..355616,355635..355637, 355641..355649,355791..355796)) /locus_tag="Deba_0312" /note="homodimer interaction site [polypeptide binding]; other site" /db_xref="CDD:187753" misc_feature complement(order(355407..355409,355422..355424, 355479..355481,355485..355487,355509..355511, 355596..355601,355605..355607)) /locus_tag="Deba_0312" /note="cofactor binding site; other site" /db_xref="CDD:187753" gene complement(355866..357959) /locus_tag="Deba_0313" /db_xref="GeneID:9492759" CDS complement(355866..357959) /locus_tag="Deba_0313" /note="COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: ppd:Ppro_1253 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A1HNQ0 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003806283.1" /db_xref="GI:302341754" /db_xref="GeneID:9492759" /translation="MVGKKLALLVCCLLAALALARPALADAELPPVEVKASLTGSDSY ASPVAGVIDPGRQIPAGQITDLTDLLKLGNSIYIQESSYGRQLFLRGLTDQDMRVLID GSPMGQLGKYYAYSFPWESIPLENIERIEVIRGAGSVEFGNTLAGTINIITKKGARQL RSTAALNYGSFDDFKVNASNSGSQGKFDWFVGGSYRDRGAYLENNDLKQYNVSGAVGV DLGQAGSLRLTGFATRREEGLPLDDRINWNIWSNSQGYADGSKTKTDENTIIADYKSA WVDLSASYFQQKRDDDCYKNGWVTGDYQDYALDFKTPSVKAKLHHTHGDHTWKIGADY TYGDAVADWVYYNDGTERIEWKQDLAGVFAEDTWRLLPQLNLTMGLRYDYYKNTIDSD RGYINPGSDISDEGLSPRASLTYDLNEDWQAFAFAGHVFKAPTMADLYRWHSNHELIS FAGRAVLRAYYGLAQPAGAPASLIPAQYIQGWKNMIGDLEATKGWDYELGLRKSGQNH ALQINFFYQDLDDYVNIYPVSYPPTYNVDNVGLWGMELAGVYTFCQYLEAEAIYTWMA NQTSGDPITEKLYGKNELFNAPDHVLNLTLRSRPLKPLLLEWQSQFVSSRFAGGAPGV PPQVAATTPKYEPMYELDPYWLHNIRASYTVRCQKTDVTFSAAVENIFNEECYIRLDY PLPGTLYYGGVSLAF" misc_feature complement(355899..357797) /locus_tag="Deba_0313" /note="TonB-dependent heme/hemoglobin receptor family protein; Region: TonB-hemin; TIGR01785" /db_xref="CDD:162536" misc_feature complement(355869..357791) /locus_tag="Deba_0313" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature complement(order(357501..357527,357558..357590, 357636..357638,357645..357665,357684..357701, 357729..357758,357786..357791)) /locus_tag="Deba_0313" /note="N-terminal plug; other site" /db_xref="CDD:73259" gene complement(358178..359743) /locus_tag="Deba_0314" /db_xref="GeneID:9492760" CDS complement(358178..359743) /locus_tag="Deba_0314" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR009082:IPR 004358:IPR005467; KEGG: dal:Dalk_1275 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: B8F9N2 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_003806284.1" /db_xref="GI:302341755" /db_xref="GeneID:9492760" /translation="MTSLTPEMFDCPSPIGDPVHDRQTADNIRALMNRPLISLRLQIY LGFLAAFIMAAGVAASMVYNFHRMERSTRFLEIVSDYVMEVEQARRYEKNYLLYGRGL DEALEHIFTAEQILSRNAGELAAVMGGDWSQVMSPKLMSYQGLLEKLAALKNAPPAPE AELARHDLQKRMRAEGQGLVSDASALLGGERAALAEANRNARRVLFYALALLLLALVA NAYLLGTRMLRAIKHLGEHAASIAMGDFRPITPTRFYRDEFTDLAVSINTMVEELQHR EAVLIQSHKMRAVGTLTAGVAHELNNPLNNITITAHVLQEDYDSLDDAERREMIGDVV AEANRARKIISNLLDFARESSSRIEPLDLPSLLRETIYLASNQIKLSGIKIELQASDN LPRVHGDSQQLRQVFLNLILNAIDASAKGGKIQVMLAPADEPHYVAVKVIDFGAGIPE HILPSVFDPFFTTKARYKGTGLGLSVSQGIVAKHGGRIMVYSQPGKGATFTVILPVTT IPAQLDKPDAAGA" misc_feature complement(358910..359068) /locus_tag="Deba_0314" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(358688..358888) /locus_tag="Deba_0314" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(358703..358705,358715..358717, 358724..358726,358736..358738,358745..358747, 358757..358759,358814..358816,358823..358825, 358835..358837,358844..358846,358856..358858, 358868..358870)) /locus_tag="Deba_0314" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(358850..358852) /locus_tag="Deba_0314" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(358232..358537) /locus_tag="Deba_0314" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(358244..358246,358250..358255, 358268..358270,358274..358276,358322..358333, 358400..358405,358409..358411,358415..358417, 358421..358423,358496..358498,358505..358507, 358517..358519)) /locus_tag="Deba_0314" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(358505..358507) /locus_tag="Deba_0314" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(358325..358327,358331..358333, 358403..358405,358409..358411)) /locus_tag="Deba_0314" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(359762..360172) /locus_tag="Deba_0315" /db_xref="GeneID:9492761" CDS complement(359762..360172) /locus_tag="Deba_0315" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dat:HRM2_07150 sigma-54 dependent DNA-binding response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C0QJH6 Sigma-54 dependent DNA-binding response regulator; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806285.1" /db_xref="GI:302341756" /db_xref="GeneID:9492761" /translation="MSQLLEVLLLDDEPIVGRRLAPALAKIGCAVEVFEDPEKALARI AKKEFQVVVTDIRMDEIDGLQVLEFVHERWPNCKVIMITGYAMMSLAREAMDKGAFDF IAKPFKPDDLREVIAKAAQALGQPLSAPDAQTGQ" misc_feature complement(359825..360154) /locus_tag="Deba_0315" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(359813..360151) /locus_tag="Deba_0315" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(359855..359860,359867..359869, 359924..359926,359984..359986,360008..360010, 360137..360142)) /locus_tag="Deba_0315" /note="active site" /db_xref="CDD:29071" misc_feature complement(360008..360010) /locus_tag="Deba_0315" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(359984..359992,359996..360001)) /locus_tag="Deba_0315" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(359852..359860) /locus_tag="Deba_0315" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(360233..361027) /locus_tag="Deba_0316" /db_xref="GeneID:9492762" CDS complement(360233..361027) /locus_tag="Deba_0316" /note="KEGG: dol:Dole_2397 hypothetical protein; SPTR: A8ZVL4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806286.1" /db_xref="GI:302341757" /db_xref="GeneID:9492762" /translation="MEMPIIAISSDSPQQETLAARGVADSLGYALVGREILGQIAAEH GVSEKDLLRALDEPPGFFAMRARQRQALLTHVRAACLERLSADNVVCVGLGAHAYLAG VSHALRVRLLAGPGDGQGQDKPDRRQQERRRRLSLEAFGLDDTDPDNYDMVLSLASLE PAQAVAIIAEAAGYPKFQAMTYSRKCLADKALAAKVRQRLLAKFPEAKVDVSDGGVVV RVAAIGRGQRKKQLAVRELASQAPGVNYVEVHVINDFFGSAAQSGR" gene complement(361074..361877) /locus_tag="Deba_0317" /db_xref="GeneID:9492763" CDS complement(361074..361877) /locus_tag="Deba_0317" /note="COGs: COG1102 Cytidylate kinase; KEGG: dol:Dole_2398 response regulator receiver protein; SPTR: A8ZVL5 Response regulator receiver protein" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806287.1" /db_xref="GI:302341758" /db_xref="GeneID:9492763" /translation="MAIITISRGSYSMGRAVAEAVAQRLGYRLTSRDVLLEASDRFRI PEVKLVRAIHDAPSILERFTHGKQRYLAYIQSALTSQAKADNLVYHGLAGHLLLPGAP HVLRVRIIADMESRVAAEMARENLSAAEARALLQKDDAERRKWTQSLYGVDPWDAALY DLVLHIGRLSQETAADLIVQAAQAPEMQTTPQAQRVMDDLALACQIKAELVRDDVFDV AVASEFGNVVVYAAKGARLEDKLTAIAGRLAGINHIEARAGQAPPPEAV" misc_feature complement(361335..361871) /locus_tag="Deba_0317" /note="Cytidylate kinase [Nucleotide transport and metabolism]; Region: Cmk; COG1102" /db_xref="CDD:31299" gene complement(361905..363710) /locus_tag="Deba_0318" /db_xref="GeneID:9492764" CDS complement(361905..363710) /locus_tag="Deba_0318" /note="COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR004680:IPR006037:IPR016040; KEGG: dol:Dole_2399 TrkA domain-containing protein; PFAM: TrkA-C domain protein; Citrate transporter; SPTR: A8ZVL6 TrkA-C domain protein; PFAM: TrkA-C domain; Citrate transporter" /codon_start=1 /transl_table=11 /product="TrkA-C domain protein" /protein_id="YP_003806288.1" /db_xref="GI:302341759" /db_xref="GeneID:9492764" /translation="MPQLTPEMIMVMAMIAVAVFLFVVEWVRVDVVAIIMMVVLPLLG LVTPKEAFSGLSSNAVVSIIAVIIIGAGLDRTGVINRLVGPIVRLAGKSQSRIIIFIS LTVAGISSFMQNIGAAALFLPAVQRISKNLKIPISKLLMPIGFSAILGGTITLVGSSP LILLNDLIVPFNLRPFGLFEVTPVGLALVASGIGCFVLFGRFILPGGKADDSADQAAR PAAAQITDDLGGPWELITPDDFTHYREPVTVDGLRRRYLVNVVGLTEPPDFRVMNPAP DQQIRSRACLAVHGQERDVRRMAEEEGMTLRPELDVFKNALAEHASGVVEAVVAPRSA LAGKTLNQLNLADRFRVTPLAVHRQGETYRAELGQIPLRVGDAILLQGSWKRLQTLHA EGGLLFTTPIDAEQLRPEKAIFAGLWLAVALVMILVFNIQLSVCLMTGALGMILTKVL TIDEAYASVDWRTVFLLAGLIPLGIATEKSGAAAWIAHAVLGAIGVVPPIVLLAVIGL LSTAFTLVISNVGATVLLVPLVVNMALAAGADPRMAAMVVGLATSNSFILPTHQVNAL YMGPGRYRSVDFMKAGGLISVVFLAVMIAMLYLFF" misc_feature complement(<363099..363653) /locus_tag="Deba_0318" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" misc_feature complement(order(363099..363110,363123..363167, 363231..363302,363312..363365,363369..363419, 363489..363542,363585..363626,363645..363653)) /locus_tag="Deba_0318" /note="transmembrane helices; other site" /db_xref="CDD:29728" misc_feature complement(362541..362741) /locus_tag="Deba_0318" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" misc_feature complement(361908..>362477) /locus_tag="Deba_0318" /note="Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; Region: SLC13_permease; cd01115" /db_xref="CDD:73247" gene complement(363743..364171) /locus_tag="Deba_0319" /db_xref="GeneID:9492765" CDS complement(363743..364171) /locus_tag="Deba_0319" /note="InterPro IPR014729; KEGG: dol:Dole_2400 hypothetical protein; SPTR: A8ZVL7 Putative uncharacterized protein; PFAM: Universal stress protein family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806289.1" /db_xref="GI:302341760" /db_xref="GeneID:9492765" /translation="MPRAILVVMENEIVCAQALDFAAELAQRLAAEAKLLMVVEPPPA ANRQPELERRAVQALDRLASRFVERGVAAEATLRLGQPRRELLRFLAQRPPFQALIWG SGHELAGGRHGHWLEKTAGLLECPLWTVASRDDGSEGRGS" gene complement(364423..365769) /locus_tag="Deba_0320" /db_xref="GeneID:9492766" CDS complement(364423..365769) /locus_tag="Deba_0320" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR011006:IPR 009057:IPR003593:IPR020441; KEGG: dol:Dole_2401 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806290.1" /db_xref="GI:302341761" /db_xref="GeneID:9492766" /translation="MTAQITGHILLVDDEATALKALRRILEKQGHRVHTCQNPARALE ALAELPIDVLVSDLKMPLMDGMELLDRAKGLAPQVEVIIVSGFASLDGAVEAAQKGAC HFLAKPVTPQQMRDKVQEALGRKRLRDQALAREAAAGPAIVGQSPPMRRLAELIAQIA PTDCTVLIQGQSGTGKELAAKAIHAQSRRAKGPLVAVNCAAISPSLLESELFGHEKGA FTGAEQTKIGLLEAAHGGTIFFDEIGETPPAMQVKLLRALQERQFMRVGGRAPLSVDL RVLAATARDLALEARLGAFRQDLFYRLSVVELTMPPLAQRRSDIPLLAQHFLEEFGRR MEKSVDGFDPAALELLRAYAFPGNVRELRNIVERAMALCQGRLILPRDLPPDLAAVRL SSLQRQGGPVATLEEQERAHIEQALRQTGGMRAKAAALLGIDRVSLWRKMKKHGLA" misc_feature complement(364429..365763) /locus_tag="Deba_0320" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature complement(365404..365742) /locus_tag="Deba_0320" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(365446..365451,365458..365460, 365515..365517,365575..365577,365599..365601, 365728..365733)) /locus_tag="Deba_0320" /note="active site" /db_xref="CDD:29071" misc_feature complement(365599..365601) /locus_tag="Deba_0320" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(365575..365583,365587..365592)) /locus_tag="Deba_0320" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(365443..365451) /locus_tag="Deba_0320" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(364852..365325) /locus_tag="Deba_0320" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(365239..365262) /locus_tag="Deba_0320" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(364921..364923,365047..365049, 365236..365259)) /locus_tag="Deba_0320" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(365044..365061) /locus_tag="Deba_0320" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(364864..364866) /locus_tag="Deba_0320" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(364435..364560) /locus_tag="Deba_0320" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(365893..366174) /locus_tag="Deba_0321" /db_xref="GeneID:9492767" CDS complement(365893..366174) /locus_tag="Deba_0321" /note="KEGG: dol:Dole_0574 hypothetical protein; SPTR: A8ZU72 Conserved hypothetical cytosolic protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806291.1" /db_xref="GI:302341762" /db_xref="GeneID:9492767" /translation="MPGFDGTGPMGAGPLTGGGFGRCGGGAALGRPGRGRGYRCAGGR GGWGGGGGRGFYTAPAAQDEARALKARADFLRGDLDAIQRRLSELEPAE" gene complement(366224..366433) /locus_tag="Deba_0322" /db_xref="GeneID:9492768" CDS complement(366224..366433) /locus_tag="Deba_0322" /note="KEGG: hypothetical protein; SPTR: A0E9P2 Chromosome undetermined scaffold_85, whole genome shotgun sequence" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806292.1" /db_xref="GI:302341763" /db_xref="GeneID:9492768" /translation="MPYRDGTGPAGQGPTGKGFGPCGQNQTKDGQPGQIGGGQGRGQG RGQGQGRGRGGKSRRQGQGGAGQGR" gene complement(366435..366866) /locus_tag="Deba_0323" /db_xref="GeneID:9492769" CDS complement(366435..366866) /locus_tag="Deba_0323" /note="COGs: COG1342 DNA-binding protein; InterPro IPR002852; KEGG: rru:Rru_A1194 hypothetical protein; PFAM: protein of unknown function DUF134; SPTR: Q2RV50 UPF0251 protein Rru_A1194; PFAM: Protein of unknown function DUF134" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806293.1" /db_xref="GI:302341764" /db_xref="GeneID:9492769" /translation="MSPRPRKYRTIAQHPVATFYKPQGAPLGALQSATLSVEGLEALR LADAEGQDQASAARAMDVSPATFCRILAEARAVVARALSNGWAIRIEGGAYRLAEAAA PGAQERPWGGGRGGGRGRGLGRRRGWADDAPPDQTPTDKED" misc_feature complement(366570..366860) /locus_tag="Deba_0323" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cl01055" /db_xref="CDD:197420" gene complement(367028..367255) /locus_tag="Deba_0324" /db_xref="GeneID:9492770" CDS complement(367028..367255) /locus_tag="Deba_0324" /note="InterPro IPR010305; KEGG: dsa:Desal_2293 protein of unknown function DUF903; PFAM: protein of unknown function DUF903; SPTR: C6BWR9 Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF903)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806294.1" /db_xref="GI:302341765" /db_xref="GeneID:9492770" /translation="MHSKLTIAAICLGLALLAGCATPMHTITTTSGKQYVAVGDLDFD DDTKTYTFTDPEGHTVILNRNVISEIRRKTD" gene complement(367357..367797) /locus_tag="Deba_0325" /db_xref="GeneID:9492771" CDS complement(367357..367797) /locus_tag="Deba_0325" /note="COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: dal:Dalk_2350 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: B8FAV7 thioesterase superfamily protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003806295.1" /db_xref="GI:302341766" /db_xref="GeneID:9492771" /translation="MDQARRAFLMNDFRQAFTAHLGFEALDAAEGHFASTVALTPALL QQDGLAHAGVVATLADHTAGYAAYTLVGPESRILTVEFKINFLKPAAGAALYCQAQVI SRGRTILPAESAVWAVNADGDRKLAAKAMVTLMVVPTESLRRES" misc_feature complement(367390..367740) /locus_tag="Deba_0325" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature complement(order(367531..367542,367561..367563, 367648..367650)) /locus_tag="Deba_0325" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(367540..367542,367546..367560, 367630..367632,367639..367641,367645..367647)) /locus_tag="Deba_0325" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(367561..367563,367603..367608, 367615..367620,367642..367644)) /locus_tag="Deba_0325" /note="PHB binding site; other site" /db_xref="CDD:48038" gene 367968..370226 /locus_tag="Deba_0326" /db_xref="GeneID:9492772" CDS 367968..370226 /locus_tag="Deba_0326" /note="COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterProIPR003660:IPR013656:IPR003661:IPR003594:IPR 017232:IPR009082:IPR000014:IPR004358:IPR005467; KEGG: gsu:GSU0812 nitrogen regulation protein NtrY, PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein; SPTR: Q74EZ7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_003806296.1" /db_xref="GI:302341767" /db_xref="GeneID:9492772" /translation="MTTADTEKRHKELARRKRERIIIVVLLLLVACLTYVETRVVVMP DDLPMGSSIMVFALININALLLLLVIFLFFRNMVKLLVERRRGVLGARLRTKLVVAFV LLSLAPTAVVFFAAFQFVGTSMEFWFSDQVEQSLFEAMEVTEGYNQQLASNAAHFAEI MAREIPRDGVNLVEPNARLAKFIGDRQELYGLAAVRVFRPGPRELAYATQSGAHISHF QAFPLELVSRCVAGGEPLTHLQAAPTGDFAAAAWPIRRADKVAGVIVVFRLLPPGALA RIDEVRKGLEDYRQLKAVKNPIRTNLYITLSIVTLLIIFAATWFGFQLAATITVPLGQ VAQGTQRVAGGDYDFSIDAEGPDEIGTLVNAFNRMTADLKTSKARLDEAQEEMRRTNR ELDQRRRYMEIILRNVAAGVIAIDAHGEVTTFNPSAERLLGAQAEEVLGRHWRQVMDG RLVEMLGRMQQGLLPGARGAVDQQVRVNVMGEALTFMVHLSQLRDDQGRDLGVVVVFE DLTELEKAQRMAAWREVARRIAHEVKNPLTPIKLSAQRLVRRYQGRQEEGDTVFDECT RTIIHQVEELRRLVSEFSTFARLPSAKPAPADLRAIAEEALSLFRGGRADIGFELECE GDIPVFELDKEQISRALINLLDNAVAALDNSDGPKQVVVRLSYDDILKYVRLEVEDTG CGVAPEDKIRLFEPYFSTKRGGTGLGLSIVSAITADHGGYIRVQDNQPQGARIIIELP ARGMRPAKAEQA" misc_feature 368190..370199 /locus_tag="Deba_0326" /note="Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]; Region: NtrY; COG5000" /db_xref="CDD:34605" misc_feature 368949..369092 /locus_tag="Deba_0326" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cd06225" /db_xref="CDD:100122" misc_feature order(368949..368954,368961..368966,368970..368975, 368982..368987,368991..368993,369039..369044, 369048..369053,369060..369065,369069..369074, 369081..369086) /locus_tag="Deba_0326" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100122" misc_feature 369198..369497 /locus_tag="Deba_0326" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(369237..369239,369249..369251,369267..369269, 369306..369311,369312..369314,369390..369392, 369408..369410) /locus_tag="Deba_0326" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(369297..369299,369309..369311,369330..369332, 369339..369344,369429..369431,369435..369437) /locus_tag="Deba_0326" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 369522..369731 /locus_tag="Deba_0326" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(369540..369542,369552..369554,369564..369566, 369573..369575,369585..369587,369594..369596, 369660..369662,369672..369674,369681..369683, 369693..369695,369702..369704,369714..369716) /locus_tag="Deba_0326" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 369558..369560 /locus_tag="Deba_0326" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 369876..370184 /locus_tag="Deba_0326" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(369894..369896,369906..369908,369915..369917, 369999..370001,370005..370007,370011..370013, 370017..370022,370083..370094,370140..370142, 370146..370148,370161..370166,370170..370172) /locus_tag="Deba_0326" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 369906..369908 /locus_tag="Deba_0326" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(370011..370013,370017..370019,370083..370085, 370089..370091) /locus_tag="Deba_0326" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 370223..371593 /locus_tag="Deba_0327" /db_xref="GeneID:9492773" CDS 370223..371593 /locus_tag="Deba_0327" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR011006:IPR 009057:IPR003593:IPR020441; KEGG: sat:SYN_02713 response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: Q2LRW3 Response regulator containing sigma 54 interaction domain; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806297.1" /db_xref="GI:302341768" /db_xref="GeneID:9492773" /translation="MSNHILIVDDEKAICQSLQGIFGDEGYRSASAHSGEAALAAAAD DPPDVVFLDIWLPGMDGLETLRRLKQNHPALPVIMISGHATIETAVRATRLGAFDFIE KPLDMDKILLATRNAIEFGRMAAENRLLRDKARGPEITGQSPAIAQIKAAIEKVGPTE SWVLITGENGTGKELVAGAIHRLSARAEGPFVDVNCAAIPEELIESELFGHEKGAFTG AVAAKRGKFDLAHRGSLFLDEIADMSLKTQAKILRILQEQRFERVGGVRTNVVDVRVL AATNKDLTAEIAAGRFREDLYYRLNVIPIHVPPLRQRPEDIPLLAEVFLRQAAARLHC EPKPVDPRAMEILQRQPWPGNVRELKNLVERLMILSSGPNITPEDLPAEMTGQQAAPL GLPAEIFAADYKDARQAFERLYLEHKLEQFNGNISQTAEAVGLERSHLHKKLKALGLR AGKADE" misc_feature 370223..371536 /locus_tag="Deba_0327" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 370238..370576 /locus_tag="Deba_0327" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(370247..370252,370379..370381,370403..370405, 370463..370465,370520..370522,370529..370534) /locus_tag="Deba_0327" /note="active site" /db_xref="CDD:29071" misc_feature 370379..370381 /locus_tag="Deba_0327" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(370388..370393,370397..370405) /locus_tag="Deba_0327" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 370529..370537 /locus_tag="Deba_0327" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 370643..371149 /locus_tag="Deba_0327" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 370721..370744 /locus_tag="Deba_0327" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(370724..370747,370934..370936,371060..371062) /locus_tag="Deba_0327" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 370922..370939 /locus_tag="Deba_0327" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 371117..371119 /locus_tag="Deba_0327" /note="arginine finger; other site" /db_xref="CDD:99707" gene 371590..372408 /locus_tag="Deba_0328" /db_xref="GeneID:9492774" CDS 371590..372408 /locus_tag="Deba_0328" /note="KEGG: hypothetical protein; SPTR: A2QST1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806298.1" /db_xref="GI:302341769" /db_xref="GeneID:9492774" /translation="MTGRRATLAALLALLPLCLAAPATAGQTQTRALGPARPLQAAQK LAVNLQDGPAFVVQTSQADGEAQLAQLAASAGLEEGWAFIPAENLWIEIGGQAGKTGR RTYHLLDDTVYHLMMQYDHLVIYHIHPKNSFAGETDGPFHKLQWTVAEALPSYADMAV MIDLSGFFRQHHQAGRLQWAIVSRHGVTTYGLSQRAAENAETVRLKQFAYRPLDKDDD AEMLQKNGALLRPEEGGPAVDAIIEQCARRLCSDQVWVSFRKVGVEVGGGGEEN" gene 373222..373920 /locus_tag="Deba_0329" /db_xref="GeneID:9492775" CDS 373222..373920 /locus_tag="Deba_0329" /note="COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR016040:IPR006367; KEGG: sfu:Sfum_1588 siroheme synthase; SPTR: A0LIM3 precorrin-2 dehydrogenase; TIGRFAM: siroheme synthase; TIGRFAM: siroheme synthase, N-terminal domain" /codon_start=1 /transl_table=11 /product="siroheme synthase" /protein_id="YP_003806299.1" /db_xref="GI:302341770" /db_xref="GeneID:9492775" /translation="MVLSYYPVLLDVRGREVLVIGGGPVAARKVGGLLAAGAVVRLVA PELCAAAVELALGPGVGYHARGFEASDLDGVVLVFCASGDSAVNARAAELARSRGIFV NVVDAPEAGDMIVPAHFRRGELLVAVATGGASPALSRRLRQRLEVEFGPEWGPLLRLL AAARRAVLAGGGDGADHRRVFYELVDSRLAEFLRAGDWAGVDGLLREALGLGLADLGL GPDDLQPRPEDGRP" misc_feature 373228..373815 /locus_tag="Deba_0329" /note="Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]; Region: CysG; COG1648" /db_xref="CDD:31834" misc_feature 373237..373656 /locus_tag="Deba_0329" /note="precorrin-2 dehydrogenase; Validated; Region: PRK06719" /db_xref="CDD:180668" gene 373917..374762 /locus_tag="Deba_0330" /db_xref="GeneID:9492776" CDS 373917..374762 /locus_tag="Deba_0330" /note="COGs: COG4137 ABC-type uncharacterized transport system permease component; InterPro IPR002541; KEGG: pca:Pcar_3065 cycothcome C biogenesis protein; PFAM: cycothcome C assembly protein; SPTR: Q3A007 cycothcome C biogenesis protein; PFAM: cytochrome C assembly protein" /codon_start=1 /transl_table=11 /product="cycothcome C assembly protein" /protein_id="YP_003806300.1" /db_xref="GI:302341771" /db_xref="GeneID:9492776" /translation="MNDFLHWATVAAYLAGTALYLAFVAAQRDGLRRVGGAVLWLGLG LHTAGLATAWWELGVVPALNLGQSLALLSWALMAATLVANLRLEIMVMGALSGPICTM LLLAGNWLPAPVGQPGPVFKSVWLGVHVFGLLGGYGLLLLACLAGLLYMRQERALRSK RLGPLFQRLPSLSRLDQFGHWTMVSGFTLMTVGLVGGAIFAHGVMGSFLRGTPKEVCA LVTWLAYAAVIHTRLVQGWRGRRGAWLMVAAFGLVLFTFVGAGLLFNDYHSFESIIKF TGAVS" misc_feature 374079..374726 /locus_tag="Deba_0330" /note="Cytochrome C assembly protein; Region: Cytochrom_C_asm; cl00504" /db_xref="CDD:186041" gene 374759..376036 /locus_tag="Deba_0331" /db_xref="GeneID:9492777" CDS 374759..376036 /locus_tag="Deba_0331" /note="COGs: COG0373 Glutamyl-tRNA reductase; InterProIPR015895:IPR006151:IPR015896:IPR000343:IPR 016040:IPR018214; KEGG: dal:Dalk_3439 glutamyl-tRNA reductase; PFAM: shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; SPTR: B8FLI1 Glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA reductase" /protein_id="YP_003806301.1" /db_xref="GI:302341772" /db_xref="GeneID:9492777" /translation="MNLLLVGVNHKTAPVELRECLAPAADGAERILRRVLDIGEVDEA FLVSTCNRVELLTAGDGPQPAEAVKAALTDGRRAEAQRLERAFYVHHDDEAVRHLFRV ASSLDSLVVGEPQILGQIKESFRLACESGACRAVLNRLLHTTFRVAKRVRSETNIGGA AVSVPFAAVQLAKKIFDDLAGLRALLVGAGEMAELAAEHLLAGGVAELTVANRTYERA LALAGRLRGRACAMDELAQALSQSDIVVTSTGAVEPVISQAMAKAALKKRRHRPVFFI DIAVPRDVDPKVAELEGCFVYDIDDLTQVVEQNRASRQEEAAQAELIVAEEVGKFREW LDALAVVPTIAALSAKAEAIRRAEVEFTLRGGAIQGEEQAEAIDRLTRSLVKKLLHDP ILFLKEQGHASAETRRDQLALVKRLFGLGPEEG" misc_feature 374759..376030 /locus_tag="Deba_0331" /note="glutamyl-tRNA reductase; Reviewed; Region: hemA; PRK00045" /db_xref="CDD:178819" misc_feature 374765..375676 /locus_tag="Deba_0331" /note="NADP-binding domain of glutamyl-tRNA reductase; Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213" /db_xref="CDD:133452" misc_feature order(374813..374815,374903..374905,375101..375103, 375110..375112,375122..375124,375131..375133, 375143..375145) /locus_tag="Deba_0331" /note="tRNA; other site" /db_xref="CDD:133452" misc_feature order(374903..374908,374912..374914,375080..375082, 375095..375097,375101..375103,375113..375115) /locus_tag="Deba_0331" /note="putative tRNA binding site [nucleotide binding]; other site" /db_xref="CDD:133452" misc_feature order(375320..375322,375326..375328,375335..375337) /locus_tag="Deba_0331" /note="putative NADP binding site [chemical binding]; other site" /db_xref="CDD:133452" misc_feature 375725..376018 /locus_tag="Deba_0331" /note="Glutamyl-tRNAGlu reductase, dimerisation domain; Region: GlutR_dimer; pfam00745" /db_xref="CDD:189697" gene complement(376049..376279) /locus_tag="Deba_0332" /db_xref="GeneID:9492778" CDS complement(376049..376279) /locus_tag="Deba_0332" /note="KEGG: dol:Dole_0798 hypothetical protein; SPTR: A8ZVE7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806302.1" /db_xref="GI:302341773" /db_xref="GeneID:9492778" /translation="MKRSNLRDMLIYMAFPMRVAMTFAGSVLLFFFVGRRLDDWLGAK GLVLALMVLLGIGAGGYAVYRQIINIDRPDKH" misc_feature complement(376079..376240) /locus_tag="Deba_0332" /note="Putative F0F1-ATPase subunit (ATPase_gene1); Region: ATPase_gene1; cl09754" /db_xref="CDD:195904" gene 376496..376708 /locus_tag="Deba_0333" /db_xref="GeneID:9492779" CDS 376496..376708 /locus_tag="Deba_0333" /note="InterPro IPR009923; KEGG: jan:Jann_3624 hypothetical protein; PFAM: protein of unknown function DUF1458; SPTR: A4EEU5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1458)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806303.1" /db_xref="GI:302341774" /db_xref="GeneID:9492779" /translation="MSEKRVARVTDIIAASPISFDDAIKVGFERAARTLRDITGMKVL EQRVAVEDNQIQEYRVRLEVIFLLES" misc_feature 376508..376702 /locus_tag="Deba_0333" /note="Protein of unknown function (DUF1458); Region: DUF1458; cl01328" /db_xref="CDD:154336" gene 376773..377615 /locus_tag="Deba_0334" /db_xref="GeneID:9492780" CDS 376773..377615 /locus_tag="Deba_0334" /note="COGs: COG2264 ribosomal protein L11 methylase; InterPro IPR007848; KEGG: dal:Dalk_1101 ribosomal L11 methyltransferase; PFAM: methyltransferase small; SPTR: B8F958 ribosomal L11 methyltransferase; PFAM: ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase" /codon_start=1 /transl_table=11 /product="methyltransferase small" /protein_id="YP_003806304.1" /db_xref="GI:302341775" /db_xref="GeneID:9492780" /translation="MARFFVDAAVSKAPYDQLFIYEVAGDARPAIGAPPAGYLGLWLE ADSSFVFFDRPADEAMARILTAGPGLKLLDRHQLSYEQWQGGQALTPIVVDDLHIVPA WLDYDPPAGARLVRLDPGLVFGSGLHPTTAHCLELLHLRRQRGPLGRVLDLGCGTGIL GLAAAAWGAQGVTAVDLNPLCVETTQANARRNGLALTAVEGPAQDFIHLPAQVVLSNL HWQVQELILADEAKLAHGPELILSGIMRGFAGPLEDRLGRLGYRVLQRREADFTWFTF WAAR" misc_feature <377019..377576 /locus_tag="Deba_0334" /note="ribosomal protein L11 methyltransferase; Reviewed; Region: prmA; PRK00517" /db_xref="CDD:179053" gene 378015..379700 /locus_tag="Deba_0335" /db_xref="GeneID:9492781" CDS 378015..379700 /locus_tag="Deba_0335" /EC_number="4.2.1.9" /note="COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581:IPR004404:IPR020558; KEGG: mja:MJ1276 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: C5U5V1 Dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase" /codon_start=1 /transl_table=11 /product="dihydroxy-acid dehydratase" /protein_id="YP_003806305.1" /db_xref="GI:302341776" /db_xref="GeneID:9492781" /translation="MRSDKVRLGVHRAPQRSLLRAMGHDDETMVKPLIGIANSYSQVV PGHIHLNDLALAVAEGVRQAGGQPMEFNTMAICDGLVMGHDGMHASLPSREIVADSVE LMAQAHCFDGLVLLASCDKIVPGMLMAAARLDIPVVAVTGGPMAAGRLDGKRVDLITV FEGVAKVASGQMTPDDLARLERLACPGPGSCAGMFTANTMACITEALGLSLPGCACAL AAGPEKRRIARDSGLKIVELASRDLRPSAILTPAAFENACRVDLALGGSTNTALHLPA IAHAAGVSFGLADFDRLARQTPHLCSMSPGGPMHMENLGAAGGVGGVLRALAPLIDAS CLAVGGSIADYMTERQPDLVVDGQLVIHPLSAPVHDQGGIAVLRGNLAPDGAVVKQTA VAPEMMRHQGPAQVFDSEDAAVAAYDQGRIRPGGVLVVRYEGPAGGPGMREMLALTAL ISGGPLSGKVALITDGRFSGGSRGAAIGHVSPEAAQGGLIGLVADGDMIEIDIPGRRL ELAVAAEELERRRQAWRRPAAKFARGPLARYAALVGSAAGGAVLRDDFSQGSR" misc_feature 378015..379631 /locus_tag="Deba_0335" /note="Dehydratase family; Region: ILVD_EDD; cl00340" /db_xref="CDD:185921" misc_feature 378075..379631 /locus_tag="Deba_0335" /note="dihydroxy-acid dehydratase; Region: ilvD; TIGR00110" /db_xref="CDD:161713" gene 379702..381450 /locus_tag="Deba_0336" /db_xref="GeneID:9492782" CDS 379702..381450 /locus_tag="Deba_0336" /EC_number="2.2.1.6" /note="COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterProIPR012001:IPR012000:IPR011766:IPR012846:IPR 000399; KEGG: mtp:Mthe_0110 acetolactate synthase 3 catalytic subunit; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: A0B5D8 Acetolactate synthase; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type" /codon_start=1 /transl_table=11 /product="acetolactate synthase, large subunit, biosynthetic type" /protein_id="YP_003806306.1" /db_xref="GI:302341777" /db_xref="GeneID:9492782" /translation="MSSAAKAKNKPQAGTYNGADAVVDALRAQGVELIFGMVGGQIMP VYDALHRHHCFGHVLVGHEQGAAHMAEGYARATGKPGVIMTTSGPGATNLVTGLADAF MDSTPVVAITGQVASTLLGNDAFQEADMRGITMPITKHNYQVQNADDLPEIFAEAFYV ALSGRPGPVLIDLPRDVAVSPCQPRQATPMPPTGYKPPFKPHPLQVERALSLMAQAQR PVIIAGGGVIHAGAHESLRKLAELTGFPVSTTLMGLGGLPADHPLSLGMPGMHGTGYA NLAIYNADLLLVVGCRLDDRVTGNVAKFSPGSKVIHVDVDASEIGKNLECQVPIVGDA GQALAQLLAGAQAWPERPDTTAWRKQIDQWKKKYPMVYPKSDDVIAPQWAIQEVGKLL APEDIVVTGVGQHQMFVAQYYPFRRPRTMISSGGLGTMGFGLPAAIGAQMGAPERQVV CFDGDGSFLMNIQELATAVRYRVPLVAVVLNNAWLGMVAQWQRMFYDRRMSQSETAAP PYDKVAQAFGALGKRVERPEEFVPAMQWALREAKAQKLPVVLDVMIEREAKVLPMVPP GGANAEFIPCQSGDCQ" misc_feature 379753..381423 /locus_tag="Deba_0336" /note="acetolactate synthase, large subunit, biosynthetic type; Region: acolac_lg; TIGR00118" /db_xref="CDD:161717" misc_feature 379759..380226 /locus_tag="Deba_0336" /note="Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035" /db_xref="CDD:132918" misc_feature order(379798..379800,379813..379818,379828..379830, 379840..379842,379867..379887,379894..379896, 379903..379908,379915..379920,379924..379932, 379966..379968,379987..379989,379999..380001, 380008..380013) /locus_tag="Deba_0336" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature order(379813..379821,379828..379830,379840..379842, 379870..379872,379876..379887,379891..379893, 379966..379968,379975..379980,379984..379989, 379996..379998,380098..380100,380107..380109) /locus_tag="Deba_0336" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature order(379813..379815,379888..379890,379966..379968, 379978..379980) /locus_tag="Deba_0336" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132918" misc_feature 380317..380700 /locus_tag="Deba_0336" /note="Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205" /db_xref="CDD:189448" misc_feature 380836..381402 /locus_tag="Deba_0336" /note="Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015" /db_xref="CDD:48178" misc_feature order(380905..380916,380983..380985,380989..380991, 381064..381072,381079..381081,381145..381147) /locus_tag="Deba_0336" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48178" misc_feature order(380974..380976,380983..380985,380989..380991, 381076..381081,381085..381090,381109..381111, 381226..381228,381238..381240,381247..381249) /locus_tag="Deba_0336" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48178" gene 381447..382025 /locus_tag="Deba_0337" /db_xref="GeneID:9492783" CDS 381447..382025 /locus_tag="Deba_0337" /note="COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR002912:IPR019455:IPR004789; KEGG: pth:PTH_0528 acetolactate synthase 3 regulatory subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; SPTR: A5D4Z3 Acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit; PFAM: Small subunit of acetolactate synthase; ACT domain; TIGRFAM: acetolactate synthase, small subunit" /codon_start=1 /transl_table=11 /product="acetolactate synthase, small subunit" /protein_id="YP_003806307.1" /db_xref="GI:302341778" /db_xref="GeneID:9492783" /translation="MSEEYCPISVLVRNEPGVLARVAGLFARRGFNINSLAVGETEDP QVSRITVVVKGDPHTVDQAVKQLRRLVSVIKVRDQSTMPRVERGLALIKVRATPAQRG EIMQLAGVFRANVDHVDGHCMVIEVSGNRNKIEAMIDMLKPYGIMELARTGQIVLARV RSIHQGMEGAGSAYVPDPDEDPQATYNVYQQS" misc_feature 381468..381923 /locus_tag="Deba_0337" /note="acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895" /db_xref="CDD:183365" misc_feature 381468..381677 /locus_tag="Deba_0337" /note="N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878" /db_xref="CDD:153150" misc_feature order(381480..381482,381486..381488,381501..381503, 381540..381545,381558..381560,381585..381587) /locus_tag="Deba_0337" /note="putative valine binding site [chemical binding]; other site" /db_xref="CDD:153150" misc_feature order(381492..381497,381504..381506,381525..381527, 381534..381536,381546..381560,381588..381590) /locus_tag="Deba_0337" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153150" misc_feature 381702..381923 /locus_tag="Deba_0337" /note="Small subunit of acetolactate synthase; Region: ALS_ss_C; pfam10369" /db_xref="CDD:150959" gene 382035..383024 /locus_tag="Deba_0338" /db_xref="GeneID:9492784" CDS 382035..383024 /locus_tag="Deba_0338" /EC_number="1.1.1.86" /note="COGs: COG0059 Ketol-acid reductoisomerase; InterProIPR013116:IPR000506:IPR008927:IPR016040:IPR 013023; KEGG: gme:Gmet_1262 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase; PRIAM: Ketol-acid reductoisomerase; SPTR: Q39W76 Ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase" /codon_start=1 /transl_table=11 /product="ketol-acid reductoisomerase" /protein_id="YP_003806308.1" /db_xref="GI:302341779" /db_xref="GeneID:9492784" /translation="MSVTIYYQKDCDMGLLKGKKICVLGYGSQGRAHANNLHDSGLDV TVALREGSATFQRVQDDGLKAAPVAQAVAQADLVCFLLPDQVQADVYNAVVAPNLKKG AAILFAHGFNIHYGQIVPPADVDVLMVAPKGPGKLVRDLYVAGQGVPCLIAIHQDASG KAKDLGLAYAAGIGGARAGVIETSFKEETETDLFGEQAVLCGGLTALMKAGFETLVDA GYAPEMAYFECINEMKLIVDLIYQGGMTNMRRFISDTAKFGDVTRGPRVIDDYVRQNM EEILTEIQNGEFAREWILENKANRPVFNALLRADEAHEMEEVGARLRSMMNWL" misc_feature 382041..383021 /locus_tag="Deba_0338" /note="ketol-acid reductoisomerase; Provisional; Region: PRK05479" /db_xref="CDD:180113" misc_feature 382077..382529 /locus_tag="Deba_0338" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 382587..383021 /locus_tag="Deba_0338" /note="Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450" /db_xref="CDD:110451" gene 383204..384598 /locus_tag="Deba_0339" /db_xref="GeneID:9492785" CDS 383204..384598 /locus_tag="Deba_0339" /EC_number="4.2.1.33" /note="COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterProIPR001030:IPR015931:IPR015932:IPR004430:IPR 018136; KEGG: sth:STH2116 isopropylmalate isomerase large subunit; PFAM: aconitate hydratase domain protein; SPTR: Q67MJ2 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase, large subunit" /protein_id="YP_003806309.1" /db_xref="GI:302341780" /db_xref="GeneID:9492785" /translation="MPSLIDKIWDAHVVLREPGRPALLYVDRHLVHEVTSPQAFQGLR LAGRRVRRPDLTFAVCDHVVPTDSRQRPLADQVAETQLAALEQNAAQFGVTFFGMEDP RQGVIHVVMAEQGVILPGATVFCGDSHTATHGAFGALAFGVGTSEVEHILATQTLAQA KPKSMAVRFVGQLPAGLSAKDMALAFIGQVGAAGGTGHLVEYMGPAVEALSMEGRMTL CNMSVECGAKAGLVAPDQTTFDYLQGRPFAPKGADWDEAVACWRALKSDADAVFDAEV VVDLSGLEPQVTWGINPGQATGLSGRVPDPAAMADPEQQRAAIKALAYMGLEPGQKIA DLAVDYVFIGSCTNGRIQDLRAAAAVVKGRKVAPGVTALVVPGSGLVRAQAEAEGLDR VFIEAGFQWRLAGCSMCLAMNPDVLPSGKRCASTSNRNFEDRQGRGGRTHLCSPATAA ASAIAGRLADARTL" misc_feature 383204..384541 /locus_tag="Deba_0339" /note="3-isopropylmalate dehydratase large subunit; Reviewed; Region: PRK00402" /db_xref="CDD:179006" misc_feature 383285..384541 /locus_tag="Deba_0339" /note="3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; Region: IPMI; cd01583" /db_xref="CDD:153133" misc_feature order(383297..383299,383306..383308,383582..383587, 384431..384433,384488..384490,384503..384505) /locus_tag="Deba_0339" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153133" misc_feature order(383588..383590,384239..384241,384419..384421, 384428..384433,384485..384487) /locus_tag="Deba_0339" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153133" gene 384657..384932 /locus_tag="Deba_0340" /db_xref="GeneID:9492786" CDS 384657..384932 /locus_tag="Deba_0340" /note="KEGG: bra:BRADO0955 thioesterase/thiol ester dehydrase-isomerase; SPTR: A4YLU5 Putative thioesterase/thiol ester dehydrase-isomerase; PFAM: thioesterase superfamily" /codon_start=1 /transl_table=11 /product="thioesterase/thiol ester dehydrase-isomerase" /protein_id="YP_003806310.1" /db_xref="GI:302341781" /db_xref="GeneID:9492786" /translation="MTHAQLIDLAMTRIGQALTAALAPGASAVLSHVAADFFGPPDGL ERPEVTVDVQKAGRTMAFAGAFVWRDGQRLARVSAVYRVRPAAEPTT" gene 384977..385600 /locus_tag="Deba_0341" /db_xref="GeneID:9492787" CDS 384977..385600 /locus_tag="Deba_0341" /note="COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573:IPR015928:IPR004431; KEGG: pau:PA14_23760 isopropylmalate isomerase small subunit; PFAM: aconitate hydratase domain protein; SPTR: Q02PT3 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase, small subunit" /protein_id="YP_003806311.1" /db_xref="GI:302341782" /db_xref="GeneID:9492787" /translation="MEKFETFTGVVAPLDVANVDTDQIIPKQFLKLVDRAGFGQYAFY NWRFKPDGQPDEGFVLNQPRYQRARILLARDNFGCGSSREHAPWALAQYGQGLGVVIA PSFADIFTNNAFNNGMLLISLPAATIDELFGRVRAHEGYALTVDLAAQRLSGPDGFAC SFEIDPFRKERLLEGLDHIGLTLRHEAAIAAYEQGRQKPWQAAVAKS" misc_feature 385016..385417 /locus_tag="Deba_0341" /note="Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-...; Region: IPMI_Swivel; cd01577" /db_xref="CDD:73275" misc_feature 385217..385225 /locus_tag="Deba_0341" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73275" gene 385627..386619 /locus_tag="Deba_0342" /db_xref="GeneID:9492788" CDS 385627..386619 /locus_tag="Deba_0342" /EC_number="1.1.1.85" /note="COGs: COG0473 isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR019818; KEGG: afu:AF0628 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: O29627 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isopropylmalate/isohomocitrate dehydrogenases" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="YP_003806312.1" /db_xref="GI:302341783" /db_xref="GeneID:9492788" /translation="MTENIYDIAVIGGDGIGPEVVEAEIAVLEATGLAWNFSSYEAGD DCLASRGQALPQATLDGALAAQAVIFGAAGVSAADVILRLRAELGTFVNLRPSVAYKG VNCLHPQTDMMIVRENTECLYAGIEAQLTPEVVTATRVITSQASTRIVNYALEWARQA GGKKVTAVHKANVLRKTDGHFLQCCRAAARQFPDVPYEEALVDSVAMRMAMRPEEFQV IVTTNLFGDILSDLAAGLIGGLGMCPSANLGQAHALFEPVHGTAPDIAGQGKANPSAA ILCGAMLLRHLGQEQWAARVEKAVADCVADGQATSDLGGKLRTMEMARAVIDRL" misc_feature 385639..386616 /locus_tag="Deba_0342" /note="Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445" /db_xref="CDD:193821" misc_feature 385648..386610 /locus_tag="Deba_0342" /note="isocitrate dehydrogenase; Validated; Region: PRK06451" /db_xref="CDD:180566" gene 386633..387415 /locus_tag="Deba_0343" /db_xref="GeneID:9492789" CDS 386633..387415 /locus_tag="Deba_0343" /EC_number="4.1.1.5" /note="COGs: COG3527 Alpha-acetolactate decarboxylase; InterPro IPR005128; KEGG: pth:PTH_2358 alpha-acetolactate decarboxylase; PFAM: alpha-acetolactate decarboxylase; PRIAM: Acetolactate decarboxylase; SPTR: Q1JWS4 Acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase; PFAM: Alpha-acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase" /codon_start=1 /transl_table=11 /product="alpha-acetolactate decarboxylase" /protein_id="YP_003806313.1" /db_xref="GI:302341784" /db_xref="GeneID:9492789" /translation="MKNFPRLCALATLILLLAAAGARAQEQTLYQYSTLDALLEGVYD GQLTMAELLGHGDLGLGTFNGLDGEMVVIDGKAYQAPFSGKVELMPASARTPFAQVTA FAPEKAFEVKGPMDMAGLQAAIDKAIESPNLFYAIRVSGGFKHVTARSVPRQTRPYPR LVEVVKKQAVFQFDDVQGDIVGFLSPAYVKGLGAPGYHLHFLRADRQAGGHLLAVEIE NATVQIDAIPGLRVQLPTSGDFLNVGLGDDKSADLHEVETKK" misc_feature 386717..387376 /locus_tag="Deba_0343" /note="Alpha-acetolactate decarboxylase; Region: AAL_decarboxy; cl01408" /db_xref="CDD:163978" gene 387454..389343 /locus_tag="Deba_0344" /db_xref="GeneID:9492790" CDS 387454..389343 /locus_tag="Deba_0344" /EC_number="2.4.1.18" /note="COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR004193:IPR006047:IPR006048:IPR017853:IPR 014756:IPR006589:IPR013783:IPR013781:IPR013780:IPR006407; KEGG: tro:trd_1933 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: B9L233 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase" /codon_start=1 /transl_table=11 /product="1,4-alpha-glucan branching enzyme" /protein_id="YP_003806314.1" /db_xref="GI:302341785" /db_xref="GeneID:9492790" /translation="MTRGLLTEFDLHLFNEGSHSRLHAKMGAHPVADGCHFAVWAPNA RSVHVIGDFNDWDKSAVAMELRGDSGIWEAFVKDARVGQRYKYHIRSRFKGYKVDKAD PFGFYHEQSPATGSVIWPRAYEWGDAAWLKRRAKANAHREPMSIYELHLGSWRLKPEE GNRWLTYRELAPLLVDYCREMAYTHVEFMPVMEHPFGGSWGYQITGYFAPTSRYGSPQ DFMYLVDTLHQAGIGVVLDWAPSHFPADEHGLKFFDGSHLFEHADPRQGHHPDWDSAI FNYGRNEVRSFLLSSAFFWLEFMHADALRVDAVASMIHLDYSRQPGQWIPNQYGGNEN LEAISFLRRLNEDAYREIPGVQIIAEESTAWPMVSRPVYLGGLGFGFKWDMGWMNDVL KYMALDPVHRRYHQNDITFRSMYQYAENFVLPLSHDEVVHEKSTLIGKMPGDEWQKFA NLRLLHGCMFAQPGKKLLFMGGELAQWREWDYETSLDWHLLQYPPHQGVQRWVADLNR FYAAEPAMHRLDCEPGGFQWVDCADADQSVLTFLRLDGQGRQVLAVFNFTPVPRHGYN IGVDVGGPWVEALNSDASQYGGSGLVNGPLVEAWPGQVHGRPYHLSLTLSPLALMLLR PAGQQ" misc_feature 387466..389283 /locus_tag="Deba_0344" /note="glycogen branching enzyme; Provisional; Region: PRK05402" /db_xref="CDD:180057" misc_feature 387502..387810 /locus_tag="Deba_0344" /note="Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a...; Region: Glycogen_branching_enzyme_N_term; cd02855" /db_xref="CDD:30342" misc_feature 387979..>388179 /locus_tag="Deba_0344" /note="Alpha amylase, catalytic domain; Region: Alpha-amylase; cl07893" /db_xref="CDD:164103" misc_feature 389050..389268 /locus_tag="Deba_0344" /note="Alpha amylase, C-terminal all-beta domain; Region: Alpha-amylase_C; cl02706" /db_xref="CDD:194419" gene complement(389353..390717) /locus_tag="Deba_0345" /db_xref="GeneID:9492791" CDS complement(389353..390717) /locus_tag="Deba_0345" /EC_number="6.1.1.22" /note="COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterProIPR004365:IPR004364:IPR016027:IPR012340:IPR 002312:IPR004522:IPR006195; KEGG: dvu:DVU0007 asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: C5TZ48 Asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="asparaginyl-tRNA synthetase" /protein_id="YP_003806315.1" /db_xref="GI:302341786" /db_xref="GeneID:9492791" /translation="MDRTRVRRALAATEALGLVLIRGWARTRRESKGLVFLEINDGSC LGNLQVLVAEDSAAWGGLGEVSTGAALEVVGRHQASPAKGQAWELHAEGLRVLGVADP ESYPLQKKRHGDEFLRTIAHLRPRTNKYGAMFRIRARAALAVHEFFGQRGFCWVHTPI ITGSDCEGAGEMFRVTTLPPGEVDLAADFFGRQAGLTVSGQLEAEPFALALGDVYTFG PTFRAENSNTPRHAAEFWMIEPEMAFADLADDMALAEDFTKDLTRRVLADCGEDLALF ERFVQPGLLAGLAAMVEGPFERVSYGQAIDILAKAGRQWEYAPQWGADLQTEHERFLC EEYFRRPVIVFDYPKQIKPFYMRQNDDGRTVAAMDLLVPRVGELIGGSQREERLGVLE ARMGELGLSAEDYWWYLDTRRFGSAPHAGFGMGFERFLLMITGAGNIRDVIAYPRTPR HLGF" misc_feature complement(389356..390717) /locus_tag="Deba_0345" /note="asparaginyl-tRNA synthetase; Validated; Region: asnC; PRK03932" /db_xref="CDD:179678" misc_feature complement(390424..390663) /locus_tag="Deba_0345" /note="EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (...; Region: EcAsnRS_like_N; cd04318" /db_xref="CDD:58588" misc_feature complement(order(390424..390426,390508..390510, 390592..390594,390646..390648)) /locus_tag="Deba_0345" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:58588" misc_feature complement(order(390454..390456,390478..390480, 390520..390522,390565..390567,390571..390573, 390610..390612,390628..390633,390637..390639)) /locus_tag="Deba_0345" /note="putative anticodon binding site; other site" /db_xref="CDD:58588" misc_feature complement(389368..390387) /locus_tag="Deba_0345" /note="Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well...; Region: AsxRS_core; cd00776" /db_xref="CDD:29821" misc_feature complement(order(389371..389379,389470..389481, 389488..389490,389968..389970,389986..389991, 390016..390021,390082..390093,390100..390102, 390109..390111,390145..390153,390193..390198, 390229..390231,390235..390243,390247..390249, 390253..390255,390262..390264,390283..390285, 390295..390297,390304..390309,390325..390327, 390340..390342,390352..390354,390358..390360)) /locus_tag="Deba_0345" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29821" misc_feature complement(390229..390243) /locus_tag="Deba_0345" /note="motif 1; other site" /db_xref="CDD:29821" misc_feature complement(390046..390057) /locus_tag="Deba_0345" /note="motif 2; other site" /db_xref="CDD:29821" misc_feature complement(order(389434..389436,389443..389445, 389578..389580,389587..389589,390025..390030, 390046..390048,390052..390054)) /locus_tag="Deba_0345" /note="active site" /db_xref="CDD:29821" misc_feature complement(389434..389445) /locus_tag="Deba_0345" /note="motif 3; other site" /db_xref="CDD:29821" gene complement(391666..392730) /locus_tag="Deba_0346" /db_xref="GeneID:9492792" CDS complement(391666..392730) /locus_tag="Deba_0346" /note="COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: rce:RC1_1008 chemotaxis MotB protein; PFAM: OmpA/MotB domain protein; SPTR: A6EY60 flagellar motor protein; PFAM: OmpA family" /codon_start=1 /transl_table=11 /product="OmpA/MotB domain protein" /protein_id="YP_003806316.1" /db_xref="GI:302341787" /db_xref="GeneID:9492792" /translation="MSADGIALDLMPLAGPPRPEPEAAPATEPQATDAEPRANANAAD SDTIVRRRLRPLARFAQGEESPSFYLSLSDLMCLLLVFFVLIYSLSGHEKPTDQPGPA QQAAVEIAEPAEPAQIASAPAAPGLPNAQAAPDDLSRAALALASAGQSDPALADQPAP QPTPEPQPVDRGVTLDRALLTMVSASTATPADAVATEENSLDSLLDQLRAAAGEGMPG AAGQPAEGLQITSAEGRLVIRLPENITFDLGQALLKPVMAETLGRLAPVVLRNPQCQV IVTGHTDDLPISTAQFASNWELSAARAAAVARALTAHGVPAGRLHIRGMADQSPLLPN DSPENRQQNRRVEIELRAIG" misc_feature complement(391681..392004) /locus_tag="Deba_0346" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature complement(order(391699..391701,391711..391713, 391837..391839,391846..391851,391861..391863, 391882..391887,391984..391989)) /locus_tag="Deba_0346" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene complement(392720..393559) /locus_tag="Deba_0347" /db_xref="GeneID:9492793" CDS complement(392720..393559) /locus_tag="Deba_0347" /note="COGs: COG1291 flagellar motor component; InterPro IPR002898:IPR000540; KEGG: amt:Amet_2714 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: A6TRP8 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family" /codon_start=1 /transl_table=11 /product="MotA/TolQ/ExbB proton channel" /protein_id="YP_003806317.1" /db_xref="GI:302341788" /db_xref="GeneID:9492793" /translation="MSRKNYLIMAAVAVALLVAFWASGSLLMFFNPLGLLLVLGGTLS AAWVAFPRTTLLGLWEQMSGLRQAKVLSARQLVELFYQLGRLRRFRGVRHMEELAEGN DNQFLRMAVAMVADERPAADIAQRLEQEMDFFLARRESQRAVLSFMGRLAPAFGLAGT MIGLIRMLHTLSDPTAVASGMSVALLTTFYGLMIANLVVLPLERKLKEHNRAEAVEMA LITEGAVALAQETNASAVAARLASFRYAEEAQAAGPRLNIKGALESLRAVAAGLRKVS DER" misc_feature complement(392864..>393250) /locus_tag="Deba_0347" /note="MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568" /db_xref="CDD:186086" gene 393837..394472 /locus_tag="Deba_0348" /db_xref="GeneID:9492794" CDS 393837..394472 /locus_tag="Deba_0348" /note="COGs: COG2945 hydrolase of the alpha/beta superfamily; KEGG: dol:Dole_3190 alpha/beta hydrolase family protein; SPTR: A9A074 Alpha/beta hydrolase family protein; PFAM: X-Pro dipeptidyl-peptidase (S15 family)" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase family protein" /protein_id="YP_003806318.1" /db_xref="GI:302341789" /db_xref="GeneID:9492794" /translation="MSELKVTIAVDEAVSLEAAYSPLEGARGAAVVLHPHPNYGGSMD NNVVWALTRGALAAGWSALRFNFRGVGRSTGRHGGGAAEAEDVLAVAGWLAQRQKGPL ALMGYSFGSLIGSLAATRLTGLACGLWASPPLVLGELAPWPVQAGPLLIMVGSADEFT DVGRLEAYCRQTGARCRLEVSKGGDHFWWGGESVLTQASRGLLLSASGPAV" misc_feature 393879..394406 /locus_tag="Deba_0348" /note="Predicted hydrolase of the alpha/beta superfamily [General function prediction only]; Region: COG2945" /db_xref="CDD:32768" gene 394831..395970 /locus_tag="Deba_0349" /db_xref="GeneID:9492795" CDS 394831..395970 /locus_tag="Deba_0349" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013767:IPR003661:IPR003594:IPR009082:IPR 000014:IPR004358:IPR005467; KEGG: sfu:Sfum_2495 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: A0LL72 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor signal transduction histidine kinase" /protein_id="YP_003806319.1" /db_xref="GI:302341790" /db_xref="GeneID:9492795" /translation="MEDRPQVIDECVAQLREVVQELEKFRQIVDTAQDAVVTVNQSQE VVFMNRAAEKMFGYAREELLGRDMAPLIPAQFRRSHHSYIERLARTGRQKTMGHPMQL QAERRDGGVLPIHLTFSVAEVDGQYLFTAIMRDLSEKQGLTEKIKRSETLAVVGQMVA TVGHEIRQPLTSIGGFARQLTKETGISEPGKRKLQIIIDEVARLEHMLNELNDLSRPT EYRWQEASLADILGGVLASLAPDLAGAHIQLVIDDNLPPVLADPDRIGQVLRNIIINA IQASGPEPRLEIGLDQSSDGGARLRVRDHGAGLGVNAAGQVFKPFYTTKKGGTGLGLP VARRIVGDHDGKLTLAPAQGGGAVATLKLPPAHGRRPGQAGPDEA" misc_feature 394906..395922 /locus_tag="Deba_0349" /note="Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852" /db_xref="CDD:33642" misc_feature 394930..395208 /locus_tag="Deba_0349" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(394972..394974,394984..394986,395002..395004, 395041..395052,395128..395130,395155..395157) /locus_tag="Deba_0349" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(395032..395034,395044..395046,395068..395070, 395077..395082,395176..395178,395182..395184) /locus_tag="Deba_0349" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 395284..395478 /locus_tag="Deba_0349" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(395302..395304,395314..395316,395326..395328, 395335..395337,395347..395349,395356..395358, 395407..395409,395419..395421,395428..395430, 395440..395442,395449..395451,395461..395463) /locus_tag="Deba_0349" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 395320..395322 /locus_tag="Deba_0349" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 395623..395919 /locus_tag="Deba_0349" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(395641..395643,395653..395655,395662..395664, 395734..395736,395740..395742,395746..395748, 395752..395757,395818..395829,395875..395877, 395881..395883,395896..395901,395905..395907) /locus_tag="Deba_0349" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 395653..395655 /locus_tag="Deba_0349" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(395746..395748,395752..395754,395818..395820, 395824..395826) /locus_tag="Deba_0349" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 396037..396549 /locus_tag="Deba_0350" /db_xref="GeneID:9492796" CDS 396037..396549 /locus_tag="Deba_0350" /EC_number="3.5.1.88" /note="COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: sfu:Sfum_0147 peptide deformylase; PFAM: formylmethionine deformylase; SPTR: A8TUC7 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: polypeptide deformylase; TIGRFAM: peptide deformylase" /codon_start=1 /transl_table=11 /product="peptide deformylase" /protein_id="YP_003806320.1" /db_xref="GI:302341791" /db_xref="GeneID:9492796" /translation="MAILPICKYPDPVLAEKCAEIDRVDDELRRLAQDMIDTMYDAPG VGLAAPQVGRAIRMVVVDTAEDDKRGTPMVLINPRVVAKRGQLVWDEACLSVPDYRAD VVRASEVVVEAGDLEGNDLRIEAEGLTAVCLQHEIDHLDGVLFLDHISSLKRAMYRKR RLKQLRRDGQ" misc_feature 396052..396471 /locus_tag="Deba_0350" /note="Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(...; Region: Pep_deformylase; cd00487" /db_xref="CDD:29602" misc_feature order(396166..396174,396187..396189,396310..396318, 396439..396444,396451..396453) /locus_tag="Deba_0350" /note="active site" /db_xref="CDD:29602" misc_feature order(396172..396174,396187..396189,396316..396318, 396442..396444) /locus_tag="Deba_0350" /note="catalytic residues [active]" /db_xref="CDD:29602" misc_feature order(396313..396315,396439..396441,396451..396453) /locus_tag="Deba_0350" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29602" gene 396546..397502 /locus_tag="Deba_0351" /db_xref="GeneID:9492797" CDS 396546..397502 /locus_tag="Deba_0351" /note="COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR005793:IPR011034:IPR005794; KEGG: pth:PTH_1790 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; SPTR: B0PFT8 Putative uncharacterized protein; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase; formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase" /codon_start=1 /transl_table=11 /product="methionyl-tRNA formyltransferase" /protein_id="YP_003806321.1" /db_xref="GI:302341792" /db_xref="GeneID:9492797" /translation="MTEKSLRLVFMGTPAMAAPSLEAVVAAGHRVELVITQPDRAQGR GRKLTRGAVAAAAEALGLVVAQPATMAELISLTAQARPELVVALAYGRLLPPAVLQIP PLGALNVHFSLLPALRGAAPIQRAVLAGLEQSGASVMFIDEGLDTGDIVLQEPTPIEA QDTAGSLAERLARQGAALLVRAMAQIAAGQAKRRPQDHALASHAPRLTKDEGLIDWAR PARQLDCHVRGMDPWPGAFCPTPAGPLRLFGPTLVLPDNQAAPPGLILAPPAAAPNML TVACGQGALAVGHAQAPGKRRLPAAEFLRGARLAPGQFLCGP" misc_feature 396561..397493 /locus_tag="Deba_0351" /note="methionyl-tRNA formyltransferase; Reviewed; Region: fmt; PRK00005" /db_xref="CDD:178787" misc_feature 396561..397166 /locus_tag="Deba_0351" /note="Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646" /db_xref="CDD:187715" misc_feature order(396579..396581,396591..396596,396804..396827, 396840..396842,396867..396878,396900..396902, 396960..396962,396966..396971,396978..396983) /locus_tag="Deba_0351" /note="putative active site [active]" /db_xref="CDD:187715" misc_feature order(396582..396587,396591..396593,396654..396656, 396666..396668,396672..396683,396807..396818, 396867..396869,396873..396878,396900..396908, 397161..397163) /locus_tag="Deba_0351" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187715" misc_feature order(396804..396806,396813..396815,396819..396827, 396840..396842,396867..396869,396966..396971, 396978..396983) /locus_tag="Deba_0351" /note="putative cosubstrate binding site; other site" /db_xref="CDD:187715" misc_feature order(396867..396869,396873..396875,396981..396983) /locus_tag="Deba_0351" /note="catalytic site [active]" /db_xref="CDD:187715" misc_feature 397173..397445 /locus_tag="Deba_0351" /note="C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704" /db_xref="CDD:187732" misc_feature order(397242..397244,397275..397277,397281..397283, 397416..397418,397422..397424,397428..397433, 397437..397439) /locus_tag="Deba_0351" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187732" gene 397499..398830 /locus_tag="Deba_0352" /db_xref="GeneID:9492798" CDS 397499..398830 /locus_tag="Deba_0352" /note="COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR006027:IPR001678:IPR004573; KEGG: dol:Dole_2231 sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; SPTR: A8ZUK3 Sun protein; TIGRFAM: sun protein; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB" /codon_start=1 /transl_table=11 /product="sun protein" /protein_id="YP_003806322.1" /db_xref="GI:302341793" /db_xref="GeneID:9492798" /translation="MNPRLTALDVLVQLESSPKHLDKLLSRAFQRHPAAQARDKAMAT NLTHTVLRHRAWLDHLLTPLVSRPLAKLDAPVRAALRLGAAELVVLATPAHAAVGATV EAVKAGPAAKASGLVNGVLRALTRALPAAAQAEPPGDELDRLCLRHSHPRWLLEPLAR RFGLEQAAAWAQANQSQPPLCLRVNALKASPAQVAESLAPVCEAVEAHALAPEALIVR GAAGPLWDLPGFREGLWQAQDAGAQALGRLLGVGPGMTVLDLCAGAGGKSGHLAALMA NQGRIVAVDDSAGRLEALAENMARLGVTIVEPVLADGAAWDGGGRLFEAILVDAPCSG LGVIGRRPDIRWRRSPADSAAMARIQLALARNAARLLAPGGALVYCTCTVAEAENEGV ARALLAARPELRPSWAGAEAAGEMIGADGFWRSFPRPMAADSFFAARLVKA" misc_feature 397499..398674 /locus_tag="Deba_0352" /note="16S rRNA methyltransferase B; Provisional; Region: PRK14901" /db_xref="CDD:184894" misc_feature 397499..397858 /locus_tag="Deba_0352" /note="RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-...; Region: NusB_Sun; cl00223" /db_xref="CDD:189070" misc_feature 397502..397510 /locus_tag="Deba_0352" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:29564" misc_feature 398042..>398674 /locus_tag="Deba_0352" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(398820..399077) /locus_tag="Deba_0353" /pseudo /db_xref="GeneID:9492799" gene 399418..400512 /locus_tag="Deba_0354" /db_xref="GeneID:9492800" CDS 399418..400512 /locus_tag="Deba_0354" /note="COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR015424:IPR015421:IPR015422; KEGG: sus:Acid_2338 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: C5T0P3 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family" /codon_start=1 /transl_table=11 /product="DegT/DnrJ/EryC1/StrS aminotransferase" /protein_id="YP_003806323.1" /db_xref="GI:302341794" /db_xref="GeneID:9492800" /translation="MLLNDLTAKANKYQSLISAAMQRVLASGWFVLGPEVARFEQDFA AYLGLDHCAGLANGTDAIELALKAMGVGPGDAVATVANAGMYTTTAVLASGAEPYFMD VDQKSMAATLEQVRLAVEHGVKVVVVTHLYGLIIPQIASIADFCAQHGVPLLEDCAQI HGARLDGKAAGSFGDAACFSFYPTKNLGALGDGGVVATNNADLAARVKLLRQYGWTSK YRAEVPGARNSRLDELQAAILSALLPELDAANARRREVAARLSRGIAHPEVVTPPEGG PEYVAHLYVVRCPRREALRQHLRANGIASEVHYPIADHRQPLFGERFAHVRLATTERL VDEILTLPCYPEMSDAQADQVIAVVNNWSI" misc_feature 399418..400500 /locus_tag="Deba_0354" /note="Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399" /db_xref="CDD:30748" misc_feature 399472..400497 /locus_tag="Deba_0354" /note="3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616" /db_xref="CDD:99740" misc_feature order(399589..399594,399883..399885,399892..399894, 399955..399957,399967..399972,400339..400341) /locus_tag="Deba_0354" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99740" misc_feature order(399589..399594,399664..399666,399883..399885, 399892..399894,399955..399957,399970..399972) /locus_tag="Deba_0354" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99740" misc_feature 399970..399972 /locus_tag="Deba_0354" /note="catalytic residue [active]" /db_xref="CDD:99740" gene 400500..401462 /locus_tag="Deba_0355" /db_xref="GeneID:9492801" CDS 400500..401462 /locus_tag="Deba_0355" /note="COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ppf:Pput_3929 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C5T0P4 glycosyl transferase family 2; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806324.1" /db_xref="GI:302341795" /db_xref="GeneID:9492801" /translation="MVNITYSLVIPVYLNQSSIPRLLQALEEMHQRLDRELEVVFVVD GSPDQSYALLRDALPSLPYPAQLLGHSRNFGSFPAVRSGLLAARGRYFAVMAADLQEP PELILDFFRALKADECDVAIGTRNSRNDPPLSRLASSLFWGLYRRVIAPEMPEGGVDV FGCDRAFRDQLLQLEESRSSLIALIFWLGFRRKLVGYDRRERQEGKSSWTLRKRIDYM RDSIFAFSDLPIRLLMRLGVIGSALSLSLGAVIILAKLLGVIQVPGYAATMLAVLCLG ALNLLGLGLVGTYAWRAYENSKQRPLAIVSMRMSNHPPREPEKG" misc_feature 400521..401069 /locus_tag="Deba_0355" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature order(400530..400532,400536..400538,400791..400793) /locus_tag="Deba_0355" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133030" misc_feature order(400629..400631,400788..400793) /locus_tag="Deba_0355" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature 400785..400793 /locus_tag="Deba_0355" /note="DXD motif; other site" /db_xref="CDD:133030" gene 401464..402234 /locus_tag="Deba_0356" /db_xref="GeneID:9492802" CDS 401464..402234 /locus_tag="Deba_0356" /note="COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR011004:IPR018357; KEGG: rpi:Rpic_0635 hypothetical protein; PFAM: transferase hexapeptide repeat containing protein; SPTR: B2U7C4 Putative uncharacterized protein; PFAM: Bacterial transferase hexapeptide (three repeats)" /codon_start=1 /transl_table=11 /product="transferase" /protein_id="YP_003806325.1" /db_xref="GI:302341796" /db_xref="GeneID:9492802" /translation="MTRIHPTAIVSPEAQLGADVVIGPFCVVYDNVIIGDGSVIEAFC EIGYPTPRADGKPLCIGKGGRIRSHSLFYEGSTFGDNLITGHRVTVREGTTAGENLQI GTLDDIQGSCVIGDFVRFHSNVHIGQLSTIGDFVWIFPYVVLTNDSRPPSEHLVGASI GDYAAIATMSVVLPGVKVGANTLVGAHSLVGKDVPDGMAVSGSPAKIMCEASQLKLKD GTGRQAYPWINHFRRGYPEEVVSRWLDELQARQQQREA" misc_feature <401473..401862 /locus_tag="Deba_0356" /note="Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160" /db_xref="CDD:193687" misc_feature order(401524..401526,401530..401532,401542..401544, 401548..401550,401578..401580,401596..401598, 401602..401604,401692..401694,401725..401730, 401734..401736,401797..401799,401830..401832, 401836..401838,401842..401844) /locus_tag="Deba_0356" /note="putative trimer interface [polypeptide binding]; other site" /db_xref="CDD:100038" misc_feature order(401692..401694,401713..401718,401734..401736, 401803..401805,401842..401844) /locus_tag="Deba_0356" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:100038" misc_feature 401752..402090 /locus_tag="Deba_0356" /note="WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization...; Region: LbH_WxcM_N_like; cd03358" /db_xref="CDD:100048" misc_feature order(401812..401814,401818..401820,401842..401844, 401866..401868,401872..401874,401890..401892, 401908..401916,401950..401952,401956..401958, 401965..401967,402022..402024,402070..402072) /locus_tag="Deba_0356" /note="putative trimer interface [polypeptide binding]; other site" /db_xref="CDD:100048" misc_feature order(401818..401820,401824..401826,401908..401910, 401914..401916,401956..401958,401962..401967, 401980..401982,402016..402021,402034..402039, 402064..402069,402073..402075) /locus_tag="Deba_0356" /note="putative active site [active]" /db_xref="CDD:100048" misc_feature order(401818..401820,401824..401826,401908..401910) /locus_tag="Deba_0356" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:100048" misc_feature order(401908..401910,401914..401916,401956..401958, 401962..401967,401980..401982,402010..402012, 402016..402021,402034..402039,402058..402060, 402064..402069,402073..402075,402085..402087) /locus_tag="Deba_0356" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:100048" gene 402237..403118 /locus_tag="Deba_0357" /db_xref="GeneID:9492803" CDS 402237..403118 /locus_tag="Deba_0357" /note="COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterProIPR001451:IPR008894:IPR011004:IPR011051:IPR 018357; KEGG: rfr:Rfer_0690 WxcM-like; PFAM: WxcM domain protein domain protein; transferase hexapeptide repeat containing protein; SPTR: C5T0P5 WxcM domain protein; PFAM: WxcM-like, C-terminal" /codon_start=1 /transl_table=11 /product="WxcM domain protein" /protein_id="YP_003806326.1" /db_xref="GI:302341797" /db_xref="GeneID:9492803" /translation="MQSSKLCHLCAGATIAASARLGDHVVVYPGATVADDCLVAGFTQ LWPGVRLERGACLGPGVTIQPPDEADASTVSFGPNCRIGANATILRGVRVGEGAVVEP GSVVAQSVPPHAIVSGAPARITGYVDSRSAQQVLAWRGQAEVQETGAVVRLDVGDVTL HRLSLVHDPRGDLVFGEFARDIPFAVKRYFMVFNVPSEKVRGEHAHRVCHQFLICAKG GCAVVVDDGATRCEVFLDSPDLGLYLPPMTWGTQYKCSGDTLLCVFTSHYYDPADYIR DYAEFLALVHKSPNNAA" misc_feature <402255..402596 /locus_tag="Deba_0357" /note="Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160" /db_xref="CDD:193687" misc_feature order(402276..402278,402282..402284,402294..402296, 402300..402302,402330..402332,402348..402350, 402354..402356,402402..402404,402417..402422, 402465..402467,402495..402497,402507..402509, 402513..402515,402519..402521) /locus_tag="Deba_0357" /note="putative trimer interface [polypeptide binding]; other site" /db_xref="CDD:100038" misc_feature order(402402..402404,402408..402413,402465..402467, 402501..402503,402519..402521) /locus_tag="Deba_0357" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:100038" misc_feature 402705..403091 /locus_tag="Deba_0357" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 403108..403533 /locus_tag="Deba_0358" /db_xref="GeneID:9492804" CDS 403108..403533 /locus_tag="Deba_0358" /note="InterPro IPR007267; KEGG: gym:GYMC10_5809 GtrA family protein; PFAM: GtrA family protein; SPTR: C5T0P6 GtrA family protein; PFAM: GtrA-like protein" /codon_start=1 /transl_table=11 /product="GtrA family protein" /protein_id="YP_003806327.1" /db_xref="GI:302341798" /db_xref="GeneID:9492804" /translation="MRLEQLLRRTPRWLRFIFGGGVNTVFTYGVYLALNLIMTYRWAY LIAYVLGVVFAYYFNAVFVFDVRLSWKGLFAYPVVYIVQYGVSALLLEGLVKALDMSP KLAPLVVIVVMIPITYFLNKYVLKASEKTVAPSGKIIDK" misc_feature 403150..403479 /locus_tag="Deba_0358" /note="GtrA-like protein; Region: GtrA; cl00971" /db_xref="CDD:193991" gene 403634..405784 /locus_tag="Deba_0359" /db_xref="GeneID:9492805" CDS 403634..405784 /locus_tag="Deba_0359" /note="KEGG: ppf:Pput_3927 hypothetical protein; SPTR: A5W7E1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806328.1" /db_xref="GI:302341799" /db_xref="GeneID:9492805" /translation="MTGGPTNYSLSDILARIIKISASLAAITVALWFAFSLYGQVVFV VDVTSDTKSVSQLFFKGDGEEYSQIMSATLIINVERQELAYKVGAGLSCTALRWDPAT KGGMFIIHGAWIEYLGRRFYIDIKRPAGIDQIKSYVARPGGIVVIAKATATDPQIHFD PRIHRLIAWQLALSTLPVLIIGVVVCLLHFFRSRLEEFEQAGVRLFQNLLDDGLTLKR FGVFLAMAMAINLYSLANFTLSTDDELAALRLNPVGWVAQGRWFAYLVEKYLLPQPVL PYLPELIFNVTIAFSYMLIVRGHNLSFNWRVYLAFPIFCTFPTWPFLSGFCANLPSAG LGLLFISLAFYIFVRSNYSFTNAASARWTILSIAVQSLLIAMAFAAYQSLFLLYVAAG SGAILLRLIAPDEQPDVHVKLAFSTFIRLMLTGLLGFMLYLAINFLFQRFFATGSEYI AGFFRPDHFFNDPSRVLKLVLSEALTFYSGSARKFSDNLTAVMALSVAACACVVLKSL PQPKKLLSSLFFFSATLLAPFALTLAAGGVVPSRTFVSLPYVVWLLAIVTLTAKRASA IFICAAIVIAVTFQSIRTTSQYAAASSITLARDKVLAADIYRRMAELGFDPKQQLVID VFGISEFNNIFPRREGLGSSFFEWNQVGNVRRIGSLLTMLGYGNVKGLGNDLRPKYTD AFKKMRPWPAVGSVAKVDGVFLIKLGDTPDKMHE" gene complement(405853..406506) /locus_tag="Deba_0360" /db_xref="GeneID:9492806" CDS complement(405853..406506) /locus_tag="Deba_0360" /note="COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: gur:Gura_4185 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: A5G960 phosphoglycerate mutase; PFAM: phosphoglycerate mutase family; TIGRFAM: alpha-ribazole phosphatase" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase" /protein_id="YP_003806329.1" /db_xref="GI:302341800" /db_xref="GeneID:9492806" /translation="MQRRQQRKHTRVYLWRHPEVRGVADGRVYGNMDVGLTPRGQRQV ALVAERMAETRLDAIYSSDLSRSLTTAEAVGRAQKARLRPVAVRELRELNLGVWEGLT FKEIMEKYPDALKARYEDLANFKIDGGESLEEMSRRVMPAFEQIVADHRGGEVCVVSH SGVNRILLTRMLGAPLDRIFRIDQDFACLNVVDIFNDGTPLVRRINDLMEDPAWLEH" misc_feature complement(405889..406476) /locus_tag="Deba_0360" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature complement(order(406024..406029,406309..406311, 406456..406461)) /locus_tag="Deba_0360" /note="catalytic core [active]" /db_xref="CDD:132718" gene 406624..407598 /locus_tag="Deba_0361" /db_xref="GeneID:9492807" CDS 406624..407598 /locus_tag="Deba_0361" /note="InterPro IPR011467; KEGG: dal:Dalk_3698 protein of unknown function DUF1573; PFAM: protein of unknown function DUF1573; SPTR: B8FLN2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1573)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806330.1" /db_xref="GI:302341801" /db_xref="GeneID:9492807" /translation="MSTPSRVILLLLAILSLTVMPALAKPQIAFEKTEVEFSDIEEGS QQVAKFNFQNTGDMNLVIDEVNPSCGCTVAQFDKAVKPGEYGVVTLNLDTEGIVGYFR KTATVVTNDPDQPFVTLIMVGETLSAVKVEGGRRIELNGCLGQEVTAQARLTNPKGGV ALVAGVENPMKDYCHAWVERDADGKSYLLKVKAISDRPARFAGQLFLRVPGAPKVSVW VVGDIKGAFGIRPEILFFGAVTEAKLKGAARSIELTRACVDKLEEPILTYDKEKFNLV KYWEKPGEKLLLVITPNPGKLPKGAFQDTITISSGKFVFKVPMRGTIY" misc_feature 406768..406893 /locus_tag="Deba_0361" /note="Protein of unknown function (DUF1573); Region: DUF1573; pfam07610" /db_xref="CDD:148948" gene complement(407614..408120) /locus_tag="Deba_0362" /db_xref="GeneID:9492808" CDS complement(407614..408120) /locus_tag="Deba_0362" /note="InterPro IPR019587; KEGG: dol:Dole_0158 hypothetical protein; PFAM: polyketide cyclase/dehydrase; SPTR: A8ZSQ5 Putative uncharacterized protein; PFAM: polyketide cyclase / dehydrase and lipid transport" /codon_start=1 /transl_table=11 /product="polyketide cyclase/dehydrase" /protein_id="YP_003806331.1" /db_xref="GI:302341802" /db_xref="GeneID:9492808" /translation="MSLDVELTAVRRINAPRQLVWQVFCDVMSWPQWIPEAKSVHCHG GPPAIDAGARLLLDVRPLGLPVRLRAHVARVTPGRRVDIVVRWLGVTGWQSYIFDDMG DGSLVQTRERLSGWLLGPLHLLRATRRVGGMVGRWLEALAVEAQRRHQAETTPPPGRQ DQAAAFGG" misc_feature complement(407686..408084) /locus_tag="Deba_0362" /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cl14643" /db_xref="CDD:196807" misc_feature complement(order(407698..407700,407707..407715, 407722..407727,407731..407745,407779..407781, 407785..407787,407791..407793,407797..407799, 407827..407829,407833..407835,407839..407844, 407872..407874,407878..407880,407899..407901, 407905..407907,407911..407913,407938..407940, 407956..407958,407962..407964,407968..407970, 408001..408003,408046..408051,408055..408063)) /locus_tag="Deba_0362" /note="hydrophobic ligand binding site; other site" /db_xref="CDD:176854" gene complement(408117..409106) /locus_tag="Deba_0363" /db_xref="GeneID:9492809" CDS complement(408117..409106) /locus_tag="Deba_0363" /note="COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; KEGG: dol:Dole_2797 tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase; SPTR: Q1K1V6 Thiamine biosynthesis protein; PFAM: Thiamine biosynthesis protein (ThiI)" /codon_start=1 /transl_table=11 /product="tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase" /protein_id="YP_003806332.1" /db_xref="GI:302341803" /db_xref="GeneID:9492809" /translation="MNHITAKHPATALGLYSGGLDSMLAALVLRRAGVAAQVVTFQSP FFAAEAARRSALALDLPHHVVELGEDYLAMVQHPPRGHGSQMNPCVDCHAFMLARAGR LMDELGLDFLFTGEVLGQRPFSQNRGALNAVANDSGYADRLLRPLSAKLLPPTAMERA GLVERQLLQDISGRGRKRQLALAAELGLSDFPSPAGGCLLTEPGFSRRLRDLWGHEPQ AGADRIALLKLGRHLRLPAGAKLVVGRNEAENQALEQAMPDGALAMHTPEFNGPLALY FGPEHGPDLTLAAGLTAGYGQCAPGERALVALGDGRRLQVAAIDRRKAQEMLL" misc_feature complement(408552..409073) /locus_tag="Deba_0363" /note="Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide; Region: AANH_like; cl00292" /db_xref="CDD:193753" misc_feature complement(order(408978..408980,408984..408986, 409041..409052,409059..409064)) /locus_tag="Deba_0363" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:73291" misc_feature complement(408138..408926) /locus_tag="Deba_0363" /note="Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; Region: TrmU; COG0482" /db_xref="CDD:30830" gene complement(409103..409792) /locus_tag="Deba_0364" /db_xref="GeneID:9492810" CDS complement(409103..409792) /locus_tag="Deba_0364" /note="COGs: COG2454 conserved hypothetical protein; InterPro IPR007368; KEGG: scl:sce7378 hypothetical protein; PFAM: protein of unknown function DUF434; SPTR: A9EYI8 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF434)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806333.1" /db_xref="GI:302341804" /db_xref="GeneID:9492810" /translation="MNSGAAHIDQPRLAALRAAAADAREFLGRGYPRRRVLELVGDRH GLDAQARQMLARGVDAPRQADARRRKLLGLEDLRGAVVAIDGHNVLITLETALAEGPL LWADDGALRDIAAIGRNHRPGPRALAAARLAVEALAEAGAAEALFFFHQRLPKSGWLA GQTRAIAAEIGLACLAEAIVWPPGRLARHLGPVASGDRVVIEAASRPLDLAGRLARQM TPRPFIVSLSP" misc_feature complement(409127..409717) /locus_tag="Deba_0364" /note="Protein of unknown function (DUF434); Region: DUF434; cl04460" /db_xref="CDD:156085" gene complement(409847..412723) /locus_tag="Deba_0365" /db_xref="GeneID:9492811" CDS complement(409847..412723) /locus_tag="Deba_0365" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR013767:IPR003594:IPR001789:IPR011006:IPR 000014:IPR001610:IPR004358:IPR005467:IPR000700; KEGG: rpd:RPD_3277 ATP-binding region, ATPase-like; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver; SPTR: Q134I8 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003806334.1" /db_xref="GI:302341805" /db_xref="GeneID:9492811" /translation="MDWILPKLAAGLAASVIIFCVYGQLYWLHRRPFLGAWAVAWGAY LARNLLAFWLPPRFEGDNPAFWLYGALALAGAYSLLVGCRLLAERPAPRWPLAMLGLG LAWALAAYRLDQNYAVAMAPVLAATALVYAMAGWSLIAERRLDGLSRLVAGGALLTWG LGHTLVVTLLHHWLPQMLVWGLLSGAVCEVVTALALLVLFYQKSHAELIGSRQELARN QSRLLAALANLPSAVYAFGDDGRPVLWNNAARELTGYAMDELGDARQALALLLPDKAQ RRLVAESAGRAVSAQIVIGAKNGARRHVAWSDVSGLAPIEGWRAWGVASDVTASRQAQ ENLRRQSEFIWAILENAPALIMTFDTTGRVVSFNRACQRVTGFSSEQVVGRPVWEMLI PPEDRETVRLFFAEFDPAAIRPNRERQWLTADGGRADVAWSTTPIVGAGGEVEYMVAS GVDVTSQRRAEQALRQSELFHRTLLENMPDGMILTDLITGEVLHANQAAAAILGYEHH ELAGMFGFMFHPPELRQQVLPIIDGMRGGVCDQAQALPFRRKDGQMIYCDAATAHIEL DGVSCLIMFFRDSTTRTLAQERVQQVAAGVAHNFNNLLMAITSNAQALGDALRGRLGS GHQRALLHNVARAAADGQDMVRRLEAFLVSGLFESAREEVLQLADVAHTALDLARGAP AARKGVSFEIEVDPGIYVRGARGELAEVILNLLKNALDAVDGRGRVWLRGRVNGAMAE LAVSDDGPGVDPRIAERLFQPFFSTKGVRGKGLGLASSQGIIKAHGGGLRLDSAPGQP TTFVVSLPLAPAPPGAATQPEEPIEEAPAPGRDILLVEDEALVAMGAEAVLGAAGHRV RHAAGVAQARQALEERPPELLICDLGLPDGDAWDVARLLARHDAAAGRPPTPVLIITG WSLEHAAMTPPDDVPPPRRIIRKPVDKAMLLRAVSQAGQNDSQL" misc_feature complement(411713..412063) /locus_tag="Deba_0365" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(411332..411688) /locus_tag="Deba_0365" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(411362..411673) /locus_tag="Deba_0365" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(411449..411451,411464..411466, 411542..411553,411593..411595,411611..411613, 411623..411625)) /locus_tag="Deba_0365" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(411422..411424,411428..411430, 411512..411517,411524..411526,411548..411550, 411563..411565)) /locus_tag="Deba_0365" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(410960..411325) /locus_tag="Deba_0365" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(410990..411292) /locus_tag="Deba_0365" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(411068..411070,411083..411085, 411161..411172,411209..411211,411227..411229, 411239..411241)) /locus_tag="Deba_0365" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(411041..411043,411047..411049, 411131..411136,411143..411145,411167..411169, 411179..411181)) /locus_tag="Deba_0365" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(410312..>410974) /locus_tag="Deba_0365" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature complement(410312..410605) /locus_tag="Deba_0365" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(410321..410323,410327..410332, 410345..410347,410351..410353,410399..410410, 410474..410479,410483..410485,410489..410491, 410495..410497,410564..410566,410573..410575, 410585..410587)) /locus_tag="Deba_0365" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(410573..410575) /locus_tag="Deba_0365" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(410402..410404,410408..410410, 410477..410479,410483..410485)) /locus_tag="Deba_0365" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(<409961..410227) /locus_tag="Deba_0365" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(409985..409987,410060..410062, 410084..410086,410213..410218)) /locus_tag="Deba_0365" /note="active site" /db_xref="CDD:29071" misc_feature complement(410084..410086) /locus_tag="Deba_0365" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(410060..410068,410072..410077)) /locus_tag="Deba_0365" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" gene 412909..413568 /locus_tag="Deba_0366" /db_xref="GeneID:9492812" CDS 412909..413568 /locus_tag="Deba_0366" /EC_number="5.1.3.1" /note="COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056:IPR011060:IPR013785; KEGG: gyc:GYMC61_1959 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: C9RZQ3 Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase" /codon_start=1 /transl_table=11 /product="ribulose-phosphate 3-epimerase" /protein_id="YP_003806335.1" /db_xref="GI:302341806" /db_xref="GeneID:9492812" /translation="MVMIAPSILSADFAALGEGVRQAADGGADWIHVDVMDGHFVPNL TIGPPVVAAIRKVCALPFDVHLMIETPDKYIEAFAAAGADWISVHAEACTHLQRTLAH IRDLGKKAGVALNPHTPLCVLENILDDLDYVLLMSVNPGFGGQSYIPANTPKTARLRR MIEQSGREILIQVDGGVSPATIGPVAAAGASVFVAGSAIYGDKDGVAAAIAKLRAAAT A" misc_feature 412915..413520 /locus_tag="Deba_0366" /note="Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative...; Region: RPE; cd00429" /db_xref="CDD:73366" misc_feature 412918..413520 /locus_tag="Deba_0366" /note="ribulose-phosphate 3-epimerase; Region: rpe; TIGR01163" /db_xref="CDD:130231" misc_feature order(412927..412929,412933..412935,413008..413010, 413107..413109,413326..413331,413335..413340, 413428..413430,413434..413436,413494..413499) /locus_tag="Deba_0366" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73366" misc_feature order(412948..412950,412957..412959,413017..413019, 413023..413028,413032..413034,413038..413049, 413116..413118,413128..413130,413191..413193, 413197..413202,413254..413256,413263..413265, 413269..413271,413281..413283,413323..413325, 413350..413352,413356..413358,413368..413370) /locus_tag="Deba_0366" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:73366" misc_feature order(413002..413004,413008..413010,413101..413103, 413428..413430) /locus_tag="Deba_0366" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:73366" gene 413574..414095 /locus_tag="Deba_0367" /db_xref="GeneID:9492813" CDS 413574..414095 /locus_tag="Deba_0367" /note="KEGG: lxx:Lxx09000 hypothetical protein; SPTR: A6FRA1 Putative uncharacterized protein; PFAM: VanZ like family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806336.1" /db_xref="GI:302341807" /db_xref="GeneID:9492813" /translation="MTVRARDNLLLALWLAFIVCCSLWGRLAGPYLEGPQNRARALGL VAVAGLAGLAWAVVGLRRLPEGRRAAAGWALAGGALALGLLAWSRANHIEAVHVVVFG VLGLLCWRWAGHFWLGQPRLWAALIFGAAIGAADEFLQHLLPWRVGDWRDVFTNGLSS TIVCLLAWRARPD" gene 414124..414468 /locus_tag="Deba_0368" /db_xref="GeneID:9492814" CDS 414124..414468 /locus_tag="Deba_0368" /note="COGs: COG1742 conserved hypothetical protein; InterPro IPR003844; KEGG: cja:CJA_3703 hypothetical protein; PFAM: protein of unknown function UPF0060; SPTR: B3PHW0 UPF0060 membrane protein CJA_3703; PFAM: Uncharacterised BCR, YnfA/UPF0060 family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806337.1" /db_xref="GI:302341808" /db_xref="GeneID:9492814" /translation="MDQLIVIVKTAGLFVVTALAEIIGCYLPYLWLRQGRSAWLLLPA ALSLSLFAWLLTLHPAASGRIYASYGGVYVVTALLWLRFVDGARLTASDWLGAAITLA GMGVIVMGWQRA" misc_feature 414139..414462 /locus_tag="Deba_0368" /note="Uncharacterised BCR, YnfA/UPF0060 family; Region: UPF0060; cl00757" /db_xref="CDD:186176" gene complement(414524..416101) /locus_tag="Deba_0369" /db_xref="GeneID:9492815" CDS complement(414524..416101) /locus_tag="Deba_0369" /note="KEGG: mrd:Mrad2831_2771 hypothetical protein; SPTR: B9QX89 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806338.1" /db_xref="GI:302341809" /db_xref="GeneID:9492815" /translation="MKKIWIVFVGLAVVAVAAGLAVMLTPDAKKIRVILDSQGKQAVE AYLKAETGKDIALTYAKAEDTSDGLLLHDLTLAEKADPNKKIVAKTALLSELVIDTEG WGMSATFNDIVGGPGGRNGLRGQVIELSKVKVSHDGKSATMAAFKAKDLSLADDDADL RLAEAEMTGFQLENGNLVKISKGSLKNLSGQPEKGGQLRLDELNFEGLQTHSDEQFFV LDVGGLGGLKATAPGYDVAIGGAYVEGLYLDKENVFRLGKAEAKEFKCVAEGDGLEFS LFSLAGVAQMDFDEPETWHFGAGKLENVIVHGGGAKLASIASLDSETTNNNSVIAFSL NLRELWISTDSMDPAERAQMEAMGVKQIKFDAAMAYEADLKKNTLDVKEISLKGQDLG HLTLRAAFGEIKLDPNDVGRSLEASANVITMASGEFAYEDGGLVRQIIVAQAKEAGVS ADQFVEQQSAPMMAMAKQSGGQEMLALAEAMDKFLKNPVKLVVKAQPEKPVKLMDLGA MDPAAMLKLLRVTAQAN" gene complement(416221..420030) /locus_tag="Deba_0370" /db_xref="GeneID:9492816" CDS complement(416221..420030) /locus_tag="Deba_0370" /note="COGs: COG1196 Chromosome segregation ATPase; KEGG: hypothetical protein; SPTR: Q4Q3D8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="Chromosome segregation ATPase" /protein_id="YP_003806339.1" /db_xref="GI:302341810" /db_xref="GeneID:9492816" /translation="MADDHADSIAELAALVERLSRAWLAAAPQGAPAGGESVAGRPLA AWLAELWPGAAGWSGLAVDEELAALHLSRRGQERRLRLSELERLRANMDKAQARINQM RHGADQRLEAFGQALQKAQAAEERQRAMAQEAAAAARQHRKQVLAHNRWLQGLTPLGR KAFRDAQGRQVDWDHVRQVEARRRAAEARQNAEEERAHMLGLELKEAMAQRAAAARDL ALAQSADRHAARSEALAQAKLSAAAAGLSGRKALLIEAVEAEKQARELKLLCQKTRQL AQELLERAVVEAPADDPLPAARLALAEAQRRQAHRLRLEKILRAQDARLARLTRRGGE ALKAVRRVNRQIEALELALPALVATLNGPQAADPAIRGKAASELSLLLAGLDDLTPQA AQAQLEVERLRLALELGLERAKGLLEAWREAVRLGREQRNAAGQGLERARQWAAQAAA AASQAQEAGRPVLLALGGLRHGQLAPALGRVIETVGALRQRAKAALADADTLEAALND LGFVALNKPPMALKPHSLPLRRISGRNVHLSRLEALGKSARRWRGLAEGGLIRAVSQP LRQVALNLSGSLGLLAQDHGQLRQSLDQSREESSQLRQSLDQSNLQGRHLQENIARLK AVAHQQRQTIQQQSALLAQADEERRKAAAVSHRLEQAVGDIENLSLMLERSRTMAEAL RAKSLERHRRLRQSQADLAAAMSHVEISRQRQLELETTRKAPERAQGRLQASRQRLER ATAQRDELQSRLAAVEAAQAANDLRQAQAGGIQAELEAAREEARRWAALAGDMVVAMG LGHQRNQELERQVLDLAGQADDLRQRLGQLGVFLALAAKGQRAQLSSAQMSRLLERLR GARQRLAAAGRGAMGQLLLIGGLVSGLILFAADNPSKATLRGPDSVAGRALDHGEEPA EIARAAQRDQAQAVLADSTVGGPRPLPLYKPNPEMTLEERALTRRLASAAHLSPKALL RSARQLFPDRDVIDAADLHELVDASQVLAKRHPLIFQELAVRGLPKTALGLAAVTPAA EEGRALFLDRLYREYRDLGFTDELALAALTQNETAVRRLKDQWQPSQWFHGKVRPLPE VESMSLEQFVERMAPYIADRAKVFMKLKDMPVSGDIALYGRNLAFDIYCAAHKFQVPL TFMLAIGHQETWYANILGDNDLSASPFQIYQPTKLTIIDSMATAGMVAPPKTIDLQQN LSMAVFMAAYHLRELMQQAHAPAQGNRPATIDMDRVMKAYNGSDSYAGKVAGRQGELA MFLAQNL" misc_feature complement(<417724..>418170) /locus_tag="Deba_0370" /note="Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:31389" gene 420082..420585 /locus_tag="Deba_0371" /db_xref="GeneID:9492817" CDS 420082..420585 /locus_tag="Deba_0371" /note="KEGG: tcu:Tcur_3642 RNA polymerase, sigma-24 subunit, ECF subfamily; SPTR: D1CAK6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806340.1" /db_xref="GI:302341811" /db_xref="GeneID:9492817" /translation="MIAKSPGPVNKLKALSLVLAMVFIALARPAAAAEPFVIAPPTSG ADLRLLPASAWGPPESDGGDMLLKLSYVRGMIDALAYAQVAPRGASQALEGLRGLNLA EAVAAIDRYYLTDPRRRDLPPAAVLLRVLPSAEATPTPSPSPAPLQAPEDAWTPSQPA GQDGPTP" gene 420711..420803 /locus_tag="Deba_0372" /db_xref="GeneID:9492818" CDS 420711..420803 /locus_tag="Deba_0372" /note="InterPro IPR013177; KEGG: dat:HRM2_30640 hypothetical protein; PFAM: Protein of unknown function DUF1713; SPTR: C0QKQ7 Putative uncharacterized protein; PFAM: Mitochondrial domain of unknown function (DUF1713)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806341.1" /db_xref="GI:302341812" /db_xref="GeneID:9492818" /translation="MGSVIKKRRKKIRKHKHRKLLRRTRHQRRK" gene complement(421007..421636) /locus_tag="Deba_0373" /db_xref="GeneID:9492819" CDS complement(421007..421636) /locus_tag="Deba_0373" /note="COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR000189; KEGG: maq:Maqu_2905 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: A1U4R0 Lytic transglycosylase, catalytic; PFAM: Transglycosylase SLT domain" /codon_start=1 /transl_table=11 /product="Lytic transglycosylase catalytic" /protein_id="YP_003806342.1" /db_xref="GI:302341813" /db_xref="GeneID:9492819" /translation="MMQSIHKKIKLLAGVFFVINIAAIGLWLLLGSPLPPDIDWRDPA GKAAKKSFVAKLEKLQADWDMPTEQRQRMLWPVVRRMAQEGGLEPATVMAVLAVESRF RPHAISPDGALGLMQIMPGTASSLGFKSAAEAMDPIANLRAGIDYLAKLKRKYSGDLN LALAAYNAGPGMISRHGGMPPFEETQKYVQLVLSERERFRASHQALASR" misc_feature complement(421058..421372) /locus_tag="Deba_0373" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature complement(order(421139..421141,421196..421198, 421280..421282,421340..421342)) /locus_tag="Deba_0373" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature complement(421340..421342) /locus_tag="Deba_0373" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 421823..422653 /locus_tag="Deba_0374" /db_xref="GeneID:9492820" CDS 421823..422653 /locus_tag="Deba_0374" /EC_number="2.4.2.1" /note="COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845:IPR011268; KEGG: dvu:DVU2230 purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; PRIAM: Purine-nucleoside phosphorylase; SPTR: B6WVY3 Putative uncharacterized protein; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: phosphorylase superfamily; TIGRFAM: inosine guanosine and xanthosine phosphorylase family" /codon_start=1 /transl_table=11 /product="inosine guanosine and xanthosine phosphorylase family" /protein_id="YP_003806343.1" /db_xref="GI:302341814" /db_xref="GeneID:9492820" /translation="MELVNKVNAAVNYLEPLLPADFRPMVGLTLGTGLSGLAAKIEPV LSVAYQDIPQFPVSTVESHAGELIFGRLGGQNVAALAGRFHLYEGYGPAEVTMPVRVL AELGARYFLFSNAAGGLDTSWRAGRVMLVTDHINLTGRNPLVGPNVEAWGVRFPEMVQ VYDPCLLALARQVAAEKDVAMYEGVYVGLMGPSMETPAETRMLGVLGAQAVGMSTVLE VIAARHHGLRVAAFSAISNINDPADMQPAPIELVIENAGMAGDDMATLIEGVLARLTN " misc_feature 421826..422644 /locus_tag="Deba_0374" /note="Phosphorylase superfamily; Region: PNP_UDP_1; cl00303" /db_xref="CDD:193757" gene 422673..423980 /locus_tag="Deba_0375" /db_xref="GeneID:9492821" CDS 422673..423980 /locus_tag="Deba_0375" /note="COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680:IPR011059; KEGG: sfu:Sfum_2961 amidohydrolase; PFAM: amidohydrolase; SPTR: A0LMI3 5-methylthioadenosine/S-adenosylhomocysteine deaminase; PFAM: Amidohydrolase family" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_003806344.1" /db_xref="GI:302341815" /db_xref="GeneID:9492821" /translation="MLLIQNGMLITMDGPAQAIADGVVLADGPRIVYAGPRQDAPPAQ GAQVLDAKGGLIMPGLINCHAHTAMTLVRGLADDLPLAQWLNEHIFPVEAKLDGQAVH WGTMLGCLEMIRGGVTCFNDMYLFAHDVGRAVERSGLRAVIGEVLYDFPSPCYGPLEN GFKVCAELIERYKDHPRLKGAVVTHALYTCSRPLMERAGRLAADAGVDLVIHLAETAV ENELVLEKWGQRPYEVMEDLGLCGPNLLIDHAVHLSDAEIRRAAAAGVRVAHCPESNM KLASGVMPLRRMLAAGLTVGLATDGCASNNNLDMFEEMDSCAKLCKVSTMDPTAAPAA QVLALATSQAGAAMGMAGQIGVLKAGALADVIVIDTDQPHLTPMYNPVSHLVYAARAA DVMHTVCHGQVLMQDRQLTTIDQDEVLRNFRRCADALTGGKLL" misc_feature 422676..423965 /locus_tag="Deba_0375" /note="N-ethylammeline chlorohydrolase; Provisional; Region: PRK06038" /db_xref="CDD:180363" misc_feature 422676..423905 /locus_tag="Deba_0375" /note="TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are...; Region: ATZ_TRZ_like; cd01298" /db_xref="CDD:30041" misc_feature order(422862..422864,422868..422870,423306..423308, 423315..423317,423417..423419,423570..423572) /locus_tag="Deba_0375" /note="active site" /db_xref="CDD:30041" misc_feature order(422940..422942,422949..422951,423039..423044, 423105..423110) /locus_tag="Deba_0375" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:30041" gene 423977..425284 /locus_tag="Deba_0376" /db_xref="GeneID:9492822" CDS 423977..425284 /locus_tag="Deba_0376" /note="COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680:IPR011059; KEGG: sat:SYN_01991 chlorohydrolase/deaminase family protein; PFAM: amidohydrolase; SPTR: Q2LUH4 5-methylthioadenosine/S-adenosylhomocysteine deaminase 2; PFAM: Amidohydrolase family" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_003806345.1" /db_xref="GI:302341816" /db_xref="GeneID:9492822" /translation="MSQITVIAGGPLIADVKTVFAKGLLAFDDQGVIYAGEAAGYDPP AHARRLDVQGGLIMPGLINAHCHGAMTLFRGLADDLLLEDWLHKHIFKAEARFVGPAM VGLCTRLAAAEMLLGGTTTVCDAYFCMDQAAEAYQAAGMRAVVAQGILDFPTADCPDP ARNLDLARQFIQRWQGVSPLITPALFAHSVYTCSPQTLTGVADLARELGVIWMTHLSE TVAEVALTRRMHNNTPPRHLEALGLLDGLNVAVHCSALAPGEAELLAQRGVAVASCVE SNMKLSSGLAHIPTLRAAGLTVALGTDGAASNNDLSMFGEMRLDALTSKIYSADPSCL PASQALDCATRQGARALGLGAVCGRLAPGLAADVVILRGDEPRLQPMYNPLSLVVYAA GAADVRHVFVAGRQVVENGRLLTMDLAQIMAGVRQLAVDVGRA" misc_feature 423980..425263 /locus_tag="Deba_0376" /note="N-ethylammeline chlorohydrolase; Provisional; Region: PRK07228" /db_xref="CDD:180895" misc_feature 424010..425218 /locus_tag="Deba_0376" /note="TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are...; Region: ATZ_TRZ_like; cd01298" /db_xref="CDD:30041" misc_feature order(424169..424171,424175..424177,424619..424621, 424628..424630,424730..424732,424883..424885) /locus_tag="Deba_0376" /note="active site" /db_xref="CDD:30041" misc_feature order(424247..424249,424256..424258,424349..424354, 424415..424420) /locus_tag="Deba_0376" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:30041" gene 425318..426355 /locus_tag="Deba_0377" /db_xref="GeneID:9492823" CDS 425318..426355 /locus_tag="Deba_0377" /note="COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: sru:SRU_2696 endonuclease/exonuclease/phosphatase family protein, PFAM: endonuclease/exonuclease/phosphatase; SPTR: B4WQH8 endonuclease/exonuclease/phosphatase family; PFAM: endonuclease/Exonuclease/phosphatase family" /codon_start=1 /transl_table=11 /product="endonuclease/exonuclease/phosphatase" /protein_id="YP_003806346.1" /db_xref="GI:302341817" /db_xref="GeneID:9492823" /translation="MLKKMTIFLLLLAAGLAGLFFWIGSANLPAEQWSSLEHLPSVAA TEFRPGQELVVVSYNIGYFSGMTNNLPVARSRELYAANLARAVAALGPLRPDALALQE VDFAASRSFDQDQAVLLAQGLGLGWLTKAVGWDKKYVPYPYWPPQHHFGRVVSGQALL ARYPLADLERHALAPRGDTPFYYNALYMDRLVQTAALELGGRRVWLACLHLEAWDRPT RERQARQAAAILARLRERGPLIVMGDFNTTPTWARVQTGFVDEPEQDFRGEATLAAMT ALSLREAFDQGGSADEAATLTFPADRPSRKLDHIFYDPTRLELVWRRVVVEAGQASDH LPVAAAFRLKD" misc_feature <426029..426340 /locus_tag="Deba_0377" /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490" /db_xref="CDD:197411" misc_feature order(426047..426049,426053..426055,426239..426241, 426314..426319) /locus_tag="Deba_0377" /note="putative catalytic site [active]" /db_xref="CDD:197306" misc_feature order(426053..426055,426317..426319) /locus_tag="Deba_0377" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197306" misc_feature 426314..426316 /locus_tag="Deba_0377" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197306" gene complement(427127..427651) /locus_tag="Deba_0378" /db_xref="GeneID:9492824" CDS complement(427127..427651) /locus_tag="Deba_0378" /note="KEGG: dba:Dbac_2704 hypothetical protein; SPTR: C7LTL4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806347.1" /db_xref="GI:302341818" /db_xref="GeneID:9492824" /translation="MASEEQTKRLLSAGQAAELLRALAAELDQGRLGAAVLADQALLE LKQALKEKDGKTSLELKLKYRGPAAQAAPKSAGPAPRGYKSLKKAMAKSWGQLEKTLA QGQTPSPELTRLFVEQSRRMVGFAGKGDEHYPAYLALVQALQTAVEAGALDQARQAAQ DLAQRKKACHEQYK" gene complement(427676..428101) /locus_tag="Deba_0379" /db_xref="GeneID:9492825" CDS complement(427676..428101) /locus_tag="Deba_0379" /note="KEGG: drt:Dret_1987 hypothetical protein; SPTR: C8X4P8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806348.1" /db_xref="GI:302341819" /db_xref="GeneID:9492825" /translation="MGKNEIEIKSSLNLAQAAGYLRDLAACLEQGRVVLQRGDEFMEL CPAQNLELELEGAAKKGRQKISLELSWRLGHVEPTAQLKISAEAPTPPPVEEAAPEAP AAPVAAGETPVIVEAPAESLTKAETPEDEEKKAGRGGRK" gene complement(428137..429336) /locus_tag="Deba_0380" /db_xref="GeneID:9492826" CDS complement(428137..429336) /locus_tag="Deba_0380" /note="COGs: COG0391 conserved hypothetical protein; InterPro IPR002882; KEGG: dma:DMR_20270 hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; SPTR: C4XRH3 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0052; TIGRFAM: conserved hypothetical protein, cofD-related" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806349.1" /db_xref="GI:302341820" /db_xref="GeneID:9492826" /translation="MTDRPVTFARLSRLARLPDPVRLARFRRAPDLGPRVLFFSGGSA LHQLCRRLIDHTHNSIHVITTFDSGGSSAVLRRAFGMPAVGDIRNRLMSLADPGIQGN PQVARLFAHRLPSDQSAQTLAETLALMVAGRHPLVAATPDPLRKIIRQHLARLAQALP ADFDLRGASLGNLTLCGGYLDHDRHLDPVIFMFSKMAEVRGVVRPVLNADLHLAAELA DGRLVLGQHLLTGRQGPALSAPIQRLYLCAGLDDPRPARAAVRQKLLDLIGQAELICF PMGSFYTSVVANLLPDGVRQAVAQAPCPKVYVPNLAGDPEQIGMTLSGAVATLLAYLG QGQPPGARPLDLVLIDSRLEYPGGRARPEELRELGVDVIDAPLVADPAAKTFDPDCLL GVLLSLI" misc_feature complement(428146..429231) /locus_tag="Deba_0380" /note="family of mostly uncharacterized proteins similar to B.subtilis YvcK; Region: YvcK_like; cd07187" /db_xref="CDD:132873" misc_feature complement(428194..429231) /locus_tag="Deba_0380" /note="Uncharacterised protein family UPF0052; Region: UPF0052; pfam01933" /db_xref="CDD:190165" misc_feature complement(order(428395..428400,428485..428487, 428497..428502,429208..429216)) /locus_tag="Deba_0380" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:132873" misc_feature complement(order(428821..428823,429073..429075, 429082..429084,429124..429126,429136..429138)) /locus_tag="Deba_0380" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:132873" misc_feature complement(order(428749..428754,428761..428763, 428794..428799,428803..428808,428815..428820, 428827..428829,428842..428844)) /locus_tag="Deba_0380" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132873" gene complement(429333..430448) /locus_tag="Deba_0381" /db_xref="GeneID:9492827" CDS complement(429333..430448) /locus_tag="Deba_0381" /note="KEGG: dma:DMR_18060 hypothetical protein; SPTR: C4XQD2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="HPr kinase" /protein_id="YP_003806350.1" /db_xref="GI:302341821" /db_xref="GeneID:9492827" /translation="MSAKTPTAPQLAQRLGLDDRPLAHALDLNLAGCRLRLESDSPGL VNGLRRYFSDFLAHGQAGPADIIVRAIEAAAPELGLALREKAPDPGKDKIKEEFLDLP DGGRVVRKRLTGMVFLLGDGLNLAVGPCQANDNQVVNFINSRHIQWLLDRGRLLCHAA AVANHAGGLAIAGLSGRGKSTLALHMMGLGLDFISNDRLLIGRDARGLRMEGVAKLPR INPGTVLGTPGLQGVIPPDDLAGFAALPPDELWRLEHKYDAYLDECFGPGRFRLGAPL DGLVVLTWRHGGGPFCLERVTAERKAQLLEAFIKSPGVFYLPPQGQGPDMSVAAYLAM LGDCPVHELSGGADFPAAAKALHGLLPPAIPRLAYQP" gene complement(430445..431341) /locus_tag="Deba_0382" /db_xref="GeneID:9492828" CDS complement(430445..431341) /locus_tag="Deba_0382" /note="COGs: COG0189 Glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR011761; KEGG: dba:Dbac_2700 RimK domain protein ATP-grasp; PFAM: RimK domain protein ATP-grasp; SPTR: C7LTL0 RimK domain protein ATP-grasp; PFAM: RimK-like ATP-grasp domain" /codon_start=1 /transl_table=11 /product="RimK domain protein ATP-grasp" /protein_id="YP_003806351.1" /db_xref="GI:302341822" /db_xref="GeneID:9492828" /translation="MSANASKRVGVVGLPEGWSTMRLQQALTQRGATAPIIDPRRLEL DLERGVVRHLGQNLAEMDGLALKKLGASYSPHLLDRLEMLRFLAEGGLPIFSAPARVG PMIDRLGCTLLLRQNDIPMPPTVVTEDQDVALEALERLGPCVLKPLYTSKARGMIVLE PGNGCAAALAAFREQGHRFFYLQQMVRPGGRDLGLVFLGGQYLASYARAARFEPVHGR PQPGGGKYLACDPGPEVIALAARAQAPFGLDFTCVDVAETADGPVVFEVSAFGGFRGL LESQGVDAAGLYADYILEKLRS" misc_feature complement(430451..431287) /locus_tag="Deba_0382" /note="Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]; Region: RimK; COG0189" /db_xref="CDD:30538" misc_feature complement(430466..431026) /locus_tag="Deba_0382" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene complement(431338..432987) /locus_tag="Deba_0383" /db_xref="GeneID:9492829" CDS complement(431338..432987) /locus_tag="Deba_0383" /note="COGs: COG0704 phosphate uptake regulator; InterPro IPR008170:IPR002575:IPR011009; KEGG: dma:DMR_33380 hypothetical protein; PFAM: PhoU family protein; aminoglycoside phosphotransferase; SPTR: C4XK89 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF227); PhoU domain" /codon_start=1 /transl_table=11 /product="phosphate uptake regulator, PhoU" /protein_id="YP_003806352.1" /db_xref="GI:302341823" /db_xref="GeneID:9492829" /translation="MQLPAGLDENFRFMILEVRKQLEETLSCLAEPTLARREKITNRD DYIDSMKGLIEEKSFSCLVGQPVDRATANLLRCLITMASNLERIADFAVNVVGQLQYL GEARFLTRYDYQPYFDEVLAGLEMIVPAMERRDLSLALGICQCEFRLDDLFKATMGQI LTDLQRGRHTGELVTALFIYRYLERMGDSLLNIGEALIFVLVGERLKIHQYEALQDTL AASGLGAPMTEVEFSSFWGNRSGCKVGAVADKSDSSRAHRVIFKEGVRAKILAEKQSI EHWQKVMPGLPPRLFGFQENNGQASLLLEYLSGCTVQEVLLTAADEVVQNALFMTTET MGAVWRATRCESPGRANFIGQLLSRLEDVYRVHPRFEGEAVQIGPLEVPSVGMLLRRV QEIDAELCCPFSVLIHGDYNLNNIIYDHKQQRLHYLDLHRSDPGDYAQDVSVFIASCL RLPVFEPALRRRLGAAAREILAFALAFAQQNNDASFEARLALGLIRSLMTSTRFELNE DFAHHLYLTSLYLMEKIIGHRGRPWAEFRLPGQALVGLEVI" misc_feature complement(432373..432969) /locus_tag="Deba_0383" /note="phosphate transport system regulatory protein PhoU; Region: phoU_full; TIGR02135" /db_xref="CDD:162721" misc_feature complement(432703..432957) /locus_tag="Deba_0383" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" misc_feature complement(432397..432639) /locus_tag="Deba_0383" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" misc_feature complement(431626..>431937) /locus_tag="Deba_0383" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" gene complement(433012..433299) /locus_tag="Deba_0384" /db_xref="GeneID:9492830" CDS complement(433012..433299) /locus_tag="Deba_0384" /note="KEGG: tcx:Tcr_1766 hypothetical protein; SPTR: A6GK59 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806353.1" /db_xref="GI:302341824" /db_xref="GeneID:9492830" /translation="MSSSDNSFKHVSLQDSQSIVGYLEALSAGLKQGALLFCTENKRL VLKPQGLIKLEVEAKRKDEQMKLTLKFRWNEESLGEGDLAVRPMTMGDDGR" gene complement(433324..434475) /locus_tag="Deba_0385" /db_xref="GeneID:9492831" CDS complement(433324..434475) /locus_tag="Deba_0385" /note="KEGG: dma:DMR_33400 hypothetical protein; SPTR: C4XK91 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806354.1" /db_xref="GI:302341825" /db_xref="GeneID:9492831" /translation="MTTANIEIDNKAAGPGPEDQERLDEEIFRDLVSVELSAEQRARL VAPPAVHPRQRAVLAVHWHPEWIPIELTMARLAASYPNRQNQLIIPTQHNELLCLGEL AGVEIDCYSSGFNRKVQLLLHMRAEAVERADVLRSMLSHTFKYRGGQLWEFIDSIVEP AWDARMQEAAAETGANDEVVAFVRDCAARLRALLADHESDVPPMMIKNKLVSEFIAAQ RPWRPERMISRALLLAKAVKQIVKREFSLQYFYRASEVIEEARGLGAGVVIPHPEQFW PILLADYDVDGYEVWNPQSREYTEFLIGVLNRQNKSRAHGERRLLVFMGDDTHMSEKA KPPELQDRQKAAREVGLQPAWDDPAIRKALMLAGMDRDRVIDQYRGRLA" gene 434952..436604 /locus_tag="Deba_0386" /db_xref="GeneID:9492832" CDS 434952..436604 /locus_tag="Deba_0386" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_0599 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FHL6 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806355.1" /db_xref="GI:302341826" /db_xref="GeneID:9492832" /translation="MNVAHHSSWPNRMPKKLDYPQTPLHDLLATSARRFPDKPGVIYY GQVITYAQLWDQAQRLAGALAAMGLQKGDRVALYMQNCPHYLIGCFGVYAAGGVVAPL NPMLVERELYNIVGDSGARFIITTTELYGRVAPIAADLGVERVICGSLWDYMPENPAI PAPDFMAATPRAIDGAAAWLETLASAPGAPQVDIDIKADLAMLPYTAGSTGLPKGCMH THATVMSNVWSAMYWTQLSSGANVLSCLPFFHVTGFVHSLAAPLAAGATLVMLTRWDR EAALQAVEKYGVTHFVNITAMMADILSAKDIESRDLASLQMVGGGGAPLPVALGQRLK DLTGLDYVEGYGMTETISQTHFNPCDKVKLGSIGIPDFGVDARVIDIETLRELPAGQQ GELVIHGPEIMLGYWNKPVETKEAFIELGGKRFLRTGDICRMDEEGYFFITDRLKRMI NAAGFKVWPAEIEAVLYKHPHVLEACVISAPDAKRQETVKALIVAKPGCQPDPEEIMA WSRKEMSAYKAPRIVEIVAALPKSGAGKILWRQVQEQEMAKR" misc_feature 434988..436601 /locus_tag="Deba_0386" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK08314" /db_xref="CDD:181379" misc_feature 435096..436586 /locus_tag="Deba_0386" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 436628..437617 /locus_tag="Deba_0387" /db_xref="GeneID:9492833" CDS 436628..437617 /locus_tag="Deba_0387" /note="COGs: COG1735 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001559:IPR017947; KEGG: dal:Dalk_0598 aryldialkylphosphatase; PFAM: aryldialkylphosphatase; SPTR: B8FHL5 Aryldialkylphosphatase; PFAM: phosphotriesterase family" /codon_start=1 /transl_table=11 /product="aryldialkylphosphatase" /protein_id="YP_003806356.1" /db_xref="GI:302341827" /db_xref="GeneID:9492833" /translation="MAAKMVNTVAGPVSADELGLTLMHEHIVFGYPGWNGDVTLGAFD RPAAVKQAVETLSALKQAFGLGTLVDATPNETGRDPLLLKEVSEKSGVNIVCSTGYYS QAEGGAAYFAFRASLGDAVAEIREMFLTELTKGVADTGVRPGVIKLASSQGQITDYEK MFFTAAVAAQKETGAPIITHTEHGTMGPEQAKFLLELGADPKRTMIGHMCDNLDLDYQ EAVLRQGVYVSWDRMGLQGLAGCPMEATRYPVLNELIQRGWAKQLMLSHDSINTWLGR PLSIPEAALPMVIDWRPDHIFNKVAPALLAGGATQADLDVILKDNPRRLFAGV" misc_feature 436643..437608 /locus_tag="Deba_0387" /note="Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]; Region: Php; COG1735" /db_xref="CDD:31921" misc_feature 436682..437605 /locus_tag="Deba_0387" /note="Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active...; Region: PTE; cd00530" /db_xref="CDD:30033" misc_feature order(436697..436699,436703..436705,437066..437068, 437165..437167,437249..437251,437429..437431) /locus_tag="Deba_0387" /note="active site" /db_xref="CDD:30033" misc_feature order(436703..436705,436928..436930,437165..437167, 437429..437431) /locus_tag="Deba_0387" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:30033" misc_feature order(436718..436720,436847..436849,436982..436984, 436994..436996,437015..437017,437036..437038) /locus_tag="Deba_0387" /note="homodimer interaction site [polypeptide binding]; other site" /db_xref="CDD:30033" gene 437792..439831 /locus_tag="Deba_0388" /db_xref="GeneID:9492834" CDS 437792..439831 /locus_tag="Deba_0388" /note="COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterProIPR006935:IPR001650:IPR001943:IPR009055:IPR 014001:IPR004807:IPR014021; KEGG: glo:Glov_3444 excinuclease ABC subunit B; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: B3E245 UvrABC system protein B; TIGRFAM: excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit" /codon_start=1 /transl_table=11 /product="excinuclease ABC, B subunit" /protein_id="YP_003806357.1" /db_xref="GI:302341828" /db_xref="GeneID:9492834" /translation="MDFGSEQTFQYWRTAPSQAQFKLESDYQPQGDQPQAIAQLTAGL AQGCKRQVLLGVTGSGKTFTMANVIAASGLTTLVLAPNKTLAAQLYGEFKALFPHNAV EYFVSYYDYYQPEAYIPASDTYIEKDSSINERIDKMRHAATFALLTRQDVIIVASVSC IYGLGSPEAYAGMLLYLQRGDQVGREAVLRKLVEMLYERNEFSFHRGVFRARGDVVEI FPAYEEERAVRIEFFGDEVERISFIDPLRGVALEQTDKVVIFPASHYVTTEGVREAAI AAIRAELAERIKYYDDNARFIESQRIRERTLFDIEMMKELGWCHGIENYSRHLTGRQP GQPPPTLLDYFPKKWLLIIDESHITAPQVRGMYNGDRSRKATLVDFGFRLPSALDNRP LNFDEFNALLDNVIYVSATPADYELEQAQGVVVEQLIRPTGLIDPIVEVRPASGQVDD VMAELRLVAGRGERALVTTLTKRMAEELTEYLTEVGLSVKYLHSDIDTIARVELLQGL RRGDFDILVGINLLREGLDLPEVSLVAILDADREGFLRSTRSLIQTAGRAARNVGGKV IFYADQITDSIARAMEETSRRRVAQEQYNQEHGITPESIKKAIGAMLPPEIAADYPAP PPLTAAVADPGELPAIIADLRRRMKEAAKGLRFEEAAELRDQIKALEEQDLLWRG" misc_feature 437840..439816 /locus_tag="Deba_0388" /note="excinuclease ABC subunit B; Provisional; Region: PRK05298" /db_xref="CDD:180000" misc_feature 437936..>438136 /locus_tag="Deba_0388" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 437963..437977 /locus_tag="Deba_0388" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 439112..439498 /locus_tag="Deba_0388" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(439199..439210,439268..439273,439346..439354) /locus_tag="Deba_0388" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(439370..439372,439448..439450,439460..439462, 439469..439471) /locus_tag="Deba_0388" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 439493..439618 /locus_tag="Deba_0388" /note="Ultra-violet resistance protein B; Region: UvrB; pfam12344" /db_xref="CDD:192995" misc_feature 439712..439810 /locus_tag="Deba_0388" /note="UvrB/uvrC motif; Region: UVR; pfam02151" /db_xref="CDD:145355" gene 439929..440756 /locus_tag="Deba_0389" /db_xref="GeneID:9492835" CDS 439929..440756 /locus_tag="Deba_0389" /note="COGs: COG1639 signal transduction protein; InterPro IPR013976:IPR003607:IPR006675; KEGG: dal:Dalk_0653 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: B8FJT0 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_003806358.1" /db_xref="GI:302341829" /db_xref="GeneID:9492835" /translation="MSYLSKIAEKAQKMPPLPTVVARVLELTADPDYSTAELIRAINM DQAVTAHVLRRVNSAFFGLRYRCTSLEQAVPQLGADNVAEIALDAGVAKFFKGSAPIW RHSMATALTARELGKAHGHADLATLHTSALLHDVGMLIIAEFLRDVYEDVQYFVKTEG YSQTMAEREALGIDHAELGARIGQKWKLAPETVEVIALHHEPAKARLARQDTNIVCLA NHIVNTIGYRCLDEEYLVDLPSTVLFEMRLTRRELDGLTAQAAQSLEKSDEILELLP" misc_feature 439944..440720 /locus_tag="Deba_0389" /note="Predicted signal transduction protein [Signal transduction mechanisms]; Region: COG1639" /db_xref="CDD:31826" misc_feature 439968..440534 /locus_tag="Deba_0389" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(440819..443065) /locus_tag="Deba_0390" /db_xref="GeneID:9492836" CDS complement(440819..443065) /locus_tag="Deba_0390" /note="COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963:IPR006656:IPR006657:IPR009010; KEGG: dol:Dole_1621 nitrate reductase; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; SPTR: A9A025 Nitrate reductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain" /codon_start=1 /transl_table=11 /product="molybdopterin dinucleotide-binding region" /protein_id="YP_003806359.1" /db_xref="GI:302341830" /db_xref="GeneID:9492836" /translation="MSDGQWRKTGCVLCAQNCGLEVLVANDRMVKVRPDKDNPRSQGY ACRKGMNVINHQYPADRLTQPLKRVGDKFEPIGWAQAIDEIAAKLRALLDAHGPRCLA YMGASAQGGHMEGAFGLGLIRALGSKYLYSSAGQEFSGSWWVHGRLLGKQYLLPAHDE HNAEVLVAWGWNGMQSHQMPRAPIVLRQFAKDPERLLVSVDPRKSETAAVANLHIALR PGTDALFVKALVAMILERGWQNDDYLRQYVLGWDDARPWFAGFDYRPALELCEVSLDQ AEEFCRLLTTKRWCLHPDLGIYMGRHSALNSYMLSILLCVCGRLCQPGGNVIFGMVMP MGSHADERDPTTWRAVATNLPPVAAGSFPPAAMPEEITSGRPDRLRAVLVSAVNPLRS YPDTSAYERAFGELDLLVVNDIALTETARLAHYVLPCRTYYEAYDGTFFPNNYPEVFF QIRQPIVPPPGQCLEAAQIFTLIADRLGLIPDIPKALHQAADHDDRLTFGLKLMEWAA SEPKALKMMPFVLAKTLGRAWNSAALAGMWGMFMTAPKDFRRNAARVGFAPGPDLGDR VFQALLETPQGLWVGRVDDQDPMAQLKTPSGKIELLIPELARMANDLDAASEAQALKL PDDMPLILQAGRHTENNANTLMRNPQWNQGRRPCTIAVNPADAQKLGFADGQAVRVTT QAGSETGELEISEQIRPGTVIIPHGFGLDYNGQVHGLNVNRLTKNTNRDLVGTPIHRF IPCRLDVA" misc_feature complement(440831..443065) /locus_tag="Deba_0390" /note="Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]; Region: BisC; COG0243" /db_xref="CDD:30592" misc_feature complement(441635..443044) /locus_tag="Deba_0390" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature complement(order(441761..441763,441776..441781, 441815..441817,441824..441832,441902..441910, 442184..442186,442400..442402,442460..442468, 442538..442543,442550..442552,442556..442561, 442667..442675,442679..442681,442922..442924)) /locus_tag="Deba_0390" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:73198" misc_feature complement(441245..>441412) /locus_tag="Deba_0390" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature complement(440822..441187) /locus_tag="Deba_0390" /note="Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum-; Region: MopB_CT; cl09929" /db_xref="CDD:158784" misc_feature complement(order(440840..440845,440900..440902, 440948..440950,441137..441148,441152..441157)) /locus_tag="Deba_0390" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:30307" gene complement(443167..443577) /locus_tag="Deba_0391" /db_xref="GeneID:9492837" CDS complement(443167..443577) /locus_tag="Deba_0391" /note="COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991:IPR000792; KEGG: gme:Gmet_2133 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Q39TR2 Transcriptional regulator, MarR family; PFAM: MarR family" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator" /protein_id="YP_003806360.1" /db_xref="GI:302341831" /db_xref="GeneID:9492837" /translation="MGGHDDCILFLLAKAFQTAHATAKKRLGKYGLTPEQQLVLAAAA DAEGSPVGEIGKKLRLDSATLSGILDRLAEKGLVEKRPDDQDKRVSRVFVADHVHGLL PKMIAERDKVNDLVLAPLTHEERVLFKRMLREIS" misc_feature complement(443173..443529) /locus_tag="Deba_0391" /note="Transcriptional regulators [Transcription]; Region: MarR; COG1846" /db_xref="CDD:32031" misc_feature complement(443203..443505) /locus_tag="Deba_0391" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(443650..447480) /locus_tag="Deba_0392" /db_xref="GeneID:9492838" CDS complement(443650..447480) /locus_tag="Deba_0392" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013656:IPR013767:IPR003661:IPR003594:IPR 001789:IPR011006:IPR009082:IPR000014:IPR001610:IPR004358:I PR005467:IPR000700; KEGG: ppd:Ppro_3150 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver; SPTR: A1ATS3 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003806361.1" /db_xref="GI:302341832" /db_xref="GeneID:9492838" /translation="MRRTHPLILALVTLLGLCCFCAPPALAATPPQPKRVLLIDSYHE GFDWSEELIAGLSETLAQRRDVEFQATFMDTRRHASDDYPRALAELYKIRYANERFDC VVASGQPAFDFIMAHGRELFPGARVLFCGASDLSGLPDGPPNFAAGVTRGQQILPTVQ ALLRLRPQAKEIYFLTGGCRQGRILLEAARRELRGFRGAKLVLLDHDAMSRQEMLERL RGLSRDSLVIYGQWRREDGDRATADFFDQVLDASPAPVFGLFGMGRAPGLVGGMFEDG RALGRQVGGLALTLLAGKAPAGAPLIASTANRFSFDHRQLARWGIDPDDLPPGSRLVN APESFISRYRSLILGVAGFMVMQTMLIVLLVAAYAKRRKTERALAKSEQDLAITLNSI GEAVIAADVNGVVTRLNPVAQRLTGVPAHKAVGAKLDDVCKLQDGQSGERLTDAARQI IAGGLDIFGEHLILRSADGSRRPVAVSGSGLRDGDKKIVGVVMVLRDVSREREAALAL RRSEARYRSLYDSMHEGVALHQLVSDPGGRPYDFVVLDVNPAFERIMNLRRGQVVGMW GSQAMGRHAKTYFERFAQVARSGQPVSFDVDFKELGRSFNVSVFSPGEDLFATILQDI TEAKNARDALARSEEKFQKAFYSHPDSIVISNPHDGVMLEVNNSMLSMLGYQPEEILG VSALRIDLWADPADRARFLATIRAEGRCLAMESALRCKGGRIIPVELSGAMLYLGGQE RLLTIARDVSERAAAAEALLKSEERFQAAFMASPNSIAITRINDGVVIDVNHAFCRLL GYDRADILADRRLLLAAWQNHADRLTLLAAVKEQDEIAEFETAMRAKSGEIKNIIISA RCIDIDGQSCAISVLRDVTQMKLAQQERQRLEEQLRQSQKMEALGTLAGGIAHEFNNL LAAIMGYSELAMARMTTGHACEDEVTQVLAAAERAKGLVRQILTFSRESDYELRPLRA LPVVLEALALLRASLPITVDLRQNLASEAVIMADSTALHQVVMNLCTNAAHALPKDGG FIEVSLADEPDPAGGPGWLRLSVADDGAGVDPLIRGRIFEPFFTTKAPGEGTGLGLSV VHGIVSRLGGQINVTDRPGGGSVFGVRLPAVDAESLQDDSAQPANLRGPERIMLVDDE PGLAQTMGELLGCLGYRVAVFQDSRQALYAFQNDPSAFDLLITDQTMPGLTGEALIRR MLALRPDLPVILCTGYSESLKPDDAARLGVRLFLYKPFSHRELAAAVRQVLDHPAVGQ GDQACILPSAHAGP" misc_feature complement(445987..446316) /locus_tag="Deba_0392" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(445987..446307) /locus_tag="Deba_0392" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(446074..446076,446089..446091, 446179..446190,446227..446229,446245..446247, 446257..446259)) /locus_tag="Deba_0392" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(446047..446049,446053..446055, 446140..446145,446152..446154,446185..446187, 446197..446199)) /locus_tag="Deba_0392" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(445234..445572) /locus_tag="Deba_0392" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(445366..445566) /locus_tag="Deba_0392" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(444133..445185) /locus_tag="Deba_0392" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature complement(444598..444792) /locus_tag="Deba_0392" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(444613..444615,444625..444627, 444634..444636,444646..444648,444655..444657, 444667..444669,444718..444720,444727..444729, 444739..444741,444748..444750,444760..444762, 444772..444774)) /locus_tag="Deba_0392" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(444754..444756) /locus_tag="Deba_0392" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(444133..444453) /locus_tag="Deba_0392" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(444145..444147,444151..444156, 444169..444171,444175..444177,444223..444234, 444301..444306,444310..444312,444316..444318, 444322..444324,444412..444414,444421..444423, 444433..444435)) /locus_tag="Deba_0392" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(444421..444423) /locus_tag="Deba_0392" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(444226..444228,444232..444234, 444304..444306,444310..444312)) /locus_tag="Deba_0392" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(443725..444063) /locus_tag="Deba_0392" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(443716..444060) /locus_tag="Deba_0392" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(443758..443763,443770..443772, 443827..443829,443887..443889,443911..443913, 444046..444051)) /locus_tag="Deba_0392" /note="active site" /db_xref="CDD:29071" misc_feature complement(443911..443913) /locus_tag="Deba_0392" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(443887..443895,443899..443904)) /locus_tag="Deba_0392" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(443755..443763) /locus_tag="Deba_0392" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 447697..448677 /locus_tag="Deba_0393" /db_xref="GeneID:9492839" CDS 447697..448677 /locus_tag="Deba_0393" /note="COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: rpd:RPD_2374 beta-lactamase-like; SPTR: Q137Y3 beta-lactamase-like; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_003806362.1" /db_xref="GI:302341833" /db_xref="GeneID:9492839" /translation="MAVLDRSSIRSLPLGDQLLDIGQCQGLRVLCVSEVGWWDDAKVI NDVVANGGLAASQWTAPWQNDNAAGACNLVEVDYPGGATRRFLLDCGWDPDYIARRLA QTGVDRMIADGQVEFLYMSHEHMDHFFGVEAVLKLRPDLPVIVPETFSQKALDFLAGR GDGGGGSRNDVAHAGPLIRLEVGMIHQLMPGCASVTFDVPIILDVRGEQSLYFLVAEK GLVAMAGCCHQGMRQFLELPGRHLNGAARLYGLYGGMHIAPFGEMAAEQEQAIDWLVE QKPCVVAANHCTGLAAIEKMREKGLPVLGGSGRDGSGSDLYTGNGDWVDF" misc_feature 447913..448593 /locus_tag="Deba_0393" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 448810..449268 /locus_tag="Deba_0394" /db_xref="GeneID:9492840" CDS 448810..449268 /locus_tag="Deba_0394" /note="InterPro IPR011006:IPR001789; KEGG: dal:Dalk_2680 response regulator receiver protein; SMART: response regulator receiver; SPTR: B8FIY1 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806363.1" /db_xref="GI:302341834" /db_xref="GeneID:9492840" /translation="MANGLDVIILDDERQIAEHLKDLTETFYSWGQVHAFSDALEART FCFNRESSLAIFVLDMFLGGQTAFDFIEAVTIHYPMAAEDSVIITGHAGNDIVNMCMA AGVTHLLEKPIKPYAYQFAVRAIANKYLRFAKKLMHDPELAGDVARMALW" misc_feature 448831..449187 /locus_tag="Deba_0394" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(448840..448845,448984..448986,449008..449010, 449074..449076,449131..449133,449140..449145) /locus_tag="Deba_0394" /note="active site" /db_xref="CDD:29071" misc_feature 448984..448986 /locus_tag="Deba_0394" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(448993..448998,449002..449010) /locus_tag="Deba_0394" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 449140..449148 /locus_tag="Deba_0394" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 449451..451076 /locus_tag="Deba_0395" /db_xref="GeneID:9492841" CDS 449451..451076 /locus_tag="Deba_0395" /note="COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterProIPR001732:IPR014026:IPR014027:IPR008927:IPR 016040:IPR017476; KEGG: dal:Dalk_1698 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; SPTR: B8FEJ1 Nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase" /codon_start=1 /transl_table=11 /product="nucleotide sugar dehydrogenase" /protein_id="YP_003806364.1" /db_xref="GI:302341835" /db_xref="GeneID:9492841" /translation="MSNKRQDVSVSPDGEVFILPGEADYQAENQRLAELVAEHRQAGR QIVVVMGVGFVGAVMAAVVADAPGKFVIGMQRPSERSYWKIPLLNRGLAPVTSEDPEV PAMIARCVNEKKTLTASFSYEALALADVVVVDVQCDYSKDELADVTKGSVEMRAFEQS LGVIGQKIQPQCLVLIETTVPPGATEFVAYPIIKKAFRARGVDDEPLLAHSYERVMPG RNYVASIRDFWRVCAGVNEKSRQMVVDFLNDVLNTEKYPLTVLDKPIESETAKIVENS FRATMLAFMDEWSRFAELNGVDIVKVIQAIKARPTHNNIMFPGPGIGGYCLPKDGGLG VWSHHHLMGFQEPIFKMTPMAIDINDNRSLHAAGLVRDGLRNMSRSLAACEVLVCGAS YREDVGDTRYSGSELVVRKLTEMGAIVRVHDPYVKRWWELENQDTYPAPGHSRGRFFR SQQELGHLKVSQDLEQSLQGADAVVLCVRHKQYLELDPDWVVKMAGGPLCVVDCFALL DDAKIRRYFELGCEVKGMGRGHVKRIKDAVRRA" misc_feature 449700..450959 /locus_tag="Deba_0395" /note="nucleotide sugar dehydrogenase; Region: NDP-sugDHase; TIGR03026" /db_xref="CDD:188271" misc_feature 450246..>450440 /locus_tag="Deba_0395" /note="UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984" /db_xref="CDD:144540" misc_feature 450609..450977 /locus_tag="Deba_0395" /note="UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Region: UDPG_MGDP_dh_C; pfam03720" /db_xref="CDD:190725" gene 451093..452016 /locus_tag="Deba_0396" /db_xref="GeneID:9492842" CDS 451093..452016 /locus_tag="Deba_0396" /note="COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: gbm:Gbem_1326 ROK family protein; PFAM: ROK family protein; SPTR: B5EI81 ROK family protein; PFAM: ROK family; TIGRFAM: ROK family protein ( glucokinase)" /codon_start=1 /transl_table=11 /product="ROK family protein" /protein_id="YP_003806365.1" /db_xref="GI:302341836" /db_xref="GeneID:9492842" /translation="MAAWLGVDIGGTNTRVGLVDDGGLIAARGFPTRPAAGVGPWAER LRQEAAELRGPDPLGVGVACAGVLDIKTGVVLHALNLPLFNGQALVGLVSEALGLPAV LENDANLYALGEQSFGAGQGHADLVCLTLGTGVGGGLIMDGRLVRGPLGSAGEIGHIL VVGDGRLCGCGARGCLEAYASATGLRGMLVEALDAGRQTSLGREDSVAAMGAAALAGD ELARELFAVAGMALGRAFADLICTLGLDLIILGGGVSRSWEMMRPAAHEELARRLRVL DPARVRVIAGALGDDAPVLGAAALARQLLAR" misc_feature 451105..451974 /locus_tag="Deba_0396" /note="Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940" /db_xref="CDD:32123" misc_feature 451108..451647 /locus_tag="Deba_0396" /note="FGGY family of carbohydrate kinases, N-terminal domain; Region: FGGY_N; cl09121" /db_xref="CDD:195797" gene 452050..452793 /locus_tag="Deba_0397" /db_xref="GeneID:9492843" CDS 452050..452793 /locus_tag="Deba_0397" /note="InterProIPR011717:IPR013105:IPR019734:IPR011990:IPR 013026; KEGG: dal:Dalk_1963 hypothetical protein; PFAM: hypothetical protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; SPTR: B8FEY2 hypothetical protein; PFAM: Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806366.1" /db_xref="GI:302341837" /db_xref="GeneID:9492843" /translation="MAKDDIKQILKEPDEFITFTDKAVKWARANAKALFIGAAAAVLL IGAGVGLRSYASHRDAQAMDKLGPVMLVYEKYLGGQIDGPALQTMREALGMIADEYSA TPAGRQARLALAQTLYGQGEYDQAAQEFAALGQDSSLEAELLPLALHGLAQSQEALGK YDEAQKSYQRAIQAAGPDLAALYALDRARALAAAGDQAGAIAIYEKALQGGPDDQSRQ TIVAALARLGHTVADARPAADPAQPQPAK" gene complement(452862..453908) /locus_tag="Deba_0398" /db_xref="GeneID:9492844" CDS complement(452862..453908) /locus_tag="Deba_0398" /note="KEGG: dvl:Dvul_1182 hypothetical protein; SPTR: A1VCN6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806367.1" /db_xref="GI:302341838" /db_xref="GeneID:9492844" /translation="MDVEFHYYMTYLVAAAAGYPPADALKIAYASQYVDDNKFQFDID KGQASAYQNYISQTMDILKPKDRLMRIYPIFHFVPGEPMSEACMRLDGCLHMLNTTPG NQNASELLRAAIQTDDLQRIGVATHAFADTWAHQNFVGYFDAFNAMNGPLEKLSPNIG HADAGHLPDLPTAVWQDPRMVSGQVDNRQRFLEAAEAVMTMFMGRIDPAMSPQEASRR LAAMRLELNQAMGKRDDQNVMSDERIERYVALGEKPFFGGQAIPRYDPELWLDMAVNE EVRGLKDRWMGQNLEFLGREIPVVADIYTWRDPGSRQTTDWWRFQEAVKAHQDMAWAM LRTGNMRFMSMQRL" gene complement(454046..454411) /locus_tag="Deba_0399" /db_xref="GeneID:9492845" CDS complement(454046..454411) /locus_tag="Deba_0399" /note="KEGG: hba:Hbal_2364 glycosyl transferase family 39; SPTR: C6XNA0 glycosyl transferase family 39" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806368.1" /db_xref="GI:302341839" /db_xref="GeneID:9492845" /translation="MSKKDVHWFPLQRDGKGRLTIKLFDGRVGDRDEVRFVTIWAGVE QNGDVIIEGFDNGEYGEQSCGIEGIEGAMVMPAAEKDRLILFLLRELFAGNLAAAPIF KDFANANGLECIRRSTCDR" gene 454571..455557 /locus_tag="Deba_0400" /db_xref="GeneID:9492846" CDS 454571..455557 /locus_tag="Deba_0400" /note="InterPro IPR011009:IPR000719; KEGG: dsa:Desal_2316 hypothetical protein; SPTR: C6BWU2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806369.1" /db_xref="GI:302341840" /db_xref="GeneID:9492846" /translation="MNIKKRAEELLGAKIAGPRIVRDTSEFLRIDRGDVLELEGRLFV IKGVMFEGRFGLDDEPKPWVKTGLDLEDGAPKVLKLVFFEEFDLHLGGTVIRRYRSPA KEARVLEIVRDHPLFMHGQTLRDAAGNPVRVIERISGKPLFIDLEPLGLSHRQYTQRH LRGVLAKAVESIRAIKFLHDQAQRHGDIRRDHIFVENDTGLWRWIDFDYNYDQMANPF GLDLFGLGNVLCHLIGAGIPTSQSLAQSDPQALARLDEGDMSLVLPHRVFNLRKVYPH IPEELNRVLMHFTSSTPVFYERVDELLDELLPAMESLPPATEEAQCPTDRPY" gene 455533..456006 /locus_tag="Deba_0401" /db_xref="GeneID:9492847" CDS 455533..456006 /locus_tag="Deba_0401" /note="InterPro IPR006016:IPR014729:IPR006015; KEGG: dba:Dbac_2062 UspA domain protein; PFAM: UspA domain protein; SPTR: C7LNS3 UspA domain protein; PFAM: Universal stress protein family" /codon_start=1 /transl_table=11 /product="UspA domain protein" /protein_id="YP_003806370.1" /db_xref="GI:302341841" /db_xref="GeneID:9492847" /translation="MPHGPTVLIWNRLLLGVDDSEKSLAAVNYVAAVLGGSSNCQIRI VSIHQPLNPDNHPDEAARNDRDARDVAARQAMLKNARATLQEAGIPAENISCELIAAS GQTVGEALMGYQKRHGFGTVVVGRRGLSKTEEFLFGSVSAAAVHQAQDCCIWVVG" misc_feature 455566..456000 /locus_tag="Deba_0401" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature order(455578..455586,455671..455673,455902..455907, 455911..455916,455944..455955) /locus_tag="Deba_0401" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene 456559..459000 /locus_tag="Deba_0402" /db_xref="GeneID:9492848" CDS 456559..459000 /locus_tag="Deba_0402" /note="COGs: COG3920 Signal transduction histidine kinase; InterProIPR013767:IPR013655:IPR011495:IPR003594:IPR 000014:IPR001610:IPR005467:IPR000700; KEGG: ppd:Ppro_3009 hypothetical protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: A1ATD6 Signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase" /protein_id="YP_003806371.1" /db_xref="GI:302341842" /db_xref="GeneID:9492848" /translation="MDWTAPRLVAGLAVIIVLFAAHLHLWALHRRAHLALWTAAWGLA LARYGLLALLPDSLDVETSPAFVAYIVTFAAVCLLLTAGNYLLVGRRPPWRLAALVAA AYLWVLATKPLGLAFEWRTLPPYLSLGLVLFLGGRVLIMARELDRLTRWSAGLALFAA AVALALFAPWVMGNPWFAQWGWVSSGLLMSWVGVSLLMLHFQQQNNLLRRAETDLAQT AGLYRSLADTMAEGMLVFDHDEVITYVNPRLCQIFGRAPQAMLGGHVEALFGPANMDE RSWQAFTALREGRGRDAKPLEIERFARDDGVGLGLRILAGALRDGTGRFRGMVLLVSD VTARLRLDGELAQNRALLQSILEAMDDAVYSVAVADAQSVHFNKAAERLLGFEPGRPA HNAQRPILAIHPDDRHLAQAKLRRLAENGGGQWEYRVVRPDGQTRWVRDRARLARDAQ GRPLRAVSVLVDITERLEDQRQIEERRHFFQALYEQSMNPIVILDDQRRVIEANPAAQ QYFGYGPDEIVGLSTAVAHLDQAMFADFAREAHAQVAASGAWRGEWPLRARDGRLLHV EMAVSVLEQDEQGRPKTLMAIMHDTTQRKLYEQKINAALEEKEVLLREIHHRVKNNMQ VIQSLIWMQASQLDDDGLRRLFSEVERRISAMALIHETLYQSDNLAHLDLQQYIQLLC QGLTGLFEGPAAHIAWDIDCQAIRLDLDKAVSVGLVLNELVTNALKHAFDQRGGTVAI SAGQGVDGRIAIRVADDGRGLPPGQDGAGGRSLGLFLVRGLVQRQLKGELEITTGPGV EFVIRFAAGQAQEQP" misc_feature 457219..457593 /locus_tag="Deba_0402" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 457222..457386 /locus_tag="Deba_0402" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 457678..457938 /locus_tag="Deba_0402" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature 457828..457956 /locus_tag="Deba_0402" /note="Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); Region: PAC; smart00086" /db_xref="CDD:128397" misc_feature 457993..458361 /locus_tag="Deba_0402" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 458023..458325 /locus_tag="Deba_0402" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(458065..458067,458077..458079,458095..458097, 458137..458148,458224..458226,458239..458241) /locus_tag="Deba_0402" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(458125..458127,458140..458142,458164..458166, 458173..458178,458260..458262,458266..458268) /locus_tag="Deba_0402" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 458326..458994 /locus_tag="Deba_0402" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG3920" /db_xref="CDD:33706" misc_feature 458398..458613 /locus_tag="Deba_0402" /note="Histidine kinase; Region: HisKA_2; cl06527" /db_xref="CDD:157259" misc_feature 458710..458970 /locus_tag="Deba_0402" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(458719..458721,458731..458733,458740..458742, 458818..458820,458824..458826,458830..458832, 458836..458841,458872..458883,458932..458934, 458938..458940,458947..458952,458956..458958) /locus_tag="Deba_0402" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 458731..458733 /locus_tag="Deba_0402" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(458830..458832,458836..458838,458872..458874, 458878..458880) /locus_tag="Deba_0402" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 458997..462470 /locus_tag="Deba_0403" /db_xref="GeneID:9492849" CDS 458997..462470 /locus_tag="Deba_0403" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013655:IPR013767:IPR003661:IPR 003594:IPR011006:IPR009082:IPR000014:IPR001610:IPR004358:I PR005467:IPR000700; KEGG: sfu:Sfum_3740 PAS/PAC sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: A0LPQ8 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor hybrid histidine kinase" /protein_id="YP_003806372.1" /db_xref="GI:302341843" /db_xref="GeneID:9492849" /translation="MTPPAKASLLIVEDEFIVAQHLRASLESMGYEVAGLADSAAEAV ELAERLRPDLVLMDIFLAGPSDGIEAAMTIRRRLGRPVVFLTAQLDDDIIPRAAAAQP HGYLNKPFKIKEVQAVVETALHKAAMEAELAAGQERLRLILDATSDGAWDCDLRADRV FLSEKGLALLGRDGQDPHDLAAWLGLVHPDDLPSLEAVAQALRQDAPTLDVQLRLLGA DGQWRFLHCRGRAVAWRADGAAGRVVGTLTDITAQKADQAELAEARERFMHLARFTSD ALLLIHDGKIVHFNPAHGQSLGYGAADLEGVEFTRLLAPHDRRRVGGYHRRRLAGESA PEEFVADIVDVDGQIKPMSLRSQLARHQGRQLVLTAMRPLKGHDAETADSNGLTGAVL DNLPVGLAVFALDSGLCIYMNDNYGRVVGWPKAELPSVSKILGRLFPDREERRKRLAD VRPGPASDGRQKRQWNNIAVQTRDHGRRYISTMSIAVPDHGVIISTVWDVDSQRRAER ALAASEEKYRQLVENAGEAIVIVQDGAVRLANPSAARFFGLPPAELAGQNIAGLIHPD DRAKALALYAQHQSAAAPPAAGPHRMLRRDLGPGWVESRVAPVEWEGRPAVLACLTDV TEAVQAQESLKERNETLQAMINASPLAVIGLNHRGEVVLWSGAAQAMFGWDAEEVLGR FNPLAAPQERAEFERHLARARDGRQALHLEMTCKAKDGRPVDMTVHVAPVRGSDGRAG SLLCLVEDVSERRRQERVWARLEEHLSQNRRLEAVGVLASGVAHEFNNILAAIIGYGE LAKEDLQEGRIDSPLHFLDNQMKAAERGRELVRQILAFSRHGSGRRRRVDLAPVLAQQ VRLLRAVVPANVALRAELCEGPLSAEADPAQIQQVLLNLTTNAVEAFDGGDGSIIFQT DVAAFDEADAAAPPGLAPGRYLRLRVDDDGPGMPQGVLERACEPFYTTKKQNRNAGLG LAEAHGVISAHGGRLILHSRLERGSRVEAFIPLCDKPLPAATEPGPAPDQGCARILFV DDERSLVEIAQRLLTNMGHRVEAFGDARLALQAFVDDPQAYDLLISDQSMPHLSGLEL AARVTALRPGLPVIICTGHGQQLTPQSLARAGVGQLLYKPVDKRELAAAIGRAMAGRA APLSTTGPLPS" misc_feature 459021..459356 /locus_tag="Deba_0403" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 459024..459365 /locus_tag="Deba_0403" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(459033..459038,459168..459170,459195..459197, 459252..459254,459309..459311,459318..459323) /locus_tag="Deba_0403" /note="active site" /db_xref="CDD:29071" misc_feature 459168..459170 /locus_tag="Deba_0403" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(459177..459182,459189..459197) /locus_tag="Deba_0403" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 459318..459326 /locus_tag="Deba_0403" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 459432..459746 /locus_tag="Deba_0403" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature 459471..459737 /locus_tag="Deba_0403" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature order(459480..459482,459492..459494,459510..459512, 459552..459563,459639..459641,459654..459656) /locus_tag="Deba_0403" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(459540..459542,459555..459557,459579..459581, 459588..459593,459675..459677,459681..459683) /locus_tag="Deba_0403" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 459789..460109 /locus_tag="Deba_0403" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 460542..460898 /locus_tag="Deba_0403" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 460578..460868 /locus_tag="Deba_0403" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(460611..460613,460623..460625,460641..460643, 460680..460691,460770..460772,460785..460787) /locus_tag="Deba_0403" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(460671..460673,460683..460685,460707..460709, 460716..460721,460806..460808,460812..460814) /locus_tag="Deba_0403" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 460920..461972 /locus_tag="Deba_0403" /note="Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852" /db_xref="CDD:33642" misc_feature 460938..461243 /locus_tag="Deba_0403" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(460986..460988,460998..461000,461016..461018, 461052..461063,461139..461141,461154..461156) /locus_tag="Deba_0403" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(461043..461045,461055..461057,461079..461081, 461088..461093,461175..461177,461181..461183) /locus_tag="Deba_0403" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 461310..461510 /locus_tag="Deba_0403" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(461328..461330,461340..461342,461352..461354, 461361..461363,461373..461375,461382..461384, 461439..461441,461451..461453,461460..461462, 461472..461474,461481..461483,461493..461495) /locus_tag="Deba_0403" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 461346..461348 /locus_tag="Deba_0403" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 461658..461996 /locus_tag="Deba_0403" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(461676..461678,461688..461690,461697..461699, 461814..461816,461820..461822,461826..461828, 461832..461837,461904..461915,461961..461963, 461967..461969,461982..461987,461991..461993) /locus_tag="Deba_0403" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 461688..461690 /locus_tag="Deba_0403" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(461826..461828,461832..461834,461904..461906, 461910..461912) /locus_tag="Deba_0403" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 462075..462398 /locus_tag="Deba_0403" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 462078..462398 /locus_tag="Deba_0403" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(462087..462092,462225..462227,462249..462251, 462309..462311,462366..462368,462375..462380) /locus_tag="Deba_0403" /note="active site" /db_xref="CDD:29071" misc_feature 462225..462227 /locus_tag="Deba_0403" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(462234..462239,462243..462251) /locus_tag="Deba_0403" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 462375..462383 /locus_tag="Deba_0403" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(462442..462981) /locus_tag="Deba_0404" /db_xref="GeneID:9492850" CDS complement(462442..462981) /locus_tag="Deba_0404" /note="KEGG: dal:Dalk_0156 hypothetical protein; SPTR: B8FMJ9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806373.1" /db_xref="GI:302341844" /db_xref="GeneID:9492850" /translation="MPLLKIVPVDQAQGEVKANYEMFTKTIGTVPQPFQMWSASPALQ SINKQIIGYYMKHPTLKPALMALIRMLVSEELGFDYCISFNAQILKTVGVISDDQLGA ILADPTTAPLDEKDKAMLLFVLKACKSPEAVEQADVDGLRALGWADSDILDAAAQGAS MIQGGVLFRAFKMAEGQSC" misc_feature complement(462517..462978) /locus_tag="Deba_0404" /note="uncharacterized peroxidase-related enzyme; Region: peroxid_rel; TIGR01926" /db_xref="CDD:130981" gene 463164..463943 /locus_tag="Deba_0405" /db_xref="GeneID:9492851" CDS 463164..463943 /locus_tag="Deba_0405" /note="COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325:IPR000169; KEGG: dal:Dalk_1541 cyclase family protein; PFAM: cyclase family protein; SPTR: B8FAE3 Cyclase family protein; PFAM: Putative cyclase" /codon_start=1 /transl_table=11 /product="cyclase family protein" /protein_id="YP_003806374.1" /db_xref="GI:302341845" /db_xref="GeneID:9492851" /translation="MARRIIDLAVCLEPDLPSDPPMMIPRIDYFDHQAGAVQMQEFFP GLRPEDLPGGLGWAVESVSLGTHSGTHLDAPFHYHPTMDGGRPALTIDQVPLEWCLAD GVLLDFSDRPAGYGLSAADVAAELERIGYKLKPMDIVLLRSGAAAAWGRPEYLVSGCG MSAEATNYILDHGVKVVGTDGWSWDRPLPFQAADFARAKDASLIWEAHFAGIQRGYCH MEKLANLAAIPRPFGFTVACFPIKIKNASAGWCRPVAIVED" misc_feature 463176..463724 /locus_tag="Deba_0405" /note="Putative cyclase; Region: Cyclase; cl00814" /db_xref="CDD:193946" gene 464025..464831 /locus_tag="Deba_0406" /db_xref="GeneID:9492852" CDS 464025..464831 /locus_tag="Deba_0406" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_0098 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: B8FKJ3 methyltransferase type 11; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003806375.1" /db_xref="GI:302341846" /db_xref="GeneID:9492852" /translation="MSQPAYVHGYSAVEAARLADQAQTLAAILHEGVRYPAGAMVLEA GCGVGAQTARLAAASPEARFVSVDISADSLAQARRAVAEAGLGNVTFMRANLLNPPFA DESFDHVFVCFVLEHLAEPLAVLRRLRRLLRPGGQITVIEGDHGSCYFHPESAEAMAV WRCLIQAQAAMGGDSLIGRRLHPLLVAAGFNDVRVRPAPIYADDSLPHMVEGFTRRTI MAMVAGVEGQAKAMGLIDDDAWRRGMTALGRAAEPGGVFNYSFFRATAYR" misc_feature 464133..464807 /locus_tag="Deba_0406" /note="hypothetical protein; Provisional; Region: PRK08317" /db_xref="CDD:181382" misc_feature 464145..464447 /locus_tag="Deba_0406" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(464154..464174,464226..464231,464304..464312, 464358..464360) /locus_tag="Deba_0406" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 464859..465821 /locus_tag="Deba_0407" /db_xref="GeneID:9492853" CDS 464859..465821 /locus_tag="Deba_0407" /note="COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: glo:Glov_0554 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; SPTR: B3E370 peptidase M48 Ste24p; PFAM: peptidase family M48" /codon_start=1 /transl_table=11 /product="peptidase M48 Ste24p" /protein_id="YP_003806376.1" /db_xref="GI:302341847" /db_xref="GeneID:9492853" /translation="MNTLKTALFLGLLTGVLVAIGGLVGGRTGMIVALVLAGAMNFFS YWYSDKIVLRAYRAQVLERHEAPALYDMVDELRQNAGLPMPRVALIPDPTPNAFATGR DPAHAVVAVTQGIVDLLSPRELRGVLAHELGHVQDRDILVSSVAATVAGAVMVLADMA RWAMIFGGGRGDEEGEGGGGIVGLLVMSILAPLAAMLIQMAISRGREYLADSEGAQIC GDPEALASALAKLQNANQRQPMESARPQTAHMFIVNPLAGRSMASLFSTHPPMEERIA RLRAMAPGRPAAPPQRPVSFSPPPPPPPPGPAADGGRRGKIDWS" misc_feature 464859..465683 /locus_tag="Deba_0407" /note="Peptidase family M48; Region: Peptidase_M48; cl12018" /db_xref="CDD:187163" gene 465828..467171 /locus_tag="Deba_0408" /db_xref="GeneID:9492854" CDS 465828..467171 /locus_tag="Deba_0408" /note="COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR009003:IPR001940; KEGG: dde:Dde_3776 PDZ/DHR/GLGF; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Q30US8 PDZ/DHR/GLGF; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family" /codon_start=1 /transl_table=11 /product="peptidase S1 and S6 chymotrypsin/Hap" /protein_id="YP_003806377.1" /db_xref="GI:302341848" /db_xref="GeneID:9492854" /translation="MSTSKRFGAALGLVLTFLLCAVWPAPAQERAQSPVVLAVKKAGP AVVNISTKGVTRRAFSTGDPMLDRFFADMFQPMVRESTTLGSGVIVDGKRGLIVTNNH VVENAERIKVQLADRRVFAARLLGQDAASDLALLGVEGAADLPQAELAAADDLLIGET VVAIGNPFGLQHTVTAGVLSAVGRRVRVGPNQWMTGLLQTDASINPGNSGGPLVNADG RVIGVNTAIFQQAQGIGFAVPAGRVRRVMAALLRGGPPPPLWLGLEAQDLTPRLAQAF GVELEGGLLVLGARPGSPAQGAGLTRGAIIVAIDGQPVESAAHFEELLDQAEPGRPLA LELIENGRRTTRQAAPVAIGDQEAQDLAWRRLGLRVTASGAGKNAPVIIRDVRPASPA EAAGLRPGDLIHDVCGRPTASVRQFAHAAARCRFEAAPILTAQRGRLRQALQLSI" misc_feature 465942..467075 /locus_tag="Deba_0408" /note="periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037" /db_xref="CDD:162670" misc_feature 466059..466544 /locus_tag="Deba_0408" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" misc_feature 466617..466862 /locus_tag="Deba_0408" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature order(466620..466622,466773..466778,466785..466790) /locus_tag="Deba_0408" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" misc_feature 466923..>467075 /locus_tag="Deba_0408" /note="PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated...; Region: PDZ; cl00117" /db_xref="CDD:193662" gene complement(467203..467406) /locus_tag="Deba_0409" /db_xref="GeneID:9492855" CDS complement(467203..467406) /locus_tag="Deba_0409" /note="KEGG: fps:FP1649 hypothetical protein; SPTR: A6H043 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806378.1" /db_xref="GI:302341849" /db_xref="GeneID:9492855" /translation="MVDARLAIHKRVGVFVLVNGACLAINLLTGARCLWFWWAPLGTG VGLVGHAWRRKVEREVIKRGQGR" gene complement(467471..467860) /locus_tag="Deba_0410" /db_xref="GeneID:9492856" CDS complement(467471..467860) /locus_tag="Deba_0410" /note="COGs: COG0509 glycine cleavage system H protein (lipoate-binding); InterPro IPR002930:IPR011053:IPR017453:IPR003016; KEGG: ttr:Tter_1497 glycine cleavage system H protein; PFAM: glycine cleavage H-protein; SPTR: A3TKX5 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein" /codon_start=1 /transl_table=11 /product="glycine cleavage system H protein" /protein_id="YP_003806379.1" /db_xref="GI:302341850" /db_xref="GeneID:9492856" /translation="MNKLNFPPDLLYHPEHLWVRRLEDGLALIGVSDFAQDQLGKVVY IDLPQPDDAVEAGREMGAIESAKSVSDLIAPLSGVVVEVNAALDQDPSPLNADPYGQG WIAKIRPSQPEELDALLPVHEYLRRIQ" misc_feature complement(467540..467827) /locus_tag="Deba_0410" /note="Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-...; Region: GCS_H; cd06848" /db_xref="CDD:133457" misc_feature complement(467660..467662) /locus_tag="Deba_0410" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133457" gene complement(467857..468642) /locus_tag="Deba_0411" /db_xref="GeneID:9492857" CDS complement(467857..468642) /locus_tag="Deba_0411" /note="COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: dol:Dole_1189 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: A8ZXN7 Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase" /codon_start=1 /transl_table=11 /product="prolipoprotein diacylglyceryl transferase" /protein_id="YP_003806380.1" /db_xref="GI:302341851" /db_xref="GeneID:9492857" /translation="MRPILLQLGPITLYGYGLMVALGTAVAMWVGVRFVRRDGLDLDA CVNVGVATALAGLLGARAFYYLIEWESLSHLPWYYFFFFWEGGLVFYGCLAVGLPTAI VLARHYHLPLPRLLDIGAPALAIGQAIGRVGCFLAGCCHGLPWPGGACAVVFTDPHSL APRGVELHPTQLYTSAALLLIFGALIWLWPRRRFYGQIFFSYAVLHAVARIIIEQFRG DFRGEPICGAVTPTAFFAGCLALAGVVALIWLWRKQGRHRSEQ" misc_feature complement(467986..468642) /locus_tag="Deba_0411" /note="Prolipoprotein diacylglyceryl transferase; Region: LGT; cl00478" /db_xref="CDD:193836" gene complement(468642..469109) /locus_tag="Deba_0412" /db_xref="GeneID:9492858" CDS complement(468642..469109) /locus_tag="Deba_0412" /note="COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: mpt:Mpe_A3047 signal peptidase II; PFAM: peptidase A8 signal peptidase II; SPTR: A2SKB1 Lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase" /codon_start=1 /transl_table=11 /product="lipoprotein signal peptidase" /protein_id="YP_003806381.1" /db_xref="GI:302341852" /db_xref="GeneID:9492858" /translation="MTGKLGRFLLIALAVAGLDQLTKAMIVAWLPAGGLELIPGYLDF VLVHNRGASFGVFSQMPGGRWLLVAVSVAALGLCLWLAVGPWGRGRLGFWALALICGG ALGNLIDRLRLGQVVDFILAHWQQYHWPAFNVADSAITIGGVLLGWLLLRGKI" misc_feature complement(468687..469109) /locus_tag="Deba_0412" /note="Signal peptidase (SPase) II; Region: Peptidase_A8; cl00458" /db_xref="CDD:187899" gene complement(469115..471928) /locus_tag="Deba_0413" /db_xref="GeneID:9492859" CDS complement(469115..471928) /locus_tag="Deba_0413" /EC_number="6.1.1.5" /note="COGs: COG0060 Isoleucyl-tRNA synthetase; InterProIPR002300:IPR013155:IPR010663:IPR009080:IPR 009008:IPR014729:IPR015905:IPR002301:IPR001412; KEGG: sfu:Sfum_0122 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; zinc finger Fpg domain protein; SPTR: A0LEH3 Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Zinc finger found in FPG and IleRS; TIGRFAM: isoleucyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="isoleucyl-tRNA synthetase" /protein_id="YP_003806382.1" /db_xref="GI:302341853" /db_xref="GeneID:9492859" /translation="MDYKNTLNLPQTSFPMKAGLPQREPEMLARWDEMGLYGLLRQQS AGRPKFILHDGPPYANGNIHMGTAFNKVLKDFIVKSRQMAGFDAVYVPGWDCHGLPIE YQVTKNLGDEACHKSQIDIRRRCRKYAEKYIDIQRDEFVRLGVLGDWPDPYLTMKYSY EAAIAREFCRIYAGGGVYRSKKPVHWCMDCRTALAEAEVEYHDHKSKSIFVAFRLVDD LGPKYPELAGRDVSLVIWTTTPWTIPANLAVAANPELEYAAVEHEGKVYIMAARLAPL NMEAFGFQGWRTLCAVDPLDLEGKKAKHPLYDRLSVGVLADYVTLEAGTGLVHTAPGH GREDYDTGRRYGLEPFAPVDDDGRFTAEAAPFEGQNVFEANEAIIAALREAGALLAVE EISHSYPCCWRCKQPVIFRATPQWFISMEENDLRARSLKAIQNDVRWVPAWGRERIHG MIENRPDWCISRQRSWGVPITVFRCQGCGETVLTPEMAQKVVAAFEAEGADAWFTRSV AEILGELAVCPICGGHDLAKDNDILDVWFDSGCSQAAVLEAHPQLTWPADMYLEGSDQ HRGWFHSSLLCAMATRGAAPYRQVLTHGFVVDGDGRKMSKSLGNVIAPQKVIDQYGAE ILRLWVAAEDYTVDIRLSNDILKQLAEAYRRIRNTMRFMLGNLHDFDPQAHAVAPDQM GQMDRLMLHRLQELIGRVRKGYEDFAFHACFHGLHNYCVVDLSGFYLDVLKDRLYTCA PDDPARRAAQTVLYHTLSAMVRLAAPILSFTAEEVWDYLPGAKDMGQSVHMAALPQVE AALLDAELAGRWARLLELRGAVNKAMDLARKDKIVGNSLEAKLTLAAEGDLADFIAEN AAVLQEITMVSQLELAPALANPTLKSEETPGLLIGVTPSGHQKCARCWTRLESVGQLP DLPELCERCAAVVRQVGLAADGA" misc_feature complement(469145..471928) /locus_tag="Deba_0413" /note="isoleucyl-tRNA synthetase; Reviewed; Region: ileS; PRK05743" /db_xref="CDD:180231" misc_feature complement(<471371..471787) /locus_tag="Deba_0413" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(471728..471739) /locus_tag="Deba_0413" /note="active site" /db_xref="CDD:173912" misc_feature complement(471728..471739) /locus_tag="Deba_0413" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature complement(order(471728..471730,471737..471739)) /locus_tag="Deba_0413" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(470006..>470710) /locus_tag="Deba_0413" /note="catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818" /db_xref="CDD:173909" misc_feature complement(order(470015..470017,470111..470128, 470138..470152,470219..470221,470225..470227, 470231..470245,470312..470314,470321..470323, 470588..470590)) /locus_tag="Deba_0413" /note="active site" /db_xref="CDD:173909" misc_feature complement(470108..470122) /locus_tag="Deba_0413" /note="KMSKS motif; other site" /db_xref="CDD:173909" misc_feature complement(469466..470008) /locus_tag="Deba_0413" /note="Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_BEm; cd07960" /db_xref="CDD:153414" misc_feature complement(order(469466..469468,469475..469477, 469730..469732,469739..469741,469751..469753, 469766..469768,469775..469780,469787..469792, 469799..469801,469943..469948,469955..469957, 469964..469966,469976..469978,469985..469987, 469997..469999)) /locus_tag="Deba_0413" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153414" misc_feature complement(order(469946..469948,469955..469957)) /locus_tag="Deba_0413" /note="anticodon binding site; other site" /db_xref="CDD:153414" misc_feature complement(469151..469237) /locus_tag="Deba_0413" /note="Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827" /db_xref="CDD:148438" gene complement(472046..473176) /locus_tag="Deba_0414" /db_xref="GeneID:9492860" CDS complement(472046..473176) /locus_tag="Deba_0414" /note="COGs: COG2006 conserved hypothetical protein; InterPro IPR007160:IPR001450:IPR017896:IPR017900; KEGG: gsu:GSU0494 iron-sulfur cluster-binding protein; PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1TQG7 Uncharacterized conserved protein; PFAM: 4Fe-4S binding domain; Domain of unknown function (DUF362)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806383.1" /db_xref="GI:302341854" /db_xref="GeneID:9492860" /translation="MADVAVKACQGYDQPDLGRAVAQAVELCGGMGRFVRPGQNVLLK PNLLGAYEPDRRVTTDPAVVVAVGRLVLDHGGRPIIGDSPAIDPFGRAAAKAGLAQAA RQLEAPLVELLEPTPTPTPPTAIRRRLDLARAAVQADVIINLPKLKTHCMMLLTMGVK NLFGAVVAQRKSEWHLAVGQSRLAFADLLLDIQQTLRPALTILDGVWAMEGRGPSNGA PRRTGFIAASADALALDVAVCPLLGVEPGRYPIFQAAVARGLIDPAQPPRLLGDDPAL VATRDFQTPELEPTTMLPPLLARLLGRRLIARPVQEPGLCRACGKCAAICPAGCLRLE GRRASFDHDRCIRCYCCHEVCPVGAITFKRGLVAGLLERLGR" misc_feature complement(<472922..473170) /locus_tag="Deba_0414" /note="Uncharacterized conserved protein [Function unknown]; Region: COG2006" /db_xref="CDD:32189" misc_feature complement(472367..>472756) /locus_tag="Deba_0414" /note="Uncharacterized conserved protein [Function unknown]; Region: COG2006" /db_xref="CDD:32189" misc_feature complement(<472091..>472249) /locus_tag="Deba_0414" /note="Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Region: NuoI; COG1143" /db_xref="CDD:31338" misc_feature complement(472094..472159) /locus_tag="Deba_0414" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene complement(473187..473951) /locus_tag="Deba_0415" /db_xref="GeneID:9492861" CDS complement(473187..473951) /locus_tag="Deba_0415" /note="InterPro IPR018392:IPR002482; KEGG: mpt:Mpe_A2160 transmembrane protein; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: A2SHS7 Putative transmembrane protein; PFAM: LysM domain" /codon_start=1 /transl_table=11 /product="peptidoglycan-binding lysin domain protein" /protein_id="YP_003806384.1" /db_xref="GI:302341855" /db_xref="GeneID:9492861" /translation="MLSNGRRGPRFESDADDNIQPRGRAIDDYAPPNSAKPSALAMLS LIISMLALGLAVWALAVPPDPLITPPATPGQVMGQAGGGDRVSRLENDMQRALLHLVT MEERLKKLQARLTAIAPDQAAAEPAIDPLEPIATALAPLSAAEPQPAASPATVSPAPA APAPTPAPLEKPTPAPTPKPAPTAQPTPKPTAKATARPSVPASFTAKHIYKVKPGDNL YSVARAFGVKKEDLCAWNGLDKDTLIKVDQSLVIYK" misc_feature complement(473196..473330) /locus_tag="Deba_0415" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature complement(order(473280..473282,473289..473291, 473304..473306,473313..473315,473322..473324)) /locus_tag="Deba_0415" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" gene 474100..475731 /locus_tag="Deba_0416" /db_xref="GeneID:9492862" CDS 474100..475731 /locus_tag="Deba_0416" /note="COGs: COG1639 signal transduction protein; InterPro IPR013976:IPR003661:IPR003594:IPR005467; KEGG: aeh:Mlg_1873 diguanylate cyclase; PFAM: Metal-dependent hydrolase HDOD; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: Q0A7H0 Diguanylate cyclase; PFAM: HDOD domain; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_003806385.1" /db_xref="GI:302341856" /db_xref="GeneID:9492862" /translation="MEQAARELLERVLGRDNAPTLSPLAVKLVKLASDDQADMRDLAR IIEQDPGLTTRLLRLVNSPVFRASADEITSVQRAVIFLGLREVRVMALGIGLRQSLPL KKNDPLYYRYWRASLHRALLARLLAARLGVKQADELFVAGLLADLGLPLLLAVLSPGE MEGFPGVEASLPLQLYWEQRRFGLDHRQVGAAAMRRWGLPGLLIRCQEPVLGDGAEGA SVEQKVVDFARRGVEALFGVECGIHQLHALAQSWFGLGDETLNKLVGQALGQAAEAAA VMDVELDQQADLLEVMEKANQALGRLSGQMEPHVKRIVNGGGEARRLQEETLVNTLEA VAHEIRNLLMSVGGFARRLAKLLEGGGELQHYAQVILDEAGRLDGVLAEMSSLVAPFK PNIEPLSINELVEQVCGRAPGAGLALAMHLPGQSINIAADRRGLEKTLELMLAYGSHL SRHGGDGTVHVHISANQDEVVITVFGAGEAPAGEGPLADRSFGPELGLAKARRIVEAH GGRLEVEAGPKGAGFVLGAHLPAERPAEADNRLAV" misc_feature 474154..474714 /locus_tag="Deba_0416" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature <475054..475698 /locus_tag="Deba_0416" /note="sensor protein ZraS; Provisional; Region: PRK10364" /db_xref="CDD:182411" misc_feature 475102..475251 /locus_tag="Deba_0416" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(475102..475104,475114..475116,475123..475125, 475135..475137,475144..475146,475195..475197, 475207..475209,475216..475218,475228..475230, 475237..475239,475249..475251) /locus_tag="Deba_0416" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 475108..475110 /locus_tag="Deba_0416" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" gene 475926..476099 /locus_tag="Deba_0417" /db_xref="GeneID:9492863" CDS 475926..476099 /locus_tag="Deba_0417" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806386.1" /db_xref="GI:302341857" /db_xref="GeneID:9492863" /translation="MALPVRPTPRLGKEASRDFCARVDRDLQIKAAPPPTPDIDKVIA RIVADANDSKKQG" gene 476104..476945 /locus_tag="Deba_0418" /pseudo /db_xref="GeneID:9492864" gene 477052..478020 /locus_tag="Deba_0419" /db_xref="GeneID:9492865" CDS 477052..478020 /locus_tag="Deba_0419" /note="COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: nth:Nther_1582 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B2A4I0 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_003806387.1" /db_xref="GI:302341858" /db_xref="GeneID:9492865" /translation="MKRILVTGGAGSIGSFVCEYLIDRGHEVIALDNGSSRKVEHLFE TGRFKFVQDSIMNKDVLERQVQRSDIVIHLAAIADPKRYVTEPLNVLNINVKGSIQLL ELCAAKGAKVIFASTSEVPGRNTQVPFNEEADRVLGPPSINRWCYSTGKALIEHFLYA YRQQENLPFVIMRFFNVYGPRCDDLGQGRVIPIFMEKLLGGQPLTIHGDGKQTRCFTF IEDACQAVVELALNPAAEGLCFNVGNDRETSILELAQTLIKVGQFESDIVFKPHVEVF GKSYEDIPRRIPDVRRIKSVINWEASTSLEDGLRKTIDFYRDWAKQ" misc_feature 477052..478005 /locus_tag="Deba_0419" /note="NAD-dependent epimerase/dehydratase family protein; Provisional; Region: PRK11908" /db_xref="CDD:183375" misc_feature 477058..477999 /locus_tag="Deba_0419" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(477073..477075,477079..477084,477088..477090, 477145..477153,477271..477279,477394..477402, 477490..477492,477502..477504,477571..477582) /locus_tag="Deba_0419" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(477331..477333,477400..477402,477490..477492, 477502..477504) /locus_tag="Deba_0419" /note="active site" /db_xref="CDD:187535" gene 478177..478659 /locus_tag="Deba_0420" /db_xref="GeneID:9492866" CDS 478177..478659 /locus_tag="Deba_0420" /note="COGs: COG2606 conserved hypothetical protein; InterPro IPR007214:IPR004369; KEGG: gsu:GSU3088 YbaK/EbsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: Q748B9 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein" /codon_start=1 /transl_table=11 /product="ybaK/ebsC protein" /protein_id="YP_003806388.1" /db_xref="GI:302341859" /db_xref="GeneID:9492866" /translation="MAKQSIPATQAVRALRQAGVAFELHSYRYEEKGGTAVAARELGW DEHAVIKTLVFVDDQRRPLIVLMHGDRQVSAKNLARAIGAKAVSPADPALANRLTGYQ VGGISPFGQKAVLPVYVEKTILDLPRILINAGRRGLLAEVDPAVIGQMLTAAPVEAAV " misc_feature 478201..478647 /locus_tag="Deba_0420" /note="This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS); Region: YbaK_deacylase; cd00002" /db_xref="CDD:88582" misc_feature order(478327..478329,478486..478491,478570..478572) /locus_tag="Deba_0420" /note="putative deacylase active site [active]" /db_xref="CDD:88582" gene complement(478679..480376) /locus_tag="Deba_0421" /db_xref="GeneID:9492867" CDS complement(478679..480376) /locus_tag="Deba_0421" /note="KEGG: dal:Dalk_4656 integrin-like repeat-containing protein; SPTR: B8FNQ3 Integrin-like repeat-containing protein" /codon_start=1 /transl_table=11 /product="integrin-like repeat-containing protein" /protein_id="YP_003806389.1" /db_xref="GI:302341860" /db_xref="GeneID:9492867" /translation="MAASAGGRPVWRLVAAMTILSALLTAGAVRAEVSRVVILPFTAN APKDISYLTKGIRDMLASRLAWEGRVQVVEPDMVAPHLAGLKQPYNDQAARAVGEKVH AQVVVFGAVTMLGQALSIDARVVRVGQGAPALTAFVQAPKEDEVIPQINLFAQRINAE IFRRPDAVEAAKRAESGKQGGVGGSTGRLTAARDEGEDDSHMSPLNPLFMKQLYGVQS DRFWRSPRINGVVNAVSAADVDMDGQIELIALLPKSLRIYRLGGEYFQLISELNNGPI GTYQYVDAGDFNGDGRPEIYVSCRNGNSMSSFVLSYEKGAFTYLAKGVPYHLRMQKNP WGQGVMVFGQKTAPNAPFYGPIYKMKWQDGDLVSDDEVTNLPDMTTIYNFLLADLSGS GGRPMSMISDNTYHLRVYNRSGEQLWMSDEQYNASSQFTYYKEISGGSGEDDVWYFHT RILEADLDGDNKPEAVVVRNSDPTGMLLGRMRMFNRGQLYSLSWNGMSMVENWRTPRI SGYVSDYAIADVANSGQPALILAYNVKDLGGLIEKGFSYVVAYTIKPKAERASGEGD" gene 480613..480996 /locus_tag="Deba_0422" /db_xref="GeneID:9492868" CDS 480613..480996 /locus_tag="Deba_0422" /note="KEGG: dal:Dalk_1095 hypothetical protein; SPTR: B8F952 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806390.1" /db_xref="GI:302341861" /db_xref="GeneID:9492868" /translation="MECPHCQKELPAVECPACGQKTLTGANFCHDCGHLLPPAAGEGR KLLTCSTCGQHLLPEAGYCHVCGQPAHDHAHDHGEDGEGQGLDFSKRVACSDGACIGI IGPDGKCTECGKPFDAAAAPQPEEN" misc_feature <480616..>480711 /locus_tag="Deba_0422" /note="DNA polymerase II large subunit; Validated; Region: PRK04023" /db_xref="CDD:179714" gene 480998..481366 /locus_tag="Deba_0423" /db_xref="GeneID:9492869" CDS 480998..481366 /locus_tag="Deba_0423" /note="COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: dol:Dole_1493 6-pyruvoyl tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: A8ZZE4 Putative uncharacterized protein; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein" /codon_start=1 /transl_table=11 /product="6-pyruvoyl tetrahydropterin synthase and hypothetical protein" /protein_id="YP_003806391.1" /db_xref="GI:302341862" /db_xref="GeneID:9492869" /translation="MFELMVTGRFAAAHSLRNFNGRCEALHGHNWKVEVVVYGDKLDK ADLLMDFGELKKLMNQALDNLDHRHLNEVPPFDRLNPSSEQIARHIAQQVALGLPEHV RVRRVSAWESDDSRASYLPD" misc_feature 481025..481354 /locus_tag="Deba_0423" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" misc_feature order(481076..481078,481082..481084,481328..481330, 481346..481348) /locus_tag="Deba_0423" /note="active site" /db_xref="CDD:29764" gene 481739..482944 /locus_tag="Deba_0424" /db_xref="GeneID:9492870" CDS 481739..482944 /locus_tag="Deba_0424" /EC_number="2.7.7.4" /note="COGs: COG2046 ATP sulfurylase (sulfate adenylyltransferase); InterPro IPR002650:IPR015947:IPR014729; KEGG: abo:ABO_0730 sulfate adenylyltransferase; PFAM: ATP-sulfurylase; PRIAM: Sulfate adenylyltransferase; SPTR: B9ZMM6 Sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase" /protein_id="YP_003806392.1" /db_xref="GI:302341863" /db_xref="GeneID:9492870" /translation="MALIKPLGGGELKPLYVMDDAKRAALVKEAEGLPSVVVSSAAAG NAVMLGGGYFTPLTGYMNVADTMGVAENLRMTNGQFWPTPVVNMLSDVSAIKGAKRIA LKDPNVAGNPVIAIQDVEAIEEFTDEQMKTITQKVYRTQDMEHPGVAAFNSVGKFVVS GPIQVLNYSYFRTEFPETFRTAYEIRKEMEDLGWSKVVAFQTRNPMHRAHEELCRMAY EQLGADGVLIHMLLGKLKKGDIPADVRDACIRKMVELYFPPNTVLVTGYGFDMLYAGP REAVLHAAFRQNTGCTHLIVGRDHAGVGDYYGGFDAQTIFDDEVPAGALDIEIYRADH TAYSKVLGKVIMMKDAPEGHKKEDFVLLSGTKVREMLGRGEAPPPEFSRPEVAKILMD YYMAQDAKK" misc_feature 481739..482920 /locus_tag="Deba_0424" /note="ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]; Region: MET3; COG2046" /db_xref="CDD:32229" misc_feature 481835..482917 /locus_tag="Deba_0424" /note="ATP-sulfurylase; Region: ATPS; cd00517" /db_xref="CDD:173895" misc_feature order(482336..482350,482366..482368,482375..482377, 482549..482551,482624..482632,482636..482641, 482735..482743) /locus_tag="Deba_0424" /note="active site" /db_xref="CDD:173895" misc_feature 482357..482368 /locus_tag="Deba_0424" /note="HXXH motif; other site" /db_xref="CDD:173895" misc_feature 482435..482467 /locus_tag="Deba_0424" /note="flexible loop; other site" /db_xref="CDD:173895" gene complement(483066..484364) /locus_tag="Deba_0425" /db_xref="GeneID:9492871" CDS complement(483066..484364) /locus_tag="Deba_0425" /EC_number="6.2.1.30" /note="COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: dde:Dde_0972 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: phenylacetate--CoA ligase; SPTR: Q313X3 phenylacetate-CoA ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="phenylacetate--CoA ligase" /protein_id="YP_003806393.1" /db_xref="GI:302341864" /db_xref="GeneID:9492871" /translation="MMFWNQEIETLERGKLEQLQLQRLNKTLLQAANAPFYKDKLTDS AGRPVQLKSLEELAGLPFTEKKDLRAGFPYGHLATPRRDVVRVHVSSGTTGVPTAVYH TQSDLDNWTDLVARCLYMAGMRADDIFQNMIGYGLFTGGLGLHYGAERLGAMVIPSGV GNTSRQLSLIRQFAVSAVHVIPSYALKLLDSLREMKLDPRDLGLRLLIVGAEPYTEEA RQRIEHSYGAFACNSYGLSEVNGPGVAFECPHKNGMHLWEDNYILEVINPETLEPVAD GQQGELVLTTLCRQAMPLIRYRTRDLCTVLPGPCACGRTHRRISRIAGRTDDMFIIKG VNVYPMQVEATLMGFKEVGNDYVIVLTNDGPVDYMTVRVEIAERYRTMDSETMAKLSQ RLGRALRDELLVSTRVELLPPESIPAVVGKAVRVDDRRKH" misc_feature complement(483072..484364) /locus_tag="Deba_0425" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(484510..484836) /locus_tag="Deba_0426" /db_xref="GeneID:9492872" CDS complement(484510..484836) /locus_tag="Deba_0426" /note="KEGG: hypothetical protein; SPTR: A7RZB3 Predicted protein (Fragment)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806394.1" /db_xref="GI:302341865" /db_xref="GeneID:9492872" /translation="MSLDYSEIAIGDPKMVIARLTARIGQLNFSTRNIRVGLTASPEA TFLQQGGDGRWSVMKLLYVTRSFAKARQMGELLRAYDAKLFVDDEQMGLMGPHASTYY AYALIR" gene 485451..488132 /locus_tag="Deba_0427" /db_xref="GeneID:9492873" CDS 485451..488132 /locus_tag="Deba_0427" /note="COGs: COG0612 Zn-dependent peptidase; InterProIPR011765:IPR007863:IPR011249:IPR011237:IPR 001431; KEGG: mxa:MXAN_1141 M16 family peptidase; PFAM: peptidase M16 domain protein; SPTR: Q1DD72 peptidase, M16 (Pitrilysin) family; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16)" /codon_start=1 /transl_table=11 /product="peptidase M16 domain protein" /protein_id="YP_003806395.1" /db_xref="GI:302341866" /db_xref="GeneID:9492873" /translation="MRKKSWLALPALLALWLALAPAAQANEPIRHKLPNGVTVITKQN HEAPVVAIQVLVRAGSAFENERERGITHLIEHMIFKGTPTRPAGQMARQIEALGGQIN AYTSLDHTKYYVETASQNAAQALDILADAVVNAQFDPAELAREKEVVVEEIRMNQDDP DRRRFQALMTAAFGDHPYGRPVIGTEASVRAISRQDILDYRAKWYRGPGMVVVAVGDF QTEQLLPRIEKAFAAVPAQAQPEFSLPPANVTPGPRLVVLREDVRQAAVEAAWLIPGL PSEQVFALDMAATILGEGKTSRLYKELKHAEGLVDAVSCSAYTPVALGLFDIDASLAP KLADKAWPRALQLAGGLMARPPQVDELARAKVNLAAAFVRMRQTMAGQAGTLGYFEMM RGGFEHVQDYIDQFAAVDADRVAEVAREHLRPENLTLVLQLPEGAPAPDQAALAKLAQ EAYAQALAAASAQGPTAAPPAAQPVAGPRPANASDGQARKETLPNGLTVIVKPAHELP LVEMVLAAPGGQAAETPQDAGSRQLWASCLTRGAAGRSFQELSAILEGMAAGMGGFSG KSSGGLTASFLAQDWRRGLELLAEVWLRPDFPAAEVARAKAEQAAALRAQMDEPVARA FNAFRPLLYGDHPYAMNPLGSAESLARLDRQALVAVHQAMRGPGGVVLTIVGDVDPGQ TMAAVRELFGAAQGQARTPAPPAAPALTKARTRHIADPQAKQTQIIIGYIAPDATDPR RPAMELLEAILGGQGGRLFGDLRDKRSLAYSVQPFYGQAKQLGVFGFYMGVGPGKAKA AIAGLNEHIARLAATPPKAEEMNRAKAFLLGGWAIGLQTYQAQAMTMTADELLGLGYR DYLRTPERVQALAPGDILRAAKDVFAPQRQALLTLGL" misc_feature 485520..486761 /locus_tag="Deba_0427" /note="Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612" /db_xref="CDD:30957" misc_feature 485565..486008 /locus_tag="Deba_0427" /note="Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675" /db_xref="CDD:189663" misc_feature 486021..486545 /locus_tag="Deba_0427" /note="Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193" /db_xref="CDD:191225" misc_feature 486903..488126 /locus_tag="Deba_0427" /note="Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612" /db_xref="CDD:30957" misc_feature 487401..487931 /locus_tag="Deba_0427" /note="Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193" /db_xref="CDD:191225" gene 488296..488949 /locus_tag="Deba_0428" /db_xref="GeneID:9492874" CDS 488296..488949 /locus_tag="Deba_0428" /note="COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sat:SYN_02851 Zn-dependent hydrolase; SPTR: Q2LSY9 Zn-dependent hydrolase including glyoxylases; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="Zn-dependent hydrolase" /protein_id="YP_003806396.1" /db_xref="GI:302341867" /db_xref="GeneID:9492874" /translation="MVGGPEFSDPRDCLCYLAVGEKSRVLIDCGCGPSAGRIVSLAQR AAGAPPSHLLLTHAHIDHAGGAAQVKALCGCQVLIHRLEADVLAQGDGARSAADWYNM HLPPLTADVLLEGGEELDLGGGMILRIVHAPGHTPGSVCAWLESGGQRVLFGQDLHGP FSREFGSDLGQYAASMDALLELRADILCEGHYGVFGPAQSAAAFMRQQLAANLPRRR" misc_feature 488320..488868 /locus_tag="Deba_0428" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(489014..489703) /locus_tag="Deba_0429" /db_xref="GeneID:9492875" CDS complement(489014..489703) /locus_tag="Deba_0429" /note="KEGG: sil:SPO0655 hypothetical protein; SPTR: B4D151 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806397.1" /db_xref="GI:302341868" /db_xref="GeneID:9492875" /translation="MNDFEQPQPSSQPPPQPALPWEAPQRWLAGFYPTFWWIARYPSR TFSLPAAGGPLRPALFVAVLALHLELISQALAWALTPGVGLAELPSIIAVGLMNGMVQ GVGAAMLATPILSGLAHLALRAVGRARAPYVASYRALAYTAVTSVSVLAVMIVWHLAR LAWGAESGDSLVGVVMGGLACSLVWSLYVGGVALDAAHHCGKVTAMAAQVAAALAMIL FMFGIFGVGGA" gene complement(489778..490503) /locus_tag="Deba_0430" /db_xref="GeneID:9492876" CDS complement(489778..490503) /locus_tag="Deba_0430" /note="COGs: COG3375 conserved hypothetical protein; InterPro IPR000182:IPR016181; KEGG: tpe:Tpen_1785 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: B7A7E4 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003806398.1" /db_xref="GI:302341869" /db_xref="GeneID:9492876" /translation="MTPIIRPLAGQDDFAACAALEQEIWGLDELNAVSPITLHALGLR RPRLGLTLGAFDQGRMVGLCVMLGSLEPGVAYGHMLGVLPGWRDQGLGRRLIERAQAD LRAMGVGVVYITFEPLEARNAHLYLNVWGGRAVAYDRDHFPQTAKMHQGLPVDRFIAR FDLNAPPPVAPPLADAAPPLVEIPADLQALKAGDPAAALAWRMNTRPVFERYLNDGGL AAVGLRVEAGDGRRRCFIVLERA" misc_feature complement(490162..490344) /locus_tag="Deba_0430" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(490225..490230,490258..490266)) /locus_tag="Deba_0430" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 490775..492496 /locus_tag="Deba_0431" /db_xref="GeneID:9492877" CDS 490775..492496 /locus_tag="Deba_0431" /note="COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545:IPR001650:IPR005580:IPR014001:IPR 014021:IPR014014:IPR000629; KEGG: dps:DP1690 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: Q6AMK6 Probable ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase" /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase domain protein" /protein_id="YP_003806399.1" /db_xref="GI:302341870" /db_xref="GeneID:9492877" /translation="MLTYFAAQVRSTMDAPGFDQLGLSPLLTAAVTEQGFTSPTPIQT AMIPLMLEGRDVIGQAQTGTGKTAAFGLPLLHNISPGVGQAQALVLAPTRELAIQVAE ALQGYGRKMGARVMAVYGGAPYGLQISRLRKGVDVVVGTPGRVLDLIGQKALRLDMVE TVVIDEADEMLSMGFIADIQAILEATPSQRQTALFSATLPPAIRQMSQSYMVEPQSVS VSPRQLTVEAVEQRYYLLDERDKLAALCRLLEVEPVASALIFCRTKAGTGQLADELSA RGFAAEAINGDLSQEARIRVLGRFRNNQLKLLVATDVAARGLDIDDISHVINFDPPQD PEVYVHRIGRTGRAGRDGVAISLLSPKDRWLLARIEAYAKARLSHCTLPTPEEIMAHR EGRLLERMVALLDDGGFAREKGLAAKLEAQGHDLADIAAAALKLARGQEKTRTIDPVA EYSLTRPPRGRQPYPARDQRRGDSRRFDDRRQDDHRRVGETTAQPESGMVRLCLGMGR ADGINAGHVLGSLSHHAEIPGRCIGKIRIQDTRTLVDVSEQVVGRVLAKAAGYRIGRT PISVELA" misc_feature 490826..491428 /locus_tag="Deba_0431" /note="DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (...; Region: DEADc; cd00268" /db_xref="CDD:28928" misc_feature 490865..491470 /locus_tag="Deba_0431" /note="DEAD-like helicases superfamily; Region: DEXDc; smart00487" /db_xref="CDD:128763" misc_feature 490961..490975 /locus_tag="Deba_0431" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28928" misc_feature 491267..491278 /locus_tag="Deba_0431" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:28928" misc_feature 491360..491368 /locus_tag="Deba_0431" /note="motif III; other site" /db_xref="CDD:28928" misc_feature 491465..491845 /locus_tag="Deba_0431" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(491558..491569,491627..491632,491705..491713) /locus_tag="Deba_0431" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(491729..491731,491792..491794,491804..491806, 491813..491815) /locus_tag="Deba_0431" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 492272..492493 /locus_tag="Deba_0431" /note="DbpA RNA binding domain; Region: DbpA; pfam03880" /db_xref="CDD:146487" gene complement(492694..492891) /locus_tag="Deba_0432" /db_xref="GeneID:9492878" CDS complement(492694..492891) /locus_tag="Deba_0432" /note="KEGG: hoh:Hoch_5429 TonB-dependent receptor; SPTR: C1WWS0 2-oxoglutarate dehydrogenase E2 component" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806400.1" /db_xref="GI:302341871" /db_xref="GeneID:9492878" /translation="MKKLIALAAMMLAAFVIVGCSDSGQTAPEAQAPAATTEQAAPAQ EAAPAQEAAPAAPAEEAKPAE" gene complement(493028..493906) /locus_tag="Deba_0433" /db_xref="GeneID:9492879" CDS complement(493028..493906) /locus_tag="Deba_0433" /note="COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR013785; KEGG: cag:Cagg_1303 pyruvate carboxyltransferase; PFAM: pyruvate carboxyltransferase; SPTR: B8G8E9 pyruvate carboxyltransferase; PFAM: HMGL-like" /codon_start=1 /transl_table=11 /product="pyruvate carboxyltransferase" /protein_id="YP_003806401.1" /db_xref="GI:302341872" /db_xref="GeneID:9492879" /translation="MLEDQTLRDGLQILPRALPLARRLELLRGLADAGFQSVQIGSMA RPDKMPQMIGAERLARLAAGARPGLTLSALVFNRQGLERALACGLGKVALSASLSEPH SRANLGLDVAGGLARLGELTALARQAGLRARVGLQCAFGGPGLAAPPRELIARTFAWL ADLGAQEFFLADTAGLARPNQLRRMIAELGRNLPLEALGLHLHGRPEALRANLLAGWR AGVGRFDVTLGGLGGCPFLPGRAPGNLPAELAIAALQAAGAPPAIDPRAVENLGRRLR AMLDENIPPVYSAMAS" misc_feature complement(493232..493885) /locus_tag="Deba_0433" /note="DRE-TIM metallolyase superfamily; Region: DRE_TIM_metallolyase; cl07974" /db_xref="CDD:195649" misc_feature complement(order(493298..493300,493304..493306, 493388..493390,493394..493396,493496..493498, 493622..493624,493679..493681,493685..493687, 493790..493792,493871..493873,493880..493885)) /locus_tag="Deba_0433" /note="active site" /db_xref="CDD:163674" misc_feature complement(order(493790..493792,493880..493885)) /locus_tag="Deba_0433" /note="catalytic residues [active]" /db_xref="CDD:163674" misc_feature complement(order(493298..493300,493304..493306, 493394..493396,493880..493882)) /locus_tag="Deba_0433" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163674" gene complement(493923..495209) /locus_tag="Deba_0434" /db_xref="GeneID:9492880" CDS complement(493923..495209) /locus_tag="Deba_0434" /note="COGs: COG0535 Fe-S oxidoreductase; InterProIPR007197:IPR003731:IPR006638:IPR013785:IPR 005980; KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; PFAM: radical SAM domain protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C8QZK3 Nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: radical SAM superfamily; Dinitrogenase iron-molybdenum cofactor; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB" /codon_start=1 /transl_table=11 /product="nitrogenase cofactor biosynthesis protein NifB" /protein_id="YP_003806402.1" /db_xref="GI:302341873" /db_xref="GeneID:9492880" /translation="MNEPLEPNRHPCFDEAAKGAFGRAHLPVAPLCNIKCNYCDRRYD CVNESRPGVSSAVLQPHQAQAYMERALQAEPRLSVAGIAGPGDPLANAEATLETILRI KRARPELLLCLATNGLALPAHAATLIKAGLSHLTLTVNAVDPAIGQNIYAWVRDGKVV YRGLAGAELLLARQEEGLALLKDSGVKVKINTIVIPGVNDGHVERVARWAAARGAHLM NLMPLFPNQGTAFGHIPEPPRPLMERLRAVCEIHLPQMRHCTRCRADAVGLLGQDQSP RLAGCLSQCAKLAPPADAARPFVAVASREGVLVNLHLGQAERFQIWGPTADGFELLDT RQAPPAGGGEARWRQVAELLADCRAVLCSGVGQTPRTVLAESGLAAVEMQGFILEGLK RLYAGEDLSALRLRRSGGGCAGGGKGRGGGDGLGCM" misc_feature complement(494055..495185) /locus_tag="Deba_0434" /note="nitrogenase cofactor biosynthesis protein NifB; Region: nifB; TIGR01290" /db_xref="CDD:162287" misc_feature complement(494580..495134) /locus_tag="Deba_0434" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" misc_feature complement(494025..494315) /locus_tag="Deba_0434" /note="This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme; Region: NifX_NifB; cl00252" /db_xref="CDD:153627" gene complement(495223..496596) /locus_tag="Deba_0435" /db_xref="GeneID:9492881" CDS complement(495223..496596) /locus_tag="Deba_0435" /EC_number="1.18.6.1" /note="COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR000318; KEGG: dma:DMR_17510 nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: C4XQ77 Nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: Nitrogenase component 1 type Oxidoreductase" /codon_start=1 /transl_table=11 /product="Nitrogenase" /protein_id="YP_003806403.1" /db_xref="GI:302341874" /db_xref="GeneID:9492881" /translation="MTREITSPDYVSTTNACKLCMPLGACLAFKGVEGAAPFLHGSQG CATYMRRYLISHFREPVDIASSSLGENQAIFGGGPNLKKGLVNVINKYGAKVVGIATT CLTETIGDDVPGLVREFLAEAKVETPDGQMPALITVPTPAYGGSHVDGFHAAVLAMVS QLAQPTPAHGGVNLLPGFVSPADLRRLATVTRAYGLRAALAPDYSRTLDAPAMATYEA LPAGGVSLNQLRAMGGAKATIELGHCLPGRSAGSWLEMYLNVPLRSLGLPMGVRACDA LHQALRELSGRDTPEEIELERGRLIDAMIDGHKYLSGKTAVIYGDEDMVVGVAGWLAE LGVRPALCATGGKSGRFPAAIAEVTEGLVRQPARAVDGVDFQQIGEMARQIGPDILVG NSKGYRLARELGVPLVRVGFPIHDRFGGQRLLCLDYQGSQELLDRIINAILAHDQDRH HWGYGYL" misc_feature complement(495268..496560) /locus_tag="Deba_0435" /note="The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent...; Region: Oxidoreductase_nitrogenase; cl02775" /db_xref="CDD:194435" misc_feature complement(495271..496539) /locus_tag="Deba_0435" /note="Nitrogenase component 1 type Oxidoreductase; Region: Oxidored_nitro; pfam00148" /db_xref="CDD:189419" gene complement(496593..497960) /locus_tag="Deba_0436" /db_xref="GeneID:9492882" CDS complement(496593..497960) /locus_tag="Deba_0436" /note="COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR005973:IPR000318; KEGG: dba:Dbac_0841 nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; SPTR: C7LPB6 Nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifE" /codon_start=1 /transl_table=11 /product="nitrogenase MoFe cofactor biosynthesis protein NifE" /protein_id="YP_003806404.1" /db_xref="GI:302341875" /db_xref="GeneID:9492882" /translation="MAKVVFEERSDQIFEKGEDRPFRISCDKQSLAGAVSQRACVFCG SRVVLYPIADALHLIHGPVGCAAYTWDIRGALSSGPMLHRHSFSTDLQERDVVFGGEK KLERALRELIARHRPKAAFVYSTCIVGIIGDDMAAVCRKIEAEAGIPVIPVMSEGFKG NKRAGYAAACRAMARLIGQGPTEGISPHSVNLLGDFNLAGETWIIKRYLEQMGVEVVA GVTGDGRVADLMRAHGAALNLVQCSGATMELARMMQRDYGTPFLRVSYLGVDDMAQAL YDVADFFGDPLMAARAQELVSRELGALYPQLMELRQDLQGKRAAMYVGGAFKAFSLIK AFRLLGMRVVLAGSQTGTEEDYEELARVSDPGTIIVDDANPLELMNYLLEKDVDVFVG GVKERPIAYKLGIGFCDHNHERKLALEGFEGMLNFAREIHATVMSPVWRFTPRRMALA KEAAA" misc_feature complement(496623..497948) /locus_tag="Deba_0436" /note="nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional; Region: PRK14478" /db_xref="CDD:184699" misc_feature complement(496641..497870) /locus_tag="Deba_0436" /note="The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent...; Region: Oxidoreductase_nitrogenase; cl02775" /db_xref="CDD:194435" gene complement(497973..498275) /locus_tag="Deba_0437" /pseudo /db_xref="GeneID:9492883" gene complement(498326..499480) /locus_tag="Deba_0438" /db_xref="GeneID:9492884" CDS complement(498326..499480) /locus_tag="Deba_0438" /note="COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197:IPR003731; KEGG: dsa:Desal_0442 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM domain protein; SPTR: C6BX29 Dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: radical SAM superfamily; Dinitrogenase iron-molybdenum cofactor" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_003806405.1" /db_xref="GI:302341876" /db_xref="GeneID:9492884" /translation="MSKTHEPASDFCAAARRSSGRVHLPVAPRAMARIRFSAEKPLPR ALTPEQALNWLDYLIEQGQTIKAVNVGGPGDPMATPELTLEVLAMLRAKLPGVSLCLT TLGLGLTALADRLAALDLAHLAMLVDAVDPLVAAKVYAWIRPGVRTIPLAQAADQLID QQAAAITALKARGLPVIVKTTVYPGVNVEHVELIAATAARLGATELRLFPFSAVDDGS PRPLGQLDPARLEALTQAAAAHLPTMFIDPRACDKALTYDFGQPEAAGHALPRPSESR PYLAVCSSNGFDVDLHLGQAEQYLIYGPKNGPVALLEARPAPAPGGGEARWRQTAQIL GDCFAVLAAAAGEAPKRALVEAGLSVLCQEGNIEGMVEALHGGRKKGRGK" misc_feature complement(498407..499450) /locus_tag="Deba_0438" /note="nitrogenase cofactor biosynthesis protein NifB; Region: nifB; TIGR01290" /db_xref="CDD:162287" misc_feature complement(498359..498649) /locus_tag="Deba_0438" /note="This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme; Region: NifX_NifB; cl00252" /db_xref="CDD:153627" gene complement(499515..500894) /locus_tag="Deba_0439" /db_xref="GeneID:9492885" CDS complement(499515..500894) /locus_tag="Deba_0439" /EC_number="1.18.6.1" /note="COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR005976:IPR000318; KEGG: dsa:Desal_0443 nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: C8R0M8 Nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron protein beta chain" /codon_start=1 /transl_table=11 /product="nitrogenase molybdenum-iron protein beta chain" /protein_id="YP_003806406.1" /db_xref="GI:302341877" /db_xref="GeneID:9492885" /translation="MLLRHTPDNLVERGALTINPAKTCQPIGAMYAALGVHGCLPHSH GSQGCCAYHRSTLTRHYKEPISAGTSSFTEGASVFGGQANLLQAIDNIFTVYEPEVIA VHTTCLSETIGDDLPQILDKADKDGKIPKGKHVIYANTPSYVGSHVTGFSNMVKGMAR VAVSTGHKNGKVNIIPGWVEPADMEEIKRLAAMVGVDIIMFPDTSGVLNGPLSGEYKM FPEGGVTIKQLREAGDSIGTLALGEWCSADGARFLDTTLKVPCRVLDMPFGLRATDRF VDALRIVAGRSVPEEVAHERGQLVDMISDMHQYFYHKKVALAGDPDQLIAMTEFLTSI DMWPTHIVSGTPGKAFEARIRELTAGLPYAVNVKCDQTADMFLLHQWIKNDPVDLLMG NTYLKHIARDEDIPLVRWGFPILDRVGHQYFPTVGYKGGLRLLEKILSALLDRKDRDD QEHAFELVL" misc_feature complement(499563..500858) /locus_tag="Deba_0439" /note="The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent...; Region: Oxidoreductase_nitrogenase; cl02775" /db_xref="CDD:194435" misc_feature complement(499569..500825) /locus_tag="Deba_0439" /note="Nitrogenase component 1 type Oxidoreductase; Region: Oxidored_nitro; pfam00148" /db_xref="CDD:189419" gene complement(500920..502563) /locus_tag="Deba_0440" /db_xref="GeneID:9492886" CDS complement(500920..502563) /locus_tag="Deba_0440" /EC_number="1.18.6.1" /note="COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR005972:IPR010143:IPR000318; KEGG: dsa:Desal_0444 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: C8R0M9 Nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase molybdenum-iron protein alpha chain" /codon_start=1 /transl_table=11 /product="nitrogenase molybdenum-iron protein alpha chain" /protein_id="YP_003806407.1" /db_xref="GI:302341878" /db_xref="GeneID:9492886" /translation="MTPAMFNNDTTMTAAEIKEELLKKYPPKVARKRAKQIMINEALE NETPEITANVRTIPGIITMRGCTYAGCKGVIMGPTRDIVNITHGPIGCGFYSWLTRRN QTDAYAPDAANYMTYCFSTDMQDKDIIFGGEKKLEAAIQEAYDLFHPKGICVFATCPV GLIGDDIHAVAAKMKAKFGDCNVFAFSCEGYKGVSQSAGHHIANNQVFKHLVGLDDQG KPGKYRINLLGEYNIGGDGFEIDRILNKCGVTNIATFSGNSTYDQFASSHTADLNAVM CHRSINYVADMLETKYGIPWVKVNFIGANAAAKSLRKIASYFGDQELIDRVEEVIAEE MPAVRAVAEEVRPRTEGKTAMLFVGGSRAHHYQELFKELGMKTISAGYEFAHRDDYEG RQVIPELKVDADSRNIEELEVSPDERLFRPRKSQEELRALESSGLKFKDYDGLIPDME RGAVVIDDLNQYEAEKLVELLKPDIFCAGIKEKFSIQKLGVPMKQLHSYDSGGPYAGF RGAINFYREIDRLVNSRVWGYLKAPWQENPELSATYVWE" misc_feature complement(500983..502482) /locus_tag="Deba_0440" /note="nitrogenase alpha chain; Region: alt_nitrog_alph; TIGR01284" /db_xref="CDD:188127" misc_feature complement(500992..502416) /locus_tag="Deba_0440" /note="Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to...; Region: Nitrogenase_MoFe_alpha; cd01976" /db_xref="CDD:48077" misc_feature complement(order(500992..500994,501001..501003, 501016..501018,501025..501030,501037..501039, 501055..501057,501082..501084,501100..501105, 501109..501114,501121..501126,501169..501171, 501178..501183,501553..501555,501775..501780, 501808..501813,501850..501852,501859..501864, 501982..501987,501991..501996,502123..502131, 502135..502140,502159..502161,502180..502182, 502189..502200,502204..502206,502210..502215, 502252..502257,502261..502263,502267..502269, 502273..502284,502297..502299,502324..502326, 502357..502359,502369..502374,502381..502392, 502396..502401)) /locus_tag="Deba_0440" /note="MoFe protein alpha/beta subunit interactions; other site" /db_xref="CDD:48077" misc_feature complement(order(501994..501996,502090..502092, 502288..502293,502297..502299,502360..502362, 502366..502368)) /locus_tag="Deba_0440" /note="Alpha subunit P cluster binding residues; other site" /db_xref="CDD:48077" misc_feature complement(order(501073..501075,501412..501414, 501478..501480,501484..501492,501733..501735, 501865..501867,501871..501873,501964..501966, 502264..502266,502342..502344)) /locus_tag="Deba_0440" /note="FeMoco binding residues [chemical binding]; other site" /db_xref="CDD:48077" misc_feature complement(order(501970..501972,501991..501993, 501997..501999,502066..502077,502081..502083, 502177..502182,502186..502191)) /locus_tag="Deba_0440" /note="MoFe protein alpha subunit/Fe protein contacts; other site" /db_xref="CDD:48077" misc_feature complement(order(501001..501006,501040..501042, 501106..501108,501115..501117,501535..501537, 501541..501546,501553..501561,501565..501570)) /locus_tag="Deba_0440" /note="MoFe protein dimer/ dimer interactions; other site" /db_xref="CDD:48077" gene complement(502588..502959) /locus_tag="Deba_0441" /db_xref="GeneID:9492887" CDS complement(502588..502959) /locus_tag="Deba_0441" /note="COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR011322:IPR015867:IPR017918; KEGG: dsa:Desal_0445 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: C6BX32 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_003806408.1" /db_xref="GI:302341879" /db_xref="GeneID:9492887" /translation="MKEVIAVVRMNTMNKTKKALTAAGIDSMFAHECQGRGKGLVDSK LLSGASQGYEEAIALLGEKGKLYSKRMLTMVVPDKQVDAVVRTIIESNQTGKPGDGKI FVLPIGEAIRVRTGETGGKAL" misc_feature complement(502612..502950) /locus_tag="Deba_0441" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene complement(502956..503312) /locus_tag="Deba_0442" /db_xref="GeneID:9492888" CDS complement(502956..503312) /locus_tag="Deba_0442" /note="COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR011322:IPR015867; KEGG: dba:Dbac_0835 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: C7LPB0 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_003806409.1" /db_xref="GI:302341880" /db_xref="GeneID:9492888" /translation="MMIMVRAIVRPEKADDVLTALMDAGFPAVTKYSVAGRGKQRGIK IGEITYDEIPKTMLMSVIRAEDKDFVIETIMKSARSGAKGAFGDGKIFVSPVEDVYTV SSGVCDTAPAEGEASA" misc_feature complement(502998..503300) /locus_tag="Deba_0442" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene complement(503348..504175) /locus_tag="Deba_0443" /db_xref="GeneID:9492889" CDS complement(503348..504175) /locus_tag="Deba_0443" /EC_number="1.18.6.1" /note="COGs: COG1348 Nitrogenase subunit NifH (ATPase); InterPro IPR000392:IPR005977; KEGG: dba:Dbac_0834 nitrogenase iron protein; PFAM: NifH/frxC-family protein; PRIAM: Nitrogenase; SPTR: C7LPA9 Nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; TIGRFAM: nitrogenase iron protein" /codon_start=1 /transl_table=11 /product="nitrogenase iron protein" /protein_id="YP_003806410.1" /db_xref="GI:302341881" /db_xref="GeneID:9492889" /translation="MRKIAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADST RLLLGGLAQRSVLDTLREEGEEVDLADIRRGGFGGTWCVESGGPEPGVGCAGRGIITS INMLESLGAYEASEKLDYAFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAA NNICKGIRKYAESGTVRLGGLICNSRNVDNEKEMIQELAKMIGTQMIYFVPRDNDVQR AEINRKTVIEWNPEAPQAQHYRNLAQAIDGNQMFVVPNPLAIEQLEQLLLDFGLLAA" misc_feature complement(503354..504175) /locus_tag="Deba_0443" /note="nitrogenase reductase; Reviewed; Region: nifH; PRK13235" /db_xref="CDD:183907" misc_feature complement(503363..504175) /locus_tag="Deba_0443" /note="NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the...; Region: NifH; cd02040" /db_xref="CDD:48369" misc_feature complement(order(503792..503797,503804..503806, 504050..504052,504056..504058,504062..504064, 504131..504139,504143..504145,504152..504154)) /locus_tag="Deba_0443" /note="Nucleotide-binding sites [chemical binding]; other site" /db_xref="CDD:48369" misc_feature complement(504131..504154) /locus_tag="Deba_0443" /note="Walker A motif; other site" /db_xref="CDD:48369" misc_feature complement(504047..504067) /locus_tag="Deba_0443" /note="Switch I region of nucleotide binding site; other site" /db_xref="CDD:48369" misc_feature complement(order(503783..503785,503894..503896)) /locus_tag="Deba_0443" /note="Fe4S4 binding sites [ion binding]; other site" /db_xref="CDD:48369" misc_feature complement(503792..503806) /locus_tag="Deba_0443" /note="Switch II region of nucleotide binding site; other site" /db_xref="CDD:48369" gene complement(504366..505016) /locus_tag="Deba_0444" /db_xref="GeneID:9492890" CDS complement(504366..505016) /locus_tag="Deba_0444" /note="COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148:IPR006037:IPR016040; KEGG: dba:Dbac_0339 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: C7LVC4 TrkA-N domain protein; PFAM: TrkA-N domain; TrkA-C domain" /codon_start=1 /transl_table=11 /product="TrkA-N domain protein" /protein_id="YP_003806411.1" /db_xref="GI:302341882" /db_xref="GeneID:9492890" /translation="MEVAIIGLGNFGQHLAIRLFELGHEIIAMDVDPKAVSRVQDHVQ QAIVADATDRAVLEDLGVGLAEAAIVSVGDHIGSSVLITLHLREMAVPRIVAKAISPE HEKILQKVGADRIVFPERDAALRLAGTLDHPDLLEFLPIGGEYHVAEMAPPPSMIGKS LAALDLRRRFNINVIALREKGSHLTRVVVAPDYVLSQNDLMVVLGKPADLERLRKD" misc_feature complement(504372..505016) /locus_tag="Deba_0444" /note="K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]; Region: TrkA; COG0569" /db_xref="CDD:30915" misc_feature complement(504663..505010) /locus_tag="Deba_0444" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(504372..504581) /locus_tag="Deba_0444" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(505039..506403) /locus_tag="Deba_0445" /db_xref="GeneID:9492891" CDS complement(505039..506403) /locus_tag="Deba_0445" /EC_number="3.6.3.14" /note="COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: pca:Pcar_0086 TrkH family potassium uptake protein; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: Q3A8E3 Potassium uptake protein, TrkH family; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family" /codon_start=1 /transl_table=11 /product="H(+)-transporting two-sector ATPase" /protein_id="YP_003806412.1" /db_xref="GI:302341883" /db_xref="GeneID:9492891" /translation="MPASQATTWSSPFRLLVGSFAGLILLGAALLGLPWCQAAEAVGW LDCLFTSASAVCVTGLITVDTATAWSPWGQALIAVLIQLGGLGIMTFSVGLLYLTGRR PGMASRMALRGALGAAPPRELGLLLRDVIGYTLLIESIGAALLFARFVFDHPPHLALG LAVFHAVSAFCNAGFSMFGDSLVGYAKDPLINLTVMGLIFLGGIGFIILRELRLRLLD HTRRHPRLNLSARMALVTSLWLIVGGATAIGLFELLAEGGPDFFGHLWEILFTSVTAR TAGFNTIDLNLLCNSSLFVVMMLMFVGASPGSCGGGVKTTTLAVLWAMARSRLGGRPT TEAGGRTVPEAQVGVALALVLLALSVLSVATVTLMSVGLAEPFLGHQRGDFLVLAFEA VSAFATVGLSMGATPLLTPAGKWVIIILMFIGRLGPLTLVYALAQRGRAIGYSLAEEQ VSLG" misc_feature complement(505129..506274) /locus_tag="Deba_0445" /note="potassium uptake protein, TrkH family; Region: 2a38; TIGR00933" /db_xref="CDD:162118" misc_feature complement(505096..506031) /locus_tag="Deba_0445" /note="Cation transport protein; Region: TrkH; cl10514" /db_xref="CDD:187005" gene 506571..507371 /locus_tag="Deba_0446" /db_xref="GeneID:9492892" CDS 506571..507371 /locus_tag="Deba_0446" /note="COGs: COG0496 acid phosphatase; InterPro IPR002828; KEGG: sfu:Sfum_1169 stationary-phase survival protein SurE; PFAM: Survival protein SurE; SPTR: A0LHG0 5'-nucleotidase surE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE" /codon_start=1 /transl_table=11 /product="stationary-phase survival protein SurE" /protein_id="YP_003806413.1" /db_xref="GI:302341884" /db_xref="GeneID:9492892" /translation="MRILLTNDDGVMAAGIGALHQVLCQRHEVFVVAPETEQSAVGHS ITLADPIKVRPLSAKTGMNGFAVAGTPADCVKLAMGQLMPQPPDLVVSGINQGANVGV NVLYSGTVSAATEAAILGLRSLAFSLASHTSRDFSHAAAVAAGLIEQYDLLAAPPEVC LNVNIPALPVDQIKGVRLARQSCSRLGERFLRRTDPRGHVYFWQAGESMGVEGGPDTD YPALLEGYVTITPLRHDMTHNQALRRMSEQWRAPRLPGAPAGGDACEK" misc_feature 506571..507317 /locus_tag="Deba_0446" /note="Survival protein SurE; Region: SurE; cl00448" /db_xref="CDD:193823" gene 507622..507801 /locus_tag="Deba_0447" /db_xref="GeneID:9492893" CDS 507622..507801 /locus_tag="Deba_0447" /note="InterPro IPR013429; KEGG: rmu:RMDY18_05530 hypothetical protein; PFAM: regulatory protein FmdB; SPTR: C6R3Q5 Type I antifreeze protein; PFAM: Zinc ribbon domain" /codon_start=1 /transl_table=11 /product="regulatory protein FmdB" /protein_id="YP_003806414.1" /db_xref="GI:302341885" /db_xref="GeneID:9492893" /translation="MPVFEYVCSNCQNVEKRITGIDDHTVICERCGQVSVRKADVESL LASYAVDRGEVESGR" misc_feature 507622..507735 /locus_tag="Deba_0447" /note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS; cl00993" /db_xref="CDD:197419" gene 507817..508569 /locus_tag="Deba_0448" /db_xref="GeneID:9492894" CDS 507817..508569 /locus_tag="Deba_0448" /note="KEGG: dae:Dtox_1266 protein of unknown function UPF0153; SPTR: C8W5G6 Putative uncharacterized protein; manually curated" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806415.1" /db_xref="GI:302341886" /db_xref="GeneID:9492894" /translation="MLAAWPRDVAWAVDQAVGRGFARDLASAYAKLPDTICAREGHCC GLLPPVHPIEALCWLGRLADQRADRRADELANLTEHFLTNAVRRRPCPWREEGACHVY EQRFFGCRAYGLWSAGHYARRHRAAAGNQARVAAAWAELGVKLPNEVLAAGPGYCRNV RPISGAAAPSDADIEALESRIQALGRGMTMPEAVWQWGGDISFAAAWLTLGPRLALER KVAATRAALAGLHQEFAEIIDQSRQAAREMAC" gene 508654..509589 /locus_tag="Deba_0449" /db_xref="GeneID:9492895" CDS 508654..509589 /locus_tag="Deba_0449" /note="COGs: COG2206 HD-GYP domain; InterPro IPR006674:IPR003607; KEGG: dat:HRM2_39120 HD-GYP hydrolase domain family protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C0QBG8 HD-GYP hydrolase domain family protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_003806416.1" /db_xref="GI:302341887" /db_xref="GeneID:9492895" /translation="MPAEPAHDQAEIQRVRRPQVWCYRGIPIYRRDARGDLVLFKDRG RTLAEMGFDERTLPGELYVLRRDKLSAIAEVQAGLNGRMLAAAAVGDHQRVKLILTQI VEETFADPRAGNLEALGQTVKGLVEVYAGTGAALQRMALMTSKDYSTAVHSVNVAALV MGFCLFQKRPQAEVINLGLAALLHDLGKLFIDGGVLTAQRRLTSDEFAQIKAHPTRGL EALAGGDFPAEVALAVAQHHEKIDGSGYPLGLTYFSEAGQLVGLVDCYEALTSDERVY RPPMTPLDTLKLLKGDMAAGKFDRALFEQFAYSLV" misc_feature 509092..509520 /locus_tag="Deba_0449" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature order(509107..509109,509203..509208,509443..509445) /locus_tag="Deba_0449" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature 509206..509208 /locus_tag="Deba_0449" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene complement(509593..511191) /locus_tag="Deba_0450" /db_xref="GeneID:9492896" CDS complement(509593..511191) /locus_tag="Deba_0450" /note="KEGG: dra:DR_2413 chromate transport protein; SPTR: A4TWU0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806417.1" /db_xref="GI:302341888" /db_xref="GeneID:9492896" /translation="MAERRRGPAVGLWPGLVEAASGLAVAGWVWWLWPRLGLPVLGAE RWWFGLGWLIMLAGPAGLRLVGVSPRGRLAADAVSPAMCAWGAHLCGWLFGALLYFGA LLGNYKLWLGLVYLCGLGLRLGGLSLGLRAELRQGARRPWLTGLAGAGLALMSCLLCL AWVRPDLAAQWPPDPWLAWRPALAALLWALICGATLVILPALPRGRRLGWLVYLALSV GALPALAVAWFELAPLAALAGCAVGLAFAGRLRARRRGPSLPPPDNPLPVYWLLRALL VLWWAAGLAVSLAVAWWRPDVGALLLEAEWLRALALGAFLVICLGLLAEYSLPLMGQE GWLELTRRSRALNLCLSALALAASLAPFMLYQWPKPREAPPRPLTRLELLEKPVVLSP DNPELKLTAPEWLSGVSRLHVFGHLLTAEDAPQGAPVVQLVATDEQDVPYIFLLRAGV DTADRDLDKRDAADARHQKARVARSWPVFAPTGEAYQAHDYYTGLYLGRRVGGLAQAR LRYIYKNPPGQPPLKVLIRRVAVE" gene complement(511178..512380) /locus_tag="Deba_0451" /db_xref="GeneID:9492897" CDS complement(511178..512380) /locus_tag="Deba_0451" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: sti:Sthe_0904 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D1C274 glycosyl transferase group 1; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806418.1" /db_xref="GI:302341889" /db_xref="GeneID:9492897" /translation="MSGWPAVIDGRAMQAGFKAHKERGIGRYAQNLLAAMLAEVGPQG LELLVQGNLPDPDFDSRVKRLPAGYLPRWLPYGKRLISHYWLARRPLLPAWRAGRVVH FIAHLDAPLWPLRPTVITVHDLIAQRLPQIYSQGVSQARFRLERWVETRCLGRAQRLI AVSECTKRDLVELYGLDPERVSVVHEAADPHLAPVADPAARAAVLARHGLEPGAPFFF YLGGIDQRKDMPGLLEALAICRATDERALLVMAGSIEGDKQYPAFLGHIKRLGLEHAV RRLGFVADDDLPALFSACVAFVFPSLYEGFGLPPLEAMACGAPVIAVAAAAVPEVVGQ AGLLTPPGRPAELAQAMGEVLARPELADQLRQAGAARARLFSWRRAARETLAVYGQAL EEWADGRT" misc_feature complement(511223..512362) /locus_tag="Deba_0451" /note="This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the...; Region: GT1_mtfB_like; cd03809" /db_xref="CDD:99981" misc_feature complement(511199..512311) /locus_tag="Deba_0451" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" gene complement(512377..514731) /locus_tag="Deba_0452" /db_xref="GeneID:9492898" CDS complement(512377..514731) /locus_tag="Deba_0452" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: mba:Mbar_A0373 hexosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Q46FI5 Hexosyltransferase; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806419.1" /db_xref="GI:302341890" /db_xref="GeneID:9492898" /translation="MASEASKGLRATFVTPWYGQGIPGGAEAEARRTAQNLAQAGVDV GVLTTCLAGLGSDWDSDALPAGESVEQGVRVRRFPTAGRDAEAFNRLNQRVMAGHFLT PHEERDFFGNMINSPELLAYLAAHPEEGPFFFIPYLFTTAVWGPLIHPAKSVIIPCLH DEGYARTASVRRAFEAARAVVFHAPAEKSLAARLYDLGRTEPLILGEGIETGWHGDAE RFKQKYGHGRFILYAGRKDAGKNVPLLIHYFMRYVAERQGADGLKLLLIGNLPAPIPP GGEKYCLDLGFVPLQDKYDAYAAAELLVQPSIMESFSIVIMESWLAGAPVLVHGDCAV TREHVERSGGGLHFRDYPHFAQCLELILADRALRDQMAQAGRRYVLDNYSWPEVTRRY LGLIERLSAEPTPAPTRWEGPIARQPAGRAKGPKIHQMLPDFAFGDAIGSDVLALQKA LRSWGAASDVFALNVDARVAGQARPIHEYAAEAGPDDVLIFHFSIGHPLVEQFLSLPG RKVLRYHNITPARYFDELNPEAAQRCRQGRQQLALVAPAVELGLGVSPYNAEELRQAG CPAVEVSPILLDLDVLNTPPDGLVLGRFGDRRRNVLHVGRLAPNKCVEDLIKTHYWLN KLAPGARLLIVGSAGGMEPYAWAMRRLVGELGVRDAHFSGHVSFPALMAYYRAADVYL CQSEHEGFCVPLVESMHFGLPIVAHAATGVPGTLGDGGVLLPHKDHVATAETLAHILG DEGLRRQLSAAAQARLERFRPRRVAEELRQILNQRLGLALGGRS" misc_feature complement(513526..514695) /locus_tag="Deba_0452" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature complement(513541..514695) /locus_tag="Deba_0452" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" misc_feature complement(512506..513315) /locus_tag="Deba_0452" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" gene complement(514735..516078) /locus_tag="Deba_0453" /db_xref="GeneID:9492899" CDS complement(514735..516078) /locus_tag="Deba_0453" /note="InterPro IPR013216; KEGG: mac:MA1178 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q8TRJ7 Putative uncharacterized protein; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003806420.1" /db_xref="GI:302341891" /db_xref="GeneID:9492899" /translation="MTDQTQPPKPDVSALLAQVEAAVQAKKAAGFYNPAEIRRVEAAA VSYQRSAEDGAAAELTLWQKTLVELVNPTDWGVETHRGGAAGRLIVGVKKLVYKASKF CLNVWLATQVKYNAALVRLTGVLLPQHLDLRARMPQAEQRLELLEDICRDLAEGLSRT RNGLRDAENRLSGLDKTAARGREQVEPLLAELERLAQRLAQAGQVPAQTVGDLASLRR QSRDGAYLAFEELHRGRPEEIKARQMVYLPHFRDGVGPERPLLDIGCGRGEFLALAAE AGLAARGVDQNADSVATARAAGLDAVQADALEYLRGLPDQSLGGILMAQVVEHLTLDE LMELLGLCVAKLAPGGALIAETINPQSLCTFASAFYLDLTHQKPIHPEALRFIWRWLG LSGVEVLYLSEIPADGKLELVVDDGQNLTGAFNRNIMRLNQLLYGPQDYAVLGRK" gene complement(516075..517319) /locus_tag="Deba_0454" /db_xref="GeneID:9492900" CDS complement(516075..517319) /locus_tag="Deba_0454" /note="COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mxa:MXAN_4622 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q1D3I3 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806421.1" /db_xref="GI:302341892" /db_xref="GeneID:9492900" /translation="MSQQPAIEVKGLVKRFRREILQGDYTTWKTLLLKPFSRRRAKDF ITVLGGVDLTMTPGKTLAVIGQNGSGKSTLLKILAGIYKADEGQVIIRGRVSSLIELG AGFHPEFTGRENVFLNGAILGLTKKEIASRFDEIAEYSGLGEYIDAPVRTYSSGMYVR LGFSVAVNVDPDVLLVDEVLAVGDEAFAHKCEDKINQFRRRGKTICLVTHDLEAVKKY ADEVIWLDGGRVAAQGPPLPVIDAYRQKVAAAEDAIRRAQAHQPALILDQERWGDGDA RITAWRILDAGGAERAVFNTGEAFAVEMDYEAKAPLPDLVCGVGIFNAQATLCYGVNT RIDRQVYQNPPMQGTLRFEAQRLDLLQGTYFLDIAIHDKSGRDIDYIRQAASFAVRSS VGDEGVFRPPHAWSLRPLGEAR" misc_feature complement(516579..517310) /locus_tag="Deba_0454" /note="ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagH; COG1134" /db_xref="CDD:31329" misc_feature complement(516618..517301) /locus_tag="Deba_0454" /note="ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides...; Region: ABC_KpsT_Wzt; cd03220" /db_xref="CDD:72979" misc_feature complement(517104..517127) /locus_tag="Deba_0454" /note="Walker A/P-loop; other site" /db_xref="CDD:72979" misc_feature complement(order(516690..516692,516786..516791, 516897..516899,517101..517109,517113..517118)) /locus_tag="Deba_0454" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72979" misc_feature complement(516897..516908) /locus_tag="Deba_0454" /note="Q-loop/lid; other site" /db_xref="CDD:72979" misc_feature complement(516834..516863) /locus_tag="Deba_0454" /note="ABC transporter signature motif; other site" /db_xref="CDD:72979" misc_feature complement(516786..516803) /locus_tag="Deba_0454" /note="Walker B; other site" /db_xref="CDD:72979" misc_feature complement(516768..516779) /locus_tag="Deba_0454" /note="D-loop; other site" /db_xref="CDD:72979" misc_feature complement(516684..516704) /locus_tag="Deba_0454" /note="H-loop/switch region; other site" /db_xref="CDD:72979" gene complement(517429..518826) /locus_tag="Deba_0455" /db_xref="GeneID:9492901" CDS complement(517429..518826) /locus_tag="Deba_0455" /EC_number="2.7.8.6" /note="COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" /codon_start=1 /transl_table=11 /product="Undecaprenyl-phosphate glucose phosphotransferase" /protein_id="YP_003806422.1" /db_xref="GI:302341893" /db_xref="GeneID:9492901" /translation="MFEKRLRFFRSLLFVVDLAVVALCWIAAYFWRFFAPLFPVTKGV PDLDLYLTLLFLVLAVFAVALPASGIYRRPWARPAQVWWPALRASATGVIMAVTLTYF LRPYDFSRMVFAQFFALIFVALILARPLMQAAMRRFYNERAGEGVLIIGAEELGRQVA ANIQKHPELGLRVVGFLSRRPEMIGKQIDGLSVLGGYQAIKGILAGGSVHMLIIALPL AAHDRINEVLEQVADEAVDVKIVPDLYRFMKLRGSVEEFEGMPVIGLAGSPLEGWSRL VKRAVDIVGSLAGIVLLGPLMLAAAIGVRLSSPGPIFYRQERMGMDGRLFSMLKFRSM PVGAEDECGPVWACEDDCRPTRFGAFMRKYSIDETPQFFNVLRGEMSLVGPRPERPEL IAEFRKQIPGYMLRHRTKAGITGWAQVNGWRGNTSLEKRIEHDLYYIENWSPWFDFQI MLRTVGRVLFDPNAY" misc_feature complement(517432..518757) /locus_tag="Deba_0455" /note="Undecaprenyl-phosphate glucose phosphotransferase; Region: WcaJ_sugtrans; TIGR03023" /db_xref="CDD:188269" misc_feature complement(518107..518388) /locus_tag="Deba_0455" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(517432..517995) /locus_tag="Deba_0455" /note="Bacterial sugar transferase; Region: Bac_transf; cl00939" /db_xref="CDD:193981" gene complement(518948..519310) /locus_tag="Deba_0456" /db_xref="GeneID:9492902" CDS complement(518948..519310) /locus_tag="Deba_0456" /note="COGs: COG1734 DnaK suppressor protein; InterPro IPR000962:IPR012784:IPR020458; KEGG: sfu:Sfum_2611 TraR/DksA family transcriptional regulator; PFAM: zinc finger DksA/TraR C4-type; SPTR: A0LLI7 Transcriptional regulator, TraR/DksA family; TIGRFAM: RNA polymerase-binding protein DksA; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA" /codon_start=1 /transl_table=11 /product="TraR/DksA family transcriptional regulator" /protein_id="YP_003806423.1" /db_xref="GI:302341894" /db_xref="GeneID:9492902" /translation="MDEQQLQFFKELLEERLVELRREAESTVAGMTDDKENLPDPTDR AALESDRNFLLRIRDRERKLMSKIEEALERIADGSFGICESCGEEIGIDRLKARPVTT QCIECKKKQEAGEKIRSI" misc_feature complement(518981..519310) /locus_tag="Deba_0456" /note="Prokaryotic dksA/traR C4-type zinc finger; Region: zf-dskA_traR; cl00755" /db_xref="CDD:193930" gene complement(519398..519865) /locus_tag="Deba_0457" /db_xref="GeneID:9492903" CDS complement(519398..519865) /locus_tag="Deba_0457" /note="COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: krh:KRH_05920 molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; SPTR: B2GIJ0 Molybdenum cofactor biosynthesis protein MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein C" /protein_id="YP_003806424.1" /db_xref="GI:302341895" /db_xref="GeneID:9492903" /translation="MSLSHLDEKGHAHMVDVGAKAPTRRQALARAEVRLAPETLVLLA EGGLPKGDALAVARIAGIMAAKRAPELIPLCHPLPLSAVSVELSLSEGGVVIEASAAT TAQTGVEMEAMTAAGVAALALYDMVKGVDRAAEIVSLRLLEKSGGKSGVWRRG" misc_feature complement(519416..519826) /locus_tag="Deba_0457" /note="MoaC family. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the...; Region: MoaC; cl00242" /db_xref="CDD:185858" misc_feature complement(order(519425..519460,519614..519634, 519638..519712,519815..519826)) /locus_tag="Deba_0457" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:29624" misc_feature complement(order(519467..519475,519650..519664, 519710..519718)) /locus_tag="Deba_0457" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29624" misc_feature complement(order(519482..519484,519491..519493, 519524..519526,519533..519541,519548..519550, 519638..519643,519647..519649,519668..519670, 519716..519718)) /locus_tag="Deba_0457" /note="putative active site [active]" /db_xref="CDD:29624" gene complement(519891..521024) /locus_tag="Deba_0458" /db_xref="GeneID:9492904" CDS complement(519891..521024) /locus_tag="Deba_0458" /note="COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR001623:IPR001305:IPR002939:IPR008971:IPR 003095:IPR012724; KEGG: dal:Dalk_3206 chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: C4XRE3 Chaperone protein dnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ" /codon_start=1 /transl_table=11 /product="chaperone protein DnaJ" /protein_id="YP_003806425.1" /db_xref="GI:302341896" /db_xref="GeneID:9492904" /translation="MKTCYYETLQVSRDADGEEIKKAYRKMAMQYHPDRNPDDPEAEE RFKACAEAYEVLRDPEKRRLYDAYGHDGLKQRTGFNGFGGVEDIFSAFGDIFDGFFGF GGRPSRRGGPQRGHDLRYDLELTLEEAARGKEATFTAGREVRCEQCGGLGQAGGKPPR VCPTCGGHGQVMRSQGFFRIATTCPDCRGAGSKIDDPCPACGGRGRVYHEKQLTVKAP AGIEHGQRLRMRGEGEAGLLGGEPGDLYVQIHIPPHKVFEREGAHLFRELEISMFQAA LGGMVLVETLVDGPQELKISPGAQHGDVLRLKGMGMPNLRDQRRGDLMVRLITRTPTH LSKRQRELLEEAAALGDKQAAPQPEAVAESGGERKKRRIFGLK" misc_feature complement(519945..521024) /locus_tag="Deba_0458" /note="chaperone protein DnaJ; Provisional; Region: PRK10767" /db_xref="CDD:182712" misc_feature complement(520851..521015) /locus_tag="Deba_0458" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cd06257" /db_xref="CDD:99751" misc_feature complement(order(520872..520877,520884..520889, 520896..520898,520923..520931)) /locus_tag="Deba_0458" /note="HSP70 interaction site [polypeptide binding]; other site" /db_xref="CDD:99751" misc_feature complement(520410..520592) /locus_tag="Deba_0458" /note="DnaJ central domain; Region: DnaJ_CXXCXGXG; cl14908" /db_xref="CDD:196869" misc_feature complement(519999..520238) /locus_tag="Deba_0458" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" gene complement(521073..521429) /locus_tag="Deba_0459" /db_xref="GeneID:9492905" CDS complement(521073..521429) /locus_tag="Deba_0459" /note="InterPro IPR006110:IPR003716; KEGG: sfu:Sfum_1758 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; SPTR: A0LJ43 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, omega subunit" /protein_id="YP_003806426.1" /db_xref="GI:302341897" /db_xref="GeneID:9492905" /translation="MARVTIEDCLKRVPNRFALVHMTAQRVRQLRDGAPPLLESKNKE VVQALREIAGGQVYPVSREEAEEGRARAEAEERARLAQASLAATMAQEVAVDQADEPT TNQEQAADTPDDDQTV" misc_feature complement(521259..521429) /locus_tag="Deba_0459" /note="RNA polymerase Rpb6; Region: RNA_pol_Rpb6; cl14651" /db_xref="CDD:189264" gene complement(521669..521986) /locus_tag="Deba_0460" /db_xref="GeneID:9492906" CDS complement(521669..521986) /locus_tag="Deba_0460" /note="KEGG: fre:Franean1_6300 hypothetical protein; SPTR: A8LF02 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806427.1" /db_xref="GI:302341898" /db_xref="GeneID:9492906" /translation="MKKLLIILASAVALAIVGGLSLSFVGGQAMAGYPDPVASAPYRG TIPASQPVGEGTVASETDHWNVPTALQGQAGAAEKQTQPAYHQAPNDADHWNVPNEFG EKK" gene complement(522196..523815) /locus_tag="Deba_0461" /db_xref="GeneID:9492907" CDS complement(522196..523815) /locus_tag="Deba_0461" /note="COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR010523:IPR004096:IPR002078:IPR002197:IPR 009057:IPR003593:IPR020441; KEGG: dal:Dalk_3884 sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; 4-vinyl reductase 4VR; Activator of aromatic catabolism; helix-turn-helix Fis-type; SMART: ATPase AAA; SPTR: B8FCF2 Sigma54 specific transcriptional regulator, Fis family; PFAM: Activator of aromatic catabolism; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; V4R domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806428.1" /db_xref="GI:302341899" /db_xref="GeneID:9492907" /translation="MRAADFRLAELIQRDASTGFPVINDNRLMMIGLGALGRVNQEMI QGLDLELVEAIFTRMGYENGLALGLVLADNYDWDSREELLRAGVAACAMAGVAVAELD ELILEPAGGLRCFRGRWRQSFEAQLQLEGLGPSDRPVCGLLSGLASGLASVALGQEIW VQELYCQAQGHDHCAYEGRPIADWGVDPAELRRRFSLERLDDDMARLRQRLAAAQRDL AAKQAELARLRPAEVTAGGVLHRSKAMGQVLALAAKVAPTASTVLIGGESGVGKEVLA RFIHQRSGRQAEPFLAINCAALPATLLESELFGHVKGAFTGAEADKPGLFLEAGQGTV FLDEIGELPLELQAKLLRALQEKEIRPVGGLKSRPVRARIIAASNRDLAEMVSAGRLR EDLYYRLAVFPLVAPPLRQRREDILLLARHFLEKLAPGHPGLAPATVRKMEAHAWPGN VRELENAVEHAVILAGNELIQPEHLPQAVGGAVGAADWLAGDMPNQDELLRRYTKLVL QATGGNRSQAARMLGIGVNTLWRRLKQWDMG" misc_feature complement(<523621..523794) /locus_tag="Deba_0461" /note="Activator of aromatic catabolism; Region: XylR_N; pfam06505" /db_xref="CDD:115177" misc_feature complement(523276..523464) /locus_tag="Deba_0461" /note="V4R domain; Region: V4R; cl08369" /db_xref="CDD:158277" misc_feature complement(522199..523077) /locus_tag="Deba_0461" /note="phage shock protein operon transcriptional activator; Provisional; Region: pspF; PRK11608" /db_xref="CDD:183227" misc_feature complement(522619..523047) /locus_tag="Deba_0461" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(522997..523020) /locus_tag="Deba_0461" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(522679..522681,522805..522807, 522994..523017)) /locus_tag="Deba_0461" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(522802..522819) /locus_tag="Deba_0461" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(522622..522624) /locus_tag="Deba_0461" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(522208..522327) /locus_tag="Deba_0461" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(523837..524490) /locus_tag="Deba_0462" /db_xref="GeneID:9492908" CDS complement(523837..524490) /locus_tag="Deba_0462" /note="KEGG: GL12930 gene product from transcript GL12930-RA; SPTR: B5DN74 GA22861" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806429.1" /db_xref="GI:302341900" /db_xref="GeneID:9492908" /translation="MRAAARKIILTALAVALGLILGGLALAQVGNPFGGYNQAPTTPQ SPYPAVGGNTQQQPQQQPQYQQPYQQQPQQQQQVQPGQRFTDAMGQFRLNLPQGMTGT VATYNFAMPGANINLTLSATMNAQLFQATDQAMTGNLQQMGAQIKSEGAVTYANIQCR YIVASMTDRASGQQFDIHTVLMPGANLMLQAYCPAQSTSLAQDVMDAMLKSLELARR" gene 524679..526577 /locus_tag="Deba_0463" /db_xref="GeneID:9492909" CDS 524679..526577 /locus_tag="Deba_0463" /note="COGs: COG1750 serine protease; InterPro IPR008269:IPR020568; KEGG: pfu:PF1438 hypothetical protein; PFAM: peptidase S16 lon domain protein; SPTR: Q8U0Z2 Putative uncharacterized protein; PFAM: Lon protease (S16) C-terminal proteolytic domain" /codon_start=1 /transl_table=11 /product="peptidase S16 lon domain protein" /protein_id="YP_003806430.1" /db_xref="GI:302341901" /db_xref="GeneID:9492909" /translation="MPHFLSSRRWGFFVAVVVALACLAAPPAAQADQTRKVWPLFYGT DDEGKPTGRAMEMTVGLAPSNVGEARVGFFESEFMGAGEQWRAAGWMASVVSALYAGK PPSLWRVYFDVPGNIDGPSAGGLMTSTVLSLVLGQPMLPDVTMTGTINPDGSIGPVGG IYYKLAGAKAAGMRKVLIPAGGSTEKLGDGKSADLIARGRELGLQVVPVADVAEAYQH LTGRALATLPDDGRAFRLPTRTNEALQNSYRRWAAKYDEATANMRANSAAVPKRFHPR LQKIWDSAQAQRAKAQAALNQGAPSAAMQLMYGAAVTADIGAYLCHLYIGHDRGGVDG MARVLSGFLISDQFLNQFRAKLSAQRAHSVTDLITLAEAFAYYDAAVGVHFNSGMILG RLQKEKDPEKVFVILEQATLGEAMARNFSHFVDDLLHMGMRYPGPKLPAGKALADWAQ AMRLAAGGNLGYIKKAIIEPAAEELGVAPAVLMNKVLGNDYHYLLANATYFASQAMAG GMPDDTSKGAALLGGSVASFGLSSMVVAKYYSLGAQTNAEGELVKLGDPGRLEPMLGS ARAQLRQVILAAQAQGCTPIVPIFHLQTADYMARADMSLSDRLTGMGECWMGSTFGRL MTALGRRP" misc_feature 524808..>525458 /locus_tag="Deba_0463" /note="Archaeal serine proteases [General function prediction only]; Region: COG1750" /db_xref="CDD:31936" misc_feature <525030..525335 /locus_tag="Deba_0463" /note="Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362" /db_xref="CDD:191262" gene complement(526582..527061) /locus_tag="Deba_0464" /db_xref="GeneID:9492910" CDS complement(526582..527061) /locus_tag="Deba_0464" /note="InterPro IPR004360; KEGG: mac:MA0108 glyoxalase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C0EBN9 Putative uncharacterized protein; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily" /codon_start=1 /transl_table=11 /product="glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_003806431.1" /db_xref="GI:302341902" /db_xref="GeneID:9492910" /translation="MAMKFMGAAIMVADVARSRQFYEGLLGQAVEMDNGPHVAFAGGF SIWQKDHAHEVIFGGPEAGAQAMGRANLELYFESETLEQDCQALAVAGVEVIHGLTEA PWAQMTARFKDPDGHIVELAEPLPLVVRRLLGQGLSLEDVARRTSMDVAIVRYMAEQ" misc_feature complement(526687..527055) /locus_tag="Deba_0464" /note="This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632" /db_xref="CDD:196803" misc_feature complement(order(526702..526704,526708..526710, 526732..526734,526843..526845,526921..526923, 526927..526929,526951..526953,527029..527031, 527041..527043)) /locus_tag="Deba_0464" /note="active site" /db_xref="CDD:176657" misc_feature complement(order(526702..526704,526843..526845, 527041..527043)) /locus_tag="Deba_0464" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176657" gene complement(527139..529091) /locus_tag="Deba_0465" /db_xref="GeneID:9492911" CDS complement(527139..529091) /locus_tag="Deba_0465" /EC_number="6.2.1.16" /note="COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873:IPR005914:IPR020845; KEGG: noc:Noc_2047 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q3J9I9 Acetoacetyl-CoA synthase; TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-binding enzyme; TIGRFAM: acetoacetyl-CoA synthase" /codon_start=1 /transl_table=11 /product="acetoacetyl-CoA synthase" /protein_id="YP_003806432.1" /db_xref="GI:302341903" /db_xref="GeneID:9492911" /translation="MPTPLWTPSPERVARANLSRFIAFVNQRHGLDLAGYAALHAWSI DQRADFWRAVWDFCEVRASRPAEAVTQNPEAMPGARWFVGARLNFAENLLRQPDDRPA LIFCNEIGHQRRLSRAQLLAASGRLSRALAAVGVGPGDRVAGFMPNIPETVIGMLATA SLGAIWSSCSPDFGFQGVMDRFGQIRPKVMLCADGYPYGGKRFDCLERAALVGARIDS LERIVVAPYMTDAPDLSAAPKAIAYDDFVAGHGDGPPAFAQLPFDHPLYIMYSSGTTG APKCIVHGAGGTLLQHLKEHALQCDLTADDTLFYFTTCGWMMWNWLVSALAVGAAVAL YDGSPFHPGPEVLWRMSQEEGVSVFGTSARYLAALEKSGLRPAEAFDLGRLKAVLSTG SPLAPEQFDWAYQNIKADMCLSSISGGTDIISCFAGGNPIGPVYPGQLQAPGLGMAVQ AWDENGRALWGQKGELVCVKPFPSMPVGFWNDPDDEKYQSAYFRRFAGVWHHGDYCEM TPEGGVIIHGRSDATLNPGGVRIGTAEIYRQVEGLAQVADSLVVGQRWRGDERVILFV KMAPGHQLDQATAQAIATRIRQNTTPRHVPAKILAVDDIPYTISGKKVEMAVRNVIEG RPVTNKDALANPQALALFADRPELAE" misc_feature complement(527142..529091) /locus_tag="Deba_0465" /note="acetoacetyl-CoA synthetase; Provisional; Region: PRK03584" /db_xref="CDD:179600" misc_feature complement(528777..529001) /locus_tag="Deba_0465" /note="Domain of unknown function (DUF3448); Region: DUF3448; pfam11930" /db_xref="CDD:192884" misc_feature complement(527256..528656) /locus_tag="Deba_0465" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(529183..530154) /locus_tag="Deba_0466" /db_xref="GeneID:9492912" CDS complement(529183..530154) /locus_tag="Deba_0466" /note="COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dol:Dole_2556 beta-lactamase domain-containing protein; SPTR: A8ZWM9 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="beta-lactamase domain-containing protein" /protein_id="YP_003806433.1" /db_xref="GI:302341904" /db_xref="GeneID:9492912" /translation="MPEEIMPGVFRIKVTLPESPLKYLNSYVFKSDQRSLVVDTGLNR PECRQALEAGLAEIGVAPAGADYFITHLHADHFGLVGAMAGPESLVYFNQPDADILNS GLGWESVIEYSARNGFPADTLRPAIEKHPGKHFHSPRIPAMTILADGDEIAYGDYRLR ALHTPGHTPGHLCLYDPAARLLVAGDHLLIDITPNIQCMSDDANPLGDYLASLEKTAA LDVALVAPGHRRLWNDHRARIDELRAHHARRVEEAFEALRGGPLDAFQVAARMTWDIK CDSWEDFPLAQKWFAQAEALSHLRYLERRGEIDRLDEGGLTIFEIAA" misc_feature complement(529471..530082) /locus_tag="Deba_0466" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 530373..531575 /locus_tag="Deba_0467" /db_xref="GeneID:9492913" CDS 530373..531575 /locus_tag="Deba_0467" /note="COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027:IPR000103; KEGG: dal:Dalk_2354 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: B8FAW1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulfide oxidoreductase" /protein_id="YP_003806434.1" /db_xref="GI:302341905" /db_xref="GeneID:9492913" /translation="MARYVIIGNGVAGATAAEKILAAKSGAQLTIFTSEDAPFYYRPR LPEFIAGQSELAKFTLHDAAHYAQRGVDLRLATTVASVDPAARVVHDAAGGAVAYDEL LLACGARPFIPPVAGADKAGVTALRDIADARRIVEMAGQSQEVVLVGGGLLGLEAGAA LVRLGLKARVVEFFERLLPRQMDARGAAKLQAHLEAMGFEFYLGQKAKEITGQAKADG LLLESGQHLPGGLILFSAGVRPNLDLARQMGLDIGQAVKVDDRMATDMPGVWAAGDVA EHRGRYYGVWPAAQAQGAVAGANMAGGHELYQGTIVSNALKVVGVDLVAGGDIDAEGK LPAAVFEDERVYRKIVLDEGQIKGFIFYGQAQGARQCQKAMEQGRDVAEHAQAMTAKD FDFDRLLG" misc_feature 530379..>531521 /locus_tag="Deba_0467" /note="NAD(P)H-nitrite reductase [Energy production and conversion]; Region: NirB; COG1251" /db_xref="CDD:31443" misc_feature <530880..531047 /locus_tag="Deba_0467" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 531596..532090 /locus_tag="Deba_0468" /db_xref="GeneID:9492914" CDS 531596..532090 /locus_tag="Deba_0468" /note="KEGG: kse:Ksed_04660 major facilitator superfamily transporter; SPTR: B0BI40 Putative integron gene cassette protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806435.1" /db_xref="GI:302341906" /db_xref="GeneID:9492914" /translation="MRASRWLCLLLAAALLGLGSGPALADARSEIKDFLRRHNGRYQL ADAPALLGLLAQHPDAVSIGPGPGQTFRGRQAIQGALLLGLALVRAVDVRFADNMVIS PRGDLAWLGGELRLRAQTHDGRIVDAPARLSAVLVRENGQWRLFQASANLPPELSAPP PARR" gene 532175..532984 /locus_tag="Deba_0469" /db_xref="GeneID:9492915" CDS 532175..532984 /locus_tag="Deba_0469" /EC_number="3.6.1.22" /note="COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding; InterProIPR015375:IPR015376:IPR000086:IPR015797:IPR 020084; KEGG: scl:sce4370 NADH pyrophosphatase; PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; PRIAM: NAD(+) diphosphatase; SPTR: A9F2Z4 NADH pyrophosphatase; PFAM: NADH pyrophosphatase zinc ribbon domain; NUDIX domain" /codon_start=1 /transl_table=11 /product="NAD(+) diphosphatase" /protein_id="YP_003806436.1" /db_xref="GI:302341907" /db_xref="GeneID:9492915" /translation="MSARLSGPADGPAYWFIFSGPKLLLRGGPTIEAPFVAAPEALGL ALEQIMALGQFLGRPAFCAQAAADAPAPEGMFWRILLGLDQKAGPELFWKAGEALYAQ HWLRRSRHCGLCGGPTSLAPDEEPLVMRCQHCGGLHYPRLSPAVIVAIEHEGRILLAN NRRHPPQWFSVLAGFVAPGESLEHAVQREVAEEVGLAVADIEYFGSQPWPFPDSLMVA FRCRALDDQIRVDGKEIGEARWFAPPHMPSRPHGVTIAARLIDDYLARHGG" misc_feature 532199..532972 /locus_tag="Deba_0469" /note="NADH pyrophosphatase; Reviewed; Region: nudC; PRK00241" /db_xref="CDD:178944" misc_feature 532490..532591 /locus_tag="Deba_0469" /note="NADH pyrophosphatase zinc ribbon domain; Region: zf-NADH-PPase; pfam09297" /db_xref="CDD:150084" misc_feature 532604..532972 /locus_tag="Deba_0469" /note="NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for...; Region: NADH_pyrophosphatase; cd03429" /db_xref="CDD:72887" misc_feature order(532607..532609,532691..532699,532799..532801, 532808..532810,532814..532816,532820..532822) /locus_tag="Deba_0469" /note="putative NADH binding site [chemical binding]; other site" /db_xref="CDD:72887" misc_feature order(532694..532699,532703..532705,532739..532741, 532748..532753,532799..532801,532808..532810, 532814..532816,532820..532822) /locus_tag="Deba_0469" /note="putative active site [active]" /db_xref="CDD:72887" misc_feature 532694..532762 /locus_tag="Deba_0469" /note="nudix motif; other site" /db_xref="CDD:72887" misc_feature order(532739..532741,532748..532753,532874..532876) /locus_tag="Deba_0469" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:72887" gene 532991..533533 /locus_tag="Deba_0470" /db_xref="GeneID:9492916" CDS 532991..533533 /locus_tag="Deba_0470" /note="KEGG: bpy:Bphyt_2747 thioesterase superfamily protein; SPTR: B2SZF3 thioesterase superfamily protein; PFAM: thioesterase superfamily" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003806437.1" /db_xref="GI:302341908" /db_xref="GeneID:9492916" /translation="MYVWLRLARMALGAPLKKRLAPLETATIGFVTGPQDIDPYLHMN NGRYLTIMDVGRIDLLIRAGLWKACRSRGWRPMMLASTVRFLRPLGLWSRFTQTSRIV GWDRTVLFIDQGFVCQGRLATRCLAAMVVHDPAAGRRVNIDELLAAMGHHDPSPALPP ELDAWRQWLESAGRADAQAT" misc_feature 533090..533389 /locus_tag="Deba_0470" /note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active...; Region: 4HBT; cd00586" /db_xref="CDD:48031" misc_feature order(533147..533149,533216..533218,533222..533224, 533303..533314) /locus_tag="Deba_0470" /note="active site" /db_xref="CDD:48031" gene complement(533521..536013) /locus_tag="Deba_0471" /db_xref="GeneID:9492917" CDS complement(533521..536013) /locus_tag="Deba_0471" /note="KEGG: ote:Oter_1689 cell wall surface anchor family protein; SPTR: B1ZUT9 Cell wall surface anchor family protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806438.1" /db_xref="GI:302341909" /db_xref="GeneID:9492917" /translation="MDQDITYSVSIKPDNDIRKIVAEQIKTITDYVAKLTEKPFENLG VSLNKVSTTAVQGTLSAIFNGEMDKIKGIWETTWSGMGKVVTSLFDDILGEIATRIVD SLGGALKSLFSPLGDWLGGMLKNVGASALSSVYGLFDGAVDLFTGKGLLASVSKTLGL NTLVSNVGSWLGLGSSAAGATAAGAAAITEAAAAFEAALTGTAVADAVTSALVAAGPW AEATAITEAVTAFEAALSGGSAATAAASSAATNIAISTSAADAASAAFSSAMAEASAS IESAFSGGLSTMASATNAAGTAAASTAAAADAVTAALMAAGPGAEAAAIAEATAAFEA ALSGGSAATAASTSAAASAGGLGAMGTTAVLAAPFAIGELVAAIMGETGPISAVIESI FGETNSPYTAQDAQASVRAGLESLSAGDQTGAAVLSWMTSDSGAGSLAAYAGWDTEDI RAMTQALGPMEAAMFDAQLISDQFSQALDNISTSLNHDLETYNQAGEAIWRMASEMGL SQAQIDALATSGQTMNQVVAAMATTAGDVRLAAVGMGEAIARAAGQTGLAFEQAQQFA AQAETLWAALQSGALGAEQAGAQLTALGQAMGLDQTQAESLTSRVDNLFAAMNQASGG SAELSAQLANARTAFGSLDNTIKVVETSTDSSTDSFLGLAEALSFANDASFDSGWLDY QNLLQGAAASAQDLAGQLADVAQAANSAQNGLDGVVIESMAGGFGVYHDGGLVGVESW PRHHGGLLPDETPAILQRGEAVIRRASVNAQTLPLLQEINRSGQAPPSAQNVSLHVEV HGNVMGDNESMEELARLIDQRLRRIAGGRYVA" gene 536065..536898 /locus_tag="Deba_0472" /db_xref="GeneID:9492918" CDS 536065..536898 /locus_tag="Deba_0472" /note="KEGG: sus:Acid_7814 YVTN beta-propeller repeat-containing protein; SPTR: Q01NQ8 40-residue YVTN family beta-propeller repeat protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806439.1" /db_xref="GI:302341910" /db_xref="GeneID:9492918" /translation="MMSNKKMRQNNSRARRRILENSGWFVAGMLAMALVWLQLGARPG VAADPEGVITAQSFRLVDDNGVVRGVLGFSREEYPMLVLCDNTGNKQAIVCSEPDGPS IYLESADYKPMVIIKAAHDEGPQVFLMGKKPGSVASLSNMTEPTLALSYASDGPMLGL STNEVQAAMAINGGPGKGEIGLAVKHDVGSLIFMNNGRDNGQLALGVTPRWTSVMAKD GDDSGLTLAVRKNRAPAMELTENGRAVWSALGGGAVDDAEMRGLFGGAGSWLNFDKLF K" gene 537298..538122 /locus_tag="Deba_0473" /db_xref="GeneID:9492919" CDS 537298..538122 /locus_tag="Deba_0473" /note="KEGG: mxa:MXAN_6434 hypothetical protein; SPTR: Q1CYG5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806440.1" /db_xref="GI:302341911" /db_xref="GeneID:9492919" /translation="MTISRGMDALKRLELSENARWFVAGLLAMALVWLQLGARPGVAA DPEGVITAQSFRLVDDNGVVRGVLGFSREEYPMLAICDNTGREQVLIGSEPDGPSIYL TSADYKPMITIRAVHDEGPRIFLIGKKPGSVASLSNMTEPTLALSYASDGPMLGLSAS QAQAAMAISGGPGKGEIGLAVKHDFGSLMFMNNGRDNGQLALGVTPRWTSVMAKDGDD SGLTLAVRKNRAPAMEMTENGRAVWSALGGGAVDDAEMRGLFGGAGSGLNFDKLFK" gene 538433..540685 /locus_tag="Deba_0474" /db_xref="GeneID:9492920" CDS 538433..540685 /locus_tag="Deba_0474" /note="COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531:IPR010917; KEGG: wsu:WS1416 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; SPTR: Q7MRE4 HUGA; PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003806441.1" /db_xref="GI:302341912" /db_xref="GeneID:9492920" /translation="MYGRSRQLISTMARPRTALLAALLAVWLVGGLAWAQPAVAATPS ASVTYDIPAGPLGQALARFSEQSGLSLSFDPGLTAGKTTAGLSGSHAPLDALAKLLAG SGLRVAEAGDGRLTLVGDGKPSTTLPGVTVTGQSRQDDPTVHDISTEVLRRTMAKDVA DIFATDPSVAIGGGGRNAQRLYLRGIESSNLNVTIDGARQGRSLHQHRGDAGGIDPEI LKRVEVRTGPAADNGPGALGGGIVFETVDAQDKLVDGKSVGATIRGGYATADESLLGG ATAYGVYDQHFGLLAHVSGTNFEDYSIGEGGRAPNTAGQDRDYFAKFSMLDLAGHSLR LSAERNTTDGHYVWGSTGSDMGYPLDTSEIIYAVSQRDTYTLDHRYNPASQWIDTKVN LYFNDNSVDNQSADTKYLSQETGGSARNTFTFDLGPTAHRLSVGGDVVAEDSIGELAD GSEKNNKSSNLGLFIQDRLSLGPLGLSFGARLDSYDSDFGPYNINGTEVSPNVGATYE LIQGLTAFANYGQAVRGSGIIPGSWLTNINAKTVFKITEPESSRQIDGGLRYLRDSLF LADDRFNIAGTVFNTRLENSIEAVGMRGVINELVNGETIIANGWELRAGWGFGPFDTT MAFAHVDTEDDDGNPIGVVRRKAASTGDRFVWDNRYQPIEGVVLGYTLTAVGRLKDVP SGQPERPGYVLHAIQAQWQPVWTPGLTLQLVVDNIFDVRYADQTSIYTTTGVVDEPGR DIRLGFTYSF" misc_feature 538820..540682 /locus_tag="Deba_0474" /note="TonB-dependent heme/hemoglobin receptor family protein; Region: TonB-hemin; TIGR01785" /db_xref="CDD:162536" misc_feature 538856..540682 /locus_tag="Deba_0474" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(538856..538885,538913..538942,538973..538990, 539009..539032,539078..539110,539141..539167) /locus_tag="Deba_0474" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(539630..539632,539657..539659) /locus_tag="Deba_0474" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 540736..541560 /locus_tag="Deba_0475" /db_xref="GeneID:9492921" CDS 540736..541560 /locus_tag="Deba_0475" /note="COGs: COG2875 precorrin-4 methylase; InterPro IPR000878:IPR014777:IPR014776; KEGG: ppd:Ppro_1250 uroporphyrin-III C/tetrapyrrole methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Q1JX26 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases" /codon_start=1 /transl_table=11 /product="uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase" /protein_id="YP_003806442.1" /db_xref="GI:302341913" /db_xref="GeneID:9492921" /translation="MTRHDIAKGLHAMLLGLMILLLAAAPALAQESAQAKGRLYLVGL GAGDPDNMTIRAQKTIAAADVIFAMKGVQERYADLLAGKELHEAGHGLFMKRSHRLVS NESFAAQEENARKVIRQAVAQGKTVAILDNGDPMIFGPHAGYLEEFKDLNPEVIPGLS SFNAANAALQKSVTSGKKSHAAILTAAMRDGEGLAKLAKSQSTMVFFTMRLDLPKVVE QLKKSYPGNTPMAIVFHAGSRQEQKVLLATLDTIVEKAGDKRLPFEHLIYIGDFLN" misc_feature 540841..541557 /locus_tag="Deba_0475" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene complement(542455..542784) /locus_tag="Deba_0476" /db_xref="GeneID:9492922" CDS complement(542455..542784) /locus_tag="Deba_0476" /note="KEGG: mmi:MMAR_5339 PE-PGRS family protein; SPTR: B2HLL1 PE-PGRS family protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806443.1" /db_xref="GI:302341914" /db_xref="GeneID:9492922" /translation="MAINGGPGKGEIGLAVKHDFGSLMFMNNGRDNGQLALGVTPRWT SVMAKDGDDSGLTLAVRKNRAPAMELTENGRAVWSALGGGSVDDAELRGLFGGAGSWL NFDKLFK" gene complement(543390..544214) /locus_tag="Deba_0477" /db_xref="GeneID:9492923" CDS complement(543390..544214) /locus_tag="Deba_0477" /note="KEGG: esi:Exig_2649 hypothetical protein; SPTR: D0GPN5 Outer membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806444.1" /db_xref="GI:302341915" /db_xref="GeneID:9492923" /translation="MTTSRGMDALKRLELSENARWFVAGLLAMALVWLQLGARPGVAA NPEGVITAQSFRLVDDNGVVRGVLGFSREEYPMLLLCDTNGREQLMLGAEPVGPVIYL LDANTEPMAFIKSVHGVGSYISLMNKKTDTVIGMANTNAPVMHMRNGANGPVLSMAAH GNQSVIQISGGPGKGEIGLAVKHDFGSLMFMNNGRDNGQLALGVTPRWTSVVAKDGDD SGLTLAVRKNRAPAMEMTENGRAVWSALGGGSVDDAELRGLFGGAGSGLNFDKLFK" gene complement(545108..545887) /locus_tag="Deba_0478" /db_xref="GeneID:9492924" CDS complement(545108..545887) /locus_tag="Deba_0478" /note="COGs: COG0287 prephenate dehydrogenase; InterPro IPR003099:IPR016040; KEGG: dal:Dalk_1765 prephenate dehydrogenase; PFAM: prephenate dehydrogenase; SPTR: B8FFQ7 prephenate dehydrogenase; PFAM: prephenate dehydrogenase" /codon_start=1 /transl_table=11 /product="prephenate dehydrogenase" /protein_id="YP_003806445.1" /db_xref="GI:302341916" /db_xref="GeneID:9492924" /translation="MAESDFADFEIGIIGGSGRMGRWLVDYLQGLGCRARVAASRHAQ AERDLAQNCHVLVLAVPVGQMTTVMAELGPLTRPDGLVVDLCSLKETPLQAMLAHARG QVVGCHPLFGPTANGLDGQTVFLCPGRGQSWLERLQNFLHTQNANVVSLTATEHDKLM AIVQSLRHILVAALGQTLANSDINLKAILPMAGPWFNHLAQLLQNQAAQPASLYAHLA TQNPHALAPAQALRQAIDNITQAIQDNDENALIKYLDFSFM" misc_feature complement(545123..545836) /locus_tag="Deba_0478" /note="Prephenate dehydrogenase [Amino acid transport and metabolism]; Region: TyrA; COG0287" /db_xref="CDD:30635" misc_feature complement(<545300..545740) /locus_tag="Deba_0478" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(545891..547123) /locus_tag="Deba_0479" /db_xref="GeneID:9492925" CDS complement(545891..547123) /locus_tag="Deba_0479" /note="COGs: COG0077 prephenate dehydratase; InterProIPR020822:IPR001086:IPR002912:IPR008242:IPR 002701:IPR018528; KEGG: pca:Pcar_1887 chorismate mutase-P and prephenate dehydratase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; SPTR: Q1K0T9 Chorismate mutase; PFAM: prephenate dehydratase; ACT domain; Chorismate mutase type II" /codon_start=1 /transl_table=11 /product="prephenate dehydratase" /protein_id="YP_003806446.1" /db_xref="GI:302341917" /db_xref="GeneID:9492925" /translation="MTDRTPFFAGLTLGLAGGRNRRPNQKAAHLRPVYPPRQENHDMV ADQINQQRQRIDEIDRQIVDLLNERALCAMAIGRSKNAGGLPEFAPEREQAIIDALER HNQGPLSGQSLRGIFAEIISACRAVQRPLRVAFLGPATTFSHQAAMRHFGSSCEFAPH RSIIDVFHEVERSHAQVGVVPVENSSEGQVSVTLDLFLESDLNVCGEIYARISQVLMS KEAAIEGIQRVYSHPQALNQCRNWLARNMPMATLIESTSTAAAAQKAAQEDGSAAVGS ILAARQGGLNALAIDIQDNPHNTTRFFVIGRQKCPPTGNDKTSILFVTHHKPGMLFSA LKHFADSGINLTRIESRPLKNTPWEYVFFIDMAGHVEDAQVRQVINTLDEETRLLKVL GSYPMGEPEAWNGAEQAV" misc_feature complement(546731..546931) /locus_tag="Deba_0479" /note="Chorismate mutase type II; Region: CM_2; cl00693" /db_xref="CDD:186149" misc_feature complement(545936..546736) /locus_tag="Deba_0479" /note="Prephenate dehydratase [Amino acid transport and metabolism]; Region: PheA; COG0077" /db_xref="CDD:30426" misc_feature complement(546194..546727) /locus_tag="Deba_0479" /note="Prephenate dehydratase; Region: PDT; pfam00800" /db_xref="CDD:144409" misc_feature complement(545936..546175) /locus_tag="Deba_0479" /note="C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905" /db_xref="CDD:153177" misc_feature complement(order(546068..546079,546128..546139)) /locus_tag="Deba_0479" /note="putative L-Phe binding site [chemical binding]; other site" /db_xref="CDD:153177" gene complement(547127..548017) /locus_tag="Deba_0480" /db_xref="GeneID:9492926" CDS complement(547127..548017) /locus_tag="Deba_0480" /EC_number="2.5.1.54" /note="COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR013785:IPR006268; KEGG: sat:SYN_01940 phospho-2-dehydro-3-deoxyheptanoate aldolase; PFAM: DAHP synthetase I/KDSA; SPTR: Q2LUE1 phospho-2-dehydro-3-deoxyheptanoate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase" /codon_start=1 /transl_table=11 /product="phospho-2-dehydro-3-deoxyheptonate aldolase" /protein_id="YP_003806447.1" /db_xref="GI:302341918" /db_xref="GeneID:9492926" /translation="MLAAKINGTEQAMTPVIDPEACKPRAPRKLHAREQHPEDTVVRV GDVAIGGGAFVVIAGPCSVESEEQMVETAQAVRQGGGAILRGGAYKPRTSPYSFQGLG PNGLTLLGLAGKATGLPYVTELMDAEDLPLLEEQADMIQIGARNIQNFSLLKKVGRSS KPVLLKRGLMTTVDELLMSAEYILDGGNQSVVLCERGIRTFETATRNTLDLSVVPVLK ERTHLPVIVDPSHAVGKRRYVAPMAKAALAVGADGIMVEVHCRPEAALCDGEQSLHPS EFAELMAQLRGMAAMCGRTI" misc_feature complement(547160..547933) /locus_tag="Deba_0480" /note="NeuB family; Region: NeuB; cl00496" /db_xref="CDD:186036" gene 548523..549653 /locus_tag="Deba_0481" /db_xref="GeneID:9492927" CDS 548523..549653 /locus_tag="Deba_0481" /note="COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR001041:IPR001450:IPR006963:IPR006656:IPR 009051:IPR017896:IPR017900:IPR006655; KEGG: dds:Ddes_1544 molybdopterin oxidoreductase Fe4s4 region; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8J119 Molybdopterin oxidoreductase Fe4S4 region; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; 4Fe-4S binding domain; Molybdopterin oxidoreductase Fe4S4 domain" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_003806448.1" /db_xref="GI:302341919" /db_xref="GeneID:9492927" /translation="MAEAIFNGRRVSYQPGETILEAARRAGVEIPTLCHMKDFSTSGQ CGVCVVELAGSGHIKQACRTPLEEGMVVATDSPKVREARANALRRLVASGAHNCLVCD IGGDKWQELQMEVMAQPWHDTVCPAWGDCRLQDLIIRYGVSMRGVEPKIRQHPLDDDQ PMIVRDFSRCIKCGRCVSACNDVQVNLAIAPPDEAALKAGLLESDWRPVVDYAKCTHC GQCIQACPVGALFEKKAYGQALANELQKVRTTCPYCGVGCQIWLHVKDGRIFKTSAVE DAEPNKGRLCVKGRFGYDFIYSEDRLTTPLIREGEGFREASWDEALDLVASKFKQIIA ESGPDALAGVSCARSINEDSYNMQKLFRAVIGTNNIDHCART" misc_feature 548541..549221 /locus_tag="Deba_0481" /note="bidirectional hydrogenase complex protein HoxU; Validated; Region: PRK07569" /db_xref="CDD:181037" misc_feature 548541..548738 /locus_tag="Deba_0481" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(548610..548615,548622..548624,548649..548651, 548655..548666,548703..548708) /locus_tag="Deba_0481" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(548622..548624,548655..548657,548664..548666, 548706..548708) /locus_tag="Deba_0481" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature 549144..549212 /locus_tag="Deba_0481" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature 549264..>549647 /locus_tag="Deba_0481" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" gene 549702..551291 /locus_tag="Deba_0482" /db_xref="GeneID:9492928" CDS 549702..551291 /locus_tag="Deba_0482" /note="COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterPro IPR006656:IPR006657:IPR009010; KEGG: sfu:Sfum_0031 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; SPTR: A0LE82 Molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_003806449.1" /db_xref="GI:302341920" /db_xref="GeneID:9492928" /translation="MTNNFADFAKAKMFLVIGSNMTEAHPVASTFLKNAVQKGAGLIV ADPRRTALAAMADEHMQLKVGSDIALLNGLMHVLITEEIYDRRYVESCTVEFDKLKAT VMEYPPERAAELSGVPAETIVRVARKLAATKPAMLIYTLGITEHTCGVNNVLSTANLQ MLLGNVGFECGGVNPLRGQNNVQGACDMGALPNVYPGYQKVIDPAAKAKFEKFWGVEH LDDKNGLMMPAMFEGLVTGKVRGMWIFGENVANTEPDIHHVEHQLASAEFLVCSDIFP TETTRFAHVILPSAAWSEDDGTFASSERRVNRVRKVSTPPGQAKPNWWMFKEVAARMG QAWSSNSSQEIWDNEFSVVAPAFTGIKYSRIEGDGLQWPCTSLEHPGTQVMHKDGCFT CGLGNFKPVEWTPPAEVTDAEYPYVLSTGRRLYHYHTRTQTGRCGGLNDLLGEETADI SPADAAKMGVRSGDKLRLASRRGEVVVSARVTAEVPPGMVWMAFHFREGCANWLTNPA FDPVSQTAEYKACAIKMAPAA" misc_feature <549702..550916 /locus_tag="Deba_0482" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature order(549750..549755,549759..549761,549768..549773, 549834..549842,549900..549902,550119..550121, 550437..550445,550515..550523,550530..550532, 550566..550571,550584..550586) /locus_tag="Deba_0482" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:73198" misc_feature 550935..551282 /locus_tag="Deba_0482" /note="Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H)...; Region: MopB_CT_Formate-Dh_H; cd02790" /db_xref="CDD:30322" misc_feature order(550959..550973,550977..550988,551181..551183, 551205..551207,551253..551258) /locus_tag="Deba_0482" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:30322" gene complement(551368..553668) /locus_tag="Deba_0483" /db_xref="GeneID:9492929" CDS complement(551368..553668) /locus_tag="Deba_0483" /note="InterPro IPR007844:IPR016160; KEGG: noc:Noc_2265 hypothetical protein; PFAM: AsmA family protein; SPTR: Q3J8X3 Putative uncharacterized protein; PFAM: AsmA family" /codon_start=1 /transl_table=11 /product="AsmA family protein" /protein_id="YP_003806450.1" /db_xref="GI:302341921" /db_xref="GeneID:9492929" /translation="MARKIVKWLLLAALALAVLAALALAIVPALLPLEDMAVQAIHEH TGRQARVESIDLRLLGGAELEVKGLRIDDLPRFGGRPLLKLDRLLVEFGLLPLLTRKV DLGQVLVDGLELSLVRDQQGALNTDFAAAQPPADQPAAPPETPPAEAPAADEPHAGSL IVRRLAISGSTIFLANLATGSQASLPLQKAELTTEFDAQTPLIQAQLAMPGLGIEASG GQASAPAELKAEIDLAQLGQRLIVVWPGLELAGELKLAAAAVGPDNQKVINASCRALN LRISSPTPGQAPFELADADLTLAMVADQSARSLQLESLSLRSQAAGYEMKAHGLLAPG RAELVMGQKTDLAKLYRVLANFLPAGLTLAGQAEKEFTLRGDEKKFTLDFQSRADGLE VNTPGLARPFRQAQLISQGKLIVDAQGNMVIDKLSLECPDAHLEISGKAAVEPKKTAH LTLASKIIDLDAILPLLQALDQNTTATPPKAPPAATARPAAPAKPADQAAQLAKILQE IDIDIELNLAHVAVGGHHLLGVNGRLLAGQGQAAIEGLKCGLLDGALNLDAKLICAGN QEPKSNINLTATGLRIDKERYQHLKKNVALFYLPLSAIRGVFDIQAQLAAQGLDVETI KASATGKGGIQAPRGVEIDIDALGRMTGGDFLADIVRDNVPGQYGSLDGSYTLAKGRL DYQLLFADSPERIDVKLAGHTNLLDRAITAKLLLSGQGLGRDLRPFLGPDGAFPLELG GTADKPTAVLNIKEAAGGLLRGLFNR" misc_feature complement(<553285..553566) /locus_tag="Deba_0483" /note="AsmA family; Region: AsmA; pfam05170" /db_xref="CDD:147383" gene 554007..554480 /locus_tag="Deba_0484" /db_xref="GeneID:9492930" CDS 554007..554480 /locus_tag="Deba_0484" /note="KEGG: gsu:GSU0840 hypothetical protein; SPTR: Q74EW9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806451.1" /db_xref="GI:302341922" /db_xref="GeneID:9492930" /translation="MKLLVYVSVMNEDWVRLGAAIDDSAPRECVELFRRIDGLRERLS QPIQRPAVLVLVAATEAELKALVDLAPLLYDLKTILILPDHEAMAAREGHRLAPRYCT YIDSNFDELRSVIRHIFGLSHHDVAEDTASEAPVAQGRREAHKPRIEGSARENVA" gene 554477..556390 /locus_tag="Deba_0485" /db_xref="GeneID:9492931" CDS 554477..556390 /locus_tag="Deba_0485" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090:IPR018212; KEGG: dba:Dbac_1917 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: C0GS91 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003806452.1" /db_xref="GI:302341923" /db_xref="GeneID:9492931" /translation="MKKLSLRKKLLGGFVAVAVLTLVVGFVGWQGARSMGADMDKVVN DCLPAVQSLMEAQLALTEIGAAQEGLMRTGLTMERREALYAQAAAGRKSYDAAMARFD GLPMDQTQAAALAEFKGQTVKAQAEIDQFFALSHKLEANAILNPGQLRESLEGFRGDH YKLLGQSCTLIAQGVAFQGGDDATKCNFGRWMADFKTDNPVLKSALATMHDHHHAFHA AVGKLQGLMAQDAREEASAVYRTEMIPAAEATFKQFEVMRLEAAKAQELYAQMAEKAR SAATMLESPLKMLALMLAEKRQAAQAAQAQAESQGAWVRVLTMGGMVVGFVGAVLLGF FITGAIAKPLAGVIAGLSAGADQVAAASNQVAGSSQSLAEGSAQQAAALEETSSSLEE MSSMTKQNAQNAEEANSLTGEAAQVLHRASQAMGELTSSMEAISQTSREMAKIIKTID EIAFQTNLLALNAAVEAARAGESGAGFAVVAGEVRNLAGRAAEAAKNTAALIESSVSG IAQGVDMARRTSQVFEEVAANAGKVGHLVGEIAAASHEQAQGIALVSKASGEMDQVTQ QNAASAEESAAAAQEMSAQAQTMQAYVGQLTTLVTGGGAHEAAPLLEANDERRLLGWS RRRGHGAHPNDEF" misc_feature 554513..>554911 /locus_tag="Deba_0485" /note="Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_2; pfam12729" /db_xref="CDD:193205" misc_feature 555677..556168 /locus_tag="Deba_0485" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 556409..556702 /locus_tag="Deba_0486" /db_xref="GeneID:9492932" CDS 556409..556702 /locus_tag="Deba_0486" /note="KEGG: mgi:Mflv_4017 alanine dehydrogenase; SPTR: A4TCI0 L-alanine dehydrogenase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806453.1" /db_xref="GI:302341924" /db_xref="GeneID:9492932" /translation="MNSESKRRPVDIFGGDEVLRSCKWLLDDIQRKFEQLIQEGQNAG GEVSDDFRRRAAGLVAEFDLIWAEWRTRALGRGANPAALFEMEVSVDALRRLL" gene 557351..559276 /locus_tag="Deba_0487" /db_xref="GeneID:9492933" CDS 557351..559276 /locus_tag="Deba_0487" /note="COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR019575:IPR013027:IPR009051:IPR012285:IPR 016040:IPR000759:IPR001949; KEGG: dds:Ddes_1543 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SPTR: B8J118 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; manually curated; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulfide oxidoreductase" /protein_id="YP_003806454.1" /db_xref="GI:302341925" /db_xref="GeneID:9492933" /translation="MASQVFSTWGSWTPGREQVPTDQLPAEFAAGRPLRAFMGWDGLF IHDESVDLVDMARAYMDQAQKESCGQCFPCRLGVKAMSAILDGLCAGKGAPADLDRLE SLARFVSRASRCDIGQTTPRPILDLLTHRRQAFLAAIEAKAPIARGRYVAQVTAPCIN ACPSHLDIPGYVEKIRDGRWDQALSIIRDDCCLPGVVGRVCVRPCEFNCRRQKLDEGI AIRALKRHAADMELASGREAPLVPGPAKEQKVAIIGAGPAGLACAYHLGLRGYKSTIF EVLNEPGGMAAVGIPDYRLPRRILRGEANQVERLGCEIRYGVNVGVDVTLDDLKLQGY GAIFVGVGAPAASKMRCEGEDAGYECFMTGVDFLRRVADGERPIEGDKLLIIGGGNVA MDCARSALRLGFTDVNLLYRRTRAEMPADLVEISEAQEEGIKFHYLVAPLRVIAANGK VAGLECQRMELGEPDASGRRRPVAIEGSEFVIECDAIVPAIGQVCVVDCVLPPDEVEI SRRNTLATDDITRQTNQPYIFSGGDCVTGPAPLIAALDAGKNAARFIEQFLTNGRSVP EDGDHMERLIARLGVFYPREKMPYADATKKLRPPVMAPEVRIRGFDEVEGGVSPAQAA EEAARCLRCYRIAMAAL" misc_feature <557417..557779 /locus_tag="Deba_0487" /note="NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]; Region: NuoF; COG1894" /db_xref="CDD:32078" misc_feature 557507..557644 /locus_tag="Deba_0487" /note="NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; pfam10589" /db_xref="CDD:192637" misc_feature 557681..559249 /locus_tag="Deba_0487" /note="putative glutamate synthase (NADPH) small subunit; Provisional; Region: PRK12771" /db_xref="CDD:183735" misc_feature 558095..>558211 /locus_tag="Deba_0487" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 558494..558703 /locus_tag="Deba_0487" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 559392..561728 /locus_tag="Deba_0488" /db_xref="GeneID:9492934" CDS 559392..561728 /locus_tag="Deba_0488" /note="COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR001041:IPR019574:IPR001450:IPR006963:IPR 006656:IPR017896:IPR017900; KEGG: sfu:Sfum_3509 formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LP28 formate dehydrogenase, subunit alpha; PFAM: Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; 4Fe-4S binding domain; Molybdopterin oxidoreductase Fe4S4 domain" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_003806455.1" /db_xref="GI:302341926" /db_xref="GeneID:9492934" /translation="MPTLTLNGNNISFEPGWTILEAAKANGVEIPTLCHLQAADHKGV CRICVVEARGSDRLLPACATPAVEGMELRTDSPAVIEERKLIVELLLAEGDHNCLCCE ANGDCVLQRLAYAHGVKNAPVANPLATRLVDDSQAFIVRDFKKCVMCGRCVAACNEIQ VNMAIPLPFGRREDRPLPAGWLPLVDHDRCTQCGECVQACPVGALTEKKAKGRGRSWE LTKVRTTCPHCGVGCQQWLHVKDDQIVKVTAVEDARPNLGMLCVKGRFGHDFVGAAER LTTPLIKENGGFRQADWDEALDLVAGRLAAIKAAHGPEAFCGVADVGGVNEDAYNMQK FFRAVLGVNNIDHRGRACLAPQATGPAAACGSGAMTNSFAELEKAKLILVIGADVTED NPVAGAYIKRAARRGARLIVADPRRTGLVEHASLHAPVKAGAEVAFVNGLMRVLMEEG LYDKDQALKRAADFEKLRRTVERYNPEMVAAVAGVGPELLVELAHALATTKPAMLVHA LGPDEGARGLDKALAYADLQLLLGNVGRECGGVNLLRGRGNAQGLADMGALPGFYPGY QSVGDATARAKFERAWGVELNPKAGLALPAMFEAMARGAVKAMWICGEDVLAAAPDGQ HAARCLGALDFLVCGDILPTATTSLADVVFPLAAWGESDGVFTNSERRVSRARKAVNP PGQAKPGWWIFREVARRMGHDWPSQSSREIWDNELSVLAPALAGVTYDRLEGDGLQWP CPGLAHPGSAYLPADACPGPDAFHAVEWAPPADEPDGR" misc_feature 559398..559610 /locus_tag="Deba_0488" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature 559401..561479 /locus_tag="Deba_0488" /note="NADH-quinone oxidoreductase, chain G; Region: NuoG; TIGR01973" /db_xref="CDD:162633" misc_feature order(559479..559484,559491..559493,559518..559520, 559524..559535,559572..559577) /locus_tag="Deba_0488" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(559491..559493,559524..559526,559533..559535, 559575..559577) /locus_tag="Deba_0488" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature 559638..559751 /locus_tag="Deba_0488" /note="NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588" /db_xref="CDD:192636" misc_feature 559938..560009 /locus_tag="Deba_0488" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature 560058..561701 /locus_tag="Deba_0488" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature order(560178..560180,560436..560438,560442..560450, 560544..560549,560553..560555,560562..560567, 560628..560636,560694..560696,560913..560915, 561228..561236,561306..561314,561321..561323, 561357..561362,561375..561377) /locus_tag="Deba_0488" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:73198" gene complement(561750..562292) /locus_tag="Deba_0489" /db_xref="GeneID:9492935" CDS complement(561750..562292) /locus_tag="Deba_0489" /note="COGs: COG1525 Micrococcal nuclease (thermonuclease) homologs; InterPro IPR006021:IPR016071; KEGG: mpt:Mpe_B0143 nuclease; PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); SPTR: A2SMY2 Putative nuclease; PFAM: Staphylococcal nuclease homologue" /codon_start=1 /transl_table=11 /product="nuclease (SNase domain protein)" /protein_id="YP_003806456.1" /db_xref="GI:302341927" /db_xref="GeneID:9492935" /translation="MKRITVIVLLALAFCGQALAAGPGYTQATVLSVHDVDTLTARVE GFDVAQRVRVADIDGPELRVERRGKLIWPAQPWAALAASWAKATLAGQTVWLWIFEPD RNGRLVCRVHLPGDVDYALEALRLGHAHAYNRYRPAPAYEAMEAHARGARAGLWSLSR PISPEKWRRGAWRGQAVSGR" misc_feature complement(561822..562211) /locus_tag="Deba_0489" /note="Staphylococcal nuclease homologues; Region: SNc; smart00318" /db_xref="CDD:128613" misc_feature complement(561822..562199) /locus_tag="Deba_0489" /note="Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds; Region: SNc; cl00140" /db_xref="CDD:193675" misc_feature complement(order(561975..561977,561981..561986, 562110..562112,562119..562121,562137..562139, 562182..562184)) /locus_tag="Deba_0489" /note="Catalytic site; other site" /db_xref="CDD:29137" gene complement(562645..562721) /locus_tag="Deba_R0013" /db_xref="GeneID:9492936" tRNA complement(562645..562721) /locus_tag="Deba_R0013" /product="tRNA-Pro" /db_xref="GeneID:9492936" gene complement(562728..563327) /locus_tag="Deba_0490" /db_xref="GeneID:9492937" CDS complement(562728..563327) /locus_tag="Deba_0490" /note="COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR002637; KEGG: dma:DMR_43210 HAM1 protein homolog; PFAM: Ham1 family protein; SPTR: C4XQS8 Nucleoside-triphosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family" /codon_start=1 /transl_table=11 /product="non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family" /protein_id="YP_003806457.1" /db_xref="GI:302341928" /db_xref="GeneID:9492937" /translation="MSPRIVLASANQGKLREMMAICRPLGVEVVSAAELGFVDEVAET GESFAANARLKAAAVSQALHLPALADDSGLVVAALGGAPGVHSARYAGAHGDDAANCA KLMAAMAGLPPEKRGAAFVCVMVCRRPDGAEIVAEGRLEGRIALAPAGQNGFGYDPVF ELPARGCTVAQLAAEEKNAISHRGQALRGLAARLSDFLR" misc_feature complement(562752..563315) /locus_tag="Deba_0490" /note="NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-...; Region: HAM1; cd00515" /db_xref="CDD:29953" misc_feature complement(order(562779..562784,562857..562862, 562866..562868,562968..562970,563064..563069, 563106..563114,563277..563279,563286..563291, 563295..563297)) /locus_tag="Deba_0490" /note="active site" /db_xref="CDD:29953" misc_feature complement(order(563061..563063,563070..563072, 563079..563081,563088..563093,563193..563201)) /locus_tag="Deba_0490" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29953" gene complement(563324..564022) /locus_tag="Deba_0491" /db_xref="GeneID:9492938" CDS complement(563324..564022) /locus_tag="Deba_0491" /EC_number="2.7.7.56" /note="COGs: COG0689 RNase PH; InterProIPR001247:IPR015847:IPR020568:IPR002381:IPR 018336; KEGG: cko:CKO_05101 ribonuclease PH; PFAM: 3' exoribonuclease; exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: A8ARN1 ribonuclease PH; TIGRFAM: ribonuclease PH; manually curated; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH" /codon_start=1 /transl_table=11 /product="ribonuclease PH" /protein_id="YP_003806458.1" /db_xref="GI:302341929" /db_xref="GeneID:9492938" /translation="MSRIDGRNPGQMRPVVISGGVNPYAEGSAICAFGQTKVLCTASV EQGAPRFLEGAGQGWITAEYAMLPRATHTRTGRDHAQAGRAKEISRLVGRALRAAADL AALDGYTIRIDCDVLVADGGTRTAAVSGGWVALALALRGLGLQPPRQVMALSAGRVDG RLLVDLCYAEDSSAELDLNMVLAADGQLIEIQGTGERGVFSPEELMELIAISRQAAGD IVAAQLAAVNGPAR" misc_feature complement(563342..564019) /locus_tag="Deba_0491" /note="ribonuclease PH; Reviewed; Region: rph; PRK00173" /db_xref="CDD:178914" misc_feature complement(563639..563992) /locus_tag="Deba_0491" /note="3' exoribonuclease family, domain 1; Region: RNase_PH; pfam01138" /db_xref="CDD:189854" misc_feature complement(563378..563575) /locus_tag="Deba_0491" /note="3' exoribonuclease family, domain 2; Region: RNase_PH_C; pfam03725" /db_xref="CDD:190728" gene 564236..564318 /locus_tag="Deba_R0014" /db_xref="GeneID:9492939" tRNA 564236..564318 /locus_tag="Deba_R0014" /product="tRNA-Leu" /db_xref="GeneID:9492939" gene complement(564445..564582) /locus_tag="Deba_0492" /pseudo /db_xref="GeneID:9492940" gene 564714..565763 /locus_tag="Deba_0493" /db_xref="GeneID:9492941" CDS 564714..565763 /locus_tag="Deba_0493" /note="InterPro IPR001584:IPR012337:IPR009057; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain" /codon_start=1 /transl_table=11 /product="integrase catalytic region" /protein_id="YP_003806459.1" /db_xref="GI:302341930" /db_xref="GeneID:9492941" /translation="MTTEKKVARRKLSLLELAGELSNVSRACKLMGYSRQQFYEIRRN FQTYGAQGLVDRLPGPKGPHPNRVEAEVEAAIMAYSLEYPTHGALRVSQQLALRGVQV SSGGVRGVWSRHEMLTRHERLLRLEQSVRAQDIQLSDEQIRALERFSPEFRDRHIEAR HTGALVAVDTFFVGALKGVGKVYLQSVIDCHSRHAWGRLYTSKLPVTAVHVLNEEVLP CFEAHDAVIETVLSDNGREFCGRPDQHPYELFLQLEGIEHRTTRVRRPQSNGFVERLH RTLLDEHFRIKGRQKWYETLDEMQADLDEYLRHYNHERAHQGRNMNGRTPSQAFLEGL PGRKKPKEKASQKAA" misc_feature 565185..565559 /locus_tag="Deba_0493" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 565885..566622 /locus_tag="Deba_0494" /db_xref="GeneID:9492942" CDS 565885..566622 /locus_tag="Deba_0494" /note="KEGG: cpb:Cphamn1_2546 hypothetical protein; SPTR: B3EQE2 Putative uncharacterized protein; PFAM: Putative phosphatase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806460.1" /db_xref="GI:302341931" /db_xref="GeneID:9492942" /translation="MSGTKHPKIALCYDFDGTLSPRNMQEYSFIPQLAIDKTVFWRQV AEQAKNGDEDNILSYMHLMLKKAKETGHVRVARSSFKELGTSIDLFPGVEDWFQRINE HARSKGAKIEHYIISSGLKEIIEGTKIAKQFKMIYASSYSYDQHDVAIWPALAINYTT KTQYLFRINKGVFDVWDHKKVNEYKPESERYIPFNRFIYIGDGSTDVPCMKLTKTKGG HSIAVYKPKANSKAAKTLLGCTDIVFT" misc_feature 565912..566523 /locus_tag="Deba_0494" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene complement(566649..567698) /locus_tag="Deba_0495" /db_xref="GeneID:9492943" CDS complement(566649..567698) /locus_tag="Deba_0495" /note="InterPro IPR001584:IPR012337:IPR009057; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain" /codon_start=1 /transl_table=11 /product="integrase catalytic region" /protein_id="YP_003806461.1" /db_xref="GI:302341932" /db_xref="GeneID:9492943" /translation="MTTEKKVARRKLSLLELAGELSNVSRACKLMGYSRQQFYEIRRN FQTYGAQGLVDRLPGPKGPHPNRVEAEVEAAIMAYSLEYPTHGALRVSQQLALRGVQV SSGGVRGVWSRHEMLTRHERLLRLEQSVRAQDIQLSDEQIRALERFSPEFRDRHIEAR HTGALVAVDTFFVGALKGVGKVYLQSVIDCHSRHAWGRLYTSKLPVTAVHVLNEEVLP CFEAHDAVIETVLSDNGREFCGRPDQHPYELFLQLEGIEHRTTRVRRPQSNGFVERLH RTLLDEHFRIKGRQKWYETLDEMQADLDEYLRHYNHERAHQGRNMNGRTPSQAFLEGL PGRKKPKEKASQKAA" misc_feature complement(566853..567227) /locus_tag="Deba_0495" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(567889..569532) /locus_tag="Deba_0496" /db_xref="GeneID:9492944" CDS complement(567889..569532) /locus_tag="Deba_0496" /note="COGs: COG0459 Chaperonin GroEL (HSP60 family); InterPro IPR002423:IPR001844:IPR018370; KEGG: dal:Dalk_4242 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: B8FM86 60 kDa chaperonin; TIGRFAM: chaperonin GroEL; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL" /codon_start=1 /transl_table=11 /product="chaperonin GroEL" /protein_id="YP_003806462.1" /db_xref="GI:302341933" /db_xref="GeneID:9492944" /translation="MAKELKYDVKAREAIMRGVDTLANAVKVTLGPKGRNVIIDKSFG SPIITKDGVTVAKEIELENKFENMGAQMVKEVASKTSDVAGDGTTTATILAQAIYREG SKLVAAGHNPMAIKRGIDKAVEAVVAALRKLSKTTKDQKEIAQVGTISANNDATIGNI IAEAMNKVGKEGVITVEEAKSMETTLEVVEGMQFDRGYLSPYFVNDPEKMVANIDDPL ILIHEKKISSMKDLLPILEQVAKMNRPLLIVSEDVEGEALATLVVNKLRGTLNACAVK APGFGDRRKAMLEDIAILTGGTVISEDLGIKLENASLKDLGTAKRVTVDKDNTTIVDG GGERSKLEGRVKTIRAQIEETTSDYDREKLQERLAKLIGGVAVINVGAATETEMKEKK ARVEDALNATRAAVEEGIVPGGGVALLRCQEAIAAAGLEGAESFGANIIRRAIEEPLR QIAENAGLEGSVVVQKVKETSGTVGYNAQDDKYEDLLEAGVIDPTKVTRFALQNAASV AGLLLTTECMIAEKPEEKGAGAPAMPGGMGGMGGMGGMY" misc_feature complement(567955..569532) /locus_tag="Deba_0496" /note="chaperonin GroEL; Reviewed; Region: groEL; PRK12849" /db_xref="CDD:183791" misc_feature complement(567970..569526) /locus_tag="Deba_0496" /note="GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344" /db_xref="CDD:48161" misc_feature complement(order(567973..567993,568000..568002, 568162..568164,568378..568380,568384..568386, 568765..568767,568849..568851,568945..568947, 569308..569310,569317..569319,569329..569331, 569353..569355,569359..569361,569389..569391, 569395..569400,569413..569415,569419..569430, 569461..569463,569512..569514,569524..569526)) /locus_tag="Deba_0496" /note="ring oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:48161" misc_feature complement(order(568054..568056,568060..568062, 568177..568179,568291..568293,568342..568344, 569086..569088,569263..569265,569275..569277, 569437..569445)) /locus_tag="Deba_0496" /note="ATP/Mg binding site [chemical binding]; other site" /db_xref="CDD:48161" misc_feature complement(order(568138..568140,568147..568152, 568156..568158,568183..568185,568237..568239, 569209..569211)) /locus_tag="Deba_0496" /note="stacking interactions; other site" /db_xref="CDD:48161" misc_feature complement(order(568306..568311,568411..568413, 568957..568959,568978..568980,569113..569115)) /locus_tag="Deba_0496" /note="hinge regions; other site" /db_xref="CDD:48161" gene complement(569589..569876) /locus_tag="Deba_0497" /db_xref="GeneID:9492945" CDS complement(569589..569876) /locus_tag="Deba_0497" /note="COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR020818:IPR011032:IPR001476:IPR018369; KEGG: sfu:Sfum_0120 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: C1SNI1 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit" /codon_start=1 /transl_table=11 /product="Chaperonin Cpn10" /protein_id="YP_003806463.1" /db_xref="GI:302341934" /db_xref="GeneID:9492945" /translation="MNIKPLQDRVIVKRLEEVEKTAGGLIIPDAAKEKPQQGRILAVG PGKVLDNGTKLELTVKAGDVVLFGKYAGTEVKIDGDEVLIMREDDILGIVA" misc_feature complement(569595..569873) /locus_tag="Deba_0497" /note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts...; Region: cpn10; cd00320" /db_xref="CDD:73192" misc_feature complement(order(569598..569606,569652..569654, 569658..569660,569673..569675,569703..569705, 569766..569771,569850..569852,569859..569861, 569865..569867,569871..569873)) /locus_tag="Deba_0497" /note="oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:73192" misc_feature complement(569784..569825) /locus_tag="Deba_0497" /note="mobile loop; other site" /db_xref="CDD:73192" misc_feature complement(order(569709..569711,569742..569744)) /locus_tag="Deba_0497" /note="roof hairpin; other site" /db_xref="CDD:73192" gene 570153..571232 /locus_tag="Deba_0498" /db_xref="GeneID:9492946" CDS 570153..571232 /locus_tag="Deba_0498" /note="COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR007197:IPR004383; KEGG: ank:AnaeK_2229 radical SAM enzyme, Cfr family; PFAM: radical SAM domain protein; SPTR: B4UDP0 radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family" /codon_start=1 /transl_table=11 /product="radical SAM enzyme, Cfr family" /protein_id="YP_003806464.1" /db_xref="GI:302341935" /db_xref="GeneID:9492946" /translation="MAQKPDLRDLTAEQLARLLADLGEKPFRARQVSQWLHGHGVDDI ADMTSLSKALRAKLSAVGRLTAMGPAKVLQSADGTRKLLFLLEDGQAIESVLMPEDGH HTLCVSTQVGCRQGCRFCATASLGLRRNLRPAEILGQVLAARRLCDEFRPLTNLVFMG MGEPLDNLDNVIVALGHILGEHGLQMSQRRVTVSTVGLVDRLPLLAAASPCALAISLN APNEHIRRQIMPVTKRFGLEALRRAIVDYPLKPTRRVTLEYVLLGGVNDRPEHARELA RWAKGLPVKVNLIAFNPHQAGPFQAPEAAAVEEFQNVLIEGHVTALLRRSRGQDIAAA CGQLVAGQSADGAPGQPLTGPQASA" misc_feature 570153..571166 /locus_tag="Deba_0498" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" misc_feature 570162..571172 /locus_tag="Deba_0498" /note="Predicted Fe-S-cluster redox enzyme [General function prediction only]; Region: COG0820" /db_xref="CDD:31162" gene complement(571175..572617) /locus_tag="Deba_0499" /db_xref="GeneID:9492947" CDS complement(571175..572617) /locus_tag="Deba_0499" /note="InterPro IPR000415:IPR020051; KEGG: dol:Dole_2124 hypothetical protein; PFAM: nitroreductase; SPTR: A8ZTZ5 Putative uncharacterized protein; TIGRFAM: SagB-type dehydrogenase domain; PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain" /codon_start=1 /transl_table=11 /product="SagB-type dehydrogenase domain protein" /protein_id="YP_003806465.1" /db_xref="GI:302341936" /db_xref="GeneID:9492947" /translation="MSSYHDETAYDPAGMEGHVLDWANQPSPFKFYKKIAPLPMPEPR PTTAGFWEAALAWPPPAAGPALADSADLAGLLQLAAGLTKRSGPQGLRAWASAGALHP CELYLAACDVDGAPQGLCHFDPASGGLHLLWPGRLATHIGRALAGPPARLGFFISAIH WRSLWKYRQRAYRYCLLDAGHLLANLELACAAHGLAPRTILGFPDTAAGVMAGVADRD EAIMAIVQAGPPPADPGPEQPGLPPLDLAAKPLGAVIGRDRRVLAAHAHGELFVAQPE PDWPEPEPGEHDQPLPPPTPPGEPSLWAVVHARRSRRNFVHAGLERRALATLLAAALP ARGPMTARLLLAPGRDLAMGVYDYLPDRRALRPVVPGVDSRAALAQACLGQGWIGRAA LTLCLWADLEKLERDFGPRAYRRAMIAAGRAGQRLYLAATALGLGCCGVGAFYDERAA RAAALPPGGRLLYALACGPVKGWPGAPSAD" misc_feature complement(571943..572362) /locus_tag="Deba_0499" /note="This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring. These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the...; Region: mcbC-like_oxidoreductase; cd02142" /db_xref="CDD:48388" misc_feature complement(572336..572338) /locus_tag="Deba_0499" /note="NADPH bind site [chemical binding]; other site" /db_xref="CDD:48388" misc_feature complement(order(571949..571951,572012..572017)) /locus_tag="Deba_0499" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:48388" misc_feature complement(571277..>571591) /locus_tag="Deba_0499" /note="This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring. These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the...; Region: mcbC-like_oxidoreductase; cd02142" /db_xref="CDD:48388" gene complement(572617..572946) /locus_tag="Deba_0500" /db_xref="GeneID:9492948" CDS complement(572617..572946) /locus_tag="Deba_0500" /note="KEGG: lbf:LBF_4045 transglycosylase; SPTR: B0STQ0 Putative soluble lytic murein transglycosylase; SLT domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806466.1" /db_xref="GI:302341937" /db_xref="GeneID:9492948" /translation="MQPDERLAAVEQAIERLEGKLAAMRQRVEARIKPSPAEVKALHG LAQGLTAETGQMLGLREGVDPPENAAPELLAAYDRALGLCVALTEFSLSLSRRFGPAY LTLPGSA" gene 573071..575467 /locus_tag="Deba_0501" /db_xref="GeneID:9492949" CDS 573071..575467 /locus_tag="Deba_0501" /note="COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300:IPR011330; KEGG: tro:trd_1935 glycosyl hydrolase, family 57; PFAM: glycoside hydrolase family 57; SPTR: B9L234 glycosyl hydrolase, family 57; PFAM: glycosyl hydrolase family 57; Domain of unknown function (DUF3536)" /codon_start=1 /transl_table=11 /product="glycoside hydrolase family 57" /protein_id="YP_003806467.1" /db_xref="GI:302341938" /db_xref="GeneID:9492949" /translation="MAKHVCVHGHFYQPFRENPWLEVVEVQDSAAPFHDWNERVAAEC YAPNSAARIMGAEGKITDIVNNYQFMSFNFGATLMGWLRAQAPAVHEALIEADQAAIA RWGHGGAMAQVYHHLIMPLCNDRDKQTQILWGLADFAHRFGRPAAGMWLAETAVDTPT LELMAQAGVKFTVLAPRQAAMIRPGPDAAWHEIGADGLNTRRPYIVRLRGGRSIVVFF YDGPVSQAVAFENLLQDGARFAQRIMGAFVEGEGGDQLVSLATDGESYGHHHRFGEMA LAFALQRIDHDPTVKLTNFAAYLAANPPTWEARIVEASSWSCAHGVERWRADCGCNTG GNPGWNQKWRGPLRQGLNVLRDQLADLFEQKADGLLHDPWAARDDYVRLLLDNSAAGR KRFLENHAKILLDQQGRATVWQLLEMQRWAMAMFTSCGWFFDDISGLEPVQNLRMAAR AIQLARELGAAGLERSLVATLSRAQSNRPNKGSGADIWRARVAPELVGLERVAAHAAI SGVMEEEPPPPRLYCYQLADLGHRHIDHLGASLSWGALRARHVRIGRDHELIYAALHR GGHEFAAWVRPRPTDWDIDEIGAAAEDLLRSLELERVEAVLARLVGGQRFDLSDLFLE GRRSLAEEMARRLTTRNFEVAKSIYDESKEQMLMLKSINVPLPPLFNALAEAMIGEEL VQGMDLPPGRDLAGHLGALARQAKALSLKPNGGRLERALAKRLAACLAELLESPAAVG PLERALTLLDLAQALELRPDLWEAQNHYFELIGSLAGPPSDGLAKLARRLNIAIAARP " misc_feature 573089..574027 /locus_tag="Deba_0501" /note="Glycosyl hydrolase family 57; Region: Glyco_hydro_57; pfam03065" /db_xref="CDD:145948" misc_feature 574085..574936 /locus_tag="Deba_0501" /note="Domain of unknown function (DUF3536); Region: DUF3536; pfam12055" /db_xref="CDD:152490" gene 575495..577597 /locus_tag="Deba_0502" /db_xref="GeneID:9492950" CDS 575495..577597 /locus_tag="Deba_0502" /EC_number="2.4.1.25" /note="COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterProIPR004300:IPR015178:IPR015179:IPR011330:IPR 011013:IPR000602; KEGG: rba:RB2160 alpha-amylase; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926; PRIAM: 4-alpha-glucanotransferase; SPTR: Q7UWA6 Alpha-amylase; PFAM: Domain of unknown function (DUF1925); glycosyl hydrolase family 57; Domain of unknown function (DUF1926)" /codon_start=1 /transl_table=11 /product="4-alpha-glucanotransferase" /protein_id="YP_003806468.1" /db_xref="GI:302341939" /db_xref="GeneID:9492950" /translation="MDKISLIMVLHGHQPVGNYDKVFALATRVCYRPVVELLGQYPDF HFGLHFSGPLLGWLEQNDPELLDLLAAMVDRGQVEMLSGGYYEPLLSSIPARDALGQL AMMTDYLQRRFGQRPQGFWLAERVWEPGLPAKLAPAGLGYTLVDDTHLYYAGLPPRAM FGHSLTEREGHLLALLPTNKELRYTIPFQEPQATLDFMRRALDEHGPTCATYGDDCEK FGLWPRTQELVFGRGWLRRFVEAVLANGDWLATSRPGQWVAENKPAGRVYLPTASYEE MGEWSLPAEAGQALAQAVEELRAEGRYEAFRRFIRGGVWDNFLVKYRPSNIMHKRMLR ISQKVAQSGDPIARDHLYQAQCNCAYWHGMFGGLYLGHLRQAVHQQLIAAEAICDAAQ APGGACDVADLDLDGAPEVALANRHLDLLIHPAYGGSASVLNLRGPACNLADVLTRQP EAYHRHLWEPHDDQGQGQGGDEVKSIHDVVRFKQPDLPQRVVYDWYQRACFQDHLLAP KADWQSYQRPDYGEWGDLIDQPFELVEHGQDGGRTFCLLRRVSAVFAPGGPFPLSVEK RYSLGPGPELRLSYWLRAAADAPAMRLAVELNLTMLAHDDPQRFIELADGRIWSPGQT AQATGVEWLRLVNKPQDYAVTISPGPAAEAWLFPVETVSQSEDGLELTYQGSSLSFLW PVPAGAGLCKFELTLKIA" misc_feature 575513..576364 /locus_tag="Deba_0502" /note="Glycosyl hydrolase family 57; Region: Glyco_hydro_57; pfam03065" /db_xref="CDD:145948" misc_feature 575594..>575860 /locus_tag="Deba_0502" /note="Glycosyl hydrolases family 38 N-terminal domain; Region: Glyco_hydro_38; pfam01074" /db_xref="CDD:144606" misc_feature 576431..576640 /locus_tag="Deba_0502" /note="Domain of unknown function (DUF1925); Region: DUF1925; pfam09094" /db_xref="CDD:149963" misc_feature 576698..577588 /locus_tag="Deba_0502" /note="Domain of unknown function (DUF1926); Region: DUF1926; pfam09095" /db_xref="CDD:149964" gene complement(577605..579917) /locus_tag="Deba_0503" /db_xref="GeneID:9492951" CDS complement(577605..579917) /locus_tag="Deba_0503" /note="COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR000644:IPR000160; KEGG: drt:Dret_0176 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: C8WZK3 Diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; CBS domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase/phosphodiesterase" /protein_id="YP_003806469.1" /db_xref="GI:302341940" /db_xref="GeneID:9492951" /translation="MLYDLIPAARRESGRGLGLGDEAKVFELVMEAAAARRPLGLLLV NIPGFDRFSGIYGTDAAGQIVERLDTILRASAKAQFKENGLIHLGQLGVSQYLLIYAG NGLSQRRMTDRALRLLLDARHRLGQESVRLTGQGLSLEVGCAYLPPEWSESPESDFRR ALVKARAVASDLLNQEGLSLLNEFRKLIDEPLVQAVYQPIVDLESGRPLGWEALARGP EGSYFQSPTMMFDFAEEVGSLFRLERACREQAIRGLGGLRPEQKLFVNIHPRTLADPD FRAGQTRKLLRANGLEPANVVFEITERHSIQNFTLFYRTLDHYRSQGFLVAIDDVGTG YSGLSRIANLRPDYIKADMSLVRGIDSNPVQRALLEALVTLADKIGSSVVAEGIETET ELTCLAEMGVHYGQGFFLARPANPKPLTDTVIAIRGKRGGEANWKCSIPVRELAEPGP QVHPGAKVRGVKALLDNNPISGVVVVEAGRPVGLVMSHALDRQLGTQYGPALYFDRSV DLLMDRRPLVVDGSQPVEDVAKMAMSRDRFKLYDHIIVTESGRCLGLVSVQKMLDALA RVQVEMAKGASPLTGLPGGLTLEREIENHCNGDDPASFIYIDLDHFKAYNDTYGFKSG DAMLRLLAKIAAWAAKRHAGKGHFVGHVGGDDFVVICQPQRAERVCTAVVRCFSRLVK GLYSAEHAAQGYVEAKGRDGRMSRFPLVSVSLGIVDCVGACDLQQIGQRAAETKRWAK SLPGNVWVRDRRRPVSAASPEGQPGVCPPR" misc_feature complement(578670..579374) /locus_tag="Deba_0503" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" misc_feature complement(578226..578579) /locus_tag="Deba_0503" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain...; Region: CBS_pair_GGDEF_assoc; cd04598" /db_xref="CDD:73098" misc_feature complement(578232..578570) /locus_tag="Deba_0503" /note="FOG: CBS domain [General function prediction only]; Region: COG0517" /db_xref="CDD:30863" misc_feature complement(<578040..578153) /locus_tag="Deba_0503" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(578094..578096) /locus_tag="Deba_0503" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(578043..578045,578055..578057, 578067..578072,578079..578081)) /locus_tag="Deba_0503" /note="active site" /db_xref="CDD:143635" gene complement(580093..580305) /locus_tag="Deba_0504" /db_xref="GeneID:9492952" CDS complement(580093..580305) /locus_tag="Deba_0504" /note="KEGG: svi:Svir_36200 hypothetical protein; SPTR: C8RV23 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806470.1" /db_xref="GI:302341941" /db_xref="GeneID:9492952" /translation="MSQKTIKWEYRTVWVDKLWTVLSDIGCAGHAAPQSEGFVEYLNR IGQDGWELVTILPGDKGHRAFLKRPV" gene 580503..582149 /locus_tag="Deba_0505" /db_xref="GeneID:9492953" CDS 580503..582149 /locus_tag="Deba_0505" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006091:IPR006090:IPR009075:IPR009100:IPR 013764; KEGG: dal:Dalk_3085 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FBM2 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003806471.1" /db_xref="GI:302341942" /db_xref="GeneID:9492953" /translation="MSLPDRANPYNFDEIIGQIQGFNYYADDPFLQKALERHAGAEFP ALDQALRRFDPLVSQRWRKMADEIARPDVLPVLQNYDAHNRRIDRLVRPETTKILERE IFGQGLFAAATPPWLGMVKRYLLHQNGEFGVMCPIACTEGLVALADQFPEGRHPAVQR ILDHCKEGFDGDFGVGAQFMSEIQGGSDIPANLLEAVPAGDHYLLHGSKFFCSAMQAD YAVVTAKVSGGEKPGAFIVPAWLPGDKEREKRNACRINRIKWKMGTAELPTAEVEYDG AVAYAVGPTDRGVANAVGVVLTLSRLTVGFSSAAAMVRAAREAGLYSQFRDVFGQKIC QTPLAAHQLRGMINTSRRTTAAAFKVFGLFVSLGRRLQGGLDSNEPLAMRRKRFLLRE LIIIQKLVTAFEAPEVIRQAMSIFGGHGVIEDFVSLPRLYRDAAVNELWEGPRNVLLM QALRDLLRVQGWYPAADFVADMLAGAQPARVAELAAELAGFMADPPAVEATAQSMARA AQWERLVEELFHAYQDQALAEIGPAPIVSRELISFPAIWD" misc_feature 580575..581879 /locus_tag="Deba_0505" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature 580743..581885 /locus_tag="Deba_0505" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature order(580926..580928,581034..581036,581040..581042, 581133..581135,581139..581141,581820..581828, 581832..581834,581838..581840) /locus_tag="Deba_0505" /note="active site" /db_xref="CDD:173838" gene 582201..583712 /locus_tag="Deba_0506" /db_xref="GeneID:9492954" CDS 582201..583712 /locus_tag="Deba_0506" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_3084 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FBM1 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806472.1" /db_xref="GI:302341943" /db_xref="GeneID:9492954" /translation="MELNIGALISERARLSPDREGFIGEGYRYSFAQVNSRVNQLAAY LAGRGIGFGDRVAVLCKNNEHIGVALFAAAKLGAIAVMLNWRLQGPELEYILGDCGAT TLLYDVDFLPVVDGLRAKIPVKNYIRRGGQGPDADYEQALASQPDAEPTLRGGGDDGA VIMYTSGTTGRPKGAVLTHHNLLWQTMAISHTVRWYYDHRFLVVAPLFHIGGLAPVVT NVHEGSTSYFMPEFDPVKVWKVIAEEKITTMMSVPLMVQALYMVAQKMPVDSSSLLNI TCGAAAVPKSLIQAFLAMGVRVQQVYGATEVSGSATFWTHEMDPERCDSQGKADFHTQ IRIADPASGQTLPTGQVGEIWVKGPIVFKEYWGKPQATAEAKQDGWYRTGDMGRMDDK GYVFVVDRLKDMIISGGENIYPAELEAVIASHPAVAEVAVVGRHDEKWGEIPVAYLAL KPEAKLEAKEIFDLCRKNLAAFKCVKEVRFVEALPRNPVGKILKTTLRQMVDA" misc_feature 582201..583709 /locus_tag="Deba_0506" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature 582201..583700 /locus_tag="Deba_0506" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(583788..586316) /locus_tag="Deba_0507" /db_xref="GeneID:9492955" CDS complement(583788..586316) /locus_tag="Deba_0507" /note="InterProIPR000160:IPR001440:IPR013105:IPR006597:IPR 011717:IPR019734:IPR011990:IPR013026; KEGG: drt:Dret_2188 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: hypothetical protein; GGDEF domain containing protein; hypothetical protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_4; SMART: GGDEF domain containing protein; Tetratricopeptide repeat; SPTR: C8X4X5 Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: GGDEF domain; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase and serine/threonine protein kinase with TPR repeats" /protein_id="YP_003806473.1" /db_xref="GI:302341944" /db_xref="GeneID:9492955" /translation="MPIAANSGHAQQLSYEALVRYEETIKPPFRRALKSGRVDLLPPP IDEPGRNDPLARAANHGRALYDEAGARLLIPLRDEGRCLAVLAVHEVSAKQLTGEVGP FLASLVEAAMEAARLRQSRDLDPTSGLFIEPVLDEAMAGAISRLRPSLSRGRPALGAQ HPGGVCLALLEVDALAALQERHGRRLADRALAVTAGRLREAAADSICLARLGNALAVL WSDDEGQPRQAAEEIMARLEGIRLETPQGPAWPLGLRLGAATINAADCRGLAVDLAAQ QKARAQRALQTTRRAGAGALIFFEDIAERWGRLSQVLPLDKAIIDLGRADGLAQGQRF QALDQAGLARAELIVLDVAEDESVAQIVAVNQPTEPPRPGDALRLAPAADSEKAAAGQ AGPREEIVIGAQRLEAAVDQATGLLTRLSLAQALGLLCEQAQPMAAVLARIEGLEGVR QISGHLGAEALMRALAEEARLAFPPNAVLGRHAPDTLAALLPEQSVEQARDWAQRMTE AMRRRTERPVRAGAAAHPCPGWPASDILENALKALVHAGFLEPFAAVAFDAVSLNISG DMLFDQGLIAQAAAEYEKALLLDPNEPNVLNSLGVCHGQQGRPQQAMEYFQKAMDAQP DNFMAHFNMGCALMALDHLEQARRGLERALELSPGHADSLFQLGRLAQMQGRVLEAAE LLQRAAKAPDCRRAVHRHLGEALAALGRADQAEACLKTAVKLLPRDAAALAGLAGLYL DRGANREIALSLASRAARLEPDQPRHQALLARAQQDLGRLEEAAATLRAAVEAWPEDP YLPLSLGRVLAAQGQADAARRQILRALELEPNLQEARAQLVALG" misc_feature complement(584343..584621) /locus_tag="Deba_0507" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(584358..584360,584367..584369, 584379..584381,584415..584417,584460..584462, 584469..584471,584481..584483,584517..584519, 584562..584564,584571..584573,584583..584585, 584619..584621)) /locus_tag="Deba_0507" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(order(584397..584402,584409..584414, 584421..584426,584502..584507,584514..584519, 584523..584528,584613..584618)) /locus_tag="Deba_0507" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(584148..584432) /locus_tag="Deba_0507" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(584193..584198,584205..584210, 584217..584222,584298..584303,584310..584315, 584319..584324,584409..584414,584421..584426, 584430..584432)) /locus_tag="Deba_0507" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(584154..584156,584163..584165, 584175..584177,584211..584213,584256..584258, 584265..584267,584277..584279,584313..584315, 584358..584360,584367..584369,584379..584381, 584415..584417)) /locus_tag="Deba_0507" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(586336..587736) /locus_tag="Deba_0508" /db_xref="GeneID:9492956" CDS complement(586336..587736) /locus_tag="Deba_0508" /EC_number="2.9.1.1" /note="COGs: COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; InterPro IPR018319:IPR015424:IPR004534:IPR018062; KEGG: gsu:GSU3369 selenocysteine synthase; PFAM: pyridoxal phosphate-dependent transferase; PRIAM: L-seryl-tRNA(Sec) selenium transferase; SPTR: P61736 L-seryl-tRNA(Sec) selenium transferase; TIGRFAM: L-seryl-tRNA selenium transferase; PFAM: Selenocysteine synthase N terminal; L-seryl-tRNA selenium transferase; TIGRFAM: seryl-tRNA(sec) selenium transferase" /codon_start=1 /transl_table=11 /product="L-seryl-tRNA selenium transferase" /protein_id="YP_003806474.1" /db_xref="GI:302341945" /db_xref="GeneID:9492956" /translation="MADQNALSRLPKIDQVLAQAALAEALDQLPRALVLRAARQSVDQ LRRDIIHGAAPPEAELSAQAVAARAADLARQMARPSLRGLINATGVVVHTNLGRSVLA EQAIARIVATNGSYSNLEYNLEGGRRGSRYEHVAGVLREITGAEAALVVNNNAAAVFL ALQSLAAGREVIVSRGQLVEIGGSFRIPDVMARSGAILREVGATNKTHIHDYERAISD QTALLLKVHTSNFAVVGFHQEVALPELVALGRKRGLPVMDDLGSGCFVDLAAFGLPRE PTVQDALAMGADLVAFSGDKLLGGPQAGILLGRADLIGLLRQNPINRALRIDKLTLAA LEATLELYRDPQKAIEQIPTLRMLSTPYDELATRAAALLRKLRALKLPRLAVRGLRGT SLVGGGALPLAAPDSRLLEVAIEGRSATALEAALRAWRKPIICRLDDGRLLMDMRTIL PADWAEIIAACKALAA" misc_feature complement(586378..587718) /locus_tag="Deba_0508" /note="seryl-tRNA(sec) selenium transferase; Region: selA; TIGR00474" /db_xref="CDD:161897" misc_feature complement(<586798..>587160) /locus_tag="Deba_0508" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature complement(order(586849..586851,586858..586860, 586924..586926,586936..586938,587056..587058)) /locus_tag="Deba_0508" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature complement(586849..586851) /locus_tag="Deba_0508" /note="catalytic residue [active]" /db_xref="CDD:99742" gene complement(587754..588317) /locus_tag="Deba_0509" /db_xref="GeneID:9492957" CDS complement(587754..588317) /locus_tag="Deba_0509" /note="InterPro IPR000086:IPR015797:IPR020084; KEGG: rmr:Rmar_0039 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: D0MK35 NUDIX hydrolase; PFAM: NUDIX domain" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_003806475.1" /db_xref="GI:302341946" /db_xref="GeneID:9492957" /translation="MSDSDRWERKERRTIFRHHVLEASMSHCRRGDGLERDFVVLASP DWVNVVPLTADGQVVLIRQFRVGSNDWAIEIPGGMIDPGERPIDAAAREMREETGYDA DELVYLGKVNPNPALFENTCYTFLAKNAAPKADQRLDEGEMIEVFTAPLAELPAMVAD GRIDHSLVVSALAFFWLHRGLTDKAGR" misc_feature complement(587781..588188) /locus_tag="Deba_0509" /note="ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as...; Region: ADPRase_NUDT5; cd03424" /db_xref="CDD:72882" misc_feature complement(order(587781..587786,587796..587798, 587805..587807,587817..587819,587841..587846, 587883..587885,587889..587894,587955..587969, 587973..587975,587979..587990,588105..588107, 588120..588122,588126..588128,588132..588134, 588183..588185)) /locus_tag="Deba_0509" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:72882" misc_feature complement(order(587958..587960,588027..588029, 588039..588041,588081..588083,588123..588125, 588180..588182)) /locus_tag="Deba_0509" /note="ADP-ribose binding site [chemical binding]; other site" /db_xref="CDD:72882" misc_feature complement(order(587892..587894,587958..587960, 588027..588029,588039..588041,588081..588089, 588123..588125)) /locus_tag="Deba_0509" /note="active site" /db_xref="CDD:72882" misc_feature complement(order(588018..588071,588075..588086)) /locus_tag="Deba_0509" /note="nudix motif; other site" /db_xref="CDD:72882" misc_feature complement(order(587892..587894,588027..588029, 588039..588041)) /locus_tag="Deba_0509" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:72882" gene 588433..588894 /locus_tag="Deba_0510" /db_xref="GeneID:9492958" CDS 588433..588894 /locus_tag="Deba_0510" /note="COGs: COG1406 inhibitor of MCP methylation homolog of CheC; InterPro IPR007597; KEGG: dat:HRM2_37370 CheX2; PFAM: CheC domain protein; SPTR: C0QAL2 CheX2" /codon_start=1 /transl_table=11 /product="CheC domain protein" /protein_id="YP_003806476.1" /db_xref="GI:302341947" /db_xref="GeneID:9492958" /translation="MNVELINPFLSATVNVIKTMAFTEVKPGKPFLKKDHHATGDVSA VIGITGESEGSLSVSFTEECIINIVSNMFGEKITAINREVEDAVGEITNMISGDARRE LSEKGVMLKAAIPSVITGKQHTIKHMTNSPVIAIPFSTASGDFTVEVCFTN" misc_feature 588433..588891 /locus_tag="Deba_0510" /note="Predicted inhibitor of MCP methylation, homolog of CheC [Cell motility and secretion]; Region: COG1406" /db_xref="CDD:31596" gene complement(588908..589192) /locus_tag="Deba_0511" /db_xref="GeneID:9492959" CDS complement(588908..589192) /locus_tag="Deba_0511" /note="InterPro IPR003425; KEGG: pmx:PERMA_1227 YGGT family protein; PFAM: protein of unknown function YGGT; SPTR: A6DA20 YGGT family protein; PFAM: YGGT family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806477.1" /db_xref="GI:302341948" /db_xref="GeneID:9492959" /translation="MEVFLINLLQFVNYVLHVYMWIVIIAALVSWVSPDPYNPIVRFL SRATEPVYARIRRLLPTNFGGLDIAPMIVIFAILLVQRVLLGSLLELLAR" misc_feature complement(588962..589159) /locus_tag="Deba_0511" /note="YGGT family; Region: YGGT; cl00508" /db_xref="CDD:193846" gene 589303..590091 /locus_tag="Deba_0512" /db_xref="GeneID:9492960" CDS 589303..590091 /locus_tag="Deba_0512" /note="InterPro IPR009875; KEGG: sat:SYN_02698 cytoplasmic protein; PFAM: type IV pilus assembly PilZ; SPTR: Q2LWK0 Hypothetical cytosolic protein; PFAM: PilZ domain" /codon_start=1 /transl_table=11 /product="type IV pilus assembly PilZ" /protein_id="YP_003806478.1" /db_xref="GI:302341949" /db_xref="GeneID:9492960" /translation="MIFTRKKAPAKPPAAKPKPRPEPTQEELLAEALRPGRQVCLAVA ADLVSDRIDVRPSMVHDIVKGGLLILAQTNPPLAKRAEGQTVEITFLIPHPDRGAEYL RLGYKTKILRVIDGWKVDERLTDNIIVAPKPHRLERTTLRLHYRVEPTSEAPLRLLLA PDGPELVLLDISVGGARFNHHRNLALEHDQVIELLMEAENLSLGLRARVVRTSRDGAT SPRAPTTTAVQFVETTPEAKTCLGRLVNEIARRQRARDAGLLDE" misc_feature 589726..590043 /locus_tag="Deba_0512" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene 590252..590671 /locus_tag="Deba_0513" /db_xref="GeneID:9492961" CDS 590252..590671 /locus_tag="Deba_0513" /note="InterPro IPR019734:IPR013026; KEGG: hypothetical protein; SPTR: A0FJY8 Type I fatty acid synthase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806479.1" /db_xref="GI:302341950" /db_xref="GeneID:9492961" /translation="MKNKRMALAMALALVLGLTLAATAQQGSTPAGDPQAAAESLRFG QESFQRGLYGQAKAYFKQALQADPSSETAWSFYDLCVIYDVAEQVKKAGRVVSTDAAS PAPAAAAAAPPAPAPAPAMPAPPKAGGGMVIGHDEGC" misc_feature 590381..>590527 /locus_tag="Deba_0513" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cl02429" /db_xref="CDD:194311" misc_feature order(590381..590383,590417..590419,590429..590431, 590438..590440,590489..590491,590525..590527) /locus_tag="Deba_0513" /note="TPR motif; other site" /db_xref="CDD:29151" gene 590748..591368 /locus_tag="Deba_0514" /db_xref="GeneID:9492962" CDS 590748..591368 /locus_tag="Deba_0514" /note="COGs: COG0607 rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dat:HRM2_03660 hypothetical protein; PFAM: rhodanese domain protein; SMART: rhodanese domain protein; SPTR: C0QGL1 Putative uncharacterized protein; PFAM: rhodanese-like domain" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="YP_003806480.1" /db_xref="GI:302341951" /db_xref="GeneID:9492962" /translation="MKKFVSIMMAVMFMASVATVAMAADNPLVDKEKAFWKEFTSVIP KDKIVNVDALYAEWQKVLAGQSDAILLDVRTHPEFDAFHIEGTSHIHAGHMYTIPKAV PDPNAKIFVFCRTAHRAAYVAAFLYKYGYTNVYYVGPIKDGDKKVNEGGVVGWAQKGY PFVNAFAGQIVIQQYMQPTWTERNCGKYIREFSGQRGENCSKKTLQ" misc_feature <590835..>591005 /locus_tag="Deba_0514" /note="putative rhodanese-related sulfurtransferase; Provisional; Region: PRK00142" /db_xref="CDD:178897" misc_feature 590931..591215 /locus_tag="Deba_0514" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158" /db_xref="CDD:29073" misc_feature 591084..591086 /locus_tag="Deba_0514" /note="active site residue [active]" /db_xref="CDD:29073" gene 591461..592807 /locus_tag="Deba_0515" /db_xref="GeneID:9492963" CDS 591461..592807 /locus_tag="Deba_0515" /EC_number="1.1.1.81" /note="COGs: COG2379 Putative glycerate kinase; InterPro IPR007835; KEGG: sus:Acid_0778 glycerate 2-kinase; PFAM: MOFRL domain protein; PRIAM: hydroxypyruvate reductase; SPTR: Q02AY9 glycerate 2-kinase; PFAM: MOFRL family" /codon_start=1 /transl_table=11 /product="hydroxypyruvate reductase" /protein_id="YP_003806481.1" /db_xref="GI:302341952" /db_xref="GeneID:9492963" /translation="MSQARRSRQDACKIIQAALEAADPARAVSRALRLAGDELWVGPR RFDLRAFRRIVCVGAGKAGQPMAQALEAVLGPRLAEGVVVVKDGHGGPTALTRILEAS HPVPDQRGVTAAQAVAELLARNAAADTLVFCLLSGGGSALLPAPAPGLSLADKQEITR LLLASGADIGQINAIRKHLSALKGGNLARLAGAATVVSLIISDVVGDRLDVIASGPTV ADESTWAHCRQALLARGVWEQAPAAVRQRIEDGLAGRIADTPKADDPALRRAFNLIVA SNRQAIEAAAHTAASLGYTALILSTTIEGETKDIARMHAAIAREALEHGRPVAAPFCL LSGGETTVSLGRATGLGGRNQEFALAAAPDLAGLEGVLAFSLGTDGTDGPTDAAGAWA DGQTMARAEALGLDQAKFLANHDAYHFFQELDDLIITGPTRTNVMDVRAVLGLARS" misc_feature 591476..592789 /locus_tag="Deba_0515" /note="MOFRL family; Region: MOFRL; cl01013" /db_xref="CDD:154146" gene 592814..593815 /locus_tag="Deba_0516" /db_xref="GeneID:9492964" CDS 592814..593815 /locus_tag="Deba_0516" /note="COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR003439:IPR013563:IPR003593:IPR010066:IPR 017871; KEGG: gau:GAU_0758 peptide ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; SPTR: C1A6E0 Putative peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_003806482.1" /db_xref="GI:302341953" /db_xref="GeneID:9492964" /translation="MSEPLLAIKGLSIAFPIQGRWPRAVDELDLEVRPGQIVGLVGES GCGKSMTALGVMGLVPPPGRIEAGQVIFEGRAMVGAPEERLRAFRGAQAAMVFQEPMT SLNPVFTVGRQIAEGVRAHRPVSKAQAWELAVSALAQVGIADPARRAKSYPHQLSGGM RQRVMIAMALAMSPRLLLADEPTTALDVTIQAQILRLMDQLRQQTGAAVLLITHDLAV VAQTADQVAVMYMGRLVEQAPVAEFFANPLHPYANGLLACRPSLSAPRGQRLPTIGGA APALDRLPAGCVFSNRCPRRFGPCQEAEPELWQVAPDHWVRCYLHHDRARARRREAA" misc_feature 592826..593773 /locus_tag="Deba_0516" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444" /db_xref="CDD:30793" misc_feature 592826..593527 /locus_tag="Deba_0516" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 592937..592960 /locus_tag="Deba_0516" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(592946..592951,592955..592963,593105..593107, 593351..593356,593453..593455) /locus_tag="Deba_0516" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 593096..593107 /locus_tag="Deba_0516" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 593279..593308 /locus_tag="Deba_0516" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 593339..593356 /locus_tag="Deba_0516" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 593363..593374 /locus_tag="Deba_0516" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 593441..593461 /locus_tag="Deba_0516" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature 593510..593773 /locus_tag="Deba_0516" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene 593812..594780 /locus_tag="Deba_0517" /db_xref="GeneID:9492965" CDS 593812..594780 /locus_tag="Deba_0517" /note="COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterProIPR003439:IPR013563:IPR002696:IPR003593:IPR 010066:IPR017871; KEGG: sro:Sros_5910 peptide ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; SPTR: B5GVG5 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter, ATPase subunit" /protein_id="YP_003806483.1" /db_xref="GI:302341954" /db_xref="GeneID:9492965" /translation="MSAETLLSLRGLSRSFRVATGFLGAGKRSLLAVDDVCLDVAQGE VLGLVGESGCGKSTLGRLAVGLLRPSAGAALFEGHDLASLKGEGLRRMRRRLQIIFQD PVTSLNPRLTVGSALAEPFIIHGVCTRRQAAAKVSSLLEEVGLGPEHASRYPHQFSGG QRQRIGIARALALRPSLVLADEPVSALDVSIQAQVLNLLMDLRQKLGLTYVFVAHDLA VVRHMADRVAVMYLGGVVDVFAAQDFADPAMHPYTAALLASAPQADPARRPAAPPVLG ETPSPLDPPTGCRFHPRCPEAAAICRQKRPALRPVTPRRLCACHFR" misc_feature 593878..594771 /locus_tag="Deba_0517" /note="dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308" /db_xref="CDD:183084" misc_feature 593887..594522 /locus_tag="Deba_0517" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 593959..593982 /locus_tag="Deba_0517" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(593968..593973,593977..593985,594112..594114, 594352..594357,594454..594456) /locus_tag="Deba_0517" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 594103..594114 /locus_tag="Deba_0517" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 594280..594309 /locus_tag="Deba_0517" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 594340..594357 /locus_tag="Deba_0517" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 594364..594375 /locus_tag="Deba_0517" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 594442..594462 /locus_tag="Deba_0517" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature 594559..594774 /locus_tag="Deba_0517" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene complement(594777..595706) /locus_tag="Deba_0518" /db_xref="GeneID:9492966" CDS complement(594777..595706) /locus_tag="Deba_0518" /note="COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127:IPR006128; KEGG: dal:Dalk_1551 periplasmic solute binding protein; PFAM: periplasmic solute binding protein; SPTR: B8FAF3 Periplasmic solute binding protein; PFAM: Periplasmic solute binding protein family" /codon_start=1 /transl_table=11 /product="periplasmic solute binding protein" /protein_id="YP_003806484.1" /db_xref="GI:302341955" /db_xref="GeneID:9492966" /translation="MPKTKIALLALVAILAALRAAPAPAADKLVVAVGVAPLAYLAEQ VGGDRLQVETLVGPGQSPHTFEPTARQMVRLSQAKLLFIIDLPFERVLAPKVAANNPG LRVIDLRQGLPTRHFGPAEAHHHDHDHDATHHHHDHDAEPDLHVWMSPRLASQMAAAM AQAFSAADPAGRDVYQANLAALQKRLADLDQAIARALAPLRGRQVFVFHPAFGYLLDD HGLRQVAIEFEGKSPGPKRLAQLIDLAKRQRVRVIFVQPQFSDASAKALAEAIDGAVL PLDPLAHDYEANLRAMAAQIAQALQPQGAGQGR" misc_feature complement(594837..595604) /locus_tag="Deba_0518" /note="Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface...; Region: TroA-like; cl00262" /db_xref="CDD:193735" misc_feature complement(594843..595598) /locus_tag="Deba_0518" /note="Periplasmic solute binding protein family; Region: SBP_bac_9; pfam01297" /db_xref="CDD:189932" misc_feature complement(order(595221..595223,595413..595415, 595422..595427)) /locus_tag="Deba_0518" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:29734" gene complement(595856..596104) /locus_tag="Deba_0519" /db_xref="GeneID:9492967" CDS complement(595856..596104) /locus_tag="Deba_0519" /note="KEGG: lsa:LSA0016 chromosome partitioning ATPase; SPTR: A2AXF8 Putative mevalonate kinase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806485.1" /db_xref="GI:302341956" /db_xref="GeneID:9492967" /translation="MLKPNSDAWLQSHCQQLIDCPNQPGKLRISAASCAKRYDLANQS RYQSISGDSQDIVAFKFNLAHCRGCEIGAAMAGKDAAA" gene complement(596311..597573) /locus_tag="Deba_0520" /db_xref="GeneID:9492968" CDS complement(596311..597573) /locus_tag="Deba_0520" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FHJ1 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003806486.1" /db_xref="GI:302341957" /db_xref="GeneID:9492968" /translation="MVTEYLMAFGFLVVITVVVMVGAHFVLGRTLAYKMMVRLSPGLV LTYANSYLWGQIGIDNWLFSFGILCFGGLVMFLCFWWAHRSIVVPMMSASQKMRVGGG QLTAAAGVVARAADDLADGSSSQAASLEQSAASLEQMASMIRQNADHAAQADTLMNET KQTVGRASQAMVNLNTSMQDISAASVETSKIIKTIDEIAFQTNLLALNAAVEAARAGE AGAGFAVVADEVRNLAMRAAEAAKSTATLIEGTVHKIDDGVKLVSSAGKVFEEVAGNS GKVAELISEIASASREQAQGIDQVNTAVAQMDKATQQNAANAQEAAAAAGQMHGLCAD IADLAEEIIERLGGRADEAPTARTAPQPAARPMPAPPKAAPAPQPKAVQPEHRRLGSQ APRQIENKRPPKPEDVIPFDDEVDFKEF" misc_feature complement(596647..597117) /locus_tag="Deba_0520" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(597742..598251) /locus_tag="Deba_0521" /db_xref="GeneID:9492969" CDS complement(597742..598251) /locus_tag="Deba_0521" /note="KEGG: gvi:gll4127 cyanophycinase; SPTR: Q7NDV5 Cyanophycinase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806487.1" /db_xref="GI:302341958" /db_xref="GeneID:9492969" /translation="MIIDARKAQAWALALVAAAVLIGLGYWLGGEAAQERLNLALADA DHYNRQAARQAAINTQLQNRLTELERLLAQSLAVTEAGPAQEVKSRLLRRGQAVILLG GALVATLEDVTLEPAMARIGLQNAGGEKGRAELAVGAETLIRASGRVYRLVLKKVTVN SATIALLAR" gene complement(598280..599455) /locus_tag="Deba_0522" /db_xref="GeneID:9492970" CDS complement(598280..599455) /locus_tag="Deba_0522" /note="COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR013022; KEGG: sfu:Sfum_0023 xylose isomerase domain-containing protein; PFAM: xylose isomerase domain protein TIM barrel; SPTR: A0LE74 xylose isomerase domain protein TIM barrel; PFAM: xylose isomerase-like TIM barrel" /codon_start=1 /transl_table=11 /product="xylose isomerase domain protein TIM barrel" /protein_id="YP_003806488.1" /db_xref="GI:302341959" /db_xref="GeneID:9492970" /translation="MPANNDHLAIIWLCLSRPGPGPELTAARALRQALEGHARTLILG PEGSDGVDLRLGRRLDLGPALEACPDELRPAAVICLGAAIPAGLELAPCPCLAWGPAT GCDQTLPAPADQAAEAAMAALGRGPRLSWLAHVQVNMPLGDLLGRYEALARSAPVNLE IGLDASALDSCGPAEMARAKAIIAGRRITAHLPFMDLYPAAADPLMAAAAARRLEMAV TTALELGAIQAVGHLGFWPMMHRDVAAFAARHATAMTPIAQALAAGGCRLVLENTMEP DPAPLLACRRALSESSGVEVGFCLDVGHANSFSRTSLPAWWRAMESHLWEMHLHDNDG SDDSHYPPGSGRIDWAFIAEGLRGLSTKPILTLEPHTEAHFWASLRGLERLWGRPEA" misc_feature complement(598415..>598795) /locus_tag="Deba_0522" /note="Xylose isomerase-like TIM barrel; Region: AP_endonuc_2; pfam01261" /db_xref="CDD:189913" gene 599578..600081 /locus_tag="Deba_0523" /db_xref="GeneID:9492971" CDS 599578..600081 /locus_tag="Deba_0523" /note="KEGG: pcu:pc1812 hypothetical protein; SPTR: Q6MA63 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806489.1" /db_xref="GI:302341960" /db_xref="GeneID:9492971" /translation="MPRIEIEVSDKTMAQWREFAATMQADELRQSGLLGEWLVQGFLT NVHLYLAEGGPQPPESRKSRNDRQDAEARRKLPKDKKRVLPMFNENDRLTVAEIARVL GLSEENGRALVDGWIAEGFLTNAGPRDGQTAYTLAEDWQVRNLAANRPSLNAPRSVYK PVALNRE" gene 600086..600262 /locus_tag="Deba_0524" /db_xref="GeneID:9492972" CDS 600086..600262 /locus_tag="Deba_0524" /note="KEGG: dvl:Dvul_1412 hypothetical protein; SPTR: Q72BG1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806490.1" /db_xref="GI:302341961" /db_xref="GeneID:9492972" /translation="MVYSQVAYCPCGQEVWLEYIRAQGEGGWRCRFFDEQNQEISACP ACGRPLNEDELDSR" gene complement(600406..600822) /locus_tag="Deba_0525" /db_xref="GeneID:9492973" CDS complement(600406..600822) /locus_tag="Deba_0525" /note="KEGG: dsa:Desal_2286 calcium-binding EF-hand-containing protein; SPTR: C6BWR2 Calcium-binding EF-hand-containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806491.1" /db_xref="GI:302341962" /db_xref="GeneID:9492973" /translation="MKKYLGLALMIGLFVLAGAAQAEDDIPNLVGVWQAQMDVTQIHS ARGNFVKRLEKVEVFIDSQQGRAFSGRKLHHAGGKIVSENISGVIDWDDKTIYVVDHD KGLTRAAIESPTDIRGVYLEDGPEAKVVLITWKKMK" gene complement(600994..601416) /locus_tag="Deba_0526" /db_xref="GeneID:9492974" CDS complement(600994..601416) /locus_tag="Deba_0526" /note="COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: kol:Kole_1745 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: B9R0S1 peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase FKBP-type" /protein_id="YP_003806492.1" /db_xref="GI:302341963" /db_xref="GeneID:9492974" /translation="MSTVMAGDKVQINYTGKYESGEIFDSSQGREPLAFTAGGPELIP GVSNAVIGMSVGQSKTVTIAPEDGYGPHNPELTQRVELARMPPNVQVGMQLQAQIQDQ MVSFWVTEVDADFATVDANHPLAGKVLVFDIELLAIGA" misc_feature complement(<601204..601413) /locus_tag="Deba_0526" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587" /db_xref="CDD:187101" misc_feature complement(<601003..601398) /locus_tag="Deba_0526" /note="FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]; Region: SlpA; COG1047" /db_xref="CDD:31248" gene 601624..602607 /locus_tag="Deba_0527" /db_xref="GeneID:9492975" CDS 601624..602607 /locus_tag="Deba_0527" /note="COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: dsa:Desal_2341 secretion protein HlyD family protein; PFAM: secretion protein HlyD family protein; SPTR: C6BX91 Secretion protein HlyD family protein" /codon_start=1 /transl_table=11 /product="secretion protein HlyD family protein" /protein_id="YP_003806493.1" /db_xref="GI:302341964" /db_xref="GeneID:9492975" /translation="MIYRLSALCLLLGALLLAAGCADEPDGVLPGYVEGRFTYVSAPA GGKLLALEARRGAKVEKGQPLFRLEAEPEASAVQEARWRVDQAAETLANLQKGARPSE IAAVEARLRKARAALQLSRLQYERRRALYSQKAIAKSEYDSHRAAYLADSAAVKDVEA QLATARLGARDDEIRAAEAELRARQEALGKALWLLDQKFQSAPVEALVFDTLYTVGEY APAGSPVVALLAPGEVRARFFAPEALVGALRLGQRVELACDGCPAGLWATISYISPQA EYTPPVIYSANMRHKLSFMIEATPPPERAQGLHPGQPLDVTLPVGQSHAAK" misc_feature 601741..>602601 /locus_tag="Deba_0527" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 602594..603514 /locus_tag="Deba_0528" /db_xref="GeneID:9492976" CDS 602594..603514 /locus_tag="Deba_0528" /note="COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: dma:DMR_22930 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C4XSU2 Putative ABC transporter ATP-binding protein; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806494.1" /db_xref="GI:302341965" /db_xref="GeneID:9492976" /translation="MPQSELVIDVRGVTKRFGGKTVVDGLDMQVRRGEIYGFLGPNGS GKTTFLRMLCGLLRPDAGQGVCLGHDIIGQSQLIKPQVGYMAQRFSLYEDLTVDENLN FIAALYGLAERRQAVGQVRARMGLEPFRRHLAGALSGGWKQRLALACCLVHRPKLLLL DEPTAGVDPKARRDFWDQVHLLTAEGVTALITTHYMDEAERCHRLAYIAYGQLLAKGA AEEVVAAEGLNTWSASGGDPHALRRALEGAPGVDQVAPFGNTIHVSGRDPVALSRAIE PLLGDYQWRQVETSLEEVFISLMQRAGKKP" misc_feature 602612..603496 /locus_tag="Deba_0528" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:31326" misc_feature 602615..603229 /locus_tag="Deba_0528" /note="This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding...; Region: ABC_DR_subfamily_A; cd03230" /db_xref="CDD:72989" misc_feature 602711..602734 /locus_tag="Deba_0528" /note="Walker A/P-loop; other site" /db_xref="CDD:72989" misc_feature order(602720..602725,602729..602737,602852..602854, 603074..603079,603173..603175) /locus_tag="Deba_0528" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72989" misc_feature 602843..602854 /locus_tag="Deba_0528" /note="Q-loop/lid; other site" /db_xref="CDD:72989" misc_feature 603002..603031 /locus_tag="Deba_0528" /note="ABC transporter signature motif; other site" /db_xref="CDD:72989" misc_feature 603062..603079 /locus_tag="Deba_0528" /note="Walker B; other site" /db_xref="CDD:72989" misc_feature 603086..603097 /locus_tag="Deba_0528" /note="D-loop; other site" /db_xref="CDD:72989" misc_feature 603161..603181 /locus_tag="Deba_0528" /note="H-loop/switch region; other site" /db_xref="CDD:72989" gene 603511..604644 /locus_tag="Deba_0529" /db_xref="GeneID:9492977" CDS 603511..604644 /locus_tag="Deba_0529" /note="COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525:IPR000412; KEGG: dma:DMR_22920 ABC transporter permease protein; PFAM: ABC transporter; SPTR: B4D6L5 ABC transporter; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806495.1" /db_xref="GI:302341966" /db_xref="GeneID:9492977" /translation="MSRFSPRRLGAIIAKEFVQMRRDRLTFAMMVMIPIMQLVLFGYA INSDPKHLPTAVIVADHGPFGRTLLAALQQSDYFDFVAQYDSQEQGRQALALGQVQFV VNIPVDFSRKLMRGQRPRLLLEADATDPSAVGNALGVLGTLAASALDRDLKGPLARLR QNAGPVEVAVHRLYNPEAETQYNIVPGLMGVVLSMTLVIITGLAMTRERERGTMENLL TTPVRPLEVILGKIIPYILVGYVQMILIMVAAKLLFDVPFLGSISFLLCASLIFIAAN LAVGITFSTVAQNQLQAVEMAFFFFLPSVLLSGFMFPFRGMPQWAQYVGEILPLTHYL RLVRGLLLKGNSPMQAMEHIWPLALFVTVMVFVSVKRYRQTLD" misc_feature 603580..>603852 /locus_tag="Deba_0529" /note="YhgE/Pip N-terminal domain; Region: pip_yhgE_Nterm; TIGR03061" /db_xref="CDD:132105" misc_feature 604030..604536 /locus_tag="Deba_0529" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene complement(604651..605475) /locus_tag="Deba_0530" /db_xref="GeneID:9492978" CDS complement(604651..605475) /locus_tag="Deba_0530" /note="COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: similar to peroxisomal enoyl-coenzyme A hydratase-like protein; PFAM: enoyl-CoA hydratase/isomerase; SPTR: C9Y8M4 delta(3,5)-delta(2,4)-dienoyl-CoA isomerase, mitochondrial; PFAM: enoyl-CoA hydratase/isomerase family" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_003806496.1" /db_xref="GI:302341967" /db_xref="GeneID:9492978" /translation="MEQKPMVTYHRQGHIGYLTLNRPDKRNAMSVTFWHSLGRAVELA AADDEARVLILRGEGKSFCAGLDLSPENELFAAVMSPEGKSAAMKTKLYHEIRRVQNI HTAFERLPMPTIAAVHSHCLGAGLELAVCADFRYASADALFALPEAKLSFITDVGGLQ RLQRLLGTAQAREIAFRGHRFDAQKALQIGLINQILPDKAALDQAVLAVAQEIAANPP LAVRGAKDVFLYDLDVSMEESLAYNCARSVMILPNDDMNEAIGAYLEGRTGDFKGA" misc_feature complement(604657..605457) /locus_tag="Deba_0530" /note="enoyl-CoA hydratase; Provisional; Region: PRK06142" /db_xref="CDD:180422" misc_feature complement(604885..605457) /locus_tag="Deba_0530" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(605026..605028,605035..605040, 605104..605112,605116..605118,605272..605286, 605296..605298,605392..605394,605398..605400)) /locus_tag="Deba_0530" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(605104..605106,605278..605280)) /locus_tag="Deba_0530" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(604897..604899,604906..604908, 604939..604941,604948..604953,604957..604962, 604966..604971,604984..604989,604993..605001, 605005..605007,605023..605034,605068..605079, 605140..605142,605164..605166)) /locus_tag="Deba_0530" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(605596..606156) /locus_tag="Deba_0531" /db_xref="GeneID:9492979" CDS complement(605596..606156) /locus_tag="Deba_0531" /note="InterPro IPR013216; KEGG: afw:Anae109_4101 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A7HHT3 methyltransferase type 11; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003806497.1" /db_xref="GI:302341968" /db_xref="GeneID:9492979" /translation="MPQFDVCPWWMGYLIDNHVRRLIHDPALIVGPHLRPGATCLDVG CGMGFFSLAMARMVGENGVVHAVDLQSRMLSALMRRARRRGLDERIQPRQCAKDDPGL ADLHDAVDFALACWMIHEVPERHGLIGQIARAMRPGAAFLILEPKGHLPAGDFEKTLA IAEEAGLRQVGEPPARLSRTALLAKK" misc_feature complement(<605722..606156) /locus_tag="Deba_0531" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(606183..606779) /locus_tag="Deba_0532" /db_xref="GeneID:9492980" CDS complement(606183..606779) /locus_tag="Deba_0532" /note="COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: ank:AnaeK_0029 NAD(P)H dehydrogenase (quinone); PFAM: NAD(P)H dehydrogenase (quinone); SPTR: B4UKI1 NAD(P)H dehydrogenase (Quinone); PFAM: Flavodoxin-like fold" /codon_start=1 /transl_table=11 /product="NAD(P)H dehydrogenase (quinone)" /protein_id="YP_003806498.1" /db_xref="GI:302341969" /db_xref="GeneID:9492980" /translation="MRILIILAHPRPGSFNHALAQAAADAARTLGHDVTLRDLHAEGF DPILPADEAKKGAALPPLVAEHCRLLAQADGLIVVHPNWWGMPPAILKGWVDRVVRPG VAYEFLEGDDGQGVPRGLLRARAALILNTGDTEPTRERLVFGDPLEGLWARCILGLCG VNDVRRRLFGVVVTSTAQERQQWLDQARAMVAQAFPAH" misc_feature complement(606207..606779) /locus_tag="Deba_0532" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene complement(606785..608101) /locus_tag="Deba_0533" /db_xref="GeneID:9492981" CDS complement(606785..608101) /locus_tag="Deba_0533" /note="InterPro IPR002790; KEGG: rfr:Rfer_1542 hypothetical protein; PFAM: protein of unknown function DUF88; SPTR: Q21Y79 Putative uncharacterized protein; PFAM: Protein of unknown function DUF88" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806499.1" /db_xref="GI:302341970" /db_xref="GeneID:9492981" /translation="MKNIAVYWDFENIHSSLCNLRYGEDWLDQFRGQRHPAVVDIGAI MQFAESQGSVNINKAYGNWAWYQQYSHDLHEFTFDLVQLFPRGMNMKNGADIRLAIDA LDDLNRHEHLSVFIIVGGDSDYISLAQRVRQRGKEIIGIGVRETTNKFWINACNDFRF YSSIAALGAEGGSSAPPPQATGDIEEAKRLLRQAVFELQKHHGGEAVRMAHVRPMLTN LDPYFDLADYGCRSFDEFISRCADCVITSQAGQETHVKLIDQAPPAQVKPADISANVD LYRKILDEKDMPLPRPGLLKPGLLHVIELFVNQPEGLDYLNDVDKSLSEHFLQMNLSH ATTDCFNIRQLIYRIRGFYIDKEANKRFLHYKNEDFRSLWEQIAHRLLDAIHEAIDGE LDFAALSLLIQGDDSLADELAGLAQAAGQYRPKTPPAPFQAATVVE" misc_feature complement(607619..608098) /locus_tag="Deba_0533" /note="LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback...; Region: LabA_like; cd06167" /db_xref="CDD:100118" misc_feature complement(order(607733..607735,607739..607741, 607745..607747,607814..607816,608066..608068, 608075..608077)) /locus_tag="Deba_0533" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:100118" misc_feature complement(<607391..607543) /locus_tag="Deba_0533" /note="LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7; Region: LOTUS; cl14879" /db_xref="CDD:196840" gene complement(608133..609584) /locus_tag="Deba_0534" /db_xref="GeneID:9492982" CDS complement(608133..609584) /locus_tag="Deba_0534" /EC_number="6.1.1.16" /note="COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR015803:IPR015273:IPR009080:IPR014729:IPR 002308; KEGG: sfu:Sfum_1634 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: A0LIR9 Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="cysteinyl-tRNA synthetase" /protein_id="YP_003806500.1" /db_xref="GI:302341971" /db_xref="GeneID:9492982" /translation="MPLVVYNTQSRRKEEFIPLEPGVVRVYVCGVTVYDDPHIGHARC YVAFDAMVRHFLAKGWRVNYVRNFTDIDDKIIRRAAESGLGWRELADKYIESFRQDMA ALDVLPPSHEPRATEHIAEMIATIQTLMAKGHAYQIEGGDVLFAVESFDGYGKLSRRN LEDMQAGARVEVDPRKKNPMDFVLWKASKPGEPSWDSPLGPGRPGWHIECTAMSGKYL GQTFDIHGGGEDLVFPHHENEIAQGEACTGHPLAHYWLHNGFVRVNHEKMSKSLGNFF TIKDILKITRPEALRLFLLSKHYRSPLDFSDAAIKEAGAGLERLYTALQAAQERAAAG PLDAAGQALAAEIQALADEFEAGMDDDFNTARAIGALFGLARLGNKLAAEPDGPAKGP LLELCARRLRELGGRLGLLRIDPAEFFRGAAGQTATQGGVGAADIEALIAQRNQARKD KNFAEADRIRDQLKAMGVTLQDSPQGTTWRMEG" misc_feature complement(608139..609584) /locus_tag="Deba_0534" /note="cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260" /db_xref="CDD:178951" misc_feature complement(<609207..609572) /locus_tag="Deba_0534" /note="catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672" /db_xref="CDD:173899" misc_feature complement(order(609237..609239,609378..609380, 609384..609386,609450..609455,609462..609467, 609471..609473,609489..609500)) /locus_tag="Deba_0534" /note="active site" /db_xref="CDD:173899" misc_feature complement(609462..609473) /locus_tag="Deba_0534" /note="HIGH motif; other site" /db_xref="CDD:173899" misc_feature complement(608667..>608969) /locus_tag="Deba_0534" /note="catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672" /db_xref="CDD:173899" misc_feature complement(608772..608786) /locus_tag="Deba_0534" /note="KMSKS motif; other site" /db_xref="CDD:173899" misc_feature complement(608145..608666) /locus_tag="Deba_0534" /note="Anticodon-binding domain of cysteinyl tRNA synthetases; Region: Anticodon_Ia_Cys; cd07963" /db_xref="CDD:153417" misc_feature complement(order(608145..608147,608169..608180, 608205..608207,608214..608216,608226..608228, 608241..608243,608253..608255,608448..608450, 608457..608459,608466..608471,608478..608480, 608487..608492,608496..608498,608610..608612, 608619..608621,608628..608630,608637..608639, 608649..608651,608658..608660)) /locus_tag="Deba_0534" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153417" misc_feature complement(order(608169..608177,608205..608207, 608214..608216,608226..608228,608241..608243, 608253..608255)) /locus_tag="Deba_0534" /note="anticodon binding site; other site" /db_xref="CDD:153417" gene complement(609584..610789) /locus_tag="Deba_0535" /db_xref="GeneID:9492983" CDS complement(609584..610789) /locus_tag="Deba_0535" /note="COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR001228:IPR003526:IPR020555; KEGG: dau:Daud_0186 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: Q1NQ03 4-diphosphocytidyl-2C-methyl-D-erythritol synthase:MECDP-synthase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: YgbB family; Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" /codon_start=1 /transl_table=11 /product="2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" /protein_id="YP_003806501.1" /db_xref="GI:302341972" /db_xref="GeneID:9492983" /translation="MAEKVVAIVVAAGGGTRMGGPAPKQFLALGGRPILSWALAAAQA AACVDAIVVVCPAGWEDHTRRHCLAPFGLDKVRAVVAGGAQRQDSVAAGLEAALGLGA HWLLIHDGARPLARPELFAAVLEGARAHGAAIAGVPVVDTIKRSADGRLVQTTEDRRP LWRAQTPQGFRAELLAQALQAARAAGWSFTDEAGLFERLGREVRLIMGRADNIKITTP EDLALAQALLGPPAIRVGQGLDYHRLAPGRPLVLGGVRLEHELGLLGHSDADVLTHAV MDGLLAAAGLGDIGRLFPDHDPAHKDADSLVLLGRVVALLAEHGWRPAQIAVTLVAQG PKIAPHAPAMAQNLARVAGLSPGQVNVAATTTEAMGAIGRGEGMSALAVVTITPLEGA AEPAPSRRR" misc_feature complement(609632..610744) /locus_tag="Deba_0535" /note="bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional; Region: ispDF; PRK09382" /db_xref="CDD:181813" misc_feature complement(610130..610744) /locus_tag="Deba_0535" /note="CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516" /db_xref="CDD:133009" misc_feature complement(order(610148..610150,610457..610465, 610523..610525,610532..610543,610718..610720, 610739..610744)) /locus_tag="Deba_0535" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133009" misc_feature complement(order(610160..610165,610175..610186, 610199..610201,610208..610213,610217..610222, 610298..610315,610367..610369,610373..610375, 610397..610399,610454..610456)) /locus_tag="Deba_0535" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133009" misc_feature complement(609632..610090) /locus_tag="Deba_0535" /note="MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid...; Region: MECDP_synthase; cd00554" /db_xref="CDD:100025" misc_feature complement(order(609635..609637,609641..609643, 609647..609649,609686..609694,609701..609706, 609710..609712,609776..609778,609782..609784, 609803..609805,609809..609811,609815..609817, 609926..609931,609935..609940,609944..609946, 610049..610051,610061..610069,610073..610075, 610079..610081,610085..610090)) /locus_tag="Deba_0535" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100025" misc_feature complement(order(609968..609970,610064..610066, 610070..610072)) /locus_tag="Deba_0535" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:100025" misc_feature complement(order(609695..609703,609776..609787, 609791..609796,609920..609922,609926..609928)) /locus_tag="Deba_0535" /note="CDP-binding sites; other site" /db_xref="CDD:100025" gene complement(610854..611411) /locus_tag="Deba_0536" /db_xref="GeneID:9492984" CDS complement(610854..611411) /locus_tag="Deba_0536" /note="InterPro IPR005500; KEGG: dat:HRM2_21250 hypothetical protein; PFAM: protein of unknown function DUF309; SPTR: C0QDF9 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF309)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806502.1" /db_xref="GI:302341973" /db_xref="GeneID:9492984" /translation="MASKEFDPYATRLARDIRNTLAHDFVHGLLAGDRGAAERAGRRL LAADPPPGHAAWIDQRLELYRRAEGQLTGAAHLPPLELGLALWRRGLFFEAHEALEQA WQTASGPRRQALKALVQAVGSCVHAQRGATAVAASLARKAAQGLLDHGQAVEELPWLA ELAARLNQGQACTLDDGWPPPKVEA" misc_feature complement(610995..611180) /locus_tag="Deba_0536" /note="Domain of unknown function (DUF309); Region: DUF309; cl00667" /db_xref="CDD:153922" gene 611641..612648 /locus_tag="Deba_0537" /db_xref="GeneID:9492985" CDS 611641..612648 /locus_tag="Deba_0537" /EC_number="1.2.1.12" /note="COGs: COG0057 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020828:IPR020829:IPR020831:IPR016040:IPR 020832:IPR006424:IPR020830; KEGG: sfu:Sfum_1468 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: A0LIA5 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase, type I" /protein_id="YP_003806503.1" /db_xref="GI:302341974" /db_xref="GeneID:9492985" /translation="MIRIGINGFGRIGRQVFKAVKERYPGQVLVAAVNDLCDVETSAH LLKYDSSYGVYASSVDCAQGKLIVDGVETAYISSSDPSKIPWGDLGVDVVVESTGLFR SGDKAGAHIKGGAKKVIISAPGKDVDATFVMGVNHTSFDPAKHNIFSNASCTTNCLAP PAKVIHEKFGIGHGLMTTVHSYTSDQRILDAPHKDLRRARTAGASIIPTTTGAAKAVA LVLPDLKGRFDGISLRVPTPSVSLVDLTMTLEKPADTEALRQALVEAAQGELKGIMAC EAKPLVSIDFKGNPHSSIVDLEYTSVQPGGLAKLMAWYDNEWGYSCRTADLAAYVGAR L" misc_feature 611686..612618 /locus_tag="Deba_0537" /note="glyceraldehyde-3-phosphate dehydrogenase, type I; Region: GAPDH-I; TIGR01534" /db_xref="CDD:188153" misc_feature 611686..612099 /locus_tag="Deba_0537" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 612112..612582 /locus_tag="Deba_0537" /note="Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800" /db_xref="CDD:145777" gene complement(612727..614886) /locus_tag="Deba_0538" /db_xref="GeneID:9492986" CDS complement(612727..614886) /locus_tag="Deba_0538" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: dde:Dde_1077 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Q313L8 methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003806504.1" /db_xref="GI:302341975" /db_xref="GeneID:9492986" /translation="MNNFKLGTKIGIGFGLLILISVALGGLAIFNMSGVSAESTSLAE AYVPEVALSNNIERHALSALLENRGYNYTLEKPYLDQGQKDLTEARKYLAEAAKLAQE HPELAALAPAVEKSQRALQGYENLMQQSVKNNAVIADDRAEMDVHAVELVTAITALRD YQIDALRKQIAAGASPAELQERLNKLELVDKAIDMGTVVRIANLKAQAYRKLELVGQA LGNFELIGANLNKVKAQSTKQLNIDQVNDSLQAAQDYKGHMENLFKVWTANEQVTKER RKYSTEFLSSVREMANSGIAHTNEVAEEAARNLSLASWVMVVGLLVAVVLGALIAMII ARMITAPVKAAALAVGTAARGDFTFKIDEKHLSRGDELGGMLRDVQQMAQNLSKTVRQ VMESAATVSNAANDISSGNQDLSQRTQEQASAIEETASALEEMTSSVRQNAENARQAN ELAKRTSELAQQGGEAVNQTIEAMAAVSESSGKIAEIITVVNEIAFQTNLLALNAAVE AARAGEAGRGFAVVAGEVRNLAGRSAQAAKEVQTLITDSVNKVRQGNESVEASGNLLT DIIANVQDVADTVAEITAASQEQAQGVEEINRAVSQMDEAVQQNAALVEEAASSSEEM AAAAQEMSDQMSQFKVEGGASAQATRRDKPAQQRPMAQATRPRPAAKAAATPANPKPA SKPAAKAGDGPAKAAPAKKAGGDDFFEDVTLEGFEEF" misc_feature complement(613480..>613800) /locus_tag="Deba_0538" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" misc_feature complement(613045..613713) /locus_tag="Deba_0538" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature complement(613045..613548) /locus_tag="Deba_0538" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 615012..615956 /locus_tag="Deba_0539" /db_xref="GeneID:9492987" CDS 615012..615956 /locus_tag="Deba_0539" /note="COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR007197:IPR016431; KEGG: glo:Glov_2082 radical SAM; PFAM: radical SAM domain protein; SPTR: B3E3H9 radical SAM; PFAM: radical SAM superfamily" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003806505.1" /db_xref="GI:302341976" /db_xref="GeneID:9492987" /translation="MNELRFPAPEAYERAAMRLRSWMKACVLCPRRCGVNRLAGQRGF CRAGRLAAVNTYQLHPGEEPPISGQHGSGTVFFAGCTLACRFCQNYAISQEGWGDELE APQLARIFLELQEAGAHNINLVTPTPHAAAILEALALARRAGLRLPIVYNTSGYERPA VLRQLAGLIEIYLPDYKYADESAARRLSNAPGYAKYCSMALTEMFDQVGNLDYDDDGV ATQGILVRHLVLPENLAGTAWVMRELTRICGRRVAVSLMSQYFPAYKAAQTKGVGRPI SAVEYAAARQALDEAGVGLAFVQSLSSATDELTPRFRR" misc_feature <615078..615908 /locus_tag="Deba_0539" /note="Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]; Region: PflX; COG1313" /db_xref="CDD:31504" misc_feature 615231..>615395 /locus_tag="Deba_0539" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" gene complement(616072..618183) /locus_tag="Deba_0540" /db_xref="GeneID:9492988" CDS complement(616072..618183) /locus_tag="Deba_0540" /note="COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR013767:IPR000160:IPR001633:IPR000014:IPR 000700; KEGG: tmz:Tmz1t_3959 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; SPTR: C5S5K8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase/phosphodiesterase" /protein_id="YP_003806506.1" /db_xref="GI:302341977" /db_xref="GeneID:9492988" /translation="MIDQVNKPRPKQSPEYRQRRAPMAEPGPATAFFRRAAGTPRWRV EHDQAAWPTGCPGPEDIERFLAQRRAALGLEPAVDLGGCLAAALGPEPWAVQWADSQG RRRLLLVAVTKDDCRARGLAGVIVDQTGQQAHRERAELLDQVLECASEGIMVTDRDGH IIMVNRGFSELTGFDAVEVIGRTPEFLYPHDDHHGGHGQIWRELAATGRWRGEVASLR KNGQAYPQLLHLQAIKGPGGQVRNYVGDMHDITSIKRTEEQIAHQVYHDPLTGLPNRL LFQDRLEMALAHAKRQRDGVAVLFMDLDNFKHVNDSLGHAAGDKLLVAVARRLLAKVR REDTMARLGGDDFLFLLPETAGEDEAGQVAQQMLDELARPFRLGGKKLHIRASVGIAL FPNDGQTPEKLIANAELAMYRAKEGCREGYCFFEPALNQKVRHRLELENRLRTALQKE EFLVCYQPKIDLASLRTVGVEALVRWRRPGVGLISPGEFIPVAEETGLIIPLGRWVLR QACQQAQRWREQGRQLSVAVNLSPRQLLDPDLTRAVAEALEESGLPPEQLELEITENA VMPSLELALGRLAELAALGARLAMDDFGRGYSSLYHLHRLPIDILKVDQYFIKEMTPH SRVSSIVEAMVAMGRSMGLVVVAEGVENKRHLEMLAGMGCHQLQGFLFSRPLEPPRLE DYLAREEAASGPPWLGASRRQ" misc_feature complement(617404..617769) /locus_tag="Deba_0540" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(617434..617742) /locus_tag="Deba_0540" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(617521..617523,617536..617538, 617614..617625,617662..617664,617680..617682, 617692..617694)) /locus_tag="Deba_0540" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(617494..617496,617500..617502, 617584..617589,617596..617598,617620..617622, 617632..617634)) /locus_tag="Deba_0540" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(616936..617391) /locus_tag="Deba_0540" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(617149..617151,617278..617280)) /locus_tag="Deba_0540" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(617146..617157,617161..617163, 617227..617229,617239..617241,617251..617256, 617263..617265)) /locus_tag="Deba_0540" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(617086..617088,617173..617175)) /locus_tag="Deba_0540" /note="I-site; other site" /db_xref="CDD:143635" misc_feature complement(616144..616863) /locus_tag="Deba_0540" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(618192..619130) /locus_tag="Deba_0541" /db_xref="GeneID:9492989" CDS complement(618192..619130) /locus_tag="Deba_0541" /note="COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dvm:DvMF_1514 diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: B8DLT6 Diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_003806507.1" /db_xref="GI:302341978" /db_xref="GeneID:9492989" /translation="MKWFWIKLSVRARLAGLLALVVIGPVTAILLLEPGTKQEFGAYL GVYLAVSITLWWPAAGLIGRLVVLDDLARINRVCRALREGSRPELLELPNESDEEHEL LELQRNINFMVRSVAGRESSLRDHLKENVRERSRLWELSIRDALTSLYNRRYFDRKLR EVVEEASASGERACLMVIDVDNFKLVNDTYGHQTGDRLLASLGATIQASVRQERDIAC RYGGDEFVVIFRQAEPAAAVEAARRVRSRYLAEWTGETSLSMGLAPLTPDHAHNPGQI AEGWLAAADQAVYKAKELGGDRLALNDQDGLRAVSL" misc_feature complement(618231..618704) /locus_tag="Deba_0541" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(618462..618464,618594..618596)) /locus_tag="Deba_0541" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(618459..618470,618474..618476, 618543..618545,618555..618557,618567..618572, 618579..618581)) /locus_tag="Deba_0541" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(618417..618419,618486..618488)) /locus_tag="Deba_0541" /note="I-site; other site" /db_xref="CDD:143635" gene complement(619255..620061) /locus_tag="Deba_0542" /db_xref="GeneID:9492990" CDS complement(619255..620061) /locus_tag="Deba_0542" /note="COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: dal:Dalk_2736 hypothetical protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: B8FKQ6 Putative uncharacterized protein; PFAM: Nickel uptake substrate-specific transmembrane region" /codon_start=1 /transl_table=11 /product="Nickel transport complex, NikM subunit, transmembrane" /protein_id="YP_003806508.1" /db_xref="GI:302341979" /db_xref="GeneID:9492990" /translation="MKKLLGLTALALMAVLCSGLPALAHFQMIYTPEAALEKGGEIPL KLVFTHPFEAGHTMDMGQPKEFFAVHKGKKTDLLATLKPIEWTSLTNSGKAFETTYNM RGMGDWIFVVNPAPYLEPSEGAYIQQITKVVVNAGGLPTDWDAELGLPAEIVPLDKPY ALWTGNVFRGVVKGQGKPVPFAEVEVEYLNHPPVPGKNEFQKEALATAPQDAFVTMTI KADENGVFTFGIPKAGWWGFAALGVGPDDKFEGKENSQDAVIWVKAVDMK" misc_feature complement(619270..620061) /locus_tag="Deba_0542" /note="ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: CbiK; COG5266" /db_xref="CDD:34863" misc_feature complement(619324..619998) /locus_tag="Deba_0542" /note="Nickel uptake substrate-specific transmembrane region; Region: NikM; pfam10670" /db_xref="CDD:151174" gene complement(620171..620488) /locus_tag="Deba_0543" /db_xref="GeneID:9492991" CDS complement(620171..620488) /locus_tag="Deba_0543" /note="KEGG: dsa:Desal_0113 hypothetical protein; SPTR: C6BVH0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806509.1" /db_xref="GI:302341980" /db_xref="GeneID:9492991" /translation="MKRALTLFVVAAIVSLASVALAHTPLCTCYQNGDGTVTCEGGFS DGSSAAGVTMRVKDASGKELITGAINDSNEFTFKKPDGDYTVVFDAGEGHSIVINGKD IVE" gene complement(620485..622956) /locus_tag="Deba_0544" /db_xref="GeneID:9492992" CDS complement(620485..622956) /locus_tag="Deba_0544" /note="COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011619:IPR011642:IPR011640:IPR 006073:IPR005225:IPR003373; KEGG: dal:Dalk_2738 ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: B8FKQ8 Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein B" /protein_id="YP_003806510.1" /db_xref="GI:302341981" /db_xref="GeneID:9492992" /translation="MSDQILAALAGQPNSGKSTIFNMLTGARQFVANYPGVTVEKKVG YFSEGGRKIELVDLPGTYSITSYSMEERVTRDFILHDQPTLVVNVVDAANLRRNLYLT FQLLEMERPLLLDLNMIDVARKHGQEIDQDELARRLGVRVLVSDGKRGVGRVELRQAI AEAQGAVSNFRIDYGPLEPALERLQELLAAQPGLAGRCPVRWLALKLLEGDEKAQELA AKHAAQDWPELQKSLEAERQRFQQEHGLPTFRHIAFRRHETAEEIGRAVIHHKNQRGR SFTDMADRLLCHRVAGPLIMCGVFYLLFELAVNQGGQLAAMVTPWLSRGQGWLESFLP VAGFMEEPLISSLASWFMTSVSALLVYLPQFFILFSLIAILEDVGYMPRMAFMLDRIF RRFGLHGNSTLPFILGGIYVGGCAVPGVMACQAVPDERARLATILTVPLMNCLAKTAF YIMLVEAFFPEHKAGAMFFISTITLVMALPIARILTMTVLKGRETAPFIMELPTYHLP TLRSVLTRAFERIWTYIRKVLTIVAAVAVVIWALLQFPGAPAQIQAEFEAQGVAAKAA FAKAIAGTPLAAALPGEAELMSLFSFREAYRADKAAAAGDAVSSKAVDERYQAMNPVF FEAVKDRRAKTYKAFNKLRQQRDGLWRQMQQARINSSILGRMGKFLEPVSQWAGFDWR VNVAMLSSFAARESATATFKALYGIGNDGKYDGSAMLGSGTDKPITPLNATALMIFMA LFPPCLATTIMVRVATRRYSWMLFSFAYPSLLGILAASLIYTGGGALGLSGWQAMWAY FGLACVFALIMGLLPETKRTKEVVQ" misc_feature complement(622432..622944) /locus_tag="Deba_0544" /note="Ferrous iron transport protein B; Region: FeoB_N; pfam02421" /db_xref="CDD:190305" misc_feature complement(622468..622932) /locus_tag="Deba_0544" /note="Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this...; Region: FeoB; cd01879" /db_xref="CDD:133280" misc_feature complement(622903..622926) /locus_tag="Deba_0544" /note="G1 box; other site" /db_xref="CDD:133280" misc_feature complement(order(622513..622521,622597..622599, 622603..622608,622900..622911,622915..622917)) /locus_tag="Deba_0544" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133280" misc_feature complement(622834..622848) /locus_tag="Deba_0544" /note="Switch I region; other site" /db_xref="CDD:133280" misc_feature complement(622843..622845) /locus_tag="Deba_0544" /note="G2 box; other site" /db_xref="CDD:133280" misc_feature complement(622777..622788) /locus_tag="Deba_0544" /note="G3 box; other site" /db_xref="CDD:133280" misc_feature complement(order(622708..622713,622723..622779)) /locus_tag="Deba_0544" /note="Switch II region; other site" /db_xref="CDD:133280" misc_feature complement(622597..622608) /locus_tag="Deba_0544" /note="G4 box; other site" /db_xref="CDD:133280" misc_feature complement(622513..622521) /locus_tag="Deba_0544" /note="G5 box; other site" /db_xref="CDD:133280" misc_feature complement(621583..621885) /locus_tag="Deba_0544" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" misc_feature complement(621397..621561) /locus_tag="Deba_0544" /note="Ferrous iron transport protein B C terminus; Region: FeoB_C; pfam07664" /db_xref="CDD:191804" misc_feature complement(620698..620985) /locus_tag="Deba_0544" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" gene complement(622953..623177) /locus_tag="Deba_0545" /db_xref="GeneID:9492993" CDS complement(622953..623177) /locus_tag="Deba_0545" /note="COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167:IPR008988; KEGG: dds:Ddes_0645 FeoA family protein; PFAM: FeoA family protein; SPTR: B8IYF8 FeoA family protein; PFAM: FeoA domain" /codon_start=1 /transl_table=11 /product="FeoA family protein" /protein_id="YP_003806511.1" /db_xref="GI:302341982" /db_xref="GeneID:9492993" /translation="MTLDFLQPGMAGKVLGLTAVGDLGQRLMDLGFHPGVELKVIRNA PLRDPLEVQMLGYFISLRHNEARFVEVERL" misc_feature complement(622959..623177) /locus_tag="Deba_0545" /note="FeoA domain; Region: FeoA; cl00838" /db_xref="CDD:193951" gene 623506..625788 /locus_tag="Deba_0546" /db_xref="GeneID:9492994" CDS 623506..625788 /locus_tag="Deba_0546" /note="COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR001757:IPR000695:IPR 006416:IPR018303:IPR000150; KEGG: dde:Dde_0489 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; SPTR: Q315V6 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_003806512.1" /db_xref="GI:302341983" /db_xref="GeneID:9492994" /translation="MPVDIEAMAPIQIKHSLPGRLRLHARALRRRPQACRLAVEFLQS IDGVLWVRCNPAIGGLVLAFRPAELTPERIIQALGGLWGLNAPARCRPAKPPAGQAPA CPACQSDSADLEQADISTPRRRFLSIGAVLAVTALRSRLLGAVVAQGLFSPLGLIAAA FALPLAAKGLRELLKGRPGLDSLLGGACLAAALSGQAMAALEILFIDSGAEWLRAWVT QRSRRAIAEILEITSHHTFMIVDGVEVEVAVEAVQPGDVVVVHGGEKIPVDGVVVEGH ALLDESSINGRAELADRSAGDQVFAGTMARQGVVKIRAQRVGDQTYLARILALVESSL QNRAPVEQVADRLGRATMRLGLTATALTLLLTGSFWRAFSVLLVMACPCATVLAASSA LSMAINNAARRRVLIKGGRYLEELSQTRVICFDKTGTLTDTQPILREIFSYCELDDDQ IVELAHAAELHQHHPIAGAIQREAARRGLRRREHAVCQYHLGRGVEAKVAGQDILVGN HKLMEQCGVDVEPARRDALHMTDRGRTVLYLARDGHLAALLAISNRTRPEAPAMLAGL RRLGFERIAMITGDELCTARGLADELGMDVCCYSVMPEEKAELVRAERQRGGKVVMVG DGINDALALAEADVGLAMGAGGSELAIEAADIAMVDDNLASVVFVCALSRQTMRVIGQ NFWIATGSNIGGLILGALGLLSPVAAGMLHMAHTAGVLANSARLLRFAPPALATPEQP GPEPVVAPSAAPATDNELAA" misc_feature 624112..625674 /locus_tag="Deba_0546" /note="heavy metal translocating P-type ATPase; Region: ATPase-IB_hvy; TIGR01525" /db_xref="CDD:188152" misc_feature 624112..624750 /locus_tag="Deba_0546" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature <625225..625518 /locus_tag="Deba_0546" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 625824..626183 /locus_tag="Deba_0547" /db_xref="GeneID:9492995" CDS 625824..626183 /locus_tag="Deba_0547" /note="KEGG: dde:Dde_0490 hypothetical protein; SPTR: Q315V5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806513.1" /db_xref="GI:302341984" /db_xref="GeneID:9492995" /translation="MTSLIDELLYLRRYLIVAHHLPGRIRIRLSPAVLSEPRAKTLAA SQGLRGALGALRGVRSVRANAKALSTTIEYETAVVSASQLHELFTSRDPARVRALMEG ILQNVGLSSTATEGVAP" gene 626180..626815 /locus_tag="Deba_0548" /db_xref="GeneID:9492996" CDS 626180..626815 /locus_tag="Deba_0548" /note="KEGG: dde:Dde_0491 hypothetical protein; SPTR: Q315V4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806514.1" /db_xref="GI:302341985" /db_xref="GeneID:9492996" /translation="MSETSQQVQMEPPRPPAGQECADEACGGEQGGQKNAAGPAGPMP GYPAMGGYPGPHPGWWAPPYGYYPGPYGPPMGQGYAPAMPAMGYQGPAQAPPPPQAEA QHGKSGGHGGSEGCSCHEQAGAGAMEQNQMGKMFGLMGDIVSGKVNASTVTSLLGGCS DQFWKGALVGAGLAFLLTNPTVRQGLTGLWGGLFGGAKAEDEPCAAPAGEE" gene 626819..627259 /locus_tag="Deba_0549" /db_xref="GeneID:9492997" CDS 626819..627259 /locus_tag="Deba_0549" /note="KEGG: dsa:Desal_0107 hypothetical protein; SPTR: C1SFS5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806515.1" /db_xref="GI:302341986" /db_xref="GeneID:9492997" /translation="MSAHVKHLASASGAAASSAGYRGLWALGGLGMVIGAAVAVAKNI RLVKEGKMQSDQAVGETLKESLGTGLTTAAAGAAAGVLGLSGALGLVGVAALGVGVKY LWDSALTPPAAAPAKPAAKASAKAETKPKAKAKAVKAPATAREE" gene 627264..627539 /locus_tag="Deba_0550" /db_xref="GeneID:9492998" CDS 627264..627539 /locus_tag="Deba_0550" /note="KEGG: dde:Dde_0493 hypothetical protein; SPTR: C1SFS4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806516.1" /db_xref="GI:302341987" /db_xref="GeneID:9492998" /translation="MHDQRNHLAQTQTQAPPADGGWLSFNDPCYLRGLLIGAGVALVL GNPAVQKAVVRGAMKLWAGLQYSIEEVKEQIEDVKAEMAVAKQGEQE" gene 627601..627798 /locus_tag="Deba_0551" /db_xref="GeneID:9492999" CDS 627601..627798 /locus_tag="Deba_0551" /note="KEGG: rru:Rru_A1028 hypothetical protein; SPTR: Q2RVL6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806517.1" /db_xref="GI:302341988" /db_xref="GeneID:9492999" /translation="MGRQNNALARKRSLAKLGMSLSLGALVVTAFAGGKRAKNWHILA GGALVGFSAWHHALYGKPGRS" gene 627802..629928 /locus_tag="Deba_0552" /db_xref="GeneID:9493000" CDS 627802..629928 /locus_tag="Deba_0552" /note="COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR001757:IPR006416:IPR 018303:IPR000150; KEGG: dde:Dde_0495 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; SPTR: Q315V0 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_003806518.1" /db_xref="GI:302341989" /db_xref="GeneID:9493000" /translation="MPSAKNLGRGPSVVHEANGRIRLRGRLFADPALDHAYVEAMIMA LPGVIEARLNAGAACLVARHDGRPGVREAILAALGDLPDEAFLPGRRRKREGLDKAAA LGLLALGAKRLPRPLGGLLSWLAAAPVIAGGLETLINRGLKVEVLDAAAVSALLLRGD YRAAGAIVALLALGRHLEQTSEEKSSALLKSLLAVGDEDVSVERDGAEIRQPAAKLAI GDIVVCGPGDKIVVDGQVTWGQAELNQSSITGEARPVAVEVGDRVISGATVQDGKIKI RAQQVGRHTAMARVGSFIETAVRHQSEPEKRSARLADRLTPVSLGLAGGLLLLTGDTR RAVSVLTVDFGCALKLAAPLAVKTAMYNAGRRGVLIKGARALEALSRVDAVVFDKTGT ITHGDLEVTDVVPLDGMSAEELLALAAGAEEHYSHPVGRAVVRAARRRGLPQPALSQV DFIVAHGVSAYVADQRVLVGSLHFLAEDEGVDCSTAEGLCASLRDQGKSILYVGHENH LEGVIALRDRLRPEAGAVLAGLRAAGVEELVVLTGDHRQTAQALARDLPQLDAVRWEL RPEDKAAIVAELQARGRVVAFVGDGVNDAPALVTADVGVCMPAGAELARDAAQVVLLQ DDLWGLLSARQLAARFQATVGQSFFAAIGLNCAIMLAAAAGRLSPLGAALLHNLSTIG ILGHAAAANLRPAETGPRALPQERVS" misc_feature 628390..628935 /locus_tag="Deba_0552" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature 628399..629829 /locus_tag="Deba_0552" /note="HAD superfamily, subfamily IC; Region: ATPase_P-type; TIGR01494" /db_xref="CDD:188146" misc_feature <629410..629667 /locus_tag="Deba_0552" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 629925..630647 /locus_tag="Deba_0553" /db_xref="GeneID:9493001" CDS 629925..630647 /locus_tag="Deba_0553" /note="InterPro IPR007167; KEGG: dsa:Desal_0100 FeoA family protein; PFAM: FeoA family protein; SPTR: C6BV34 FeoA family protein; PFAM: FeoA domain" /codon_start=1 /transl_table=11 /product="FeoA family protein" /protein_id="YP_003806519.1" /db_xref="GI:302341990" /db_xref="GeneID:9493001" /translation="MSYLSLDRAPVSTPLKLVGATDRGLAERLARLGLEPGARLTRLP DEVRLQPARVAGPRGEAVLSANMAGSLLVHLDDGRKLPLLDLAPGEEGHVEGLTVGGR LARAFEVLGLMENDRLRLLRRLPPMEYVVLLEGRRRARLSEGMAAKVWGQVAGRKQQL ATAQSGHPFTVLEFLGGPNFAAAMAALGLAVGSSLELETVEPAQSVGQKAAAAVALAT AGGLRLYLDQKSARAVLVQPAG" gene 631045..633042 /locus_tag="Deba_0554" /db_xref="GeneID:9493002" CDS 631045..633042 /locus_tag="Deba_0554" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090; KEGG: dal:Dalk_0094 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FKI9 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003806520.1" /db_xref="GI:302341991" /db_xref="GeneID:9493002" /translation="MSVLARMGGGVGGRMIVMGVSLVVTCALITLGVVLWQGALLQEQ VAEETDKLVAEQVAKQVQSAYFVCQAQQASALREIKLGLRMASHVAAQHGQPNLLTDQ PQPWRAVDQFSKHASDISLPTLALGQAAIAVERDPARPSAIVDGVSQVTGADCTIFQW APQVDGMLRVATTVLGKDKRRAVGTYIPRISDGQPNPVLAQVLAGKSYFGRAFVVDAW CVTAYAPLRGPDGAVLGMIYVGLKESEILAPARRVLLGMQVGKDGYAWALGGTGDQRG NYIISKGGQNDGQNILGATDASGRQFVKQTLDMAVTAKPGQVNIMRYPWQNPGESAPR TKISAFTYFPQWDWVLGVGAYEEEFQDACKRVEASFAGMTRNVALGAGLAVLLATAVG WLVARRLSGPLANLSQELSLHAGGVAQASTQIASASQNLSQAVAQQAAGLEQSAASLE EVAALAQGSLRHADEAEAVTRDAGHIVGRAGQTMDQLKTAMLKINQASDQMSGIIRTI DEIAFQTNLLSLNAAVEAARAGEAGAGFAVVAQEVRALALRAAEAAKGTQGLIEDNVG RVRGGQELVDQADQAFADLAQAAGRTEALMEQLTADFKSQASGLEQISQAMTEMDQAT QQAMATAEESAAAAEELAAQADSMDGMSGQLLRVVRGADAG" misc_feature 631762..>632154 /locus_tag="Deba_0554" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG4564" /db_xref="CDD:34202" misc_feature <632332..632886 /locus_tag="Deba_0554" /note="methyl-accepting protein IV; Provisional; Region: PRK09793" /db_xref="CDD:182079" misc_feature 632431..>632607 /locus_tag="Deba_0554" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 633198..634244 /locus_tag="Deba_0555" /db_xref="GeneID:9493003" CDS 633198..634244 /locus_tag="Deba_0555" /note="COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: gbm:Gbem_3415 polyprenyl synthetase; PFAM: polyprenyl synthetase; SPTR: B5EBB6 polyprenyl synthetase; PFAM: polyprenyl synthetase" /codon_start=1 /transl_table=11 /product="polyprenyl synthetase" /protein_id="YP_003806521.1" /db_xref="GI:302341992" /db_xref="GeneID:9493003" /translation="MDPISLTLSLDGPPEAGQVEPVGGALDGGQVKARVLELAAPADE ALGQTLSCHVPFIKEVSDYIIFSGGKRLRPVLFMLAAQAVGGAGDFRRAAIFEYLHAA TLLHDDVIDEAGLRRGRPAARKLYGNEAVILVGDFLFSKSYSLAAEEPDHRFIQALTD CTTHMAEGQVLELLRTDDLELSRQKYLEVIVAKTAVLLAAACQMGAIHAGASPEVENA LYRYGLSLGVAFQLVDDALDYVGQEHEFGKPVGHDLAEGKITLPLIHVRDAADAQARQ RLLGLARASRADRQALAQAKELIVQGGGVAHTFAQARRYARHAQQALEELPAANDAWQ TLFALPHYVVNRRN" misc_feature 633282..634241 /locus_tag="Deba_0555" /note="Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142" /db_xref="CDD:30491" misc_feature 633354..633992 /locus_tag="Deba_0555" /note="Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685" /db_xref="CDD:173833" misc_feature order(633492..633494,633501..633509,633513..633521, 633525..633530,633543..633548,633702..633704, 633711..633713,633774..633779,633786..633788, 633897..633902,633909..633911,633939..633941, 633954..633956,633969..633971) /locus_tag="Deba_0555" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature 633501..633530 /locus_tag="Deba_0555" /note="chain length determination region; other site" /db_xref="CDD:173833" misc_feature order(633516..633521,633528..633530,633543..633548, 633711..633713,633774..633776,633897..633902, 633909..633911,633939..633941,633954..633956, 633969..633971) /locus_tag="Deba_0555" /note="substrate-Mg2+ binding site; other site" /db_xref="CDD:173833" misc_feature order(633516..633521,633528..633530,633543..633548, 633774..633776,633897..633902) /locus_tag="Deba_0555" /note="catalytic residues [active]" /db_xref="CDD:173833" misc_feature order(633516..633521,633528..633530,633543..633548, 633711..633713,633774..633776) /locus_tag="Deba_0555" /note="aspartate-rich region 1; other site" /db_xref="CDD:173833" misc_feature order(633534..633578,633918..633923,633939..633956, 633963..633977) /locus_tag="Deba_0555" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature order(633897..633902,633909..633911,633939..633941, 633954..633956,633969..633971) /locus_tag="Deba_0555" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene complement(634297..635946) /locus_tag="Deba_0556" /db_xref="GeneID:9493004" CDS complement(634297..635946) /locus_tag="Deba_0556" /note="InterPro IPR000305; KEGG: cyh:Cyan8802_3969 group I intron endonuclease; PFAM: excinuclease ABC C subunit domain protein; SMART: excinuclease ABC C subunit domain protein; SPTR: C7QQW2 Group I intron endonuclease; PFAM: GIY-YIG catalytic domain; TIGRFAM: group I intron endonuclease" /codon_start=1 /transl_table=11 /product="excinuclease ABC C subunit domain protein" /protein_id="YP_003806522.1" /db_xref="GI:302341993" /db_xref="GeneID:9493004" /translation="MPRKKTLDEIIFDFKKAHGNKYDYSEVVYVNCSTKVIVICPEHG KFSITPNHHAKGVGCRQCYHESQKITLVVFKERAAQYFDQHYDYSFVPPMPLTHKKIK IFCKTHNRFFFQNPRNHILGHTGCPECIASKFFDRTCRGSKIKSNSEMIQRFEERAKL VHGAKYRYDEFFPLDNTKKGKIVCPTHGEFWQTQSNHLRGSSCPHCAKKLKFAGSFKE KCAKLSVNYWRALKRRQAGLDDSHIFDKGKLVGTRSTEEIIVYGQKFSNLAAAIREYD PPASSTTIRRLIKSGLSPDDAFRYIPNPGYTNGIIYLIVHSSSQKQYVGLTTQTIERR WEDHISQANLGNIKNKHSLHAAIRNSGASAFSIAIIDHGTTKHDLEEKEKFWINMLNT RIPYGYNISRGGVSGGSNTKTVTLDGKKFKSAKSAAKYVAEKQNISFAAAKRRVSKNR INVKKRATTGNSLVKGKCYKAWSYIKHCVLNSNSKSYDHGVSLFESWSSDFMCFYRDV GEPAESNMVFARIDKDKGYFPGNCVWMTRKQLGLLRRMSSK" misc_feature complement(634765..635025) /locus_tag="Deba_0556" /note="GIY-YIG catalytic domain; Region: GIY-YIG; cl01061" /db_xref="CDD:194023" gene complement(636245..637027) /locus_tag="Deba_0557" /db_xref="GeneID:9493005" CDS complement(636245..637027) /locus_tag="Deba_0557" /note="COGs: COG0288 carbonic anhydrase; InterPro IPR001765; KEGG: pca:Pcar_2939 carbonic anhydrase; PFAM: carbonic anhydrase; SPTR: Q3A0D3 carbonic anhydrase; PFAM: carbonic anhydrase" /codon_start=1 /transl_table=11 /product="carbonic anhydrase" /protein_id="YP_003806523.1" /db_xref="GI:302341994" /db_xref="GeneID:9493005" /translation="MKKMMMKWSLALMLVLAVAALAWASGGESVANPSPDQVIEMLSQ GNARFVAGQATGSHRDAARLRQAAAENQGDHAYATVITCSDSRVPVEILFDVGVMDIF VIRVAGNVVQTDEAGSIEYGLAHVKTPLLVVLGHTQCGAVMAVANQLQGHGHALERNI PPLVAPIVPAVQRAMSAHPDQKGLAVLPAAIEENVWQGIHDLFMRSPASRDLVHGGKV KVVGAIYDVGSGEVHWLPQAKVAEILAQVERDPGRAMEAMAQ" misc_feature complement(636323..636925) /locus_tag="Deba_0557" /note="Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeC; cd03378" /db_xref="CDD:73356" misc_feature complement(order(636353..636355,636611..636613, 636620..636622,636650..636652,636665..636667, 636722..636724,636731..636733,636767..636775, 636779..636781,636800..636802,636806..636808)) /locus_tag="Deba_0557" /note="active site clefts [active]" /db_xref="CDD:73356" misc_feature complement(order(636611..636613,636620..636622, 636773..636775,636779..636781)) /locus_tag="Deba_0557" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:73356" misc_feature complement(order(636332..636334,636338..636340, 636344..636349,636353..636355,636665..636670, 636677..636682,636713..636715,636719..636721, 636725..636733,636746..636757,636761..636763, 636767..636778)) /locus_tag="Deba_0557" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73356" gene complement(637571..638350) /locus_tag="Deba_0558" /db_xref="GeneID:9493006" CDS complement(637571..638350) /locus_tag="Deba_0558" /EC_number="1.3.99.15" /note="COGs: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); InterPro IPR002731:IPR008275; KEGG: adg:Adeg_1706 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; PRIAM: benzoyl-CoA reductase; SPTR: C6PAT9 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: BadF/BadG/BcrA/BcrD ATPase family; TIGRFAM: CoA-substrate-specific enzyme activase" /codon_start=1 /transl_table=11 /product="CoA-substrate-specific enzyme activase" /protein_id="YP_003806524.1" /db_xref="GI:302341995" /db_xref="GeneID:9493006" /translation="MTYFAGVDVGSLSTDAVIVDEAENIVAYAVVETGANSTDAAQRA MAQAAQKAGLTPEDIARTVGTGYGRVSVPGAQKKVTEITCHGVGSAHLFPQAQTVIDI GGQDSKVIRLGPGGKVSDFVMNDKCAAGTGRFLEVMAAKLQVGLDQMGPLSLSAQGEP VKISSVCTVFAESEVISLVAQNHPREQIIKGIHKAIVNRVWNMVKSLGEPGVTTMSGG VAKNKGVAALLEERLGAKLLIHDEPQIVGALGAALLARRQA" misc_feature complement(637613..638344) /locus_tag="Deba_0558" /note="FGGY family of carbohydrate kinases, N-terminal domain; Region: FGGY_N; cl09121" /db_xref="CDD:195797" gene complement(638353..639687) /locus_tag="Deba_0559" /db_xref="GeneID:9493007" CDS complement(638353..639687) /locus_tag="Deba_0559" /EC_number="1.3.99.15" /note="COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: afu:AF1958 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (HgdA); PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; PRIAM: benzoyl-CoA reductase; SPTR: O28321 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (HgdA); PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component" /codon_start=1 /transl_table=11 /product="benzoyl-CoA reductase" /protein_id="YP_003806525.1" /db_xref="GI:302341996" /db_xref="GeneID:9493007" /translation="MSLIKKIEYQFMKDVGAGLAMKLAGAAKKKGQGQPNPHLGPRLG SSAMLQRIIARHYFLSRFAKGAMPIAWVTSGAPVELLRAFGFYTIYPENHSALCGAAK RGAALCQVAEEHGYAPELCSYARIDLGHLFSGKTPVGHLPKPDLLFCTTNICQTVGYW YKAIAHYLDIPLIQLDTPFNFTDIVQPDIDYMVEQLQEIVEDLERYTRRRFDYNEFVR IVGLSRDTSMLWGEVLDTMKTKPSPMTIFDAFTQMLPVVSLRGLPVAKNYYEALLAEL QQRVRDGVGALKNERKRLMWDNIAVWHKLNALSNVFAERDMNFVVATYTSSWSASQGL MDVSDPFTGIAKTYSGIILNNNLNHRLKTMQRAIADYHVDGLVIHSARSCKPYSVGQY DLKRLLLAQSNIPSVVIEADIADERVWSEEQVRTRLEAFFESLEDAPGREAA" misc_feature complement(638389..639555) /locus_tag="Deba_0559" /note="N subunit; Region: benz_CoA_bzdN; cl11464" /db_xref="CDD:143741" misc_feature complement(638383..639474) /locus_tag="Deba_0559" /note="2-hydroxyglutaryl-CoA dehydratase, D-component; Region: HGD-D; pfam06050" /db_xref="CDD:191439" gene complement(639712..640800) /locus_tag="Deba_0560" /db_xref="GeneID:9493008" CDS complement(639712..640800) /locus_tag="Deba_0560" /note="COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: dal:Dalk_0249 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: B8F8S6 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component" /codon_start=1 /transl_table=11 /product="2-hydroxyglutaryl-CoA dehydratase D-component" /protein_id="YP_003806526.1" /db_xref="GI:302341997" /db_xref="GeneID:9493008" /translation="MTASILPRRRYIQEQAAKGRRPVGVLPAQYPKEILWALDILPVE IWDPPLEVSSAGAHLQPYICSVVQGGLELILQGRADQMEAFLFPHTCDSIQNLATVVN DYIGLDRPCYFFYHPKAPYRPSSHEYYYGQINGLAQRLAPQFGPLDEAKLWSAVRQGA KVAELLRQLYMLRAQNNLRCSAVEFYELIRLGEYLHPDDFIPALEDFMAERSGPGPDG PAVVLSGVLPNPVALLSALDELGVRVGHDDLLACSRRMLAPPAHDPDPLRQLAKAYFG LPPCSTKNSPLGQRLEFLRVILDRSASRGVIFNLVKFCETELFDAPQLIEALKSQGVP TLFMETELNQGLSGQLATRVEAFVEMLG" misc_feature complement(639766..640761) /locus_tag="Deba_0560" /note="N subunit; Region: benz_CoA_bzdN; cl11464" /db_xref="CDD:143741" misc_feature complement(639718..640713) /locus_tag="Deba_0560" /note="2-hydroxyglutaryl-CoA dehydratase, D-component; Region: HGD-D; pfam06050" /db_xref="CDD:191439" gene 640915..641907 /locus_tag="Deba_0561" /db_xref="GeneID:9493009" CDS 640915..641907 /locus_tag="Deba_0561" /note="KEGG: ppg:PputGB1_3052 nonspecific acid phosphatase; SPTR: B0KGE3 Nonspecific acid phosphatase" /codon_start=1 /transl_table=11 /product="nonspecific acid phosphatase" /protein_id="YP_003806527.1" /db_xref="GI:302341998" /db_xref="GeneID:9493009" /translation="MTNKRCFRGVGGRLRAVALVVVLALALAGGAAWAGDELASWQGP ARQVLLDYITAVTTPGGPDFIPPVERKAAFDVDGTLIAEKPVFLPLELSFQRLGQVCP KGGPAPEGMTDLCAAHARGDRLALERQYIAQALTKPFVGMSFDDYQAMARRLMDQGVN PANGKPYRRLIYPPMLELIELLHEKGFVVYLCSGSPNFFLRAISADYLGVDPDRCIGT TYQAVVHERGGRIAFSRGAKVESLNLELQKAVNLLQRLGGPPVLAFGNSDGDSQMLRY ALSGRRRGLALLLVHDDPREFAYGHDGLVEALSAEGVVAVSMRQSFRQVETTDR" misc_feature 641128..>641574 /locus_tag="Deba_0561" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature 641131..641733 /locus_tag="Deba_0561" /note="haloacid dehalogenase-like hydrolase; Region: Hydrolase; pfam00702" /db_xref="CDD:189678" misc_feature 641398..641733 /locus_tag="Deba_0561" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene complement(641921..642520) /locus_tag="Deba_0562" /db_xref="GeneID:9493010" CDS complement(641921..642520) /locus_tag="Deba_0562" /note="InterPro IPR004360; KEGG: dma:DMR_03790 hypothetical protein; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C4XHA2 Putative uncharacterized protein; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily" /codon_start=1 /transl_table=11 /product="glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_003806528.1" /db_xref="GI:302341999" /db_xref="GeneID:9493010" /translation="MGRYNGVNHLAMATADIDKTIFFWRDLLEMPLVVGIADPGFQIY FFEISPTDMIGFFHWPQVRPLPEKDHGLPVEGPFAFDHLAIGLNERDDLWLLKDRLEA AGFWVSEVMDLGFIESVYSFDPNGVAIEFCWPKPGVDPRRAPTLVGRAPAAAALEGPL PQPGRWPAPPAPTPPQQRRSYPGEGRDLADQSKNLWRGK" misc_feature complement(642125..642505) /locus_tag="Deba_0562" /note="This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632" /db_xref="CDD:196803" misc_feature complement(order(642131..642133,642137..642139, 642161..642163,642275..642277,642350..642352, 642356..642358,642395..642397,642482..642484, 642494..642496)) /locus_tag="Deba_0562" /note="active site" /db_xref="CDD:176657" misc_feature complement(order(642131..642133,642275..642277, 642494..642496)) /locus_tag="Deba_0562" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176657" gene 642873..643412 /locus_tag="Deba_0563" /db_xref="GeneID:9493011" CDS 642873..643412 /locus_tag="Deba_0563" /note="KEGG: sfu:Sfum_1145 hypothetical protein; SPTR: A0LHD6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806529.1" /db_xref="GI:302342000" /db_xref="GeneID:9493011" /translation="MTLKELLAKKKKAIVAGWMDSVIETYPEETAQFLRKKSDRMLNP VGAAIETETERLFDLILEGIDPEKATKFLDNIIRIRAIQDFRPAQALAFVFALKHVVR QVLGSDLAKGGHADELWDLDKEIDRLALISFEIYMAVREQIYQLKAKEVHSNAFMLLR RSGLLVEQEGASADEGESD" gene 643437..644504 /locus_tag="Deba_0564" /db_xref="GeneID:9493012" CDS 643437..644504 /locus_tag="Deba_0564" /note="COGs: COG2181 Nitrate reductase subunit gamma; InterPro IPR003816; KEGG: drt:Dret_0235 nitrate reductase subunit gamma; PFAM: Nitrate reductase subunit gamma; SPTR: C8WZR2 Membrane-bound menaquinol oxidoreductase, cytochrome b subunit; PFAM: Nitrate reductase subunit gamma" /codon_start=1 /transl_table=11 /product="Nitrate reductase subunit gamma" /protein_id="YP_003806530.1" /db_xref="GI:302342001" /db_xref="GeneID:9493012" /translation="MNVIISLLAVIVLGVIAYVGVEGAGLRVLFGVIIPYAAVLTFFV GMVYRVIDWAKSPVPFRIPTTAGQEKSMPWIKPQPIENPSTRGGAIVRMILEVALFRS LFRNMKLDFRQGPKVRYSSEKFLWLFAILFHYSFLVTLLRHLRFFTDPIPAWVVGLES IDSMFKVEVMTPVIEIGLPALLLSGLVLGGMATLLLVRRLWIPQVRYISLPADYFPLW LIIGIAITGILMRYVIRVDVVGIKELTMGLATLSPALPDGVSGWFFVHLFLVSVLFAY FPFSKLTHMAGVFLSPTRNLVNNSRAVRHVNPWMTEPVKYHTYAAYEDDFRELMVEAG LPVDKELEPEDESADDKGEKE" misc_feature 643797..644300 /locus_tag="Deba_0564" /note="Nitrate reductase gamma subunit; Region: Nitrate_red_gam; cl00959" /db_xref="CDD:163938" gene 644507..646132 /locus_tag="Deba_0565" /db_xref="GeneID:9493013" CDS 644507..646132 /locus_tag="Deba_0565" /note="COGs: COG0247 Fe-S oxidoreductase; InterPro IPR009051:IPR012285:IPR017896:IPR017900; KEGG: mta:Moth_1606 4Fe-4S ferredoxin, iron-sulfur binding; SPTR: Q2RI27 4Fe-4S ferredoxin, iron-sulfur binding" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin, iron-sulfur binding protein" /protein_id="YP_003806531.1" /db_xref="GI:302342002" /db_xref="GeneID:9493013" /translation="MATKLSADVLGNIDHKPPKQGWMDTKPEFLPGTYLYPVNPESLK AIGAPGAREWNPTESDWKLPADWQGTIKAGIKDRLNRFRSFKLFMDICVRCGACADKC HFFIGTGDPKNMPVLRAELLRSVYRQDFTALGKVFKKMAGGRPLTEEVIKEWFYYFFQ CTECRRCSLFCPYGIDTAEITIIARELLNLIGCQIDWIGTPVANCNRTGNHLGLQPHT YKENVEYLLDDIEEYAGVRIEPSFNRKGAEILFVTPSGDVFAEPGIFTFMGYLMLFEH IGLDYTWSTYASEGGNFGFFTSHETMRKLNRKMYAEAERLGVKWILGGECGHMWRVVN QYMDTLNGPATFLEKPKSPITGTVFDNAASTKMVHITEFTADLIKNNKLKLDPSRNDH LKVTFHDSCNVARGMGMFEEPRYVLQNVCNNFYEMPPQTTREQTFCCGSGSGLNAGEY LEMRLRGGLPRANAVKAVHEEHGVNMLSCVCAIDRAVFPALMDFWVPGVAVAGVSELV ANALVMDGENEREYNLRGEEIPTAGDDDAGEEE" misc_feature 644753..646042 /locus_tag="Deba_0565" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" gene 646136..646558 /locus_tag="Deba_0566" /db_xref="GeneID:9493014" CDS 646136..646558 /locus_tag="Deba_0566" /note="InterPro IPR011031; KEGG: sfu:Sfum_1148 cycothcome C family protein; SPTR: A0LHD9 cycothcome C family protein" /codon_start=1 /transl_table=11 /product="cycothcome C family protein" /protein_id="YP_003806532.1" /db_xref="GI:302342003" /db_xref="GeneID:9493014" /translation="MLYDSKPIITGIVVFLVIFTYPLWSNVGSASQPPKPDAKPAVAM AAKLNLPATCVVDKEYMRTSHMVLLDQWREHVVRGEDRLFTTENADGQVVAQYKMSLT SNCMKCHSNKKEFCDSCHNYLAVTPYCWDCHLEPKEVK" gene 646558..647397 /locus_tag="Deba_0567" /db_xref="GeneID:9493015" CDS 646558..647397 /locus_tag="Deba_0567" /note="COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterProIPR001450:IPR006311:IPR017909:IPR017896:IPR 017900; KEGG: dal:Dalk_0608 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FJN5 4Fe-4S ferredoxin iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_003806533.1" /db_xref="GI:302342004" /db_xref="GeneID:9493015" /translation="MSWDRRKFLKAAGVGALAGMGWQLLRPGALDAAELIGKYSPNPS QLAVKPGGNWGMAIDLTKLDDAARQAAAEACNIEHNVPHYVDAEGKASKQDIKWIWEA EFDQAFVETENPYAPSAVLHNKVLVLCNHCQNPPCVRVCPTQATFKREDGIVMMDMHR CIGCRFCMAACPYGSRSFNFKDPRAAYFNEKDPKTGQPRLQEVTSEYPTRTKGVVEKC TFCAERLAVGLQPACVAAAPGVMFFGDMSDAGSPVRAQLNKRFSIRRKPNLGTEPQVF YLI" misc_feature <646936..647394 /locus_tag="Deba_0567" /note="Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]; Region: HybA; COG0437" /db_xref="CDD:30786" gene 647406..648563 /locus_tag="Deba_0568" /db_xref="GeneID:9493016" CDS 647406..648563 /locus_tag="Deba_0568" /note="COGs: COG5557 polysulphide reductase; InterPro IPR005614; KEGG: dol:Dole_0454 polysulphide reductase NrfD; PFAM: polysulphide reductase NrfD; SPTR: A8ZTK0 polysulphide reductase NrfD; PFAM: polysulphide reductase, NrfD" /codon_start=1 /transl_table=11 /product="polysulphide reductase NrfD" /protein_id="YP_003806534.1" /db_xref="GI:302342005" /db_xref="GeneID:9493016" /translation="MLDLALKGSKRYWGWLVLLLVIIGAGFGAYVVQAIEGLTITGMS RDVSWGFYIAQLTFLVGVAASAVMLVLPYYLHHYKTFGRITILGEFLAIGAVTMCLLF VIVDLGKPERLMNVILHPTPNSVLFWDMVVLNVYLFLNLIIGWCTLECERKDVPPPAW VKPLIYLSIPWAVSIHTVTAFLYAGLPGRGFWLTAIMAPRFLVSAFAAGPAVLILLSM LVRKISKFDPGKEAIQTLSKIVTYCIILHLFFFGLECFTVFYSNMPSHMSHIIYLYFG YHGFNTMVPFMWTALLCGLTAIGMLIVPKWRQNEKLLAIACVLVFICTYIDKGMGMMA GGFVPNPLHEITEYLPTGLELTISAGVYALGILIVTVLYKVALTIKEERGE" misc_feature 647460..648554 /locus_tag="Deba_0568" /note="Polysulphide reductase [Energy production and conversion]; Region: COG5557; cl01295" /db_xref="CDD:186416" misc_feature 647520..648371 /locus_tag="Deba_0568" /note="Polysulphide reductase, NrfD; Region: NrfD; pfam03916" /db_xref="CDD:112716" gene complement(648645..649079) /locus_tag="Deba_0569" /db_xref="GeneID:9493017" CDS complement(648645..649079) /locus_tag="Deba_0569" /note="COGs: COG1661 DNA-binding protein with PD1-like DNA-binding motif; InterPro IPR005175; KEGG: plt:Plut_1663 DNA-binding protein; PFAM: protein of unknown function DUF296; SPTR: Q3B2B4 DNA-binding proteins with PD1-like DNA-binding motif; PFAM: Domain of unknown function (DUF296)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806535.1" /db_xref="GI:302342006" /db_xref="GeneID:9493017" /translation="MTMLRMRVGPVYMGRLPHGCDLLAELTNICREHTIYHAQISAIG ALSQWRVGYYDQQAHEYEFLTGNDHREIVSLLGNASLYEGAPMVHAHLGLANAEGHVL GGHLAEGCKVFACEYIIQKFFTEIPLQRVPDPETGLNLWGKP" misc_feature complement(648723..649049) /locus_tag="Deba_0569" /note="Domain of unknown function (DUF296); Region: DUF296; cl00720" /db_xref="CDD:193917" gene complement(649172..649885) /locus_tag="Deba_0570" /db_xref="GeneID:9493018" CDS complement(649172..649885) /locus_tag="Deba_0570" /EC_number="5.4.2.4" /EC_number="5.4.2.1" /note="COGs: COG0588 phosphoglycerate mutase 1; InterPro IPR013078:IPR005952:IPR001345; KEGG: dde:Dde_3004 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; PRIAM: Bisphosphoglycerate mutase; SPTR: C0GUB8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase 1 family" /protein_id="YP_003806536.1" /db_xref="GI:302342007" /db_xref="GeneID:9493018" /translation="MPRLLLVRHGQSQWNLENRFTGWTDVDLSPLGEDEARQAGRLLQ TGGYSFDVAFTSVLKRAVRTLWLIMERMDLYWVEQHAHWRLNERHYGALQGLNKQETT QRHGAEQVRLWRRSFDAPPPSLDGLDPRHPRFDRRYRGVETALLPGGESLKDTLGRVL PYWTRAIEPRLRMGQDVVVAAHGNSLRALVKHLDHVSDADIVNLEIPTGNPLVYRLAA DLSVLDRAYLDQDRAQALP" misc_feature complement(<649625..649879) /locus_tag="Deba_0570" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature complement(order(649706..649708,649859..649864)) /locus_tag="Deba_0570" /note="catalytic core [active]" /db_xref="CDD:132718" misc_feature complement(649202..>649414) /locus_tag="Deba_0570" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" gene complement(649973..650926) /locus_tag="Deba_0571" /db_xref="GeneID:9493019" CDS complement(649973..650926) /locus_tag="Deba_0571" /note="COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: SORBIDRAFT_09g028950; hypothetical protein; PFAM: Bile acid:sodium symporter; SPTR: A6DUG7 Putative uncharacterized protein; PFAM: Sodium Bile acid symporter family" /codon_start=1 /transl_table=11 /product="Bile acid:sodium symporter" /protein_id="YP_003806537.1" /db_xref="GI:302342008" /db_xref="GeneID:9493019" /translation="MQAIINIVKDNLLVLAIIAGLILGWTAPGFGLLLKSWSAGPFLI ALIFFCQGMAFKVGDAPRGGALIRLLIWGFIVAQALSPLLGWAVARVAPLSDQEAVGF MLICAMAPTLVSGAVLADRAGGDWPSALILAVGINLVAVLTIPLILRLMLGASVSIDV LGLLGELIGLVLIPAIAGHLLGRPRPALTARLTPTLKLIPVFGIATLIYISTSANNEH LTSMEPLRLLLLAAASLIVHLTLMVAAYFGARGPFGLAEKPARALAVVCSEKTLPVAV AVWSLTMAQSHPLALLAPLVFHPSQIIVDGFIAGWWARRPA" misc_feature complement(649976..650806) /locus_tag="Deba_0571" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene complement(650933..652057) /locus_tag="Deba_0572" /db_xref="GeneID:9493020" CDS complement(650933..652057) /locus_tag="Deba_0572" /note="COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650:IPR001261; KEGG: mrd:Mrad2831_2432 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: B1LZ06 Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase" /codon_start=1 /transl_table=11 /product="peptidase M20" /protein_id="YP_003806538.1" /db_xref="GI:302342009" /db_xref="GeneID:9493020" /translation="MAAPIPTPLTIAQELVRRPSREEQGEQACADYLRGLLEAAGFAV RAIDLAPGRPNLIATLPQAKPGPALAFSGHLDTVALGQAPWSFEPCGGLVDGGRLLGR GASDMKAGVAAMVHAALRLAQGPAPRPNVALIFSAGEEHGLKGALHLAKTPGALPPVG AMLIGEPTANQPLLGHKGGLWLGVEFTGKSAHASMPHLGDNAIDKAAAAIVALGGHRF AQSHAVLGRPTLNVGLIRGGAAANIVADHCRLDLDTRLLPGMDPEAVIAELRRVMGPQ ARVVSRNYLPPTWTEPDHPWVAAALKLIAAQTGDRRPPGGAPYVTDASALGPALGCPT LIIGPGEPGQAHQTDEWCQCERIDQAAEIYHQLALAWPMD" misc_feature complement(651008..652033) /locus_tag="Deba_0572" /note="acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; Region: DapE-ArgE; TIGR01910" /db_xref="CDD:162596" misc_feature complement(650954..652027) /locus_tag="Deba_0572" /note="Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like; Region: M20_ArgE_DapE_like; cd08659" /db_xref="CDD:193570" misc_feature complement(order(651020..651022,651560..651562, 651638..651643,651740..651742,651836..651838)) /locus_tag="Deba_0572" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193570" misc_feature complement(order(651104..651106,651293..651295, 651299..651301,651323..651328,651344..651367, 651371..651373,651416..651418,651425..651430, 651434..651439,651446..651451,651455..651457, 651473..651484,651515..651517)) /locus_tag="Deba_0572" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:193570" gene complement(652143..652985) /locus_tag="Deba_0573" /db_xref="GeneID:9493021" CDS complement(652143..652985) /locus_tag="Deba_0573" /note="InterPro IPR000182:IPR016181; KEGG: bbt:BBta_5735 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: A5ENE3 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003806539.1" /db_xref="GI:302342010" /db_xref="GeneID:9493021" /translation="MDPEKIIIRNMTRSELDQTMQRAAQEGWNPGLGDAEVYWAQDPG GFWVAEQNGQVLASISAVIYDDAYAFMGFFITRPELRKQGLGLKLGLAAMARLGNRVI GQDGVVAMQDFYRRHGFELAFRGLRWQAQGGGAASGHSVDPRSLPIEELLAYDRQCFP APRPVFLQKWLSAPGAHARAVIAGDRLRGYGVVRPSHQGHRLGPLFAEGRAEAETLLQ DLLAAAGESPVFWDAPQNNPHAVAMAQSMGLTHVFETGRMYKNGLPPWRAENVYGLTC LELG" gene 653179..653988 /locus_tag="Deba_0574" /db_xref="GeneID:9493022" CDS 653179..653988 /locus_tag="Deba_0574" /note="KEGG: tnp:Tnap_1048 formate--tetrahydrofolate ligase; SPTR: B1FY89 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806540.1" /db_xref="GI:302342011" /db_xref="GeneID:9493022" /translation="MPESKPKFSLDKKRQIDDYLRGRLLFIGAMILLLIGLLRCVFDR PDGAIAIFAAAGGCLFFVYLDKFQEIEGLGVKARLRKTIDVADQKLEEVERKIEEAEE LFKNLRSVSVTMASMNFPVIALLGRWGSSLTRRQKQILANEMVKGLTSCGVPREEIDN AMHDFNFMILFDMSEPIRERMVEIVRERFGDEKAQLERKNFVKRLKKAKYQDWPTAVR EAMDGVPGLTQDDKAKLLSTYAENIKDIEFYAKHGEIRRPNVWFAGDEEHI" gene 654121..655257 /locus_tag="Deba_0575" /db_xref="GeneID:9493023" CDS 654121..655257 /locus_tag="Deba_0575" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR009100:IPR 009075:IPR013786:IPR013764:IPR006089; KEGG: dal:Dalk_2663 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FIW4 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003806541.1" /db_xref="GI:302342012" /db_xref="GeneID:9493023" /translation="MYFNEEHQALRRTVRKFIDTEINPYMDQWEQTTAPLHELFKKMG DLGLLGIRYEEKYGGMGLDYWFETVFLEELGHIAGMGVSTAICVQTHMATPAIAEFGS EYLKETYLRPAIAGEMVSAIAVTEPDAGSDVAAIKTRARRDGDHYLINGSKLYITNGV QADFLTLLARTSDEPGHHSFGLFVVPTNLPGFSVGKKLDKVGLRSSDTALLHFDDVPV PAQNLIGQEGEGFIMQMKQFQHERFCTLPSAVTMCEDMIKMTMEHLRQRVVFGKPLAT RQVLRHRMVDWLTEIEALRHLTYHIVRMKQAGQDATREVSMGKLMAGRLVRNVADGCV QMHGGMGFINETLIARCFRDSRVLSIGAGADEVMSEVIARLSGF" misc_feature 654121..655242 /locus_tag="Deba_0575" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 654133..655242 /locus_tag="Deba_0575" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(654394..654396,654484..654486,654490..654492, 654583..654585,654589..654591,655195..655203, 655207..655209,655213..655215) /locus_tag="Deba_0575" /note="active site" /db_xref="CDD:173838" gene complement(655314..655862) /locus_tag="Deba_0576" /db_xref="GeneID:9493024" CDS complement(655314..655862) /locus_tag="Deba_0576" /note="InterPro IPR018588:IPR009056; KEGG: dde:Dde_1896 lipoprotein; PFAM: Dihaem cycothcome C; SPTR: Q310F3 Lipoprotein, PFAM: Dihaem cycothcome C" /codon_start=1 /transl_table=11 /product="Diheme cycothcome C" /protein_id="YP_003806542.1" /db_xref="GI:302342013" /db_xref="GeneID:9493024" /translation="MSPRKLHALTLAIALVFGLAAVAWADHHGHGRKERRDRYEQEAV PPVNNALYKQTCGGCHMAYQPGLLPSGSWREIIAGLGDHFGQDISPDDADKATILAYL EANSAERSPSKRSRKIMDCLGGATPPRISEVPYIVRQHEEIRPGDYKDAQGQPLTPAN CAACHTTAEQGVYDDDNVRLPR" misc_feature complement(655344..655709) /locus_tag="Deba_0576" /note="Dihaem cytochrome c; Region: DHC; pfam09626" /db_xref="CDD:150329" gene complement(655866..657149) /locus_tag="Deba_0577" /db_xref="GeneID:9493025" CDS complement(655866..657149) /locus_tag="Deba_0577" /EC_number="5.4.3.8" /note="COGs: COG0001 glutamate-1-semialdehyde aminotransferase; InterPro IPR005814:IPR015424:IPR015421:IPR004639; KEGG: pca:Pcar_0266 glutamate-1-semialdehyde aminotransferase; PFAM: aminotransferase class-III; SPTR: Q3A7W5 glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase" /codon_start=1 /transl_table=11 /product="glutamate-1-semialdehyde-2,1-aminomutase" /protein_id="YP_003806543.1" /db_xref="GI:302342014" /db_xref="GeneID:9493025" /translation="MPTNRSQALWERAQRVIPGGVNSPVRAMKSVGLNPPFIRRAQGC YIKDADGNRYIDYVGSWGPMILGHAQPDVIEAIKAAAEKGTSYGAPTEAEVILAEELC RWVPSLEMVRLVSSGTEATMSALRLARGFTGRELIVKFDGCYHGHGDGLLVSAGSGLA TLGLPACPGVPAAVAGLTLSLPYNDLAAAEALFAARGAEIAAVIVEPVAGNMGVVLPV EGFLAGLRRLCDAHGALLIFDEVITGFRVGPGGAQELFGVMPDLTTLGKIIGGGLPMG AYGGKAQIMAHIAPEGPVYQAGTLSGNPLATAAGLATLEFLAGKAVYPRLEELGAMLY NGLEGLFAAKGLACFGQRVGSMMCFFFQPGPVTNYEQAKQSDTELFSRYYRLMLARGI YFAPSQFEATFVSLAHDAAAIDQTLSAVADALKEL" misc_feature complement(655869..657143) /locus_tag="Deba_0577" /note="glutamate-1-semialdehyde aminotransferase; Provisional; Region: PRK00062" /db_xref="CDD:178834" misc_feature complement(655878..657125) /locus_tag="Deba_0577" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature complement(order(656349..656351,656424..656429, 656433..656435,656532..656534,656709..656711, 656715..656720,656796..656804)) /locus_tag="Deba_0577" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature complement(order(656349..656351,656424..656426, 656433..656435,656532..656534,656715..656720, 656796..656801)) /locus_tag="Deba_0577" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(656349..656351) /locus_tag="Deba_0577" /note="catalytic residue [active]" /db_xref="CDD:99735" gene complement(657139..657633) /locus_tag="Deba_0578" /db_xref="GeneID:9493026" CDS complement(657139..657633) /locus_tag="Deba_0578" /note="COGs: COG1522 Transcriptional regulators; InterPro IPR011991; KEGG: dal:Dalk_4278 transcriptional regulator, AsnC family; SPTR: B8FMC0 Putative transcriptional regulator, AsnC family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AsnC family" /protein_id="YP_003806544.1" /db_xref="GI:302342015" /db_xref="GeneID:9493026" /translation="MSLDDIDKKLIARLQGDLPLEPRPFAAMAAELGLDEAEVVRRVR RLADAKIMRRFGATLRHQRSGFACNVMVAWRAPADQASEMGRVLATVRNVSHAYHRRP CPGFDYNLFTMVHGRDEQECRSIIDQMAQMVGHPAHDLLFSVEELKKTSMRYFTEEGE IHAH" misc_feature complement(657181..657633) /locus_tag="Deba_0578" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(657337..657627) /locus_tag="Deba_0578" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 657818..658600 /locus_tag="Deba_0579" /db_xref="GeneID:9493027" CDS 657818..658600 /locus_tag="Deba_0579" /note="COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376; KEGG: sss:SSUSC84_0029 phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; SPTR: A6PR94 Putative uncharacterized protein; PFAM: formyl transferase" /codon_start=1 /transl_table=11 /product="formyl transferase domain protein" /protein_id="YP_003806545.1" /db_xref="GI:302342016" /db_xref="GeneID:9493027" /translation="MITASPIFRPQGRPMRVAAFMSGSGSNIRRLLEQKSPHYEVCFI FSDRADGQCQGQNIALEYGLPYFAHDIRRFYALRGQSRTVATARGLALRRQFDAVAAR LLAAFAIDVIALGGYMSFLTLDGAVNVHPADLSIVGPEGRRRFVGDDAVFEAIAAGQS ELRASTLWTDAGVDSGPLLMVSEPLAVELPAPLARLKARPELLRAVADQHQERLKAVG DWVVFPRTIELIAQGRLGLGPGGVATLDGRLMPQGVRLADIA" misc_feature 657857..658555 /locus_tag="Deba_0579" /note="phosphoribosylglycinamide formyltransferase; Reviewed; Region: purN; PRK05647" /db_xref="CDD:180182" misc_feature 657863..658357 /locus_tag="Deba_0579" /note="Formyltransferase, catalytic core domain; Region: FMT_core; cl00395" /db_xref="CDD:187897" misc_feature order(657878..657880,657893..657901,658157..658180, 658199..658210,658256..658258,658316..658318, 658322..658327,658334..658339) /locus_tag="Deba_0579" /note="active site" /db_xref="CDD:187712" misc_feature order(657893..657898,658160..658165,658202..658204, 658208..658210) /locus_tag="Deba_0579" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187712" misc_feature order(658157..658159,658166..658168,658172..658180, 658199..658201,658322..658327,658334..658339) /locus_tag="Deba_0579" /note="cosubstrate binding site; other site" /db_xref="CDD:187712" misc_feature order(658199..658201,658205..658207,658337..658339) /locus_tag="Deba_0579" /note="catalytic site [active]" /db_xref="CDD:187712" gene 658597..659112 /locus_tag="Deba_0580" /db_xref="GeneID:9493028" CDS 658597..659112 /locus_tag="Deba_0580" /note="COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125:IPR016193:IPR016192; KEGG: bpt:Bpet2566 zinc-binding hydrolase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Q1NJM2 Cytidine/deoxycytidylate deaminase, zinc-binding region; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region" /codon_start=1 /transl_table=11 /product="CMP/dCMP deaminase zinc-binding protein" /protein_id="YP_003806546.1" /db_xref="GI:302342017" /db_xref="GeneID:9493028" /translation="MSAPTPAQLAQADRRHMALCLRLARRAARLGETPIGAVLVDAAG RVLAAHGNRAISHTDPTAHAEMLVLRQAAAAMGNYRLVGSTLYVSLEPCPMCAGAIVW ARVRRVVYGAADPKAGALGSALDLSRQPGLNHRPIVEGGLLAEESAALLREFFQSRRG KAKASPLHGET" misc_feature 658687..658962 /locus_tag="Deba_0580" /note="Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285" /db_xref="CDD:29828" misc_feature order(658699..658701,658750..658752,658783..658791, 658873..658875,658882..658884) /locus_tag="Deba_0580" /note="nucleoside/Zn binding site; other site" /db_xref="CDD:29828" misc_feature order(658777..658779,658792..658794,658804..658806, 658876..658881,658888..658893,658900..658905) /locus_tag="Deba_0580" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29828" misc_feature order(658783..658791,658870..658875,658882..658884) /locus_tag="Deba_0580" /note="catalytic motif [active]" /db_xref="CDD:29828" gene complement(659270..660934) /locus_tag="Deba_0581" /db_xref="GeneID:9493029" CDS complement(659270..660934) /locus_tag="Deba_0581" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR018486:IPR020845; KEGG: dal:Dalk_0694 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FJX1 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806547.1" /db_xref="GI:302342018" /db_xref="GeneID:9493029" /translation="MEEKFWHRNYDPGVPHHINFPDIAAQDILSIAVYSNPQKVATTF FGTEIKYYELRRLVMRLANALKKLGVKKGDRIGLHLPNSPQYIIAYYAVLHNGAIVVN LNPMYTPDELKALCTNTGVSTLISFDMVVPYIKEVCKTCDIERVIITKVTDFINGMPQ STPAEMGLEPNWLHFSQVLESCQELRPLGVPIDKSDPALIQFTGGTTGIPKGAVLSHG NLVAASFMIAAWVEPTFRMIPPSQRYTLSILPFFHVYGDIVALNASVLTCATQIVVPR FDVNEILGIIGLMDLPMFWPAVPTMINAVLSHPQAASLELDRRFTCLNSGGAPIAVNL IQRGIDLGINMSEGWGMSETTSIGISNPSMGKKKPGSIGIPFPNTDVMLLDPNDGKTP VGVGEKGELVVRGPQVMQGYWNNPSETAGQLKDGWLYTGDVAVQDEEGYIFIVDRTKD MIIAGGYNIYPREIDEVLFEHPKVADAVSVGIPDDYRGETVKAYIVVKPGETLTEQEI LDFCKEKLAPYKRPKMVEFRAELPKSAVGKLLRKVLRAEEEAKRKG" misc_feature complement(659294..660826) /locus_tag="Deba_0581" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07656" /db_xref="CDD:181068" misc_feature complement(659300..660784) /locus_tag="Deba_0581" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(661397..661858) /locus_tag="Deba_0582" /db_xref="GeneID:9493030" CDS complement(661397..661858) /locus_tag="Deba_0582" /note="InterPro IPR003251:IPR009078:IPR012347; KEGG: dal:Dalk_3005 rubrerythrin; PFAM: Rubrerythrin; SPTR: B8FL60 Rubrerythrin; PFAM: Rubrerythrin" /codon_start=1 /transl_table=11 /product="Rubrerythrin" /protein_id="YP_003806548.1" /db_xref="GI:302342019" /db_xref="GeneID:9493030" /translation="MTNFASVDQILDFAIEKEDQAVRFYTGLAAGMEKPWMRELFRDF ADQELRHKTKLEEVRAGGQLRAAADKVADLRLADYLADVDVVDGGKMTYAEALNVAMK REKAAFKLYADLAAATDDQRLKDAFLSLAHEEAKHKLYLEVQYDETILTEN" misc_feature complement(661424..661834) /locus_tag="Deba_0582" /note="Uncharacterized family of ferritin-like proteins found in archaea and bacteria; Region: Ferritin_like_AB; cd01045" /db_xref="CDD:153104" misc_feature complement(order(661448..661450,661457..661459, 661547..661549,661706..661708,661715..661717, 661805..661807)) /locus_tag="Deba_0582" /note="diiron binding motif [ion binding]; other site" /db_xref="CDD:153104" gene complement(661951..663243) /locus_tag="Deba_0583" /db_xref="GeneID:9493031" CDS complement(661951..663243) /locus_tag="Deba_0583" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004010; KEGG: pca:Pcar_0052 methyl-accepting chemotaxis protein (MCP); PFAM: chemotaxis sensory transducer; Cache domain protein; SMART: chemotaxis sensory transducer; SPTR: C1SLV7 methyl-accepting chemotaxis protein; PFAM: EAL-domain associated signalling protein domain; methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_003806549.1" /db_xref="GI:302342020" /db_xref="GeneID:9493031" /translation="MPALFDNSLRRQALEAMRRVAENRWDLAEAAPPPRRGPLRLAAR LFNAMQARLRATVQSLAAESVALSQGAPQLARLASELEQAARHQANRSRDIAAAGRAM AQSVRQIAASTEQAVACSAQVAHTTSQMQQHSRSIGQTMGMIRKVASQTRLLAINAAV EAARAGEHGAGFAVVAAEVQALADQTMSAALKVEELLSAIGVGVDQLAQAVGDGAEFG PGQGASAGLHGLLSAIAKAGQDQDAEVNAISRDIEQVAAAAQQQAEAVASVNQLGQMA RERADGLLTTLGQFRLEAHHQAARMVEAIAANPDIASMDRRRQEAAMRASIGRGEVFE LLYITDARGRQVTDNIAPSGFSAAYGSSGHGRDWSSRPWFKGVAESGRAYVSDIYRSA ATDDFCFTVAAPLRGPDGRMIGVLGADVQFAKMLSDAR" misc_feature complement(662368..>663108) /locus_tag="Deba_0583" /note="Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840" /db_xref="CDD:31182" misc_feature complement(<662644..662940) /locus_tag="Deba_0583" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" misc_feature complement(662029..>662238) /locus_tag="Deba_0583" /note="EAL-domain associated signalling protein domain; Region: YkuI_C; pfam10388" /db_xref="CDD:118909" misc_feature complement(<661984..662091) /locus_tag="Deba_0583" /note="Cache domain; Region: Cache_1; pfam02743" /db_xref="CDD:145738" gene 663672..664601 /locus_tag="Deba_0584" /db_xref="GeneID:9493032" CDS 663672..664601 /locus_tag="Deba_0584" /note="COGs: COG0421 Spermidine synthase; InterPro IPR001045; KEGG: mar:MAE_08080 spermine synthase; PFAM: spermine synthase; SPTR: B0JQH1 spermine synthase; PFAM: spermine/spermidine synthase; TIGRFAM: spermidine synthase" /codon_start=1 /transl_table=11 /product="spermine synthase" /protein_id="YP_003806550.1" /db_xref="GI:302342021" /db_xref="GeneID:9493032" /translation="MSGAETSIWVTEVITDWDVYHHGVSEVIAHEKTKYQEMYVVHSP SFGRALVLDGKWQSSQADEFLYHEPLVQPAMIAHGAPKKVLILGGGEGATIRETLRWK SVERVVMVDIDQPVVEACREHMEVMHQGAWDDPRLELVFDDAWKYLEDTREAWDVIIS DLTDPLEEGPSFKLFTREFYEMARQTLAPGGKMVIQAGPVSPVELAPHARMVKTLAAV FTHTRSYCSHTPSYGRPWGFVLCSQEPLDTRPEPQAVDELLGRMLQSELKLIDGQTLL GMLQTPKHIRQAVERTDVIYTLAAPPRFGQEGR" misc_feature 663672..664583 /locus_tag="Deba_0584" /note="spermine synthase; Region: PLN02823" /db_xref="CDD:178418" misc_feature 663918..664259 /locus_tag="Deba_0584" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(663930..663950,664002..664007,664095..664103, 664152..664154) /locus_tag="Deba_0584" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(664598..666316) /locus_tag="Deba_0585" /db_xref="GeneID:9493033" CDS complement(664598..666316) /locus_tag="Deba_0585" /note="COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; KEGG: dol:Dole_1973 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZT94 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806551.1" /db_xref="GI:302342022" /db_xref="GeneID:9493033" /translation="MVSKIKAGDVTSNLYDYQKARESFSWDQAEALFTWAGGRRMNIA HEAVDRWTVCARDARRRALVWDDSIMVRTYSFEDARAISCRWANLLAQVGLGLGGRVL TLLPPGPDVIWVQLAAARLGAAYCHLRPGLSTAVYGSLIQRLRPDVVVTTAGVGDFPW ELAPEGCAMVYLRGLAPGRLAREHAALELLPQMSDHLEPAWVERDHMLQIVHAENPEG PPRLVWGAVESMVGYLISARWALNLRPDSLLLVDGHTSGTVFSVYGVWGAWLCGAASL LLTGPFSAERWRGALRHHKVSVWYTMPPFLRRLRAAGDRPGEVGQFAALEHLATVGNR LEMEDFFWTRNNFGRPPHQNWWTVETGMIAVANFPSMDLKLGSSGRPMPGLDVKVLDG EGRPAHLLTIGDLSLQAPWPAMARGFIDDDEAYLRRFRAGRWLQTGDMAAYDEDGYIY LQGRQDDLIRGVGRMVGPFEVEQALTADPRVAEAVAVASALPDGQPALKAFVVAAPGQ EPDDELRASLLEMLALAISPDGPVAGLEFLPRLPRNAQGRLIRRALRALDLGLPLGDV SNLKSR" misc_feature complement(664688..666316) /locus_tag="Deba_0585" /note="acetyl-CoA synthetase; Provisional; Region: PRK04319" /db_xref="CDD:179821" misc_feature complement(664790..>665182) /locus_tag="Deba_0585" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(666332..667366) /locus_tag="Deba_0586" /db_xref="GeneID:9493034" CDS complement(666332..667366) /locus_tag="Deba_0586" /note="COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: dol:Dole_1974 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; SPTR: A8ZT95 histone deacetylase superfamily; PFAM: histone deacetylase domain" /codon_start=1 /transl_table=11 /product="histone deacetylase superfamily" /protein_id="YP_003806552.1" /db_xref="GI:302342023" /db_xref="GeneID:9493034" /translation="MLQVQIVRDDRYLRHKTGLSHPESPARLSAVYRMLDWDHPGGFI EKQARPITLEDLERVHTPAYVRIILATARQRLTHLAPDTIASRDSCLAAWLAAGGCVL GVDDLLAGRCQACLVLCRPPGHHALADRAGGFCIFNNLGLAARHALRRGLRRVLIVDW DIHHGNALQNLFYADDRVVYLSTHLPNAYPFTGKLGEVGVGPGAGHTINLPLPPKWGD NDAMTLYRVVLEQLVERFSPEMIMVACGFDAHFRDPIGATLQTEASYAGLAQLVATLG PRNNDIPLLLALEGGYDPDTLTACVAEVLAALQDQRHGQAVWSAQSQKADELLARAGR VHAGFGLWLD" misc_feature complement(666431..667366) /locus_tag="Deba_0586" /note="Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]; Region: AcuC; COG0123" /db_xref="CDD:30472" misc_feature complement(666440..667309) /locus_tag="Deba_0586" /note="Histone deacetylase domain; Region: Hist_deacetyl; cl02986" /db_xref="CDD:194501" gene 667543..669354 /locus_tag="Deba_0587" /db_xref="GeneID:9493035" CDS 667543..669354 /locus_tag="Deba_0587" /note="COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807:IPR000644:IPR014743; KEGG: sfu:Sfum_2352 Cl-channel, voltage-gated family protein; PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein; SPTR: A0LKT1 Cl-channel, voltage-gated family protein; PFAM: CBS domain; Voltage gated chloride channel" /codon_start=1 /transl_table=11 /product="Cl- channel voltage-gated family protein" /protein_id="YP_003806553.1" /db_xref="GI:302342024" /db_xref="GeneID:9493035" /translation="MNPTAPEQKHPPTRPVNRLVGLLRRQTVRRILVSVLIGVVAGLG AMAFFLCLEWACWFVLGYLAGAQIPGPDGERVVHMAVTTPYRPWLLALLPVLGGLASG LLVNALAPEAEGEGTDAMIDAFHNKGGTIRGRVPFIKSAASIITLASGGSVGREGPIA QIGAGFGSWLAQALKIPAHERRIYMLAGCAAGLGSIFRAPLGSAITSIEVLYSEDFES EAIIPCVIASVIAYCMFTFFFGFAPVFGSPHFVFHDPRELLAYAVLGLICAPIGMGYV SMFNRSREFFRGLTNVPRQYRPMLGGVGVGLVALAVPEAIGGGYGYMQLAIYGQLGLG LMCLAAGFKMVTTSLTIGSGSSGGVFGPTLFIGGMIGGVVGQVGHMLFPEIVQQPGAY VLVGMAAFFASAAKAPVGSLIMVSEMAASYQLLPPLMIVSMIAILFNRGSSIYTKQLL NKFQSPAHEADLTVNVLETLTVADVFAADRPVIGLRPDENFAQLRRHIADSHQSLFPV LDQAGALIGVLPVAAIRKVLFEDSLAHLVVVGELAEPPTALALGDDLYSALLKFLDSG HGQLPVTADGRLLGLLDHADVIAAYHQEVSRRRRAAA" misc_feature 667654..668847 /locus_tag="Deba_0587" /note="CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This...; Region: Voltage_gated_ClC; cd00400" /db_xref="CDD:79359" misc_feature 667870..668862 /locus_tag="Deba_0587" /note="Voltage gated chloride channel; Region: Voltage_CLC; pfam00654" /db_xref="CDD:189656" misc_feature order(667897..667911,668002..668016,668614..668628) /locus_tag="Deba_0587" /note="Cl- selectivity filter; other site" /db_xref="CDD:79359" misc_feature order(667900..667902,667906..667908,668008..668013, 668614..668622) /locus_tag="Deba_0587" /note="Cl- binding residues [ion binding]; other site" /db_xref="CDD:79359" misc_feature 668008..668010 /locus_tag="Deba_0587" /note="pore gating glutamate residue; other site" /db_xref="CDD:79359" misc_feature order(668143..668145,668170..668172,668218..668220, 668239..668241,668758..668760,668767..668769, 668791..668793,668815..668817,668836..668841) /locus_tag="Deba_0587" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:79359" misc_feature 668980..669312 /locus_tag="Deba_0587" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC...; Region: CBS_pair_SpoIVFB_EriC_assoc2; cd04613" /db_xref="CDD:73113" misc_feature 668980..669306 /locus_tag="Deba_0587" /note="FOG: CBS domain [General function prediction only]; Region: COG0517" /db_xref="CDD:30863" gene complement(669351..670667) /locus_tag="Deba_0588" /db_xref="GeneID:9493036" CDS complement(669351..670667) /locus_tag="Deba_0588" /note="InterPro IPR001440:IPR019734:IPR011990:IPR013026; KEGG: rca:Rcas_0215 hypothetical protein; PFAM: hypothetical protein; SPTR: A7NFW7 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806554.1" /db_xref="GI:302342025" /db_xref="GeneID:9493036" /translation="MLWLWTILTGSKFKALAHEGQRLLRTGRANEAMDAFRAMVKGWP QQPEGYLGMAAVYQAMSLRLEAAREKAIGQGLTHLATHPEDLRARLEVAEALMDKEMF DWAAHHADLALRLAPEDQKVLRLAARAHRRNNNHRKAVVALRRALRQDPLDPELYDLL TASLRASGNHAEAARIGSLGEALQALKDNPTDPGCLVNAVRQFLTAGYLRLAVELVES CVAQGADHPRIHLLRASLMLEDRKPKEALAALHKAMALDPLNLDVHRLLTDVHEILSE GKQADYHRRLVRVLGSLGDATTMAANMVVQIRVLVELGNFPAAHQLCQNLARDFPKDW RAFYAHGLLAREEGDLAAAERHLMAAKERNDTSPEVHMEIARLRTALGEKIEAVGEAR VAVKLAPRDGEIRRAMAQVLRQNGFMDQAIEEEDIAEALEKSQGKR" misc_feature complement(669894..>670118) /locus_tag="Deba_0588" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(669909..669911,669918..669920, 669930..669932,669966..669968,670011..670013, 670020..670022,670032..670034,670068..670070, 670113..670115)) /locus_tag="Deba_0588" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(order(669948..669953,669960..669965, 669972..669977,670053..670058,670065..670070, 670074..670079)) /locus_tag="Deba_0588" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(669471..669752) /locus_tag="Deba_0588" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(669486..669488,669495..669497, 669507..669509,669543..669545,669588..669590, 669597..669599,669609..669611,669645..669647, 669690..669692,669699..669701,669711..669713, 669747..669749)) /locus_tag="Deba_0588" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(order(669525..669530,669537..669542, 669549..669554,669630..669635,669642..669647, 669651..669656,669741..669746)) /locus_tag="Deba_0588" /note="binding surface" /db_xref="CDD:29151" gene complement(670732..671367) /locus_tag="Deba_0589" /db_xref="GeneID:9493037" CDS complement(670732..671367) /locus_tag="Deba_0589" /note="InterPro IPR005586; KEGG: dol:Dole_1014 ABC-type transport system auxiliary component-like protein; PFAM: protein of unknown function DUF330; SPTR: A8ZWW8 ABC-type transport system auxiliary component-like protein; PFAM: Protein of unknown function (DUF330)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806555.1" /db_xref="GI:302342026" /db_xref="GeneID:9493037" /translation="MFQTKRLIAAAALLALALGAPGCLSKPMITEHQYMFEYAAPRPP AWPPLKAGLAINDPTAAAGYIDTAMIFRSGPYQRQSYNYNRWRVTPAEMVGDFLLRDF QASGLFEAVFDSQDDANARFFLDIGVEDLLADRAGGGQLEIALLATLTDIEHSRLPLR VVFQKRYAVAQPMAGDSPKEMARAASQAMEALSRRLIGDCYQAMAKRLTQP" misc_feature complement(670780..671253) /locus_tag="Deba_0589" /note="Protein of unknown function (DUF330); Region: DUF330; cl01135" /db_xref="CDD:194047" gene complement(671390..672307) /locus_tag="Deba_0590" /db_xref="GeneID:9493038" CDS complement(671390..672307) /locus_tag="Deba_0590" /note="COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: dol:Dole_1015 hypothetical protein; PFAM: Mammalian cell entry related domain protein; SPTR: A8ZWW9 Mammalian cell entry related domain protein; PFAM: mce related protein" /codon_start=1 /transl_table=11 /product="Mammalian cell entry related domain protein" /protein_id="YP_003806556.1" /db_xref="GI:302342027" /db_xref="GeneID:9493038" /translation="MSSKSSNVRLGLFVLSGITLAVVILVWMGAAKYMKGATTYVTFF DESVQGLQIDSRVKYRGVEVGRVTDVRVAPDFRLIEVVMEIGFDGDLSHDMVAQLQTI GITGIMFVELDRQRPGDKAESPVINFAAEHPIIPSKPSEMHRLLGVIDRITNQISRID FEALGNDINQTIKGVRDLVQDGALKKTVDNMQATAANLESITALVLSEVKGGELRKAV KSFNTGAQSFDALMGEARQALKDLRLKETAGQVRELAAVLKDQTVAIAQLTRRTMVNL RSSSGRLDNLLRRLEMNPSYLIFSEPPEQ" misc_feature complement(<671435..672307) /locus_tag="Deba_0590" /note="ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463" /db_xref="CDD:31652" misc_feature complement(<672041..>672280) /locus_tag="Deba_0590" /note="mce related protein; Region: MCE; cl03606" /db_xref="CDD:186584" gene complement(672304..673110) /locus_tag="Deba_0591" /db_xref="GeneID:9493039" CDS complement(672304..673110) /locus_tag="Deba_0591" /note="COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: pca:Pcar_2750 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B9ZQV3 ABC transporter; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806557.1" /db_xref="GI:302342028" /db_xref="GeneID:9493039" /translation="MNSLAAITPPEPGEPIIKVRGLSVRFGELEVLRDVSFDVMRGEI LVIVGGSGCGKTTLLRHIIGLHQPNAGRVEFSGVDVHNASSRQTRALRRSFGMLFQSG ALLGSMNLAENICLPLEDHTSLSDREMLQVAQMKLSLVGLAGFQNHLPAEISGGMKKR AGLARAMALDPLALFFDEPSAGLDPITSAELDALILDLNKALGTTMIIVSHELASIFA IAHRVIMLDKSKKGLIAQGDPRWLRDNSPDPLVRNFFGRNPGGVEGARTK" misc_feature complement(672328..673086) /locus_tag="Deba_0591" /note="ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127" /db_xref="CDD:31324" misc_feature complement(672349..673062) /locus_tag="Deba_0591" /note="ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex...; Region: ABC_Org_Solvent_Resistant; cd03261" /db_xref="CDD:73020" misc_feature complement(672943..672966) /locus_tag="Deba_0591" /note="Walker A/P-loop; other site" /db_xref="CDD:73020" misc_feature complement(order(672478..672480,672577..672582, 672811..672813,672940..672948,672952..672957)) /locus_tag="Deba_0591" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73020" misc_feature complement(672811..672822) /locus_tag="Deba_0591" /note="Q-loop/lid; other site" /db_xref="CDD:73020" misc_feature complement(672625..672654) /locus_tag="Deba_0591" /note="ABC transporter signature motif; other site" /db_xref="CDD:73020" misc_feature complement(672577..672594) /locus_tag="Deba_0591" /note="Walker B; other site" /db_xref="CDD:73020" misc_feature complement(672559..672570) /locus_tag="Deba_0591" /note="D-loop; other site" /db_xref="CDD:73020" misc_feature complement(672472..672492) /locus_tag="Deba_0591" /note="H-loop/switch region; other site" /db_xref="CDD:73020" gene complement(673127..674269) /locus_tag="Deba_0592" /db_xref="GeneID:9493040" CDS complement(673127..674269) /locus_tag="Deba_0592" /note="COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR002645:IPR003453; KEGG: dba:Dbac_0468 protein of unknown function DUF140; PFAM: protein of unknown function DUF140; Sulfate transporter/antisigma-factor antagonist STAS; SPTR: C7LVW4 Putative uncharacterized protein; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806558.1" /db_xref="GI:302342029" /db_xref="GeneID:9493040" /translation="MIRAHHDSVLSLEAHGHAGGDLHVSLRGRLGVNQLPEFQTAIAR VLKELAPRSVLLDLSRLDYLDTSGAMAVKIWAAAPPQDLAVRLEAGQSRFRDMLALID VDQVRKPAINPDKRDAGMLEGMGQSARRMGEQIGQLLAFVGQATKSVLMVVARPATLR MGDVLAYMQQVGVDGLPIVSLIGLLLGMIMAFMSSLQLKSFGADVYVATLVAVAMVRE LGPIMTAILVAGRSGSSFAAEIGTMKVNEEVDALTVMGYDPVIFLALPKVIAAVLMVP LLTLFSIAAAIMGGLIVGVAGLDLTPYTYLNESISSFDAGDLMTSMFKAAVFGLLIAV IGCQKGFTVEGGAAGVGKATTSAVVAALFLIIVTDSVFAIIQYYFL" misc_feature complement(673952..674215) /locus_tag="Deba_0592" /note="Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043" /db_xref="CDD:132914" misc_feature complement(order(673961..673963,673967..673972, 673982..673984,674048..674053,674057..674065, 674069..674077,674081..674083,674153..674155, 674171..674179,674183..674185)) /locus_tag="Deba_0592" /note="anti sigma factor interaction site; other site" /db_xref="CDD:132914" misc_feature complement(674072..674074) /locus_tag="Deba_0592" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:132914" misc_feature complement(673145..673786) /locus_tag="Deba_0592" /note="Domain of unknown function DUF140; Region: DUF140; cl00510" /db_xref="CDD:186046" gene complement(674317..674892) /locus_tag="Deba_0593" /db_xref="GeneID:9493041" CDS complement(674317..674892) /locus_tag="Deba_0593" /note="KEGG: asa:ASA_4345 sensory histidine kinase CreC; SPTR: Q0UKW3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806559.1" /db_xref="GI:302342030" /db_xref="GeneID:9493041" /translation="MHHYAQSYRAFLAAWALALLVLLAVGCERNRGSEAAQGFVSGNK ELIDNLSTDLAQALAAADDAKANKIVDDFFAQAQADKRPLNVGILVLGAKGQVISSRY PDPKDKTAVIKSEDDFNYSQYKKIDKVLSKGKTTSTILYTVKHKVYMVCSPLKHGNAI VGALCVARVPSVMGPPLEIPDAEFLELSFND" gene complement(674943..676181) /locus_tag="Deba_0594" /db_xref="GeneID:9493042" CDS complement(674943..676181) /locus_tag="Deba_0594" /note="COGs: COG1409 phosphohydrolase; InterPro IPR004843; KEGG: sml:Smlt2170 calcineurin phosphoesterase; PFAM: metallophosphoesterase; SPTR: B2FPM6 Putative calcineurin phosphoesterase; PFAM: Calcineurin-like phosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_003806560.1" /db_xref="GI:302342031" /db_xref="GeneID:9493042" /translation="MTLRRLGPKLAIVLLLIALGAAQAWAGKAIVVGGLCLDEQSRPV AGVIVSDERAVTRSDAEGAFSLGTEDDRLICLSAPDGQAIEGPWWLPASQVQGPLTVR LRSAALAGPLRLAIVSDPHLFDPSCKPDFVGLTDAMAQKPMEFWAKAVNLVAQSKPDL TVALGDMCFDADKQGPAHAQAQMALAAKAAAMLPQPWRSVPGNHDVRYDDGAVHLQYY RAQLGPARHVYLAGGVALIMFDNIALGQRPDGKAKNCGGTSPEALAWLEELLEVLPAD KPLVLLAHFPMASAIVGSNPLHKSSLLRIDEKPGMALRDADQNRDKALALLQGRRLAG WFNGHEHIGHVGVLYSRQGAISLATAPAICGRWWAGDMEWGPLSFAPGWLEVSVAVTA DGVTITPVMHAFTPALDLHP" misc_feature complement(<675321..675839) /locus_tag="Deba_0594" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" misc_feature complement(order(675330..675332,675570..675575, 675684..675686,675819..675821,675825..675827)) /locus_tag="Deba_0594" /note="active site" /db_xref="CDD:163614" misc_feature complement(order(675330..675332,675573..675575, 675684..675686,675819..675821,675825..675827)) /locus_tag="Deba_0594" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163614" gene complement(676188..677558) /locus_tag="Deba_0595" /db_xref="GeneID:9493043" CDS complement(676188..677558) /locus_tag="Deba_0595" /EC_number="1.8.1.8" /note="COGs: COG4232 thiol:disulfide interchange protein; InterPro IPR003834:IPR012336:IPR012335:IPR017936; KEGG: sfu:Sfum_2885 cycothcome C biogenesis protein, transmembrane region; PFAM: cycothcome C biogenesis protein transmembrane region; PRIAM: protein-disulfide reductase; SPTR: C0GMD4 cycothcome C biogenesis protein transmembrane region; PFAM: thioredoxin; cytochrome C biogenesis protein transmembrane region" /codon_start=1 /transl_table=11 /product="protein-disulfide reductase" /protein_id="YP_003806561.1" /db_xref="GI:302342032" /db_xref="GeneID:9493043" /translation="MPSARVSKFAATTSATMSFILVGAAFFVAGPAWAADEAASFSGR SLPVVMALSFLMGLLLNATPCVYPVIPITISYFGARDSGGKGGAMLAALLYWAGITVM YSALGTAAALTGGILGQALSYTPVIIILSAILVALALSMFGLWEVRMPTGLTRVAAKN RAGLSGSFFMGLFSGVLAAPCAGPVVAGLMGHVAEVGSPLYGLAVFVALSLGLGLPLA LVALFSERIAALLPRAGDWMIWVRKLFGFLLLAAAAYVAMPLLGQDAGRWLLAMIIAA GAVYLGFVHKGGARFFVFFKKAFGVAALVAAALVVWLLQAPDTHVAWEKFTMHAVRQA VNEHRPMAVKFTAEWCAYCKDLQRTTFSDPRVIKALGPFKTLVVDLTAGTPKERRIAR QMEVPGLPTLVFLDGSGGMMREVTLVGYENADEFLLRMKMVDVALRQDGADRAKPAII GQSDEE" misc_feature complement(<676950..677402) /locus_tag="Deba_0595" /note="Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl00515" /db_xref="CDD:153822" misc_feature complement(676266..676571) /locus_tag="Deba_0595" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:193797" gene 677847..679688 /locus_tag="Deba_0596" /db_xref="GeneID:9493044" CDS 677847..679688 /locus_tag="Deba_0596" /note="InterPro IPR008258:IPR018392:IPR002482; KEGG: pca:Pcar_2042 membrane-bound lytic murein transglycosylase D precursor; PFAM: Lytic transglycosylase catalytic; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: Q3A2X4 Membrane-bound lytic murein transglycosylase D; PFAM: Transglycosylase SLT domain; LysM domain" /codon_start=1 /transl_table=11 /product="Lytic transglycosylase catalytic" /protein_id="YP_003806562.1" /db_xref="GI:302342033" /db_xref="GeneID:9493044" /translation="MRKKLIVSLVVAVLALSGCATTQQRGDHASGKTCPPVNQQEQIK AGIAEELEALGEPEVVSKKPAPDECDPNKVEYDIPITINAEVEQGIDLFQNKIPKRFR MWLERSGRYIPMMRSVLRQYGLPEDLVYLALIESGFNCNAYSTAAAVGPWQFIAGTGK RFGLRIDYWVDERRDPVKSTHAAAQYLGDLYAEFGSWYLAAAAYNAGEGKIRRALKKY NANNFWSISRHHRDYLKDETRQYVPRMIAAAIIAKSPEKFGFNDLKYWPPMQFDEVRV HPGTSLDVAAKLAGVKNSELKALNPELRRWCTPPSGKYTLKIPFGARAQFEQGYAKLA PKDRQAHTGVAAVRVRRGDTLGRIAKTHHMRLSDLVALNPKVKPNSLRVGQKIIVSPG RGAVAYAEADAPVVSSRRRASLSASSTVPPARQGTRKIVYKVKPGDSLWDIAQGYNLD WHDVRRWNGQRSGNIQAGDRLVLYVPQSKAEAKRATAKAQSRTYVVRRGDNLWEIAQA HGVSTADIKRWNKMRGNRLEVGDRLTIHKSSPSKIATGNGQLVVASADESGVNDSSAG PEKTYRVRKGDTLSGISRRFNVSASKLRRLNSLRGDNIRVGDTLRVQ" misc_feature 678219..678593 /locus_tag="Deba_0596" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(678249..678251,678309..678311,678402..678404, 678456..678458) /locus_tag="Deba_0596" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 678249..678251 /locus_tag="Deba_0596" /note="catalytic residue [active]" /db_xref="CDD:29556" misc_feature 678891..679016 /locus_tag="Deba_0596" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature order(678894..678896,678903..678905,678918..678920, 678927..678929) /locus_tag="Deba_0596" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" misc_feature 678918..679295 /locus_tag="Deba_0596" /note="FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388" /db_xref="CDD:31578" misc_feature 679134..679265 /locus_tag="Deba_0596" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature order(679140..679142,679149..679151,679158..679160, 679173..679175,679182..679184) /locus_tag="Deba_0596" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" misc_feature 679173..679472 /locus_tag="Deba_0596" /note="FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388" /db_xref="CDD:31578" misc_feature 679323..679451 /locus_tag="Deba_0596" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature order(679326..679328,679335..679337,679344..679346, 679359..679361,679368..679370) /locus_tag="Deba_0596" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" misc_feature 679551..679682 /locus_tag="Deba_0596" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature order(679557..679559,679566..679568,679575..679577, 679590..679592,679599..679601) /locus_tag="Deba_0596" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" gene complement(679757..681511) /locus_tag="Deba_0597" /db_xref="GeneID:9493045" CDS complement(679757..681511) /locus_tag="Deba_0597" /note="COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterProIPR001789:IPR013105:IPR011717:IPR001440:IPR 011006:IPR019734:IPR011990:IPR013026:IPR005829; KEGG: hch:HCH_04305 FOG: CheY-like receiver; PFAM: response regulator receiver; hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: response regulator receiver; Tetratricopeptide repeat; SPTR: A6F3F5 CheY-like receiver protein; PFAM: Response regulator receiver domain; Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806563.1" /db_xref="GI:302342034" /db_xref="GeneID:9493045" /translation="MPGHPPEREPATGEGVTAELRAIDERAMRLERVDRRQCAALVAD DMPTMRLLLAQSLREAGFDNVVQAADGAAALAQLERHGCELILADWNMPGVDGLELLG RVRAHPRHGDVIFIMVTAENADDRVLQAIGHGLDDYLTKPVSPEKLSRRLELILARRR AAARAARLEAMGLPERAMDEYLMAARNNPQARWPQFGLGELLLRHGRLDEARQCYQRL LRQSPQAAAAMVGLGRVALQGGDAASAQSLFQWAREANPAYGGAVDALTELHLAQGRP EQAAEVLAQADDMPGGLGAHRLARQARLFHDLGQARQADQALQRALAQDPALADGPEG LLAARCGLALGRPAKAVQALRRLARQTDQPRLKIEAWLMLAEAHLSQGRPEQAEEVFA RMAQADAWPAGQRPFALHRLHAVAAAAYLRQGRPQAAAELVAVSRLMAPDDAENLAWL DHLTSQLDARPADAPAALASAEEYGRRGLELAAQGLHDQALAQYRLGLAVEPEAGRLH FNVAKLRLRAGQNEAAAESLALARRHGLAQGDWELLERLAELLLSLDDALAARKILLD ILELAPGRPTAQALLDQI" misc_feature complement(681068..681391) /locus_tag="Deba_0597" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(681068..681391) /locus_tag="Deba_0597" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(order(681086..681091,681098..681100, 681155..681157,681221..681223,681245..681247, 681377..681382)) /locus_tag="Deba_0597" /note="active site" /db_xref="CDD:29071" misc_feature complement(681245..681247) /locus_tag="Deba_0597" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(681221..681229,681233..681238)) /locus_tag="Deba_0597" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(681083..681091) /locus_tag="Deba_0597" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(680654..680887) /locus_tag="Deba_0597" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(680654..680656,680663..680665, 680675..680677,680711..680713,680756..680758, 680765..680767,680777..680779,680813..680815, 680858..680860,680867..680869,680879..680881)) /locus_tag="Deba_0597" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(order(680693..680698,680705..680710, 680717..680722,680798..680803,680810..680815, 680819..680824)) /locus_tag="Deba_0597" /note="binding surface" /db_xref="CDD:29151" gene complement(681512..682759) /locus_tag="Deba_0598" /db_xref="GeneID:9493046" CDS complement(681512..682759) /locus_tag="Deba_0598" /note="COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR003018:IPR003661:IPR003594:IPR004358:IPR 005467; KEGG: dal:Dalk_2141 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SPTR: Q1NPH4 Sensor protein; PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="GAF sensor signal transduction histidine kinase" /protein_id="YP_003806564.1" /db_xref="GI:302342035" /db_xref="GeneID:9493046" /translation="MPDSSDATAHAREDGKKLRSLLELTRVLAQAELDLGTRLQELVK VLARLAKAEKCSLMLAEGGRLEVRAATNRGLVGLQTPTEQLAVSTEVLRSGKAVCLAN IAESPFAALGRHGDASSYRTGSFMCLPLKDDGVSIGVLNLSDKRGQPHFDDDDLFLAQ AMADQVAVLISFSAMHQRLDQAYQDLRRSQRAKEELMNMLFHDMKAPLTALKEVLRLL AADKLAPQERGRYLALAGLDTEQLWRRVSNLLDLGRMEDGQMPLRPVPLRPAQLAAEV MDALSSVAGFYGVSARLLAQADPEIVADEDLTERILQNILVNALKFSAPENGGGGQIE VRVDADERFALIEVRDSGPGVDPALGRDIFQRYAHGGGAGSSGLGLYFCRRAAWLLGG EIALRNTPGGACFVISLPLEGGR" misc_feature complement(682214..682708) /locus_tag="Deba_0598" /note="FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203" /db_xref="CDD:32385" misc_feature complement(682208..682660) /locus_tag="Deba_0598" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature complement(681521..682210) /locus_tag="Deba_0598" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG3920" /db_xref="CDD:33706" misc_feature complement(681986..682186) /locus_tag="Deba_0598" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cl00080" /db_xref="CDD:153499" misc_feature complement(681533..681835) /locus_tag="Deba_0598" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(681545..681547,681551..681556, 681566..681568,681572..681574,681620..681631, 681695..681700,681704..681706,681710..681712, 681716..681718,681797..681799,681806..681808, 681818..681820)) /locus_tag="Deba_0598" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(681806..681808) /locus_tag="Deba_0598" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(681623..681625,681629..681631, 681698..681700,681704..681706)) /locus_tag="Deba_0598" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(682743..683345) /locus_tag="Deba_0599" /db_xref="GeneID:9493047" CDS complement(682743..683345) /locus_tag="Deba_0599" /note="COGs: COG1432 conserved hypothetical protein; InterPro IPR002790; KEGG: hmo:HM1_0800 hypothetical protein; PFAM: protein of unknown function DUF88; SPTR: B0TB28 Putative uncharacterized protein; PFAM: Protein of unknown function DUF88" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806565.1" /db_xref="GI:302342036" /db_xref="GeneID:9493047" /translation="MHDKRVAVLIDGGYMDKILYEAGSMKVSFSRLANKLARGKPLLR TYYYHCLPHLSQRPTPEEQTFYANKERFFNALRRLDDFEVRLGHLAPRGWDNAGNRIL EQKGVDVYLAVDVCRLSYTGSVSEIILVAGDGDLAPAVALAKDLGIKVCLWFGESPST RVSEQLWYICDQRRALDVAILEECLLSPAPERRDNDAGQL" misc_feature complement(682830..683336) /locus_tag="Deba_0599" /note="LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback...; Region: LabA_like; cd06167" /db_xref="CDD:100118" misc_feature complement(order(682941..682943,682947..682949, 682953..682955,683022..683024,683304..683306, 683313..683315)) /locus_tag="Deba_0599" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:100118" gene complement(683504..684301) /locus_tag="Deba_0600" /db_xref="GeneID:9493048" CDS complement(683504..684301) /locus_tag="Deba_0600" /note="COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: dal:Dalk_3435 beta-lactamase domain protein; SPTR: B8FLH7 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_003806566.1" /db_xref="GI:302342037" /db_xref="GeneID:9493048" /translation="MSAAPAMALTVLGSGCAELNPARSAPAYLLQLGPHALLLDLGQG AWRGLAATGVDAQQITAVLLSHQHPDHLADLLPLLFALNYDPRLKAGARITLVGHPGL ADVLAGLEAVFGHWLAWGPPTLLARWLEPGQGLELAGARLSTAKSAHTAMSLAYRLDW AGRGLVYLGDCQASAALVELARDAALLVAHCAGTETNPKPGHMPPEACGELAAAAGVK SLLLSHFRAEDDPEAARAAAGRLFGGPIWAAHDLMRLAVGPDGARPI" misc_feature complement(683528..684283) /locus_tag="Deba_0600" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(684298..685182) /locus_tag="Deba_0601" /db_xref="GeneID:9493049" CDS complement(684298..685182) /locus_tag="Deba_0601" /note="COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR004013:IPR016195:IPR003141; KEGG: chy:CHY_2227 phosphotransferase domain-containing protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: Q3A9Z4 PHP domain protein; PFAM: PHP domain" /codon_start=1 /transl_table=11 /product="PHP domain protein" /protein_id="YP_003806567.1" /db_xref="GI:302342038" /db_xref="GeneID:9493049" /translation="MTQSTTALIDLHTHTTASDGSCRPAEVVAAAKAAGLAAVAITDH DTTAGLDEALAAGRELGLEVIPGVEISVNGGPTGSMHVLGLFVDHHRPDFAQAMERLQ EARAQRNPQIAQKLQEMGVAVTMDMVRAHAGGGLVGRAHFAQAMVELGAVANRQEAFG RYLARGKPAYVEKYRLECDQAMALLRAAGGVPVLAHPGLLKQPPTALEALLRQLASMG LEGLEAHYSEHDELLTKRLQAMAGKLGLIVTGGSDFHGAAKPDIRLGTGLGLLRTPAS LLEPLRRRRDRIRALAAQ" misc_feature complement(684418..685161) /locus_tag="Deba_0601" /note="Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]; Region: COG0613" /db_xref="CDD:30958" misc_feature complement(684964..685155) /locus_tag="Deba_0601" /note="DNA polymerase alpha chain like domain; Region: POLIIIAc; smart00481" /db_xref="CDD:128757" gene complement(685210..685593) /locus_tag="Deba_0602" /db_xref="GeneID:9493050" CDS complement(685210..685593) /locus_tag="Deba_0602" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: sat:SYN_01292 response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q2LX20 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806568.1" /db_xref="GI:302342039" /db_xref="GeneID:9493050" /translation="MGKKILVVDDEQPILDLLGEAFTHAGYQVISTDSPEKALEILGR EKIPVMFLDLNLPGMNGLELCRRIRAVNPMAQIFAFTGFVSLFELADCREAGFDDYFT KPVKLAVLLKAAKDAFERLERWRGR" misc_feature complement(685282..685578) /locus_tag="Deba_0602" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(685282..685287,685294..685296, 685351..685353,685411..685413,685435..685437, 685564..685569)) /locus_tag="Deba_0602" /note="active site" /db_xref="CDD:29071" misc_feature complement(685435..685437) /locus_tag="Deba_0602" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(685411..685419,685423..685428)) /locus_tag="Deba_0602" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(685282..685287) /locus_tag="Deba_0602" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 685772..686554 /locus_tag="Deba_0603" /db_xref="GeneID:9493051" CDS 685772..686554 /locus_tag="Deba_0603" /note="COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: dal:Dalk_2384 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C8R0H6 ABC transporter; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806569.1" /db_xref="GI:302342040" /db_xref="GeneID:9493051" /translation="MNDQSHNQIDPHGPKAIELAGVSFGYGGRPVLEEVNLAVEQGDF VAVVGPNGGGKTTLLKLILGLIAPQRGSVRLLGRSPRQARAQVGYMPQQSSLDRAFPI TVLGAVLMGRLGNRPGFWRGADRQAAHLALEQVGLAALAQRPLAALSGGQRQRALVAR ALVGEPRLLLLDEPTSNVDVQAEEEFYDLLLRLNQRMTIVVVTHDLGFVSPYVRHVVC VNRQVLIHPTSDVTGEVISQIYGGPVNMVRHDHKKNGGCFHG" misc_feature 685811..686548 /locus_tag="Deba_0603" /note="ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]; Region: ZnuC; COG1121" /db_xref="CDD:31318" misc_feature 685823..686449 /locus_tag="Deba_0603" /note="ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-...; Region: ABC_Metallic_Cations; cd03235" /db_xref="CDD:72994" gene 686547..687428 /locus_tag="Deba_0604" /db_xref="GeneID:9493052" CDS 686547..687428 /locus_tag="Deba_0604" /note="COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: noc:Noc_2421 ABC Mn2+/Zn2+ transporter,inner membrane subunit; PFAM: ABC transporter; SPTR: C5SCP6 ABC transporter; PFAM: ABC 3 transport family" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806570.1" /db_xref="GI:302342041" /db_xref="GeneID:9493052" /translation="MAELWRAVAALAPGNEFLQALAQNAFLQNALLAGLLASLACGVV GGYVMARRITYIAGAIAHSVLGGMGAAGYARAVLGWDWAHPLLGATVAALVAAGLIGV VSLRAGQREDTVIGAIWAVGMAVGVLFIARTPGYNSELMSYLFGNILMVSRADLWLMA GLDAVILAVAVLFHNQLVAVCFDEEFARLRGLPVGLHYFLLLALTALTVVLLSTVVGI IMVIALLTLPAGTAASFSRRLGAIMAWAVAIAMLVTSAGLALSFGPDLPTGAVIILLA GALYLAAAGLAWLLRRG" misc_feature 686667..687332 /locus_tag="Deba_0604" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature order(686679..686681,686691..686699,687057..687062, 687066..687074,687078..687083,687087..687104, 687108..687116,687240..687242,687261..687263) /locus_tag="Deba_0604" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature order(686694..686696,686700..686702,686715..686717, 686877..686879,686883..686888,686895..686900, 686907..686912,686919..686921,686928..686933, 686937..686939,686967..686972,686979..686981, 687207..687209) /locus_tag="Deba_0604" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(686937..686939,687009..687011,687183..687185, 687195..687197,687330..687332) /locus_tag="Deba_0604" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene 687531..688526 /locus_tag="Deba_0605" /db_xref="GeneID:9493053" CDS 687531..688526 /locus_tag="Deba_0605" /EC_number="2.8.1.6" /note="COGs: COG0502 Biotin synthase; InterProIPR007197:IPR010722:IPR006638:IPR013785:IPR 002684; KEGG: gsu:GSU1584 biotin synthetase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q74CT7 Biotin synthase; TIGRFAM: biotin synthase; PFAM: radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase" /codon_start=1 /transl_table=11 /product="biotin synthase" /protein_id="YP_003806571.1" /db_xref="GI:302342042" /db_xref="GeneID:9493053" /translation="MSQTPFPDPLALAGRPPTPAEAAAWLEPDDLGQLGRLLAAAGAA RQRWQADAVELCAIVNARSGRCSEDCAFCAQSAHHHTDAQVYPLLSATEIAQRAERAA DCGALRFGLVTSGKGCPSGRDLDEICRALELIVKRGRILPCASLGLLNAAQARRLVEA GLRRYHHNLESGPSYFPSICASHAFEERVETVRVAQQAGLEVCCGGIVGMGETPAQRA ELAFAVAELAPQSVPVNFLSPIAGTRLAHLRPMGALQALAALAVFKLIMPQAQIRACG GRAQILGDLAPLMFLAGASAAMTGNYLTTQGPQSQRDLAVIAALGLRPVLPPREE" misc_feature 687687..688496 /locus_tag="Deba_0605" /note="biotin synthetase; Region: bioB; TIGR00433" /db_xref="CDD:161876" misc_feature 687717..688304 /locus_tag="Deba_0605" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(687726..687728,687732..687734,687738..687740, 687744..687752,687864..687866,687879..687884, 687957..687965,688032..688034,688149..688151, 688236..688241) /locus_tag="Deba_0605" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature 688227..688502 /locus_tag="Deba_0605" /note="Biotin and Thiamin Synthesis associated domain; Region: BATS; cl06149" /db_xref="CDD:157061" gene 688529..689866 /locus_tag="Deba_0606" /db_xref="GeneID:9493054" CDS 688529..689866 /locus_tag="Deba_0606" /note="COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814:IPR015424:IPR015421:IPR005815; KEGG: hmo:HM1_0395 adenosylmethionine-8-amino-7-oxononanoate transaminase; PFAM: aminotransferase class-III; SPTR: A1HTZ2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase" /codon_start=1 /transl_table=11 /product="adenosylmethionine-8-amino-7-oxononanoateaminotr ansferase" /protein_id="YP_003806572.1" /db_xref="GI:302342043" /db_xref="GeneID:9493054" /translation="MSNAAEIVQKDLACLWHPFTQQKIWPSEPPLVISGGQGNWLVDI DGKRYFDGVSSLWVTVHGHGEPAINQAIKEQVEALDHSTMLGLTHPKAALLAAELARL TPPSLSRVFFSESGSTAVEIALKIAYQYWQLKGQSKKRTFVSLAEAYHGDTIGAVSIG GIELFHEVYRPLLFAKHTIAQPNKNKPGSAERSVADLARVLAEHAEEICALVIEPRVQ GAAGMIIQPDGYLSTVCRMAHEAGVLVVADEVATGFGRTGAMFACQLEGVCPDLMALG KGLTGGVLPLAATMASEEIYEAFLGEFDEFRHFFHGHTYTGNPIACAAALANLALMQS RDILANVAARAAQLARGLAELARLDHVVDVRQQGMMCGVELAADKASGLAYAPGRRMG HQVIMAARRRGVIIRPLGDTVVLMPPLSSSEQEIAFLLEVVGQAIVEATEEGA" misc_feature 688529..689860 /locus_tag="Deba_0606" /note="adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional; Region: PRK06916" /db_xref="CDD:180746" misc_feature 688547..689839 /locus_tag="Deba_0606" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature order(688871..688879,688973..688978,688982..688984, 689168..689170,689270..689272,689276..689281, 689357..689359) /locus_tag="Deba_0606" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature order(688874..688879,688973..688978,689168..689170, 689270..689272,689279..689281,689357..689359) /locus_tag="Deba_0606" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 689357..689359 /locus_tag="Deba_0606" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 689863..691062 /locus_tag="Deba_0607" /db_xref="GeneID:9493055" CDS 689863..691062 /locus_tag="Deba_0607" /EC_number="2.3.1.47" /note="COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterProIPR004839:IPR015424:IPR015421:IPR004723:IPR 001917; KEGG: gsu:GSU2629 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: Q749W3 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase" /codon_start=1 /transl_table=11 /product="8-amino-7-oxononanoate synthase" /protein_id="YP_003806573.1" /db_xref="GI:302342044" /db_xref="GeneID:9493055" /translation="MSQGCAHPALAALVRRMADRRRDGLHRSLRGVGPAGGPRVIVDG RQVLLMASNDYLGLSRHHRLARAASRAALAHGAGAGASRLISGTLDCHQQLERQIAAF KKTEAALFFCTGYMANVGCVAGLCGPGDFIVSDALNHASLIDACRLGRATVKVYPHAD AAAAQALLAQAPAGALKLLITDGVFSMDGDLAPLPELLAVARRHGALLLVDDAHATGV WGAGGRGSLEHFGLAPESDIIQVGTLSKALGGLGGFVAGAAVVIDCLINLARPFVFST AAPPAQVAAAAEALRVVEDEAHLRHKLHGLCALLRGLLEEGGLRLLSPAGPIIPILVG DAHRALAMGQALLAEGVFAPAIRPPTVPQGSSRIRLTVTAAHEEADMRFAARAVLRAA REVGLCP" misc_feature 689890..691005 /locus_tag="Deba_0607" /note="7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]; Region: BioF; COG0156" /db_xref="CDD:30505" misc_feature 689995..691005 /locus_tag="Deba_0607" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(690202..690207,690214..690216,690406..690408, 690493..690495,690502..690504,690589..690591, 690598..690600) /locus_tag="Deba_0607" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 690598..690600 /locus_tag="Deba_0607" /note="catalytic residue [active]" /db_xref="CDD:99742" gene 691053..691793 /locus_tag="Deba_0608" /db_xref="GeneID:9493056" CDS 691053..691793 /locus_tag="Deba_0608" /note="COGs: COG0132 Dethiobiotin synthetase; InterPro IPR004472; KEGG: bbe:BBR47_54630 dethiobiotin synthetase; SPTR: A1HTZ3 Dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: dethiobiotin synthase" /codon_start=1 /transl_table=11 /product="dethiobiotin synthase" /protein_id="YP_003806574.1" /db_xref="GI:302342045" /db_xref="GeneID:9493056" /translation="MPLGKGLFIAGSDTGVGKTMVSAGLTAALRQRGLDAGYLKPVGT EAQCVDGRPVNPDAVFVGRMAELPEPAWRLNPFCLSAPLSPLAAARREGVTLDFGQIV AACRQALDEREFCVIEGAGGVMVPLCEGKLMLDLMAELALPVLVVGRPGLGTINHTLL TMLAARSRGLAVVGFVFSGGGEGVELDPSRHANPALTEEFGGAPYLGALPDMGGGEIS PRALRAAAGAWLDIDGLLAALNRATNQG" misc_feature 691074..691562 /locus_tag="Deba_0608" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature <691389..691682 /locus_tag="Deba_0608" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene complement(691768..693222) /locus_tag="Deba_0609" /db_xref="GeneID:9493057" CDS complement(691768..693222) /locus_tag="Deba_0609" /note="COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR004772:IPR003445; KEGG: dba:Dbac_2454 potassium uptake protein, TrkH family; PFAM: cation transporter; SPTR: C7LRM5 Potassium uptake protein, TrkH family; TIGRFAM: potassium uptake protein, TrkH family; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family" /codon_start=1 /transl_table=11 /product="potassium uptake protein, TrkH family" /protein_id="YP_003806575.1" /db_xref="GI:302342046" /db_xref="GeneID:9493057" /translation="MNVAFAISLVGLICLGVGLCMLLPLAVALIHAEPGWLAFLGGSF VCCLLGGVLFWSFRDRRVKELNHREGMAVVGLSWLAAGVLGGLPLLLSGDFKSWADAV FESVSGFTTTGASVLTNVEAAQKCVLFWRALTHWLGGMGFIVLGVAVLPFLGVGGMQL YKAEAPSPTPDRLVPRIADTAKALWWIYVLLTAAEALLLLLGGMDLFDSLCHAMATMA TGGFSTKNLSVGHWPSPFIQWVVTIFMILAGINFTLHFQLFSQRRWDAFWRDEECRFY LALTVGAALIITICLWLAQGLDTASALRLAFFQTATILTTTGFATADYTLWPPLALAV LTMLLFIGGSAGSTGGGPKVMRVLVVLKQSLAEFGRLIHPRMVNPVKLGRRTVDKQVV AAIWAFMGLYLACFALTTLGLAALGLDGQTAFSAAIACLGNIGPGLGPIVGPVGNYAS LPEAGKWLLSAAMLVGRLEVYTVLVLFIPGLWRD" misc_feature complement(691771..693153) /locus_tag="Deba_0609" /note="Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: TrkG; COG0168" /db_xref="CDD:30517" misc_feature complement(691771..693153) /locus_tag="Deba_0609" /note="Cation transport protein; Region: TrkH; cl10514" /db_xref="CDD:187005" gene complement(693235..694596) /locus_tag="Deba_0610" /db_xref="GeneID:9493058" CDS complement(693235..694596) /locus_tag="Deba_0610" /note="COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148:IPR006037:IPR016040:IPR006036; KEGG: dol:Dole_3218 potassium transporter peripheral membrane component; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: A9A0A2 TrkA-N domain protein; PFAM: TrkA-N domain; TrkA-C domain" /codon_start=1 /transl_table=11 /product="TrkA-N domain protein" /protein_id="YP_003806576.1" /db_xref="GI:302342047" /db_xref="GeneID:9493058" /translation="MRVLIIGAGEVGYHTALRLSRENHRVVLVDQDPEKIKAVNEQMD VQTLVGKGSSPAALLAAGVREAELVVAVTDSDEVNMTACRFAQALAPAVTKVARIRSM DYLHFFEEHDPRQFGVDLVINPEREVANQIMQLIYVPAANSVADFAGGKVKLLGLRAP VTSPILKRPLHELRMSEGSRFLVAAIERDGEVIIPRGDDHLRADDRAYVVVREDMINE VMEFFSLRNEPVRKLVVVGGGAIGRLVAERAQRRDIKARVIEKDEDRCQMLVDQLDDV IVLHGDGTDMSLLREENIGAADVFAAVTDDEEDNVLIALMGKKMGARRTVARVAHMGY VPLVSSLGIDLVVSPRFAAVGAILRYLRRGKVLAVSALRDEGAEVIEVEAQATSAMVG KPLAQVKMPSGALVAAVVRGEEVEIPNGQTVINPGDRMVIFMLTKVLSKVEKLLTVSL EYF" misc_feature complement(693244..694596) /locus_tag="Deba_0610" /note="potassium transporter peripheral membrane component; Reviewed; Region: trkA; PRK09496" /db_xref="CDD:181909" misc_feature complement(694225..694590) /locus_tag="Deba_0610" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(693928..694137) /locus_tag="Deba_0610" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" misc_feature complement(693550..693897) /locus_tag="Deba_0610" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(693259..693462) /locus_tag="Deba_0610" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(694696..695847) /locus_tag="Deba_0611" /db_xref="GeneID:9493059" CDS complement(694696..695847) /locus_tag="Deba_0611" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: mxa:MXAN_2921 mannosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Q1D891 Putative mannosyltransferase; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806577.1" /db_xref="GI:302342048" /db_xref="GeneID:9493059" /translation="MTAAELRPELGGLRVVLVHDWLTGMRGGEKVLECFCRLFPQAPI LTLVHAPGSASPLIESREIHASFLQRMPLAQSHYRHYLPLMPLAIGRLRPPPCDLLLS SSHCVAKGARPPKGARHVSYLHTPMRYIWDMYDQYFGPGRGGLARHVMPFARPWLRRW DVATAKGVDFFLANSHHVAGRIQRFYGRQAKVIHPPVETGRFAPDGRPRGYYLALGAL VPYKRVDLAVRACTLTRRPLKVVGSGPEEAKLRAMAGPTVEFLGWRPDSELPGLYAGA KALLFCGEEDFGITPLEAMASGAPVIALARGGALETVVGPQDPQGRPATGRFFKKQEP EALVEAMELLEGDAFDPLALRAHAQAFDTAAFEQNMADALVEALAGHGR" misc_feature complement(694714..695808) /locus_tag="Deba_0611" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature complement(694735..695808) /locus_tag="Deba_0611" /note="This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea; Region: GT1_wbaZ_like; cd03804" /db_xref="CDD:99976" misc_feature complement(order(694978..694980,695044..695046, 695197..695205,695767..695769)) /locus_tag="Deba_0611" /note="putative ADP-binding pocket [chemical binding]; other site" /db_xref="CDD:99976" gene complement(695844..696959) /locus_tag="Deba_0612" /db_xref="GeneID:9493060" CDS complement(695844..696959) /locus_tag="Deba_0612" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: mxa:MXAN_2920 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Q1D892 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806578.1" /db_xref="GI:302342049" /db_xref="GeneID:9493060" /translation="MNICYDMRVYTGQMHGMARYGLELLRAMLDEDKDLAAAVLVRRP EHASILPRGPRIVAVVANFAPYGLGGQLKLPTLLRAMKHDLYHCPFYAPPVVAPGPMV MTIHDLIHLRFPQDHGLRHRLFYKYVVGPAAHKAGAVLTVSEHSKRDICELLQLSPGK VVVTPNGVSGAFRPLAAADRPTMATSLGLPARYILGVGNPKPHKNLIALVEAHRMLRA TPPTGAGPVPPLVLAGVKKGELRGVNPDKDLVMFPIADDVTLATAYAAAEAVCIPSLY EGFGLPALEAMACGAPLVASNRASLPEVVGEAALLCEPEPAAIAEALGRLLVDEVLNR RLRLAGPERAALFTWAKAARQTLAVYRRLLGQEQGRP" misc_feature complement(695859..696959) /locus_tag="Deba_0612" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature complement(695886..696956) /locus_tag="Deba_0612" /note="This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the...; Region: GT1_mtfB_like; cd03809" /db_xref="CDD:99981" gene complement(696965..698101) /locus_tag="Deba_0613" /db_xref="GeneID:9493061" CDS complement(696965..698101) /locus_tag="Deba_0613" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: rrs:RoseRS_3332 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5UYJ0 glycosyl transferase, group 1; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806579.1" /db_xref="GI:302342050" /db_xref="GeneID:9493061" /translation="MRICLDIRALTPRPTGVGNYILGLLEGFKRVAPTQEICLLARLD NLTCLPGLPNGKLIRAAFAHESHPLGDAWEHLFLPRRLKKDGVDLLHGPAMLAPFDGR GLAVVATVHDLVPFTHPETVPPKYASYMRWHLGRLARSRAWFIAPSQATADELQEILN VDPARVTVVAEAARAAFRVIDDRQALEAARYRLGLDGPFVLYVGNIEPRKNLARLIPA FLRAADQVLPQCKLVITGQRAWLAQRLKSQLGAALDDKRLVFTGYVPDDELPLLMNLA LAFAFPTLHEGFGLPALEALACGAPLLAGAVGAVPEVVGQAAVLVDPHSDEAIAQGLA RLMQDESLRRQLAQAGPERAARFSWDQAARQTLDVYHRACREEA" misc_feature complement(696971..698101) /locus_tag="Deba_0613" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature complement(696998..698098) /locus_tag="Deba_0613" /note="This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the...; Region: GT1_mtfB_like; cd03809" /db_xref="CDD:99981" gene complement(698105..699070) /locus_tag="Deba_0614" /db_xref="GeneID:9493062" CDS complement(698105..699070) /locus_tag="Deba_0614" /note="COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: glo:Glov_2754 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: B3E7F0 glycosyl transferase family 2; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806580.1" /db_xref="GI:302342051" /db_xref="GeneID:9493062" /translation="MDLSVVIPVYNEADNVEPLHAEVHAVLEKTGLDYEVVFVDDGSK DETLAILERLASQQPRTVVIAFRRNFGQTAAMSAGFDHALGQVVVTMDGDRQNDPADI PKLLAKLDEGYDIAAGWRYDRQDAYLNRKLPSKLANGLISRITGVELHDYGCTLKAFR QEVVRGIRLYGEMHRFIPAIASHMGVRIVEVPVNHRPRIAGKTKYGIGRTPRVLLDLI TVKFLLSYSTRPIQIFGRWGLISGALGFLLGLYYTILKLFFSEPMWGKPGVILAVLLM LVGVQLISLGLLGELQVRTYYETQAKPIYNVLRVIGRPAPTDGQG" misc_feature complement(698111..699064) /locus_tag="Deba_0614" /note="undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714" /db_xref="CDD:182669" misc_feature complement(698516..699058) /locus_tag="Deba_0614" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature complement(order(698789..698791,699041..699043, 699047..699049)) /locus_tag="Deba_0614" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133030" misc_feature complement(order(698789..698794,698948..698950)) /locus_tag="Deba_0614" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature complement(698789..698797) /locus_tag="Deba_0614" /note="DXD motif; other site" /db_xref="CDD:133030" gene complement(699072..699626) /locus_tag="Deba_0615" /db_xref="GeneID:9493063" CDS complement(699072..699626) /locus_tag="Deba_0615" /note="InterPro IPR007404; KEGG: hch:HCH_06173 hypothetical protein; PFAM: membrane-bound metal-dependent hydrolase; SPTR: A0YXX1 Putative uncharacterized protein; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457)" /codon_start=1 /transl_table=11 /product="membrane-bound metal-dependent hydrolase" /protein_id="YP_003806581.1" /db_xref="GI:302342052" /db_xref="GeneID:9493063" /translation="MATPLGHALAGVALGSLATGRHDLIGPRADLALFAALAVLPDLD FIPGLLSGDMAAWHHGASHSLGAALLCALAMALIGRRRGGAAIWWAWAGFMVWASHVL VDYLTLDTLPPHGVPLFWPFSAEYFRTDNWVFLDVKRGLSMAVFWHDIKAAVWETLIL APLAAWGAWFRLRRAAIAQMETEA" gene complement(699626..700810) /locus_tag="Deba_0616" /db_xref="GeneID:9493064" CDS complement(699626..700810) /locus_tag="Deba_0616" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: gbm:Gbem_3449 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: B5EBF0 glycosyl transferase group 1; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806582.1" /db_xref="GI:302342053" /db_xref="GeneID:9493064" /translation="MKILGIAPTPFFADRGCHMRILGEIQALQRRGHEVLLLTYHLGR DIEGVPTRRTKNVGWYDKLEAGPAMGKFYLDWLLLRETIKAIGAFRPDVIHGHLHEGA FIGLLARKLTGRKLPVVFDVQGSLTRELDSYGWLNKMPLVRPLFWAVEKWITRGSEQC VGSNVDVGEFLRSTMGLPDSRVHTIIDGVHMGFFDGAKGRDLRAELGIAPQRPIVLYT GALLASKGTDNYFNAIPEVLAGAPEAFFLVVGYPVEHSQALVQRLGVAEHVKFMGQVD YFELPDYLAIGDVAVDPKEDVAGEASGKIINYMGGGLPVACFDNANNRAFLGDTGSLA TEKTPSGLAKAILALLADPAACKAKGQAARQRVAELFTWEAGGRRYEEVFQAALAQMG GR" misc_feature complement(699641..700810) /locus_tag="Deba_0616" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature complement(699656..700807) /locus_tag="Deba_0616" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" gene complement(700938..701921) /locus_tag="Deba_0617" /db_xref="GeneID:9493065" CDS complement(700938..701921) /locus_tag="Deba_0617" /note="COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: amr:AM1_2706 NAD-dependent epimerase/dehydratase, PFAM: NAD-dependent epimerase/dehydratase; SPTR: B0C822 NAD-dependent epimerase/dehydratase, PFAM: NAD dependent epimerase/dehydratase family" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_003806583.1" /db_xref="GI:302342054" /db_xref="GeneID:9493065" /translation="MKILVTGGTGFTGAALVERLLGLGHQVVALDNKEGLKPQALRDM GAEVVIGSVTDEPLVRRCMRGVEVVHHLAAAFREMDVPRNYYDQVNEGGARLVAQAAQ DEGVRKFIYCSTCGVHGNVERPPADENAPINAADYYQQTKYNGEVALRPFIDAGMKAT ILRPAAIYGPGDPERFWMIYSRVQKGVFPMFGSGKTLYHPLYIDNLIDAFLLAQEEDK GLGQAYLIADEQYYPIEELVTRVAKAMGKPVRIPHFPVWPVVAAGHVCEKLCKPFGVA PPIFPRRVDWYRQNRAFDIGKAKRELGYQPKVGIDEGLRKTYEWYVREGYL" misc_feature complement(700941..701921) /locus_tag="Deba_0617" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature complement(700959..701915) /locus_tag="Deba_0617" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(701421..701432,701496..701498, 701508..701510,701580..701588,701700..701708, 701826..701828,701829..701831,701886..701888, 701892..701897,701901..701903)) /locus_tag="Deba_0617" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(701496..701498,701508..701510, 701580..701582,701652..701654)) /locus_tag="Deba_0617" /note="active site" /db_xref="CDD:187535" gene complement(702157..703203) /locus_tag="Deba_0618" /db_xref="GeneID:9493066" CDS complement(702157..703203) /locus_tag="Deba_0618" /note="KEGG: glo:Glov_0605 hypothetical protein; SPTR: B3E3C0 Putative uncharacterized protein; PFAM: Prolipoprotein diacylglyceryl transferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806584.1" /db_xref="GI:302342055" /db_xref="GeneID:9493066" /translation="MNELLFVLGLAALCGGLLFWACRHLPGERWQFLASVPLAKEPGG AWRGLNITYYGFFSATAYATAAALLVLMLRAAGVSDLGVAAFVLPLLSACAPASRLVA RWVEHKPATFTVGGASFVGLIIAPWLCLLAAYCLPGGAGLNVTTALAALLTAYAVGEG LGRLACISFGCCYGKPLDQCPAWAQRIMAGRGFVFHGHTKKIAYESGWEDRPVFPIQA VTSIVLTGCGLICLYMFLLGLHQYVVWLAVTVSGLWRFFSETLRSDYRGEGRISAYQW MALATIPYGLAMPLIFGPGAAAPPSLAVGLAALWRPGMLLALQGLWLGAMLYMGRSRT TASTLCFHVVQSEL" gene complement(703200..704243) /locus_tag="Deba_0619" /db_xref="GeneID:9493067" CDS complement(703200..704243) /locus_tag="Deba_0619" /EC_number="4.1.1.65" /note="COGs: COG0688 phosphatidylserine decarboxylase; InterPro IPR003817; KEGG: gur:Gura_1505 phosphatidylserine decarboxylase-related; PFAM: phosphatidylserine decarboxylase-related; PRIAM: phosphatidylserine decarboxylase; SPTR: A5GE49 phosphatidylserine decarboxylase-related; PFAM: phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor" /codon_start=1 /transl_table=11 /product="phosphatidylserine decarboxylase" /protein_id="YP_003806585.1" /db_xref="GI:302342056" /db_xref="GeneID:9493067" /translation="MSRTPHQYIERHSGRVCEERLFADRLIGCVYNGLREKSQRAFKA LTSARASEALGYLNYDTVLGSRLKSGPAMLRALGVDPAECLDDPKGLDTARKVFERRI RYWRCRPMPEDPAAIVSPSDARILLGSLQRESMLFLKDKFFDFRELLGEGKTRWLRAF ADGDWAVLRLTPDKYHYNHTPVAGRVIDCYGLEGDHHSCNPRAVVRMVTPFSKNRRLI SVIDTDQPGGTGCGLVAMVEVVALMVGDIVDCYSARRYDDPQPLTPGLFVEKGAPKSL FRPGSSTVVLLFQAGRARFAADLLAAQRRLDVSSRFSLGFGAPLAEVDVAVRSAIATA IAPNGAGKFGENR" misc_feature complement(703377..703940) /locus_tag="Deba_0619" /note="Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656" /db_xref="CDD:194662" gene complement(704215..706650) /locus_tag="Deba_0620" /db_xref="GeneID:9493068" CDS complement(704215..706650) /locus_tag="Deba_0620" /note="KEGG: ppd:Ppro_2684 hypothetical protein; SPTR: A1ASG7 Putative uncharacterized protein; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806586.1" /db_xref="GI:302342057" /db_xref="GeneID:9493068" /translation="MKTISLRGWANGRKDPPAKALAAIGVDASTPERLAATTPFAAGD ATCGCENELQAVVSGARQDVDLPRTIEQSNYFRNIVKRRDRGELPKKVVTDLEKWLSD NPDGVWENSWVRLPLAALSPLARQVLEADLAADKADPAAGRRGDAHRFFARDGEEEML RVPVSYLLKLALADAVGRQAELPEVLRQAGLGLCEHFLSDNTSPETYSFYVSTLTPGE GMGRAVARETALRFLLTHLLTIHAQGPMGLGQRGQRVTVYFAPHPPVRQKRLNECITD AFYRELFMNPCLSGWDRGEDKHRYMHLCHEVLSRAQLNAVARLREAGVITNNLVVLPN ASNISLANNGVHVTLGSKRLSAALAGGGAFGAAQEKYLGDLATKFIEHFLPLFVGVHS AAPYRLGFADFHPERVLGFLPYELDYTHLRMIWRRWRKKASLKARPFGLRLTPFGPPW LDRALAAVFGLRGDLAPDFRLLDYLAAVMSTHSSPALDGSLGNLERLKADLAQMGVFD QRMPPYLLHRQRQFAVMGFSGFEGRHYSLFPSLDGDLAPAVGLQCLLTALAFKFIAGG LLDHAHIPDDPQTESERRQVFFGAAIGLPTFFVRADSGNLLLKMIQEDVRDVRPSRRY PGYLRVRHAQYRQALLRLIRREGAALIESMGLEDVLDDLARRLEDPRHTAAGRLVRGA LAQIGASDPLAVEPRQFNAAAEEYYRGGLRLRHLREAMDHLEGVLAPERLSVASQDPR WAGALGHACAGRDPRAIVAALRPRLLADELPPAEALRLINLLVLCLGLERTRQARHAN PEDAHVPDAASIH" gene 706896..708176 /locus_tag="Deba_0621" /db_xref="GeneID:9493069" CDS 706896..708176 /locus_tag="Deba_0621" /note="COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: dal:Dalk_3066 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: B8FBK3 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component" /codon_start=1 /transl_table=11 /product="2-hydroxyglutaryl-CoA dehydratase D-component" /protein_id="YP_003806587.1" /db_xref="GI:302342058" /db_xref="GeneID:9493069" /translation="MASPYDAMWQELGLDLAAHEQLLQVLGGGYQQVFLGQPNRPAGM DYFNFVMSEVHGLRVKELVEAQAAGKKVIGSFCVFVPEEVVRATGATLVGLCTGADFA AEEVDKLLPRNTCALIKSAFGFKLGKICPFIEAADMIVGENTCDGKKKAYETMGKMVP NLYVMDLPQVKSDQGRALLKAEFARFLKAVEDLTGVTIDAAKLREGMRIVNDKRKALA RLNALRAADPAPISGLDALLINQVAFYDDPIRFTGSVNALCDELEARVADGQGAMEKG APRVLLSGCPMAVPNWKLPWIIEQAGAVIVGEESCVGERGARNLVDDSGQSVDELLEA LVDRYFQVDCAIFTPNPQRLAHVEQMAAAYKAQGVIHYCLQFCQPYQMEALPVEQALK AQGLPALRLETDYSQEDAGQLQTRVEAFLEMLEK" misc_feature 707100..708173 /locus_tag="Deba_0621" /note="N subunit; Region: benz_CoA_bzdN; cl11464" /db_xref="CDD:143741" misc_feature 707121..708167 /locus_tag="Deba_0621" /note="2-hydroxyglutaryl-CoA dehydratase, D-component; Region: HGD-D; pfam06050" /db_xref="CDD:191439" gene 708398..708988 /locus_tag="Deba_0622" /db_xref="GeneID:9493070" CDS 708398..708988 /locus_tag="Deba_0622" /note="InterPro IPR001647:IPR012287:IPR009057:IPR011075; KEGG: dps:DP1699 transcription regulator; PFAM: regulatory protein TetR; SPTR: Q1JVZ2 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003806588.1" /db_xref="GI:302342059" /db_xref="GeneID:9493070" /translation="MSKPISRKQAIRAAAIELFAAKGFQGASTAEVAKLAGVSEGTIF YHFQTKEGILLSLIDDMFDGYVAVIGQSIAEAATGLEAIECYLRGHLRHVEERWNEIS LLIRDVPPSFKDDDSPQRAHVLSRIAQLEALIVAAIEKGQIDGSIRPCDPAAIARILR GRLKGLTSMMALEKFSITEMSDELCQFCRRALAARA" misc_feature 708461..708982 /locus_tag="Deba_0622" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature <708461..708568 /locus_tag="Deba_0622" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 709033..710169 /locus_tag="Deba_0623" /db_xref="GeneID:9493071" CDS 709033..710169 /locus_tag="Deba_0623" /note="COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: rmr:Rmar_0901 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: D0MH10 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_003806589.1" /db_xref="GI:302342060" /db_xref="GeneID:9493071" /translation="MSMIGKKMIWLIFVALTAAFLAGCGGEEQKAEVKARGVPVITQP ATARQVEDILRQVGTLDSAMRSTMRARVDSSVVHLSFQEGARVKKGDVLVRLDDAKIL AAIDNLQAGIKQLGVKLAFQQKTLERNRQLLKRSAIAQHQFDSLESDFHQTELAITQA KADLARQREMLADTVISAPFDGVVGARTIAVGDYLKTGDKVVTVVGLDPLEVGFNVPE RYKPKLALGHKVHVQVAAEGDRLFDGEIFFIAPIVDPATRSFQVKARVGNRDGRLNPG MFANVRLVADVRPQAVTIPWTAVIVTEEGSYAYVVENGKAKKVVLNLGQVTHDWAEVL DGAIKPGDELIVEGKFAARDGAPVVIKNQGQEKTSPAGQAKQGA" misc_feature 709150..710112 /locus_tag="Deba_0623" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 710173..713292 /locus_tag="Deba_0624" /db_xref="GeneID:9493072" CDS 710173..713292 /locus_tag="Deba_0624" /note="COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: hoh:Hoch_6213 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: D0LMK0 Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="YP_003806590.1" /db_xref="GI:302342061" /db_xref="GeneID:9493072" /translation="MFLPNFSIRRPVAATMIIAALVVFGLIGISRLGVALYPDVDFPM VTVTTVWENAMPEEIDNQITDKLEDAIAGVSGIKHITSQSMQGKSTITVEFELGKDVD VAAQEVRDKVSAKLYDLPDDIETPVINKLDINAQPIIWLAVTGQQAIENLTKLADEQL RPMLQRIMGVGEVRVGGARAKEVHLLLNRQKLAAYGVGVDEVSRAVKSQHVELPGGKI ESKDDEFLIRIMGEFASPEAFNDLIVTWRDGHPVRLRELGRAVSAREETSAVARFTTK DGAEKTVGLGISPRSGANQVEIAQNVRAMLPQIRAMVPEGVKIHIASDSTKFIEDSIA EVREQLFLGGVIAALVIFVFLQNTRTTIISALAIPTSIIATYACMYWLGFTMNNMTML ALVTAVGLVIDDAIVMVENIFRHRAELGKGPFQAAYEGSHEISFAVVATTLALSGVFL PVAFMGGMVGKFFYEFAVTLAFAVVASTLVALTVVPMLSARFLTVSESRSRLFGVFND MMNWLSRTYRPMLAWGLRHRLSMVALGVVALLVGGFLFSLLGKEFVTEDDQSRFMVRL ETPLSYSTSKTDELLRRLEKELIVLPAVDHFFSVAGWNGANKAIAIVELVGKKERPLT QAQVQGQVRKLTEELPDVRASVSPIGIFGGMARNEEIQFVIQGPDIAELDRFSRQIMD RLENTPGYVGITRDLEIGKPEVRVLIDRERAADLGVSVSDIATAVASLLGGVKIADYK EGGKRYDVRVRLTERQRLLPQDVQRIYVRAADGKLHDISGFITLQTGVGPSVINRLDR SRSATVYANLNGKLLGDALPEVRAIGQEILPEGYNSKFAGRAESFDETVGYIAFAFML AILLTYMVLAAQFESFVQPFSIMVGLPLSFIGAFGLLLLLGNTFNLFSMIGLVLLVGL ATKNGVLLIDYANQMRQAGMGVHEALIEAGATRMRPILMTAVSTIGGVIPVALGLGEG AESRQPMAVAIAGGMLSSTVLTLLVVPVIYSYMDQMVNWPPLKRFQARIMAKRRGQQA PVGGDQPAA" misc_feature 710179..713190 /locus_tag="Deba_0624" /note="Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841" /db_xref="CDD:31183" gene 713498..715072 /locus_tag="Deba_0625" /db_xref="GeneID:9493073" CDS 713498..715072 /locus_tag="Deba_0625" /note="COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterProIPR003018:IPR003593:IPR002078:IPR009057:IPR 020441:IPR002197; KEGG: sfu:Sfum_1010 NifA subfamily transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: GAF domain protein; ATPase AAA; SPTR: C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: Nif-specific regulatory protein" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806591.1" /db_xref="GI:302342062" /db_xref="GeneID:9493073" /translation="MDSRLIEAELQVLHEISSILGKALDLQRALEMVLSVLSEKLAMK RATVTLLDKAGGRLQIRASHGLSAEERGRGVYQMGEGVTGEIGRSGQPFWSPDVSLEP KFLNKTQSRRLDKEKLAFVGVPVVLRGQVIGVLTVDRLFDADVSAEEDIRFLSIVAQI IGQFVHLNQEVEARERTLRRQNIQLKREVSATYNDFFIIGRSEAMKRVQQMISRVAPS MASVLLLGESGTGKTLVARIIHELSLRAEGPFIKVNCAALPGNLLESELFGHEKGSFT GAHAARAGRFEEADGGTVFLDEIAEMPLELQAKLLRFLQDKEFERLGSSRTIKVDARI VAATNRELPAMVDAGSFRADLYYRLNVFPIHIPPLRQRPQDIEILLSHFLDRNSANYG QSLSVEPAARRVLLDYPWPGNVREMQNIMERLAIMSENGRITMETLPLFLHSAASPPP QAPSPALAIAASGRPKLWEMEKDQLLQALERNRWVQSRAAAELGITLRQMGHRVKKFG IDKLVKQRRSQLLGKS" misc_feature 713516..715027 /locus_tag="Deba_0625" /note="Nif-specific regulatory protein; Region: nifA; TIGR01817" /db_xref="CDD:162544" misc_feature 713570..713986 /locus_tag="Deba_0625" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 714092..714601 /locus_tag="Deba_0625" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 714173..714196 /locus_tag="Deba_0625" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(714176..714199,714386..714388,714512..714514) /locus_tag="Deba_0625" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 714374..714391 /locus_tag="Deba_0625" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 714569..714571 /locus_tag="Deba_0625" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 714893..715018 /locus_tag="Deba_0625" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(715130..716578) /locus_tag="Deba_0626" /db_xref="GeneID:9493074" CDS complement(715130..716578) /locus_tag="Deba_0626" /EC_number="5.3.3.3" /note="COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR006091:IPR013764:IPR004925; KEGG: cbe:Cbei_2100 vinylacetyl-CoA delta-isomerase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: vinylacetyl-CoA delta-isomerase; SPTR: A6LV87 vinylacetyl-CoA delta-isomerase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal" /codon_start=1 /transl_table=11 /product="vinylacetyl-CoA delta-isomerase" /protein_id="YP_003806592.1" /db_xref="GI:302342063" /db_xref="GeneID:9493074" /translation="MALKTGDEYIQSLKELDLKAHVMGQAAGGLTSHALVEPSMRAVA QTYDCAHDPQSKDLFRVISPLCNEEVNRFTHLHQSAQDLVNKVRMQRHCGNLTGCCFQ RCVGMDAANAVYSSTFDIDAATGSAYHQRFKEYWAWVQKNDLVVDGAMTDPKGDRGKR PKDQTDPDMYLRIKERRQDGVIISGAKLHQTGMLNSHEILIMPTISLRPGEEPWAVCC AVPTTAPGVRYIYGRQTSDTRKLESCRLDVGNPKFGGQEVLTVFEDVLVPWERVFMAG ETAFSGTLVERFASYHRQSYGGCKVGVGDLLIGAAALAAQMNGVAAASHIREKLVEMI HLNETLYSCGLACSAMGQPTASGNYLVDMLLANVCKLNVTRFPYELARLATDIGGGLL GTMPAAADLEDPVAGPYIRKYLKAADGVAVEDRFKVLRFIENLVAGAGSVAYLIESMH GAGPPTAQRIMIGRQGDLEGKMQKVKSLLDLA" misc_feature complement(715139..716578) /locus_tag="Deba_0626" /note="Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG2368" /db_xref="CDD:32515" misc_feature complement(716306..>716476) /locus_tag="Deba_0626" /note="Dynamin central region; Region: Dynamin_M; pfam01031" /db_xref="CDD:189811" misc_feature complement(<715724..>716098) /locus_tag="Deba_0626" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(715136..715741) /locus_tag="Deba_0626" /note="4-hydroxyphenylacetate 3-hydroxylase C terminal; Region: HpaB; pfam03241" /db_xref="CDD:146061" gene 717015..718361 /locus_tag="Deba_0627" /db_xref="GeneID:9493075" CDS 717015..718361 /locus_tag="Deba_0627" /note="COGs: COG0247 Fe-S oxidoreductase; InterProIPR017896:IPR012285:IPR009051:IPR004017:IPR 017900:IPR017969; KEGG: sfu:Sfum_2146 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A0LK76 Putative uncharacterized protein; PFAM: Cysteine-rich domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806593.1" /db_xref="GI:302342064" /db_xref="GeneID:9493075" /translation="MADVAKLTKLPPEVADRLKAFNLNYCLTCGTCSGGCPITGTPGM EGWDTRKVLRMLVYGMVQDVVDSKFPWLCTGCGRCAAACPMDIDIPYIMGYMKHLRAR DQVPGIIHKGCQNNIDTGNNMAIPKEDYLFNMADMGKELAADELPGFFVPVDRQDASI LFFPNSKEVFSDYEDMIWWWKIFYAAREKWTIPSENWEAVDWGLFTGNYEATKLFAQR KIDMMKQFNIQRMIMPDCGGGSYGCRVGMKNCALESPENKINSIYLFEYLKEIIEQGR IKLDKSVHAGKVFTWHDSCKHGRELERHFGHGYFEEPRWVIQQCVDEFVDMEPSRMNN YCCGAGGGMWPMPYEAESAWHGRKKYEQIKNSGANVVVVGCSNCHDQIMKRLPKFYTD YKYEVKYIWEVVADALVIDPYTEEEIAANMAEAAAQWERLGIEIEDEDDDWTPPEE" misc_feature 717081..718238 /locus_tag="Deba_0627" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" misc_feature 717981..718160 /locus_tag="Deba_0627" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene 718614..720374 /locus_tag="Deba_0628" /db_xref="GeneID:9493076" CDS 718614..720374 /locus_tag="Deba_0628" /note="InterPro IPR013830:IPR003006; KEGG: lhk:LHK_02194 probable oxidoreductase; SPTR: B4D6B2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806594.1" /db_xref="GI:302342065" /db_xref="GeneID:9493076" /translation="MLLTLAIFCLGPDNRAVAVDGLRGGSGVDVTLAPGQGLELAFVH DEPLDGQWLLVALTQQDGQARSLRLADAAQATVKPWKIEGKRAFFLCPQGLAGPLWLK NAGPQAIELAKYQARNYRGRNSHFPRVTILLPGHDQRGSQWAWWRIPLLAALALIMGL AAASAPGRWPRRLALAPPAAACLAAALMPLAGGRLLLAYDAYLLLAGLGAGLAVAARL PRWAGLAWPLAVRFGRWARAWRPWANWRLPQGLMLALVLAIVFAPAALLPNPGVKVPF DRQWLDELNQKRPYVVAIGNSMTGSRIDAPRLSQLLGGRPVELKWYAGTSQRLWYLMF RYYVCQARHKPKYVIMMFGDYDMPWIRRGFVNEWDRRQIESMTPDSMDFDPLFKQRCL DDPSPREALHMALRRWLGVSNYSFELTEWLADAAMRLTVPPPWVDAYPMELRAVHWRR AVNGRFDLGHLRPGVFNPPPPGPKPDANLAATALRGKSFLPEIARLAKENGVQLILLH FQHRRFNAFHGQRQPDDVSKVVAAVADFCKKNGILYHDFLYDPNITEDLYSAGDHIGY DHRRTRWTENMFKRIGHFFK" misc_feature <720066..>720272 /locus_tag="Deba_0628" /note="Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a...; Region: Pterin_binding; cl00219" /db_xref="CDD:197403" gene 720371..721792 /locus_tag="Deba_0629" /db_xref="GeneID:9493077" CDS 720371..721792 /locus_tag="Deba_0629" /note="COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299:IPR020726; KEGG: pdi:BDI_1486 alginate O-acetylation protein, alginate O-acetyltransferase; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: B4D6B3 Membrane bound O-acyl transferase MBOAT family protein; PFAM: MBOAT family" /codon_start=1 /transl_table=11 /product="membrane bound O-acyl transferase MBOAT family protein" /protein_id="YP_003806595.1" /db_xref="GI:302342066" /db_xref="GeneID:9493077" /translation="MTFNSLDFLAFFAIVLTVYWLLPHRGQNVFLLVASYFFYGYVHP WFLALILAATGVNYLAALAIERWRWRGKLILTADLVVSLGVLGVYKYLDFFIDNVAAL LSLAGLPTAETTLQIFLPVGISFYTFQVIGYTIDVYRGKLQARRDFLDFALFVSFFPQ LVAGPIERAAHLLPQVEQKRSFSVENLYSGLLLMIWGFFQKLVVADNVAPIADKAFAI QDPTFYLLWTGALAFTVQILADFSAYTDIARGAARMMGFRLVNNFDNPYFSRSIGDFW RRWHMSLSYWFRDYVYIPLGGNRHGPWRGARNILITFLLSGLWHGASWNFVLWGGYHG LLVLAERLYKTYVPALPARLGRLLLPLKVAATFVLIVFGWMLFRESNGLEWIATHLAL RPAAGPPEDVEIAQYLLALVGVYSLPLWLKAAYAWLEAKLGSGGGPGQMAMLTRACLA SALFMGILIFRGQDSATFIYFQF" misc_feature 720374..721546 /locus_tag="Deba_0629" /note="MBOAT family; Region: MBOAT; cl00738" /db_xref="CDD:193921" gene complement(721789..725073) /locus_tag="Deba_0630" /db_xref="GeneID:9493078" CDS complement(721789..725073) /locus_tag="Deba_0630" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR003018:IPR003661:IPR003594:IPR 001789:IPR005467:IPR011006:IPR009082:IPR004358:IPR013656:I PR013767; KEGG: sfu:Sfum_3740 PAS/PAC sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; GAF domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; response regulator receiver; SPTR: A0LPQ8 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003806596.1" /db_xref="GI:302342067" /db_xref="GeneID:9493078" /translation="MAADRKDRAAPFVEPMSFGDFLSAFEAISLGDGAVVRTILAKSR VVRSFLENLPLGMALLDHHPRYILANQAMADFNGRSLADHPGLGVGQCPPCGSRLAAE FVRQALGQGLAIHDCRFDGPDDQPPERRRQYQASIFPIFTRDGGIDGVGILAADVTIE RRALADLRRSEEKHARVFAEATDGLALVDRQSGVVIDCNQALAKLVGRPRAEIIGRHQ RLLHPPEDWQDDFSLSFPRLGRPPSRGPVLLRLQLADGRIGQAEVRSSVFELDGRQVA LGAFRDISDRLAAQKATNFNEMRLEALFRLSQMTQATEQEIYDFVVDEGVRLTESQYG YLYLLDENETAFARRVWSETALRDCQIFDAQTFGPQPIAQSGICAEAVRQRRPVVIND HAAHPLKRGAPPGHLPLRRHIHVPVIDQGRIAAVAGMANKDQDYSHADVLQLQLLMNG MMAIVHQRRAEAALRESRRAFKNLVENLADVICRWDNKGRLVYLSPAAAPHLGADLQR RLGKTMAELTCNSDVGLHWQEQIDRVLRLGQPAEGEIELDLEAGPRIFNWRLFPQRGA TGQVEAVVSIARDITKLRLSERNYRMIFDGMLDGFALHRIVCDQGGRPVDYVFLDVNP AFEGMTGLRAADILGKSLRQIMPQAEDHWVETYGQVALTGRPARFESYAAALDKHFEV VAFRPRPGQFACIFQDVTERRRAQEQQAKLERQLRQAQKMEAIGALAGGIAHDFNNIL SAMNGYAELALEDLPAGHSSRQCLEQVLRAGARAKGLIRQILGFSRPSDETRRPLRLA TVLEEVLTLLRSSLPATIEIIQRVEAADELVMADPTQMHQVLLNLCTNAAQAMEGQRG VLELGLEAVELGLGQRLPAGRWLRLSVRDSGRGMDQATLARIFEPFFTSRKAEGGTGM GLAVAHGIVTSHGGAIEARSRPGQGSLFEIYLPALAEAAPEPPDEAAQRAAPSGGEAV LFVDDERPLVDVGKRMLERLGYRVTATQSADEALRLFSADPAAFDLLITDYTMPEITG AELAQRAMALRPDLPVILCTGYSGQISEADALNMGIRRYLLKPVTAGQLSAAIRQALG QPPAEA" misc_feature complement(724588..724926) /locus_tag="Deba_0630" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(724198..724566) /locus_tag="Deba_0630" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(<724399..724560) /locus_tag="Deba_0630" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(723703..724185) /locus_tag="Deba_0630" /note="FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203" /db_xref="CDD:32385" misc_feature complement(723733..724131) /locus_tag="Deba_0630" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature complement(<723523..723663) /locus_tag="Deba_0630" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(723322..723651) /locus_tag="Deba_0630" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(<723124..723312) /locus_tag="Deba_0630" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(722236..723258) /locus_tag="Deba_0630" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature complement(722716..722910) /locus_tag="Deba_0630" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(722731..722733,722743..722745, 722752..722754,722764..722766,722773..722775, 722785..722787,722836..722838,722845..722847, 722857..722859,722866..722868,722878..722880, 722890..722892)) /locus_tag="Deba_0630" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(722872..722874) /locus_tag="Deba_0630" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(722236..722568) /locus_tag="Deba_0630" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(722248..722250,722254..722259, 722272..722274,722278..722280,722326..722337, 722404..722409,722413..722415,722419..722421, 722425..722427,722527..722529,722536..722538, 722548..722550)) /locus_tag="Deba_0630" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(722536..722538) /locus_tag="Deba_0630" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(722329..722331,722335..722337, 722407..722409,722413..722415)) /locus_tag="Deba_0630" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(721822..722160) /locus_tag="Deba_0630" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(721813..722157) /locus_tag="Deba_0630" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(721855..721860,721867..721869, 721924..721926,721984..721986,722008..722010, 722143..722148)) /locus_tag="Deba_0630" /note="active site" /db_xref="CDD:29071" misc_feature complement(722008..722010) /locus_tag="Deba_0630" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(721984..721992,721996..722001)) /locus_tag="Deba_0630" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(721852..721860) /locus_tag="Deba_0630" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(725202..726485) /locus_tag="Deba_0631" /db_xref="GeneID:9493079" CDS complement(725202..726485) /locus_tag="Deba_0631" /note="COGs: COG2200 FOG: EAL domain; InterPro IPR001633; KEGG: pth:PTH_0666 signaling protein; PFAM: EAL domain protein; SMART: EAL domain protein; SPTR: A5D4I7 Hypothetical signaling protein; PFAM: EAL domain" /codon_start=1 /transl_table=11 /product="diguanylate phosphodiesterase" /protein_id="YP_003806597.1" /db_xref="GI:302342068" /db_xref="GeneID:9493079" /translation="MNGQAPQQQRPQPRPTPGLSPADVAAIIERELVRSHYQPVVSMM AQAVIGYEALARASHPFTGQPVPPPELFRAARACGLLLELDRLCRRKALEGFRALPRR RRDQVVSINFEASLLDQGVAGSNHLLRAVEAAGLDPATVAIEIIESKVRDMDSLQRFV ETYRAHGFVLALDDVGSGHSNLERIALLKPDVIKIDRSLVQDLDRHFYKQQVVRALVA LGHSIGALVLAEGVERQEEAIAALDMGVNLLQGYLLGRPSEDGGAANGASRGEIGELA ACLRQHAMANAVRSKEWGRRLEQVESSLLAMVSGVALADIEARLREMIRVHPWLECVY VLDENGRQVSETVCAPHKINYRGQVLYRPAPKGADQSLKRYYLLLGAGLERYVSTPYI SMASGNRCVTVSSWFHAADGRRFILCADFDAETLE" misc_feature complement(725715..726422) /locus_tag="Deba_0631" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(726703..727515) /locus_tag="Deba_0632" /db_xref="GeneID:9493080" CDS complement(726703..727515) /locus_tag="Deba_0632" /EC_number="4.2.1.20" /note="COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR002028:IPR013785:IPR011060; KEGG: pla:Plav_0142 tryptophan synthase, subunit alpha; PFAM: tryptophan synthase alpha chain; PRIAM: Tryptophan synthase; SPTR: A7HPD2 Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, subunit alpha; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, subunit alpha" /codon_start=1 /transl_table=11 /product="tryptophan synthase, subunit alpha" /protein_id="YP_003806598.1" /db_xref="GI:302342069" /db_xref="GeneID:9493080" /translation="MSRTIAQAFARAKQEKRAAFIPFVTGGLPDAQGFARLLLGLEQA GADIIEVGLPFSDPMTDGPVIQESSQLALDRGVTPGSLLAALAELSPKLQTPIVIMSY YNPILHMGLEEFARRAAQSGARGLIIPDLPPEEAKPWDAAANAADLDTIFLATPTTDD QRLPLVLAQCRGFLYYVSMTGVTGAALEVGGPLLERLAQVRAASPLPVAVGFGVGTPE QAAALARHADGVIVGSAIVRRMLAAADAAAGVDAALDLAGQLARAIAQAGAA" misc_feature complement(726796..727461) /locus_tag="Deba_0632" /note="Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are...; Region: Tryptophan_synthase_alpha; cd04724" /db_xref="CDD:73386" misc_feature complement(order(726814..726819,726877..726882, 726964..726969,726991..726993,727321..727323, 727333..727335,727366..727368)) /locus_tag="Deba_0632" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73386" misc_feature complement(order(726967..726969,727210..727212, 727333..727335,727366..727368)) /locus_tag="Deba_0632" /note="active site" /db_xref="CDD:73386" misc_feature complement(order(727210..727212,727333..727335, 727366..727368)) /locus_tag="Deba_0632" /note="catalytic residues [active]" /db_xref="CDD:73386" misc_feature complement(order(727030..727032,727039..727047, 727051..727053,727111..727113,727120..727122, 727126..727131,727195..727197,727204..727206, 727315..727320,727327..727329,727336..727338, 727342..727353)) /locus_tag="Deba_0632" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:73386" gene complement(727518..728744) /locus_tag="Deba_0633" /db_xref="GeneID:9493081" CDS complement(727518..728744) /locus_tag="Deba_0633" /EC_number="4.2.1.20" /note="COGs: COG0133 Tryptophan synthase beta chain; InterPro IPR006654:IPR001926:IPR006653; KEGG: ttr:Tter_1249 tryptophan synthase, subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; SPTR: D1CBJ2 Tryptophan synthase, subunit beta; TIGRFAM: tryptophan synthase, subunit beta; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, subunit beta" /codon_start=1 /transl_table=11 /product="tryptophan synthase, subunit beta" /protein_id="YP_003806599.1" /db_xref="GI:302342070" /db_xref="GeneID:9493081" /translation="MPNLQDSSKTPAPRSELPDAQGRFGRFGGRFVPETLMPAIHELE AAYAAAKVDPTFQAELDQLLQDYVGRQTPLYEAKRLSAHYGGARIFLKREDLAHTGSH KINNALGQALLARRMGKMRIVAETGAGQHGVATATACALLGMECVVCMGEVDIERQAL NVTRMKLLGASVKPVSCGARTLKDAVSDAMRYWVTNLADTHYIIGSVVGPHPYPAMAR DFQAVIGRETRAQIVEKTGKLPDVLLACVGGGSNAMGMFHPFIDEPGVRKIGVEAGGL GLDSGKHSACLGAGHDGVLHGALIRLLQDAWGQVLEAHSIAAGLDYPGTGPEHCHFQA AGLAEYASVTDQEALEAFKLLSRLEGIIPALESSHALAHLKHVAPRMPQDSIIVVCLS GRGDKDGSQTAALIEE" misc_feature complement(727551..728729) /locus_tag="Deba_0633" /note="tryptophan synthase, beta chain; Region: PLN02618" /db_xref="CDD:178227" misc_feature complement(727551..728633) /locus_tag="Deba_0633" /note="Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446" /db_xref="CDD:107207" misc_feature complement(order(727569..727571,727647..727649, 727989..728003,728127..728129,728355..728357, 728436..728441)) /locus_tag="Deba_0633" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107207" misc_feature complement(728436..728438) /locus_tag="Deba_0633" /note="catalytic residue [active]" /db_xref="CDD:107207" gene complement(728698..729315) /locus_tag="Deba_0634" /db_xref="GeneID:9493082" CDS complement(728698..729315) /locus_tag="Deba_0634" /note="COGs: COG0135 phosphoribosylanthranilate isomerase; InterPro IPR013785:IPR011060:IPR001240; KEGG: gme:Gmet_2492 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: Q39SQ9 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase" /codon_start=1 /transl_table=11 /product="N-(5'phosphoribosyl)anthranilate isomerase (PRAI)" /protein_id="YP_003806600.1" /db_xref="GI:302342071" /db_xref="GeneID:9493082" /translation="MSTRVKICGLTSLEDAMAAVAAGADALGFVLADSPRQLRPDQVR HIVAQLPPLVVTVGVFVNAAVAEVQNVRDFCGLDMVQLHGPANQAADRLLGGPRRVIR VVSVGLDQAPDPAAHPEAAMLLDAKVQGLAGGTGKTFDWPLALAVAQSRPIILAGGLN PDNVRLAIQTVKPFAVDVSSGVEAQPGRKDHAKLARFIQNARAAL" misc_feature complement(728713..729303) /locus_tag="Deba_0634" /note="Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric...; Region: PRAI; cd00405" /db_xref="CDD:73365" misc_feature complement(order(728776..728781,728785..728787, 728941..728943,729067..729069,729073..729075, 729226..729228,729292..729294,729298..729300)) /locus_tag="Deba_0634" /note="active site" /db_xref="CDD:73365" gene complement(729312..730109) /locus_tag="Deba_0635" /db_xref="GeneID:9493083" CDS complement(729312..730109) /locus_tag="Deba_0635" /EC_number="4.1.1.48" /note="COGs: COG0134 indole-3-glycerol phosphate synthase; InterPro IPR013785:IPR011060:IPR013798:IPR001468; KEGG: afw:Anae109_0373 indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase; PRIAM: indole-3-glycerol-phosphate synthase; SPTR: A7H792 indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase" /codon_start=1 /transl_table=11 /product="indole-3-glycerol-phosphate synthase" /protein_id="YP_003806601.1" /db_xref="GI:302342072" /db_xref="GeneID:9493083" /translation="MSDFLARMLAVKAQEVRALHARPDVAELRAQALAMAPGRDFLAA LRARPGAAIIAEVKKASPSLGDINPAADPAAQARLYAAGGAAACSVLCDASYFKGSLA DLAAVRAAVDLPLLAKDFHIDELQLAAARLAGADAALLIAAALSPQRLAALYAEALAL GLTPLVEVHAAEELPAALALDPPLIGVNNRNLDTLKVDVQTAARLRPMIPAHVLTVAE SGVSGPADVARLRAAGLDAFLVGGALMAAADPLAACAALRQAAEAAR" misc_feature complement(729387..729989) /locus_tag="Deba_0635" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature complement(order(729387..729389,729450..729455)) /locus_tag="Deba_0635" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73384" gene complement(730111..731148) /locus_tag="Deba_0636" /db_xref="GeneID:9493084" CDS complement(730111..731148) /locus_tag="Deba_0636" /EC_number="2.4.2.18" /note="COGs: COG0547 anthranilate phosphoribosyltransferase; InterPro IPR005940:IPR020072:IPR000312:IPR017459; KEGG: mta:Moth_1340 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like; SPTR: C8R139 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family, a/b domain; glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="anthranilate phosphoribosyltransferase" /protein_id="YP_003806602.1" /db_xref="GI:302342073" /db_xref="GeneID:9493084" /translation="MIKTAIAKAMAGQNLSEDEMTQAMDQVMEGRATPAQIGAFLVAL RIKGETVEEIAAAAQVMRRKATAVPSQAAAQGRPLVDTCGTGGDGAGTFNVSTTAAFV VAGAGCKVAKHGNRAVSSSCGSADLMERLGVNLDLSAEQVGVCLDEVGIGFLFAPALH GAMKHAIGPRRELGLRTIFNVLGPLTNPAGATAQVMGVFDPALTTPLAHVLGRLGCQS AYVVHGQGGYDEITITGPSNLAHLCEGRVKELTLRPEDLGLTAASAEAITARDAAHSQ SISLGVLQGQSGPARDMVLLNAAAALAAAGAADGLADGLALAAKSIDEGAALAKMEQL VAFTAQTGKAA" misc_feature complement(730129..731148) /locus_tag="Deba_0636" /note="anthranilate phosphoribosyltransferase; Provisional; Region: trpD; PRK00188" /db_xref="CDD:178920" misc_feature complement(730951..731148) /locus_tag="Deba_0636" /note="Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885" /db_xref="CDD:145834" misc_feature complement(730267..730872) /locus_tag="Deba_0636" /note="Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591" /db_xref="CDD:144256" gene 731632..732255 /locus_tag="Deba_0637" /db_xref="GeneID:9493085" CDS 731632..732255 /locus_tag="Deba_0637" /note="InterPro IPR001647:IPR012287:IPR009057; KEGG: dal:Dalk_3086 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FBM3 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003806603.1" /db_xref="GI:302342074" /db_xref="GeneID:9493085" /translation="MSDTKNTLEKLRQEEREARRNLILDAAVRLFSSMPFRQVGMRDI AAEAGMSAASLYRYFADRDDLFIEAFMRESQMIAAEFDRYMADNHNLGDPLVGVAKVL AHYLIDNESFFRMMTYFMVGAQIKPEALERFNQTERHLLNVFEDAFKSAGVTENLRLL SHAMFAAINGIVITFRNYPGRDLDEARRHILRLSDLAAETFRLWAKK" misc_feature 731665..732237 /locus_tag="Deba_0637" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 731698..731838 /locus_tag="Deba_0637" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(732265..734871) /locus_tag="Deba_0638" /db_xref="GeneID:9493086" CDS complement(732265..734871) /locus_tag="Deba_0638" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000700:IPR003660:IPR011006:IPR009082:I PR004358:IPR004010:IPR013767; KEGG: drt:Dret_0936 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; Cache domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: C0GLG7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Cache domain; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003806604.1" /db_xref="GI:302342075" /db_xref="GeneID:9493086" /translation="MAKRLRLSHLLLLFIILIGFAPLVLMGFLGHRTTQAMRDDIAYR NLALAQSLAGQVDSLLIRARDQLLELQGNIAHGGLVSAGQIDRYLSSKLTHHPELFNM IMVLDANGLVTNLAPYHFDLLGIDWSNHAAFQQGSAERRPVWSSTFISPRTGSPTMTM SLPLDDGVLVGYLNLAKLSHIAAQIDLGPGGYAAVVDQKGTAIAHTDPTFVDEQRNLK DLSIFSEAVAGHKGVFSFEQNGRPMLGSVALAPLTGWPVVVAQPEDKAFAPVREMSNL TLGSMMIVVLLATMIGLWSIWLVQRPISWLAANAARVAGGDDNFTPPAGKFREFDDLT ASFTAMARAIHSREEALRASEEHLRAIVQGSADAIVTMDIQRNITDCNRAFLEQFGFD AQEVIGQSVAMIHSSQASYQTFGAKVYPQVLRDGSWRGEWSFVRKDGEPAPMETAIST LLSPTGKVAGYVALMRDISRRLRDEAERARLEVQLRHSQKMEAIGTLAGGVAHDFNNI LQALHGYVQIMTASAGLGEVDRQRLSQMDQALERASSLVRQLLTFSRKVDAELGPVDL NFEVRQSVALLERTIPKMIAIRLDLEPEPRTISANPIQLEQIILNLAANSRDSMPEGG TLTIRTRNLCLEHEKTVSDLALEPGDYMTLCVADTGHGMPPEVIQHIFEPFFTTKGIG GGTGLGLATVYGIVRGHHGAIECQSSPGLGTAITIYFPAAPPTAKAVSPSGPDNAPPP RGNETILLVDDEDSVAEVAQAILEDHGYAVLRAASGEQALELYAARGHFIDLVLLDLG MPGMGGRRALERLLALDQAAKVIIASGYAALDEKAVTIDKGALAYIQKPFRLVEMLRT IRRALDGQDRAV" misc_feature complement(734224..734442) /locus_tag="Deba_0638" /note="Cache domain; Region: Cache_1; pfam02743" /db_xref="CDD:145738" misc_feature complement(733834..734040) /locus_tag="Deba_0638" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(732715..733800) /locus_tag="Deba_0638" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature complement(733468..733779) /locus_tag="Deba_0638" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(733555..733557,733570..733572, 733651..733662,733699..733701,733717..733719, 733729..733731)) /locus_tag="Deba_0638" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(733528..733530,733534..733536, 733618..733623,733630..733632,733657..733659, 733669..733671)) /locus_tag="Deba_0638" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(733207..733401) /locus_tag="Deba_0638" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(733222..733224,733234..733236, 733243..733245,733255..733257,733264..733266, 733276..733278,733327..733329,733336..733338, 733348..733350,733357..733359,733369..733371, 733381..733383)) /locus_tag="Deba_0638" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(733363..733365) /locus_tag="Deba_0638" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(732715..733059) /locus_tag="Deba_0638" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(732727..732729,732733..732738, 732751..732753,732757..732759,732805..732816, 732883..732888,732892..732894,732898..732900, 732904..732906,733018..733020,733027..733029, 733039..733041)) /locus_tag="Deba_0638" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(733027..733029) /locus_tag="Deba_0638" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(732808..732810,732814..732816, 732886..732888,732892..732894)) /locus_tag="Deba_0638" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(732298..732636) /locus_tag="Deba_0638" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(732289..732633) /locus_tag="Deba_0638" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(732331..732336,732343..732345, 732400..732402,732460..732462,732484..732486, 732619..732624)) /locus_tag="Deba_0638" /note="active site" /db_xref="CDD:29071" misc_feature complement(732484..732486) /locus_tag="Deba_0638" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(732460..732468,732472..732477)) /locus_tag="Deba_0638" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(732328..732336) /locus_tag="Deba_0638" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(735037..736206) /locus_tag="Deba_0639" /db_xref="GeneID:9493087" CDS complement(735037..736206) /locus_tag="Deba_0639" /note="COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: geo:Geob_3442 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: B9M5M6 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_003806605.1" /db_xref="GI:302342076" /db_xref="GeneID:9493087" /translation="MKANCASSGGVERLWRLVALWLTLCLLPACGEAPEPIKIGYCGT LTGRGADAGVVGRDAVILAVEQINARGGVAGRRLELLARNDGGDEETARVMDQELLDA GVAAVIGHMTSDMTVPAVATFNQRRVPLISPTVSLNALVGKDDYLWRMRPANAQLAKI LAAYARDVLGLKRLVAIVDLANAAYTRDWMESFYREFTKGGGQMVERIEIEGALGGYA MAAARKALAAKPDGLTMAANALDAAFICQQVRKMGFKGPIMLAGWALSPALAQQGGAS VEGVITSELACLPEAQPRLKRFEADFHGRFGYQPSLTGVHSHNAVQFLALGLEASLSR KLSLKQGLQSVGLINGLLGPITMDRYGDPTAALQLQVVRDGQLAPLVPAPPAGRD" misc_feature complement(735115..736116) /locus_tag="Deba_0639" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(735232..736095) /locus_tag="Deba_0639" /note="Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily; Region: PBP1_ABC_transporter_LIVBP_like; cd06268" /db_xref="CDD:107263" misc_feature complement(735802..735807) /locus_tag="Deba_0639" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107263" gene complement(736172..737323) /locus_tag="Deba_0640" /db_xref="GeneID:9493088" CDS complement(736172..737323) /locus_tag="Deba_0640" /note="COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: app:CAP2UW1_2211 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: C7RP21 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_003806606.1" /db_xref="GI:302342077" /db_xref="GeneID:9493088" /translation="MKTTSTRIPRAGLVLALAGLIVMLAAATAACRRGEELIIGFCGC LVGKTADLGVPARDAVTMAVEQRNRRGGVAGRPVRLLVANDQQSPETAVRADQGLIDA GAVAIIGHMTSDLTTAALPLINRRRVVLLSPTAAASTLAGRDDYFFRLRQGNSGETDA VAHYAALVAGVRQVVVAVEWINRQYTFDWAERFDEAFIRHGGQKISRHVFSSNPRPDY RIIIKDIMAQKPQAVAIAADAADAAMLCQQLRKHGFVGMIILAGWAMTPLLVQHGGMA VEGVVAALPHVDDANNAKWRAFVEGFVARFGYEPNFAAMHAFDAAQLLFAAAEKAARR GGGLKEALNDIRRLDGLQGPIELDRYGDASGRFWLETIREGKLRVIRRG" misc_feature complement(736238..737242) /locus_tag="Deba_0640" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(736376..737209) /locus_tag="Deba_0640" /note="Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily; Region: PBP1_ABC_transporter_LIVBP_like; cd06268" /db_xref="CDD:107263" misc_feature complement(736919..736924) /locus_tag="Deba_0640" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107263" gene complement(737581..737772) /locus_tag="Deba_0641" /db_xref="GeneID:9493089" CDS complement(737581..737772) /locus_tag="Deba_0641" /note="KEGG: dma:DMR_44390 hypothetical protein; SPTR: C9PZP5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806607.1" /db_xref="GI:302342078" /db_xref="GeneID:9493089" /translation="MRTMWQTIVVVVVVAVAVFMVARRLWNESREGSCGGCEGCQAPP AARGHAPDDAACRGCDKKH" gene complement(737769..739910) /locus_tag="Deba_0642" /db_xref="GeneID:9493090" CDS complement(737769..739910) /locus_tag="Deba_0642" /note="COGs: COG0370 Fe2+ transport system protein B; InterProIPR005225:IPR003373:IPR006073:IPR002917:IPR 011619:IPR011642:IPR011640; KEGG: dal:Dalk_4622 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: B8FNL9 Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein B" /protein_id="YP_003806608.1" /db_xref="GI:302342079" /db_xref="GeneID:9493090" /translation="MAGGKIVVALAGNPNAGKTSLFNALTGARQHVGNYPGITVEKKS GQAQREGQLFEIVDLPGTYSLSAYSLEEVVARNFIIQDRPDVVVAVVDASNLERNLYL AVQIMELGAPLVVALNMMDLAESRGLKIDAQRLTDLLGAPVAPLVARTGKGLDGLLRA VAQVAAQGAPWRPLEISYGPDVDEAIVRMSACIAAHGAGAGQGLSPRWLAVKLLERDA EVQKLVGQTPGLAQRLEAIREGVARHIQATLDDDVEGVIADYRYGFIGSIYRQCVTEP RVQRLEMSDQIDKVLLNRLFGPLFLLFVLYAVYQFVFWASETPVAWLEAGFGWLGDMV AAHAPPGVLREMLISGVIDGVGGVMGFVPLIMLMFLAVAFLEDSGYLARAAFLLDRVL RAFGLHGNSVIALIVGGGITGGCAVPGVMATRTLADPKARLATILTVPLMNCGAKLPV YAVLTAAFFGQRQAAVMFGLTIVSWCLALLAARLLRWTILRGRSAPFVMELPPYRLPT ARGLLIHTWERTWQYIKKAGTVILGISIIMWALMTYPGLPDDQAAAWRARIDAAPSQE TGEQLAGQMAQAALANSAAGRMGRGLDAIMAPLGFDWRVNVALVGGFAAKEVIVSTLG TAYSLGQVEADEPLGLAQRLAAEPGWSPLTALTLMIFVMVYAPCLVTVAVIKKETASW RWALFGLAYTTALAYLLALAVHQGGLALGLG" misc_feature complement(737778..739898) /locus_tag="Deba_0642" /note="Fe2+ transport system protein B [Inorganic ion transport and metabolism]; Region: FeoB; COG0370" /db_xref="CDD:30719" misc_feature complement(739410..739883) /locus_tag="Deba_0642" /note="Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this...; Region: FeoB; cd01879" /db_xref="CDD:133280" misc_feature complement(739854..739877) /locus_tag="Deba_0642" /note="G1 box; other site" /db_xref="CDD:133280" misc_feature complement(order(739464..739472,739548..739550, 739554..739559,739851..739862,739866..739868)) /locus_tag="Deba_0642" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133280" misc_feature complement(739785..739799) /locus_tag="Deba_0642" /note="Switch I region; other site" /db_xref="CDD:133280" misc_feature complement(739794..739796) /locus_tag="Deba_0642" /note="G2 box; other site" /db_xref="CDD:133280" misc_feature complement(739728..739739) /locus_tag="Deba_0642" /note="G3 box; other site" /db_xref="CDD:133280" misc_feature complement(order(739659..739664,739674..739730)) /locus_tag="Deba_0642" /note="Switch II region; other site" /db_xref="CDD:133280" misc_feature complement(739548..739559) /locus_tag="Deba_0642" /note="G4 box; other site" /db_xref="CDD:133280" misc_feature complement(739464..739472) /locus_tag="Deba_0642" /note="G5 box; other site" /db_xref="CDD:133280" misc_feature complement(738537..738839) /locus_tag="Deba_0642" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" misc_feature complement(738354..738515) /locus_tag="Deba_0642" /note="Ferrous iron transport protein B C terminus; Region: FeoB_C; pfam07664" /db_xref="CDD:191804" misc_feature complement(737865..>738152) /locus_tag="Deba_0642" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" gene complement(739910..740155) /locus_tag="Deba_0643" /db_xref="GeneID:9493091" CDS complement(739910..740155) /locus_tag="Deba_0643" /note="COGs: COG1918 Fe2+ transport system protein A; InterPro IPR008988:IPR007167; KEGG: drt:Dret_0317 FeoA family protein; PFAM: FeoA family protein; SPTR: C8WZZ4 FeoA family protein; PFAM: FeoA domain" /codon_start=1 /transl_table=11 /product="FeoA family protein" /protein_id="YP_003806609.1" /db_xref="GI:302342080" /db_xref="GeneID:9493091" /translation="MNDNPTLRTLAQGQWAVVTKLTAKGELGRRLRDMGLAPGARLQM MCRAPLKDPVEIKLRGYNLTLRNNEADHVFVQPEEQA" misc_feature complement(739925..740140) /locus_tag="Deba_0643" /note="FeoA domain; Region: FeoA; cl00838" /db_xref="CDD:193951" gene 740590..741606 /locus_tag="Deba_0644" /db_xref="GeneID:9493092" CDS 740590..741606 /locus_tag="Deba_0644" /note="COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: dsa:Desal_2695 TRAP dicarboxylate transporter-DctP subunit; PFAM: extracellular solute-binding protein, family 7; SPTR: C6BZB2 TRAP dicarboxylate transporter-DctP subunit; PFAM: Bacterial extracellular solute-binding protein, family 7" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein, family 7" /protein_id="YP_003806610.1" /db_xref="GI:302342081" /db_xref="GeneID:9493092" /translation="MLKRLAVFVAALMLAGACGVAQAQQTLTYSNFFPPTHAQSVLAQ QWCDEVAKRTDGKLRVQYFPGQTLTKAPQAFEGVTAGLSDIAMGCFSYTRGRFPVMEV VDLPLGYQNGQAATAVINEVYAQLKPKELDGVEVLYLHAHGPGLLFTKDKPVAKLEDM KGLKIRSHGSSARLVQALGGTPVTMAMPESYQALSRGTVDGSVHPTESNLGWKLGEVV SYRTASFPVAYTTGFFVVMNKAKWDALPEDVKATVRQVNQEWIAKSAAAWDKADEAGL EYFLSLPGRKDIALDAAESARWAAAAKPVLDEYAKAMDERGFDGKAIVSAAQAALAKH NAAK" misc_feature 740590..741432 /locus_tag="Deba_0644" /note="Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl00710" /db_xref="CDD:153950" gene 741621..742100 /locus_tag="Deba_0645" /db_xref="GeneID:9493093" CDS 741621..742100 /locus_tag="Deba_0645" /note="KEGG: dol:Dole_2002 tripartite ATP-independent periplasmic transporter DctQ; SPTR: A8ZTC3 Tripartite ATP-independent periplasmic transporter DctQ component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component" /codon_start=1 /transl_table=11 /product="tripartite ATP-independent periplasmic transporter DctQ" /protein_id="YP_003806611.1" /db_xref="GI:302342082" /db_xref="GeneID:9493093" /translation="MLERLTSLVSRLFSIAAGAALVLMMALTCLDAILRDINMPLVGI NESVTYLGALVLGFSLPMTQRRGGQVGVELLSRKLTGRPAEALAVLVSLVSLILCAVT AWQCWAYAGELKASGEVSMNLGLPVHLVTQAIAVSFGALCLVILNQMVAAIGRLAAK" misc_feature 741702..742079 /locus_tag="Deba_0645" /note="Tripartite ATP-independent periplasmic transporters, DctQ component; Region: DctQ; cl01181" /db_xref="CDD:194064" gene 742097..743419 /locus_tag="Deba_0646" /db_xref="GeneID:9493094" CDS 742097..743419 /locus_tag="Deba_0646" /note="COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR004681:IPR010656; KEGG: dat:HRM2_35000 TRAP-type C4-dicarboxylate transport system, large permease component; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C0Q966 TRAP-type C4-dicarboxylate transport system, large permease component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter, DctM subunit" /protein_id="YP_003806612.1" /db_xref="GI:302342083" /db_xref="GeneID:9493094" /translation="MSPDVVGLVGIILMLMIFLTGMPVTYVMALVGWLGFSYIVSPEA GLQLLARDMVGTFQSSTLVVVPLFTLMGQFALQAGVSKRLYEVAHRFTGAMPGGLAMA TVLACTGFGAVCGSSTATAATMATVGLPEMSRRNYSPALATGAVASGGSLGMLMPPSV VLIVYGVLTEASIGRLFVAGIIPALLIAHLFIVAIAVVCWLRPKACPVGESYSWADKF AALREVGEVILVFLLVLGGLVRGWFTEIEAGGVGAMLMLMVGLARRQMTWLAFRKALN DTLWTSCMTMMLVAGAVVFGHFLTITRIPFAVAELVAGLDWPAWAVIVAIGAVYLIGG CIIDALALVMLTVPIFLPIVTGLGFDTIWFGVIIVLLTQMGVITPPVGINVYVVQGIA RDVKLEAIFKGSMPFLVALIVGMLILVTFPLIATWLPDQVYQHLAVGR" misc_feature 742127..743368 /locus_tag="Deba_0646" /note="DctM-like transporters; Region: DctM; pfam06808" /db_xref="CDD:148424" misc_feature 742253..743386 /locus_tag="Deba_0646" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(743526..743816) /locus_tag="Deba_0647" /db_xref="GeneID:9493095" CDS complement(743526..743816) /locus_tag="Deba_0647" /note="KEGG: sfu:Sfum_2838 hypothetical protein; SPTR: A0LM64 Conserved hypothetical cytosolic protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806613.1" /db_xref="GI:302342084" /db_xref="GeneID:9493095" /translation="MKAGVIFTGTGPILILTSYGSLSEPKFVEKLQAKGIMKFIAYEL DVDEVRRKYGKKFDYIMGDVLQEDDLRVLDYNGHNVFYNFSFGNLGQPVIVG" gene complement(743967..744848) /locus_tag="Deba_0648" /db_xref="GeneID:9493096" CDS complement(743967..744848) /locus_tag="Deba_0648" /note="KEGG: hypothetical protein; SPTR: C3XWY5 Putative uncharacterized protein (Fragment)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806614.1" /db_xref="GI:302342085" /db_xref="GeneID:9493096" /translation="MLGKSINYALMLCWLLAWPAQSALADGESRQALPNEREFYVRVL DCFAKAHPAGPEGWDLVDQTEVVAPDYMGVGAEEAPLMVAYQVSWQDTPRLEEAQAKV ISDGVEILKKQEDDQSSKQIQEQFEKLVAEMATAMEKGDYQRAQVLQRQAEEVSQRLD AVYAGREQELRGVEEAYAPHDAKLEIILTANSFSESFARPVKPIEAVEGLQAFRSEGE QDPHNGWQEGVTTIFIGDWRMIEEEGGVFMEAEPDAEAPYDAAQTVVVQVQADAKRAA EVVAAIDWAALKGLLAR" gene complement(745031..745603) /locus_tag="Deba_0649" /db_xref="GeneID:9493097" CDS complement(745031..745603) /locus_tag="Deba_0649" /note="KEGG: 3110006E14Rik; RIKEN cDNA 3110006E14 gene ; K10582 ubiquitin-conjugating enzyme E2 Q; SPTR: A7M8L6 Major ampullate spidroin 1 (Fragment)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806615.1" /db_xref="GI:302342086" /db_xref="GeneID:9493097" /translation="MKRAFVLLVVAAFVLCGGAALAQPGHGQGLAKPAAAARAKPKKP AMGKMAAMGQGGMMAMMMAHMKAAGGAAALVAGGEAMAGCGMMAGMAGGYKGPDLAQQ GLSQAQLARVRELAHAGLKKLMALHGQICALCLEAAYQMSAPTVDQEKLAQTMAEIGR LRAAAFMVGREYLAGLADTVGPEQAAWLGL" gene 745710..747446 /locus_tag="Deba_0650" /db_xref="GeneID:9493098" CDS 745710..747446 /locus_tag="Deba_0650" /note="COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR013704:IPR007197; KEGG: dvu:DVU2413 radical SAM domain-containing protein; PFAM: radical SAM domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q729D8 radical SAM domain protein; manually curated; PFAM: radical SAM superfamily; radical SAM N-terminal" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003806616.1" /db_xref="GI:302342087" /db_xref="GeneID:9493098" /translation="MKSLHDQTLAQPPFLPASRAEMDDLGWAELDVLLVSGDAHVDHP AFAMALLGRWLVAHGFRVGVAAQPDWRRPDSVTAMGRPRLLAGVGAGAVDSMLAHRTA FNLPRSDDAYTPGGKAGARPDRATIVYVNLVKQAFPGLPVVIGGIEASLRRVTHYDFW TDKLRRSILLDAKADALVYGMGELPLLAIARRLAQGDADEPVARRLLGAPGVAVMGRI EDLPPQAEVVILPSHEEIVAQPARLMEATLALERQAHQGWRWAAQAVGGRALLVAPPA RPLSTAELDMLHDLPFRRVAHPIHDQPVPGLATVATSIISHRGCGGGCSFCSLALHQG RAISSRSARSILAEAQELARLNNGRVAISDVGGPSANMWGGRCAGDRQSCARASCLTP KICPQFQVDQMAIIDLLTRLAATPGVGHVRVASGVRFDLALQQPAYARALVERFVGGQ LKLAPEHVSPGVLALMRKPGLDVFERFLRVFEQISRQAGKEQYVVPYFMSAFPGCGDA QMRELTQWLGQRHWRPQQVQCFEPTPGTVATAMFATGQDPQGRPIFVARDGAQRRRQH GLLTPRPGRRRG" misc_feature 745749..747419 /locus_tag="Deba_0650" /note="uncharacterized radical SAM protein YgiQ; Region: SAM_YgiQ; TIGR03904" /db_xref="CDD:188419" gene complement(747516..748154) /locus_tag="Deba_0651" /db_xref="GeneID:9493099" CDS complement(747516..748154) /locus_tag="Deba_0651" /note="KEGG: mxa:MXAN_4632 lipoprotein; SPTR: Q1D3H5 Putative lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806617.1" /db_xref="GI:302342088" /db_xref="GeneID:9493099" /translation="MSKARLALALCCLLTAALCGCQTAKKIGAEFDPAQRPEQQAYLA VIEPDLAQAQDHDGVAMVMNAAALPLNAAVRQAQIQRRVAAFDLGPKAQAQAQAEAAS ALAKFHDVILSLYVPEDKWNNLASSEPTFVVYLQTPDGRKISPLDRRRLTRRTAIDEA LYPFWGPWSKLYLMRFGLNDGDGKPLLAEGQNTVDLVISGAPGTLRLPLRLR" gene complement(748151..749470) /locus_tag="Deba_0652" /db_xref="GeneID:9493100" CDS complement(748151..749470) /locus_tag="Deba_0652" /EC_number="4.3.2.2" /note="COGs: COG0015 Adenylosuccinate lyase; InterProIPR004769:IPR008948:IPR000362:IPR003031:IPR 019468:IPR020557; KEGG: dal:Dalk_1188 adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; SPTR: B8F9E5 Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase" /codon_start=1 /transl_table=11 /product="adenylosuccinate lyase" /protein_id="YP_003806618.1" /db_xref="GI:302342089" /db_xref="GeneID:9493100" /translation="MIARYTLPEMGRLWTDESKYAAWLRVELAACRAWHKLGRIPAED LAQIEAKAAFDAARIEEIEKETRHDVIAFLTNVAEHVGPSSRFIHMGMTSSDVLDTAY ALLIKQSGQLILAALDRLLAALEKRAHEHKLTPQMGRSHGIHAEPVTFGLKLAGFHAE FQRDRDRVVSAIDAAARGKISGAVGTYAHLPTELEAMVMEELGLRAAVASTQVVSRDG LAEYFCALAILGGSVERLAVEIRHLQRTEVLEVEESFGKGQKGSSAMPHKRNPVSSEN LSGQARLLRAYAMAALEDMALWHERDISHSSVERAIGPDANVLAHYSLHRLAGVVERL TVHPERMLKNLNLTGGLIHSQQVLLALVEAGLSREDAYRLVQRNAMATWAEGGSFKQR LLADAEVMAALGQGGPALIEKQFDLAPHFKNVDFIFGEVFGPKGGAR" misc_feature complement(748172..749470) /locus_tag="Deba_0652" /note="adenylosuccinate lyase; Provisional; Region: PRK07492" /db_xref="CDD:181000" misc_feature complement(748337..749461) /locus_tag="Deba_0652" /note="Adenylsuccinate lyase (ASL)_subgroup 1; Region: Adenylsuccinate_lyase_1; cd01360" /db_xref="CDD:176464" misc_feature complement(order(748364..748369,748382..748387, 748394..748396,748406..748408,748526..748528, 748538..748543,748547..748552,748559..748582, 748586..748594,748601..748606,748613..748618, 748622..748627,748634..748636,748646..748648, 748661..748666,748736..748741,748745..748750, 748754..748756,748766..748768,748787..748789, 748808..748810,748820..748822,748841..748846, 748850..748852,748898..748900,748904..748906, 748913..748924,748952..748954,748970..748975, 748991..748996,749003..749005,749012..749017, 749033..749035,749039..749056,749198..749203, 749207..749212,749237..749239,749264..749266, 749423..749428)) /locus_tag="Deba_0652" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176464" misc_feature complement(order(748646..748648,748661..748663, 748667..748669,748835..748837,749048..749050, 749204..749206,749267..749269)) /locus_tag="Deba_0652" /note="active site" /db_xref="CDD:176464" misc_feature complement(748175..748426) /locus_tag="Deba_0652" /note="Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions; Region: Lyase_I_like; cl00013" /db_xref="CDD:193612" gene complement(749578..750882) /locus_tag="Deba_0653" /db_xref="GeneID:9493101" CDS complement(749578..750882) /locus_tag="Deba_0653" /note="COGs: COG1906 conserved hypothetical protein; InterPro IPR007294; KEGG: dol:Dole_1082 hypothetical protein; PFAM: protein of unknown function DUF401; SPTR: A8ZX33 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF401); TIGRFAM: converved hypothetical integral membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806619.1" /db_xref="GI:302342090" /db_xref="GeneID:9493101" /translation="MFADFMAWPALAKVLICFVAVLAAGRLGLKLGLALALAGPLLGL WMGLGPSDLAEPCALALGRPLTINLVLVVLLILVLSRLMQQTGQLQRIVESFGVAARS PKAAAAVMPALIGLLPMPGGALFSAPMVEASCPGWRAQDDLGAKLATVNYWFRHHGEY WWPLYPGVIFSVALLHVQLWAYVLLMLPLALVHVAAGWYFLLRPLELPAPALTDRRGG WAAFLREVGPIITVVAALPLFWLVELGLSAAGRPAPWPPGAPLLAGLVAAVAQVCLKG RLGWRDLWAALKRMETLDMTLLVLGVTIFQTFMSESGAVALVQLDLARYGVPTLAMVA ALPFLSGMLTGIAFAFVATSFPLVVPLFADAQGVAFMAWGALAFFCGYAGMMLSPVHI CFLMSRDYFACSLGRCYGVFAPALAVVAVAAALWLGGWIILG" misc_feature complement(749656..>750546) /locus_tag="Deba_0653" /note="Protein of unknown function (DUF401); Region: DUF401; cl00830" /db_xref="CDD:163914" gene complement(750886..752631) /locus_tag="Deba_0654" /db_xref="GeneID:9493102" CDS complement(750886..752631) /locus_tag="Deba_0654" /note="KEGG: dma:DMR_30720 hypothetical protein; SPTR: C4XII7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806620.1" /db_xref="GI:302342091" /db_xref="GeneID:9493102" /translation="MAAMPFSAERLQRNLEALAFVAPEVARWLKGQRADPNAAETLRR HCCRRKQNLPAESAREGDITLVLGGGLLDEVSDFLRRMPAGHQVFLLEPRAWLLLAAL GRHDLSGHLGQEDLVIMAPGEASLEEALSRNPQLALGANVRLVHLYLAADEPACRQAS AALYHLWGRALCARDLALSCESHSAENLVGNLVYAAFMGAWSSLAGALRGAPAVLLLA GPGLEPAIEALRGHLGGAALFCDDEALPAILNAGLTPTAAGVTRCQAGPLLGFDHPNL PLVPLVAEEIAHSATLAAHPGSVFPCLGPRGTALGPLAGMAKWFTAQHHPLPRLAELA LLAGCAPLIVAGGDMADPTGDLCMSAVGGGLTQANMAQAAAAGAFGRVLARYDQTAFN AGQGLELPRTVAVDLLEVAKRLGGPGQPPRLAALEGETLLSPAELDAYGQALGQAALT ATRFWQRAAAPLADYPRRAGRQAHLWLNAADALFVALSDQAAADPMLSALLEGCLVRA FRRRHRLACWAASRSLPVEEAARQLQSCLEEMRARVGKLAGGLQKMSQDMRRLAHSLG RVGPCWGRPPGKASA" gene complement(752765..753535) /locus_tag="Deba_0655" /db_xref="GeneID:9493103" CDS complement(752765..753535) /locus_tag="Deba_0655" /note="InterPro IPR013247; KEGG: dal:Dalk_4331 SH3 type 3 domain protein; PFAM: SH3 type 3 domain protein; SPTR: B8FMH3 SH3 type 3 domain protein; PFAM: Bacterial SH3 domain" /codon_start=1 /transl_table=11 /product="SH3 type 3 domain protein" /protein_id="YP_003806621.1" /db_xref="GI:302342092" /db_xref="GeneID:9493103" /translation="MKLSRLACGALLAILSVVIAGPTALAGEKLWVSDQLQLTMRAQP TLDGRVVGYVRTGEWADVQETNEDGWSRVRLADGKEGWLQKRYLLSERPAMLRLAEIS PQASEMSGKLEALTAENQELKLKVENLEAVKTALEEASQKLASGGDKVTELVAENASL KQQVQQALRQAELAEDRYAALTKDAGDVVGLQKERDELRQEAARQKAKLDELTIEVDS LRSAGSLKWFLAGAGVLIVGWLMGLSLHRRKRRQGLLD" misc_feature complement(752786..753535) /locus_tag="Deba_0655" /note="SH3 domain-containing protein; Provisional; Region: PRK10884" /db_xref="CDD:182809" misc_feature complement(753272..753424) /locus_tag="Deba_0655" /note="Bacterial SH3 domain; Region: SH3_3; cl02551" /db_xref="CDD:141512" gene 753720..755276 /locus_tag="Deba_0656" /db_xref="GeneID:9493104" CDS 753720..755276 /locus_tag="Deba_0656" /note="COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR001789:IPR003607:IPR011006:IPR006674; KEGG: tye:THEYE_A0181 response regulator; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; SPTR: C6MU13 Response regulator receiver modulated metal dependent phosphohydrolase; PFAM: HD domain; Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver modulated metal dependent phosphohydrolase" /protein_id="YP_003806622.1" /db_xref="GI:302342093" /db_xref="GeneID:9493104" /translation="MAQAVSREKIKARILIVDDEPINIEIMSELFSLHGAETISASDG ATALELARREMPDLVLLDVMMPGMNGYEVCRRLKADEVTRRLPVVMVTGLGQIDDKIK GLEAGADDFLSKPVHMAELVTRTRSLLRVKELNDDLEGAYRSLAGIASFTNNLLRDFD PYHFDMTRSLDGLMAFLLGSAAGAKMRPQRVLLFNAVDSNGWEGWVYNLEKGKVLRRA LQNGVDESMLKPLFGGSGRKASGQVYLNLDEGQRQAMAEAPLWRLIGQLPPWRNIVAF RSPGVAVAALDVQKAVGPYDAQVLSAMVANIHFFLRTISSQVQEVERAFLYTIGALAR AAETHDEDTGDHIMRVNGYAEALAQALGCEDEFCRVLAYSAQMHDVGKLHVHPDILRK PAGLDAREWEAVKLHTVYGARILGDDPRLAMAKEIALSHHEKWDGSGYPNGLAGEDIP LSGRITMMADVYDALRSARPYKRPFDHQASVDIIRRGDERLRPGHFDPRVLEAFLDNH RLFDEIFARY" misc_feature 753759..754097 /locus_tag="Deba_0656" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 753762..754106 /locus_tag="Deba_0656" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(753771..753776,753903..753905,753927..753929, 753993..753995,754050..754052,754059..754064) /locus_tag="Deba_0656" /note="active site" /db_xref="CDD:29071" misc_feature 753903..753905 /locus_tag="Deba_0656" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(753912..753917,753921..753929) /locus_tag="Deba_0656" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 754059..754067 /locus_tag="Deba_0656" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 754740..755141 /locus_tag="Deba_0656" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature order(754755..754757,754851..754856,755097..755099) /locus_tag="Deba_0656" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature 754854..754856 /locus_tag="Deba_0656" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene complement(755287..755685) /locus_tag="Deba_0657" /db_xref="GeneID:9493105" CDS complement(755287..755685) /locus_tag="Deba_0657" /note="InterPro IPR018202:IPR019775; KEGG: azc:AZC_3620 hypothetical protein; SPTR: B4V1D3 Superoxide dismutase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806623.1" /db_xref="GI:302342094" /db_xref="GeneID:9493105" /translation="MRCIKLLPLLIVFALATAVAADPLTGVWDVRGWEPGHRATAEPD YVGQARLAQRGEGYYFSGQMDGESYAGVGLFDPASGVFSVMFEAEGGKARGATALKLQ PDGALRGRWVYFHDRQGKLGAEVWTRAQPQ" gene complement(755818..756552) /locus_tag="Deba_0658" /db_xref="GeneID:9493106" CDS complement(755818..756552) /locus_tag="Deba_0658" /EC_number="2.7.7.38" /note="COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; InterPro IPR004528:IPR003329; KEGG: dol:Dole_0968 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: A8ZWH0 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno- octulosonatecytidylyltransferase" /protein_id="YP_003806624.1" /db_xref="GI:302342095" /db_xref="GeneID:9493106" /translation="MALHVVIPARYGSSRFPGKPLVDIGGKPMIQRVMERVAQAKGVQ TVAVATDDQRIAQAVSAFGGRVVLTDRPMRTGSDRVAHAAAELGLGPDELVVNVQGDQ PLLPPQLIDELSAVMLADADVLMATPVTPIRRPEEIADPNHVKAVMDVRGDALYFSRL AIPHPRDGGQVTFYKHLGVYIFRKGFLDIFAGLADGVLEEAEKLEQLRVLEHGYKLRC VISQFDSPEVDRPADAQRVAALLAGA" misc_feature complement(755833..756540) /locus_tag="Deba_0658" /note="CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide; Region: CMP-KDO-Synthetase; cd02517" /db_xref="CDD:133010" misc_feature complement(order(756250..756252,756256..756258, 756325..756327,756406..756408,756523..756531)) /locus_tag="Deba_0658" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133010" misc_feature complement(order(755914..755925,755944..755952, 755959..755964,756037..756039,756061..756081, 756085..756090,756106..756114,756130..756132, 756181..756183)) /locus_tag="Deba_0658" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:133010" gene complement(756555..757751) /locus_tag="Deba_0659" /db_xref="GeneID:9493107" CDS complement(756555..757751) /locus_tag="Deba_0659" /note="COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015421:IPR015424:IPR000653; KEGG: dps:DP1941 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: C8R1K8 Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family" /codon_start=1 /transl_table=11 /product="DegT/DnrJ/EryC1/StrS aminotransferase" /protein_id="YP_003806625.1" /db_xref="GI:302342096" /db_xref="GeneID:9493107" /translation="MPGFEWLGREEKEAVVDVMDRGVLFRYEFAEKRGDAWRVRQFEE AFAAYAGAKHALAVTSGSAALKVALCALGVGPGDEVITQGFTFVATWEAILDCGAEPV FCEIDDTLCMDPADLEKKITPRTRCIVPVHMMGAPADIGRIKAVADAHGVPVLEDTAQ AAGCFLNGRHMGTFGKVGTFSFDAVKTLTTGEGGMVITDDADLWRRASEYHDHGHDHR PVGRGNEGRNFFGFNFRMMELQGAIGLAQLAKMPAMVQTYQKHKNAMLEALGQVPGLS PRRVADRSGDAATFVSWFLPDAQAAARFNKSLADSGCGAVPWGVNTWHSYPNWEQLHA GATPIASGWPFKRPGGADLRFGPADLPNTKELLGRCLSWQIMLNWDDAKIEAMRQAVA KAAKEL" misc_feature complement(756570..757733) /locus_tag="Deba_0659" /note="Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399" /db_xref="CDD:30748" misc_feature complement(756579..757721) /locus_tag="Deba_0659" /note="3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616" /db_xref="CDD:99740" misc_feature complement(order(756798..756800,757194..757199, 757209..757211,757272..757274,757281..757283, 757566..757571)) /locus_tag="Deba_0659" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99740" misc_feature complement(order(757194..757196,757209..757211, 757272..757274,757281..757283,757494..757496, 757566..757571)) /locus_tag="Deba_0659" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99740" misc_feature complement(757194..757196) /locus_tag="Deba_0659" /note="catalytic residue [active]" /db_xref="CDD:99740" gene complement(757852..758943) /locus_tag="Deba_0660" /db_xref="GeneID:9493108" CDS complement(757852..758943) /locus_tag="Deba_0660" /note="COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019822:IPR002033; KEGG: gdj:Gdia_0438 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: A9HLG5 Putative sec-independent protein translocase protein tatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC" /codon_start=1 /transl_table=11 /product="Sec-independent protein translocase, TatC subunit" /protein_id="YP_003806626.1" /db_xref="GI:302342097" /db_xref="GeneID:9493108" /translation="MPEPQDKAIQDETPFVDHDEEPAAPPLGHMSFMDHLDELRVRLV RIGWGLLACFILTYAFKENIYHFLTEPLRQAAPQGVELIYLDPTEAFFTYIKAAFLAA VVLCAPWIFYQLWRFVAPGLYDRERRMVWPFVISSSTLFVGGAVFCFLAVFPFAFEFF RSFETSQAKPPTALEQAAGPELQKPGFREMVRAEVAEQLRQAGGAAVVAKLPEDKAGQ LARQIEDNVLERAIVALSAGQAVASGPGPGQLEIKAQFTMRNYLAFTTTLLFAFGVIF ETPLVLVFLGRVGVVNAAKLRKTRKYAILAAFVIGAVLTPPDVTTQIFMAVPMMLLYE VSIWLVAATERKKAAREAQEEQEESEDED" misc_feature complement(<758512..758847) /locus_tag="Deba_0660" /note="Sec-independent protein translocase protein (TatC); Region: TatC; cl00521" /db_xref="CDD:193851" misc_feature complement(757924..>758190) /locus_tag="Deba_0660" /note="Sec-independent protein translocase protein (TatC); Region: TatC; cl00521" /db_xref="CDD:193851" gene complement(758936..759331) /locus_tag="Deba_0661" /db_xref="GeneID:9493109" CDS complement(758936..759331) /locus_tag="Deba_0661" /note="COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR018448:IPR006312:IPR003998:IPR003369; KEGG: gsu:GSU0022 MttA/Hcf106 family protein; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Q74H70 MttA/Hcf106 family protein; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; twin-arginine translocation protein, TatB subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin arginine-targeting protein translocase TatB" /codon_start=1 /transl_table=11 /product="twin-arginine translocation protein, TatA/E family subunit" /protein_id="YP_003806627.1" /db_xref="GI:302342098" /db_xref="GeneID:9493109" /translation="MFGIGMPELLLILVVALVVVGPRKLPDIAKNLGKGLSEFRRATD EFKSQLNENEVVKDVQNMREDFRQTVDAMNPRTVFDASAKLEPSEPKPDLAARQAVYQ AIDDEQAAVAPTTPPPAPAAGQAQPKADA" misc_feature complement(759023..759331) /locus_tag="Deba_0661" /note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788" /db_xref="CDD:189129" gene complement(759359..761269) /locus_tag="Deba_0662" /db_xref="GeneID:9493110" CDS complement(759359..761269) /locus_tag="Deba_0662" /note="COGs: COG0322 Nuclease subunit of the excinuclease complex; InterProIPR004791:IPR000305:IPR001943:IPR001162:IPR 010994:IPR009055; KEGG: sat:SYN_01348 nuclease subunit of the excinuclease complex; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: excinuclease ABC C subunit domain protein; SPTR: Q1NJH4 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit" /codon_start=1 /transl_table=11 /product="excinuclease ABC, C subunit" /protein_id="YP_003806628.1" /db_xref="GI:302342099" /db_xref="GeneID:9493110" /translation="MIEASPEPKSAKREAKAMTSTDIQPAHGVEAIRQVLAHTPDNPG CYLMKDAAGQVIYVGKAKRLKARLGSYTRPPASHTYYTNKVEAMKAKVAAVEFVVTAS DKEAVLLEHTLIKRHRPRYNVELRDDKSYPYFRLALADDFPRLSLVRRPNPADGARYF GPFDSAGAAKQTLRMLQRIFPLRRCADAALKNRVRPCLDFETGRCLGPCVGAIDREGY QQLARQVLEFFGGGGRRLAAEMEARMLAAAAEERFEDAARLRDRLRALQSTLERQQVS LTDGSQLDAVALHDAEGALRLAVLKVRLGRVEDSRVFEFESEALSPAEVMGQALLSLY ATAPPPPLILLSHLPEEPELLAEVLAERAGRSVELRRPRRGDKRGLLELAMINAGQPR AAQDDDSGPALATLARKLNLAGPPRRMECVDISHLGGRLTVASVAAFEDGRPRKAGYR RYKLLGQEGAPDDYASMAQALERRLSGDDPPPDLLIVDGGKGQLAVAVDVLTRLRPAQ APALAAIAKGQAPGEPDRLFAPGRKNPLNLAARDRALLLVMRLRDEAHRFAVEYHKLL RSKALKRSILDEIPGVGPGRKKKLLTAFGSLAALKRASAREMVEQAGLDRPTAGRVEA FLAALDTLEGPQ" misc_feature complement(759392..761182) /locus_tag="Deba_0662" /note="excinuclease ABC subunit C; Validated; Region: uvrC; PRK00558" /db_xref="CDD:179065" misc_feature complement(760901..761143) /locus_tag="Deba_0662" /note="GIY-YIG catalytic domain; Region: GIY-YIG; cl01061" /db_xref="CDD:194023" misc_feature complement(759590..760054) /locus_tag="Deba_0662" /note="UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459" /db_xref="CDD:149497" gene 761407..761793 /locus_tag="Deba_0663" /db_xref="GeneID:9493111" CDS 761407..761793 /locus_tag="Deba_0663" /note="COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR003779; KEGG: sml:Smlt1304 4-carboxymuconolactone decarboxylase; PFAM: carboxymuconolactone decarboxylase; SPTR: B2FTF6 Putative 4-carboxymuconolactone decarboxylase; PFAM: carboxymuconolactone decarboxylase family" /codon_start=1 /transl_table=11 /product="carboxymuconolactone decarboxylase" /protein_id="YP_003806629.1" /db_xref="GI:302342100" /db_xref="GeneID:9493111" /translation="MTRYEQGWRKLLEIDGQAGVAVTESLADIAPDLAKYVVEFAFGD IYQRPGLDLRSREIATIAALTALGTATPQLKVHIRGGLNVGLSRQEIVEVIMQMAVYA GFPAALNGLFAAKEVFAQGDEAGPSK" misc_feature 761413..761766 /locus_tag="Deba_0663" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene complement(761839..762759) /locus_tag="Deba_0664" /db_xref="GeneID:9493112" CDS complement(761839..762759) /locus_tag="Deba_0664" /note="COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; InterPro IPR004463:IPR015870:IPR011334:IPR020568; KEGG: mmb:Mmol_1997 UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; SPTR: C6WYI0 UDP-3-0-acyl N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase" /codon_start=1 /transl_table=11 /product="UDP-3-0-acyl N-acetylglucosamine deacetylase" /protein_id="YP_003806630.1" /db_xref="GI:302342101" /db_xref="GeneID:9493112" /translation="MTIYQRTLSRPVACTGIGLHSGRRINLCLRPAEPDTGVVFKRTD IPDSPLIPGDVNAVVSTEMCTTVGSGGACVATVEHLMSALAGVGVDNVLVEVDAPEIP VMDGSSAPFVFLLKHTGLKSQDQPRKYFAVRREVCVSEGDKFLKVLPADHFSVDYTIE FDHPLIRRQRMVYSQKNGSYDRQLSRARTFGFLSEFRRLQEANLALGGSLDNAVVVDD YRVLNDDGLRFDDEFVRHKVLDFVGDMALVGRPIMGAFVAHKSGHALNNKLFRKFLAD PQAWQLVSPEAAPLDFEAAGALAMPQQAVA" misc_feature complement(761878..762753) /locus_tag="Deba_0664" /note="UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]; Region: LpxC; cl00512" /db_xref="CDD:189111" misc_feature complement(761932..762753) /locus_tag="Deba_0664" /note="UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331" /db_xref="CDD:146126" gene complement(762932..763603) /locus_tag="Deba_0665" /db_xref="GeneID:9493113" CDS complement(762932..763603) /locus_tag="Deba_0665" /note="COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: deb:DehaBAV1_0269 molybdenum cofactor guanylyltransferase; SPTR: A5FSG4 Molybdenum cofactor guanylyltransferase" /codon_start=1 /transl_table=11 /product="molybdenum cofactor guanylyltransferase" /protein_id="YP_003806631.1" /db_xref="GI:302342102" /db_xref="GeneID:9493113" /translation="MPEPPLGVVLAGGPGRRLGGGKPWRTVAGRRLIDLAVEKLAAAC PRVAVVCAEVAAMADLTVEVLADRWPGQGPLGGLATAFLDTGAASVLLLAVDAPLVQP ALLARLAQGDGRMRAVAPLGPLGPEPLLAWYSRDVLGQALGLLKGGQPRMKRLLGRHC TRFIGPAELAQLDPQGLSFINVNRPEDLALARRLMGECVKTDTSIAESVADGTQQPSA KSGPR" misc_feature complement(763040..763540) /locus_tag="Deba_0665" /note="MobA catalyzes the formation of molybdopterin guanine dinucleotide; Region: MobA; cd02503" /db_xref="CDD:133000" misc_feature complement(order(763316..763318,763322..763324, 763373..763375,763382..763387,763403..763405, 763454..763456,763538..763540)) /locus_tag="Deba_0665" /note="GTP binding site [chemical binding]; other site" /db_xref="CDD:133000" gene complement(763596..764021) /locus_tag="Deba_0666" /db_xref="GeneID:9493114" CDS complement(763596..764021) /locus_tag="Deba_0666" /note="InterPro IPR000551:IPR009061; KEGG: sfu:Sfum_0360 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: A0LF58 Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein" /codon_start=1 /transl_table=11 /product="MerR family transcriptional regulator" /protein_id="YP_003806632.1" /db_xref="GI:302342103" /db_xref="GeneID:9493114" /translation="MHLINEVSRRVDLSQKRIREYEKEGFIKPLREAKTNNRLYSDFD IAQIRRITALIHERGFTLACLRNLLLMAPCWNIFGCAQKELCPAYHRPHTPCYEVRRT DQTLCQGPCPRCAIFLNRGHDAVAVLERQGHGHAGAGDA" misc_feature complement(763716..764021) /locus_tag="Deba_0666" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" misc_feature complement(order(763908..763913,763920..763922, 763965..763967,764007..764015)) /locus_tag="Deba_0666" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133389" gene complement(764143..764334) /locus_tag="Deba_0667" /db_xref="GeneID:9493115" CDS complement(764143..764334) /locus_tag="Deba_0667" /note="KEGG: hsm:HSM_1696 hypothetical protein; SPTR: B0UVR5 Haemophilus-specific protein, uncharacterized" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806633.1" /db_xref="GI:302342104" /db_xref="GeneID:9493115" /translation="MNKVVIGLVLILAGLGYVALCHFYPSPQAWWWLEFTQARWVMFA LFIAGWLVLRTGLRRGRRR" gene complement(764395..765429) /locus_tag="Deba_0668" /db_xref="GeneID:9493116" CDS complement(764395..765429) /locus_tag="Deba_0668" /note="COGs: COG2199 FOG: GGDEF domain; InterProIPR000014:IPR000160:IPR000700:IPR013767:IPR 006089; KEGG: dsa:Desal_3020 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; SPTR: Q2BH87 Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) (Fragment); TIGRFAM: diguanylate cyclase; PAS sensor protein; manually curated; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase with PAS/PAC sensor" /protein_id="YP_003806634.1" /db_xref="GI:302342105" /db_xref="GeneID:9493116" /translation="MQDCPKRCARTAHQARSPPQGDKRPMDSIGPALRESLVLMEDFV GKMVTLCPDAIIGVDRRGVVTIFNPAAERLTGYPAAEALGKLTIDVIYGSRQRAREIK KALYSDEYGGPGRLEGYETEGVSRQGVCAPVRLSAIVLFKDGQEVGSVGFFHDMTRRK QLEDELRRLSITDSLTGLYNRRQFHSVLHDETARACRYGRPLSLICLDLDNFKPFNDN FGHQVGDSILQLVATCARGVLRGQDTAFRVGGDEFCLLMVETNEDNATIAADRFRRAF NDQWPIAMSFLHKGMEPVYMSLGVAQLQPGEKPDSLLMRADLAMYEAKRAGGNRSVTA GACINRTREC" misc_feature complement(764932..765276) /locus_tag="Deba_0668" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(765115..765276) /locus_tag="Deba_0668" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(764434..764916) /locus_tag="Deba_0668" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(764677..764679,764806..764808)) /locus_tag="Deba_0668" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(764674..764685,764689..764691, 764755..764757,764767..764769,764779..764784, 764791..764793)) /locus_tag="Deba_0668" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(764617..764619,764701..764703)) /locus_tag="Deba_0668" /note="I-site; other site" /db_xref="CDD:143635" gene 765641..766804 /locus_tag="Deba_0669" /db_xref="GeneID:9493117" CDS 765641..766804 /locus_tag="Deba_0669" /note="COGs: COG2202 FOG: PAS/PAC domain; InterProIPR000014:IPR001610:IPR000700:IPR009082:IPR 013655:IPR013767; KEGG: dal:Dalk_3642 PAS modulated sigma54 specific transcriptional regulator, Fis family; PFAM: PAS fold domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SPTR: B8FGV0 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor protein" /protein_id="YP_003806635.1" /db_xref="GI:302342106" /db_xref="GeneID:9493117" /translation="MTTHLDDNPGGQGPAGPDTDGPADQAGPPAGAGPPRGEERFRQL VEMLPETVFESDITARLTFANRQAFKTFGFSPRDFARGVSGYMLLAPEDRPRAFDYMA SVAGGGPGEGVEFTALRKDGGVFPIMMYASPIVRQDEVVGFRGIVVDISGLKQAQEAL RRSEEKYRLVVQNASEGLLVSVDLRFAFVNPKAEAILGHAAEALLGMTYRDVIHPDDL PAVVEISRQRARMDPAQSGASHACRVLRGDGRTVWVEFSGVPIDWDGRQGWLNFVSDV TARRQAHEEALLRAKLQAAIETAGAACHELNQPLQSIVLMAELTLAQLPANDPLRPRM EKMRQEMRRMAAITHRLSGITVYRSRDYLGAHSRILDLEGAGQAVGPPGDEQA" misc_feature 765752..766120 /locus_tag="Deba_0669" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 765782..766090 /locus_tag="Deba_0669" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(765830..765832,765842..765844,765860..765862, 765902..765913,765989..765991,766004..766006) /locus_tag="Deba_0669" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(765893..765895,765905..765907,765929..765931, 765938..765943,766025..766027,766031..766033) /locus_tag="Deba_0669" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 766127..766501 /locus_tag="Deba_0669" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 766172..766468 /locus_tag="Deba_0669" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(766205..766207,766217..766219,766235..766237, 766274..766285,766370..766372,766385..766387) /locus_tag="Deba_0669" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(766265..766267,766277..766279,766301..766303, 766310..766315,766406..766408,766412..766414) /locus_tag="Deba_0669" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" gene complement(766801..767607) /locus_tag="Deba_0670" /db_xref="GeneID:9493118" CDS complement(766801..767607) /locus_tag="Deba_0670" /note="COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: acr:Acry_1715 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: A5FZ87 enoyl-CoA hydratase; PFAM: enoyl-CoA hydratase/isomerase family" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_003806636.1" /db_xref="GI:302342107" /db_xref="GeneID:9493118" /translation="MEPYETLSVQDHGAVRLLTLNQPQRFNPLDFASGPELARALEDA QAAAGVGAVVLTGAGKAFAAGGDVRQMRDIVENGGDIRRFFSDLAYILAKTTITLRRL RLPVIAAINGVAAGGGLAWALAADLALAAEGVRFDPAYIRIAVCPDGGASAIVPRLIG HKRASEFFLLGRAIDAATARDWGLINQVVAPAELLPRALEAAERLAQAPAQALARTKA LLNQAVFGDLEVVLENERQGIMDLCGQPDFAEGLRAFFEKRPTRFNQGRP" misc_feature complement(767041..767589) /locus_tag="Deba_0670" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(767179..767181,767188..767193, 767257..767265,767269..767271,767404..767418, 767428..767430,767524..767526,767530..767532)) /locus_tag="Deba_0670" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(767257..767259,767410..767412)) /locus_tag="Deba_0670" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(767050..767052,767059..767061, 767092..767094,767101..767106,767110..767115, 767119..767124,767137..767142,767146..767154, 767158..767160,767176..767187,767221..767232, 767293..767295,767329..767331)) /locus_tag="Deba_0670" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" misc_feature complement(766813..>767202) /locus_tag="Deba_0670" /note="enoyl-CoA hydratase; Provisional; Region: PRK06688" /db_xref="CDD:180658" gene 767799..768620 /locus_tag="Deba_0671" /db_xref="GeneID:9493119" CDS 767799..768620 /locus_tag="Deba_0671" /note="InterPro IPR002482:IPR018392; KEGG: rmr:Rmar_0215 lytic transglycosylase catalytic; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: D0MD11 Lytic transglycosylase catalytic; PFAM: LysM domain" /codon_start=1 /transl_table=11 /product="peptidoglycan-binding lysin domain protein" /protein_id="YP_003806637.1" /db_xref="GI:302342108" /db_xref="GeneID:9493119" /translation="MGRSVKRNIDVHGMAQRLKKIKLSSLEAVLGGLILVGMLYLVSI WMGAFGAADRPATQAEAAPQKGKLNAAIVASERALARLEAMEADIEAMRRRMDEAGLG DDKPDGLFGGAREAGQSSALAAADPNVARKLDDLERRMGPFDKGNSAQRMTVMERLGR LERQMVLLAKWTNDVKNAMGQTAKGAAPSPTIAAVSGRQQTVKAAAVAKPKSKARAAN NHRIVYKVRAGDTLARIARVHAVTIADIQRWNPDIGSGHRIMVGQGLVIFSGEAS" misc_feature 768462..768599 /locus_tag="Deba_0671" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature order(768468..768470,768477..768479,768486..768488, 768501..768503,768510..768512) /locus_tag="Deba_0671" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" gene 768617..770053 /locus_tag="Deba_0672" /db_xref="GeneID:9493120" CDS 768617..770053 /locus_tag="Deba_0672" /note="COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674; KEGG: chl:Chy400_2505 polynucleotide adenylyltransferase region; PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SPTR: Q1NUR4 polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain; PFAM: HD domain; poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="polynucleotide adenylyltransferase/metal dependent phosphohydrolase" /protein_id="YP_003806638.1" /db_xref="GI:302342109" /db_xref="GeneID:9493120" /translation="MSEGWPAFFSDNRLQLARRLALRREQTLWLCGGAIRDALLDRRP ADLDLAADGDAAALAQDLAHELNGRYILLDPDHQSCRVVADGQAIDLTGLRAPTIEQD LVARDFTINAMAAPLDALLAGRPVLLDPTGGQADLRAGLLRPAGSGVLRADPLRVLRA GRLAAELGLSPAPGLPERLGRAASGLAQTPKERLAHEWLAMLEAADPNRGVNLLEQCG ALGLLLPALEAGRGLGQNPFHHLDVFDHNLACLAAAQDIWRDPSPLFGAMAAETADYL TPPRRRALLFCAALLHDVGKSATRLETGPGWATFYRHDSVGAELAHAACQRLGLAKAD SRFVARMTAMHMRPFHLLGAQNRGQLTARGARRLIQAVGDDLPGLFILAMADTVAGRG AQRPPDAEKRLTRLYGRVAHLRDSQLKAALAAPPLLDGRQLMAALGVGPGPEVGRLLA LLREAQLDGAITNPYEALNLARRRMRRG" misc_feature <768809..769033 /locus_tag="Deba_0672" /note="Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins; Region: NT_Pol-beta-like; cl11966" /db_xref="CDD:196289" misc_feature 768860..769990 /locus_tag="Deba_0672" /note="tRNA adenylyltransferase; Region: tRNA_CCA_actino; TIGR02692" /db_xref="CDD:131739" gene 770086..770179 /locus_tag="Deba_R0015" /db_xref="GeneID:9493121" tRNA 770086..770179 /locus_tag="Deba_R0015" /product="tRNA-Sec" /db_xref="GeneID:9493121" gene complement(770261..771280) /locus_tag="Deba_0673" /db_xref="GeneID:9493122" CDS complement(770261..771280) /locus_tag="Deba_0673" /note="KEGG: afw:Anae109_0448 NusB/RsmB/TIM44; SPTR: A7H7G7 NusB/RsmB/TIM44" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806639.1" /db_xref="GI:302342110" /db_xref="GeneID:9493122" /translation="MRFFIRLLLTMIIAAAVAQPATAQEGWIRWVDPAERAFSLDAPA GWRVEGGLRRHAAVDVRPEVTMTSPDGLIFIRIGDAANPTMVQPNQQMAAMGFVEGRW YSPGYGVNMLVMRYLPGARFALDYYLPKSLGPISQVIVRELNQPSNQAMSIMASAGIQ GRVDTADLTFQTTEAQGPRQGYLLIQTRLIIAPGAPDMGNWEVTKLSGYLAAPQALPQ AWRIYTRALGSFQWDPYWWEGQMRQVGATSYVVSRTENELARIIQEMTYHRQQVADEA HQKWTEYIRGTRTFTGPDGNPREIDANADQYVMAPDGRIFGRDQNLGNEGFFVGQDGA YYTKE" gene 771450..772262 /locus_tag="Deba_0674" /db_xref="GeneID:9493123" CDS 771450..772262 /locus_tag="Deba_0674" /note="COGs: COG1073 Hydrolase of the alpha/beta superfamily; KEGG: pca:Pcar_2424 enzyme (3.4.-); SPTR: Q3A1U4 Putative enzyme (3.4.-); PFAM: Prolyl oligopeptidase family; Putative lysophospholipase" /codon_start=1 /transl_table=11 /product="enzyme (3.4.-)" /protein_id="YP_003806640.1" /db_xref="GI:302342111" /db_xref="GeneID:9493123" /translation="MGALAVGAGVLLMATWLSGWQRLVESQIFYPEKQIHYTPRDMGL AYEDVWFESAGGVRLHGWFVPAAVGRTVLLFCHGNAGNVGDRVDNIMRLNRIGISVFI FDYRGYGNSRGRPSEEGLYRDVEAACNVAQARAKQEKARLVIFGRSLGGVAAVHVAAR NHCAGLILESTFTHLGAMARIHFPMPLPEQWLSSRFNARKKISAVRAPILFFHGDQDD IVPLALGRRLFMAAPEPKEFVTLEGAGHNDTYLIGEDAYFAKFRAFCEGLPL" misc_feature 771615..771827 /locus_tag="Deba_0674" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature 771663..772190 /locus_tag="Deba_0674" /note="Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695" /db_xref="CDD:193171" gene 772359..772559 /locus_tag="Deba_0675" /db_xref="GeneID:9493124" CDS 772359..772559 /locus_tag="Deba_0675" /note="KEGG: xcv:XCV0971 hypothetical protein; SPTR: Q3BX11 Putative membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806641.1" /db_xref="GI:302342112" /db_xref="GeneID:9493124" /translation="MSKLNVLLLRLGLGLVSGWFLNLLFFSKLPMAAAFRSGVDWLIS LILAGIVVGAAYMSEALRKRGQ" gene complement(772629..772994) /locus_tag="Deba_0676" /db_xref="GeneID:9493125" CDS complement(772629..772994) /locus_tag="Deba_0676" /note="InterPro IPR010753; KEGG: dal:Dalk_0245 protein of unknown function DUF1330; PFAM: protein of unknown function DUF1330; SPTR: B8FMT7 Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF1330)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806642.1" /db_xref="GI:302342113" /db_xref="GeneID:9493125" /translation="MVGRVGFGANAKQKEATMNSEDKFYMLNALWFKPDGGREKYQEY LRAAGPIVLRFGGRPLPSFKPFKAVIGKFDADLIFFVEWPSWTVFKQFMADPDYQAIV HLREEAITDSLLIRCQRLD" misc_feature complement(772692..772883) /locus_tag="Deba_0676" /note="Protein of unknown function (DUF1330); Region: DUF1330; cl02288" /db_xref="CDD:194288" gene complement(773035..774984) /locus_tag="Deba_0677" /db_xref="GeneID:9493126" CDS complement(773035..774984) /locus_tag="Deba_0677" /note="COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR001789:IPR002545:IPR011006; KEGG: dal:Dalk_0296 response regulator receiver modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: response regulator receiver; CheW domain protein; SPTR: C8QZE4 Response regulator receiver modulated CheW protein; PFAM: CheW-like domain; Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver modulated CheW protein" /protein_id="YP_003806643.1" /db_xref="GI:302342114" /db_xref="GeneID:9493126" /translation="MSVPSDIRILLVEDSSIMRKMELAILRELGFVNVSEADDGRAAV EKLVTEEPVELIISDWNMPNFDGYELLKWVRADARRKNTPFIMATAQGEKKQVSLARE AGVSALVAKPFNADELRAKIEQCFGQAEAADEGSKARQPQFTDDGRLKLKIAHIQITD HLILGVLKHQIETGLARPKHFVLETVCLPGWNPVQQKLENGELDGALVLAPIGMDLFG YGVPIKLCLLAHKNGSIFVRRKSREYRKDRPADYFRDTAFYIPHRLSVHHMISHMYLS QLGLAPGTPGESVSDVRFEVVPPIKMPELLAQSELCSGFMVAEPLGTKAIASGAAELH FLSGEVWEHHPCCVVTLRDEVIAAHEAAVQEFISLLVKAGQFVKTEPGAAADIAVNFL DPGKTLGLKKAVLQNVLTEPSGITTTDLFPVIDDLRRMQDYMVHKMGVGAAVDLDAFV ETRFAEVACQGLPRELSSHAPGEDLDLVAKVEAARAAAGQSSKAMLTSEGKYLSFALG GEDWAMAVLKTREIVGMQPVTKVARMPEYIRGVINLRGRVIPLVDLRLKLGMDQRAYD ERTCVIVVEVMGRKGVVQTGVVVDSVTEVLNIRQDQIMEAPNFGAQLDTRHIQGLVQV GGRVKILLNIDRLLSDQDMNMLEAV" misc_feature complement(774616..774960) /locus_tag="Deba_0677" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(774607..774957) /locus_tag="Deba_0677" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(774649..774654,774661..774663, 774718..774720,774784..774786,774808..774810, 774943..774948)) /locus_tag="Deba_0677" /note="active site" /db_xref="CDD:29071" misc_feature complement(774808..774810) /locus_tag="Deba_0677" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(774784..774792,774796..774801)) /locus_tag="Deba_0677" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(774646..774654) /locus_tag="Deba_0677" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(773611..774540) /locus_tag="Deba_0677" /note="ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715" /db_xref="CDD:31059" misc_feature complement(773062..773484) /locus_tag="Deba_0677" /note="CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and...; Region: CheW_like; cl00256" /db_xref="CDD:185867" gene complement(775105..775986) /locus_tag="Deba_0678" /db_xref="GeneID:9493127" CDS complement(775105..775986) /locus_tag="Deba_0678" /note="COGs: COG2043 conserved hypothetical protein; InterPro IPR003748; KEGG: dal:Dalk_1633 protein of unknown function DUF169; PFAM: protein of unknown function DUF169; SPTR: B8FAN5 Putative uncharacterized protein; PFAM: Uncharacterised ArCR, COG2043" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806644.1" /db_xref="GI:302342115" /db_xref="GeneID:9493127" /translation="MSTIAGLYARMIEAMGVAGLEIPAAYVRLYGAGDDIPPQLLKHA PRSESVMCCQALRHVEGGEPILLTIDNIGCVAAAITLGLVDERQPEPLPGARVYTCVM KEQSGLGPGFRPPAPAQFTSGEVYACKDAGRAEFALFGPDDPGRFKDVATARAAVAEM AAIQPATTKAVFVFSNAYDELDIEPHVVVLSPRPAELTRIVQAWAFVTGGRVRADMGP LRAVDSDLIVRPHLSGQINVSSYCLGSRLLAGLPADRMGMGLPMACFRQVVEGMVASR LGYPFHAYLGRGPRPGA" misc_feature complement(775171..775932) /locus_tag="Deba_0678" /note="Uncharacterised ArCR, COG2043; Region: DUF169; cl00894" /db_xref="CDD:193970" gene complement(776119..776424) /locus_tag="Deba_0679" /db_xref="GeneID:9493128" CDS complement(776119..776424) /locus_tag="Deba_0679" /note="KEGG: rmr:Rmar_2607 hypothetical protein; SPTR: D0MFZ1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806645.1" /db_xref="GI:302342116" /db_xref="GeneID:9493128" /translation="MQKNFFSDLFDFSFSEFVTPRLVKVLYILAIVGIALYTLFGLFS AFAYSTGFASTLLALILVPIGALIMLILARFYMELLLVIFRIADKVDKIAQNKGVSE" gene 776516..777037 /locus_tag="Deba_0680" /db_xref="GeneID:9493129" CDS 776516..777037 /locus_tag="Deba_0680" /note="KEGG: dat:HRM2_47730 hypothetical protein; SPTR: C0QHG3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806646.1" /db_xref="GI:302342117" /db_xref="GeneID:9493129" /translation="MIRPLPDNGVTGGPPWADPAQWRDLNRRLERACAVGHDQARQAA LALAGLLGQADALLDELCAAACPWCPTPCCLEAKVWLDRRDLLFIHLGGQSPPPAQLR QGRHDHCRYLGPRGCRLPRLQRPWVCTWYLCPTLSARLAGRPGQQARWQGLVAAIKEQ RRLIGALMADTIL" gene 777189..778673 /locus_tag="Deba_0681" /db_xref="GeneID:9493130" CDS 777189..778673 /locus_tag="Deba_0681" /note="InterProIPR000014:IPR001610:IPR000700:IPR013656:IPR 013655; KEGG: dal:Dalk_1610 PAS/PAC sensor protein; PFAM: PAS fold-4 domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SPTR: B8FAL2 Putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor protein" /protein_id="YP_003806647.1" /db_xref="GI:302342118" /db_xref="GeneID:9493130" /translation="MQDSTVEMERLRARVRELEGQLARAGGPGGGPMDAIGKRMAVFE AILQRAPYGVVIKDADMRFRLVNQRYCELLGLSREELLGKNSAELFPPELARGFDEED RRVMETQEPLSRTSSVFFGGRHRWLRVHKSPIVDANGLVYGVLAAVMDVTERQVYKLA LEESQRRYHQLFETNCAMKMIIDPADGSILDVNQAACAFYGYPRYVLLTMNVGDLCAD GRREALERVRRLAEGCPLPLEARHLLASGQTRDVELHHGPVSHGASLYVYVIIHDITA RKRAELALRHSEERLELALKGAGMAMWDHNLQSGEIFVDERIQDLLGHNYADVGHDAK FFWSLVLPEDAPLMRQAIDQNLTGQSDSLSCELRLRAAGGDYRWVQVTGRVVARDEAG KPSRMAGTLLDISRRKSAEQERERLIAELQTALAQVRTLSGLLPICSHCKKIRDDQGY WNQLEAYVARHSNAEFTHSICPECAAKLYPEIYARKRGDQAEKP" misc_feature 777336..777641 /locus_tag="Deba_0681" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature 777339..777650 /locus_tag="Deba_0681" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature order(777384..777386,777396..777398,777414..777416, 777453..777464,777540..777542,777552..777554) /locus_tag="Deba_0681" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(777444..777446,777456..777458,777480..777482, 777489..777494,777573..777575,777579..777581) /locus_tag="Deba_0681" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 777678..778040 /locus_tag="Deba_0681" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 777726..778010 /locus_tag="Deba_0681" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(777762..777764,777774..777776,777792..777794, 777831..777836,777912..777914,777927..777929) /locus_tag="Deba_0681" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(777822..777824,777834..777836,777852..777854, 777861..777866,777948..777950,777954..777956) /locus_tag="Deba_0681" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 778080..778400 /locus_tag="Deba_0681" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature 778119..778391 /locus_tag="Deba_0681" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature order(778128..778130,778140..778142,778158..778160, 778203..778214,778293..778295,778308..778310) /locus_tag="Deba_0681" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(778194..778196,778206..778208,778230..778232, 778239..778244,778329..778331,778335..778337) /locus_tag="Deba_0681" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" gene complement(778670..780886) /locus_tag="Deba_0682" /db_xref="GeneID:9493131" CDS complement(778670..780886) /locus_tag="Deba_0682" /note="COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterProIPR011761:IPR016040:IPR016102:IPR013650:IPR 003781; KEGG: dat:HRM2_02900 hypothetical protein; PFAM: CoA-binding domain protein; ATP-grasp domain protein; SPTR: C0QFL6 Putative uncharacterized protein; PFAM: CoA binding domain" /codon_start=1 /transl_table=11 /product="CoA-binding domain protein" /protein_id="YP_003806648.1" /db_xref="GI:302342119" /db_xref="GeneID:9493131" /translation="MSATELIDKAIAAGQHALSEADSKRVLAQYGVPVVEERRAADAD QAAAIAQAMGWPVVLKGLGAKLTHKSELGLVRLGLTSAEAVRQAAAAMAATAGADLEG FLLQPQVAGRREFVAGLLTDDQFGPVVMFGLGGVFTEALDDAVFRIAPIDQAQALSMI DELRSRALLGPFRGEAAADRQQLAAALVGLSRLAMDEPRVREIDINPLLVSPDGQVRA VDALIVLGQAVRRSEARPPVSPAAMAALFHPNSVAYIGASDVFGKWGNRLFTDTLHGG FPGQVHLVNPKGGVIAGRPVHKSVLDIAEPVDLAVVTVPAAKVLALIPELKQKGVTSV VLVSSGFAEVGPEGQAMQDELVRAAREAGILILGPNTMGLCNPHHKFYCSGAGARPAP GATAFVAQSGNMGVQLLFFAEDQGIGIRAFAGSGNEAMLTVEDALDGFEADKLTKTVL LYLESVKDGRRFFQSASRLSRRKPVVALKGGRTAIGGKAAASHTGALASNNRVFEAAC RQAGVVLADQPMDMLDLSAAFASLPLPAGRRVAIVTLGGGWGVVTSDLCSEYGLEVAE LSPAIIAEIDKLLPPYWSRANPVDLVGEPDEKLPMTILDMLLDWDGCDAVIHLGIMGR KAMAQRLIDATLATNPDCDRQYLGQGRQILREIERGYVEHIVRAMERANKPVIGVSLD ADPNDKTVVEIAGATFKGVFFQTPERAVKALAKMAGYESWLDAQGVPRQERGVRAD" misc_feature complement(780425..>780847) /locus_tag="Deba_0682" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042" /db_xref="CDD:31244" misc_feature complement(778730..780160) /locus_tag="Deba_0682" /note="acetyl coenzyme A synthetase (ADP forming), alpha domain; Region: AcCoA-syn-alpha; TIGR02717" /db_xref="CDD:131764" misc_feature complement(779789..780133) /locus_tag="Deba_0682" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 781123..781689 /locus_tag="Deba_0683" /db_xref="GeneID:9493132" CDS 781123..781689 /locus_tag="Deba_0683" /note="KEGG: bav:BAV2122 hypothetical protein; SPTR: B5GK01 Two-component system response regulator" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806649.1" /db_xref="GI:302342120" /db_xref="GeneID:9493132" /translation="MKTKMLLYFRLLVMIALTLATPACQLEEPLSPEAQRFKDAVRGQ LAMLEPGVVKGLAADDEAAVDEALMAYFGQTPWLEEPCSYSVHVVNGQHLYVAGRWHA PGSQSAASVKKEWVRYSNFKDIFDELEGGRVKPVRLYDQDGPFVVICAPLRRDDKFIG AIGLILPDDCLPGRFDLTPDQVLAIDYN" gene 781742..783055 /locus_tag="Deba_0684" /db_xref="GeneID:9493133" CDS 781742..783055 /locus_tag="Deba_0684" /note="COGs: COG2233 xanthine/uracil permease; InterPro IPR006043; KEGG: mem:Memar_0808 xanthine/uracil/vitamin C permease; PFAM: xanthine/uracil/vitamin C permease; SPTR: A3CTP1 xanthine/uracil/vitamin C permease; PFAM: Permease family" /codon_start=1 /transl_table=11 /product="xanthine/uracil/vitamin C permease" /protein_id="YP_003806650.1" /db_xref="GI:302342121" /db_xref="GeneID:9493133" /translation="MSATDQSRALRQTLDRWPSPAALLIFSLQWLVVAVPGVLVVGDL VAVAWGLDGAGRLAFQQRLFLLMGLTQAAQVVFGHRLPGLVGPASVLLVGVLGSVSSG PGAVYGAMAIGGLVMALLGPTGWASRLGRLYTPPVLASTLMLIAISLVPAMGRMVFDP AAAGRAWGASFLFAMALACLILWAQSRLRGLAGASMLMAGMVVGSAVYYLAGMGPWPG LPPASGQGLTLATFAGPSLSFDLPVVLAFIICSLALVANELGTLESLGRMMDLPDMEK RVGRSVAVGGLGCLAAGLLGVLGPVTYSVSPGVVLATDNASRWSLLPVALALVLLAFW PQGMGFFQLVPQPVAGAVLFCLMALTTYAALAVLEGGACAADRRSGLVVGASLVAGAI ISFLPEDARQAMHPYLRPVLGNGFVTGLLLAMILDRLLPRPSAAK" misc_feature <782060..783052 /locus_tag="Deba_0684" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" gene complement(783064..783612) /locus_tag="Deba_0685" /db_xref="GeneID:9493134" CDS complement(783064..783612) /locus_tag="Deba_0685" /note="InterPro IPR000868; KEGG: aba:Acid345_0669 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: Q1ITX6 Isochorismatase hydrolase; PFAM: Isochorismatase family" /codon_start=1 /transl_table=11 /product="isochorismatase hydrolase" /protein_id="YP_003806651.1" /db_xref="GI:302342122" /db_xref="GeneID:9493134" /translation="MTHALTRPEDCALIVIDVQEKLLPVIDGHGAVLANCQRLARFAG LMDLPVLACRQRKLGQIVAPLAQALPPGLEAMEKTSFDCFGLEPFAGAVAGLGRRTLV LVGIEAHICVMQTALGALAAGYAVQVVADAVGSRAAGNHALALERLRQAGALITSAEM FIYELLQRADRPEFAQVLPLVK" misc_feature complement(783136..783582) /locus_tag="Deba_0685" /note="Isochorismatase family; Region: Isochorismatase; pfam00857" /db_xref="CDD:189743" misc_feature complement(783112..783579) /locus_tag="Deba_0685" /note="YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them...; Region: YcaC_related; cd01012" /db_xref="CDD:29550" misc_feature complement(order(783280..783282,783379..783381, 783562..783564)) /locus_tag="Deba_0685" /note="catalytic triad [active]" /db_xref="CDD:29550" misc_feature complement(order(783421..783423,783544..783546, 783553..783555)) /locus_tag="Deba_0685" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29550" misc_feature complement(783292..783297) /locus_tag="Deba_0685" /note="conserved cis-peptide bond; other site" /db_xref="CDD:29550" gene complement(783647..785155) /locus_tag="Deba_0686" /db_xref="GeneID:9493135" CDS complement(783647..785155) /locus_tag="Deba_0686" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR004090; KEGG: vap:Vapar_4189 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: C5CXU6 methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003806652.1" /db_xref="GI:302342123" /db_xref="GeneID:9493135" /translation="MGWFGGSIRIKALTAFGLLLATTAALVLGAIYFLGAREADGAVV NIAGRQRMLSQKMTKEALMLAADFGQPAEVKKQLAASVELFEQGMTGLIDGDAAAGLP AADGAVAAQLALVQGLWRQLRQPLGQILQDRPDAARMRQATHALVQGNLGLLAEMNKA VDMLADIARGKVVLLKMLMLLGLGLSCAVFALAWLVTERGVIGQLGRLVAAVEQLRSG DLRPTAHQFSGRDEIAHVGVALESLRVAWADIARGIFEGAARVDNAAGEINSGNQDLA DRTSGQAAAVEQTASTIEQMTTTVRKNAENAAKANDLAQKTTRIATDGGQSAARTAQA MAEVNASSQKIKEITSVVNEIAFQTNLLALNAAVEAARAGEAGRGFAVVAGEVRNLAG RSAAAAKEIQGLIGESAQKVEQGVRLARENAELLEAILDNVRDVGETVAEISAASHEQ ALGIEEVNKAVGQMDQAVQQNAALVEQAAASSADMAAAAQELRRQARLFVLD" misc_feature complement(783761..784234) /locus_tag="Deba_0686" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(785229..786197) /locus_tag="Deba_0687" /db_xref="GeneID:9493136" CDS complement(785229..786197) /locus_tag="Deba_0687" /note="COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: adg:Adeg_0325 xylose isomerase domain protein TIM barrel; PFAM: xylose isomerase domain protein TIM barrel; SPTR: C9RB61 xylose isomerase domain protein TIM barrel; PFAM: xylose isomerase-like TIM barrel" /codon_start=1 /transl_table=11 /product="xylose isomerase domain protein TIM barrel" /protein_id="YP_003806653.1" /db_xref="GI:302342124" /db_xref="GeneID:9493136" /translation="MTAPLAISTVWAQEKTPPDQPRPPAAQIAQGILERLEVVGPRHL ELEYRLDRQTLGLLRPELKSRGFQVVSLHNYIPTPEGLRASGDAFNLAHLDPDQRALA VRHAQASLELAADMEVGALVVHLGQITAILDKKVTPDAARAGGLTPEMAAHLRQRAAL APRHLDQACFSLERLLGRAEKLGVAIALENRNHAAELPDIAETGHLLARFAGAPIGFW FDTGHANTQALAGLAPLADWPRLYGDRLLGCHLHDAIGPDDHMPPGLGQLDWPALLAM VAHAPRLVLEVRPSHSVREMADAVRLIEGLLPQARAKSRQERQSSL" misc_feature complement(785271..786104) /locus_tag="Deba_0687" /note="Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082" /db_xref="CDD:31279" misc_feature complement(785286..>785933) /locus_tag="Deba_0687" /note="AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-...; Region: AP2Ec; cl12060" /db_xref="CDD:187176" misc_feature complement(order(785340..785342,785418..785420, 785424..785426,785448..785450,785529..785531, 785538..785540,785631..785633,785826..785828)) /locus_tag="Deba_0687" /note="Metal-binding active site; metal-binding site" /db_xref="CDD:28903" gene complement(786288..787496) /locus_tag="Deba_0688" /db_xref="GeneID:9493137" CDS complement(786288..787496) /locus_tag="Deba_0688" /EC_number="2.8.1.7" /note="COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterProIPR017772:IPR015421:IPR015424:IPR000192:IPR 020578:IPR016454; KEGG: pca:Pcar_0050 cysteine desulfurase; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: C8QX39 Cysteine desulfurase NifS; TIGRFAM: cysteine desulfurase NifS; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS" /codon_start=1 /transl_table=11 /product="cysteine desulfurase NifS" /protein_id="YP_003806654.1" /db_xref="GI:302342125" /db_xref="GeneID:9493137" /translation="MSHERVIYLDNNATTQVAPEVVAAMLPFFGDRYGNPSSMHNFGG EVAHHLAQAREKVAALLGATPGELIFTSCGTESDNTAIMSALRSQPGKKHIITTRVEH PAVLNFCQNLSERGHDVTFLPVDRGGNLDPDKLREAIREDTALVSIMWANNETGVVFP VEELAAICNRRGVLFHTDAVQAVGKIPINLAESKIDMLSLSGHKLHAPKGIGVLYVRK GTPFVPYIMGGHQERGRRAGTENAPYIVGLGKACELAAQRMVEENSRVKALRDRLEAG LLKIEATILNGDKQRRLPNTCSISFEYIEGESILLHLSSRGVCASSGSACTSGSLEPS HVLRAMGVPYTAAHGSIRFSLSVYNTEEEIDYVLEHMPGVIEKLRAISPFWSQFKKTG AACLTGYMEP" misc_feature complement(786357..787487) /locus_tag="Deba_0688" /note="Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520" /db_xref="CDD:30866" misc_feature complement(786402..787478) /locus_tag="Deba_0688" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature complement(order(786885..786887,786894..786896, 786954..786956,786963..786965,787047..787049, 787263..787265,787272..787277)) /locus_tag="Deba_0688" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature complement(786885..786887) /locus_tag="Deba_0688" /note="catalytic residue [active]" /db_xref="CDD:99742" gene complement(787493..788350) /locus_tag="Deba_0689" /db_xref="GeneID:9493138" CDS complement(787493..788350) /locus_tag="Deba_0689" /note="COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterProIPR010238:IPR002871:IPR007419:IPR001075:IPR 016217; KEGG: dvl:Dvul_2295 Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; SPTR: C8QX38 Fe-S cluster assembly protein NifU; TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU" /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly protein NifU" /protein_id="YP_003806655.1" /db_xref="GI:302342126" /db_xref="GeneID:9493138" /translation="MWEYTDKVKEHFVNPKNVGEIDDASGVGEVGSLACGDALKLMIK IDDQGRIADAKFQTFGCASAIASSSALTEMIKGMTIEQAENLTNKDIAEYLGGLPKEK MHCSVMGEQALQAAIRNFRGQAPLPQAEGEIICQCFGVTDQEIRRVASENNLHTVEEI TNYTKAGGGCGDCVDKIQQILDELWTSGALAAKVQAPPQAEPKKKLTNIQKMRLVEET LEREVRPALKQDGGDIELIDIDGDKVLVSLRGMCSSCAASQATLSQFVQAKLREFVTD ELVVEEVKA" misc_feature complement(787502..788350) /locus_tag="Deba_0689" /note="Fe-S cluster assembly protein NifU; Region: NifU_proper; TIGR02000" /db_xref="CDD:162652" misc_feature complement(788003..788341) /locus_tag="Deba_0689" /note="Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664" /db_xref="CDD:143480" misc_feature complement(order(788036..788041,788045..788050, 788162..788164,788168..788170,788243..788248, 788321..788326,788333..788341)) /locus_tag="Deba_0689" /note="trimerization site [polypeptide binding]; other site" /db_xref="CDD:143480" misc_feature complement(order(788036..788038,788168..788170, 788246..788248)) /locus_tag="Deba_0689" /note="active site" /db_xref="CDD:143480" misc_feature complement(787796..787957) /locus_tag="Deba_0689" /note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; cl01093" /db_xref="CDD:194032" misc_feature complement(787502..>787624) /locus_tag="Deba_0689" /note="NifU-like domain; Region: NifU; cl00484" /db_xref="CDD:153799" gene complement(788402..788809) /locus_tag="Deba_0690" /db_xref="GeneID:9493139" CDS complement(788402..788809) /locus_tag="Deba_0690" /note="InterPro IPR017515:IPR004360; KEGG: sfu:Sfum_0455 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: A0LFF3 methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA epimerase" /protein_id="YP_003806656.1" /db_xref="GI:302342127" /db_xref="GeneID:9493139" /translation="MKIKRLAHIGVAVGSVDEAAKVYTSMLPLELTSTEPVGELVTGF IPVGETNIELVQSTTDDGVIAKYVAKKGEGVHHLAFEVDDIVAAIAELKAKGVPLTSD EPRPGAHGAKVVFLHPKATHGVLIELCQYPQDH" misc_feature complement(788420..788794) /locus_tag="Deba_0690" /note="Methylmalonyl-CoA epimerase (MMCE); Region: MMCE; cd07249" /db_xref="CDD:176672" misc_feature complement(order(788438..788443,788462..788464, 788519..788521,788525..788527,788570..788572, 788576..788581,788585..788587,788591..788596, 788654..788656,788660..788665,788720..788731, 788735..788737,788741..788746,788756..788758, 788777..788779,788783..788785,788792..788794)) /locus_tag="Deba_0690" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176672" misc_feature complement(order(788423..788425,788429..788431, 788465..788467,788471..788473,788579..788581, 788618..788620,788651..788653,788684..788686, 788786..788788)) /locus_tag="Deba_0690" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176672" misc_feature complement(order(788429..788431,788579..788581, 788651..788653,788786..788788)) /locus_tag="Deba_0690" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176672" gene 789104..790402 /locus_tag="Deba_0691" /db_xref="GeneID:9493140" CDS 789104..790402 /locus_tag="Deba_0691" /note="InterPro IPR001387:IPR011051:IPR010982:IPR013096; KEGG: sfu:Sfum_4068 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; cupin; SMART: helix-turn-helix domain protein; SPTR: A0LQN1 Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="YP_003806657.1" /db_xref="GI:302342128" /db_xref="GeneID:9493140" /translation="MSEPVRVASGVSELDRLLGGLFIGDNVVWLDDAGSLATVFCGNF IMASQSQERPLIYVTFDRSPKNLLDKLGPLADYPALTILDCFTHGKGMGSEVFLKFYE DPPARRAANVVLMSAPGDPEEVSQALYGLQARHQGDVRFVLESITGMQELWGDEEAIV NFYSRTCPRLYELNTIAYWIMEKAAHSDRLKAQIAHIAQVVIELSIKRGTTNLMVVKA EKRPSENLHRQFNYWSKGASVSFDPQRRAASRFDLGKRIKELRGKKGLSQTDLAKMVG VTPSTISQVESNHIYPSLPALIKMAEVLSVEIASFFNDGAEDRQRVVFSAEEAVEVKL VDMPAGAVRAQLLSPVDLDSKTEPYIIEIPPKTSLPSHFFMHKGEEVGYVLAGRVQLK IKKAVHNARAGDVIFLTNELPTNWQNPGRTPARLLWLKIG" misc_feature 789119..789901 /locus_tag="Deba_0691" /note="RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]; Region: RAD55; COG0467" /db_xref="CDD:30815" misc_feature 789119..>789637 /locus_tag="Deba_0691" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 789863..790384 /locus_tag="Deba_0691" /note="DNA-binding transcriptional repressor PuuR; Provisional; Region: PRK09943" /db_xref="CDD:182158" misc_feature 789863..790036 /locus_tag="Deba_0691" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(789875..789877,789887..789889,789962..789964) /locus_tag="Deba_0691" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(789884..789886,789959..789961) /locus_tag="Deba_0691" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(789905..789910,789941..789943,789950..789952, 789962..789967) /locus_tag="Deba_0691" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature 790178..790390 /locus_tag="Deba_0691" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 790880..792493 /locus_tag="Deba_0692" /db_xref="GeneID:9493141" CDS 790880..792493 /locus_tag="Deba_0692" /note="COGs: COG0069 glutamate synthase domain 2; InterPro IPR013785:IPR002932; KEGG: ate:Athe_2034 ferredoxin-dependent glutamate synthase; PFAM: ferredoxin-dependent glutamate synthase; SPTR: B9MLC1 Ferredoxin-dependent glutamate synthase; PFAM: Conserved region in glutamate synthase" /codon_start=1 /transl_table=11 /product="ferredoxin-dependent glutamate synthase" /protein_id="YP_003806658.1" /db_xref="GI:302342129" /db_xref="GeneID:9493141" /translation="MNLNRPNSNEAIQTKNRSRDVAPQSGLCTRCMDGCKGNCDLFQA TFRGRELLYPGPFGDVTAGADKDYPEDYSHLQIMGYALGADGTQADPDHATFPTVSTE TSFGVTHKVKMKIPMFTGALGSTEIARKNWEHFAIGAAITGISLVCGENVCGIDPGLE FDNNGKVKKAPDMERRVELYRRYHEGYGDILVQMNVEDTRLGVAEYVVDKLGVETIEL KWGQGAKCIGGEIKVNSLERAQELKRRGYIVTPDPDNPAMQAAFKSGAIKEFERHSRL GFVDQESFHKEVERLRNLGAKRVTLKTGAYPMRELAMAIKWASEAKIDLLTIDGAPGG TGMSPWRMMEEWGIPALYLHSMTYELCKRLADNGEWVPDIAFAGGFSTEDHIFKALAL GAPFTKAVCMGRALMIPGMVGKNIQKWLDGEDGGLPSTVSKYGATKEEIFVCLEELKG KFGSEINNIPLGAVGIFSAGEKLRVGLQQLMAGARKWRVDLITRKELACLTEQAAKVT GLPYIMDAYREEALAVIDGKDWTKVRAIA" misc_feature 790952..792373 /locus_tag="Deba_0692" /note="Glutamate synthase domain 2 [Amino acid transport and metabolism]; Region: GltB; COG0069" /db_xref="CDD:30418" misc_feature 791015..792379 /locus_tag="Deba_0692" /note="Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant...; Region: GltS_FMN; cd02808" /db_xref="CDD:73370" misc_feature order(791237..791248,791327..791329,791462..791464, 791534..791536,791552..791554,791603..791605, 791783..791785,791879..791887,792008..792010, 792014..792016,792077..792082,792104..792106, 792158..792160,792173..792175) /locus_tag="Deba_0692" /note="active site" /db_xref="CDD:73370" misc_feature order(791237..791248,791327..791329,791462..791464, 791534..791536,791783..791785,791879..791884, 792008..792010,792014..792016,792077..792082) /locus_tag="Deba_0692" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature order(791552..791554,791603..791605,791882..791887) /locus_tag="Deba_0692" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature order(792104..792106,792158..792160,792173..792175) /locus_tag="Deba_0692" /note="3Fe-4S cluster binding site [ion binding]; other site" /db_xref="CDD:73370" gene complement(792609..793979) /locus_tag="Deba_0693" /db_xref="GeneID:9493142" CDS complement(792609..793979) /locus_tag="Deba_0693" /note="COGs: COG1249 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR004099:IPR016156:IPR013027:IPR000815:IPR 012999; KEGG: rxy:Rxyl_1767 mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: B4D639 Pyridine nucleotide-disulphide oxidoreductase dimerisation region; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain" /codon_start=1 /transl_table=11 /product="FAD-dependent pyridine nucleotide-disulfide oxidoreductase" /protein_id="YP_003806659.1" /db_xref="GI:302342130" /db_xref="GeneID:9493142" /translation="MSAYDFDVLVIGGGGSAGFTAATTAMKNGARVAMVESGRLGGLC ILAGCMPSKALIHSADNLRRQNADRLAAYPGVQEFRRGVVDFLAQRRAQAVAAKQQQG LELLRGRARFLDAHAVAVDGKPVSAASIVIATGSVEVVPDVPGLAQSGYLTSETFLAL ERPPRSLLVLGGGTMALELAQYARRMGVSVSIVQRGQALLSKEDPAIGQILAQCLAEE GVELFLGTKLLDVTKTADGARARFIHQGGERAIEAEALLLSLGRRPNSDGLDLAAAGV ATGPGGAVTVDQFMRASAPHIFAAGDVTARLMVVNQAIVEGQCAGHNASSDKPKAIDD RVVPRAVFTDPQVARVGLSAAQAQAAGVDFRQASYDLAELGAAQTYPGGVRGLMNLRA EAKSGRIIGADLVAPEASLMIHDVAVAMKLGGAAADLADIPYVHPCLAEISELTAGRL ARMVGR" misc_feature complement(792654..793967) /locus_tag="Deba_0693" /note="dihydrolipoamide dehydrogenase; Validated; Region: PRK06292" /db_xref="CDD:180516" misc_feature complement(793239..793484) /locus_tag="Deba_0693" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(792657..792971) /locus_tag="Deba_0693" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene complement(793976..795043) /locus_tag="Deba_0694" /db_xref="GeneID:9493143" CDS complement(793976..795043) /locus_tag="Deba_0694" /note="COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR002550; KEGG: dps:DP2605 hypothetical protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; SPTR: Q6AJZ2 Putative uncharacterized protein; PFAM: CBS domain; Domain of unknown function DUF21" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806660.1" /db_xref="GI:302342131" /db_xref="GeneID:9493143" /translation="MRGVVVVLFVVSVAVSQGVSFLCSLLEAVLFSTRVISLEAAMEG GSSAAAQMLGLKARMERTLSAILILNTLAHTGGASIAGWAAGDLWGADSLFIFSVLFT LSTLVFTEILPKTLGTLYWRGLWPWAVTPLKIMIVGLTPLIWLTQLLTRVFTRKGQAT ASPHVSEQEILAAASMGQRGGEISQMEAELIHNIIGLEEISASDIMTPRTVMKLANGA LNVSQILPEARKWSYSRLPVYVGDPENIVGYVLRDHILATDPARHDPKVSELARPLHF VPASANALRLLKHFLSRRAHMCVVVDEYGGVDGLVTMEDVLESLVGAEIVDETDQVVD MQELARRRAKDMLAGREEQKS" misc_feature complement(794483..794983) /locus_tag="Deba_0694" /note="Domain of unknown function DUF21; Region: DUF21; pfam01595" /db_xref="CDD:190047" misc_feature complement(794090..794383) /locus_tag="Deba_0694" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590" /db_xref="CDD:73090" gene 795208..796089 /locus_tag="Deba_0695" /db_xref="GeneID:9493144" CDS 795208..796089 /locus_tag="Deba_0695" /note="InterPro IPR000073; KEGG: rha:RHA1_ro03772 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: B5HUR7 Alpha/beta hydrolase; PFAM: alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_003806661.1" /db_xref="GI:302342132" /db_xref="GeneID:9493144" /translation="MQSVELTFDSHGQACAARLHLPDNAKKPPVVVMGHGFGALASFG LEPFAQALAQRGLASLVFDYRHFGPSQGLPRQLISIRRQLQDWRAAMALARSLEAVDG ARLGLWGSSFSGGHVVVLAASDPEVAAVVSQAPMVDGLASALLLGPAYAAGGLLHGLW DLARAALGLAPHYAPIVGRPGSSAFLRTPDAFDGYMALVPPGAPWRNQTPARVFLAAA FYRPTARATRVQCPLLVVAAGRDGLIPPAATRKMAAKAPRGQLIELDCGHFEVYVQPT LRQLAVAEADFLVRHLL" misc_feature 795298..796014 /locus_tag="Deba_0695" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene complement(796086..797000) /locus_tag="Deba_0696" /db_xref="GeneID:9493145" CDS complement(796086..797000) /locus_tag="Deba_0696" /note="COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterProIPR010099:IPR016040:IPR001509:IPR013549:IPR 003006; KEGG: dal:Dalk_2593 domain of unknown function DUF1731; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; SPTR: Q1NNH6 Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_003806662.1" /db_xref="GI:302342133" /db_xref="GeneID:9493145" /translation="MKSVLITGASGFVGGALCRALVADGWRVLALCRTAGSAARLAQG VEAVIGDPTSPGPWQERVAGCQAAVNLAGASIFGRWSASYKELIRSSRLASTGNLVQA VAGRPSGAPFRLVSASAVGYYGFGGDEELDEASPPGDDFLARVCQEWEAQAMAAEQSG AMVAITRFGVVLGSGGGALGQMLPLFRLGLGGRLGHGRQWLSWIHQADLAAALKFVLE RPELRGAFNCCAPHPVTNRQFAKSLGRALGRPAVLPAPAFAVRLALGQFGSVLLEGQR ALPQRLRGAGFRFAQPTLDQALADLLPR" misc_feature complement(796095..796991) /locus_tag="Deba_0696" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(796107..796991) /locus_tag="Deba_0696" /note="TIGR01777 family protein; Region: yfcH" /db_xref="CDD:188166" misc_feature complement(order(796488..796499,796563..796565, 796575..796577,796644..796652,796782..796790, 796899..796907,796962..796964,796968..796973, 796977..796979)) /locus_tag="Deba_0696" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(796563..796565,796575..796577, 796644..796646,796725..796727)) /locus_tag="Deba_0696" /note="active site" /db_xref="CDD:187535" gene 797438..799570 /locus_tag="Deba_0697" /db_xref="GeneID:9493146" CDS 797438..799570 /locus_tag="Deba_0697" /note="COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR012833; KEGG: tai:Taci_0633 anaerobic ribonucleoside-triphosphate reductase; SPTR: D1B9B6 Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside-triphosphate reductase" /protein_id="YP_003806663.1" /db_xref="GI:302342134" /db_xref="GeneID:9493146" /translation="MPQLKVVDKSSHEVHGAETTDMALFVRTSAEEMDSWDSSRIEQA LIRETLLDDITAKEIAAEVERQIANAGIKMVTAPLIRELVNSKLIERGLEAERLRHTR LGVPLYDVDNMIRLPNKENANVPHGPEATNLTLAENIKKEYALISVFSPDVGDAHMRG DLHLHDLGFVDRPYCSGQSLEYIKKFGLNLPNSLALAKPAKHAEVLLAHMVKFAAALQ SNFAGAIGWDAVNLFFAPYLEGLDDRAVKQMAQMLIFEFSQQAVARGGQAIFTDINLY WEVPKHFENVPAIGPDGKYTGKTYAEYEKEAQRFVWKLFDVYKEGDGAGRPFFFPKPL VHITEKFFKTEGHMDFLRHICDVASEKGNTYFVFDRGDTAKISECCRLSFKLEQSDLD DANTPWRMRYSALQNVTINLPRIAYEAGGDDTKLFQILRQRIGLAAKAHIEKRDFIQN LLSHGPKGPLALLAMELDGTPYLRMHRVTYLVGMVGLNEMVQEHLGQELHDSEEALRF GLKVIAQMNLLCDYYAKRHGMRFVLEQTPAESTAYRFAKLDLKHYPERAKHNVRGDIF RGEVYYTNSTLFNVGATINPIERVKLEGRFHPLIEAGSITHVWLGEARPSAESLANFV IKIFRDTKNDQVAFSPEFSCCKSCGKTTRGIVDACSYCHGDDLEHITRITGYFTRVSS WNKGKVGELKDRYRNNGFFNANPKSEAV" misc_feature 797501..799525 /locus_tag="Deba_0697" /note="Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]; Region: NrdD; COG1328" /db_xref="CDD:31519" misc_feature 797540..797722 /locus_tag="Deba_0697" /note="ATP cone domain; Region: ATP-cone; pfam03477" /db_xref="CDD:190653" misc_feature 797795..799474 /locus_tag="Deba_0697" /note="Ribonucleotide reductase and Pyruvate formate lyase; Region: RNR_PFL; cl09939" /db_xref="CDD:186877" gene 799830..800081 /locus_tag="Deba_0698" /db_xref="GeneID:9493147" CDS 799830..800081 /locus_tag="Deba_0698" /note="KEGG: ava:Ava_3599 FAD dependent oxidoreductase; SPTR: Q3M731 FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806664.1" /db_xref="GI:302342135" /db_xref="GeneID:9493147" /translation="MTLFTKPGCEKCHYITDKFDLPALGIREDILAPDNPEALAHLAW HELVDVAERELPILVLDDMSHISGAIKIKSYLSKQAVGA" gene 800074..800817 /locus_tag="Deba_0699" /db_xref="GeneID:9493148" CDS 800074..800817 /locus_tag="Deba_0699" /note="COGs: COG1180 pyruvate-formate lyase-activating enzyme; InterPro IPR012840:IPR007197; KEGG: pvi:Cvib_0808 anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM domain protein; SPTR: Q1PZG6 Similar to ribonucleoside triphosphate reductase activating protein NrdG; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside-triphosphate reductase activating protein" /protein_id="YP_003806665.1" /db_xref="GI:302342136" /db_xref="GeneID:9493148" /translation="MPDGAGAARPEGVGAALPAIKGFLETSFVDWRGCIAAVLFLPGC NFACPYCHNHALAVEPESYQTRPLEDVLARLRPFVGWIDGVVVSGGEPTVNQGLERLL ALIKAEGFAVKLDTNGHRPAVLRRLVEAGLVDMVAMDLKAPLEALAYRRAAGVAADVA RIGQSVDFLIHSGVAHEFRSTIIPGWHGPAELAAMAQALRGCQGWTLQAMNPATAWNQ AALPLAGGVYAADDLARLQASLADAVGRR" misc_feature 800131..800673 /locus_tag="Deba_0699" /note="anaerobic ribonucleoside-triphosphate reductase activating protein; Region: NrdG2; TIGR02495" /db_xref="CDD:188228" misc_feature 800185..>800502 /locus_tag="Deba_0699" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(800203..800205,800209..800211,800215..800217, 800221..800229,800335..800337,800341..800346, 800416..800424,800482..800484) /locus_tag="Deba_0699" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene 800830..801750 /locus_tag="Deba_0700" /db_xref="GeneID:9493149" CDS 800830..801750 /locus_tag="Deba_0700" /note="KEGG: dge:Dgeo_0876 tetratricopeptide TPR_2; SPTR: Q1J006 P-loop ATPase, LuxR family containing TPR repeats" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806666.1" /db_xref="GI:302342137" /db_xref="GeneID:9493149" /translation="MAALRLIVFDSGEGVCLFLRLPGGRRMLIDSGVRPSGKALGFLR RRGEVGPLRPLDEYLRPACGQPDIHQWLAVLCLVRGLVLRPGGSWVFWQGLASDESGF SLRAHVMPRARVAQPPLDIFPQPPMLVLGLQPEEILDLGGPPGAWVCNSSLAARLGPA PDGGRQLLVGGDLRAAAWQRLLADGETRRLVGGVSGYAAGEPAAGHDLGRGLVMACLP WLLLGWREAQEPWPAEDGDEAWRRPLGTRPMAELQIDVDEGGQMLVRGQRGEDNGLAW SGLARPPHDEALPAPWPLRRALAGSAEGDW" gene 801750..802061 /locus_tag="Deba_0701" /db_xref="GeneID:9493150" CDS 801750..802061 /locus_tag="Deba_0701" /note="KEGG: dae:Dtox_4264 HNH nuclease; SPTR: C8VZI6 HNH nuclease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806667.1" /db_xref="GI:302342138" /db_xref="GeneID:9493150" /translation="MERDLPLELIERVWQKARPAPRLDPDSVRQDCFGAWIYRHAFGD RASAYGWDLDYIVPPDCGGRGELDNLRPLQWQNSLMRGLGRLTRPVSALGLGNALLII D" gene complement(802058..802690) /locus_tag="Deba_0702" /db_xref="GeneID:9493151" CDS complement(802058..802690) /locus_tag="Deba_0702" /note="COGs: COG0546 phosphatase; InterPro IPR006402:IPR006439:IPR005834; KEGG: dvm:DvMF_0135 haloacid dehalogenase domain protein hydrolase; PFAM: haloacid dehalogenase; SPTR: B8DNN9 haloacid dehalogenase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E" /codon_start=1 /transl_table=11 /product="HAD-superfamily hydrolase, subfamily IA, variant 3" /protein_id="YP_003806668.1" /db_xref="GI:302342139" /db_xref="GeneID:9493151" /translation="MNRPLALVFDFDGTLAELNIDFGLMARQVEALARRMGFAGPWPA GYLLEVVGRVANALGDGFAAQAEEVIRQVEVEAAARGRLFDFCRPLLAGLRREGLAVA IVSRNCAAAIRRVFPDIDAHCQAFLPREAAPRPKPDPAHVLAALERLGVWPAQAWMIG DHPTDMSAGRAAGCFCLGLTSGRSDAAALCAAGAGLVLADAGMIAEMIAA" misc_feature complement(802172..802675) /locus_tag="Deba_0702" /note="haloacid dehalogenase-like hydrolase; Region: Hydrolase; pfam00702" /db_xref="CDD:189678" misc_feature complement(802157..802468) /locus_tag="Deba_0702" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature complement(802376..802378) /locus_tag="Deba_0702" /note="motif II; other site" /db_xref="CDD:119389" gene complement(802687..803766) /locus_tag="Deba_0703" /db_xref="GeneID:9493152" CDS complement(802687..803766) /locus_tag="Deba_0703" /note="COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR001453; KEGG: dps:DP1721 molybdopterin biosynthesis protein; PFAM: molybdopterin binding domain; SPTR: C8QZ64 Molybdopterin binding domain protein; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain" /codon_start=1 /transl_table=11 /product="molybdopterin binding domain protein" /protein_id="YP_003806669.1" /db_xref="GI:302342140" /db_xref="GeneID:9493152" /translation="MSGDCGQQCANGPSGRIVPLEQAVGLILAHDVTEIVPGKAKGPA FRKGHVVRAEDLERLAAMGKRNLYVLDIGPEQMHEDEAAGLLAQALAGPGVCLGGPPR EGKITLLADRDGLFMVDVERLTSFNLVDEVMCATIHRHTPVKKGQPVAGTRAIPLTPL RQNIARAVEVAQGGLIEVAPIKPARTGIVVTGNEVASGLIQDGFAPVVRKKLAELGAS ALGVKIAPDDRAAVAGAIRSLLADGAELIITTAGMSVDPDDVTRHAIVDAGGLDLVYG APILPGAMFLVGKLAGPHGLVPVLGVPACALYHPTTILDVILPRVLAGQSPDRADMAA LAHGGFCRDCPGGCRFPFCGFGRGA" misc_feature complement(802747..803694) /locus_tag="Deba_0703" /note="MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is...; Region: MoeA_like; cd03522" /db_xref="CDD:58169" misc_feature complement(order(802834..802836,802843..802845, 802855..802860,803005..803013)) /locus_tag="Deba_0703" /note="putative MPT binding site; other site" /db_xref="CDD:58169" gene complement(803763..804410) /locus_tag="Deba_0704" /db_xref="GeneID:9493153" CDS complement(803763..804410) /locus_tag="Deba_0704" /note="COGs: COG2191 formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: aba:Acid345_0503 formylmethanofuran dehydrogenase, subunit E; PFAM: formylmethanofuran dehydrogenase subunit E region; SPTR: Q1IUE2 formylmethanofuran dehydrogenase, subunit E; PFAM: FmdE, Molybdenum formylmethanofuran dehydrogenase operon" /codon_start=1 /transl_table=11 /product="formylmethanofuran dehydrogenase subunit E region" /protein_id="YP_003806670.1" /db_xref="GI:302342141" /db_xref="GeneID:9493153" /translation="MPQTIAIPPGQTPPRALVDALVEASARSHGHLCSGQVIGVRMSI LGLGLLGYGCPLGMPEIKNIVGFVEVERCLADAVAAATGLRFGRGSLKMINLGLLAVS FLDLTDGRAVRVVNREQSKELARDYAPAGLTKPSAVQEAAYRLMPDDVLFEASWVRID LEPNERPGARPEKIPCQRCGVLVRSGQMRRVAGQNLCAVCAGQAYFSPAPGDDRS" misc_feature complement(803793..804356) /locus_tag="Deba_0704" /note="Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]; Region: COG2191" /db_xref="CDD:32374" misc_feature complement(803943..804326) /locus_tag="Deba_0704" /note="FmdE, Molybdenum formylmethanofuran dehydrogenase operon; Region: FmdE; pfam02663" /db_xref="CDD:190380" gene complement(804422..805216) /locus_tag="Deba_0705" /db_xref="GeneID:9493154" CDS complement(804422..805216) /locus_tag="Deba_0705" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216:IPR017441; KEGG: dol:Dole_1525 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A8ZZS9 methyltransferase type 11; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003806671.1" /db_xref="GI:302342142" /db_xref="GeneID:9493154" /translation="MAVASGLPKGADGYILSDMDKIFEAQETAQYEAWLETPAGAQYL RASCALLDQILDFTPGWRVLDVGCGLGAHLEHLHERGMFCQGLEAGPVAAKLASQRLG GRARIVKGDAHDLPFDDNEFDAVVLVNTLELTERRAQVLAEAARVAASRVCVISANPF DPSAQIARWLGRKHPVLTGRPIGLLGLRRLVREVLGPVPTTWSSAVTWPWPRVGRHPL GELVGLCAAVTPRLRAMPLPITTAPPVAGREALRAHGRVSSIHRVK" misc_feature complement(<804821..805033) /locus_tag="Deba_0705" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(804833..804835,804881..804889, 804950..804955,805001..805021)) /locus_tag="Deba_0705" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 805310..805552 /locus_tag="Deba_0706" /db_xref="GeneID:9493155" CDS 805310..805552 /locus_tag="Deba_0706" /note="KEGG: mxa:MXAN_4033 hypothetical protein; SPTR: Q1D561 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806672.1" /db_xref="GI:302342143" /db_xref="GeneID:9493155" /translation="MQRRRKSKRGPTFLARELDYAEVRCHRHLDCGLYNACLGLVSAR RWTSFSCRQCELFPDGAPSIPRGPAEVLSMPVGSTR" gene complement(805596..806357) /locus_tag="Deba_0707" /db_xref="GeneID:9493156" CDS complement(805596..806357) /locus_tag="Deba_0707" /note="COGs: COG0398 conserved hypothetical protein; InterPro IPR015414; KEGG: dal:Dalk_0616 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: B8FJP3 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein-related protein" /protein_id="YP_003806673.1" /db_xref="GI:302342144" /db_xref="GeneID:9493156" /translation="MSADPPKIPTPRRPLWRPALAVALLLAVGLLTWLYWEPMWAFCQ RMWAMLADRETFRQRIQDYGAWAPLVFMGFQVAQVVFSPIPGELVGAAGGYVFGWWQS AIYSTISLALGSWINFFLARLLGRGLVERLAPPAYLAKTAELMERQGVILSFIFFVFP GFPKDVLCYVLGLSPMHWAVFMVLSSVGRIPGTLMLSLQGALVYNEQYWSLGLLLAIS LAMVAPVWIWREKIYGLLYRLDRRHGPIDDEDGQD" misc_feature complement(805659..806213) /locus_tag="Deba_0707" /note="SNARE associated Golgi protein; Region: SNARE_assoc; cl00429" /db_xref="CDD:193815" gene complement(806354..807694) /locus_tag="Deba_0708" /db_xref="GeneID:9493157" CDS complement(806354..807694) /locus_tag="Deba_0708" /EC_number="2.7.1.11" /note="COGs: COG0205 6-phosphofructokinase; InterPro IPR000023:IPR012004; KEGG: dol:Dole_2111 diphosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: A8ZTY2 Diphosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: phosphofructokinase" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase" /protein_id="YP_003806674.1" /db_xref="GI:302342145" /db_xref="GeneID:9493157" /translation="MNEIKHTVRPEDTLIPALGPAKIVNPLTTMKAPEKRGFTFLDDD SARVLINPYSCEPDADGNLPASLEKAGPRRHIYFDPTKLKAAIVTCGGMCPGINSLVR SIVLQLYYMYGVRNIVGVRYGLQGFIPSYGHDFIDLNPKTVQSIHGRGGSFLGMSRGP QPMDEIVDTLERQNIGLLFMIGGDGTLHAAQSIHQEITNRGLKIGLVAIPKTIDNDIC FVEMTFGFQTAVEAATRAILGAHNEAEGAPNGLGLVKLMGRHSGFVAAHATLALTEVN FCLVPEVDFDLDGPNGLLQALNNRMTARGHAVVVVAEGAGQKFFHTDHAEKDPSGNVR LGDIGTYLRDRFSAHFADQGVELNQKYIDPSYMVRSVPANSGDRIFTGFLGHHAVHAG MSGRTGLLISLWNNHYVHAPIPLAICHRKKIDPCGGLWRAVLESTGQPSLKNEA" misc_feature complement(806456..807448) /locus_tag="Deba_0708" /note="Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases...; Region: PFK; cl00204" /db_xref="CDD:193705" misc_feature complement(order(806588..806590,806597..806599, 806753..806755,806918..806926,807047..807049, 807053..807055,807059..807061,807128..807133, 807137..807145,807221..807223,807323..807325, 807419..807421)) /locus_tag="Deba_0708" /note="active site" /db_xref="CDD:29437" misc_feature complement(order(807128..807133,807137..807145, 807221..807223,807323..807325,807419..807421)) /locus_tag="Deba_0708" /note="ADP/pyrophosphate binding site [chemical binding]; other site" /db_xref="CDD:29437" misc_feature complement(order(806489..806491,806525..806527, 806546..806548,806558..806563,806780..806782, 806873..806875,806882..806887,806969..806971, 806978..806980,806993..806995,807029..807031, 807251..807253,807260..807262,807275..807277, 807377..807379,807389..807391)) /locus_tag="Deba_0708" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29437" misc_feature complement(order(806774..806782,806786..806788, 806867..806869,806873..806875,806969..806971, 807260..807265,807272..807277,807377..807379, 807389..807391)) /locus_tag="Deba_0708" /note="allosteric effector site; other site" /db_xref="CDD:29437" misc_feature complement(order(806588..806590,806597..806599, 806753..806755,806918..806926,806945..806947, 807047..807049,807053..807055,807059..807061)) /locus_tag="Deba_0708" /note="fructose-1,6-bisphosphate binding site; other site" /db_xref="CDD:29437" gene 807859..809022 /locus_tag="Deba_0709" /db_xref="GeneID:9493158" CDS 807859..809022 /locus_tag="Deba_0709" /note="COGs: COG1454 alcohol dehydrogenase class IV; InterPro IPR001670:IPR018211; KEGG: tai:Taci_1279 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Q1NLZ5 Iron-containing alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="iron-containing alcohol dehydrogenase" /protein_id="YP_003806675.1" /db_xref="GI:302342146" /db_xref="GeneID:9493158" /translation="MATQFTVEGVRRVTFGCGSAASLGEEVKLLGGRKALVVLDPSLA KLGVAAPALDALDKAGVEAVIYSDITREPEPAEADAAAALGRDNAVDVVVGIGGGSAL DLAKAAGVLITNQGQCTDYVGLELVKTPGKPVICLPTTAGTGSEVTFTAVFTRRADKF KGGINGRLLYPHMAILDPELTVSCPPYISAITGMDALTHAMEAYTSRAAHALSDHNAL AAIELIGGSLRQAVAHGENIQARSEMLLGAYLAGLALAQAGVGAVHAMAYPLGAFYDI PHGEANAVLLPYVLRHNIMACPERFAAMANALAELPGDMSTRDAAYACLHEVMDLSED VGIPATLKELNVPQASVPEMAKKAMTVARPIANNPRKVCAEDLEEIYHQAFGE" misc_feature 807889..809013 /locus_tag="Deba_0709" /note="Alcohol dehydrogenase, class IV [Energy production and conversion]; Region: EutG; COG1454" /db_xref="CDD:31643" misc_feature 807889..809001 /locus_tag="Deba_0709" /note="iron-containing alcohol dehydrogenases (Fe-ADH)-like; Region: Fe-ADH; cd08551" /db_xref="CDD:173961" misc_feature order(807976..807978,808150..808158,808165..808167, 808174..808176,808273..808278,808282..808284, 808339..808344,808396..808398,808420..808422, 808441..808443,808453..808455,808648..808650, 808660..808662,808690..808692) /locus_tag="Deba_0709" /note="active site" /db_xref="CDD:173961" misc_feature order(808441..808443,808453..808455,808648..808650, 808690..808692) /locus_tag="Deba_0709" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173961" gene 809188..810489 /locus_tag="Deba_0710" /db_xref="GeneID:9493159" CDS 809188..810489 /locus_tag="Deba_0710" /note="COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: mhu:Mhun_1561 acetyl-CoA hydrolase/transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: Q2FRF0 Acetyl-CoA hydrolase/transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain" /codon_start=1 /transl_table=11 /product="acetyl-CoA hydrolase/transferase" /protein_id="YP_003806676.1" /db_xref="GI:302342147" /db_xref="GeneID:9493159" /translation="MYQAEYAKKLVSAQQAAARVQDGWTLIHGLTMAEPPAILGAIAQ RLREGALQRLRVYSLLPLAVAGGTILDPLLCDRVEALTWFVGGGDRGLVDVGLNYFVP NHFHQVPRLIEEFTDVDVFVTTVSPMDKAGYFSFGTSNDYSTTAARRARLTILEVNRH MPRVFGQSQMHVSEVGLLVENHQPIAPMPHSPNKPEDAVIGQKVAELIPHEATLQLGV GALPNAVADYLGDHKDLGIHTEVLGPGMIKLIKAGVVSGAKKTLHPRKHVFTVAQGDD EMLAFMDDNPAMESYPVSYVNRPAVIARNRRMISVNTVIEVDLTGQCNAESLAGHQFS GAGGQLDFVRGAFDAPEGKSILAFRATAKGGAVSKIVGRLEPGAPVTTPRTDVHWLVT EFGAVNLKGMATSRRALAIIDLAHPDFRDDLRRQAEDLRLI" misc_feature 809191..810486 /locus_tag="Deba_0710" /note="Acetyl-CoA hydrolase [Energy production and conversion]; Region: ACH1; COG0427" /db_xref="CDD:30776" misc_feature 809191..809748 /locus_tag="Deba_0710" /note="Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550" /db_xref="CDD:111448" gene 810532..811740 /locus_tag="Deba_0711" /db_xref="GeneID:9493160" CDS 810532..811740 /locus_tag="Deba_0711" /note="COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR001958:IPR011701:IPR005829; KEGG: drt:Dret_2117 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C8X4C7 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_003806677.1" /db_xref="GI:302342148" /db_xref="GeneID:9493160" /translation="MQDETAKNGRAPLADGNFRILMAVTFFAVIGVSSLTPALPLVME AWSVHPAHIGWAVTAFALGGALGAPVSGVLADRLGRRRVLAPALLIFALGGAACGLAQ SFQQLLALRFVQGLGAGPLNTLTFTMAGDAYEGRARVLAMGLLGMAISVGSATASIFG GLTALAGWRWVFVMPLLALGCWWLVQYRFDGPEPQKSADGLGRYLGRVLGLVASRPMA GLLAADFCVFALLFGAFFTYGPLMLHQRLAAAPHVIGLAMTVVTVFIGLASALVGRLT AWWGSRALIVAGFGLYGLAMFIMSWAASIWPLALALACLGLGHGLLLPSVLELLTALS PPQLRAALMSVNSLTMRLGQTVAPVGFGLLLTVGGLREVFWAGAALAVGAIVVVAACL GRAAGGEDGA" misc_feature 810583..811605 /locus_tag="Deba_0711" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(810625..810627,810634..810642,810646..810651, 810700..810702,810709..810714,810721..810723, 810733..810738,810742..810747,810883..810888, 810895..810900,810907..810912,810919..810921, 810955..810960,810967..810972,810988..810990, 811216..811218,811225..811230,811237..811242, 811249..811251,811291..811293,811303..811305, 811315..811317,811324..811326,811336..811338, 811477..811479,811486..811491,811498..811500, 811510..811515,811522..811524,811555..811560, 811567..811572,811579..811584,811591..811593) /locus_tag="Deba_0711" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(811737..812498) /locus_tag="Deba_0712" /db_xref="GeneID:9493161" CDS complement(811737..812498) /locus_tag="Deba_0712" /note="COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bav:BAV2236 lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q2KYR6 Lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806678.1" /db_xref="GI:302342149" /db_xref="GeneID:9493161" /translation="MASLTVAIITKNEAANLPRWLAAVGPVADEIVAVDSGSSDATVD LLAQAGAKVCFRQWTGYADQRNHCIDQASGDWVLFLDADEFIDDELAQALNALKNGPP PAEAAFELTYKVFFFGRFLRHGGYYPERHLRLHRRGQARWVARQVHERLEADGPVGRL AGHVHHHSYRTVGDYLARAQRYSAEAAQQMLAAGRRAGPLTVVGHAGWSFFNRYILRL GFLDGYEGYLAARLESLYTLAKYARLRELSRQGRP" misc_feature complement(811815..812489) /locus_tag="Deba_0712" /note="UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; Region: Beta4Glucosyltransferase; cd02511" /db_xref="CDD:133005" misc_feature complement(order(812250..812252,812256..812258)) /locus_tag="Deba_0712" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:133005" gene complement(812503..813288) /locus_tag="Deba_0713" /db_xref="GeneID:9493162" CDS complement(812503..813288) /locus_tag="Deba_0713" /note="COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR011330:IPR002509; KEGG: sco:SCO2710 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Q9KYG2 Putative polysaccharide deacetylase; PFAM: polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_003806679.1" /db_xref="GI:302342150" /db_xref="GeneID:9493162" /translation="MIGWLTAGLGLAAAAGLSARYNWWRPRRPGLPVLMYHHVTDELN NTPLPKLRVTTKAFAAQLDLLRAKGYQTVSLAQAMAPDAPANGVVLSFDDGYEDFYSQ AWPLLRQRGMSATVFLVAGAIGGDNFWDRPKGEPREPLMDAARIRELAAAGVEFGGHG FGHVAMAGLSQADLARETIGCQEALGAILGQPCRVFSYPYGLYDAPAARAVGQAGFTV ACTTRPGMLGPGVDPLAAPRIIVKRSDNLLDLRLKLTRGQSRL" misc_feature complement(<812881..813216) /locus_tag="Deba_0713" /note="outer membrane N-deacetylase; Provisional; Region: hmsF; PRK14581" /db_xref="CDD:184753" misc_feature complement(812632..813027) /locus_tag="Deba_0713" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene complement(813285..814400) /locus_tag="Deba_0714" /db_xref="GeneID:9493163" CDS complement(813285..814400) /locus_tag="Deba_0714" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: nam:NAMH_1720 WalR protein; PFAM: glycosyl transferase group 1; SPTR: B9L6W2 Putative WalR protein; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806680.1" /db_xref="GI:302342151" /db_xref="GeneID:9493163" /translation="MDKLRIIHTEWSNGWGGQEIRVLSECLGMAGRGHWVGLAGCPEG KLGQRAREAGLAFFPLAMAGPWDARAMLGLGRLLAAQRVDVLHTHSSVDSWVGGLVAR LRGVVCLRTRHLSVPVNTNPLNVVYRLPQAVITTGESIRRHLIDDYGLAAERVVSIPT GVDTARFAPRPPEAALAAELGLDLARPVVAIVAVLRSWKRHDLFCQMAASLKGSRPDV QFLIVGDGPGWQRVNGYLDDMGLRGAVIMTGHRADVERILPLCTVCVLCSDAAEGVPQ AVLQQMAAERAVAASDAGDVGQVVIDGQTGLLYPAGDLAALERAVGRLLGDAELRQRL GRAGRQLVQQRHSMERMLDQTEAIYAKALAWRAGARP" misc_feature complement(813324..814385) /locus_tag="Deba_0714" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" gene 814503..815216 /locus_tag="Deba_0715" /db_xref="GeneID:9493164" CDS 814503..815216 /locus_tag="Deba_0715" /EC_number="3.1.26.3" /note="COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR011907:IPR000999:IPR001159:IPR014720; KEGG: sat:SYN_00796 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; PRIAM: ribonuclease III; SMART: ribonuclease III; double-stranded RNA binding domain protein; SPTR: Q2LVR4 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial" /codon_start=1 /transl_table=11 /product="ribonuclease III" /protein_id="YP_003806681.1" /db_xref="GI:302342152" /db_xref="GeneID:9493164" /translation="MDQTRLDMLKQLADQVGHGFSDWTALDEALRHSSFVHENPQRGP SNERLEFLGDAVLELVVTQELFLRFDQASEGQLSRARSSVVNEARLAEAARQIDLGPC ILLGKGEQGQGGQEKTSILADALEAVLAAVYLDGGLEAARDCVLALLGPLDERVIDRA PRRDYKTMLQERVQEDLRLTPRYRTIDESGPDHDKTFSVSIEINDRQLAMGAGKSKKE AEQNAARRGLTNWNADDFR" misc_feature 814527..815186 /locus_tag="Deba_0715" /note="ribonuclease III; Reviewed; Region: rnc; PRK00102" /db_xref="CDD:178863" misc_feature 814578..814958 /locus_tag="Deba_0715" /note="RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-...; Region: RIBOc; cd00593" /db_xref="CDD:29697" misc_feature order(814641..814646,814653..814658,814665..814667, 814674..814679,814686..814691,814695..814703, 814731..814733,814899..814901,814926..814928) /locus_tag="Deba_0715" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29697" misc_feature order(814641..814643,814650..814652,814662..814664, 814869..814871,814878..814880) /locus_tag="Deba_0715" /note="active site" /db_xref="CDD:29697" misc_feature order(814650..814652,814869..814871,814878..814880) /locus_tag="Deba_0715" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29697" misc_feature 814992..815186 /locus_tag="Deba_0715" /note="Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase...; Region: DSRM; cd00048" /db_xref="CDD:28930" misc_feature order(814992..814994,815010..815015,815142..815153, 815160..815162) /locus_tag="Deba_0715" /note="dsRNA binding site [nucleotide binding]; other site" /db_xref="CDD:28930" gene 815252..816142 /locus_tag="Deba_0716" /db_xref="GeneID:9493165" CDS 815252..816142 /locus_tag="Deba_0716" /note="COGs: COG1159 GTPase; InterProIPR005225:IPR005662:IPR004044:IPR015946:IPR 009019:IPR002917; KEGG: dal:Dalk_3409 GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SPTR: B8FLF1 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTPase of unknown function; KH domain; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain" /codon_start=1 /transl_table=11 /product="GTP-binding protein Era" /protein_id="YP_003806682.1" /db_xref="GI:302342153" /db_xref="GeneID:9493165" /translation="MNSGFVAIVGPPNAGKSTFLNHVLGFKLAITSDKPQTTRHRLLG VCNREESQIVFLDTPGLHKPMRALNKLMVRTAMAALQDVEAVLFMVEASAKGLAEGQR VAGMLAEAKKPVVVALNKIDLVRDKAALLPMLERVAGWAEWAAIVPLSAAKGDGAAAV LRELAGLLPQGPAIFPEDMITDLSERFLVSELIREKVFALTNQELPYSTAVTIDEFIE PQNQRGVVAITATIHVERQGQKGILIGKGGGMLKKIGASARLDIETMLGQKVYLDLFV RVEPKWSSQAHGLRKLGYEE" misc_feature 815252..816133 /locus_tag="Deba_0716" /note="GTPase Era; Reviewed; Region: era; PRK00089" /db_xref="CDD:178854" misc_feature 815258..815755 /locus_tag="Deba_0716" /note="Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit...; Region: Era; cd04163" /db_xref="CDD:133363" misc_feature 815279..815302 /locus_tag="Deba_0716" /note="G1 box; other site" /db_xref="CDD:133363" misc_feature order(815285..815305,815345..815347,815357..815365, 815429..815431,815606..815611,815615..815617, 815699..815704) /locus_tag="Deba_0716" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133363" misc_feature order(815324..815326,815330..815374) /locus_tag="Deba_0716" /note="Switch I region; other site" /db_xref="CDD:133363" misc_feature 815363..815365 /locus_tag="Deba_0716" /note="G2 box; other site" /db_xref="CDD:133363" misc_feature order(815417..815434,815492..815497) /locus_tag="Deba_0716" /note="Switch II region; other site" /db_xref="CDD:133363" misc_feature 815420..815431 /locus_tag="Deba_0716" /note="G3 box; other site" /db_xref="CDD:133363" misc_feature 815606..815617 /locus_tag="Deba_0716" /note="G4 box; other site" /db_xref="CDD:133363" misc_feature 815699..815707 /locus_tag="Deba_0716" /note="G5 box; other site" /db_xref="CDD:133363" gene 816207..816878 /locus_tag="Deba_0717" /db_xref="GeneID:9493166" CDS 816207..816878 /locus_tag="Deba_0717" /EC_number="2.3.1.181" /note="COGs: COG0321 Lipoate-protein ligase B; InterPro IPR000544:IPR004143; KEGG: tro:trd_0170 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: B9KXI2 Lipoate-protein ligase B; TIGRFAM: lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B" /codon_start=1 /transl_table=11 /product="lipoate-protein ligase B" /protein_id="YP_003806683.1" /db_xref="GI:302342154" /db_xref="GeneID:9493166" /translation="MNDNDNNIERLDWGVRDYLRALEAMRQRHAARAAGQVADAIICV EHPKVFTLGKRGGREHILLDDEELARQGFSVYHVERGGDVTYHGPGQAVIYPVIDLRA RRMGVRALVEAVAGAICQVTAEYGLTAAWDDERPGVWTHGRKIAAVGLAIPQRVSMHG LAFNVCPDLGHYRLIEACGLSAESTSLCQELGRPVSVTEVHDRLFAALCRQLALAAGS LGAHD" misc_feature 816207..816854 /locus_tag="Deba_0717" /note="Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057" /db_xref="CDD:187213" gene 817048..818430 /locus_tag="Deba_0718" /db_xref="GeneID:9493167" CDS 817048..818430 /locus_tag="Deba_0718" /note="InterPro IPR002781; KEGG: dal:Dalk_2526 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: B8FFF9 Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806684.1" /db_xref="GI:302342155" /db_xref="GeneID:9493167" /translation="MRTKLVPMIALLAATLLWLSPAVLAQEQAAQPAAQAAAAPAGDA GYYSEGMSTHVREAIDKSLADPATAEKFKQAVTPGAEPGYLGIPGAPSVSWIWALLWA VWVGWIFSTVGAFGGIMAGVGHITIFGFGEYASKFGKGAPVNAMVTDSIRVSNQWLAG LSALIGSFKYYRMGRLVAPLGICMAVGAVGGSWLIPAATAGRVSLKDYVGYFGLCVLL LGVLLLRDLTAKGQARQKKAKEAASAFEKKVAEGGDTTEQGVKVVEGSWPLMMVAMLV VLASAVIYKFMGPGKGVAPWTDVWFWACTALACVGGLLTVFVGKVRFTFFGVEFGFKA WLPMLGGAVIAALSSFLGVGGGFLYVPFLTTLAGLPMFLVAGTSSLVVLVGMIVSIFS YMFGKGVVVEWGLIGAELVGVFIGSMVGPATSKFISDKVLRLIFIVLAFYVGLGYTLK GLFGMSLPPF" misc_feature <818137..818382 /locus_tag="Deba_0718" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene 818508..819008 /locus_tag="Deba_0719" /db_xref="GeneID:9493168" CDS 818508..819008 /locus_tag="Deba_0719" /note="KEGG: dde:Dde_0600 hypothetical protein; SPTR: Q315J5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806685.1" /db_xref="GI:302342156" /db_xref="GeneID:9493168" /translation="MPEIFQWLWAWLDAFLIGPYRWPAGAMAGWWLGTSLLAIWATLL GELTMAVGRRVNRRRVTAANDEVTRMHQASINALRQSDKAAWRGINRLGNEAVGKAFF LQVAMGAGSLWPAFMALGWLGARFEGVALAVPLFTDNYIAGFLLCYLPCRLLLAVAKK LWTKRR" gene 819357..820616 /locus_tag="Deba_0720" /db_xref="GeneID:9493169" CDS 819357..820616 /locus_tag="Deba_0720" /note="KEGG: glo:Glov_0940 hypothetical protein; SPTR: B3E5J2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806686.1" /db_xref="GI:302342157" /db_xref="GeneID:9493169" /translation="MRKYFAILAAVVVLVAMSAPAWAQAEAPGSSFTVIGRLWTDFGY QHKSEELATNQYGLTMKGKKRDSYTTNFVNVNANSYWGAKWTSGDKSTGAHAEFAILS KESQNEQVLLRYAYGWWKMGNCKLTAGHTDGVFGSLFAAPGSLLGTSNSGKILFLRWG YLYSGRLPQVRFEYTSPVGLFSIALAQADAEQIVGTESLLYGTSQIGSSQAYFSWPRV DLAYALRLGGFMAIPGFSVSQVRYDGVSSGRDDSVINWVAQLPMTYEIAGFGVKAQIY YGQNIDCEWGQTSTGTLGGQPQAIPVWFGGKVEDTKQLGASIELSYTIDNIKPLIAFG YVDSSNDNWKKVGYTDDNYQRWALMGAVDYKINQYFTVQPEVAYYNYGDRMSSTLNNV SRLVNGSSLSNDYGSEWLFGVAFLFVF" gene 820998..822140 /locus_tag="Deba_0721" /db_xref="GeneID:9493170" CDS 820998..822140 /locus_tag="Deba_0721" /note="COGs: COG0075 serine-pyruvate aminotransferase/ aspartate aminotransferase; InterProIPR015421:IPR015422:IPR015424:IPR000192:IPR 020578; KEGG: tye:THEYE_A0936 soluble hydrogenase 42 kDa subunit; PFAM: aminotransferase class V; SPTR: A3EWA6 Aminotransferase, class V; PFAM: Aminotransferase class-V" /codon_start=1 /transl_table=11 /product="aminotransferase class V" /protein_id="YP_003806687.1" /db_xref="GI:302342158" /db_xref="GeneID:9493170" /translation="MKKVSLLAPGPTPVPSRTLLAMAQPLIHHRSADFLEIFGKVRQG LKKVFQTENEVLTFCSSGTGAMESSVANLLSPGDKAIAIRGGKFGERWTEILKAYGCQ PVNLDVPWGQAVKPADVAKLLADDPSIKAVYVQALETSTGVAHPIEELAKVTAKTDAV LVVDAVSALLAYDIPVDKWGLDVVISGSQKAMMLPPGLGFVSIGPKALKLMESSKLPK FYFSWAKELKNQTQNKGAFTSPVTLFMGLLDIFDYIDELGMQNIFAETGLKSKAFKAA MAALGLTLYSKECPSQALTAVEAPAGVDAQAVVKWLKEKYGIFIAGGQDQAKGKIFRV AHMGHISEFDTLQGISAIEMALAGLGYKFEMGAGVAAAQKVFGEAI" misc_feature 821013..822068 /locus_tag="Deba_0721" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(821181..821186,821193..821195,821400..821402, 821487..821489,821496..821498,821556..821558, 821565..821567) /locus_tag="Deba_0721" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 821565..821567 /locus_tag="Deba_0721" /note="catalytic residue [active]" /db_xref="CDD:99742" gene 822140..823090 /locus_tag="Deba_0722" /db_xref="GeneID:9493171" CDS 822140..823090 /locus_tag="Deba_0722" /EC_number="1.1.1.95" /note="COGs: COG0111 phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR016040:IPR006139:IPR006140; KEGG: dal:Dalk_3379 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: B8FLC2 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase" /codon_start=1 /transl_table=11 /product="D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein" /protein_id="YP_003806688.1" /db_xref="GI:302342159" /db_xref="GeneID:9493171" /translation="MKILVSDPLHEKGVEIFKNEGFEVEVKTGLDPEALKAAMAGVDG LVIRSATKVTAELLAAADSLKVVGRAGTGLDNVDIPACTAKGVIVMNTPGQNSNAAAE LAMGHIFAVSRHIGRGNAGVKQGKWEKKQLRGRELKGKTLGIIGLGNIGRILAELATG CKMSVLGFDPFMDAEAIKARGAEPVSFDDLLARSDYVSIHVPKTKQTAGLFNAATFAK MKDGAILINCARGGIVVEEDLCAALEQGKLAGAALDVFEVEPLPANSRLLYADDVVCT PHLGANTYEAQENVAVAVANQMSRFLKGGPAEFAVNAPAK" misc_feature 822140..823057 /locus_tag="Deba_0722" /note="Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]; Region: SerA; COG0111" /db_xref="CDD:30460" misc_feature 822452..822979 /locus_tag="Deba_0722" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 823491..823901 /locus_tag="Deba_0723" /db_xref="GeneID:9493172" CDS 823491..823901 /locus_tag="Deba_0723" /note="InterPro IPR014995; KEGG: sfu:Sfum_3650 hypothetical protein; PFAM: Domain of unknown function DUF1844; SPTR: A0LPG8 Conserved hypothetical cytosolic protein; PFAM: Domain of unknown function (DUF1844)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806689.1" /db_xref="GI:302342160" /db_xref="GeneID:9493172" /translation="MSADEKGFTVVDRRPFDDQGNARAAEDGDDQAQPAAAADDPACQ ERKAGAKHCQMPPVEFSGLVLSLATAAMTHMGAMPQPDGQGEAEPDLVLARHSIDTLG MLKEKTAGNLSDDERRLLDNILTDLRLAYVQLCR" misc_feature 823659..823883 /locus_tag="Deba_0723" /note="Domain of unknown function (DUF1844); Region: DUF1844; pfam08899" /db_xref="CDD:149837" gene 823925..825361 /locus_tag="Deba_0724" /db_xref="GeneID:9493173" CDS 823925..825361 /locus_tag="Deba_0724" /EC_number="3.4.21.108" /note="COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterProIPR011782:IPR001478:IPR009003:IPR001940:IPR 001254; KEGG: gme:Gmet_1014 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Q39WW8 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family" /codon_start=1 /transl_table=11 /product="protease Do" /protein_id="YP_003806690.1" /db_xref="GI:302342161" /db_xref="GeneID:9493173" /translation="MQKRAVTLALCWALALVLIGPPRLAQAAEAGPQLPSFADLAERV SPAVVNIRIVKTVTGRPLMGLFGRERGQGHPSPEELFERFFRGPGGGGDQPREFKERS LGSGVIIDPEGYVLTNNHVIDDADEIVVRLKGEKELPAKIIGRDAKTDLALIKIDGEK NLPVLPLGDSDKLRVGDWVLAVGNPFGLEHTVTAGIISAKGRDIGAGPYDDFLQTDAS INPGNSGGPLIDLGGAVVGVNTAIAAQGQGIGFAIPVNLAKKIVGQLREKGRVVRGYL GVYFQPVTPELAQQFGLKKPGGALVAEVIADGPAAEGGVKPGDVIVRFNGREVNDWHE LPAMVADTPVGQEVEMTVMRGGDEKDLEITVGELKDGEAQAQAPQRQSEDKLGLSLQE LTPDLAQQLGVGASKGLVVTGAREGGPAAEAGLRKGDVIVEADRKAVETLKDFQGLVD GLKPGDGLLVLYQREGRSLYTVIKAPKE" misc_feature 824027..825343 /locus_tag="Deba_0724" /note="periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037" /db_xref="CDD:162670" misc_feature 824240..824644 /locus_tag="Deba_0724" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" misc_feature 824744..825013 /locus_tag="Deba_0724" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature order(824747..824758,824762..824764,824915..824920, 824927..824932) /locus_tag="Deba_0724" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" misc_feature 825080..825343 /locus_tag="Deba_0724" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature order(825080..825088,825092..825094,825245..825250, 825257..825262) /locus_tag="Deba_0724" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" gene 825364..826227 /locus_tag="Deba_0725" /db_xref="GeneID:9493174" CDS 825364..826227 /locus_tag="Deba_0725" /note="COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; InterProIPR004424:IPR014721:IPR020568:IPR006204:IPR 013750; KEGG: gme:Gmet_2849 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; SPTR: Q39RQ7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2C-methyl-D-erythritolkinase" /protein_id="YP_003806691.1" /db_xref="GI:302342162" /db_xref="GeneID:9493174" /translation="MAKLTLAAPAKVNLSLRIIGRRADGYHELLTLMQPLSLADEVSV ELRAGGVALACDDERLIENNLMTRAAEAYFAALGAPPGVRLGLKKRIPVAAGLGGGSS DAAAVLLALNALHGGALDPARLVALAAGLGADVAFFLAGQTALCSGVGEIVHPLPVFP LLHYVVVNPGFAVPTAWVYKQFDLSWTSQNNCNKIICLPCAGHALCDILVNDLEGVTL TAYPQLVDVKRALAEAGAVGALMSGSGPSIFGVFADEGSATKAAHNLAARGQWWVEAC RGVDACEGCCC" misc_feature 825364..826200 /locus_tag="Deba_0725" /note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: PRK14614" /db_xref="CDD:173078" misc_feature <826024..826170 /locus_tag="Deba_0725" /note="GHMP kinases C terminal; Region: GHMP_kinases_C; pfam08544" /db_xref="CDD:192062" gene 826236..826520 /locus_tag="Deba_0726" /db_xref="GeneID:9493175" CDS 826236..826520 /locus_tag="Deba_0726" /note="COGs: COG2088 Uncharacterized protein involved in the regulation of septum location; InterPro IPR007170; KEGG: ank:AnaeK_0129 regulatory protein SpoVG; PFAM: SpoVG family protein; SPTR: B4ULC5 Putative septation protein spoVG; PFAM: SpoVG" /codon_start=1 /transl_table=11 /product="SpoVG family protein" /protein_id="YP_003806692.1" /db_xref="GI:302342163" /db_xref="GeneID:9493175" /translation="MDVTEVRVFPVEEDRLKAYATLTFDHCFLVRDIKVIHGNKGLFV AMPSKKRKDGSYQDIAHPLNSETRRMIEQRVLDEYNRVLEEGPDVAGMAS" misc_feature 826236..826514 /locus_tag="Deba_0726" /note="SpoVG; Region: SpoVG; cl00915" /db_xref="CDD:186257" gene 826551..826625 /locus_tag="Deba_R0016" /db_xref="GeneID:9493176" tRNA 826551..826625 /locus_tag="Deba_R0016" /product="tRNA-Gln" /db_xref="GeneID:9493176" gene 826713..827654 /locus_tag="Deba_0727" /db_xref="GeneID:9493177" CDS 826713..827654 /locus_tag="Deba_0727" /EC_number="2.7.6.1" /note="COGs: COG0462 phosphoribosylpyrophosphate synthetase; InterPro IPR005946:IPR000836; KEGG: geo:Geob_1566 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: ribose-phosphate diphosphokinase; SPTR: Q1NQA1 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase" /codon_start=1 /transl_table=11 /product="ribose-phosphate pyrophosphokinase" /protein_id="YP_003806693.1" /db_xref="GI:302342164" /db_xref="GeneID:9493177" /translation="MFNKLKVFTGNSNPALAEEICHYLHLPLSQAVVRRFSDGEILVE IGENVRGSDVFVIQSTCPPVNDHLMELLIMIDAFRRASARRITAVIPYYGYARQDRKV APRAPISAKLVADLITTAGAGRVLCMDLHAGQIGGFFNIPVDHLFATPVILDYLRTQL RGEAVIVSPDAGGVERARAIAKRLSAGLAIIDKRREKANVAQAMNIIGEVDGKMTVIL DDMIDTAGTLTEAARALIDHGAKEVWACSSHAVLSGPAVTRIKESSITRVVTTNTVPM REEAKNTGKISSLSVAQILGEAIRRIHMEDSVSSLFV" misc_feature 826713..827648 /locus_tag="Deba_0727" /note="Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]; Region: PrsA; COG0462" /db_xref="CDD:30810" misc_feature 826725..827648 /locus_tag="Deba_0727" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 827778..828386 /locus_tag="Deba_0728" /db_xref="GeneID:9493178" CDS 827778..828386 /locus_tag="Deba_0728" /note="COGs: COG1825 ribosomal protein L25 (general stress protein Ctc); InterProIPR001021:IPR020056:IPR020057:IPR011035:IPR 020055; KEGG: gau:GAU_1218 50S ribosomal protein L25; PFAM: ribosomal protein L25-like; SPTR: B9XFD6 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form" /codon_start=1 /transl_table=11 /product="ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5" /protein_id="YP_003806694.1" /db_xref="GI:302342165" /db_xref="GeneID:9493178" /translation="MKQIPLAAARRETTGKGAARQMRAAGKIPAVVYSAGKPAENLMV EAREVDRLLRQSGGGSAFLSLSVADEPARLAMLQEMQFDYLGKKVIHIDFHQIKADEE ISVEAPIELVGEAKGAAEGGLINQNLYSVLLRGRIADIPDAVVVDISGLDLGDNIHST DLTLPQNVAMVSEESVLVVACVAPNTGGDSGAEEEGGEAEEE" misc_feature 827793..828065 /locus_tag="Deba_0728" /note="Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this...; Region: Ribosomal_L25_TL5_CTC; cd00495" /db_xref="CDD:88604" misc_feature order(827808..827810,827832..827840,827844..827846, 827874..827882,827892..827894,828009..828014, 828018..828020,828048..828050,828054..828056, 828060..828062) /locus_tag="Deba_0728" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88604" misc_feature order(827880..827882,827958..827960,827997..827999, 828009..828011,828060..828065) /locus_tag="Deba_0728" /note="CTC domain interface; other site" /db_xref="CDD:88604" misc_feature order(828003..828008,828015..828017,828027..828029, 828033..828038,828060..828062) /locus_tag="Deba_0728" /note="L16 interface [polypeptide binding]; other site" /db_xref="CDD:88604" gene 828392..828994 /locus_tag="Deba_0729" /db_xref="GeneID:9493179" CDS 828392..828994 /locus_tag="Deba_0729" /EC_number="3.1.1.29" /note="COGs: COG0193 peptidyl-tRNA hydrolase; InterPro IPR001328:IPR018171; KEGG: sfu:Sfum_3654 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: A0LPH2 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="YP_003806695.1" /db_xref="GI:302342166" /db_xref="GeneID:9493179" /translation="MFGRARAEAQTALVVGLGNPGPRYATTRHNAGFMVVEELARRHG VGLVKSGHQSIWGKGLVEGRPVIAALPQTYMNLSGEAVAALLSYYRLPPTQLVVAHDD LDLELGRLKVAARGGAAGHKGVGSIISLLGTDEFARLRFGVGRPRHDEPIEQFVLNGF YADQRELGQKMVQVAADCLEVILGKGLAEAMQRFHRPFSN" misc_feature 828428..828940 /locus_tag="Deba_0729" /note="Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462" /db_xref="CDD:73208" misc_feature order(828446..828448,828476..828478,828611..828616, 828692..828694,828752..828754) /locus_tag="Deba_0729" /note="putative active site [active]" /db_xref="CDD:73208" misc_feature 828476..828478 /locus_tag="Deba_0729" /note="catalytic residue [active]" /db_xref="CDD:73208" gene 829009..831105 /locus_tag="Deba_0730" /db_xref="GeneID:9493180" CDS 829009..831105 /locus_tag="Deba_0730" /EC_number="3.6.1.1" /note="COGs: COG3808 Inorganic pyrophosphatase; InterPro IPR004131; KEGG: pca:Pcar_2001 membrane-bound proton-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: C1SKP4 Vacuolar-type H(+)-translocating pyrophosphatase; TIGRFAM: V-type H(+)-translocating pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase" /codon_start=1 /transl_table=11 /product="V-type H(+)-translocating pyrophosphatase" /protein_id="YP_003806696.1" /db_xref="GI:302342167" /db_xref="GeneID:9493180" /translation="MEFWSGLTAYAPALAVVGLVVAFLIFQYVKKQPNGNPLMQKLEA QIHEGAMAFLKKEYSLLVIFAAVVFALLWWQTGIMTAVCFASGALCSVAAGYSGMTAA TRGNSRTAAAANEFGQAKALNVSYFSGSVMGLAVASLGLLGVGLWFDYFMGGDSADMA AYLKAFEAINGFAMGASSIALFARVGGGIYTKAADVGADLVGKVEAGIPEDDPRNPGV IADNVGDNVGDIAGMGADIFESYVGSVIATIAIAATSVMTAPEVLKIFPEGVAGTNMT MMVLPLLVVMAGLVSSFVGVLSIKVFEKGDPAHALHNTTFVAGAIFAVLCWFIIKGLG MNANPWWAIISGLVVGMIIGKIAEYYTAKAPVHYIAENSETGPATVVITGLAVGMRST YLPILGICVAIFVSYALAGMFGIGLSAVGMLATVGVTMTVDAYGPIADNAGGISEMAG LGPETRKITDSLDALGNTTAAIGKGFAIGSAALTALALFSAYGQSAGLTAIGINITKP IVVIGVFIGAIVPMLAAAMTMTSVGKAAFQMVEEIRRQFREIPGLLEGKEGAEPDSAT CVSIATGAALKEMIAPGIMAVVVPVLVGFIFGKEALGGALMGATVMGVFMALFMSNAG GAWDNAKKYIEAGNFGGKGSANHKAAVVGDTVGDPFKDTSGPAMNILIKLMSIVSLVL APVLAGHAGWLEGLFK" misc_feature 829093..831087 /locus_tag="Deba_0730" /note="Inorganic pyrophosphatase [Energy production and conversion]; Region: OVP1; cl11452" /db_xref="CDD:187048" misc_feature 829093..831081 /locus_tag="Deba_0730" /note="membrane-bound proton-translocating pyrophosphatase; Validated; Region: hppA; PRK00733" /db_xref="CDD:179102" gene 831282..831767 /locus_tag="Deba_0731" /db_xref="GeneID:9493181" CDS 831282..831767 /locus_tag="Deba_0731" /note="COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: dal:Dalk_3372 transcriptional regulator, CarD family; PFAM: transcription factor CarD; SPTR: B8FLB5 Transcriptional regulator, CarD family; PFAM: CarD-like/TRCF domain" /codon_start=1 /transl_table=11 /product="CarD family transcriptional regulator" /protein_id="YP_003806697.1" /db_xref="GI:302342168" /db_xref="GeneID:9493181" /translation="MFDLGQLAVYPAHGVGRIEAVEEKTIGGAQQCFYILRILENDMI IMVPTANAGAVGLRPIIPTEEVPQVLSILRDHDVIIENQTWNRRYRDYMSKIKTGSVY EVAEVLRDLFILKSDKELSFGERKMLDTARNLLVKELSIAQQQTEDVVAAQVEGIFCH C" misc_feature 831282..831722 /locus_tag="Deba_0731" /note="CarD-like/TRCF domain; Region: CarD_TRCF; cl00588" /db_xref="CDD:193879" gene 831809..832762 /locus_tag="Deba_0732" /db_xref="GeneID:9493182" CDS 831809..832762 /locus_tag="Deba_0732" /note="COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterProIPR006225:IPR002942:IPR020103:IPR006145:IPR 006224; KEGG: acp:A2cp1_2063 pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: B8J8A5 Pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family" /codon_start=1 /transl_table=11 /product="pseudouridine synthase, RluA family" /protein_id="YP_003806698.1" /db_xref="GI:302342169" /db_xref="GeneID:9493182" /translation="MRQLFFSSPPEAAAQRLDVALLGLLGDDFSRAQVQRLLRDGLVL VDGQAAKAAQKLRPGQAIAVRLPDPEPSELIPMAMDLAILHEDEDLIIINKPPGLVVH PSPGHAEGTLVHGLLHHCGGLAEVGGKLRPGIVHRLDKDTSGALVAAKNDRAHRGLVA RFAAGRVQKEYLALVHGRPAKRGRVDSGIGRHPGDRKRMSSQGSRTKPALSQWRVCRS FGEASLLRVNIHTGRTHQIRVHLSEAGHPVLGDQTYGARRRDAALPDPVAAALRQAGR QMLHAVVLSFEHPISAQIIHVTAPLPADYRAVLRACEAASR" misc_feature 831836..832741 /locus_tag="Deba_0732" /note="pseudouridine synthase, RluA family; Region: rluA_subfam; TIGR00005" /db_xref="CDD:161659" misc_feature 831851..832090 /locus_tag="Deba_0732" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature order(831854..831856,831893..831898,831902..831907, 831911..831916,831923..831928,831932..831934, 831953..831973,831977..831979) /locus_tag="Deba_0732" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature 832076..832666 /locus_tag="Deba_0732" /note="PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF...; Region: PseudoU_synth_RluCD_like; cd02869" /db_xref="CDD:30029" misc_feature order(832214..832225,832520..832522) /locus_tag="Deba_0732" /note="active site" /db_xref="CDD:30029" gene 832759..833382 /locus_tag="Deba_0733" /db_xref="GeneID:9493183" CDS 832759..833382 /locus_tag="Deba_0733" /EC_number="2.7.1.24" /note="COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: pjd:Pjdr2_1526 dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: C6CWY3 Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase" /codon_start=1 /transl_table=11 /product="dephospho-CoA kinase" /protein_id="YP_003806699.1" /db_xref="GI:302342170" /db_xref="GeneID:9493183" /translation="MIAVGLTGGIASGKSTVAAMFVALGAHLVDTDVLARQAVAPGGP ALARIAAEFGPEALDASGNLDRAAMRGLAFGDQAARQRLEAIVHPVVAELAGQAMERY AAQDPGGVVLVDVPLLFEVGWDKLFARTVLVYAPAEVQLRRLMARDHCDEAAARVALQ AQMPIEQKRKLAHFVIDNSGDMDKTQSQVVSVWRELCALATAAPSRT" misc_feature 832759..833358 /locus_tag="Deba_0733" /note="Dephospho-CoA kinase [Coenzyme metabolism]; Region: CoaE; COG0237" /db_xref="CDD:30586" misc_feature 832768..833307 /locus_tag="Deba_0733" /note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022" /db_xref="CDD:30195" misc_feature order(832777..832779,832852..832854,833020..833022, 833104..833109,833242..833244) /locus_tag="Deba_0733" /note="CoA-binding site [chemical binding]; other site" /db_xref="CDD:30195" misc_feature order(832780..832788,832795..832800,833185..833187, 833290..833292) /locus_tag="Deba_0733" /note="ATP-binding [chemical binding]; other site" /db_xref="CDD:30195" gene 833540..834946 /locus_tag="Deba_0734" /db_xref="GeneID:9493184" CDS 833540..834946 /locus_tag="Deba_0734" /note="COGs: COG1158 Transcription termination factor; InterProIPR004665:IPR011129:IPR003593:IPR016027:IPR 011112:IPR011113:IPR000194; KEGG: geo:Geob_0681 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; Rho termination factor RNA-binding; Rho termination factor domain protein; SMART: Cold shock protein; ATPase AAA; SPTR: C6MMV4 Transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho" /codon_start=1 /transl_table=11 /product="transcription termination factor Rho" /protein_id="YP_003806700.1" /db_xref="GI:302342171" /db_xref="GeneID:9493184" /translation="MSNTENNSNKPAERRPRAAKRQAAATPPPSVNPEACSNGNGSYE VDASGGRMNIIELKVKPIAELTAMARTFNIEGAAGMRKQELIFALLTAQAERNGAIYG EGVLEILPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLRTGDTISGQIRPPKEGER YFALLKVEKINMEPPEVARDKILFDNLVPLYPDERIRLEVEAQPKNFSIRVMDLMTPI GKGQRGLIVAPPRTGKTMLLQNIANALAANHPEVTLIVLLIDERPEEVTDMQRSVKGE VISSTFDEPAQRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPPSGKI LSGGVDSNALHRPKRFFGAARNIEDGGSLTIIATALIETGSRMDEVIFEEFKGTGNME IHLDRKLSDKRVFPAIDINRSGTRKEELLLPESDLNRIWILRKLLGPLTAVDSMEFLL EKLQGTKSNTEFLDSMSR" misc_feature 833693..834943 /locus_tag="Deba_0734" /note="transcription termination factor Rho; Provisional; Region: rho; PRK09376" /db_xref="CDD:181809" misc_feature 833705..833833 /locus_tag="Deba_0734" /note="Rho termination factor, N-terminal domain; Region: Rho_N; pfam07498" /db_xref="CDD:191758" misc_feature 833843..834046 /locus_tag="Deba_0734" /note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent...; Region: Rho_CSD; cd04459" /db_xref="CDD:88425" misc_feature order(833858..833860,833864..833866,833876..833878, 833882..833884,833888..833890,833924..833926, 833930..833932,834005..834007,834014..834022) /locus_tag="Deba_0734" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88425" misc_feature 834155..834901 /locus_tag="Deba_0734" /note="Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of...; Region: rho_factor; cd01128" /db_xref="CDD:29994" misc_feature order(834206..834208,834539..834541,834572..834574, 834581..834586,834593..834595,834602..834604, 834611..834613,834686..834691,834695..834709, 834713..834715,834785..834790,834830..834832, 834842..834844) /locus_tag="Deba_0734" /note="multimer interface [polypeptide binding]; other site" /db_xref="CDD:29994" misc_feature 834221..834244 /locus_tag="Deba_0734" /note="Walker A motif; other site" /db_xref="CDD:29994" misc_feature order(834230..834232,834236..834247,834752..834754) /locus_tag="Deba_0734" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29994" misc_feature 834470..834484 /locus_tag="Deba_0734" /note="Walker B motif; other site" /db_xref="CDD:29994" gene 835038..835334 /locus_tag="Deba_0735" /db_xref="GeneID:9493185" CDS 835038..835334 /locus_tag="Deba_0735" /note="COGs: COG0254 ribosomal protein L31; InterPro IPR002150; KEGG: dol:Dole_0471 ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: A8ZTL7 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; TIGRFAM: ribosomal protein L31" /codon_start=1 /transl_table=11 /product="ribosomal protein L31" /protein_id="YP_003806701.1" /db_xref="GI:302342172" /db_xref="GeneID:9493185" /translation="MKNDIHPKYNMVKVQCACGNEFISGSTKGAIRVEICAACHPFFT GKQKLVDSAGRVERFYKKYAHLQQYSGKAEELEAERLAKAEADAKRREAEGAEA" misc_feature 835038..835229 /locus_tag="Deba_0735" /note="Ribosomal protein L31; Region: Ribosomal_L31; cl00377" /db_xref="CDD:185951" gene 835361..836299 /locus_tag="Deba_0736" /db_xref="GeneID:9493186" CDS 835361..836299 /locus_tag="Deba_0736" /note="COGs: COG3872 metal-dependent protein; InterPro IPR010787; KEGG: dma:DMR_31290 hypothetical membrane protein; PFAM: protein of unknown function DUF1385; SPTR: C4XIQ2 Hypothetical membrane protein; PFAM: Protein of unknown function (DUF1385)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806702.1" /db_xref="GI:302342173" /db_xref="GeneID:9493186" /translation="MKPAAVGGQAVIEGVMMKAPERLCVAVRRPDGQILVKNDPFNGL ARRWPALGWPFLRGPVILGETLVLGMKALSFSAQQAMEDEGEPVSPWAMALTMLVAVV VGVGLFVALPHLAALWLGRLSATGFDETSLWFHLIDGVIKVGLFLAYIWAIALMPDIK RVFEYHGAEHKAIYCYESGGELTVEAARGYPRLHPRCGTAFILVVLVVSIFFFAALFP LLPRLAEAAWLNQALQILLKVGLMLPIAGLSYEIIRRAGDRGARGVWGALLWPGLQLQ RMTTREPDDRQIEIALCALKAAVATDRAEKSSITVL" misc_feature 835517..836257 /locus_tag="Deba_0736" /note="Protein of unknown function (DUF1385); Region: DUF1385; cl01595" /db_xref="CDD:154493" gene 836310..837395 /locus_tag="Deba_0737" /db_xref="GeneID:9493187" CDS 836310..837395 /locus_tag="Deba_0737" /note="COGs: COG0216 Protein chain release factor A; InterPro IPR004373:IPR005139:IPR000352; KEGG: dma:DMR_31280 peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; SPTR: C4XIQ1 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1" /codon_start=1 /transl_table=11 /product="peptide chain release factor 1" /protein_id="YP_003806703.1" /db_xref="GI:302342174" /db_xref="GeneID:9493187" /translation="MAMSPDLKARLEEVEARFNAVERELADPNIVANQENFMKRSKEH AELSQLVECFRSYNKYEQELEQNRLLMADDDEELAALAGVEVEQAETALVDLEQRMRL LLLPQDPRDEKNVVLEIRAGTGGDEAALFAAELLRMYLRYAELKRWKTEILSQHPTNA GGFKEVIALITGRGAYSQLKYESGAHRVQRVPATESQGRVHTSAVTVAVLPEADEVEV DIKPEELRIDYFRSSGPGGQHVNTTDSAVRITHLPTGLVVSCQDEKSQHKNKAKALKV LAARLLEKMEQEQQAALAANRRSQVGSGDRSERIRTYNFPQGRVTDHRIGLTIYKLEE VLVGELELIIPHLVAYFQAEALKSSAA" misc_feature 836328..837392 /locus_tag="Deba_0737" /note="peptide chain release factor 1; Validated; Region: prfA; PRK00591" /db_xref="CDD:179074" misc_feature <836592..836855 /locus_tag="Deba_0737" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" misc_feature 836940..837281 /locus_tag="Deba_0737" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" gene 837402..838277 /locus_tag="Deba_0738" /db_xref="GeneID:9493188" CDS 837402..838277 /locus_tag="Deba_0738" /EC_number="2.1.1.72" /note="COGs: COG2890 methylase of polypeptide chain release factors; InterPro IPR004556:IPR019874:IPR007848; KEGG: mxa:MXAN_4908 protein methyltransferase HemK; PFAM: methyltransferase small; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q93NC8 Protoporphyrinogen oxidase HemK; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific" /codon_start=1 /transl_table=11 /product="protein-(glutamine-N5) methyltransferase, release factor-specific" /protein_id="YP_003806704.1" /db_xref="GI:302342175" /db_xref="GeneID:9493188" /translation="MEELWTIRRLGQWATEYLTRHGVESPRSSAELLLSQVLGLERIG LYLDFDRPLTKDELAGFKALLLRRRAHEPVAYIRGKREFFGLELAVGPGVLIPRPETE LLVERGVALLAQAERPKILDLCTGGGAVALALASQLPTARVLACDISAQALAYARQNA QALGLEERVSFLQGPLWEPVAATGGFFDLITANPPYVTSGEWPCLPPDVRDHEPRLAL EAGPEGLDVIGPIIVGSRAFLRPLAWLLVEIGAGQGPAVMALAQAAGIFSRIELLRDL AGMDRVLACERGDYG" misc_feature 837414..838262 /locus_tag="Deba_0738" /note="N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328" /db_xref="CDD:181780" misc_feature 837756..>837989 /locus_tag="Deba_0738" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(837768..837788,837840..837845,837921..837929, 837978..837980) /locus_tag="Deba_0738" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 838270..839544 /locus_tag="Deba_0739" /db_xref="GeneID:9493189" CDS 838270..839544 /locus_tag="Deba_0739" /EC_number="2.5.1.7" /note="COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR005750:IPR001986:IPR013792; KEGG: gsu:GSU3102 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: Q39YP9 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine1- carboxyvinyltransferase" /protein_id="YP_003806705.1" /db_xref="GI:302342176" /db_xref="GeneID:9493189" /translation="MDKLIIEGGRPLVGRVRVSGAKNATLPLMAACLLTGGRNRLRNV PNLRDVGTMAALLRELGAHVDERPGELTIDTARAEGDECPYELVKTMRASVLALGPMV ARSGRGRVSLPGGCAIGERPIDQHLKGLEAMGCRIELEGGYVQARAKRLKGAEITFDL ITVTGTENIMMAATLAQGRTVLRNAAREPEVVDLAQALNGAGARIEGAGDSIVTIDGV DGLGSIDHAVMPDRIEAGTFMMAAGVTRGELTIENAQMEHLTAVVAKLKEAGLRFQQT PKGLVVSARRAPRPVSVITGPYPGFPTDLQAQFMALMTLCNGSAVIQETIFENRLMHV PELRRLGAEIECGGNTAVVKGVRKLSGAPVMATDLRASACLVLAGLAAGGQTHISRVY HLDRGYERIDQKLINAGATVRRESEPGPGKAH" misc_feature 838270..839514 /locus_tag="Deba_0739" /note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated; Region: PRK09369" /db_xref="CDD:181804" misc_feature 838303..839490 /locus_tag="Deba_0739" /note="UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555" /db_xref="CDD:30128" misc_feature order(838321..838332,838951..838962) /locus_tag="Deba_0739" /note="hinge; other site" /db_xref="CDD:30128" misc_feature order(838336..838338,838543..838545,838555..838557, 838630..838647,838747..838749,838756..838761, 839179..839181) /locus_tag="Deba_0739" /note="active site" /db_xref="CDD:30128" gene 839721..840542 /locus_tag="Deba_0740" /db_xref="GeneID:9493190" CDS 839721..840542 /locus_tag="Deba_0740" /note="COGs: COG0052 ribosomal protein S2; InterPro IPR005706:IPR001865:IPR018130; KEGG: gur:Gura_3733 30S ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: A5G7W8 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type" /codon_start=1 /transl_table=11 /product="ribosomal protein S2" /protein_id="YP_003806706.1" /db_xref="GI:302342177" /db_xref="GeneID:9493190" /translation="MAYVTMRQLLEAGVHFGHHTGRWNPKMRGYIFGARNGIHIVDLQ KTVKLFRDAYDAVVKAVSRGGDVLFVGTKRQAADIVMEEARRCGMYYVNHRWLGGMLT NFQTIKKSIDRYKWLEGIIADGTIDNYPKKEAIGLRRELEKLELNLGGIKDMTRLPSV IFIVDIRKERIAVSEAKRLGIPTVAIVDTNCDPDNIDYVIPGNDDAIRAIRLMCSKVA EATMEGLALRDQRGADRAARADGVDMQMEVPGLTVGRADEEGGPEIIRKGDGPEA" misc_feature 839745..840380 /locus_tag="Deba_0740" /note="Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425" /db_xref="CDD:100106" misc_feature order(839793..839798,839823..839831,840003..840005, 840009..840017,840024..840029,840243..840245, 840252..840254) /locus_tag="Deba_0740" /note="rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:100106" misc_feature order(840249..840254,840258..840260,840300..840311) /locus_tag="Deba_0740" /note="S8 interaction site; other site" /db_xref="CDD:100106" misc_feature 840354..840371 /locus_tag="Deba_0740" /note="putative laminin-1 binding site; other site" /db_xref="CDD:100106" gene 840635..841234 /locus_tag="Deba_0741" /db_xref="GeneID:9493191" CDS 840635..841234 /locus_tag="Deba_0741" /note="COGs: COG0264 Translation elongation factor Ts; InterProIPR001816:IPR014039:IPR009060:IPR000449:IPR 018101; KEGG: sfu:Sfum_1779 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; SPTR: Q1NXW3 Elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts" /codon_start=1 /transl_table=11 /product="translation elongation factor Ts" /protein_id="YP_003806707.1" /db_xref="GI:302342178" /db_xref="GeneID:9493191" /translation="MEISVADIKKLREKTNAGMMDCKKALTECGGDMEKAVDWLRQKG LSVAAKRADREALEGQVACYIHAGGKLGVMVEVNCETDFSAKTDEFSQFARDVAMHIA AVNPLCVSEEQLDPAVVERERAIYRQQALEQGKPEKILDKIIEGKMAKFVSESCLLSQ AFVKDTDKTIADLLNELRAKTGENVQIRRFARFVLGEQA" misc_feature 840635..841225 /locus_tag="Deba_0741" /note="elongation factor Ts; Reviewed; Region: tsf; PRK12332" /db_xref="CDD:183447" misc_feature 840650..840754 /locus_tag="Deba_0741" /note="Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been...; Region: UBA; cl00153" /db_xref="CDD:193684" misc_feature 840800..841225 /locus_tag="Deba_0741" /note="Elongation factor TS; Region: EF_TS; pfam00889" /db_xref="CDD:189759" gene 841383..842102 /locus_tag="Deba_0742" /db_xref="GeneID:9493192" CDS 841383..842102 /locus_tag="Deba_0742" /EC_number="2.7.4.22" /note="COGs: COG0528 Uridylate kinase; InterPro IPR015963:IPR001048:IPR011817; KEGG: ank:AnaeK_0291 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: B8J9V8 Uridylate kinase; TIGRFAM: uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase" /codon_start=1 /transl_table=11 /product="uridylate kinase" /protein_id="YP_003806708.1" /db_xref="GI:302342179" /db_xref="GeneID:9493192" /translation="MARKAAYNRVLLKISGEALMGEADFGISPQVLQFVADELVQALA CEVQVGVVIGGGNIFRGVSDSARGMDRVQADHMGMLATVINSLALQDAMEQRDVPTRV MSAISVPQAAEPYIRRRAVRHMEKNRLVIFAAGTGNPFFSTDTAAALRAKEIGAEVLL KATKVDGIYDCDPVKNPGANKLELLTYDDVLTRHLKFMDATAISLAGDNDLPVIVFDL MKPGNIRRVLMGEQLGSRVEG" misc_feature 841407..842096 /locus_tag="Deba_0742" /note="UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control...; Region: AAK_UMPK-PyrH-Ec; cd04254" /db_xref="CDD:58620" misc_feature order(841419..841421,841428..841433,841542..841550, 841809..841814,841869..841874,841881..841883, 841887..841889,841893..841898) /locus_tag="Deba_0742" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58620" misc_feature order(841542..841550,841560..841565,841605..841607, 841614..841619,841788..841790,841794..841799, 841803..841811) /locus_tag="Deba_0742" /note="uridine monophosphate binding site [chemical binding]; other site" /db_xref="CDD:58620" misc_feature order(841581..841586,841608..841613,841632..841634, 841653..841655,841683..841685,841725..841727, 841737..841739,841746..841748,841764..841766, 841788..841790,841794..841802,841827..841829, 841836..841841,842007..842009) /locus_tag="Deba_0742" /note="homohexameric interface [polypeptide binding]; other site" /db_xref="CDD:58620" gene 842105..842662 /locus_tag="Deba_0743" /db_xref="GeneID:9493193" CDS 842105..842662 /locus_tag="Deba_0743" /note="COGs: COG0233 ribosome recycling factor; InterPro IPR002661; KEGG: dal:Dalk_3162 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: B8FGE3 ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; TIGRFAM: ribosome recycling factor" /codon_start=1 /transl_table=11 /product="ribosome recycling factor" /protein_id="YP_003806709.1" /db_xref="GI:302342180" /db_xref="GeneID:9493193" /translation="MIDDTKNEAKERMHKAIEALKRDFSRVRTGRATPTILDGVRADY YGQPTPLNQMAGISVPEARLIVIQPWDPKSCELIEKAILASDLGLTPQSDGKVVRINF PPLTQERRKDLAKLVRKMAEEAKVAVRAARRDANEMLKEFKKEGEISEDDAFRGQEEI QKTTDDFIKKVDETLAEKEKEIMEF" misc_feature 842117..842653 /locus_tag="Deba_0743" /note="Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are 'recycled' and ready for another round of...; Region: RRF; cd00520" /db_xref="CDD:29621" misc_feature order(842189..842200,842408..842419) /locus_tag="Deba_0743" /note="hinge region; other site" /db_xref="CDD:29621" gene 842691..843470 /locus_tag="Deba_0744" /db_xref="GeneID:9493194" CDS 842691..843470 /locus_tag="Deba_0744" /EC_number="2.5.1.31" /note="COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441:IPR018520; KEGG: ade:Adeh_3585 undecaprenyl pyrophosphate synthetase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Q2IFJ1 Undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase" /codon_start=1 /transl_table=11 /product="undecaprenyl diphosphate synthase" /protein_id="YP_003806710.1" /db_xref="GI:302342181" /db_xref="GeneID:9493194" /translation="MTKEPNLSDLESRLDKSSLPRHVAVIMDGNGRWAQRQGLPRVRG HEAGAESVRAVVRTCRRLGVEALTLYAFSEENWARPKAEVAALWKLLGRFLKQERAEM LAQGIRLNAIGSLHKLPTATAQALRKVMADTAGGRQMVLTLALSYGGRQELTEAAHRL CRRVAAGQLRPEDVDEAAVAASLYTHDLPDVDFLIRTSGELRVSNFLLWQMAYAEFYF TELHFPDFREAALVEALTEYARRQRRFGQTGQQVEEAARGR" misc_feature 842748..843407 /locus_tag="Deba_0744" /note="Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cl00230" /db_xref="CDD:193723" misc_feature 842772..842774 /locus_tag="Deba_0744" /note="catalytic residue [active]" /db_xref="CDD:29593" misc_feature 842775..842786 /locus_tag="Deba_0744" /note="putative FPP diphosphate binding site; other site" /db_xref="CDD:29593" misc_feature order(842895..842909,842949..842954,842958..842966, 843045..843047,843066..843068,843111..843113, 843117..843119) /locus_tag="Deba_0744" /note="putative FPP binding hydrophobic cleft; other site" /db_xref="CDD:29593" misc_feature order(843138..843140,843162..843164,843174..843176, 843183..843185,843210..843212,843291..843296, 843303..843305,843315..843317,843324..843326, 843336..843338) /locus_tag="Deba_0744" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29593" misc_feature order(843276..843278,843294..843296) /locus_tag="Deba_0744" /note="putative IPP diphosphate binding site; other site" /db_xref="CDD:29593" gene 843460..844287 /locus_tag="Deba_0745" /db_xref="GeneID:9493195" CDS 843460..844287 /locus_tag="Deba_0745" /note="COGs: COG4589 CDP-diglyceride synthetase/phosphatidate cytidylyltransferase; InterPro IPR000374; KEGG: bgl:bglu_1g12770 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: Q1NXW7 phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family" /codon_start=1 /transl_table=11 /product="phosphatidate cytidylyltransferase" /protein_id="YP_003806711.1" /db_xref="GI:302342182" /db_xref="GeneID:9493195" /translation="MAAEPVKSRWADLGLRVATGLVLFVGIVLLIMLAPLAALAGLVA LVAMLGMGELLRMTTAGRWGLAEFAALGLAAALPLCALLGGAGLAAGLLVALLASSIA AVLAGDDLDLAWDKMTRRFWDVAYCGGLLACVLPLAALPGGRVLVIFCIISVAAADVG AYFAGHQFGRRKLAPRISPGKTIEGLIGGALLSFAVGGAFAALWLADTIWWLGGLVGL VLGLVSVGGDLLESSLKRQAGVKDSSGLLPGHGGVLDRIDGHVTAFPLFLLIRVIWW" misc_feature <843892..844281 /locus_tag="Deba_0745" /note="Cytidylyltransferase family; Region: CTP_transf_1; cl00347" /db_xref="CDD:185926" gene 844284..845450 /locus_tag="Deba_0746" /db_xref="GeneID:9493196" CDS 844284..845450 /locus_tag="Deba_0746" /EC_number="1.1.1.267" /note="COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR016040:IPR013512:IPR013644; KEGG: pvi:Cvib_0138 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: A4SCF3 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" /protein_id="YP_003806712.1" /db_xref="GI:302342183" /db_xref="GeneID:9493196" /translation="MKKRLAILGSTGSIGQSTLDVVRRQAERFEIVSLTAASSVEALA AQAIEFRPKIVAVANQEAAGRLRALLPAGLRSLVAHGAEGYLEAAAGCGAQVVVSAMV GAAGLLPTLAAVKAGLTVALANKETLVAGGELVMAEAARGGATILPVDSEHSAIFQCL LAGAPEEVARLWLTASGGPFRQLDRQALAKVTPEQALAHPNWSMGPKITVDSATLMNK GLEVIEAHWLFDQPYDKIKVVVHPQSIVHSMVEFVDGNFMAQMGPPDMRLPIALALNH PRRLRAVGPSLDPGKLAALSFEEPDPERFPALGLACQAGRAGKAAPAVLNAANEVAVR RFLAGRLGFLDIASCVEAVLERHPGLPADSIGAILEADRWARAEARAWLDRRGS" misc_feature 844287..845372 /locus_tag="Deba_0746" /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional; Region: PRK05447" /db_xref="CDD:180089" misc_feature 844296..844679 /locus_tag="Deba_0746" /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase; Region: DXP_reductoisom; pfam02670" /db_xref="CDD:190383" misc_feature 844719..844970 /locus_tag="Deba_0746" /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; Region: DXP_redisom_C; pfam08436" /db_xref="CDD:192038" gene 845457..846533 /locus_tag="Deba_0747" /db_xref="GeneID:9493197" CDS 845457..846533 /locus_tag="Deba_0747" /note="COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR004387:IPR001478:IPR008915; KEGG: dol:Dole_0481 membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: A8ZTM7 Putative membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP" /codon_start=1 /transl_table=11 /product="membrane-associated zinc metalloprotease" /protein_id="YP_003806713.1" /db_xref="GI:302342184" /db_xref="GeneID:9493197" /translation="MLITIASAVLVLGVLVFVHELGHFLVAKRLGVGVSVFSLGFGPR LAGFKRGETDYRLSAIPLGGFVRMIGESPGEPVAPEDLPRSFSHKGVWRRMAIVAAGP LSNVLFAFLLYYAVTLFWGQPMLTAQVGSLVDGMPAQAAGLRPGDVISAVDGRAIASW DDLREAIRASQGRRLMLTAQRDGQALELAMSPKRVDTKDIFGDVITVYQVGVAPSGQV LTQSFGPLEAVGRALGQTIEASQLILVSVGKIATRQVPMESVGGPIFIAQVAGEAARH GLNALLGLAALISVNLAILNLLPIPALDGGHLLVFLFEAVTRRPVSTRVRERIQQAGV FCLLLLTVLVLYNDIARIFGQTGP" misc_feature 845457..846518 /locus_tag="Deba_0747" /note="Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]; Region: COG0750" /db_xref="CDD:31093" misc_feature 845469..>845813 /locus_tag="Deba_0747" /note="RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163" /db_xref="CDD:100084" misc_feature order(845511..845516,845523..845525) /locus_tag="Deba_0747" /note="active site" /db_xref="CDD:100084" misc_feature 845796..846032 /locus_tag="Deba_0747" /note="PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most...; Region: PDZ_metalloprotease; cd00989" /db_xref="CDD:29046" misc_feature order(845799..845810,845814..845816,845943..845948, 845955..845960) /locus_tag="Deba_0747" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29046" misc_feature <846318..846509 /locus_tag="Deba_0747" /note="Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic...; Region: S2P-M50; cl10020" /db_xref="CDD:127338" misc_feature 846342..846353 /locus_tag="Deba_0747" /note="putative substrate binding region [chemical binding]; other site" /db_xref="CDD:100078" gene 846536..847240 /locus_tag="Deba_0748" /db_xref="GeneID:9493198" CDS 846536..847240 /locus_tag="Deba_0748" /note="COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: dps:DP1162 glycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease; SPTR: Q6AP33 Related to glycoprotein endopeptidase; PFAM: glycoprotease family" /codon_start=1 /transl_table=11 /product="peptidase M22 glycoprotease" /protein_id="YP_003806714.1" /db_xref="GI:302342185" /db_xref="GeneID:9493198" /translation="MPTLALDTAFQAGGVALAQGDRLLGELLQNSATTHSRRVLAAVD FLLGQLGQTRGAIDGLAVTVGPGYFTGLRIGLATAQGLALGLGAPLVGVSTLRLLAQN LAVGAGGLIWALADARRGLLYAACFRDEPGGLTRLEDDMAISPQRLLPLLRPPAVLVG EGARLLAADALAEGLRLAPRWADLPRPGLLALLGAERLAAGQGQPPEAVRARYCRPSD AEVRFQLPLDEYRLVE" misc_feature 846542..847075 /locus_tag="Deba_0748" /note="Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214; cl14000" /db_xref="CDD:189252" gene 847297..848016 /locus_tag="Deba_0749" /db_xref="GeneID:9493199" CDS 847297..848016 /locus_tag="Deba_0749" /note="COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: pde:Pden_1932 hypothetical protein; PFAM: protein of unknown function DUF541; SPTR: Q1N8P4 Outer membrane protein; PFAM: Protein of unknown function (DUF541)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806715.1" /db_xref="GI:302342186" /db_xref="GeneID:9493199" /translation="MARVVCRVLLVVALLLAAPAWAGQGRDQEARPTVTVTGRAVLHK AADEAVLRLGMVSLAPTAAEAAERNSRLTAQVRAALKDLLGQGDRLETAGYDLSAQTQ WDEAAKVNRVTGYRAAHTLRLTSADPQSLGRALDAAVGAGANEIDGPTWRLADEAAAR IEAQAAALQDASAQARALAKAAGLRLAGLLSADAAGQGGAAPVARLAMAAPRAAAPPT QLTPGRIAVEASVTCTFALTR" misc_feature 847396..>847749 /locus_tag="Deba_0749" /note="Protein of unknown function (DUF541); Region: SIMPL; cl01077" /db_xref="CDD:194028" gene 848072..848311 /locus_tag="Deba_0750" /db_xref="GeneID:9493200" CDS 848072..848311 /locus_tag="Deba_0750" /note="KEGG: dba:Dbac_0407 hypothetical protein; SPTR: C7LVQ4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806716.1" /db_xref="GI:302342187" /db_xref="GeneID:9493200" /translation="MEQQDLALLERLVAENDELAQLWKQHQELETALEGFNHRVYLSS EEQLERKRLQKIKLAGRDRIEAILAEHRRQNGQDR" gene 848295..848939 /locus_tag="Deba_0751" /db_xref="GeneID:9493201" CDS 848295..848939 /locus_tag="Deba_0751" /EC_number="4.1.1.65" /note="COGs: COG0688 phosphatidylserine decarboxylase; InterPro IPR004428:IPR003817; KEGG: gme:Gmet_1263 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; PRIAM: phosphatidylserine decarboxylase; SPTR: Q39W75 phosphatidylserine decarboxylase proenzyme; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein" /codon_start=1 /transl_table=11 /product="phosphatidylserine decarboxylase related protein" /protein_id="YP_003806717.1" /db_xref="GI:302342188" /db_xref="GeneID:9493201" /translation="MVRIDKFPLAAPGWPYYLGAALLAAAATAWGPWWLAAPLWGLCA FVVFFFRDPARQGQSAANQLLSPADGTVVYVGPASHPSLGDQPLTMISIFMSLFNVHV NRAPLSGRVLSMRHIAGGFAMANLERASQANERLEVVFEAEGGQRVLVAQVAGMVARR IECELAPEQNVQKGARYGMIRFGSRLDVYLPQEAAVLVAKGQKARAGLTVIGEL" misc_feature 848424..848936 /locus_tag="Deba_0751" /note="Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656" /db_xref="CDD:194662" gene 848941..849732 /locus_tag="Deba_0752" /db_xref="GeneID:9493202" CDS 848941..849732 /locus_tag="Deba_0752" /note="COGs: COG1183 phosphatidylserine synthase; InterPro IPR004533:IPR000462; KEGG: glo:Glov_2499 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: B3E5X2 CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol/serineO-phosphatidyltransfera se" /protein_id="YP_003806718.1" /db_xref="GI:302342189" /db_xref="GeneID:9493202" /translation="MARRRRPKRSNKEARRRAIYLLPNLFTTASLFSGFFAMIEAIDG NFLVASAAIFASLIFDGLDGRVARATNTTSRFGVEYDSLADLVAFGAAPAVMFYVWAL RPLGRLGFLAAFLFAACGALRLARFNVQSDSAKPSKHFVGLPIPAAASMLAGTVMMWT QTSLVEPIPAWVAVAMVFVLSFLMVSNIPYLSFKSLGLARLRSFNGLVACLLLFVLVA LQPYVMGFALLALYVVGGPLGARLLERGKAEKEQAEQLEHKPDHS" misc_feature 848983..849681 /locus_tag="Deba_0752" /note="Phosphatidylserine synthase [Lipid metabolism]; Region: PssA; COG1183" /db_xref="CDD:31376" misc_feature 849019..849510 /locus_tag="Deba_0752" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene 849816..851366 /locus_tag="Deba_0753" /db_xref="GeneID:9493203" CDS 849816..851366 /locus_tag="Deba_0753" /note="COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterProIPR005671:IPR000891:IPR013785:IPR013709:IPR 002034; KEGG: dal:Dalk_0565 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; SPTR: B8FHI3 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase, bacterial type" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="YP_003806719.1" /db_xref="GI:302342190" /db_xref="GeneID:9493203" /translation="MSNYVKIFDTTLRDGEQSPGASMNKEEKLRLARKLAKLGVDIIE AGFPAASPGDFEAVRLIAGDLRGGPVVCGLSRTRPADIERCWQAVREAEKPRIHVFLA TSDIHLQYKLQMTRQQVLDEIRSGVGHARGLCEDVQWSAEDASRSDPDFLCQCVRVAL EAGATTINIPDTVGYALPHEFYERISYIRANVPEVARATLSVHCHDDLGHAVANSIAG VRAGARQVEGCINGIGERAGNAALEEVIMTLATRQKELGLITGVNKAEIHSTSRLVTM ISGLPVQPNKAIVGANAFAHESGIHVDGVLKQPLTYEIMTPEEVGLASNTVVLGKHSG RAALRNWLSGNGYELDRQQCESLFEAFKRLADKKKEIENDDLEALIADEILRIPLRWK LDYLNVMAGTEVEPVATVRVFDGDSLRREAAFGVGPVDAVYNAIRKITGTQAKLMRYG VASITGGVDAQGEVTVKLQENGNEALGKGADSDILVASAKAFLNGINRLEYNKTQKME LTPGERQL" misc_feature 849816..851339 /locus_tag="Deba_0753" /note="2-isopropylmalate synthase; Validated; Region: PRK00915" /db_xref="CDD:179166" misc_feature 849834..850637 /locus_tag="Deba_0753" /note="2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; Region: DRE_TIM_IPMS; cd07940" /db_xref="CDD:163678" misc_feature order(849852..849857,849864..849866,849945..849947, 850041..850043,850107..850109,850233..850235, 850239..850241,850323..850325,850329..850331, 850422..850424,850428..850430) /locus_tag="Deba_0753" /note="active site" /db_xref="CDD:163678" misc_feature order(849852..849857,849945..849947) /locus_tag="Deba_0753" /note="catalytic residues [active]" /db_xref="CDD:163678" misc_feature order(850422..850424,850428..850430) /locus_tag="Deba_0753" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163678" misc_feature 850983..851312 /locus_tag="Deba_0753" /note="LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; pfam08502" /db_xref="CDD:149524" gene 851571..852596 /locus_tag="Deba_0754" /db_xref="GeneID:9493204" CDS 851571..852596 /locus_tag="Deba_0754" /EC_number="1.2.1.11" /note="COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterProIPR005986:IPR016040:IPR000534:IPR012280:IPR 000319:IPR012080; KEGG: gme:Gmet_0604 aspartate semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Q39Y27 Aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)" /codon_start=1 /transl_table=11 /product="aspartate-semialdehyde dehydrogenase" /protein_id="YP_003806720.1" /db_xref="GI:302342191" /db_xref="GeneID:9493204" /translation="MSKQYRVAVAGATGAVGNQMIQCLEERDFPIGELRLLASERSRG KRLKYKGEDIEVQVLGEGSFQGVDIALFSAGGGTSLEWSPKAAQAGAVVIDNSAAWRM DPEVPLVVPEVNPHAVAGFKKKGIIANPNCSTIQMVVVLKPIHDLAGIERVVVSTYQA VSGTGQKAIVELQGQLKAIYCQDAQPQAKVYPHVIAQNVLPHIDIFLDNGYTKEEMKM VHETVKIMEDPTIKVSATCVRVPVIYGHSEACNITTARKISAQQAREALAKAPGVKVV DDPANKLYPMPLDAAGQDLTLVGRIREDVSQEKGLDLWLVADNIRKGAAANAVQIAEL LIAGGHI" misc_feature 851625..852578 /locus_tag="Deba_0754" /note="aspartate-semialdehyde dehydrogenase; Provisional; Region: PRK14874" /db_xref="CDD:184874" misc_feature 851625..851879 /locus_tag="Deba_0754" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 851991..852536 /locus_tag="Deba_0754" /note="Semialdehyde dehydrogenase, dimerisation domain; Region: Semialdhyde_dhC; pfam02774" /db_xref="CDD:145758" gene 852621..853190 /locus_tag="Deba_0755" /db_xref="GeneID:9493205" CDS 852621..853190 /locus_tag="Deba_0755" /note="COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398:IPR016065:IPR002052; KEGG: scl:sce8059 methylase; PFAM: Protein of unknown function methylase SPTR: A9FHL8 Putative methylase; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_003806721.1" /db_xref="GI:302342192" /db_xref="GeneID:9493205" /translation="MLKVCGGELRGRALKAPAGHDTRPTAAKVRQALFNILGGRTSGA RVCDLFAGSGALGVEALSRGAAWCLFVERRRLVCRLIAQNLAGLGLEARGRVLMADAA MASQRLLEQGPFDLALADPPYGQGFVARLARLGARPGFLAPGGVLVIEHAPGEAPPQT GLVIIDHRAYGQTELTFLGVPAAPAGDAQ" misc_feature 852753..853070 /locus_tag="Deba_0755" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(852765..852785,852834..852839,852915..852923, 852978..852980) /locus_tag="Deba_0755" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 853187..853681 /locus_tag="Deba_0756" /db_xref="GeneID:9493206" CDS 853187..853681 /locus_tag="Deba_0756" /EC_number="2.7.7.3" /note="COGs: COG0669 phosphopantetheine adenylyltransferase; InterPro IPR004821:IPR001980:IPR014729:IPR004820; KEGG: sat:SYN_00909 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Q2LTS1 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain" /codon_start=1 /transl_table=11 /product="pantetheine-phosphate adenylyltransferase" /protein_id="YP_003806722.1" /db_xref="GI:302342193" /db_xref="GeneID:9493206" /translation="MTLAVYPGSFDPITNGHLSILRRALEIFPRIVVAIGRNSEKKSL FTVDERLEIIGEVTRNMNGVRAESFDGLLMDYVTGLGSNVVLRGMRAMSDFEYEFQMA LMNRKINKDVQTVFLMTDYKWFYVSSTIIKEAASLGGNISGLVPQLVERRLAEKFAQL RAAR" misc_feature 853187..853654 /locus_tag="Deba_0756" /note="Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]; Region: NadD; COG1057" /db_xref="CDD:31257" misc_feature 853196..853651 /locus_tag="Deba_0756" /note="Phosphopantetheine adenylyltransferase; Region: PPAT; cd02163" /db_xref="CDD:173914" misc_feature order(853202..853216,853232..853237,853244..853246, 853292..853294,853307..853309,853397..853405, 853445..853450,853454..853456,853475..853480, 853487..853489,853499..853501,853541..853543, 853553..853555,853562..853564) /locus_tag="Deba_0756" /note="active site" /db_xref="CDD:173914" misc_feature 853226..853237 /locus_tag="Deba_0756" /note="(T/H)XGH motif; other site" /db_xref="CDD:173914" gene complement(853737..854294) /locus_tag="Deba_0757" /db_xref="GeneID:9493207" CDS complement(853737..854294) /locus_tag="Deba_0757" /note="COGs: COG2078 conserved hypothetical protein; InterPro IPR002733; KEGG: sat:SYN_00073 cytoplasmic protein; PFAM: AMMECR1 domain protein; SPTR: Q2LQ75 Hypothetical cytosolic protein; PFAM: AMMECR1; TIGRFAM: conserved hypothetical protein TIGR00296" /codon_start=1 /transl_table=11 /product="AMMECR1 domain protein" /protein_id="YP_003806723.1" /db_xref="GI:302342194" /db_xref="GeneID:9493207" /translation="MSQALSPEDKKRLLAIARQTVEDASVGRAPRAWPTAPGQPPDER GAFVTLHKNGQLRGCIGNFVGDGSLERTVSQMAVAAASQDPRFRPLRPDELAEIDIEV SVLSPLERIDDPELIEVGRHGIYLISPRGRGVLLPQVAVEQGWDRWTFLDHTCLKAGL NPGCWREPEVNIFIFSADIFGESQA" misc_feature complement(853749..854258) /locus_tag="Deba_0757" /note="AMMECR1; Region: AMMECR1; cl00911" /db_xref="CDD:186253" gene complement(854291..854788) /locus_tag="Deba_0758" /db_xref="GeneID:9493208" CDS complement(854291..854788) /locus_tag="Deba_0758" /note="COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086:IPR015797:IPR020476:IPR020084; KEGG: gme:Gmet_0988 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: Q39WZ4 NUDIX hydrolase; PFAM: NUDIX domain" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_003806724.1" /db_xref="GI:302342195" /db_xref="GeneID:9493208" /translation="MRRDLLCPSCGATVEAYRNPVPTADMIIELTGGGQPGPVVLVRR ANPPLGWALPGGFVDYGESAAHAARREALEETGLRVEVLALIGVYGRPERDPRQHTIT TAYAGRASGQPIAGDDAAAVAAFALDKLPPDICFDHRQILDDYRAWRLGLRPAAPVSA MELME" misc_feature complement(<854447..854674) /locus_tag="Deba_0758" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or...; Region: Nudix_Hydrolase; cd02883" /db_xref="CDD:72880" misc_feature complement(order(854561..854587,854615..854623)) /locus_tag="Deba_0758" /note="nudix motif; other site" /db_xref="CDD:72880" gene complement(854785..855177) /locus_tag="Deba_0759" /db_xref="GeneID:9493209" CDS complement(854785..855177) /locus_tag="Deba_0759" /note="KEGG: dal:Dalk_3826 hypothetical protein; SPTR: B8FC94 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806725.1" /db_xref="GI:302342196" /db_xref="GeneID:9493209" /translation="MPAEVTAISGRACAYYLAGRCARTRSQAESAAAFCPMMQARGKL GAQTRDRLNRLDRLADPNDREVARRHIMQKTAEAIGALKCPDFVPDVHGQICIHQHLI YCQLLLPPCPGRCEDFLPRAKPGPRAQP" gene complement(855177..855617) /locus_tag="Deba_0760" /db_xref="GeneID:9493210" CDS complement(855177..855617) /locus_tag="Deba_0760" /note="COGs: COG2258 conserved hypothetical protein; InterPro IPR005302:IPR015808:IPR011037; KEGG: ppd:Ppro_0303 MOSC domain-containing protein; PFAM: MOSC domain containing protein; SPTR: A1AKR7 MOSC domain containing protein; PFAM: MOSC domain" /codon_start=1 /transl_table=11 /product="MOSC domain containing protein" /protein_id="YP_003806726.1" /db_xref="GI:302342197" /db_xref="GeneID:9493210" /translation="MSHAEVVSVNISLEKGLPKTPIAEGRLEPDVGLVGDAHAGPWHR QLSLLAMESIDIMRQRGAEVNPGDFAENITTRGLCLHTLPVGTLLQIGPVRAAVTQIG KECHAGCAIRQKVGDCIMPRQGIFVRVLNAGTVRPGDAVRLLED" misc_feature complement(855189..855524) /locus_tag="Deba_0760" /note="MOSC domain; Region: MOSC; pfam03473" /db_xref="CDD:146227" gene 855700..857100 /locus_tag="Deba_0761" /db_xref="GeneID:9493211" CDS 855700..857100 /locus_tag="Deba_0761" /note="COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR012795:IPR012796:IPR014729:IPR011063; KEGG: geo:Geob_3424 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; SPTR: A1HRS0 TRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain" /codon_start=1 /transl_table=11 /product="tRNA(Ile)-lysidine synthetase" /protein_id="YP_003806727.1" /db_xref="GI:302342198" /db_xref="GeneID:9493211" /translation="MAKPWPGPGTLVAAVSGGADSVAMLRLLAEQASERGWRLVVGHV DHGLRADSAVDAAFVADLAGALGLECRVVRVVARQAGLSPEDAARRARRQALLALAEE LDAVAVALAHTIDDQAETVLARLLTGAGPGGLAAMRPRSGPLWRPLLAVRGRELRDYL AALGQPWREDPSNADRAYQRNRLRHAVLPLCRQLINPRADEALARLAGLLADEEDYWR GLLDDALAAHGRREGASLCLSLGWLLAQPPFLRRRMMRHIAGRLLGGGQHLLFDHVAG LERLLTMAAGKSLTLPFGLRAWREHEHLRLAPDVDPPPLRVRLDGPGLVDLPALGTAL LAREVAPGATLRARGGRAWLPLEDVRWPLELCWPWPGMRFWPLGAPGAKRLSKIAIDR KVPPWWRKRLLVVADEGGPWWVWPLAPAQRARVRADGPLLELSLVDSLANWPYSIEFK GPISDRELPLPTWAEP" misc_feature 855769..856266 /locus_tag="Deba_0761" /note="N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992" /db_xref="CDD:30179" misc_feature 856807..856926 /locus_tag="Deba_0761" /note="B3/4 domain; Region: B3_4; cl11458" /db_xref="CDD:196242" gene 857097..859055 /locus_tag="Deba_0762" /db_xref="GeneID:9493212" CDS 857097..859055 /locus_tag="Deba_0762" /EC_number="3.6.4.3" /note="COGs: COG0465 ATP-dependent Zn protease; InterProIPR005936:IPR003593:IPR011546:IPR003959:IPR 000642:IPR003960; KEGG: dma:DMR_25740 cell division protein FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: ATPase AAA; SPTR: C4XU43 Cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: FtsH extracellular; peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH" /codon_start=1 /transl_table=11 /product="ATP-dependent metalloprotease FtsH" /protein_id="YP_003806728.1" /db_xref="GI:302342199" /db_xref="GeneID:9493212" /translation="MTQGNKPPINPLFKNLALWLVISLMMVLLFNMFNQRSQSSASVS YSEFMDAVDQGQVSRVSIQGQEVSGDKRDGVHFRTFVPDDPELIKNLRAKGVRITAKP ADESPWYMTLLASWFPMLLLIGVWIFFMRQMQSGGGKAMSFGKSRAQLMTEPGGRRIT FEDVAGVEEAKEELAEIVEFLREPKKFTRLGGRIPKGVLLVGSPGTGKTLLARAIAGE AGVPFFSISGSDFVEMFVGVGASRVRDLFTQGKKQAPCIIFIDEIDAVGRHRGAGLGG GHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPVPDV RGREKVLHVHTRRTPLGPDVDLAVLARGTPGFSGADLENMVNEAALLAARENKDVIGM LDFERAKDKVLMGTERRSLILSDEEKRTTALHEAGHALVAMMLPGTDPVHKVTIIPRG RALGLTQQLPVDERHTYPRDYLVNNLAVFMGGRAAEEVALDKITTGAGNDIERATDLA RKMVCEWGMSEVIGPASFGRREEHPFLGRELGSQRDYSERTAVAIDDEVRRFVHEAHE TAIGILRAHRDKLDALAAALLEEETLDADAVESIVRGGPRKKAKPAAAPAPPPEPAAP RDLPGDGPVESEPWSAARAREGADEPDA" misc_feature 857142..857402 /locus_tag="Deba_0762" /note="FtsH Extracellular; Region: FtsH_ext; pfam06480" /db_xref="CDD:191539" misc_feature 857418..858830 /locus_tag="Deba_0762" /note="ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241" /db_xref="CDD:162266" misc_feature 857673..858065 /locus_tag="Deba_0762" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 857700..857723 /locus_tag="Deba_0762" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(857703..857726,857877..857879,858018..858020) /locus_tag="Deba_0762" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 857865..857882 /locus_tag="Deba_0762" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 858060..858062 /locus_tag="Deba_0762" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 858330..858830 /locus_tag="Deba_0762" /note="Peptidase family M41; Region: Peptidase_M41; pfam01434" /db_xref="CDD:144872" gene 859039..859908 /locus_tag="Deba_0763" /db_xref="GeneID:9493213" CDS 859039..859908 /locus_tag="Deba_0763" /EC_number="2.5.1.15" /note="COGs: COG0294 Dihydropteroate synthase; InterPro IPR006390:IPR000489:IPR011005; KEGG: mxa:MXAN_4353 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; PRIAM: Dihydropteroate synthase; SPTR: Q1D497 Dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase" /protein_id="YP_003806729.1" /db_xref="GI:302342200" /db_xref="GeneID:9493213" /translation="MNQMHRVKRRLDLPGGGALELGERTLIMGVVNVTPDSFSDGGRY QDIEAAVAHGLSLVAQGADILDVGGESTRPGSDPVSAEEEIARVVPVIAGLARQCEAV ISIDTNKAQVAAAAMAAGARLINDVTALTGDPAMTAVAVESGAAVVLMHMLGTPKTMQ QSPAYDDVVAEVGAYLVQRAQAVEAAGVARGRIIIDPGIGFGKNLEHNLSLLRNLPRL AELGYPLLLGASRKAFIGQLTGRPVELRLWGTLGAHVLGAALGADIVRVHDVAPLRDA LAVCDAVMAREPR" misc_feature 859111..859881 /locus_tag="Deba_0763" /note="DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and...; Region: DHPS; cd00739" /db_xref="CDD:29545" misc_feature 859114..859887 /locus_tag="Deba_0763" /note="dihydropteroate synthase; Region: DHPS; TIGR01496" /db_xref="CDD:162390" misc_feature order(859132..859134,859354..859356,859411..859413, 859417..859419,859486..859488,859624..859626, 859720..859722,859732..859734,859834..859836, 859840..859842) /locus_tag="Deba_0763" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29545" misc_feature order(859663..859665,859675..859680,859792..859794, 859804..859806,859816..859818,859861..859866) /locus_tag="Deba_0763" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29545" misc_feature 859726..859734 /locus_tag="Deba_0763" /note="inhibitor binding site; inhibition site" /db_xref="CDD:29545" gene 859908..860750 /locus_tag="Deba_0764" /db_xref="GeneID:9493214" CDS 859908..860750 /locus_tag="Deba_0764" /note="COGs: COG1624 conserved hypothetical protein; InterPro IPR014046:IPR003390; KEGG: tye:THEYE_A0044 hypothetical protein; PFAM: protein of unknown function DUF147; SPTR: C8R143 Putative uncharacterized protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: conserved hypothetical protein TIGR00159" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806730.1" /db_xref="GI:302342201" /db_xref="GeneID:9493214" /translation="MGDLLALLQQLRWQDLADIALVAFVFYQIILLVRGTRAMQMLTG LGLVMAVWWLSRELDMVATNWLITSFLSSLVVVVIVIFQADIRRALTRMGQRSIFANH APQADTLRDVATAAGIMARRRTGALMVLERRTGLEDYIEGSVKIEAQVSAELLVSIFQ VTGPLHDGAVVIEGGKIRVARCMLPLAKDAEAGRRLGSRHLAAMGLSSESDAVVVVVS EERGQISLALGGKLVGPLEVEQLQQKLGELFPQTDPNQTVAARLWGGLRHLAGGFSKD KDRA" misc_feature 859938..860630 /locus_tag="Deba_0764" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1624" /db_xref="CDD:31811" misc_feature 860241..860606 /locus_tag="Deba_0764" /note="DisA bacterial checkpoint controller nucleotide-binding; Region: DisA_N; pfam02457" /db_xref="CDD:190315" gene 860743..861393 /locus_tag="Deba_0765" /db_xref="GeneID:9493215" CDS 860743..861393 /locus_tag="Deba_0765" /note="InterPro IPR012505; KEGG: pca:Pcar_1000 hypothetical protein; PFAM: YbbR family protein; SPTR: Q1JY24 YbbR-like; PFAM: YbbR-like protein" /codon_start=1 /transl_table=11 /product="YbbR family protein" /protein_id="YP_003806731.1" /db_xref="GI:302342202" /db_xref="GeneID:9493215" /translation="MLERLRNNWQLKLLALFFSVMLWLIVVGVEKAEITVKVPVEVFG QSPNLVVDGEVAPELDLRLYGPRTLVRGVAERRPVKQVNLKGLAAGEHVFRLGVEDIS LPPWVSVVRVSPSEIRLKLVERFSRQVRVSPVIKGQPADGFELEAVTFDPPMVTVSGL QKDLAELDWIWSEQISVSGLSQSTEKLVELRRPAGRSVLVSPTTVKAIISIKAASI" misc_feature 860743..>861312 /locus_tag="Deba_0765" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4856" /db_xref="CDD:34465" misc_feature 861127..861357 /locus_tag="Deba_0765" /note="YbbR-like protein; Region: YbbR; pfam07949" /db_xref="CDD:191904" gene 861427..862797 /locus_tag="Deba_0766" /db_xref="GeneID:9493216" CDS 861427..862797 /locus_tag="Deba_0766" /EC_number="5.4.2.10" /note="COGs: COG1109 phosphomannomutase; InterProIPR006352:IPR016055:IPR005841:IPR005844:IPR 005845:IPR005846:IPR005843:IPR016066; KEGG: gbm:Gbem_2635 phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: C6MN75 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase" /codon_start=1 /transl_table=11 /product="phosphoglucosamine mutase" /protein_id="YP_003806732.1" /db_xref="GI:302342203" /db_xref="GeneID:9493216" /translation="MEGQARIFGTDGVRGVANVHPMTVEMALAIGQGVAAVFRRGKAK HKVIIGKDTRLSGYMFENALVAGICSMGGDALLMGPMPTPAIAFLTRSMRADAGIVIS ASHNPYEDNGIKIFARDGYKLPDETETLIENYALCAASCRAPEQAPEAGKVGRARRID DAAGRYIVFAKRTFPDELTLDGLRIVIDCANGATYRVAPAVFAELGADVILSGVEPDG RNINAQCGALHPENTAALVRQHEADLGLAFDGDGDRLIMVDEKGQVVDGDQIMAVCAD YLMDQGVLNHATVVATVMSNLGLELCLRERGVRMLRTKVGDRYVVEAMRQGGYNLGGE QSGHILFLDHNTTGDGVVSALQVLAIMVRTGKRLSELAAVMTRLPQVLINVPVRQRTP IAQVPGLVAAIKTQEERLGQTGRLLVRYSGTEAKLRIMVEAADVDLMNEAAEELRRVV VAELGA" misc_feature 861442..862791 /locus_tag="Deba_0766" /note="phosphoglucosamine mutase; Provisional; Region: glmM; PRK14314" /db_xref="CDD:184614" misc_feature 861445..862764 /locus_tag="Deba_0766" /note="GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-...; Region: GlmM; cd05802" /db_xref="CDD:100095" misc_feature order(861451..861453,861457..861459,861466..861468, 861736..861744,861766..861768,862171..862173, 862177..862179,862183..862188,862306..862308, 862369..862377,862426..862428,862432..862434, 862438..862440,862681..862683,862687..862695, 862708..862710) /locus_tag="Deba_0766" /note="active site" /db_xref="CDD:100095" misc_feature order(861457..861459,861736..861738,862186..862188, 862306..862308,862369..862371,862375..862377, 862426..862428,862432..862434,862438..862440, 862681..862683,862687..862695,862708..862710) /locus_tag="Deba_0766" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100095" misc_feature order(861736..861738,862171..862173,862177..862179, 862183..862185) /locus_tag="Deba_0766" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100095" gene 862820..863587 /locus_tag="Deba_0767" /db_xref="GeneID:9493217" CDS 862820..863587 /locus_tag="Deba_0767" /EC_number="2.7.1.33" /note="COGs: COG1521 Putative transcriptional regulator protein; InterPro IPR004619; KEGG: sfu:Sfum_0549 pantothenate kinase; PFAM: Bvg accessory factor; PRIAM: Pantothenate kinase; SPTR: A0LFP6 Type III pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III" /codon_start=1 /transl_table=11 /product="transcriptional activator, Baf family" /protein_id="YP_003806733.1" /db_xref="GI:302342204" /db_xref="GeneID:9493217" /translation="MLLAIDVGNTNTVIGVFQQEKLVADWRVRTEPERTRDELAILIK NLFANSPLSLSSIRGVIISCVVPPVVNAFNQFCRRYLDMNPMFVGPGMKTGMPILYDN PREVGADRIVNAVAAYERHRCDLIVVDFGTATTFDCISAKGEYLGGAIAPGISISMDA LFTRASKLPRVEIFNQPKAAVAKDTISAMNAGIVFGYAGLVDGLVRAINAERGLQSKV IATGGLARVIATQSETLEDIDELLTLDGLRILYQRNQ" misc_feature 862820..863584 /locus_tag="Deba_0767" /note="Bordetella pertussis Bvg accessory factor family; Region: Bvg_acc_factor; cl09130" /db_xref="CDD:195799" gene 863584..864483 /locus_tag="Deba_0768" /db_xref="GeneID:9493218" CDS 863584..864483 /locus_tag="Deba_0768" /note="COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: ade:Adeh_3395 peptidase S66, LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: Q2IF02 peptidase S66, LD-carboxypeptidase A; PFAM: LD-carboxypeptidase" /codon_start=1 /transl_table=11 /product="peptidase U61 LD-carboxypeptidase A" /protein_id="YP_003806734.1" /db_xref="GI:302342205" /db_xref="GeneID:9493218" /translation="MTAARAPIWPRPGRAVAVTAPAGRVEPVALAAGLEALRALVGQR PLLAEGLATAEGYLAGPDQQRAARLGRLWADETVDLIVCARGGFGSSRLLPLLDLPAM AAAGKCLLGFSDITCLVLALACRGLVGLHGPVLTQLPRLDQASLADVSALLAGRPPWP GRLTGQGAGGGVAEGPLLGGNLTMLCHLVGTPWQPDLDGAILCLEDTGEAPYRLDRMI TKLELTGLLDRVAGVALGGLDAAGQSPPEHLEALMNRLRVRGLPLVWDLPFGHGARNR ILPMGARARLDGAAGLLETGLDL" misc_feature 863629..864423 /locus_tag="Deba_0768" /note="LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein; Region: Peptidase_S66; cd07025" /db_xref="CDD:132882" misc_feature order(863854..863859,864139..864144,864148..864153, 864217..864222,864226..864231,864238..864243, 864343..864348) /locus_tag="Deba_0768" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132882" misc_feature order(863920..863922,864196..864198,864394..864396) /locus_tag="Deba_0768" /note="catalytic triad [active]" /db_xref="CDD:132882" gene 864480..865541 /locus_tag="Deba_0769" /db_xref="GeneID:9493219" CDS 864480..865541 /locus_tag="Deba_0769" /note="COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR012338:IPR001466; KEGG: dol:Dole_0591 beta-lactamase; PFAM: beta-lactamase; SPTR: A8ZU89 beta-lactamase; PFAM: beta-lactamase" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_003806735.1" /db_xref="GI:302342206" /db_xref="GeneID:9493219" /translation="MIEKLQAMLDDGVARGVAPAMVLHLWQGSEAGCRLSAGAAEPDT YFDLASLTKPLATALLAFDLAADGVLPLEATLGQVWGDVTPPDKRPISVAHLLCHASG LPAHRPFYQALEKLAAPSARRGLLKAMLLNEPLEAPPGARAVYSDLGYMLLGLLLEEA AGVLLETAVAQTHARLGLSDAPRFNPTGGPAPIALSRIAPCGPLPGRPLIHGQVEDEN AFAMGGVAGHSGLFGASAQVVALMAAMARLTAGEGPWPAQIVAPLFHVDAATPGSTRT AGLDTPCGPESAAGPNAPAGVVGHLGFTGVSMWLHPASRRGVVLLTNRVALGRANDAI GPFRRQVHQLAWRALGETS" misc_feature 864492..865508 /locus_tag="Deba_0769" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" gene 865538..866989 /locus_tag="Deba_0770" /db_xref="GeneID:9493220" CDS 865538..866989 /locus_tag="Deba_0770" /note="COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR016040:IPR013221:IPR004101:IPR000713; KEGG: dps:DP2930 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diamino pimelate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: Q1NLI3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase" /codon_start=1 /transl_table=11 /product="Mur ligase middle domain protein" /protein_id="YP_003806736.1" /db_xref="GI:302342207" /db_xref="GeneID:9493220" /translation="MTLDPTLNCLPQRLRSVHLMGVGGVAMGALAGALADRGLDVRGS DGPLYPPMSTFLAAKGVPVAQGYDPANLDPPPDLVVVGNVIRRDNPEAMELARRGLCY LSLPQALAELFIADKTAIVIAGTHGKTTTTALTASGLLHAGAAPGFLVGGVMIEGGRN FADGRGAHFVVEGDEYDTAFFDKRPKFVHYRPKIGVLTSVEFDHADIYADLDAVRVAF DQFAALIPPEGVLIAWGDDPEVLARAQKARCPVQTYGQGPQCLWRLLAARPSPQGGAL IELQPPGGPAVEFYSPLAGRHNALNACAAVAAMTAGGVALAEACRVQGLFQGVRRRQE VRDRAGGVTVVDDFAHHPTAVRETIAAVADFGLPGWRPGDGRLIAVFEPRTNTSKTNH FQAEYATAFDRADLVLLREPPGAEAIEASRRFSSTRLAQDLAERGLQARALANGDGLL AELLAELRPGDLCLIMSNGAFEGLHARLLAALA" misc_feature 865565..866986 /locus_tag="Deba_0770" /note="UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]; Region: MurC; COG0773" /db_xref="CDD:31116" misc_feature <866108..866428 /locus_tag="Deba_0770" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" misc_feature 866522..866788 /locus_tag="Deba_0770" /note="Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875" /db_xref="CDD:190458" gene complement(867067..869049) /locus_tag="Deba_0771" /db_xref="GeneID:9493221" CDS complement(867067..869049) /locus_tag="Deba_0771" /note="COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: sat:SYN_01425 outer membrane B12 receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: C0GQ96 Outer membrane insertion C-terminal signal; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor plug" /protein_id="YP_003806737.1" /db_xref="GI:302342208" /db_xref="GeneID:9493221" /translation="MKRSSKLAGAICAVLLLWLNQPALAADQADQAYALPETSVSANR WEQELDKLPRNVTIITRQQIEEQNPMSVVELLKGVPGLYVMQSDTYGTYAEISMRGMG YPASAKTLVTVDGRRQNLIDGNGVDFSTIPVDNIERIEVLHGPAGVLYGDSAVGGVIN IITRKGSGPAGGTVSAQYGSYDMYGFKGNFKGATEYMDWFVAARYDDADGYRDENHTR IKGANFKTDFYPNQTWSFLVDGVINQANFGVPGSLTKAQMDRDRRMASYAGAYYENKN QAIRGQVKGDFQRCGLVTMDLAFRKWQSEAEVWSHGDNDSKIYDIQPKYVLDSTVGGF ANRLTAGVDYSHWDVDYDSFDLTSKAWQYSHEFKMDSLAGYALNEFSLTKDLVLNVGA RYQDQKYDLASRLVGGAGPTDTPGDEQWAWTAGMVYNFAPGSKVFGRVARAFRFPRVD EYTSYYSGAHWDLKPETAMNYELGAEWQFMPGARLSLTGYIINMNDEIVWNGVTYRNE NLDETKHQGVEAAVHVPVCKWAYVFGNLTYQDATMANGPYDGNKIPLAPEWMAAAGVG LEPLSGLNVLLRWNYYGQRYLGNDYANAFDKMDAYNTIDAAVSYRWQRYKVFVNATNI FGEDYSTLGYCNAWSGVSTYYPMPEAQVWGGVSIDF" misc_feature complement(867070..868932) /locus_tag="Deba_0771" /note="Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]; Region: FepA; COG4771" /db_xref="CDD:34384" misc_feature complement(867070..868887) /locus_tag="Deba_0771" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature complement(order(868561..868587,868621..868653, 868696..868719,868747..868764,868801..868830, 868858..868887)) /locus_tag="Deba_0771" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature complement(order(868045..868047,868108..868110)) /locus_tag="Deba_0771" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 869522..870658 /locus_tag="Deba_0772" /db_xref="GeneID:9493222" CDS 869522..870658 /locus_tag="Deba_0772" /note="COGs: COG1865 conserved hypothetical protein; InterPro IPR002808; KEGG: ppd:Ppro_1265 hypothetical protein; PFAM: protein of unknown function DUF105; SPTR: A1ANG6 Putative uncharacterized protein; PFAM: Adenosylcobinamide amidohydrolase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806738.1" /db_xref="GI:302342209" /db_xref="GeneID:9493222" /translation="MLIATCYDAVEIHRVEKFIYGRFLRPHRVISTCRAAGGLRDDLE CVYNHQVCEPSGPSHNAAINAWEDPIAYRRMVCQAAGAPPETSAGMATAANMMNAALV GLAFRGVEVFCLATAGVEGNAGRAGDPATHHEHDGRFEDLAQDGPPAHGTINLMFFLG QELTAGGMVRAVITATEAKAVALQELAIGSRYSSGPATGTGTDQIVIAARLGGTPATS PSKHTKLGQLIAESAIQAIKETLAVQNDLSASGQCSCRAHLARFAAGRDLAASAAALL DGDHAALLRQNFDVIDRDPPTVAAAAALAHVADELAWGILPASAAPEILAAQAAQMAV AACGAPELWPALRQSLAPPMGHAPEQVFDLACQALALGFARKWR" misc_feature 869585..870232 /locus_tag="Deba_0772" /note="Adenosylcobinamide amidohydrolase; Region: CbiZ; cl00808" /db_xref="CDD:154012" gene 870799..871542 /locus_tag="Deba_0773" /db_xref="GeneID:9493223" CDS 870799..871542 /locus_tag="Deba_0773" /note="COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: dal:Dalk_2985 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; SPTR: B8FL40 Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_003806739.1" /db_xref="GI:302342210" /db_xref="GeneID:9493223" /translation="MSVQSIDRAVDIMSLFSAEATRLGITEIAAALGLSKTTVHGLAS TLKARGLLRQDAETRKYSLGMKLFELGAMLTASLKLNRVGQGAVQRLANDTGLNARLA VWERPAMLVALTAFPGMPSPPLNQMGPRVPAHCSAIGKAVLMSLPAADLARWLDAAKL ERFTPNTLIDRQALERQLGEFRRQGFAEDNEEFLLGLCCRAAPIKERGVVAGSVSLSA APEQLAGRDGRELARLLLAAATEISRAMA" misc_feature 870805..871074 /locus_tag="Deba_0773" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 871180..871464 /locus_tag="Deba_0773" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 871606..872868 /locus_tag="Deba_0774" /db_xref="GeneID:9493224" CDS 871606..872868 /locus_tag="Deba_0774" /note="COGs: COG3875 conserved hypothetical protein; InterPro IPR018657; KEGG: afu:AF0049 hypothetical protein; PFAM: Protein of unknown function DUF2088; SPTR: O30187 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2088)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806740.1" /db_xref="GI:302342211" /db_xref="GeneID:9493224" /translation="MKIRLPELMWYGNLDVEIELPDDWDVTFCPMRGAERPALGQEAI AQAIKNPIGCPPLHQLARGKKSACIVFDDITRPTRCAELAPVVIEELLAAGLAEDDIT FVCALGSHGAHTAHEFRKKLGADILERFRVYNHNIYENCVEVGVTSRGARLLINREVA QAQVKVGLGCVTAHAQVGFSGGGKIILPGVSHIDTISHFHIDVEKSAVETTGLGNFDN NILRFEIEEAVRLAKLDFKVDVVTNGRGATIGVFAGDPIAEHLQAVAAAREIYATEPT PTDMDVVVVNAFAKANEMAIAILLGAIATGNFQGSVVCLANAPEGQVTHYLARSFGRD YGGRQYPIGFVPPGLNVVVVAPHMDKTFGDWVANPQDAHWVKSWDKALELLKKWHGPG ARCAVLPNATMQYFVNQTGSAHDVSTAG" misc_feature 871612..872820 /locus_tag="Deba_0774" /note="Uncharacterized conserved protein [Function unknown]; Region: COG3875" /db_xref="CDD:33664" misc_feature 871636..872205 /locus_tag="Deba_0774" /note="Domain of unknown function (DUF2088); Region: DUF2088; pfam09861" /db_xref="CDD:150523" gene complement(872927..873496) /locus_tag="Deba_0775" /db_xref="GeneID:9493225" CDS complement(872927..873496) /locus_tag="Deba_0775" /note="COGs: COG4843 conserved hypothetical protein; KEGG: dal:Dalk_1835 hypothetical protein; SPTR: B8FFX7 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2179)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806741.1" /db_xref="GI:302342212" /db_xref="GeneID:9493225" /translation="MFWGIEWSVWLLGLGIFVARVADVSAGTMRTIAIVSGRTLTAFF LGLIEISVWLVVISAVITQIADEPLLGVFYALGFSVGNVAGIKLEKRLALGHVIIHAI SPRSSLAMAQALRDAGYAVTTFTGQGKDGPVIEVLLACRRKDAQKATDIITSLDPDAF YVTEQASHVSKVYGPLVPPTGWRAVLKKK" misc_feature complement(872930..873469) /locus_tag="Deba_0775" /note="hypothetical protein; Provisional; Region: PRK04164" /db_xref="CDD:179759" misc_feature complement(873002..873469) /locus_tag="Deba_0775" /note="Uncharacterized protein conserved in bacteria (DUF2179); Region: DUF2179; cl10498" /db_xref="CDD:195976" gene complement(873864..877145) /locus_tag="Deba_0776" /db_xref="GeneID:9493226" CDS complement(873864..877145) /locus_tag="Deba_0776" /EC_number="5.4.99.2" /note="COGs: COG1884 methylmalonyl-CoA mutase N-terminal domain/subunit; InterProIPR006159:IPR006098:IPR006158:IPR014348:IPR 016176:IPR005129:IPR006099; KEGG: dal:Dalk_2754 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; ArgK protein; PRIAM: methylmalonyl-CoA mutase; SPTR: B8FKS4 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA mutase, large subunit" /protein_id="YP_003806742.1" /db_xref="GI:302342213" /db_xref="GeneID:9493226" /translation="MTEPIKPYTPKNPVRAVTAASLFDGHDAAINIIRRILQGTGVEV IHLGHNRSVSDVVRAAVQEDVHAICASCYQGGHVEFFKYIVDLLKENNCGHIKVFGGG GGVIVPEEIAELHAYGVTKIYSPEDGRRMGLQGMINHLVRTVDYSLGNGQKPNDLAKL SADRPDLVARAITLVERAALAGQDMSQWRAALKPLIGERPAPVVGVTGTGGAGKSSLT DELLIRFLHDFPQKRVAVISVDPTRRKSGGALLGDRIRLNSMESERVYLRSLATRSSG LEISQGLDDVIAVTRAAGFDLILVETAGIGQGDAAVVDHVDISLYVMTSEFGAASQLE KIDMLDFADIVVINKFDRRGAEDALRDVRKQLQRNRGLWDVDPEALPVYGAIAARFND DGVTALYLGLLDKIRQKTGVEFASPRQRPAINCSADKTIIVPAHRERYLSEIAEAIRG YHQKTRQQAALVRRSWQMKNTHDYLAKLWQGDKERKPALDALRAEVHKLEEGLSERTH QLLAQWPQLQKAYSGSKYKYKVRDKQFSVPLTTRSLCGLDIPKVCLPQWEDPAEIYSW MRAENLPGNFPFTAGVFPFKRTDEDPTRMFAGEGDPFRTNRRFKLLSRDAKAARLSTA FDSVTLYGWDPDLRPDIYGKVGNSGVSICTLDDMKVLYDGFDLCDPNTSVSMTINGPA PIMLAFFFNTALDQQLAKFQQEQGRQPSDDERRQIMERVLRTARGTVQADILKEDQGQ NTCIFSIDFALRMMGDIQEFFIKNDVRNFYSVSISGYHIAEAGANPITQLALTLANGF TYVEYYLARGMNIDDFAPNLSFFFSNGMDPEYTVIGRVARRIWAVAMSERYGAGPRSQ MLKYHIQTSGRSLHSQEIQFNDIRTTLQGLCAIYDNCNSLHTNAYDEAITTPTEESVR RALAIQLIINREWGLAKNQNPLQGAFIVNELTDLVEEAVLAEFDRLTARGGVLGAMET GYQRSKIQDESIYYEIQKHTGELPIIGVNTFLPAGVEQEQEPCVVELARATEEEKQSQ LQRLAQFHRAHAEQAPAALHNLQQVALDGGNIFAELINTVRHCSLGQITKALYDVGGM YRRGM" misc_feature complement(876732..877103) /locus_tag="Deba_0776" /note="methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen...; Region: MM_CoA_mut_B12_BD; cd02071" /db_xref="CDD:30209" misc_feature complement(order(876750..876752,876768..876770, 876777..876779,876831..876833,876921..876929, 876933..876941,877050..877052,877059..877079)) /locus_tag="Deba_0776" /note="B12 binding site [chemical binding]; other site" /db_xref="CDD:30209" misc_feature complement(877068..877070) /locus_tag="Deba_0776" /note="cobalt ligand [ion binding]; other site" /db_xref="CDD:30209" misc_feature complement(876093..876506) /locus_tag="Deba_0776" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature complement(874134..875618) /locus_tag="Deba_0776" /note="Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM)-like family; contains proteins similar to MCM, and the large subunit of Streptomyces coenzyme B12-dependent isobutyryl-CoA mutase (ICM). MCM catalyzes the isomerization of methylmalonyl-; Region: MM_CoA_mutase; cl00817" /db_xref="CDD:193947" gene complement(877176..877814) /locus_tag="Deba_0777" /db_xref="GeneID:9493227" CDS complement(877176..877814) /locus_tag="Deba_0777" /note="InterPro IPR001647:IPR012287:IPR009057; KEGG: dal:Dalk_2753 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FKS3 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003806743.1" /db_xref="GI:302342214" /db_xref="GeneID:9493227" /translation="MTPSQREASARQIPTVVKDQELVQRRRRQIADAAVSLFLQKGFH KTTTREIAKSAGISIGSLYEYVQTKEDVLYLVCQAIHQEMEQSLQAHIAHGGSGARAL ESAIQAYIAACDGMGRHITFIYQETKSLPAESKRYVLEHELRITGMFIGLLRRGVEDY SLRPLNRGEIELMAHNIMVLGHMWAFRHWALAGIGLAKYIEDQSALLMGQLV" misc_feature complement(877182..877745) /locus_tag="Deba_0777" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(877596..877727) /locus_tag="Deba_0777" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 878344..879018 /locus_tag="Deba_0778" /db_xref="GeneID:9493228" CDS 878344..879018 /locus_tag="Deba_0778" /note="KEGG: ote:Oter_2531 hypothetical protein; SPTR: B1ZT24 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806744.1" /db_xref="GI:302342215" /db_xref="GeneID:9493228" /translation="MEWINVAKESLEFAFASISVGALVYGAWIGGKAVKKYQMQNEID AKYSLIAADNEIFAVVRSKPFLESFFMVCDDNILPKDKADRLLSALLHGTSGSYKRWE NVQDIVDWPWEENDFFSEGKDRFRYGTYLAERIIILLTLAHGAWQDRLISKEDYHGYT NYIDTIGHHPLFLAAIHYWARHRFIRQSFAAELRNRLLMSQEAKEMIHVIYPQIESDK WLDMIR" gene 879139..880251 /locus_tag="Deba_0779" /db_xref="GeneID:9493229" CDS 879139..880251 /locus_tag="Deba_0779" /note="COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197:IPR017200; KEGG: sfu:Sfum_3058 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SPTR: A0LMT0 radical SAM domain protein; PFAM: radical SAM superfamily" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003806745.1" /db_xref="GI:302342216" /db_xref="GeneID:9493229" /translation="MHQHPHGAHPGGHPAGLAKNEGGVPPLRLLAWETTRRCNLRCLH CRAGAEDECYPDELTTAQGEELLRDLATMGRPVVILTGGEPLLRHDIFHLAAYGHGLG LRMVMGTNGVLITPEVARRLVEAGIQRISVSIDGPDAQSHDVFRGQQGAFEGSMAGIA AARAAGLEFQVNTTVTRGNLPWMQAIQDLAQRLGAVAHHIFLLVPTGRGRALSGEIIS AEEYEDVLNWFYDQRGKACMELKATCAPHYFRVLRQRAKADGLDLTFQSHGLDAVSKG CLGGQGFAFVSHVGQVQACGYLDLPAGDVKKQPFSRIWQESELFGKLRDPNLLGGKCG RCEYRRVCGGCRARAFEATGDVLAEEPLCVHQPALR" misc_feature 879223..880239 /locus_tag="Deba_0779" /note="putative heme d1 biosynthesis radical SAM protein NirJ2; Region: rSAM_NirJ2; TIGR04055" /db_xref="CDD:188570" misc_feature 879232..879771 /locus_tag="Deba_0779" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(879250..879252,879256..879258,879262..879264, 879268..879276,879379..879381,879385..879390, 879454..879456,879463..879468,879535..879537, 879658..879660,879742..879747) /locus_tag="Deba_0779" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature 879967..880227 /locus_tag="Deba_0779" /note="radical SAM additional 4Fe4S-binding domain; Region: rSAM_more_4Fe4S; TIGR04085" /db_xref="CDD:188600" gene 880747..882420 /locus_tag="Deba_0780" /db_xref="GeneID:9493230" CDS 880747..882420 /locus_tag="Deba_0780" /note="COGs: COG1150 Heterodisulfide reductase subunit C; InterProIPR009056:IPR017896:IPR012285:IPR009051:IPR 017900; KEGG: dal:Dalk_5066 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV6 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Nitrate reductase subunit gamma" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_003806746.1" /db_xref="GI:302342217" /db_xref="GeneID:9493230" /translation="MPNDNVTIVGLHLALTLFGLGMLFRLGAWLWRNVGDEARQAGAG ARALAAVSGLLGTIFSAKVVTLVKALVLDVLLQQKVYKQDKLRWAAHICIYVGFMLLL IFHALQSVVSVAVFDDFQSTLNPYLFLRNFFGLVVLAGVGVAIYRRVTIKPIKAISGG ADKIALTLLAVIMCSGVVLEGAKIISQRDFMRMNEDYGSLEGEELTALKAYWAKNFSV AFSGEELPSDEETLAAGAELHADSCASCHSEPNAAFMSYAAAQVMKPAAGALDRLDAP SLLYYLHYFACLLGLIYLPFSKFLHIITSPIAMVVSQVMDEKTAAPAAVALRRAIDLD ACTHCGTCTLHCSVLASFQTMGNDGILPSEKLAAFRSLVAGDRLTDAQLFALRDANDI CTRCHRCTDLCPVGINLQGLWTALSQELEHRGVVSTFVVARQAVSGLGRPGKGQAVKL ARPEKSLVFQADKFRKCFECQTCTNSCPVVAAHAEPIKSLDLVPHQIMHALAMGMVDL AMGARMNYDCLTCYRCQEQCPQGVPITDILYELKNMGYQRVKSGLEDVA" misc_feature 880996..881667 /locus_tag="Deba_0780" /note="Nitrate reductase gamma subunit; Region: Nitrate_red_gam; cl00959" /db_xref="CDD:163938" misc_feature 881740..>882072 /locus_tag="Deba_0780" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" misc_feature <882085..>882360 /locus_tag="Deba_0780" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" gene 882470..883336 /locus_tag="Deba_0781" /db_xref="GeneID:9493231" CDS 882470..883336 /locus_tag="Deba_0781" /EC_number="1.8.98.1" /note="COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: dal:Dalk_5067 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: B8FDV7 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain" /codon_start=1 /transl_table=11 /product="CoB--CoM heterodisulfide reductase" /protein_id="YP_003806747.1" /db_xref="GI:302342218" /db_xref="GeneID:9493231" /translation="MQFAWFRGCKIPFYMSHYETASRAVLDKMGVGLVDMEFGCCGYP VRNQDAVAHLVSAARNLAMAEQAGLDLLTPCKCCFGSFKHAIHALAEDQGLLAKVNGV LAGEGLRYQGKANVRHILQVLHDEVGLKALKDKITRRFGGLKVAVHYGCHALRPSAVT QFDDPFGPKLFDELVELTGAKSVAWGRKLDCCGAPLWEKNDDLSRKIAKMKIDSGHQA GAAIICSACTYCQIQFDTIQAQMLQDDKELDALPSLLYPQLLGLALGLPEDKLGLQAN AVAGAWVANHME" misc_feature 882470..883192 /locus_tag="Deba_0781" /note="Heterodisulfide reductase, subunit B [Energy production and conversion]; Region: HdrB; COG2048" /db_xref="CDD:32231" misc_feature 882995..883174 /locus_tag="Deba_0781" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene 883514..883765 /locus_tag="Deba_0782" /db_xref="GeneID:9493232" CDS 883514..883765 /locus_tag="Deba_0782" /note="KEGG: pag:PLES_30211 protease; SPTR: Q9I1J2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="protease" /protein_id="YP_003806748.1" /db_xref="GI:302342219" /db_xref="GeneID:9493232" /translation="MARVNALVGAYRLAHQAGDGRSLERLRLVAREVGRELPAAAELL RSGLAEQELRALCWNVSSFLSDQQVELIFDLKLRPPGPR" gene 883803..885536 /locus_tag="Deba_0783" /db_xref="GeneID:9493233" CDS 883803..885536 /locus_tag="Deba_0783" /note="COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR000014:IPR003593:IPR002078:IPR000700:IPR 009057:IPR020441:IPR013767:IPR013656:IPR002197; KEGG: dal:Dalk_2273 PAS modulated sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; PAS fold domain protein; helix-turn-helix Fis-type; SMART: ATPase AAA; PAS domain containing protein; SPTR: B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806749.1" /db_xref="GI:302342220" /db_xref="GeneID:9493233" /translation="MIDSAEKNAPPSLAGDGVLLLDSALMIMGLNMTARHLLGGGVEP GQHFRPERFFRGEGLDEVVGAIGAALGRGESRLGLRAAMTDATGHTFSADCAASPFFE RPGRIGGVIFNFRDVDFAPLREGRFEPSERLPEMPRMAYSALVDNLAEGIFTINTRWR ITSFNQAAERLTGYRRQEVLGRHCWDIFRSDLCEAGCPLRTTLDSGVTRMDQDVRMLH KEGKRLGILVNTSVIKDAGGTVVGAVETFRPLLEQEQAQDVGDNGPHFTDIIGQSQPM RRLFEMLPDVAASEASVLIQGESGTGKELFARAIHHNSPRRQGPFVAVNCSALAETLL ESEMFGHEKAAFTGAVRSRVGRFELARGGTLFLDEIGELKPELQVKLLRVLEQKVFER VGGTRLITMDARIISATNRDLGQALKDGRFREDLFYRLRTVPMTLPPLRRRQGDMPLL VRGFIEKLNVKYNKQVRSVDPKVMKVFNNYAWPGNVRELERVMEHAFVFVRGPVIFPH NLPALDEFAHERLSGPAAADRPPRPGQDGEREAIAEALRKAGGRRGEAAALLGLSRTS LWRRMKALGLA" misc_feature 884223..884573 /locus_tag="Deba_0783" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 884244..884552 /locus_tag="Deba_0783" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(884292..884294,884304..884306,884322..884324, 884361..884372,884448..884450,884463..884465) /locus_tag="Deba_0783" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(884352..884354,884364..884366,884388..884390, 884397..884402,884484..884486,884490..884492) /locus_tag="Deba_0783" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature <884544..885530 /locus_tag="Deba_0783" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 884673..885101 /locus_tag="Deba_0783" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 884691..884714 /locus_tag="Deba_0783" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(884694..884717,884904..884906,885030..885032) /locus_tag="Deba_0783" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 884892..884909 /locus_tag="Deba_0783" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 885087..885089 /locus_tag="Deba_0783" /note="arginine finger; other site" /db_xref="CDD:99707" gene 885798..886262 /locus_tag="Deba_0784" /db_xref="GeneID:9493234" CDS 885798..886262 /locus_tag="Deba_0784" /note="COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012335:IPR012336; KEGG: dal:Dalk_2272 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: B8FIH5 NADH dehydrogenase (Ubiquinone) 24 kDa subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase, E subunit" /protein_id="YP_003806750.1" /db_xref="GI:302342221" /db_xref="GeneID:9493234" /translation="MSAQAVQLDELIDRYPAKPEYLIFLLQDIQAAYGYISPEAMDRV CDHAGVPKSRAYSVATFYQSFSLKPKGEHKIRVCMGTACHLKGAQRLADAVERKLGIK PDETSPDLKFSLEAVHCLGACAMAPVVVVDDEYHAGATPGKLDKLLDNVARD" misc_feature 885816..886244 /locus_tag="Deba_0784" /note="NADH-quinone oxidoreductase, E subunit; Region: nuoE_fam; TIGR01958" /db_xref="CDD:131013" misc_feature 886011..886244 /locus_tag="Deba_0784" /note="TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of...; Region: TRX_Fd_NuoE; cd03064" /db_xref="CDD:48613" misc_feature order(886017..886019,886023..886025,886143..886151) /locus_tag="Deba_0784" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48613" misc_feature order(886029..886031,886044..886046,886152..886154, 886164..886166) /locus_tag="Deba_0784" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48613" gene 886284..888185 /locus_tag="Deba_0785" /db_xref="GeneID:9493235" CDS 886284..888185 /locus_tag="Deba_0785" /EC_number="1.6.99.5" /note="COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR017896:IPR012335:IPR012336:IPR011538:IPR 019554:IPR019575:IPR001450:IPR017900:IPR019825:IPR001949; KEGG: dal:Dalk_2271 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: B8FIH4 NADH dehydrogenase (Quinone); PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase (quinone)" /protein_id="YP_003806751.1" /db_xref="GI:302342222" /db_xref="GeneID:9493235" /translation="MAKAISMESLSEFRLASRQALDDLRQQILAAKDPAKTEIVVCHG TGCLAAGSPKVTEAMRKALAEADLDIEVRPGIKTTGCHGFCSRGPLVIIQPEGIFYQK VKPEDVGEIIQSTIIEGQPVERLLYRNPNTGEKIIKAADIPFYNLQQRVVLRNIGRID PTDIADSIAIGSYQALAKALLEMTPEHVVREVEKSGLRGRGGAGFPTGRKWRGAMAAA KKKGGPVYVVCNGDEGDPGAFMDCMVMEGDPHAVIEGMILGAFALGAHQGFIYVRAEY PVAIKHLTMAMDQARTLGLLGENILGSGFSFDIQINRGAGAFVCGESTALFTSIEGKA GEPRPKYVRSAEEGLWGKPTVLNNVETWANVPQIIENGGQWFAGIGVPHSTGTKVFSL VGKVNNVGLVEVPMGVPLRTIVEDIGGGVPGGKPFKAVQTGGPSGGCLPYALRDVAVD FDSLTKAGSMMGSGGMIVMDERDCVVDVARYFLRFLEEESCGKCLPCRLGVTRLREML DEISAGRGKEEDIEAILSLSAAVKDGSLCALGGSAPNPVLTTLKYFRDEYLAHITDKK CPAGVCKELITFAIDVDKCTGCGSCARLCPQSAVSGEKKKPHQIDQSLCIRCGVCYDS CKFGAVVIS" misc_feature 886398..886628 /locus_tag="Deba_0785" /note="Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:; Region: TRX_Fd_family; cd02980" /db_xref="CDD:48529" misc_feature order(886401..886403,886515..886523) /locus_tag="Deba_0785" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48529" misc_feature order(886407..886409,886422..886424,886524..886526, 886536..886538) /locus_tag="Deba_0785" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48529" misc_feature 886701..887969 /locus_tag="Deba_0785" /note="NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]; Region: NuoF; COG1894" /db_xref="CDD:32078" misc_feature 886857..887384 /locus_tag="Deba_0785" /note="Respiratory-chain NADH dehydrogenase 51 Kd subunit; Region: Complex1_51K; pfam01512" /db_xref="CDD:144926" misc_feature 887448..887603 /locus_tag="Deba_0785" /note="SLBB domain; Region: SLBB; pfam10531" /db_xref="CDD:192616" misc_feature 887709..887846 /locus_tag="Deba_0785" /note="NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; pfam10589" /db_xref="CDD:192637" misc_feature <888015..>888182 /locus_tag="Deba_0785" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature 888033..888170 /locus_tag="Deba_0785" /note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838" /db_xref="CDD:193313" gene 888217..888822 /locus_tag="Deba_0786" /db_xref="GeneID:9493236" CDS 888217..888822 /locus_tag="Deba_0786" /note="COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterProIPR001041:IPR017896:IPR001450:IPR017900:IPR 000283; KEGG: dal:Dalk_2270 ferredoxin; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FIH3 Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_003806752.1" /db_xref="GI:302342223" /db_xref="GeneID:9493236" /translation="MIKFTINDQVVEAQPGWTVLETARHYGLHIPTLCYHEAVSPSGA CRLCVVELRDGDWSKVVISCMYPVAEGINIYTDSPKVQNVRRWILEMLLAQCPAAKEV RDLAAQYGVTKTRFKINDPNEDCMLCGLCVRVCEEVVGAKAISTVGRGAHKQVAPPYM QPTDDCVACGSCLTICPTGAMARRFDMLRGKPKVILGAGSK" misc_feature 888220..888438 /locus_tag="Deba_0786" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(888304..888309,888316..888318,888343..888345, 888349..888360,888403..888408) /locus_tag="Deba_0786" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(888316..888318,888349..888351,888358..888360, 888406..888408) /locus_tag="Deba_0786" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature <888511..>888753 /locus_tag="Deba_0786" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature 888589..888756 /locus_tag="Deba_0786" /note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838" /db_xref="CDD:193313" gene 888841..891273 /locus_tag="Deba_0787" /db_xref="GeneID:9493237" CDS 888841..891273 /locus_tag="Deba_0787" /note="COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR017896:IPR001450:IPR003813; KEGG: dal:Dalk_2269 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FIH2 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta" /codon_start=1 /transl_table=11 /product="methyl-viologen-reducing hydrogenase subunit delta" /protein_id="YP_003806753.1" /db_xref="GI:302342224" /db_xref="GeneID:9493237" /translation="MGNDYKIGVFLCQCGGRVSPAVDLAKLTELIMADGLVAHCQTLP FSCQAPGLAEINKAVTELGLDRLIVAGCESRLMAKRFEDELAAVGLRKGQIEVVNLRD HVAAVHELAPEAMAEKGARLILAAAAGLAAMVPSVEAKVELNGPVMIVGGGVASYAAA HELAGRGVEAIMTAYTDNIWDELRMLHEHYPGERLYYPRLEQVMREVEQSPLVRRITV GELSGLLGRTGDYTVSFASPEGGPARAYQAGAVIACLDGEMQNQGSDFGHDGVSVICH TEAEELFWVKGTPKGRYVFWINDYEAGLGQFAYLSSRAAWNMARYVRENNKLADVTIL YNHKMQIPLSASERKHSRELEVKWLAYDGALRPTVQAGYLTYCDPADATEKELAWDRL VLSPRRAVGLEARRVAEILGLHAHDNGFLLQNHAKVRPEMHGRDETPLAGSASYPCDL SEALRQGRRVAQQIAELYDKAKAGQLHAPRMVCVVDESKCIGCGLCKEICDCGGIEPV QGRGGNIPRHVDPMLCTGGGTCAAACPYHALTLQNNSTAQREARAGKLAAQLGELDVL AYGCAWGGLAAADNAGSKGLAYDPRLHLLPVGCIGQLDPSVLARAFLDGANGVLLLGC PPESCHHSYGLDHTWSRVSLLKKLLGLCGFDRRRIALAHCDMNQPAAFINSVNAFLAT IEQLGPIERTPQNVEKLQGVYDTVNNSRVRWVLGASLRRPWEEVYPGDQRNALNYDRD LLGVIGEELVASRVRRVLQREKRPMPVSELVEAIAEKQDAIMDSLHEMVSEGLIHRQH RDGEAIYTLPLR" misc_feature 888856..>889539 /locus_tag="Deba_0787" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature <889993..890484 /locus_tag="Deba_0787" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature 890533..890901 /locus_tag="Deba_0787" /note="Methyl-viologen-reducing hydrogenase, delta subunit; Region: FlpD; cl00831" /db_xref="CDD:120156" gene 891430..891876 /locus_tag="Deba_0788" /db_xref="GeneID:9493238" CDS 891430..891876 /locus_tag="Deba_0788" /note="COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR000485:IPR011991:IPR011008; KEGG: dal:Dalk_4142 transcriptional regulator, AsnC family; SMART: Transcription regulator, AsnC-type; SPTR: B8FMV6 Putative transcriptional regulator, AsnC family; PFAM: AsnC family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AsnC family" /protein_id="YP_003806754.1" /db_xref="GI:302342225" /db_xref="GeneID:9493238" /translation="MDEKDKAILREVQSRLPIAERPFLELGRAVGLGEGEVIERLAAM KRSGVIRRIGGNFNSASLGFAATLCGAKVAPEKLDAFVAAVNAHHGVTHNYLRSHEFN VWFTFIAEDMAQIDEHLARLAEQTGVDDICSMPALEMFKIKVDFPI" misc_feature 891430..891873 /locus_tag="Deba_0788" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature 891430..891735 /locus_tag="Deba_0788" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 891973..892771 /locus_tag="Deba_0789" /pseudo /db_xref="GeneID:9493239" gene complement(892778..893185) /locus_tag="Deba_0790" /db_xref="GeneID:9493240" CDS complement(892778..893185) /locus_tag="Deba_0790" /note="InterPro IPR001387:IPR010982; KEGG: rsq:Rsph17025_1373 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: A4WSA6 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain protein" /protein_id="YP_003806755.1" /db_xref="GI:302342226" /db_xref="GeneID:9493240" /translation="MMRETHEIIGAHVGRRLKHMRGQRTQAQFAAELGLSQAQYNRYE TGKRLAPDRVLEQVAEICGVSPRQVIWGDEDGAQADDLARQVALLVEMLEGDDLEDLY WFLKNKIEQVAKRRKDQARQAKQALEELRAKAG" misc_feature complement(892988..893146) /locus_tag="Deba_0790" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature complement(order(893051..893053,893120..893122, 893132..893134)) /locus_tag="Deba_0790" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(order(893054..893056,893123..893125)) /locus_tag="Deba_0790" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature complement(order(893048..893053,893063..893065, 893072..893074,893105..893110)) /locus_tag="Deba_0790" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene complement(893266..893934) /locus_tag="Deba_0791" /db_xref="GeneID:9493241" CDS complement(893266..893934) /locus_tag="Deba_0791" /note="COGs: COG1309 Transcriptional regulator; InterProIPR001647:IPR012287:IPR015893:IPR011075:IPR 009057:IPR013570; KEGG: dal:Dalk_3280 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YsiA domain protein; SPTR: B8FJ43 Transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003806756.1" /db_xref="GI:302342227" /db_xref="GeneID:9493241" /translation="MASQSKTEARRSKILKAAQKVFAHKGFHDATIAEIARAAGVSEG SIYEYFSSKEGVLFAIPLEVTRESHELSQVHLSLIRGAANRLRALVYMYLSLYESNPD YSSVILLTLKQNQKFRETEAYEMIRDGFRNITAIIKSGMANGEFRPDINPYVVRSVLM GAVDHLTTNWLMDGRRGSLTELVDPVLDVVMEGVLTKDPRSASDLHWSAWQRTGRASG PQEA" misc_feature complement(893371..893934) /locus_tag="Deba_0791" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(893755..893895) /locus_tag="Deba_0791" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" misc_feature complement(893356..893691) /locus_tag="Deba_0791" /note="YsiA-like protein, C-terminal region; Region: TetR_C_4; pfam08359" /db_xref="CDD:116940" gene complement(894373..897273) /locus_tag="Deba_0792" /db_xref="GeneID:9493242" CDS complement(894373..897273) /locus_tag="Deba_0792" /note="COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014:IPR000160:IPR001610:IPR001633:IPR 000700:IPR013767:IPR013656:IPR013655; KEGG: pap:PSPA7_0717 hypothetical protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; PAS fold-3 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: A6UZ77 Putative uncharacterized protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)" /protein_id="YP_003806757.1" /db_xref="GI:302342228" /db_xref="GeneID:9493242" /translation="MRPACPNESDHCRDLASAQRRIAMLEDKLAQAAGDAYRGLFENL GVGVFRLTMAGQGRFLQANPALAALLGYDSAEELMSTPVSQVYPDQRERAFFARQVLQ NGFVADFELPLCRKDGRTIWAEASAAAQRDAEGRLLWIDGILTDVSQRRQAAEALRQS EQRFRGLSENAPDIIYTLSPDGRFTYVNRAWRRILGHAAEEVLGRYFIEFAPPDSVDD YRRLFKAVRDGKKTLYGAHPMLHKNGEVRHLAMSGAPNIDDMGRVTGMVGMLKDMSSQ IQAERALRHSEASLARAQKLAGLGNWELKLSNSRLSCSDEVFNIYDLPRRDPASLFGE IVSCMHDDDIDYVTRCFEKAFLQDEAVSFEHRIKRHDGQERVLRQVASVLRDDRGEPI SMIGAVQDITGIRASEEQMRLLARVFENTVEGIIVTDADGVIEMVNAAFCAITGFDAA EAVGARPSILSSGRHDAEFYQRMWRSLADQGHWQGEVWNRRKNGEAYPEWLTITAIKD KSDRTTHLVGVFHDITEAKRNEERITHQAYHDALTGLPNRQLFNDRLAMAIAQAHRGG HGLALLFLDLDNFKNINDSLGHAVGDMLLQAVAQRLTRWLREEDTVARLGGDEFVMLI QGASDPDYIMQVARRILDSMSQPFAVGPHELYVTASIGVTIHPHDGHDAQTLVANADL AMFRAKDEGRNNIKLFTPAMNAKVMRRMELEANLRKALEREEFEVFYQPKVELRSDKV VGVEALVRWRRPDSVVVSPDEFIPICEETGLILPLGKWVLEQACSRAKYWHDMGFDGL NVSVNLSPRQFQDNHLVDHVGEILAQTGLAPHCLELEITEGVVMHSVDEAIETMNRLS SMGVRLSLDDFGRGYSSLYYLKRFPMSSLKIDRSFVADIATDPDDASIVNTIISMSRS LNLQVVAEGVETKEQLDFLRSKRCDQMQGYYFSRPLPARELTELLEGLRPAV" misc_feature complement(896803..897165) /locus_tag="Deba_0792" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(896959..897165) /locus_tag="Deba_0792" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(896425..896796) /locus_tag="Deba_0792" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(896455..896763) /locus_tag="Deba_0792" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(896542..896544,896557..896559, 896635..896646,896683..896685,896701..896703, 896713..896715)) /locus_tag="Deba_0792" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(896515..896517,896521..896523, 896605..896610,896617..896619,896641..896643, 896653..896655)) /locus_tag="Deba_0792" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(896080..896346) /locus_tag="Deba_0792" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature complement(896068..896190) /locus_tag="Deba_0792" /note="Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); Region: PAC; smart00086" /db_xref="CDD:128397" misc_feature complement(895675..896055) /locus_tag="Deba_0792" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(895705..896007) /locus_tag="Deba_0792" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(895792..895794,895807..895809, 895885..895896,895933..895935,895951..895953, 895963..895965)) /locus_tag="Deba_0792" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(895765..895767,895771..895773, 895855..895860,895867..895869,895891..895893, 895903..895905)) /locus_tag="Deba_0792" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(895189..895662) /locus_tag="Deba_0792" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(895420..895422,895549..895551)) /locus_tag="Deba_0792" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(895417..895428,895432..895434, 895498..895500,895510..895512,895522..895527, 895534..895536)) /locus_tag="Deba_0792" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(895357..895359,895444..895446)) /locus_tag="Deba_0792" /note="I-site; other site" /db_xref="CDD:143635" misc_feature complement(894412..895134) /locus_tag="Deba_0792" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene 897487..897948 /locus_tag="Deba_0793" /db_xref="GeneID:9493243" CDS 897487..897948 /locus_tag="Deba_0793" /note="InterPro IPR008254; KEGG: sat:SYN_01229 flavodoxin; SPTR: Q2LW80 Flavodoxin; PFAM: NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="flavodoxin" /protein_id="YP_003806758.1" /db_xref="GI:302342229" /db_xref="GeneID:9493243" /translation="MKRILIVHHSQSGNTRRMAQAVAQGAALVEGVETLARTAAQATL EDLLSCHGLALGSPEYFGYMAGALKDFFDRTYEAARGRREIFKLPYVAFISAGNDGTG ALGHIERIALGYQFRKVQEPVLAVGPLGDEALERCRLLGQTLAAGCEAGLW" misc_feature 897487..>897711 /locus_tag="Deba_0793" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 898115..898645 /locus_tag="Deba_0794" /db_xref="GeneID:9493244" CDS 898115..898645 /locus_tag="Deba_0794" /note="KEGG: dma:DMR_26440 hypothetical membrane protein; SPTR: C4XUB3 Hypothetical membrane protein; PFAM: Protein of unknown function (DUF2975)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806759.1" /db_xref="GI:302342230" /db_xref="GeneID:9493244" /translation="MNDLERIKRASRRLKSFCTALLFFIPLAVAVGWTFWDKTPLTQL NLPVAPNPEHPAIVFVLGFMISMIPAGVMMYAVQRMGRLFDLYARGIIFGQQNVACYR SLGWAVIAWVAADFISQPLHGLVLTWFNPAGQRLLILGINSNMLMGLFSGAAVLTVAW VMDEARKIEEDQALII" misc_feature 898361..898639 /locus_tag="Deba_0794" /note="Protein of unknown function (DUF2975); Region: DUF2975; pfam11188" /db_xref="CDD:151630" gene 898666..898872 /locus_tag="Deba_0795" /db_xref="GeneID:9493245" CDS 898666..898872 /locus_tag="Deba_0795" /note="COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: glo:Glov_0100 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; SPTR: B3E9H1 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="YP_003806760.1" /db_xref="GI:302342231" /db_xref="GeneID:9493245" /translation="MTIVINLDVALARRKMKSKDLAERVGITEQNLSLIKTGKVKGVR LATLDAICRELNCQPGDILAYQPD" misc_feature 898666..898869 /locus_tag="Deba_0795" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene 898994..899992 /locus_tag="Deba_0796" /db_xref="GeneID:9493246" CDS 898994..899992 /locus_tag="Deba_0796" /note="InterPro IPR020080:IPR013838; KEGG: ppd:Ppro_2085 hypothetical protein; SPTR: A1AQS3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806761.1" /db_xref="GI:302342232" /db_xref="GeneID:9493246" /translation="MRDIRRNRIILLGLAWLVLLPGTAAAAQAPAASADDGQAVVWSV DAKVKRLFDSYTSYEFGNPDPPYQEPLSRLEFALDSWWAGVEITRWTPRWSVGLQIMR NLTDKVDGVMADSDWLDPDHTKVRTVYSESDVRLKPCYDVRAWADVSLAPWLPLPAGL DLRPVGGLRWQRLDMIAFNLRQWEILPSDYVYFYGYPGDSIRFRQIYWQWFIGLKLDW RPLPTDYPGLRLSLQGDWAYVRGENKDQHLLREGNRITEESTSGQAWRAALGLEVPLG HNFSLELEAEYLTIDTTGSHHFTNNVDPYTVDETWDNGVRVWSQQCSVMLALRYSF" misc_feature <899354..899854 /locus_tag="Deba_0796" /note="Autotransporter beta-domain; Region: Autotransporter; cl02365" /db_xref="CDD:194296" gene 900093..901091 /locus_tag="Deba_0797" /db_xref="GeneID:9493247" CDS 900093..901091 /locus_tag="Deba_0797" /note="KEGG: ppd:Ppro_2085 hypothetical protein; SPTR: A1AQS3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806762.1" /db_xref="GI:302342233" /db_xref="GeneID:9493247" /translation="MPDLKLGSMLCLALAWLALLPTPAAAAQAPAQAANAGDGPAAVW LVEAKVKRLFDSHTSYEFGNPFPPYQEPLSRLEFDLDSWWGGVEISRRAALWSLSLEI MRNLTAKVDGVMADSDWTDEESTKVRTIYSESCLDMKPSYAVRAEADFSLAPWLGLPA WLDLRPVGGLRWQRLDLMAHDGTQWALESDGSWPAMALPGDGLRFKQTYWQYFIGLKL DWRPLPARHPGLRLGLRGDWAYVDAHNLDHHLLREGNRLTEEKTRGQAWRAALDLEAP LGGNFFLDLELDYLTIETTGNHRLYNDAIGLDFIVNNGVRVWSQQCGVMLSLRYDF" misc_feature <900423..901088 /locus_tag="Deba_0797" /note="Omptin family; Region: Omptin; cl01886" /db_xref="CDD:186487" gene 901165..902256 /locus_tag="Deba_0798" /db_xref="GeneID:9493248" CDS 901165..902256 /locus_tag="Deba_0798" /note="COGs: COG0371 glycerol dehydrogenase; InterPro IPR001670:IPR016160:IPR018211:IPR016205; KEGG: sth:STH1267 glycerol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: C1TM17 glycerol dehydrogenase-like oxidoreductase; PFAM: Iron-containing alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="iron-containing alcohol dehydrogenase" /protein_id="YP_003806763.1" /db_xref="GI:302342234" /db_xref="GeneID:9493248" /translation="MKRVLIAPGRYIQGPGVIDEIGRLLGGRYKNAFLIGGRRTLALV GEAVSGQLERNGAACRAELFGGEACQDEIDRLSAAARAAGADLIIAAGGGKAIDSGKT VAAGLDLPMAVLPTIAATDAPCSSVAVVYSPQGVFEKVNFLGRNPDYVIVDSQIIAQS PVEYLVAGMGDALATYWEADTCRRSQSRNAITGGWPPTRSALALARLCYDTLLEHGRG ALAAARRGVVSQDLEAIIEANVLLSGLGFESGGLATAHAVHNGLTVLPAAHGRMHGCK VAFGLIVQLVLEGRPRRDVEQVLAFCAEVGLPASLAALGLAEASRDDIRRVAEATVQA GETVHNTWFKVEAAMVEAAIWAADALSAA" misc_feature 901186..902199 /locus_tag="Deba_0798" /note="Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation; Region: GlyDH; cd08170" /db_xref="CDD:173929" misc_feature 901186..902184 /locus_tag="Deba_0798" /note="Iron-containing alcohol dehydrogenase; Region: Fe-ADH; pfam00465" /db_xref="CDD:189559" misc_feature order(901189..901197,901201..901206,901783..901785, 901792..901794,901861..901866,901873..901875) /locus_tag="Deba_0798" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173929" misc_feature order(901273..901275,901441..901449,901456..901458, 901465..901467,901510..901515,901519..901521, 901576..901581,901630..901632,901654..901656, 901675..901677,901687..901689,901930..901932, 901942..901944,901981..901983) /locus_tag="Deba_0798" /note="active site" /db_xref="CDD:173929" misc_feature order(901675..901677,901930..901932,901981..901983) /locus_tag="Deba_0798" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173929" gene complement(902337..903848) /locus_tag="Deba_0799" /db_xref="GeneID:9493249" CDS complement(902337..903848) /locus_tag="Deba_0799" /EC_number="1.11.1.6" /note="COGs: COG0753 catalase; InterProIPR011614:IPR020835:IPR018028:IPR010582:IPR 002226; KEGG: mbu:Mbur_0523 catalase; PFAM: catalase related subgroup; catalase domain protein; PRIAM: catalase; SPTR: Q12YH1 catalase; PFAM: catalase; catalase-related immune-responsive" /codon_start=1 /transl_table=11 /product="catalase" /protein_id="YP_003806764.1" /db_xref="GI:302342235" /db_xref="GeneID:9493249" /translation="MSDDKNRLTTAFGAPVADDQNSLTAGPRGPVLMQDTHLLEKLAH FDRERIPERVVHAKGAGAHGYFEVTADVTRYTRAKFLSQVGKRTEVFARFSTVGGEKG SADAARDPRGFAVKFYTEEGNYDMTGNNTPVFFIRDPLKFPDFIHTQKRNPATNLPDP NMFWDFLSLTPESIHQVTILFSDRGTPATFRHMNGYSSHTYKWHNAQGEYFWVQYHFK TDQGIKNLTRQEALHLRGADPDHATRDLYQAIERGEFPSWTLEMQILSPEQAKDFQWD IFDITKVWPHAEVPPIKVGKLVLNRNPVNYFAEVEQAAFSPGNLVPGIGISPDKMLQS RVFSYHDTHIHRLGPNYHLIPINQPRNAPERSYQRDGFMRTDDGGGAGPNYWPNSFGG PGPDAAYLEPPIPLEGQAARTPYGHPNDDFVQAGNLYRKVMTDQDREHLVGNIVEHLA GALPRIQLRQAAIFYKADPDYGLRVARGLGLDEARVKELAAMSQEARAAATSQ" misc_feature complement(902403..903845) /locus_tag="Deba_0799" /note="Catalase [Inorganic ion transport and metabolism]; Region: KatE; COG0753" /db_xref="CDD:31096" misc_feature complement(902412..903704) /locus_tag="Deba_0799" /note="Clade 3 of the heme-binding enzyme catalase; Region: catalase_clade_3; cd08156" /db_xref="CDD:163712" misc_feature complement(order(902472..902474,902484..902486, 902490..902492,902496..902501,902682..902699, 902727..902735,902739..902741,902748..902750, 902754..902759,902772..902774,902784..902795, 902799..902804,902808..902816,902823..902828, 902835..902843,902850..902852,902859..902861, 902865..902867,902889..902894,902913..902915, 902922..902924,902928..902933,902937..902939, 903015..903017,903021..903023,903036..903041, 903108..903110,903117..903122,903129..903131, 903141..903146,903153..903155,903162..903164, 903354..903356,903363..903365,903375..903392, 903408..903410,903417..903419,903423..903437, 903480..903485,903540..903545,903687..903689, 903702..903704)) /locus_tag="Deba_0799" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:163712" misc_feature complement(order(902832..902834,902844..902846, 903423..903425,903447..903449,903462..903464, 903564..903566,903681..903683)) /locus_tag="Deba_0799" /note="heme binding pocket [chemical binding]; other site" /db_xref="CDD:163712" misc_feature complement(order(902565..902570,902577..902579, 902991..903002,903195..903197,903201..903203, 903267..903269,903297..903299,903303..903305, 903312..903314,903324..903326,903453..903455)) /locus_tag="Deba_0799" /note="NADPH binding site [chemical binding]; other site" /db_xref="CDD:163712" gene complement(904004..904444) /locus_tag="Deba_0800" /db_xref="GeneID:9493250" CDS complement(904004..904444) /locus_tag="Deba_0800" /note="COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: dvm:DvMF_1241 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: B8DLC9 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family" /codon_start=1 /transl_table=11 /product="ferric uptake regulator, Fur family" /protein_id="YP_003806765.1" /db_xref="GI:302342236" /db_xref="GeneID:9493250" /translation="MTVPDQRLEQMIAAMQRAGRRLTPQRLAVLRLLAQGPGHPSVEQ LHAAVAAQFPSTSLATTYKTLAMLKELGQVLELAFADGGCRYDGRRPYPHPHVICTRC GAIEDPEYSSMERLYQEMTEKSGFAISHHRLDFFGLCPRCRGEG" misc_feature complement(904028..904375) /locus_tag="Deba_0800" /note="Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153" /db_xref="CDD:133478" misc_feature complement(order(904124..904126,904157..904159, 904163..904165,904184..904186,904328..904330)) /locus_tag="Deba_0800" /note="metal binding site 2 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature complement(904232..904276) /locus_tag="Deba_0800" /note="putative DNA binding helix; other site" /db_xref="CDD:133478" misc_feature complement(order(904052..904054,904103..904105, 904160..904162,904166..904168)) /locus_tag="Deba_0800" /note="metal binding site 1 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature complement(order(904031..904057,904061..904069, 904094..904099,904145..904153)) /locus_tag="Deba_0800" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133478" misc_feature complement(order(904028..904030,904139..904141, 904148..904150)) /locus_tag="Deba_0800" /note="structural Zn2+ binding site [ion binding]; other site" /db_xref="CDD:133478" gene complement(904579..905034) /locus_tag="Deba_0801" /db_xref="GeneID:9493251" CDS complement(904579..905034) /locus_tag="Deba_0801" /note="InterPro IPR006683:IPR012660; KEGG: pmy:Pmen_0555 hypothetical protein; PFAM: thioesterase ; thioesterase superfamily protein; SPTR: A4XPQ9 Putative uncharacterized protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1; thioesterase domain" /codon_start=1 /transl_table=11 /product="thioesterase" /protein_id="YP_003806766.1" /db_xref="GI:302342237" /db_xref="GeneID:9493251" /translation="MPNDLGPEKLRELLETTVPFVRRAGLKALELAPGRVKLLMPFAG NENHIGIMYAGALFTLAEVPGGALFLTTFDIEKYYPVVKEINIRFRRPATGDVTIEVA MAQDEIGRINAEVEAGGKSEFILEGQITDGQGQVAAIARGVYQIRKHGS" misc_feature complement(904597..904962) /locus_tag="Deba_0801" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature complement(order(904759..904770,904789..904791, 904879..904881)) /locus_tag="Deba_0801" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(904768..904770,904774..904788, 904861..904863,904870..904872,904876..904878)) /locus_tag="Deba_0801" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(904789..904791,904834..904839, 904846..904851,904873..904875)) /locus_tag="Deba_0801" /note="PHB binding site; other site" /db_xref="CDD:48038" gene 905200..907131 /locus_tag="Deba_0802" /db_xref="GeneID:9493252" CDS 905200..907131 /locus_tag="Deba_0802" /note="COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterProIPR000644:IPR000595:IPR014710:IPR018490:IPR 005105:IPR018821; KEGG: tye:THEYE_A0033 nucleotidyltransferase family; PFAM: protein of unknown function DUF294 nucleotidyltransferase ; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein; SPTR: B5YGV7 Putative nucleotidyltransferase family; PFAM: Putative nucleotidyltransferase substrate binding domain; CBS domain; Cyclic nucleotide-binding domain; Putative nucleotidyltransferase DUF294" /codon_start=1 /transl_table=11 /product="CBS domain and cyclic nucleotide-regulated nucleotidyltransferase" /protein_id="YP_003806767.1" /db_xref="GI:302342238" /db_xref="GeneID:9493252" /translation="MDDFPWRRVLDFVRGVAPFDALGPDELGRVARSMEIAYFPRGRR IIAAGGAPAQALHIIQSGAAEQSLPARDGRPPALIDLRGEGDVFGAASLLAGQSPLFD VVAREDMVCYLLPAEPFKALVADHAAFQRFFGSSLAHDLAAAASLGRATPVDGLDLGL GAALSRSRVGEVMSRQALCGPPQTSLRQAARLMTERQVGSIIVADAAGQPIGILTDSD FRGRVMLSARHFDQPIADFMTSPVRTIAPNAYAFDALLTMSRHGLHHLAVVEGGRLVG VVSDRDLQALTGASPVALAREIDKAESVDELVGLHGRVDRVIERLLRLGGSARDMLEL VTEFNDRLTHKLVQLCEADMEAQGLGPAPTPYCWLALGSEGRREQTLRTDQDNAIVFA NVPADSLGAVKGWFLGLAHRVTRALEACGFPLCNGDVMADNPRWCQTLDQWKDVFGGW VSQPKPLTLRMASIFFDFRAIYAESDYDEALREHLRQALEGNRLFLRFMAKNGLYNRA PLGFLRQLVVERGGEHKNKLNLKNSGLMPLVDGARVLALDQGVMATGTLDRLAAAAEA GVLRPALAADLAEAFGFITLMRIGRHLEARAAGQTPDNYIDPASLGSLQRKTLKESFR VISEFQALLEHRYQTWLLT" misc_feature 905230..907116 /locus_tag="Deba_0802" /note="Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]; Region: COG2905" /db_xref="CDD:32729" misc_feature 905251..905598 /locus_tag="Deba_0802" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature order(905464..905469,905494..905502) /locus_tag="Deba_0802" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature order(905560..905568,905578..905586) /locus_tag="Deba_0802" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature 905722..906048 /locus_tag="Deba_0802" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain...; Region: CBS_pair_CAP-ED_DUF294_PBI_assoc2; cd04800" /db_xref="CDD:73142" misc_feature 906136..906660 /locus_tag="Deba_0802" /note="Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401" /db_xref="CDD:143391" misc_feature order(906349..906351,906355..906357,906481..906483) /locus_tag="Deba_0802" /note="metal binding triad; other site" /db_xref="CDD:143391" misc_feature 906676..907110 /locus_tag="Deba_0802" /note="Putative nucleotidyltransferase substrate binding domain; Region: DUF294_C; pfam10335" /db_xref="CDD:150931" gene 907131..907853 /locus_tag="Deba_0803" /db_xref="GeneID:9493253" CDS 907131..907853 /locus_tag="Deba_0803" /EC_number="2.7.7.7" /note="COGs: COG2176 DNA polymerase III subunit alpha (gram-positive type); InterPro IPR006054:IPR006055:IPR012337:IPR013520; KEGG: cte:CT1039 DNA polymerase III, subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: Q8KDK8 DNA polymerase III, subunit epsilon; TIGRFAM: DNA polymerase III, subunit epsilon; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, subunit epsilon family" /codon_start=1 /transl_table=11 /product="DNA polymerase III, subunit epsilon" /protein_id="YP_003806768.1" /db_xref="GI:302342239" /db_xref="GeneID:9493253" /translation="MGLTTARLRNRYRRLRLGRRGLSPLARANLAALDGLDRRAPLDE CSFVVLDLETTGVDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQGEVPASSITIHG LTPQRLAAGRPLAQVFDDLAGFIGADIVVAHNAGFDLHFIDRHMRAHHGLALQNLALC TLRLCRALLLPSDPFGVGRHKGQCRLDAIAERFGLDTPQRHTAIGDALVTALIFQRML AMMEERGQARLGRLIALGQAPR" misc_feature 907272..907775 /locus_tag="Deba_0803" /note="DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127" /db_xref="CDD:176648" misc_feature order(907281..907292,907296..907298,907527..907532, 907536..907544,907731..907733,907746..907748) /locus_tag="Deba_0803" /note="active site" /db_xref="CDD:176648" misc_feature order(907281..907292,907296..907298,907527..907532, 907536..907541,907731..907733,907746..907748) /locus_tag="Deba_0803" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176648" misc_feature order(907281..907283,907287..907289,907542..907544, 907731..907733,907746..907748) /locus_tag="Deba_0803" /note="catalytic site [active]" /db_xref="CDD:176648" gene complement(907866..909170) /locus_tag="Deba_0804" /db_xref="GeneID:9493254" CDS complement(907866..909170) /locus_tag="Deba_0804" /note="KEGG: hmo:HM1_1627 flagellar hook-associated protein 2, SPTR: B0TE02 flagellar hook-associated protein 2" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806769.1" /db_xref="GI:302342240" /db_xref="GeneID:9493254" /translation="MIMAVTVKYQGVVKNAPVLHTQSGSYPFEPVTPPGGLELRPVGA GLATRATQGSIYELARAAEQERVLGELDFMLQNLSVNLTYPQTPDAQPNALGRLAVSS DPTAILASAAQTAQAPTTHEARVLPTATGGVVMGKTMNPIAPVSLAAGAYRFTMTIDG QARQIDMNVGEGQTNEEFIGRLAIAIASQDERIQAKAVYGFEDAYDPGARTRPMNRTV RLVVSGPEDQTGPSFYFGEDSAGVVEAFGLNLLSPPRTAVARLDGVAQAQTDNAISLD GGAVTGLASGDGAAVIEVTAGAPAVSQRLSAIIERFNEIIAYIDLHADVLRPSLKDRL TRPGEDLARLLPKIGLRATAQGKIVVSQGFAEAVKADYATARELLLGQDGWMTKLSGK VGQILAMDKSFWADPPDFSKGAAQRAWALIFDVSQSIISGYY" gene complement(909281..910891) /locus_tag="Deba_0805" /db_xref="GeneID:9493255" CDS complement(909281..910891) /locus_tag="Deba_0805" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dat:HRM2_38320 AcsA3; PFAM: AMP-dependent synthetase and ligase; SPTR: C0GH76 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806770.1" /db_xref="GI:302342241" /db_xref="GeneID:9493255" /translation="MSDRSVYFDVLSPVKFLPRSAAIYPDKTAVIHGQDRYTYAQFAA RVHRLGSALKKAGVGKGDKVAFLCPNTPPMLEAHHAVPMIGAALVSINTRLSPQEIGY IVNHSDAKALFVDTELAPQILPVLDDLRQLRLRVNIQDIDDASPLKGPSYEEFLATGS DEPLAVEVDDEYQIATINYTSGTTGKPKGVMYHHRGACLNALGEMLEAKLNTNSVYLW TLPMFHCNGWCFTWGVTAAGATHVCLRKVVPEEIFRLIEHEGVTNLCAAPTVLVSMAN YPGAANARMKAHLEIMTAGAPPAPAVIKSMENLGANVTQTYGLTEVFGPHSICAWQTK WDNLPLDERAAIKARQGVPYTVALHMDVVDQLSMAPVPHDGKTIGEIVMRGNNVMLGY YKDPEATAEAFRGGWFHSGDLAVVHPDGYVQIMDRSKDIIISGGENISTVEVESVLYG HPDVLEVAVIAVPDDKWGEAPKAYVTLKEGAKPDAQSLIDFCRQHLAKFKAPKHVEFG PLPKTATGKIQKFKLREEAWKGRDKKVQ" misc_feature complement(909311..910861) /locus_tag="Deba_0805" /note="acyl-CoA synthetase; Validated; Region: PRK08162" /db_xref="CDD:181261" misc_feature complement(909314..910786) /locus_tag="Deba_0805" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(911073..912131) /locus_tag="Deba_0806" /db_xref="GeneID:9493256" CDS complement(911073..912131) /locus_tag="Deba_0806" /note="COGs: COG1472 beta-glucosidase-related glycosidase; InterPro IPR001764:IPR017853; KEGG: ank:AnaeK_4399 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Q1NXP1 glycoside hydrolase, family 3-like; PFAM: glycosyl hydrolase family 3 N terminal domain" /codon_start=1 /transl_table=11 /product="glycoside hydrolase family 3 domain protein" /protein_id="YP_003806771.1" /db_xref="GI:302342242" /db_xref="GeneID:9493256" /translation="MSARYARAQIESAVAQSLVIGLEGLEASADELAMVAQGRVGGVI LFARNVESPEQVWALNESLRRAAVGLPPLFVMVDQEGGSVARLRAPFTDGPDMAALGA ADAAALAAHGRRMGRELAAAGFNFNLAPVVDVHAVQGGVMARRSLGADPLKVGELAAA FIQGQQEAGCLACAKHFPGLGRTTADSHRHRPLVELSRDELDAVELPPFRRAIAADVA GVMVCHAVFTAVDADRPASLSPAVIEGLLRGEMGYQGLTLSDDLEMGALAAHGLAPAQ AATQAYIAGCDLLLVCRRAEEALTAGREITDMIIDGRIQPAVAQAKLERVLRAKAGLR HLPPPLDQLRAALSHKGA" misc_feature complement(911139..912080) /locus_tag="Deba_0806" /note="Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; cl07971" /db_xref="CDD:186723" gene complement(912128..913081) /locus_tag="Deba_0807" /db_xref="GeneID:9493257" CDS complement(912128..913081) /locus_tag="Deba_0807" /note="KEGG: mar:MAE_45780 magnesium protoporphyrin IX chelatase subunit D; SPTR: A8YEX0 Similar to Q4BXZ0_CROWT Magnesium chelatase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806772.1" /db_xref="GI:302342243" /db_xref="GeneID:9493257" /translation="MKRKIAARLSLALLLAMTSTLVGCFDYELFLDLKADGSSRLRET LTTPNIMAEAPTPGMLDNIKRPIPTRQRLVKGDKIILVEKVKISRLDRLGARRVQYAV IRKEGSLLEIGDSLHRVVITLLPTEDSPATRGDFPDKPLDPPPPPEPPSDPNQAIANN LWRKSLDGHFVNIRLRLPGEITEARGVNIGSTRVDPTINQARHEVNWAFPVWALVADN TRETIVLTVDFDGRFAYSTQVLRVYGGKNMVVQSQIFRPGQPEPEEDFGRPKRNKKSD DGSDDVDEDVDEEGLEDASGEGEESNQPSQPASWPAPESRP" gene 913226..914167 /locus_tag="Deba_0808" /db_xref="GeneID:9493258" CDS 913226..914167 /locus_tag="Deba_0808" /note="COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/subunit epsilons (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR011004:IPR005835:IPR018357; KEGG: ank:AnaeK_3750 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: B4UE03 Nucleotidyl transferase; PFAM: Nucleotidyl transferase" /codon_start=1 /transl_table=11 /product="Nucleotidyl transferase" /protein_id="YP_003806773.1" /db_xref="GI:302342244" /db_xref="GeneID:9493258" /translation="MRAMVLAAGLGTRLLPLTRLRPKCLIPVCNRPLLGLWLERLAAL GVTRAVVNTHHLAHAVRAALPFLAPPGLEALESHEPTLLGTGGGLVAARAKLGDEPFL LANADVLAAGDPLPLLAALRQTGAAACLGLVDWPEVNSVAVGPGGRVRGFYGDIMLAP ERWLTYSGVAAISPELFEFLPASGPGGLVEALRAALRAGRLVLGLELGGYWSDLGAPE RYLAAHRDLLLGGAGFGDLAGLGPMVASPGAVIEPGARLEGFCAVAEGARVAAGALVS ASVLLPGARVAPGATVFGAVLGDGFVASGELRGGAHA" misc_feature 913229..913894 /locus_tag="Deba_0808" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature order(913241..913243,913247..913249,913379..913381, 913538..913540) /locus_tag="Deba_0808" /note="active site" /db_xref="CDD:132997" gene 914181..915215 /locus_tag="Deba_0809" /db_xref="GeneID:9493259" CDS 914181..915215 /locus_tag="Deba_0809" /note="COGs: COG3178 phosphotransferase related to Ser/Thr protein kinase; InterPro IPR011009:IPR002575; KEGG: dps:DP2940 hypothetical protein; PFAM: aminoglycoside phosphotransferase; SPTR: C8QX22 Aminoglycoside phosphotransferase; PFAM: phosphotransferase enzyme family" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_003806774.1" /db_xref="GI:302342245" /db_xref="GeneID:9493259" /translation="MIAAWAARHWPGGPVARPEATAMAPDGSTRFFVRLRAAGRQLVA MHGPDNPAEARAWLHLAGVLAAGGLPAPKVWAAEERAGLFLMDDLGQADLHGAALALA GDADALAKLYEPVLAMLARLQAVGAAGLDVSYCFDGAELSPEFLLRREAGYFMEWFVE AACGLRERPAGLAEELALVAERAGRAEPRGLVHRDFQSRNIVLGPCGPGLVDFQGARL GPAQYDLASLLHDPYVDLPWPLRRRLLGRYLDLRRDVGPFDAEAFVEGWPFVCLSRLM QALGAYGFLCGRRKKPFFAAHGRPALNSLRRLLAEPPLAMLPALGQLARRLPDDPGPL LAALAGEDSR" misc_feature <914511..915071 /locus_tag="Deba_0809" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" gene 915212..916651 /locus_tag="Deba_0810" /db_xref="GeneID:9493260" CDS 915212..916651 /locus_tag="Deba_0810" /note="COGs: COG1160 GTPase; InterProIPR005225:IPR016484:IPR015946:IPR006073:IPR 002917; KEGG: sfu:Sfum_1809 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: A0LJ92 GTP-binding protein engA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain" /codon_start=1 /transl_table=11 /product="ribosome-associated GTPase EngA" /protein_id="YP_003806775.1" /db_xref="GI:302342246" /db_xref="GeneID:9493260" /translation="MSAIMAIVGRPNVGKSTLFNRLTRTRQALVHDLPGVTRDRLYGR AIIDDRQVTVIDTGGFDPPADQPFAAEVHAQIAMAMEEADLILFVCDGRAGLNPADLE IATRLRRSQKPVIHAVNKIDGPRQEDEASEFFALGVEKLHFISAAHGYGMSDLADDIL AHLPPDDELTERLETPGGAVFLSPSRLAERDEPPEDEDIDPKRLAVDEIRVALIGRPN VGKSSLLNALFGGPRVVVSDVPGTTRDAVDTPIQVGDKKYVIIDTAGIRRRGKVAPGI EKAGVFRSLRAIDRAHVVVAMMEAGEGVTDQDLHLIGAAMEQNRALIVVMNKWDLLAG DERRRKQLDARLEEALRFAPWAPVLRLSVLKGRGVDKILPLVDQIFAQYNSRLGTGRL NQVLEQAQIKHTPPSVGSRRLKIYYAAQVAVRPPTVALVVNDPKAVHFSYRRFLTNEF RKAMGLEQSPLKLILRGRSGRRASAPKKK" misc_feature 915221..916624 /locus_tag="Deba_0810" /note="GTP-binding protein Der; Reviewed; Region: PRK00093" /db_xref="CDD:178858" misc_feature 915227..915700 /locus_tag="Deba_0810" /note="EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that...; Region: EngA1; cd01894" /db_xref="CDD:133294" misc_feature 915236..915259 /locus_tag="Deba_0810" /note="G1 box; other site" /db_xref="CDD:133294" misc_feature order(915245..915247,915251..915262,915566..915571, 915575..915577,915644..915652) /locus_tag="Deba_0810" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133294" misc_feature order(915290..915310,915320..915331) /locus_tag="Deba_0810" /note="Switch I region; other site" /db_xref="CDD:133294" misc_feature 915320..915322 /locus_tag="Deba_0810" /note="G2 box; other site" /db_xref="CDD:133294" misc_feature order(915374..915391,915455..915460) /locus_tag="Deba_0810" /note="Switch II region; other site" /db_xref="CDD:133294" misc_feature 915377..915388 /locus_tag="Deba_0810" /note="G3 box; other site" /db_xref="CDD:133294" misc_feature 915566..915577 /locus_tag="Deba_0810" /note="G4 box; other site" /db_xref="CDD:133294" misc_feature 915644..915652 /locus_tag="Deba_0810" /note="G5 box; other site" /db_xref="CDD:133294" misc_feature 915830..916351 /locus_tag="Deba_0810" /note="EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that...; Region: EngA2; cd01895" /db_xref="CDD:133295" misc_feature 915854..915877 /locus_tag="Deba_0810" /note="G1 box; other site" /db_xref="CDD:133295" misc_feature order(915863..915865,915869..915880,916190..916195, 916199..916201,916295..916303) /locus_tag="Deba_0810" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133295" misc_feature order(915899..915901,915908..915949) /locus_tag="Deba_0810" /note="Switch I region; other site" /db_xref="CDD:133295" misc_feature 915938..915940 /locus_tag="Deba_0810" /note="G2 box; other site" /db_xref="CDD:133295" misc_feature 915995..916006 /locus_tag="Deba_0810" /note="G3 box; other site" /db_xref="CDD:133295" misc_feature order(916004..916009,916079..916084) /locus_tag="Deba_0810" /note="Switch II region; other site" /db_xref="CDD:133295" misc_feature 916190..916201 /locus_tag="Deba_0810" /note="G4 box; other site" /db_xref="CDD:133295" misc_feature 916295..916303 /locus_tag="Deba_0810" /note="G5 box; other site" /db_xref="CDD:133295" gene 916773..917354 /locus_tag="Deba_0811" /db_xref="GeneID:9493261" CDS 916773..917354 /locus_tag="Deba_0811" /note="COGs: COG0279 phosphoheptose isomerase; InterPro IPR001347; KEGG: dde:Dde_2619 phosphoheptose isomerase; PFAM: sugar isomerase (SIS); SPTR: Q30Y31 phosphoheptose isomerase; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase" /codon_start=1 /transl_table=11 /product="sugar isomerase (SIS)" /protein_id="YP_003806776.1" /db_xref="GI:302342247" /db_xref="GeneID:9493261" /translation="MMQAVAAAGVQKTIAAMEQLLASGLGAVTTAAAAIAKAFSDDKK MLCFGNGGSAADAQHLAAEMVNRFMLERPSLPCLALTTDASVLTSIANDYAFGEIFSK QIKALGAAGDVALGISTSGNSPNVLEGLRVAQQRGLLTIGLTGRGGGAMAALCDILVA APTDETPRIQEVHAVVIHLICELVDLTLFGRAK" misc_feature 916902..917327 /locus_tag="Deba_0811" /note="Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006" /db_xref="CDD:88403" misc_feature order(916920..916928,917124..917132,917139..917141, 917268..917270,917280..917282) /locus_tag="Deba_0811" /note="active site" /db_xref="CDD:88403" misc_feature order(916926..916928,916944..916949,917280..917285, 917295..917297,917304..917306,917316..917318) /locus_tag="Deba_0811" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88403" gene 917351..918292 /locus_tag="Deba_0812" /db_xref="GeneID:9493262" CDS 917351..918292 /locus_tag="Deba_0812" /note="KEGG: dal:Dalk_4350 hypothetical protein; SPTR: B8FN60 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806777.1" /db_xref="GI:302342248" /db_xref="GeneID:9493262" /translation="MKPTPADLRLLKLTDLEVRKSKVDGGNLGRPWRAGGTFGDFVES LPHVLAAGDLRRAAEAVVRARRAGRPVILAMGAHVIKVGLSPLLIDAMERGLITGLAF NGACVIHDTEMALAGRTSEDVAEALADGSFGTARQTGEFINNAVSAAPELGIGRAVGQ ALLQRAPANAAYSLLAAAARLDLPVTVHIAVGADIIHMHPSFDPAAAGLASHNDFRLL IGQVAKLKGGVYLNVGSAVVLPEVFLKALSAARNLGHDVRDFTTVNMDMIQHYRPNTN VVRRPVLTGGLGLSITGHHEINLPLLLAMIVEGIERA" gene 918402..918620 /locus_tag="Deba_0813" /db_xref="GeneID:9493263" CDS 918402..918620 /locus_tag="Deba_0813" /note="InterPro IPR013429:IPR006058; KEGG: sfu:Sfum_3203 hypothetical protein; PFAM: regulatory protein FmdB; SPTR: Q30Y30 Putative uncharacterized protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM: regulatory protein, FmdB family" /codon_start=1 /transl_table=11 /product="regulatory protein, FmdB family" /protein_id="YP_003806778.1" /db_xref="GI:302342249" /db_xref="GeneID:9493263" /translation="MPIYEYKCNKCAKEFEVLVLGSRDDVRCPQCDAADVSRLMSGFA HKNEGGTLVSSSGGGCSSCSGGSCSTCH" misc_feature 918402..918524 /locus_tag="Deba_0813" /note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS; cl00993" /db_xref="CDD:197419" gene 918643..919575 /locus_tag="Deba_0814" /db_xref="GeneID:9493264" CDS 918643..919575 /locus_tag="Deba_0814" /EC_number="2.5.1.61" /note="COGs: COG0181 porphobilinogen deaminase; InterPro IPR000860; KEGG: dvm:DvMF_0584 porphobilinogen deaminase; PFAM: porphobilinogen deaminase; SPTR: B8DKW2 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase, C-terminal domain; porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase" /codon_start=1 /transl_table=11 /product="porphobilinogen deaminase" /protein_id="YP_003806779.1" /db_xref="GI:302342250" /db_xref="GeneID:9493264" /translation="MPKLIIATRGSELALAQARWAARQLSALSPGLEVELQLFKTKGD KILDAPLAKVGGKGLFVKEIEDALLDGRARVAVHSMKDMPAELPPGLCIAAVSRREDP RDVLISRDGLGLDELPATPRLGTSSLRRQAQLLARRPDAMVVSVRGNVQTRLRKLEEL GLDAIVLAAAGLDRLGLSDPRRVDLAPELMLPAVGQGALAIEARADDAFCLELCARLA HQPTAVAVEAERAFLGRLEGGCQVPIAGHAVVDGDEIVFEGLVASLDGKRLIRRRAVG RADEAGPLGLAVAEEILADGGRQILAEVYGRGPQ" misc_feature 918643..919524 /locus_tag="Deba_0814" /note="porphobilinogen deaminase; Reviewed; Region: hemC; PRK00072" /db_xref="CDD:178840" misc_feature 918652..919524 /locus_tag="Deba_0814" /note="Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of...; Region: HMBS; cl03189" /db_xref="CDD:155337" misc_feature order(918673..918675,918688..918690,918880..918897, 918901..918903,918928..918933,918937..918954, 919027..919029,919033..919038,919048..919050, 919087..919089,919150..919152,919159..919164, 919210..919233,919285..919287,919306..919308, 919315..919317,919327..919332,919339..919341, 919360..919362,919372..919374,919378..919380, 919414..919416,919429..919431,919438..919440, 919447..919449,919453..919455) /locus_tag="Deba_0814" /note="domain interfaces; other site" /db_xref="CDD:29604" misc_feature order(918679..918681,918691..918693,918877..918879, 918883..918888,919015..919023,919027..919032, 919078..919080,919099..919101,919138..919146, 919153..919155,919162..919164,919219..919221, 919228..919233,919360..919362) /locus_tag="Deba_0814" /note="active site" /db_xref="CDD:29604" gene 919572..921101 /locus_tag="Deba_0815" /db_xref="GeneID:9493265" CDS 919572..921101 /locus_tag="Deba_0815" /note="COGs: COG0007 uroporphyrinogen-III methylase; InterProIPR006366:IPR014777:IPR014776:IPR000878:IPR 003754:IPR003043; KEGG: sfu:Sfum_3201 uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; SPTR: A0LN72 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase" /codon_start=1 /transl_table=11 /product="uroporphyrin-III C-methyltransferase" /protein_id="YP_003806780.1" /db_xref="GI:302342251" /db_xref="GeneID:9493265" /translation="MSGKVYLIGAGPGDPELITMKAARCLAQADVVVYDFLANPELLG LAPAEAAHVYVGKKGGDHTMSQEGINALLCDLAAQGKTVARLKGGDPYVFGRGGEEAS ALWERGLAFEVVPGVSSAVAAPCYAGIPVTDRRHATEVAFVTGHEDPTKASSTINWQA LAAMGSLVFLMGVKNLPEICAQLIAHGKPAETPAACVRWGATARQQTIVGALADLPQK AAAAGLKPPAVTIVGGAVALREQLNWYERMPLFGRRVLVTRARAQASKLSAGLRALGA EVVECPTIEIRPMPDDGQLRWAAAHAADYDWVLFTSANAVEPFLQALLARGRDVRALH RTKIGAIGPATAQALARRGLKYDLMAKSFVAEGLLEALADHDLAGKKVLLPRATRARD VLPEELRKRGALVDIVAAYETFAPAGAKERLEAIMADGLGVITFTASSTVDNLMDMLD EPTKAKLIAESASGALIVASIGPITSQSARRHGMTVHVEPAEYTIPALIEALAAHCQQ S" misc_feature 919572..920312 /locus_tag="Deba_0815" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" misc_feature 920334..921077 /locus_tag="Deba_0815" /note="Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations...; Region: HemD; cd06578" /db_xref="CDD:119440" misc_feature order(920346..920348,920505..920513,920601..920603, 920730..920732,920802..920804,920808..920810, 920880..920894) /locus_tag="Deba_0815" /note="active site" /db_xref="CDD:119440" misc_feature 920364..921071 /locus_tag="Deba_0815" /note="Uroporphyrinogen-III synthase HemD; Region: HEM4; pfam02602" /db_xref="CDD:145641" gene 921098..923323 /locus_tag="Deba_0816" /db_xref="GeneID:9493266" CDS 921098..923323 /locus_tag="Deba_0816" /note="COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR014017:IPR000212; KEGG: dma:DMR_07030 ATP-dependent DNA helicase; PFAM: UvrD/REP helicase; SPTR: Q1NUA0 UvrD/REP helicase; PFAM: UvrD/REP helicase" /codon_start=1 /transl_table=11 /product="UvrD/REP helicase" /protein_id="YP_003806781.1" /db_xref="GI:302342252" /db_xref="GeneID:9493266" /translation="MSGAGESILGGLNPAQRQAVELLGRPVLVIAGAGSGKTRTLVHR VAHVVELGVDPREILLLTFTRRAAAEMLARARQLNPACAAVGGGTFHSLCNRLLRRYA ARAGLMPNFTIIDPADAEHLVRGCIDELGLKGGKDERFPKPRTVFGLISASRNLELSL AELIQTREPHLWPISKEIERIALAYAQAKQRQNQVDYDDLLFMAEALLRDNPDIQDDQ RRRWRHVLVDEYQDTNAVQARLLELICGPGQELMVVGDDAQSIYRFRGARIDNIFEFP ERFAGAAVVKLERNYRSTQPILDLTNAIIEGAGQRFDKRLFTELLEGPKPRLERPRDE RGQSRLVRERIQKLLADGARPEDIAVLFRAGRDSFDLERELTAEHLAYVKYGGLKFLE ASHIKDVLAHLRVIANPLDFVSWQRALMLLPGVGPTTAQQIVAHLALAAGPADFGPRL RACPQGKRSAPVRQLAELMDELSDPAAPPLDKVEAALEYYEPFCREQYEDYPRRLRDL EELPGLARAFGSLEDMLAELVLDPPAAHAEEMGGGRITLSTVHSAKGMEWPHVFVIWA TDGRLPSSASLDDPDGLEEERRLLYVACTRAAKGLLLVAPRESFNRFDGARDQELSRF LDDLPAAVMESSGGAVFGEAFTRLAAAAAPDETPVARPVAAPRAVKEPAGPKVGSVAG KMALLQYDRPFPVGEMVSHAKFGRGKVIGYRGDDKIMVHFTGYGLKTLVLKFAGLQPA Q" misc_feature 921119..923311 /locus_tag="Deba_0816" /note="ATP-dependent DNA helicase PcrA; Region: pcrA; TIGR01073" /db_xref="CDD:162191" misc_feature 921131..922402 /locus_tag="Deba_0816" /note="UvrD/REP helicase; Region: UvrD-helicase; cl14126" /db_xref="CDD:196784" misc_feature <922739..922912 /locus_tag="Deba_0816" /note="UvrD/REP helicase; Region: UvrD-helicase; cl14126" /db_xref="CDD:196784" gene 923337..924635 /locus_tag="Deba_0817" /db_xref="GeneID:9493267" CDS 923337..924635 /locus_tag="Deba_0817" /EC_number="6.3.2.17" /note="COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR001645:IPR013221:IPR004101; KEGG: sfu:Sfum_1671 FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: A0LIV6 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase" /codon_start=1 /transl_table=11 /product="FolC bifunctional protein" /protein_id="YP_003806782.1" /db_xref="GI:302342253" /db_xref="GeneID:9493267" /translation="METYEQAVQRLYDLQKFGIKLGLNSTERLLARLGDPHLKLPTVH LAGTNGKGSVGAMLEATLRQAGLKTGFYTSPHLVRFTERFKIDGQEIAENEVAALADD VWWVVDPSQPPTFFEIVTAMAFLHFARRGVDVLILETGLGGRLDATNVCRPLASLITN IGLEHQDFLGKTLASIAFEKAGVIKPATPLIHGVSQKPARAVIEARAREMAAPEIRLG REITCRRRADESFALRGRLWRFDDLRCNLRGRHQPLNAALALGATEVLAEKGLAVGPE HFAAGLRRVDWPGRLERWPTDEGEPALWLDGAHNIPSAKALLASIDLLRRPGGPLVMV VGVMADKAVDKILAIVLPAADRVVFSRPGYSRAATPQALAAAAPKDCPPSEINDDLAS AIQRARELAGPEGVVLITGSLFTVGEARAILGGMPTSDLP" misc_feature 923337..924617 /locus_tag="Deba_0817" /note="Folylpolyglutamate synthase [Coenzyme metabolism]; Region: FolC; COG0285" /db_xref="CDD:30633" misc_feature 923475..924122 /locus_tag="Deba_0817" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" gene 924700..927024 /locus_tag="Deba_0818" /db_xref="GeneID:9493268" CDS 924700..927024 /locus_tag="Deba_0818" /note="COGs: COG1452 Organic solvent tolerance protein OstA; InterPro IPR005653:IPR007543; KEGG: dal:Dalk_3824 organic solvent tolerance protein; PFAM: OstA family protein; Organic solvent tolerance protein; SPTR: B8FC92 Organic solvent tolerance protein; PFAM: Organic solvent tolerance protein; OstA-like protein" /codon_start=1 /transl_table=11 /product="OstA family protein" /protein_id="YP_003806783.1" /db_xref="GI:302342254" /db_xref="GeneID:9493268" /translation="MRKSWRLSCANYLVLMIVAALLVFSAGPALAQSNELVRLETSTP VDVRADKLTYDDKTNSYLAEGEVEITQGANRLVADKVRLFSQSMIAEAEGNVSMVSPS QVVSAASLVVNLNTSTGKLYDARIFLPATHYYLRGEEIVKTGEDTYTMAQGGFTTCDG DSPNWEVTGSEVDVTIEGYGTAKNTAFRIKDMPVLWSPYMVFPVKTKRQSGLLPPMFG QGQRDGFLMSLPYYHVLGEDQDATITLNVMTSRGVGIGAEYRYALDEFSKGMIMADLL PSDNNSQSLYEEGKLAEPYDKRWWVRGMADQKLFGGAMEMRMDLDLVSDRDYMREFTF GYTGFNTSSYRLAEMFNRTLEPNSSWLRTSKVNLLRYWSSSTLNMTAYYFDQINTDNK STLQQLPAISYDAVRQAIDDRGMFYFQMTSDFTYYYRETGSTGAILNFNPAVSAPLNF RDYLEVEPVFTWNQRLYSATLGESEDQDKDKYGASYGWNFQLKNSTYLYRVYDFGEAE TPFKVKHAVRPKVDYLYRPNIYDGEAPELAQMYQNRLNYFRYGFNNAFTYKYMQENEE TGEIEPVYREFLKVNVFQVYSLDERSYNGSSGMTYTGADNSAQLGYDTWDGSYSLPYR HDGENFGNFGARVEFDPWDGLYFESDVEYDPYESRIYTFNSSMTFSDYRGDMLSFDYR YTHDILKQLRSMVRVALNDKWSVGMQNRHDFDNEMDFDTIYQLEYNDQCWGVRVFYRD DSTERGFFLVFSIGGFGEIFGTGFGGEDTKERTY" misc_feature 924715..926934 /locus_tag="Deba_0818" /note="Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]; Region: Imp; COG1452" /db_xref="CDD:31641" misc_feature 924829..>924984 /locus_tag="Deba_0818" /note="OstA-like protein; Region: OstA; cl00844" /db_xref="CDD:193952" misc_feature 925591..926808 /locus_tag="Deba_0818" /note="Organic solvent tolerance protein; Region: OstA_C; pfam04453" /db_xref="CDD:190995" gene 927139..927567 /locus_tag="Deba_0819" /db_xref="GeneID:9493269" CDS 927139..927567 /locus_tag="Deba_0819" /note="COGs: COG0102 ribosomal protein L13; InterPro IPR005823:IPR005822; KEGG: hor:Hore_02460 ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: B8D0U3 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type" /codon_start=1 /transl_table=11 /product="ribosomal protein L13" /protein_id="YP_003806784.1" /db_xref="GI:302342255" /db_xref="GeneID:9493269" /translation="MKTFVAKPNDATREWFVIDATDLVLGRMATQIAMRLRGKHKPTF TPHVDTGDFIIVVNADKVKLTGRKWDQKKYYRHSGYPGGITEISADKARGSHPERLIF SAVRGMLPKNTLGRQMLKKLKVYAGPEHPHQAQTPQSLSL" misc_feature 927181..927522 /locus_tag="Deba_0819" /note="Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392" /db_xref="CDD:88313" misc_feature order(927208..927210,927214..927219,927226..927228, 927235..927237,927247..927249,927331..927333, 927337..927339,927421..927426,927442..927450, 927454..927462,927466..927474,927478..927480, 927484..927486,927496..927498,927505..927510) /locus_tag="Deba_0819" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88313" misc_feature 927424..927426 /locus_tag="Deba_0819" /note="L3 interface [polypeptide binding]; other site" /db_xref="CDD:88313" gene 927583..927978 /locus_tag="Deba_0820" /db_xref="GeneID:9493270" CDS 927583..927978 /locus_tag="Deba_0820" /note="COGs: COG0103 ribosomal protein S9; InterProIPR014721:IPR020568:IPR000754:IPR017441:IPR 020574; KEGG: pca:Pcar_1899 30S ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: Q3A3B7 30S ribosomal protein S9; PFAM: ribosomal protein S9/S16" /codon_start=1 /transl_table=11 /product="ribosomal protein S9" /protein_id="YP_003806785.1" /db_xref="GI:302342256" /db_xref="GeneID:9493270" /translation="MADNRYYATGKRKTSVARCWLVPGGSGKIVVNKNDVDKYFCRET DIMLLRQPLVLTETGAQFDVMATVVGGGTSGQAGAVRHGIARALLEFNPELRTALKRA GFLTRDPRKKERKKYGQKGARASFQFSKR" misc_feature 927583..927975 /locus_tag="Deba_0820" /note="Ribosomal protein S9/S16; Region: Ribosomal_S9; cl00334" /db_xref="CDD:193774" gene 928051..929088 /locus_tag="Deba_0821" /db_xref="GeneID:9493271" CDS 928051..929088 /locus_tag="Deba_0821" /EC_number="1.2.1.38" /note="COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; InterPro IPR000706:IPR016040:IPR000534:IPR012280; KEGG: gsu:GSU2874 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: C6MUG3 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form" /codon_start=1 /transl_table=11 /product="N-acetyl-gamma-glutamyl-phosphate reductase" /protein_id="YP_003806786.1" /db_xref="GI:302342257" /db_xref="GeneID:9493271" /translation="MHGVAIVGGSGYTGVELMRLIDAHPDLRLMAVSSRQYLGRPVAD VFGALRGRVELSFSAPDAPELLDGVELVFLAVPHKAAMAAAPGLLAAGRKVVDLSADF RLRDAAVYEKWYGPHTCQDLLAKAVYGLPEFYRHQVRRAQLTANPGCYVTSVLVPLVP LLRAGLVDSQSLIADSASGVSGAGRGAKMNLIHGEVHEDFKAYAVAGHRHTPEMEQEL SLAAGREVRLTFTPHLLPMDRGILSTIYARPVAGAGEEDARRCWQEAFADEPFVRVLP AGVLPQTKHVRGGNMVDIAVASDPRSGLLKIFSALDNLTKGASGQAVQNANLMLGLNE TTGLLGLATTP" misc_feature 928051..929031 /locus_tag="Deba_0821" /note="N-acetyl-gamma-glutamyl-phosphate reductase; Validated; Region: argC; PRK00436" /db_xref="CDD:179024" misc_feature 928060..928473 /locus_tag="Deba_0821" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature <928672..928998 /locus_tag="Deba_0821" /note="Semialdehyde dehydrogenase, dimerisation domain; Region: Semialdhyde_dhC; pfam02774" /db_xref="CDD:145758" gene 929092..929931 /locus_tag="Deba_0822" /db_xref="GeneID:9493272" CDS 929092..929931 /locus_tag="Deba_0822" /EC_number="5.4.99.12" /note="COGs: COG0101 Pseudouridylate synthase; InterProIPR001406:IPR020094:IPR020095:IPR020103:IPR 020097; KEGG: dol:Dole_0466 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; PRIAM: tRNA-pseudouridine synthase I; SPTR: A8ZTL2 Pseudouridylate synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase A" /protein_id="YP_003806787.1" /db_xref="GI:302342258" /db_xref="GeneID:9493272" /translation="MGAPSLWNRLAGDLPPLHAPFLPPEQGPPSPGRARAMALALAYN GAGFAGWQIQARGRTIQGQVERELSRLCGHAVRLWAAGRTDAGVHAFGQVASFQTDSR LEEGRMAQALAAMLPPDIWLRRLGRAPEGFHARFDAAGKTYEYYLWPKARPGVFLDGL CWPLACDLDMEAMARGAAFLLGEVDLAAFAAHSSEVEGPTVRRISEATVTPAEGGMIL VRLSGSGFLRHVVRNVVGTLTQIGQHRLEPEAVGRMLAAGRRIYPGPKAPPGGLYLGQ IYY" misc_feature 929203..929928 /locus_tag="Deba_0822" /note="tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021" /db_xref="CDD:178798" misc_feature 929206..929928 /locus_tag="Deba_0822" /note="PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1)...; Region: PseudoU_synth_EcTruA; cd02570" /db_xref="CDD:30020" misc_feature order(929215..929217,929428..929430,929437..929460) /locus_tag="Deba_0822" /note="dimerization interface 3.5A [polypeptide binding]; other site" /db_xref="CDD:30020" misc_feature order(929335..929346,929785..929787) /locus_tag="Deba_0822" /note="active site" /db_xref="CDD:30020" gene complement(929925..930110) /locus_tag="Deba_0823" /db_xref="GeneID:9493273" CDS complement(929925..930110) /locus_tag="Deba_0823" /note="KEGG: dal:Dalk_3199 hypothetical protein; SPTR: B8FGI0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806788.1" /db_xref="GI:302342259" /db_xref="GeneID:9493273" /translation="MTDDRQTTDKLSNRQEAYLKASKEIAVKFIETGRLTMASFGETF AQIYAGVKKAVEDAEGQ" gene 930328..932175 /locus_tag="Deba_0824" /db_xref="GeneID:9493274" CDS 930328..932175 /locus_tag="Deba_0824" /note="COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); InterProIPR014763:IPR003594:IPR020568:IPR013507:IPR 014790:IPR014762; KEGG: pca:Pcar_1304 DNA mismatch repair protein; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; SPTR: Q3A504 DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL C terminal dimerisation domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein MutL" /protein_id="YP_003806789.1" /db_xref="GI:302342260" /db_xref="GeneID:9493274" /translation="MVEQSQIRPVRLLPDEVANQIAAGEVVERPASVLKELVENALDA GARRVQIDVEAAGRGLIRVADDGHGMSADDLLLAVERHATSKLGQADDLIGVRTLGFR GEALPSIASVSRLRITTRQAADEVGALLVIEGGVIRQSGQIGCRVGSTVEARDLFFNI PARRKFLRGQITEAGHLSAALTRLALGWPGVAFRYAVGGKALHDLPATDDLTGRVAGL LGREAAAHMVGLDQRVGPIRLWGLAATPAHSRSAADQVFVFVNGRFVRDKILLHAVGQ AYHGLLPAERRPVAVLHLELDPELVDVNVHPAKIEVRFRQQREVHDALVLALRRGLAQ AAPARGVAPAFGGDASAPAPLAVEKAAWTPASQEAPPPASTPAWSPAPRVPPAETPPR RPWLDDPPAPQPWAGPAPRLEPLFGPAGELSLIGQLHGLYILCSAPDGLVIIDQHAAH ERLTFERLKGQLARGAVASQGLLAPVVLELSPQEAAWAALQAPIWARLGLEIAPFGGN AWAVRSLPALAAGADPGRLARDMLSTMSASGMPVDTPEFLEAALISLACHGSIRQGQQ LSRPEMDELVRACAQLPPPVTCPHGRPVFLSLGRRELARCFKRGSEPRS" misc_feature 930352..931266 /locus_tag="Deba_0824" /note="DNA mismatch repair protein MutL; Region: mutl; TIGR00585" /db_xref="CDD:161941" misc_feature 930400..>930630 /locus_tag="Deba_0824" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" misc_feature 930967..931317 /locus_tag="Deba_0824" /note="MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second...; Region: MutL_Trans_MutL; cd03482" /db_xref="CDD:48470" misc_feature 931252..931254 /locus_tag="Deba_0824" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48470" misc_feature 931600..932028 /locus_tag="Deba_0824" /note="MutL C terminal dimerisation domain; Region: MutL_C; cl07336" /db_xref="CDD:195534" gene 932172..933095 /locus_tag="Deba_0825" /db_xref="GeneID:9493275" CDS 932172..933095 /locus_tag="Deba_0825" /EC_number="2.5.1.75" /note="COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022:IPR002627; KEGG: ppd:Ppro_2963 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: A1AT90 tRNA delta(2)-isopentenylpyrophosphate transferase 1; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)" /codon_start=1 /transl_table=11 /product="tRNA delta(2)-isopentenylpyrophosphate transferase" /protein_id="YP_003806790.1" /db_xref="GI:302342261" /db_xref="GeneID:9493275" /translation="MSGRPPLLVVVGPTAVGKTGLAIALAQALDAEIVSADSVQVYRG LDVGSAKPTAREQAQARHHLLDVADPAEPFSAARYVELADQAIADIASRGKRALVVGG TGLYVRALLHGLAPAPPAAPELREELRAQWQELGPLAMHRRLAELDAQSAARLHPNDR QRVLRALEVCLGSGRPMSAWQASHRFGQRRYEHLTLGLDRQRQQLYQRIEERGRQMWA EGLLEEARAALAAGASPQAHGLDSLGYRQAVALILGRLTPEQAVAETIKQTKAYAKRQ LTWFRGLEGINWLSADDLVGALALARRFFGL" misc_feature 932181..933050 /locus_tag="Deba_0825" /note="IPP transferase; Region: IPPT; cl00403" /db_xref="CDD:197410" gene 933092..934303 /locus_tag="Deba_0826" /db_xref="GeneID:9493276" CDS 933092..934303 /locus_tag="Deba_0826" /note="KEGG: dol:Dole_1197 hypothetical protein; SPTR: A8ZXP5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806791.1" /db_xref="GI:302342262" /db_xref="GeneID:9493276" /translation="MSMGLVGLAGAPAAKGRETEPMKLTPWILLIILLVATPAAWAAE GPVVAMGRAAVAGNELKARDLAVEDALRQAVGQSAAKLLDPATLRAGLQVLDQKVLAK AKQYVGSFTLEASSISDGQMLVLVSANVDARALEQALALAGIRVPTGNLGRVLVLVAE ENAPGRPPVFWWSGYGQDDCAPRVVAKTLKAMGLELADCAPLRQGLPPELKALEITDE QALQLARLAGADIVLRGAARTYPLVSRPGQAETPLLDVQAIEAASGRVLAKQSAPGPK FSQTPGVEGAEQNDAALAQAVRDLVAQVVVARPMSAQDQGVLEIELSGVGSLGQLMRF EQVVSSLTSMVDSLRRQSLGGGKAVYRVEARVSASRLADEILVQNYGGFLVNVLEVAP GRLRLALLANH" gene 934389..934463 /locus_tag="Deba_R0017" /db_xref="GeneID:9493277" tRNA 934389..934463 /locus_tag="Deba_R0017" /product="tRNA-Val" /db_xref="GeneID:9493277" gene 934686..936569 /locus_tag="Deba_0827" /db_xref="GeneID:9493278" CDS 934686..936569 /locus_tag="Deba_0827" /note="COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR002320:IPR006195:IPR004154:IPR018163:IPR 018158:IPR012947:IPR002314; KEGG: dde:Dde_2639 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; Anticodon-binding domain protein; SPTR: Q30Y11 Threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="threonyl-tRNA synthetase" /protein_id="YP_003806792.1" /db_xref="GI:302342263" /db_xref="GeneID:9493278" /translation="MAEQTITVAELIARADPKAARQALAAEVDGRLVDLSAEVSADAQ ARPILPGEAAALDLLRHSTAHIMAEAVRALFPGVKVGIGPAIENGFYYDFAYERAFAM DDLPAIEDKMRQIIKANTPFVRCEAPREEIRRLFADQGEQFKVELIDDLHDQVVSTYG QGSFVDLCRGPHIPSTGRVGAFKLLSVAGAYWRGDEKRPMLSRIYGTAFFDKNELKQY LHMLEEAKKRDHRKLGKELDLFSFHEEIGPGMVVWHNRGMMLRMVLEDFERREHLRRG YQIVQGPQLLKRELWERSGHYDNYRENMYFTEVDGTAYGVKPMNCLAHMLIYKSKMHS YRDLPIRMFELGTVHRHEKSGVLGGLTRVRAFTQDDAHILCRPDQLEGEIMGVMDFVG EVMAIFGFDYGMELSTRPDKSIGSDEDWERATNALRKALEASGRPYEINEGDGAFYGP KIDFKLKDALGRQWQCATIQCDFTLPERFDLTYIAPDDSRQRPVMIHRVILGSLERFI GVLIEHYAGRFPFWLAPEQARVLTVTERADDWAREVFAALKNAGYRVEMDLRNEKLGA KVREAQLLKVPYMLVIGDREVDERQVAPRLRSGKNLPPLDLAGLLALFAEQARPGAAP PEE" misc_feature 934692..936488 /locus_tag="Deba_0827" /note="threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK00413" /db_xref="CDD:179011" misc_feature <934692..934829 /locus_tag="Deba_0827" /note="GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but...; Region: TGS; cl03735" /db_xref="CDD:194685" misc_feature 935151..935300 /locus_tag="Deba_0827" /note="Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; cl08469" /db_xref="CDD:158351" misc_feature 935370..936260 /locus_tag="Deba_0827" /note="Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771" /db_xref="CDD:29816" misc_feature order(935379..935381,935418..935420,935571..935573, 935583..935585,935592..935597,935637..935639, 935733..935735,935739..935741,935745..935753, 935766..935774,935781..935783,935787..935789, 936069..936071,936078..936083,936093..936095, 936189..936194,936201..936203) /locus_tag="Deba_0827" /note="active site" /db_xref="CDD:29816" misc_feature order(935391..935393,935409..935411,935415..935423, 935427..935429,935433..935435,935439..935444, 935448..935450,935457..935459,935502..935507, 935517..935522,935526..935528,935532..935540, 935544..935546,935598..935606,935610..935621, 935625..935627,935661..935666,935673..935681, 935685..935693,935730..935732,935736..935738, 935745..935747,935775..935780,935859..935861, 935982..935990,936135..936137,936141..936143) /locus_tag="Deba_0827" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29816" misc_feature 935517..935540 /locus_tag="Deba_0827" /note="motif 1; other site" /db_xref="CDD:29816" misc_feature 935730..935741 /locus_tag="Deba_0827" /note="motif 2; other site" /db_xref="CDD:29816" misc_feature 936189..936203 /locus_tag="Deba_0827" /note="motif 3; other site" /db_xref="CDD:29816" misc_feature 936258..936488 /locus_tag="Deba_0827" /note="ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860" /db_xref="CDD:29800" misc_feature order(936282..936287,936390..936392,936408..936410, 936432..936434,936462..936464,936468..936470) /locus_tag="Deba_0827" /note="anticodon binding site; other site" /db_xref="CDD:29800" gene 936638..937150 /locus_tag="Deba_0828" /db_xref="GeneID:9493279" CDS 936638..937150 /locus_tag="Deba_0828" /note="COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR001288:IPR019814:IPR019815:IPR019813; KEGG: eba:ebA870 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; SPTR: Q5P7X6 Translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; manually curated; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-3" /protein_id="YP_003806793.1" /db_xref="GI:302342264" /db_xref="GeneID:9493279" /translation="MAKEQRVRVNESVRAPQVRLISADGEQLGVVSADQALKIAQEAG LDLVEVAPNAAPPVCRVMDYGKYKYEQAKKLQEAKKKQAQTQVKEVKMRPKIDENDFQ VKMRNVQRFLEERNRVKVTVQFRGREIAYAEAGERLLARVAETVQEMASVDAPPSRMG RLMHMILAPK" misc_feature 936638..937147 /locus_tag="Deba_0828" /note="translation initiation factor IF-3; Reviewed; Region: infC; PRK00028" /db_xref="CDD:178804" misc_feature 936647..936838 /locus_tag="Deba_0828" /note="Translation initiation factor IF-3, N-terminal domain; Region: IF3_N; pfam05198" /db_xref="CDD:191228" misc_feature 936911..937147 /locus_tag="Deba_0828" /note="Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707" /db_xref="CDD:189681" gene 937213..937410 /locus_tag="Deba_0829" /db_xref="GeneID:9493280" CDS 937213..937410 /locus_tag="Deba_0829" /note="InterPro IPR001706:IPR018265; KEGG: mgm:Mmc1_0365 50S ribosomal protein L35P; PFAM: ribosomal protein L35; SPTR: A6BKH0 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; TIGRFAM: ribosomal protein L35" /codon_start=1 /transl_table=11 /product="ribosomal protein L35" /protein_id="YP_003806794.1" /db_xref="GI:302342265" /db_xref="GeneID:9493280" /translation="MPKIKTNRAAAKRFRVTGSGRIKRSKANKSHILTKKNTKRLRNL RKSDLVDRSNMAGVRRLLPNL" misc_feature 937213..937407 /locus_tag="Deba_0829" /note="Ribosomal protein L35; Region: Ribosomal_L35p; cl00392" /db_xref="CDD:185963" gene 937438..937788 /locus_tag="Deba_0830" /db_xref="GeneID:9493281" CDS 937438..937788 /locus_tag="Deba_0830" /note="COGs: COG0292 ribosomal protein L20; InterPro IPR005813; KEGG: gme:Gmet_1414 50S ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: C6MWH9 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; TIGRFAM: ribosomal protein L20" /codon_start=1 /transl_table=11 /product="ribosomal protein L20" /protein_id="YP_003806795.1" /db_xref="GI:302342266" /db_xref="GeneID:9493281" /translation="MPRAKRGFKARRRRNKIMKLAKGNVGGRRKLFRTAKETVHRGLV YAYRDRKVRKREFRGLWIVRINAAVREHGLNYSRFIYGLGKANVELDRKVLADLAVSD PAGFAAVAALAKSA" misc_feature 937480..937770 /locus_tag="Deba_0830" /note="Ribosomal protein L20; Region: Ribosomal_L20; cd07026" /db_xref="CDD:197305" misc_feature order(937480..937485,937498..937521,937525..937536, 937543..937548,937558..937563,937570..937614, 937618..937626,937633..937635,937645..937647, 937663..937668,937675..937680,937687..937689, 937711..937719) /locus_tag="Deba_0830" /note="23S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:197305" misc_feature order(937543..937545,937555..937557,937564..937569, 937573..937578,937585..937587,937702..937713, 937720..937722,937738..937743,937759..937764) /locus_tag="Deba_0830" /note="L21 binding site [polypeptide binding]; other site" /db_xref="CDD:197305" misc_feature order(937606..937608,937615..937620,937627..937629, 937636..937641,937645..937647,937717..937719, 937726..937728,937735..937737) /locus_tag="Deba_0830" /note="L13 binding site [polypeptide binding]; other site" /db_xref="CDD:197305" gene 937812..938819 /locus_tag="Deba_0831" /db_xref="GeneID:9493282" CDS 937812..938819 /locus_tag="Deba_0831" /note="COGs: COG0016 Phenylalanyl-tRNA synthetase subunit alpha; InterProIPR004529:IPR006195:IPR010978:IPR004188:IPR 002319; KEGG: sfu:Sfum_0428 phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; SPTR: C8QYJ1 Phenylalanyl-tRNA synthetase, subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha" /codon_start=1 /transl_table=11 /product="phenylalanyl-tRNA synthetase, subunit alpha" /protein_id="YP_003806796.1" /db_xref="GI:302342267" /db_xref="GeneID:9493282" /translation="MFDELKALGAEAVRAIAQAADAAALEALRTSLMGRKGSLTQALR KTGGLPPELRPQFGALVNQVKAQVEAALDEAKDRLGQGAAASGGALDLSLPGARQRRG RLHPVSQTERLILEVFGRMGFDVRESPEVETDWYCFEALNMPPDHPARDMQDTFYVDR GVVLRTHTSPVQIHVMETTPPPVRVVAPGKTYRRDSDATHTPMFHQVEGLLVDKGVSL AHLKGVLTEFLHQIFDADAPVRFRPSFFPFTEPSAEVDIGCVVCGGKGCRVCSHTGWL EIMGCGMVDPNVFRNVGYDPDEVSGFAFGMGVERIAMLRLGIDDLRMFYENDLRFLRQ F" misc_feature 937812..938816 /locus_tag="Deba_0831" /note="phenylalanyl-tRNA synthetase subunit alpha; Validated; Region: pheS; PRK00488" /db_xref="CDD:179046" misc_feature 937893..938042 /locus_tag="Deba_0831" /note="Aminoacyl tRNA synthetase class II, N-terminal domain; Region: Phe_tRNA-synt_N; pfam02912" /db_xref="CDD:111764" misc_feature 938124..938801 /locus_tag="Deba_0831" /note="Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496" /db_xref="CDD:29807" misc_feature order(938124..938126,938133..938135,938142..938147, 938166..938168,938181..938186,938190..938198, 938247..938249,938262..938264,938274..938291, 938334..938336,938355..938363,938373..938375, 938379..938381,938385..938387,938391..938393, 938412..938414,938463..938471,938475..938480, 938538..938540,938559..938567,938571..938573, 938664..938669,938784..938786,938790..938798) /locus_tag="Deba_0831" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29807" misc_feature 938178..938198 /locus_tag="Deba_0831" /note="motif 1; other site" /db_xref="CDD:29807" misc_feature order(938262..938270,938310..938312,938316..938318, 938325..938327,938388..938390,938394..938396, 938406..938414,938421..938423,938427..938429, 938433..938435,938547..938549,938553..938558, 938640..938657,938721..938732,938739..938741, 938772..938774) /locus_tag="Deba_0831" /note="active site" /db_xref="CDD:29807" misc_feature 938385..938396 /locus_tag="Deba_0831" /note="motif 2; other site" /db_xref="CDD:29807" misc_feature 938724..938741 /locus_tag="Deba_0831" /note="motif 3; other site" /db_xref="CDD:29807" gene 938832..941240 /locus_tag="Deba_0832" /db_xref="GeneID:9493283" CDS 938832..941240 /locus_tag="Deba_0832" /note="COGs: COG0072 Phenylalanyl-tRNA synthetase subunit beta; InterProIPR004532:IPR002547:IPR005121:IPR012340:IPR 020825:IPR005147:IPR016027:IPR009061:IPR005146; KEGG: sfu:Sfum_0429 phenylalanyl-tRNA synthetase, subunit beta; PFAM: B3/4 domain protein; t-RNA-binding domain protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: A0LFC7 Phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, subunit beta; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, subunit beta, non-spirochete bacterial" /codon_start=1 /transl_table=11 /product="phenylalanyl-tRNA synthetase, subunit beta" /protein_id="YP_003806797.1" /db_xref="GI:302342268" /db_xref="GeneID:9493283" /translation="MLVPLKWLRQFVDYNVADQDLADLLSLSGLEVEGLQRRHQGLEL VLAAKVLRVEPHPNADRLHLVTVDDGRAEHVVVCGAPGVAPGQIVPLALEGAVLGELT IKRARIRGVESRGMLCSERDLGLSDDHGGLLNLDPTTPLGAPLTEALGLETAVMEISI TPNRGDALGVLGVAREVGALLNLPVRDIDCAPPEDDQPVAALASVEIQAPDACRRYVA RMVRGAVVGPSPLWLRDRLAACGVRPINNLVDVTNYVMMERGQPLHAFDHARLAGGRI VVRRAVADEPFTTLDGQQRKLQEGMLLICDAEKPVALAGVMGGQNSEIEAHTSDVLIE SAFFEPGGIRRTAKALGMGSESSYRFERGVDLEGCAKAADRAAQLMAMLSGGRVCAGR VDAYPRPYQAPAIAVSAARTSALLGLPLDVAAIKRPLEALGLSVEAVGDDSLTAWPPA ARTDLERPVDLIEEVARIIGYDKIPVSTPCGVIGGKPRAREQLVRERLRDLMTAQGFD EAINYSFGHPDWPDKLRLAADDPRRGAVAMQNPLAEDQSALRTSLLPGLLGCVRRNLG HRVADVALFEVGKTFIARPDNPQPHESMRLGAVLCGLAQPVSWFAGEAEVSFAHIRGA VEYLAEAMGLADPRLAQEGPRPPYLEAGQWLAVLVGQRRLGEIGLVAAQVAADFEVKK PVYYLDLDVDLLVQLTPERGQFRHLPRFPEVMRDVALVVDEAVAAGEVLAEARAWGGK LLREARLFDVYKGKPLDKRQKSLGLRLTYRADDRTLTEEEIVPDFEAMVGRLVERFKA ALRA" misc_feature 938832..941237 /locus_tag="Deba_0832" /note="phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629" /db_xref="CDD:179078" misc_feature 938964..939266 /locus_tag="Deba_0832" /note="tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796" /db_xref="CDD:48399" misc_feature order(939012..939014,939111..939113,939147..939149, 939168..939170,939177..939179) /locus_tag="Deba_0832" /note="putative tRNA-binding site [nucleotide binding]; other site" /db_xref="CDD:48399" misc_feature 939465..939986 /locus_tag="Deba_0832" /note="B3/4 domain; Region: B3_4; cl11458" /db_xref="CDD:196242" misc_feature 940044..940244 /locus_tag="Deba_0832" /note="tRNA synthetase B5 domain; Region: B5; cl08394" /db_xref="CDD:195731" misc_feature 940299..940880 /locus_tag="Deba_0832" /note="Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an...; Region: PheRS_beta_core; cd00769" /db_xref="CDD:29814" misc_feature order(940305..940310,940329..940331,940338..940340, 940350..940352,940356..940358,940362..940370, 940437..940448,940479..940481,940521..940523, 940551..940553,940566..940568,940572..940574, 940584..940586,940605..940607,940701..940703) /locus_tag="Deba_0832" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29814" misc_feature 940350..940370 /locus_tag="Deba_0832" /note="motif 1; other site" /db_xref="CDD:29814" misc_feature 940497..940508 /locus_tag="Deba_0832" /note="motif 3; other site" /db_xref="CDD:29814" misc_feature order(940572..940577,940584..940586) /locus_tag="Deba_0832" /note="motif 2; other site" /db_xref="CDD:29814" misc_feature <941043..941234 /locus_tag="Deba_0832" /note="Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; pfam03147" /db_xref="CDD:190543" gene 941271..941648 /locus_tag="Deba_0833" /db_xref="GeneID:9493284" CDS 941271..941648 /locus_tag="Deba_0833" /note="InterPro IPR000551:IPR009061; KEGG: aca:ACP_2017 transcription regulator protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C1F8V8 Transcription regulator protein; PFAM: MerR family regulatory protein" /codon_start=1 /transl_table=11 /product="MerR family transcriptional regulator" /protein_id="YP_003806798.1" /db_xref="GI:302342269" /db_xref="GeneID:9493284" /translation="MAKGDIPDKPYYRIGEIARILGIETHVLRYWESEFPQLRPVRAA SKQRLYRREDLGTLFCIKGLLHDQRYTIAGARQRLDELAAAERQTQATPAPEQPAQPT AEDAADVRGQVLAELKDILRLLS" misc_feature 941304..>941525 /locus_tag="Deba_0833" /note="Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators; Region: HTH_MlrA-like_sg2; cd04765" /db_xref="CDD:133393" misc_feature order(941307..941315,941355..941357,941406..941414) /locus_tag="Deba_0833" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133393" gene complement(941698..942034) /locus_tag="Deba_0834" /pseudo /db_xref="GeneID:9493285" gene complement(942031..942315) /locus_tag="Deba_0835" /db_xref="GeneID:9493286" CDS complement(942031..942315) /locus_tag="Deba_0835" /note="COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: cyn:Cyan7425_1203 DNA polymerase beta domain protein region; PFAM: DNA polymerase beta domain protein region; SPTR: B8HMG8 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain" /codon_start=1 /transl_table=11 /product="DNA polymerase beta domain protein region" /protein_id="YP_003806799.1" /db_xref="GI:302342270" /db_xref="GeneID:9493286" /translation="MDEQLLSKRAEILDIAARHGVRSIRVFGSFARGRASAQSDVDFL VEAGQRRSPFFPGGLIADLEELLGRQVDVVEPEGLHWLIKDRIIAEAIPL" misc_feature complement(942046..942291) /locus_tag="Deba_0835" /note="Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins; Region: NT_KNTase_like; cd05403" /db_xref="CDD:143393" misc_feature complement(order(942100..942102,942106..942108, 942190..942192,942196..942201,942220..942222, 942229..942237)) /locus_tag="Deba_0835" /note="active site" /db_xref="CDD:143393" misc_feature complement(order(942190..942192,942196..942201, 942220..942222,942229..942237)) /locus_tag="Deba_0835" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143393" misc_feature complement(order(942100..942102,942190..942192, 942196..942198)) /locus_tag="Deba_0835" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143393" misc_feature complement(order(942100..942102,942106..942108)) /locus_tag="Deba_0835" /note="antibiotic binding site [chemical binding]; other site" /db_xref="CDD:143393" gene complement(942409..943128) /locus_tag="Deba_0836" /db_xref="GeneID:9493287" CDS complement(942409..943128) /locus_tag="Deba_0836" /note="InterPro IPR019410; KEGG: sfu:Sfum_0452 methyltransferase type 12; PFAM: methyltransferase-16, SPTR: C0GTM9 methyltransferase small; PFAM: Putative methyltransferase" /codon_start=1 /transl_table=11 /product="methyltransferase-16" /protein_id="YP_003806800.1" /db_xref="GI:302342271" /db_xref="GeneID:9493287" /translation="MTNEHNAAPGSAGARQRIEQRFDLVWNPVSIGEVSLILPEHRDP LAYINQRLAAGGDEIDTLPFWTTLWPAAMVLASMVAKAPPTDDGPILELGAGLGLPGL VAAALGRQALITDLEPDALEFAQAAVEANGLEGRARVMALDWAAPPADLGRFRTIYGA EIVYQPKIYPILVDFLASVTAPDGVIFLGHEARPFVPAFFNLAKERFRIKGTRRLING EAGPVEVILYALKPLDAAGKV" misc_feature complement(942511..>942795) /locus_tag="Deba_0836" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(943125..944480) /locus_tag="Deba_0837" /db_xref="GeneID:9493288" CDS complement(943125..944480) /locus_tag="Deba_0837" /note="COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664; KEGG: gme:Gmet_2779 ribonuclease BN; PFAM: ribonuclease BN; SPTR: Q39RX7 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)" /codon_start=1 /transl_table=11 /product="ribonuclease BN" /protein_id="YP_003806801.1" /db_xref="GI:302342272" /db_xref="GeneID:9493288" /translation="MTQDLDWLDKLDRLALGWLWRPDRPAGGPGRAALLALQVAYLSV RNFFGRRLAFQASALTFITLLGLVPALAISFSLAKGLGFADAMRAALFNEFTASQHQV MEYILQYVERTNMGALGVMGLAALIVSLVLALSNAEDAFNRIWEVKETRSLFRKFTDY LSVLIICPLLIVAGTGIWAGMAAHGFVQWLMGQALIGEVAAMGLQLGPVLMLAVAFVF MYMFLPNTRVPFVSAVIAGVVTAGLWWGVQHAYLQFQIGVARYNAIYGGFATLPLFLV WLQVSWTVVLYGAELAHADYLCRNDMLPRALLPPLSPARRQTLGLDLMMIVAHRFHQG LKPLPLVRLAALLGVAPDQAAAAAQRLSQAGLIAPPDQDGLVMPLRDLSNISALELVQ AVGAGPRQGASACLNDQAMARLLGQMENTQAEALGRVSLLELVRRNQTPLTDTDATKT S" misc_feature complement(943599..944330) /locus_tag="Deba_0837" /note="Ribonuclease BN-like family; Region: Ribonuclease_BN; cl07918" /db_xref="CDD:195647" gene complement(944518..946242) /locus_tag="Deba_0838" /db_xref="GeneID:9493289" CDS complement(944518..946242) /locus_tag="Deba_0838" /EC_number="3.5.4.2" /note="COGs: COG1001 Adenine deaminase; InterPro IPR006679:IPR011059:IPR006680; KEGG: dma:DMR_21960 adenine deaminase; PFAM: amidohydrolase; PRIAM: Adenine deaminase; SPTR: C4XSJ0 Adenine deaminase; TIGRFAM: adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase" /codon_start=1 /transl_table=11 /product="adenine deaminase" /protein_id="YP_003806802.1" /db_xref="GI:302342273" /db_xref="GeneID:9493289" /translation="MSDWQGRMAHLLEAARGDRPAQLLLENCRLVNVFSGQVEQTAVA VDDGVVVGLGEGYEGIERIDLDGAYLSPGFIDGHLHVESSFLSPAQFARAVCPLGTSA VVADPHEIANVMGVEGFSAMIDASEDLPVTFFFNASSCVPASPLQDSGAVLGAAEMSL LARHPRVLGMAELMNFPGTVAGFPDILAKLEAFRGRPIDGHAPLLGGKGLNAYLLAGA DSDHECTSLAEAEEKLAKGMWIMIRQGTHAHNMLDLLPLVTPRTERRCLLVCDDRQAD TIAQRGHLDDLLRLAVDNGLDAPTAIRLVSLNPARRFGLSRRGAIAPGYVADMVALQD LRDFQVTKVWRAGKLVAENGRCLHPCQTPFSDAARQTMRLPALNEDLLRAPAGGKRAR AMALIANQILTDENVVATPQRDGQLVADPERDLALLFIIERHKASGRRGVGLMRGLGI IDGALASSVAHDSHNLVLVGADRPSMLAAARAVAAMGGGLAVAKGGRVLATLALPLAG LMSDAPYEDVAAEISELNMAAAQVCRFRDPFMALSFAALEVIPHLKLTDQGLVDVDAF GHVSLYVD" misc_feature complement(944524..946242) /locus_tag="Deba_0838" /note="Adenine deaminase [Nucleotide transport and metabolism]; Region: AdeC; COG1001" /db_xref="CDD:31205" misc_feature complement(<945187..946053) /locus_tag="Deba_0838" /note="Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen...; Region: AdeC; cd01295" /db_xref="CDD:73254" misc_feature complement(order(945430..945432,945577..945579, 945640..945642,946003..946005,946009..946011)) /locus_tag="Deba_0838" /note="active site" /db_xref="CDD:73254" misc_feature complement(944557..>944961) /locus_tag="Deba_0838" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" gene 946345..948261 /locus_tag="Deba_0839" /db_xref="GeneID:9493290" CDS 946345..948261 /locus_tag="Deba_0839" /note="COGs: COG0729 Outer membrane protein; InterPro IPR010827:IPR000184; KEGG: sfu:Sfum_0758 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: A0LGA4 Surface antigen (D15); PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein" /codon_start=1 /transl_table=11 /product="surface antigen (D15)" /protein_id="YP_003806803.1" /db_xref="GI:302342274" /db_xref="GeneID:9493290" /translation="MIKLFYRIMIICAISALCWPGPGQALERPGLVGKALEAPRAIGQ ALETAVGARDDQGGPPLITAVDLTGVDNAPKDTLLGMLEAAPRVEPGAEKAKRYDPLM AQRDIRRIQRAYEAHGYFNVQVKARLEPGALPGVTRLIYDVHENSPVLIDKILLTLPD EPAQRRWSRRLVRVSGLKAGERFSLAAYEKAKGAIKAYLAERAHPKAKVRGQARIYPE ELRAEVALEIDPGAQYFFGPPVVVGNKRMSERYILSRLKFTPGQPFKASVLEASQQEL LNSGFFDSAVLSPDYLAPIQGKRLPIQVVVDERPAHGVQLGLGWGTEEGARLRLDQTN RNILGLNEEISFRGKISEIYQGLVAAVRLPQTPLERTETLVRVGVEQPDNQAYESRNH FAMPVLETHLDKYARAWVGYLYEQSRMVNLKAAVPDKAFENQTFLISSVKAGVNFDSR DSPLNPTRGSQIALEVEWATNGLGSELSFVRPQIEASQIFGLPGWRGWYVALRAKAGF TIGYGDDQRIPLIRRFFPGGPDSVRGYPYQCLGPLDSAGKPLGGEAMIVGNAELRFPL WRELGGVIFLDAGNAYESIDTDMGALRYAAGLGLRYNTPVGPVRVDWGYQLNPDPNAP IDDNQFYFSVGQAF" misc_feature 946453..948258 /locus_tag="Deba_0839" /note="Outer membrane protein [Cell envelope biogenesis, outer membrane]; Region: COG0729" /db_xref="CDD:31073" misc_feature 946522..946782 /locus_tag="Deba_0839" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 947062..947271 /locus_tag="Deba_0839" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 947350..948258 /locus_tag="Deba_0839" /note="Surface antigen; Region: Bac_surface_Ag; cl03097" /db_xref="CDD:155280" gene 948261..951812 /locus_tag="Deba_0840" /db_xref="GeneID:9493291" CDS 948261..951812 /locus_tag="Deba_0840" /note="COGs: COG2911 conserved hypothetical protein; InterPro IPR007452; KEGG: rce:RC1_3925 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: B6IY93 Putative uncharacterized protein; PFAM: Family of unknown function (DUF490)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806804.1" /db_xref="GI:302342275" /db_xref="GeneID:9493291" /translation="MTRKLPGMGVLLKIAAGVALFAALAIGGLIAALQHPAVEGWLLA QANQALAQTLDARVSVAKLSGSKLFGLRGRGVEFWHGGRLMARADDLRVRYSLFDLLG GERVKLDGVKIEGLWVDLDVVMALADYAAGPDDDPAAGAAGGADEAVVELWFPRIELR GAAVEGRGWMGPVRWARAIDLKASLRLSAAGRLRIAASVAKARAAMDGVGQELEVSAQ ALLDGDGVTAEDLRVRAGQATAQGRAMVNWGDKLLLEGDLRLDNLLAAGLTGLQKLPP ALGQGLALKVDGGLDGLNVALDNQPLQARLRTIFSYEAGVLALRQIDLQAPWGRAEGR LSLGLEQPGLWREIDLRVKDLRAPAPLAGLLPADLGQARLSGHLALGPEGQELAWRLT LKDTTLWPWLSLTSLTAQGLMAPEPELRALKAELGWARAELDGRVGLAGAQARLTLVI DDLARGAELAAQAGWSPPAPLAGRLTADVAIDGPWSAPDLALTVQGHELVLPNVAARR ASLEGHVSGLLAPTGRLRLEAQGVRSGEVSFDRLDLDYDRQVATAGLDFAAQGPDLRA QGRLSHAGGGWLPTSGALEELRLWALGGGPWELSRPAGWRQKDGAFWLERLELVSQGQ KVAVWGMIDAAGPVAANLAVENLRLATLDAELPGALAVGQLRLDAALGGTLAAPTLRF EGLLDEAAGPAAPELDLEFAGGYEAGRLELDGLVRAKGRPTLSLAARLGLALSLRPPV VEPTAPGLDCRLWADDQDLALLGPYLPGVGELSGRLDLDLTCRGPWERPRLDGRAAID DGRLVILAGDQAIEGLRARLSLDDHELVVEEVSARTDPGAPPLTLRGRVSLPLGREDG RWDLRLAGRGVVVGLGDLGWVSTDVDVGLAGPWAAAALQGKISPRRALVRYKMLPPAG MSEIVVLRPGQEPPPIGRDQTIWRPGGLLAGWSMDVLVDLSERLRVEMEEGWLSAVGG LRLTKAPGGHIVYSETVTIENGLLVVFGRRISIDRGKIAFGGKTSLDPNLDIQASLNM GSIAVFANIMGAVSEPSVHLSSQPPLNQADLLSTIVFGRPSRELSGAQQEYLSAQALA LLGLRGSQELRRFLGPELAPDVVTVHDSRQFGSSLEAGKFIGEDLYLRYRKNLGEDGG QNVGVEYRFSPHFSVESQVGTTRDTGVDVLTNWQWGD" misc_feature <949671..951788 /locus_tag="Deba_0840" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2911" /db_xref="CDD:32735" misc_feature 950898..951803 /locus_tag="Deba_0840" /note="Family of unknown function (DUF490); Region: DUF490; pfam04357" /db_xref="CDD:190952" gene complement(951829..952647) /locus_tag="Deba_0841" /db_xref="GeneID:9493292" CDS complement(951829..952647) /locus_tag="Deba_0841" /note="COGs: COG1102 Cytidylate kinase; InterPro IPR007055; KEGG: gbm:Gbem_2312 transport-associated; PFAM: transport-associated; SPTR: C6MT75 Transport-associated protein; PFAM: Putative phospholipid-binding domain" /codon_start=1 /transl_table=11 /product="transport-associated protein" /protein_id="YP_003806805.1" /db_xref="GI:302342276" /db_xref="GeneID:9493292" /translation="MSIITVSGEMGSLRDELALCISQQGGLECVDRRTLMEAVEGLVE LSRDEHQLLAEQGPALLDMSIRRRRVFAAFLETVVLQYAQKGDVVLVGRGANLLLRLV PGVLRVRTVAPLELRASRLAQRDNLEMDRARQLATVVDQQRRAYLAHVFGADWSSPLS YDMVLNMGRLSLDQAATTVLDLAAHPEFQLSDESRRLIADMVMASKVRRQMVAEVDVH ALEVTSEDGVVTIAGYVASPEDRRRALNLARQTPGVAEVRSALEVSPTLMKFLP" misc_feature complement(952105..952641) /locus_tag="Deba_0841" /note="Cytidylate kinase [Nucleotide transport and metabolism]; Region: Cmk; COG1102" /db_xref="CDD:31299" misc_feature complement(951853..952038) /locus_tag="Deba_0841" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" gene complement(952770..953621) /locus_tag="Deba_0842" /db_xref="GeneID:9493293" CDS complement(952770..953621) /locus_tag="Deba_0842" /note="KEGG: cpy:Cphy_3493 acyltransferase 3; SPTR: Q3HTI6 Putative acyltransferase; PFAM: Acyltransferase family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806806.1" /db_xref="GI:302342277" /db_xref="GeneID:9493293" /translation="MSGKYYICTQSETSGEFLIKRVFRIYPLFIVAVLTEGAFSIYHG AEAPKLSVLIPRLLLIGDVFQTNLALGGVEWTLRVEITFYVFMAALSYLNLIKQRKII LPCVMVATIFICALCSPFPHVGWTKSYLTMYGPFLLLGSMIYLYEIRQVKLSFLLIFV CMVFGNLFWQTATYQPRLINSHFSALAFLLFIIMWAFRSHLKVTPFILFLSDLTYSVY LFHKWLFGIIKHAIGPWGIPFIPLDIQVLIVLFTLCSLLVALIEKPGIRLGRKIVTRL NRRRQPA" misc_feature complement(952773..>953579) /locus_tag="Deba_0842" /note="Predicted acyltransferases [Lipid metabolism]; Region: COG1835" /db_xref="CDD:32020" gene complement(953645..954694) /locus_tag="Deba_0843" /db_xref="GeneID:9493294" CDS complement(953645..954694) /locus_tag="Deba_0843" /note="InterPro IPR001584:IPR012337:IPR009057; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain" /codon_start=1 /transl_table=11 /product="integrase catalytic region" /protein_id="YP_003806807.1" /db_xref="GI:302342278" /db_xref="GeneID:9493294" /translation="MTTEKKVARRKLSLLELAGELSNVSRACKLMGYSRQQFYEIRRN FQTYGAQGLVDRLPGPKGPHPNRVEAEVEAAIMAYSLEYPTHGALRVSQQLALRGVQV SSGGVRGVWSRHEMLTRHERLLRLEQSVRAQDIQLSDEQIRALERFSPEFRDRHIEAR HTGALVAVDTFFVGALKGVGKVYLQSVIDCHSRHAWGRLYTSKLPVTAVHVLNEEVLP CFEAHDAVIETVLSDNGREFCGRPDQHPYELFLQLEGIEHRTTRVRRPQSNGFVERLH RTLLDEHFRIKGRQKWYETLDEMQADLDEYLRHYNHERAHQGRNMNGRTPSQAFLEGL PGRKKPKEKASQKAA" misc_feature complement(953849..954223) /locus_tag="Deba_0843" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(955090..956433) /locus_tag="Deba_0844" /db_xref="GeneID:9493295" CDS complement(955090..956433) /locus_tag="Deba_0844" /note="COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR006405:IPR015977:IPR007229; KEGG: sen:SACE_2423 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: A4FCE6 Nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: nicotinate phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="nicotinate phosphoribosyltransferase" /protein_id="YP_003806808.1" /db_xref="GI:302342279" /db_xref="GeneID:9493295" /translation="MRPAALALHTDFYQLTMAASYFEHGLDQQATFSLFAHATPPERG YMVAAGLEDCLEYLENFRFSAEEIDYLRSLGRFSRGFVDYLAGMRFGGEVWAAPEGTV FFAEEPILELSASLIEAQLVETFLVNTVNHNSTIAAKAARCQQAAAGRACVDFSLRRT MGLDAGFAAARSSAIAGFGGTSNVAAAMALGLKPVGTMAHSFIQAVGDEKNAFDLFAQ TFPDHTVLLVDTYDTARGLARAVETARTLAAQGHAMIGVRLDSGDLAAMSRLARQTLD AAGLERALVMVSGNLDEYRIADLLAAGAPIDMFGVGTRMGASADQPYTDFTFKLVAYQ GRPTLKLSEGKMTWAGAKQIYRSHDAAGIISGDELCLRHEARPAKALLQPMMQGGRRL APPVGWAAAQQVLQAELASLPAQCRLIRAPQPLAPTVSPLLRQVQDDARQAALAK" misc_feature complement(955135..956433) /locus_tag="Deba_0844" /note="nicotinate phosphoribosyltransferase; Validated; Region: PRK09243" /db_xref="CDD:181722" misc_feature complement(955441..956415) /locus_tag="Deba_0844" /note="Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting...; Region: NAPRTase_A; cd01570" /db_xref="CDD:29617" misc_feature complement(order(955486..955488,955495..955500, 955504..955506,955567..955572,955654..955656, 955888..955893,955957..955965)) /locus_tag="Deba_0844" /note="active site" /db_xref="CDD:29617" gene 956673..958043 /locus_tag="Deba_0845" /db_xref="GeneID:9493296" CDS 956673..958043 /locus_tag="Deba_0845" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR002078:IPR011006:IPR 009057:IPR020441:IPR002197; KEGG: dvu:DVU3381 transcriptional regulatory protein ZraR; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: Q725P3 Transcriptional regulatory protein zraR; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806809.1" /db_xref="GI:302342280" /db_xref="GeneID:9493296" /translation="MVANQMKILVIDDDPALRDACREILRRQGHHVELAEGGRGGLAL LGKFAFDVIMLDLRMPDIDGMTVLRRIIEQDPHAVVIIISGHGSIERAVEAMKLGAFD FVSKPFTPDRLRGAVEKAREKRQLILENAYLKDEIKRRSPTRMIYRSAAIEKIMDLAR RVAMSDATVLLTGQSGTGKGILARIIHELSARRSSPFVAVDCSTLVPTLFESELFGHV KGSFTGADADKMGKFELSDGGTLFFDEVANISWEIQAKLLKAVEDRAVCRVGSNRLIS VDTRLVAATNQNLAQAVQAGTFRQDLFYRLNVVHIELPPLKDRPEDVPVLAEYFLDRY RYRSPSRVRGFAPQAMEALARQPWPGNVRELENAVQRLAVLAGGELITLADIEAGSPA AVHSGADDGELLSLAELEKRQIIRAMNRLAGHRGEMAKALGIDRKTLRLKIRKYGLED QGPDAD" misc_feature 956679..958037 /locus_tag="Deba_0845" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 956697..957032 /locus_tag="Deba_0845" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(956706..956711,956838..956840,956862..956864, 956922..956924,956979..956981,956988..956993) /locus_tag="Deba_0845" /note="active site" /db_xref="CDD:29071" misc_feature 956838..956840 /locus_tag="Deba_0845" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(956847..956852,956856..956864) /locus_tag="Deba_0845" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 956988..956996 /locus_tag="Deba_0845" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 957123..957617 /locus_tag="Deba_0845" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 957189..957212 /locus_tag="Deba_0845" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(957192..957215,957402..957404,957528..957530) /locus_tag="Deba_0845" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 957390..957407 /locus_tag="Deba_0845" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 957585..957587 /locus_tag="Deba_0845" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 957885..958010 /locus_tag="Deba_0845" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene 958151..958774 /locus_tag="Deba_0846" /db_xref="GeneID:9493297" CDS 958151..958774 /locus_tag="Deba_0846" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dat:HRM2_30840 PhoR; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C0QKS7 Sensor protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003806810.1" /db_xref="GI:302342281" /db_xref="GeneID:9493297" /translation="MPEPGSDPFSPENTRVLIIDDEASMREACQEVLRREGFQTTIAG EGGEGLRLVRELKPHVIFVDLKMPGMAGLELLDHIGLAAPGAVLVVVTAYATVSLAMA ALRHGAFDFLAKPFTPDELRLMASRAQEQRRLLERGQRLQNERDQAKRRFMELVTGEV NEPLRAALAELRGLCEKLADRPAALAQAQNASERLRRLLEMVQHLSA" misc_feature 958196..958522 /locus_tag="Deba_0846" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 958199..958516 /locus_tag="Deba_0846" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(958208..958213,958340..958342,958364..958366, 958424..958426,958481..958483,958490..958495) /locus_tag="Deba_0846" /note="active site" /db_xref="CDD:29071" misc_feature 958340..958342 /locus_tag="Deba_0846" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(958349..958354,958358..958366) /locus_tag="Deba_0846" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 958490..958498 /locus_tag="Deba_0846" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(958835..959908) /locus_tag="Deba_0847" /db_xref="GeneID:9493298" CDS complement(958835..959908) /locus_tag="Deba_0847" /EC_number="2.6.1.42" /note="COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005786:IPR001544:IPR018300; KEGG: bsu:BSU38550 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: C8R2U2 Branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II" /codon_start=1 /transl_table=11 /product="branched-chain amino acid aminotransferase" /protein_id="YP_003806811.1" /db_xref="GI:302342282" /db_xref="GeneID:9493298" /translation="MNIAKTLKPKDQLKPKPADENNLGFGRIFTDHMLLMDYQTGKGW HNPRVEPYGPFTLDPAAMIFHYGQEVFEGLKAYRGEGGHVYMFRPAANIERMNRSCDR LCIPALPNEVVLEAMYELIRVEQDWIPRAEGTSLYVRPTIIATEACLGVKTSATYLFY IITGPVGAYYAEGFNPVRIWVEEKYVRAAIGGTGEAKTSGNYASSLKAATEAHEKGFT QVLWLNACDRQSIEEVGTMNIFFKIAGEVITSPLDGSILPGVTRDSVLALCRHWGMNV SERQLTIDDIIAAAKAGTLEEAFGTGTAAVISPVGSIHFKGQDYQVADGQTGALSLKL YDEITGIQLGKKPDPFGWVVKVA" misc_feature complement(958838..959869) /locus_tag="Deba_0847" /note="branched-chain amino acid aminotransferase; Provisional; Region: PRK13357" /db_xref="CDD:183996" misc_feature complement(958877..959743) /locus_tag="Deba_0847" /note="BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-...; Region: BCAT_beta_family; cd01557" /db_xref="CDD:29568" misc_feature complement(order(959237..959239,959279..959281, 959291..959293,959297..959299,959312..959314, 959429..959431,959450..959452,959462..959470, 959486..959488,959492..959494,959603..959605, 959696..959698,959702..959704,959708..959722, 959729..959743)) /locus_tag="Deba_0847" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29568" misc_feature complement(order(959000..959002,959126..959131, 959210..959212,959303..959305,959318..959320, 959456..959458,959624..959626,959696..959698, 959711..959713)) /locus_tag="Deba_0847" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:29568" misc_feature complement(959318..959320) /locus_tag="Deba_0847" /note="catalytic residue [active]" /db_xref="CDD:29568" gene complement(959905..960966) /locus_tag="Deba_0848" /db_xref="GeneID:9493299" CDS complement(959905..960966) /locus_tag="Deba_0848" /EC_number="5.3.1.23" /note="COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; InterPro IPR005251:IPR011559:IPR000649; KEGG: pth:PTH_1730 translation initiation factor 2B subunit; PFAM: initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: A5D1G8 methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase" /codon_start=1 /transl_table=11 /product="translation initiation factor, aIF-2BI family" /protein_id="YP_003806812.1" /db_xref="GI:302342283" /db_xref="GeneID:9493299" /translation="MTIRPIYWQDEAVMILDQRLLPGKLVYLPCRDMRRVIHCIKTLA VRGAPAIGVAAAMGLVLAARAIKADDPAKFRAALARRAQVMAQARPTAVNLAWACGQM LETARAAEGEVSAIVEALYHKSQRMLEDDIAINQAMGRHGAALVPHGATILTHCNAGA LATGGYGTALGVARAAAEAGKNPSVIADETRPLLQGARLTAWEMVQENIPVRVAPDSA VGVIMSRGMVDLVVVGADRIAMNGDVANKVGTFNVALQAQRHGVPFYVAAPLSTIDPG AKSADDIPIEERAAVEITKLGGRAIAAPGAGAINFAFDVTPNDLVTAIITEVGVLRPP YEKSLAQAKANEKIQGAGR" misc_feature complement(959941..960966) /locus_tag="Deba_0848" /note="Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]; Region: COG0182; cl00348" /db_xref="CDD:189086" misc_feature complement(959968..960834) /locus_tag="Deba_0848" /note="Initiation factor 2 subunit family; Region: IF-2B; pfam01008" /db_xref="CDD:189800" gene complement(960968..962398) /locus_tag="Deba_0849" /db_xref="GeneID:9493300" CDS complement(960968..962398) /locus_tag="Deba_0849" /note="COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); InterProIPR004413:IPR003789:IPR006075:IPR006107:IPR 018027:IPR017958; KEGG: dma:DMR_31400 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; PFAM: GatB region; GatB central domain protein; Asn/Gln amidotransferase; SPTR: Q1NKQ9 Glutamyl-tRNA(Gln) amidotransferase B subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(Gln) amidotransferase, B subunit" /protein_id="YP_003806813.1" /db_xref="GI:302342284" /db_xref="GeneID:9493300" /translation="MDYEAVIGLEVHAQLLTRSKIFCGCSTSFGQPPNSNVCPVCLGM PGVLPVLNQQVVELAMRAALATGCQVAERSVWARKNYFYPDLPKGYQISQYELPLAQH GRLEITVDGQEKCVGITRIHMEEDAGKLVHDPSLPQSYVDLNRTGVPLIEIVSEPDMR SPEEAGAYLRALRDILVYLEVCDGNMEEGSFRCDANVSIRPLGQEKLGTRAELKNMNS FRNVMKAIDYEIRRQKAILDEGGQVIQQTRLWDDAAGKTVAMRGKEEAHDYRYFPDPD LLPLEIAPAWLARVGQGLPELPAAKRQRFQQAHGLSAYDAEVLCAERALADYFEAAVN AGAPAKAAANWIMSDLLGALRAEGQAIGQCAVTPQALAELLALVASGQISGKIAKDIF PLMLETGQSAATIVEQKGLRQVSDSGELQAVLERIIAESPKEAEGYRAGKKKLMGYFV GQVMKATKGQANPQAVNELVEKLLGD" misc_feature complement(960977..962398) /locus_tag="Deba_0849" /note="aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated; Region: gatB; PRK05477" /db_xref="CDD:180111" misc_feature complement(961529..962389) /locus_tag="Deba_0849" /note="GatB/GatE catalytic domain; Region: GatB_N; pfam02934" /db_xref="CDD:145865" misc_feature complement(960977..961417) /locus_tag="Deba_0849" /note="GatB domain; Region: GatB_Yqey; cl11497" /db_xref="CDD:159498" gene complement(962465..963646) /locus_tag="Deba_0850" /db_xref="GeneID:9493301" CDS complement(962465..963646) /locus_tag="Deba_0850" /note="COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR011701:IPR005829; KEGG: dol:Dole_1430 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZZ81 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_003806814.1" /db_xref="GI:302342285" /db_xref="GeneID:9493301" /translation="MQRTADDKLLLILGLAVFVAMLGVGSIVPFLSIYGQRLGASGAL IGLIFSAFSFSRGLFAPLVGLVSDRVGRKLFIALGLAGNVGAAVALLFAQSAWDLLFC RMAQGVFAAMILPVCLALVADLTPAGQEGRYVGGFNTAFLLGFGLGPFLGGVVYDVWD MAGNLYLMGGFSLLALAAVWLGVREPRGGRGKIGGASHGMRLYADRAFVGLMLARVGM AAGMGCFIAFLPLLAVEKGLAQAQVGTLLGLNVIVMVAVQRPGGALADRWPRLPLALA GLVASGACKAALPLCDGFWQMAGAALLEGLGSGLGLPPLMALVIGRGKDLGVEMGATM GAFTLALSLGVFAGPPVGGWLADQAGQAGPLYFAGAVTIVGALAMAALTGSARVGLGR S" misc_feature complement(962486..963646) /locus_tag="Deba_0850" /note="Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814" /db_xref="CDD:32643" misc_feature complement(962501..963619) /locus_tag="Deba_0850" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(962612..962614,962621..962626, 962633..962638,962645..962650,962687..962689, 962696..962701,962711..962713,962720..962725, 962732..962734,962873..962875,962885..962887, 962894..962896,962906..962908,962918..962920, 962957..962959,962966..962971,962978..962983, 962990..962992,963212..963214,963230..963235, 963242..963247,963281..963283,963290..963295, 963302..963307,963314..963319,963455..963460, 963464..963469,963479..963481,963488..963493, 963500..963502,963551..963556,963560..963568, 963575..963577)) /locus_tag="Deba_0850" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(964059..964994) /locus_tag="Deba_0851" /db_xref="GeneID:9493302" CDS complement(964059..964994) /locus_tag="Deba_0851" /note="InterPro IPR014729:IPR006015:IPR006016; KEGG: dol:Dole_1866 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZSD3 UspA domain protein; PFAM: Universal stress protein family" /codon_start=1 /transl_table=11 /product="UspA domain protein" /protein_id="YP_003806815.1" /db_xref="GI:302342286" /db_xref="GeneID:9493302" /translation="MDKKIIIAVDGSAECDRAVDYVGLMEGAMIKDLMVTLFFVMNPV PQFLRREAHKDPESYKRLKELQSRNRQQADAVLGQAKARLMRHGLPEERIETKALPRN ADAARDILFEAEQGLYDALVLGRRGLSKAQEFFVGSVTNKIVQHAERVPVWIVGGRVH SLKILCAVDGSEGSLRAVDHMAFMLGGNPECQITLFHVGASLANYCSIDFDAPLDGEL EGDIMKSDGECMADFYHRAVKVLEESGIAADQIETRTHENARSVTTAIVNEVKNGDYG TVVVGRRGENRSFFLGHVSDKVVAKCADVAVWVVG" misc_feature complement(964530..964985) /locus_tag="Deba_0851" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(964575..964586,964614..964619, 964623..964628,964875..964877,964965..964973)) /locus_tag="Deba_0851" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" misc_feature complement(964119..964508) /locus_tag="Deba_0851" /note="Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide; Region: AANH_like; cl00292" /db_xref="CDD:193753" gene complement(965009..965290) /locus_tag="Deba_0852" /db_xref="GeneID:9493303" CDS complement(965009..965290) /locus_tag="Deba_0852" /note="KEGG: dvm:DvMF_2890 hypothetical protein; SPTR: B8DRJ0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806816.1" /db_xref="GI:302342287" /db_xref="GeneID:9493303" /translation="MRDDNAHGGILPPNPLDDPENRRRIASLEREIEDFAREQKEVEA QAHELMARELAGEGPFAQEIHRLKQRKMVLITQAQANRARINQILWGTR" gene complement(965418..966719) /locus_tag="Deba_0853" /db_xref="GeneID:9493304" CDS complement(965418..966719) /locus_tag="Deba_0853" /EC_number="6.2.1.30" /note="COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: ate:Athe_1504 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: phenylacetate--CoA ligase; SPTR: A5ZDJ1 Putative uncharacterized protein; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="phenylacetate--CoA ligase" /protein_id="YP_003806817.1" /db_xref="GI:302342288" /db_xref="GeneID:9493304" /translation="MIWNEKIECASLDQMQALQLAKLQETVAWVYDRVPFYRNKFDSM GLKPDDVKSLEDLAKLPLTVKTDLRDNYPFGLCAVPMDDVVKIHASSGTTGKPITGPY TADDINQWRECVARNLHAAGVFKKDIVQVAYGYGLFTGGLGLQGGCDLIGCATIPASS GMTERQVTIMRDFGSTVLCCTPSYALTIAEKAADMGVDIRELPLRVGVFGAEPWTVEM RQEIEERMGIRAHEVYGLTELMGPSVSFDCQQQDGFMHINEDHVLAEVIDPVTEEVLP LGEKGELVFTAIQRRAMPLLRYRTRDITELRRETCSCGRTLLKMKKVLGRSDDMLIIS GVNVFPSQVESILLEVPEVEPQYVLIIRKKGYLDALSVDVEAKAEVYDQGEEKLQAVE KRIEGKIRGTIGIGVKVRLVPPKSIERSEGKAKRVFDARKL" misc_feature complement(965427..966698) /locus_tag="Deba_0853" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 966823..967449 /locus_tag="Deba_0854" /db_xref="GeneID:9493305" CDS 966823..967449 /locus_tag="Deba_0854" /note="KEGG: dma:DMR_34840 hypothetical protein; SPTR: C4XK82 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806818.1" /db_xref="GI:302342289" /db_xref="GeneID:9493305" /translation="MGKKRRACHGRPAGHKIKAMEQPRQTSSVQTICARCHLAGDGCC RIADDRRGGVFGLTRGEIELMAQASGLAPEAFVEADQAKAAFVAGVNKIHPILGQTMP GGRRLRLRLQADGSCYFLGPAGCQLPVAARPIYCRLYPFWFTPGGRLMVLGSRTCLAQ QGARRVSEVLARLGQNEADLRRLFRRLEEFVAGHQPEAYDSSSPGHGA" gene complement(967416..967742) /locus_tag="Deba_0855" /db_xref="GeneID:9493306" CDS complement(967416..967742) /locus_tag="Deba_0855" /note="KEGG: cdl:CDR20291_0586 hypothetical protein; SPTR: B0PCE4 Putative uncharacterized protein; PFAM: Pathogenicity locus" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806819.1" /db_xref="GI:302342290" /db_xref="GeneID:9493306" /translation="MAIGTERGAADDLRRIPGVGPAMAGDLRALGFGRVVELRGHDPT ALYERLRVLAGGRLDRCVLYVLRCVIYFASVENPRGDLLKWWNWQDKARSSWRPHAPW PGDDES" misc_feature complement(967470..967724) /locus_tag="Deba_0855" /note="TfoX N-terminal domain; Region: TfoX_N; cl01167" /db_xref="CDD:197421" gene complement(967767..968378) /locus_tag="Deba_0856" /db_xref="GeneID:9493307" CDS complement(967767..968378) /locus_tag="Deba_0856" /note="COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterProIPR006200:IPR011991:IPR011056:IPR015927:IPR 006197:IPR006199:IPR019759; KEGG: dal:Dalk_2674 SOS-response transcriptional repressor, LexA; PFAM: LexA DNA-binding domain protein; peptidase S24/S26A/S26B, conserved region; SPTR: B8FIX5 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA binding domain; peptidase S24-like; TIGRFAM: SOS regulatory protein LexA" /codon_start=1 /transl_table=11 /product="LexA family transcriptional regulator" /protein_id="YP_003806820.1" /db_xref="GI:302342291" /db_xref="GeneID:9493307" /translation="MTKGLTARQREVLDFIAHFQESRGYPPTVREVAGHFGFRSPRAA HDHMKALERKGFLRSEAGRPRALEVIGARKRAHGGIPMLGRIAAGQPIMAAEEADEFV DIDPAYFGSGAFFALRVRGESMIGDHIADGDMVILRSQTTAQPGQVVAAMIDDEVTLK HYHPGADVLELRATNPAVANIRVGRGDGPTRILGVMVGLVRRT" misc_feature complement(968181..968372) /locus_tag="Deba_0856" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(967773..968366) /locus_tag="Deba_0856" /note="LexA repressor; Validated; Region: PRK00215" /db_xref="CDD:178931" misc_feature complement(967788..968036) /locus_tag="Deba_0856" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature complement(order(967899..967901,968010..968012)) /locus_tag="Deba_0856" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 968597..969715 /locus_tag="Deba_0857" /db_xref="GeneID:9493308" CDS 968597..969715 /locus_tag="Deba_0857" /note="COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: aeh:Mlg_1873 diguanylate cyclase; PFAM: Metal-dependent hydrolase HDOD; SPTR: Q0A7H0 Diguanylate cyclase; PFAM: HDOD domain" /codon_start=1 /transl_table=11 /product="signal transduction protein" /protein_id="YP_003806821.1" /db_xref="GI:302342292" /db_xref="GeneID:9493308" /translation="MSDLGQQIIQRVLAKGNLPALSTIAVRLMQMAADDMVSVSELAE LISQDPGLATRLLRLVNSVAYRRGDEVASVQRAVALLGLNEVRVLALSVSLKDALPAK GGGHDYNLFWRTSLHRAILARHGAAALGMPNPEEAFVAGLITEIGLPLLLRVLSPQEA EGFPGFEKSLRDQVVWAHRALGVDHRQLGRAVLSFWGLPEVLHDSQRIIPPSTESSAP PMALLCDFARRAAESFFAPGADLEDVHRVAKLRFGWSAEEANQLLFDSLSQAGEVAEA MEIDLDQEHDIGAVLEKARQTIIELRARMVGELRLGGPGRQQAFLQFKSRLLGLGGLA RKLAEALSGKEQTQAAEEELLRLDQALAQIEAALAQRA" misc_feature 968648..969202 /locus_tag="Deba_0857" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(969727..970200) /locus_tag="Deba_0858" /db_xref="GeneID:9493309" CDS complement(969727..970200) /locus_tag="Deba_0858" /note="COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR003736:IPR006683; KEGG: dal:Dalk_1038 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: B8FK66 thioesterase superfamily protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003806822.1" /db_xref="GI:302342293" /db_xref="GeneID:9493309" /translation="MSAPRALNPQWIAAVLAGVNPCPYFQLQSMRLEDLAWGRAELRI DLARKHLQPFGVAHGGVVASIIDAACFWACFSQAPVGKGMTTVDIKLNYLAPAVDGAL LASGRCLKLGRGLGLGEASVRDRTGRLLAQGLSTVMLVDNLALPGQEDWPAKFLG" misc_feature complement(969784..970113) /locus_tag="Deba_0858" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature complement(order(969913..969924,969943..969945, 970030..970032)) /locus_tag="Deba_0858" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(969922..969924,969928..969942, 970012..970014,970021..970023,970027..970029)) /locus_tag="Deba_0858" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(969943..969945,969985..969990, 969997..970002,970024..970026)) /locus_tag="Deba_0858" /note="PHB binding site; other site" /db_xref="CDD:48038" gene 970449..970841 /locus_tag="Deba_0859" /db_xref="GeneID:9493310" CDS 970449..970841 /locus_tag="Deba_0859" /note="COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: dba:Dbac_2275 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: C7LQF5 Dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_003806823.1" /db_xref="GI:302342294" /db_xref="GeneID:9493310" /translation="MKVAVPSMAPGGLEAQTSAHFGHCDAFTILEYDNGQIGAVEVLF NQGHVQGGCMAPVMTLKNAGVDVLLSGGMGARPLMGFQQVGIDVYFMGGAPTVNLAVE LLASGAAPKFGPAQVCGGGEGGCGGHDH" misc_feature 970449..970760 /locus_tag="Deba_0859" /note="This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of...; Region: MTH1175; cd00851" /db_xref="CDD:29645" gene complement(970955..972613) /locus_tag="Deba_0860" /db_xref="GeneID:9493311" CDS complement(970955..972613) /locus_tag="Deba_0860" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_3279 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FJ42 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806824.1" /db_xref="GI:302342295" /db_xref="GeneID:9493311" /translation="MTLQTRQIEKSPNAYGYPLLLKNILRTPLIYSPDQEIVYRDKKR MTYRDLAARISQLGSGLLAMGVKPGDVIGIMDWDSDRYLASYFAVPGIGAVMHTINVR LSPEQVLWTMNHAEDAVVFVHEDFIPIVEAIKDQAKTVKKWILIKETDAPVKSSVAFD CEFEEILAKGAADYEFPDFDENTMATLFYTTGTTGDPKGVYFSHRQLMLHTLAMSVAT GAFAGNGRIHSDDVYMPITPMFHVHAWGVPYVATMLGIKQVYPGRYEPEMLLKLLISE KVTFSHCVPTILHMLVSSPVAKKVDLRGWKVIIGGSALPRGLAKAAMELGIDIYTGYG MSETCPLLTLSALSPDMLSLDTEAQLDFRTKTGRAVPLVDIRIVDPMMKDTPKDNQTA GEIVVRAPWLTQGYYKNPDKGKELWEGGYLHTGDVAVIDDKGWIRITDRIKDVIKTGG EWISSLELESLISQTPGVSEVAVVGVPHEKWGERPVAMVVALPETSGEALPEAIKNHL AKFVDDGTISKWAIPEQINVVAAIPKTSVGKIDKKVIRAELAKK" misc_feature complement(970958..972574) /locus_tag="Deba_0860" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature complement(970967..972562) /locus_tag="Deba_0860" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(972847..974241) /locus_tag="Deba_0861" /db_xref="GeneID:9493312" CDS complement(972847..974241) /locus_tag="Deba_0861" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR002078:IPR011006:IPR 009057; KEGG: gur:Gura_2708 two component, sigma-54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; ATPase AAA; SPTR: A5G514 Putative two component, sigma-54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806825.1" /db_xref="GI:302342296" /db_xref="GeneID:9493312" /translation="MAHVLIIDDDQMFCEMLAHKVELLGHQAAFAHSLAQGLALCQAG GYDVIYLDVRMPDGNGLEWLGRIQASPGRPEVIIMTGAGDPDGAELAIKSGAWDYVKK PSSMQATTLPLARALQYRQEKAAAGQRRALRLEGIVGADPAFAACLDKLAQAAGSEAA VLICGETGTGKELFARAIHENSARHGGSFVVVDCSVLPQNLVESILFGHEKGAFTGAS EARRGLIAQANGGTLFLDEVGELSPALQRSFLRVLQERRFRPLGAARESSSDFRLLAA TNRDLEAMAAGGAFREDLLFRLRTLVIDLPPLRRRGKDIASLVSHHLELLCRRYGQGA KGFSPEFMAALTAHAWPGNVRELVSALEQALAAAGPAPTLHVHHLPQKLRIALARASA HPLEAAPRQPEEPAQAMGLPPLKQYRQAMDRQYLQELLRVCQGDMGRAVAVSGLSRSR LYALLKQLGLARQD" misc_feature complement(972850..974241) /locus_tag="Deba_0861" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature complement(973891..974229) /locus_tag="Deba_0861" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(973933..973938,973945..973947, 974002..974004,974062..974064,974086..974088, 974215..974220)) /locus_tag="Deba_0861" /note="active site" /db_xref="CDD:29071" misc_feature complement(974086..974088) /locus_tag="Deba_0861" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(974062..974070,974074..974079)) /locus_tag="Deba_0861" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(973930..973938) /locus_tag="Deba_0861" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(973321..973818) /locus_tag="Deba_0861" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(973726..973749) /locus_tag="Deba_0861" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(973408..973410,973534..973536, 973723..973746)) /locus_tag="Deba_0861" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(973531..973548) /locus_tag="Deba_0861" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(973351..973353) /locus_tag="Deba_0861" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(974246..976549) /locus_tag="Deba_0862" /db_xref="GeneID:9493313" CDS complement(974246..976549) /locus_tag="Deba_0862" /note="COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000700:IPR011006:IPR009082:IPR004358:I PR013767:IPR000169; KEGG: sfu:Sfum_2401 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: A0LKY0 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, nitrogen specific, NtrB" /protein_id="YP_003806826.1" /db_xref="GI:302342297" /db_xref="GeneID:9493313" /translation="MSRAGAPVTEQWDEGLFRRLFQEAALGMALVDVSGRYLLANDHC LRLLGYSQQELRGLTFRELTHRDDLAASERYYQRLLAGRQSFVQVEKRYIKRDGGFVW LLVKNTMLRDRRGDPQYILTFLQDITQQKLAEEALTESEQRYRTIFETAGTAMVIYRQ DTTITLANSEFCKLCGCAKEDTEGKRSWTEFIAPNDVERMLGYHRVRRQRPDVTPRSY EAAVIDNSGRPHDVIITVGPIPESNLTVASLLDIAGLKKAEEERALLATAIEQAAEGL MITDNDSVIQYINPAFERMSGFDAAELIGKSIRQLGRDELGMGPPKEMWRVLAKGGAW SGRYANVRKDGRTIEVETTVSPVRAAGGQGVTNYLAQQRDRTKEAQLERQLRQSQKME AIGTLAGGIAHDFNNILASIIGYAEIALHDYLGPEHQAGRLLGQVIKACGRARDLADQ ILTFSRQTERQLAPVALEAVVDEALKLLRASLPANIVIERQSDGSGGLVVADSTQLHQ VILNLGANAAHAMGPKGGTLGVRLARVELDAEQAARLGGLVAGEHMELCLSDSGTGMD EATIERIFEPYFTTKGPGGGTGLGLALVHGIVTGLGGAVRVESALGQGSRFFVYLPLA QGHAAGQAAEDGPAPRGRERLMLVDDEAPVAAMAAEMLGNLGYDVRAHTDSRQAAQTI AAGQVDFDLLITDQTMPGLSGLDLARLVKALRPETPVLICSGYADFRGGEEESAEAAR LCRLLRKPLTRLELARAVRQALDRREA" misc_feature complement(976139..976510) /locus_tag="Deba_0862" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(976169..976471) /locus_tag="Deba_0862" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(976256..976258,976271..976273, 976352..976363,976400..976402,976418..976420, 976430..976432)) /locus_tag="Deba_0862" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(976229..976231,976235..976237, 976322..976327,976334..976336,976358..976360, 976370..976372)) /locus_tag="Deba_0862" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(975767..976132) /locus_tag="Deba_0862" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(975935..976126) /locus_tag="Deba_0862" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(974261..975748) /locus_tag="Deba_0862" /note="histidine kinase; Provisional; Region: PRK13557" /db_xref="CDD:184141" misc_feature complement(975428..975736) /locus_tag="Deba_0862" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(975515..975517,975530..975532, 975608..975619,975656..975658,975674..975676, 975686..975688)) /locus_tag="Deba_0862" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(975488..975490,975494..975496, 975578..975583,975590..975592,975614..975616, 975626..975628)) /locus_tag="Deba_0862" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(975182..975379) /locus_tag="Deba_0862" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(975197..975199,975209..975211, 975218..975220,975230..975232,975239..975241, 975251..975253,975305..975307,975314..975316, 975326..975328,975335..975337,975347..975349, 975359..975361)) /locus_tag="Deba_0862" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(975341..975343) /locus_tag="Deba_0862" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(974687..975034) /locus_tag="Deba_0862" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(974699..974701,974705..974710, 974723..974725,974729..974731,974777..974788, 974855..974860,974864..974866,974870..974872, 974876..974878,974993..974995,975002..975004, 975014..975016)) /locus_tag="Deba_0862" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(975002..975004) /locus_tag="Deba_0862" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(974780..974782,974786..974788, 974858..974860,974864..974866)) /locus_tag="Deba_0862" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(974264..974614) /locus_tag="Deba_0862" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(974306..974311,974381..974383, 974441..974443,974465..974467,974600..974605)) /locus_tag="Deba_0862" /note="active site" /db_xref="CDD:29071" misc_feature complement(974465..974467) /locus_tag="Deba_0862" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(974441..974449,974453..974458)) /locus_tag="Deba_0862" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(974303..974311) /locus_tag="Deba_0862" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(976546..976827) /locus_tag="Deba_0863" /db_xref="GeneID:9493314" CDS complement(976546..976827) /locus_tag="Deba_0863" /note="KEGG: drt:Dret_1754 hypothetical protein; SPTR: C8X3P1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806827.1" /db_xref="GI:302342298" /db_xref="GeneID:9493314" /translation="MAETIDEITIAYEEDGEVLIEELEKIVLSRGAWTTILFRFREKD RKTGQFGPPKAGLRRYQKYNGAFRKKDAINISDKMAPALVEQLRAWFEL" gene complement(976926..978287) /locus_tag="Deba_0864" /db_xref="GeneID:9493315" CDS complement(976926..978287) /locus_tag="Deba_0864" /note="KEGG: dal:Dalk_4108 hypothetical protein; SPTR: B8FM60 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806828.1" /db_xref="GI:302342299" /db_xref="GeneID:9493315" /translation="MPSFAQTHSRVTTYYLLEESRDLRQSLLKAARWKKTVLIVPALA SEFTHPENRPVFVNIVSELASANYLAHVIFGLDQASEQDVRELTGILKKAGLQNYVLQ WNDGEAFASVYHEMQENGFNLDQRGKGRNVFMGFGVAMALGATTVGLLDADIRTFKRR QLDRLFFPCLVHNYPFAKAFYARWNEQRLFGRVKRLLLDPLLLALKRKFSDSSEDKML RLVDFLLSFDYQLSGEVVFDAWMLKKMRYALDWGVEIFTLIEVFRKAAQVAQVEFTRH GFDHKHQRVSTADPSGGLHRMSLDIINTLLHALIVEEGLEVGEEFFRDLALTYQSIAE DIIKKYSDNAEFNQINYDRDAEERMVNQVLAGAIVQAADRLTAPAHLAEKMLRLTASH PEFKPFIDAGLQQTILAVEEKIRDQSLDLRYLPSWERILWKMPEVSGLIVDAVEADKA RFR" misc_feature complement(977370..>977969) /locus_tag="Deba_0864" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" gene complement(978324..979553) /locus_tag="Deba_0865" /db_xref="GeneID:9493316" CDS complement(978324..979553) /locus_tag="Deba_0865" /EC_number="2.7.7.7" /note="COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR017963:IPR017961:IPR001126; KEGG: pca:Pcar_3129 damage-inducible protein DinP; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: Q39ZU3 Damage-inducible protein DinP; manually curated; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_003806829.1" /db_xref="GI:302342300" /db_xref="GeneID:9493316" /translation="MARFKKKGNSATNFTATPSRLIAHVDMDAFYAAVEAMDQPELAG LPLVVGGLGPRSVVSAASYEARAFGVRSAMPMGQALRLCPTAAVRPVRMARYRQVSGQ VMDALAAFSPLVEQISVDEAFIDLSGCRRLWGPPRQAGLAIKAAVSRACGLSCSVGLA PARFLAKIASERDKPDGLTVVEDLEGFLRTIQLREVSGVGKKAQERLAALGLKRLVDL RPLRPELLERLFGSGGARMARLAWGDDPTPIEPRRPVKSLSHELTLDRDTADRELLAA LLLDLGHKVARRLRDKGLAGQSLTLKLKTSDMAIVTRSTALGAPTNDGGRIVATARGL LAAYQGRGPFRLIGVGLGRLAPAGAGQGELFDAGRQKALARAEDEVRRRFGERAIQRA AQTPSLDHDEKLVHNDE" misc_feature complement(978492..979484) /locus_tag="Deba_0865" /note="DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa; cd03586" /db_xref="CDD:176459" misc_feature complement(order(979032..979034,979194..979196, 979356..979358,979365..979367,979374..979379, 979461..979469,979473..979478)) /locus_tag="Deba_0865" /note="active site" /db_xref="CDD:176459" misc_feature complement(978459..979475) /locus_tag="Deba_0865" /note="DNA polymerase IV; Validated; Region: PRK02406" /db_xref="CDD:179421" misc_feature complement(order(978495..978497,978504..978506, 978516..978521,978606..978608,978612..978623, 978690..978692,978765..978788,978855..978860, 978945..978965,979053..979055,979191..979196, 979200..979202,979329..979331,979401..979403)) /locus_tag="Deba_0865" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176459" gene 979591..979809 /locus_tag="Deba_0866" /db_xref="GeneID:9493317" CDS 979591..979809 /locus_tag="Deba_0866" /note="KEGG: afw:Anae109_1784 hypothetical protein; SPTR: A7HB91 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806830.1" /db_xref="GI:302342301" /db_xref="GeneID:9493317" /translation="MSQPKDANPRNLAGGRNVQCPHYVFCLDIAAANMWPQFTCDYCF YRKTRQDTRIEELDLCSPGWEDIWGGSG" gene complement(979832..980632) /locus_tag="Deba_0867" /db_xref="GeneID:9493318" CDS complement(979832..980632) /locus_tag="Deba_0867" /note="COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760:IPR020583:IPR020550; KEGG: mxa:MXAN_1914 inositol-1-monophosphatase; PFAM: inositol monophosphatase; SPTR: Q1DB15 inositol-1-monophosphatase; PFAM: inositol monophosphatase family" /codon_start=1 /transl_table=11 /product="inositol monophosphatase" /protein_id="YP_003806831.1" /db_xref="GI:302342302" /db_xref="GeneID:9493318" /translation="MREQLLETAVAAARAGARLLRERWSAPRTISRKERYDFVTDADL ASQRAVLAVIEERHPDHAILAEEERGDPATAARTPGVLWVVDPLDGTTNFIHGFPMAA VSVAAVAGGRPLAGAIIDVVHGEEFKAARGLGAFVDDRPMRVADIEDRSQCLLLTGFP FRDRGRLDPYLELFKELFGQSSGVRRAGSAALDLAYVAAGRAQGFWEMGLKPWDVAAG IVLVEEAGGVVSDFAGGGEALWRGDVVAAAPGVHGWMQQACERYFPLG" misc_feature complement(979892..980554) /locus_tag="Deba_0867" /note="IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be...; Region: IMPase; cd01639" /db_xref="CDD:30137" misc_feature complement(order(979991..979996,980360..980377, 980432..980437,980504..980506,980522..980524, 980534..980536)) /locus_tag="Deba_0867" /note="active site" /db_xref="CDD:30137" misc_feature complement(order(980024..980035,980045..980047, 980069..980089,980099..980101,980108..980113, 980120..980122,980129..980134,980156..980161, 980165..980167,980171..980179,980333..980350, 980354..980359,980519..980521,980525..980527)) /locus_tag="Deba_0867" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:30137" gene 980763..982040 /locus_tag="Deba_0868" /db_xref="GeneID:9493319" CDS 980763..982040 /locus_tag="Deba_0868" /note="COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR010206:IPR002646; KEGG: dps:DP0573 polyA polymerase; PFAM: polynucleotide adenylyltransferase region; SPTR: C8QWW9 polynucleotide adenylyltransferase; TIGRFAM: poly(A) polymerase; PFAM: poly A polymerase head domain; TIGRFAM: poly(A) polymerase" /codon_start=1 /transl_table=11 /product="poly(A) polymerase" /protein_id="YP_003806832.1" /db_xref="GI:302342303" /db_xref="GeneID:9493319" /translation="MSTQADQQPENYPLPEPRIVPRPEHAISRDNIDPDALKVLYRLH RAGFTAYLVGGGVRDLLLGKKPKDFDVGTDARPGQVRNLFRNSRVIGRRFRLVQVFFQ RNKIVEVSTFRRASDPDEDLVLQANNTFGSPAEDALRRDLTINAMFYNIADFSIVDYV GGMDDLKAGLIRAVGDPKIRFHRDPVRVMRAVRHAARTGFQLTSETRQAVEDFRCELA VCPSSRIRDELMRDLAGGAAAPWLELAHQTKILYSLLPGLEKYYGQPDSHARAQAACN LAAIDQAVAAGAPPDDAVIVCAFLWPALEALAASQPFEEGRAGRGQWIGFVRDALPEL TAPVAFAKRVIERACQLAAVMSFPRFAEPGQRLPKRVTEKGYFPMAQDLATVIGLRLE PGDENDAPQQARAKRRRPRRRRKRPGGNGSQAA" misc_feature 980817..981956 /locus_tag="Deba_0868" /note="poly(A) polymerase; Region: pcnB; TIGR01942" /db_xref="CDD:130997" misc_feature 980859..981266 /locus_tag="Deba_0868" /note="Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398" /db_xref="CDD:143388" misc_feature order(980922..980927,980934..980939,980964..980966, 980970..980972,981048..981050,981084..981086, 981099..981101,981177..981188,981195..981197) /locus_tag="Deba_0868" /note="active site" /db_xref="CDD:143388" misc_feature order(980922..980927,980934..980936,980964..980966, 980970..980972,981177..981185,981195..981197) /locus_tag="Deba_0868" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143388" misc_feature order(980964..980966,980970..980972,981084..981086) /locus_tag="Deba_0868" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143388" misc_feature 981357..981545 /locus_tag="Deba_0868" /note="Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627" /db_xref="CDD:193105" gene 982151..983209 /locus_tag="Deba_0869" /db_xref="GeneID:9493320" CDS 982151..983209 /locus_tag="Deba_0869" /note="InterPro IPR017896:IPR001450:IPR017900; KEGG: dat:HRM2_45120 iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C0QF67 Iron-sulfur cluster binding protein; PFAM: 4Fe-4S binding domain" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_003806833.1" /db_xref="GI:302342304" /db_xref="GeneID:9493320" /translation="MDIYRKLQEHLDKLPGGFPATESGVELRILKKLFSPEQAELALH TQLMPEPAAAIAQRAGLDEAEASARLHEMARQGLLFSVEMKGRPPLYMAAQYVVGIWE YQLNRLDEEFVRDMQAYMPNLFDMEVWKKAPQLRVIPIGASVAAGNAVMAYEQAEEMI RSQKKIALAPCICRREHKLVGHHCDKPEEVCLSFGTGAYYYIQNGLGREITQDEALEV LKIADKAGLVLQPGAAQKSDNICCCCGDCCGVLLAMKRHPKPREIAASSFEVAYDAEA CVMCGLCEDRCQMDVFSPGDDAMILNMDRCIGCGLCVTTCPSEALKLVRRPDDIITPL PANIVETSINMLKARGLM" misc_feature <982967..>983128 /locus_tag="Deba_0869" /note="MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]; Region: COG1149" /db_xref="CDD:31343" misc_feature 983045..983116 /locus_tag="Deba_0869" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene 983251..983763 /locus_tag="Deba_0870" /db_xref="GeneID:9493321" CDS 983251..983763 /locus_tag="Deba_0870" /EC_number="2.5.1.17" /note="COGs: COG2109 ATP:corrinoid adenosyltransferase; InterPro IPR003724; KEGG: etr:ETAE_1548 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: B2Q3M2 Putative uncharacterized protein; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase" /codon_start=1 /transl_table=11 /product="cob(I)alamin adenosyltransferase" /protein_id="YP_003806834.1" /db_xref="GI:302342305" /db_xref="GeneID:9493321" /translation="MAGRVLINTGEGKGKTTAAIGTALRALGHGQRVVVFQFMKGQID SGEVAMLERLGAAIHRLGKGFSWTKESWDEDRQLALEGWREAANALQDPTIGLVVLDE INYVIGYGLLDPQTIAQAIQNRPPKMNVILTGRGLHKPLDQLADTITEMLPRKHAFNA GVKAAKGVEF" misc_feature 983257..983724 /locus_tag="Deba_0870" /note="ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a...; Region: CobA_CobO_BtuR; cd00561" /db_xref="CDD:29983" misc_feature 983278..983298 /locus_tag="Deba_0870" /note="Walker A motif; other site" /db_xref="CDD:29983" misc_feature order(983287..983289,983299..983301,983311..983316, 983320..983337,983380..983382,983386..983391, 983395..983400,983635..983637,983674..983679, 983683..983706,983710..983715,983719..983721) /locus_tag="Deba_0870" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29983" misc_feature order(983287..983289,983293..983301,983323..983325, 983554..983556) /locus_tag="Deba_0870" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29983" misc_feature order(983368..983370,983377..983379,983449..983451, 983563..983565,983575..983577,983653..983655, 983722..983724) /locus_tag="Deba_0870" /note="hydroxycobalamin binding site [chemical binding]; other site" /db_xref="CDD:29983" misc_feature 983539..983553 /locus_tag="Deba_0870" /note="Walker B motif; other site" /db_xref="CDD:29983" gene 983965..984654 /locus_tag="Deba_0871" /db_xref="GeneID:9493322" CDS 983965..984654 /locus_tag="Deba_0871" /note="KEGG: mpa:MAP1642 hypothetical protein; SPTR: D1C8K5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806835.1" /db_xref="GI:302342306" /db_xref="GeneID:9493322" /translation="MESRELSWLGKQGAIICFGGKRYCPVLLVLMGLILWYLYVTLFK NYADRSLVAGDEPILNVIEHVVTFATFLTALYIGYIETARDWLASLPKKVDVEFLHDG DVVMECKDAYLAGEADVRAWAQQIGRQMAFGEDLKFLPNIQIHQPRPELFAKKAVLKF RATVVLTALPGIFKNDAAGRSEQNANVKKPKTVSWICQNERDIVQVVIMPDGTKISWD DFTTTSNDNKK" gene 984851..985876 /locus_tag="Deba_0872" /db_xref="GeneID:9493323" CDS 984851..985876 /locus_tag="Deba_0872" /note="KEGG: dal:Dalk_2588 hypothetical protein; SPTR: B8FIP0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806836.1" /db_xref="GI:302342307" /db_xref="GeneID:9493323" /translation="MPIPGNLLTTAMAVMPHQDVDRALQMALSLDIPFWPQLPHVSYY EDMYVQASEHFPGIVLDMQNQRLSFDSAKFMEELEQALANFDRPEYFDISPRYSVVYH KFLDLDLSDRPAIRGQLEGPISFGFNVKDENDRPILFDDTVRPLMFEIMSQRVNAQLR RLKNKNANAFMYVDEPGLQFLFSALSGYDDVKAKADMEAFFAAIERPRGVHLCGNPDW DFLLGLDIDILSMDVFTNGEIFGSYAKSIARFLDRGGVLSWGLVPTNFEPFSLESLPS LEARLLSVWDHLTGAGVDRDFMLSRSLISPATCCLVNNDGALTVERAFGVVNELSRRL RERFKLA" misc_feature 984872..985858 /locus_tag="Deba_0872" /note="The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine...; Region: URO-D_CIMS_like; cl00464" /db_xref="CDD:193829" gene complement(985962..986342) /locus_tag="Deba_0873" /db_xref="GeneID:9493324" CDS complement(985962..986342) /locus_tag="Deba_0873" /note="COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR015867:IPR011322; KEGG: nis:NIS_0493 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Q1PX04 Strongly similar to nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_003806837.1" /db_xref="GI:302342308" /db_xref="GeneID:9493324" /translation="MLKKIEAIIREDRFNDVKEALRGLGIVGMNMFEIRGHGRQGGIE LAGRSGTFQVDMLTKVQINIVLSEHNVDEVVQTIVNAARTGETGDGLIFIHPIEEVVR IRTGERGREAVMYPGDIDEKKGQK" misc_feature complement(986025..986330) /locus_tag="Deba_0873" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene complement(986362..987585) /locus_tag="Deba_0874" /db_xref="GeneID:9493325" CDS complement(986362..987585) /locus_tag="Deba_0874" /note="COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: csc:Csac_1344 ammonium transporter; PFAM: ammonium transporter; SPTR: A4XJ61 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="YP_003806838.1" /db_xref="GI:302342309" /db_xref="GeneID:9493325" /translation="MAQINAGDTAWLMVCCSLVLMMTPALAFFYGGMVRKKNILSTLT LSYVFMALIGVQWVLYGYSLAFGPDIGGIIGGLEYLGLAGVGAAPDPNYSANVPALLF AAFQMMFAVITPALITGGFVERIRFKSFLLFSIIWSTIVYDPLCHWVWGVGGWLRQMG VLDFAGGTVVHIAAGFSALAFAMAVGPRKGFGRTPMEPHNIPYTVLGTGLLWVGWFGF NGGSALAADGVAVHALVATNTSGAAAALVWMLLSWLDGRPSTLGLATGMVVGLAAVTP ASGYVTPMAAMFIGAVAAPISYYAIRFRARRGLDESLDVWACHGMASTWGMLATGLFA STTVNPAGANGLFHGNPGLFATQLWAVVVTMAYAFVVTYVLVKVLDWSIGMRVSEMEE EVGLDVSAHGERAYS" misc_feature complement(986365..987576) /locus_tag="Deba_0874" /note="Ammonium Transporter Family; Region: Ammonium_transp; cl03012" /db_xref="CDD:194508" gene complement(988071..988454) /locus_tag="Deba_0875" /db_xref="GeneID:9493326" CDS complement(988071..988454) /locus_tag="Deba_0875" /note="COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR015867:IPR011322; KEGG: sdl:Sdel_0104 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Q1PX04 Strongly similar to nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_003806839.1" /db_xref="GI:302342310" /db_xref="GeneID:9493326" /translation="MLKKIEAIIREDKINDVKDALRNLGIVGMNTFEIRGHGRQGGIE LSGRSGTFQVDMLPKIQVNIVLSEGNVDEVIKTILGAARTGEAGDGLIFIYPVEEVVR IRTGERGRDAVMYPGDIDEKKGKKK" misc_feature complement(988137..988442) /locus_tag="Deba_0875" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene complement(988473..989693) /locus_tag="Deba_0876" /db_xref="GeneID:9493327" CDS complement(988473..989693) /locus_tag="Deba_0876" /note="COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: mpd:MCP_0587 ammonium transporter; PFAM: ammonium transporter; SPTR: A4XJ61 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="YP_003806840.1" /db_xref="GI:302342311" /db_xref="GeneID:9493327" /translation="MENAINAGDTAWILVSSALVLLMTPALGFFYGGMVRKKNILSTL NLSFIMVGLISVQWVLFGYSLAFGDDVGGMGLIGGLNYLGFSGVTGAPLAGQTIPHLI FAAFQMMFAIITPALITGAFVDRIKFSTFLVFSLIWATIVYDPLCHWVWGGGGWIMAL GALDFAGGTVVHIAAGFSALAFALAIGPRKGYPGVLMEPHNIPYTVLGAALLWVGWFG FNAGSALGANGAAANAFVTTNTAAAAAALVWMLLAWKDGKPSVLGIATGAVVGLVAIT PAAGFVTPGAALIIGAVAAPVSYYAMRLRHKIGFDESLDVWACHGMAGTWGALATGLF ASPEIGAGTGLFYGNPAQLWIQFISVVVTIGYVFVVTFVLCKILGAVMGLRVSDKAEE VGLDLSEHGERAYS" misc_feature complement(988476..989681) /locus_tag="Deba_0876" /note="Ammonium Transporter Family; Region: Ammonium_transp; cl03012" /db_xref="CDD:194508" gene 990042..991295 /locus_tag="Deba_0877" /db_xref="GeneID:9493328" CDS 990042..991295 /locus_tag="Deba_0877" /EC_number="6.1.1.21" /note="COGs: COG0124 Histidyl-tRNA synthetase; InterProIPR015807:IPR006195:IPR004154:IPR002314:IPR 004516; KEGG: ppd:Ppro_1381 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; PRIAM: Histidine--tRNA ligase; SPTR: A1ANS7 Histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; manually curated; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="histidyl-tRNA synthetase" /protein_id="YP_003806841.1" /db_xref="GI:302342312" /db_xref="GeneID:9493328" /translation="MSVQAVRGMKDVMAPEVGKWQFIEATARRVFDCFGFDEIKTPVL EKTELFVRSIGETTDIVEKEMYTFADRGGDMLSLRPEATAGVLRAYVENKLHAQPGPH RLFTIGPMFRRERPQKGRLRQFHQLNCEVLGDEGPLVDAELLVMLDHLLKELGLRNVE IVLNSLGCPECRPAFRQALSAFLRGRAGELCPDCQRRLERNPLRVLDCKAEGCRQAAQ GAPSIAEHLCPACADHLAQVRGMLAAAGVQYKIDPKLVRGLDYYVRTTFEALAGDLGA QNAVAGGGRYDGLIQALGGPAEGGVGFGCGLERLALLLADDPRWRREPALFVAALGAG PRAWAFELTQRLRRAGLRVEMMSQDKSLKAQMRRADKLGARRALIVGEQELADGVAQL KDMAAAGRQEPLPLDGAFEALRKLI" misc_feature 990042..991292 /locus_tag="Deba_0877" /note="histidyl-tRNA synthetase; Reviewed; Region: hisS; PRK00037" /db_xref="CDD:178812" misc_feature 990087..990983 /locus_tag="Deba_0877" /note="Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: HisRS-like_core; cd00773" /db_xref="CDD:73226" misc_feature order(990102..990104,990138..990140,990153..990173, 990243..990248,990282..990284,990288..990290, 990303..990308,990315..990320,990405..990410, 990429..990431,990453..990455,990465..990467, 990474..990476,990891..990893,990945..990950) /locus_tag="Deba_0877" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73226" misc_feature 990147..990173 /locus_tag="Deba_0877" /note="motif 1; other site" /db_xref="CDD:73226" misc_feature order(990282..990284,990288..990290,990375..990377, 990381..990383,990402..990404,990411..990413, 990417..990419,990429..990431,990810..990812, 990816..990818,990822..990827,990876..990878, 990891..990893,990948..990950,990957..990959, 990966..990968) /locus_tag="Deba_0877" /note="active site" /db_xref="CDD:73226" misc_feature 990372..990386 /locus_tag="Deba_0877" /note="motif 2; other site" /db_xref="CDD:73226" misc_feature order(990945..990959,990966..990968) /locus_tag="Deba_0877" /note="motif 3; other site" /db_xref="CDD:73226" misc_feature 991008..991283 /locus_tag="Deba_0877" /note="HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859" /db_xref="CDD:29799" misc_feature order(991032..991037,991140..991142,991158..991160, 991182..991184,991212..991214,991218..991220) /locus_tag="Deba_0877" /note="anticodon binding site; other site" /db_xref="CDD:29799" gene 991353..993140 /locus_tag="Deba_0878" /db_xref="GeneID:9493329" CDS 991353..993140 /locus_tag="Deba_0878" /note="COGs: COG0173 Aspartyl-tRNA synthetase; InterProIPR004524:IPR006195:IPR012340:IPR016027:IPR 002312:IPR004365:IPR004364:IPR004115; KEGG: dps:DP0570 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: Q1NIK4 Aspartyl-tRNA synthetase bacterial/mitochondrial type; TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type" /codon_start=1 /transl_table=11 /product="aspartyl-tRNA synthetase" /protein_id="YP_003806842.1" /db_xref="GI:302342313" /db_xref="GeneID:9493329" /translation="MSQRFITDLKRTHTCGQLTAADVGKQVVLMGWCQRRRDHGGLIF VDLRDRDGLTQVVFNPEVSGGSHSLAHAIRNEYCLALQGKVDLRPEGMQNDKLGTGAV EVYVSDFEILNASKTPPFMLEDWIDVGEAVRLKYRYLDLRRQVVFRNLKLRHQAAQAA RGYLNDQGFLEVETPFLTKSTPEGARDYLVPSRVQRGRFYALPQSPQLFKQLLMVGGV ERYYQIVKCFRDEDLRADRQPEFTQVDLEMSFVDENDVMDLTEGLVGAILKATRGVEL GPVPRLSYAQAMERFGLDAPDIRFGLELTDLGELMQKTQFKVFRGAIDGGGVVKAING KGMGGLSRKDLDDLTAFVADYGAKGLAWVKLKDGGQWQSPIAKFIEPEVQAAINERMA AEDGDILFFGADKKPVVSESLGRLRLELSRRFQLTSPDDLRFCWVTDFPMFEYDPQEK RYNAMHHPFTSPKSEFEDKMGSDPEACLARAYDLVLNGSEVGGGSIRIHRPETQAKVF GALNIDDEQAREKFGFLLDALAFGAPPHGGLALGFDRLVAILAGQGSIREVIAFPKTQ KASCPMTDAPSTVDRNQLLELGLRVEKID" misc_feature 991374..993131 /locus_tag="Deba_0878" /note="aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476" /db_xref="CDD:179042" misc_feature 991383..991784 /locus_tag="Deba_0878" /note="EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317" /db_xref="CDD:58587" misc_feature order(991383..991385,991392..991394,991446..991448, 991500..991502,991689..991691,991695..991700) /locus_tag="Deba_0878" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58587" misc_feature order(991455..991457,991461..991469,991482..991484, 991515..991517,991572..991574,991614..991616, 991632..991634,991659..991661,991707..991709) /locus_tag="Deba_0878" /note="anticodon binding site; other site" /db_xref="CDD:58587" misc_feature 991800..>992234 /locus_tag="Deba_0878" /note="Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the...; Region: AspRS_core; cd00777" /db_xref="CDD:73228" misc_feature order(991809..991817,991824..991826,991833..991838, 991845..991847,991854..991865,991869..991889, 991908..991910,991917..991931,991941..991952, 991995..992000,992007..992012,992028..992030, 992040..992042,992070..992072,992100..992102, 992115..992117) /locus_tag="Deba_0878" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:73228" misc_feature 991875..991889 /locus_tag="Deba_0878" /note="motif 1; other site" /db_xref="CDD:73228" misc_feature order(991899..991907,991965..991967,991971..991973, 991980..991982,992037..992039,992043..992045, 992058..992066,992073..992075,992079..992081) /locus_tag="Deba_0878" /note="active site" /db_xref="CDD:73228" misc_feature 992034..992045 /locus_tag="Deba_0878" /note="motif 2; other site" /db_xref="CDD:73228" misc_feature 992307..992579 /locus_tag="Deba_0878" /note="GAD domain; Region: GAD; pfam02938" /db_xref="CDD:145868" misc_feature <992646..993053 /locus_tag="Deba_0878" /note="Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the...; Region: AspRS_core; cd00777" /db_xref="CDD:73228" misc_feature 992976..992987 /locus_tag="Deba_0878" /note="motif 3; other site" /db_xref="CDD:73228" gene 993334..993780 /locus_tag="Deba_0879" /db_xref="GeneID:9493330" CDS 993334..993780 /locus_tag="Deba_0879" /note="InterPro IPR018392; KEGG: tgr:Tgr7_2244 hypothetical protein; PFAM: peptidoglycan-binding lysin domain; SPTR: C0GS09 Putative uncharacterized protein; PFAM: LysM domain" /codon_start=1 /transl_table=11 /product="peptidoglycan-binding lysin domain protein" /protein_id="YP_003806843.1" /db_xref="GI:302342314" /db_xref="GeneID:9493330" /translation="MKKVLVKFLPLVVAVIALGMLSGCASICGVEPEAPAPPPVKKFE GVPAPVTDKPAPAPELPTTYTVEKCDDLWSISAKPQIYGDALLWPLLVDANSDKIKNP NKLSVGMVLSIPRDVSDADKTAARAKAAKFPKYVPPAGAKRYCPPK" misc_feature 993517..993675 /locus_tag="Deba_0879" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature order(993523..993525,993532..993534,993541..993543, 993556..993558,993565..993567) /locus_tag="Deba_0879" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" gene 994031..994258 /locus_tag="Deba_0880" /db_xref="GeneID:9493331" CDS 994031..994258 /locus_tag="Deba_0880" /note="COGs: COG4770 Acetyl/propionyl-CoA carboxylase subunit alpha; InterPro IPR000089:IPR011053:IPR001882; KEGG: hoh:Hoch_6688 biotin/lipoyl attachment domain-containing protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: D0LT17 Biotin/lipoyl attachment domain-containing protein; manually curated; PFAM: Biotin-requiring enzyme" /codon_start=1 /transl_table=11 /product="biotin/lipoyl attachment domain-containing protein" /protein_id="YP_003806844.1" /db_xref="GI:302342315" /db_xref="GeneID:9493331" /translation="MGGNKLAEVRAPMGGKVIKIAVKVGDKINADDEVVVLEAMKMEM PILSEEGGTVAEIKIEAGQTVEADQVLIVLS" misc_feature 994052..994252 /locus_tag="Deba_0880" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature order(994121..994123,994148..994156,994175..994177) /locus_tag="Deba_0880" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature 994151..994153 /locus_tag="Deba_0880" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene 994410..995978 /locus_tag="Deba_0881" /db_xref="GeneID:9493332" CDS 994410..995978 /locus_tag="Deba_0881" /EC_number="6.4.1.3" /note="COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR011762:IPR011763:IPR000438:IPR000022; KEGG: pdi:BDI_0075 propionyl-CoA carboxylase beta chain; PFAM: carboxyl transferase; SPTR: C1SKV2 Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta); PFAM: carboxyl transferase domain" /codon_start=1 /transl_table=11 /product="carboxyl transferase" /protein_id="YP_003806845.1" /db_xref="GI:302342316" /db_xref="GeneID:9493332" /translation="MTNSEAPTTKSKLEELERRNQEALLGGGEERIKAQHAKGKLTAR ERIDQLLDEGTFQEFDRFVVHRCHDFDMDKQKIPGDGVVTGFGKIDGRPVFLFSQDFT VFGGSLSGPFGEKVCKIMDLAVKAGAPVIGLNDSGGARIQEGVVSLASYGEIFRRNVL SSGVVPQISAIMGPCAGGAVYSPAITDFIFMVDQNSYMHITGPQVIKTVTGEDVTSET VGGAKVHNTKSGVAQFMAKDGKECLAQVRQLLSYLPSNWEQKPPYLATGDDPRRTCPE LDQIIPDNPKSPYNMKQLIKTVVDQGTFFEAAKHWAKNMITAFARMGGNAVGIVANNP MHMAGCLDIDASRKCARFVRFCDAFNIPVVTFVDVPGFLPGVQQEYGGIITHGSKVIY AYCEATVPLITIITRKAYGGAYDVMGSKHHGADVNFAFPTAEIAVMGPEGAVNIVFRK QLNDATDKAAAYAELVADYRKNIASPYRAAELGYIDEIIMPHSTRAKVIQALEALKGK RTFRPVRRHGNVPL" misc_feature 994443..995975 /locus_tag="Deba_0881" /note="methylmalonyl-CoA decarboxylase alpha subunit; Region: mmdA; TIGR01117" /db_xref="CDD:130187" misc_feature 994527..995051 /locus_tag="Deba_0881" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" misc_feature <995262..995876 /locus_tag="Deba_0881" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 995990..997651 /locus_tag="Deba_0882" /db_xref="GeneID:9493333" CDS 995990..997651 /locus_tag="Deba_0882" /EC_number="5.4.99.2" /note="COGs: COG1884 methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098:IPR014348:IPR016176:IPR006099; KEGG: tex:Teth514_1855 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; PRIAM: methylmalonyl-CoA mutase; SPTR: C7IS99 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA mutase, large subunit" /protein_id="YP_003806846.1" /db_xref="GI:302342317" /db_xref="GeneID:9493333" /translation="MSGQNFDESLRKWQAGVDKLLAKRPERKAAFHTISGLPIDRLYL PAAPDDDYMEKLGLPGEFPYTRGVQPTMYRGQLWTMRQYAGFATAAESNKRYRYLLGQ GQTGLSVAFDLPTQIGYDADHALAHGEVGKVGVSISSLKDMETLFDQIPLDKVSTSMT INSPAAVLLAMYIAVAEKQGVGPAQLRGTIQNDILKEYSSRGTYIFPPRPSMRIITDI FAYCASDVPQWNTISISGYHIREAGSTAVQEVAFTLANGMAYVQAAIDAGLDVDVFGP RLSFFFNAHSDFLEEVAKYRAARRLWAKIMRERFGAKNPRSQMIRFHTQTAGCSLTAK QPKNNIMRVAFQAMSAVLGGTQSLHTNSMDEALCLPTQESVTIALRTQQVIGYETGVT ETIDPLAGSYYVEDLTDRIEAQAAEYIRRIDEMGGSVSAIEQGFIQREIQEAAYKYQK DIESGERVVVGQNKFVTDEEFVGDRLKVDLSVGQAQAQALAALRAGRDNAAVQARLAA LQAAAKGSDNLMPLILDAVRVYATLGEICDTLRGVFGEYQAPMTI" misc_feature 996017..997624 /locus_tag="Deba_0882" /note="Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, isobutyryl-CoA mutase (ICM)-like subfamily; contains archaeal and bacterial proteins similar to the large subunit of Streptomyces cinnamonensis coenzyme B12-dependent ICM. ICM...; Region: MM_CoA_mutase_ICM_like; cd03680" /db_xref="CDD:58155" gene 997665..998066 /locus_tag="Deba_0883" /db_xref="GeneID:9493334" CDS 997665..998066 /locus_tag="Deba_0883" /note="COGs: COG2185 methylmalonyl-CoA mutase C-terminal domain/subunit (cobalamin-binding); InterPro IPR006159:IPR006158; KEGG: pth:PTH_1362 methylmalonyl-CoA mutase C-terminal domain-containing protein; PFAM: cobalamin B12-binding domain protein; SPTR: A5D2I7 methylmalonyl-CoA mutase, C-terminal domain/subunit; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_003806847.1" /db_xref="GI:302342318" /db_xref="GeneID:9493334" /translation="MRKIRVLAAKPGLDGHDRGIKVIAAALRDAGMEVIYTGLRQSPE QIVSAALQEDVDVVGLSVLSGAHDYLFPKIMELMRQKGLDDVLVIGGGIIPEEDVPAM KAVGVSAIFGPGANTGDIVKFIQENVKRRLN" misc_feature 997677..998036 /locus_tag="Deba_0883" /note="methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen...; Region: MM_CoA_mut_B12_BD; cd02071" /db_xref="CDD:30209" misc_feature order(997701..997721,997728..997730,997839..997847, 997851..997859,997941..997943,997995..997997, 998004..998006,998022..998024) /locus_tag="Deba_0883" /note="B12 binding site [chemical binding]; other site" /db_xref="CDD:30209" misc_feature 997710..997712 /locus_tag="Deba_0883" /note="cobalt ligand [ion binding]; other site" /db_xref="CDD:30209" gene 998246..999178 /locus_tag="Deba_0884" /db_xref="GeneID:9493335" CDS 998246..999178 /locus_tag="Deba_0884" /note="KEGG: mpt:Mpe_A0106 hypothetical protein; SPTR: A2SBX9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806848.1" /db_xref="GI:302342319" /db_xref="GeneID:9493335" /translation="MVFFPTLRAAVTRRFFCTIWLVLALTLAWPTPGRAEGANAYLMG GPLSAEPAPIIDREAGVSPRAYGLDGADYLLGQWRDVRQSGDEAAARWLGQSFGRFMD RWGHAPADGSALAGLAPPGWSPPLKPPADLGASEPPGLTLDERPTGGQETLQSSSHLV WSAHGLGRSSQGSGAAPRWPGFAPSDWLAKIGARGDDDQAALYFQELDGDLLAGEAAR GGVVALEYRLGGHFSLAGGAGALQGFGRPGAGHGLLLDDELRRAYFLAAPYRVGEGLL VQPELSLTQGGPSAAPSQRVEDDWLLGVNVQFDF" gene complement(999175..999789) /locus_tag="Deba_0885" /db_xref="GeneID:9493336" CDS complement(999175..999789) /locus_tag="Deba_0885" /EC_number="1.2.7.8" /note="COGs: COG1014 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit gamma; InterPro IPR019752:IPR002869; KEGG: dat:HRM2_33520 IorB3; PFAM: pyruvate/ketoisovalerate oxidoreductase; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: C0QMB0 IorB3; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit beta" /codon_start=1 /transl_table=11 /product="indolepyruvate ferredoxin oxidoreductase" /protein_id="YP_003806849.1" /db_xref="GI:302342320" /db_xref="GeneID:9493336" /translation="MKALRFEPLDIVITGVGGQGNVLASQALGMALVEAGYQVTVGET YGLSQRGGAVMSQVRVTTGQVMGPVIPANGAHAVVSLEPLEALRVLPDFGNPQVLVLT NNRPLLPINVISGEQKYPPLDELRQALGELSGRLHWLAATDEAIALGAPILANVIMLG GLLGTGLLPVDVELVAQALGEFFPPDKMAANRRALARGMALVAG" misc_feature complement(999178..999765) /locus_tag="Deba_0885" /note="Pyruvate ferredoxin/flavodoxin oxidoreductase; Region: POR; cl00546" /db_xref="CDD:193862" gene complement(999786..1001726) /locus_tag="Deba_0886" /db_xref="GeneID:9493337" CDS complement(999786..1001726) /locus_tag="Deba_0886" /EC_number="1.2.7.8" /note="COGs: COG4231 indolepyruvate ferredoxin oxidoreductase alpha and subunit betas; InterPro IPR017896:IPR011766:IPR001450:IPR017900; KEGG: dal:Dalk_2981 indolepyruvate ferredoxin oxidoreductase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: B8FL36 indolepyruvate ferredoxin oxidoreductase; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit alpha" /codon_start=1 /transl_table=11 /product="indolepyruvate ferredoxin oxidoreductase" /protein_id="YP_003806850.1" /db_xref="GI:302342321" /db_xref="GeneID:9493337" /translation="MPDLTKLAAGQTVLLQGNEAIARGALEAGVQFAAAYPGNPSSEI LQCLADSAQSAGIHAEWSTNEKVALESAAAASFCGLRAMASMKQNGVNVAQDFICNLT ISGVGTGGLVLITADDPSGISSTNEQDARFIARLACLPLLEPSTPDECRRMIKFAFEL SEAIQNIVVFRSLSRLSHTRGNVAPGPLPGQKRAPHWRTGQNFITMPVMPKHQIMLDK LAKAGQIMAESPFNPYDGPARPELVIIASGSSWLYASEARQAMGLEDRVGLQKLGGTW PLPEALLLERLAASPAVLFAEEIDPIIEDQVMALYARHAAELGPKRFFGKASGHTPMI GELSPGRLAQAVGRILDLATPTVAPDYLERARQAAARLVPPREFGFCPGCPHRASFWS IKQVLAADGRDGLVSGDIGCYTLGALSTGYRRVNSVHCMGSGLGVGSGLGQLGPQGFD QPVLTVVGDSTFFHSGLPGLINARWNGADFLLCILDNAATAMTGFQPHPATGQTATGR PGGQISLESVLDGLGVPYRITDPYDLAATQQTIYDALLDKGGARALILRRACALVQNK RGGHPYVMSVDQSVCRGEECGCNRFCSRVFRCPGLIFDEAAGKARIDEVVCAGCGVCA QICPAGAIKAELKDQSRKEAAA" misc_feature complement(999831..1001690) /locus_tag="Deba_0886" /note="indolepyruvate ferredoxin oxidoreductase, alpha subunit; Region: IOR_alpha; TIGR03336" /db_xref="CDD:163218" misc_feature complement(1001211..1001678) /locus_tag="Deba_0886" /note="Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034" /db_xref="CDD:132917" misc_feature complement(order(1001319..1001324,1001370..1001372, 1001415..1001417,1001427..1001429,1001436..1001438, 1001487..1001489,1001493..1001495,1001502..1001510, 1001514..1001519,1001541..1001552,1001589..1001591, 1001598..1001600,1001610..1001612,1001628..1001633)) /locus_tag="Deba_0886" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132917" misc_feature complement(order(1001427..1001429,1001436..1001438, 1001487..1001489,1001493..1001495,1001502..1001510, 1001514..1001519,1001541..1001552,1001589..1001594, 1001610..1001612,1001616..1001621,1001628..1001633)) /locus_tag="Deba_0886" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132917" misc_feature complement(order(1001532..1001534,1001616..1001618)) /locus_tag="Deba_0886" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132917" misc_feature complement(order(1001373..1001375,1001610..1001612)) /locus_tag="Deba_0886" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:132917" misc_feature complement(1000080..1000604) /locus_tag="Deba_0886" /note="TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the...; Region: TPP_IOR_alpha; cd02008" /db_xref="CDD:48171" misc_feature complement(order(1000260..1000262,1000266..1000268, 1000344..1000355,1000434..1000436)) /locus_tag="Deba_0886" /note="TPP-binding site; other site" /db_xref="CDD:48171" misc_feature complement(999828..999899) /locus_tag="Deba_0886" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene complement(1001719..1002801) /locus_tag="Deba_0887" /db_xref="GeneID:9493338" CDS complement(1001719..1002801) /locus_tag="Deba_0887" /EC_number="1.12.98.1" /note="COGs: COG1035 Coenzyme F420-reducing hydrogenase subunit beta; InterProIPR017896:IPR001450:IPR007516:IPR007525:IPR 017900; KEGG: dal:Dalk_2982 coenzyme F420 hydrogenase; PFAM: coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Coenzyme F420 hydrogenase; SPTR: B8FL37 Coenzyme F420 hydrogenase; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, subunit beta N-term; Coenzyme F420 hydrogenase/dehydrogenase, subunit beta C terminus" /codon_start=1 /transl_table=11 /product="Coenzyme F420 hydrogenase" /protein_id="YP_003806851.1" /db_xref="GI:302342322" /db_xref="GeneID:9493338" /translation="MPNDPAAPSPQPSLEMLRAQVQDAGLCVACGACVGLCPHLIFLD GRVAAPDACGLIGGRCHDLCPQAIAPGQPAKRRALHAARGQNADEPLGPLLAAFAGRA ADESTRRTAQYGGVVSALLGLALDEGVVGEAVVTKADQRGAPQGVRVRRRDQVLAAAG SRYAAGAGLSALNQALAETASHPLAVVALPCQALAAASMSAHPGYPQAASRLKLVIGL FCTLNLSARGLRALLEQAGVAQPVLRADFPPPPAGVFQVTNAAGMAEIPLEQVHQAVL KGCGLCPDLTAELADVAVGAVEGRPGWNTVLARTPAGLELVELARARGVLELEQLTEA DLAPLAGAARAKRARGLAAWKERDNA" misc_feature complement(1001803..1002741) /locus_tag="Deba_0887" /note="Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]; Region: FrhB; COG1035" /db_xref="CDD:31238" misc_feature complement(1001803..1002252) /locus_tag="Deba_0887" /note="Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; Region: FrhB_FdhB_C; pfam04432" /db_xref="CDD:190987" gene 1003003..1003078 /locus_tag="Deba_R0018" /db_xref="GeneID:9493339" tRNA 1003003..1003078 /locus_tag="Deba_R0018" /product="tRNA-Gly" /db_xref="GeneID:9493339" gene 1003356..1003841 /locus_tag="Deba_0888" /db_xref="GeneID:9493340" CDS 1003356..1003841 /locus_tag="Deba_0888" /note="InterPro IPR003728; KEGG: scl:sce5801 hypothetical protein; PFAM: protein of unknown function DUF150; SPTR: Q1NIJ0 Putative uncharacterized protein; PFAM: Uncharacterised BCR, YhbC family COG0779" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806852.1" /db_xref="GI:302342323" /db_xref="GeneID:9493340" /translation="MAATDANARDELGRRLMELIEPVVRSEGLVLVELQWRPENAGQV LRLFVDRPAGGVTLDDCSLISRQVSDLLDVEDPIGGAYRLEVSSPGLERRLKSAREYV IFAGRMAKLVIRDDGEKSGNRVLHGRLLGLQGDDVLIEIDGRPTATPLAQVVKANLMV E" misc_feature 1003395..1003838 /locus_tag="Deba_0888" /note="ribosome maturation protein RimP; Reviewed; Region: PRK00092" /db_xref="CDD:178857" misc_feature 1003401..>1003697 /locus_tag="Deba_0888" /note="The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members...; Region: Sm_like; cl00259" /db_xref="CDD:193733" misc_feature 1003599..1003838 /locus_tag="Deba_0888" /note="The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members...; Region: Sm_like; cl00259" /db_xref="CDD:193733" misc_feature order(1003677..1003694,1003710..1003712,1003725..1003775) /locus_tag="Deba_0888" /note="Sm1 motif; other site" /db_xref="CDD:99752" misc_feature order(1003683..1003685,1003689..1003694,1003710..1003712, 1003728..1003730,1003746..1003748,1003767..1003769, 1003788..1003796,1003800..1003805,1003809..1003826) /locus_tag="Deba_0888" /note="D3 - B interaction site; other site" /db_xref="CDD:99752" misc_feature order(1003683..1003685,1003689..1003691,1003725..1003727, 1003803..1003805,1003812..1003826) /locus_tag="Deba_0888" /note="D1 - D2 interaction site; other site" /db_xref="CDD:99752" misc_feature order(1003686..1003694,1003752..1003754,1003791..1003808, 1003812..1003826) /locus_tag="Deba_0888" /note="Hfq - Hfq interaction site; other site" /db_xref="CDD:99752" misc_feature order(1003752..1003754,1003758..1003760,1003800..1003802) /locus_tag="Deba_0888" /note="RNA binding pocket [nucleotide binding]; other site" /db_xref="CDD:99752" misc_feature 1003788..1003823 /locus_tag="Deba_0888" /note="Sm2 motif; other site" /db_xref="CDD:99752" gene 1003857..1005167 /locus_tag="Deba_0889" /db_xref="GeneID:9493341" CDS 1003857..1005167 /locus_tag="Deba_0889" /note="COGs: COG0195 Transcription elongation factor; InterProIPR010213:IPR004087:IPR004088:IPR003029:IPR 013735:IPR012340:IPR015946:IPR009019:IPR016027:IPR010995:I PR018111; KEGG: dal:Dalk_4737 transcription elongation factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; K Homology, type 1, subgroup; SPTR: B8FCY4 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA" /codon_start=1 /transl_table=11 /product="transcription termination factor NusA" /protein_id="YP_003806853.1" /db_xref="GI:302342324" /db_xref="GeneID:9493341" /translation="MSELRRMIDHVAREKGLDREILISTLEEAMQSAARRKLGSKVEV DVAYNDEIGEVEVFEFKEVVEELTDPDTQIGFEDARRLDPDCELGDELGIKVETADFG RIAAQSAKQVIIQRMKDAERDIIFEDFKDRKGEIINGIVQRFDKGSIVVNLGRTEAIL LAREQVPREGYRPGDRVRAYVLDVKRVSRGPQIILSRTHPGFVEALFELEVPEIAEGI VTIEGVAREAGSRTKLGVSSSDRDVDPVGACVGMKGSRVQAVVQELRGEKIDIIAYDS DPARYVVNALAPAEISRVVVDESNNTMEVIVADEMLSLAIGRRGQNVRLASKLTGWKI DVKSESKYSESLRDGYRSLLDVVGVSDIGADTLFQAGYASADALAYANAADLAALPGI DDERAQRLIDDARDYIQRRRQASDAARAGGQAQREAPVAPAADE" misc_feature 1003857..1004888 /locus_tag="Deba_0889" /note="transcription elongation factor NusA; Provisional; Region: nusA; PRK12327" /db_xref="CDD:183442" misc_feature 1003863..1004228 /locus_tag="Deba_0889" /note="NusA N-terminal domain; Region: NusA_N; pfam08529" /db_xref="CDD:192057" misc_feature 1004247..1004447 /locus_tag="Deba_0889" /note="S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and...; Region: S1_NusA; cd04455" /db_xref="CDD:88421" misc_feature order(1004280..1004282,1004304..1004306,1004331..1004333, 1004337..1004339) /locus_tag="Deba_0889" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88421" misc_feature order(1004286..1004288,1004298..1004300,1004325..1004327, 1004331..1004333,1004430..1004432) /locus_tag="Deba_0889" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:88421" misc_feature 1004688..1004867 /locus_tag="Deba_0889" /note="NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134" /db_xref="CDD:48406" misc_feature 1004805..1004816 /locus_tag="Deba_0889" /note="G-X-X-G motif; other site" /db_xref="CDD:48406" gene 1005171..1005458 /locus_tag="Deba_0890" /db_xref="GeneID:9493342" CDS 1005171..1005458 /locus_tag="Deba_0890" /note="COGs: COG2740 nucleic-acid-binding protein implicated in transcription termination; InterPro IPR007393; KEGG: hor:Hore_07830 predicted nucleic-acid-binding protein implicated in transcription termination; PFAM: protein of unknown function DUF448; SPTR: B8DN13 Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF448)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806854.1" /db_xref="GI:302342325" /db_xref="GeneID:9493342" /translation="MTERGRGAPERTCVACKKRAPQEELLRLALRGAEVEPDPKRALP GRGAYICRRAECVERLARMGRRRDGVFKKPVQEQAWTKLLSRLRRQFAPAP" misc_feature 1005198..1005431 /locus_tag="Deba_0890" /note="Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation; Region: YlxR; cl00189" /db_xref="CDD:193699" gene 1005484..1008438 /locus_tag="Deba_0891" /db_xref="GeneID:9493343" CDS 1005484..1008438 /locus_tag="Deba_0891" /note="COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178:IPR005225:IPR009000:IPR006847:IPR 000795:IPR004161; KEGG: dal:Dalk_4738 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein; SPTR: B8FCY5 Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-2" /protein_id="YP_003806855.1" /db_xref="GI:302342326" /db_xref="GeneID:9493343" /translation="MRVFELAKDLGMDQKDLLRHLLDMGIAVSNNMSVLSPEDMQMVR ERVGGERSNVVEEKRVTTRVIRRRRKKTAHGDDGEADGLDAADDADVEADDSELEPPA PAKPVVEPRPAPSTAARIVAPAPAPPTPEPTPEPEPPAVREAASASVAETTTQPEPQP KVVQEKPEVVAVSQAQPEPEPAPAPTSAQTPAPATQPRPSEPQASEPKPGAARIISRP KPEPPREEPRQAPRPEPRAETRPDGDGEARPDGRREVRPGQKKEIKVEAREKPKKKRR FEDEPARIISRPSPQAPPPPPSSAPSYQRPEPRGPRPPYRPPADGPAPGGDMSPPPPK TDQPRRRKKSRKGPATAEEEALANKLGVGRRKQVLDKADLYDAKRRGKGAKGGKKGKK TEVTTPKAIKRRVKVGESIALGELAKRMGIKATEVVAKLLRAGMMVTVNQTLDIEDAI LVAAEFGFEIDRVGFEEEDLLERVVDQPDDLRPRPPVVTIMGHVDHGKTSLLDRIRKS NVVDGEAGGITQHVGAYDVRLPEGGRVVFVDTPGHEAFTQMRARGAQVTDVVVLVVAA DDGVMQQTIEAINHSKAAGVPIVVAVNKIDKPGADIERVRRELADRGLVSEEWGGDTI FAYVSAKTGEGVDNLLELLGLQTEILELKANPGKSALGRIIEARLDKGRGAVATVLVQ EGTLKNGDNFVCGVHAGKVRAMFDDLGRRVDEAGPSIPVEVQGFTGVPEAGDEFAVVE SDKSAKRIAEHRQMKKRESELASIRKLSLENILDQLKEGAVQELALVVKADVQGSVEA LVESLGKLGNDQVRVHVIHSATGAITETDVMLASASNAIIIGFNVRPQGKVAEMAEAE HVEIRNYDVIYQMVDDINKALTGMLAPEFHEEVIGRAEVRDTFSVPKIGTIAGCSVQS GKIHRGAQARLLRDGVVVATTKISSLRRFKEDVKEVVQGFECGIGLENYGDIKVGDEI EVFVVHEVAATL" misc_feature 1005484..1005633 /locus_tag="Deba_0891" /note="Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760" /db_xref="CDD:147093" misc_feature 1006681..1008435 /locus_tag="Deba_0891" /note="translation initiation factor IF-2; Region: IF-2; TIGR00487" /db_xref="CDD:161900" misc_feature 1006708..1006860 /locus_tag="Deba_0891" /note="Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760" /db_xref="CDD:147093" misc_feature 1006939..1007397 /locus_tag="Deba_0891" /note="IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases...; Region: IF2_eIF5B; cd01887" /db_xref="CDD:133287" misc_feature 1006957..1006980 /locus_tag="Deba_0891" /note="G1 box; other site" /db_xref="CDD:133287" misc_feature order(1006960..1006962,1006966..1006968,1006978..1006983, 1006990..1006992,1006999..1007004,1007050..1007055, 1007110..1007115,1007182..1007187,1007290..1007292, 1007302..1007304) /locus_tag="Deba_0891" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133287" misc_feature order(1006963..1006983,1007113..1007115,1007260..1007265, 1007269..1007274,1007368..1007376) /locus_tag="Deba_0891" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133287" misc_feature 1007032..1007052 /locus_tag="Deba_0891" /note="Switch I region; other site" /db_xref="CDD:133287" misc_feature 1007038..1007040 /locus_tag="Deba_0891" /note="G2 box; other site" /db_xref="CDD:133287" misc_feature 1007098..1007109 /locus_tag="Deba_0891" /note="G3 box; other site" /db_xref="CDD:133287" misc_feature 1007104..1007160 /locus_tag="Deba_0891" /note="Switch II region; other site" /db_xref="CDD:133287" misc_feature 1007260..1007271 /locus_tag="Deba_0891" /note="G4 box; other site" /db_xref="CDD:133287" misc_feature 1007368..1007376 /locus_tag="Deba_0891" /note="G5 box; other site" /db_xref="CDD:133287" misc_feature 1007461..1007745 /locus_tag="Deba_0891" /note="This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the...; Region: IF2_mtIF2_II; cd03702" /db_xref="CDD:58093" misc_feature 1007782..1008108 /locus_tag="Deba_0891" /note="Translation-initiation factor 2; Region: IF-2; pfam11987" /db_xref="CDD:152422" misc_feature 1008154..1008405 /locus_tag="Deba_0891" /note="mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation...; Region: mtIF2_IVc; cd03692" /db_xref="CDD:58083" gene 1008446..1008778 /locus_tag="Deba_0892" /db_xref="GeneID:9493344" CDS 1008446..1008778 /locus_tag="Deba_0892" /note="COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: drm:Dred_1275 hypothetical protein; PFAM: protein of unknown function DUF503; SPTR: A4J406 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF503)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806856.1" /db_xref="GI:302342327" /db_xref="GeneID:9493344" /translation="MYVGAMKLTLRAIGAGGLKDKRKIVRAILDRVRAKFNAAASEVG GQDLWQRIELGLAVCGNDPAFVQRQLDEIGRFVERLGLAELADTRVELINLKEMTWAP GAPDEWAT" misc_feature 1008449..1008718 /locus_tag="Deba_0892" /note="Protein of unknown function (DUF503); Region: DUF503; cl00669" /db_xref="CDD:153924" gene 1008742..1009140 /locus_tag="Deba_0893" /db_xref="GeneID:9493345" CDS 1008742..1009140 /locus_tag="Deba_0893" /note="COGs: COG0858 ribosome-binding factor A; InterPro IPR000238:IPR015946; KEGG: hna:Hneap_1466 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: D0L0S5 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A" /codon_start=1 /transl_table=11 /product="ribosome-binding factor A" /protein_id="YP_003806857.1" /db_xref="GI:302342328" /db_xref="GeneID:9493345" /translation="MGARRTRRVGNLILAELAELLLRRVKDPRLEGLTLTAVDVSPDL HQAKVFYSLLDPQRQPQVEAGFAAAAPFLRRELAARLRIKTLPRLEAVFDGSIVRGLA MDELIKKARQADGESAAGQDAAPADEPDDA" misc_feature 1008742..1009089 /locus_tag="Deba_0893" /note="Ribosome-binding factor A; Region: RBFA; cl00542" /db_xref="CDD:186071" gene 1009133..1010089 /locus_tag="Deba_0894" /db_xref="GeneID:9493346" CDS 1009133..1010089 /locus_tag="Deba_0894" /note="COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: hmo:HM1_2316 dhh family domain protein, PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: B0THR6 Dhh family domain protein, PFAM: DHH family; DHHA1 domain" /codon_start=1 /transl_table=11 /product="phosphoesterase RecJ domain protein" /protein_id="YP_003806858.1" /db_xref="GI:302342329" /db_xref="GeneID:9493346" /translation="MLERLVSLLAEARRVFLVAHREPDGDALGATLGLLHLLADNGKD ALAHSAGPVPEEYAFLPGLERLGPAAPEGVDLAVILDCHEPERCGEAVAPFLRALPRV AVIDHHQGRAEFGAAIWVDPSYAATCQMVFDLAGRLGWSVGPRAATCLFVGLQTDTGS FRYGNTTPQALRAAADLVQAGADPWAISQEVYATRPLRLRLLGRVMEAMELFADGRLA LAVVSQADLDALGAKPQDLEQAVEAMRGVPGVAVAALIKQTGPDQCKLSLRSRGGLDV AAVAAGLGGGGHRNAAGARLAMDLASARTLVAELLEPLAAAL" misc_feature 1009154..1009594 /locus_tag="Deba_0894" /note="DHH family; Region: DHH; pfam01368" /db_xref="CDD:189957" gene 1010092..1011099 /locus_tag="Deba_0895" /db_xref="GeneID:9493347" CDS 1010092..1011099 /locus_tag="Deba_0895" /note="COGs: COG0130 Pseudouridine synthase; InterPro IPR014780:IPR020103:IPR012960:IPR002501; KEGG: csa:Csal_3072 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; DKCLD domain protein; SPTR: Q1QSZ2 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: TruB family pseudouridylate synthase (N terminal domain); DKCLD (NUC011) domain; TIGRFAM: tRNA pseudouridine 55 synthase" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase B" /protein_id="YP_003806859.1" /db_xref="GI:302342330" /db_xref="GeneID:9493347" /translation="MGRRRKVKALLRRSGVLVVDKPAGPTSHDLVNALRRRFRPERLG HTGTLDPFATGVLVLVFNQATRLSDLLGGGPKAYEAELVLGRATDTGDVTGRVIEQAA APALEWAQAEAAVAALVGQRMQSPPAYSAAKHEGKPLYAYARAGKIVEKPARPITIYD ARLLGLEAGLLRFAVQCSRGAYVRVLGEDLARALGAPGCLSGLRRVASWPFGLDEAHG LEDALAWSPEELECQMLGLDQALARAGLPTVTLDDHAAWRLGQGQQLPAESLLAPGQG LDQASGPFMARDAAGGLVAVLRWLEPEARAERAYETIRVFPAETDPRVEMTSASALGA E" misc_feature 1010098..1011015 /locus_tag="Deba_0895" /note="tRNA pseudouridine synthase B; Provisional; Region: truB; PRK01851" /db_xref="CDD:179343" misc_feature 1010134..1010988 /locus_tag="Deba_0895" /note="PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of...; Region: PseudoU_synth_EcTruB; cd02573" /db_xref="CDD:30022" misc_feature order(1010167..1010169,1010173..1010175,1010182..1010184, 1010218..1010226,1010230..1010244,1010284..1010286, 1010293..1010298,1010305..1010307,1010317..1010319, 1010323..1010325,1010476..1010490,1010551..1010553, 1010626..1010643,1010704..1010706) /locus_tag="Deba_0895" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:30022" misc_feature order(1010230..1010241,1010641..1010643) /locus_tag="Deba_0895" /note="active site" /db_xref="CDD:30022" gene 1011182..1011451 /locus_tag="Deba_0896" /db_xref="GeneID:9493348" CDS 1011182..1011451 /locus_tag="Deba_0896" /note="COGs: COG0184 ribosomal protein S15P/S13E; InterPro IPR005290:IPR009068:IPR000589; KEGG: pca:Pcar_1560 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: Q3A4A2 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle" /codon_start=1 /transl_table=11 /product="ribosomal protein S15" /protein_id="YP_003806860.1" /db_xref="GI:302342331" /db_xref="GeneID:9493348" /translation="MVLTTEGKRELISKFARSEADTGSPEVQVALLSERIKYLTEHFK THKKDHHSRRGLLKLVGQRRRLLNYLKHKDIERYRSVIKELGIRK" misc_feature 1011203..1011439 /locus_tag="Deba_0896" /note="Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole...; Region: Ribosomal_S15p_S13e; cd00353" /db_xref="CDD:48353" misc_feature order(1011203..1011205,1011254..1011256,1011263..1011265, 1011284..1011286,1011296..1011298,1011305..1011307, 1011317..1011319,1011323..1011328,1011332..1011337, 1011374..1011376,1011386..1011388) /locus_tag="Deba_0896" /note="16S/18S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:48353" misc_feature order(1011269..1011271,1011278..1011283,1011290..1011292, 1011299..1011301,1011419..1011421,1011431..1011433) /locus_tag="Deba_0896" /note="S13e-L30e interaction site [polypeptide binding]; other site" /db_xref="CDD:48353" misc_feature order(1011359..1011361,1011371..1011373,1011434..1011439) /locus_tag="Deba_0896" /note="25S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:48353" gene 1011495..1013744 /locus_tag="Deba_0897" /db_xref="GeneID:9493349" CDS 1011495..1013744 /locus_tag="Deba_0897" /EC_number="2.7.7.8" /note="COGs: COG1185 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterProIPR012162:IPR004087:IPR004088:IPR003029:IPR 015848:IPR012340:IPR020568:IPR015847:IPR016027:IPR001247:I PR018111; KEGG: dal:Dalk_4743 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; PRIAM: polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: B8FCZ0 polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase" /codon_start=1 /transl_table=11 /product="polyribonucleotide nucleotidyltransferase" /protein_id="YP_003806861.1" /db_xref="GI:302342332" /db_xref="GeneID:9493349" /translation="MYKKVATTIGGREFVIETGKIAKQASGAVWVQYGETVVLVTVVG DTNVREGIDFLPLTVDYQEMSYAAGRIPGNFFRREIGRPSEKETLTSRLIDRPVRPRM NKGWTFETQIIATVMSVDRVNEPDVMAMTGASAALMVSDVPFDGPIAGVRVGRVDGQL VLNPTAEQIEKSDLELLVAGSRDAVCMVEGGSLMLGEDEILEAIWFGHAGLQPLLDIQ EELAAAVGKPDREFTPPASDDHELTALVAQAAQSAEPSLAEVLSTKPKLERYAKKRLL KKAVLAAMGEAAAGREGQVKEAVEHLIAEGMRTAILEEGRRIDGRTVTEVRPIDCEVG VLPRTHGSALFTRGETQALVVATLGTAGDEQRIESVTEGDVFRHFLLHYNFPPYSVGE AKRLGGPNRRELGHGALARRAVEKILPAKEDFPYCLRCVSEITESNGSSSMASVCGSS MALMDAGVPVSEAVAGVAMGLIKEGDKMVVLTDIMGDEDHLGDMDFKVAGSARGISAV QMDIKISGISKEIMGQALKQAREGRLHILGEMQKAIDNPRQEISILAPRITTIHVPVE RIKDIIGPGGKVIRGIQMETEARIDIDDDGTVRVAAVDGAASLRAVEMIKELIQEVEE NAVYEGKVVRIMDFGAFVEILPGRDGLIHISELDHTRVRAVTDVIKEGDVVQVKVLGI DDRGKIRLSRKALLPIPEGGVPAPEGDDDRPRYDGPPRGDRPRGDRGPRERNDRNRGD RDRGRRDNR" misc_feature 1011495..1013582 /locus_tag="Deba_0897" /note="polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824" /db_xref="CDD:183327" misc_feature 1011522..1011923 /locus_tag="Deba_0897" /note="3' exoribonuclease family, domain 1; Region: RNase_PH; pfam01138" /db_xref="CDD:189854" misc_feature 1011930..1012124 /locus_tag="Deba_0897" /note="3' exoribonuclease family, domain 2; Region: RNase_PH_C; pfam03725" /db_xref="CDD:190728" misc_feature 1012467..1012871 /locus_tag="Deba_0897" /note="3' exoribonuclease family, domain 1; Region: RNase_PH; pfam01138" /db_xref="CDD:189854" misc_feature 1012884..1013090 /locus_tag="Deba_0897" /note="3' exoribonuclease family, domain 2; Region: RNase_PH_C; pfam03725" /db_xref="CDD:190728" misc_feature 1013160..1013342 /locus_tag="Deba_0897" /note="Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393" /db_xref="CDD:29003" misc_feature order(1013190..1013192,1013196..1013204,1013208..1013222, 1013229..1013234,1013241..1013246,1013259..1013270) /locus_tag="Deba_0897" /note="putative nucleic acid binding region [nucleotide binding]; other site" /db_xref="CDD:29003" misc_feature 1013211..1013222 /locus_tag="Deba_0897" /note="G-X-X-G motif; other site" /db_xref="CDD:29003" misc_feature 1013373..1013570 /locus_tag="Deba_0897" /note="S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA...; Region: S1_PNPase; cd04472" /db_xref="CDD:88437" misc_feature order(1013391..1013393,1013415..1013417,1013445..1013447, 1013451..1013453) /locus_tag="Deba_0897" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88437" misc_feature 1013508..1013513 /locus_tag="Deba_0897" /note="domain interface; other site" /db_xref="CDD:88437" gene 1013762..1015018 /locus_tag="Deba_0898" /db_xref="GeneID:9493350" CDS 1013762..1015018 /locus_tag="Deba_0898" /note="COGs: COG0612 Zn-dependent peptidase; InterProIPR011237:IPR011249:IPR011765:IPR007863:IPR 001431; KEGG: gem:GM21_2975 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; SPTR: C6E2P4 peptidase M16 domain protein; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16)" /codon_start=1 /transl_table=11 /product="peptidase M16 domain protein" /protein_id="YP_003806862.1" /db_xref="GI:302342333" /db_xref="GeneID:9493350" /translation="MAAKTVLDNGVRLLSEKLPQAYSVTVGLWVEVGSRDEPTSLGGV SHFIEHMAFKGTGRRSALDIAREIDRLGGHANAFTGKENTCFHAKALAENMAELCDIL CDIMLRPAYDPVELERERQVILQEISFVDDSPDELVHVLFCQRFWPDHALGRPILGSE ESVAGLGRQAMLDYMEQNYSPANLVVSAVGDIDHGRLEGLLGDVLGALPARPKRAPRQ APVVSPGLLIAPRELEQVQVAIGAPAPATAAPDRFAAAVLNSILGGSMSSRLFQEVRE RRGLAYSIYSYLSSYSDAGMLGVSMGVAPEKAAEAVAVVLDEMERVGQAGAVSHEELT HAKDHLKGSILLSAENPESRMSRLARNEFSFGRHVPMDEVIARLEAVEIEQVRDLARH NLGRDKLGLTILGAVDETALAKEIGL" misc_feature 1013771..1014988 /locus_tag="Deba_0898" /note="Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612" /db_xref="CDD:30957" misc_feature 1013795..1014235 /locus_tag="Deba_0898" /note="Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675" /db_xref="CDD:189663" misc_feature 1014257..1014775 /locus_tag="Deba_0898" /note="Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193" /db_xref="CDD:191225" gene 1015015..1015464 /locus_tag="Deba_0899" /db_xref="GeneID:9493351" CDS 1015015..1015464 /locus_tag="Deba_0899" /EC_number="3.6.1.23" /note="COGs: COG0756 dUTPase; InterPro IPR008181:IPR008180; KEGG: mgm:Mmc1_3419 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; PRIAM: dUTP diphosphatase; SPTR: A0LD62 Deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)" /codon_start=1 /transl_table=11 /product="deoxyuridine 5'-triphosphate nucleotidohydrolase Dut" /protein_id="YP_003806863.1" /db_xref="GI:302342334" /db_xref="GeneID:9493351" /translation="MSQPLVEVMVLSHGRGLALPAYQTALSAGLDLPAALDEPLTIQP GQIAIVPTGLALAIPAGWEGQVRPRSGLAIGKGLTVVNAPGTIDADYRGELKVGLINL GSAAVTIQRGERVAQLIIAPVARATLRVVDDLPETARGAGGFGHTGA" misc_feature 1015096..1015374 /locus_tag="Deba_0899" /note="Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557" /db_xref="CDD:143638" misc_feature order(1015096..1015101,1015135..1015137,1015150..1015155, 1015159..1015161,1015207..1015209,1015213..1015230, 1015246..1015254,1015270..1015272,1015279..1015281, 1015300..1015302,1015306..1015308,1015312..1015314, 1015318..1015320,1015330..1015344,1015351..1015353, 1015363..1015365) /locus_tag="Deba_0899" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:143638" misc_feature order(1015219..1015227,1015270..1015278,1015285..1015287, 1015297..1015302) /locus_tag="Deba_0899" /note="active site" /db_xref="CDD:143638" gene 1015464..1016270 /locus_tag="Deba_0900" /db_xref="GeneID:9493352" CDS 1015464..1016270 /locus_tag="Deba_0900" /note="COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: gme:Gmet_1944 beta-lactamase-like; SPTR: C8QYE7 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_003806864.1" /db_xref="GI:302342335" /db_xref="GeneID:9493352" /translation="MSLRFCVLASGSKGNATYIEGDGGAILVDAGLSARELQRRMAMA ELDPGEIQAVVLTHEHGDHCRGVRVLARRLGVPVLATPKTWAQVQDKKGVAFEPIQAG QALEYCGLHLQPFSVSHDAADPIGLTIGCGGARLGLCTDLGVATKLVQTRLGGCHALI LEANHDPEMLSQGPYPPWLKQRVRSRVGHLSNHDSAQLLTELMHVGLGQVVLAHLSET NNFPELARRAAEGVVRWAGLNTRVEVAAQGEPTPVLEVEPRGRAFAEALN" misc_feature 1015464..1016162 /locus_tag="Deba_0900" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 1016384..1018834 /locus_tag="Deba_0901" /db_xref="GeneID:9493353" CDS 1016384..1018834 /locus_tag="Deba_0901" /EC_number="3.4.21.53" /note="COGs: COG0466 ATP-dependent Lon protease; InterProIPR004815:IPR003111:IPR003593:IPR020568:IPR 001984:IPR003959:IPR008269:IPR008268; KEGG: gem:GM21_0618 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; ATPase AAA; SPTR: C6E076 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La" /codon_start=1 /transl_table=11 /product="ATP-dependent protease La" /protein_id="YP_003806865.1" /db_xref="GI:302342336" /db_xref="GeneID:9493353" /translation="MDRHDDLFDEAPLEPDELVEEENLPDKLPLLPVRDVVVFPYMIL PLFVARDGSVAAVEAAMARDQMIMLVAQRDQAVEQPEPGDLFEIGCVGMIMRQLKMPD GRIKILVQGLTRARVSSWERHAPYLEVGIEALAEEKEREGEQSPEVEALIRNVREASE KILSLRGLLSSDVVAILNSVETPGRLADMVASNLRLRIDKAQEILEEMDPAGRLALVH GHLGKEVEVSTIQAQIQSEAQEEISKTQREYYLREQIRAIRRELGDGEDRAAELFELR QTILDMRMPQDVREESLKQLSRLENMQPESAEATVIRTYLDWVVELPWQKSTRDKLDI AKAKAILDEDHYDLAKVKDRILEQLSVRKLNPRGKGPIICFIGPPGVGKTSLGRSIAR AMGRKFVRLSLGGVRDEAEIRGHRRTYIGAMPGRILQGLKQAGSNNPVFMIDEVDKVG SDYRGDPTSALLEVLDPEQNNAFSDHYLNLPFDLSKVMFITTANVEDTIPEPLLDRME VIELPGYTDDEKVQIARKHLIDRQLKETGLWRRKVRISDGAILEIIRNYTREAGLRSL ERELGAILRKIARQVAEGKAGALSVNAAAVQKYLGVRKYLPEDDRGEGEVGVATGLAW TSAGGEVLRVEVAILDGKGNLTSTGSLGEVMSESAQAALSYVRGRAGAFGLKKDFYEH LDIHLHVPSGAIPKDGPSAGVTICTAMVSALTGVPVREDVAMTGEITLTGKVLPIGGL KEKTLAALRMGLKTVIVPAKNHKELAEIPLKVSRGLKLVQVEHMDQILELALAGKPRK KRVAPAKGKARPAAAGEN" misc_feature 1016441..1018759 /locus_tag="Deba_0901" /note="ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466" /db_xref="CDD:30814" misc_feature 1016453..1017037 /locus_tag="Deba_0901" /note="Found in ATP-dependent protease La (LON); Region: LON; cl01056" /db_xref="CDD:141077" misc_feature 1017440..1017928 /locus_tag="Deba_0901" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1017512..1017535 /locus_tag="Deba_0901" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1017515..1017538,1017713..1017715,1017857..1017859) /locus_tag="Deba_0901" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1017701..1017718 /locus_tag="Deba_0901" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1017899..1017901 /locus_tag="Deba_0901" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1018151..1018759 /locus_tag="Deba_0901" /note="Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362" /db_xref="CDD:191262" gene 1018838..1020001 /locus_tag="Deba_0902" /db_xref="GeneID:9493354" CDS 1018838..1020001 /locus_tag="Deba_0902" /note="COGs: COG1641 conserved hypothetical protein; InterPro IPR002822; KEGG: gsu:GSU0141 hypothetical protein; PFAM: protein of unknown function DUF111; SPTR: Q74GV3 UPF0272 protein GSU0141; PFAM: Protein of unknown function DUF111; TIGRFAM: conserved hypothetical protein TIGR00299" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806866.1" /db_xref="GI:302342337" /db_xref="GeneID:9493354" /translation="MPNVLYIDACGGASGDMLAGALLDLGWPLDELRALAAAMGLADT RLEAKVVEHNHLRALRLEVDCAEKQPHRHLRHVLEHLDRLPADVAEAAGRVFRRLAEA EARVHGIEVERVHFHEVGAVDAIIDVTAFCAGLAWLGWPRLVCSPLPLGQGFVDCAHG RLPLPAPAVLNLLGGVPVRPWPAEEETVTPTGAALLSTLAHQFGPLPAMRLEAVGVGG GSRQGQCGPNIARLLTGQEDDGVLRDELVEIVCHIDDMQPEDIPLAIARLMSAGALDA AAAPLQMKKGRPGWRFIVLARPEQAEELAALVLEQTTTLGVRLRRMGRMILPRRVIEV QSPWGQARIKVSSTSQGPRLHPEADDVAAIAQRTGLAPAKVRQELTALAAAQL" misc_feature 1018919..1019974 /locus_tag="Deba_0902" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1641; cl03398" /db_xref="CDD:186571" misc_feature 1018919..1019968 /locus_tag="Deba_0902" /note="Protein of unknown function DUF111; Region: DUF111; pfam01969" /db_xref="CDD:145249" gene complement(1020064..1020447) /locus_tag="Deba_0903" /db_xref="GeneID:9493355" CDS complement(1020064..1020447) /locus_tag="Deba_0903" /note="COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068:IPR008978; KEGG: dol:Dole_2642 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: A8ZX66 Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family" /codon_start=1 /transl_table=11 /product="heat shock protein Hsp20" /protein_id="YP_003806867.1" /db_xref="GI:302342338" /db_xref="GeneID:9493355" /translation="MTMLEKNAATDVSAEQTRPAPVFQPPVDIYETDEMLVVLADLPG VKADELAIDLENDVLRLQGGANGEAEGEPLLREYQLGRYLRQFTINEAIDRQAISAEL KNGQLTLRLPKAAKAMPRKIQVSQA" misc_feature complement(1020109..1020366) /locus_tag="Deba_0903" /note="Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are...; Region: ACD_sHsps-like; cd06464" /db_xref="CDD:107221" misc_feature complement(order(1020130..1020135,1020193..1020195, 1020316..1020321,1020325..1020327,1020331..1020333, 1020352..1020366)) /locus_tag="Deba_0903" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107221" gene complement(1020463..1020924) /locus_tag="Deba_0904" /db_xref="GeneID:9493356" CDS complement(1020463..1020924) /locus_tag="Deba_0904" /note="COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068:IPR008978; KEGG: dol:Dole_2643 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: A8ZX67 Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family" /codon_start=1 /transl_table=11 /product="heat shock protein Hsp20" /protein_id="YP_003806868.1" /db_xref="GI:302342339" /db_xref="GeneID:9493356" /translation="MLTTRIFNPYGSWRGALSEVDRLRQEMGRLLGAISGEVAGLPSA GVFPLVNISQAEDKFIVTAELPGVAAEDVDISVVGKNVGIKGERKPPELPEGAKFHRR ERAYPKFNRMLGLPDEVDAERVSAKLTDGVLTIILPKAAAALPKKISVNAA" misc_feature complement(1020523..1020774) /locus_tag="Deba_0904" /note="Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are...; Region: ACD_sHsps-like; cd06464" /db_xref="CDD:107221" misc_feature complement(order(1020529..1020534,1020592..1020594, 1020724..1020729,1020733..1020735,1020739..1020741, 1020760..1020774)) /locus_tag="Deba_0904" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107221" gene complement(1021113..1022411) /locus_tag="Deba_0905" /db_xref="GeneID:9493357" CDS complement(1021113..1022411) /locus_tag="Deba_0905" /note="COGs: COG1503 peptide chain release factor 1 (eRF1); KEGG: rmr:Rmar_2532 peptide chain release factor 1 (eRF1)-like protein; SPTR: D0MFR9 peptide chain release factor 1 (ERF1)-like protein" /codon_start=1 /transl_table=11 /product="peptide chain release factor 1 (eRF1)" /protein_id="YP_003806869.1" /db_xref="GI:302342340" /db_xref="GeneID:9493357" /translation="MIRPAPGGASIWPGQAPTASGPAPRPSPHHAAGDRFLPTGSRPA SRVVPILFKEEHQMLDATTLRHLAQLDAHPHGIVSLYLSLDGLRDARGLAMGEMIKRA EKQLQGNGAAGQWDDLAADRQAIMRHVEELPADHGRGLAVFSSSKSGMFQAYALAAPV PNMLEVGPAPYIRPLAALASDHRRSLTVLIDRKAARLFFGYLGEVRELELTQLSAEEG VFERDGGQGRAGDNQVGRWEDQAAARFHKAVTAIVKNLCHELDCQQLIVGGARQAADE FAAQLPPELAKLLAGSFVADCGAPAGQVAQHIAEVQEKARRVRQHDLLRTMSENLGPG GKVATGLNQVLASVYEGQVRTLVVKRGYRAAGGVCPACGRLRHVAEPCPICGQKMTAV ADVVNLAVARALASGARLEQVAEDSILDDMGGVAAMLRYS" misc_feature complement(1021116..1022225) /locus_tag="Deba_0905" /note="Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]; Region: eRF1; COG1503" /db_xref="CDD:31692" gene 1022637..1024049 /locus_tag="Deba_0906" /db_xref="GeneID:9493358" CDS 1022637..1024049 /locus_tag="Deba_0906" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR003593:IPR002078:IPR001789:IPR011006:IPR 009057:IPR020441:IPR002197; KEGG: dal:Dalk_0661 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; SPTR: B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806870.1" /db_xref="GI:302342341" /db_xref="GeneID:9493358" /translation="MKKNENRGAALVVDEGPDRFSVWQEALVERGFNFHGVASPDEAV PMADQHYFDLMFVRETIAGRPTDELLARLLDMMPESVATVLADDESVDRAVRAMRLGA FNYIRAPRRKEEALGPLEEALEYRRLRRDGALRRRQLNQKYDVDNIVGASQAMQDVFR LIHKVARADSTVLILGESGTGKELVARAIHHQSRRADRPLVPVNCGAIPEDLLESELF GHEKGAFTGAIKTRAGRFELAEGGTIFLDEVGDMSPQLQVKLLRVLQEHQFERVGGGK TIDADIRVLAATNRDLREMVATGRFREDLYYRLNVVPIRVPPLRQRRSDIPLLCGHFI QRLSRQKGLEPRTIHPEVMGRLMRYAWPGNVRELENMLERMCILADGEVIGLDDLPVR LAALEPGPPPDEPERPAEHQLPLDGLDFNEAVDSFERALIVQALERTNWVKNQAAALL RLNRTTLVEKIKKKGIKCDE" misc_feature 1022667..1024034 /locus_tag="Deba_0906" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 1022667..1022963 /locus_tag="Deba_0906" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1022676..1022681,1022808..1022810,1022832..1022834, 1022892..1022894,1022949..1022951,1022958..1022963) /locus_tag="Deba_0906" /note="active site" /db_xref="CDD:29071" misc_feature 1022808..1022810 /locus_tag="Deba_0906" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1022817..1022822,1022826..1022834) /locus_tag="Deba_0906" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1022958..1022963 /locus_tag="Deba_0906" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1023099..1023590 /locus_tag="Deba_0906" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1023162..1023185 /locus_tag="Deba_0906" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1023165..1023188,1023375..1023377,1023501..1023503) /locus_tag="Deba_0906" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1023363..1023380 /locus_tag="Deba_0906" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1023558..1023560 /locus_tag="Deba_0906" /note="arginine finger; other site" /db_xref="CDD:99707" gene 1024271..1027528 /locus_tag="Deba_0907" /db_xref="GeneID:9493359" CDS 1024271..1027528 /locus_tag="Deba_0907" /note="InterProIPR019734:IPR013026:IPR011990:IPR001440:IPR 013105; KEGG: dvm:DvMF_1325 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: B8DLL2 hypothetical protein; TIGRFAM: outer membrane assembly lipoprotein YfiO" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806871.1" /db_xref="GI:302342342" /db_xref="GeneID:9493359" /translation="MFFALALVALAFSAWPAAAARLTDVSVTQSGGATRLVLRADGPL RFQLDLTGPESIEIALAETIMAAELPAVPQGLIGDIGLDRRGDDLVLAVRFSQPGVTV LPIYDAPAKRLTIELGGRPGQEERLAPPPEPEPSATPAPTAEPAATPTPPTQVAPAAA TAPLVRAVRVVSHDGFTRVALLADGPIEASFQAEGQVGWLRLKRGGLAPDASWDRPDR RVLGLGVIGRQPLVLRLQLARPAVRHRLFAAEDGRSAVLDLDLDGPPPAASTRQPMPA PPAAAEPTPEPTATPTASPPPPAPEASAPTASPAPPAPEAPKTALAGPVTPAPTPGFS ARMELRAQHLARNMPALAAVATIDRREPYLARGPMPPMPTPPALARPRQTATAQPGPT PGPPQDAAQVLAAIKNAQQAAPAQPSTPASQPAPASQATPAPPTAAQEADRQRQIADA LLSRGRSALEERDYNQALLAFQELMDRFPKDQAVGEAMFRFADAFYYENERKMAAKFH DVMFNYQRAIDLHPQSDQVPWALLMMGKASMAFGEPFRGMGYFEIVINDYPKSPYVPL ALVNRGGAFQEQGKFAMAVAEYERVLASYPQSDYRVDAQWGLAKAYFGMARFRAASDV LLEMAKENPQMHLQNPELLYYLGEAEFQLRDYNKARFYFLWALNIRPDMRDGDIILTR VGDSYGYQGQDRAAREIYAQVIDMYPDTDGALVARIRLAESPEKDIEHPWDIFQVKAD LDAYRTYKEIADKYADRQVGQLAKVKLAVYHYKKNEFVKAIDTLEKFLQLNPNTPFRP EVDYTMNLAAIGLLEGLRAENKPMELMDAYLRNRVLLTRPNSNQMLSLLAWAYESTGL YDRAAGLYKVLASRGMVDSKIWLAWAENLAKSGQTKEAVGVLEDIDTANLKGPEITRV RSLLGRMLCLDGQYEKAAKALQELIKGSPNHGGAEADYRALGQSLAALNRPAEALPAF EKAIALLTPMQGPEIDLERYLLAMEAGAAAVASGKLDLGVTHFATAESLAQSPADKAQ AMYELSRTYGRLGQSKRMTEVLNDLAKMDLTPWSEMAKGALNDQKLSKRLLQMGK" misc_feature 1025612..1026172 /locus_tag="Deba_0907" /note="outer membrane assembly lipoprotein YfiO; Region: OM_YfiO; TIGR03302" /db_xref="CDD:188304" misc_feature 1025969..1026286 /locus_tag="Deba_0907" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1025969..1025971,1025975..1025980,1025987..1025992, 1026086..1026091,1026095..1026100,1026107..1026112, 1026200..1026205,1026212..1026217,1026224..1026229) /locus_tag="Deba_0907" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1025984..1025986,1026020..1026022,1026032..1026034, 1026041..1026043,1026095..1026097,1026131..1026133, 1026143..1026145,1026152..1026154,1026209..1026211, 1026245..1026247,1026257..1026259,1026266..1026268) /locus_tag="Deba_0907" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature <1026200..1026433 /locus_tag="Deba_0907" /note="tol-pal system protein YbgF; Provisional; Region: PRK10803" /db_xref="CDD:182745" misc_feature <1026554..1027441 /locus_tag="Deba_0907" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" misc_feature 1026896..1027204 /locus_tag="Deba_0907" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1026896..1026901,1026905..1026910,1026917..1026922, 1027016..1027021,1027025..1027030,1027037..1027042, 1027127..1027132,1027139..1027144,1027151..1027156) /locus_tag="Deba_0907" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1026914..1026916,1026950..1026952,1026971..1026973, 1026980..1026982,1027025..1027027,1027061..1027063, 1027073..1027075,1027082..1027084,1027136..1027138, 1027172..1027174,1027184..1027186,1027193..1027195) /locus_tag="Deba_0907" /note="TPR motif; other site" /db_xref="CDD:29151" gene 1027608..1029005 /locus_tag="Deba_0908" /db_xref="GeneID:9493360" CDS 1027608..1029005 /locus_tag="Deba_0908" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR002078:IPR011006:IPR 009057:IPR020441:IPR002197; KEGG: dal:Dalk_0663 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: Q1NVH0 Response regulator receiver; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003806872.1" /db_xref="GI:302342343" /db_xref="GeneID:9493360" /translation="MSRDEGKNILVVDDDQDLCKDLAGYLTRAGHQVKVGLDGAEALL ALDDGRPFDLVITGLNLPRAGGMDILRAVKGRQPATPVVILTQTGSVRHAVEAMKEGA ADFLLKPVTVELMEELAQRMLRPKSPAKAGKGQRQIVTQDMRMQKLLEMARAVADSRA TVLISGESGTGKELFARYLHDNSSRRGGPFVAVNCASLPDGLLESELFGHEKGAFTGA VARKPGRFELANEGTILLDEISEMAVGLQAKLLRVLQEGEIDRVGGKRPVPVDVRVVA TTNRDLKEHIAKGEFREDLYYRLNVIPLRIPPLRQRPGDILPLAQHFLAQFAAENNRP ALTLGPEAQRMILAHQWPGNVRELQNTMERAVLLAQGEVVGPAALLFEDQLAGFAEGL GFAEPPVEQPLPFEAEAGPIPTLRDAERSLIMRALDDTEGNRTHAAKMLGISVRTLRN KLNEYKLKHGMDATP" misc_feature 1027626..1028978 /locus_tag="Deba_0908" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 1027635..1027976 /locus_tag="Deba_0908" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1027644..1027649,1027779..1027781,1027803..1027805, 1027863..1027865,1027920..1027922,1027929..1027934) /locus_tag="Deba_0908" /note="active site" /db_xref="CDD:29071" misc_feature 1027779..1027781 /locus_tag="Deba_0908" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1027788..1027793,1027797..1027805) /locus_tag="Deba_0908" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1027929..1027937 /locus_tag="Deba_0908" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1028022..1028507 /locus_tag="Deba_0908" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1028103..1028126 /locus_tag="Deba_0908" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1028106..1028129,1028316..1028318,1028442..1028444) /locus_tag="Deba_0908" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1028304..1028321 /locus_tag="Deba_0908" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1028499..1028501 /locus_tag="Deba_0908" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1028847..1028972 /locus_tag="Deba_0908" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene 1029226..1029627 /locus_tag="Deba_0909" /db_xref="GeneID:9493361" CDS 1029226..1029627 /locus_tag="Deba_0909" /note="COGs: COG1815 flagellar basal body protein; InterPro IPR006300; KEGG: gme:Gmet_3115 flagellar basal-body rod protein FlgB; SPTR: Q39QZ5 flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB" /codon_start=1 /transl_table=11 /product="flagellar basal-body rod protein FlgB" /protein_id="YP_003806873.1" /db_xref="GI:302342344" /db_xref="GeneID:9493361" /translation="MSIVDIFDRNVELLNANLDRRAQSHRLIARNVSNIDTPNYSGTG LEFEKQLRAAIKGDVLPTSMQRTDPRHLPIDEGAAFADAQGVYKDTGPVHLDIEMSKL AENNIMFNTMVTLLNKKFSLLKTAIADSGGK" misc_feature 1029235..1029606 /locus_tag="Deba_0909" /note="flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK05680" /db_xref="CDD:180196" misc_feature 1029286..1029606 /locus_tag="Deba_0909" /note="Flagella basal body rod protein; Region: Flg_bb_rod; cl15245" /db_xref="CDD:197453" gene 1029629..1030072 /locus_tag="Deba_0910" /db_xref="GeneID:9493362" CDS 1029629..1030072 /locus_tag="Deba_0910" /note="COGs: COG1558 flagellar basal body rod protein; InterPro IPR001444:IPR010930:IPR006299; KEGG: mgm:Mmc1_0267 flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: C7ILJ6 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC" /codon_start=1 /transl_table=11 /product="flagellar basal-body rod protein FlgC" /protein_id="YP_003806874.1" /db_xref="GI:302342345" /db_xref="GeneID:9493362" /translation="MDFVTSMEISASGLSAQRTRLNIISQNLANAETTRTAEGGPYRR RVTVMSAQPFVSHLEQAIDSPPQQQDPRKGVLVNEIAQDNSPFKKVHDPSHPDADADG YVLYPNVDVVTEMVNLISATRSYEANVSAVGASKNMALKALEIAR" misc_feature 1029629..1030069 /locus_tag="Deba_0910" /note="flagellar basal body rod protein FlgC; Reviewed; Region: flgC; PRK05681" /db_xref="CDD:180197" misc_feature 1029647..1029733 /locus_tag="Deba_0910" /note="Flagella basal body rod protein; Region: Flg_bb_rod; cl15245" /db_xref="CDD:197453" misc_feature 1029947..1030063 /locus_tag="Deba_0910" /note="Domain of unknown function (DUF1078); Region: DUF1078; pfam06429" /db_xref="CDD:191521" gene 1030088..1030381 /locus_tag="Deba_0911" /db_xref="GeneID:9493363" CDS 1030088..1030381 /locus_tag="Deba_0911" /note="COGs: COG1677 flagellar hook-basal body protein; InterPro IPR001624; KEGG: gem:GM21_3923 flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; SPTR: C6MM83 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE" /codon_start=1 /transl_table=11 /product="flagellar hook-basal body complex subunit FliE" /protein_id="YP_003806875.1" /db_xref="GI:302342346" /db_xref="GeneID:9493363" /translation="MSVGPIKPLVGMVTGTPGFQDPKAQGGFADTLKQAVNEVEQMHQ TAENSVQDLATGSRKTLHQTMIDVEKADIAFRMLMGVRGKMIGAYQEIWRMNF" misc_feature 1030088..1030372 /locus_tag="Deba_0911" /note="Flagellar hook-basal body complex protein FliE; Region: FliE; cl09139" /db_xref="CDD:195803" gene 1030401..1032083 /locus_tag="Deba_0912" /db_xref="GeneID:9493364" CDS 1030401..1032083 /locus_tag="Deba_0912" /note="COGs: COG1766 flagellar biosynthesis/type III secretory pathway lipoprotein; InterPro IPR000067:IPR006182:IPR013556; KEGG: dvl:Dvul_2668 flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; SPTR: Q1NVG6 flagellar FliF M-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: Secretory protein of YscJ/FliF family; flagellar M-ring protein C-terminal; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)" /codon_start=1 /transl_table=11 /product="flagellar M-ring protein FliF" /protein_id="YP_003806876.1" /db_xref="GI:302342347" /db_xref="GeneID:9493364" /translation="MADNTPKKSPETAAARIDDEGASPQSGGVAGIIRDMPTGRKVAM LGLAALAAASLVAVFLWLNQPDYQTLFSGLSQQDASQVVNQLKDMKLDYKLESGGTTI LVPEESVYEARLTLASAGLPRGTAGVGFEVFNEVQMGATDFVQRINYQRALQGELART ISSFGEVEDARVHIVLPRESLFVEDEKKPSAAVVVRLARGQSLSAGQIAGVVHLVAGS VPDLTDDRVTIVDTNGNLLYRKDVDTADFPAALTASQLDYQKNLERGFVAKVQSMLEE VLGPGRAVVRVNADIDFTRTSTTQDLFDPDQVAVRSETRASDKSINSGNMPIGSPDQR FTLAEANANPEEGQNQSKTDTENETTNYEISRTQKQVQKAIGGLQRLTVAVMIDGPYK DAADAEGNTTRSFAPRSAEEMQQLTELVRRAVGYDAQRGDQVTLANIPFQLPVGTDDM GVMTWEDYLKQWGKPALNIILALLFFLLVIRPALKMASRYVNARSELAAATRRVGPGE ELPGGGMDEQAAALAESAMSRKIGVRDQILLVAQQDPERATAALRGWIHETE" misc_feature 1030482..1032080 /locus_tag="Deba_0912" /note="flagellar MS-ring protein; Reviewed; Region: fliF; PRK06007" /db_xref="CDD:180348" misc_feature 1030587..1031111 /locus_tag="Deba_0912" /note="Secretory protein of YscJ/FliF family; Region: YscJ_FliF; cl01907" /db_xref="CDD:186494" misc_feature 1031220..1031723 /locus_tag="Deba_0912" /note="Flagellar M-ring protein C-terminal; Region: YscJ_FliF_C; pfam08345" /db_xref="CDD:192009" gene 1032102..1033112 /locus_tag="Deba_0913" /db_xref="GeneID:9493365" CDS 1032102..1033112 /locus_tag="Deba_0913" /note="COGs: COG1536 flagellar motor switch protein; InterPro IPR000090:IPR011002; KEGG: dba:Dbac_3030 flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; SPTR: C0GRQ1 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG" /codon_start=1 /transl_table=11 /product="flagellar motor switch protein FliG" /protein_id="YP_003806877.1" /db_xref="GI:302342348" /db_xref="GeneID:9493365" /translation="MAVGDKLTGVQKTAIVLASLGEQFAAEIFKQMDEEEIRQVGLAM SKLNQVDAKVVDAVLMEFLEKLRGDSGPLVGGSKTAQRALALAMGEDAARDIIADMER SIEPVPFERVKTVDSKTLASFIKSEHPQTIAVILSHLPQMKAAEVLREFPENLQYDVV LRISNLDVIPPGIIEEIDAVLQREIVSTEGAEAKQLGGVEAVAELLNNVDKATEEHIF GRLEEDDPEMAEKIRQLMFVFEDLINVDDRGIRTLLKEVRNEDLTVALKTSSEDLRAK ILGNVSERAAAMIQEDLEVMGPVRLSEVEQSQQKIIQIARRLEKEGKIAIGGKGGEDV LV" misc_feature 1032102..1033055 /locus_tag="Deba_0913" /note="flagellar motor switch protein G; Validated; Region: fliG; PRK05686" /db_xref="CDD:180201" misc_feature 1032762..1033055 /locus_tag="Deba_0913" /note="FliG C-terminal domain; Region: FliG_C; pfam01706" /db_xref="CDD:190075" gene 1033105..1033935 /locus_tag="Deba_0914" /db_xref="GeneID:9493366" CDS 1033105..1033935 /locus_tag="Deba_0914" /note="COGs: COG1317 flagellar biosynthesis/type III secretory pathway protein; KEGG: dal:Dalk_0669 flagellar assembly protein FliH; SPTR: B8FJU6 flagellar assembly protein FliH; PFAM: flagellar assembly protein FliH" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis/type III secretory pathway protein" /protein_id="YP_003806878.1" /db_xref="GI:302342349" /db_xref="GeneID:9493366" /translation="MSKAESDSQVRDFSLGEFQAGRKPAPRPAGDTAFHPGQFEPLNL GQPEEDPRERAQRQAKQMVDEANAQVAQAKKDVERIRAQAYEEGYKQGQQEGHAASQA RIEAAMSNLEAAATALARAKANVLAHMEREIVALVQAAVDGVFLSVDAMPAKLLRQVV GRAVAQIGESERLTIHCSAADAETLREFRPQLLDAIASLAQVDLNVRDDLRPGDCLVE SPETMVDATLQTRRQAILAQLEQTLRQGPPLDLAGLADQPPAAPAADWAAAGDPGEDW " misc_feature 1033210..1033836 /locus_tag="Deba_0914" /note="type III secretion system protein; Reviewed; Region: PRK06937" /db_xref="CDD:180763" misc_feature 1033486..1033809 /locus_tag="Deba_0914" /note="Flagellar assembly protein FliH; Region: FliH; pfam02108" /db_xref="CDD:111047" gene 1033935..1035251 /locus_tag="Deba_0915" /db_xref="GeneID:9493367" CDS 1033935..1035251 /locus_tag="Deba_0915" /note="COGs: COG1157 flagellar biosynthesis/type III secretory pathway ATPase; InterProIPR004100:IPR000194:IPR005714:IPR020005:IPR 003593; KEGG: dma:DMR_45080 flagellum-specific ATP synthase; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; SPTR: Q1NVG3 ATPase FliI/YscN; TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI" /codon_start=1 /transl_table=11 /product="flagellar protein export ATPase FliI" /protein_id="YP_003806879.1" /db_xref="GI:302342350" /db_xref="GeneID:9493367" /translation="MGAPSLGRYCDQLRACQPLTVLGRVSQVVGLVAEVRGLELPVGA SVFLHLDEGPVLGEVVGFKGQGVQIMPYADTRGLRPGCLVSSAGGAGLVKVGQALLGR VLDGLGNPVDGGPMPEWDQLYPLYRQAPSAMGRPRISQPVDVGVKVINALLTLGKGQR IGIFAGSGVGKSTLMSMIARHTQADISVIGLVGERGRELREFIERDLGPEGLARSVVI VATSDQPALVRMRAAYLATAVAEYFRDQSRDVILMMDSVTRFAMAGREVGLSIGEPPT TKGYTPSVFAQLPRLLERAGTSEGGGSITGIYTVLVEGDDVTEPVADAMRSILDGHFV LTRALADRGHYPAIELLGSISRLARDINPPEVTTAARRLTELLAAYRRNEDLINIGAY ADGSNPVIDRAIRMMERINKFLTQPVEKGVDITASRRELVQLMAQK" misc_feature 1034001..1035227 /locus_tag="Deba_0915" /note="flagellar protein export ATPase FliI; Region: FliI_clade1; TIGR03496" /db_xref="CDD:163292" misc_feature 1034211..1035182 /locus_tag="Deba_0915" /note="Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136" /db_xref="CDD:30002" misc_feature 1034430..1034450 /locus_tag="Deba_0915" /note="Walker A motif/ATP binding site; other site" /db_xref="CDD:30002" misc_feature 1034685..1034699 /locus_tag="Deba_0915" /note="Walker B motif; other site" /db_xref="CDD:30002" gene 1035254..1035700 /locus_tag="Deba_0916" /db_xref="GeneID:9493368" CDS 1035254..1035700 /locus_tag="Deba_0916" /note="InterPro IPR012823; KEGG: gem:GM21_3918 flagellar export protein FliJ; SPTR: C6E8E4 flagellar export protein FliJ; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ" /codon_start=1 /transl_table=11 /product="flagellar export protein FliJ" /protein_id="YP_003806880.1" /db_xref="GI:302342351" /db_xref="GeneID:9493368" /translation="MAFRFRLQSVLDHRKHLEEKAQGEMATRLQKQLACQRQLEWIAG EMTRNRQELARRGAQGISAQEFALAGDYATTLRLHQMRAGSQLELLKAETEIARQKLL EATRDRKAMDILRERHLQDYLAEERRQERIAMDEAAVRGFLGKADR" misc_feature 1035257..1035682 /locus_tag="Deba_0916" /note="Flagellar FliJ protein; Region: FliJ; cl09161" /db_xref="CDD:195810" misc_feature 1035263..1035685 /locus_tag="Deba_0916" /note="flagellar export protein FliJ; Region: flagell_FliJ; TIGR02473" /db_xref="CDD:131526" gene 1035697..1036392 /locus_tag="Deba_0917" /db_xref="GeneID:9493369" CDS 1035697..1036392 /locus_tag="Deba_0917" /note="InterPro IPR006668; KEGG: mag:amb3500 FlaA locus 229 kDa protein; PFAM: MgtE intracellular region; SPTR: Q2W1H1 FlaA locus 229 kDa protein; PFAM: MgtE intracellular N domain" /codon_start=1 /transl_table=11 /product="MgtE intracellular region" /protein_id="YP_003806881.1" /db_xref="GI:302342352" /db_xref="GeneID:9493369" /translation="MKLGLLGKILVVGLALKAAALIGALFVGGPGLPPVAQPVAAQEA AQPAPAAQEAAQEPAPEGQPPAEGAQEPAAPPPSQPANYDPRLIELLDQKKKKLALEE ERLQQERKELQKLREEVNGRIVELQKVQTALEGLIDQQNKARQERIEQLVKVLGNMRP QPAADVISKLDLDMSVEIFRRMNSRTAGKVMASLEPERAAQISTLLTQQQKSEQAAKV ARDAAAAGAEPAE" misc_feature <1036051..1036332 /locus_tag="Deba_0917" /note="MgtE intracellular N domain; Region: MgtE_N; cl15244" /db_xref="CDD:197452" gene complement(1036466..1038706) /locus_tag="Deba_0918" /db_xref="GeneID:9493370" CDS complement(1036466..1038706) /locus_tag="Deba_0918" /note="COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR009010:IPR006963:IPR006656:IPR006657; KEGG: dal:Dalk_0693 molydopterin dinucleotide-binding region; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: B8FJX0 Molydopterin dinucleotide-binding region; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_003806882.1" /db_xref="GI:302342353" /db_xref="GeneID:9493370" /translation="MAEQSQTRTVFKTCPLCEATCGLAITLQGDQVTHVTGDKLDVFS KGYLCPKGASIAQLHNDPDRLRRPLMRIDGQLREVSWPEAFQAVEQGLGRVIAEHGRD AVAVYLGNPNSHTMAGNLFMRPMLKALASKNIFSASSVDQLPKHVSCGLMFGSPATIP VPDIERTDYLLMLGANPLESNGSLCTAPDFPGRLRALRQRGAKLVVIDPRRTRTAELA DEHFFIRPGTDALLLMAMVNSLFAQNLADPGPMAQHVNGLDDLRELSRPFTPQAVAGP CGLAAADIQRLARELAQAPSAVVYGRMGASTQEFGALANWLIDAINVLIGSFDRPGGA MFPTPAHLPPRFKAGGKGWSMGRWTSPATGAPEVIGEFPVATLAQTIEAQGAGAARAL ITIAGNPALTCPNSQRLDKALASLDFLVCVDFYLNETARHADVILPPCGPLSTAQYDI VFYGFAVHNVANFSPPVIAPGPDELDKWRIMLKLALILAGQGAAADPLTLEQMIIEGA LNQAIQAKGSPLAGRQPAELLAQLHGGPGPGRLLDLMLRTGAYGDWFGLNPQGLSLDV LLANPHGVDLGPLKPGVPNVLRTPSAKIELAPSPLAADVDRLAQAMERPPAGTLLVGR RNLRSNNSWMHNIPPLVAGKGRCTLLVHPQDAAALGLEDGKTAVIASRVGSLQMTVEL SEALMPGVVCAPHGWGHHAAGARLSVAAANPGVNSNVLTDDQLLDRLSGNCVLNGIPV TIQPAA" misc_feature complement(1036469..1038706) /locus_tag="Deba_0918" /note="Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]; Region: BisC; COG0243" /db_xref="CDD:30592" misc_feature complement(1036883..1038673) /locus_tag="Deba_0918" /note="The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to...; Region: MopB_1; cd02762" /db_xref="CDD:73327" misc_feature complement(order(1038560..1038562,1038644..1038646, 1038656..1038658,1038665..1038667)) /locus_tag="Deba_0918" /note="putative [Fe4-S4] binding site [ion binding]; other site" /db_xref="CDD:73327" misc_feature complement(order(1037372..1037374,1037387..1037392, 1037426..1037428,1037435..1037443,1037513..1037521, 1037681..1037683,1037687..1037689,1037792..1037803, 1038020..1038022,1038080..1038088,1038167..1038172, 1038179..1038181,1038185..1038190,1038293..1038301, 1038305..1038307,1038554..1038556)) /locus_tag="Deba_0918" /note="putative molybdopterin cofactor binding site [chemical binding]; other site" /db_xref="CDD:73327" misc_feature complement(1036472..1036849) /locus_tag="Deba_0918" /note="The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the...; Region: MopB_CT_1; cd02782" /db_xref="CDD:30314" misc_feature complement(order(1036490..1036495,1036553..1036555, 1036616..1036618,1036814..1036825,1036829..1036843)) /locus_tag="Deba_0918" /note="putative molybdopterin cofactor binding site; other site" /db_xref="CDD:30314" gene complement(1038879..1039289) /locus_tag="Deba_0919" /db_xref="GeneID:9493371" CDS complement(1038879..1039289) /locus_tag="Deba_0919" /note="COGs: COG3576 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase; InterPro IPR009002:IPR011576; KEGG: sat:SYN_02719 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Q2LRW1 Flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase-related FMN-binding protein" /protein_id="YP_003806883.1" /db_xref="GI:302342354" /db_xref="GeneID:9493371" /translation="MAKMNEKIRKMFQGLVTVVLATADKNGAPNAVPVNAKAALDDET IVISDQFFNKTLANVKENPQVSVSFWEGMNGYQLKGKAQIVTEGPVYETMAAAVKAKG EERGIVLRSKGVLVIKIDDIFYTTPGPKAGQRVE" misc_feature complement(1038885..1039289) /locus_tag="Deba_0919" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" gene complement(1039309..1039965) /locus_tag="Deba_0920" /db_xref="GeneID:9493372" CDS complement(1039309..1039965) /locus_tag="Deba_0920" /note="COGs: COG4887 Uncharacterized metal-binding protein; InterPro IPR014997; KEGG: dal:Dalk_4328 protein of unknown function DUF1847; PFAM: Protein of unknown function DUF1847; SPTR: B8FMH0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1847)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806884.1" /db_xref="GI:302342355" /db_xref="GeneID:9493372" /translation="MSDEQTACSYCAKKKCFFGDFSTAPPDCPTITRQAELEYSRQKL AEPENQRMAQDVARTWKDYGRLTRVEETVLYARLRGFKKLGVAFCVGLSEEAEKFTNL LRNEGFEVASACCMFGGFSSDDVDLPVEDKAFGGGRQPMCNPIGQARLLDEAGCELNI ILGLCVGDDTLFIKHSQAPVTVLAVKDRVLAHNPLGALYTARNIYTRLKVKRPKTDKP " misc_feature complement(1039417..1039884) /locus_tag="Deba_0920" /note="Protein of unknown function (DUF1847); Region: DUF1847; cl02037" /db_xref="CDD:194231" gene complement(1040131..1040625) /locus_tag="Deba_0921" /db_xref="GeneID:9493373" CDS complement(1040131..1040625) /locus_tag="Deba_0921" /note="KEGG: dba:Dbac_0543 hypothetical protein; SPTR: C7LWH5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3124)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806885.1" /db_xref="GI:302342356" /db_xref="GeneID:9493373" /translation="MMNFWGSIMRHCTRALLAALLTLTVWLPAQAQPQTSSGQLVYVP AYSHIYHGDKPNEFLLTITISVRNADPWRPLELTMLEYRGSDGRVLKSFLDKPLSIAP LAATRFVVAESDAHGGSGACFLVRWRAGQPINQPVIQAVMIGARANQGISFICEGQPL VEAK" misc_feature complement(1040146..1040520) /locus_tag="Deba_0921" /note="Protein of unknown function (DUF3124); Region: DUF3124; pfam11322" /db_xref="CDD:151763" gene complement(1040634..1041452) /locus_tag="Deba_0922" /db_xref="GeneID:9493374" CDS complement(1040634..1041452) /locus_tag="Deba_0922" /EC_number="3.2.2.23" /note="COGs: COG0266 formamidopyrimidine-DNA glycosylase; InterProIPR012319:IPR010979:IPR015886:IPR010663:IPR 015887:IPR000214:IPR000191; KEGG: sti:Sthe_0785 formamidopyrimidine-DNA glycosylase; PFAM: formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; zinc finger Fpg domain protein; PRIAM: DNA-formamidopyrimidine glycosylase; SPTR: D1C1V5 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: formamidopyrimidine-DNA glycosylase H2TH domain; formamidopyrimidine-DNA glycosylase N-terminal domain; Zinc finger found in FPG and IleRS; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg)" /codon_start=1 /transl_table=11 /product="formamidopyrimidine-DNA glycosylase" /protein_id="YP_003806886.1" /db_xref="GI:302342357" /db_xref="GeneID:9493374" /translation="MPELPEVECVRRTLEPAVLGRAIVAVQINYAKAVLPDARAFADG LGGKSITATARHGKLLILGLDQGAFMTIHLRMTGQVIVADQAPQADHIHARIDLDDGQ SLFYRDMRKFGRLNYCPDAQALQNGPLANMGPDALELEAEAFATLVGARGGKLKNVLL DQRVLAGVGNIYADESLHRAGLSPLADPRALSADDLDRLHRALRQTLLEALEQGGSSV RNFMDAHGRAGTFQHSHRVYRRTGQPCPVCGQPVERIVVAGRGTHFCPACQEKC" misc_feature complement(1040646..1041452) /locus_tag="Deba_0922" /note="formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated; Region: PRK01103" /db_xref="CDD:179222" misc_feature complement(1041096..1041449) /locus_tag="Deba_0922" /note="N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases; Region: EcFpg-like_N; cd08966" /db_xref="CDD:176800" misc_feature complement(order(1041117..1041128,1041180..1041185, 1041222..1041230,1041234..1041236,1041279..1041281, 1041444..1041449)) /locus_tag="Deba_0922" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176800" misc_feature complement(1041447..1041449) /locus_tag="Deba_0922" /note="catalytic residue [active]" /db_xref="CDD:176800" misc_feature complement(order(1041222..1041224,1041279..1041290, 1041417..1041419,1041426..1041431,1041435..1041446)) /locus_tag="Deba_0922" /note="H2TH interface [polypeptide binding]; other site" /db_xref="CDD:176800" misc_feature complement(order(1041279..1041281,1041444..1041446)) /locus_tag="Deba_0922" /note="putative catalytic residues [active]" /db_xref="CDD:176800" misc_feature complement(1041234..1041236) /locus_tag="Deba_0922" /note="turnover-facilitating residue; other site" /db_xref="CDD:176800" misc_feature complement(order(1041117..1041119,1041123..1041125, 1041225..1041227)) /locus_tag="Deba_0922" /note="intercalation triad [nucleotide binding]; other site" /db_xref="CDD:176800" misc_feature complement(1041222..1041224) /locus_tag="Deba_0922" /note="8OG recognition residue [nucleotide binding]; other site" /db_xref="CDD:176800" misc_feature complement(order(1041120..1041122,1041180..1041182)) /locus_tag="Deba_0922" /note="putative reading head residues; other site" /db_xref="CDD:176800" misc_feature complement(1040787..>1040993) /locus_tag="Deba_0922" /note="Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831" /db_xref="CDD:115485" misc_feature complement(1040643..1040729) /locus_tag="Deba_0922" /note="Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827" /db_xref="CDD:148438" gene 1041628..1041849 /locus_tag="Deba_0923" /db_xref="GeneID:9493375" CDS 1041628..1041849 /locus_tag="Deba_0923" /note="KEGG: fno:Fnod_1360 hypothetical protein; SPTR: A7HMS4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806887.1" /db_xref="GI:302342358" /db_xref="GeneID:9493375" /translation="MADLQKMKDACPNYKANLAQCTCSYGSCDKTGLCCQCVSYHRKA GQIPGCFFSAEGEASYDRSYANFCRDIGR" gene 1041871..1042836 /locus_tag="Deba_0924" /db_xref="GeneID:9493376" CDS 1041871..1042836 /locus_tag="Deba_0924" /note="InterPro IPR003018; KEGG: sfu:Sfum_1918 hypothetical protein; PFAM: GAF domain protein; SMART: GAF domain protein; SPTR: A0LJK1 Putative uncharacterized protein; PFAM: GAF domain" /codon_start=1 /transl_table=11 /product="phytochrome sensor protein" /protein_id="YP_003806888.1" /db_xref="GI:302342359" /db_xref="GeneID:9493376" /translation="MDSRRELSDAIELLADIVEAFTAALFVRQPGEEGLRAVAWHSLG KSFRHDEMIKPGEGLVGYAAKHGQIIDVDRHRVSSDATGIYADDEDIKALLVMPVSDF GVLAVDIKSRPVFGEREKKTVRDFAKFFANMMLHHDVCCREAMYGRILDLLYEVENAS LTLGEAREFYRAVLDAGRRYTGLPMGLLCLLHPGRRQFTVEAVDGPSLSTLRGRSFPV SQGLIGLVMRKANPLCHNKLKPLKGKSYLVSPDEQIRGYNAFLGVPLISWKRLIGVWA FAGSTERVVDEEELRALQLAGHRVAATIEHCGLCQGVGPTPGGLS" misc_feature 1041889..1042263 /locus_tag="Deba_0924" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 1042312..1042788 /locus_tag="Deba_0924" /note="FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203" /db_xref="CDD:32385" misc_feature 1042372..1042782 /locus_tag="Deba_0924" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" gene 1042849..1043874 /locus_tag="Deba_0925" /db_xref="GeneID:9493377" CDS 1042849..1043874 /locus_tag="Deba_0925" /note="COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: sfu:Sfum_1917 rod shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SPTR: A0LJK0 Rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family" /codon_start=1 /transl_table=11 /product="cell shape determining protein, MreB/Mrl family" /protein_id="YP_003806889.1" /db_xref="GI:302342360" /db_xref="GeneID:9493377" /translation="MLFDKLIGLFAKDMAMDLGTANTLIFIKGQGVVLNEPSVVAVQR GTGKTVAVGHMAKEYLGRTNPSIIASRPLRDGVIADFDMTRIMIKEFVTQVRSMAGLV RPRMLIGVPSGVTQVEKRAVIESAEQAGARDVFLIEEPMAAAIGANLPIGEPRGSMII DIGGGTTEVAVIAMYSTVYSESVRVAGDEANEAVMRYVQKKYQMQIGENTAEQIKINI GSAFALDNPLTMDINGKDVVQGIPKMVTVNDAEIREAMSEPVSVIIDSVRRAFEKTPP ELAADVAEQGLVLAGGGALIRGLDKLLSKELKMKVHVADDPLTSVVMGAGIALNNMRH YRRVFIN" misc_feature 1042867..1043868 /locus_tag="Deba_0925" /note="rod shape-determining protein MreB; Provisional; Region: PRK13927" /db_xref="CDD:184401" misc_feature 1043323..1043781 /locus_tag="Deba_0925" /note="Cell division protein FtsA; Region: FtsA; cl11496" /db_xref="CDD:196250" gene 1043925..1044089 /locus_tag="Deba_0926" /db_xref="GeneID:9493378" CDS 1043925..1044089 /locus_tag="Deba_0926" /note="KEGG: dat:HRM2_18580 hypothetical protein; SPTR: C0QBU8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806890.1" /db_xref="GI:302342361" /db_xref="GeneID:9493378" /translation="MEDRVSCFGHFDREDVICLVHCALHFECAAAREQSQAHRFFDES LETMPLAYSA" gene complement(1044077..1045072) /locus_tag="Deba_0927" /db_xref="GeneID:9493379" CDS complement(1044077..1045072) /locus_tag="Deba_0927" /note="KEGG: hoh:Hoch_4871 hypothetical protein; SPTR: A6G4G1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806891.1" /db_xref="GI:302342362" /db_xref="GeneID:9493379" /translation="MSPRAWLPAALIWLLAAAWPAVGAAADITVQADNARLAQHTRQS VAQLAPRLAQWTGASPRRIVVSVIADNDAFARRMEQLGAPAWADGLALPLRGEIVIKS PALLGGAEQFDHVLAHELMHLHLAPAMGGRRLPLWLEEGLAMILSGETAWGRAPTMAG GVLADQLPPLGALAEGFPAEEGAAALAYAQSYYFVSWFLNNHGDAALRQVLAGLAHGL EPSAAFMVACGRSLAGLEKQFRQDMAERFSWLALLTAGGTLWALFSLLAGAGLVWRRR RQKARRQGMDESHWRALHGPGGRCWPPPEPRADVLGEAGQNASRPPGGGVDDQAL" gene complement(1045069..1045356) /locus_tag="Deba_0928" /db_xref="GeneID:9493380" CDS complement(1045069..1045356) /locus_tag="Deba_0928" /note="COGs: COG1872 conserved hypothetical protein; InterPro IPR003746; KEGG: dae:Dtox_1088 protein of unknown function DUF167; PFAM: protein of unknown function DUF167; SPTR: C8W4A6 Putative uncharacterized protein; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: conserved hypothetical protein TIGR00251" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806892.1" /db_xref="GI:302342363" /db_xref="GeneID:9493380" /translation="MLQIKDENGGLSFAVRVSPRASRDQLAGEEGGALKVRLCAPPVD GQANEALLRLVAKALSLPRRDVSLASGPRSRQKRLLVKGLGREQLLARLGL" misc_feature complement(1045108..1045335) /locus_tag="Deba_0928" /note="Uncharacterised ACR, YggU family COG1872; Region: DUF167; cl00811" /db_xref="CDD:193945" gene complement(1045369..1045872) /locus_tag="Deba_0929" /db_xref="GeneID:9493381" CDS complement(1045369..1045872) /locus_tag="Deba_0929" /note="InterPro IPR007793:IPR019933; KEGG: dsa:Desal_2401 DivIVA family protein; PFAM: DivIVA family protein; SPTR: C0GMA7 DivIVA family protein; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain" /codon_start=1 /transl_table=11 /product="DivIVA domain protein" /protein_id="YP_003806893.1" /db_xref="GI:302342364" /db_xref="GeneID:9493381" /translation="MKGEDIDRKGFSKRLRGYSPQEVDAFISQVGEFARGLESQLAQA QGELAEARAELKDLRARDHTLEAALNQAREMADEIKANAERESQLLVAEAELQAEKIL SQAHNRLAQIHDDIGELKRQRVQFEVRLRSLVEAHMKLLDVELDRDRELADLEDKIKI LRSPASK" misc_feature complement(1045480..1045863) /locus_tag="Deba_0929" /note="DivIVA protein; Region: DivIVA; pfam05103" /db_xref="CDD:147333" misc_feature complement(1045783..1045863) /locus_tag="Deba_0929" /note="DivIVA domain; Region: DivI1A_domain; TIGR03544" /db_xref="CDD:163317" misc_feature complement(<1045501..1045662) /locus_tag="Deba_0929" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" gene complement(1046038..1046114) /locus_tag="Deba_R0019" /db_xref="GeneID:9493382" tRNA complement(1046038..1046114) /locus_tag="Deba_R0019" /product="tRNA-Pro" /db_xref="GeneID:9493382" gene complement(1046161..1046787) /locus_tag="Deba_0930" /db_xref="GeneID:9493383" CDS complement(1046161..1046787) /locus_tag="Deba_0930" /note="InterPro IPR015797:IPR000086; KEGG: rde:RD1_0410 hydrolase, PFAM: NUDIX hydrolase; SPTR: Q16D17 Hydrolase, PFAM: NUDIX domain" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_003806894.1" /db_xref="GI:302342365" /db_xref="GeneID:9493383" /translation="MDELYTTRLLAVGKALQEALAWRRPLEIANGKGRPAGVLMPLWD DGQAVQMIFTKRSSELPQHAGQVSFPGGMSERGDRDLAHTALRETNEEIGVPMDQIKV LSRLDQLQTITGFVVTPFLGLVASGATFQVNPVEVDRLLLAPLAKVLDRNNYRQMEVD WDGMKFCQMALPHDGDVIWGATFRMLQNFVESLGGRVEAIIAAAGGRA" misc_feature complement(1046221..1046688) /locus_tag="Deba_0930" /note="Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative...; Region: CoAse; cd03426" /db_xref="CDD:72884" misc_feature complement(order(1046443..1046445,1046524..1046529, 1046569..1046571,1046590..1046592,1046620..1046622)) /locus_tag="Deba_0930" /note="putative active site [active]" /db_xref="CDD:72884" misc_feature complement(order(1046443..1046445,1046527..1046529, 1046569..1046571,1046590..1046592,1046620..1046622)) /locus_tag="Deba_0930" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:72884" misc_feature complement(1046503..1046574) /locus_tag="Deba_0930" /note="nudix motif; other site" /db_xref="CDD:72884" misc_feature complement(1046524..1046526) /locus_tag="Deba_0930" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:72884" gene 1047042..1047974 /locus_tag="Deba_0931" /db_xref="GeneID:9493384" CDS 1047042..1047974 /locus_tag="Deba_0931" /note="COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: bvu:BVU_2240 hydrolase; SPTR: C6Z5F9 Metal-dependent hydrolase; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="Metal-dependent hydrolase of the beta-lactamase superfamily I" /protein_id="YP_003806895.1" /db_xref="GI:302342366" /db_xref="GeneID:9493384" /translation="MELCFLGTGGAWGLPEHACPCATCRRMRALGQHRGRAGLWLSTA AGGVLIDPGPDLRAQLMANDLPRPDAVLISHEHGDHFLGLDDLLCFRRAVAKDQWRPI PTYASEATWAAVEQRFGYLLPSLLEKRLCRPGQALEGAPMGPELACTPIKVDHGPFPK GALGFVFDLRQDGRSLRLGYTGDMLRPQDDPDAFAGLDVLVCQCAFLNEPAVNLANHL SLQAALPMLRRWTPGRVYFVHFTCQDVTPGDQAGNAAIKRRAPAQPLCRPDGQPHAIP QDQESWQATISQVLAEAGLSCQGFAAFDGLRVRL" misc_feature 1047042..1047764 /locus_tag="Deba_0931" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(1047985..1048545) /locus_tag="Deba_0932" /db_xref="GeneID:9493385" CDS complement(1047985..1048545) /locus_tag="Deba_0932" /note="KEGG: nfa:nfa15900 hypothetical protein; SPTR: Q5YZF5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806896.1" /db_xref="GI:302342367" /db_xref="GeneID:9493385" /translation="MTVGKRAAGAALALAALLSLGCAGKSTITSKTTHPDGSVTETIQ ELTDEAAFVQAQQAALRPILRLTASDPDKSIELKNIREMEVYGGGGSQIQQYHHPGWD VLKTAFGVAGTVAGVYVAGESAVRLVGAVGAAGGSTITGSFNASGDQSGTIHAPGQAS AATISPSDRHDTTSSDSHDSQALSAP" gene complement(1048545..1048682) /locus_tag="Deba_0933" /db_xref="GeneID:9493386" CDS complement(1048545..1048682) /locus_tag="Deba_0933" /note="KEGG: afu:AF0367 oxalate/formate antiporter (OxlT-2); SPTR: O29880 Oxalate/formate antiporter (OxlT-2)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806897.1" /db_xref="GI:302342368" /db_xref="GeneID:9493386" /translation="MLAWIKQHKKIVAAIVAGLAAGAGALGYACPEPLARLWALMLEG L" gene complement(1048694..1049236) /locus_tag="Deba_0934" /db_xref="GeneID:9493387" CDS complement(1048694..1049236) /locus_tag="Deba_0934" /note="COGs: COG3926 Putative secretion activating protein; InterPro IPR008565:IPR018537; KEGG: pde:Pden_4087 hypothetical protein; PFAM: peptidoglycan binding domain; protein of unknown function DUF847; SPTR: A1B9F9 Putative uncharacterized protein; PFAM: Predicted peptidoglycan domain; Predicted lysozyme (DUF847)" /codon_start=1 /transl_table=11 /product="peptidoglycan binding domain protein" /protein_id="YP_003806898.1" /db_xref="GI:302342369" /db_xref="GeneID:9493387" /translation="MIDSRLQPFAQRYKQGFLWAVGFTLAQEGWATISQHQADSGGPT RWGIARAHHPEAWRFGPPSLAQALAIYHRHYWRVVGGEELPAPLAVTLMDSAVLLGPD RPTRWLQEALGVAIDGVIGPRSIASAKAHANPHVLAGALIWRRMAAHAQRVAAKPDQA VFITGWTRRCAALWAFSQKT" misc_feature complement(1048946..1049170) /locus_tag="Deba_0934" /note="Predicted lysozyme (DUF847); Region: DUF847; pfam05838" /db_xref="CDD:147798" misc_feature complement(1048730..1048930) /locus_tag="Deba_0934" /note="Predicted Peptidoglycan domain; Region: PG_binding_3; pfam09374" /db_xref="CDD:117916" gene 1049407..1049814 /locus_tag="Deba_0935" /db_xref="GeneID:9493388" CDS 1049407..1049814 /locus_tag="Deba_0935" /note="KEGG: chu:CHU_2908 ribonucleoprotein-like; SPTR: Q11R14 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806899.1" /db_xref="GI:302342370" /db_xref="GeneID:9493388" /translation="MNYSLIIALCVAALAVAVVLSGFSALAWFKSRGAAQRAVELLRL ADEKHKASLEIYAQASLRARVAHELLSMGPVYGALLAGVAADPDAAQQIAELLGQMQK SQIGPEVERMGQLDAQYLSELQAMLKSLGLKDA" gene 1049912..1051342 /locus_tag="Deba_0936" /db_xref="GeneID:9493389" CDS 1049912..1051342 /locus_tag="Deba_0936" /EC_number="3.3.1.1" /note="COGs: COG0499 S-adenosylhomocysteine hydrolase; InterPro IPR016040:IPR000043:IPR015878:IPR020082; KEGG: dal:Dalk_2505 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: B8FFD8 Adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase" /codon_start=1 /transl_table=11 /product="adenosylhomocysteinase" /protein_id="YP_003806900.1" /db_xref="GI:302342371" /db_xref="GeneID:9493389" /translation="MNAEAARKGEAPLAYKVKDIALADWGRKEIEIAEQEMPGLMATR EKYGPQKPLAGARISGSLHMTIQTAVLIETLVALGADVRWASCNIFSTQDHAAAAIAA AGVPVFAWKGETLEEYWWCTMQALTWPDGQGPNLVVDDGGDATLLIHKGYYAEKNPAL LDEPTDDKELKCVIDVLRRMQAQNPRHWHGVVADWKGVSEETTTGVHRLYHMAEQNQL LVPAINVNDSVTKSKFDNIYGCRESLVDGIKRATDVMVAGKQALVCGYGDVGKGSAES LAAHKARVSVTEIDPICALQALMAGFRVITVEDALPFADIYVTATGNRDIITAEHMAG MKDQAIVCNIGHFDNEIQVDRLNAWPGVKKINIKPQVDKYVFADGHCIYLLAEGRLVN LGCATGHPSFVMSNSFTNQTLAQIDLWQNRRAVGVYTLSKQLDEEVARLHLGKLGARL TKLSPEQAAYIGVGVDGPFKSEFYRY" misc_feature 1049954..1051339 /locus_tag="Deba_0936" /note="Adenosylhomocysteinase; Provisional; Region: PTZ00075" /db_xref="CDD:185430" misc_feature 1049969..1051315 /locus_tag="Deba_0936" /note="S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado...; Region: AdoHcyase; cd00401" /db_xref="CDD:29522" misc_feature order(1049993..1049995,1050014..1050019,1050530..1050532, 1050539..1050544,1050590..1050592,1050596..1050598, 1050611..1050613,1050623..1050625,1050632..1050637, 1050656..1050661,1050668..1050670,1050674..1050688, 1050749..1050754,1050773..1050799,1050803..1050814, 1050821..1050826,1050875..1050886,1050917..1050925, 1050956..1050958,1051007..1051009,1051100..1051102, 1051118..1051120,1051196..1051198,1051238..1051240, 1051247..1051252,1051256..1051264,1051268..1051270, 1051277..1051282,1051289..1051294) /locus_tag="Deba_0936" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:29522" misc_feature order(1050098..1050100,1050104..1050106,1050110..1050112, 1050329..1050331,1050512..1050517,1050602..1050604, 1050614..1050616,1051106..1051108) /locus_tag="Deba_0936" /note="active site" /db_xref="CDD:29522" misc_feature order(1050515..1050523,1050617..1050619,1050704..1050706, 1050710..1050718,1050770..1050778,1050869..1050874, 1050887..1050889,1050941..1050949,1051079..1051081, 1051085..1051087,1051106..1051108) /locus_tag="Deba_0936" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:29522" gene complement(1051513..1052676) /locus_tag="Deba_0937" /db_xref="GeneID:9493390" CDS complement(1051513..1052676) /locus_tag="Deba_0937" /EC_number="2.5.1.6" /note="COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: dal:Dalk_3253 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: B8FJ16 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine synthetase" /protein_id="YP_003806901.1" /db_xref="GI:302342372" /db_xref="GeneID:9493390" /translation="MGSNYMFTSESVTEGHPDKVADQISDAILDAMLTDDPESRVACE TLVTTGMAIVAGEVTTKTYVDIPQIVRGTIREIGYSNSSMGFDWETCAVMTSLDKQSP DIAMGVDADTAMFGEQGAGDQGLMFGYACDETPELMPMPIYYAHKLARRLAAVRKNGS LGFLRPDGKTQVTIEYEDDRPKRVEAVVVAAQHSPDVKQERLREAIIEEVVRKILPAE MIDGDTKMFINTTGRFVVGGPHGDCGLTGRKIIVDTYGGQGSHGGGCFSGKDPSKVDR SGSYFSRYVAKNIVAAGLARKCEVQIAYAIGVPQPVSILVHTYGTETVDNDRIVAAVR KVFDFRPAMMIQKLQLKQPMYRRTAAYGHFGREEDGGFTWERRDMVEALKAAV" misc_feature complement(1051516..1052670) /locus_tag="Deba_0937" /note="S-adenosylmethionine synthetase; Validated; Region: PRK05250" /db_xref="CDD:179974" misc_feature complement(1052371..1052664) /locus_tag="Deba_0937" /note="S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438" /db_xref="CDD:189548" misc_feature complement(1051975..1052331) /locus_tag="Deba_0937" /note="S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772" /db_xref="CDD:190418" misc_feature complement(1051549..1051971) /locus_tag="Deba_0937" /note="S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773" /db_xref="CDD:111646" gene complement(1052837..1053226) /locus_tag="Deba_0938" /db_xref="GeneID:9493391" CDS complement(1052837..1053226) /locus_tag="Deba_0938" /EC_number="4.1.1.11" /note="COGs: COG0853 Aspartate 1-decarboxylase; InterPro IPR009010:IPR003190; KEGG: drm:Dred_1790 aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: A4J5G2 L-aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase" /codon_start=1 /transl_table=11 /product="aspartate 1-decarboxylase" /protein_id="YP_003806902.1" /db_xref="GI:302342373" /db_xref="GeneID:9493391" /translation="MHRWMMKSKIHRATVTQADLNYEGSITVDQELLDAAEIIPHEMV QVYNVNTGSRFETYVIPGEPGSRVICLNGAAARMAQIGDLVILVTTAWLNEAELVNYE PKVVLVGEGNEIKRVYSDAKLALRRIK" misc_feature complement(1052891..1053223) /locus_tag="Deba_0938" /note="Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production; Region: Asp_decarbox; cd06919" /db_xref="CDD:132994" misc_feature complement(order(1052924..1052926,1052951..1052959, 1052969..1052971,1052993..1052998,1053002..1053007, 1053053..1053067,1053071..1053073,1053080..1053082, 1053086..1053088,1053098..1053103,1053110..1053112, 1053116..1053118,1053158..1053169,1053191..1053196, 1053200..1053202,1053206..1053223)) /locus_tag="Deba_0938" /note="tetramerization interface [polypeptide binding]; other site" /db_xref="CDD:132994" misc_feature complement(order(1053053..1053055,1053152..1053157, 1053194..1053196,1053200..1053202)) /locus_tag="Deba_0938" /note="active site" /db_xref="CDD:132994" gene complement(1053235..1054089) /locus_tag="Deba_0939" /db_xref="GeneID:9493392" CDS complement(1053235..1054089) /locus_tag="Deba_0939" /EC_number="6.3.2.1" /note="COGs: COG0414 Panthothenate synthetase; InterPro IPR003721:IPR014729; KEGG: sat:SYN_00420 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Q2LSQ5 Pantothenate synthetase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase" /codon_start=1 /transl_table=11 /product="pantoate/beta-alanine ligase" /protein_id="YP_003806903.1" /db_xref="GI:302342374" /db_xref="GeneID:9493392" /translation="MPSEPTIIRTPTEMRAHGHALRAAGKRIGFVPTMGALHAGHLSL IDYVRQECDVVVASIFVNPLQFDRAEDLDTYPRTFEADRALCAQRGTDVIFCPTAPAM YPEGYCTKVSVSGMSGLLCGKVRTGHFDGVTTVVLKLFNAVLPHVAAFGEKDYQQLTL IKRMALDLGLDVAVVGRPTVREADGLAMSSRNVHLSPEERQRALALWRGLQKARTLAD AGQTEARVLIDAARQEIEAINPTRLEYIEIVDSTNLESLERLDRPARMAMAVWLGSTR LIDNAPLN" misc_feature complement(1053250..1054077) /locus_tag="Deba_0939" /note="Pantoate-beta-alanine ligase; Region: PanC; cd00560" /db_xref="CDD:185673" misc_feature complement(1053250..1054071) /locus_tag="Deba_0939" /note="pantoate--beta-alanine ligase; Region: panC; TIGR00018" /db_xref="CDD:161666" misc_feature complement(order(1053517..1053528,1053550..1053558, 1053619..1053621,1053628..1053633,1053637..1053642, 1053682..1053687,1053694..1053696,1053865..1053867, 1053895..1053897,1053904..1053906,1053958..1053960, 1053967..1053972,1053976..1053978,1053985..1053996)) /locus_tag="Deba_0939" /note="active site" /db_xref="CDD:185673" misc_feature complement(order(1053526..1053531,1053550..1053555, 1053619..1053621,1053628..1053633,1053637..1053642, 1053682..1053687,1053895..1053897,1053958..1053960, 1053967..1053969,1053976..1053978,1053988..1053996)) /locus_tag="Deba_0939" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:185673" misc_feature complement(order(1053619..1053621,1053673..1053675, 1053682..1053687,1053895..1053897,1053904..1053906, 1053988..1053990,1053994..1053996)) /locus_tag="Deba_0939" /note="pantoate-binding site; other site" /db_xref="CDD:185673" misc_feature complement(1053967..1053978) /locus_tag="Deba_0939" /note="HXXH motif; other site" /db_xref="CDD:185673" gene complement(1054304..1055158) /locus_tag="Deba_0940" /db_xref="GeneID:9493393" CDS complement(1054304..1055158) /locus_tag="Deba_0940" /note="COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR001737:IPR020596:IPR011530:IPR020598; KEGG: dal:Dalk_3122 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase-like; SPTR: B8FBQ9 Dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase" /codon_start=1 /transl_table=11 /product="dimethyladenosine transferase" /protein_id="YP_003806904.1" /db_xref="GI:302342375" /db_xref="GeneID:9493393" /translation="MHPRLLLERLGLHASKARGQNFLTQPATAQAIVASAAIGPEDFV VEIGPGLGALTVAAGRLASRVLAVEIDRGVHRALMDVLAEEGLQNVEARLMDALDLDW PATREQAGRPLVVIGNLPYNITSPLLFALLAAAPCWRAATLMVQKEVATRLAAKPGGK DWGRLGVMVQSLCQVRAGVTLSRGQFFPEPNVSSQIVHLTPLEQPLPAALGLSQAWFG QVVKAAFGQRRKTVANALAGGLGLERGRVEDALGRAAVAPSRRAETLSIAELGAIALA LTPPGPPN" misc_feature complement(1054328..1055158) /locus_tag="Deba_0940" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1055165..1056220) /locus_tag="Deba_0941" /db_xref="GeneID:9493394" CDS complement(1055165..1056220) /locus_tag="Deba_0941" /EC_number="3.4.24.57" /note="COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterPro IPR017861:IPR000905; KEGG: hoh:Hoch_6887 metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: D0LVN2 Metalloendopeptidase, glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: glycoprotease family; TIGRFAM: metalloendopeptidase, , glycoprotease family" /codon_start=1 /transl_table=11 /product="metalloendopeptidase, glycoprotease family" /protein_id="YP_003806905.1" /db_xref="GI:302342376" /db_xref="GeneID:9493394" /translation="MANALNNDGDPGRLVLGVESSCDETAAAVVEDGRRALSSVVASQ VRDHAPFGGVVPELASRRHLEAVAPVIRAALAGAGVTLGQISGLAVTQGPGLIGSLLV GLSAAKALAWARDLPIVGVSHLEGHIAALRLMDDPPAPPFAALLVSGGHTSIYHVHDF GQMEELGQTVDDAAGEAYDKVAKLYGLGYPGGVIIDRLAAGGDPTAIQLPRPRLRDGT LDFSFSGLKSAVVRFRQEHIGQNYRIEDLCAGFQEAVVEVLTSKTIAAAKQRGLTRLA LAGGVAANQRLRQAMAQAAAAAGMELTAPPVALCTDNAAMIAAAGAIRLRAGLRLALE ADAVSRLPRGGRLPGEA" misc_feature complement(1055282..1056181) /locus_tag="Deba_0941" /note="UGMP family protein; Validated; Region: PRK09604" /db_xref="CDD:181984" misc_feature complement(<1055846..1056178) /locus_tag="Deba_0941" /note="Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214; cl14000" /db_xref="CDD:189252" gene complement(1056201..1057226) /locus_tag="Deba_0942" /db_xref="GeneID:9493395" CDS complement(1056201..1057226) /locus_tag="Deba_0942" /EC_number="3.1.3.11" /note="COGs: COG0158 Fructose-1 6-bisphosphatase; InterPro IPR000146:IPR020548; KEGG: dvm:DvMF_0404 fructose-1,6-bisphosphatase; PFAM: inositol phosphatase/fructose-16-bisphosphatase; SPTR: C0GQU0 inositol phosphatase/fructose-16-bisphosphatase; PFAM: Fructose-1-6-bisphosphatase" /codon_start=1 /transl_table=11 /product="inositol phosphatase/fructose-16-bisphosphatase" /protein_id="YP_003806906.1" /db_xref="GI:302342377" /db_xref="GeneID:9493395" /translation="MTENKLGITVTNHILMQQQRHGDATGVFTRLLNELIFAAKIISA EVNRAGLAGILGATGRSNVQDEIVRKLDEFAHDLLIERLCRSSHCAVLGSEEDADPIE IPRGYNKGNYVLLFDPLDGSSNIDANVSIGTIFSILRKESPGSDYQMSDLLQPGYKQV AAGYFLYGSSTMMVYTTGNGVSGFTLEPSVGEFLLSHPDITIPERGKIFSANMGYWDY WSQGLQDYFRHLRRTTPDKPVYSCRYIGSMVADFHRTLLYGGVFLYPKDTKDPKKPHG KLRLLYECNPLAMVAEQAGGAASTGEGQRILEIQPEELHQRVPIVIGSKLDVQEAEQF ISGQRAQ" misc_feature complement(1056222..1057184) /locus_tag="Deba_0942" /note="Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-...; Region: FBPase; cd00354" /db_xref="CDD:30130" misc_feature complement(order(1056810..1056812,1056891..1056896, 1057140..1057148,1057152..1057154,1057173..1057175, 1057182..1057184)) /locus_tag="Deba_0942" /note="AMP binding site [chemical binding]; other site" /db_xref="CDD:30130" misc_feature complement(order(1056378..1056380,1056870..1056872, 1056876..1056878,1056939..1056944,1057011..1057013)) /locus_tag="Deba_0942" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:30130" misc_feature complement(order(1056396..1056398,1056435..1056437, 1056483..1056485,1056495..1056500,1056582..1056584, 1056858..1056863,1056867..1056869)) /locus_tag="Deba_0942" /note="active site" /db_xref="CDD:30130" gene complement(1057357..1058967) /locus_tag="Deba_0943" /db_xref="GeneID:9493396" CDS complement(1057357..1058967) /locus_tag="Deba_0943" /note="COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterProIPR013709:IPR000891:IPR002034:IPR013785:IPR 005675; KEGG: sfu:Sfum_2174 alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; SPTR: A0LKA4 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase/homocitrate synthase family protein" /protein_id="YP_003806907.1" /db_xref="GI:302342378" /db_xref="GeneID:9493396" /translation="MAGNPDKRVVEIYDTTLRDGTQAAGFVLSVDDKLKVAQRLDHLG VHYIEGGWPGSNPRDKQFFARAGELRLKTAKLVAFGSTHHANRRPENDQNLADLLGAG TDVVTMVGKTWDRHVTIQLGVPLERNLAMIADSVAYLSRHHIQVFFDAEHFFDGLKHN REYTLACLKAAAEGGAKCLVLCDTNGGSLPGQVAEATRLVRQTLPGLAVGVHTHNDAE LAVANSLAAVEAGASQVQGTINGVGERCGNANLCSIVAALELKMGLRALPEGRLPLLT DTARFVLELANQQPRPFAPYVGRAAFGHKGGLHISAVEKDPALYEHVSPEAVGNDRRY LISDLAGKAAILRKARDMGLDLADNDPALGRMLEELKAQENKGYVYEAAEASFELLIN RVLGREKTYFQLMDFRVHTHKEANNILGCKAPGPVSEATVMVLVDGRVRHTAAVGNGP VNALDRAMRKALLGFYPQLAEMQLVDYKVRVLSSADGTAARVRVLIESSDGRSRWGTV GVSFDVLEASWQALSESIQYKLQQDETS" misc_feature complement(1057366..1058955) /locus_tag="Deba_0943" /note="putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional; Region: PRK12344" /db_xref="CDD:183457" misc_feature complement(1058116..1058934) /locus_tag="Deba_0943" /note="Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain; Region: DRE_TIM_LeuA3; cd07941" /db_xref="CDD:163679" misc_feature complement(order(1058326..1058328,1058332..1058334, 1058422..1058424,1058515..1058517,1058725..1058727, 1058731..1058733,1058821..1058823,1058902..1058904, 1058911..1058916)) /locus_tag="Deba_0943" /note="active site" /db_xref="CDD:163679" misc_feature complement(order(1058821..1058823,1058911..1058916)) /locus_tag="Deba_0943" /note="catalytic residues [active]" /db_xref="CDD:163679" misc_feature complement(order(1058326..1058328,1058332..1058334, 1058422..1058424,1058911..1058913)) /locus_tag="Deba_0943" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163679" misc_feature complement(1057378..1057767) /locus_tag="Deba_0943" /note="LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; pfam08502" /db_xref="CDD:149524" gene complement(1058976..1060220) /locus_tag="Deba_0944" /db_xref="GeneID:9493397" CDS complement(1058976..1060220) /locus_tag="Deba_0944" /EC_number="2.7.2.4" /note="COGs: COG0527 Aspartokinase; InterProIPR001057:IPR001048:IPR002912:IPR018042:IPR 001341:IPR005260; KEGG: pca:Pcar_1006 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; SPTR: Q3A5V0 Aspartokinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase" /codon_start=1 /transl_table=11 /product="aspartate kinase" /protein_id="YP_003806908.1" /db_xref="GI:302342379" /db_xref="GeneID:9493397" /translation="MAIIVQKFGGTSVGSIEKIKNVARKVKARADQGNKMVVVLSAMA GVTDKLIALAKEVSPEPDAREMDVLLATGEQQSVALFCIAARQMGLPAHSLLGFQAAI LTDNVFGKARIKDVEAQRISEMLDQGQVVVVAGFQGLDWDSGDVTTLGRGGSDTTAVA LAAAIKADVCEIFTDVDGVYTTDPNIVPQARKLAAISYDEMLEMASLGAKVLEIRSVA FAKQFGVKIHVRSTFTDQEGTMVVSEEQITEKLVVSGVAYNKNEARITIKGVVDQPGV ASKVFTPIGAANIVVDVIIQNTSEDGKTDISFTVPKTDYDQAMRVVQATAKELGAKQV IGDPNVAKVSIIGTGMRNHAGVATKMFQVLAGEGINIETINTSEIKISCVIKEKYTEL AVRALHEAFHLAGDAPKAEDLS" misc_feature complement(1059012..1060220) /locus_tag="Deba_0944" /note="aspartate kinase; Reviewed; Region: PRK06635" /db_xref="CDD:180641" misc_feature complement(1059495..1060214) /locus_tag="Deba_0944" /note="AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive...; Region: AAK_AKii-LysC-BS; cd04261" /db_xref="CDD:58627" misc_feature complement(order(1059681..1059686,1059693..1059698, 1060188..1060196,1060200..1060202)) /locus_tag="Deba_0944" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58627" misc_feature complement(order(1059999..1060001,1060080..1060082, 1060200..1060202)) /locus_tag="Deba_0944" /note="putative catalytic residues [active]" /db_xref="CDD:58627" misc_feature complement(order(1059672..1059674,1059756..1059758, 1060080..1060082,1060098..1060100)) /locus_tag="Deba_0944" /note="putative Mg ion binding site [ion binding]; other site" /db_xref="CDD:58627" misc_feature complement(order(1059999..1060001,1060080..1060082, 1060095..1060100)) /locus_tag="Deba_0944" /note="putative aspartate binding site [chemical binding]; other site" /db_xref="CDD:58627" misc_feature complement(1059213..1059437) /locus_tag="Deba_0944" /note="ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins; Region: ACT_AKii-LysC-BS-like_1; cd04913" /db_xref="CDD:153185" misc_feature complement(1059321..1059326) /locus_tag="Deba_0944" /note="putative allosteric regulatory site; other site" /db_xref="CDD:153185" misc_feature complement(1059012..1059200) /locus_tag="Deba_0944" /note="ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains; Region: ACT_AKii-LysC-BS-like_2; cd04936" /db_xref="CDD:153208" misc_feature complement(1059198..1059200) /locus_tag="Deba_0944" /note="putative allosteric regulatory residue; other site" /db_xref="CDD:153208" gene complement(1060226..1060702) /locus_tag="Deba_0945" /db_xref="GeneID:9493398" CDS complement(1060226..1060702) /locus_tag="Deba_0945" /note="COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: sat:SYN_02780 ATP/GTP hydrolase; PFAM: protein of unknown function UPF0079; SPTR: Q2LTJ6 ATP/GTP hydrolase; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: conserved hypothetical nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806909.1" /db_xref="GI:302342380" /db_xref="GeneID:9493398" /translation="MSGDVIELLLRGEEQTLRLGLALGRVLGPGAVVLLRGGLGAGKT TLARGLARGLGVGDDYNVVSPTFTLLNVYPGPTPFFHADLYRLDLGGALDLGLLEESA EGVLAVEWAEVMDGRWPETAVDVWLTGEAGHERQARISGPAAFLDGLRGLLNIQAD" misc_feature complement(1060244..>1060534) /locus_tag="Deba_0945" /note="Uncharacterised P-loop hydrolase UPF0079; Region: UPF0079; cl00520" /db_xref="CDD:186054" gene complement(1060778..1062355) /locus_tag="Deba_0946" /db_xref="GeneID:9493399" CDS complement(1060778..1062355) /locus_tag="Deba_0946" /note="COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631:IPR017953; KEGG: dol:Dole_0775 carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; SPTR: A8ZVC4 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: carbohydrate kinase; YjeF-related protein N-terminus; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region" /codon_start=1 /transl_table=11 /product="carbohydrate kinase, YjeF related protein" /protein_id="YP_003806910.1" /db_xref="GI:302342381" /db_xref="GeneID:9493399" /translation="MILVSAKQMRLADERTINEIGLPGIVLMENAARGAAKVIVEAVG EVEGLAVAAFCGRGNNGGDGLAVLRMLAQKGAVCTAFLLAKAEQLGPDAAINLRVAEA CGVEVIELPDEDAFDLYAGEMAAYDIYVDAILGTGLSAPVEGLYLRAIEALNESDAPI LAIDMPSGLSADTGRPLGQAVRADWTATFGAVKRGLLLDFENHAGELSLVDISIPPHV FDELDIDCLLLEPQTVAALLPPRDASAHKGDFGHLLVVGGAPGYSGAPCLAAMGGLRA GAGLVTVALPAGLNIVAETKLTACMSHPLPQTATGALDVAALEDARQLMASRQALALG PGLGRAAESAQLAIALMNVIEAPLVIDADALNALAESPEPPVWAAEQVVLCPHPGEAG RLLGCQTAEIQADRLDAARRIAAKYNAVCLLKGARSVIAAPDGLAWVNDTGSPLLASG GSGDVLTGLIGGLLAQGSSALEAALCGAFIHGLAAQLAAEEFGLRGLAAEELADYLPT AFATLEAGHDHDHHDED" misc_feature complement(1061771..1062298) /locus_tag="Deba_0946" /note="YjeF-related protein N-terminus; Region: YjeF_N; cl00318" /db_xref="CDD:193767" misc_feature complement(1060838..1061629) /locus_tag="Deba_0946" /note="B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily; Region: YXKO-related; cd01171" /db_xref="CDD:29355" misc_feature complement(order(1060994..1060996,1061003..1061005, 1061552..1061554)) /locus_tag="Deba_0946" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:29355" misc_feature complement(order(1060910..1060912,1060988..1060990, 1060997..1061002,1061084..1061086,1061195..1061197)) /locus_tag="Deba_0946" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:29355" gene complement(1062352..1062729) /locus_tag="Deba_0947" /db_xref="GeneID:9493400" CDS complement(1062352..1062729) /locus_tag="Deba_0947" /note="COGs: COG0736 phosphopantetheinyl transferase (holo-ACP synthase); InterPro IPR008278:IPR001484:IPR004568:IPR002582; KEGG: plu:plu3336 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Q7N1X9 Holo-[acyl-carrier-protein] synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase" /codon_start=1 /transl_table=11 /product="holo-acyl-carrier-protein synthase" /protein_id="YP_003806911.1" /db_xref="GI:302342382" /db_xref="GeneID:9493400" /translation="MIFGLGLDLARVARFERALARFGPRLGRRCFTAAEWEQAMARPK PAAALALRWAAKEAFVKAAGLGMGRLAFTEIEVAHAAGGRPLLRLHGAVAQWARDNGG LTAHLSLTDDGDYAAAVVVLEKP" misc_feature complement(1062355..1062729) /locus_tag="Deba_0947" /note="4'-phosphopantetheinyl transferase superfamily; Region: ACPS; cl00500" /db_xref="CDD:193842" gene complement(1062732..1063490) /locus_tag="Deba_0948" /db_xref="GeneID:9493401" CDS complement(1062732..1063490) /locus_tag="Deba_0948" /EC_number="2.6.99.2" /note="COGs: COG0854 pyridoxal phosphate biosynthesis protein; InterPro IPR004569:IPR013785; KEGG: ank:AnaeK_2367 pyridoxine 5'-phosphate synthase; PFAM: pyridoxal phosphate biosynthetic protein PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: B8JBG6 pyridoxal phosphate biosynthetic protein PdxJ; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase" /codon_start=1 /transl_table=11 /product="pyridoxal phosphate biosynthetic protein PdxJ" /protein_id="YP_003806912.1" /db_xref="GI:302342383" /db_xref="GeneID:9493401" /translation="MARLSVNVDHVATLRQARGIDEPDPVWAAVLAEKAGADGIIVHL REDRRHIQDRDLRVLRQVVKGALNMEMAATEEMIGIAAEVGPQICTLVPERRQELTTE GGLEVKGNLDYMRDVIAQLNQADIEVSLFIDPHPEQVKAAHMAGAQVVELHTGAYANA AGEAARLKLLSALEDAARLAARVGMRVAAGHGLNLRNVAPLLKIPEIVEYSIGHSIVA RALFVGFESAVAEMLALVRQSAPPRQPESPARRL" misc_feature complement(1062783..1063484) /locus_tag="Deba_0948" /note="Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the...; Region: PNPsynthase; cd00003" /db_xref="CDD:58644" misc_feature complement(order(1062849..1062854,1062915..1062920, 1063038..1063040,1063098..1063100,1063179..1063181, 1063188..1063193,1063281..1063283,1063341..1063346, 1063356..1063358,1063362..1063364,1063437..1063439, 1063461..1063466,1063470..1063472)) /locus_tag="Deba_0948" /note="active site" /db_xref="CDD:58644" misc_feature complement(order(1062858..1062860,1062864..1062869, 1062918..1062920,1062927..1062929,1063038..1063040, 1063044..1063046,1063098..1063100,1063104..1063106, 1063221..1063223,1063227..1063229,1063281..1063283, 1063287..1063289,1063293..1063295,1063368..1063370, 1063470..1063472)) /locus_tag="Deba_0948" /note="hydrophilic channel; other site" /db_xref="CDD:58644" misc_feature complement(order(1063014..1063019,1063437..1063439)) /locus_tag="Deba_0948" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:58644" misc_feature complement(order(1062918..1062920,1063038..1063040, 1063281..1063283,1063362..1063364)) /locus_tag="Deba_0948" /note="catalytic residues [active]" /db_xref="CDD:58644" misc_feature complement(1063179..1063211) /locus_tag="Deba_0948" /note="active site lid [active]" /db_xref="CDD:58644" gene complement(1063471..1063893) /locus_tag="Deba_0949" /db_xref="GeneID:9493402" CDS complement(1063471..1063893) /locus_tag="Deba_0949" /note="COGs: COG0319 metal-dependent hydrolase; InterPro IPR002036:IPR020549; KEGG: pca:Pcar_1233 hypothetical protein; PFAM: protein of unknown function UPF0054; SPTR: Q1K125 Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: conserved hypothetical protein TIGR00043" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806913.1" /db_xref="GI:302342384" /db_xref="GeneID:9493402" /translation="MESRIKRICAALALAEDAELSLLICDDVEIAQINGQYLDRRGPT NVLAFAMQEGDGAGVNPQILGDVVVSIDTAQREAAENGLDPDEHFVRLIIHGLLHLLG HDHLRDEEQARAMEELTEDLLEKSAAASERICHGPTVG" misc_feature complement(1063519..>1063824) /locus_tag="Deba_0949" /note="Uncharacterized protein family UPF0054; Region: UPF0054; cl00402" /db_xref="CDD:185971" gene complement(1063847..1065559) /locus_tag="Deba_0950" /db_xref="GeneID:9493403" CDS complement(1063847..1065559) /locus_tag="Deba_0950" /note="COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR011621:IPR006674:IPR006675:IPR003607; KEGG: dol:Dole_0778 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; SMART: metal-dependent phosphohydrolase HD region; SPTR: A8ZVC7 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="7TM receptor with intracellular metal dependent phosphohydrolase" /protein_id="YP_003806914.1" /db_xref="GI:302342385" /db_xref="GeneID:9493403" /translation="MGVERPSKLRPVGAPKTHPTAAAWRARAMALIKRAWELLCQLCR TRLRERLLPKLRGAFQGPGSLHLSAPTILSAMIFGALLVDLFTHAPWPIIVGAVVLSA LVLRQLYLIWFQRLPVFGGEVSARQIIFLWCILLILAGLSRGYNLLALAMSVDHGGLA LQAMGYAVPLAAGPLLVSLFMSAQAGMLTALGFGLLASLLWPGSMALFVYYLITGVVA AHYVRSGHTRMSLIGAAAWSALSGALALAAMALVQGWLFSAAFMAALAAALLGSLLAG ILAAGMAPLAESAFGFISAPCLMELASLDHPLLQELMLQAPGTYHHSLVVGSLVEAAA KEIGANSLLAKVAALYHDLGKLRKCDYFVENQGVAPNRHEKLAPTMSALILISHVKEG VEAARRHRLGQPIIDIIGQHHGTRLIHYFYNKALECSRETGREEPNIESFRYPGPRPQ TREAGLVMLADTVEAASRSLDNPTPARIQGLVQSQINKVFAEGQLDECELTLKDLHKI AKVFNKILNGIFHHRVEYPNTDNNGPKKQNDSCDRQSTKPGGDRPDDLGIADQTNLRR LGVG" misc_feature complement(<1064888..1065289) /locus_tag="Deba_0950" /note="7TM receptor with intracellular HD hydrolase; Region: 7TM-7TMR_HD; pfam07698" /db_xref="CDD:148997" misc_feature complement(1064153..1064611) /locus_tag="Deba_0950" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature complement(order(1064177..1064179,1064504..1064509, 1064594..1064596)) /locus_tag="Deba_0950" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature complement(1064504..1064506) /locus_tag="Deba_0950" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene complement(1065564..1066520) /locus_tag="Deba_0951" /db_xref="GeneID:9493404" CDS complement(1065564..1066520) /locus_tag="Deba_0951" /note="COGs: COG1702 phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: dal:Dalk_3324 PhoH family protein; PFAM: PhoH family protein; SPTR: B8FJ86 PhoH family protein; PFAM: PhoH-like protein" /codon_start=1 /transl_table=11 /product="PhoH family protein" /protein_id="YP_003806915.1" /db_xref="GI:302342386" /db_xref="GeneID:9493404" /translation="MSELKLSFDDHEAAKVLLGSRDANLKLLAEAVGVAARSRGGVVT VDGEQAEVDLAGQVLGQLYELVRQGYPVFEMDIDFAVRILSADPKAKLKDIFLDQVYI AGKKRIITPKSLTQKAYLEAMRGHDIVFGVGPAGTGKTYLAMAMAVEYLNKGRVDRVV LCRPAVEAGEKLGFLPGDLAEKVNPYLRPLYDALHDMIDFDKAGRLMGKGVIEVAPLA FMRGRTLNASFVILDEAQNATSEQMKMFLTRLGFDSRAVITGDVTQVDLPTGTTSGLI EARRLLQGIDGIAFVDFRKRDVVRHRLVREIIRAYEQKTQTE" misc_feature complement(1065567..1066505) /locus_tag="Deba_0951" /note="Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702" /db_xref="CDD:31888" misc_feature complement(1065585..1066196) /locus_tag="Deba_0951" /note="PhoH-like protein; Region: PhoH; cl12134" /db_xref="CDD:196351" gene 1066755..1067354 /locus_tag="Deba_0952" /db_xref="GeneID:9493405" CDS 1066755..1067354 /locus_tag="Deba_0952" /note="COGs: COG1286 membrane protein required for colicin V production; InterPro IPR003825; KEGG: dal:Dalk_3649 colicin V production protein; PFAM: Colicin V production protein; SPTR: B8FGV7 Colicin V production protein; PFAM: Colicin V production protein" /codon_start=1 /transl_table=11 /product="Colicin V production protein" /protein_id="YP_003806916.1" /db_xref="GI:302342387" /db_xref="GeneID:9493405" /translation="MNASPNILDLAIVAVVGFFVVKGLMQGLVREVMGLAGVVAGLFL GLAYYGQLAALARQWLKMDAAWLDAAAFGVILLAVFALVVALGAAITSLLARVSLSPL NRLLGGGLGLLKGVLLTYLLLNMLLLIMPFNPPQQLRQSLTAPYVIQAGRALMALAPE DLLHALQEKSGLIGPGGDFAPQGQPTPMPQPTPAKEPTP" gene 1067351..1068169 /locus_tag="Deba_0953" /db_xref="GeneID:9493406" CDS 1067351..1068169 /locus_tag="Deba_0953" /note="COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518:IPR011551; KEGG: scl:sce4803 hypothetical protein; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: A9FF91 Putative uncharacterized protein mazG; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein" /codon_start=1 /transl_table=11 /product="MazG family protein" /protein_id="YP_003806917.1" /db_xref="GI:302342388" /db_xref="GeneID:9493406" /translation="MSDQHQQAALAGASFARLVALAARLRAPDGCPWDRQQTVQSSTP YILEEAYEAVDALESGDRREAMGELGDLLFQVVFQSQLAAEAGDFDARAVIEAVEAKM IRRHPHVFGQERAADAEAVLRRWSEIKRDERGASQGLLDSVPKGSAALTRAQRLGQKA ARVGFDWRGQADVLAKVAEEAAELTASADAAQREAEFGDLLFALAQWARHGKIDAEAA LRRACERFQRRFELMEAAAAGRGVSLDRLDEAALDELWREAKAALAARQGVGGK" misc_feature 1067435..1068145 /locus_tag="Deba_0953" /note="nucleoside triphosphate pyrophosphohydrolase; Reviewed; Region: mazG; PRK09562" /db_xref="CDD:181956" misc_feature 1067459..1067680 /locus_tag="Deba_0953" /note="MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345" /db_xref="CDD:193780" gene 1068304..1068732 /locus_tag="Deba_0954" /db_xref="GeneID:9493407" CDS 1068304..1068732 /locus_tag="Deba_0954" /note="InterPro IPR002322; KEGG: dat:HRM2_40490 hypothetical protein; SPTR: C0QC90 Putative uncharacterized protein; PFAM: class III cytochrome C family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806918.1" /db_xref="GI:302342389" /db_xref="GeneID:9493407" /translation="MRKSLIATITVVAFIAVAALFSMAWAQKTASGEVADVIELKDGI FKTYKQGPVSFTHLKHTVDHKVKCTDCHHGDTGAASNTWKEGDPVKKCSTCHGLKKQG KVEKLEKAFHDNCKTCHKDYNKAQGTKGAPTACKDCHAKK" misc_feature 1068451..1068720 /locus_tag="Deba_0954" /note="Heme-binding domain of the class III cytochrome C family and related proteins; Region: Cytochrom_C3; cd08168" /db_xref="CDD:173979" misc_feature order(1068472..1068474,1068481..1068483,1068505..1068507, 1068514..1068522,1068577..1068579,1068637..1068639, 1068646..1068648,1068655..1068660,1068706..1068708, 1068715..1068720) /locus_tag="Deba_0954" /note="heme-binding residues [chemical binding]; other site" /db_xref="CDD:173979" gene complement(1068864..1069052) /locus_tag="Deba_0955" /db_xref="GeneID:9493408" CDS complement(1068864..1069052) /locus_tag="Deba_0955" /note="InterPro IPR001450:IPR017900:IPR017896; KEGG: dba:Dbac_0275 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C7LUW8 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_003806919.1" /db_xref="GI:302342390" /db_xref="GeneID:9493408" /translation="MGFQVVVDADKCIGDEECVEVCPVDVYEMQDGKAVPVNEEECLG CESCVEVCEQDAITVTEV" misc_feature complement(1068867..>1069037) /locus_tag="Deba_0955" /note="dihydropyrimidine dehydrogenase subunit B; Validated; Region: PRK08318" /db_xref="CDD:181383" gene complement(1069327..1069971) /locus_tag="Deba_0956" /db_xref="GeneID:9493409" CDS complement(1069327..1069971) /locus_tag="Deba_0956" /note="InterProIPR001440:IPR011717:IPR011990:IPR019734:IPR 013026; KEGG: mta:Moth_1598 hypothetical protein; PFAM: hypothetical protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; SPTR: Q2RI35 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806920.1" /db_xref="GI:302342391" /db_xref="GeneID:9493409" /translation="MAILETPSGIPEDDFLREGLIDRLQQYLAAEPGAWHIRYNLAVA LAHDGREDEAIEQFKQVLFEAPKHLESMLNLGGLYLAKGMADMALRTFTGALTVWDLP AVRANLAVAYMQLDKLDDAERELRRALAENSKLPDAWTNLSTVLVRRQQFAEAVDAAA RALEINDGFAMAHNNKAAALLELGCEQEAKRAAARARELGYPVHPEMLARLGLA" misc_feature complement(1069570..1069857) /locus_tag="Deba_0956" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(1069627..1069632,1069639..1069644, 1069651..1069656,1069729..1069734,1069741..1069746, 1069750..1069755,1069840..1069845,1069852..1069857)) /locus_tag="Deba_0956" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1069588..1069590,1069597..1069599, 1069609..1069611,1069645..1069647,1069687..1069689, 1069696..1069698,1069708..1069710,1069744..1069746, 1069789..1069791,1069798..1069800,1069810..1069812, 1069846..1069848)) /locus_tag="Deba_0956" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(1069408..1069653) /locus_tag="Deba_0956" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(1069423..1069428,1069435..1069440, 1069447..1069452,1069528..1069533,1069540..1069545, 1069549..1069554,1069639..1069644,1069651..1069653)) /locus_tag="Deba_0956" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1069441..1069443,1069486..1069488, 1069495..1069497,1069507..1069509,1069543..1069545, 1069588..1069590,1069597..1069599,1069609..1069611, 1069645..1069647)) /locus_tag="Deba_0956" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(1070079..1070312) /locus_tag="Deba_0957" /db_xref="GeneID:9493410" CDS complement(1070079..1070312) /locus_tag="Deba_0957" /note="InterPro IPR014793:IPR011991; KEGG: dba:Dbac_0281 dissimilatory sulfite reductase D; PFAM: Dissimilatory sulfite reductase D; SPTR: C7LUX4 Dissimilatory sulfite reductase D; PFAM: Dissimilatory sulfite reductase D (DsrD)" /codon_start=1 /transl_table=11 /product="Dissimilatory sulfite reductase D" /protein_id="YP_003806921.1" /db_xref="GI:302342392" /db_xref="GeneID:9493410" /translation="MADVRSLVLEVMTKKKKRMMMNDLLKEVQKLDESVDKKSLKKET TAMIADGTLSYWSSGSTTYFDMPGNEHVAEGEH" misc_feature complement(1070109..1070273) /locus_tag="Deba_0957" /note="Dissimilatory sulfite reductase D (DsrD); Region: DsrD; pfam08679" /db_xref="CDD:149662" gene complement(1070382..1071794) /locus_tag="Deba_0958" /db_xref="GeneID:9493411" CDS complement(1070382..1071794) /locus_tag="Deba_0958" /note="COGs: COG1797 Cobyrinic acid a c-diamide synthase; InterPro IPR002586:IPR011698:IPR017929:IPR004484; KEGG: dal:Dalk_4298 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; SPTR: B8FME0 Cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="cobyrinic acid a,c-diamide synthase" /protein_id="YP_003806922.1" /db_xref="GI:302342393" /db_xref="GeneID:9493411" /translation="MAQLQPQLDLPRLAVAATRGGSGKTTLTLGLIQALKDRGLTVAP FKKGPDYIDPFWHSEAAQAPCRNLDPYMMGPAQTLASFDHHGRGFDCAVIEGNRGLYD GMDDQGSFSTAELAKLLKAPTVLTIDCAMATRTVAATVLGMKLFDPALNLAGVILNPV GTARQEGLIRRAVAQYAGLPVLGAIPRLKLDMPQRHMGLVPPQEHEQVAQALHGVARL VAAHVDIDQVWALMASAPPLPAQPKPLGLGPERPPQGQGPRIGVIRDAAFGFYYAENL EALANHGARLVFCSALEDAELPPVEALYIGGGFPETHAARLAANQSFRRSVLAAAEGG LPIYAECGGLMYLGRKLLIDGREHDMVGVFPVDFAMQPKPQGHGYSLCQVLAANPFLP VGARFQAHEFHYSRPQFADATRLSLAYEVIRGRGLHEGKGGLLHKNVMATYHHVHALG LPQWAAGLVNAARSGGSIWA" misc_feature complement(1070406..1071764) /locus_tag="Deba_0958" /note="cobyrinic acid a,c-diamide synthase; Validated; Region: PRK01077" /db_xref="CDD:179218" misc_feature complement(1071228..>1071572) /locus_tag="Deba_0958" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature complement(1070418..1071011) /locus_tag="Deba_0958" /note="Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase; Region: GATase1_CobB; cd03130" /db_xref="CDD:153224" misc_feature complement(order(1070448..1070450,1070454..1070456, 1070772..1070774)) /locus_tag="Deba_0958" /note="catalytic triad [active]" /db_xref="CDD:153224" gene complement(1071890..1072975) /locus_tag="Deba_0959" /db_xref="GeneID:9493412" CDS complement(1071890..1072975) /locus_tag="Deba_0959" /EC_number="1.8.99.1" /EC_number="1.8.99.3" /note="COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and subunit betas; InterProIPR005117:IPR006067:IPR001450:IPR017900:IPR 017896:IPR011808; KEGG: sfu:Sfum_4043 sulfite reductase, dissimilatory-type subunit beta; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Hydrogensulfite reductase; SPTR: A0LQK7 Sulfite reductase, dissimilatory-type subunit beta; TIGRFAM: sulfite reductase, dissimilatory-type subunit beta; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: sulfite reductase, dissimilatory-type subunit beta" /codon_start=1 /transl_table=11 /product="dissimilatory sulfite reductase subunit beta" /protein_id="YP_003806923.1" /db_xref="GI:302342394" /db_xref="GeneID:9493412" /translation="MAEMVANRITDIGPPKYDEMWPEIIKNNYGKWLHHEILEPGVLV HVAESGDKLYTVRCGATRLMTTHMVEDYCKIADEFCGGYFRFTTRNNVEFMVTSTEKL EGLKKALAAAGNMPIGGTGHSVTNIVHTQGWVHCHTPAIDASGPVKSVMDALFDYFTS MKLPAQVRIALACCLNMCGAVHCSDIAILGVHRKPPVIEHSHLDKMCEIPTTIASCPT AAIKPSKVDDFKSVAVNADRCMYCGNCYTMCPAMPLADADGDGIAIMVGGKVSNSKCM PKFSKLAIPYIPNEPPRWESTVKAITTILEAYVSGAKRYERIGEWIERIGWERFFDVT GFEFTKRHIDDYRFAATTWRTSTQFKW" misc_feature complement(1071893..1072906) /locus_tag="Deba_0959" /note="sulfite reductase, dissimilatory-type beta subunit; Region: dsrB; TIGR02066" /db_xref="CDD:131121" misc_feature complement(<1072691..1072834) /locus_tag="Deba_0959" /note="Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460" /db_xref="CDD:190643" gene complement(1073023..1074294) /locus_tag="Deba_0960" /db_xref="GeneID:9493413" CDS complement(1073023..1074294) /locus_tag="Deba_0960" /EC_number="1.8.99.1" /EC_number="1.8.99.3" /note="COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and subunit betas; InterPro IPR006067:IPR011806; KEGG: dal:Dalk_4301 sulfite reductase, dissimilatory-type subunit alpha; PFAM: nitrite and sulphite reductase 4Fe-4S region; PRIAM: Hydrogensulfite reductase; SPTR: Q93EU9 Dissimilatory sulfite reductase subunit alpha (Fragment); TIGRFAM: sulfite reductase, dissimilatory-type subunit alpha; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; TIGRFAM: sulfite reductase, dissimilatory-type subunit alpha" /codon_start=1 /transl_table=11 /product="dissimilatory sulfite reductase subunit alpha" /protein_id="YP_003806924.1" /db_xref="GI:302342395" /db_xref="GeneID:9493413" /translation="MAIKHPTPMLDELEKGPWPSFVTDIKRAAEAGKEACADLLGQLE LSYNDKEGHWKHGGIVGVLGYGGGVIGRYSDVPNLFPGVEHFHTVRVNQPASKFYKTE RLREIMDIWNRRGSSMLNMHGSTGDIILLGAFTEQLEPIFAELTQKGWDLGGSGSALR TPECCLGKARCEWACIDTQDICYNLTQEYQDEMHRPAWPYKFKFKISGCPNDCVASIA RSDCSIIGTWRDDIRIDQAAVAAYAGGEIPARGGAMGQGVKLDVQKDVVELCPTGCMS YEGGKLAINNRECTRCMHCINLMPKALRPGTDTGATILVGAKAPILEGAQLSSVIIPF IKMEEPYDEFKEFVANTWDWWDENGKNRERIGETIQRLGLQSYLDALGFDPVPQMVKE PRSNPYFFYTEDEVPGGFDRDIEVFRKKHAR" misc_feature complement(1073050..1074267) /locus_tag="Deba_0960" /note="sulfite reductase, dissimilatory-type alpha subunit; Region: dsrA; TIGR02064" /db_xref="CDD:162679" gene 1074616..1074885 /locus_tag="Deba_0961" /db_xref="GeneID:9493414" CDS 1074616..1074885 /locus_tag="Deba_0961" /note="KEGG: gyc:GYMC61_2168 protein of unknown function DUF955; SPTR: C9S113 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806925.1" /db_xref="GI:302342396" /db_xref="GeneID:9493414" /translation="MIAENDPTIEANFQRVLGLIRAQGVEQWTEGKIGAPDLPGLIYL CKFGFMTAVLTKGQIAQILGLDRAELRAMVKGWYDDHRRKGCGAC" gene complement(1074882..1075592) /locus_tag="Deba_0962" /db_xref="GeneID:9493415" CDS complement(1074882..1075592) /locus_tag="Deba_0962" /note="COGs: COG2930 conserved hypothetical protein; InterPro IPR007461; KEGG: xac:XAC4219 hypothetical protein; PFAM: protein of unknown function DUF500; SPTR: Q8PEX1 Putative uncharacterized protein; PFAM: Family of unknown function (DUF500)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806926.1" /db_xref="GI:302342397" /db_xref="GeneID:9493415" /translation="MTRKFLTALATLAVLALTALAPGCATPTFVSNAHDAELVVRRAH LVLLEAAEAPDADAARYLLRRAKAVAIFPGTLRVGLIFGGKLGMGVVLVRQADGAWSP PAFFHMGAASIGFQAGAQSADLLMVIMTDKGLSGVMRNKLQLGVDASAAAGPLGRQTE ASLAAANMRADVYSYSRAQGLFAGASLQSVVIEADAEADDLYYNADASNEDILNNRIG DAPASAAELRQALARLSD" misc_feature complement(1074891..1075271) /locus_tag="Deba_0962" /note="Family of unknown function (DUF500); Region: DUF500; cl01109" /db_xref="CDD:194038" gene complement(1075582..1076325) /locus_tag="Deba_0963" /db_xref="GeneID:9493416" CDS complement(1075582..1076325) /locus_tag="Deba_0963" /note="InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ami:Amir_6259 NB-ARC domain protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: C6WIY7 NB-ARC domain protein; PFAM: Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806927.1" /db_xref="GI:302342398" /db_xref="GeneID:9493416" /translation="MKINLQDALDRLQEMRHVDSDEGVANALYRLGVAYLQRNRLTQA EEAFDEAQYLCEKLENRLGLAHVLQKQAELTLATGDGQAALAKLDQALAIFRQEAPPE VVFQAVELRARALDRLGRTAEAAAELENLLAQADQAGDEVSVLLLLQYLAPLQRRLGR VERALATYRRHGALAEKLGEPQRVALAYVAVGSLEAQLGRPEVARGALHRAAATFLGL GMVQQAREVRAEIARLGLEEQDGAPRDDT" gene complement(1076343..1076744) /locus_tag="Deba_0964" /db_xref="GeneID:9493417" CDS complement(1076343..1076744) /locus_tag="Deba_0964" /note="COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: pth:PTH_0986 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: A5D3M9 Uncharacterized conserved protein; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: conserved hypothetical protein TIGR00149" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806928.1" /db_xref="GI:302342399" /db_xref="GeneID:9493417" /translation="MPRETIFIETTARAQAIEITDQARRIVAQSGVKDGWCTIFVPHT TAAVTINEAADPAVMADVLRALEGLVPWSASYAHQEGNSAAHIKAILTGSSARAPVSG GRLGLGQWQGLFFMEFDGPRRRRALVDVSAG" misc_feature complement(1076361..1076696) /locus_tag="Deba_0964" /note="Uncharacterised protein family UPF0047; Region: UPF0047; cl00439" /db_xref="CDD:193820" gene 1076901..1077563 /locus_tag="Deba_0965" /db_xref="GeneID:9493418" CDS 1076901..1077563 /locus_tag="Deba_0965" /note="COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sat:SYN_02143 Zn-dependent hydrolases; SPTR: Q2LSA2 Zn-dependent hydrolases; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="Zn-dependent hydrolase" /protein_id="YP_003806929.1" /db_xref="GI:302342400" /db_xref="GeneID:9493418" /translation="MKLADGLHAFVWTQPNINNCNAYFIDGQTPTLIDPGHAQLFGHV EMGLSRDGLVNKPKLTIVTHCHPDHLEAAEPLQRAGVLLALGAQEDEYLKGDGRRLAA ALGMSFPEIVPDMFLQEGSLTLGQEELQVFVTPGHSPGHICLYWPRHKALFSGDLIFA QGVGRVDFPGGDGAQLKASIMRMAGLDVEWVLPGHGPIIKGKQNVQRNFELIEKMYFG MI" misc_feature 1076955..1077485 /locus_tag="Deba_0965" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(1077606..1078139) /locus_tag="Deba_0966" /db_xref="GeneID:9493419" CDS complement(1077606..1078139) /locus_tag="Deba_0966" /note="KEGG: hypothetical protein; SPTR: A4HAX0 Putative uncharacterized protein (Fragment)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806930.1" /db_xref="GI:302342401" /db_xref="GeneID:9493419" /translation="MALIKSSLEIALERAEAMMGRVEDTAKEEGRKHGQAAARRFLSG DVDGAAMAELLAARPEEQRRPALAAALEHFVEALLNGDDLAVDGLAALPLDRAKDKLA ALITAARGRFQAAGQLYADLAAVMADDLARMGIGGSAVLPNPLSLPDLELRTQKALAP HLQAVQEAAQALQRAVA" gene complement(1078175..1078741) /locus_tag="Deba_0967" /db_xref="GeneID:9493420" CDS complement(1078175..1078741) /locus_tag="Deba_0967" /EC_number="2.4.2.9" /note="COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: afw:Anae109_2194 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: uracil phosphoribosyltransferase; SPTR: A7HCF0 phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain" /codon_start=1 /transl_table=11 /product="uracil phosphoribosyltransferase" /protein_id="YP_003806931.1" /db_xref="GI:302342402" /db_xref="GeneID:9493420" /translation="MPASRSEIVLTAPQIARMIAALTSAIQAGSPAPAELCLVAIRRG GEELATRLAHGLARATGAPPKIGAIDITLYRDDWTMRTDRPVVRRTDITFPVDDREII LVDDVLFTGRTVRAALDELMDFGRPRVARLAVLVDRGGRELPIQPDYVGQTIACAKGE RIDVLLGGTPGDDRVVRQRQAGAGLAGL" misc_feature complement(1078214..1078720) /locus_tag="Deba_0967" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 1079148..1079235 /locus_tag="Deba_R0020" /db_xref="GeneID:9493421" tRNA 1079148..1079235 /locus_tag="Deba_R0020" /product="tRNA-Leu" /db_xref="GeneID:9493421" gene 1079805..1080437 /locus_tag="Deba_0968" /db_xref="GeneID:9493422" CDS 1079805..1080437 /locus_tag="Deba_0968" /note="InterPro IPR001647:IPR009057:IPR012287; KEGG: dat:HRM2_21660 HTH-type transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0QDK0 HTH-type transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003806932.1" /db_xref="GI:302342403" /db_xref="GeneID:9493422" /translation="MVVASRREREKLLRRRQIMDAAREVFAARGFGRATMEQIAERAE YKPATLYLYFKNKQELYTSLTMELMERISGRFTAWAGQAGLGPMEKLGQLPDLMCEIY DYDPTVLVALFRLQASQGLQHLAAETIAELNGHARRAMGCMAEVFADAMDRGLLRRHH PNAMADSAWAIFTGMVLWEESKRFFDGRKQYLKPTLKLAVDLLIAGAARK" misc_feature 1079853..1080368 /locus_tag="Deba_0968" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 1079856..1079996 /locus_tag="Deba_0968" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1080459..1081625 /locus_tag="Deba_0969" /db_xref="GeneID:9493423" CDS 1080459..1081625 /locus_tag="Deba_0969" /EC_number="2.3.1.176" /note="COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR016038:IPR002155; KEGG: dat:HRM2_45290 AtoB5; PRIAM: propanoyl-CoA C-acyltransferase; SPTR: D1JF94 Putative thiolase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain" /codon_start=1 /transl_table=11 /product="propanoyl-CoA C-acyltransferase" /protein_id="YP_003806933.1" /db_xref="GI:302342404" /db_xref="GeneID:9493423" /translation="MREVAVIGVGMTKFGVSDKTNIELFSQAALEAIGEAGLEPGDME ALFFGNCLGDFEEGQLHMAPFAAAAIGMPTTAPATRFEAACATATVAMRHAVLLVAAG VYDVALVGGAERCLRMGTDLATRAFAMASDAYYEGPTGVTFPAVFAMATHMYAAKHGV ELSELKRCMAEVSVKNHRHGALNPLAQFQKEIDLDKVLKGPMIADPLQLFDCCPFSDG ATACVVVAAERAKAAPKQPIWVAGMGQASAGPLYAQGDLTRVRAREAAVAASYKQAGL TAADIDVVELHDCFTIAEILALEALGFYEFGQGYAAAAKGETTFGGKVVVNPSGGLKA KGHPIGATGTGQVYEIVKQLRGECGPRQVAGAKVGMVDTLGGDLGTVCNLILRS" misc_feature 1080459..1081619 /locus_tag="Deba_0969" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK06064" /db_xref="CDD:180378" misc_feature 1080477..1081613 /locus_tag="Deba_0969" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature order(1080711..1080713,1081317..1081319,1081467..1081469) /locus_tag="Deba_0969" /note="active site" /db_xref="CDD:29416" gene 1081629..1082030 /locus_tag="Deba_0970" /db_xref="GeneID:9493424" CDS 1081629..1082030 /locus_tag="Deba_0970" /note="COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: afu:AF1292 hypothetical protein; PFAM: protein of unknown function DUF35; SPTR: O28977 Putative uncharacterized protein; PFAM: rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806934.1" /db_xref="GI:302342405" /db_xref="GeneID:9493424" /translation="MAQGVFLKDYIQALAEGRLLGQRCAACGAVTFPPKAVCAACGKA ENAPVELSGQGELTTFTVCRVAPEGMTPPYIVAMAKLAEGPCVIGNLEGVAADDADMS LIGRRVRLGSKPAASRSYAVDQCRVLTFELE" misc_feature 1081662..1081763 /locus_tag="Deba_0970" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" misc_feature 1081770..1081958 /locus_tag="Deba_0970" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene 1082059..1082853 /locus_tag="Deba_0971" /db_xref="GeneID:9493425" CDS 1082059..1082853 /locus_tag="Deba_0971" /note="COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198:IPR016040; KEGG: dat:HRM2_45260 FabG9; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C0QF81 FabG9; PFAM: short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_003806935.1" /db_xref="GI:302342406" /db_xref="GeneID:9493425" /translation="MNRFVWGYHMDAKNIVALVTGGASGLGEATARAFVAGGGKAAIF DLDEARGQQIAADLGPAAIFCKVNVVDEASVQAGVAAACAAFGLVNVAVNCAGVGTPA KVLGKGGLMSLDFWNKVIGINLTGTMNVIRYAVEKMAANQPNADGERGVIINTASVAA FEGQVGQAAYSASKGAVVAMTLPLAREFAPIGVRVMTVAPGIFETPMLKGLPANVQEA LGKMVPFPSRLGRAEEFAALAAHIVQNSMLNGETIRLDGAIRMQPK" misc_feature 1082086..1082778 /locus_tag="Deba_0971" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1082095..1082847 /locus_tag="Deba_0971" /note="17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs; Region: HSD10-like_SDR_c; cd05371" /db_xref="CDD:187629" misc_feature order(1082119..1082121,1082128..1082136,1082191..1082196, 1082257..1082265,1082341..1082349,1082422..1082424, 1082521..1082529,1082566..1082568,1082578..1082580, 1082656..1082667,1082671..1082682) /locus_tag="Deba_0971" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187629" misc_feature order(1082365..1082373,1082377..1082379,1082395..1082397, 1082404..1082409,1082416..1082418,1082428..1082433, 1082440..1082445,1082452..1082454,1082461..1082466, 1082473..1082475,1082494..1082502,1082536..1082556, 1082560..1082562,1082569..1082574,1082581..1082586, 1082593..1082598,1082602..1082610,1082614..1082619, 1082623..1082634,1082638..1082640,1082665..1082667, 1082728..1082736,1082740..1082748,1082758..1082760, 1082767..1082772,1082779..1082781,1082785..1082832, 1082836..1082847) /locus_tag="Deba_0971" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187629" misc_feature order(1082365..1082373,1082395..1082397,1082404..1082406, 1082416..1082418,1082431..1082433,1082440..1082445, 1082452..1082454,1082536..1082556,1082560..1082562, 1082569..1082574,1082581..1082586,1082593..1082598, 1082605..1082610,1082614..1082619,1082839..1082847) /locus_tag="Deba_0971" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187629" misc_feature order(1082425..1082427,1082527..1082529,1082566..1082568, 1082578..1082580) /locus_tag="Deba_0971" /note="active site" /db_xref="CDD:187629" gene 1082909..1084051 /locus_tag="Deba_0972" /db_xref="GeneID:9493426" CDS 1082909..1084051 /locus_tag="Deba_0972" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR006089:IPR013786:IPR013764; KEGG: afu:AF0436 acyl-CoA dehydrogenase (acd-2); PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B9ZGA7 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003806936.1" /db_xref="GI:302342407" /db_xref="GeneID:9493426" /translation="MDYNLTEEQSMLRDMAYKFAVKEIAPLSAKCDAEEAYTPELVKL AAENGLVGSWVPEEYGGAGAGIMGNALITEQLSRVDMGIGLNIVAATFGCEAIVLYGS EEQKEQYVRPVCEGKAISAGAYTEPNAGTDVAGYGTRAVKDGGDYIINGQKMFITNGT VCDFFLVQAITNPENKRHARFSQIIVPADAPGVTRTKIHGKMGIRSSNTAEISFEDVR VPQSNLVGVEGRGFYQLMHFFDTTRPMIAAQALGLSQACLDTSARYSREREVFGAPLG SFQLTQKKLAEMAIRIEALRGLTYRACWLIDNGTPDYTLAAMAKYYGGETAVFCADKA VEIHGGYGYIEEYPVQKWYRDAKILELYEGTKEAEIMTIGGAMMRK" misc_feature 1082909..1084048 /locus_tag="Deba_0972" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1082927..1084045 /locus_tag="Deba_0972" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1083182..1083184,1083272..1083274,1083278..1083280, 1083371..1083373,1083377..1083379,1083989..1083997, 1084001..1084003,1084007..1084009) /locus_tag="Deba_0972" /note="active site" /db_xref="CDD:173838" gene 1084171..1086060 /locus_tag="Deba_0973" /db_xref="GeneID:9493427" CDS 1084171..1086060 /locus_tag="Deba_0973" /note="KEGG: noc:Noc_2530 hypothetical protein; SPTR: B8KVG8 Sporulation and cell division repeat protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806937.1" /db_xref="GI:302342408" /db_xref="GeneID:9493427" /translation="MPRALIVALAAALSLLTALTAPPAAAEPREVCWILTLDYPLVRQ LMIERAFPLPGQRAVAADSDDGCTRIDLAEPQLSGDSGMLKVRAKISVKAGVSLLGNC ASPVRFDGYVDIWQQIALDQRTWRLKTHTVRTRLLDHGRRPVSVVNLVLNLVQENVPA YFDQFDIDLSPPRQDLDRQLPLFFKPEMTAQVESWLATLRPGKVEAQADAIRAQMCMT VDVPEQEQFYEETLLMPTDEEIDAFRNYWQAWDSFFVAELLSLENQPLTLDERDQVLT AMLDMRYGFLEALRDKDTSRDLVRRQFLETWSAISPILRKYGWQSPQRPTFNYFALMS ASDALAALDRLGPAIGLDISREGLFRLAHLVSSDPTLGELPYSDAQNDRLRQVLGLGP APERTAPAPVGEEIILPMPSLEQSSWLDFFVSAAHASQIDASSVDYEAIAPWLPPSSE NAPQYIERVREMMNQEADAVERKSKLSDKHRGLLRLIIEASAWQESCWRQFIAGQGRV TYLRSYNNTSVGIMQIYLDVWRGLYDPDSLRWDIRYNARAGCEILALYMKRYALKKSQ NLSDDILARSVYAMYNGGPGQLAKFLQRHKKGEFWLSDRLFWEKYLWVKSGQFQNIAA CLVGG" misc_feature 1085629..1085967 /locus_tag="Deba_0973" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(1085653..1085655,1085743..1085745,1085824..1085826, 1085911..1085913) /locus_tag="Deba_0973" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 1085653..1085655 /locus_tag="Deba_0973" /note="catalytic residue [active]" /db_xref="CDD:29556" gene complement(1086668..1088713) /locus_tag="Deba_0974" /db_xref="GeneID:9493428" CDS complement(1086668..1088713) /locus_tag="Deba_0974" /note="COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR008928:IPR012336:IPR004879:IPR012335; KEGG: sfu:Sfum_2547 hypothetical protein; PFAM: protein of unknown function DUF255; SPTR: A0LLC3 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806938.1" /db_xref="GI:302342409" /db_xref="GeneID:9493428" /translation="MPNALAAEQSPYLRQHADNPVDWLPWGPAALAKARDQQKPIFLS IGYATCHWCHVMAHESFEDQAVADLLNQHYVAVKVDREERPDLDAIYMTACQALSGAG GWPLTALLTPDGLPFIAGTYFPKTARLGRPGLLEILAEVARRWNGPERARMIQAGQEV ARAIQPQAGPKTDLDPRALGMAYSQLRQSFDDQFGGFGQAPKFPTPHNLLFLLRWQAR NPGSDALAMVEKTLTAMADGGLFDQVGFGFHRYSVDRPWLTPHFEKMLYDQALLAMAY LEAHQLTGREDFAATARQVFTYVLTRMTGPEGGFYAAEDADSEGVEGKYYVWTPQEVL AAAGQADGRLFNDFHGITADGNFEHGTSIPHRRQSLADFATQHGLDADQAAQALERAR LALLAARQQRIPPLKDDKIITAWNGLMIAALAKAGQALADEALTAAAARAATFILQTA RATGGRLARSQRDGQASGPGFLEDYAFMIWGLIELFEATFELDHLEAALELTDKCCEL FWDEADGGYFFSPADGEKLIMRDKDDYDGATPAGNSTMTLNLLRLARLTGRRQLEDMA QQLMQTMAAQTMRLPMAHTMLLMALDFAQGPTKEIVICGAKNDPAAQAMIAKAQQKFI PARALLWRPPEGPEAARLAALAPFTAGMTTVGGRATAYVCQDHVCARPVTDPDELRF" misc_feature complement(1086674..1088713) /locus_tag="Deba_0974" /note="Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]; Region: COG1331" /db_xref="CDD:31522" misc_feature complement(1088276..1088641) /locus_tag="Deba_0974" /note="TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein...; Region: SSP411; cd02955" /db_xref="CDD:48504" misc_feature complement(order(1088555..1088557,1088564..1088566)) /locus_tag="Deba_0974" /note="catalytic residues [active]" /db_xref="CDD:48504" gene 1088914..1089390 /locus_tag="Deba_0975" /db_xref="GeneID:9493429" CDS 1088914..1089390 /locus_tag="Deba_0975" /note="KEGG: dps:DP0200 hypothetical protein; SPTR: Q6ARU6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806939.1" /db_xref="GI:302342410" /db_xref="GeneID:9493429" /translation="MKRLVFLVVMVGLCLTPGLLAGAAGDMPGPDAQALWVYITQTDP YKNWRAWPDYQGVQPARGPHKPLNRVFVNGRGLSSQKPPANFGTIEVKETLTQEMQLR NITVQYKIEGYNPDGGDWFWAMYDPDGAVKMAGKLDGCIGCHATAKGNDYILAHKF" gene 1089429..1089863 /locus_tag="Deba_0976" /db_xref="GeneID:9493430" CDS 1089429..1089863 /locus_tag="Deba_0976" /note="KEGG: dvl:Dvul_1350 hypothetical protein; SPTR: Q72B28 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806940.1" /db_xref="GI:302342411" /db_xref="GeneID:9493430" /translation="MWHLYAHPLAQMAATALGFGALWLGLARTRSLHFGVITPFKRRW HALLGQMTLYTWLAGGVFGALAAWDYWGAWLHSGAHAMGGLIMAPVALFGLISGLVMT RRPRRRTALPLAHGLACLTALALAVVQFFSGRELMAQLVPGL" gene 1090022..1090495 /locus_tag="Deba_0977" /db_xref="GeneID:9493431" CDS 1090022..1090495 /locus_tag="Deba_0977" /note="KEGG: dsa:Desal_0181 hypothetical protein; SPTR: C6BVN7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806941.1" /db_xref="GI:302342412" /db_xref="GeneID:9493431" /translation="MTKIDQIGGGVQAGESKPGQRGVGAGQGASFDDFLTRAIDDGQA SQAAGESTGLGGVSQVAAPAEVLAATGQAHVTAVAQAEDLLATLEQYAQALGQGGSLK DLAGVVQAMETQAGLLGETADQLPEDDELAGLLRQVRARAEAEAMKFNRGDFIPA" gene 1090679..1091188 /locus_tag="Deba_0978" /db_xref="GeneID:9493432" CDS 1090679..1091188 /locus_tag="Deba_0978" /note="COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: mno:Mnod_1560 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: B8IPQ2 thioesterase superfamily protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003806942.1" /db_xref="GI:302342413" /db_xref="GeneID:9493432" /translation="MPQEETDRQRTVTWEDPAITVKAMGDHGGLEWLGLLKDGSLPRP PIGALLGYRLKDFGPGWALFEMDDGQWLYNPIGMIHGGALATLMDSAMGCAVHSTLPK GVGYSTIEFKVNFVHPVKSGVGRVFAEAKAIHVGKSIATAEATVKDGQGRLYAHAVCT CMILRAQKA" misc_feature 1090823..1091167 /locus_tag="Deba_0978" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(1090913..1090915,1091000..1091002,1091021..1091032) /locus_tag="Deba_0978" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(1090916..1090918,1090922..1090924,1090931..1090933, 1091003..1091017,1091021..1091023) /locus_tag="Deba_0978" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(1090919..1090921,1090943..1090948,1090955..1090960, 1091000..1091002) /locus_tag="Deba_0978" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(1091220..1091579) /locus_tag="Deba_0979" /db_xref="GeneID:9493433" CDS complement(1091220..1091579) /locus_tag="Deba_0979" /note="KEGG: hypothetical LOC579604; SPTR: C8QGF4 Protein TolA" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806943.1" /db_xref="GI:302342414" /db_xref="GeneID:9493433" /translation="MRFIALISLLATAVLAWSGAAAMTAEEMQRLRKAGVSEVNIQKM LELERLQGQGAVTEQDGQVVYRAGQGNAARRQANQAHERWKEEKSLEAVGGMVIDARP DAAAQGSTQPQGATTGQ" gene 1091752..1093662 /locus_tag="Deba_0980" /db_xref="GeneID:9493434" CDS 1091752..1093662 /locus_tag="Deba_0980" /note="COGs: COG1530 ribonuclease G and E; InterProIPR016027:IPR003029:IPR019307:IPR012340:IPR 004659; KEGG: gme:Gmet_2546 ribonuclease E; PFAM: RNA-binding protein AU-1/ribonuclease E/G; RNA binding S1 domain protein; SPTR: Q39SK9 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family" /codon_start=1 /transl_table=11 /product="ribonuclease, Rne/Rng family" /protein_id="YP_003806944.1" /db_xref="GI:302342415" /db_xref="GeneID:9493434" /translation="MIKRMLINAREPGELRVALVEGGRLEAFFVETAAREQTRGNIYK GVVVNVERSLQAAFVDYGAGRNGFLQISDLCPAFIKGAGHNGRVNKPIQEVLRAGHEL LVQVVKEETATKGASLTTFFSIPGQYMVLTPGHESQGVSRKIESEAERERIKEALAGA SCPEGIGVIARTAAEGRSKREIQQNLQQLLRLWLDIKKRGDSAKPRTLIHREEELAVR VVRDHFTSDVTEILVDDQDVFNRLQRYLAVVSPRRKTQLKLYTDPRPIFQKSQLEQQI LSIYQPTVPLPSGGSIVIHPTEALVSIDVNSGRNVSGKQIEETALNVNKEAAVEVARQ LRLRDLGGLVVVDFIDMRDRANQRTVRKVFADELKKDKAKITIGAISRFGLLELSRQR IRPPIDFGATMVCPHCQGRGLVRTTEAIGRGVMRALEHKLGDGDKSGLRVRVGTEAAN YLQNVRRADLMRLEERYGLCIEVLADPGLSPEESRMERFEATWTPPQPAAPPVLQAVI EAPEEPEPEEFEEDEADGEGAVEAAAADEPAKKSSSRRRRGGRRKSAKKDAIAPAAQP QAGPAPSVEAKSIVETPVAEQSGEPTAAKKRRRRPSSRRRRKPAEGQAAEARSAIAAA PEHGGVIGDEAD" misc_feature 1091794..1093029 /locus_tag="Deba_0980" /note="ribonuclease, Rne/Rng family; Region: RNaseEG; TIGR00757" /db_xref="CDD:188080" misc_feature 1091848..1092129 /locus_tag="Deba_0980" /note="S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453" /db_xref="CDD:88419" misc_feature order(1091881..1091883,1092040..1092042,1092052..1092054) /locus_tag="Deba_0980" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:88419" misc_feature order(1091953..1091955,1092073..1092075,1092082..1092084, 1092091..1092096,1092124..1092126) /locus_tag="Deba_0980" /note="oligonucleotide binding site [chemical binding]; other site" /db_xref="CDD:88419" gene 1094037..1094492 /locus_tag="Deba_0981" /db_xref="GeneID:9493435" CDS 1094037..1094492 /locus_tag="Deba_0981" /EC_number="1.8.99.2" /note="InterPro IPR001450:IPR017900:IPR017896:IPR011802; KEGG: sfu:Sfum_1047 adenylylsulfate reductase, subunit beta; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A6ZJS6 AprB (Fragment); TIGRFAM: adenylylsulfate reductase, subunit beta; PFAM: Adenosine-5'-phosphosulfate reductase subunit beta; TIGRFAM: adenosine phosphosulphate reductase, subunit beta" /codon_start=1 /transl_table=11 /product="dissimilatory adenylylsulfate reductase subunit beta" /protein_id="YP_003806945.1" /db_xref="GI:302342416" /db_xref="GeneID:9493435" /translation="MPSYVIVEKCDGCKGQDKTACMYICPNDLMLLDKDGSMGYGAMK AFNRDVSMCWECYNCVKICPQQAIDIRGYADFMPLGGSVVPLRGSDSIMWTVKFRDGN VKRFKFPIRTTAEGSADPMGGFPVGDGDIKSANLMTEPASCGADVLPTR" misc_feature 1094037..1094453 /locus_tag="Deba_0981" /note="adenosine phosphosulphate reductase, beta subunit; Region: aprB; TIGR02060" /db_xref="CDD:131115" misc_feature <1094037..1094249 /locus_tag="Deba_0981" /note="RPB11 and RPB3 subunits of RNA polymerase; Region: RNAP_RPB11_RPB3; cl11409" /db_xref="CDD:196219" misc_feature 1094244..1094489 /locus_tag="Deba_0981" /note="Adenosine-5'-phosphosulfate reductase beta subunit; Region: APS-reductase_C; pfam12139" /db_xref="CDD:192941" gene 1094516..1096384 /locus_tag="Deba_0982" /db_xref="GeneID:9493436" CDS 1094516..1096384 /locus_tag="Deba_0982" /EC_number="1.8.99.2" /note="COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR015939:IPR003953:IPR011803; KEGG: sfu:Sfum_1048 adenylylsulfate reductase subunit alpha; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: A6ZJS7 AprA (Fragment); TIGRFAM: adenylylsulfate reductase, subunit alpha; PFAM: domain; FAD binding domain; TIGRFAM: adenosine phosphosulphate reductase, subunit alpha" /codon_start=1 /transl_table=11 /product="dissimilatory adenylylsulfate reductase subunit alpha precursor" /protein_id="YP_003806946.1" /db_xref="GI:302342417" /db_xref="GeneID:9493436" /translation="MPNFETVQVTTDLLICGGGMAAAGAAVEAAYWAKKNGLKVTLVD KAAFDRSGAVAMGLSAINEYIGYAAGDNSLEDYVKYVRQDLMGIARDDLVYNIARHVD GSVHLFEKWGLPIWTDENGKFVREGRWQIMINGESYKVIVAEAAKNAMKDAGCDIIER VFIVGPIMDGERVAGAYGFSTRENKFYVFNAKATIAVMGGAVHVFRPRSVGEGLGRSW YPPFNSGSTTYFTLQAGAEMTCQEIRFIPVRFKDAYGPVGAWFLLFKSRATSATGGEY MAERKAELNNWAPYGLVKPIPANLRNYLGMLDVDAGLGPLYMETAEAIQKLADAFKDD PKAFKKKMKTLENEAWEDFLDMTCSQALLWASSNIYPEQSRSEIAACEPYFIGSHSGG SGAWVSGPEDVSTPYKWGYGNMTTTKGLFTAGDGSGASSHKFSSGSHAEGRFAGKEAV RFILDNNTLPALGDVEALKAKALAPLARFEEFSALSTDPLLNPNYIRPMQFMFRLQKI MDEYAGGVVSAFKTSDKLLERGLELLAMLQDDSGKLAANGVYELERCWENVHRMWQAE AHVRTILFREETRWPGYYFRADKPKMDEANWKCFVNCTFKDGKWEMKKVPVVPMDV" misc_feature 1094516..1096369 /locus_tag="Deba_0982" /note="adenylylsulfate reductase subunit alpha; Validated; Region: PRK06854" /db_xref="CDD:180733" misc_feature 1096025..1096369 /locus_tag="Deba_0982" /note="domain; Region: Succ_DH_flav_C; pfam02910" /db_xref="CDD:190472" gene 1096748..1097986 /locus_tag="Deba_0983" /db_xref="GeneID:9493437" CDS 1096748..1097986 /locus_tag="Deba_0983" /note="COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR006076; KEGG: sfu:Sfum_1287 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: FAD dependent oxidoreductase; SPTR: A0LHS7 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_003806947.1" /db_xref="GI:302342418" /db_xref="GeneID:9493437" /translation="MGQAIMVVGAGMTGLSAALEAAEAGCKVVLVEKNPYLGGRVAQL HQYFPKLCPPYCGLEINFRRVRSNSNIDILTMAEVTAISGEPGNYKVSVKQSPRFVND KCTACGKCAEAVETQIDSAFNYGLCKTKAAYLPHDLAFPYRYVIDPSIIGTPEAQKAK DACPYDAVVLDDAEKELTFEVASVIWAAGWTPYDPRKVQYYNFDKSPNIVTNVQMERL AAFSGPTGGQILRPGDGQAPKSVAFIQCAGSRDINNMPQCSTICCLASLKQATYVREK LPEAKVTIYFIDIRAMDRNEDFYTKVKADEGVSFVKSKIAMIEPQDDGSLILEGENTT TGERFKAQHDLVVLATGMQPNTALSKVPAEVEYDEYGFMRQGEGIFGAGTVRRPSEVV TCVQDGTGAALRAIQLVAGR" misc_feature 1096748..1097977 /locus_tag="Deba_0983" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" gene 1097993..1100230 /locus_tag="Deba_0984" /db_xref="GeneID:9493438" CDS 1097993..1100230 /locus_tag="Deba_0984" /note="COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR013027:IPR004792:IPR001450:IPR003813:IPR 017900:IPR017896; KEGG: adg:Adeg_1078 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; HI0933 family protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C9RD78 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta; Pyridine nucleotide-disulphide oxidoreductase" /codon_start=1 /transl_table=11 /product="methyl-viologen-reducing hydrogenase subunit delta" /protein_id="YP_003806948.1" /db_xref="GI:302342419" /db_xref="GeneID:9493438" /translation="MSKNAVCYLCKGCGIGDALDFERLTEVVEEGGVSEVKEHDALCS PEGLAMIKEDIDGGVDAVLIGACSSRVKTDEFSFGGGVVVERTSLREQVVWCTSPDAT DDGEEDRQMLAEDYLRMACVKLEKCQPLTPFQLEGEIYKSLMVVGGGPAGMSAAIQAA KAGSQVFLIEKEDKLGGFLNTIDKLGPQSPPYTELEDNPVAEMVGQIEASDKIKVFTG CTVAKTAGAPGKFDVELSNGEKLQIGAIVQATGWLPYDASKLADELAYGSSPDIVTNV EFEQMVKDGKLARKSDGEDIAAIAFIQCAGSRDQNHLPYCSAFCCLVSLKQAIYVKEQ NPETAVYVIYKDIRTPSQSEEVYREAQRKGVIFIRRDETYPTITAGDKLSLEVNDVLL GEDVSLEELDMVVLATGMRPNNPKVVDAPLVAFGEDQEVAKKLTAEAKAACEDWSVLN LDYRQGKNLPTLKYAMPDSHFICFPYESRRTGIYPVGTVRRPMRLTQAIDDGVGAALK AIQAIKAAEAGCAVHPRSGDESFPEFFMQRCTQCKRCTEECPFGAINEDEKANPLPNP TRCRRCGVCMGACPERIISFKNYSVDMIGSMIKAINVPEEDDEKPRVIMLACENDALP AIDMAAAKGMTWSPYVRLIPIRCLGSMNLVWIADALSSGIDGVVLLGCRRGEDYQCHF IKGSELANVRMSKISETLTRLVLESDRVAVEEVSITDLHKIPAIIDAFMETIEEVGPN PYKGF" misc_feature 1098014..>1098697 /locus_tag="Deba_0984" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature 1098425..>1098520 /locus_tag="Deba_0984" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature <1098629..1099795 /locus_tag="Deba_0984" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature 1099823..1100227 /locus_tag="Deba_0984" /note="Methyl-viologen-reducing hydrogenase, delta subunit; Region: FlpD; cl00831" /db_xref="CDD:120156" gene 1100311..1100955 /locus_tag="Deba_0985" /db_xref="GeneID:9493439" CDS 1100311..1100955 /locus_tag="Deba_0985" /note="COGs: COG1150 Heterodisulfide reductase subunit C; InterPro IPR009051:IPR017900:IPR012285:IPR017896; KEGG: drm:Dred_0633 heterodisulfide reductase, C subunit; SPTR: A7BT24 Heterodisulfide reductase subunit C" /codon_start=1 /transl_table=11 /product="heterodisulfide reductase, C subunit" /protein_id="YP_003806949.1" /db_xref="GI:302342420" /db_xref="GeneID:9493439" /translation="MDSNLENVAAGAQGTQSKDKAPATRAYEPDFCNEVYEKVDCGSE IKQCMQCGVCGATCPLRDQMVYGPRQLWMLIRAGRREQVLNCPDIMLCTSCYTCKVRC PRGVRVIDVMHGLANYAIKQGIMPREETVKFGRVFWKSIYKKGRVDETAVGQGYALAD GLVKGIKNGLEMAPMGLAMVTHKRMGLLPVRAIKGIKDLQKMLDKAAQMTGEEA" misc_feature 1100443..>1100748 /locus_tag="Deba_0985" /note="Heterodisulfide reductase, subunit C [Energy production and conversion]; Region: HdrC; COG1150" /db_xref="CDD:31344" gene 1100957..1101835 /locus_tag="Deba_0986" /db_xref="GeneID:9493440" CDS 1100957..1101835 /locus_tag="Deba_0986" /EC_number="1.8.98.1" /note="COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: dae:Dtox_3573 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: C8VVZ8 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain" /codon_start=1 /transl_table=11 /product="CoB--CoM heterodisulfide reductase" /protein_id="YP_003806950.1" /db_xref="GI:302342421" /db_xref="GeneID:9493440" /translation="MDYFLYSGCSLDASASHYMISLEAVCKALGAHLKDIEDWNCCGA SIAYIGGNEMQQIVLNARNLALAEKQGGMDIIAPCSSCYIMMNKYNRELQENPALLAK VNGILAEGGLSYSGGLKVRHILDVLYNDIGVDKIKGQLRKPLTGVKVASYYGCQTTRP FGEYDSMESPTTQDELLAALGAEVVPFDKKVKCCGSGLFLTEIELCARLADDIIGNAK DHGAEVISTACPMCQMNLEVYQPRISKILGKEIKMPVVFITQLMAVALGLDPKKDAAL DRNIVAPESVLRAAAA" misc_feature 1100957..1101817 /locus_tag="Deba_0986" /note="Heterodisulfide reductase, subunit B [Energy production and conversion]; Region: HdrB; COG2048" /db_xref="CDD:32231" misc_feature 1101035..1101214 /locus_tag="Deba_0986" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" misc_feature 1101485..1101667 /locus_tag="Deba_0986" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene 1101921..1102193 /locus_tag="Deba_0987" /db_xref="GeneID:9493441" CDS 1101921..1102193 /locus_tag="Deba_0987" /note="KEGG: sfu:Sfum_1055 hypothetical protein; SPTR: A0LH47 Putative uncharacterized protein; PFAM: Ogr/delta-like zinc finger" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806951.1" /db_xref="GI:302342422" /db_xref="GeneID:9493441" /translation="MSEAKDKSICPHCGEQMKKWASPVTATWGGEFLWICFNDNCGYY QRGWDHTFKKIGVKASYRHRYDPETGQEGPFPVNSPDAGKDGIIDG" misc_feature 1101945..>1102079 /locus_tag="Deba_0987" /note="Ogr/Delta-like zinc finger; Region: Ogr_Delta; cl04623" /db_xref="CDD:194929" gene 1102252..1103004 /locus_tag="Deba_0988" /db_xref="GeneID:9493442" CDS 1102252..1103004 /locus_tag="Deba_0988" /note="InterPro IPR004027:IPR010916; KEGG: chl:Chy400_0565 preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SPTR: B9LJ40 Protein translocase subunit secA; PFAM: SEC-C motif" /codon_start=1 /transl_table=11 /product="SEC-C motif domain protein" /protein_id="YP_003806952.1" /db_xref="GI:302342423" /db_xref="GeneID:9493442" /translation="MDLSNIARNDLCPCGSGKKFKKCHMGRENELLDDTLSVDPAQLA MKIIALPACAHPRAAEMAASLEIVSPAGKQLKVKLVDLAAYCALTPYAKQNGAEQNDG GVVINPLKTKLLDPGFVYLALSPKAGDSTIVHELAHVIDMVCGSCLPAGKAQEMAGEM SVPVELLEHPQEFGDKLIELAERFAVSLDAEDEIIAILARRQLLLPARMVAKGDHKEI VAAAEKTMRFMQNNQAEIDARIREREGYLGPR" misc_feature 1102273..1102335 /locus_tag="Deba_0988" /note="SEC-C motif; Region: SEC-C; cl12132" /db_xref="CDD:196349" gene 1103408..1105237 /locus_tag="Deba_0989" /db_xref="GeneID:9493443" CDS 1103408..1105237 /locus_tag="Deba_0989" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: azc:AZC_1520 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: A8HXN1 glycosyltransferase; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806953.1" /db_xref="GI:302342424" /db_xref="GeneID:9493443" /translation="MFIPQYYKLQAGLDQAVTDEQAWRHWLLAGHKREIALNPLFDAE YYRQVWADKEPRIASEPSAFMHWLKHGLQERIIPTVLFDEKFYLHAYPDVVACGMWSF EHFIRFGVNERRWPNGLFSSGRYMEKNNDNLNGLAPYYHFLMYGDDCGFNGDTHNFDP REFGMPSWRDLYRLAVDKNREFFDDRIQCGVLAEVLERAARIEPLINKPAVAARVLHI PPFMGQQTGTYAAAKKARLALRRPHYTNVVCIPHCRVGGAARVAGLFCQALAKIFPDE PTLLILTDLSVFARPDWFPDNIEIFDLSAIVDGLSAAHKQTVLMDVLRGTTPERIVNI NSRLCWDTYMVFGQQLSQWSRLFAYFFCYDINPQGHKVGYPIEFFAPSYKFMSGYFFD NQALVDELEYRYLLKNSSEHKSKAVWTPIESDSTLCLHAQKLQKKSEVSSRWRAFWAG RLDRQKRYDIVVEIANMMPELDIWTWGHAVLDGGFDTKNLPPNMKFFGTFESFDDLPL HDCDFWLYTSEWDGLPTMLLETGVRGIATVASRVGGTADVINEETGWPVDDFLDPRSY VMAIRQMMGDPGACLAKAGALRDLIAARHSMNHYATEIEAALK" misc_feature 1104146..1105234 /locus_tag="Deba_0989" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature <1104728..1105234 /locus_tag="Deba_0989" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" gene 1105234..1105977 /locus_tag="Deba_0990" /db_xref="GeneID:9493444" CDS 1105234..1105977 /locus_tag="Deba_0990" /note="InterPro IPR001173; KEGG: azc:AZC_1521 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: A8HXN4 glycosyltransferase; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806954.1" /db_xref="GI:302342425" /db_xref="GeneID:9493444" /translation="MNAQAQFEISAIMTVHGEGVLAGLSLRSMLEAVDNVRHDAEAVE LMVVLDCPDNATRSFVESLSVDGMVVLNTDFADQGKVRNHAIKNARGRYVAFLDGDDL WSFNWLSAAWDMIRACDDGAIVHPEFNWLFDMSGGVLEKIEMSNRFFDKEYLRVMNYW DALCFASKATYETFPYPERNISSGFAYEDWYWNCVTVASGYEHVVAPDTVHFKRRRSG SQTVEASSRRALPRMNGFFDYKFFSQGEF" misc_feature 1105255..1105956 /locus_tag="Deba_0990" /note="Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463" /db_xref="CDD:30811" misc_feature 1105309..1105659 /locus_tag="Deba_0990" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761" /db_xref="CDD:132997" misc_feature order(1105375..1105377,1105525..1105527,1105531..1105533) /locus_tag="Deba_0990" /note="active site" /db_xref="CDD:132997" gene 1106017..1107162 /locus_tag="Deba_0991" /db_xref="GeneID:9493445" CDS 1106017..1107162 /locus_tag="Deba_0991" /note="InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ter:Tery_2862 hypothetical protein; PFAM: hypothetical protein; SPTR: Q4CAF1 TPR repeat:Sel1-like repeat:Sel1-like repeat; TIGRFAM: pentatricopeptide repeat domain (PPR motif)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806955.1" /db_xref="GI:302342426" /db_xref="GeneID:9493445" /translation="MLHKDKKFLRAVVGVDSSHCDKALPDDTVQALLRNIIENQTDST QRVKLSSYYRSVDKTDIADRISSIGDDLAATEMEPVAIQIFRVLLDGKLYQDCDLLVD ALIDSRQEVDVYKKIGDIYRIGGRNDKAIDVLLRACDVCNSADSLYYELGELYAKDGN HRAAADFYYKASVLNRSILFYYSKMSEALLRQGEMSKAIEYTQNIISLGTDNQYIVFG LGKLLLDAENYKEAEALFQRAISMDNTVAMFYTHLAECYSRQGRVHEAIDCLKGIISK FSDKPSVHYLLAKLLIRTKKFTDAEDVISNAISIDPTSSLYYRLAAECMRLQGKFDDA CRLLRLAIKHDELNPAHYFELSRCLKLTGDFLGAELLHDRALVLCQS" misc_feature 1106455..1106745 /locus_tag="Deba_0991" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1106455..1106457,1106461..1106466,1106473..1106478, 1106563..1106568,1106572..1106577,1106584..1106589, 1106665..1106670,1106677..1106682,1106689..1106694) /locus_tag="Deba_0991" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1106470..1106472,1106506..1106508,1106518..1106520, 1106527..1106529,1106572..1106574,1106608..1106610, 1106620..1106622,1106629..1106631,1106674..1106676, 1106710..1106712,1106722..1106724,1106731..1106733) /locus_tag="Deba_0991" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 1106656..1106955 /locus_tag="Deba_0991" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1106656..1106661,1106665..1106670,1106677..1106682, 1106767..1106772,1106776..1106781,1106788..1106793, 1106869..1106874,1106881..1106886,1106893..1106898) /locus_tag="Deba_0991" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1106674..1106676,1106710..1106712,1106722..1106724, 1106731..1106733,1106776..1106778,1106812..1106814, 1106824..1106826,1106833..1106835,1106878..1106880, 1106914..1106916,1106926..1106928,1106935..1106937) /locus_tag="Deba_0991" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 1106689..1106937 /locus_tag="Deba_0991" /note="Anaphase-promoting complex, cyclosome, subunit 3; Region: Apc3; pfam12895" /db_xref="CDD:193368" misc_feature 1106869..1107159 /locus_tag="Deba_0991" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1106869..1106874,1106881..1106886,1106971..1106976, 1106980..1106985,1106992..1106997,1107073..1107078, 1107085..1107090,1107097..1107102) /locus_tag="Deba_0991" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1106878..1106880,1106914..1106916,1106926..1106928, 1106935..1106937,1106980..1106982,1107016..1107018, 1107028..1107030,1107037..1107039,1107082..1107084, 1107118..1107120,1107130..1107132,1107139..1107141) /locus_tag="Deba_0991" /note="TPR motif; other site" /db_xref="CDD:29151" gene 1107177..1108160 /locus_tag="Deba_0992" /db_xref="GeneID:9493446" CDS 1107177..1108160 /locus_tag="Deba_0992" /note="COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: ter:Tery_4437 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q10WF0 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806956.1" /db_xref="GI:302342427" /db_xref="GeneID:9493446" /translation="MPCVLNPDFCKASVVITTKNPGRIFDNVIAMVLSQKTPWDYEVI VIDSGSKDGTVEKLRLLDDKITLICIRPEEFGHGRTRNLGVTHAQGDYVAFLTHDAVP ATSEWLSELVTALELDVTACAAFGRHIAHNDADPFTKRDLQAHFDFLGSTTTVQSKFS DHILYDTQIRHRQFLHFYSDNNSCLRKSVWKVYPYPDAEFAEDQIWAATVIDAGFSRV YAHSAVVKHSHDYSSIGTFRRAFDESAAFQRIFGYSLCASLVRGMLSAASCCMHDMQY ALINKLPLRRVISRIIRNILRSFGHYLGAKIDQIPTSVAMQLSLDKKLYRS" misc_feature 1107207..1108079 /locus_tag="Deba_0992" /note="Predicted glycosyltransferases [General function prediction only]; Region: COG1216" /db_xref="CDD:31409" misc_feature 1107216..>1107563 /locus_tag="Deba_0992" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761" /db_xref="CDD:132997" misc_feature order(1107225..1107227,1107231..1107233,1107312..1107314, 1107465..1107467,1107471..1107473) /locus_tag="Deba_0992" /note="active site" /db_xref="CDD:132997" gene 1108176..1109348 /locus_tag="Deba_0993" /db_xref="GeneID:9493447" CDS 1108176..1109348 /locus_tag="Deba_0993" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: hau:Haur_2165 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: A2BD23 WsbJ; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806957.1" /db_xref="GI:302342428" /db_xref="GeneID:9493447" /translation="MVFSHIRDGLHALLVRGYGLIAPKQSVDKRFDFVSCAPFGPSHK DVKPSCNTVNWFVPPIGYGSGGHLNIVRFIKLLEDDGFECRIVVTNEFRPYDNKKIAS QISEWFAPVKAKVYLHPQDTIPAAHISVATGWQTAYPVKYFSGSAHKYYFVQDYEPYF YPLGTEYFLAEDTYRFGFTGIALGSWLADMLSAQYGMRMYGIGFSYDDDLYTPRLDKD CSGPKRLLFYARPETPRRAFELGVLAINDVKKHMPSVDVLLVGGNLSRYNLPFSFKDC GRLPISELPHLYSQCDAALVLSMTNLSLLPLEIMACGCPVISNCGPNVEWMLNSTNCK LSRPTVSGLAEAIISVLSDERERKQLIKNGLDYARSTSWKEEAKKVAQIFRQTYNE" misc_feature 1108332..1109330 /locus_tag="Deba_0993" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" misc_feature 1108338..1109345 /locus_tag="Deba_0993" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" gene 1109341..1110375 /locus_tag="Deba_0994" /db_xref="GeneID:9493448" CDS 1109341..1110375 /locus_tag="Deba_0994" /note="COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: dvm:DvMF_2922 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B9BAZ3 UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_003806958.1" /db_xref="GI:302342429" /db_xref="GeneID:9493448" /translation="MNSHGRISMANEFSSDLNNFRHVVVGAGGFLGTNISAGFKKSNL DLLCIDACERPKYSNHAGEKNWLSGTLSDKEFFVEHLKPNDIVYHLVSTTNPSNSDLA PDKDVEDNLIGSLKLFQACSERRIKKLIFISSGGTIYGPDAPVPTPEFADTSPICSYG ATKLAIEKYLEIFRKQHGLDYIIFRVSNAYGPFQIARGQGIIAMALHRFFHDEPLEIW GDGSAVRDYIFVDDIVSAVLMGAASSTQSPRLYNLGSGVGHSVNEVVEALNFALGGRL ETVRREGRSVDVPRSILDIERIKLHLNWRPKIDLKAGISATVNWYREFIRCSGQDHNH EYSRADEKIN" misc_feature 1109401..1110318 /locus_tag="Deba_0994" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature 1109401..1110300 /locus_tag="Deba_0994" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(1109416..1109418,1109422..1109427,1109431..1109433, 1109473..1109478,1109497..1109499,1109608..1109616, 1109734..1109742,1109815..1109817,1109827..1109829, 1109896..1109907) /locus_tag="Deba_0994" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1109668..1109670,1109740..1109742,1109815..1109817, 1109827..1109829) /locus_tag="Deba_0994" /note="active site" /db_xref="CDD:187535" gene 1110389..1111384 /locus_tag="Deba_0995" /db_xref="GeneID:9493449" CDS 1110389..1111384 /locus_tag="Deba_0995" /note="COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: mag:amb1074 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Q2W8E7 Predicted glycosyltransferase; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806959.1" /db_xref="GI:302342430" /db_xref="GeneID:9493449" /translation="MVGTFRKALITVIIVNYNAKTHLARCLDALREQTVQDFHIVLVD NASTDGSLNEIYTNENLTVVRLAENVGFAAANNIGALRSQSEFIALLNPDAFPAPTWL EKLMEHAKAYPEYAAFGSTQLLDANSDLLDGAGDVLYFFGLPRRSKHLERAIPLPPTR EVFSPCAAAALYRRHLFVGVGGLDEAFFCYCEDVDLGFRLRLRGYKCLQVADAIVRHV GGGSSGQISGFAERHGHRNALWMHIKNMPMPLLALTLPCHFIAEFAKAIFDIASPSRG RLAQRAHNVKCRIQGICEALAQIGPMMLQRRIIQEKRVISSCSVARTLCWRPWAS" misc_feature 1110422..1111045 /locus_tag="Deba_0995" /note="Subfamily of Glycosyltransferase Family GT2 of unknown function; Region: GT_2_like_c; cd04186" /db_xref="CDD:133029" misc_feature order(1110521..1110523,1110665..1110670) /locus_tag="Deba_0995" /note="Probable Catalytic site [active]" /db_xref="CDD:133029" misc_feature order(1110668..1110670,1110965..1110967,1110971..1110973) /locus_tag="Deba_0995" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:133029" gene complement(1111377..1112915) /locus_tag="Deba_0996" /db_xref="GeneID:9493450" CDS complement(1111377..1112915) /locus_tag="Deba_0996" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004090:IPR003660:IPR004089:IPR018212; KEGG: dps:DP0161 methyl-accepting chemotaxis protein (TlpB); PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; SPTR: Q6ARY5 Related to methyl-accepting chemotaxis protein (TlpB); PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003806960.1" /db_xref="GI:302342431" /db_xref="GeneID:9493450" /translation="MKLRTKLLISLALVLITALCAVQIFQYNWTINLVSEMTAHRLEM LEQSEKQQADNLFFTIERAVQGSLVRGEMEKFTSLLESLRQLKGLEEVSLFSAAGVAT HSSNRKFLGSRLDKTMAAKVLNEPQTHYRQTQNALEIYQPHKVSADCIRCHISWRNGE IRGVTFYRFSTAALRQAEAEAADNMAVLKANSLQTALAAVAGVLVLVALCLFLTVRRF VDQPMAKLVEMLTQYDVDLTLEMPIQSRDEIGQAAKLLNRFVQKLNDVIGHSQQVAAA TGVQAGQQAAAIEQISHAANDITALTRENAADAKTAADLMSAVTAQVVQSGKSIANLS GAMDELRESSRQVANIMKTIDEIAFQTNLLALNAAVEAARAGEAGAGFAVVAGEVRSL ALRVAEAARNTAQLIDGTIGKIQESGELVTATHEAFGGVQQIIEQAAELMAGVAMSSQ EQDTGIAGISNSLREIDNATGQGAAQAANLATTMGTFRTSYNSGQDAAIQRALPEKMS TEIN" misc_feature complement(1111515..1112039) /locus_tag="Deba_0996" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(1112912..1113841) /locus_tag="Deba_0997" /db_xref="GeneID:9493451" CDS complement(1112912..1113841) /locus_tag="Deba_0997" /EC_number="1.12.99.6" /note="COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterProIPR001821:IPR019546:IPR006137:IPR016160:IPR 017909:IPR006311; KEGG: dps:DP0160 periplasmic [NiFeSe] hydrogenase, small subunit [precursor]; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Twin-arginine translocation pathway, signal sequence, subgroup; PRIAM: Hydrogenase (acceptor); SPTR: Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit [Precursor]; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; hydrogenase (NiFe) small subunit (hydA)" /codon_start=1 /transl_table=11 /product="hydrogenase (NiFe) small subunit HydA" /protein_id="YP_003806961.1" /db_xref="GI:302342432" /db_xref="GeneID:9493451" /translation="MASITRRQFLKFGATLAAVMGLEPSLAPSLAQALARMEAGQAPV LWLQGQSCSGCSVSFLNSEAPSPARVITRYISLLFHSTLSAATGQTAMDTVDKAIDAG GYLLVVEGSLPAGMPEACVMGHRPVTDLVKAAAAKAKAVVALGSCAAFGGIPAAQNNP TGAVGVAEFLEAQGVKTPLINLPGCPTHPDWLVGTLAHLLQWGLPPLDALKRPKAFYG RILHDQCPRFADYERENFAKTFGEPGCLFKLGCLGPITHADCTVRFWNGGVNTCIAAG APCIGCASEGFARSAELPFYRKTELARGKGGRN" misc_feature complement(1112921..1113841) /locus_tag="Deba_0997" /note="Ni,Fe-hydrogenase I small subunit [Energy production and conversion]; Region: HyaA; COG1740" /db_xref="CDD:31926" misc_feature complement(1113245..1113688) /locus_tag="Deba_0997" /note="NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; cl00419" /db_xref="CDD:193811" gene complement(1113854..1115356) /locus_tag="Deba_0998" /db_xref="GeneID:9493452" CDS complement(1113854..1115356) /locus_tag="Deba_0998" /EC_number="1.12.2.1" /note="COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501:IPR018194; KEGG: dps:DP0159 cytochrome-c3 hydrogenase (NiFeSe), large subunit; PFAM: nickel-dependent hydrogenase large subunit; PRIAM: cytochrome-c3 hydrogenase; SPTR: Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), large subunit; PFAM: Nickel-dependent hydrogenase" /codon_start=1 /transl_table=11 /product="cytochrome-c3 hydrogenase" /protein_id="YP_003806962.1" /db_xref="GI:302342433" /db_xref="GeneID:9493452" /translation="MGTLVELSPLTRIEGHLGIRLELDGGKVASAYCAGEMFRGFENI LRGRDPLDAQQITQRICGVCPISHGLASILAQEQIYNPALTPNGVIARNLILGANYIQ SHLIHFYQLSALDFVDVTAILGYHGADPALNDLRDWVSGQRKAGAISPGAPFLPRYAG HYIQDAGLNVGALKHYLQALDMRALAHQAVAIWAGKVPHATALAPGGVTEQVSAKKIA AYAAIIDQLRVFIDTAYLPDILAVATAFPEYFQHGAGPGDFMAYGVFPQEDGFLLPAG RVSHGQAASLDLTKITEQTTHSLFSSPSGLHPTKGQTIPAPRKSGAYSWLKAPRYDNR PQEVGPLARILVAYQAGQAQVREMVDQLLGALGRQPAELNSAMGRHAARAIECKLVAE ACARWINQLKPGEPTYADFDVPASGAGAGLIEAPRGALGHWIEIADYRIANYQCVVPT TWNCSPRDDAGVPGPVESSLEGLPVADPQNPLEAARIVRSFDPCLACAVH" misc_feature complement(1113857..1115344) /locus_tag="Deba_0998" /note="Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Region: Complex1_49kDa; cl00417" /db_xref="CDD:193809" gene complement(1115752..1118595) /locus_tag="Deba_0999" /db_xref="GeneID:9493453" CDS complement(1115752..1118595) /locus_tag="Deba_0999" /note="COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: ppf:Pput_2963 ATPase involved in DNA repair-like protein; PFAM: SMC domain protein; SPTR: A5W4N1 ATPase involved in DNA repair-like protein" /codon_start=1 /transl_table=11 /product="SMC domain protein" /protein_id="YP_003806963.1" /db_xref="GI:302342434" /db_xref="GeneID:9493453" /translation="MSVQFSSIKVVNFRGLAGSIELDFSSPITLIYAPNGTGKTTLLQ AAELLFTRRIRSKRINADMNNCWSECACLTKKDSFLICGEISGEYVTCNDGKWKTDKS DQRDSDIVKSSLEYLNTFIKNSVLSAENHDYARLLELHQNHLWGKHFFYQDSLSTMVD SESSGLREQIFYDLLGMSHLNDINDIVKNFIRLLNANLKLEKRRAEKIKQLIDDTGDL PPDPARYEHIFSDTKKSINACILLLNIQIEPLGAVNDLHEIVDMKQRISNKLDRFVAH IEKRKQEIDYIRQLIDDITQLKEKAEASGADRHAQLDNLANVSTQIAQKKQQINTLNM EVASLAAQHSSVSDICEHVASTITSIVTYYPEISSKTVEEIFKTNQYYKIDLMARKSL LQSASYLLEVYPQAVENNYQLDRVRSESHKLSNLVKTETAKASILEGRLDQAQSKRAI LRSQLAKITDDLTQLKVYARNALPAIKTQSVCPTCGHDWKTAHDLFNAVSSSTDLGID YSSSKEAQLRQSLERIEQEICALTEDINTYNSNKERLSIIRQEINEREQKWNDYISSC KRLVDDFDFDDIHRSLKDIIRGLNVAGHLAQLWHDMESIHSALNISAPEKLSLLGLRD ALSRFFEVAAEELKAKDAAARQDLHRTEEELATLELAFEQASDRHTSAMEIINKLHHN EIAFKLAWESIGKHIPFSDEELLSLKHSIQADNDVASSARNELANIDACIFILTNGAK RESLQSSADKINECITLLNKKISSCNNIIKFNRQQFSQQRRAALSDLKDVMFALFSRM NTNSIFNKVDFSSHDNQINITDIVAYIENGVPLSPSKYFSRGQRQDLALSIFLARARE AGGTYFLDEPFAHLDDLNRVAVIDIVRMLAIEQKGKLKLVITTASDLLMNLLIAKFAN LGPLPGNDAPPLRVYRLLGNARNGVTAVKEALG" misc_feature complement(<1118281..1118583) /locus_tag="Deba_0999" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1115902..1118577) /locus_tag="Deba_0999" /note="ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: SbcC; COG0419" /db_xref="CDD:30768" misc_feature complement(1115875..>1116087) /locus_tag="Deba_0999" /note="ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The...; Region: ABC_ATPase; cd00267" /db_xref="CDD:72971" misc_feature complement(1116058..1116087) /locus_tag="Deba_0999" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1116001..1116018) /locus_tag="Deba_0999" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1115983..1115994) /locus_tag="Deba_0999" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1115893..1115913) /locus_tag="Deba_0999" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(1118576..1119199) /locus_tag="Deba_1000" /db_xref="GeneID:9493454" CDS complement(1118576..1119199) /locus_tag="Deba_1000" /note="KEGG: pmi:PMT9312_0494 thermostable carboxypeptidase 1; SPTR: Q31C40 Thermostable carboxypeptidase 1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806964.1" /db_xref="GI:302342435" /db_xref="GeneID:9493454" /translation="MHNACVDCIDSYANPVGLTLADSAADAANCTLWESDYAVVALVV IDEPIASKLKSSHGEGLAILSQKLGEKRRKHKIVDGYLILAIAHDMNTYRSPALDEEN RVVGSDDLHGTIQSLESDLYLCRKQIIWPVGDPDDPSAWEERIRRIPILSLPFAKSAA ANADSTLISLCKDDEILMRQLANASEDEIIILIESYIGDSDDVSTIL" gene complement(1119192..1121027) /locus_tag="Deba_1001" /db_xref="GeneID:9493455" CDS complement(1119192..1121027) /locus_tag="Deba_1001" /note="KEGG: ppf:Pput_2965 hypothetical protein; SPTR: C2GJC8 Putative uncharacterized protein (Fragment)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806965.1" /db_xref="GI:302342436" /db_xref="GeneID:9493455" /translation="MPRARGAKKGNGLYVHNVKVPGDFVDSNHLNLCLVQTPPPKRER LYDDSRPEYVNLVKEFLEQEIGDHFPGNKPIIIMFPELTFGVKDWYTINDLINKYKGK IVLIAGFGFTHGNKLNEIFTDRTRHHGTEIIKSWREDEEGFPGAKRRYNYGWCWLRYP ADGTEKLTTKSVIYVKHFPEQCAELGQIDYLDGGVSQVCIQTNGLDIWPIICSDFIYN GDGKTPTSEMVTVCNKTNLLPEATRKYILVAGQLYQKDPHASAWQDALNRIFTNLDIT AHNHFAIALANHAMGKHDKDESNDKLRNLSGIYIHADAAHIVKHEIKKGTRLHKNGNF VARLVRSTEPLLISGKLKFKTVPDAERHNWPATLHNQITTNHDHGLSYQLREYSEFEH QPYELARFICRNCSCGYGHHATKEIFSALCWLKLQIKTTIKGVQADNLIALIKSGMAP GSYSTSLCDKLHEHRDDLIKALRCISVLMYCNIAHLVAEETAQLRTNIGNIDINIWSD KSKHAYDMKNAMENSLTQYKKPLIMCIAPGMGHIDEDQITPGASSITHAPSESIGSPP RPFSIYLLPLTTIENCYQDATTSKINCMRLSGIIGMLSSGSVSYA" gene 1121223..1121432 /locus_tag="Deba_1002" /db_xref="GeneID:9493456" CDS 1121223..1121432 /locus_tag="Deba_1002" /note="KEGG: dac:Daci_1458 hypothetical protein; SPTR: A9BUJ4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806966.1" /db_xref="GI:302342437" /db_xref="GeneID:9493456" /translation="MYRPPNNHAEITVSQAKAIDAPLARLLAPLAGDTPLSARALRAH ARPGQPIDRLAVCAIIFEYLRFSGR" gene 1121432..1123003 /locus_tag="Deba_1003" /db_xref="GeneID:9493457" CDS 1121432..1123003 /locus_tag="Deba_1003" /note="COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: gsu:GSU3025 heptosyltransferase family protein; PFAM: glycosyl transferase family 9; SPTR: Q748H7 Heptosyltransferase family protein; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 9" /protein_id="YP_003806967.1" /db_xref="GI:302342438" /db_xref="GeneID:9493457" /translation="MRVLFVQTLAMGDLLLTTPALSALAQARPQAVIDVLANDSFARV LAGNPAVNRFIALPFTRLYALANQPDEARAVMETLALLARFTEDLAGGYDLVYNPCFN ELACALTVRTKGGQALGGDFTADGAMIMRGDWPNYCHNIFSGPAYNGLHLSDLHGLAL GLPSATRRPVFQARPEDQRQARALLTQLGWRPERPLIALQVGAGKADRRWPPEKWVEL GRLLGHKGLSVVLPGAPHEAALTARVAAGLGPTALDLAGRTDLGQLAAVLGHCRALIA NDTGTVHLAAALALPIVSLSLGKAQFRATGPYGPGNVVVEADLPCAPCLDAAACQAKH CWAAIAPADALAALEHVLGRAFQRPAGSRARFYRAQPDAAGLMDWLPLSPDPAQARHA AYRQAWLSVLRPGQWPRAPLSPSRPPASGPLAAFDALAAAALAALARIEAALGGQAPP ATARPAMDALNQATAEARRLGAAEALVRPLAMYLVQRLASLDEPRPERQIRLQRAVFA QTRAVAGLVWAALTG" misc_feature 1121435..1122379 /locus_tag="Deba_1003" /note="Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789" /db_xref="CDD:99964" misc_feature order(1122026..1122031,1122125..1122127,1122221..1122226, 1122260..1122262,1122269..1122274,1122281..1122283) /locus_tag="Deba_1003" /note="putative active site [active]" /db_xref="CDD:99964" gene complement(1123000..1124247) /locus_tag="Deba_1004" /db_xref="GeneID:9493458" CDS complement(1123000..1124247) /locus_tag="Deba_1004" /note="COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fjo:Fjoh_1898 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C3FB30 glycosyl transferase, group 2; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806968.1" /db_xref="GI:302342439" /db_xref="GeneID:9493458" /translation="MLRVVIHGGLDQRAQTAYAAHLGRSLPLESGALPAVEACFSATE GELLANLNQRPAHVFVSIGPRPKPLVMLPLADRRRWLHFDQAPRPDELLRAVHETYLS WAVFPPTAGRDEPLVSVYTPTFNPGQRLMEAYASLCGQGYRNWEWVLVDDGSSDGTPR LIERLARADHRIKAFFPQRRGQANIGWIKRQATGLCGGEILVELDHDDMLGADCLQEV VAAFAADPELGMVHSNFAEFLPDGSPHVYPEWEDRGRYRWTELQGRRYREALAYDVYG DVFGAGPVIQHMAVCPNHVRAFRASELWRLGGYNPRLVIADDYELMIRFFIGGKIGHI AKLLYLYRVQDNTWSRFNDLAKWLFNVIERRWRGPIEARVAELKAQGRWNPAPQGVLP AGHPALERAARANRQRGVVWQEV" misc_feature complement(1123063..1123911) /locus_tag="Deba_1004" /note="Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463" /db_xref="CDD:30811" misc_feature complement(1123219..1123905) /locus_tag="Deba_1004" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature complement(order(1123627..1123629,1123633..1123635, 1123798..1123800,1123876..1123878,1123882..1123884)) /locus_tag="Deba_1004" /note="active site" /db_xref="CDD:132997" gene 1124337..1125566 /locus_tag="Deba_1005" /db_xref="GeneID:9493459" CDS 1124337..1125566 /locus_tag="Deba_1005" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: rxy:Rxyl_3107 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Q1ARG4 glycosyl transferase, group 1; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003806969.1" /db_xref="GI:302342440" /db_xref="GeneID:9493459" /translation="MKILQVAHNFPPLSWAGTENYTLGLSLALRRRGVEVEVIHPVFG RGQGLERLEMLGLPTWRVGLDDEPTLVSLVDRRSAAIVCDVAQEGGFELIHAQHLLGF SAEVVYEAQRRGLPVVLTLHDFWIICPLIFGQTPSQKPCPGRGRQNCLNCLMEAVSQA GPRPDLLPTLERFWRERDAYLGQMLKLPSKVLAVSRFVARTMAARGLAGPNMAVMPAG VVPFTLGPNPGPDPADGLVLAFMGNIMPLKGPHLAARAIDGLAGARLEIHGKAVNQPY AAGLLALCEDKPETFSYHGPYDISQRGGVLARCHALVVPSLTESYCLTAREALFAGRP VLASDVGGIPEAVRHGQNGLLFPPGDWRSLRRLAQRLIERPEELAALTRGVRQPHTVT EDAEKYLSLYRRILASG" misc_feature 1124340..1125563 /locus_tag="Deba_1005" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature 1124340..1125548 /locus_tag="Deba_1005" /note="This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II); Region: GT1_ExpE7_like; cd03823" /db_xref="CDD:99993" gene complement(1125563..1126483) /locus_tag="Deba_1006" /db_xref="GeneID:9493460" CDS complement(1125563..1126483) /locus_tag="Deba_1006" /note="COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein; PFAM: glycosyl transferase family 2; SPTR: Q748H9 glycosyl transferase, group 1/2 family protein; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806970.1" /db_xref="GI:302342441" /db_xref="GeneID:9493460" /translation="MTQSDIATKSVQPAYDVSIIIPVFNRAAFTLRCLQTLAQNSDGP SYEVIIVDNASTDGTAALLAGLGGDVTVISNQHNLGFAKACNQGAQAARSGNLLFLNN DTEPQAGWLPPLLEVLARERRAAVVGARLIYPHGNRVQHAGVAFRPNGAPYHIFQGLD AEHPVVNTPERFQAVTGACLLIRAEAFFAAGMFDEAFVNGFEDIDLCLKVGRMGWTIH YEPRGKVLHHEGISPGRKAHDVPNMLLFMERWAGVVEPDENRHYAKLGLRLSYNDDFT RCTIHHLLDPSRTRTISLDQGGRADERPGV" misc_feature complement(1125797..1126429) /locus_tag="Deba_1006" /note="Subfamily of Glycosyltransferase Family GT2 of unknown function; Region: GT_2_like_c; cd04186" /db_xref="CDD:133029" misc_feature complement(order(1126175..1126180,1126325..1126327)) /locus_tag="Deba_1006" /note="Probable Catalytic site [active]" /db_xref="CDD:133029" misc_feature complement(order(1125869..1125871,1125875..1125877, 1126175..1126177)) /locus_tag="Deba_1006" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:133029" gene 1126955..1128114 /locus_tag="Deba_1007" /pseudo /db_xref="GeneID:9493461" gene complement(1128175..1129935) /locus_tag="Deba_1008" /db_xref="GeneID:9493462" CDS complement(1128175..1129935) /locus_tag="Deba_1008" /note="COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterProIPR013105:IPR011717:IPR011990:IPR019734:IPR 013026; KEGG: cbh:CLC_2580 hypothetical protein; PFAM: hypothetical protein; Tetratricopeptide TPR_4; SPTR: C6PUP8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806971.1" /db_xref="GI:302342442" /db_xref="GeneID:9493462" /translation="MAKNKRKGKTAAPRRPAQRTRPAQPATSPADQATVVDQALADPN IDKAALDQLAAKYMAAKDYDQACRVFKRASQLRPDDPQPLTDMATSLAMTGRLDEARR AMGRAVGLAPDNPKYLANMAKVMIMQGDLTAAREVIDRAMPLADEKRAAELRGLLGLC AQTPAGQAQAVAPSPSPWPPAQVAAPTAPAHADTVQRQPRRPTPLVAASRPLNILFVQ EAPCIRNYKTASALRARGHKVCLAYTRATLSQMYKGLSDEVYDRCVRLTNNRHLWDIS AKFDLVHCHNEPDVLTVAALAGEAPVIHDTHDLISLRAGGDQNLAFFEGVANRGAHGR VYTTPYQRDAALALYGVKGPSLVFYNYASAGDLPKRFLPKLSAQDGQTHIVYEGGIGG NGHRDFIDLFAQLTQGGLHVHVYPVHFDQAMHQRLSAIPRMHYHQPVSPTEIMEVMSQ YDIGIIPFNIVKGNKQFLDSTIANKLFEYLAAGLPVLASPLQSYVDFFKLNNVGKVFH DAAEAIAATPELLRIAASQDLTAHAKTYDGEITRLEDFYIQIIDSFHAGEAAPSQAAL ETATPPSVTEWLGGAFGFSQ" misc_feature complement(1129504..1129791) /locus_tag="Deba_1008" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(1129552..1129557,1129564..1129569, 1129576..1129581,1129657..1129662,1129669..1129674, 1129678..1129683,1129768..1129773,1129780..1129785, 1129789..1129791)) /locus_tag="Deba_1008" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1129513..1129515,1129522..1129524, 1129534..1129536,1129570..1129572,1129615..1129617, 1129624..1129626,1129636..1129638,1129672..1129674, 1129717..1129719,1129726..1129728,1129738..1129740, 1129774..1129776)) /locus_tag="Deba_1008" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(1128370..1129299) /locus_tag="Deba_1008" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" gene complement(1130112..1130906) /locus_tag="Deba_1009" /db_xref="GeneID:9493463" CDS complement(1130112..1130906) /locus_tag="Deba_1009" /note="COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR011005:IPR000489; KEGG: dal:Dalk_4619 dihydropteroate synthase DhpS; PFAM: dihydropteroate synthase DHPS; SPTR: B8FNL6 Dihydropteroate synthase DHPS; PFAM: Pterin binding enzyme" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase DHPS" /protein_id="YP_003806972.1" /db_xref="GI:302342443" /db_xref="GeneID:9493463" /translation="MIIAADNLTTSRPSVRRAVENRDEAFIAALCQKAAAAGAHWLDV NPGYLAPAKRAEVWRFLIETAEKACSLRLILDPPEPETLAVALAFCSRPPVLNMATAQ AERLDPVVALAAAHDLPMIAATIDRAVPLGADERLALAAHILGRAQAGGVDPEKLYLD PMVMPLALQDGQTHAKAVLETLRALPYLAAPAPRGFIALSNLTTKSAGADTRFAGGPF LAAAFGAGLHAVMLDALDPALMAMARLCQVFDGQRVFAAAECRPPA" misc_feature complement(<1130364..1130861) /locus_tag="Deba_1009" /note="Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a...; Region: Pterin_binding; cl00219" /db_xref="CDD:197403" misc_feature complement(order(1130427..1130429,1130538..1130540, 1130610..1130612,1130616..1130618,1130679..1130681)) /locus_tag="Deba_1009" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29544" gene 1131012..1132190 /locus_tag="Deba_1010" /db_xref="GeneID:9493464" CDS 1131012..1132190 /locus_tag="Deba_1010" /note="COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674:IPR006261:IPR003607; KEGG: dol:Dole_1124 metal-dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Q1NXY4 Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase" /codon_start=1 /transl_table=11 /product="deoxyguanosinetriphosphate triphosphohydrolase" /protein_id="YP_003806973.1" /db_xref="GI:302342444" /db_xref="GeneID:9493464" /translation="MPGHDLLRLRQELELREQAALSPLACPSVAALRRRLDPVSDSGH RLAFAVDADRVLHSLAYTRYIDKTQVFSLVDNDHISHRVLHVQLVSKIGRTVGRLLGL NEDLIEAIALAHDLGHPPFGHDGEGYLSALCQEHGLGPFLHNVQSVRFLESVERGGRG LNLSLQVLDGVLCHDGEVCDNRLTPWPGKDFAALDAELAAKQADPGLSLRPMTMEGCV VRLCDAVAYVGRDLEDAINIGLIDRDDLPAEVARTLGRTNGAIVYRLVEDLAQNSLGR PHLAFSDEVGQALAQLKRFNLERIYLNPKIKTQHHKIAEIYRHLFEQYLGDLGGQRRQ SPVFAHFLDAMDDDYRQATPAAGVVRDFISSMTDDYFLRCYRRLVWPERLPSRFGASG " misc_feature 1131075..1132145 /locus_tag="Deba_1010" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene 1132448..1133293 /locus_tag="Deba_1011" /db_xref="GeneID:9493465" CDS 1132448..1133293 /locus_tag="Deba_1011" /note="COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: rca:Rcas_0546 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A7NGS9 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003806974.1" /db_xref="GI:302342445" /db_xref="GeneID:9493465" /translation="MPGSSSALHPPAGPPGGQTPILKIEDLHLRFGGLAALAGVGFEV AFGVIQAIIGPNGAGKTCILNCICRFYHPQRGRVIFMGQDISRLPTHAVAGLGIARSF QNIELFKGMTVLDNIKLGRHAHLKSGFLSGGLYLGKARREEMAVRAEIEEKIIDLLEI ESIRKKVVGALPYGLQKRVELARALAMKPKLLLLDEPMAGMNLEETEDMARFILDINQ EWGVTVVLIEHDMGVVMDISDDVVVLDFGTKIAQGPPAAVARNPHVIQAYLGADDAAH SKLGV" misc_feature 1132502..1133260 /locus_tag="Deba_1011" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 1132511..1133239 /locus_tag="Deba_1011" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 1132607..1132630 /locus_tag="Deba_1011" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(1132616..1132621,1132625..1132633,1132754..1132756, 1133030..1133035,1133132..1133134) /locus_tag="Deba_1011" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 1132745..1132756 /locus_tag="Deba_1011" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 1132958..1132987 /locus_tag="Deba_1011" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 1133018..1133035 /locus_tag="Deba_1011" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 1133042..1133053 /locus_tag="Deba_1011" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 1133120..1133140 /locus_tag="Deba_1011" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 1133317..1135334 /locus_tag="Deba_1012" /pseudo /db_xref="GeneID:9493466" gene 1135366..1136370 /locus_tag="Deba_1013" /db_xref="GeneID:9493467" CDS 1135366..1136370 /locus_tag="Deba_1013" /note="COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: adg:Adeg_1596 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C9R8R2 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_003806975.1" /db_xref="GI:302342446" /db_xref="GeneID:9493467" /translation="MENLFGLIITGLAIGSVYALVAMGFALIYKSTSIINFAQGEFVL VGGYVALWLYTDLRGLAFEALAQARPEVFAALSPAGWQLVVVAAAFLLTIVAGLVMVL ALERLILRPMIGEPIISVIMVTIALATVLKGLVTLIWETQIRNFDPPIFQQQDGLRLG VITLPGVYLWIFFFAALFLVSFALFFKFTRVGVSMRAVAADQQVAQSMGISVKTVFAI SWSIGAVVAVVGGMLVGNINGVNIELSHFGLTVFPAVILGGLESVGGAIIGGLVIGLV QYLGPELVGQAVALYNRAFDAALVTPGNLEAVLPFVVLIAILMVRPYGLFGIKEIERV " misc_feature 1135396..1136343 /locus_tag="Deba_1013" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 1135972..1136028 /locus_tag="Deba_1013" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 1136387..1137439 /locus_tag="Deba_1014" /db_xref="GeneID:9493468" CDS 1136387..1137439 /locus_tag="Deba_1014" /note="COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dba:Dbac_2284 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C7LQG4 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_003806976.1" /db_xref="GI:302342447" /db_xref="GeneID:9493468" /translation="MPCGLFFETYEKDEAIFQTTFLRVAMAAFAVLLLAFPFFSDWLS GLTNLYWLGIMTHICIFVLGAQGLNLLTGFTGQISLGHGAFMAVGAFTAGVLHMDLGW NFLLAILAGGLMAAALGMIFGVPSLRLRGLYLAIATLAAQIIIIWLLRGVFEAGAVEV SDATLFGFSFDTDQRKYYLCLFFAALGTLYLKNLMRTRTGRAFVAVRDRYLSAEVIGV NLFKYRILSFGISSFMVGLAGGLWAFTENAVTDEAFGVALSVKYLAYIIVGGLGQVTG AIFGVTFLELLHWLLEVPTDALSRIFPNIFEKLASLREIVFGLIVIVFLIFEPDGLSA RWRTIRSYWKLWPFSY" misc_feature 1136558..1137292 /locus_tag="Deba_1014" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 1137017..1137073 /locus_tag="Deba_1014" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 1137618..1138784 /locus_tag="Deba_1015" /db_xref="GeneID:9493469" CDS 1137618..1138784 /locus_tag="Deba_1015" /note="COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: dma:DMR_09050 ABC transporter substrate binding protein precursor; SPTR: C4XK41 ABC transporter substrate binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter substrate-binding protein" /protein_id="YP_003806977.1" /db_xref="GI:302342448" /db_xref="GeneID:9493469" /translation="MKKGLLFLALAALVCLTMQPLAATAAEEIPVGGIFDITGATSKV GADYAKGVRAACDYVNSLGGVNGRMINLESADYAYAIPKALNLYKKYVNVNKVFVIQG WGTGDTNALTPKLKKDEVIFMSASYDANLTNPANNPYNFFIGTDYSTSIRLAMQFAKD NGAKKVLFCYPDHPYGRAPIAAGKEYAQMLGLEIGPDEMVDLTATDATQQLLRMKKFA PDYVWLGGTTPSCAVVIKGAASILPEAKFLINCWGFDSNLPLLAQGAAEGRAFGILPV VPYGADVPGMKAMMAWTKGEPHTLHFVKGWVSVLVMAEGLKRAGDKLSGPGLKAALET LTDFETGGLCAPITYTSTDHRPNTTCGIGAIKDGKVVVLVGKVSMPREAKYIGN" misc_feature 1137681..1138718 /locus_tag="Deba_1015" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1137708..1138682 /locus_tag="Deba_1015" /note="Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011" /db_xref="CDD:195943" gene 1138841..1139644 /locus_tag="Deba_1016" /db_xref="GeneID:9493470" CDS 1138841..1139644 /locus_tag="Deba_1016" /note="COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: cag:Cagg_2428 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B8G3C8 ABC transporter related; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="branched-chain amiono acid ABC transporter ATPase" /protein_id="YP_003806978.1" /db_xref="GI:302342449" /db_xref="GeneID:9493470" /translation="MALLSVNNIEVIYDDVILVLKGLSLEVEEGAIVALLGANGAGKT TTLKAISGLLKTEEGEVTDGAIVFDGQRINDLEPEKIVRRGVFQVMEGRRVFVDLTAR ENLIAAAHTQKCTRRQLDERIEQVYAYFPRLKERQNGLAGYLSGGEQQMLVIGRGMMA RPRLMMLDEPSLGLSPLLVGEIFEIIARLNRELGTTILLVEQNARMALNIASHGYIME NGKIVLDDTTEKLKNNEDVKRFYLGVGEEGQKRSYRQVKHYKRRKRWLS" misc_feature 1138841..1139572 /locus_tag="Deba_1016" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 1138850..1139542 /locus_tag="Deba_1016" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 1138949..1138972 /locus_tag="Deba_1016" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(1138958..1138963,1138967..1138975,1139111..1139113, 1139342..1139347,1139444..1139446) /locus_tag="Deba_1016" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 1139102..1139113 /locus_tag="Deba_1016" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 1139270..1139299 /locus_tag="Deba_1016" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 1139330..1139347 /locus_tag="Deba_1016" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 1139354..1139365 /locus_tag="Deba_1016" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 1139432..1139452 /locus_tag="Deba_1016" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 1139680..1140963 /locus_tag="Deba_1017" /db_xref="GeneID:9493471" CDS 1139680..1140963 /locus_tag="Deba_1017" /note="COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: dvm:DvMF_2446 phenylacetate-coenzyme A ligase, PFAM: AMP-dependent synthetase and ligase; SPTR: B8DMU7 phenylacetate-coenzyme A ligase, PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003806979.1" /db_xref="GI:302342450" /db_xref="GeneID:9493471" /translation="MTAIDRQSGALRPDLEFIDPQARRQYLDGKVAAIVAHAFEHAPA FARRMADAGLTPADIGGVDDLARLPLLRKSDLVELQKKAPPFGGLSHLTTAGLRRVYV SPGPIYEPAENSLADDRWAQAFYAAGFRPGDLCQVSFNFNLAPFAFWLDESLRQLGCA CLPAGVGNGEIQVRAMKDLGVTGYLGTPSFLATLADKAEEMGLDPRRDLSLAVGFVAA EMLPESLRQSLEERFGMIVRQSYGTADVGCLSYECRHLGGMHLAQGCLTQIVDPDTGL PLGPGQPGEVVATVFNPAYPLIRFATGDLSFIDETPCPCGRTSAKLGRIMGRVDQMTK VKGMFVHPGGVRQVVDKFPQVAAYQLVVERQGHNDVLTLVCEVEDDSGGHDELKARMA AAMKDILRLSGEVRLQKRGGLAPGCKVIDDRRKWD" misc_feature 1139710..1140894 /locus_tag="Deba_1017" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 1141039..1141869 /locus_tag="Deba_1018" /db_xref="GeneID:9493472" CDS 1141039..1141869 /locus_tag="Deba_1018" /note="COGs: COG1427 periplasmic solute-binding protein; InterPro IPR003773; KEGG: gur:Gura_1828 hypothetical protein; PFAM: protein of unknown function DUF178; SPTR: Q74BM4 Putative uncharacterized protein; PFAM: Putative periplasminc binding protein (DUF178)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806980.1" /db_xref="GI:302342451" /db_xref="GeneID:9493472" /translation="MSQPLRLGRIDFVNILPVHLRLAATPALFIEARGVPSALNRQLR QGLLDVSVISSVEYALHADDYLLLPDLGICSDGPVGSVTLFSRQPMDLWAGRPVEAPF ESDTSVALARVLLAHLWRLDCPLAPEGQALDPAATLRIGDRALQEAASGRWAHSWDMG QQWRELTGLPFVFAVWAVRRPVAQARPAEVAALHGRLLAAKAAGVADLPACAAEASRL LGGSVEGYLRYYKLLSYDLGPRFRQGLGRFFAFLAAMGQIERAPRLCFFGADGPQTAT " misc_feature 1141048..1141824 /locus_tag="Deba_1018" /note="Predicted periplasmic solute-binding protein [General function prediction only]; Region: COG1427" /db_xref="CDD:31616" misc_feature 1141051..1141800 /locus_tag="Deba_1018" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1142170..1144548 /locus_tag="Deba_1019" /db_xref="GeneID:9493473" CDS 1142170..1144548 /locus_tag="Deba_1019" /note="InterPro IPR013216; KEGG: cbh:CLC_2580 hypothetical protein; PFAM: methyltransferase type 11; SPTR: C6PUP8 Putative uncharacterized protein; PFAM: methyltransferase domain; glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003806981.1" /db_xref="GI:302342452" /db_xref="GeneID:9493473" /translation="MKAAGYAAEANAAFGDDNERRADLGSEPAKKRNVLFVQESPCIR NYKMATALRKRGHRVTLAYGRARLSQVYPGLSDDVYDELIHLDGFRELWDIAKGFDVV HCHNEPDFLTVAALGCAAPVIHDTHELISLRANGDKNLAFFEGLANRAAAGRVYSTAY QMREAQRLYGVEGPSEVVHNYVVEDDLPKNFKPKLSRGDGQLHLVYEGGVGAQGHRDY RELFFALAGLGVHVHIHPTAHDPELAKAFGRDPRLHYHQPLSPKRIIEEMTQYDVGLI PSNMERGDKRFLDSTIANKLFEYLAAGLPVIASPLQSYIDYFEATPAGKVFHSPAEAV AAARELVERARNTDFTVFAKSHEAEIWRVERLYDQVLGQACVSPRPQAVAVAQAEARI HVAATVHDLALAATRAAAPERWPADPAAGRQPDWDAWATRRYQEFYRGRPEGPPVVDQ RITAILGRYLGKEIETAVDLGCGQGQYADFLQGKGKMVLGLDVVDRLAFPQVRFRGQP AWRLDEPVDLAYAIDLLQHVPESLIEPTIKAIADHCRIFFGAVALGPSGEKDSDGQEM HQTIEPLGWWLRRLSAAFAEVKTLAVTKDWFWAECRHEHMPIFDASRMNGYQGWSQVT GQAVTPYRDLWNRHARSLPWGGKVLYIGSNHLCQQYYSRQYFMAQEVLHIDPDPRNKP DVVTIGEDLSMFPDASVDGVAFFGTPYLMNDPLRFVREARRVLKPGGLFSGSFNGPQS RWQGVTYVKGKVKTADEIWHFQRDVLDLFDDWTVVYWARQGDEYYHLSTVKM" misc_feature 1142299..1143096 /locus_tag="Deba_1019" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" misc_feature <1144177..1144362 /locus_tag="Deba_1019" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1144553..1145602 /locus_tag="Deba_1020" /db_xref="GeneID:9493474" CDS 1144553..1145602 /locus_tag="Deba_1020" /note="KEGG: afw:Anae109_4343 hypothetical protein; SPTR: A7HIH5 UPF0078 membrane protein Anae109_4343" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806982.1" /db_xref="GI:302342453" /db_xref="GeneID:9493474" /translation="MPIPDANKLVDEAVGLGRAMFDSPLWDADEKKWRRHIDLDSGQV DASQHFYYDICNIYALARAMALSGQMERFREGWLQAVGWLFWLVNSKGAIGYTSFDVT GPRDQYSFALAPAALAEAHRLTGRPALLRKAGELFGAYRAAFPLGKVRNVQASNHFIL SALSLYRAAGQAAYLEAAQAEAEHLLAACRLAGGPAAGCFTDDQRLTAFPRHVYATWA LVELNHLRPDQRLQQACAQSMDWWRANQLADGGFYFFYDAQAGRWVDQTVYSVHQKGM LLLSAWEINRLCQGRFDEMIRRAMATCDDPRWQYASPEGWRLYRRSMPERSLVYSYEL GWEILGHLLGTGWDQ" gene 1145626..1147803 /locus_tag="Deba_1021" /db_xref="GeneID:9493475" CDS 1145626..1147803 /locus_tag="Deba_1021" /note="KEGG: dal:Dalk_1659 hypothetical protein; SPTR: B8FAR1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806983.1" /db_xref="GI:302342454" /db_xref="GeneID:9493475" /translation="MKKLLFVARRLDAHAKQLLAELPKRGFATHVLGAGPAGAGEAAA MGAQFAQAASLADVIYLLLESDDADFAALGWDYAAHRGKLVVDLARCSANRAEPAAGR FLAKWRPMAVARHLRQTRGPAGETLPLETLLAADYLAYSFMPKSLLSDLGWFLRKASG DRAGQRPSAMAAELLAAPADDQRAREAAVELLAQEPGYPPALMRLALEAASRSGAVPA QLDPSKDADPLTVFSLLALGRHMAPGSENARQIAKIAEHVWGPPADGQKGKRILLFVV YKQRDLFIDLILRYHLERLGHRVIMRSLGDDPAASLVELLPDVVIWGAKTTPYQVQLA RFARDRNIVSIVRREEAGTARKRWDQLSPTVRKWSLGNIDYAPLVDLELVFGQDFAEI LREEGHMPPDRCQVVGAMTFDPYFLPELSRFMPGRGAFCRQLGLDPAKKIMLLLTPWT YADRDPGAAIPEAKGAAADGGATAEIQRTMALHKDGRRGWLEFLEALYHDKGRDWNLI LKVHPGERAEAYGEFFRARGLDIKLVVSGYVVEMLNHADLLVHAGSTTAIEAHFLGKP SLAYWVKAPQNSPIYQLTPYANSYEEFEALFQGLDLTRGNADEAVIASLEKDLYGRMD GQACLRAARIIDEFLDGRPTRPFRHLQDKVVGQPRRPDDPYGTNITPQEIDYYYPMVK QCLDAKEGRPAPSPRPGRSSAGPAAPGAAAGQSPASEATGQRP" gene 1147818..1148837 /locus_tag="Deba_1022" /db_xref="GeneID:9493476" CDS 1147818..1148837 /locus_tag="Deba_1022" /note="COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR016040:IPR003869:IPR020025; KEGG: dsa:Desal_3630 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD; SPTR: C6BTJ5 polysaccharide biosynthesis protein CapD; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 4,6-dehydratase" /protein_id="YP_003806984.1" /db_xref="GI:302342455" /db_xref="GeneID:9493476" /translation="MFDDKTILITGGTGSFGRKCVQMMTERYRCRKIIVFSRDEFKQF EMANQMVGDRYACLRFFLGDVRDKDRLKRALGGVDYVIHAAAIKQVPAAEYNPFEAVR TNIVGAQNLIDAAIDMGVAKVMALSTDKAANPINLYGATKLCSDKLFVAGNAYVSQDR PTRFSVVRYGNVAGSRGSVIPLFLRKRAEGELPVTDVRMTRFWITLEHAVEFVFNSMA QMKGRELFVPKLPSMRILDLVEAVGPGCKVKVVGIRPGEKIHETLIPRDESFRTVEYP EHYVVYPSTPTAGGLPLDGGGRLVAEEFDYNSGDNPDCLTVEEIRRQVELLFPHGVQR PDEGY" misc_feature 1147818..1148780 /locus_tag="Deba_1022" /note="UDP-N-acetylglucosamine 4,6-dehydratase; Region: PseB; TIGR03589" /db_xref="CDD:132628" misc_feature 1147827..1148642 /locus_tag="Deba_1022" /note="UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs; Region: UDP_invert_4-6DH_SDR_e; cd05237" /db_xref="CDD:187548" misc_feature order(1147848..1147850,1147854..1147865,1147926..1147931, 1148004..1148012,1148067..1148075,1148079..1148081, 1148124..1148126,1148193..1148195,1148241..1148243, 1148322..1148333,1148340..1148345) /locus_tag="Deba_1022" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187548" misc_feature order(1147929..1147931,1147935..1147937,1147947..1147949, 1147959..1147961,1147998..1148009,1148016..1148018, 1148025..1148027,1148073..1148084,1148091..1148093, 1148103..1148105,1148112..1148114,1148121..1148123, 1148343..1148348,1148361..1148363) /locus_tag="Deba_1022" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187548" misc_feature order(1148079..1148081,1148199..1148207,1148229..1148231, 1148325..1148330,1148346..1148354,1148361..1148366, 1148394..1148402,1148412..1148414,1148418..1148420, 1148520..1148522,1148577..1148579,1148586..1148588) /locus_tag="Deba_1022" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187548" misc_feature order(1148127..1148129,1148199..1148201,1148229..1148231, 1148241..1148243) /locus_tag="Deba_1022" /note="active site" /db_xref="CDD:187548" gene 1148866..1149828 /locus_tag="Deba_1023" /db_xref="GeneID:9493477" CDS 1148866..1149828 /locus_tag="Deba_1023" /note="COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: phe:Phep_3568 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: C4V428 Aldo/keto reductase; PFAM: Aldo/keto reductase family" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="YP_003806985.1" /db_xref="GI:302342456" /db_xref="GeneID:9493477" /translation="MTSASTDMTGLADAVAPGRAGAGGAVRLILGAAQLGMAYGLANR LGRPDEAQAHAIIGLAWISGVEAFDTAQHYGQSEQVLGRGLARLGVSGQAKVVTKLAP SLDPRDDAAVSAALERSRRLLGQERLWGCLLHNAAWLANWRNGPEPALRRALDEGVVA NLGVSVYEKAQARQALETPDVRMIQAPLNAWSADPEWEDILALARQSGRMVFLRSVYL QGLLLLTPEEAAARLPEAGPALRRWRDLARWLDCSPQELALRFAAGFGWPLVVGLESV EQLRENLALAQAAPLTPDERRHVAAAMKPLITERLIDPRRWPAA" misc_feature 1148974..1149777 /locus_tag="Deba_1023" /note="Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248" /db_xref="CDD:189468" misc_feature 1149007..1149771 /locus_tag="Deba_1023" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature order(1149070..1149072,1149085..1149087,1149160..1149162, 1149265..1149267,1149277..1149279,1149358..1149363, 1149418..1149420,1149505..1149522,1149628..1149630, 1149679..1149684,1149697..1149699,1149706..1149711) /locus_tag="Deba_1023" /note="active site" /db_xref="CDD:119408" misc_feature order(1149070..1149072,1149085..1149087,1149160..1149162, 1149265..1149267) /locus_tag="Deba_1023" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene 1149842..1150630 /locus_tag="Deba_1024" /db_xref="GeneID:9493478" CDS 1149842..1150630 /locus_tag="Deba_1024" /note="COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog; InterPro IPR003329; KEGG: rpf:Rpic12D_0583 acylneuraminate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; SPTR: C6BDF3 Acylneuraminate cytidylyltransferase; PFAM: Cytidylyltransferase" /codon_start=1 /transl_table=11 /product="acylneuraminate cytidylyltransferase" /protein_id="YP_003806986.1" /db_xref="GI:302342457" /db_xref="GeneID:9493478" /translation="MMLAILQARMGSSRLPGKVLMPILGRPMLELELERLGRARCLDK IIVATSDHPADEPIAALADRLGLECFRGSQDDVLDRYYQAARRWRPRYVARITGDCPL IDPALVDRLADFFLEGGHDLACNTIRPTFPDGLDAWVMTFEALENAWRNAVLPSEREH VTQYIQNRPRQFKLGNLEGRPDLSHLRWTVDEPEDLLFARQVYQALYPRNPAFTTQDV LDLLAERPALGEINQRFARDEGLLKSLEQDRRWLDEHATDQPQG" misc_feature 1149848..1150540 /locus_tag="Deba_1024" /note="SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat; Region: GT2_SpsF; cd02518" /db_xref="CDD:133011" misc_feature order(1149860..1149862,1149866..1149868,1150136..1150138) /locus_tag="Deba_1024" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:133011" gene 1150599..1151927 /locus_tag="Deba_1025" /db_xref="GeneID:9493479" CDS 1150599..1151927 /locus_tag="Deba_1025" /note="COGs: COG0001 glutamate-1-semialdehyde aminotransferase; InterPro IPR015424:IPR005814:IPR015421; KEGG: nwi:Nwi_2388 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: Q3SPZ9 Aminotransferase; PFAM: Aminotransferase class-III" /codon_start=1 /transl_table=11 /product="aminotransferase class-III" /protein_id="YP_003806987.1" /db_xref="GI:302342458" /db_xref="GeneID:9493479" /translation="MNTPRISPKASALAEKAKGLIPGLSQLLSKRPDQFAPGSWPVYY SRAKGCQVWDLDGRSYLDMGVSAVGATVLGYADDEVNQAVTRAVELGSNCSLNCPEEV ELAERLCQLHPWAQAVRYARTGGEAMAVAVRIARAHTGRDIVAFCGYHGWHDWYLAAN LHQQDALEGHLLKGLSPKGVPKGLTGTALTFRYNHPEELEAIVARHGDKLAAVIMEPV RNYWPLDGFLQKARDLARQAGAVFVFDEISAGFRLATGGAHLALGVEPDMAVLGKALG NGFAIAAIMGRAAVMDAVHETFISSLNWTERIGPCAALCVLRKHQRENVGEHLVAIGQ QVQQGWARIAQDRGVTLAISGIAPMSHFSFAEDDPLLWKSVFVQMMLERGYLTNTYFY PMLAHRPAQVDDYLAAMDQVVAEMKALHEAGRLGQALIGPVASSGFTRLT" misc_feature 1150620..1151852 /locus_tag="Deba_1025" /note="Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]; Region: HemL; COG0001" /db_xref="CDD:30350" misc_feature 1150701..1151837 /locus_tag="Deba_1025" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(1150968..1150973,1150980..1150982,1151244..1151246, 1151331..1151333,1151340..1151342,1151412..1151417) /locus_tag="Deba_1025" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 1151415..1151417 /locus_tag="Deba_1025" /note="catalytic residue [active]" /db_xref="CDD:99742" gene 1151940..1152788 /locus_tag="Deba_1026" /db_xref="GeneID:9493480" CDS 1151940..1152788 /locus_tag="Deba_1026" /note="COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR016040:IPR001509; KEGG: hba:Hbal_0199 dTDP-4-dehydrorhamnose reductase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: A3Z4H1 Hypothetical dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_003806988.1" /db_xref="GI:302342459" /db_xref="GeneID:9493480" /translation="MRVLITGATGLLGGRLLPAWRQSGMDVVAVGHAAAADAAVDLTD QKATWRLLEERRPEVVVNLVALSNVDACEQDPQRAYLLNVRTAQNLAGWLAKRPGAAL VHISTDHVYDGPGAHAEPDVTLLNIYAYSKFAAELAVLAVGGTALRVNFFGRSLTAGR MSFSDAIIQGLSAGQPMGFFTDVFFSPLSLDTLAAMIARVVADPAPGVFNLGAASGLS KRDFAWRVAQRMGLTLAGAREITLAQAGLRARRPTGMVMAVGKFEKRYGVTLPSLEAE IESATL" misc_feature 1152063..1152761 /locus_tag="Deba_1026" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(1152126..1152134,1152252..1152260,1152321..1152323, 1152333..1152335,1152384..1152395) /locus_tag="Deba_1026" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1152186..1152188,1152258..1152260,1152321..1152323, 1152333..1152335) /locus_tag="Deba_1026" /note="active site" /db_xref="CDD:187535" gene 1152799..1153881 /locus_tag="Deba_1027" /db_xref="GeneID:9493481" CDS 1152799..1153881 /locus_tag="Deba_1027" /EC_number="2.5.1.56" /note="COGs: COG2089 Sialic acid synthase; InterPro IPR006190:IPR013132:IPR013974:IPR013785; KEGG: fnu:FN1684 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; PRIAM: N-acetylneuraminate synthase; SPTR: A3Z4G4 N-acetylneuraminate synthase; PFAM: SAF domain; NeuB family" /codon_start=1 /transl_table=11 /product="N-acetylneuraminate synthase" /protein_id="YP_003806989.1" /db_xref="GI:302342460" /db_xref="GeneID:9493481" /translation="MEYASFLQIENKRVALDRPTYFVADVAANHDGDLGRAKELIALA KEAGADAVKFQHFSAPTIVSDHGFQALGARQSHQAAWGKSVYQVYAAASLDPAWTPEL KKTCDSVGVAFFTSPYSKELVDAVDPFVPAFKVGSGDITWHEIIDHMARKGKPMLLAT GASHLEEVRQAVAVALAVNPNLALMQCNTNYTAKAENFRHVNLNVLKTYAAMYPGMVL GLSDHTLGPSTVLGAVALGARVIEKHFTDDRRREGPDHPFSEDPASWREMVLRVRELE AALGSGVKQVADNERETVVLQRRAIRLAVDLEAGATLAPSHLSVLRPCPGDGLPPYLL PEVLGRRLAHEMKKGEHLRWTDLDWR" misc_feature 1152817..1153869 /locus_tag="Deba_1027" /note="Sialic acid synthase [Cell envelope biogenesis, outer membrane]; Region: SpsE; COG2089" /db_xref="CDD:32272" misc_feature 1152916..1153647 /locus_tag="Deba_1027" /note="NeuB family; Region: NeuB; cl00496" /db_xref="CDD:186036" misc_feature 1153690..1153869 /locus_tag="Deba_1027" /note="SAF domain; Region: SAF; cl00555" /db_xref="CDD:193866" gene 1153857..1154564 /locus_tag="Deba_1028" /db_xref="GeneID:9493482" CDS 1153857..1154564 /locus_tag="Deba_1028" /note="COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sye:Syncc9902_0083 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Q2BI18 glycosyltransferase; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806990.1" /db_xref="GI:302342461" /db_xref="GeneID:9493482" /translation="MDRPGLAIVIPAYNERDSIAEVARAAAGHGVVIVVDDASGDGTA QAARQAGALVVTHALNQGYDAALNSGFAKAAELGCAAVVTIDADGQHPAGLLGLFAAR LADGVDVVAGCRPSKPRLAERLFGLATRLLCGVKDPLCGMKGYRMSLYRELGHFDSYG SIGSELLLFAARNEKRIEQIPVPIAARRGRSRFGAGLGSNIRIFRAMVKGLARWRSQS WTASCGARKATVTPKGR" misc_feature 1153878..1154366 /locus_tag="Deba_1028" /note="DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; Region: DPM_DPG-synthase_like; cd04179" /db_xref="CDD:133022" misc_feature order(1153887..1153889,1153893..1153895,1154118..1154120) /locus_tag="Deba_1028" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133022" misc_feature order(1153965..1153967,1154115..1154120) /locus_tag="Deba_1028" /note="Putative Catalytic site [active]" /db_xref="CDD:133022" misc_feature 1154112..1154120 /locus_tag="Deba_1028" /note="DXD motif; other site" /db_xref="CDD:133022" gene 1154510..1155196 /locus_tag="Deba_1029" /db_xref="GeneID:9493483" CDS 1154510..1155196 /locus_tag="Deba_1029" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sye:Syncc9902_0043 methylase involved in ubiquinone/menaquinone biosynthesis-like; PFAM: methyltransferase type 11; SPTR: Q3B0W0 methylase involved in ubiquinone/menaquinone biosynthesis-like; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003806991.1" /db_xref="GI:302342462" /db_xref="GeneID:9493483" /translation="MDSILWREESDRYTQRALKAANGDVDRLFAHHRDLARQGREVMD ALGFTPTRVLDLGCGYGGGVQAFAEQYPDAEFEGVDPGAESIATARRLVSHQRARFTV GFGHDLPQADESFDLVLLVMVLQWVPRAYLARTIAQAERVLRVGGMILLWDFAPFQMV MSQSRHNDQVYIFKNDYKEMFTALPWLRLVHHYVKRMEMGPGYQFSSSFIKKCPIEQI YALTPGPTEN" misc_feature 1154663..1154971 /locus_tag="Deba_1029" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(1154675..1154686,1154690..1154698,1154747..1154752, 1154813..1154821,1154870..1154872) /locus_tag="Deba_1029" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1155223..1156053 /locus_tag="Deba_1030" /db_xref="GeneID:9493484" CDS 1155223..1156053 /locus_tag="Deba_1030" /note="InterPro IPR019809; KEGG: mtp:Mthe_1067 methyltransferase type 11; SPTR: A0B827 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806992.1" /db_xref="GI:302342463" /db_xref="GeneID:9493484" /translation="MDQHTQAVLDYSLAVLRGQAPHSFDHPLPASISSRSIEVPWVAE TLRGLGAKRHLDVGFSLSSLDSLGVLLANRRDNGVELQAVDIIEPQRVQTRYPAAWLA EIMSVPVRVGDIRAMSLEAGGHDLISLISTIEHIGFDKPAADQGRSAFDRAESEAEVV TQRAADVNRRVLDNLRGALAAGGHLLLTVPMGKGGPVVLRDSLGFFCVQWEYEAASWA EIVEHPGFELVESHYFILGDDLVWRAVNGPAGLARAEARHLSHSTGCALALLRKKAGA " gene 1156070..1156591 /locus_tag="Deba_1031" /db_xref="GeneID:9493485" CDS 1156070..1156591 /locus_tag="Deba_1031" /note="COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR011004:IPR001451:IPR018357; KEGG: ade:Adeh_4281 acetyltransferase; SPTR: Q2IHI8 acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats)" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_003806993.1" /db_xref="GI:302342464" /db_xref="GeneID:9493485" /translation="MTPRGEYRFAIHNSLVRLRKRVLSAYYRYLLGGFGPGSQVLGCI VAYGPRHIRVGARCTINKGVILNGHGGIRIADHVTLSPRVIISTAALDMKGGQPPYRH SFAPVTIGRGAWIASGAQLMPGVTIGDGALVAAGAVVTKDVPPRAVVGGVPARLLGWV DDDDATGRDGAES" misc_feature 1156220..1156495 /locus_tag="Deba_1031" /note="Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-...; Region: LbH_MAT_like; cd04647" /db_xref="CDD:100053" misc_feature order(1156238..1156240,1156244..1156246,1156268..1156270, 1156298..1156300,1156304..1156306,1156322..1156324, 1156340..1156348,1156403..1156405,1156409..1156411, 1156418..1156420,1156475..1156477) /locus_tag="Deba_1031" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100053" misc_feature order(1156244..1156246,1156250..1156252,1156340..1156342, 1156346..1156348,1156409..1156411,1156415..1156420, 1156433..1156435,1156469..1156474,1156487..1156492) /locus_tag="Deba_1031" /note="active site" /db_xref="CDD:100053" misc_feature order(1156244..1156246,1156250..1156252,1156340..1156342) /locus_tag="Deba_1031" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100053" misc_feature order(1156340..1156342,1156346..1156348,1156409..1156411, 1156415..1156420,1156433..1156435,1156463..1156465, 1156469..1156474,1156487..1156492) /locus_tag="Deba_1031" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100053" gene 1156623..1157867 /locus_tag="Deba_1032" /db_xref="GeneID:9493486" CDS 1156623..1157867 /locus_tag="Deba_1032" /note="InterPro IPR007197; KEGG: cbh:CLC_2585 hypothetical protein; PFAM: radical SAM domain protein; SPTR: A7FQ13 Putative uncharacterized protein; PFAM: radical SAM superfamily" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003806994.1" /db_xref="GI:302342465" /db_xref="GeneID:9493486" /translation="MYNHVVLDISGKCNARCTWCVTGYRNRQGVAYGRYMTPQDVAKV IDYLREQRIITPDAYFFLYNWGEPLINPHFAEIVEELNRREVTYIISTNASRVVEFAG ADDLRNLRAIVFSMCGFSQASYERVHGFNFEKIKNNIQRIMANYRAHGFAGKAEIRYH VYQFNLDEIPGVLAFAKENHLGLSPTYAGIPDLKRLMAYFADDMEPGQLKDVSRDLIF HYVDEVAARMPADYRCPYHDALLIDDDFQVLTCCLVTPEMENYSIGNLFDLDLERMRE LKVSQPICAECYRLAAPYLVNNRPYPKLVDELDLRLDSYDPARPLYVWGAKRMGVEAA ARLRAMGLEPAGFIEDDDDAPAVAIDPAALHGVGVLEAGGARPFVVVASEYMHPKIQA LQRMGYRPRQDYEVTAVVKRDY" misc_feature 1156641..1157159 /locus_tag="Deba_1032" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(1156659..1156661,1156665..1156667,1156671..1156673, 1156677..1156682,1156692..1156694,1156812..1156814, 1156818..1156823,1156893..1156901,1156965..1156967, 1157100..1157102) /locus_tag="Deba_1032" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene 1157917..1158804 /locus_tag="Deba_1033" /db_xref="GeneID:9493487" CDS 1157917..1158804 /locus_tag="Deba_1033" /note="COGs: COG1215 glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: tro:trd_1593 dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q2BI24 Teichoic acid biosynthesis protein; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003806995.1" /db_xref="GI:302342466" /db_xref="GeneID:9493487" /translation="MTHNANTPNRDDVAWFLERLTVYICTFNEHDNIGPCVAAVRANG CRRVVVVDASPDERTAQAARAAGAEVLRAAKGLASQRQRAVDHCQSEFLLFVDADDRL ATDCAATLWEDMRANGYAAVQARLGVWRPQSYWQKAADALWRLCLFTPGPTNMVGRPA LYRREALARAGLDISFDGVGNEDAALSIRLERLGYGQGVGRGLSLRRQPASFAENLAA WRKYGRGDAQLIRRYPAKRAAVLSHLLVNYPLRRSWRLARRGAGRYAGYCLAMGLFRF FFMAVALTPGLSAKAKEKK" misc_feature 1157971..>1158321 /locus_tag="Deba_1033" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature order(1157989..1157991,1157995..1157997,1158067..1158069, 1158205..1158207,1158211..1158213) /locus_tag="Deba_1033" /note="active site" /db_xref="CDD:132997" gene 1158801..1160471 /locus_tag="Deba_1034" /db_xref="GeneID:9493488" CDS 1158801..1160471 /locus_tag="Deba_1034" /note="COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158:IPR007197:IPR013785:IPR006638; KEGG: dol:Dole_1742 radical SAM domain-containing protein; PFAM: radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A9A0S1 radical SAM domain protein; PFAM: radical SAM superfamily; B12 binding domain" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003806996.1" /db_xref="GI:302342467" /db_xref="GeneID:9493488" /translation="MKIERVLLLNPPDPSLWADGRSGYSYFEPPLGLMYVFDYLRKNT SLTVKLVDLSIEMRFEGKSSLPALLDDLLADFRPDMVAIATLYYNSLHIFHALAGMIK QRAPQAVVVMGGHYPTHMTRECLADVNVDYAVLSEGELGLGGLIEALNAGRDPAQVEG LAFTRDGVLTRNARRNFWKGFAEAGRLSWEQVRFDHYFKDSRNVLHRVREAGELRIAA ITASRGCPYHCAFCSSQNMWRGHWRRRRVALVIDEIRFLMDRHGVNTIVFNDENISVN RAWFLELLGELAKLGVTWISGGGLSVRSLDDPRVVDEMYRSGVGLFNLAFESTSDRTL RRIGKALTTEESARVIELVRQRGDGYVTGFFISGFPFETMADVRDNLDRAGALDIDWK CYYCFQPFPGAPLYEQCLQEGLIEAFDANYGENFHAPQLKHIDYTPQELFDENYRANL RFNFLANRNLALGSPAALEQARRDFTYVLDMAPTHVFAWLGLATIAQRQRRPDLAGQY LAKARHGLANDSFDWANYLQGFGMSLDAPADGPGGGWADHFVAAQGHA" misc_feature 1158885..1159298 /locus_tag="Deba_1034" /note="B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the...; Region: radical_SAM_B12_BD; cd02068" /db_xref="CDD:30206" misc_feature 1159443..1160060 /locus_tag="Deba_1034" /note="Radical SAM; Region: Elp3; smart00729" /db_xref="CDD:128968" misc_feature 1159455..1159952 /locus_tag="Deba_1034" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" gene 1160464..1161627 /locus_tag="Deba_1035" /db_xref="GeneID:9493489" CDS 1160464..1161627 /locus_tag="Deba_1035" /note="KEGG: sit:TM1040_1022 L-glutamine synthetase; SPTR: C9D3W7 Glutamine synthetase, type I" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003806997.1" /db_xref="GI:302342468" /db_xref="GeneID:9493489" /translation="MHSQQARLAGQYLFVNPVAPADKPPERHAARLGDQWYFSSGGRL FCIAATELARSEASLGPAREVPLPAGRVRGLISFKGCLGVALQAPDQGRTRLFCRRSA DAQWRPGPEFVGEPSQFCRGPGDRAAFFAVNPDDKDQPEPRPIYYSTDGMNWVVFDYI HATEAQHVHSLGLLQDDLVLLVGDLHFRHLRIRAFDQGGQVIDDPLGRHRRYLGLAEH SLYHMLPGPDGRPLFALDGPTILLDAAGQVAFKDQSPMASGFQVAAHGCFAARPDALI FGVWRRSAQSPFPCLYVATPSRFYKYVNQSRPFAEGLAWTGYQFNDATPRNLGGVGDH CFWPCYGCESAYFALLDQAEAEQLLRNQGGRLTVVPGDQRRATFTLPALLPLD" gene complement(1161747..1161823) /locus_tag="Deba_R0021" /db_xref="GeneID:9493490" tRNA complement(1161747..1161823) /locus_tag="Deba_R0021" /product="tRNA-Arg" /db_xref="GeneID:9493490" gene 1162035..1162727 /locus_tag="Deba_1036" /db_xref="GeneID:9493491" CDS 1162035..1162727 /locus_tag="Deba_1036" /note="COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: amc:MADE_02638 enoyl-CoA hydratase/carnithine racemase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: B4RTC8 enoyl-CoA hydratase/carnithine racemase; PFAM: enoyl-CoA hydratase/isomerase family" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_003806998.1" /db_xref="GI:302342469" /db_xref="GeneID:9493491" /translation="MSKVTFSMEDQVAVVSMDDGKANAFDFEMFAELNQAMDQAEAAK AKLVVFQGREGLFCGGLNLKLLPTLPPEKILEMVNQFGQTMCRVFLLPIPTVAAIAGH SIAGGMQLAFACDRRVVKDGPIRLQMNEMLTGMVLPSWMLRICKSVIPTQWQAEVLLH ARTYSPAEALAKNIIHAVAPADQDIVAAAKQACQDLLALEPGAYSYTKRLMHGPGLAE DLAKLPAEMARK" misc_feature 1162044..1162622 /locus_tag="Deba_1036" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1162098..1162100,1162104..1162106,1162197..1162199, 1162209..1162223,1162338..1162340,1162344..1162352, 1162419..1162424,1162431..1162433) /locus_tag="Deba_1036" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1162215..1162217,1162350..1162352) /locus_tag="Deba_1036" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1162290..1162292,1162314..1162316,1162377..1162388, 1162425..1162436,1162452..1162454,1162458..1162466, 1162470..1162475,1162488..1162493,1162497..1162502, 1162506..1162511,1162518..1162520,1162551..1162553, 1162560..1162562,1162608..1162610,1162617..1162622) /locus_tag="Deba_1036" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(1162864..1163715) /locus_tag="Deba_1037" /db_xref="GeneID:9493492" CDS complement(1162864..1163715) /locus_tag="Deba_1037" /EC_number="1.2.7.3" /note="COGs: COG1013 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit beta; InterPro IPR011766:IPR011896; KEGG: drt:Dret_0516 pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: C8X0I8 pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; PFAM: pyruvate ferredoxin oxidoreductase subunit beta C terminal; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, subunit beta, pyruvate/2-ketoisovalerate family" /codon_start=1 /transl_table=11 /product="pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta" /protein_id="YP_003806999.1" /db_xref="GI:302342470" /db_xref="GeneID:9493492" /translation="MATIEDFGQFETAWCPGCGNHSILKALKKALAHSGLEPQDILMV SGIGQAAKTPHYLLCNAFNGLHGRSLPAASGAKLANPRLKVIVESGDGCHYGEGGNHF LAALRCNLDITIIVHDNQVYGLTKGQASPTSMEGFKTKAQPDGVWSHPFNPLAVAISL HAGFVARGFSGEIDHLAELIQQGLAHRGLALIDVLQPCVSFNKVNTFKWYKDRAYKLG PEHDPTDWARAMQLSFEFGQRIPIGLLYKNDRPAFDDHFDVLRNGPLADQPVDKAALR EVMMSFA" misc_feature complement(1162879..1163715) /locus_tag="Deba_1037" /note="2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated; Region: PRK05778" /db_xref="CDD:180253" misc_feature complement(1163113..1163676) /locus_tag="Deba_1037" /note="Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR...; Region: TPP_OGFOR; cd03375" /db_xref="CDD:73355" misc_feature complement(order(1163353..1163355,1163359..1163361, 1163437..1163448,1163518..1163520)) /locus_tag="Deba_1037" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:73355" misc_feature complement(1162921..1163124) /locus_tag="Deba_1037" /note="Pyruvate ferredoxin oxidoreductase beta subunit C terminal; Region: PFO_beta_C; pfam12367" /db_xref="CDD:152802" gene complement(1163737..1165419) /locus_tag="Deba_1038" /db_xref="GeneID:9493493" CDS complement(1163737..1165419) /locus_tag="Deba_1038" /note="COGs: COG0674 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit alpha; InterPro IPR002869:IPR009014:IPR019752:IPR002880; KEGG: dvm:DvMF_0184 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate/ketoisovalerate oxidoreductase; SPTR: B8DNT7 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: domain; pyruvate ferredoxin/flavodoxin oxidoreductase" /codon_start=1 /transl_table=11 /product="pyruvate flavodoxin/ferredoxin oxidoreductase domain protein" /protein_id="YP_003807000.1" /db_xref="GI:302342471" /db_xref="GeneID:9493493" /translation="MARSELTIMIGGEAGQGLVTIGQVLATTLTRAGYHIVVGQSYMS RIRGGHNTYSIRAAVGPIAAQREGVDILVALDQNTLSVHEAELRPGALVLADTGLSCG LSQCLSIPYKELAAARYENTVALGVAASLMGLDKAVVHEQLAHSLKKQPDEVIAANAQ ALDAAWDWAQTNHPAFDGLAPTQAQAERLLMGGNDAIALGAMSAGVKFCAFYPMTPAT SIALNLAAHAKKMGLVVEQAEDEIAAINMAIGASFAGAPAIVSTSGGGFALMGEGVSL AGMTETPLVIAVIQRPGPATGLPTRTEQADLELTLYAGHGEFPRAILAPGSVEECFHL TRKAFFLAEQSQGPVFILGDQYLADSLRAVEPFALDGLEPVRAGLRQPGLGRAYQRYA IDASGVSPRALPGFGPELVVADSDEHTADGHITEDLAVRVQMAEKRMRKLAILAEAVI APSFEGPAEAELLLACWGSAKGPVREAAQELRQAGRSVATCHFSQVWPLVGDKFLERF RQAGRVVMVEGNLTGQLAGLIRRETGFEVGRIVPRYDGLPLTPEYILRELQA" misc_feature complement(1163746..1165407) /locus_tag="Deba_1038" /note="2-oxoacid:acceptor oxidoreductase, alpha subunit; Region: OAFO_sf; TIGR03710" /db_xref="CDD:188378" misc_feature complement(1164958..1165380) /locus_tag="Deba_1038" /note="Pyruvate ferredoxin/flavodoxin oxidoreductase; Region: POR; cl00546" /db_xref="CDD:193862" misc_feature complement(1164355..1164843) /locus_tag="Deba_1038" /note="Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034" /db_xref="CDD:132917" misc_feature complement(order(1164484..1164489,1164538..1164543, 1164580..1164582,1164592..1164594,1164601..1164603, 1164652..1164654,1164658..1164660,1164667..1164675, 1164679..1164684,1164703..1164714,1164754..1164756, 1164763..1164765,1164775..1164777,1164793..1164798)) /locus_tag="Deba_1038" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132917" misc_feature complement(order(1164592..1164594,1164601..1164603, 1164652..1164654,1164658..1164660,1164667..1164675, 1164679..1164684,1164703..1164714,1164754..1164759, 1164775..1164777,1164781..1164786,1164793..1164798)) /locus_tag="Deba_1038" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132917" misc_feature complement(order(1164697..1164699,1164781..1164783)) /locus_tag="Deba_1038" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132917" misc_feature complement(order(1164547..1164549,1164775..1164777)) /locus_tag="Deba_1038" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:132917" gene 1165654..1166172 /locus_tag="Deba_1039" /db_xref="GeneID:9493494" CDS 1165654..1166172 /locus_tag="Deba_1039" /note="COGs: COG0693 Putative intracellular protease/amidase; InterPro IPR002818:IPR006286; KEGG: dba:Dbac_2033 intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; SPTR: Q1NLN4 peptidase C56, PfpI; TIGRFAM: intracellular protease, PfpI family; PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease, PfpI family" /codon_start=1 /transl_table=11 /product="intracellular protease, PfpI family" /protein_id="YP_003807001.1" /db_xref="GI:302342472" /db_xref="GeneID:9493494" /translation="MELKGKSVAILAADLYNEYELIYPYYRLLEAGARVLVVGAGDAK SYKSKVGLPVSVDAAVGDISADDFDGVVIPGGFAPDFMRRTPAMVEFVRQMHLGGKVV AAICHAGWMLASAEILQGRTVTSFFAIKPDMVHAGANWIDEECVVDGKLITARTPADL PAFMRAVVAALK" misc_feature 1165675..1166163 /locus_tag="Deba_1039" /note="A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus; Region: GATase1_PfpI_like; cd03134" /db_xref="CDD:153228" misc_feature 1165969..1165974 /locus_tag="Deba_1039" /note="proposed catalytic triad [active]" /db_xref="CDD:153228" misc_feature 1165969..1165971 /locus_tag="Deba_1039" /note="conserved cys residue [active]" /db_xref="CDD:153228" gene 1166202..1166660 /locus_tag="Deba_1040" /db_xref="GeneID:9493495" CDS 1166202..1166660 /locus_tag="Deba_1040" /note="COGs: COG2105 conserved hypothetical protein; InterPro IPR009288:IPR013024; KEGG: ent:Ent638_0400 hypothetical protein; PFAM: AIG2 family protein; SPTR: A3UE45 Putative uncharacterized protein; PFAM: AIG2-like family" /codon_start=1 /transl_table=11 /product="AIG2 family protein" /protein_id="YP_003807002.1" /db_xref="GI:302342473" /db_xref="GeneID:9493495" /translation="MPDTDDCRHIVFYGSLMADFPTQDHVGVRAMVALVRPCLVWGRL YDLGSYPGLAPGQRRVAAELYRLVDPAALALLDRFEDYDPLNPGGSEYLRQCASLADG SEQAWVYYFNRPTEGLRLIEGDSWAAHLGRRRADQGFWRDFLGQRPDPVG" misc_feature 1166235..1166528 /locus_tag="Deba_1040" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cd06661" /db_xref="CDD:119400" misc_feature order(1166238..1166240,1166244..1166249,1166436..1166441, 1166475..1166477) /locus_tag="Deba_1040" /note="putative active site pocket [active]" /db_xref="CDD:119400" misc_feature order(1166361..1166366,1166475..1166489,1166493..1166495, 1166520..1166522) /locus_tag="Deba_1040" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119400" misc_feature 1166439..1166441 /locus_tag="Deba_1040" /note="putative catalytic residue [active]" /db_xref="CDD:119400" gene 1166720..1167640 /locus_tag="Deba_1041" /db_xref="GeneID:9493496" CDS 1166720..1167640 /locus_tag="Deba_1041" /note="COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; InterPro IPR003358; KEGG: svi:Svir_39160 tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; SPTR: C7MS02 tRNA (Guanine-N(7)-)-methyltransferase; PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_003807003.1" /db_xref="GI:302342474" /db_xref="GeneID:9493496" /translation="MKKRYLSMKQFVSWRETPWPVDWPAIFGRRAPLVLEIGCGNGEM LARRAAATPQVDFVAVDLQWPSVLRALRRVNQAGLDNARLTKGGADMVLTRLFAPGQL SHVYCLFPCPWPKRRHQVKRLFDSQFLCLMNSRMAPQADFRLVTDWRPFAQWVGEQAL EAAFRPSLRLIGPEHDTKYERRWAQGGQSEFFELTLTKAEHLVLPPYEEPVLRTPLLA RFDPARLAPFEDRGQAIASCREVFYDSLRDVAMLRMVTAEDDFSQNFYVQVLRRPEGD WQVRVAPGCGVLPTVAVQEALDAVAARLAD" misc_feature 1166762..1167268 /locus_tag="Deba_1041" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1167652..1168695) /locus_tag="Deba_1042" /db_xref="GeneID:9493497" CDS complement(1167652..1168695) /locus_tag="Deba_1042" /note="COGs: COG0585 conserved hypothetical protein; InterPro IPR020103:IPR001656:IPR020119:IPR011760; KEGG: acp:A2cp1_3784 tRNA pseudouridine synthase D TruD; PFAM: tRNA pseudouridine synthase D TruD; SPTR: B8J7C8 tRNA pseudouridine synthase D; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: conserved hypothetical protein TIGR00094" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase D TruD" /protein_id="YP_003807004.1" /db_xref="GI:302342475" /db_xref="GeneID:9493497" /translation="MPRALPYVTADLPGVGGELKAEPSHFVVEELPLYAPDGQGEHIY VNLTRQGLTTKDVCRALAKALGLSEDAIGVAGQKDKHAITTQTFSAHLPDMPEETARQ LIEANLSARVNWTSRHHNKLKLGHLLGNRFRILLSRPDDGAQEKAAAVAQALARRGLP NFFGPQRFGLDGDNAAKGRQAVLGHGPRDKWLRKLLCSAYQSQLFNTWLSRRMADGLF DRLLIGDVAKKTDTGGIFNVEDPDAEQPRLDDGRITYTGPIYGGKMLWAKDEAGQRER QILAEEDIGEADFKRARLSGSRRPARLVLDELRVEPTDQGLAFDFALPKGSYATVVLR EFMKSEPHAPQAD" misc_feature complement(1167688..1168689) /locus_tag="Deba_1042" /note="tRNA pseudouridine synthase D (TruD); Region: TruD; pfam01142" /db_xref="CDD:144656" misc_feature complement(1167922..1168647) /locus_tag="Deba_1042" /note="PseudoU_synth_EcTruD: Pseudouridine synthase, TruD family. This group consists of bacterial pseudouridine synthases similar to Escherichia coli TruD. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...; Region: PseudoU_synth_EcTruD; cd02575" /db_xref="CDD:73315" misc_feature complement(1168600..1168620) /locus_tag="Deba_1042" /note="Permutation of conserved domain; other site" /db_xref="CDD:73315" misc_feature complement(1168459..1168470) /locus_tag="Deba_1042" /note="active site" /db_xref="CDD:73315" misc_feature complement(1167685..>1168149) /locus_tag="Deba_1042" /note="PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of...; Region: PseudoU_synth; cl00130" /db_xref="CDD:193668" gene 1168827..1169039 /locus_tag="Deba_1043" /db_xref="GeneID:9493498" CDS 1168827..1169039 /locus_tag="Deba_1043" /note="KEGG: fal:FRAAL0040 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807005.1" /db_xref="GI:302342476" /db_xref="GeneID:9493498" /translation="MIANHCHCNHPSGSTGEARDLAACCLPTHDPAERTVWELGPEFR PGRKARLVAVDGGPSEKRPVSVEVRA" gene complement(1169036..1169767) /locus_tag="Deba_1044" /db_xref="GeneID:9493499" CDS complement(1169036..1169767) /locus_tag="Deba_1044" /note="COGs: COG1489 DNA-binding protein stimulates sugar fermentation; InterPro IPR005224:IPR000595; KEGG: gsu:GSU2716 sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; SPTR: P61664 Sugar fermentation stimulation protein homolog; TIGRFAM: sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein" /codon_start=1 /transl_table=11 /product="cyclic nucleotide-binding protein" /protein_id="YP_003807006.1" /db_xref="GI:302342477" /db_xref="GeneID:9493499" /translation="MSEAGLEGARHVFDPPLIAGRLVRRYKRFLAEVTLADGQVVTAH CPNSGSMLGCDPPGAPVRLSPAANPQRRTKYGWEMVLIDDGWVGINTALPNELVAQAA RLRALPLFADALEARREVKVSAHARLDLLVRTSQGPLWVEVKNVTLKHGPAAAFPDAR TERGAKHLRELARLKAQGDRAALVFVVQRGDVEFFAPARAIDPDYAAELGRAVAAGVE VVVVQARVEPRAVALWRQLPARLDR" misc_feature complement(1169153..1169731) /locus_tag="Deba_1044" /note="Sugar fermentation stimulation protein; Region: SfsA; cl00647" /db_xref="CDD:186125" gene complement(1169764..1171356) /locus_tag="Deba_1045" /db_xref="GeneID:9493500" CDS complement(1169764..1171356) /locus_tag="Deba_1045" /note="COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158:IPR007197:IPR013785:IPR006638; KEGG: dol:Dole_3058 radical SAM domain-containing protein; PFAM: radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A8ZZI9 radical SAM domain protein; PFAM: radical SAM superfamily; B12 binding domain" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003807007.1" /db_xref="GI:302342478" /db_xref="GeneID:9493500" /translation="MRVTLINPYYPISETPSPPLGLAFLAGALERAGHEVQMLDYVVY PYSKQALQGAMERFQPRMIGVTAVSMTFPDAAQVMADAKAIDPEVVTVLGGPHATFRA EPTLLETPQVDVVVVGEGELTIVELTRAIETGADLAQVAGLVVRGPHGPLRTAARPHI ADVDTLPIPARRHIPLGRYRAIGMPISMTTSRGCPFQCIFCVGRKMVGSKVRYHSTKR VVDEFESLTKLGFHQINIADDLFTANKKHCIPICEEIIARGIDYKWTSFARVDTVSPE VLRAMKKAGCTAVSFGVETGNPEIMKRIKKGISLDQVTKAVAMTAEAGLLPHASFILG LPGETPQTLRQTQEFADSLAELGCLYGFHLLAPFPGTEVLERIDEYGLTLLTDNWADY HANRAIVQTAQAPREMLDEVVIRYDKEYVAALGEMKRKLQAGQASQDEAAQVLGLDRI CATHDIMMGRMLETDGFVATGDLAADNADGLATLAKRFAARLKFSEAEVQDALEHNLR HQTIQRADEPGGVRWRWISYAA" misc_feature complement(1170919..>1171194) /locus_tag="Deba_1045" /note="B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the...; Region: radical_SAM_B12_BD; cd02068" /db_xref="CDD:30206" misc_feature complement(1170217..1170801) /locus_tag="Deba_1045" /note="Radical SAM; Region: Elp3; smart00729" /db_xref="CDD:128968" misc_feature complement(1170241..1170789) /locus_tag="Deba_1045" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(1170262..1170264,1170361..1170363, 1170481..1170483,1170541..1170546,1170643..1170648, 1170751..1170759,1170763..1170765,1170769..1170771, 1170775..1170777)) /locus_tag="Deba_1045" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene 1171542..1172186 /locus_tag="Deba_1046" /db_xref="GeneID:9493501" CDS 1171542..1172186 /locus_tag="Deba_1046" /note="KEGG: dol:Dole_2587 hypothetical protein; SPTR: A8ZWQ9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807008.1" /db_xref="GI:302342479" /db_xref="GeneID:9493501" /translation="MTFDPGIISGVRGFMDDDEAKRLHLIAIEASKLGPCLEVGSYCG KSTICLGLACRQNGGVLFALDHHRGNEEQQPGQEYFDPETFDQRSGRIDTFGEFRANI EAAGLTDTVAPLVCPSAVAARQWATPLGLVFIDGGHSLEAAYRDYINWSRHLRPGGYL LFHDIFENPAEGGQAPYLVYQMAMASRQFEELERTKSLRVLRRLPCEATPPIGL" misc_feature 1171584..1172156 /locus_tag="Deba_1046" /note="Predicted O-methyltransferase [General function prediction only]; Region: COG4122" /db_xref="CDD:33879" gene complement(1172183..1173208) /locus_tag="Deba_1047" /db_xref="GeneID:9493502" CDS complement(1172183..1173208) /locus_tag="Deba_1047" /note="InterPro IPR008930:IPR001300; KEGG: dal:Dalk_2453 hypothetical protein; SPTR: B8FB60 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807009.1" /db_xref="GI:302342480" /db_xref="GeneID:9493502" /translation="MNKLAAATSYQPAEIDVAQTTSYILAVQRPWGEIPWSEGGFTDP WDHVESAMGLAVGGQLQAAQKAYEWLAESQMQDGSWWSQYRDGRRDEGSFKDTNMVTY IAVGVLHQFLCTGDLGFVRRMWPTVEKAMEFAMTMREPHGAFYWAKRPDGSIDQSILL TGCSSIHKSLAAAISLAGLLGLSRPQWGEAMEALARAIKKRPMVFDQSKARFSMDWYY PVLCGVITGAEAQRRLEQGWETYVMKGWGARCVSDRPWVTMAETSELVMALAAMGSYL EAETILRWIQDNKYDDGAYWTGLALPERVIYTQEKTTWTGAAVLLAADMLYELSPACR LFCHQPA" misc_feature complement(<1172777..1173199) /locus_tag="Deba_1047" /note="This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate...; Region: ISOPREN_C2_like; cl08267" /db_xref="CDD:126391" gene complement(1173205..1173909) /locus_tag="Deba_1048" /db_xref="GeneID:9493503" CDS complement(1173205..1173909) /locus_tag="Deba_1048" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dol:Dole_2593 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A8ZWR5 methyltransferase type 11; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003807010.1" /db_xref="GI:302342481" /db_xref="GeneID:9493503" /translation="MNTVDFSLVKPAPDDKVLDVGCGSGRHTCAAAMHENVCSVGLDL CFDDVRQADQRLEQNRAWIKGRCGTLVADITNLPFPDNHFDLVICSEVLEHVPAHEHA LKELVRVLKPGKNLVVSVPSWFPERICWALSKDYHQCAGGHVRIYRKDQLLAMIAAAG ASKWRVGRAHGLHAPYWWLKCLVGPDNDSSRLVKLYHRLLVWDMMKKPALTRFLERAL NPIIGKSTVIYSVKNK" misc_feature complement(1173541..1173864) /locus_tag="Deba_1048" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1173640..1173642,1173688..1173696, 1173778..1173783,1173832..1173852)) /locus_tag="Deba_1048" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1173866..1175143) /locus_tag="Deba_1049" /db_xref="GeneID:9493504" CDS complement(1173866..1175143) /locus_tag="Deba_1049" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: dal:Dalk_3322 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: B8FJ84 glycosyl transferase group 1; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003807011.1" /db_xref="GI:302342482" /db_xref="GeneID:9493504" /translation="MGSDLDRPLRICLLSYRSNPHSGGQGVYIKYLSKALKDLGHHVE VVAGPPGPHLDDGVALHSIPCLDLYNPEDPFRTPRIGELYDPINYIEWIGTTTMGFPE PYTFGLRALKYIKARRRDFDVIHDNQCLSHGIWRMNRYAPTTITIHHPITVDRRIAVQ SVRSPWKKLKNMRWYSFVGMQKRVARKFSNIITVSEFAADDIAREFGVDRRKFRVAPN GIDVEHFRPLEGVQRRPRRLIVTNSADTPLKGLYYLLHAVHRVAQSAPVELTVVGKPK EKGVVERLVRELDLGRIVTFTGRIDDDEFLRQYAMASVAVAPSLYEGFGLPAGEAMAC GLPVISTTGGALPEVVGDAGVLVPPADAEALAAAIVDLLDNPAKAAQLGRKGFERVHG QFTWRVAARKTVDAYKETIREHRRLQPGQTSAR" misc_feature complement(1173902..1175116) /locus_tag="Deba_1049" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature complement(1173920..1175116) /locus_tag="Deba_1049" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" gene complement(1175331..1176227) /locus_tag="Deba_1050" /db_xref="GeneID:9493505" CDS complement(1175331..1176227) /locus_tag="Deba_1050" /note="COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: rxy:Rxyl_3119 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q1ARF2 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003807012.1" /db_xref="GI:302342483" /db_xref="GeneID:9493505" /translation="MSAFDLDIIFVNYNSTDDLIACLRSLAENPCRARLRIFVQDNAS KDAPRRIAEAFPAVELQINKKNIGLGGAINQAVRRGDAPFIAMINPDSVIDGRCLDNC LQWLRDNPQAGAVGPKILNLDGTVQGSARAFPSALTGLFGRSSLLSRLFPNNRFTARN VLTQGCEFCQPTAVDWVSLAAIVARRQAFEEAGMMDEDFFLFWEDADLCKRLWASGWK VYYYPHDSIVHKVGGSRKSRNIASLWNFHKSSYIFYRKHSNGVGAIAAPFVISLLGIR FASLCMLHFIRLPFAGRSALRR" misc_feature complement(1175364..1176215) /locus_tag="Deba_1050" /note="Predicted glycosyltransferases [General function prediction only]; Region: COG1216" /db_xref="CDD:31409" misc_feature complement(<1175871..1176206) /locus_tag="Deba_1050" /note="Subfamily of Glycosyltransferase Family GT2 of unknown function; Region: GT_2_like_c; cd04186" /db_xref="CDD:133029" misc_feature complement(order(1175955..1175960,1176102..1176104)) /locus_tag="Deba_1050" /note="Probable Catalytic site [active]" /db_xref="CDD:133029" misc_feature complement(1175535..>1175699) /locus_tag="Deba_1050" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" gene complement(1176711..1178186) /locus_tag="Deba_1051" /db_xref="GeneID:9493506" CDS complement(1176711..1178186) /locus_tag="Deba_1051" /EC_number="5.3.3.3" /note="COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR009100:IPR004925:IPR006091:IPR013764; KEGG: chy:CHY_1730 4-hydroxyphenylacetate 3-hydroxylase family protein; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: vinylacetyl-CoA delta-isomerase; SPTR: Q3ABD4 4-hydroxyphenylacetate 3-hydroxylase family protein; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal" /codon_start=1 /transl_table=11 /product="vinylacetyl-CoA delta-isomerase" /protein_id="YP_003807013.1" /db_xref="GI:302342484" /db_xref="GeneID:9493506" /translation="MRTKQQYIDGLNKLKRNLYFGGDKVGRDHEALEQPINVIGVTFD AAQDPELAPLCTAKSHLTGETINRFCHVHQSTQDLHDKQDMTRTLCRKVGFCIGRCMG VDAINAVNAVSFEADKSNNGATEYHKNFINWLTNFQKNDLVGSCAQTDVKGHRLMRPA QQPDPDSYLHIVERRADGIVVRGCKVHITQAAVADEILVVPTRSLGPDEADYAVAFAV PADHEGVKQVLHPHFMRNRKQFKRGFDWGVVDSYVVFDDVFVPWERVFLAGEHQHGGL CALLFALFHRHSYSGCKPAIGDVLLGMAAMAAEINGIEKTSHVRGMLAEFVKVSELGY AAGFTASSLGSTQINIPGLGKAPYGPGGFFPDSVYANVGRCLTGEAVFHEQELLCDIA GGVPSTFPFEQELTNEEVKPFLEKYINRQSKVSVEDQIKFWLYFGDITCSNLNGSITY GSFHGGGSPIMEQIAIVSQYDIKARKDIVRNLAGMTTGGKK" misc_feature complement(1176732..1178186) /locus_tag="Deba_1051" /note="Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG2368" /db_xref="CDD:32515" misc_feature complement(<1177476..>1177670) /locus_tag="Deba_1051" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(1176732..1177373) /locus_tag="Deba_1051" /note="4-hydroxyphenylacetate 3-hydroxylase C terminal; Region: HpaB; pfam03241" /db_xref="CDD:146061" gene 1178523..1179188 /locus_tag="Deba_1052" /db_xref="GeneID:9493507" CDS 1178523..1179188 /locus_tag="Deba_1052" /note="InterPro IPR009057:IPR001647:IPR012287; KEGG: dat:HRM2_21370 HTH-type transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0QDH1 HTH-type transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003807014.1" /db_xref="GI:302342485" /db_xref="GeneID:9493507" /translation="MGGKTKKKQAKDTRANILHAARLAFARHSYNAASIRMIAAQGGF GHAIIGYYFPTKAELFAAVAADICAELYAASVQWMRRARRLPPAEGLAAYIRRLVDFG REKPWIFQIIMLNFAENRDAILPGQEHLLETIEKIRNDFVVAMGLELRRDEARRFTDS FNAMALYFLGSRESAAWLLGMNPAGGRYAQWVQDTMLALFLPAMGQLLERGGPPREQP AQK" misc_feature 1178523..1179143 /locus_tag="Deba_1052" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 1178571..1178711 /locus_tag="Deba_1052" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(1179238..1180354) /locus_tag="Deba_1053" /db_xref="GeneID:9493508" CDS complement(join(1179238..1180296,1180298..1180354)) /locus_tag="Deba_1053" /ribosomal_slippage /note="KEGG: ade:Adeh_0244 LigA; SPTR: P0C348 peptide chain release factor 2; manually curated; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2" /codon_start=1 /transl_table=11 /product="LigA" /protein_id="YP_003807015.1" /db_xref="GI:302342486" /db_xref="GeneID:9493508" /translation="MRQKLAELRQRLGVIQEYLDPESKTKRLAELDKIVGANDFWEDQ NAAKAVMRERTDLAQSLEELDALNRSMEDAEVLLELAVEEDDASLTAEIDQAHDALER QIGRLEAARLLGGPDDHRGAILAINAGAGGADAQDWAQMLTRLYGRYAERQGFQVVEL DFQAGDEAGVKSVTMEINGPRAYGLLKGESGVHRLVRISPFDASHRRHTAFASVYVSP QVDDDIEIEVKDADIRIDTYRASGAGGQHVNKTSSAVRITHFPTGVVVQCQNEKSQHR NKDMAMKVLRARLYELEIHKREAEKREVHASHQEIAWGSQIRSYVLAPYRLVKDHRTG VEVGNVDSVLDGQLDDFIQGYLLWRSGQGGAAKAGHD" misc_feature complement(join(1179268..1180296,1180298..1180354)) /locus_tag="Deba_1053" /note="peptide chain release factor 2; Validated; Region: prfB; PRK00578" /db_xref="CDD:179072" misc_feature complement(1179787..1180092) /locus_tag="Deba_1053" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" misc_feature complement(1179358..1179696) /locus_tag="Deba_1053" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" gene complement(1180359..1181954) /locus_tag="Deba_1054" /db_xref="GeneID:9493509" CDS complement(1180359..1181954) /locus_tag="Deba_1054" /note="COGs: COG0815 Apolipoprotein N-acyltransferase; InterPro IPR003010:IPR004563; KEGG: dol:Dole_1768 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: A9A0U7 Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="YP_003807016.1" /db_xref="GI:302342487" /db_xref="GeneID:9493509" /translation="MKFLAAWRPPFWAVGAAAIGGPLTALGFPPHDIWPLTLLGVALL ASFCWLLPARRAFAAAWLFGLGCAMGMVWWLTVAMTLHGGMSAPAAWAVLALCMAVLT SYPALAVGLAAYARQAGLSPLFCAPLAWVGGEWLRGVLLTGFPWLPLASGLTGRLELA QTAEWWGASGVSFLLVLTASLLARGLAPPLARRALPGRREWAALGAALALVAGGWLWG QARMTQVATQCAAAPKLVVGVVQPDVAIERLWRADERMAIIGAQAALSRQASAAVDGR RPWLVVWPESSTPFYFAHEDPGTSEVLDLARELDAFVMPAALGLARRQGKAMTSNRAW LVGPDGRIRGYYDKAHLVPFGEYVPLGEVLFWVRALAQIGGDQAAGRPGVLLEADGVK IGALICYESIFAYLGRAQRLAGATLLVNQTNDAWYGPSGASAQHMSHLVFRCIENRLA CARSANTGVSGFVLPDGRMAGLTDIFQPAWRVMALPLAGPETTFFTRHGDLVGPICAG AMPPLWAVAWLRRRRDKRRSENA" misc_feature complement(1180374..1181933) /locus_tag="Deba_1054" /note="apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302" /db_xref="CDD:178970" misc_feature complement(1180428..1181252) /locus_tag="Deba_1054" /note="Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571" /db_xref="CDD:143595" misc_feature complement(order(1180686..1180688,1180749..1180754, 1180758..1180763,1180887..1180889,1180899..1180901, 1180911..1180913,1181100..1181102)) /locus_tag="Deba_1054" /note="putative active site [active]" /db_xref="CDD:143595" misc_feature complement(order(1180761..1180763,1180911..1180913, 1181100..1181102)) /locus_tag="Deba_1054" /note="catalytic triad [active]" /db_xref="CDD:143595" misc_feature complement(order(1180437..1180451,1180578..1180583, 1180617..1180622,1180626..1180634,1180638..1180643, 1180728..1180733,1180740..1180754,1180758..1180760, 1180863..1180871,1180890..1180892,1180899..1180910)) /locus_tag="Deba_1054" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143595" gene complement(1181961..1182833) /locus_tag="Deba_1055" /db_xref="GeneID:9493510" CDS complement(1181961..1182833) /locus_tag="Deba_1055" /note="COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR005170; KEGG: gme:Gmet_2368 CBS:transporter-associated region; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; SPTR: Q39T31 CBS:Transporter-associated region; PFAM: CBS domain; Transporter associated domain" /codon_start=1 /transl_table=11 /product="CBS domain containing protein" /protein_id="YP_003807017.1" /db_xref="GI:302342488" /db_xref="GeneID:9493510" /translation="MDPDSRRSFIERLRGKLGLTRQSAPQQLEREIAGLVDQGEAQGF ISADEGEMIEAVLDLAETTAGQIMVPRIDIATVAESASVEEAIRVIIESGHSRIPLHG ADLDHIHGIVHAKDLLPFWGRPSEEVNLLRICRKPFFVPLSMSVNRLMAEFRKRRAHL AVVVDEYGGTAGIVTMEDVLEEIVGEIVDEYDQEQPMLEEQPDGALLLDARLEVEDLA DHLGVELPTELPEGRFETMGGLITTALGRVPKVGEEIVVGPLRMVIKEADERRVTKIM AALEQSPVAAASGD" misc_feature complement(1181985..1182827) /locus_tag="Deba_1055" /note="Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]; Region: CorC; COG4535" /db_xref="CDD:34182" misc_feature complement(1182288..1182575) /locus_tag="Deba_1055" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590" /db_xref="CDD:73090" misc_feature complement(1182009..1182239) /locus_tag="Deba_1055" /note="Transporter associated domain; Region: CorC_HlyC; pfam03471" /db_xref="CDD:190650" gene 1182953..1183120 /locus_tag="Deba_1056" /db_xref="GeneID:9493511" CDS 1182953..1183120 /locus_tag="Deba_1056" /note="KEGG: hypothetical protein; SPTR: A2DUQ4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807018.1" /db_xref="GI:302342489" /db_xref="GeneID:9493511" /translation="MPVQFDPNQVAPSQAPAEQPAPPPQETAPPPPQDPPPPEPAPVE PCGGSVVDEVV" gene complement(1183193..1183561) /locus_tag="Deba_1057" /db_xref="GeneID:9493512" CDS complement(1183193..1183561) /locus_tag="Deba_1057" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR001789; KEGG: sfu:Sfum_0187 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: A0LEN7 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807019.1" /db_xref="GI:302342490" /db_xref="GeneID:9493512" /translation="MAKILIVDDEEHIRFLYAEELTDEGYEVATADSGFEILERIERE KPDLIILDIKMVDYNGLDILQDIRNKFYDLPVILCTAYDTFKEDMKSIAADFYVIKSF DLTELKSKVKMALEASVPKA" misc_feature complement(1183226..1183552) /locus_tag="Deba_1057" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1183217..1183549) /locus_tag="Deba_1057" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1183259..1183264,1183271..1183273, 1183322..1183324,1183382..1183384,1183406..1183408, 1183535..1183540)) /locus_tag="Deba_1057" /note="active site" /db_xref="CDD:29071" misc_feature complement(1183406..1183408) /locus_tag="Deba_1057" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1183382..1183390,1183394..1183399)) /locus_tag="Deba_1057" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1183256..1183264) /locus_tag="Deba_1057" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(1183582..1184805) /locus_tag="Deba_1058" /db_xref="GeneID:9493513" CDS complement(1183582..1184805) /locus_tag="Deba_1058" /note="KEGG: sfu:Sfum_0186 glycosyl transferase family protein; SPTR: A0LEN6 glycosyl transferase, family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family protein" /protein_id="YP_003807020.1" /db_xref="GI:302342491" /db_xref="GeneID:9493513" /translation="MAEFVAEINPQNITEAEMVVAIPSYREAKLIGFPAEQAALGLQK FFSDKSCVLINCDNDSDDGTREAFMAADTGDVPKLYLSTPPGVRGKGNNFHNLFSKVL QLKAKAVVVVDADLKSITPQWIKHLGEPLFNNFGYVSPLYVRHKYDGTITNSIAYPLT RSLYGRRVRQPIGGDFGFSGELARIYLASPTWSEAVRNFGIDIWMTTVAMNSNTPICQ AFMGRPKIHKPKDPGSDLGPMFSQVVGTIFDLMQHSTGFWMRVKWSRPTSIYGFGLGE VELPPPVKVSAEKLLDNFRAGFARYADLWREVLSPDSMNKINEIAGLPDSRFDFPTQV WATLLYDFAIAHKNNAIDRQELLASLIPVYFGKTLSYVRKTERMTIQEAEEFIENECM VFEETKPYLLERWGA" gene 1185096..1186103 /locus_tag="Deba_1059" /db_xref="GeneID:9493514" CDS 1185096..1186103 /locus_tag="Deba_1059" /note="COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR016117:IPR005321; KEGG: vap:Vapar_3677 peptidase S58 DmpA; PFAM: peptidase S58 DmpA; SPTR: C5CU81 peptidase S58 DmpA; PFAM: peptidase family S58" /codon_start=1 /transl_table=11 /product="peptidase S58 DmpA" /protein_id="YP_003807021.1" /db_xref="GI:302342492" /db_xref="GeneID:9493514" /translation="MTNWPEIDRQGSPADVPGFLVGHAQDERGPTGCTVLLCPEGAVG GVAIGGWAAGTRGMDGLGPGHVVRAVQGVLFTGGSSFGLAASDGALRWLVEHGLGNQS GPYRLPSLPAAVIFDLGLTGGRVIPGPEMGRQACENASAGPMTRGNVGAGCGASIGKL FGPSRACKGGLGGASLRVGDLRLGALAVVNAFGDVIDQQGRIIAGARLAPDSASFVDA ARHFMAGGAYQPVAPPQNTTLVAIATNARLDKTAAGKVAAVAQGGLARCIDPVHSEVD GDLVCVLARGEVAVDLIGLGVMAGRLAQLAVWDAVLAARSLPGLPAAVDLPPAPRLWP A" misc_feature 1185135..1186037 /locus_tag="Deba_1059" /note="nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-; Region: nylC_like; cd02252" /db_xref="CDD:73148" misc_feature order(1185435..1185443,1185657..1185659,1185663..1185665, 1185804..1185806,1185921..1185926) /locus_tag="Deba_1059" /note="putative active site pocket [active]" /db_xref="CDD:73148" misc_feature 1185801..1185806 /locus_tag="Deba_1059" /note="cleavage site" /db_xref="CDD:73148" gene 1186379..1187209 /locus_tag="Deba_1060" /db_xref="GeneID:9493515" CDS 1186379..1187209 /locus_tag="Deba_1060" /note="COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR006059:IPR011862; KEGG: sat:SYN_00056 ABC-type phosphate transport system, periplasmic component; PFAM: extracellular solute-binding protein family 1; SPTR: Q2LTF4 ABC-type phosphate transport system, periplasmic component; TIGRFAM: phosphate binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate binding protein" /codon_start=1 /transl_table=11 /product="phosphate binding protein" /protein_id="YP_003807022.1" /db_xref="GI:302342493" /db_xref="GeneID:9493515" /translation="MRKKSLIKSVICLAAAGVMLLGGAALAADKISISGSTTVLPIAQ KAAEVYMKTNPGAAEISVSGTGSGDGLKALVEGSIDIADSSRAAKDKEIKRADEKGVK LVKHVVALDCIVPVVNPANKVTGLTKAQIKDIYTGAIKNWSEVGGDDGPIVVISRDSS SGTFEVWNELVLHKERVRPDAQLQASNGAVAQAVASNKYAIGYVGIGYLSKDLKGLTV DGVAASSDAARDKSYPVSRELYMYTNGEPTGAVKAFIDFVMGAEGQKIAGEEGFVPVR " misc_feature 1186469..1187203 /locus_tag="Deba_1060" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1187361..1188608 /locus_tag="Deba_1061" /db_xref="GeneID:9493516" CDS 1187361..1188608 /locus_tag="Deba_1061" /note="KEGG: ppf:Pput_1346 hypothetical protein; SPTR: Q88EC2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807023.1" /db_xref="GI:302342494" /db_xref="GeneID:9493516" /translation="MYKFTKMVGVAALALGLALSVGVANAATQAELEAKIKSLESTLN TLKTDLHQVQVKQAAPAEEVKLPGWVERMKFSGDLRLRWESTRFDDLNKKSKDGNDRL RTRLRFGVESQIHEDVEVGLRMATGSDSDGTSTNQTNGNYFGEFSSWGIDRAYVKYTP SFVPQKAIDLSVGKVKNPFLTSKVIWDEDVVPEGAFLKATLFKECKIQPWVLGTVMTV YQPGEADENIYAYAGQIGLNADFDAFKAEAGVSYTDWQDLGNPGYLPPAIHGNPTYTQ AGSTRMSQFKVWDFIAKASYKFSEQGAVNAWGHYVNNTDAEGPYSSADTAWGAGIGAK YAQFGADFWYKDVEGNATPGFISDSDSGYVNEKTWALGVSYQAWKYGLFKVTYFDGEN IDDKMQGATNDFQTLFIEAIFKF" gene 1188839..1189816 /locus_tag="Deba_1062" /db_xref="GeneID:9493517" CDS 1188839..1189816 /locus_tag="Deba_1062" /note="COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR000515:IPR011864; KEGG: sat:SYN_00057 ABC-type phosphate transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q2LTG2 ABC-type phosphate transport system, permease component; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC; phosphate ABC transporter, permease protein PstA" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter, inner membrane subunit PstC" /protein_id="YP_003807024.1" /db_xref="GI:302342495" /db_xref="GeneID:9493517" /translation="MTTVSQADSAVIDDGEAMELRTLPQASIASNGGPEREVWIRRVF IFCGLFSLLVMGLIVVFLFSEGAGVLGAVSLGDFLLGHYWYPTYEPPDLGILPLIVGS ASVTLVSSAIAVPLGVGAALYIGEVAGHRAREIIKPGVELLASLPSVVLGFVGMVIIA PELQRWLDVPSGLNILSASLMLAIMAIPTITSISEDALRAVPGDLREASLALGATRWE TLRKVQVPAALSGIGTGVILGMSRAMGETMVVLMVAGGAAQIPSSIFDSVRPMPATIA AEMGETPVGSAHYHALFAIAIVLFMMTLGFNLVAAWISKKYQQKGSSTL" misc_feature 1188956..1189792 /locus_tag="Deba_1062" /note="phosphate ABC transporter, permease protein PstC; Region: phosphate_pstC; TIGR02138" /db_xref="CDD:162724" misc_feature 1189133..1189630 /locus_tag="Deba_1062" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1189181..1189186,1189193..1189198,1189211..1189213, 1189244..1189255,1189259..1189288,1189295..1189300, 1189304..1189306,1189388..1189393,1189397..1189399, 1189403..1189405,1189412..1189417,1189421..1189423, 1189433..1189438,1189445..1189447,1189496..1189498, 1189538..1189543,1189550..1189552,1189571..1189582, 1189589..1189594) /locus_tag="Deba_1062" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1189262..1189306,1189571..1189588) /locus_tag="Deba_1062" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1189304..1189306,1189364..1189366,1189589..1189591, 1189625..1189627) /locus_tag="Deba_1062" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1189448..1189486,1189502..1189507,1189517..1189519) /locus_tag="Deba_1062" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1189813..1190685 /locus_tag="Deba_1063" /db_xref="GeneID:9493518" CDS 1189813..1190685 /locus_tag="Deba_1063" /note="COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR000515:IPR005672; KEGG: sat:SYN_00058 ABC-type phosphate transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q2LTG1 ABC-type phosphate transport system, permease component; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter, inner membrane subunit PstA" /protein_id="YP_003807025.1" /db_xref="GI:302342496" /db_xref="GeneID:9493518" /translation="MKGRISPAARKLRETVAFSLLRLSVLVVLGALGGIIIFLLIQGA GAISWEFLTEAPRDAMTKGGIFPAIVGTLYLTIGAIVVSLPLGVAAAIYLSEYARDGR LLQIVRLGIQNLAGVPSVVFGLFGLALFVGFFGMGISMLAGSLTLGLLVLPTVIGASE EALRQVPPTFREASLALGATRWETIYKVVLPAALPGILTGSILALGRAAGETAPIMFT AVTFYTLHLPTSPLHEVMALPYHVYVLATAGTHIEQTRPLQYGTVLVLIALVLGLSLV AVIIRTRMRKKRKW" misc_feature 1190017..>1190469 /locus_tag="Deba_1063" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1190065..1190070,1190077..1190082,1190095..1190097, 1190131..1190142,1190146..1190175,1190182..1190187, 1190191..1190193,1190257..1190262,1190266..1190268, 1190272..1190274,1190281..1190286,1190290..1190292, 1190302..1190307,1190314..1190316,1190365..1190367, 1190407..1190412,1190419..1190421,1190440..1190451, 1190458..1190463) /locus_tag="Deba_1063" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1190149..1190193,1190440..1190457) /locus_tag="Deba_1063" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1190191..1190193,1190242..1190244,1190458..1190460) /locus_tag="Deba_1063" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1190317..1190355,1190371..1190376,1190386..1190388) /locus_tag="Deba_1063" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1190679..1191446 /locus_tag="Deba_1064" /db_xref="GeneID:9493519" CDS 1190679..1191446 /locus_tag="Deba_1064" /EC_number="3.6.3.27" /note="COGs: COG1117 ABC-type phosphate transport system ATPase component; InterProIPR003439:IPR017871:IPR015850:IPR005670:IPR 003593; KEGG: pth:PTH_1677 ABC-type phosphate transport system, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A5D1M1 ABC-type phosphate transport system, ATPase component; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter, ATPase subunit" /protein_id="YP_003807026.1" /db_xref="GI:302342497" /db_xref="GeneID:9493519" /translation="MVNTQEIVIEVKDLNFYYGKSCALSEVSMDILRNQVTALIGPSG CGKSTFLRLFNRMNDLILGTRVEGKVLLDGQDIYGPDVDAVQLRRRVGMVFQKPNPFP KTIYENVAYGPRLIGVKNKTELDSLVERSLKAAALWDEVSDILQNSALALSGGQQQRL CIARALAVQPEVLLMDEPTSALDPIATARIEELVGQLRESYTVVIVTHNMQQAARVSD QTAFFYMGQLVEKGPTETIFTRPSQQRTEQYITGRFG" misc_feature 1190691..1191443 /locus_tag="Deba_1064" /note="phosphate transporter ATP-binding protein; Provisional; Region: PRK14236" /db_xref="CDD:184582" misc_feature 1190703..1191389 /locus_tag="Deba_1064" /note="Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein...; Region: ABC_PstB_phosphate_transporter; cd03260" /db_xref="CDD:73019" misc_feature 1190799..1190822 /locus_tag="Deba_1064" /note="Walker A/P-loop; other site" /db_xref="CDD:73019" misc_feature order(1190808..1190813,1190817..1190825,1190964..1190966, 1191204..1191209,1191300..1191302) /locus_tag="Deba_1064" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73019" misc_feature 1190955..1190966 /locus_tag="Deba_1064" /note="Q-loop/lid; other site" /db_xref="CDD:73019" misc_feature 1191132..1191161 /locus_tag="Deba_1064" /note="ABC transporter signature motif; other site" /db_xref="CDD:73019" misc_feature 1191192..1191209 /locus_tag="Deba_1064" /note="Walker B; other site" /db_xref="CDD:73019" misc_feature 1191216..1191227 /locus_tag="Deba_1064" /note="D-loop; other site" /db_xref="CDD:73019" misc_feature 1191288..1191308 /locus_tag="Deba_1064" /note="H-loop/switch region; other site" /db_xref="CDD:73019" gene 1191471..1192154 /locus_tag="Deba_1065" /db_xref="GeneID:9493520" CDS 1191471..1192154 /locus_tag="Deba_1065" /note="COGs: COG0704 phosphate uptake regulator; InterPro IPR008170; KEGG: aae:aq_906 transcriptional regulator (PhoU-like); PFAM: PhoU family protein; SPTR: O67053 phosphate transport system protein phoU homolog; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU" /codon_start=1 /transl_table=11 /product="phosphate uptake regulator, PhoU" /protein_id="YP_003807027.1" /db_xref="GI:302342498" /db_xref="GeneID:9493520" /translation="MSVTQFHRQMQQIKEDLVKMAGLVEEALLWSIEALSKRDSQLAQ RVISGDRRIDLLENAIDRSCLTLLATYQPVAVDLRFLASALKACSAVERMGDQAVNIA QRALVLCELHPSTVPGTIRTMAEIAREMGSQALDSFMREDLDLARKVIVRDDDLDTMY RVFLEEMIQWMTDEHRLIRRGVEYILASRHLERIGDEATNIAEEAFFLVEGRIVRHGG EDDVAVGPL" misc_feature 1191480..1192112 /locus_tag="Deba_1065" /note="phosphate transport system regulatory protein PhoU; Region: phoU_full; TIGR02135" /db_xref="CDD:162721" misc_feature 1191519..1191785 /locus_tag="Deba_1065" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" misc_feature 1191828..1192085 /locus_tag="Deba_1065" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" gene 1192198..1192881 /locus_tag="Deba_1066" /db_xref="GeneID:9493521" CDS 1192198..1192881 /locus_tag="Deba_1066" /note="COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867:IPR018480; KEGG: sfu:Sfum_0707 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: A0LG53 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_003807028.1" /db_xref="GI:302342499" /db_xref="GeneID:9493521" /translation="MNASTILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLAK EKKPALLVLDLMLPGLEGQEVCRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADD YLAKPFSPRELVLRVRAILRRQTGPEEQSAPLRKDALVIHPDRFEVRIDDEMVALTAT EFKLLHHLVANAGRVQTRQQLLEHVWGYEYDGYARTVDTHVRRLRKKIGPLSDDIETI RGIGYRYKE" misc_feature 1192204..1192872 /locus_tag="Deba_1066" /note="phosphate regulon transcriptional regulatory protein PhoB; Region: PhoB; TIGR02154" /db_xref="CDD:131209" misc_feature 1192216..1192560 /locus_tag="Deba_1066" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1192225..1192230,1192357..1192359,1192381..1192383, 1192447..1192449,1192504..1192506,1192513..1192518) /locus_tag="Deba_1066" /note="active site" /db_xref="CDD:29071" misc_feature 1192357..1192359 /locus_tag="Deba_1066" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1192366..1192371,1192375..1192383) /locus_tag="Deba_1066" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1192513..1192521 /locus_tag="Deba_1066" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1192597..1192872 /locus_tag="Deba_1066" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(1192669..1192671,1192726..1192731,1192783..1192785, 1192792..1192794,1192816..1192821,1192846..1192848, 1192861..1192863) /locus_tag="Deba_1066" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 1192884..1194659 /locus_tag="Deba_1067" /db_xref="GeneID:9493522" CDS 1192884..1194659 /locus_tag="Deba_1067" /note="COGs: COG5002 Signal transduction histidine kinase; InterProIPR004358:IPR003594:IPR009082:IPR003660:IPR 013656:IPR003661:IPR005467:IPR000014; KEGG: ppd:Ppro_3156 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; SPTR: A1ATS9 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_003807029.1" /db_xref="GI:302342500" /db_xref="GeneID:9493522" /translation="MAIRMTFQNRLLLGCLVVVVCTLIFVTVVLQRSLRGEMMRQVED EMKQRLVLLSEIVLDRYNPDDGLLGGDRLADALGGKLGARVTLISPAGLVLGDSDVPL AGLAKLDNHGMRPEVVEALEGGSGVSVRYSSTLDTDLMYAAKRLGDGTRPLMVVRLAL SLSSVKKTLSQLQRLIMGAVLLGALLSLGMAYMVARGFSRPLKKMTTVATAIAAGDLQ RRFRQYPGHEIGDLGRAFDRMADNMQARIDDITAARDRLEAMLRGMVEGVMVVDRDGR VMIANRALMTLLDLPSMPIGMQLSEFVRNPEVLDAIRQVRRGEGHVSTEFRTLSRAPR FLEAQVVRLPDSAPQAGAVAVFHDLTERKRLEEVRRDFVANVSHELRTPLTAIRGSSE TLLGGALENQHYAKHFVEMIARNASRLERLTQDLLDLAAMESGREELVKEAIDGASLA DSVLATVGELAEERGVELERELPKESLRIMASRRHLEQAVLNLLDNAIKYTESGGKVT LALTEAEGQTRISVKDSGAGIAPEHLGRIFERFYRADKDRSRQMGGTGLGLAIVKHIA QKHGGRVEVESTPGQGSTFTLVLPA" misc_feature <1193463..1193618 /locus_tag="Deba_1067" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 1193631..1194650 /locus_tag="Deba_1067" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature 1193646..1193834 /locus_tag="Deba_1067" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 1193979..1194173 /locus_tag="Deba_1067" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1193997..1193999,1194009..1194011,1194021..1194023, 1194030..1194032,1194042..1194044,1194051..1194053, 1194105..1194107,1194117..1194119,1194126..1194128, 1194138..1194140,1194147..1194149,1194159..1194161) /locus_tag="Deba_1067" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1194015..1194017 /locus_tag="Deba_1067" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1194339..1194650 /locus_tag="Deba_1067" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1194357..1194359,1194369..1194371,1194378..1194380, 1194447..1194449,1194453..1194455,1194459..1194461, 1194465..1194470,1194549..1194560,1194606..1194608, 1194612..1194614,1194627..1194632,1194636..1194638) /locus_tag="Deba_1067" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1194369..1194371 /locus_tag="Deba_1067" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1194459..1194461,1194465..1194467,1194549..1194551, 1194555..1194557) /locus_tag="Deba_1067" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(1194669..1195214) /locus_tag="Deba_1068" /db_xref="GeneID:9493523" CDS complement(1194669..1195214) /locus_tag="Deba_1068" /note="KEGG: aba:Acid345_0890 polysaccharide biosynthesis protein; SPTR: C0W543 Membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807030.1" /db_xref="GI:302342501" /db_xref="GeneID:9493523" /translation="MIDFQPRKPWTFFSLSLAVARAPRQRFAALAGQRSLAPPLAYLA VLWLLIAALSGLTALAGGPAVQWLALAWGPSWHGGLALCLWLSLRLIQHDAPLGRCLR IVFYGMWPWLLSAMAPLLPGLAAEAVVVLLAVLILGYIYAGLIAACDLSAPLAVACLI ICLVLMAIAAAVAGQAGARVW" gene 1195389..1196114 /locus_tag="Deba_1069" /db_xref="GeneID:9493524" CDS 1195389..1196114 /locus_tag="Deba_1069" /note="KEGG: bba:Bd2232 single-strand DNA-specific exonuclease; SPTR: C1MHE7 Predicted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807031.1" /db_xref="GI:302342502" /db_xref="GeneID:9493524" /translation="MIKVARVLLCAALFCLAGGGLVQASPHGWAELLDQWRRQALDDR QLIDRLHALASQPTPEQGPAQIEDMDYYSHELLLDENWEQWLIFQRSTLTIIPLASAR FYIYADAEVERLKRPGVRVIMERPKAAPKPADDEDLAQNRLKRMSKGLKDIGLAEDDP QAESMGWNVFRWFTDPDASSRGMEREFDWWQVGQKFVFVAALVLGCLIFVEVLRMVFG AGARAIGEGQRRRKRRLLRRSGR" gene 1196255..1197352 /locus_tag="Deba_1070" /db_xref="GeneID:9493525" CDS 1196255..1197352 /locus_tag="Deba_1070" /note="COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: gur:Gura_1715 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: A4BST9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine/tRNA-ribosyltransferase-iso merase" /protein_id="YP_003807032.1" /db_xref="GI:302342503" /db_xref="GeneID:9493525" /translation="MTPLPASPQSPQRLDPLADYDYDLPPELVAQKPAPRRVQARLMA LGRDGGPARHLRVAHLCKLLRPGDILVLNDTKVVPARLLVGKESGGRAEVFLLNPALP LERLVDGRERHQALVRAHRPVRPGQRLSLAGADGPWIFVLERGQRGQAVVELPSGALG LAQRFGQAPLPPYIRRPNGPSDDDVRRYQTVYAAKAGAVAAPTAGLHLSHELLAALQR RGVNIARLTLHVGYGTFAEPAPEDLARGRLHAEWVEIDEAACQAVATARAAGGRVIAV GTTSMRALEWLAGPGGAPRPRRGWCDILIQPGHRFRAADGLLTNFHLPRTTLLMLVAA LIGRERVLAAYAEAVRQRYRFYSFGDGMLIV" misc_feature 1196339..1197346 /locus_tag="Deba_1070" /note="Queuosine biosynthesis protein; Region: Queuosine_synth; cl00523" /db_xref="CDD:186057" misc_feature 1196342..1197346 /locus_tag="Deba_1070" /note="S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional; Region: queA; PRK00147" /db_xref="CDD:178900" gene 1197355..1198470 /locus_tag="Deba_1071" /db_xref="GeneID:9493526" CDS 1197355..1198470 /locus_tag="Deba_1071" /EC_number="2.4.2.29" /note="COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616:IPR004803; KEGG: geo:Geob_3451 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: B9M5N5 Queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; manually curated; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming" /codon_start=1 /transl_table=11 /product="queuine tRNA-ribosyltransferase" /protein_id="YP_003807033.1" /db_xref="GI:302342504" /db_xref="GeneID:9493526" /translation="MARLRYQQTARSGRARAGLLHTRRGAVRTPAFMPVGTQATVKTL MPEEVAQAGADMILANTYHLSLRPGAEEVAALGGLHRFMAWDGPILTDSGGFQVFSLA ANRKLDESGVSFRSHLDGSAMSLGPERAVQAQELLGSDVMMVLDECPPPGADRAYIAT ALARDARWAARALAARSEGGGALMGIVQGGVYHDLRRRSAELLLELELDGYALGGLSV GEPKEIMMEVIERTVPLVSGAGPVYLMGVGDPADLVRAVGLGVDMFDCVLPTRTARTG ALLTARGRMNIKNARYKDDPRPVEPDCQCPTCRRFSRAYLRHLYMAGELLAYRLNTLH NLHFVLGLMERLRQAIAQDRYEEFARGFLAELELGQQ" misc_feature 1197358..1198449 /locus_tag="Deba_1071" /note="Queuine tRNA-ribosyltransferase; Region: TGT; cl00409" /db_xref="CDD:193805" gene 1198503..1198880 /locus_tag="Deba_1072" /db_xref="GeneID:9493527" CDS 1198503..1198880 /locus_tag="Deba_1072" /note="COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: sfu:Sfum_1240 preprotein translocase, YajC subunit; PFAM: YajC family protein; SPTR: A0LHN0 Protein translocase subunit yajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit" /codon_start=1 /transl_table=11 /product="preprotein translocase, YajC subunit" /protein_id="YP_003807034.1" /db_xref="GI:302342505" /db_xref="GeneID:9493527" /translation="MLDLLFATNAMAQEAAGGAAPSGIAGMLTGPLPMLVLMFVVFYF LLIRPQQKKTKAHREMLGNLKAGDQIVTSGGIFGRITGLTDQTVVVEIAPQVRIKVQR GAVAGLAGGQPAPAEASAKGKKK" misc_feature <1198641..1198823 /locus_tag="Deba_1072" /note="Preprotein translocase subunit; Region: YajC; cl00806" /db_xref="CDD:193942" gene 1198965..1200590 /locus_tag="Deba_1073" /db_xref="GeneID:9493528" CDS 1198965..1200590 /locus_tag="Deba_1073" /note="COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791; KEGG: dol:Dole_2442 protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: A8ZW12 Protein-export membrane protein SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family" /codon_start=1 /transl_table=11 /product="protein-export membrane protein SecD" /protein_id="YP_003807035.1" /db_xref="GI:302342506" /db_xref="GeneID:9493528" /translation="MSENLTLRTAIVAVVIFIGLLFLMPNVVPKMPAWWPGFLPSDKI RLGLDLQGGMHLVLEVKVAQAVEASVERTAQELERRLKSEVRATRPKAIGGNQIAITV AGENDLAKLKDIIENQYSNDYEIASTKPLDRGRSEVVLRLKAEAIADIEKQASAQALE VIRNRIDQFGVAEPEIVPQEGGRILVQLPGVKEPKRALALIGKTAQLEFRLVDDTIDA NSATMDSIPPGSQLLQMYRKDPITGRTVKSPIVVRARRAMTGENITDARVRPDPDYPG NYLVLVAFNSRGAADFAEVTTKNVKRRLAIVLDGKVQSAPTIQEPITGGEARITGDFG LDEAKDLAVVLRSGALPAPIVVLEERTVGPSLGQDSINQGFLSMIVGFGVVVLFILIY YKASGIIANMALLANLVLILGAMGLLGAMPEFQATLTMPGIAGIILTIGMAVDANVLI FERIREELRAGKTPAAAVEAGYGRATMTILDANITTLIVALVLLQFGTGPVRGFAVTL SLGIASSLFTAITLTRVVFDWILRKYQPKKLSI" misc_feature 1198983..1200587 /locus_tag="Deba_1073" /note="preprotein translocase subunit SecD; Reviewed; Region: secD; PRK05812" /db_xref="CDD:180271" misc_feature 1199076..1199162 /locus_tag="Deba_1073" /note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549" /db_xref="CDD:116168" misc_feature 1199943..1200524 /locus_tag="Deba_1073" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" gene 1200617..1201843 /locus_tag="Deba_1074" /db_xref="GeneID:9493529" CDS 1200617..1201843 /locus_tag="Deba_1074" /note="COGs: COG0341 Preprotein translocase subunit SecF; InterPro IPR003335:IPR005665; KEGG: dsa:Desal_1637 protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: C6BSZ5 Protein-export membrane protein SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: Protein export membrane protein; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF" /codon_start=1 /transl_table=11 /product="protein-export membrane protein SecF" /protein_id="YP_003807036.1" /db_xref="GI:302342507" /db_xref="GeneID:9493529" /translation="MELIRPDINIDFIGKRYLAFAASGLLILMTVIVLAINGGPRYGV DFAGGVLVQVRFNKATDAGQIKKALAPLGMADATVQFFGGDDKREFLVRTEKQDMDMT GLGDKINQTLAQAYGQGEFEVRRVEMVGPKVGHDLREKALLAILYSILMIAVYISGRF EGKWALAGLMAAVLVGVTLLVEAISGGAGAVTLIVIAMAVTMAACWYLKLRYALGAIV ALLHDVIITVGVFSLLDKEFTLATVAAILTIIGYSLNDTIIVFDRIRENLTKSGGGGD LAQTINASVNQTLSRTILTSGTTLMVLVCLWALGGGVIEDFALALLVGIGVGTYSSVF VASPVLLLLPEGKPRLPFGGEAAAKAEPAKVAPAAKAQPAAEAGKKAAPATKAQSAAK ASANKQRQGKARGKRR" misc_feature 1200635..1201666 /locus_tag="Deba_1074" /note="preprotein translocase subunit SecF; Reviewed; Region: secF; PRK13022" /db_xref="CDD:183847" misc_feature 1200971..1201645 /locus_tag="Deba_1074" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" gene 1201904..1202686 /locus_tag="Deba_1075" /db_xref="GeneID:9493530" CDS 1201904..1202686 /locus_tag="Deba_1075" /note="COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: gsu:GSU0106 soj protein; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: Q74GY7 Soj protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_003807037.1" /db_xref="GI:302342508" /db_xref="GeneID:9493530" /translation="MGRVICIANQKGGVGKTTTAVNLAASLAAAERDVLLVDCDPQGN ASSGLGVKIGPGDNTVYQMLIDHCRAADALRATELEHLTLIGSNVNLFGVEVELGGTE GSERLLANSLGEIVSRFEYIFLDCPPSLGLLTLNALTACDGVLIPLQCEYYALEGLTQ LLQTVARVRRNFNAGLGLEGIVLTMYDGRNNLARQVEGDVRGHFGEMVYETVIPRNVR LSEAPSHGKPVLLYDIKSSGAQAYLSLAREMMAGPRRRGEAS" misc_feature 1201904..1202677 /locus_tag="Deba_1075" /note="ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192" /db_xref="CDD:31385" misc_feature 1201913..>1202029 /locus_tag="Deba_1075" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature 1201934..1201954 /locus_tag="Deba_1075" /note="P-loop; other site" /db_xref="CDD:73302" misc_feature 1201952..1201954 /locus_tag="Deba_1075" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" misc_feature <1202258..1202455 /locus_tag="Deba_1075" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature 1202276..1202278 /locus_tag="Deba_1075" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene 1202683..1203579 /locus_tag="Deba_1076" /db_xref="GeneID:9493531" CDS 1202683..1203579 /locus_tag="Deba_1076" /note="COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: gme:Gmet_3412 chromosome segregation DNA-binding protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: B9XGP1 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins" /codon_start=1 /transl_table=11 /product="parB-like partition protein" /protein_id="YP_003807038.1" /db_xref="GI:302342509" /db_xref="GeneID:9493531" /translation="MSGQGPRKKPAKQALGRGLAALLGEDLAPPTPAGEPMPRPNDRI IDLPLERLEPNPYQPRRLYDQDALRALADSIAEHGVLQPLVVRPAPGGYQLIAGERRM RACQMLGKDTVPVVVRQATDQQALLLALLENLQREDLNPMEEAKAFERLVEEFSLSHD EIASGVGKDRSTVANSLRLLKLPAELQQDISDGRISAGHARALLALQNAARMRAVRDQ IVAGGLSVRATERLVKKLLEPGQGAPAEPTPIQLHIDSLADDLARRFGARVQIKRRGK KGSIVIPFASDDELERLLGLLR" misc_feature 1202809..1203279 /locus_tag="Deba_1076" /note="ParB-like partition proteins; Region: parB_part; TIGR00180" /db_xref="CDD:161748" misc_feature 1202821..>1203033 /locus_tag="Deba_1076" /note="ParB-like nuclease domain; Region: ParBc; cl02129" /db_xref="CDD:154762" gene 1203585..1204088 /locus_tag="Deba_1077" /db_xref="GeneID:9493532" CDS 1203585..1204088 /locus_tag="Deba_1077" /note="InterPro IPR010298; KEGG: dol:Dole_1633 hypothetical protein; PFAM: protein of unknown function DUF901; SPTR: A9A0D7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF901)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807039.1" /db_xref="GI:302342510" /db_xref="GeneID:9493532" /translation="MQLVIDGYNLIHHVPELAMAEATGQGADALAAALNLYRRKKAHK ITIVLDGGPEPEGGRQALHGVPTLFSGRARSADDVIADLAARHGPGLTVVTSDRDLAR RCQAHDAQVVSSGRFAALLMDCVLGAGGSAEDEGDDGWDFSTRKKGPSTRAPKRLRRR KSVLGKL" misc_feature 1203591..>1203947 /locus_tag="Deba_1077" /note="YacP-like NYN domain; Region: NYN_YacP; cl01491" /db_xref="CDD:194148" gene complement(1204095..1204769) /locus_tag="Deba_1078" /db_xref="GeneID:9493533" CDS complement(1204095..1204769) /locus_tag="Deba_1078" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR009082:IPR001789:IPR003661; KEGG: mxa:MXAN_1245 sigma-54 dependent DNA-binding response regulator SasR; PFAM: response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; SPTR: Q1DCW9 Sigma-54 dependent DNA-binding response regulator SasR; PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807040.1" /db_xref="GI:302342511" /db_xref="GeneID:9493533" /translation="MSNNHANKLSVLIVDDSKTAREHLHSVLGQLGHDAAAVCCGQDS LNAIERTAFDLILVDLVLPDIDGIDVLKAMRAICPDTPIIIVTAFGSMQSAVQALRHG ADDYIAKPIDEEVMAVRINAVLAARALRRSHQEHEKLKAAMATAGATAHEINQPLMAI LTASELLAQSDNKKRMKELAAIIAEQTKRMGDIVWKLSRLTSYKTMPYTRETDILDLE ASSQKP" misc_feature complement(1204407..1204739) /locus_tag="Deba_1078" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1204398..1204736) /locus_tag="Deba_1078" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1204440..1204445,1204452..1204454, 1204509..1204511,1204569..1204571,1204593..1204595, 1204722..1204727)) /locus_tag="Deba_1078" /note="active site" /db_xref="CDD:29071" misc_feature complement(1204593..1204595) /locus_tag="Deba_1078" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1204569..1204577,1204581..1204586)) /locus_tag="Deba_1078" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1204437..1204445) /locus_tag="Deba_1078" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1204188..1204319) /locus_tag="Deba_1078" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(1204317..1204319) /locus_tag="Deba_1078" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(order(1204191..1204193,1204200..1204202, 1204212..1204214,1204221..1204223,1204233..1204235, 1204281..1204283,1204290..1204292,1204302..1204304, 1204311..1204313)) /locus_tag="Deba_1078" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" gene complement(1204873..1205457) /locus_tag="Deba_1079" /db_xref="GeneID:9493534" CDS complement(1204873..1205457) /locus_tag="Deba_1079" /note="COGs: COG0344 membrane protein; InterPro IPR003811:IPR020788; KEGG: pca:Pcar_0651 hypothetical protein; PFAM: protein of unknown function DUF205; SPTR: Q3A6U7 UPF0078 membrane protein Pcar_0651; PFAM: Domain of unknown function (DUF205); TIGRFAM: conserved hypothetical integral membrane protein TIGR00023" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807041.1" /db_xref="GI:302342512" /db_xref="GeneID:9493534" /translation="MDWRFLGLVFGAYLIGAIPSGVLVSRLGGKSDPRLGGSGNIGAT NVLRVSGRLAGALTLALDLAKGAGPTLAAALLLAPWQTALVGVAAFAGHIFPVYLHFR GGKGVATALGVWLIWSPASFLAVAAIIVFLAWRTGQMSVGSLAGCGSAPLWLLIDHCP AAMLWAAVVMSGLIVWRHKDNIVRLRSGMENKLK" misc_feature complement(1204876..1205445) /locus_tag="Deba_1079" /note="Domain of unknown function (DUF205); Region: DUF205; cl00410" /db_xref="CDD:193806" gene 1205579..1205998 /locus_tag="Deba_1080" /db_xref="GeneID:9493535" CDS 1205579..1205998 /locus_tag="Deba_1080" /note="KEGG: dol:Dole_0381 hypothetical protein; SPTR: A8ZT27 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807042.1" /db_xref="GI:302342513" /db_xref="GeneID:9493535" /translation="MRICVIDGQGGGIGSVIIRRIKDEFGENVEVLALGTNAIATAQM MKARANRGATGENAIIVSIQEADVVIGPVSIVLANAMMGEVSPAIAQAVATCRARKFL LPLTRENVEIVSVNHEPLPHQVDQIIQVGLKEMMKDV" misc_feature 1205642..1205962 /locus_tag="Deba_1080" /note="Domain of unknown function (DUF3842); Region: DUF3842; pfam12953" /db_xref="CDD:193426" gene 1205991..1206185 /locus_tag="Deba_1081" /db_xref="GeneID:9493536" CDS 1205991..1206185 /locus_tag="Deba_1081" /note="InterPro IPR019300; KEGG: tye:THEYE_A0086 hypothetical protein; PFAM: RNA-binding protein, predicted; SPTR: B5YHB6 Putative uncharacterized protein; PFAM: Predicted RNA-binding protein" /codon_start=1 /transl_table=11 /product="RNA-binding protein, predicted" /protein_id="YP_003807043.1" /db_xref="GI:302342514" /db_xref="GeneID:9493536" /translation="MCEATAYIVDAAGEEKLLLADVDVIEPEDGGQVRLVSIYGEQKV IKGRIKSMSLVNHRVVLAEA" misc_feature 1205991..1206179 /locus_tag="Deba_1081" /note="Predicted RNA-binding protein; Region: RNA_bind_2; cl00662" /db_xref="CDD:153918" gene 1206214..1206858 /locus_tag="Deba_1082" /db_xref="GeneID:9493537" CDS 1206214..1206858 /locus_tag="Deba_1082" /note="COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: dol:Dole_2131 hypothetical protein; SPTR: A8ZU02 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807044.1" /db_xref="GI:302342515" /db_xref="GeneID:9493537" /translation="MADQAAIEKIVANLHWLGHDCFRLDRPQGPIYWDPYRIAGGPTA SLILITHDHYDHCSPEDVAKIQGPETVILAEADAAEKLTGKVAAMVPGKTGRVGDVDV VAVPAYNLGKDFHPKNNLWLGYVIKVDGVSIYHAGDSDYIPEMDKLIVDIALLPVSGT YVMTAEEAAQAAMAIGPKLAIPMHYGAIVGDETDALRFAKELDGVIPVRVLPKE" misc_feature 1206253..1206846 /locus_tag="Deba_1082" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 1206983..1207846 /locus_tag="Deba_1083" /db_xref="GeneID:9493538" CDS 1206983..1207846 /locus_tag="Deba_1083" /note="InterPro IPR000620; KEGG: gur:Gura_2208 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: A5G3M5 Putative uncharacterized protein; PFAM: EamA-like transporter family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807045.1" /db_xref="GI:302342516" /db_xref="GeneID:9493538" /translation="MSWFLLALGSALGMAIADYFTKRHLSDLPVNQAVMARIFGLLPA PVVILAVTPWPAVGADFAWPVLLALPLEVAALFLYLRAMAIAPLGLVQPFFATTPLFV MLTGLPILGERPTWAGAAGVLAMAAGGYVVNLHQVRHGWLEPIKAIGRQRGVLLALAA AAIYSLTAVLGKAAVNASNPWFMAGVYPLLVALALAAAARARGPIGWAWLRRPWGLAG VSCGVAVMMVCHFMAIAVAPAAYMLAVKRGGAILAVLLGGVLLGEGHLAQRLAACALV VAGGALIVAFG" gene complement(1207859..1208893) /locus_tag="Deba_1084" /db_xref="GeneID:9493539" CDS complement(1207859..1208893) /locus_tag="Deba_1084" /note="COGs: COG0569 K+ transport systems NAD-binding component; InterProIPR016040:IPR013099:IPR003148:IPR006037:IPR 000209; KEGG: glo:Glov_0875 TrkA-N domain protein; PFAM: TrkA-N domain protein; Ion transport 2 domain protein ; TrkA-C domain protein; SPTR: B3E534 TrkA-N domain protein; PFAM: TrkA-N domain; Ion channel; TrkA-C domain" /codon_start=1 /transl_table=11 /product="TrkA-N domain protein" /protein_id="YP_003807046.1" /db_xref="GI:302342517" /db_xref="GeneID:9493539" /translation="MSHGHPVGGFLVQTRLLIGITLSLAVLAGGTLGYYWLEGWDLFD SLYMTIITVTTVGFGEVRPLSPEGRTFTMVLLLVGVGIILYLMTTMTQMVVEGKIREA LGRRSVQKHIRSMRGHFIVCGYGRIGSQVAQMLRENGVKTVIVDSSDRIRDRLTEANQ EFIFGSATEDECLMAAGIDRARGLVASVSSDADNVFITLTAKGMNPNLMVIARATEPG SELKLKRAGADKVVSPYFIGARRIAQMVIRPTVADFVDLTFHTSDMALRMEELTVGPK AELVGVTLMDSGIRKNLDVIVLAIKKPGGGMVFNPPASTVVEVGDTLVTMGPRQSMNR LGQMADAVED" misc_feature complement(<1208675..1208833) /locus_tag="Deba_1084" /note="Ion channel; Region: Ion_trans_2; cl11596" /db_xref="CDD:196264" misc_feature complement(<1208567..>1208761) /locus_tag="Deba_1084" /note="Voltage-dependent potassium channel; Provisional; Region: PLN03192" /db_xref="CDD:178734" misc_feature complement(1207889..1208539) /locus_tag="Deba_1084" /note="K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]; Region: TrkA; COG0569" /db_xref="CDD:30915" misc_feature complement(1208192..1208539) /locus_tag="Deba_1084" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1207889..1208092) /locus_tag="Deba_1084" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(1208890..1209735) /locus_tag="Deba_1085" /db_xref="GeneID:9493540" CDS complement(1208890..1209735) /locus_tag="Deba_1085" /note="InterPro IPR011723; KEGG: dma:DMR_21170 hypothetical protein; SPTR: C4XS86 Putative uncharacterized protein; TIGRFAM: MJ0042 family finger-like protein; TIGRFAM: MJ0042 family finger-like domain" /codon_start=1 /transl_table=11 /product="MJ0042 family finger-like protein" /protein_id="YP_003807047.1" /db_xref="GI:302342518" /db_xref="GeneID:9493540" /translation="MIVTCPKCQAKFNLDESKIPPEGAWVRCSKCDEVFQVFAPGAPR PDEAADDPSELDADLFTSDDADMDDDLDLDLDARPAAEGSGRGKAFKIFFWLFAAILI VALLAVGGVITLGRMGMGGEIVSRLAQVPYLGQLMGTPAESAIQKNNDPTGTANMALS QVRGSYRINQHANQIFVISGRVDNAGDETRAEILVRAILLNDKGEKVVAATSYAGQTL TQEQLRDMTIQDIARRLSSPVGEDGVKHVVAPNASVPFMIVFANLPSNLSEYMTEVVS TKPVQ" misc_feature complement(1209622..1209735) /locus_tag="Deba_1085" /note="MJ0042 family finger-like domain; Region: MJ0042_CXXC; TIGR02098" /db_xref="CDD:131153" gene complement(1209747..1210298) /locus_tag="Deba_1086" /db_xref="GeneID:9493541" CDS complement(1209747..1210298) /locus_tag="Deba_1086" /EC_number="2.4.2.8" /note="COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: sfu:Sfum_1422 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: A0LI61 Hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="hypoxanthine phosphoribosyltransferase" /protein_id="YP_003807048.1" /db_xref="GI:302342519" /db_xref="GeneID:9493541" /translation="MTLSNNITLHPVISPEQIRARVGQLADSLKADLGDERPVLLGVL KGCFMFFTDLARQLDLDADIDFVRLASYGAGIESSGRVHMVKSPEVELKGRTVIIVED IVDTGLTMRWLIDHLAQLGPKRIKVCAFIDKPERRQTPVEIDYVGFHVPEGFLVGYGL DYNEKYRNLAGVFEVRFEPSDRK" misc_feature complement(1209777..1210265) /locus_tag="Deba_1086" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene complement(1210602..1210865) /locus_tag="Deba_1087" /db_xref="GeneID:9493542" CDS complement(1210602..1210865) /locus_tag="Deba_1087" /note="InterPro IPR005631; KEGG: rce:RC1_1263 TPR domain protein; PFAM: protein of unknown function DUF339; SPTR: Q2C9T4 TPR repeat family protein; PFAM: Protein of unknown function (DUF339)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807049.1" /db_xref="GI:302342520" /db_xref="GeneID:9493542" /translation="MSDEMEPRRKRLRMAAGRRGFLEVELAMRPFLERELAGLNENEL DQLETLARLEDLDLWAVISQAAPPPPGVEPTLVARIRAAALRR" misc_feature complement(1210635..1210865) /locus_tag="Deba_1087" /note="Flavinator of succinate dehydrogenase; Region: Sdh5; cl01110" /db_xref="CDD:186339" gene complement(1210975..1211685) /locus_tag="Deba_1088" /db_xref="GeneID:9493543" CDS complement(1210975..1211685) /locus_tag="Deba_1088" /EC_number="1.3.5.1" /note="COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterProIPR009051:IPR001041:IPR017900:IPR012675:IPR 012285:IPR017896:IPR004489; KEGG: bpt:Bpet1823 succinate dehydrogenase iron-sulfur subunit; PRIAM: Succinate dehydrogenase (ubiquinone); SPTR: C1SJU7 Succinate dehydrogenase subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase and fumarate reductase iron-sulfur protein" /protein_id="YP_003807050.1" /db_xref="GI:302342521" /db_xref="GeneID:9493543" /translation="MEKIVFSILRYDPEKDKKPHYQDFDVEIRRPGMMILDGLNQIRW EQDGTLAYRRSCREGVCGSDGVNVNGVNMLTCVTHITEVVKKGRLVIQPLPSLPLVKD LVVDLDDFFNKYFTVKPYLISKTPPPHRERLQSPAQRKKLDGLYECILCACCSSSCPS YWANPEYLGPSAMLNVARFVEDSRDDGADERLDMLEDRIGVWRCHTILNCVEACPKSL NPTQAIATLKKLLVQRRF" misc_feature complement(1210978..1211670) /locus_tag="Deba_1088" /note="succinate dehydrogenase iron-sulfur subunit; Reviewed; Region: sdhB; PRK05950" /db_xref="CDD:180322" gene complement(1211699..1213477) /locus_tag="Deba_1089" /db_xref="GeneID:9493544" CDS complement(1211699..1213477) /locus_tag="Deba_1089" /EC_number="1.3.99.1" /note="COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterProIPR015939:IPR003953:IPR004112:IPR003952:IPR 011281:IPR014006; KEGG: apt:APA01_00330 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C1SJU6 Succinate dehydrogenase subunit A; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, flavoprotein subunit" /protein_id="YP_003807051.1" /db_xref="GI:302342522" /db_xref="GeneID:9493544" /translation="MAIKSDIIVHRVDALVAGAGGAGLRAALEAGKQVDTAVITQVFP TRSHTVSAQGGIGASLGNVEQDSWHYHMFDTVKGSDWLGDQDAIEFMCREAPSVVIEL EHMGLPFSRMDDGRIYQRAFGGHTSKYGTAAVHRSCAAADRTGHAMLHTLFEECLRCG VKFYNEYYMLQLITNQGHVCGALCWDMIKGGFHLFHAKATLFATGGYARVFTTTSNAH ICSGDGASLALRAGLAVQDMEFLQFHPTGILGAGNLITEGVRGEGGFLLNALGQRFME TCAPHEKDLACRDVVSRGIAEELRGGRGCGPKKDHVLLQIHHIGAETIMERLPGIWEL TKVFAGVDCTKEPIPVVPTAHYSMGGIPTNRRAEVVVPGADGPETVVPGFYAAGEAAC ASVHGANRLGTNSLLDLMVFGREGGRRMAQYAQQNETWPDLPENAGKQGLAEVERLVN GGGGVRLGPLMEQLRDDMERHCGVFRTADDLEQLRGKLAAHRAAYAKVGVADKGAAYN LDLIEALELGHMLDVCQAICQGALARQESRGGHYRDDYPQRDDANWHKHTLALLEPDG QARLEYKPVRMQPLSVPTIDLAERKY" misc_feature complement(1211735..1213372) /locus_tag="Deba_1089" /note="succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK09078" /db_xref="CDD:181641" misc_feature complement(1212230..1213366) /locus_tag="Deba_1089" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(1211702..1212094) /locus_tag="Deba_1089" /note="domain; Region: Succ_DH_flav_C; pfam02910" /db_xref="CDD:190472" gene complement(1213480..1213848) /locus_tag="Deba_1090" /db_xref="GeneID:9493545" CDS complement(1213480..1213848) /locus_tag="Deba_1090" /note="COGs: COG2142 Succinate dehydrogenase hydrophobic anchor subunit; InterPro IPR000701:IPR014312; KEGG: cts:Ctha_0457 succinate dehydrogenase, membrane subunit, PFAM: succinate dehydrogenase cytochrome b subunit; SPTR: B3QUM2 Succinate dehydrogenase, membrane subunit, TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, hydrophobic membrane anchor protein" /protein_id="YP_003807052.1" /db_xref="GI:302342523" /db_xref="GeneID:9493545" /translation="MKFLGSGRTGAFEWFFQRVSGVALVALLGLHFILIHYTGEPGPV TYDKVAPRLASPLYKAWELLFLVLALYHAMNGVKLVIDDYVHNSTWRSCLLGLSWLVA LALLIFGALTIITFSYQPGA" misc_feature complement(<1213576..1213821) /locus_tag="Deba_1090" /note="Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) family, transmembrane subunits; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR...; Region: SQR_QFR_TM; cl00881" /db_xref="CDD:193963" misc_feature complement(order(1213612..1213614,1213798..1213800)) /locus_tag="Deba_1090" /note="Iron-sulfur protein interface; other site" /db_xref="CDD:48054" misc_feature complement(order(1213621..1213623,1213633..1213635, 1213777..1213779)) /locus_tag="Deba_1090" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:48054" gene complement(1213858..1214235) /locus_tag="Deba_1091" /db_xref="GeneID:9493546" CDS complement(1213858..1214235) /locus_tag="Deba_1091" /note="InterPro IPR000701:IPR014314:IPR014312; KEGG: rmr:Rmar_0208 succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; SPTR: D0MD04 Succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; succinate dehydrogenase, cytochrome b556 subunit" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, cytochrome b556 subunit" /protein_id="YP_003807053.1" /db_xref="GI:302342524" /db_xref="GeneID:9493546" /translation="MKAYPPKVRYRLHPGYIAWLFQRISGLALVLYLIMHVYVIHHIA LGRQAFDEIMAVVQSPLFHLAEAALLAAVVYHGVNGLRVILLDYGRAADKQKISPWVL GVMSLCAVIVLAGAIPMIKLALH" misc_feature complement(1213894..1214184) /locus_tag="Deba_1091" /note="Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) family, transmembrane subunits; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR...; Region: SQR_QFR_TM; cl00881" /db_xref="CDD:193963" misc_feature complement(order(1213987..1213989,1214170..1214172)) /locus_tag="Deba_1091" /note="Iron-sulfur protein interface; other site" /db_xref="CDD:48054" misc_feature complement(order(1213996..1213998,1214008..1214010, 1214149..1214151)) /locus_tag="Deba_1091" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:48054" gene complement(1214299..1214856) /locus_tag="Deba_1092" /db_xref="GeneID:9493547" CDS complement(1214299..1214856) /locus_tag="Deba_1092" /note="COGs: COG1838 Tartrate dehydratase subunit beta/Fumarate hydratase class I C-terminal domain; InterPro IPR004647; KEGG: nis:NIS_0837 fumarate/tartrate hydratase, subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; SPTR: A6Q390 Fumarate/tartrate hydratase, subunit beta; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta; PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region" /codon_start=1 /transl_table=11 /product="hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta" /protein_id="YP_003807054.1" /db_xref="GI:302342525" /db_xref="GeneID:9493547" /translation="MSQIKRLSTPLSDADVEGLRSGDRVLLSGTIYTGRDAAHKRIVA AMAAGQAPPFDPRGAVIFYVGPSPAPPGRVIGAAGPTTSYRMDAYAPTLIEAGLKAMI GKGGRGPAVKQAMQKHKAVYLAAIGGAGALMAHCIKAAEVIAYDDLGPEAVRRLEVAE MPLFVVNDVYGGDLYEEGRAAYQKK" misc_feature complement(1214317..1214832) /locus_tag="Deba_1092" /note="Fumarase C-terminus; Region: Fumerase_C; cl00795" /db_xref="CDD:186192" gene complement(1214853..1215701) /locus_tag="Deba_1093" /db_xref="GeneID:9493548" CDS complement(1214853..1215701) /locus_tag="Deba_1093" /EC_number="4.2.1.2" /note="COGs: COG1951 Tartrate dehydratase subunit alpha/Fumarate hydratase class I N-terminal domain; InterPro IPR004646; KEGG: dma:DMR_05730 L-tartrate dehydratase subunit alpha; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; PRIAM: Fumarate hydratase; SPTR: C0GM93 Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; PFAM: Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region" /codon_start=1 /transl_table=11 /product="hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha" /protein_id="YP_003807055.1" /db_xref="GI:302342526" /db_xref="GeneID:9493548" /translation="MSDLRVIDVGQISRELARLCGEAGLILPDDVSRAFASAMQSEPS PVGREVLQVLIDNARLAAEERLPICQDCGLAVVFVDVGQDVHLVGGDLAEAVNAGVRQ GYQEHYLRKSVCHPFSRANTGDNTPCVVHTRIVPGDKVRLSLLPKGGGSENMSRVLLL TPAQGLEGVKKAVLEAVLHAGPNPCPPIILGVAVGGTFDDAAVRAKRVFLRHLGSQNP DPEAAALEAELLAMVNDTGIGPAGLGGGTTCLGVFVDIAPCHIASLPVAINVQCHAAR HKEAVL" misc_feature complement(1214856..1215689) /locus_tag="Deba_1093" /note="Fumarate hydratase (Fumerase); Region: Fumerase; cl00851" /db_xref="CDD:186222" gene 1215972..1216298 /locus_tag="Deba_1094" /db_xref="GeneID:9493549" CDS 1215972..1216298 /locus_tag="Deba_1094" /note="KEGG: mxa:MXAN_3189 hypothetical protein; SPTR: C1FJ82 Aspartate/tyrosine/aromatic aminotransferase; PFAM: Protein of unknown function (DUF493)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807056.1" /db_xref="GI:302342527" /db_xref="GeneID:9493549" /translation="MSECTCGKCAAQPALSAEAVALLERHHSFPGPYMFKVIGFEAPS YVDDVRRAVEGVLGPLGEEGQMRCRPSSGGKYVAVTLEVLVRDSGQVLAVYAALRGVS GVVALV" misc_feature 1216038..1216283 /locus_tag="Deba_1094" /note="Protein of unknown function (DUF493); Region: DUF493; cl01102" /db_xref="CDD:194035" gene complement(1216305..1216553) /locus_tag="Deba_1095" /db_xref="GeneID:9493550" CDS complement(1216305..1216553) /locus_tag="Deba_1095" /note="KEGG: dal:Dalk_5045 hypothetical protein; SPTR: C0GPX6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807057.1" /db_xref="GI:302342528" /db_xref="GeneID:9493550" /translation="MDQRIFELGLSVEATSLYLLLCPLAEGGAALTRQNVMSYWNASP AKLEAAAAELSVHGVIEQNDDGAWEIRPSQYWAGSSLA" gene 1216668..1217849 /locus_tag="Deba_1096" /db_xref="GeneID:9493551" CDS 1216668..1217849 /locus_tag="Deba_1096" /note="KEGG: SPATA5L1; spermatogenesis associated 5-like 1; SPTR: C2CXF7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807058.1" /db_xref="GI:302342529" /db_xref="GeneID:9493551" /translation="MSFPVLLFPDTVARPSLLGRLTPLCQPLCVLAPPSLDQGGEPAY PAALVQVARPTASTGADQAADDQPRRMAGLLRQWEGWARQHHGSGLLEAVKTGVLPQP PETVRTVMSELKNYGQSVVGQEQPPGVAADLFLHLAHIHDRQAADIEQALAQYENERR ELARSMGHDQQGHDPAEFEGLDPAALPPVDYSQALDHLLPRRLSAWSVLADALEDDQP WLIGADAQAVQTLIERANARFAPGDGLRSPAGASAPFGSGVAAAGSARAQVAAGLDLP DLGQLTPVQLEALIDKLGPELAAIQAELNDLLQWLASAPWNAQTQAEAARRLTALGDH YAALLAAVGLRPAGVNRLDVVVFPGLGRADLLKLMRGETIAEPAAAGAFALLWLAPAE A" gene 1217931..1218794 /locus_tag="Deba_1097" /db_xref="GeneID:9493552" CDS 1217931..1218794 /locus_tag="Deba_1097" /note="InterPro IPR016035:IPR002641; KEGG: reu:Reut_A3434 patatin; PFAM: patatin; SPTR: Q8Y3G7 Putative esterase of the alpha-beta hydrolase superfamily protein; PFAM: patatin-like phospholipase" /codon_start=1 /transl_table=11 /product="patatin" /protein_id="YP_003807059.1" /db_xref="GI:302342530" /db_xref="GeneID:9493552" /translation="MWRPGAEFKSIVFAGGGNRCFWQVGFWETVAPALGLRPAVIAGV SAGACMAALLLAGQKDRATAYFLKATAANAKNFYPGLLLKGQRPLPHPAIFEATMRAG LDQAGLERLRSGPELRVLLARPPRWTGPATAAMLGILAYSLEKALKAPLHPQWPSRLG FTPEVALAGQCHDVEDLINLMTATCCTPPLLPPMYRGQQPVLDGGLIDNVPLAALGPD DGPALILLTRRYDPRLLRGHQGRVYIQPSRPIPVNKWDYASPDLSLATLELGRQDGMA FIEGGPQALQN" misc_feature 1217961..1218575 /locus_tag="Deba_1097" /note="Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396" /db_xref="CDD:196212" gene complement(1218830..1219630) /locus_tag="Deba_1098" /db_xref="GeneID:9493553" CDS complement(1218830..1219630) /locus_tag="Deba_1098" /note="COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: dal:Dalk_0778 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: B8FHR6 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_003807060.1" /db_xref="GI:302342531" /db_xref="GeneID:9493553" /translation="MDKPLLIEKQGHIAWLTLNRPDRYNAMSMAMYEMFLEEMPKLDA DDDVRVVVIKAAGKNFTSGIDLNDFTNLREKPTALMRERLRLHILHLQESMSVVEKCR KPVIAAVHGACIGGGVDLLSACDIRLCEAKSYFSIRETKMAIIADLGTLQRFHTIVGQ GHYRELALTSRDFSAQEALAMGFVTHVYDDQAQLLAEAEKMARQIAANPPLTVQGTKD LMNFTRDFGVQAGLQYVAQKNSAQIISEDLMEAIAAFMEKRPPQFKGN" misc_feature complement(1219016..1219618) /locus_tag="Deba_1098" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(1218836..1219612) /locus_tag="Deba_1098" /note="enoyl-CoA hydratase; Provisional; Region: PRK06142" /db_xref="CDD:180422" misc_feature complement(order(1219205..1219207,1219214..1219219, 1219283..1219291,1219295..1219297,1219433..1219447, 1219457..1219459,1219553..1219555,1219559..1219561)) /locus_tag="Deba_1098" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(1219283..1219285,1219439..1219441)) /locus_tag="Deba_1098" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(1219016..1219021,1219028..1219030, 1219076..1219078,1219085..1219087,1219118..1219120, 1219127..1219132,1219136..1219141,1219145..1219150, 1219163..1219168,1219172..1219180,1219184..1219186, 1219202..1219213,1219247..1219258,1219319..1219321, 1219343..1219345)) /locus_tag="Deba_1098" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(1219683..1220816) /locus_tag="Deba_1099" /db_xref="GeneID:9493554" CDS complement(1219683..1220816) /locus_tag="Deba_1099" /note="COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR015424:IPR004839:IPR015421; KEGG: gme:Gmet_0487 L-threonine O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; SPTR: Q39YE4 L-threonine O-3-phosphate decarboxylase; PFAM: Aminotransferase class I and II; TIGRFAM: L-threonine-O-3-phosphate decarboxylase" /codon_start=1 /transl_table=11 /product="aminotransferase class I and II" /protein_id="YP_003807061.1" /db_xref="GI:302342532" /db_xref="GeneID:9493554" /translation="MTQDQHQDDLLRLFGVEHLHGGDIWGAARHLGRPMEDLLDLSAS LNPLGPPPGLQKVIIEALDRLCNYPDRRAFELRERLAAKFGLRRFNVLAGNGSTALIR LLARALEFREILVLAPVFGEFTRALAAAGRHFHHYHLEESEGYALTTRHIDKIMAHNP SAVVLTNPATPSGALTAPEVIEALYRQVKRRNAWLIIDEAFIDFAPADSRDWAPPRIL EYPRLIVLRSMTKFYCLAGLRLGYVMADRDVLAEMVPLGEPWSVNTLAQAAGVFCLDQ DEFADKTRATVDRLRAQQAQALGELGLDVLPSQANYLLCRLPEGGPSAAQVAEHCFYQ GVLIRDASSFVCCGDRHFRVAVTAKRCLPRLLEALRGALAGQH" misc_feature complement(1219749..1220759) /locus_tag="Deba_1099" /note="Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]; Region: HisC; COG0079" /db_xref="CDD:30428" misc_feature complement(1219737..1220702) /locus_tag="Deba_1099" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(1220100..1220102,1220124..1220129, 1220133..1220135,1220214..1220216,1220307..1220309, 1220457..1220459,1220523..1220531)) /locus_tag="Deba_1099" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(1220010..1220012,1220019..1220021, 1220100..1220108,1220235..1220237,1220427..1220429, 1220520..1220522)) /locus_tag="Deba_1099" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(1220124..1220126) /locus_tag="Deba_1099" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(1220922..1222472) /locus_tag="Deba_1100" /db_xref="GeneID:9493555" CDS complement(1220922..1222472) /locus_tag="Deba_1100" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR011006:IPR009057:IPR001789:IPR002078:IPR 002197:IPR003593; KEGG: acp:A2cp1_0976 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: B8JEK1 Sensor protein; PFAM: Response regulator receiver domain; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003807062.1" /db_xref="GI:302342533" /db_xref="GeneID:9493555" /translation="MHNLVMVNRFTPGGRCALSQYANTPQDATEAWRPSVLVLDDEWS TLEVIRDSLAKHFAVEVASRADEALRLMEQKPFDVVLTDVRMPDMDGLSVVGQMKARH PGAQYILMTAFSDIEDTIRAIRLGVADYLRKPFTIGEVRHALNRCLEQRRLRRQNGPP RDQGPAASARLTALDPKMRQLCALADTVAPTDVTVLIGGETGTGKSLLARAIHQASPR RERPYVEINCAAIPEALIESELFGHERGSFTGAIARKIGRVEAADGGTLFLDEVGEMS LDMQAKLLRFLQEFTFERVGGAKKQSADVRVIAATNRNLREAVASGVFREDLFYRLHV IELVIPPLRDRPLDQAPLAEAFLRRFAEKYGRADCRFGPQVSRQIAAHHWPGNVRELE HAVERAVILARGSEIARLELEHAGQRAEASRADAAPEAVAAPPAEIGPLLDGRDLGQF IDDCQRQYLAGLLAKHNGRIGLVAKAAGVNPKTLYLKMTRLGLRKEDYRGERASDKSP RGDGPFVA" misc_feature complement(1220970..1222370) /locus_tag="Deba_1100" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature complement(1222029..1222364) /locus_tag="Deba_1100" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1222071..1222076,1222083..1222085, 1222140..1222142,1222200..1222202,1222224..1222226, 1222350..1222355)) /locus_tag="Deba_1100" /note="active site" /db_xref="CDD:29071" misc_feature complement(1222224..1222226) /locus_tag="Deba_1100" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1222200..1222208,1222212..1222217)) /locus_tag="Deba_1100" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1222068..1222076) /locus_tag="Deba_1100" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1221450..1221905) /locus_tag="Deba_1100" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(1221855..1221878) /locus_tag="Deba_1100" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(1221537..1221539,1221663..1221665, 1221852..1221875)) /locus_tag="Deba_1100" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(1221660..1221677) /locus_tag="Deba_1100" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(1221480..1221482) /locus_tag="Deba_1100" /note="arginine finger; other site" /db_xref="CDD:99707" gene 1222577..1222936 /locus_tag="Deba_1101" /db_xref="GeneID:9493556" CDS 1222577..1222936 /locus_tag="Deba_1101" /note="InterPro IPR001781; KEGG: dat:HRM2_33650 hypothetical protein; PFAM: LIM zinc-binding protein; SPTR: B2DD80 Putative uncharacterized protein; PFAM: LIM domain" /codon_start=1 /transl_table=11 /product="LIM zinc-binding protein" /protein_id="YP_003807063.1" /db_xref="GI:302342534" /db_xref="GeneID:9493556" /translation="MQCQKCHAPLGADEAFEFAGRTLCEDCYMDALSPTRVCDPWAVY LGSRQVEQILSPAQEKIMGLLRQHKALAPEDLRRLSGLTAKELEREIAALRHMELLRA AQTPDGGKVLKQFGDRD" misc_feature <1222583..1222660 /locus_tag="Deba_1101" /note="LIM is a small protein-protein interaction domain, containing two zinc fingers; Region: LIM; cl02475" /db_xref="CDD:189159" misc_feature order(1222583..1222585,1222592..1222594,1222646..1222648, 1222655..1222657) /locus_tag="Deba_1101" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188711" gene 1223009..1223818 /locus_tag="Deba_1102" /db_xref="GeneID:9493557" CDS 1223009..1223818 /locus_tag="Deba_1102" /note="KEGG: pag:PLES_09601 hypothetical protein; SPTR: A8W867 Outer membrane transport barrel" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807064.1" /db_xref="GI:302342535" /db_xref="GeneID:9493557" /translation="MFGTPDPSGVGLKRPRIKSGRFPQQYAFRGCVRATISGGEFTGL YAFYGAKEAEVHGGVFQENLCFYASEKTRVEGGEFNGKNAFYGAQELRVEGGTFNGDW ALCEAQGALISGGVFSGAGALSEAREAKVADGRFVGADFGITSRDVIVRGGVFEGPGF LRGSRGALVLGGDIAGEGALERAEDARVFLDGQLRHVRNPHSGIIVARRIGVVDFDGP PPDDLIIVAEEVGEGARFARLLPAGLIGPPPGDAAKARKQLLELAARAMQA" gene 1223850..1224884 /locus_tag="Deba_1103" /db_xref="GeneID:9493558" CDS 1223850..1224884 /locus_tag="Deba_1103" /note="COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: bga:BG0748 MinD-related ATP-binding protein; SPTR: C0T1H1 ATP-binding protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain" /codon_start=1 /transl_table=11 /product="MinD-related ATP-binding protein" /protein_id="YP_003807065.1" /db_xref="GI:302342536" /db_xref="GeneID:9493558" /translation="MSARLSAKNAAVTLPVGGGKGGIGKSALVANLGLALARLERRVL AVDADLGGSDLHAVLGLANDRPGLGELLTAKGHAVADFVRPALEPRFFFLPGDAMIVA TANPSFQKKRKILHAIKAWPADFTLLDLGAGASITVMDFFLTSPLSLVVMLPEQPAVM NAFNFLKNAVFRALDRIFRDNAGARAALRDFQTRGRGPGAMKIDELVAAIEKAVPGQG ERARRAVGRWRPKLVLNRARRVDDFAFARQLTRWAAEDLGLAIEVLGFLPEDEAVRQA AGQGLPALDLDPRAPFCRAVALLAQRIGQWAGRADEWRAHGAFDDSFQRAATDFAGLF PPPGRVERRP" misc_feature 1223994..>1224386 /locus_tag="Deba_1103" /note="Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]; Region: flhG; COG0455" /db_xref="CDD:30803" misc_feature <1224216..>1224386 /locus_tag="Deba_1103" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature <1224591..1224758 /locus_tag="Deba_1103" /note="cell division ATPase MinD, archaeal; Region: minD_arch; TIGR01969" /db_xref="CDD:131024" gene 1224881..1225129 /locus_tag="Deba_1104" /db_xref="GeneID:9493559" CDS 1224881..1225129 /locus_tag="Deba_1104" /note="KEGG: cce:Ccel_0234 cadmium-translocating P-type ATPase; SPTR: B8I541 Cadmium-translocating P-type ATPase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807066.1" /db_xref="GI:302342537" /db_xref="GeneID:9493559" /translation="MSQIIDPYERAKSQRRRRNTAFLRRHWRVAAPLIVVAAVALFVL PWLFLPMIVALCWQAIACMGVYLLARSQTTAFHPEDED" gene complement(1225165..1225512) /locus_tag="Deba_1105" /db_xref="GeneID:9493560" CDS complement(1225165..1225512) /locus_tag="Deba_1105" /note="COGs: COG3370 conserved hypothetical protein; InterPro IPR009710; KEGG: dal:Dalk_4103 protein of unknown function DUF1291; PFAM: protein of unknown function DUF1291; SPTR: B8FM55 Putative uncharacterized protein; PFAM: DsrE/DsrF-like family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807067.1" /db_xref="GI:302342538" /db_xref="GeneID:9493560" /translation="MPDRLDKLAVIWSSADAEVARSAAFMYARNSLVRGWWHQVRLIV WGPSAKTLAFDADLQLELTALADAGVELYACKACAESHGVGERLERIGVQVMYMGQPL TDMLKQGWRVITF" misc_feature complement(1225168..1225494) /locus_tag="Deba_1105" /note="DsrE/DsrF-like family; Region: DrsE; cl00672" /db_xref="CDD:186138" gene complement(1225596..1226075) /locus_tag="Deba_1106" /db_xref="GeneID:9493561" CDS complement(1225596..1226075) /locus_tag="Deba_1106" /note="COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR016027:IPR000424:IPR012340:IPR011344; KEGG: hoh:Hoch_5071 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: D0LVJ8 Single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)" /codon_start=1 /transl_table=11 /product="single-strand binding protein" /protein_id="YP_003807068.1" /db_xref="GI:302342539" /db_xref="GeneID:9493561" /translation="MARGVNKVIILGNLGADPEMKYTANGTAVCNLRIATSEAFKGQD GNWQERTEWHRVVVYGKSAENCGQYLSKGRQVYIEGRLQTRSWDDQSGQKRWMTEVVA REVQFLGGGQQGGQGGGYGGQQGGQGGGYGGGYGQQQGGHPDDGFGGPPPSDDDIPF" misc_feature complement(1225752..1226054) /locus_tag="Deba_1106" /note="SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496" /db_xref="CDD:72968" misc_feature complement(order(1225782..1225784,1225791..1225793, 1225824..1225826,1225851..1225853,1225914..1225916, 1225920..1225922,1225962..1225970,1226043..1226054)) /locus_tag="Deba_1106" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:72968" misc_feature complement(order(1225773..1225775,1225779..1225781, 1225818..1225823,1225827..1225829,1225833..1225835, 1225857..1225862,1225899..1225901,1225905..1225907, 1225911..1225913,1225917..1225919,1225923..1225928, 1225959..1225964,1225983..1225985,1226013..1226015, 1226031..1226039)) /locus_tag="Deba_1106" /note="ssDNA binding site [nucleotide binding]; other site" /db_xref="CDD:72968" misc_feature complement(order(1225758..1225760,1225839..1225841, 1225845..1225847,1225851..1225853)) /locus_tag="Deba_1106" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:72968" gene 1226150..1226941 /locus_tag="Deba_1107" /db_xref="GeneID:9493562" CDS 1226150..1226941 /locus_tag="Deba_1107" /note="COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123:IPR004552; KEGG: sat:SYN_01275 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Q2LQ66 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases" /codon_start=1 /transl_table=11 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase" /protein_id="YP_003807069.1" /db_xref="GI:302342540" /db_xref="GeneID:9493562" /translation="MAASPWLDWRKAARFLWSIWALGLGVGLLLFFSALVLAFSILGL GENFLAHVGRLWARLTVWLCGVPPKVHGQQNLAPGEHYVFACNHSSSVDIPVLQAILP TNFRWIAKVELFRFPIFGPAMRAVGYIPINRSSSREAIRSLQEAAARIAGGASVVIFP EGTRTSDGEVLPFKSGAFTLAIKSGRPVIPVFIHRSFEAMPPKSYIVSPGPVHVYFGA PLATDGLKTGDRDELAEKVRQAVIELQAQARAEHPLPAGAWFVAG" misc_feature 1226318..1226863 /locus_tag="Deba_1107" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989" /db_xref="CDD:153251" misc_feature order(1226411..1226413,1226420..1226422,1226426..1226428, 1226474..1226485,1226633..1226641) /locus_tag="Deba_1107" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153251" gene 1227009..1229339 /locus_tag="Deba_1108" /db_xref="GeneID:9493563" CDS 1227009..1229339 /locus_tag="Deba_1108" /note="COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541:IPR003593; KEGG: sat:SYN_01274 cell division protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: ATPase AAA; SPTR: Q2LQ67 Cell division protein; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family" /codon_start=1 /transl_table=11 /product="cell division protein FtsK/SpoIIIE" /protein_id="YP_003807070.1" /db_xref="GI:302342541" /db_xref="GeneID:9493563" /translation="MTKRAGKSVALEGRREAALSWLRLAVALALLAVAAVLLTALAGY DPADPWRPDEAGAARNWLGPLGAVVAGVLYGGVGLLAWPAALALPLGGWLFWKGRGQV AMLPLCCGGLWALAGAGALLGQSGLTIAIQGQSLAVGGLAGQAAASGLTALAGAGGAW AAGGMALAGGAALIGHATWPLLGQALAWRPTSEPEAAPRTTPRPEPIIAPDKRPEPTP EPTPTPAVEPANAPALEPANAPALEPAPPRPRPQKPAAPAAGPRVVAPAPLEPPKPST EAAPCRSENAAQRFALPSVELLRLPGEQHAQIDHDQLMEKSRLVESKLADYHVAGHVA EVAPGPVVTVFEFKPAPGVKISKVAGLADDLAMNLRAQSIRIVAPIPGKAAIGIEIPS AKRQKVFLRELLDSDHYRQAQSPLTVALGKDILGRPVIEDLCRMPHLLIAGATGAGKS VFINSLVLSILYKSTPDQVRLIMVDPKRIELSTYNDVPHLLHPIITSPKEATAGLRWA VAEMERRYTLLAAHGVRNIGSFNDKLRAEGLAAEPDGRLGGLAPDPERPARLTPLPHV LIIIDELADLMMVSSKDVEGLITRLAQMARASGIHLVLATQRPSVDVITGLIKANFPA RISFQVSSRIDSRTILDQQGAEHLLGAGDMLFLHPSTPGLKRVHGAFVSDGEIEDVVE HWKNQGRPNYDESVVAAAEGDEDAAADGDDDVVDELYQDAVRLVRQSGQASISFVQRR LRVGYNRAARMIEQMEQDGVVGPSDGSRPREVLLRD" misc_feature <1227939..>1228442 /locus_tag="Deba_1108" /note="type VII secretion protein EccCb; Region: T7SS_EccC_b; TIGR03925" /db_xref="CDD:188440" misc_feature 1228206..1228841 /locus_tag="Deba_1108" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1229160..1229336 /locus_tag="Deba_1108" /note="Ftsk gamma domain; Region: Ftsk_gamma; cl09645" /db_xref="CDD:158603" gene 1229443..1230426 /locus_tag="Deba_1109" /db_xref="GeneID:9493564" CDS 1229443..1230426 /locus_tag="Deba_1109" /note="COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR000073:IPR012020; KEGG: dal:Dalk_0422 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: B8FH42 Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_003807071.1" /db_xref="GI:302342542" /db_xref="GeneID:9493564" /translation="MNSPAHAYAAPLLLRGPMIQSILASSRLRVRNGHAMDRGAREVI VDAGGGVRLLGYHSPQPGRSAKGLVILLHGWEGCQDSVYMLRTGRALYDQGYDVFRLN LRDHGESHRLNQGLFLGTLIEESHQGVRAVAGLAQGGPVFLAGFSMGGNFALRMSLRH GRSPIPGLRGVAAISPGVNPEVSTRLIDKITLMRLYFLKKWKRSLRLKQEAFPQVYDF SEVLACRTVMGMTEAMLARYTDYPSTSAYFSGYALMGEALGDLAAPTVIVTAADDPVI PADDFRAMTFNDQTELIIHDHGGHSGFVEGLGLASWYERWLPQWFASLAGK" misc_feature 1229443..1230414 /locus_tag="Deba_1109" /note="Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]; Region: COG0429" /db_xref="CDD:30778" misc_feature 1229590..>1229769 /locus_tag="Deba_1109" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(1230474..1231349) /locus_tag="Deba_1110" /db_xref="GeneID:9493565" CDS complement(1230474..1231349) /locus_tag="Deba_1110" /note="COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR016040:IPR008927:IPR006176:IPR006108:IPR 006180:IPR013328; KEGG: dal:Dalk_2639 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: B8FIU1 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding protein" /protein_id="YP_003807072.1" /db_xref="GI:302342543" /db_xref="GeneID:9493565" /translation="MTIDDVKNICVVGAGNMGHQIATLCAITGYKTTCTDVKPEILQK AEAFVDKYLPGRVAKGKLTEEQAKQARANLTFTSSLEDAAKDADYVIEAVIEVVDLKR RIFADLDRITPKHTILASNSSAIVSSRIADATSRPDKVVNLHFFNPALVMKLVEVVQG PHVSDETTKISMDLCLKLDKVPVHLKKEVNGFLLNRIFFAITKEAQWLLEMGVASYED IDKACVYGAGHPMGPFRLQDLTGIDLAYIMGMENFRRTGDTSELPPPSLCERYFRGEY GEKTGKGWYDYSKKK" misc_feature complement(1230480..1231337) /locus_tag="Deba_1110" /note="3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Region: FadB; COG1250" /db_xref="CDD:31442" misc_feature complement(1230792..1231328) /locus_tag="Deba_1110" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1230489..1230779) /locus_tag="Deba_1110" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" gene complement(1231384..1232877) /locus_tag="Deba_1111" /db_xref="GeneID:9493566" CDS complement(1231384..1232877) /locus_tag="Deba_1111" /note="COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR016102:IPR016040:IPR003781; KEGG: dat:HRM2_21900 hypothetical protein; PFAM: CoA-binding domain protein; SPTR: C0QDM4 Putative uncharacterized protein; PFAM: CoA binding domain" /codon_start=1 /transl_table=11 /product="CoA-binding domain protein" /protein_id="YP_003807073.1" /db_xref="GI:302342544" /db_xref="GeneID:9493566" /translation="MSDQAAQSQIHRLVNPRGVAFFGASNNFVSMGTNMLNSLLVMGF EGPIYPVHRSESVVLGHKAYRSVLDLPEAPDLAVIVLPTKLVAETLEQCGQKGVRQAV ICSGGFREVGPEGAALERQLVDTAEKWGIRFVGPNCLGVVNTHHKLSTMFHSYNGRPG FVGMASQSGSFVTQMFDYLEPLGLGFSTCFSVGNSANVDLVDCLEHLGDDPNTKVVAM YVEALSRGRRFVEVCRRVSQKKPVVAYYVGGTETGGKAGLSHTGSLAGPDALYDGVFR QCGVVRAQSIEELFDFCAVLGQCPPPRGDRVVIQTHSGGPGAVCADTCGRVGLKLPDL APTTVQALAPYIPVTGNVNNPVDLTFSRSPMDYLKYIPEILLADENTDALLMYFLFAK GRMISQQVNAGLSPEEAQREVENSFVEQSQAIVEAVRQSGKPFVGFSFRIQDEAFVQM VRRMGLPIISSPERAARAMAALVRRERMRKKIAASIAAETETMAAAN" misc_feature complement(1231492..1232850) /locus_tag="Deba_1111" /note="acetyl coenzyme A synthetase (ADP forming), alpha domain; Region: AcCoA-syn-alpha; TIGR02717" /db_xref="CDD:131764" misc_feature complement(1232557..1232838) /locus_tag="Deba_1111" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(1232881..1233567) /locus_tag="Deba_1112" /db_xref="GeneID:9493567" CDS complement(1232881..1233567) /locus_tag="Deba_1112" /note="COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR013650:IPR011761; KEGG: dol:Dole_0137 ATP-grasp domain-containing protein; PFAM: ATP-grasp domain protein; SPTR: A8ZSN4 ATP-grasp domain protein; PFAM: ATP-grasp domain" /codon_start=1 /transl_table=11 /product="ATP-grasp domain protein" /protein_id="YP_003807074.1" /db_xref="GI:302342545" /db_xref="GeneID:9493567" /translation="MKEVELLIKSASDSGQAALSEYDSKKVLAAYGVPVTREILAGSA DEAIAAAQVLGGPVALKACSAKLLHKTERGAVRLGLRQPADIARAFAELMALEPDLDG VLVQEMVSGARELVMGLKRDAQFGPCVMLGLGGVLTEILADTAFRAAPIDAIEARDMC DQLRGKAMLGAFRGQAPADMDALCAALVGLGRIGLDLPAVSEIDVNPLIIDANGRLAA VDALVVLGRA" misc_feature complement(1232938..1233513) /locus_tag="Deba_1112" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene 1233888..1234667 /locus_tag="Deba_1113" /db_xref="GeneID:9493568" CDS 1233888..1234667 /locus_tag="Deba_1113" /note="COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198:IPR016040; KEGG: dal:Dalk_2964 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: B8FL19 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_003807075.1" /db_xref="GI:302342546" /db_xref="GeneID:9493568" /translation="MRGKAGVITGAASGIGRAAAVLFAQNGAKLALADMNQAELEQTT RLVEEAGGEVFCQVVDVAEEEQVRALIDEAAKRFGQLDFICNNAGITGKMATLETEDP ADWLRVYAVNVLGAMFGCKHAAPHLIARGGGAIVNTSSVAGVRAGAGGNAYSASKAAL INFTRTAACDLGQFNVRVNAVCPGLIETGMTKPVFDYARQAGKEAKLGSRCELRRYGR PEEIATAMLFLASDESSYITGQALPVDGGNTCSLNLPGMKY" misc_feature 1233888..1234628 /locus_tag="Deba_1113" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1233906..1234622 /locus_tag="Deba_1113" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature order(1233915..1233917,1233921..1233932,1233987..1233995, 1234059..1234061,1234065..1234070,1234146..1234154, 1234218..1234220,1234299..1234307,1234344..1234346, 1234356..1234358,1234434..1234445,1234449..1234454) /locus_tag="Deba_1113" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature order(1234221..1234223,1234305..1234307,1234344..1234346, 1234356..1234358) /locus_tag="Deba_1113" /note="active site" /db_xref="CDD:187544" gene 1234688..1235470 /locus_tag="Deba_1114" /db_xref="GeneID:9493569" CDS 1234688..1235470 /locus_tag="Deba_1114" /note="COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: chy:CHY_1739 3-hydroxybutyryl-CoA dehydratase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: Q3ABC5 Putative 3-hydroxybutyryl-CoA dehydratase; PFAM: enoyl-CoA hydratase/isomerase family" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_003807076.1" /db_xref="GI:302342547" /db_xref="GeneID:9493569" /translation="MAYEFEKIKATQDGAVLVATIDSPPANALGQGVLRDLSALLDQA QADEAVRVIVLCGQGPKLFSAGADISEFAGLQAGVVPKYNGNEIFSRIETFPKVVIAA MQGAAFGGGLELCLCCHLRVMSEKAICGLPEVKLGFMPGWGGTQRLPRLIGKTKAMEL ILTGDFISANQALALGLVCALAPAEETVAHAVKLAQKLAAGAPLAQREIIKAIHNGLQ TTVADGVKNVEGAGVATLLGSQDFKEGAKAFLEKRKAQFVGR" misc_feature 1234703..1235467 /locus_tag="Deba_1114" /note="enoyl-CoA hydratase; Provisional; Region: PRK07658" /db_xref="CDD:181070" misc_feature 1234709..1235281 /locus_tag="Deba_1114" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1234769..1234771,1234868..1234870,1234880..1234894, 1235003..1235005,1235009..1235017,1235081..1235086, 1235093..1235095) /locus_tag="Deba_1114" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1234886..1234888,1235015..1235017) /locus_tag="Deba_1114" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1234955..1234957,1234979..1234981,1235042..1235053, 1235087..1235098,1235114..1235116,1235120..1235128, 1235132..1235137,1235150..1235155,1235159..1235164, 1235168..1235173,1235180..1235182,1235213..1235215, 1235222..1235224,1235267..1235269,1235276..1235281) /locus_tag="Deba_1114" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1235489..1235956 /locus_tag="Deba_1115" /db_xref="GeneID:9493570" CDS 1235489..1235956 /locus_tag="Deba_1115" /EC_number="4.2.1.17" /note="COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: gsu:GSU0237 MaoC-like domain-containing protein; PFAM: MaoC domain protein dehydratase; PRIAM: enoyl-CoA hydratase; SPTR: Q74GK9 MaoC-like domain protein; PFAM: MaoC like domain" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase" /protein_id="YP_003807077.1" /db_xref="GI:302342548" /db_xref="GeneID:9493570" /translation="MSVQAALKAQQAKLGQVTHVGPWLEITQERIDKFAEATGDYQWI HVDPERARRESPMGATIAHGFLTLSLIPFLTGLGEGRAADCEGMKMALNYGLNRVRFV SPVPVGSRLRATTKLIGVEEVAGGLQITNEVTIEIDGGKKPACVAESLSRIYF" misc_feature 1235537..1235953 /locus_tag="Deba_1115" /note="NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their...; Region: NodN; cd03450" /db_xref="CDD:48045" misc_feature order(1235591..1235593,1235606..1235608,1235612..1235614, 1235621..1235623,1235669..1235671,1235678..1235683) /locus_tag="Deba_1115" /note="putative active site [active]" /db_xref="CDD:48045" misc_feature order(1235606..1235608,1235612..1235614,1235621..1235623, 1235678..1235680) /locus_tag="Deba_1115" /note="putative catalytic site [active]" /db_xref="CDD:48045" gene 1236058..1237242 /locus_tag="Deba_1116" /db_xref="GeneID:9493571" CDS 1236058..1237242 /locus_tag="Deba_1116" /note="COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: dsy:DSY3794 hypothetical protein; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: Q24QV9 Putative uncharacterized protein; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="L-carnitine dehydratase/bile acid-inducible protein F" /protein_id="YP_003807078.1" /db_xref="GI:302342549" /db_xref="GeneID:9493571" /translation="MGGPLDGLRILDFSSLLPGPYASMFLADMGAGVLRVVSKTRPDM ADMVPPLLPGSNISASAAFLGRGKRAISLNLKHPRALAVVQRLIERYDIILEQFRPGV MDKLGLGYQALCRLQPRLIYCSLTGYGQTGPLKDRAGHDVNYLARSGLLSYSGRRDGG PTLMGMQIADVAAGSMNAVVGILAAVIARQASGQGQHVDVSMTDGAMAFNAMAAAGAL AADAEPGREGTMLNGGSLYDIYETSDGGHLSVGSLEPKFFEALCLAIDRPDCVAGWVA PPDLPRVKEQIRQIFKGKTMAQWVEIFEKVDACVEPVLGLREAFDQPLAQARQWVVEV PAPDGRTLRQPGPPIKFSATPARPGQAWLGGPTDNAAVLAQAGFAPEEIAELSAEPGL FE" misc_feature 1236058..1237227 /locus_tag="Deba_1116" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1237337..1238041 /locus_tag="Deba_1117" /db_xref="GeneID:9493572" CDS 1237337..1238041 /locus_tag="Deba_1117" /note="COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: dvl:Dvul_1419 outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; SPTR: C6MQM6 Outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA; TIGRFAM: periplasmic chaperone LolA" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein carrier protein LolA" /protein_id="YP_003807079.1" /db_xref="GI:302342550" /db_xref="GeneID:9493572" /translation="MKKLIIAFVALAALCCPSAWAADDQAIQQRLSQRYGQVNGLAAD FTRESQYVAAAGQAARKVRSVGQLVWVRPLNLRLTESVPKPQEVVSDGRTMWLIQPDR QRVTIYEVGDNTQALRGLLAALSGLSALDDSFKVVEATAEEQGPAGSLTVAMEPKEPR ADMGRLVVWFAEGNLDLLGLRIVSMVGNINQYGFSNQRYNPDTSAGHFAYQPPEGWRV FDQRPVQRRMEKGRSE" misc_feature 1237337..1238002 /locus_tag="Deba_1117" /note="Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl01065" /db_xref="CDD:194024" misc_feature 1237355..1237999 /locus_tag="Deba_1117" /note="lipoprotein chaperone; Reviewed; Region: lolA; PRK00031" /db_xref="CDD:178807" gene complement(1238046..1238729) /locus_tag="Deba_1118" /db_xref="GeneID:9493573" CDS complement(1238046..1238729) /locus_tag="Deba_1118" /note="KEGG: pau:PA14_64420 hypothetical protein; SPTR: A8MSS4 Putative uncharacterized protein OGG1 (Fragment)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807080.1" /db_xref="GI:302342551" /db_xref="GeneID:9493573" /translation="MNAYHKIVPLPIAPGQGELPRRTWWRAPETAHGVCMRANARLRP ALARAQDQPWPMLAAVCRAASAALLLHPRLNFYTFWGRLRWAGLPPKVCAFLENADTS CTGVVIQAAHEMSQGRVIELLRAGRGQDEAPPSLMARLWPEADYVLRRLSGVYPAQYV RHNAPLFVSMLWLAGVDDLCYTPAHSMALYPGMPVDGLMPLTLCYNHQLANARPVGRL LRTIADLLE" gene 1238762..1239442 /locus_tag="Deba_1119" /db_xref="GeneID:9493574" CDS 1238762..1239442 /locus_tag="Deba_1119" /note="KEGG: nml:Namu_3183 glycosyl transferase family 2; SPTR: C8XC11 glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807081.1" /db_xref="GI:302342552" /db_xref="GeneID:9493574" /translation="MDTTKIIGQARSMAQRFSGGLKRQLRLPVFDFDDFLDVYDLPAN GLGLSQYRDHCRRTWYLMQFLRQAGVEPQAVAVGGQAFARWAQATGQDLSDGHGRAHA VGDFVNDPAHAPSQCQHVSPMASLAVGSALATISLLGESPDQPEVVGVALHLRDGQVL EVFNVLTCDHTPEQAWGMVSGFLDGRKPRRVFQDQTVRRPEFCPDCGELLCNVASSRD VEQALGPA" gene 1239560..1240525 /locus_tag="Deba_1120" /db_xref="GeneID:9493575" CDS 1239560..1240525 /locus_tag="Deba_1120" /note="InterProIPR016024:IPR004155:IPR000357:IPR011989:IPR 000225; KEGG: mba:Mbar_A1826 hypothetical protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SPTR: A0ZHQ4 Putative uncharacterized protein; PFAM: PBS lyase HEAT-like repeat" /codon_start=1 /transl_table=11 /product="PBS lyase HEAT domain protein repeat-containing protein" /protein_id="YP_003807082.1" /db_xref="GI:302342553" /db_xref="GeneID:9493575" /translation="MADNLEKIVLDALDAEEPNILRAACLLSGSMGLKEAERGLIKAL GHKAWQIQAEAAKSLGLLLLPGALPFLRRLLKASDADLRQKVLAAAAGAKEPPSEAGD ETHPEVRKAAAVAISRIQPGVAQEALRAALASGQANLMGAAMSGLANLEVTDIAQNVI ELTANEDVAVRRAAAACLGRLREIKAVPRLVQLLQDSDAGVRKEAVIALNHIKSRDAL APLAACLDDNDAEVRRVTAIALGNTRLRLNEIVQPLIHALRDRDASVRQAALMALSNI KAPEALEAAASLLADTHDEVRKQAGATTVVLAFAKERPEYDPGHI" misc_feature <1239863..1240381 /locus_tag="Deba_1120" /note="putative oxidoreductase/HEAT repeat-containing protein; Provisional; Region: PRK13800" /db_xref="CDD:184334" gene 1240906..1242981 /locus_tag="Deba_1121" /db_xref="GeneID:9493576" CDS 1240906..1242981 /locus_tag="Deba_1121" /note="COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0342 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C1SI40 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003807083.1" /db_xref="GI:302342554" /db_xref="GeneID:9493576" /translation="MVALMLWAAVGGGLAVAAEDAAAPADQQAHELEAVMVTADKTTS KDVNDLPMSVSVIDEEELGDYQIDQVDQLTNFLPNVNYLKTGSHWTEVSFRGMGAMSN MVYTSYSSLDGVSLPYVGSDAFFDVQRIEVVRGGVGSLFGRNTHAGHLNIITNDPGDT LNAHATARYGSFNTYEVDGAVGGPVNEKVGFRLAARYSGTDGWIENDYYNRDDTNDGS QASGRAKVVFSPSDACDATFSLNLDRFDSANDNYANVDGGGTIHTLNNLLGHDNGSMV LPSLDLRKRFGALELTSITAFVDTKYDMLLDQDMSPLDAIILDYQEDYQTFSEELRIA TTDQNAVWQGMAGLYLMHQKGTYDMDFQFGSQGAYFGSIPGMYQKSDSELTTDNAALF GQVQYRPWEKVEFTAALRMDWERVKVDWNTAYGLNGTTYGTDKYDADQDWLALLPRIS AAYLLATDQRIYATIYQGYRSGAYNVLSTSRDVIEHSVDPEYTTTYEAGYKAALFDKR LSLRAAIFYVDWRDIQLSVVKDGLVVLQNAGKAHSYGLETEVGWQVLPGLNILASLGL ISAEFDEYNGHSSGENLSGNDIPNTPNYKFALGGVYRHASGLFAQASASWIGKKYLEE TNGYQQDAYVLIDAKTGYEAERWAAYIWGQNLADELYVVRALDFYGMGYYGRTGQPLA VGVELQWRF" misc_feature 1241050..1242978 /locus_tag="Deba_1121" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:162535" misc_feature 1241062..1242978 /locus_tag="Deba_1121" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1241062..1241091,1241119..1241148,1241179..1241196, 1241215..1241220,1241236..1241253,1241284..1241307, 1241341..1241367) /locus_tag="Deba_1121" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(1241833..1241835,1241914..1241916) /locus_tag="Deba_1121" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1243024..1243680 /locus_tag="Deba_1122" /db_xref="GeneID:9493577" CDS 1243024..1243680 /locus_tag="Deba_1122" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_5103 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: D1JGD8 Putative uncharacterized protein; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003807084.1" /db_xref="GI:302342555" /db_xref="GeneID:9493577" /translation="MTSILSRFIDSTAKRPQGKWARQYYGEPKSHMKAFAQTMEALAP RPDDAHLEIGCGGGYFLGMIQPKVARVAAIDHSPEMVEVARRANHDAVAAGLAEIVQG DAERLPWPDDSFTCSANTSMWFFLEHPERVLAELRRVLKPGGRLVITTIRRSWFNRLV WALYGLRLYSNRQMARMLGDSGFCEIEVVSKGLMGQIVTARKPAASVQGQDKANHARP " misc_feature 1243174..1243470 /locus_tag="Deba_1122" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(1243180..1243200,1243246..1243251,1243327..1243335, 1243378..1243380) /locus_tag="Deba_1122" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1243667..1244920 /locus_tag="Deba_1123" /db_xref="GeneID:9493578" CDS 1243667..1244920 /locus_tag="Deba_1123" /note="InterPro IPR016196:IPR011701; KEGG: amr:AM1_A0171 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZKH8 Major facilitator superfamily transporter, PFAM: Major Facilitator Superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_003807085.1" /db_xref="GI:302342556" /db_xref="GeneID:9493578" /translation="MRAHRKYILLSGLYIAQTLPGHFFGNVLPVIMRGQGASLASIGF LQIIALPWLLKFLWAPLVDRATAPGGRYARVIVALQLMFCLCTAALALVGLERQLPLA LGLMALSYVFAATQDIATDALAVRLLNDEERGPGNAAQTGGNMLGALLGSGGALIAYQ YLGWAGVMLAMALALLLPLAPLGWLASAIPARPGAGGEAGATGWSGFFRQRGAGRWTL MMLISYGGSMACVMITKPLMVDLGFSAARIGLLTGVHGVGVGLLGAVAAGWLIPRLGR LAVLRGGCLLGAVAAVAMLPLAWGQTDTAYLLAAIGLGGLGFAATMTAINTIAMDFTR PGHEGADYSLQIAISMIGGGVLMGSSGWLAQEMGYDGVFSLCGALCLAAAGLVSPLCG RQLARRSAGGVGLLSRAGRGDIGRA" misc_feature 1243721..>1244089 /locus_tag="Deba_1123" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cl11420" /db_xref="CDD:196224" gene complement(1244883..1245779) /locus_tag="Deba_1124" /db_xref="GeneID:9493579" CDS complement(1244883..1245779) /locus_tag="Deba_1124" /note="COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR009057:IPR000005:IPR018062:IPR012287:IPR 018060; KEGG: cyn:Cyan7425_2438 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: B8HXA5 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_003807086.1" /db_xref="GI:302342557" /db_xref="GeneID:9493579" /translation="MAAAALTHVPLREGLELIIQDFRPTGEMTLRFSREASALHFGYM LKGRVHTVIDQGRRRFFNSPNLAGRGGVLFLPHTISQGHYQAGDHVLGLSVDVSPRLF GQLAEDISPALPDQLRDLVKGARSSNGFVLPATITAPMNAVLRDILAIRRDSPCAGLF TEAKVLELLGLQMEQFIESHRHAGPARAMDRADRAGLRRVLEMLGANLHDQPSLLDMA REAGMSHGKLNICFKQAYGVTVFEWLRQARLDRARELLGAGCSIAEAALLAGFCDQSH LNRCFKRRFGLTPGQYLRARRG" misc_feature complement(1244889..1245254) /locus_tag="Deba_1124" /note="AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:32389" misc_feature complement(1244898..>1244999) /locus_tag="Deba_1124" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 1246074..1247060 /locus_tag="Deba_1125" /db_xref="GeneID:9493580" CDS 1246074..1247060 /locus_tag="Deba_1125" /note="COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR020449:IPR009057:IPR000005:IPR018060; KEGG: dsa:Desal_2087 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C6BVU4 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_003807087.1" /db_xref="GI:302342558" /db_xref="GeneID:9493580" /translation="MGGEAKGLVRRGEESSLAGLEESGVPAGVEGQLMEVKPGLRVAA VDCRPQDDLRIEFETGEAPLEFSYYLAGRARYLIDHERGEHAFVSEAGLNTVAAFPRS RAVMEIPAGVNARMVAIHIEAHVIADHLAERPNAVVPELAHAAENGVFPYCFRPSTMP PSMAIVANQILSCPYHGAVRRLFYESKTLELMALQLSQLLASHRPTAHAPLNRQESGR IQAARNILLDDLQNPPSLFQLAGAVGMTHTKLNKGFRDVFGTTVFDYLRRQRLEQSRL MIDADEMNMAEIAYATGFSSPSHFAKAFLAYFGVQPSAYLKEAKGRRGVRPR" misc_feature 1246770..1247021 /locus_tag="Deba_1125" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature 1246911..1247024 /locus_tag="Deba_1125" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 1247237..1248292 /locus_tag="Deba_1126" /db_xref="GeneID:9493581" CDS 1247237..1248292 /locus_tag="Deba_1126" /note="InterPro IPR013217; KEGG: dae:Dtox_2658 O-methyltransferase family 2; PFAM: methyltransferase type 12; SPTR: D1JGE4 Putative uncharacterized protein; PFAM: O-methyltransferase" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_003807088.1" /db_xref="GI:302342559" /db_xref="GeneID:9493581" /translation="MKHTPEVALSYGPLHQLAMGPLKAALLNCAIKLKVFDLLSQARA AGEVAAALGLHPENTRRFLDALTTIDLLRKQGATYCNQPIAQAFLVSGSLSSVAALLL QTQNAGLNPLDKLERLLTHGPDADGQVMDFADEKIWTKEVQSSAGWVFGGVGPLVAEM VAGLPGFASFEKMLDMGCGHGAFTLYILEKNPKLHGVLLDRPAVLAAAAAFVDAYQAG DRVSYRPGDYLAEGIGEGYDLVFASATLNFAIGNLPALLGKVLDALKPGGWFVSFQDG MTNQQTKPETMLGAVIPSMMMGHDYCFPQGMIAKAAIDVGFQSTRSRTVDTPIGAMDI DMCQKGDRGCPPETKES" misc_feature 1247750..1248049 /locus_tag="Deba_1126" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(1247762..1247782,1247834..1247839,1247912..1247920, 1247963..1247965) /locus_tag="Deba_1126" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1248295..1250394 /locus_tag="Deba_1127" /db_xref="GeneID:9493582" CDS 1248295..1250394 /locus_tag="Deba_1127" /note="COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q311J9 Receptor-mostly Fe transport; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003807089.1" /db_xref="GI:302342560" /db_xref="GeneID:9493582" /translation="MSISSVLGSAFGLLAIMASAIAWAGPAMAQEAAMDLEPVVVTAE KRQTTLQDVPASISVFSEADIKDARIQTIQDLSRLTPNMYIANWGIRGTSYVFVRGVG SINNEPAIGYYVDDVGYMDARAFDANLFDIERIEVLRGPQGALYGRNSLAGVINIITK KPDNQTRAGAELTAGNYNNYQAGAHVAAPLVEDKLFLRMAGYFETRDGYTENDFLDQD VDHHQSFNGRAQMRWTPSDKLDISANIEGESVDDGAFPLGRLADLQRNPHHVAYDHEG KYKRDAFGPSLRVVYDAPWFQLTSITAYRDFDDSAANDQDFTIYPLITAYEDIADRQF TQELRFASPESDSALKWLVGLYGFNKDKTHHLNLNFAPDLLLPGMSVDRDTDSDLTTN GMAVFGQTTYTLFKKLDLTVGLRYDYENNDIHHVLSMSSGEMNLGSNKVDASENNGAW LPKFQVAYHWTPRLMTYAGVARGYRSGGFNTAYADESDIRFDPEYSWNYEVGLKTAWF ENRLIVNAALFYIDLQDQQVVQLLPSADTAIRNAGQSRSMGMELELRALLCQGLTLDA GFGYTDAEYTDYRDPLAGADYSGNKAVLAPEYTYNLALEYRRGISAAWDAFLRAELNG VGPFYWNDANTLKQDPYQLVNLSLGFEREAFDLVLWARNLFDENYEAVAFEFPGSDPV GQSGDPLTFGATVRVRF" misc_feature 1248448..1250391 /locus_tag="Deba_1127" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:162535" misc_feature 1248460..1250391 /locus_tag="Deba_1127" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1248460..1248489,1248517..1248546,1248580..1248597, 1248628..1248645,1248688..1248711,1248745..1248771) /locus_tag="Deba_1127" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(1249246..1249248,1249327..1249329) /locus_tag="Deba_1127" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1250615..1250989 /locus_tag="Deba_1128" /db_xref="GeneID:9493583" CDS 1250615..1250989 /locus_tag="Deba_1128" /note="KEGG: ote:Oter_2307 hypothetical protein; SPTR: B1ZQI0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807090.1" /db_xref="GI:302342561" /db_xref="GeneID:9493583" /translation="MGKAAVVCFAAMLSSYGCAVSAPRSGREAGPFLRGGEAAQAAQW LPLAVVIFVAGVALGVALVVWVRRWRLRRALRAGQGRAPAGELQNLQLSLMLLEKAAQ GIRSRPAEKDRAAAAPPRLKIL" gene complement(1251006..1252163) /locus_tag="Deba_1129" /db_xref="GeneID:9493584" CDS complement(1251006..1252163) /locus_tag="Deba_1129" /note="COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterProIPR007197:IPR010723:IPR013785:IPR004559:IPR 006638; KEGG: aeh:Mlg_2448 coproporphyrinogen III oxidase, anaerobic; PFAM: radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q0A5U9 Coproporphyrinogen III oxidase, anaerobic; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase" /codon_start=1 /transl_table=11 /product="oxygen-independent coproporphyrinogen III oxidase" /protein_id="YP_003807091.1" /db_xref="GI:302342562" /db_xref="GeneID:9493584" /translation="MRPAPPEPAAGLGLYVHLPFCPGRCPYCDFFAQPFDAAAAQALA RAMLDHLPAVAEMAEGRRLATVYVGGGTPSMWPVRFLGGLLEAVERTIGLEANPEISL EANPGTLGPAKLRLIAACGVNRLSLGAQSFQPALLQALGRRHGPEQTIRVVEQARRAG LKNLSVDLIYGLPGQDAALAVADVEAAIALETDHLSLYELTLGPQTPFGRRYVKGRPP LPDDDALAAMEHALLKRLAATPLQRYEVSNFARPGRQCRHNQDTWRGHDYLALGPGAH GHLAGRRFAFHADVGRYVSEVAAGRQPLAFEEALTAQQRALELFMLGLRTVEGVDLAA VARLLGADPTGRYGPALAEVVKRGWATAHGKRLRPTPAGLAMADAAAALFA" misc_feature complement(1251051..1252121) /locus_tag="Deba_1129" /note="coproporphyrinogen III oxidase; Provisional; Region: PRK07379" /db_xref="CDD:180953" misc_feature complement(<1251639..1252103) /locus_tag="Deba_1129" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(1251657..1251659,1251780..1251782, 1251849..1251857,1251948..1251953,1251957..1251959, 1252077..1252085,1252089..1252091,1252095..1252097, 1252101..1252103)) /locus_tag="Deba_1129" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature complement(1251051..1251377) /locus_tag="Deba_1129" /note="HemN C-terminal region; Region: HemN_C; pfam06969" /db_xref="CDD:191656" gene complement(1252144..1253547) /locus_tag="Deba_1130" /db_xref="GeneID:9493585" CDS complement(1252144..1253547) /locus_tag="Deba_1130" /note="KEGG: GK21128 gene product from transcript GK21128-RA; SPTR: B4N7J8 GK21128" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807092.1" /db_xref="GI:302342563" /db_xref="GeneID:9493585" /translation="MEMAGPWHGQTRLEAATEALGRELAALPLTAEAAVWAAGPDDAA QLIAPATAQALKRARLVKPPAHGRPDLALAMRRALAWAAGGRPGAVVLICSGQAGGLD QAILAGDPPGADGPFTHVVAMGPGKALAPALMRVTLLGGGKLLAVEAPNRARLVLHRA AQAALSPASLLAVVHDAANRPIELTYKIMHPGGGEKFGRPALANRPAQLPPGSYALVW PKDSAIGPGQPPQIARVASRGQTIVRAGGTGRLTLEAKGENGQDLPWLVNVTSAPGGR LLATNQALPVTIQAAAGEMIIQVIKPPTSWRADLAAGQAMTLTLGPWGRLRVNLPGPD GPWRAPLTAIGPAQAPRRWAGRTQSPLPLPPGDYEVIAQVIPPLRAKAATPPGGERIL ELPAVGGLLVFFEPGREPRPYAVHDTEGRNLGRGHTGQTIALQPGRYEIVMAHGGRAN VAITARQLTRIDAPSAP" gene 1253823..1254953 /locus_tag="Deba_1131" /db_xref="GeneID:9493586" CDS 1253823..1254953 /locus_tag="Deba_1131" /note="COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR010994:IPR003488; KEGG: rmr:Rmar_1985 DNA protecting protein DprA; PFAM: SMF family protein; SPTR: D0MKF5 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA" /codon_start=1 /transl_table=11 /product="DNA protecting protein DprA" /protein_id="YP_003807093.1" /db_xref="GI:302342564" /db_xref="GeneID:9493586" /translation="MPMDLDNAALSREELLDWLGLRLIPGVGGVTFARLLDAFGRPGR ALGAPLEALSAVPGLRRTLAEAISRRAWSEEPSLQLERLAEVGGRVITLADPEYPPLL ANAFAPPPLLFVRGDLGPCREGGVAVVGSRNMTTYGQRMAAELGRDLARAGLSVISGL ARGVDGQAHRAALEAGGHTVGVLGCGLDVAYPPEHAGLIERMAGQGAVVSEFPMGSPP AQANFPVRNRIIAGLSRAVVVVEAGLRSGALITARHALEENREVFAVPGLAGLASSAG CNELLRRNAAQLLESAQDILAPGALGRAPSPARPRALLSQDDGLLPEERALLALVGPE PTHVDQLIRRSGLDAQSVAHHLLNLELAERVRQLAGKRYELA" misc_feature 1253850..1254950 /locus_tag="Deba_1131" /note="Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]; Region: Smf; COG0758" /db_xref="CDD:31101" misc_feature 1254066..1254695 /locus_tag="Deba_1131" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene 1254956..1257376 /locus_tag="Deba_1132" /db_xref="GeneID:9493587" CDS 1254956..1257376 /locus_tag="Deba_1132" /EC_number="5.99.1.2" /note="COGs: COG0550 Topoisomerase IA; InterProIPR000380:IPR006171:IPR013497:IPR013498:IPR 013824:IPR013826:IPR005733:IPR006154:IPR003601:IPR003602; KEGG: dsa:Desal_3808 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; SPTR: C6BUQ9 DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial" /codon_start=1 /transl_table=11 /product="DNA topoisomerase I" /protein_id="YP_003807094.1" /db_xref="GI:302342565" /db_xref="GeneID:9493587" /translation="MPKNLLIVESPAKARTIGKYLGPDFIVKASVGHIVDLPPSELGV DLENGFQPHYRVIKGKDKVIKELRAAAAKAGEIFLAPDPDREGEAIAMHIAQQLGRPL ESYHRVLFHELTKSAIAKAVAAPAKIDVDRYNSQQARRVLDRLVGYQISPLLWDKVKR GLSAGRVQSVSLRLVVERERAIQAFEPQEYWTVTAMLQGQQPPPFAARLARLAGKKFD PKNEKEAMAGVTAIQGQRFVVEKLTKRQRKQQPAPPFITSTLQQEAYRKLGFAPKYTM GLAQALYEGKQTSEGQMGLITYMRTDSTRLAAEAVATVRALIAARYGQEYLPAKPNAY KSKANAQEAHEAIRPTNAALTPELLEAYLSRDELRLYQLIWNRFVACQMAPAVYDQTQ AEIVAGQGLLRASGQVLRFRGFTAVYVEDRDEHGGDEARASAEAKDHDQALPPLPPLD EGQELALQGVEPKQHFTQPPPRFTEASLVRELEEQGIGRPSTYAAILSTIQEKDYVSK DQKRRLIPTELGYLVNDLLVECFPQIMEVGFTAQLEGLLDQVEEGRQDWRGLLADFYG PFQQALGAAKTHMRQIKGKGVETDVKCPLCGKPMAIRLGRNGEFLACSGYPECKSTSD FSRDEKGAIVLQEAAPDPGVACDKCGAAMVVKKGRFGPFLACSAYPQCKNIMALGADG KPVAKPQPEATGEKCPKCGGELVIKPTRSGGRFISCANYPKCNYSKGLSTGVKCPKCG GELVEKRSRRGKPFYGCDNFPTCDYASWDRPIDEPCPQCGHPFLVEKVGKKETVVRCP QPDCNFKK" misc_feature 1254956..1257019 /locus_tag="Deba_1132" /note="DNA topoisomerase I; Validated; Region: PRK06599" /db_xref="CDD:180637" misc_feature 1254962..1255303 /locus_tag="Deba_1132" /note="TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in...; Region: TOPRIM_TopoIA_TopoI; cd03363" /db_xref="CDD:173783" misc_feature order(1254980..1254985,1254992..1254994,1255199..1255201, 1255205..1255207,1255211..1255213) /locus_tag="Deba_1132" /note="active site" /db_xref="CDD:173783" misc_feature order(1255001..1255003,1255202..1255204,1255208..1255210, 1255229..1255234,1255238..1255243) /locus_tag="Deba_1132" /note="interdomain interaction site; other site" /db_xref="CDD:173783" misc_feature order(1255199..1255201,1255205..1255207) /locus_tag="Deba_1132" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173783" misc_feature 1255208..1255210 /locus_tag="Deba_1132" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173783" misc_feature 1255349..1256665 /locus_tag="Deba_1132" /note="DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded...; Region: TOP1Ac; cd00186" /db_xref="CDD:73184" misc_feature order(1255349..1255426,1255439..1255501) /locus_tag="Deba_1132" /note="domain I; other site" /db_xref="CDD:73184" misc_feature order(1255370..1255375,1255382..1255384,1255394..1255396, 1255406..1255408,1255793..1255795,1255805..1255807, 1255853..1255855,1256426..1256431,1256438..1256443, 1256447..1256449,1256459..1256464) /locus_tag="Deba_1132" /note="DNA binding groove [nucleotide binding]" /db_xref="CDD:73184" misc_feature order(1255472..1255474,1255484..1255486,1256537..1256539) /locus_tag="Deba_1132" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73184" misc_feature order(1255514..1255534,1255658..1255705,1256105..1256149, 1256153..1256209,1256327..1256359) /locus_tag="Deba_1132" /note="domain II; other site" /db_xref="CDD:73184" misc_feature order(1255706..1255726,1255730..1255810,1255835..1255921, 1255982..1256008,1256042..1256104) /locus_tag="Deba_1132" /note="domain III; other site" /db_xref="CDD:73184" misc_feature order(1255739..1255741,1255751..1255759,1255985..1255987, 1256060..1256062,1256069..1256071,1256081..1256083, 1256420..1256422,1256426..1256428,1256495..1256497) /locus_tag="Deba_1132" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:73184" misc_feature order(1255847..1255849,1255853..1255855,1255985..1255987) /locus_tag="Deba_1132" /note="catalytic site [active]" /db_xref="CDD:73184" misc_feature order(1256360..1256482,1256495..1256539,1256555..1256665) /locus_tag="Deba_1132" /note="domain IV; other site" /db_xref="CDD:73184" misc_feature 1256723..1256821 /locus_tag="Deba_1132" /note="Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; cl11977" /db_xref="CDD:143760" misc_feature 1256882..1256980 /locus_tag="Deba_1132" /note="Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; cl11977" /db_xref="CDD:143760" misc_feature 1256981..1257364 /locus_tag="Deba_1132" /note="Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]; Region: TopA; COG0551" /db_xref="CDD:30897" misc_feature 1257035..1257145 /locus_tag="Deba_1132" /note="Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; cl11977" /db_xref="CDD:143760" misc_feature 1257152..1257271 /locus_tag="Deba_1132" /note="Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; cl11977" /db_xref="CDD:143760" gene 1257524..1259227 /locus_tag="Deba_1133" /db_xref="GeneID:9493588" CDS 1257524..1259227 /locus_tag="Deba_1133" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: afw:Anae109_1649 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A7HAV7 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003807095.1" /db_xref="GI:302342566" /db_xref="GeneID:9493588" /translation="MNEQKRSQCQERYKNLLPNLADYVEKHARENAAGLALIEHNTGE HISWKDFNKSVNAFAAKLLSIGLRKGDIVATSLPLLKEHVYLMYACHRVGLIIAPLDL RLKTGEIQYCLDKIKPKAYFFLGKTPLADFRPMIQEVMKSSPYVDHWVQFQKEPELVI PGAVGIGQFVADIKWVFIKSLLTGAVKKARAKVGKRDACLIIFTTGSTGSPKPGLICH ENILIQNIGLIVAFDMAEKDRMLVNLPPSHVGCVTEQLDTTIVGGGTCVLLHVFDPAA SLQAIQQHKVTTLGQIPALFNLEWRLPDYAKYDLSSLRFAIYGGQSVPREFLEKLQAM APTIGTGLGLTETAGFCTYTDIGASVDSLAQGIGFDSPLCPIGIRAPMTTDGKAGAEK KPGEIGEICFSGPQVFLGYLGDQANTAKTISIDGVLYTGDLGYYDDKGLHFAGRSKMV IKPKGYQVFPEDVENHIAGKFKGLVTMVAAVGVEHAVFSEGIVVFVEKARADVSLSAK DVMAACEDISAYSRPSHVEVVDPEGIPLNRVAKTDYLNLKAAAKRIIDELRAKGGWDA A" misc_feature 1257575..1259182 /locus_tag="Deba_1133" /note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: CaiC; COG0318" /db_xref="CDD:30666" misc_feature 1257662..1259035 /locus_tag="Deba_1133" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 1259402..1261306 /locus_tag="Deba_1134" /db_xref="GeneID:9493589" CDS 1259402..1261306 /locus_tag="Deba_1134" /note="COGs: COG2217 Cation transport ATPase; InterProIPR001757:IPR001366:IPR008250:IPR005834:IPR 018303:IPR000150:IPR006404:IPR006416; KEGG: dma:DMR_28780 cation translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; SPTR: C4XHJ5 Putative cation translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_003807096.1" /db_xref="GI:302342567" /db_xref="GeneID:9493589" /translation="MIGRYANLGAYRQLVGSGEFLRALGGGALALAGFVVGQHPGPWA RWTALGLIGASIAVNGAPIIWGALQGLWERRVNVDELVSLAIVACLIQGEYLSAAVVS CVMVLGSLIEQATGDSARKAIQSLLDLSPHTALVWADGQFQARPVERVAVGDRLLLRP GDRLAVDAVVKKGASAVDESSMTGEPIPRDKAPGDAVFAGTLNLNGVLEVEATRVGQD STLGRVIKLVSQAEAHKPKAVRLIDRYSRWFTPLILACAGAAWAITGEANRAVTVLIV GCPCALILAAPTAIVATIGRAAKAGVLVKGGQYLEAVATADVVLFDKTGTLTEGKPRV REVIPAAGVDRLEVLRLAACVEQDSSHPLARAVLKAAQYAKIVIDRAEQTCAKIGAGV CGLVQGNLVEVGGACLAGAGAGAPAELSAKLLEIKEQGATPLYVYQDHRPVGLISVAD RVRPAAKGAVEELKALGVGQVGLLSGDHQRSADMVAEAVGLSRAWAEMLPEDKLGVIA QMQAQGRRVIFVGDGVNDAPALAAADVGVAMGAAGADVALETADVALMNDDVAKLPFL MRLSRRMIRIIKWNIAFGLAFNAAAVLASAGGYLSPVLGALAHNVGSVLVVLCSASLA FYERPRAMAR" misc_feature 1259519..1261288 /locus_tag="Deba_1134" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature 1259699..1260337 /locus_tag="Deba_1134" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" gene complement(1261385..1262731) /locus_tag="Deba_1135" /db_xref="GeneID:9493590" CDS complement(1261385..1262731) /locus_tag="Deba_1135" /note="COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504:IPR020568:IPR003593; KEGG: lhk:LHK_02039 RadA; SMART: ATPase AAA; SPTR: C1D983 DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA" /codon_start=1 /transl_table=11 /product="DNA repair protein RadA" /protein_id="YP_003807097.1" /db_xref="GI:302342568" /db_xref="GeneID:9493590" /translation="MAKTRSIYVCQNCGASQPKWMGRCPVCQAWDTLVEERQEPARPA GQTAKPTPLTPLAQAGQHPEPRLPSGLCELDRVLGGGLVAGMAVVVGGEPGIGKSTLM LQLAASLSTAQRRVLYVSAEESAAQVGLRARRLGLGGQGVDLLAETALEPVLEQIARG GHGVVIVDSIQALRSADLAGAPGSVGQVRHCAAELTARAKVGGAPLLMVGHVTKDGAL AGPRVLEHMVDTVLHFESEPAMRLRLLRAVKNRFGATDEVGVFEMGENGLRPVGDPSA ALLAHRPGDAPGSVVCAALGGTRPLLVEVQALVSPSGLATPRRQALGVDQGRLAMLAA VLAIHAGLELAGCDIFVNVAGGVKLIEPAADLAVAAAIASSLRGRPVPQDVVCFGEVG LAGELRAVGRLRARLAEAARHGFGRAVTAGGESPANHSIELVAASRLAQALELLWP" misc_feature complement(1261388..1262731) /locus_tag="Deba_1135" /note="DNA repair protein RadA; Provisional; Region: PRK11823" /db_xref="CDD:183326" misc_feature complement(1261646..1262710) /locus_tag="Deba_1135" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(1262435..1262443,1262453..1262458)) /locus_tag="Deba_1135" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature complement(order(1262225..1262230,1262369..1262374, 1262378..1262380,1262435..1262443,1262453..1262455)) /locus_tag="Deba_1135" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature complement(1262228..1262242) /locus_tag="Deba_1135" /note="Walker B motif; other site" /db_xref="CDD:29986" gene 1262935..1263261 /locus_tag="Deba_1136" /db_xref="GeneID:9493591" CDS 1262935..1263261 /locus_tag="Deba_1136" /note="COGs: COG3118 thioredoxin domain-containing protein; InterProIPR006662:IPR012336:IPR013766:IPR017937:IPR 012335:IPR017936:IPR005746; KEGG: sfu:Sfum_1708 thioredoxin; PFAM: thioredoxin domain; SPTR: A0LIZ3 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin; TIGRFAM: thioredoxin" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="YP_003807098.1" /db_xref="GI:302342569" /db_xref="GeneID:9493591" /translation="MAGNVVQVTDDSFEQEILKSELPTLVDFWASWCGPCRAIAPVVE ELSEDYAGKVKVAKLNVDESPKTPGQYGIRAIPTLIMFKDGKQVDQITGAVSKAHIEE ALKKLL" misc_feature 1262965..1263249 /locus_tag="Deba_1136" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature order(1263031..1263033,1263040..1263042) /locus_tag="Deba_1136" /note="catalytic residues [active]" /db_xref="CDD:48496" gene 1263281..1264201 /locus_tag="Deba_1137" /db_xref="GeneID:9493592" CDS 1263281..1264201 /locus_tag="Deba_1137" /note="COGs: COG0492 thioredoxin reductase; InterPro IPR000103:IPR013027:IPR005982; KEGG: pth:PTH_1417 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A5D2B9 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase" /codon_start=1 /transl_table=11 /product="thioredoxin reductase" /protein_id="YP_003807099.1" /db_xref="GI:302342570" /db_xref="GeneID:9493592" /translation="METRDLVIVGGGPAGLTAGLYAARARLDVVLYERLSPGGQVLST DWVENWPGAVEGVSGFDLADKMRDHALKFGLEIVSREISGLSAEGGRLLLHHHGGQVT AKAVILAMGASPANLGIPGEARLTGKGVSYCGTCDGPFYRDQTVVCFGGGDTAAEEAI FLTRFARKVYLAHRRDQLRAAAVLQERVLANEKIEVLWSHAPVSINGENGVQSVTMRN LKTGEQFDLPCDGAFVFVGTRPSTGFCAGAVELDQQGFIKTFGDQKTSMPGVFAAGDC CGKLLRQIVVAAGEGATAAYAAQRYLEEHE" misc_feature 1263293..1264186 /locus_tag="Deba_1137" /note="thioredoxin-disulfide reductase; Region: TRX_reduct; TIGR01292" /db_xref="CDD:162288" misc_feature 1263293..>1263397 /locus_tag="Deba_1137" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 1263716..1263934 /locus_tag="Deba_1137" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 1264198..1265040 /locus_tag="Deba_1138" /db_xref="GeneID:9493593" CDS 1264198..1265040 /locus_tag="Deba_1138" /note="COGs: COG4105 DNA uptake lipoprotein; InterPro IPR011990:IPR019734:IPR013026:IPR017689; KEGG: dal:Dalk_2404 outer membrane assembly lipoprotein YfiO; SPTR: B8FB11 Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO" /codon_start=1 /transl_table=11 /product="outer membrane assembly lipoprotein YfiO" /protein_id="YP_003807100.1" /db_xref="GI:302342571" /db_xref="GeneID:9493593" /translation="MSKALRLIIAAGMIAALGLVGGCSTVKGWVGNLGFGGGGDGAVE AFDTPAQVLATEAEQAYQEGNYEEAAETFQQLKDRFPYSKFALLADLRLGDAYFKDER YDEAILAYEDFIRLHPKNEGVPYAMYQIGMVYHEQMLTPDRDPTFARKAMEAFQKLMR EYPKNEWSVKAVPRFQESAARAAAHDLAVGKFYYNTGKYPAAIYRFKRVMTQYPDVGL YDEAMSALQRAQADYDEQLAEEAEEYAGLSEEEKKALEDEKRQKEDSSKPFADEGRRE DSNF" misc_feature 1264348..1264689 /locus_tag="Deba_1138" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1264348..1264353,1264357..1264362,1264369..1264374, 1264468..1264473,1264477..1264482,1264489..1264494, 1264579..1264584,1264591..1264596,1264603..1264608) /locus_tag="Deba_1138" /note="binding surface" /db_xref="CDD:29151" misc_feature 1264366..1264722 /locus_tag="Deba_1138" /note="tol-pal system protein YbgF; Region: tol_pal_ybgF; TIGR02795" /db_xref="CDD:188247" misc_feature order(1264366..1264368,1264402..1264404,1264414..1264416, 1264423..1264425,1264477..1264479,1264513..1264515, 1264525..1264527,1264534..1264536,1264588..1264590, 1264648..1264650,1264660..1264662,1264669..1264671) /locus_tag="Deba_1138" /note="TPR motif; other site" /db_xref="CDD:29151" gene 1265112..1265615 /locus_tag="Deba_1139" /db_xref="GeneID:9493594" CDS 1265112..1265615 /locus_tag="Deba_1139" /note="KEGG: dsa:Desal_2444 hypothetical protein; SPTR: C6BXX0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2867)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807101.1" /db_xref="GI:302342572" /db_xref="GeneID:9493594" /translation="MESLHHPVVAELARGADHLDEKAFRGPAGQSDFVRGILFAPPPG WLRALFALRGVLAKILGLRHETTATEAQTPRAMPTEVGQGLDMWTVRAFEPGRLWAAG IADKHLNVVLSVLSQPAGDGLFEHRVLTIVHYNHWTGPLYFNLIRPFHHLVVWRCGRR AAAGLGA" misc_feature 1265136..1265573 /locus_tag="Deba_1139" /note="Protein of unknown function (DUF2867); Region: DUF2867; pfam11066" /db_xref="CDD:151511" gene complement(1265671..1268325) /locus_tag="Deba_1140" /db_xref="GeneID:9493595" CDS complement(1265671..1268325) /locus_tag="Deba_1140" /note="COGs: COG0013 Alanyl-tRNA synthetase; InterProIPR018164:IPR018162:IPR018163:IPR012947:IPR 003156:IPR019775:IPR018165:IPR002318; KEGG: sfu:Sfum_2527 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; SPTR: A0LLA3 Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="alanyl-tRNA synthetase" /protein_id="YP_003807102.1" /db_xref="GI:302342573" /db_xref="GeneID:9493595" /translation="MALSGNELRGKFLAYFASKGHQVVASSPLAPKDDPSLLFTNAGM VQFKQVFLGQEQRPYTRAATSQKCFRASGKHNDLENVGRTPRHHTFFEMLGNFSFGDY FKQDAVTFAWELLTVGFGLDPEKLWVSVHHSDDEAAELWQSEVGVRPERIVRLGDKDN FWSMGDTGPCGPCSEIHIDMGPEMGCGRPDCAVGCDCNRYLELWNLVFMQYNRDASGQ TTPLPKPSIDTGMGLERIAGVVQGVRSNYDSDLFTPIIERACQITQTAYGQSDQADIS LRVIADHARACAFLVADGILPSNEGRGYVLRRILRRAARHGRKLGAQKPFLHQVAMKV IDEMMGAYPALGDARAFVDKVVTSEEERFNETLDTGLKLLAEAIEEAKAKGQTALPGE VAFKLYDTYGFPVDLTRTICEEEALGVDEPGFEAAMGQQKTRSRASWKGSGEEGLSGP LAELRAKGFKTAFTGYDGLEGQGQVVALIVDGQMVERVGAGQKALLVCDQTPFYGESG GQAGDSGRAEGPAGKAVVSTASKPGGDMVAHEITVSEGYLAVGERLNLTVDHGPRGET ASNHTATHLLHAALRQVLGDHVKQAGSMVSPQRLRFDFSHFEAMTPQQMGQVEAMVNE GVLANIAVTVTEMPAEEALGSGAMALFGEKYGDTVRVVEIPGLSKELCGGTHVKRTGD IGLFKLVAESSVAAGVRRVEALTGRAALAAVRAMEDELHKAAGLLKARPTELAERVAK LMATLKEREREVEQLKAKLAGGGGGRDLLAGVVNHGDARVLVQKVEVDSAKALRALSD EIIERLGSGVLVLGAAAEGKAFLLARVSKDLQGRFHAGNIVKELAPLVGGGGGGRPDM AQAGGQNPDALDQAMERASAMLAEQAKA" misc_feature complement(1265680..1268319) /locus_tag="Deba_1140" /note="alanyl-tRNA synthetase; Reviewed; Region: alaS; PRK00252" /db_xref="CDD:178947" misc_feature complement(1267597..1268310) /locus_tag="Deba_1140" /note="Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation...; Region: AlaRS_core; cd00673" /db_xref="CDD:29811" misc_feature complement(1268245..1268259) /locus_tag="Deba_1140" /note="motif 1; other site" /db_xref="CDD:29811" misc_feature complement(order(1267621..1267623,1267630..1267635, 1267645..1267650,1267705..1267707,1267717..1267722, 1268035..1268043,1268047..1268049,1268053..1268055, 1268116..1268118,1268170..1268172,1268176..1268178)) /locus_tag="Deba_1140" /note="active site" /db_xref="CDD:29811" misc_feature complement(1268113..1268121) /locus_tag="Deba_1140" /note="motif 2; other site" /db_xref="CDD:29811" misc_feature complement(1267621..1267638) /locus_tag="Deba_1140" /note="motif 3; other site" /db_xref="CDD:29811" misc_feature complement(1266220..1266351) /locus_tag="Deba_1140" /note="Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; cl08469" /db_xref="CDD:158351" misc_feature complement(1265698..1265910) /locus_tag="Deba_1140" /note="DHHA1 domain; Region: DHHA1; pfam02272" /db_xref="CDD:190268" gene complement(1268335..1269423) /locus_tag="Deba_1141" /db_xref="GeneID:9493596" CDS complement(1268335..1269423) /locus_tag="Deba_1141" /note="COGs: COG0468 RecA/RadA recombinase; InterProIPR001553:IPR013765:IPR020584:IPR020588:IPR 020587:IPR003593; KEGG: gme:Gmet_0198 recombinase A; PFAM: RecA domain protein; SMART: ATPase AAA; SPTR: Q1K3C4 Protein recA; TIGRFAM: recA protein; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA" /codon_start=1 /transl_table=11 /product="recA protein" /protein_id="YP_003807103.1" /db_xref="GI:302342574" /db_xref="GeneID:9493596" /translation="MAAKETEVQTREKAMDAALKQIERSFGRGAIMRLGSGEALRDVQ AISTGSLGLDLATGVGGVPRGRVTEIYGPESSGKTTLALHVIAEAQKLGGVAAFIDAE HALDISYARRLGVNVDDLLVSQPDTGEQALDIAEILVRSGAVDVLVIDSVAALVPRAE LEGEMGDSHVGLQARLMSQAMRKLTSVISKSNTAVIFINQIRMKIGVMFGNPETTTGG NALKFYASLRLDIRSNSKIKDGEEEIGRRVKVKVVKNKVAPPFRLAEFDVIFGMGINR LGELIDIGVNHDVVTKSGAWYSYGDERLGQGRENACNHLRENPDLAADIDKRLRAKLG VGMVAETAQAGETKTTAPNAAPQPASQD" misc_feature complement(1268422..1269396) /locus_tag="Deba_1141" /note="RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983" /db_xref="CDD:29984" misc_feature complement(1268362..1269393) /locus_tag="Deba_1141" /note="recombinase A; Provisional; Region: recA; PRK09354" /db_xref="CDD:181793" misc_feature complement(order(1268473..1268475,1268611..1268613, 1268755..1268757,1268767..1268769,1269070..1269075, 1269088..1269108,1269112..1269117,1269325..1269339, 1269349..1269351,1269358..1269363,1269367..1269372)) /locus_tag="Deba_1141" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:29984" misc_feature complement(1269187..1269210) /locus_tag="Deba_1141" /note="Walker A motif; other site" /db_xref="CDD:29984" misc_feature complement(order(1268611..1268622,1268686..1268688, 1268725..1268727,1268824..1268826,1268974..1268976, 1269097..1269099,1269106..1269108,1269118..1269120, 1269184..1269204)) /locus_tag="Deba_1141" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29984" misc_feature complement(1268974..1268988) /locus_tag="Deba_1141" /note="Walker B motif; other site" /db_xref="CDD:29984" gene complement(1269446..1270012) /locus_tag="Deba_1142" /db_xref="GeneID:9493597" CDS complement(1269446..1270012) /locus_tag="Deba_1142" /note="COGs: COG1514 2'-5' RNA ligase; InterPro IPR009097:IPR014051:IPR004175; KEGG: sti:Sthe_1898 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; SPTR: D1C514 2'-5' RNA ligase; TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase" /codon_start=1 /transl_table=11 /product="2'-5' RNA ligase" /protein_id="YP_003807104.1" /db_xref="GI:302342575" /db_xref="GeneID:9493597" /translation="MRLFVALELPAAVKDHARAVIDRLRGAGADVKWLDAATMHVTLK FMGEVDQALLGDVRRALAGATAGFGPLELRVGGCGVFPSPRRPNVVWLGIDGQAQRLA ALAGRVDQALAQATGLPREKRPFTPHLTIGRVRQGRGSAQEALSLAVGALAELSGPAF QARAARLVQSTLTPRGAIHKPIDEYPLA" misc_feature complement(1269452..1270012) /locus_tag="Deba_1142" /note="2'-5' RNA ligase; Region: 2_5_ligase; TIGR02258" /db_xref="CDD:162789" misc_feature complement(1269740..1269994) /locus_tag="Deba_1142" /note="2',5' RNA ligase family; Region: 2_5_RNA_ligase; pfam02834" /db_xref="CDD:190445" misc_feature complement(1269488..1269730) /locus_tag="Deba_1142" /note="2',5' RNA ligase family; Region: 2_5_RNA_ligase; pfam02834" /db_xref="CDD:190445" gene complement(1269990..1271240) /locus_tag="Deba_1143" /db_xref="GeneID:9493598" CDS complement(1269990..1271240) /locus_tag="Deba_1143" /note="COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR001453:IPR008136:IPR008135; KEGG: gme:Gmet_0196 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; SPTR: C8QYB6 Competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain" /codon_start=1 /transl_table=11 /product="competence/damage-inducible protein CinA" /protein_id="YP_003807105.1" /db_xref="GI:302342576" /db_xref="GeneID:9493598" /translation="MRGEIICIGDELISGRVGEGNARYAMSRLHPLGLTVGAVVIVGD NAQDIAFALRQALGRADFVICCGGLGATDDDITARTAAEVFGLALTESQRMVANLRRC FQAMGLELRAETRKMAWLPDGAEILCATCAGFKLSGPDGRPVFFLPGVPREMRRLIDE SVLPALLGRFGHDAAVLSRKLRVFGLEEAEVGLRLEGLAQGVAGASVGFYPVFPEVQV QLSVLGQDRPTMEDALDGLEGRARQLLGDHVVGGDDGLEEAVGRVLRARGLRLAVAES CTGGLIGHRLTSRPGSSDYFDRGLIVYSNQAKQELLGVTADSLERHGAVSAQCAAEMA QGARQRAAADLGLAVTGIAGPGGGSDEKPVGTVFFGLADSQGVRSQGYLFRGGRAMIK AQAAENALDWLRRYLADDAFVRGA" misc_feature complement(1270020..1271240) /locus_tag="Deba_1143" /note="competence damage-inducible protein A; Provisional; Region: PRK00549" /db_xref="CDD:179060" misc_feature complement(1270734..1271237) /locus_tag="Deba_1143" /note="Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of...; Region: cinA; cd00885" /db_xref="CDD:58166" misc_feature complement(order(1270773..1270775,1270782..1270784, 1270794..1270799,1271031..1271039)) /locus_tag="Deba_1143" /note="putative MPT binding site; other site" /db_xref="CDD:58166" misc_feature complement(1270020..1270418) /locus_tag="Deba_1143" /note="Competence-damaged protein; Region: CinA; cl00666" /db_xref="CDD:186135" gene complement(1271365..1271784) /locus_tag="Deba_1144" /db_xref="GeneID:9493599" CDS complement(1271365..1271784) /locus_tag="Deba_1144" /note="COGs: COG5319 conserved hypothetical protein; InterPro IPR009562; KEGG: dal:Dalk_4330 protein of unknown function DUF1178; PFAM: protein of unknown function DUF1178; SPTR: B8FMH2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1178)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807106.1" /db_xref="GI:302342577" /db_xref="GeneID:9493599" /translation="MIVFDLECSAGHGFEGWFDSLEDLESQRERGLILCPVCGDAQVR RVPSRFGLSRAHGEPSNEEAARVLGLALQRYLAENFDDVGPNFAKEALKIHYGAAEPR NIRGFSSAQEEDLLHKEGVSFFKVGAPAPPAADDGED" misc_feature complement(1271413..1271784) /locus_tag="Deba_1144" /note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS; cl00993" /db_xref="CDD:197419" gene complement(1271809..1272639) /locus_tag="Deba_1145" /db_xref="GeneID:9493600" CDS complement(1271809..1272639) /locus_tag="Deba_1145" /note="COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; InterPro IPR013217; KEGG: mgi:Mflv_3065 tRNA (adenine-N(1)-)-methyltransferase; PFAM: methyltransferase type 12; SPTR: C2GHJ6 Possible tRNA (Adenine-N(1)-)-methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_003807107.1" /db_xref="GI:302342578" /db_xref="GeneID:9493600" /translation="MIIDHDQPPFAPGEVLVLIDERDRAGLLIVPPPEETVRFHGEEL SCEMLCQLREGQLIPVNKHRYLVMRPTMEQIIMNMPREAQVIYPKDLGMLLVWGDVAP GLRVLEVGAGHGALTMTLLRALGPEGRLVSYDIRQDHLNRTGKNIAAYLGQAALERWE PILADPAQEGFAQQAWDRLFTDVPEPWEMVLAARQALRPGGVWTAWVPTVPQMANLME AVFEDPYFCLPVCYETLQRYWHVRKPSVRPAHEMKAHTGFVVCCRRRWRGDWRQEPEA " misc_feature complement(1271848..1272615) /locus_tag="Deba_1145" /note="tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]; Region: GCD14; COG2519" /db_xref="CDD:32589" misc_feature complement(1272034..1272327) /locus_tag="Deba_1145" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1272094..1272096,1272142..1272150, 1272235..1272240,1272295..1272315)) /locus_tag="Deba_1145" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1272823..1274154) /locus_tag="Deba_1146" /db_xref="GeneID:9493601" CDS complement(1272823..1274154) /locus_tag="Deba_1146" /note="COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146:IPR014746:IPR004809; KEGG: sat:SYN_01628 glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; SPTR: Q2LXX3 Glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I" /codon_start=1 /transl_table=11 /product="glutamine synthetase, type I" /protein_id="YP_003807108.1" /db_xref="GI:302342579" /db_xref="GeneID:9493601" /translation="MSDMNKEQVLKAVRDNNVKFIRLWFTDILGMLKSFAISPAELEL AMEEGMGFDGSSIQGFARIDESDMVAMPDPNTFAILPWRPADKGAVARMFTDVLNPDL TPYVGDPRYVLKRQLKKAADKGYTMYVGPELEFFYFKNSEGTEVLDRGGYFDLTPLDV ASDLRRDTIFALESMGIKVEYSHHEVAPSQHEIDLRYQESLKMADAAMTYRLTVKEIA MKHGYYASFMPKPIFGENGSGMHTHQSLFKDGRNVFFDGSDKYNLSAAGKSYIAGLLK HAPEFCSIIAQWINSYKRLVPGYEAPVYVAWARRNRSALVRVPMYKPGKEMATRCELR CPDPACNPYLSFAVQLAAGLKGIEENYVLPEPVEEDIFEMSKKELAEHGITSLPSTLG EAIAITEKSAFVKEVLGDHVFEKFIENKKAEWDAFRLHVTDFELERYLPIL" misc_feature complement(1272835..1274136) /locus_tag="Deba_1146" /note="glutamine synthetase, type I; Region: GlnA; TIGR00653" /db_xref="CDD:161979" misc_feature complement(1273855..1274106) /locus_tag="Deba_1146" /note="Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951" /db_xref="CDD:146534" misc_feature complement(1273096..1273836) /locus_tag="Deba_1146" /note="Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120" /db_xref="CDD:189401" gene complement(1274573..1274914) /locus_tag="Deba_1147" /db_xref="GeneID:9493602" CDS complement(1274573..1274914) /locus_tag="Deba_1147" /note="COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR011322:IPR015867; KEGG: drt:Dret_0112 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: C8WZD9 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_003807109.1" /db_xref="GI:302342580" /db_xref="GeneID:9493602" /translation="MKLIIAYIKPERLNDVKQALYEAQIFNMSVTNVVGSGRQRGFSE TYRGVEQEVNLIKKVRLEIGVNDNFVEAAKAAIVKGARTGQIGDGVLFVLPVEESMRI RTGEAGPPAMG" misc_feature complement(1274600..1274905) /locus_tag="Deba_1147" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene complement(1274930..1276267) /locus_tag="Deba_1148" /db_xref="GeneID:9493603" CDS complement(1274930..1276267) /locus_tag="Deba_1148" /note="COGs: COG0004 Ammonia permease; InterPro IPR002229:IPR001905:IPR018047; KEGG: tnp:Tnap_0194 ammonium transporter; PFAM: ammonium transporter; SPTR: B1L988 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="YP_003807110.1" /db_xref="GI:302342581" /db_xref="GeneID:9493603" /translation="MLRRITKNTMKLLTLGLLLPGAVMAEESAPPAVNDMDTMWVLLA AFLVFFMQPGFAMVETGLTRAKNAVNILAKNFMDFALASILFFLVGYGFMFGEGNSFI GLSGFALEGMSDGNLPLLASWFFQAVFCGTAATIVSGGMAERTKFTSYILSTAVITTL VYPIIGHWTWGGGWLSQMGFFDFAGSTIVHSTGGWIALVGTMFLGPRYGKYTADGKSR VLAGHSVPLAALGVFILWFGWFGFNPGSQLAASGASNAGAISLITVNTNLSAAAGALA AMCTVWMMYGKPDLTMCMNGALAGLVAITAPCAVVSPGASIVIGILAGMLVVMGVMLL DKLHIDDPVGAIPVHAFNGAFGTLAVGVWGQKALGLANDGLLHGGGFTQLGVQATGVI AVGAFAMISMAIVFAIIKSTVGLRVSLEEELRGLDIEEHGMEAYSDFQIFTTR" misc_feature complement(1274960..1276156) /locus_tag="Deba_1148" /note="Ammonium Transporter Family; Region: Ammonium_transp; cl03012" /db_xref="CDD:194508" gene complement(1276333..1277109) /locus_tag="Deba_1149" /db_xref="GeneID:9493604" CDS complement(1276333..1277109) /locus_tag="Deba_1149" /note="InterPro IPR010239; KEGG: dol:Dole_0109 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C8QW49 Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (Gcw_chp); TIGRFAM: conserved hypothetical protein, proteobacterial" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807111.1" /db_xref="GI:302342582" /db_xref="GeneID:9493604" /translation="MKKLVCAMMLALALLVSAAGAGLAVAEESGPEVTATFDATFNSK YVWRGMLLVDDPVLQPSATVGVGNFSLNVWGDYEFTDVNGRQHEVDEIDITLNYTIPV GDLSIPVGAIVYTFPNGGNDTTELYVGVAYNWIVTPSLTCYYDVDELAGSFYFRGALD YSLDLPEVVSKVSWAAAIGASIGWGNSEYNNGYFGVDESHFSDWSIYASLPISFCKYF TVKPMITYTSLVDSEIRDAGKAIYTEENNFFYGISLSVSF" misc_feature complement(1276477..1277013) /locus_tag="Deba_1149" /note="Bacterial protein of unknown function (Gcw_chp); Region: Gcw_chp; cl09901" /db_xref="CDD:164168" gene complement(1277344..1278963) /locus_tag="Deba_1150" /db_xref="GeneID:9493605" CDS complement(1277344..1278963) /locus_tag="Deba_1150" /note="COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterProIPR020441:IPR009057:IPR003018:IPR002078:IPR 002197:IPR010113:IPR003593; KEGG: cts:Ctha_1655 transcriptional regulator, NifA, fis family; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: GAF domain protein; ATPase AAA; SPTR: Q8KC95 Nitrogen fixation specific regulatory protein nifA; TIGRFAM: Nif-specific regulatory protein; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: Nif-specific regulatory protein" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003807112.1" /db_xref="GI:302342583" /db_xref="GeneID:9493605" /translation="MTKAKVLPLNGKRKVGKTGMKTQAAPENIRREVQELQMLFKISQ LLETSLDLRDVMQPVLELMSEQMDMLRGTITLLNRETGELMIEAAHGLSAKQRQRGRY QLGEGITGKVVQTGRPMIVKDISEEPEFLDRTGARSGLDRRDISFICVPVKIGQEVIG ALSVDRLYADEDSLEEEVRLLGVISSMVAQAVTLRRKSMEERERLLEENKRLQDKLKD RFHPANIIGNSKVMQDVYDLIGQVSMSDATVLIRGESGTGKELVAHAIHFNSLRGQRP FIRVNCAALPETVIESELFGHEKGAFTGALQQRKGRFELADGGTIFLDEVGDLSPTVQ VKLLRVLQEKEFERVGGNQTIKVDVRILTATNRDLEDLAAHGQFRQDLYYRLNVFPIH LPPLCERGSDILLLANHFVEKFSRAAGKDIKRISTPAIDMLMSYHWPGNVRELENCIE RAVILSTDDVVHGHHLPPTLQTAEASGTVLKGSLQESLDNLERELIIEALKNSRGNKA KAARTLGVTERIMGLRVERFGIDPRRFRTTP" misc_feature complement(1277359..1278864) /locus_tag="Deba_1150" /note="Nif-specific regulatory protein; Region: nifA; TIGR01817" /db_xref="CDD:162544" misc_feature complement(1278388..1278813) /locus_tag="Deba_1150" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature complement(1277779..1278231) /locus_tag="Deba_1150" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(1278184..1278207) /locus_tag="Deba_1150" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(1277866..1277868,1277992..1277994, 1278181..1278204)) /locus_tag="Deba_1150" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(1277989..1278006) /locus_tag="Deba_1150" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(1277809..1277811) /locus_tag="Deba_1150" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(1277380..1277505) /locus_tag="Deba_1150" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(1279037..1280485) /locus_tag="Deba_1151" /db_xref="GeneID:9493606" CDS complement(1279037..1280485) /locus_tag="Deba_1151" /note="COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR000759:IPR009051:IPR013027:IPR012285:IPR 016040:IPR006005; KEGG: mva:Mvan_5697 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A1TH12 glutamate synthase (NADH) small subunit; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit" /codon_start=1 /transl_table=11 /product="glutamate synthase, NADH/NADPH, small subunit" /protein_id="YP_003807113.1" /db_xref="GI:302342584" /db_xref="GeneID:9493606" /translation="MGKPDAFIETKRKNFDKQGINQRLGHFCEFYLPLAEDELRQQAS RCMDCGVPFCHSFGCPLGNLIPEWNDLIFRGHWKEACELLHSTNNFPEFTGRLCPALC EAACTLGLNSQAVTVRQNEYSIVERGWSEGWIKPQPPRRESGKSVAVVGSGPAGMAAA QQLRRAGHAVALFEKAPRLGGILRFGIPDYKLDKCIIDRRLEQMKAEGVIFEAGVNVG VDVSPAYLMKRYDAVCICIGASVPRDLPVPGRELAGVHFAMDYLVQQNYRNAGLAIDG PEITARDKHVVIIGGGDTGADCLGTALRQGALSVHQFEIMPRPPACRDASTPWPQWPL MLRNSTSHEEGGERRWCVETSEFLGREGVLTGLRGHEVAWAPGARSCQLVEGSQFEME ADLVLLAMGFVHPRKMGLLDQMGLKLDARGNVQTDAAMATSTPGVFAAGDANTGQSLV VWALSAGRRMAHFVDAYLMGSSNLPCPDLMSR" misc_feature complement(1279061..1280485) /locus_tag="Deba_1151" /note="glutamate synthase subunit beta; Reviewed; Region: gltD; PRK12810" /db_xref="CDD:183763" misc_feature complement(<1279904..1280047) /locus_tag="Deba_1151" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene complement(1280544..1285130) /locus_tag="Deba_1152" /db_xref="GeneID:9493607" CDS complement(1280544..1285130) /locus_tag="Deba_1152" /EC_number="1.4.7.1" /note="COGs: COG0069 glutamate synthase domain 2; InterProIPR002489:IPR000583:IPR006982:IPR002932:IPR 013785:IPR017932; KEGG: ttr:Tter_0474 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase subunit alpha domain protein; PRIAM: glutamate synthase (ferredoxin); SPTR: D1CEN9 glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; glutamate synthase central domain; Glutamine amidotransferases class-II" /codon_start=1 /transl_table=11 /product="glutamate synthase (ferredoxin)" /protein_id="YP_003807114.1" /db_xref="GI:302342585" /db_xref="GeneID:9493607" /translation="MTPGQPKDDSHQPRRGGLPPKAGLYDPSFEHDACGVGFVANING AKTRDIIDKGISVLINLTHRGAVGSDPDTGDGAGLLFQVPDEFFRGPDAGLGFELPPA GRYAVGMVFMPTDRFASRECMEIFEDEARKKDCVVLGWRDVPHDRSTVGQTARANCPD VKQVFISGPEEGQDAFELRLFVIRRKVEKRVKASSADGVAMFHINTLSSRTICYKGMM LAHQVPRFYPDLASPSMKSALAVVHQRYSTNTFPTWDLAQPFRFLGHNGEINTLRGNI NNMRARYSTLSHEALGQDLREILPIIIESGSDSACFDNMLELLVLTGRSLPHAMMMMV PEAWGVKYYMGNDRRAFYEYHAMFMEPWDGPAALVATDGVRVCATLDRNGLRPARYVV SNDGFIVMASEVGVLDIAADNVAKKGRLSPGKMIMVDTEQGRLLGDEEVKAHICRRKP YRRWVTANRVELRGLFDGNGTVSVDKQTLLARQRAFGYSREDLDVILRPMVRDGKEPV GSMGDDTPLAVLSDRPRLLFEYFKQLFAQVTNPPIDPIREELVMSLTTYIGRQGNLLA ESPEHARMLKVASPILTNEDMANIRAHGQSEFQSVTLDITFDLNKGASGVDAALERLR HQAEEAVRGGCAVLILSDRAVCHDRVPIPSLLATSAVNQHLVAQGLRTSVSFIVESGE PREVMHFALILGYGATAVNPYLAFETIAEMLESGDFPPDMSIQDAVENYILATKKGLL KVLSKMGISTMRSYRGAQIFEALGLSRNLVEKYFTATPSRIGGLEIEDLALEAIARHE HGFNNAIYDAPVLDSGGRYALRRDGERHAWTPDTIRFLQQAARENDPEAYEKFARLIN QRDEELTTLRSLFDFAPATPVDIDTVEPASQIVKRFVTGAMSFGSISREAHEAMAIAM NRLGSRSNSGEGGEDRKRYLPLPNGDSLCSQTKQVASGRFGVTSEYLANCTEIQIKMA QGAKPGEGGQLPGHKVNVEIASVRNSTPGVSLISPPPHHDIYSIEDLAQLIFDLKNAN PLARINVKLVSEVGVGTIAAGVAKGHADAVLISGGDGGTGASPLSSVKHAGLPWELGL AETHQVLVKNDLRGRIVVQTDGTMRTGRDLAIAALLGAEEYGFGTAALIVLGCVMMRK CHSNTCPVGVATQDPRLRKRFTGKPEYLVNYFYFMAEEMRRIMASLGLRSVDEMIGRA DLLRMRDGVGHWKARKLDFGAIFSVPPESKIHAVRKVQEQDHAIDKILDRQLIAQCLP ALEKKQPVQLDLPIGNLNRTACTMLSYEISKRHGAEGLPEDYIVLNMRGSAGQSLAAF GAKGLTVIVDGDTNDYVGKGLSGAKIVVRPPRGAAFDWAKNVIVGNVALYGATAGEVY FAGLAGERFAIRNSGAMAVVEGVGDHGCEYMTGGRVVVLGRTGVNFAAGMSGGIAYVY DPDQDFDLRCNLDMIDIEPLAERADIALLRQLIENHLKYTGSPKAKWMLENWDGVLPL FVRVMPMEYRRALKQMAEEDMASRRTQAEQVHLG" misc_feature complement(1280631..1285073) /locus_tag="Deba_1152" /note="glutamate synthase subunit alpha; Provisional; Region: gltB; PRK11750" /db_xref="CDD:183297" misc_feature complement(1283784..1285031) /locus_tag="Deba_1152" /note="Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-...; Region: GltS; cd00713" /db_xref="CDD:48477" misc_feature complement(order(1284207..1284209,1284327..1284335, 1284396..1284398,1284939..1284941,1285029..1285031)) /locus_tag="Deba_1152" /note="active site" /db_xref="CDD:48477" misc_feature complement(order(1284378..1284380,1284645..1284647, 1284657..1284659,1284690..1284692,1284705..1284707, 1284711..1284713,1284750..1284752,1284762..1284764, 1284771..1284773)) /locus_tag="Deba_1152" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48477" misc_feature complement(1282830..1283696) /locus_tag="Deba_1152" /note="Glutamate synthase central domain; Region: Glu_syn_central; pfam04898" /db_xref="CDD:147192" misc_feature complement(1281507..1282643) /locus_tag="Deba_1152" /note="Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant...; Region: GltS_FMN; cd02808" /db_xref="CDD:73370" misc_feature complement(order(1281675..1281677,1281690..1281692, 1281708..1281710,1281732..1281737,1281798..1281800, 1281804..1281806,1281921..1281929,1282017..1282019, 1282143..1282145,1282203..1282205,1282221..1282223, 1282287..1282289,1282356..1282358,1282437..1282448)) /locus_tag="Deba_1152" /note="active site" /db_xref="CDD:73370" misc_feature complement(order(1281732..1281737,1281798..1281800, 1281804..1281806,1281924..1281929,1282017..1282019, 1282221..1282223,1282287..1282289,1282356..1282358, 1282437..1282448)) /locus_tag="Deba_1152" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature complement(order(1281921..1281926,1282143..1282145, 1282203..1282205)) /locus_tag="Deba_1152" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature complement(order(1281675..1281677,1281690..1281692, 1281708..1281710)) /locus_tag="Deba_1152" /note="3Fe-4S cluster binding site [ion binding]; other site" /db_xref="CDD:73370" misc_feature complement(1280631..1281377) /locus_tag="Deba_1152" /note="gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the...; Region: gltB_C; cd00982" /db_xref="CDD:29611" misc_feature complement(order(1280790..1280801,1280844..1280846, 1280853..1280855,1280862..1280864,1280901..1280903, 1280907..1280912,1280919..1280930,1280955..1280957, 1280961..1280966,1280973..1280987,1281012..1281014, 1281021..1281023,1281030..1281032,1281039..1281050, 1281105..1281107,1281114..1281116,1281129..1281137, 1281171..1281173,1281183..1281188,1281195..1281197, 1281252..1281257,1281264..1281266,1281273..1281278)) /locus_tag="Deba_1152" /note="domain interface; other site" /db_xref="CDD:29611" gene complement(1285214..1285891) /locus_tag="Deba_1153" /db_xref="GeneID:9493608" CDS complement(1285214..1285891) /locus_tag="Deba_1153" /note="COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991:IPR017926; KEGG: cja:CJA_0967 conserved proteinconserved protein; PFAM: glutamine amidotransferase class-I; SPTR: B3PLE3 Conserved proteinconserved protein; PFAM: Glutamine amidotransferase class-I" /codon_start=1 /transl_table=11 /product="glutamine amidotransferase class-I" /protein_id="YP_003807115.1" /db_xref="GI:302342586" /db_xref="GeneID:9493608" /translation="MNVLILQHHPAEPAGTLGAFLADKGCALDVRHLYAGQALPADDA GYGLIVSMGGPMNVYDEAEHPWLAAETALLRRALLAGRPVLGVCLGSQLMAKALGAPV TRSPRPEVGWFQIELTPAGLADPLLAGLDERPWVLQWHNDMFHIPAGAELLAASERCP HQAFRFGRGHALQFHVEVDAAIVDQWYENPAQRQEIAPGWADQGKIMNQHAQRIYGNL WAALSGR" misc_feature complement(1285313..1285891) /locus_tag="Deba_1153" /note="GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]; Region: GuaA; COG0518" /db_xref="CDD:30864" misc_feature complement(1285361..1285885) /locus_tag="Deba_1153" /note="Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; Region: GATase1_1; cd01741" /db_xref="CDD:153212" misc_feature complement(order(1285361..1285363,1285367..1285369, 1285628..1285630)) /locus_tag="Deba_1153" /note="catalytic triad [active]" /db_xref="CDD:153212" gene complement(1285888..1287585) /locus_tag="Deba_1154" /db_xref="GeneID:9493609" CDS complement(1285888..1287585) /locus_tag="Deba_1154" /EC_number="6.3.5.1" /note="COGs: COG0171 NAD synthase; InterPro IPR003010:IPR003694:IPR014729:IPR014445; KEGG: deb:DehaBAV1_0951 NH(3)-dependent NAD(+) synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: A5FQJ6 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase" /codon_start=1 /transl_table=11 /product="NAD+ synthetase" /protein_id="YP_003807116.1" /db_xref="GI:302342587" /db_xref="GeneID:9493609" /translation="MRIAQAQINPTVGDLAANTAMILDYMAQARQAQAGVVCFPELAV CGYPPEDLLLKPRFLADARAAVERLALAARGVTAVVGFPLAEGGVVRNAAAVLAEGRV AAVYRKIELPNYGVFDERRYFAAGDECLILDMGGTGVLVSICEDVWLAGNQVERVAAQ AGVGLTINISGSPFHAGKLGQRLEILGGFARRSGAAMCYANLVGGQDELVFDGGSMII DPDGQLSACAPRFTQGLYIHDLELPTRPPRPTPGATIVHVAAPAAPSGKIAAQTRAPE LNTEDEVLAALGLGLADYVRKNGFGKVTLGLSGGIDSALTAAVAVSALGAQNVVGVTM PSQYTSGETLSDAQLLAANLGVELLTVPLKGVYDVFIDQMRPALGPGPLGVEAENLQA RIRGAILMTLSNRFGWLVLTTGNKSETAVGYCTLYGDMAGGFALIKDVPKTLVYRLAR RVNQRAGRELIPASTIERPPSAELRPDQKDTDSLPEYDVLDPILQAYVEQDMVLDEIA ALGLADKDVVAKVVRMVDLNEYKRRQAPPGVKITPKAFGRDRRLPITNRYRPGWEGQ" misc_feature complement(1285909..1287585) /locus_tag="Deba_1154" /note="NAD synthetase; Provisional; Region: PRK13981" /db_xref="CDD:184436" misc_feature complement(1286860..1287582) /locus_tag="Deba_1154" /note="Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases); Region: GAT_Gln-NAD-synth; cd07570" /db_xref="CDD:143594" misc_feature complement(order(1286896..1286898,1286956..1286958, 1286962..1286976,1287010..1287015,1287022..1287027, 1287034..1287036,1287046..1287048,1287055..1287066, 1287100..1287102,1287109..1287111,1287118..1287123, 1287133..1287147,1287151..1287153,1287205..1287207, 1287211..1287216,1287223..1287228,1287232..1287234, 1287238..1287246,1287250..1287258,1287313..1287318, 1287331..1287333,1287406..1287408,1287415..1287426, 1287430..1287441,1287538..1287552)) /locus_tag="Deba_1154" /note="multimer interface [polypeptide binding]; other site" /db_xref="CDD:143594" misc_feature complement(order(1287052..1287054,1287142..1287144, 1287151..1287156,1287229..1287231,1287235..1287237, 1287244..1287246,1287250..1287252,1287262..1287264, 1287463..1287465)) /locus_tag="Deba_1154" /note="active site" /db_xref="CDD:143594" misc_feature complement(order(1287154..1287156,1287262..1287264, 1287463..1287465)) /locus_tag="Deba_1154" /note="catalytic triad [active]" /db_xref="CDD:143594" misc_feature complement(order(1286896..1286898,1286956..1286958, 1286962..1286970,1286974..1286976,1287010..1287015, 1287022..1287027,1287034..1287036,1287046..1287048, 1287055..1287066,1287118..1287123,1287133..1287147, 1287151..1287153,1287205..1287207,1287232..1287234, 1287238..1287246,1287250..1287258)) /locus_tag="Deba_1154" /note="protein interface 1 [polypeptide binding]; other site" /db_xref="CDD:143594" misc_feature complement(1285990..1286748) /locus_tag="Deba_1154" /note="NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to...; Region: NAD_synthase; cd00553" /db_xref="CDD:30166" misc_feature complement(order(1285990..1285992,1285996..1285998, 1286269..1286274,1286281..1286298,1286305..1286310, 1286371..1286376,1286380..1286388,1286392..1286400, 1286404..1286409,1286416..1286418,1286428..1286430, 1286482..1286487,1286494..1286499,1286506..1286517, 1286704..1286709,1286716..1286718,1286725..1286730)) /locus_tag="Deba_1154" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:30166" misc_feature complement(order(1285993..1285998,1286137..1286139, 1286164..1286166,1286170..1286175,1286299..1286301, 1286308..1286319,1286332..1286334,1286347..1286349, 1286401..1286403,1286407..1286412,1286419..1286421, 1286431..1286433,1286584..1286592,1286647..1286649, 1286662..1286673)) /locus_tag="Deba_1154" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:30166" misc_feature complement(order(1286173..1286178,1286260..1286262, 1286347..1286349,1286401..1286403,1286584..1286589, 1286647..1286652,1286662..1286670)) /locus_tag="Deba_1154" /note="ATP binding pocket [chemical binding]; other site" /db_xref="CDD:30166" misc_feature complement(order(1286173..1286175,1286332..1286334, 1286650..1286652,1286662..1286664)) /locus_tag="Deba_1154" /note="Mg binding site [ion binding]; other site" /db_xref="CDD:30166" misc_feature complement(order(1286134..1286157,1286164..1286187, 1286563..1286565)) /locus_tag="Deba_1154" /note="active-site loop [active]" /db_xref="CDD:30166" gene 1288047..1289036 /locus_tag="Deba_1155" /db_xref="GeneID:9493610" CDS 1288047..1289036 /locus_tag="Deba_1155" /note="COGs: COG1693 conserved hypothetical protein; InterPro IPR013668:IPR002846:IPR000169; KEGG: sat:SYN_03243 cytoplasmic protein; PFAM: Protein of unknown function DUF128; ribonuclease R winged-helix domain protein; SPTR: Q2LQG6 Hypothetical cytosolic protein; PFAM: Domain of unknown function DUF128; ribonuclease R winged-helix domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807117.1" /db_xref="GI:302342588" /db_xref="GeneID:9493610" /translation="MDERSRRKLLDILRVLAEADRPLGGTRIAHALNLAGKDMSQRTI RYYLNLTDAEGLTESVGRRGRQLTTRGKAELESAYVVDKVGFVAARADALTYGMNFRL RQGKGSVVVNISTFETARAGHAIEVMRRVYQAGLSMGQRLALAGAGARLGRLVVQPGE MAVATICSISVNGVLLAEGIPTTNRFGGLLQMRGGKPQRFLQIINYDGTTLDPLEIFI KGQMTSVSQAAATGDGVVGASFREIPTQAAEAARRLGARMERAGLGGILMIGRPGQPL LEVPVSQGRVGMIVLGGLNPMAAVEEVGVPTGNRAMGTLLPFEDLRPFTEVLR" misc_feature 1288065..1289015 /locus_tag="Deba_1155" /note="Repressor of nif and glnA expression [Transcription]; Region: COG1693" /db_xref="CDD:31879" misc_feature 1288080..1288271 /locus_tag="Deba_1155" /note="Ribonuclease R winged-helix domain; Region: HTH_12; pfam08461" /db_xref="CDD:117038" misc_feature 1288296..1289018 /locus_tag="Deba_1155" /note="Domain of unknown function DUF128; Region: DUF128; pfam01995" /db_xref="CDD:145269" gene 1289228..1290064 /locus_tag="Deba_1156" /db_xref="GeneID:9493611" CDS 1289228..1290064 /locus_tag="Deba_1156" /note="KEGG: ppf:Pput_2024 outer membrane porin; SPTR: C0FB13 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807118.1" /db_xref="GI:302342589" /db_xref="GeneID:9493611" /translation="MRKNTLSALAVIWALALCSPAVVWGQSLADPAAMTPKGQFALGL DLSYLFEQQTADFDLRSDDSNGDSGYSRNSGKIKNDQCYLLNLSYGVADWLSVFAQAG VVNGGKLIETNRDYPEEWEIKLRSQFVWGVGAKARAFKLDNGLALGLAARYLRYDNRK MVDWRDNVTGRSADQNWSTDEELDYWQADLAATLSMPFGPVTPYVGLGYSYFEAKESG RWTSKSDPSYYANYDAKMKSDNELLALCGLDVALGHGLSLYAQAEFVARTTVGLGLNW SF" gene complement(1290137..1290778) /locus_tag="Deba_1157" /db_xref="GeneID:9493612" CDS complement(1290137..1290778) /locus_tag="Deba_1157" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR001789; KEGG: gau:GAU_1166 NtrC family two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C1A7J8 Putative NtrC family two-component response regulator; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807119.1" /db_xref="GI:302342590" /db_xref="GeneID:9493612" /translation="MDSLENDLRFLGVLEKAAEIAQDLGSEAAVRYVRSSYHLLCKVY HPDLHRRRSDAANQGQVRLNQIKCRLDQTSDDDLARFLGRRGQASDGHPRVLVVEDED GLKDNLADLLGLEGYHVATAANGALGLREHLIFRPELVITDVVMPVMNGVEMIRHLRR RDAALKAIFISGFFGTHAVRAELREEIERLGYPALSKPFRPSQILALVRQALA" misc_feature complement(1290152..1290496) /locus_tag="Deba_1157" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1290143..1290493) /locus_tag="Deba_1157" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1290185..1290190,1290197..1290199, 1290266..1290268,1290326..1290328,1290350..1290352, 1290479..1290484)) /locus_tag="Deba_1157" /note="active site" /db_xref="CDD:29071" misc_feature complement(1290350..1290352) /locus_tag="Deba_1157" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1290326..1290334,1290338..1290343)) /locus_tag="Deba_1157" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1290182..1290190) /locus_tag="Deba_1157" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(1290778..1291650) /locus_tag="Deba_1158" /db_xref="GeneID:9493613" CDS complement(1290778..1291650) /locus_tag="Deba_1158" /note="COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537:IPR006371; KEGG: sfu:Sfum_0288 4-hydroxybenzoate polyprenyltransferase, PFAM: UbiA prenyltransferase; SPTR: A0LEY7 4-hydroxybenzoate polyprenyltransferase, TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase" /codon_start=1 /transl_table=11 /product="4-hydroxybenzoate polyprenyltransferase" /protein_id="YP_003807120.1" /db_xref="GI:302342591" /db_xref="GeneID:9493613" /translation="MKTSLAFARIKDFGELVKFSHTVFLFPFALSAVVLAMGQATLTW AKGFWIVVALVAARSAAMVINRIADLRYDAQNPRTAARPMVSGRVSKPLAWAWLIAAC AAFVLASAMLGPACLYLSPVALAWVLGYSFAKRFTFLCHIWLGLATALAPLGAWVAMT GALDWPIVLLALAVACWVGGFDIIYACQDIDFDRAHKLHSLPARLGLHGALWISRGLH LLAALGFWALGPLFGLGRIYLTGVALIALLLLVEHVLVAVKRANIPMAFFTVNGVVSI AYFLFLLIDRLASA" misc_feature complement(1290787..1291632) /locus_tag="Deba_1158" /note="UbiA prenyltransferase family; Region: UbiA; cl00337" /db_xref="CDD:193776" gene complement(1292261..1293718) /locus_tag="Deba_1159" /db_xref="GeneID:9493614" CDS complement(1292261..1293718) /locus_tag="Deba_1159" /note="COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: hmo:HM1_1945 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, PFAM: carboxylyase-related protein; SPTR: B0TFS3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, TIGRFAM: UbiD family decarboxylase; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases" /codon_start=1 /transl_table=11 /product="UbiD family decarboxylase" /protein_id="YP_003807121.1" /db_xref="GI:302342592" /db_xref="GeneID:9493614" /translation="MSAPQSMGQFVNDLEKRGWLRRIAEEVDPFLEVTALCDPVMKAG GPALLFEKTKGGGRPIAINLFGSRQRMAAALGVERLEDVAARIRAMMEMEIPDGLWAK VRSALPKLKQLAAFKPKEVKNASCQEVILEGARASLDILPILTCWPGDAGPFITLPQV ITADPQTGRQNIGMYRMQKFGPQTTGMHWHRHKGGAAHLAKARALGQKLPVAVALGGP PATTYAACAPLPEAVDELMFSGFLLESPLRVTKAVSCDLLVPAEAEAVIEGYVDPAEP MRVEGPFGDHTGFYSLEDKYPVFHVTHITHRKDFIYPATIVGRPPMEDFYLGLATERI FLPLLQAVLPEVVDYHMPAEGVFHNLVFVAIDKQYPGHAFKVMNALWGTGQMMFAKVL VIVDKHVNVQDPQEAWWEALNHIDPQRDVLFTRGPADALDHAAQLPWLHSKMGLDGTR KTADEGFHRPWPERVEMTPEVQKKALDKLKKWGLA" misc_feature complement(1292390..1293694) /locus_tag="Deba_1159" /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Region: UbiD; cl00311" /db_xref="CDD:185894" gene 1293868..1297503 /locus_tag="Deba_1160" /db_xref="GeneID:9493615" CDS 1293868..1297503 /locus_tag="Deba_1160" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358:IPR003594:IPR011006:IPR009082:IPR 011620:IPR013655:IPR013656:IPR013767:IPR003661:IPR001789:I PR005467:IPR000014:IPR000700:IPR001610; KEGG: cyn:Cyan7425_3579 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: B9XSQ1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: 5TMR of 5TMR-LYT; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003807122.1" /db_xref="GI:302342593" /db_xref="GeneID:9493615" /translation="MFANLLYNAVLLLALGYLYSLIARRWDASTIAGQIHKGLLFGAV ALGVMYNPVTLLPGLVFDTRSAVLGVAGLFGGPLTAAIAVVMAAAYRVWYGGSGVLTG VLVACLSGGIGAAYYLWLRRRGKSLGTLGLYVFGVVVHVAMLLGMLSLGWTAAKMVLA NIAAPVMLIYPVVTLLLALLLADGEKYIETEKRLAASENRFRLSFDNANIGMVIVGVD GRLVLANEQFAAMLGYDKDELIGLHFNEITHPDDRDIGKDYVASTVTGQAASARYEKR YLRKDGAVVWARVSLSLVRDAAGKPLHFISHAQDISESKKAEEALRESEYRFRYFVEN ANDIVYALSPEGSFTYITPNWFDYFGEPAEEALGKTFEPYVHPDDVGACRAFLTKVLE TGQKQSSVEYRVQRRDGSWRWHVSNGAPLRDAQGAIIGYVGIARDVTESKNTAEALRE AALRLQEAVRAANVGLWDWRLDTDEVFYSSEWKRQIGFEDHEIGNDFAEWESRVHPED LAPTMALIQRTLDGRAAKLQLEFRFRHKDGSYRWIMAQGSVLRDEAGRATRMLGSHID ITERKQAEAALRESERTLHTLMANLPGMAYRCRNDEHWTMEFVSQGCLALTGYRPEEL MIGGRVSYAQVIRPEDREMVAQTVRRALGRREVFELIYIIQTAQGGQKWVWERGCGVF GDDGRLLAVEGFISDMDELKRTEAALRANERRLSAIVEAMPDPMVVYDGQGRATYLNP AFGQVFGWRPEELLGKAIPFVPDDQKEAVVATIKDLFAHGGPVTMETKRLTKDGRLLD IVISAARVLDEAGRVTGMVVNLTDVTHTKRLEAQLRQAQKMEAIGTLAGGIAHDFNNI LTAISGNAELALDRARQGAATPAELEKILGAADRARRLIKKIMFFSRKVEFHPQPLNL NKVVTDAVSIIERAIPKMISVELRLEPTPWTIKGDATQLEQIILNLASNAQDAMQNGG RLIIETANVCLDEKDAASHFHMAAGDYLRLTVSDTGVGIDKHILEHIFEPFYTTKEIG KGTGMGLASVYGAVQNHGGHIYCYSEPGQGTVFKCYLPAIREDAERLAAPAFEVEAIA GGAETLLLVDDEAALRELSGEMLEAEGYRVLTADSGERAIDIFRDSESRVDLVVMDLG MPGMGGHKALKEILAIDPKAKVIIASGYLAEGHMRQALEAGAAGYVAKPYRRLELLAA IRQALDA" misc_feature 1293955..1294218 /locus_tag="Deba_1160" /note="Protein of unknown function (DUF1393); Region: DUF1393; cl01942" /db_xref="CDD:194214" misc_feature 1294039..>1294452 /locus_tag="Deba_1160" /note="Putative regulator of cell autolysis [Signal transduction mechanisms]; Region: LytS; COG3275" /db_xref="CDD:33086" misc_feature 1294456..1294830 /locus_tag="Deba_1160" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 1294489..1294800 /locus_tag="Deba_1160" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(1294537..1294539,1294549..1294551,1294567..1294569, 1294606..1294617,1294696..1294698,1294711..1294713) /locus_tag="Deba_1160" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(1294597..1294599,1294609..1294611,1294633..1294635, 1294642..1294647,1294732..1294734,1294738..1294740) /locus_tag="Deba_1160" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 1294837..1295199 /locus_tag="Deba_1160" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 1294870..1295181 /locus_tag="Deba_1160" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(1294918..1294920,1294930..1294932,1294948..1294950, 1294987..1294998,1295077..1295079,1295092..1295094) /locus_tag="Deba_1160" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(1294978..1294980,1294990..1294992,1295014..1295016, 1295023..1295028,1295113..1295115,1295119..1295121) /locus_tag="Deba_1160" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 1295254..1295568 /locus_tag="Deba_1160" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature 1295290..1295559 /locus_tag="Deba_1160" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature order(1295299..1295301,1295311..1295313,1295329..1295331, 1295374..1295385,1295464..1295466,1295479..1295481) /locus_tag="Deba_1160" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(1295356..1295358,1295377..1295379,1295401..1295403, 1295410..1295415,1295500..1295502,1295506..1295508) /locus_tag="Deba_1160" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 1295668..1296357 /locus_tag="Deba_1160" /note="FOG: PAS/PAC domain [Signal transduction mechanisms]; Region: AtoS; COG2202" /db_xref="CDD:32384" misc_feature 1295668..1295961 /locus_tag="Deba_1160" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(1295692..1295694,1295704..1295706,1295722..1295724, 1295770..1295781,1295857..1295859,1295872..1295874) /locus_tag="Deba_1160" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(1295761..1295763,1295773..1295775,1295797..1295799, 1295806..1295811,1295893..1295895,1295899..1295901) /locus_tag="Deba_1160" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 1296016..1297500 /locus_tag="Deba_1160" /note="histidine kinase; Provisional; Region: PRK13557" /db_xref="CDD:184141" misc_feature 1296031..1296336 /locus_tag="Deba_1160" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(1296079..1296081,1296091..1296093,1296109..1296111, 1296145..1296156,1296232..1296234,1296247..1296249) /locus_tag="Deba_1160" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(1296139..1296141,1296148..1296150,1296172..1296174, 1296181..1296186,1296268..1296270,1296274..1296276) /locus_tag="Deba_1160" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 1296382..1296576 /locus_tag="Deba_1160" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1296400..1296402,1296412..1296414,1296424..1296426, 1296433..1296435,1296445..1296447,1296454..1296456, 1296505..1296507,1296517..1296519,1296526..1296528, 1296538..1296540,1296547..1296549,1296559..1296561) /locus_tag="Deba_1160" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1296418..1296420 /locus_tag="Deba_1160" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1296724..1297068 /locus_tag="Deba_1160" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1296742..1296744,1296754..1296756,1296763..1296765, 1296877..1296879,1296883..1296885,1296889..1296891, 1296895..1296900,1296967..1296978,1297024..1297026, 1297030..1297032,1297045..1297050,1297054..1297056) /locus_tag="Deba_1160" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1296754..1296756 /locus_tag="Deba_1160" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1296889..1296891,1296895..1296897,1296967..1296969, 1296973..1296975) /locus_tag="Deba_1160" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 1297150..1297494 /locus_tag="Deba_1160" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1297159..1297164,1297297..1297299,1297321..1297323, 1297381..1297383,1297438..1297440,1297447..1297452) /locus_tag="Deba_1160" /note="active site" /db_xref="CDD:29071" misc_feature 1297297..1297299 /locus_tag="Deba_1160" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1297306..1297311,1297315..1297323) /locus_tag="Deba_1160" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1297447..1297455 /locus_tag="Deba_1160" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(1297521..1300568) /locus_tag="Deba_1161" /db_xref="GeneID:9493616" CDS complement(1297521..1300568) /locus_tag="Deba_1161" /note="COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395:IPR018271; KEGG: reh:H16_B0196 DNA repair exonuclease, SbcC; PFAM: SMC domain protein; SPTR: Q0K4S7 DNA repair exonuclease, SbcC; TIGRFAM: exonuclease SbcC" /codon_start=1 /transl_table=11 /product="SMC domain protein" /protein_id="YP_003807123.1" /db_xref="GI:302342594" /db_xref="GeneID:9493616" /translation="MRVERLCLEAFGPFIQRQEIDFSRLEGRSPFLIQGPTGAGKTTI LDAICFALYGASSGGEREARNLRCDFAPDHAATEVCLEWSLGQRRFRVLRRPERLRPK IRGAGFTRQPAEATLWRLDDGPAKVLASGWAPVGEACQELLGFSQEQFRQVVILPQGQ FRRLLMADSREREAVLATLFQTGFYQRLTEALKERARGAAEQIRQLLQAGQNILAQAE AENADALAARIDALAEDLRQNQDARERLRQAEQAARQALNQAQAQAAALDELAQAQSA AADLAAQAPAMDQLRLALARAQSAAALEDVAQNSGQAVDHAQKSADALALRQGLEAKA GQALQKASEALEAERAREAERQSARERLEGLAALEKTVAGLEQAAADLARLQQEAQAA QQAQTAAEDDLAARQAQAQQAAAALERARALAGQLDGLKSLAQQTARQRQDALALAEL AAQGPGQTRAADWAGQQARDAQDALAQAQARRDELLRLWRDGQAAALAAGLAPGAPCP VCGSTNHPAPAEGEPNAPDQKALEAAEQTVERARQALADRERQAERAARDLVELRRRQ EELRLALGPLAEESPEELARRANEANERLAQADRAGQSLPALQAAQVAAQGALAQAQA ALLAAQASFQDLARQTAAQRALHAERAQNTPEQLRPPGALAQASRQARDQLTRLESAL ERARTTHDLASRDLAAAQAARAAAQEAAQEAAARAALAQAELARRLALAGFAKEAQMT AARMEEKTMAEGQRALQDFAAAQAAAAGRLARAQAAAASLSRPDLPALELAANQAAQA LERAIDAGGQLAQRLRQARAWQDELGRLTSQVATLEQDHGVIGRVAEAAGGQNAMGVT LQRFVLATLLDEVLEAASRRLGRMSRGRYALRRAVDRQDRRKAAGLDLMVDDDHHGSQ RPVSTLSGGESFLASLALALALAEVVQAHAGGVRLETIFIDEGFGSLDAEALDLAMAA LIDLRDGGRAVGVISHVEEMKERIDARLEIIPSRRGSVARLAL" misc_feature complement(<1300074..1300568) /locus_tag="Deba_1161" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1300443..1300466) /locus_tag="Deba_1161" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1300095..1300097,1300440..1300448, 1300452..1300457)) /locus_tag="Deba_1161" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1300095..1300106) /locus_tag="Deba_1161" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1297563..>1298147) /locus_tag="Deba_1161" /note="exonuclease SbcC; Region: sbcc; TIGR00618" /db_xref="CDD:129705" misc_feature complement(1297542..>1297826) /locus_tag="Deba_1161" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1297782..1297811) /locus_tag="Deba_1161" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1297701..1297718) /locus_tag="Deba_1161" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1297683..1297694) /locus_tag="Deba_1161" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1297599..1297619) /locus_tag="Deba_1161" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(1300568..1301707) /locus_tag="Deba_1162" /db_xref="GeneID:9493617" CDS complement(1300568..1301707) /locus_tag="Deba_1162" /note="COGs: COG0420 DNA repair exonuclease; InterPro IPR004843:IPR004593; KEGG: sfu:Sfum_2821 nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; SPTR: A0LM47 Exodeoxyribonuclease I subunit D; TIGRFAM: nuclease SbcCD, D subunit; PFAM: Calcineurin-like phosphoesterase; Type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD" /codon_start=1 /transl_table=11 /product="nuclease SbcCD, D subunit" /protein_id="YP_003807124.1" /db_xref="GI:302342595" /db_xref="GeneID:9493617" /translation="MRLLHSADWHLGRVLHGAPLIEDQAHALDQLTAIAADTRPDAVI IAGDVYDRAVPPPEAVELLDDTLARLVLGHKLLVIVIAGNHDSPRRLGFGARLLAHGG LHVFGPCQARPAPLILSDAHGPVAIHALAHAEPAVVRAVLADEAPRDHDQAFAARLAD LAPAPAGARRVLAAHAFVAGGLESLSERPLSVGGSGAVAVERFRGFDYVALGHLHRPQ QVSGVNARYAGSLLKYSFSEVDQPKSLSLVELDAAGLAGVGAIAIEPLRDARIIGGRL EELLADPPATGRQDYLRVELQNIEPVIDAIGRLRAVYPNVLQVTRPHLATAPAQGQID PRRLDDAQIFAAFYRQTTGQEATPAMLEAFAAEARQLRRQEREAH" misc_feature complement(1301057..1301707) /locus_tag="Deba_1162" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature complement(1300997..1301704) /locus_tag="Deba_1162" /note="Mre11 nuclease, N-terminal metallophosphatase domain; Region: MPP_Mre11_N; cd00840" /db_xref="CDD:163616" misc_feature complement(order(1301063..1301071,1301183..1301185, 1301453..1301458,1301564..1301566,1301678..1301680, 1301684..1301686)) /locus_tag="Deba_1162" /note="active site" /db_xref="CDD:163616" misc_feature complement(order(1301063..1301065,1301069..1301071, 1301183..1301185,1301456..1301458,1301564..1301566, 1301678..1301680,1301684..1301686)) /locus_tag="Deba_1162" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163616" misc_feature complement(order(1301306..1301311,1301438..1301443, 1301447..1301449,1301555..1301557,1301654..1301674)) /locus_tag="Deba_1162" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:163616" misc_feature complement(1300646..1300915) /locus_tag="Deba_1162" /note="Type 5 capsule protein repressor C-terminal domain; Region: SbcD_C; pfam12320" /db_xref="CDD:192985" gene complement(1301707..1302939) /locus_tag="Deba_1163" /db_xref="GeneID:9493618" CDS complement(1301707..1302939) /locus_tag="Deba_1163" /note="COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR002933:IPR010182; KEGG: dvm:DvMF_0550 diaminopimelate aminotransferase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: B8DKS8 peptidase M20; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase" /codon_start=1 /transl_table=11 /product="acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase" /protein_id="YP_003807125.1" /db_xref="GI:302342596" /db_xref="GeneID:9493618" /translation="MDNSQLIIEKVEQYRQEIIEIQRALVATPALGPDNGGQGEAAKA ALVQGWLEAMGLAVQRVDAPDPRAAGGARPNVAATYPGGPGRRVWVLSHLDVVPPGDA ALWSSDPWRLRVDGDKLYGRGVNDNHAGLVSSLIGLKALIDLGIKPAGDVGLILVSDE ETSSKHGLAHVLEARPDLFGPDDLIIVPDSGLEDGSGIEVVEKSMLWLRVEVSGRQVH ASMPHKGVNALHAAARMICAVGEIAERYPQTDPRFDPPGSTMQATRKDAGVQNINTVP GRDVFYLDCRMLPGISLGEVIAEIRRVFEAIAAEDGATVDVEIVQKLQAPPATPDEAP VVLALRRAVKRVLGLEARPYGIGGGTVAAFFRQKGLPAAVWQTAVDTAHMPDEWISLD GLIKDAAVFALVYAGFEG" misc_feature complement(1301716..1302906) /locus_tag="Deba_1163" /note="diaminopimelate aminotransferase; Provisional; Region: PRK13983" /db_xref="CDD:184437" misc_feature complement(1301725..1302894) /locus_tag="Deba_1163" /note="M28, and M42; Region: Zinc_peptidase_like; cl14876" /db_xref="CDD:196837" misc_feature complement(order(1301791..1301793,1302373..1302375, 1302457..1302462,1302562..1302564,1302661..1302663)) /locus_tag="Deba_1163" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193495" gene 1303078..1307685 /locus_tag="Deba_1164" /db_xref="GeneID:9493619" CDS 1303078..1307685 /locus_tag="Deba_1164" /note="KEGG: sfu:Sfum_2413 hypothetical protein; SPTR: A0LKZ2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807126.1" /db_xref="GI:302342597" /db_xref="GeneID:9493619" /translation="MTVQKGGENLPAGMKRLTGLYRFIPPESYPELGIDPEDVPIGAI AAEDHPPFLPDRFGGNAYGLGLYEQGLLSDHETALIETLDMDRPQQVQQHYRPLNDIF KSLGLLIRYTSRGEPYYLIPRQFVAHFLVEVQAITDEIDDFVKDLLARKLKETTTLGL VTAESDLLLPELQAKMPHIDIRVPRTLEDMADLAGLCGAVVVVGDPREVILDQLSRQG KPLPQTRDDRESFGHFAASQIYDMLSPEGEVLCLCEQPLAATREAIEVKFKQPIDLKR FLLFSHVYRTKRRYASEDGSVQLVSRFDFEAFITGLGLYHETVETLLGGRPLAEVDAA EIDRLPHQDLPLPRGSVERVMAKWRRWFGTFFHLDRLDSTLPDVQRQEWQRHYELDGD LPETLVALQGRRRQPPLSLASLESQVAWRHLAGCRRELLAEYKNSFAYVLGVLEYLDQ VRLGKVDGLPGLELSRLRKPFENIGKHPQFKDVLRLVEQAPRLRRMEERLNPGGILGA QTPVLENLAKLSLMGLEEGPLDQLYLIVLGHSTMSRVTFGKLPEQSLRPLTDLGRYRD LDEAIDILRLYRLLSVAESVSAGKRGLGPLQVEELFHLYDQAVRVVTDPELDWDVLLD AQISRFGGVQAKATRKMLKIFNLFDHLDDWQQLDMAGPRLKEVMADFDPDRLEAIGQV VQLLRQMGQFVGRHYAADSTARPYFFRALLNSELHGSGRLLPQLGTAAGFTLLWICVN TSERRLINFNALQKAGDGTGLTRRQEKLRSALLNLRVDDLAPAWLDGLKEQMAEKGEA YILDSGLYLTIDRRTGALTPQFVDAEEELERLEKDLAEAEQKALPEVGERRLAEMDRR VAAVANFLRAQQGGVIGEAMSFMRRRYDFLFTRLEDYLLDQLFHVAVFAENLGRLVRC CPNLVGRVLSGRAGDSESERRLAAARKLSALHLRDVGQFQDMELSHEMARQEFGPATA GIVGVSRGQFQALAASLAQLLQKQPAMERLLMLAVLLHQDAAPDQRPDVRRVTQVAQR LGLDQDQSDDLLFLLEHLDTPRQIIMGEACLGALEPLLQRRDPLLVEALFLLSIIRTA ARKEGLLTEDLTQSFVRLLEGLRRLGREGRSARQAHEAQIVDFAKQMVAFEHYREIQA NLAPSTSLRNLLETSKLPEKDRAQWLEKGRRQAGLDRLLKLRGLLTTDALDILMLRHQ VPAPYIYRLKGLRSIGVTRFERDLYEGMRLYRGLVALPDEIQTQLLEALSDPARPMRL AGLRGAAERLTYANQIRLLMLGMAAGMAMQGLSPGPVKVSFAPLAMIMERRFEVVNEA ITAIDPALLIGPRADLDMALAASRSLALRYDYENHLVLLELSPAASLERKIEAVRLAS SVEELKELYHNELRNLRLTTHRNLDYQQRLEDAFEETLGRLGLSMLERVGEAMAKEDD LERLAAIFESAWEEGLELPLGRDRQQSLRDLFDMNVERLRGAILDQLARELNQVADQP ALEDLWARAKERLRGQRRHLGKDFFLLVAHRFDRRAREIGG" gene complement(1307697..1308536) /locus_tag="Deba_1165" /db_xref="GeneID:9493620" CDS complement(1307697..1308536) /locus_tag="Deba_1165" /EC_number="1.17.1.2" /note="COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: dal:Dalk_3710 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: B8FLP4 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)" /codon_start=1 /transl_table=11 /product="hydroxymethylbutenyl pyrophosphate reductase" /protein_id="YP_003807127.1" /db_xref="GI:302342598" /db_xref="GeneID:9493620" /translation="MKVVLAKTAGFCMGVRRAVDIALAEADRHEGAIYTYGPLIHNPQ VLESLKQKGVAVLEEIPPAGTGGTVIIRAHGVPPQDMRALAQAGFAPIIDGTCPHVGR VQKIIAKAADGGQDVVIVGDRQHAEVRGLLGHARGRGQVVASAEEVAGLPQLQRPVLV AQTTQNEAVFAQVQAAMQARFRQVEVHATICAATHRRQEEARRLAGLVDAMVVVGGRN SGNTARLAQVAAASGKPSIWVETPDELDPARFSGLGTVGVTAGASTPNWLIEQVVAVL ESL" misc_feature complement(1307700..1308533) /locus_tag="Deba_1165" /note="(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming); Region: ispH_lytB; TIGR00216" /db_xref="CDD:161769" misc_feature complement(1307700..1308530) /locus_tag="Deba_1165" /note="LytB protein; Region: LYTB; cl00507" /db_xref="CDD:193845" gene complement(1308533..1309513) /locus_tag="Deba_1166" /db_xref="GeneID:9493621" CDS complement(1308533..1309513) /locus_tag="Deba_1166" /note="COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269:IPR018517:IPR013785; KEGG: gsu:GSU1005 dihydrouridine synthase family protein; PFAM: dihydrouridine synthase DuS; SPTR: Q74EF7 Dihydrouridine synthase family protein; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family" /codon_start=1 /transl_table=11 /product="dihydrouridine synthase DuS" /protein_id="YP_003807128.1" /db_xref="GI:302342599" /db_xref="GeneID:9493621" /translation="MQFVGLSLQSPFFAAPMAGVSSPAFRLMAKRGGAGLVYTEMISA VGLVRGHKKTLELCLTLPEERPVALQLFGADPEIMGRAAALASRMPVDLIDINMGCPA RKVRRQGAGSALLEDIPRAAAVMAAVAQAASLPATVKLRLGPSDDDLERIVPPLLAAG AKAVCLHARTTRQAFAGQADWAAIARLSAWCPVPVIGNGDVRGEQDALGMLRQTNCQA VMIGRGAMGDPWIFGRAADLLAGRAVERASLAQRRQSLLQHTELALSLGGDKLAAHFA KQFMMWHAKGLPGAADFRRLACQERELGRLLTLCEEFFDQLAARQGEQAA" misc_feature complement(1308560..1309513) /locus_tag="Deba_1166" /note="tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]; Region: COG0042" /db_xref="CDD:30391" misc_feature complement(1308797..1309483) /locus_tag="Deba_1166" /note="Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and...; Region: DUS_like_FMN; cd02801" /db_xref="CDD:73368" misc_feature complement(order(1308845..1308850,1308914..1308916, 1308920..1308922,1309013..1309015,1309097..1309099, 1309223..1309225,1309304..1309306,1309391..1309393, 1309463..1309471)) /locus_tag="Deba_1166" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73368" misc_feature complement(order(1308845..1308847,1308914..1308919, 1309004..1309009,1309013..1309018,1309091..1309093, 1309097..1309099,1309211..1309216,1309304..1309306)) /locus_tag="Deba_1166" /note="active site" /db_xref="CDD:73368" misc_feature complement(order(1309007..1309009,1309013..1309015, 1309091..1309093,1309214..1309216)) /locus_tag="Deba_1166" /note="catalytic residues [active]" /db_xref="CDD:73368" misc_feature complement(order(1308914..1308919,1309004..1309006, 1309016..1309018,1309097..1309099,1309211..1309213)) /locus_tag="Deba_1166" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73368" gene 1309616..1310563 /locus_tag="Deba_1167" /db_xref="GeneID:9493622" CDS 1309616..1310563 /locus_tag="Deba_1167" /note="COGs: COG0731 Fe-S oxidoreductase; InterPro IPR007197:IPR006638; KEGG: hha:Hhal_2049 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C8R0D6 radical SAM domain protein; PFAM: radical SAM superfamily" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003807129.1" /db_xref="GI:302342600" /db_xref="GeneID:9493622" /translation="MSLTSRQSDDQAVFGPVPSRRLGLSLGVDLLWPKTCTLDCVYCE CGPTTQKTTQRGRFRPAEDVLAQVRKRLEQLDVPPDHITLAGSGEPTLHLDLGLVLRR LREMNAGRVAVLTNGTLCFDERVRDELCQAEVVVPSLDAVSQRAFQQVNRPAKGLSAA AMIEGLKLLRRQFKGQFILEILLVEGLNDTPGELAGLMAAAKAIGPDAVQLNTIVRPP AVAGFRPVDDQRLADIAAAFDPPAQVIAPPRARAVGDHGHLARQAVEMTRRRPCTIED IAAALGLAGDAAADLVASLRAAGLMGLERHDGREYYRGV" misc_feature 1309652..1310446 /locus_tag="Deba_1167" /note="Fe-S oxidoreductases [Energy production and conversion]; Region: COG0731" /db_xref="CDD:31075" misc_feature 1309721..1310251 /locus_tag="Deba_1167" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(1309721..1309723,1309727..1309729,1309733..1309735, 1309739..1309747,1309868..1309870,1309877..1309882, 1309955..1309963,1310027..1310029,1310159..1310161) /locus_tag="Deba_1167" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene 1310713..1311471 /locus_tag="Deba_1168" /db_xref="GeneID:9493623" CDS 1310713..1311471 /locus_tag="Deba_1168" /note="InterPro IPR011449:IPR013424; KEGG: pat:Patl_1971 agarase; PFAM: protein of unknown function DUF1555; SPTR: B9ZJM7 Putative uncharacterized protein; TIGRFAM: PEP-CTERM exosortase interaction domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807130.1" /db_xref="GI:302342601" /db_xref="GeneID:9493623" /translation="MASRKLLIILMALALSLTMAGVALASTIDLAGTGAGGSFDGVVH GRNDKYKPNKNNTGLPDGRVNWGSTKEPGWLHLGWLEMTSSDTAELNDKYLWMENFNI YEATGVDPKDGQSFALGTEYSINQVLQLTIAESFGKHNSINAGGDDFGSLTLTGLNFG FDGTRGGSLTLTGFITSTYLGDDPSQFSLTLFDHDSGGNQIMNALNKGKPSAQNVNVD GQIVVPSAGTPEPTALLLLGSALGLAGVLRRRRA" gene complement(1311549..1312733) /locus_tag="Deba_1169" /db_xref="GeneID:9493624" CDS complement(1311549..1312733) /locus_tag="Deba_1169" /note="COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: dsy:DSY4797 hypothetical protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: Q24N06 Putative uncharacterized protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_003807131.1" /db_xref="GI:302342602" /db_xref="GeneID:9493624" /translation="MDLHVDIKTLLLAITVVDFFLAAAMIMFWKVRKTYPGFGLCAAS ALTIAVTYLLFTIRGLGAPPTLGVVLPNVLVVLTSVLRLEGTKLFLGWSSVKRLNLWL WPVLAVAYFCFFTHVQNDILARTAGSNIFMICIALRLTWLMATKPSGQGKGPYYLAAL VFLALALMLIIRLSYMFMDRQVAQQQFIMGVFNAIVLIVAVLVELSWAWIFLVMNSQR LEQEITSAQEKLILLAASDPLTGLVNRRRFLEMGQAELERSLRYGRPLAVLVMDVDHF KRVNDSFGHATGDLVLRQTAQACLAVLREPDVLGRLGGDEFAALLPETTLEGALALAE RLRQAVGGLRLDYRGQAVRTSLSIGVAAMKPDDTPHGLIERADAALYKAKHQGRDQVQ AA" misc_feature complement(1311558..1312025) /locus_tag="Deba_1169" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(1311789..1311791,1311918..1311920)) /locus_tag="Deba_1169" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(1311786..1311797,1311801..1311803, 1311867..1311869,1311879..1311881,1311891..1311896, 1311903..1311905)) /locus_tag="Deba_1169" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(1311729..1311731,1311813..1311815)) /locus_tag="Deba_1169" /note="I-site; other site" /db_xref="CDD:143635" gene complement(1312941..1313951) /locus_tag="Deba_1170" /db_xref="GeneID:9493625" CDS complement(1312941..1313951) /locus_tag="Deba_1170" /note="COGs: COG1294 cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: dds:Ddes_2195 cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; SPTR: B8J446 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB)" /codon_start=1 /transl_table=11 /product="cytochrome d ubiquinol oxidase, subunit II" /protein_id="YP_003807132.1" /db_xref="GI:302342603" /db_xref="GeneID:9493625" /translation="MLETIWFVLWGVLWAVYFMLDGFDFGVGTLMPFLAKDENERRVL YNAQGPFWDGNEVWLITAGGVTFAAFPTTYAVMFSSLYSALMLILFALILRGVTFEFR GKAEGTAWRGLWDACHFIGSAAPALLFGVAFANIFAGIPIDADGVYQGTLLTLLNPYG LLGGAFFLVMFMYHGALWLTVKTSGDLERRARTAASGLWVALLLLAVAFLVYTWFATN LYANYLAHPLLWLIPALAVAGLVLSRLSIGSPWKAWGLSCLTVVACTLFGVAGLFPNM LPSSIDPAASLTAFNSSSSPLTLKIMLGVALVMVPVVIVYQAWVYKHFSHKITDDQHL AY" misc_feature complement(1312980..1313951) /locus_tag="Deba_1170" /note="Cytochrome oxidase subunit II; Region: Cyto_ox_2; pfam02322" /db_xref="CDD:190279" misc_feature complement(1312965..1313948) /locus_tag="Deba_1170" /note="cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219" /db_xref="CDD:187194" gene complement(1313956..1315290) /locus_tag="Deba_1171" /db_xref="GeneID:9493626" CDS complement(1313956..1315290) /locus_tag="Deba_1171" /note="COGs: COG1271 cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: sfu:Sfum_0339 cytochrome bd ubiquinol oxidase, subunit I; PFAM: cytochrome bd ubiquinol oxidase subunit I; SPTR: A0LF37 cytochrome bd ubiquinol oxidase, subunit I; PFAM: Bacterial cytochrome Ubiquinol Oxidase" /codon_start=1 /transl_table=11 /product="cytochrome bd ubiquinol oxidase subunit I" /protein_id="YP_003807133.1" /db_xref="GI:302342604" /db_xref="GeneID:9493626" /translation="MDVLMLSRLQFAAATFFHFLFVPLTLGLSILVAIMETIYVKTGD EQYKRMAKFWGKLFLINFAIGVVTGITLEFQFGTNWSRYSKYVGDIFGSLLAVEATVA FFLESTFIAVWVFGWERLSPKAHVATIWLVAAASNISAYWIIAANAFMQHPVGYVLRN GRAELDDFIAVATQKFAVLQFAHTLSGAYILAGFFVMGICAYHLLRRQNVEFFSRSFR LALNFALIFSVAAAITGDLGGKEVAQVQPSKLAAMESHWQTQESAPIYLITVPRLGGE GNIVEWLPIPGALSLLAFNDFGAKVVGLNDIPPEDRPPVLPTFLGFRLMVGLGALFIA LTVWGWLKRKQLVDNPTYLKIMLWSLPLPYLANEAGWMLTEVGRQPWIVWGLMRTSEA FSPIATSQVAISLAAFIVVYGLLGAAAFYLLAKHAKQGPEMAAATAGARKEG" misc_feature complement(1313995..1315275) /locus_tag="Deba_1171" /note="Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; cl00562" /db_xref="CDD:193871" gene 1315607..1317427 /locus_tag="Deba_1172" /db_xref="GeneID:9493627" CDS 1315607..1317427 /locus_tag="Deba_1172" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764; KEGG: scl:sce3575 butyryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: A9GS62 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003807134.1" /db_xref="GI:302342605" /db_xref="GeneID:9493627" /translation="MGVNHFNRDPRDTQFLLHEHLGVAKLLAYEPFADFSVEHIDQVM AQAHQVANQCLGPAMQDGDREGCQFQAGEVKVPSAFHDCWRALRQGGWLAMANDRRWG GLGLPAVVSGLANEYFFGANMALNMYPLLTSGNARLIEAFGTEADRELFVPRMYSGQW AGTMCLTEPLAGSDVGWLETSATPDPDSPDKRVYKIKGRKRFISAGNHDLTENIIHLL LARIEGAPHGTKGISLFIVPKIWVEPDGALGRPNDVVCTGIEHKMGIHGSATCALHFG GSDQCRGILLGEPHTGMAKMFQMMNEARVGTGLMGLALSASAYDAARTWAKRRVQGPP FTDRRGQRVKIINHEDVRRMLLNMKAGTEAMRALIAKTYYLMDVARFEPDAAARQKAA GLVELYTPLVKAYCTDFGFSLTREALQVFGGAGYCNGFPAEQYVRDCKILSIWEGTNY IQSLDLVGRKLGLEGGAVFQGALADIQTFCADNAGDADFGKCFSLLSRAVGVVGFMAG GFLNYLGDGRIGFIPLNATAFLECLAEVVMASLSLEQALVARRKLATVDPASADGLFY RGKMHGARFFCQRVLPAVFARQIAFEQEDASALEIPEACF" misc_feature 1315637..1317352 /locus_tag="Deba_1172" /note="acyl-CoA dehydrogenase; Provisional; Region: PTZ00456" /db_xref="CDD:185635" misc_feature 1315733..1316992 /locus_tag="Deba_1172" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1316006..1316008,1316096..1316098,1316102..1316104, 1316210..1316212,1316216..1316218,1316936..1316944, 1316948..1316950,1316954..1316956) /locus_tag="Deba_1172" /note="active site" /db_xref="CDD:173838" misc_feature 1317023..1317415 /locus_tag="Deba_1172" /note="Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806" /db_xref="CDD:193282" gene complement(1317499..1318140) /locus_tag="Deba_1173" /db_xref="GeneID:9493628" CDS complement(1317499..1318140) /locus_tag="Deba_1173" /note="COGs: COG2524 transcriptional regulator protein; InterPro IPR000644; KEGG: pth:PTH_2126 CBS domain-containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: A5D0B8 FOG: CBS domain; PFAM: CBS domain" /codon_start=1 /transl_table=11 /product="signal transduction protein with CBS domains" /protein_id="YP_003807135.1" /db_xref="GI:302342606" /db_xref="GeneID:9493628" /translation="MKIKHWMSPNPITVSEDTQVTAAHKIMAENRVRRLPVVDGEGRL KGLITLRNIIAASPSAAEALSRHEMNALMAKLKVGHIMVKNPETVSPEDSVMDVVRDG HVRGIGAFPVVEDGKLVGIVTETEIFRAMLHIFGAHQGNSIVVIENVDLENSLGEVSK IAALVEEIGVPVEAVFSLRQRRGVGHRVYLRAQAPDPAPVAARLAKAGYKVAK" misc_feature complement(1317757..1318134) /locus_tag="Deba_1173" /note="FOG: CBS domain [General function prediction only]; Region: COG0517" /db_xref="CDD:30863" misc_feature complement(1317751..1318116) /locus_tag="Deba_1173" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce...; Region: CBS_pair_ACT_assoc2; cd04585" /db_xref="CDD:73085" misc_feature complement(1317586..1317891) /locus_tag="Deba_1173" /note="The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-...; Region: CBS_pair; cl10010" /db_xref="CDD:99705" gene 1318332..1319243 /locus_tag="Deba_1174" /db_xref="GeneID:9493629" CDS 1318332..1319243 /locus_tag="Deba_1174" /note="InterPro IPR006342; KEGG: cyt:cce_0521 hypothetical protein; SPTR: B5JGB3 methyltransferase, FkbM family protein; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family" /codon_start=1 /transl_table=11 /product="methyltransferase FkbM family" /protein_id="YP_003807136.1" /db_xref="GI:302342607" /db_xref="GeneID:9493629" /translation="MTRKIFKLLYKLGLLRRFEQIDAIHYLKRLARGKHPADGGYFSE RDALQFTPGPALKRTSFRGASVFFRCEMTYPLEWKILQSGYFDRDVLELVADLARPGL AIADVGGNVGGLAIPWALALPEVEVHSFEPNPLALARLRHNLALNPEAKVHVVEKAVG ERPGTLEFHAFDGQYLGDSSFVQPPKIDHPGRVMAVEVITLDDYFEGRRIEPGVIKLD IQGYEAQALAGAARLLSRARPYVVFEHEDQNFPQASQAARAKQVLADIFAEHHYDVYY ITRFSRDLLLPVDWQRPLAGNLLALPL" misc_feature 1318641..1319066 /locus_tag="Deba_1174" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1319343..1324904 /locus_tag="Deba_1175" /db_xref="GeneID:9493630" CDS 1319343..1324904 /locus_tag="Deba_1175" /note="COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR008930:IPR002890:IPR011625:IPR001599; KEGG: acp:A2cp1_1926 alpha-2-macroglobulin domain protein; PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; alpha-2-macroglobulin; SPTR: B8J778 Alpha-2-macroglobulin domain protein; PFAM: Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region; Alpha-2-macroglobulin MG1 domain" /codon_start=1 /transl_table=11 /product="alpha-2-macroglobulin domain protein" /protein_id="YP_003807137.1" /db_xref="GI:302342608" /db_xref="GeneID:9493630" /translation="MKNRGMWAKARRGSWAGMLLLAGLCLLAGPTWAKIEGPAALKVL SLLPAGQTERLSQIVVVFDQPMVALGAAKQDEASAPLRLEPMPPGAFRWLDPQTLAYI LDKPIAGATRIKLTVPAGAKALSGAVLAQAVEAFAATPPLTVTEFGPQAGEELGPKPQ IRLTINQPARLESLRAKLSLSVNGRPVAATVDYEPPPQWQDGSQGLAASYIVSPVESL PIDAKVNLLVAPGVMPADGDMPSSEAFSADYTSFGATRLNKWEMSRAVLGGLDPAASL TLEFNNPVKMADLLAKLRIEPALELPTAEPEESGSCWISLDLPFQPGQKYRLTIEPGL TDDYGAKSLKAQSIELAIGQRNPIMALGPEMGVIEPPGVAPLRVRNLAAVDLGLRFFG PEQAVPALAAEQERPWDAKPKPLRAGQEGVVLKRLKIKAPANQSILRPLDLAALLGRS PRGGLVLMDARATWPDEEGKPVERVQRSLVQVSDLGLSLKLGADGGLAWLTSLSGGGP LEGVALELRDRKNRVLWKGLSDAQGLAQLPALAQLDPAPDKERSWRDPVVYLLARRGE DFAVLPGDWGADLVYELPYQVNYVGPQGSPPLAAHALVQLPLYQPGQQVRFVVYARRH AAQGLVAAHPLTARVLVKDPYGRIVFEQKADANPYGALACELKLGQDARLGAHAISLM VGKDEISAGGFQVASFRPPDFKVELNAPAAHVGAGPLGQARVDAQYLFGAPVAGGKAQ LKAGQEPTTFAPARLADYAVGDLPLPGQEPNQNKDLGQQDAALDASGQAKFGLPAAEP LPGLPVNVRLEAAASDVAGVTHVAVSNVVAHPAQFYLGVKTPLLASAGAAAKIELLAA GVDNQALAASAVSVKAYRQWWETVRERGPGGYYRYLGQARRQEVFSQTLDLAAEGGGF DFTPPQAGTYVIVAEAKDAAGRLSRSASYLWASGPGQAGWERFDGHRLELVAQNDDLA PGQSAKILIKNPFAKATALISVERRGVRRVQVRQIEGPAPVIDVAVEQADAPGVYVGV LLIRGRVAEPVRMGVDLGKPQVRIGYVALNVRRPGGGLAAKVSVDAEQARPGQEIRAT VEVSRDGAPAPAQVTLLAVDERVLTAAGDDNSYDPNQTFGRMDGLAVLTADARTQVIG KVLASQKGEGGAGGGGLGQAVRQRFHPAVFWLAMGQTDAHGRLTAAFRLPDTLTAYRV VAVAADKLDGFAMAKAQVRASRPLQVLSALPRFVTSGDRLQARFVVQNLGRAPLKARV ELKAVGLHISDPAAQELDLPPGGGGRTVGFWVTAERPGTAVLDVRASAGDELDAARYS LAVNPRAALVTTAASGALRPDGGQKSAATPLELPVGARPGRGGLVVNLAPSLAPAMAR PTQMLVEYPFDCWEQRLSRAAARALRLGEGPALGLTPAPDDLAAVQATMALAMDYQTS SGGFAYWRGQDSAELFLSAYTLLADGQIAQAGPKLGDDERKRLIEYLRQTLNERRPGQ RRDFYYATSEALAIWALASAGQNARAALESALTRLDGLGPFGLAALIQAAAAGKTPGA LETLLARLEPLADVTATEAHFTTINPEGMKLALGSTLRDNAAVLWALCAARPDHPLAA KLARWVAGRLADQESISTQEAVFGLWALRAYLRQAGAQGGPLNVAVSLAGRELLQGGF ADGRQGPLTARMVRDLLAPGQRQELVVSAKGQGALFWTARLAYEPGGNPNKPINAGLR LARFLSAPDGGEPPWRLTQRVECFITVAVSQTRHHVAVEVPYPAGLEPERAAFAAQDD AGAWPWLWRELCKDGLLLYAPQLNPGVYSYRFVLRAVAPGSFVMRPARAEEMYAPEVF GQTAEETVEVR" misc_feature 1320297..1324901 /locus_tag="Deba_1175" /note="Large extracellular alpha-helical protein [General function prediction only]; Region: COG2373" /db_xref="CDD:32520" misc_feature 1321161..1321427 /locus_tag="Deba_1175" /note="MG2 domain; Region: A2M_N; pfam01835" /db_xref="CDD:190129" misc_feature 1322226..1322678 /locus_tag="Deba_1175" /note="Alpha-2-macroglobulin family N-terminal region; Region: A2M_N_2; pfam07703" /db_xref="CDD:191819" misc_feature 1322868..1323134 /locus_tag="Deba_1175" /note="Alpha-2-macroglobulin family; Region: A2M; pfam00207" /db_xref="CDD:143964" misc_feature 1323489..1324265 /locus_tag="Deba_1175" /note="This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate...; Region: ISOPREN_C2_like; cl08267" /db_xref="CDD:126391" gene 1324901..1327111 /locus_tag="Deba_1176" /db_xref="GeneID:9493631" CDS 1324901..1327111 /locus_tag="Deba_1176" /EC_number="2.4.1.129" /note="COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterProIPR012338:IPR001264:IPR001460:IPR009647:IPR 011815; KEGG: ade:Adeh_2036 glycosyl transferase family penicillin-binding protein transpeptidase; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; PRIAM: peptidoglycan glycosyltransferase; SPTR: Q2IJH6 glycosyl transferase, family 51 / Penicillin-binding protein, transpeptidase; TIGRFAM: penicillin-binding protein 1C; PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 1C" /protein_id="YP_003807138.1" /db_xref="GI:302342609" /db_xref="GeneID:9493631" /translation="MKKRLIGLALATALLPLALWGVIALWPGQLPAEGYGPAKDRLIL AADGQILAQLANPLTRQGPWTPTSEITPLLRAALIAAEDRRFYAHPGVDPLALGRAAW QWLRAGRVVSGGSTISMQLARLLRPQRRTLAAKLDEAATALWLEARLGKDEILGQYLN RAPFGGPLVGVGAASRLLLGKAPQRLAPHEAALLAALPKNPSGLLAKSQRPRLKARRD AILRAMAQAGVLDRAALARALAAPVEVGAPPPRPSAPHFARALARRLPPDAPAATPTF IDPELQAALSALAAEHVRQGRELGMRQAAILVLRNSDRAVLAWVGSADWQDPNAGQVD GVLAPRQPGSALKPFIYALALERGHTLAERLADEPLGLATAGGVFRPVDYDGRHRGMV SLRVALASSLNLPALRLVDKLGQPRVLAGLRGLGLALPRAADHYGLGLALGNGEVSLL DLTVAYAALAAGGRWAPARLWPGQAPAVERQALDPAACRLIADVLADDQARALGFGRH SLLELPFPAAVKTGTSQHFRDNWCLGFTADYTVGVWVGDFAGRPMRGVSGLSGAGPLW RKAMMFLHRRAPGALPPWPPGVRRLRVRADSGQLAGPDCQRTVEEYFMAGFGPAGRRS PGHQASDATPQPGLELVRPTHGAVYALDPDLPAGLQVLACQAKAPGPVSAARWLLDGQ ELPAEGDPLHRRAPLRPGRHVLELVVSGPWGRATARAAFDVLPRPPASAAGQAL" misc_feature 1325018..1327021 /locus_tag="Deba_1176" /note="penicillin-binding protein 1C; Region: PBP_1c; TIGR02073" /db_xref="CDD:162685" misc_feature 1325039..1325575 /locus_tag="Deba_1176" /note="Transglycosylase; Region: Transgly; cl07896" /db_xref="CDD:195645" misc_feature 1325810..1326610 /locus_tag="Deba_1176" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" misc_feature 1326779..1327021 /locus_tag="Deba_1176" /note="Penicillin-Binding Protein C-terminus Family; Region: BiPBP_C; pfam06832" /db_xref="CDD:148440" gene 1327173..1328135 /locus_tag="Deba_1177" /db_xref="GeneID:9493632" CDS 1327173..1328135 /locus_tag="Deba_1177" /EC_number="2.3.1.30" /note="COGs: COG1045 serine acetyltransferase; InterPro IPR011004:IPR001451; KEGG: sfu:Sfum_2682 serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; PRIAM: serine O-acetyltransferase; SPTR: A0LLQ8 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase" /codon_start=1 /transl_table=11 /product="serine O-acetyltransferase" /protein_id="YP_003807139.1" /db_xref="GI:302342610" /db_xref="GeneID:9493632" /translation="MKIHLPGAVEATCQWDEEQSASMVERLPRIVRRLVATCGTERCY EHVSSAPLPKRQAVVEIVNLGRRIIFPGYFEDGPLDRVNLEYHLGQETVRLYELLAEQ ISRAVRHECLRQDLECTHCRQRGDEAAYWFIEQLPALRELLAEDVRAALEGDPATSSP DEVIFSYPGLLAITVYRLAHALLHLDVPMLPRMMTEHAHSRTGIDIHPAAEIGRRFFM DHGTGVVIGGTAVIGDGVRVYQGVTLGALSLPRDQVERLKSQKRHPTIGDDVVIYAGA TILGGDTVVGARSVIGGNVWLTRSVPPDTRVIMAEPELRYIGPK" misc_feature 1327599..1328096 /locus_tag="Deba_1177" /note="serine O-acetyltransferase; Region: cysE; TIGR01172" /db_xref="CDD:188118" misc_feature 1327776..1328096 /locus_tag="Deba_1177" /note="Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-...; Region: LbH_SAT; cd03354" /db_xref="CDD:100045" misc_feature order(1327779..1327781,1327785..1327787,1327830..1327832, 1327956..1327958,1328049..1328051,1328058..1328060, 1328064..1328066) /locus_tag="Deba_1177" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100045" misc_feature order(1327827..1327832,1327887..1327892,1327908..1327913, 1327956..1327961,1327992..1327994,1328040..1328042, 1328046..1328051,1328058..1328060,1328064..1328066, 1328088..1328090) /locus_tag="Deba_1177" /note="active site" /db_xref="CDD:100045" misc_feature order(1327827..1327832,1327908..1327910,1327956..1327961) /locus_tag="Deba_1177" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100045" misc_feature order(1327887..1327892,1327908..1327913,1327992..1327994, 1328040..1328042,1328046..1328051,1328058..1328060, 1328064..1328066,1328088..1328090) /locus_tag="Deba_1177" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100045" gene 1328171..1329097 /locus_tag="Deba_1178" /db_xref="GeneID:9493633" CDS 1328171..1329097 /locus_tag="Deba_1178" /EC_number="2.5.1.47" /note="COGs: COG0031 Cysteine synthase; InterPro IPR001926:IPR005856:IPR005859; KEGG: dal:Dalk_2651 cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; SPTR: B8FIV3 Cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases" /codon_start=1 /transl_table=11 /product="cysteine synthase" /protein_id="YP_003807140.1" /db_xref="GI:302342611" /db_xref="GeneID:9493633" /translation="MGVLSQVSQAVGRTPLVAIDGSLFPGTRARVLAKLEYQNPLGSV KDRIALAMIEAAEAAGSIGPGSLVVEPTSGNTGIGLAMVCALKKMRLKLCMPETMSVE RRKLLVHLGAELVLTPGALGMNGAVDEARRIVAQNPGAHMPNQFANPANPAAHRQTTG PEIWADTDGQVDIFVAGVGTGGTITGVSQALKARKPDLWSVAVEPAQSPVLAGGQAGP HLIQGIGAGFVPPVLERSLIDEVIAVDGEDALTVARLLAARQGLLCGISSGANVWAAM DLAARPEHAGKTIVTVLPSTGERYLSTRLFTD" misc_feature 1328189..1329088 /locus_tag="Deba_1178" /note="cysteine synthases; Region: cysKM; TIGR01136" /db_xref="CDD:162219" misc_feature 1328204..1329076 /locus_tag="Deba_1178" /note="CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine...; Region: CBS_like; cd01561" /db_xref="CDD:107204" misc_feature order(1328216..1328224,1328264..1328266,1328282..1328284, 1328288..1328290,1328414..1328416,1328423..1328425, 1328471..1328476,1328483..1328488,1328495..1328500, 1328663..1328668,1328939..1328947,1328951..1328959, 1329032..1329034,1329062..1329064,1329071..1329073) /locus_tag="Deba_1178" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:107204" misc_feature order(1328303..1328305,1328393..1328395,1328702..1328719, 1328837..1328839,1328969..1328971,1329050..1329055) /locus_tag="Deba_1178" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107204" misc_feature 1328303..1328305 /locus_tag="Deba_1178" /note="catalytic residue [active]" /db_xref="CDD:107204" gene 1329137..1329727 /locus_tag="Deba_1179" /db_xref="GeneID:9493634" CDS 1329137..1329727 /locus_tag="Deba_1179" /note="KEGG: hor:Hore_13900 hypothetical protein; SPTR: B8CXX1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807141.1" /db_xref="GI:302342612" /db_xref="GeneID:9493634" /translation="MKTIFARATTFCLLIAAAMALSACGGQAARDYYADYYTQQLDTY PNTMLTYDTGLSQWSFNDDVFDVTITLEEDQDYAFNIVLHNTSDGPLVIDWNRVFYVD INGQTHHAIHNGVDYFSPMAAQHPTALAAGATLRDLVRPANLVEEDGAVRFAPPSGND IAAWGDWPAEVTLLIPVHSEFGEKVYRFPLDVSQPY" gene 1329745..1330422 /locus_tag="Deba_1180" /db_xref="GeneID:9493635" CDS 1329745..1330422 /locus_tag="Deba_1180" /note="COGs: COG2045 phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: ttu:TERTU_0169 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulfolactate phosphatase; SPTR: C5BLF2 Putative 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase" /codon_start=1 /transl_table=11 /product="2-phosphosulfolactate phosphatase" /protein_id="YP_003807142.1" /db_xref="GI:302342613" /db_xref="GeneID:9493635" /translation="MEIDIVSPADDLESLDGVVVVLDIFRASNTILALLAAGAGRVFL VNELDAARRLKAARPRAALLGERGGLPPADFDGGNSPAQAARLTRPGREVILTTSAGT KAIHRLGGAARVFYGAFAGAAALARAIEECAPRRVSLLAMGLEARQPADEDDAAAWFL AQRLRGQRPDFAAIRRRLLDCPGARRLRRLGQADDLEFCLSLDSQAIVPLARFGQPAP WAEAYRP" misc_feature 1329751..1330371 /locus_tag="Deba_1180" /note="2-phosphosulpholactate phosphatase; Region: 2-ph_phosp; cl00895" /db_xref="CDD:186243" gene complement(1330427..1331632) /locus_tag="Deba_1181" /db_xref="GeneID:9493636" CDS complement(1330427..1331632) /locus_tag="Deba_1181" /note="COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015424:IPR000653:IPR015421:IPR015422; KEGG: bsu:BSU37890 glutamine-dependent sugar transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: P39623 Spore coat polysaccharide biosynthesis protein spsC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family" /codon_start=1 /transl_table=11 /product="DegT/DnrJ/EryC1/StrS aminotransferase" /protein_id="YP_003807143.1" /db_xref="GI:302342614" /db_xref="GeneID:9493636" /translation="MLPLRQDYLPFSRPSFGPEEEREIIECLRSGWITTGPRTHRFEE AFAAFCGAPHAVACNSGTSALQLAVAALGLGPGDDVLVPSFTWVSTAAVVAHQGARPV LCEIDPQAWTMDPVWLERFIETRYKKDAAGLMVGPEGGRLRAMIPVHYAGQAADMAPL MELAQKYGLKVIEDAAHCVGSTYQGRHLGLIGDVGCFSFYANKNMTTAEGGMLICRDQ ALADKLRVLGMHGLSKDAWKRYAKGGSWWQPVVELGFKFNMTDIAASLGLHQLAKVEG FNQRRRQLAAIYDQGLSGLTNLSVCQDLGRGVHARHLYAICLEPGAPLDKTAMIAALA QRNIGAGVHYIPVHIHPYYQQNFGYKRGDLPATERVYDGQISLPLFPDMTDDDAAYVI DSVRGLLAG" misc_feature complement(1330436..1331620) /locus_tag="Deba_1181" /note="Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399" /db_xref="CDD:30748" misc_feature complement(1330445..1331575) /locus_tag="Deba_1181" /note="3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616" /db_xref="CDD:99740" misc_feature complement(order(1330604..1330606,1331024..1331029, 1331039..1331041,1331102..1331104,1331111..1331113, 1331447..1331452)) /locus_tag="Deba_1181" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99740" misc_feature complement(order(1331024..1331026,1331039..1331041, 1331102..1331104,1331111..1331113,1331375..1331377, 1331447..1331452)) /locus_tag="Deba_1181" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99740" misc_feature complement(1331024..1331026) /locus_tag="Deba_1181" /note="catalytic residue [active]" /db_xref="CDD:99740" gene complement(1331660..1332205) /locus_tag="Deba_1182" /db_xref="GeneID:9493637" CDS complement(1331660..1332205) /locus_tag="Deba_1182" /note="COGs: COG1787 endonuclease distantly related to Holliday junction resolvase and Mrr-like restriction enzyme; InterPro IPR011335:IPR007560; KEGG: bbe:BBR47_35100 hypothetical protein; PFAM: restriction endonuclease; SPTR: C0ZFC8 Putative uncharacterized protein; PFAM: restriction endonuclease" /codon_start=1 /transl_table=11 /product="restriction endonuclease" /protein_id="YP_003807144.1" /db_xref="GI:302342615" /db_xref="GeneID:9493637" /translation="MLWALWAAGLALAARLAAQHGGLPVQWRDGLAVAAALFLAVAVP FVIQHIKTQRLHRSGVHLIDAMDGQTFERYLAAIFRRNGFKVKTTAKSGDYGADLLLW RDGQSIVVQAKRHQGVVGLAAVQQAAAARQHYGADQAMVVASSRFSRQARLLAQSNGV QLWDRAVLQAVATGRKTIRRN" misc_feature complement(1331711..1331983) /locus_tag="Deba_1182" /note="Restriction endonuclease; Region: Mrr_cat; cl00747" /db_xref="CDD:153969" gene complement(1332244..1332873) /locus_tag="Deba_1183" /db_xref="GeneID:9493638" CDS complement(1332244..1332873) /locus_tag="Deba_1183" /note="KEGG: hmo:HM1_2365 acetoin utilization protein, subunit A; SPTR: B0TIH4 Acetoin utilization protein, subunit a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807145.1" /db_xref="GI:302342616" /db_xref="GeneID:9493638" /translation="MDQGQIIDTPFGQVSLRLLDAPEQLEGLSLDEGFGQFERYRSFF PDMASLQRQLARPGALLAVALLGRAIVAYALLRPAMADERWTQLADPPMMELIVEAAR NRRGGGLMKPLVAMVVQRPENDERIVYLVAYCWTWDLDDTGKTMAQYRQTLKSLVEGL GLREYPTNEPNVALRPENLFMARLGAKIEADRACKRRFSNLLFGIQEDW" gene complement(1332954..1333823) /locus_tag="Deba_1184" /db_xref="GeneID:9493639" CDS complement(1332954..1333823) /locus_tag="Deba_1184" /EC_number="6.2.1.5" /note="COGs: COG0074 Succinyl-CoA synthetase subunit alpha; InterProIPR005810:IPR016040:IPR016102:IPR003781:IPR 005811:IPR017440; KEGG: cch:Cag_0466 succinyl-CoA ligase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein; SPTR: Q3ATD6 Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, subunit alpha" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase, subunit alpha" /protein_id="YP_003807146.1" /db_xref="GI:302342617" /db_xref="GeneID:9493639" /translation="MSILVNKNSRVVVQGVTGREGMFHTEKMIEYGTNVVAGVTPGKG GSTVLGAPVFDTVAQAVAQTGADVSVVFVPAAFAADAACEAADAGIKLVVVITEHIPA KDMIMAKAYLRARGVLMVGPNCPGVITPGECKLGIMPGYIHKPGKVGLISRSGTLTYE VVHQLTQAGLGQSTCIGIGGDPIIGLGFVELLKLFAADDQTEAVCTIGEIGGDAEERA AALVKAGYPKPVFGFVAGLTAPPGKRMGHAGAIISGGKGKAADKLAAMEDAGITVVRR LGDFGATVAKVLG" misc_feature complement(1332957..1333823) /locus_tag="Deba_1184" /note="succinyl-CoA synthetase subunit alpha; Validated; Region: PRK05678" /db_xref="CDD:180194" misc_feature complement(1333527..1333808) /locus_tag="Deba_1184" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(<1333083..1333373) /locus_tag="Deba_1184" /note="CoA-ligase; Region: Ligase_CoA; pfam00549" /db_xref="CDD:144220" gene complement(1333820..1334989) /locus_tag="Deba_1185" /db_xref="GeneID:9493640" CDS complement(1333820..1334989) /locus_tag="Deba_1185" /EC_number="6.2.1.5" /note="COGs: COG0045 Succinyl-CoA synthetase subunit beta; InterProIPR016102:IPR013650:IPR005811:IPR017866:IPR 013816:IPR011761:IPR005809; KEGG: mgm:Mmc1_1747 succinyl-CoA synthetase (ADP-forming) subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: A8TIM8 Succinyl-CoA synthetase, subunit beta; TIGRFAM: succinyl-CoA synthetase, subunit beta; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, subunit beta" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase, subunit beta" /protein_id="YP_003807147.1" /db_xref="GI:302342618" /db_xref="GeneID:9493640" /translation="MNVHEYQAKQMLAAFGVPVPKGGLAESAAQAQDVANGLAAEGYV VKAQIHAGGRGKGGGVKVVKTAAEAAEAAAKMLGMHLVTHQTGPEGKKVRKVWIEQAT AIAKELYLAVVLDRASECLAVMASPDGGMDIEEVAAKTPERIFATRIDPGQSLWAFQA RKLLFGCGLNAAQVRQGETLLKNLARLAWEKEATLVEINPLVVTAAGDLLAVDAKINF DDSALKRQPDVAALKDPLETDPLELAATEQGLNYIRLNGNVGTMVNGAGLAMATMDVI KMAGAEPANFLDVGGGASEEMITKAFEIILEDQNVQAILINIFGGILRCDVLAAGVVA AARKVDLKLPLVVRLEGTNVEEGRRILAESDLAFEVAASLSEAAEKIAKVAGGSK" misc_feature complement(1333826..1334989) /locus_tag="Deba_1185" /note="succinyl-CoA synthetase subunit beta; Provisional; Region: sucC; PRK00696" /db_xref="CDD:179088" misc_feature complement(1334381..1334986) /locus_tag="Deba_1185" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(1333853..1334206) /locus_tag="Deba_1185" /note="CoA-ligase; Region: Ligase_CoA; pfam00549" /db_xref="CDD:144220" gene 1335121..1335197 /locus_tag="Deba_R0022" /db_xref="GeneID:9493641" tRNA 1335121..1335197 /locus_tag="Deba_R0022" /product="tRNA-Met" /db_xref="GeneID:9493641" gene complement(1335325..1335915) /locus_tag="Deba_1186" /db_xref="GeneID:9493642" CDS complement(1335325..1335915) /locus_tag="Deba_1186" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mba:Mbar_A2392 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q469Y0 Putative uncharacterized protein; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003807148.1" /db_xref="GI:302342619" /db_xref="GeneID:9493642" /translation="MQTWRHSDPPAGKRRHPSSYGMQDPQIIFDALGLEPGDAFLDAG CGLGEYALEAARIVGPTGMVHAFDITPGCIEDLSRQAAMHGLTQVRAAVVDITRPLPL PDESITAGLLGTVLHIPPVAQAMKEVIMEMGRVLRPGGRLGVIECNPHSPCGPPRSMR PTATRITNALEACGFMSLGVQDMGYLYLALFAKPSS" misc_feature complement(1335367..>1335828) /locus_tag="Deba_1186" /note="23S rRNA (uracil-5-)-methyltransferase RumA; Region: rumA; TIGR00479" /db_xref="CDD:129571" misc_feature complement(<1335598..1335798) /locus_tag="Deba_1186" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1335628..1335636,1335709..1335714, 1335769..1335789)) /locus_tag="Deba_1186" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1335999..1337291) /locus_tag="Deba_1187" /db_xref="GeneID:9493643" CDS complement(1335999..1337291) /locus_tag="Deba_1187" /note="KEGG: ppd:Ppro_1942 hypothetical protein; SPTR: A1AQD1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807149.1" /db_xref="GI:302342620" /db_xref="GeneID:9493643" /translation="MMGATIPAGAWRGIVSRLALAALVLAVAGDCLAASLPDHFSTPE VHGFLELRTGCRTQSDPHEKDASVLETRLQAEASTQTDWAQFKFKGDVWYDGVLERAR YDTREAWMFLRPSEILDIKIGRQVLTWGTGDLVFLNDLFPKDWQSFFIGRDAEYLKTP SDSVKASLFWDFLNADFVFTPLFASDRFITGQYISYWNGALGRLAGNESELDFEKPNQ WFTDAEYAARLYQTVGAYELALYGYCGFWKNPGGVAASGEAIFPRLRVHGASVRGPLA GGIGNIEVAYYDSVDDPDGRDPRINNSEMRYLVGFAREIGRDCNASVQYYVEQQLDYQ QYRKTFTGEQPRDELRHVLTLQLTKLLMNQNLELSLSGYWSPSDRDAYLRPKILYKWT DNINQEIGANIFLGRRDDTMFGQYKADTNIYMSLRYSF" misc_feature complement(1336395..>1336691) /locus_tag="Deba_1187" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" gene complement(1337288..1338121) /locus_tag="Deba_1188" /db_xref="GeneID:9493644" CDS complement(1337288..1338121) /locus_tag="Deba_1188" /note="KEGG: ppd:Ppro_1941 hypothetical protein; SPTR: A1AQD0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807150.1" /db_xref="GI:302342621" /db_xref="GeneID:9493644" /translation="MKKICGLILMALGVFSVAGQCGAGEDAPPVETIIARSNHASLYQ GADAQGTTTMTITDKQGRTRKRQFNMMRKNTDAKDAEQKYFVYFIEPSDVRRMVFMVH KHVGEGKDDDRWLYMPSLDLVKRIAASDKRTSFVGSDFLYEDISGRGPEEDAHELLET TDSYFVVKNTPKNPDAVEFASYVAHIDKTTFLPMKIEYFKDDNRPYRVIEVMAVEPVE ATENGQRVVYPTVVRSVARDLESGGQTEMVFTRIRYNAGLTDDLFTERYLRRAPKEVM Q" misc_feature complement(<1337696..>1338010) /locus_tag="Deba_1188" /note="Protein of unknown function (DUF1329); Region: DUF1329; pfam07044" /db_xref="CDD:148578" gene complement(1338192..1340657) /locus_tag="Deba_1189" /db_xref="GeneID:9493645" CDS complement(1338192..1340657) /locus_tag="Deba_1189" /note="COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: ppd:Ppro_1940 RND efflux transporter; SPTR: A1AQC9 Exporters of the RND superfamily; PFAM: MMPL family" /codon_start=1 /transl_table=11 /product="exporter of the RND superfamily protein" /protein_id="YP_003807151.1" /db_xref="GI:302342622" /db_xref="GeneID:9493645" /translation="MKTPKTSLIDFAVNRSKWVAFGLLAIMVFFAMFFPNMTMDTDPE NMLEPTEPVRVFHNAAKKRFDLSDTIVVGVIKDNDPHGVFNPRTLAHVFELTRFAKTL RYEDPKHPGKTTGVIEVDMVAPSMVDHMRQAGPGTIAFEWLMRRPPTTEAEALAVRDK ALSNPLLVGQMVSADGKALCLYLPLTDKLLSYDVYTALREKIREFGDAEDWHIAGLPV AEGAIGVEMFSEMVIASPLAMVLIFGMLYAMFRRWSMVILPMLIATATVVATLGAMIA LGLPVHILSSMLPIFLMSISICDAIHVLSEFFDVYTAEKGRKESIKEVMNTLFMPMFY TSLTTAAGFFSFVTTDIPPARVFGAFVGVGVMFAWIITILFVPAYIMLLPERTLRDFG MAAHRGGRDSWLTRLLHRLGEIACQRSKVVLAVFLACTALSVWGMSQIAINDNYAKRF AVGHPIREADTALNRHFGGTYTASLVLDAKKGEEVFKRPDVLNYMAAMQTWLERNRYI GKSTSLADIVRKVHQELVDGRPENYRIPPTEGAVAECVMQYQQSHKPHDIWHFVTPEF DSANIFMQFQSGDSTRTEAAVKAIQSYIENNKPPVALSCQFAGLHYINYIFQGKMFWG MLGSLAGSYIIVLVMMTVLFRSVAWGFLCMIPMTLTIMFMYGALGFLGLDYDMPVAVL GAISLGIAVDFAIHFLERSRQITSQTGSWEKAAPRMFGEPARAISRNVIIIAFGFLPM LVAALVPYKTTGILLFSILIISGVVTLVLLPALLTVGRRWFFRARRFSTQGDAGASHD RPALVTVGIGAAKGGAADDAGRE" misc_feature complement(1338402..1340642) /locus_tag="Deba_1189" /note="Predicted exporters of the RND superfamily [General function prediction only]; Region: COG1033" /db_xref="CDD:31236" gene complement(1340723..1341187) /locus_tag="Deba_1190" /db_xref="GeneID:9493646" CDS complement(1340723..1341187) /locus_tag="Deba_1190" /note="InterPro IPR000835:IPR011991; KEGG: ppd:Ppro_1939 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: A1AQC8 Transcriptional regulator, MarR family; PFAM: MarR family" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator" /protein_id="YP_003807152.1" /db_xref="GI:302342623" /db_xref="GeneID:9493646" /translation="METKDDLIMATVRQLRVVVVKYARTEEMPIPVEEGVEVTTREAH TIEAVGNQKQMSVTDVANAFGITKSAASQMVSRLCRKGFLEKKQAPHSNKEFQLTLTP LGQKAFDAHERFHGQDRAALIERLRGFSLSHIATISVMLEAIGEVMDNRLSR" misc_feature complement(1340810..1341076) /locus_tag="Deba_1190" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(1341588..1342112) /locus_tag="Deba_1191" /db_xref="GeneID:9493647" CDS complement(1341588..1342112) /locus_tag="Deba_1191" /note="COGs: COG1335 amidase related to nicotinamidase; InterPro IPR003881:IPR000868; KEGG: dae:Dtox_2831 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: C8W1X5 Isochorismatase hydrolase; PFAM: Isochorismatase family" /codon_start=1 /transl_table=11 /product="isochorismatase hydrolase" /protein_id="YP_003807153.1" /db_xref="GI:302342624" /db_xref="GeneID:9493647" /translation="MNGRALLVIDMLHDFIDAAGALYCGDHAAAIVPEVRRLLQQHRQ EGSLIIFVADSHPVDDLEFRLFPPHCLTGTPGAAPLPGFEPLPGEYWLSKSRYSAFYG TELDDILRRRQINEVHLCGVCTSICVMETCSDLRNRDIKAVVHSQAVADFDQQAHAYA LQRMQKILGAHLEP" misc_feature complement(1341597..1342100) /locus_tag="Deba_1191" /note="Isochorismatase family; Region: Isochorismatase; pfam00857" /db_xref="CDD:189743" misc_feature complement(1341621..1342100) /locus_tag="Deba_1191" /note="Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cd00431" /db_xref="CDD:29548" misc_feature complement(order(1341732..1341734,1341831..1341833, 1342083..1342085)) /locus_tag="Deba_1191" /note="catalytic triad [active]" /db_xref="CDD:29548" misc_feature complement(1341744..1341749) /locus_tag="Deba_1191" /note="conserved cis-peptide bond; other site" /db_xref="CDD:29548" gene 1342348..1343574 /locus_tag="Deba_1192" /db_xref="GeneID:9493648" CDS 1342348..1343574 /locus_tag="Deba_1192" /note="KEGG: rpb:RPB_2177 hypothetical protein; SPTR: Q2IY27 Putative uncharacterized protein; PFAM: Secretory lipase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807154.1" /db_xref="GI:302342625" /db_xref="GeneID:9493648" /translation="MKKTFAIVLLACLALLRAVALAADLPVASAGLVRSESMGVYDVE RLNKILTEELGQFTTTKNTVVMPPARNAVKLYRIVYRTVTPEQGNRPVLASGLLAVPV VGQKKLPVVSYQHGTVFSKNEVPSHPEQSMETRLMIAQFAGNGYVVIGADYIGKGLSP EPDSYMVRESTAQACLDMLLAARQAMAGLGLEAAELFLSGWSQGAWSTMVFRNKLESL GVAVRAAATASTPSDLYLVVARWINNPSPLDADWLVGAVALLINSYENYYGLPGLSQA AIKEPYRQTARDFYENKIDWATAEKALPAKVAQLLDDDFAKASSLVANRFFRLLGDNQ AYRWRYLTPTRYYYGKSDEVLPPYVATAPVEFQKTLGGAPALAVCAGDAADHRGTFVF GVADQKAWFDQLRQAK" gene complement(1343615..1345411) /locus_tag="Deba_1193" /db_xref="GeneID:9493649" CDS complement(1343615..1345411) /locus_tag="Deba_1193" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: tgr:Tgr7_1963 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Q1NWX2 Chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003807155.1" /db_xref="GI:302342626" /db_xref="GeneID:9493649" /translation="MSSSGFSAWPIKWRIAAPLVLSSLLMAVLGGAYIYWQRMGALEQ AAMDGLAGRAVSVSEAIAARGRQALALAQFLAAQPAARQAVAARDPEALSRLTLSAFQ ESRGQLGMAQLQFHLPPATSLFRAHQPKKHGDDLSSFRQTVVQANRERRAVVGLEVGV GGAGIRGVAPIEEAGKHLGSVEFGAALDDGLLAEIKAGHGFDLAVLAPDGQGGFKPWA KTYQPSLGEDGDDALRAVLRTGLPAWRHVVQDGRETLVYLAALKDYQGRPVAVLGLPL DQSQALAQARREIWAGWGAAALLVLLLATISLLTARAIGNALRKVAGRLGESAQAVTS AAWRLGDSSRQLASQTSLQAAELEQAAAALEQVAGQGRANAQRTGQAAESCQQAAQAL ARAGTMIEQTVAAMERIKTTGDQTSQIVKAIDEIAFQTNLLALNAAVEAARAGEAGAG FAVVADEVRGLAHRAAQAAGDTQRLLTQSQEEINQGVTLASSAGQTFQQADRHNREMA ELVEALASAAQEQAAGVDQVTRAVASLENAVQANAGQAQDSAELSHGLKDRAGQMAEL AQGLQEMVLGGRHDAPASAESSAAVKALPSST" misc_feature complement(1343699..1344433) /locus_tag="Deba_1193" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature complement(1343699..1344226) /locus_tag="Deba_1193" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 1345701..1346522 /locus_tag="Deba_1194" /db_xref="GeneID:9493650" CDS 1345701..1346522 /locus_tag="Deba_1194" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: gvi:glr2042 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q7NIZ0 Glr2042 protein; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003807156.1" /db_xref="GI:302342627" /db_xref="GeneID:9493650" /translation="MSDAEAYLATGFKDVDANQDAAKLISCLSFLRSLPAVSAYKKRA LAGLRLEPGGVAADIGCGLGHDLPELAQGVGPGGVVVGVDSSGKLLAEARRTARHPAV WLLRCDAHRLALADASLDAVRADRTLQHVADPDRVIAEMIRALRPGGRLCCAEPDWPS FAIDCDDVATAALVAARWRGGFRNPDIGHKLAGKLRAAGLQGVWVEGYDLLAQGLEAV DAVYDIGATARLLAADDPPAARRLTSWLEGLARRDRAVSASVTVFVVGGRKPPTP" misc_feature 1345716..>1346186 /locus_tag="Deba_1194" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" misc_feature 1345800..1346510 /locus_tag="Deba_1194" /note="hypothetical protein; Provisional; Region: PRK08317" /db_xref="CDD:181382" gene 1346806..1347513 /locus_tag="Deba_1195" /db_xref="GeneID:9493651" CDS 1346806..1347513 /locus_tag="Deba_1195" /note="COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR003495:IPR012202; KEGG: ppd:Ppro_0345 cobalamin synthesis protein, P47K; PFAM: cobalamin synthesis protein P47K; SPTR: A1AKV9 Cobalamin synthesis protein, P47K; PFAM: CobW/HypB/UreG, nucleotide-binding domain" /codon_start=1 /transl_table=11 /product="cobalamin synthesis protein P47K" /protein_id="YP_003807157.1" /db_xref="GI:302342628" /db_xref="GeneID:9493651" /translation="MKLIIVAGPPSVGKTAVTTHVARLWRAKGARVLAAKFDTQSSAD PERYRQNLGAPSLGGLSGYLCPDHYFISNLEEVVEWGLGQRADVLFVETAGLCLRCAP HVEGVPAVTVIDALGGLDAPVKVGPMLSLADVVVLTKGDLVSQAEREVLMLGVRRVNP TALVLSVNGLTGTGGLLLLRWLMGQPAVDQVGERSLRHDMPASICSYCTGERRVGRVY QTGNVEKITWEAAEPCA" misc_feature 1346806..1347360 /locus_tag="Deba_1195" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene 1347504..1348256 /locus_tag="Deba_1196" /db_xref="GeneID:9493652" CDS 1347504..1348256 /locus_tag="Deba_1196" /note="COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mja:MJ0121 sn-glycerol-3-phosphate transport ATP-binding protein (UgpC); PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q57585 Uncharacterized ABC transporter ATP-binding protein MJ0121" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807158.1" /db_xref="GI:302342629" /db_xref="GeneID:9493652" /translation="MRVNQLEILGGQDRDGRPEPLASLRLRPGLTVAVVGPTGSGKSQ LLSDIEQLARGDTPSGRRVLLDGAQIDAPPTGLVATLSQRTNFVMDASVAKFIELHAA CLDKSGGDWAERVLSLANTLCGEAFGGDSPLQGLSGGQTRALMIADLALISDAPVVLI DEVENAGIDKHRALAALAGHGKIVLTATHDPVLMLMNDLRVVMAGGAMQQAIAIDDDE RLARQRLAELDATLLRARDLLRQGARLEKDSL" misc_feature 1347567..1348076 /locus_tag="Deba_1196" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1347570..1348112 /locus_tag="Deba_1196" /note="putative bacteriocin export ABC transporter, lactococcin 972 group; Region: L_ocin_972_ABC; TIGR03608" /db_xref="CDD:188353" misc_feature 1347609..1347632 /locus_tag="Deba_1196" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(1347618..1347623,1347627..1347635,1347750..1347752, 1347984..1347989,1348068..1348070) /locus_tag="Deba_1196" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 1347741..1347752 /locus_tag="Deba_1196" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 1347909..1347938 /locus_tag="Deba_1196" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 1347972..1347989 /locus_tag="Deba_1196" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 1347999..1348010 /locus_tag="Deba_1196" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 1348056..1348076 /locus_tag="Deba_1196" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene 1348253..1349164 /locus_tag="Deba_1197" /db_xref="GeneID:9493653" CDS 1348253..1349164 /locus_tag="Deba_1197" /note="KEGG: swo:Swol_1685 ABC-type Fe3+ transport system periplasmic component-like protein; SPTR: Q0AWC1 ABC-type Fe3+ transport system periplasmic component-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807159.1" /db_xref="GI:302342630" /db_xref="GeneID:9493653" /translation="MSTSYRVHLSVPPNIARHLRQEIAARFPGARIDGPPLHAEMHAF ARGLAREEPPALAISPYPQLAASVLAAASGTFVPLARDVAPLAPELDALGLTPPAPEL TLISVSPVALIANNRHLPELSDWADLCRPDLPAPLGCPPSDTPLPYLLEIFFSDRFGR AARPLLDTLDTQSNPLDINKRVDSGELAAGVILPALGRTFRLGGGRLVWPRSGALAIP MLACLSAQAPDEAHDIVAYLLSEQCQAFLSISGGLAPSRAGVPAFAELAACEWALIWP GWQTLLEVARIMDAAQGSTIDQREKGK" misc_feature 1348436..1349080 /locus_tag="Deba_1197" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1349161..1351158 /locus_tag="Deba_1198" /db_xref="GeneID:9493654" CDS 1349161..1351158 /locus_tag="Deba_1198" /note="COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531:IPR018181; KEGG: dat:HRM2_08940 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: C0QKD6 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor plug" /protein_id="YP_003807160.1" /db_xref="GI:302342631" /db_xref="GeneID:9493654" /translation="MKLKRSLLLAAVLALGLGVPAAHGDDTTQLDPIIVTARGRASQL SATPGGAAVADSDEIALHPKASAAYALEDIPGLSLTGDSVWGRDIAIRGLTGNSVVVL VDGHRINSAIDMNARLSFVNAMDIERIEVLKGPVSSLYGSGSTGGVVNIITRKGAFSD KCQAHGRVSLAASSNPQGGDAYASAHFDSPSLWLFASAAGQDHDDLRGGDDERIANSQ FRDGQGRVASGFKLGQLTTQVQVMRMEANDVGLPGGPSTLPAVARVSYPRTSSTLASL DLTWDREGQALGQVAGSIYINQNERRVRVDRTGNAAVSAIEPGADHETLGGQLRANLD LGAHAIVGGVDAWQWTMDSWRRRFLTVGRVLYDNPVPHAVQTSAGVFAEDDWTLSDAF TLNLGARLDRLQTKNDAGNGFASGDESDLGWNVHAGLTHKISQAWSQTAIIASSYRAA DVLERYKYIDLGGGQVLYGNPDLNPETSLFGEYGLHYQAKPFKGDLRLFANQLHDYIS QKRISATRLEMCNVGQARIFGAELEGRLDLGHGLALFANATALDGRDENADEPLRYIA PISGMAGVDFVTGPFWARLDTRWALDQNETPADVEETGGYATLNLAGRYRFAALGLNH ELLLTVDNILDTRYESYLSNARGIELLEPGVAAALTYTLEF" misc_feature 1349248..1351089 /locus_tag="Deba_1198" /note="TonB-dependent heme/hemoglobin receptor family protein; Region: TonB-hemin; TIGR01785" /db_xref="CDD:162536" misc_feature 1349317..1351155 /locus_tag="Deba_1198" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1349317..1349337,1349365..1349394,1349425..1349442, 1349461..1349484,1349527..1349559,1349593..1349619) /locus_tag="Deba_1198" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature 1350073..1350075 /locus_tag="Deba_1198" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1351163..1352179 /locus_tag="Deba_1199" /db_xref="GeneID:9493655" CDS 1351163..1352179 /locus_tag="Deba_1199" /note="KEGG: pca:Pcar_0857 ABC-type transport system, periplasmic component; SPTR: Q3A695 ABC-type transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="ABC transporter periplasmic protien" /protein_id="YP_003807161.1" /db_xref="GI:302342632" /db_xref="GeneID:9493655" /translation="MRRAVFSVIVILAVGGLGAFYLFSDRAASPTAEQGPDAPPRLVF YTSFGATTPQIPFWGAVKAGWPGGAGLETRLWKDLDDLRGVIMAGRGDIWLGHSEGLA QAALRGAPVCFLAVTGWRKFYFLSADPAAVDLASLATLSQAQNSPLMVTPPDSPAMAI LDDVAARGGPRFVTAPHAPRQLALLALRGQARHILAPEPLVSLLLTKAPGLRVVASLE DEHAKLTGGPARLPIAGLAMHGELARRRPELARQLLAAMERVAADLADDPAAGLALLP PEVAGELGPDVLRLSLSRDMIMTRPTAQVRQEVLAYLRLVMSPADRQRLDQLPEGFWG PPAP" gene 1352176..1352934 /locus_tag="Deba_1200" /db_xref="GeneID:9493656" CDS 1352176..1352934 /locus_tag="Deba_1200" /note="COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: pca:Pcar_0856 ABC-type transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q3A696 ABC-type transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component" /codon_start=1 /transl_table=11 /product="nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein" /protein_id="YP_003807162.1" /db_xref="GI:302342633" /db_xref="GeneID:9493656" /translation="MKRLWPFAVSLAVMLALGWLATWLLGPELAPPPPLVCAEMWRLC LDGQMFGEMGATVVRALAGVAAANLLGLGLGLAAGLWPAALRALAPLVAALQACPPVV WISLAMIWAGTGSLVPMLAVFAATLPPLFLNVAQGVLALDRRLFDMSRLYDVPAATRL RRFWLPGVRPYWLAAFSQTLASGWKVAAVAEFLGSHQGAGARIFWAYRRMDLVDLYAW TGALVLLGVVLEYGLVAPLRQAAGRNGRKKEAVS" misc_feature <1352485..>1352775 /locus_tag="Deba_1200" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 1352931..1353533 /locus_tag="Deba_1201" /db_xref="GeneID:9493657" CDS 1352931..1353533 /locus_tag="Deba_1201" /note="COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: pca:Pcar_0855 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q3A697 ABC-type transport system, ATPase component; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807163.1" /db_xref="GI:302342634" /db_xref="GeneID:9493657" /translation="MIELRGVSKRLGRKLVIRRADLVVRPGQIVCLSGPSGVGKTTLL EIMAGLTKPDAGLARRQGAVALAFQDDALLPWLDAAGNMDYALAALPPDQRRERRRFW LERFELPPTLRPEAMSGGMRRRLNLARALASQRPILLLDEPFAFLDLPWQAKVAAELA AAAHVGAAVALVSHQLEPLDGLPCRTIAVSASPVDIVADA" misc_feature 1352931..1353500 /locus_tag="Deba_1201" /note="Predicted ATPase involved in cell division [Cell division and chromosome partitioning]; Region: FtsE; COG2884" /db_xref="CDD:32710" misc_feature 1352934..>1353374 /locus_tag="Deba_1201" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1353030..1353053 /locus_tag="Deba_1201" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(1353039..1353044,1353048..1353056,1353135..1353137, 1353351..1353356) /locus_tag="Deba_1201" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 1353126..1353137 /locus_tag="Deba_1201" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 1353279..1353308 /locus_tag="Deba_1201" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 1353339..1353356 /locus_tag="Deba_1201" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 1353363..1353374 /locus_tag="Deba_1201" /note="D-loop; other site" /db_xref="CDD:72971" gene 1353723..1355219 /locus_tag="Deba_1202" /db_xref="GeneID:9493658" CDS 1353723..1355219 /locus_tag="Deba_1202" /note="COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR016040:IPR006153:IPR006037; KEGG: dge:Dgeo_0222 potassium/proton antiporter; PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; SPTR: Q1J1V9 Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family; TrkA-C domain" /codon_start=1 /transl_table=11 /product="sodium/hydrogen exchanger" /protein_id="YP_003807164.1" /db_xref="GI:302342635" /db_xref="GeneID:9493658" /translation="MDFTLALGVTGFLLLLSVFASKLSERVGVPALLLFLGLGMLAGV DGPGGIQFDDAQLTNAVGALALTFILFDGGFNTRWSSARPVLLTGTILSTLGVMLTCG FMAAFAHWAMGLPLETALLLGAIVSSTDAPAVFAILGGKSLGLKGRLKPLLEFESGSN DPTAVFLTLGVLEVLINPQPAAHWGVLLGKFVAQMVLGAALGLAMGWLATRALRKVRL DYEGLYPVFGVCVALICYSLTAYAHGNGFLAVYICGMVMGNGDYLYKRSLNKFLDALS WIMQIGMFLVLGLLVNPRDLGEVALTGLSASLFLMLAARPAAVLLAMLGSGYSLREQL FVAWTGLKGAAPIILATYPLMAGYDQGHFLFNLIFFLVLTSVLLQGKTLPLAARLLKV DRPFQPDPSYPLEFNRTFMGSDNTQDVAIEPGAAIIGRQVRELGLPKGVLILLIHRDG NFLVATGETALEAGDNLLLYGPKNDLRAAQAILLRACRSGQDGVCPED" misc_feature 1353771..1355171 /locus_tag="Deba_1202" /note="potassium/proton antiporter; Reviewed; Region: PRK05326" /db_xref="CDD:180017" misc_feature 1354977..1355171 /locus_tag="Deba_1202" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(1355541..1356356) /locus_tag="Deba_1203" /db_xref="GeneID:9493659" CDS complement(1355541..1356356) /locus_tag="Deba_1203" /note="KEGG: dsa:Desal_1384 hypothetical protein; SPTR: C6BRK6 Putative uncharacterized protein; PFAM: Uncharacterised ArCR, COG2043" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807165.1" /db_xref="GI:302342636" /db_xref="GeneID:9493659" /translation="MDSVIVNSLNPEFDPVAVVWSDTIPADAFQYKNGKFGCVLYLFA EASTCGRIAGGSRESIICTGGRAALGFGTDFDASDEQLDLHAALFSKGIKSAYNRTAY QAEMDAVPKNWRSMYEYGERRHCSAELAREWILHEFPRYDIPSKYVLFKPLSSTDSDE NVRAIIFPVNPDELSGLVTLAGSVMQGTDPVRAPQGTDCCSIAAFAYAESESAVPRAV LGMMGADGREVMHRRFRKDILTLTLPAPLFLKMEQEAGDCLFQIPSWKKLFGH" misc_feature complement(1355601..1356350) /locus_tag="Deba_1203" /note="Uncharacterised ArCR, COG2043; Region: DUF169; cl00894" /db_xref="CDD:193970" gene complement(1356442..1356771) /locus_tag="Deba_1204" /db_xref="GeneID:9493660" CDS complement(1356442..1356771) /locus_tag="Deba_1204" /note="COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: bbr:BB3914 membrane transport protein; PFAM: small multidrug resistance protein; SPTR: C0N1Z3 Multidrug resistance protein, SMR family; manually curated; PFAM: Small Multidrug Resistance protein" /codon_start=1 /transl_table=11 /product="small multidrug resistance protein" /protein_id="YP_003807166.1" /db_xref="GI:302342637" /db_xref="GeneID:9493660" /translation="MGYVYLSIAIFAEIVGTSALKTSQGFTILVPSIIAIVGYGASLY FLSLVLGIMPVGIAYAIWSGIGITLITMIGAIWFNQIPDIPAIIGMLMIMSGVVIINV FSKTVSR" misc_feature complement(1356454..1356765) /locus_tag="Deba_1204" /note="Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910" /db_xref="CDD:186252" gene complement(1357247..1357321) /locus_tag="Deba_R0023" /db_xref="GeneID:9493661" tRNA complement(1357247..1357321) /locus_tag="Deba_R0023" /product="tRNA-Val" /db_xref="GeneID:9493661" gene complement(1357312..1358127) /locus_tag="Deba_1205" /db_xref="GeneID:9493662" CDS complement(1357312..1358127) /locus_tag="Deba_1205" /note="COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterProIPR020103:IPR002942:IPR006145:IPR018496:IPR 000748; KEGG: adg:Adeg_1292 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: C9R7X1 Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase family" /codon_start=1 /transl_table=11 /product="pseudouridine synthase" /protein_id="YP_003807167.1" /db_xref="GI:302342638" /db_xref="GeneID:9493662" /translation="MAEERLQKILARAGVASRRAAEELIAAGRVAVDGQIVRQPGHKA DPDTQSIAIDGKPIARAEAKEYWLAHKPAGYVSTVHDPQGRPRVLDLLPPEIRARLYP VGRLDLDSEGLMLLTNDGDLALRLTHPRYGVPKTYRVWLSGRPNRADLEALRAGVEIE GRQTAPAMITVKAAADGHSKVSMVLREGRKREIKLMWKARGLNVIRLVRVGLGPLRLG DLPPGAVRRLSPAEIQALRRQCHALSGCKDSADGVQKSARGARNAPSKKSTGR" misc_feature complement(1357408..1358121) /locus_tag="Deba_1205" /note="16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187" /db_xref="CDD:31380" misc_feature complement(1357933..1358118) /locus_tag="Deba_1205" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature complement(order(1357993..1357995,1357999..1358022, 1358041..1358043,1358047..1358052,1358059..1358064, 1358068..1358073,1358077..1358082,1358113..1358115)) /locus_tag="Deba_1205" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature complement(1357522..1357932) /locus_tag="Deba_1205" /note="Pseudouridine synthases are responsible for the synthesis of pseudouridine from uracil in ribosomal RNA. The RsuA subfamily includes Pseudouridine Synthase similar to Ribosomal small subunit pseudouridine 516 synthase. Most of the proteins in this...; Region: PseudoU_synth_RsuA_like; cd02870" /db_xref="CDD:30030" misc_feature complement(order(1357546..1357548,1357807..1357818)) /locus_tag="Deba_1205" /note="active site" /db_xref="CDD:30030" gene complement(1358130..1358753) /locus_tag="Deba_1206" /db_xref="GeneID:9493663" CDS complement(1358130..1358753) /locus_tag="Deba_1206" /note="COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234:IPR011991; KEGG: dal:Dalk_5225 chromosome segregation and condensation protein, ScpB; PFAM: chromosome segregation and condensation protein ScpB; SPTR: B8FEB4 Chromosome segregation and condensation protein, ScpB; TIGRFAM: segregation and condensation protein B; PFAM: Putative transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B" /codon_start=1 /transl_table=11 /product="chromosome segregation and condensation protein, ScpB" /protein_id="YP_003807168.1" /db_xref="GI:302342639" /db_xref="GeneID:9493663" /translation="MTPSLKCIIEGMLFVAEAPLSLEQLAQALEPTSREDIQTAIDQL RAEYQAMGRAFDLAQVAGGHIFRTRPELAPWLGRLRRTQASRLSRAALETLAIVAYKQ PVMKVEIERIRGVEVGGVLRMLMERNLVRVAGRRDLPGRPLVYATTKRFLEFFDLKDL SELPTLEEIDKLSAEPDQAVEAAQRSLEFPNPTPTGEHDGSAEPRED" misc_feature complement(1358256..1358732) /locus_tag="Deba_1206" /note="Putative transcriptional regulators (Ypuh-like); Region: DUF387; cl00612" /db_xref="CDD:186106" gene complement(1358750..1359529) /locus_tag="Deba_1207" /db_xref="GeneID:9493664" CDS complement(1358750..1359529) /locus_tag="Deba_1207" /note="COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: gbm:Gbem_2297 chromosome segregation and condensation protein ScpA; PFAM: chromosome segregation and condensation protein ScpA; SPTR: Q74C43 Putative uncharacterized protein; PFAM: ScpA/B protein" /codon_start=1 /transl_table=11 /product="chromosome segregation and condensation protein ScpA" /protein_id="YP_003807169.1" /db_xref="GI:302342640" /db_xref="GeneID:9493664" /translation="MDVAVRLEIFEGPIDLLLHLIRKNEVDIHDIPVAMITRQYLEYL GLMRELNIAVAGEFLVMASTLTHIKSRMLLPALRDQPDEEDPDDPRQDLVQQLRQHMS IKLAAETLQGRNWLDRDVFQRAAASQELDAAAKARPQDLVAAGVFDLIEAFRQLIAAR GRQLVLDLPLARVSLEDRMSDLLSMLRRRQSLTFEECFAGDLDKSHMVVTFLAILELT RMGLLRVYQSRAPQPDEQPAAWSALRVFARDIDEEAEEAAP" misc_feature complement(1358843..1359517) /locus_tag="Deba_1207" /note="ScpA/B protein; Region: ScpA_ScpB; cl00598" /db_xref="CDD:186098" gene complement(1359538..1360212) /locus_tag="Deba_1208" /db_xref="GeneID:9493665" CDS complement(1359538..1360212) /locus_tag="Deba_1208" /note="COGs: COG1994 Zn-dependent protease; InterPro IPR008915; KEGG: dps:DP0062 hypothetical protein; PFAM: peptidase M50; SPTR: Q6ASD4 Conserved hypothetical membrane protein; PFAM: peptidase family M50" /codon_start=1 /transl_table=11 /product="peptidase M50" /protein_id="YP_003807170.1" /db_xref="GI:302342641" /db_xref="GeneID:9493665" /translation="MMDTALDFILKVIVLAPPILMALTVHEASHGYAAYHFGDPTAKR LGRLTLNPLRHLDPAGTLFFFVTAMLGSGFGWAKPVPVDPGRFKRPRQDMMWVSAAGP AANLLFAVACAAALRAMLALGLSQESLAQGLVLRMLVYGVFINVILALFNMIPLPPLD GSGVLGGLLPPRAAAEYQRRLGRYGFAILLALLFLPALIPGFPDLIGSLIVPAAAWLT DLLLGF" misc_feature complement(1359676..1360179) /locus_tag="Deba_1208" /note="Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the...; Region: S2P-M50_like_1; cd06158" /db_xref="CDD:100079" misc_feature complement(order(1359733..1359735,1359757..1359759, 1360123..1360125,1360132..1360137)) /locus_tag="Deba_1208" /note="active site" /db_xref="CDD:100079" misc_feature complement(1359748..1359759) /locus_tag="Deba_1208" /note="putative substrate binding region [chemical binding]; other site" /db_xref="CDD:100079" gene complement(1360209..1362890) /locus_tag="Deba_1209" /db_xref="GeneID:9493666" CDS complement(1360209..1362890) /locus_tag="Deba_1209" /note="COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR001667:IPR003156:IPR000644:IPR002646; KEGG: sfu:Sfum_0679 polynucleotide adenylyltransferase region; PFAM: polynucleotide adenylyltransferase region; CBS domain containing protein; phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SMART: CBS domain containing protein; SPTR: A0LG26 polynucleotide adenylyltransferase region; PFAM: DHH family; DHHA1 domain; CBS domain; poly A polymerase head domain" /codon_start=1 /transl_table=11 /product="polynucleotide adenylyltransferase region" /protein_id="YP_003807171.1" /db_xref="GI:302342642" /db_xref="GeneID:9493666" /translation="MDQQNASAIQRDVEVITTHVNADFDALASMLAAAKLYPEAMLAL PGAQERNLRNFYVESVCFMFNFVKVKQVPFERVKRLILVDTRRLDRIGPFAKLAEDPE VEIIAYDHHPDSDQDVRAHWQQVRKIGATVSLLCEHLRENNVELSDDEATILALGIYE DTGSFTFVSTTPEDYHAAAWLLGQGANLSVVSELITRELTAEEVGLLNDLIHGAEPLN ISGVQVIVTEVSREGYFPELAALVHKFMEMENHDAVFALARMEGRVYLVARSRLHEVD AGVIAKALGGGGHPSAASATLRDMTLVEARAKLEMALHTHINPSISARELMTSPVISA PPQLLLRELPERFTRYDINVMPVVDGQDILGVITRQDVEKAVYHGLGDLAVREYMTPG VKPVAPDAPLLEVEKALLEQRFRLVPVMENGEMIGVITRTDLLNTLLERPLISESIGE GEAAPQTIRHKNIANLLHERLPKPVVTILQQMGKVGDDLGEDVYLVGGSVRDLFLRSD HLDIDVVVEGDAIEFARAFAQGRDDLRLRTHKKFNTAKLLFDSGLTMDLATARLEYYM SPAALPVVEHSSVKLDLYRRDFTINTMAVRLNGRQFGLLIDFFEAMRDIKEKVIRVLH NLSFVEDPTRVFRAIRFEQRFGFRIGKLTEALIKNAIKIDAFRRLTGSRLFGELKHIL EEESVTPAIERLNEFKLLRVFHPALQLTAKQLELLDQAEETLAWYRLSFIDKPLRRWL LYFLALADGLDEQQMTELCQRLGFAPKLREEITEMRAKALRCVNVLQRRAARPSQTFE LLRPLGLEFQLLVMAKTSKDYAKKAVSQYLTTMVRVRPELGGQDLKAMGYLPGPLYKQ ILDTLLAARLDGQVQTRQDEIDLVENRFGQRKGELSY" misc_feature complement(1362414..1362848) /locus_tag="Deba_1209" /note="DHH family; Region: DHH; pfam01368" /db_xref="CDD:189957" misc_feature complement(1361994..1362140) /locus_tag="Deba_1209" /note="DHHA1 domain; Region: DHHA1; pfam02272" /db_xref="CDD:190268" misc_feature complement(1361586..1361921) /locus_tag="Deba_1209" /note="FOG: CBS domain [General function prediction only]; Region: COG0517" /db_xref="CDD:30863" misc_feature complement(1361580..1361909) /locus_tag="Deba_1209" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally...; Region: CBS_pair_DHH_polyA_Pol_assoc; cd04595" /db_xref="CDD:73095" misc_feature complement(1360260..1361507) /locus_tag="Deba_1209" /note="tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]; Region: PcnB; COG0617" /db_xref="CDD:30962" misc_feature complement(1361040..1361477) /locus_tag="Deba_1209" /note="Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398" /db_xref="CDD:143388" misc_feature complement(order(1361118..1361120,1361127..1361138, 1361208..1361210,1361223..1361225,1361265..1361267, 1361352..1361354,1361358..1361360,1361385..1361390, 1361397..1361402)) /locus_tag="Deba_1209" /note="active site" /db_xref="CDD:143388" misc_feature complement(order(1361118..1361120,1361130..1361138, 1361352..1361354,1361358..1361360,1361388..1361390, 1361397..1361402)) /locus_tag="Deba_1209" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143388" misc_feature complement(order(1361223..1361225,1361352..1361354, 1361358..1361360)) /locus_tag="Deba_1209" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143388" gene complement(1362899..1363834) /locus_tag="Deba_1210" /db_xref="GeneID:9493667" CDS complement(1362899..1363834) /locus_tag="Deba_1210" /note="COGs: COG4974 Site-specific recombinase XerD; InterProIPR011010:IPR010998:IPR004107:IPR002104:IPR 013762:IPR011932; KEGG: sfu:Sfum_0678 tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: A0LG25 Tyrosine recombinase XerD subunit; TIGRFAM: tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD" /codon_start=1 /transl_table=11 /product="tyrosine recombinase XerD" /protein_id="YP_003807172.1" /db_xref="GI:302342643" /db_xref="GeneID:9493667" /translation="MSQARPSSQPPAALPLHGMVDVYLDHLAGERGLARNTLAAYADD LADICGFLHDNGVQGWEQVDELHMVAYLAHAAKEGLAANSRARRLSAARGLVGYLLRR EKLSADPLATLRGPKKTAGLPHFLSQEEMLRLLETPAADSDLGRRDRAMLEAMYGAGL RVSEVIDLGVGQIQFQIGCLLVRGKGAKERLVPLHQVAIQRLEDYLRGPRQNLLRGQK ASDTVFLNARGGKLSRMGVWKILAKHVAAAGIDHHVSPHTLRHTFATHLLEGGADLRS VQLMLGHADIGTTQIYTHLGMKRLVDVHRQCHPRG" misc_feature complement(1362923..1363777) /locus_tag="Deba_1210" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(1362902..1363768) /locus_tag="Deba_1210" /note="tyrosine recombinase XerD; Region: recomb_XerD; TIGR02225" /db_xref="CDD:162772" misc_feature complement(order(1362959..1362961,1363064..1363072, 1363280..1363282,1363349..1363354)) /locus_tag="Deba_1210" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature complement(order(1362959..1362961,1362986..1362988, 1363055..1363057,1363064..1363066,1363280..1363282, 1363352..1363354)) /locus_tag="Deba_1210" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature complement(order(1362959..1362961,1362986..1362988, 1363055..1363057,1363064..1363066,1363352..1363354)) /locus_tag="Deba_1210" /note="active site" /db_xref="CDD:29495" gene complement(1363831..1364928) /locus_tag="Deba_1211" /db_xref="GeneID:9493668" CDS complement(1363831..1364928) /locus_tag="Deba_1211" /note="COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR001714:IPR000994:IPR000587; KEGG: sfu:Sfum_0169 peptidase M24; PFAM: peptidase M24; creatinase; SPTR: Q1NY97 peptidase M24; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain" /codon_start=1 /transl_table=11 /product="peptidase M24" /protein_id="YP_003807173.1" /db_xref="GI:302342644" /db_xref="GeneID:9493668" /translation="MIKKRLSKLRALMARQGLDAMLITLPANRRYLSGFSPDDTQLGE SSGALLIAPAAAVLLTDFRYRLTAQAQAPCFEVVVYSRGLAHSLGVLLNELRVKRLGF EAEALLFGQHQRLSEALPGVSWQPTLGFVSELRKFKDASEIKATEASLALMEAVLAQV MAGPLVGRSEREVALEIVRRIEDAGGEGPAFPPIVASGPNAAEPHAEPGPRVIAHGET VLFDVGAKVDGYCSDISRTIVAGGRAADDEQFRRVYATVRQAQLEALDGILPGMLGHE ADAIARRIIDRAGFKGKFGHSLGHGVGLATHEAPSLGPNSDDMLEEGMVFTIEPGIYL SGWGGVRLEVMAVMEATGCRLLGASEGFLQP" misc_feature complement(1363849..1364928) /locus_tag="Deba_1211" /note="Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006" /db_xref="CDD:30356" misc_feature complement(1364524..1364916) /locus_tag="Deba_1211" /note="Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321" /db_xref="CDD:189940" misc_feature complement(1363870..1364502) /locus_tag="Deba_1211" /note="Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline; Region: APP-like; cd01092" /db_xref="CDD:29977" misc_feature complement(order(1363900..1363902,1363942..1363944, 1364029..1364031,1364230..1364232,1364263..1364265, 1364314..1364316)) /locus_tag="Deba_1211" /note="active site" /db_xref="CDD:29977" gene 1365090..1366520 /locus_tag="Deba_1212" /db_xref="GeneID:9493669" CDS 1365090..1366520 /locus_tag="Deba_1212" /note="COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterPro IPR002078:IPR003593; KEGG: aav:Aave_0172 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; SMART: ATPase AAA; SPTR: A1TIJ6 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator" /protein_id="YP_003807174.1" /db_xref="GI:302342645" /db_xref="GeneID:9493669" /translation="MDRRQLFRQAAADMLALDLAGRPRARRAGVAEAVRPEDHAGQVA PETAQALRVLARAVVDAVLATPRQGLDAAEAARIIEAAAREHLPTQAGPAQAWRAKLA GRIPTLLDLPRLAELAASGLCLPPLAVVRQTAADVAMVGGRSPEFAELLAKVERLAGI DLPVALEGETGTGKELIARRLHQLSPRRQGPFLAVNCAAVPEALVESELFGHEKGAFT GADKPRLGHMRAAKGGTLFLDEINEASPVFQRKLLRALDQMAVLPLGASRTEALDFRL ITASSENLAQAVEDGRFSRPLFYRLQVLWLELPPLRRRLEDLPALIEHFRGQACLAAK CTRRLGPEALAALLAHDWPGNVRQLRNVVMRAVALAPRFEIGLDDLPPDLRPARAPRQ AAGLQRRLSQLGGSLAAKAPVLATLLHARRGDFLFNKDLREALDVSDSTAKGLLRELA EAGLVQASGQRGGRRYLVDFSEDKEE" misc_feature 1365510..1365995 /locus_tag="Deba_1212" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1365576..1365992 /locus_tag="Deba_1212" /note="ATPases associated with a variety of cellular activities; Region: AAA; smart00382" /db_xref="CDD:128665" misc_feature 1365591..1365614 /locus_tag="Deba_1212" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1365594..1365617,1365804..1365806,1365930..1365932) /locus_tag="Deba_1212" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1365792..1365809 /locus_tag="Deba_1212" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1365987..1365989 /locus_tag="Deba_1212" /note="arginine finger; other site" /db_xref="CDD:99707" gene 1366523..1367335 /locus_tag="Deba_1213" /db_xref="GeneID:9493670" CDS 1366523..1367335 /locus_tag="Deba_1213" /EC_number="1.5.1.2" /note="COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455:IPR000304:IPR016040; KEGG: pth:PTH_1826 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: A5D185 Pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase" /codon_start=1 /transl_table=11 /product="pyrroline-5-carboxylate reductase" /protein_id="YP_003807175.1" /db_xref="GI:302342646" /db_xref="GeneID:9493670" /translation="MAIEGRLGLVGGGNMGAALLGGLLAKAVIEPGRVVVVEKDAAKA AALGERFGVETRAELAAMGRVNVAILAIKPADVAACAKALGPLVGEGGLVISLAAGVS SQTVAAELPPNLAVVRAMPNTPALIGRGATAICPGRGADAAAMQTAATIFEAAGRVVV VAERQMEAVTGLSGSGPGYVYLIIEALADAGVRLGLDRPTALSLAAATVGGSAEMVMR SGQHPAALKDQVTSPGGTTMAGLAVLERAGLRGLLMDAVAAAAARGAELAGK" misc_feature 1366667..1367272 /locus_tag="Deba_1213" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(1367421..1368290) /locus_tag="Deba_1214" /db_xref="GeneID:9493671" CDS complement(1367421..1368290) /locus_tag="Deba_1214" /note="COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: glo:Glov_2032 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B3E3C9 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_003807176.1" /db_xref="GI:302342647" /db_xref="GeneID:9493671" /translation="MTPPPGNHDRESAWGSFWRAIRANRLAMAGLLVVLTLLFVAAAA PLLTPHDPFRIDVDAVLLPPSWSHPFGTDDLGRDVLSRMIMGSRVSLQVGLVSAGIAT LLGAALGALAGYYGGWVDGLIMRLTDMMLCFPTFFLILAVIAILDPSIANIMAVIGLT SWMGVARMVRAEFLTLKEREFVLAAKAMGAGDMRIIFRHILPNAMAPVLVAATLGVAG AILTESGLSFLGLGVQPPDPSWGNILGQGKSYIELGWWLSAFPGLAILITVLGYNLLG EGVRDALDPRLRR" misc_feature complement(1367439..1368149) /locus_tag="Deba_1214" /note="nickel ABC transporter, permease subunit NikC; Region: nickel_nikC; TIGR02790" /db_xref="CDD:131837" misc_feature complement(1367484..1368029) /locus_tag="Deba_1214" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1367490..1367495,1367502..1367507, 1367511..1367516,1367523..1367528,1367562..1367567, 1367607..1367612,1367619..1367630,1367649..1367651, 1367658..1367663,1367703..1367705,1367754..1367756, 1367763..1367768,1367778..1367780,1367784..1367789, 1367796..1367798,1367802..1367804,1367808..1367813, 1367862..1367864,1367868..1367873,1367880..1367909, 1367913..1367924,1367952..1367954,1367967..1367972, 1367979..1367984)) /locus_tag="Deba_1214" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1367613..1367630,1367862..1367906)) /locus_tag="Deba_1214" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1367526..1367528,1367562..1367564, 1367571..1367573,1367610..1367612,1367826..1367828, 1367862..1367864)) /locus_tag="Deba_1214" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1367682..1367684,1367694..1367699, 1367715..1367753)) /locus_tag="Deba_1214" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1368287..1369264) /locus_tag="Deba_1215" /db_xref="GeneID:9493672" CDS complement(1368287..1369264) /locus_tag="Deba_1215" /note="COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: sat:SYN_01341 oligopeptide transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C6MN67 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_003807177.1" /db_xref="GI:302342648" /db_xref="GeneID:9493672" /translation="MALFLLKRLLGMIPLLIGITFLSFVVMHLAPGSPTDLASDLNPK LSQIAQQRLIELYGLDKPIAEQYWTWLKRLAVLDFGQSFAPDGRPVLDKIAERLPVTI GINLLSMLFIIVLAVPIGVYSATHRGSLFDQATTVFVFVGFATPTFWLALLCMILFGV NLGWLPISGVESINHDQLDFWGRLADYARHLAMPVILSAFGGLAGMSRYMRGNMLEVI GQDYITTARAKGLAERVVIYRHALRNALMPLVTILGLSLPGLIGGSVIFESIFAIPGL GKLFYDAVMARDYPLVMGGLVIGAALTLVGNLLADLGYALVDPRVRTEK" misc_feature complement(1368290..1369264) /locus_tag="Deba_1215" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" misc_feature complement(1368329..1368973) /locus_tag="Deba_1215" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1368329..1368334,1368341..1368346, 1368353..1368358,1368362..1368367,1368374..1368379, 1368428..1368433,1368458..1368463,1368470..1368481, 1368500..1368502,1368509..1368514,1368554..1368556, 1368605..1368607,1368614..1368619,1368629..1368631, 1368635..1368640,1368647..1368649,1368653..1368655, 1368659..1368664,1368800..1368802,1368806..1368811, 1368818..1368847,1368851..1368862,1368893..1368895, 1368908..1368913,1368920..1368925)) /locus_tag="Deba_1215" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1368464..1368481,1368800..1368844)) /locus_tag="Deba_1215" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1368377..1368379,1368428..1368430, 1368437..1368439,1368461..1368463,1368677..1368679, 1368800..1368802)) /locus_tag="Deba_1215" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1368533..1368535,1368545..1368550, 1368566..1368604)) /locus_tag="Deba_1215" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1369269..1370867) /locus_tag="Deba_1216" /db_xref="GeneID:9493673" CDS complement(1369269..1370867) /locus_tag="Deba_1216" /note="COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: sat:SYN_00608 oligopeptide-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: Q2LVZ1 Oligopeptide-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_003807178.1" /db_xref="GI:302342649" /db_xref="GeneID:9493673" /translation="MKRLLLGLAALIALFFLGLNAWSGQTPSYGDRIVIGTIGDATSM IPMITSDSASHEMSAYCYNGLIKYDKDLNIVGDLAQSWDISPDGLTITFHLRRGVKFH DGHEYTSRDALFNYQFMVDPKTPTPYGGDYLKVVKAEAPDPYTFRVSYKEPFAPALAS WSLSQMPAHLLEGQDPRTSPLGRAPVGTGPYRFGRWLPGARVELNYFADYFEGRPYLD GLIFRVIPDDSTLFLELMSGGIDWMVLSPLKYQRQTDTPFFQKNFRKYKYLSSSYTYV AYNLKDPRFQDVRVRRALAHAIDVEEIIKGVLLGLGQPATGPYKPGTYWHNPNVRRYP FDPAKARQLLAQAGWRDSDGDGWLDKGGERFEFALLTNQGNKNRENSAVIIQHRLAQI GVKVTPRTIEWAAFINDFINKGRFEAVLLAWTMTPDPDLYDVWHSDQIGKLNFTFYKN AELDKLLEQGRQTFDRAKRKQIYDRAQEILAEDQPYTFLYVPDALPVVQSRFHGIEPA PAGISYNFIRWWVPKNLQRPTMER" misc_feature complement(1369299..1370810) /locus_tag="Deba_1216" /note="ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747" /db_xref="CDD:31090" misc_feature complement(1369344..1370774) /locus_tag="Deba_1216" /note="The substrate-binding component of the oligopeptide-binding protein, AppA, from Bacillus subtilis contains the type 2 periplasmic-binding fold; Region: PBP2_AppA_like; cd08514" /db_xref="CDD:173879" misc_feature complement(order(1369392..1369394,1369398..1369400, 1369566..1369568,1369599..1369604,1369635..1369640, 1369659..1369661,1369752..1369754,1370046..1370048, 1370058..1370060,1370136..1370138,1370388..1370393, 1370703..1370705)) /locus_tag="Deba_1216" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:173879" gene 1371246..1371770 /locus_tag="Deba_1217" /db_xref="GeneID:9493674" CDS 1371246..1371770 /locus_tag="Deba_1217" /note="COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: gsu:GSU2525 nitroreductase family protein; PFAM: nitroreductase; SPTR: Q74A65 Nitroreductase family protein; PFAM: Nitroreductase family" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_003807179.1" /db_xref="GI:302342650" /db_xref="GeneID:9493674" /translation="MDADQLLELIKTRRSVRRFAAEAPEAGQVAMILEAGRWAPSGQN NQPWRFVVVADAQTRGRLAQLTHYGKIIENAPLCIGVFSHKPSQYHQIKDAQAVGACL QNMLLMAHALGLGAVWLGEILKNAEQARQVLGLSDDLELMAVVALGRPAGPAKATERL ELSELVAESYPAQP" misc_feature 1371264..1371755 /locus_tag="Deba_1217" /note="NAD(P)H:flavin oxidoreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes...; Region: NADPH_oxidoreductase_1; cd02150" /db_xref="CDD:48395" misc_feature order(1371282..1371284,1371288..1371290,1371294..1371296, 1371372..1371374,1371603..1371608) /locus_tag="Deba_1217" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:48395" gene 1371788..1372213 /locus_tag="Deba_1218" /db_xref="GeneID:9493675" CDS 1371788..1372213 /locus_tag="Deba_1218" /note="KEGG: dal:Dalk_4409 lipoprotein; SPTR: B8FNB9 Putative lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_003807180.1" /db_xref="GI:302342651" /db_xref="GeneID:9493675" /translation="MKPSKLMMMGLIVLTMAFGSACSLTSQNAGANDASGESMSRYYD FDDVQVPSELKLDTGRSNVVRVADFKAGQLVLSGNLERESLTNYFLESMAKDNWSLKG SVKYPLVQLFFAKTGKAAMVRITEKTFSTEVEIWVLPSL" gene 1372224..1373435 /locus_tag="Deba_1219" /db_xref="GeneID:9493676" CDS 1372224..1373435 /locus_tag="Deba_1219" /EC_number="6.3.2.5" /note="COGs: COG0452 phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: sfu:Sfum_0467 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; PRIAM: phosphopantothenate--cysteine ligase; SPTR: Q1K0Z1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic" /codon_start=1 /transl_table=11 /product="phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase" /protein_id="YP_003807181.1" /db_xref="GI:302342652" /db_xref="GeneID:9493676" /translation="MAEKRRVLLGVSGGIAAYKAAEVASTLTKKGHPVRVLMTKNARQ FVGPLTFAALTGFPVSLDEALFDPGQESAIGHIELARWADLIVLAPATANLIAKAALG LADDFLSTTLLASDAPLLIAPAMNPHMFAHPAVGENLARLTARGASVIGPGLGPTACG EEGRGRMAEPAQIVEAALGLLGPRDLAGARVLISAGPTREHLDPVRFLSNPSTGRMGL EVARAALRRGAAVTVVLGPCQLPRPDGARIIDVVSAEQMAQAVLGEAPGHDVIIKSAA VSDYRPLECHAHKVKKGELPEELCRLAGTVDILAELGRRKSGQILVGFAAETQDLLAN GREKLRRKNLDLLLANDVSAKDAGFAVSTNRAHLLHADGQVESLPLMSKEDMAHRLLD SVADLWRRGAA" misc_feature 1372224..1373420 /locus_tag="Deba_1219" /note="bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated; Region: PRK05579" /db_xref="CDD:180143" misc_feature 1372236..1372766 /locus_tag="Deba_1219" /note="Flavoprotein; Region: Flavoprotein; cl08021" /db_xref="CDD:195652" misc_feature 1372785..1373375 /locus_tag="Deba_1219" /note="DNA / pantothenate metabolism flavoprotein; Region: DFP; cl04410" /db_xref="CDD:186628" gene 1373432..1374142 /locus_tag="Deba_1220" /db_xref="GeneID:9493677" CDS 1373432..1374142 /locus_tag="Deba_1220" /note="COGs: COG1573 uracil-DNA glycosylase; InterPro IPR005122:IPR005273; KEGG: hoh:Hoch_5015 phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; SPTR: D0LVE3 Phage SPO1 DNA polymerase-related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4" /codon_start=1 /transl_table=11 /product="phage SPO1 DNA polymerase-related protein" /protein_id="YP_003807182.1" /db_xref="GI:302342653" /db_xref="GeneID:9493677" /translation="MSQALGQLAENLRCRRRLGLALTRGSADDLARLLALAGAAPSPV ASVAAPPPDLPLELESMALAVGQCKRCPLAHGRNKAVFGQGPDDARLMFIGEAPGAQE DQQGLPFVGPAGRLLDNMLAAVGLRREAVYVTNIVKCRPPNNRDPRPEEVAACRPWLE AQARAVGPKVICTLGRPAALAVLGSDAPISALRGNWHEALGARVLPTFHPAYLLRSPQ RKGQAYQDMKALALALKD" misc_feature 1373633..1374139 /locus_tag="Deba_1220" /note="Uracil DNA glycosylase superfamily; Region: UDG; cl00483" /db_xref="CDD:193838" gene 1374173..1375498 /locus_tag="Deba_1221" /db_xref="GeneID:9493678" CDS 1374173..1375498 /locus_tag="Deba_1221" /note="COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: tye:THEYE_A0592 membrane-bound serine protease; PFAM: protein of unknown function DUF107; SPTR: B5YJM0 Membrane-bound serine protease; PFAM: Clp protease; NfeD-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807183.1" /db_xref="GI:302342654" /db_xref="GeneID:9493678" /translation="MPRHWLTIGLLALTLLAATSGRADRAAEDPPTAAPVWIIALDDT VNPATAEFVRRSLEQAAAHGAPLVVLIVDTPGGLVESMRAMVRAILASPTPVAVWVGP SGARATSAGAFLVLAGHVAAMAPASHLGAAAPVAGGGQEIEGVMAKKAASDLSALAAS LAKDRGRDAKAAQLMVTEAKSYDAAQAQELGLIDLRADDLAELLQKLDGRKARTATGE KTIQTAGRPQRHEQPTWLDKVLSFLANPNMAYLLLMIGLAGVYLEFSHPGAVLPGVVG ALCLLFAFFAMSVLPVSSLGLALIALAVVLFIVEIKVTSFGLLSLAGALCLVFGSLML FDFEGDFVELSLGVMTPVVAAVIAFFAGVAYLAGRAQMATSATGAEGLIGARGRVSRR AGWVVVRGELWRARGAEGLAADAAVVVRRLDGLELVVEPLADETRADET" misc_feature 1374278..1374835 /locus_tag="Deba_1221" /note="Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease; Region: Clp_protease_NfeD_1; cd07020" /db_xref="CDD:132931" misc_feature order(1374281..1374283,1374773..1374775) /locus_tag="Deba_1221" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132931" misc_feature order(1374497..1374499,1374617..1374619) /locus_tag="Deba_1221" /note="active site residues [active]" /db_xref="CDD:132931" misc_feature 1375115..>1375381 /locus_tag="Deba_1221" /note="NfeD-like C-terminal, partner-binding; Region: NfeD; cl00686" /db_xref="CDD:120037" gene 1375514..1376320 /locus_tag="Deba_1222" /db_xref="GeneID:9493679" CDS 1375514..1376320 /locus_tag="Deba_1222" /note="COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR001972; KEGG: sfu:Sfum_0464 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: A0LFG2 SPFH domain, Band 7 family protein; PFAM: SPFH domain / Band 7 family" /codon_start=1 /transl_table=11 /product="band 7 protein" /protein_id="YP_003807184.1" /db_xref="GI:302342655" /db_xref="GeneID:9493679" /translation="MSDFWGGLLDFFGAALGGVLPVLVLVILFLISALKVLREYERGV IFRLGRVIAAKGPGLIILIPLIDRMMKVSLRTVAMDVAPQDVITRDNVSVKVNAVVYF RVMDPVKAIIQVEDYLYATGQLAQTTLRSVCGQMELDELLSEREKINGELQQILDQQT DAWGIKVSIVELKHIDLPSEMQRAMARQAEAERERRAKIINSEGEYQAAEKLAEAAAI IAMHPEALQLRYLQTLREVASENNSTTLFPLPIDLFRPFLKMVDKLDDGK" misc_feature 1375622..1376263 /locus_tag="Deba_1222" /note="Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form...; Region: Band_7_stomatin_like; cd03403" /db_xref="CDD:48215" gene 1376387..1376716 /locus_tag="Deba_1223" /db_xref="GeneID:9493680" CDS 1376387..1376716 /locus_tag="Deba_1223" /note="KEGG: dal:Dalk_0401 hypothetical protein; SPTR: B8FH22 Putative uncharacterized protein; PFAM: Rho termination factor, N-terminal domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807185.1" /db_xref="GI:302342656" /db_xref="GeneID:9493680" /translation="MADDQIFAKPLEKMTVKELRDLALTINGIVGVHSMKKEELMAAI KEAKGIVDEEGEKKFARQIRQIKADIRTLREKRDQAREKDDKNAVAILRRRISRLKKQ TRNLATA" misc_feature 1376417..>1376680 /locus_tag="Deba_1223" /note="transcription termination factor Rho; Provisional; Region: PRK12678" /db_xref="CDD:183675" gene complement(1376798..1378090) /locus_tag="Deba_1224" /db_xref="GeneID:9493681" CDS complement(1376798..1378090) /locus_tag="Deba_1224" /EC_number="1.1.1.23" /note="COGs: COG0141 Histidinol dehydrogenase; InterPro IPR012131:IPR001692:IPR016161; KEGG: mma:MM_0424 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; SPTR: Q8PZR8 Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase" /codon_start=1 /transl_table=11 /product="histidinol dehydrogenase" /protein_id="YP_003807186.1" /db_xref="GI:302342657" /db_xref="GeneID:9493681" /translation="MQLTPEKLGDLSPQRRERLMARSNEDISSVFDHVRGILADIRAR GDQASVDWHKELKADLTPDDFRVDHAEMTKALGQTPKDLLGCLEKAAVNIRAFHAAQM ERPMWQMEVAPGIIAGRKTTPLDSAGCYVPGGRAAYPSTALMTILPAVVAGVGRVVVC TPPGEGLQVNPLTLAACHIAGASEIYKLGGPWAIGAMAYGTGVVPKVAKIVGPGNKYV TAAKMQVFGVVDIDSPAGPSEALLLADRTANPRHLALDFLSQVEHDPASAAVLVTDDA QLAQAVCQRINDIYPGMPRRQIMDQGGAYCAVLVADDMDQAIEFTNDYAPEHLQIVTA EPFVTLQRIRHAGSIFMGPWAPVPVGDYASGTNHTLPTGQGAKMFSGLSVDDFLKKPT FQYLTKDGLASLRQTVTTLAEAEGLPIHAMTVRERFND" misc_feature complement(1376801..1378063) /locus_tag="Deba_1224" /note="Histidinol dehydrogenase [Amino acid transport and metabolism]; Region: HisD; COG0141" /db_xref="CDD:30490" misc_feature complement(1376831..1377991) /locus_tag="Deba_1224" /note="E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-...; Region: Histidinol_dh; cd06572" /db_xref="CDD:119329" misc_feature complement(order(1377302..1377304,1377437..1377442, 1377446..1377454,1377515..1377517,1377521..1377526, 1377605..1377607,1377668..1377670,1377692..1377697, 1377701..1377703,1377923..1377925)) /locus_tag="Deba_1224" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature complement(order(1376831..1376851,1376855..1376860, 1376903..1376926,1376933..1376938,1376942..1376956, 1376960..1376965,1376993..1376995,1376999..1377001, 1377005..1377019,1377023..1377028,1377032..1377034, 1377038..1377064,1377068..1377073,1377080..1377082, 1377095..1377097,1377302..1377307,1377311..1377319, 1377323..1377328,1377335..1377340,1377410..1377412, 1377422..1377424,1377467..1377469,1377671..1377685, 1377719..1377721,1377725..1377727,1377734..1377748, 1377758..1377760,1377764..1377766,1377788..1377793, 1377800..1377805,1377812..1377817,1377824..1377826, 1377830..1377835,1377842..1377847)) /locus_tag="Deba_1224" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119329" misc_feature complement(order(1376831..1376833,1376840..1376842, 1376846..1376848,1376987..1376989,1377005..1377010, 1377020..1377022,1377107..1377112,1377302..1377304, 1377377..1377379,1377671..1377673,1377677..1377679)) /locus_tag="Deba_1224" /note="product binding site; other site" /db_xref="CDD:119329" misc_feature complement(order(1376831..1376833,1376840..1376842, 1376846..1376848,1376987..1376989,1377005..1377010, 1377020..1377022,1377107..1377112,1377302..1377304, 1377311..1377313,1377377..1377379,1377671..1377673)) /locus_tag="Deba_1224" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature complement(order(1376831..1376833,1377008..1377010, 1377302..1377304,1377311..1377313)) /locus_tag="Deba_1224" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:119329" misc_feature complement(1377107..1377112) /locus_tag="Deba_1224" /note="catalytic residues [active]" /db_xref="CDD:119329" gene complement(1378182..1379048) /locus_tag="Deba_1225" /db_xref="GeneID:9493682" CDS complement(1378182..1379048) /locus_tag="Deba_1225" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003594:IPR011006; KEGG: lic:LIC11110 histidine kinase response regulator hybrid protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; SPTR: Q8F227 Two-component hybrid sensor and regulator; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807187.1" /db_xref="GI:302342658" /db_xref="GeneID:9493682" /translation="MSCDKPNDEKLPVRPSRILVADDEDALRELLKRFLETKGHQVVL AQDGREALKLFREQPFDLVLSDVRMPGLDGLQLLAAVKDINPRTPVVLISGYGDIETV VTALKAGAENFLAKPIRIDMLRRVVSQSLSLSARSERRADHFPNVTQQTQIDTPSQQC YINDIIYLIAASAAAVGYVSHDLDNNLKLALVEAIMNAMEHGNKWDENKKIHLTVTIG ADMFKIVIADEGPGFDPDKLPDPTSPEQLLAERGRGVFLMRAIMDEITYNQRGNEVTM VKGNPGKAVEQA" misc_feature complement(1378683..1378997) /locus_tag="Deba_1225" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1378686..1378994) /locus_tag="Deba_1225" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1378698..1378703,1378710..1378712, 1378767..1378769,1378827..1378829,1378851..1378853, 1378980..1378985)) /locus_tag="Deba_1225" /note="active site" /db_xref="CDD:29071" misc_feature complement(1378851..1378853) /locus_tag="Deba_1225" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1378827..1378835,1378839..1378844)) /locus_tag="Deba_1225" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1378695..1378703) /locus_tag="Deba_1225" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1378215..1378532) /locus_tag="Deba_1225" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene complement(1379051..1380235) /locus_tag="Deba_1226" /db_xref="GeneID:9493683" CDS complement(1379051..1380235) /locus_tag="Deba_1226" /note="COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001789:IPR010822:IPR001932:IPR011006; KEGG: hmo:HM1_2362 response regulator receiver modulated serine phosphatase; PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; SPTR: B0TIH1 Response regulator receiver modulated serine phosphatase; PFAM: Response regulator receiver domain; Stage II sporulation protein E (SpoIIE)" /codon_start=1 /transl_table=11 /product="response regulator receiver modulated serine phosphatase" /protein_id="YP_003807188.1" /db_xref="GI:302342659" /db_xref="GeneID:9493683" /translation="MINLCGYDPDLRQNPAKILIVDDSKLTREMLRAVMLKFGYKVVT AQHGRAAIEALTAAPDIDLIILDLVMPVMNGFEFLQWRAERPEVNLIPVIVSSSLDDF DAITIALSMNSYDYFTKPLTERDMEVTLPLKITNAVATRRLMLQTRRQNELLNYELEM AARYQQFLLPRDVNIQGVKVAYQFEPCSGVGGDYFDFFELSRDEVGMVVADVSGHGVA SAMTATIIKALIPRYLEIYKAPSAALLALNDDLLKLTPDDVFVTAFAGVYRPASRQLI WSTAGHPSPILARKDRPASLLGEESPILGFFASNDATMKLCDQLIDILPGDRLVLYTD GLIEAKNQADVMFGVNRLTHLVGSGGGVATEALKDMICQELFRFVGGPINDDVAIIVL DF" misc_feature complement(1379846..1380184) /locus_tag="Deba_1226" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1379846..1380181) /locus_tag="Deba_1226" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1379876..1379881,1379888..1379890, 1379945..1379947,1380011..1380013,1380035..1380037, 1380167..1380172)) /locus_tag="Deba_1226" /note="active site" /db_xref="CDD:29071" misc_feature complement(1380035..1380037) /locus_tag="Deba_1226" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1380011..1380019,1380023..1380028)) /locus_tag="Deba_1226" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1379873..1379881) /locus_tag="Deba_1226" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1379105..1379707) /locus_tag="Deba_1226" /note="Sigma factor PP2C-like phosphatases; Region: PP2C_SIG; smart00331" /db_xref="CDD:128626" misc_feature complement(1379054..1379635) /locus_tag="Deba_1226" /note="Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cl00120" /db_xref="CDD:193664" gene complement(1380232..1381329) /locus_tag="Deba_1227" /db_xref="GeneID:9493684" CDS complement(1380232..1381329) /locus_tag="Deba_1227" /EC_number="3.1.1.61" /note="COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR001789:IPR000673:IPR008248:IPR011006; KEGG: cvi:CV_1009 chemotaxis-specific methylesterase; PFAM: CheB methylesterase; response regulator receiver; PRIAM: Protein-glutamate methylesterase; SMART: response regulator receiver; SPTR: Q1PXP9 Strongly similar to chemotaxis response regulator protein (glutamate methylesterase); PFAM: CheB methylesterase; Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver modulated CheB methylesterase" /protein_id="YP_003807189.1" /db_xref="GI:302342660" /db_xref="GeneID:9493684" /translation="MPDKPIKAMVVDDSAMIREFLRATLDAQPDIEVVATAADPYIAR DKFLKLRPTVITLDIEMPRMDGLTFLEKLMKAHPTPVVMFSSLTQHGAEATIKALALG AVDFVAKPVVNMRENLPDLAQEIVAKVRSAAGVKAKARRVSPANMQVPRKVEVDEVVS LTKTPPRPGGPMIVLIGASTGGTVALEDVLCRLPADSPPIAVVQHMPEHFTLAFAQRL NEKAHITIAEAQDGQPITSGVCLIAPGGKHMLVERNANGYYANVKDGPPVNRHKPSVD VLFRSGVNSAGPNAVAIIMTGMGDDGAKGLKDLHDCGAFTVAQNEESCVVYGMPKAAV ELGAADRIVPLERIAPLVVGLWSQATGRTVG" misc_feature complement(1380265..1381320) /locus_tag="Deba_1227" /note="chemotaxis-specific methylesterase; Provisional; Region: PRK00742" /db_xref="CDD:179106" misc_feature complement(1380931..1381305) /locus_tag="Deba_1227" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1381000..1381005,1381012..1381014, 1381075..1381077,1381132..1381134,1381156..1381158, 1381291..1381296)) /locus_tag="Deba_1227" /note="active site" /db_xref="CDD:29071" misc_feature complement(1381156..1381158) /locus_tag="Deba_1227" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1381132..1381140,1381144..1381149)) /locus_tag="Deba_1227" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1380997..1381005) /locus_tag="Deba_1227" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1380265..1380813) /locus_tag="Deba_1227" /note="CheB methylesterase; Region: CheB_methylest; pfam01339" /db_xref="CDD:144802" gene complement(1381392..1381976) /locus_tag="Deba_1228" /db_xref="GeneID:9493685" CDS complement(1381392..1381976) /locus_tag="Deba_1228" /note="COGs: COG1871 Chemotaxis protein; stimulates methylation of MCP protein; InterPro IPR005659; KEGG: sbm:Shew185_2243 chemoreceptor glutamine deamidase CheD; PFAM: CheD family protein; SPTR: A6WNJ2 CheD; PFAM: CheD; stimulates methylation of MCP proteins" /codon_start=1 /transl_table=11 /product="CheD" /protein_id="YP_003807190.1" /db_xref="GI:302342661" /db_xref="GeneID:9493685" /translation="MVKRYHNQLKRDMILIQPGEYYVTKKDEVIATVLGSCISVCLRD NDNRIGGMNHFMLPGDFRAEEVFSSNSGRYGMYAMELLIGDLLKLGGGKTNLSAKVFG GGHVLNSVPQTAKNVPQANIDFVKAFLSMEGIPVVNSDVGGRYGRKVLYLPSTGKAYV RSLVPEDNRKLADREVKYEKHLRKETKSEDLTLF" misc_feature complement(1381395..1381967) /locus_tag="Deba_1228" /note="CheD chemotactic sensory transduction; Region: CheD; cl00810" /db_xref="CDD:193944" gene complement(1381981..1382859) /locus_tag="Deba_1229" /db_xref="GeneID:9493686" CDS complement(1381981..1382859) /locus_tag="Deba_1229" /EC_number="2.1.1.80" /note="COGs: COG1352 methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: lic:LIC11871 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: Q8F4J9 methylase of chemotaxis methyl-accepting proteins; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain" /codon_start=1 /transl_table=11 /product="MCP methyltransferase, CheR-type" /protein_id="YP_003807191.1" /db_xref="GI:302342662" /db_xref="GeneID:9493686" /translation="MPLKSKREPHATISVTPYDLSADEFEQIRVIVKGQTGISLGLHK RDLVISRLSKRLRALGLSSFREYIQYLEEAGDEDEVVQMVNRITTNKTDFFREKHHFE FLAGKVLPALHAAGEASGRRKLRIWSAGCSSGEEPYTIAMTVAAFFDKKPGWDIKILA TDIDTGMLTTASRGQYDEALLEPVPRNLLGRYFSRMRDGAGFRYQVKPELRGMITFRK FNFMNETYPLRPDLDVVFCRNVLIYFDNDDKKRILEKIHKVIKPGGHLFVGHSESLMM VKHLFQYVGTTVYQKI" misc_feature complement(1382629..1382799) /locus_tag="Deba_1229" /note="CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705" /db_xref="CDD:112515" misc_feature complement(1381993..1382796) /locus_tag="Deba_1229" /note="Methyltransferase, chemotaxis proteins; Region: MeTrc; smart00138" /db_xref="CDD:128443" misc_feature complement(1381993..1382592) /locus_tag="Deba_1229" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1382849..1384231) /locus_tag="Deba_1230" /db_xref="GeneID:9493687" CDS complement(1382849..1384231) /locus_tag="Deba_1230" /note="COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR008207:IPR002545; KEGG: dba:Dbac_0868 CheA signal transduction histidine kinase; PFAM: CheW domain protein; Hpt domain protein; SMART: CheW domain protein; Hpt domain protein; SPTR: C7LPE3 CheA signal transduction histidine kinase; PFAM: CheW-like domain; Hpt domain" /codon_start=1 /transl_table=11 /product="CheW protein" /protein_id="YP_003807192.1" /db_xref="GI:302342663" /db_xref="GeneID:9493687" /translation="MGEFDDIVPEFIAESTELLEEVENGLLRLEQGNFDQETINTVFR AIHSIKGGAGFVGLTKIERLAHKMEDLLNLIRGGDLQPSQPVTDALLQSLDVLTALFQ RVDEHAAIDVDGPIRALEAALSAGVEQEVKAQYDAKDSPNPKSGLPNFQVSNYVLRAK LGQGNLFWIHLNLRLIEKRGLTPTQLINEMLSMGELLDSIVDLPDAGNPHTYEVAEVS FDVLYSTVLDADLLSAALRLEESEFRLVSEGDFAQNGLGEPAPPEEPSAPPPQAQPQA QPQAEAKPQRRNQPPAAKAEAQPPARREQPTPAVEPPAPPEPSEFLTLTLGSEVYGVD ILSVQEIIGLPDLTKLPRSPNHVLGVMNLRGMVVPVIDLRLKLRLAETVTDPVVVVVR VGEKIMGAVVDGVNDVIQIEPELVQEAPDFSGAIKRDYLSGLIRHDDDMVILLAIDRL LAPEALGNAA" misc_feature complement(1383926..1384222) /locus_tag="Deba_1230" /note="Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088" /db_xref="CDD:28972" misc_feature complement(order(1384025..1384027,1384034..1384036, 1384079..1384084,1384091..1384093)) /locus_tag="Deba_1230" /note="putative binding surface; other site" /db_xref="CDD:28972" misc_feature complement(1384091..1384093) /locus_tag="Deba_1230" /note="active site" /db_xref="CDD:28972" misc_feature complement(1382870..1383274) /locus_tag="Deba_1230" /note="CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and...; Region: CheW_like; cl00256" /db_xref="CDD:185867" gene complement(1384254..1386317) /locus_tag="Deba_1231" /db_xref="GeneID:9493688" CDS complement(1384254..1386317) /locus_tag="Deba_1231" /note="COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR008207:IPR004105:IPR003594:IPR002545:IPR 005467:IPR004358:IPR009082; KEGG: xom:XOO_2693 chemotaxis protein; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SPTR: Q2P1X9 Chemotaxis protein; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain" /codon_start=1 /transl_table=11 /product="CheA signal transduction histidine kinase" /protein_id="YP_003807193.1" /db_xref="GI:302342664" /db_xref="GeneID:9493688" /translation="MDDKLLKIFAEESQDLIESLEEGLVNLEGASDPEKINAIFRAAH TMKGNAGIVGFNDVLDLTHLMEGVLDEMRQGKRQPDSDTVGLLLSSVDALKSLVNERL AGGDPPPPVEVIAALGRLLEDDAPPATAGQPPEADRQEEQAPSGPSRFKITLRFQPEL FNTGTDPLMLLLELGELGSIEEIICHYDTLPKLSQMDPGMLYLWWELVLATEEPPSTV ENVFIFVMDENDISIEPYKPAASRPKPDAEPKPGPKRAAPKPEPPKPAPVEQPRPAPQ PAPVSAAQSAPRAAAPTVANPPAAMQPAPTIRVDTDKLDKLVNLVGELVIGVARVMQI AGDDAMPELSAAVDALEHISRDLQEQVMRVRMVPVEATFNRFQRVVRDLASELGKQIT LRMSGTETELDKNVIEQIADPLKHLVRNSADHGLEQPDERLRAGKPEAGLIHLRAYQQ EGRIIIEVIDDGRGIDREAVLAKAIERGLAAPGVSLSDAEVFGFMFQAGFSTAKQVTE VSGRGVGLDVVRQNIESLRGSVEVESTPGRGTIFRIKLPLTLAIIEGMMVRVGHEILT LPVLSILESLRPKASELKTLEGQGELVSVRGEYLPLVRLHHVLDLPTERTDPTKALVV IIESVSRRFGILVDDILGEQQAVIKSLEHNYHKIEGVAGATILGDGRVSLILDIHGLE KIAFA" misc_feature complement(<1385595..1386317) /locus_tag="Deba_1231" /note="Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]; Region: CheA; COG0643" /db_xref="CDD:30988" misc_feature complement(1386021..1386314) /locus_tag="Deba_1231" /note="Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088" /db_xref="CDD:28972" misc_feature complement(order(1386120..1386122,1386129..1386131, 1386174..1386179,1386186..1386188)) /locus_tag="Deba_1231" /note="putative binding surface; other site" /db_xref="CDD:28972" misc_feature complement(1386186..1386188) /locus_tag="Deba_1231" /note="active site" /db_xref="CDD:28972" misc_feature complement(1385226..1385402) /locus_tag="Deba_1231" /note="Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895" /db_xref="CDD:190468" misc_feature complement(1384680..1385090) /locus_tag="Deba_1231" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1384692..1384694,1384698..1384703, 1384716..1384718,1384722..1384724,1384770..1384781, 1384923..1384928,1384932..1384934,1384938..1384940, 1384944..1384946,1385049..1385051,1385058..1385060, 1385070..1385072)) /locus_tag="Deba_1231" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1385058..1385060) /locus_tag="Deba_1231" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1384773..1384775,1384779..1384781, 1384926..1384928,1384932..1384934)) /locus_tag="Deba_1231" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(1384275..1384670) /locus_tag="Deba_1231" /note="CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731" /db_xref="CDD:29681" gene complement(1386328..1386714) /locus_tag="Deba_1232" /db_xref="GeneID:9493689" CDS complement(1386328..1386714) /locus_tag="Deba_1232" /note="COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006; KEGG: hor:Hore_22620 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8D0S1 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807194.1" /db_xref="GI:302342665" /db_xref="GeneID:9493689" /translation="MSKTILVVDDSATLRMSVEMTLSPAGFTVVQATNGSEGLQALKK MEQQRTQPDMIISDINMPIMDGIAFIKEVKKTSFKFVPILVLTTEREDSKKLEGKQAG ASGWLVKPFKPDTLLTVVRKFTRSLA" misc_feature complement(1386352..1386702) /locus_tag="Deba_1232" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1386346..1386699) /locus_tag="Deba_1232" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1386385..1386390,1386397..1386399, 1386454..1386456,1386517..1386519,1386541..1386543, 1386685..1386690)) /locus_tag="Deba_1232" /note="active site" /db_xref="CDD:29071" misc_feature complement(1386541..1386543) /locus_tag="Deba_1232" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1386517..1386525,1386529..1386534)) /locus_tag="Deba_1232" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1386382..1386390) /locus_tag="Deba_1232" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(1386742..1387035) /locus_tag="Deba_1233" /db_xref="GeneID:9493690" CDS complement(1386742..1387035) /locus_tag="Deba_1233" /note="InterPro IPR002645; KEGG: xca:xccb100_1462 anti-anti-sigma factor; SPTR: Q8P7B2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="anti-anti-sigma factor" /protein_id="YP_003807195.1" /db_xref="GI:302342666" /db_xref="GeneID:9493690" /translation="MLNCVLDNDVITISGEAKVQYLESLGDCLQRGLDSESAVRLSLA QVTEIDTAGLQALLSFLLTRKEIGPVNIIDSSPVVERALELTGLKQAFSAFAG" misc_feature complement(1386748..1387008) /locus_tag="Deba_1233" /note="Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043" /db_xref="CDD:132914" misc_feature complement(order(1386772..1386774,1386778..1386783, 1386793..1386795,1386856..1386861,1386868..1386876, 1386880..1386888,1386892..1386894,1386958..1386960, 1386976..1386984,1386988..1386990)) /locus_tag="Deba_1233" /note="anti sigma factor interaction site; other site" /db_xref="CDD:132914" misc_feature complement(1386883..1386885) /locus_tag="Deba_1233" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:132914" gene complement(1387050..1387358) /locus_tag="Deba_1234" /db_xref="GeneID:9493691" CDS complement(1387050..1387358) /locus_tag="Deba_1234" /note="InterPro IPR002645; KEGG: pca:Pcar_1874 anti-anti-sigma regulatory factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q1NPE5 Sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor" /codon_start=1 /transl_table=11 /product="anti-sigma-factor antagonist" /protein_id="YP_003807196.1" /db_xref="GI:302342667" /db_xref="GeneID:9493691" /translation="MELTVTQRGDQVRIEVVGSIDERGAEEMKRRFLELDVSSIKEVV FDFSGVTFVGSAGIGKLLLFYKNLAAGGGSIRIENMSNDIYTMFKVVKLDKIFNISAS " misc_feature complement(1387062..1387352) /locus_tag="Deba_1234" /note="Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043" /db_xref="CDD:132914" misc_feature complement(order(1387080..1387082,1387086..1387091, 1387101..1387103,1387167..1387172,1387179..1387187, 1387191..1387199,1387203..1387205,1387272..1387274, 1387290..1387298,1387302..1387304)) /locus_tag="Deba_1234" /note="anti sigma factor interaction site; other site" /db_xref="CDD:132914" misc_feature complement(1387194..1387196) /locus_tag="Deba_1234" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:132914" gene complement(1387508..1387930) /locus_tag="Deba_1235" /db_xref="GeneID:9493692" CDS complement(1387508..1387930) /locus_tag="Deba_1235" /note="InterPro IPR009875; KEGG: hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: C3Y8B3 Putative uncharacterized protein; PFAM: PilZ domain" /codon_start=1 /transl_table=11 /product="type IV pilus assembly PilZ" /protein_id="YP_003807197.1" /db_xref="GI:302342668" /db_xref="GeneID:9493692" /translation="MFLKSKKANKKAGEIVIEYEEDRRNYFRMDLPSDKPVVIKVEGR QLKALDLSAGGAAALGPPLPQEKPLKAILVLPGAQEPIPMILSSLGQLREGVVRLRFD KIRERDQERIHQFVLDLQKEEMARKRKAQALAQQKKRI" gene complement(1387902..1388636) /locus_tag="Deba_1236" /db_xref="GeneID:9493693" CDS complement(1387902..1388636) /locus_tag="Deba_1236" /note="COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: dat:HRM2_28640 MotB2; PFAM: OmpA/MotB domain protein; SPTR: C0QJD9 MotB2; PFAM: OmpA family" /codon_start=1 /transl_table=11 /product="OmpA/MotB domain protein" /protein_id="YP_003807198.1" /db_xref="GI:302342669" /db_xref="GeneID:9493693" /translation="MAPKNNNDADTLITDDAGEEGREWLVTYADMVTLLLTFFVMMLS LARLDTERFEQIVTSIQYSLGASVAPGGRIGRIDAHDTKRMSLSELTGRQTDPIMQDI REVTDQKNLDDVVEVIDQGDKVILRVKGQLLFNTGSSDINPQALGVLKAIADVVDRNP GWRLDVKGHTDSRPISSVKFASNWELSSLRATAVLRYLIEQGVSPSRLTATGYADTQR LVPDSSEENMARNRRVEFVLEKQKGQ" misc_feature complement(1387914..1388567) /locus_tag="Deba_1236" /note="flagellar motor protein MotS; Reviewed; Region: PRK06925" /db_xref="CDD:180754" misc_feature complement(1387923..1388246) /locus_tag="Deba_1236" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature complement(order(1387941..1387943,1387953..1387955, 1388079..1388081,1388088..1388093,1388115..1388117, 1388124..1388129,1388226..1388231)) /locus_tag="Deba_1236" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene complement(1388617..1389402) /locus_tag="Deba_1237" /db_xref="GeneID:9493694" CDS complement(1388617..1389402) /locus_tag="Deba_1237" /note="COGs: COG1291 flagellar motor component; InterPro IPR002898:IPR000540; KEGG: dma:DMR_12670 chemotaxis protein MotA; PFAM: MotA/TolQ/ExbB proton channel; SPTR: C0GN88 MotA/TolQ/ExbB proton channel; manually curated; PFAM: MotA/TolQ/ExbB proton channel family" /codon_start=1 /transl_table=11 /product="MotA/TolQ/ExbB proton channel" /protein_id="YP_003807199.1" /db_xref="GI:302342670" /db_xref="GeneID:9493694" /translation="MDFATILGIFSGLALISGAIFSQGGVDLFINLPSMMIVMGGTLA ATLITFPLPEVVHAFRAASQVFRQRKINPNEVVRLLLTLANISRRQGLVALSKVKTND AVLKKALMLIADGAPEELIRQTLRIEIDALRARHMDAQDVFKKMGSYAPSFGMLGTLI GLVQMLGQLDDPATIGPAMAVALITTFYGSLLSSLFFLPIAGKLRNRTNIELVNLELI FEGAVSILENNNPMLIYEKLSSFIPPKQREAYNPEKTGGAKKQ" misc_feature complement(1388659..1389402) /locus_tag="Deba_1237" /note="MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568" /db_xref="CDD:186086" misc_feature complement(1388626..1389399) /locus_tag="Deba_1237" /note="flagellar motor protein MotP; Reviewed; Region: PRK06926" /db_xref="CDD:180755" gene complement(1389434..1390600) /locus_tag="Deba_1238" /db_xref="GeneID:9493695" CDS complement(1389434..1390600) /locus_tag="Deba_1238" /note="COGs: COG3016 Uncharacterized iron-regulated protein; InterPro IPR007314:IPR001478; KEGG: sfu:Sfum_2732 hypothetical protein; PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein; SPTR: A0LLV8 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF399; PDZ domain (Also known as DHR or GLGF)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807200.1" /db_xref="GI:302342671" /db_xref="GeneID:9493695" /translation="MRRPRYILLALLTLLSAGCATVNQPPKQPPPQPGAIFERARPAP LDQAALAQTLARARLVLVGESHRHPGHHAIQAMVLELVAQGRDPRRVVLGVEWLDQTK QPACDELSAGRIDVDEFAKKVDWERSWGYDLELYRPILQMARDKGLRLAALGAPLEVI RQIGRQGLASLGPSQRAAIAPALDLDDAAYRAQVAAQAPMHGQLSGGGLDDFFAAQVA RDETMAHNMAARLTPWPDGDAVGVVMVGVGHMAHGLGLPPRLVRRLPGARMVRVMPVE PDAADEISLLFQADYADVLIVSTPAPPRPPRLGVILEPAPGGGLGVRAVLPGSAAEAA GLRAGDVLESVDGKRLRQAKDIHDAVKADPARKRVFDVRRGERLLRLEIGPRPL" misc_feature complement(1389914..1390423) /locus_tag="Deba_1238" /note="Protein of unknown function, DUF399; Region: DUF399; cl01139" /db_xref="CDD:154223" misc_feature complement(1389494..1389688) /locus_tag="Deba_1238" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" gene complement(1390755..1392164) /locus_tag="Deba_1239" /db_xref="GeneID:9493696" CDS complement(1390755..1392164) /locus_tag="Deba_1239" /note="COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011055; KEGG: sat:SYN_00940 peptidoglycan-specific endopeptidase, M23 family; PFAM: peptidase M23; SPTR: Q1NUT6 peptidase M23B; PFAM: peptidase family M23" /codon_start=1 /transl_table=11 /product="peptidase M23" /protein_id="YP_003807201.1" /db_xref="GI:302342672" /db_xref="GeneID:9493696" /translation="MAMKLRPWLLAPIIIIVLLAGLAVFLWPHYEGNVPRITLEKAPK GLGLKNEIDFQVTDQGKGLRWVRVYLRQGQKTAMLLEHKPEGPTASVALKATAAPLAM GFSQGPAELVIEASDNSLRNWGSGNLSQIVLPLAIDTTPPRIMQRSGITYVNRGGSAV AVYEIDDGTTEHGVMVGQRRFKGHNPWPDQPRAAMCLFAFPFDEPRESRVSLWAADHA GNKANAPLRWRLRWRNFRADKLNASDNFLAEIQARFGMQAPPTAAATPLAVFQWVNVE LREQNHQRIAQAASQTGPYQLWSGTFLRAPGKTMAGFGEHRTYFHNGQEISQGYHLGI DLADVERSPVPAAAGGVVRLAENLGIYGNCVIVDHGQGLSTLYGHLSQMGVTVGQTVE MGQELGLSGATGLALGDHLHFSVMVDGIFVVPTEWWDPHWIQDNVLYHYEESGLPTPL ATPAGGKAAGQPQAAPTVK" misc_feature complement(1390899..1391180) /locus_tag="Deba_1239" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene 1392291..1392830 /locus_tag="Deba_1240" /db_xref="GeneID:9493697" CDS 1392291..1392830 /locus_tag="Deba_1240" /note="COGs: COG0663 carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451:IPR011004; KEGG: ank:AnaeK_1516 transferase hexapeptide repeat protein; SPTR: B4UK37 Transferase hexapeptide repeat protein; manually curated" /codon_start=1 /transl_table=11 /product="transferase hexapeptide repeat protein" /protein_id="YP_003807202.1" /db_xref="GI:302342673" /db_xref="GeneID:9493697" /translation="MIAAIADKKPRLGEGVFVAPSALVAGEVDLADEVSVWYGCVIRG DVGAIAVGARSNIQDMSVLHVSRGGPPCLVGRDVLVGHRAVLHGCSIEDEAFIGIGAI ILDGARVGAGAMIAAGGLVPPGALIPPGALAMGSPAKVKRQLSSEEMARNQAQTREYL QTARQHRRLWPLPQDDRRR" misc_feature 1392291..1392794 /locus_tag="Deba_1240" /note="Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663" /db_xref="CDD:31007" misc_feature 1392321..1392782 /locus_tag="Deba_1240" /note="Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon...; Region: LbH_gamma_CA_like; cd04645" /db_xref="CDD:100051" misc_feature order(1392339..1392341,1392345..1392347,1392351..1392356, 1392363..1392365,1392399..1392401,1392408..1392413, 1392417..1392419,1392423..1392425,1392465..1392470, 1392480..1392482,1392534..1392545,1392549..1392551, 1392585..1392587) /locus_tag="Deba_1240" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100051" misc_feature order(1392480..1392482,1392534..1392536,1392549..1392551) /locus_tag="Deba_1240" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:100051" gene 1392827..1393933 /locus_tag="Deba_1241" /db_xref="GeneID:9493698" CDS 1392827..1393933 /locus_tag="Deba_1241" /note="KEGG: sfu:Sfum_1244 hypothetical protein; SPTR: A0LHN4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807203.1" /db_xref="GI:302342674" /db_xref="GeneID:9493698" /translation="MSAAGPERLLEELLPQVRANCLMADAAVAGRFALCGLLLRLRNL HKWERDLPPWQEGAPDEVLAWVSEREEVWDALGELTPRPIRLAGRDHDPFDADGLNAH LEPLGLHYGAGLVGASLPVFFLAKQERRWRCNGLEIISLGHEFTRDIFFLPGLRQDGR IFLRRGPLPYLLWDLAADPRRSQRRFVGFGLAGYGLDHQQLLRRPTWEALVPVMEGEL QSVLWHELGEAGDGELAAGLLRRVWLEHPGSELEHFVRGVKDLLADAGPDGRLKRIIE GRLRGQIGFYPAWLHGYPRLLFPEIDAAVMELMANDDWAAVEQARQLAWRRAVAAVEG LEDVLGRQTGQAARAEAQAKVIGPLTGFRRLPGE" gene complement(1393968..1394186) /locus_tag="Deba_1242" /db_xref="GeneID:9493699" CDS complement(1393968..1394186) /locus_tag="Deba_1242" /note="COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR006196:IPR012340:IPR004368:IPR016027; KEGG: hoh:Hoch_3286 translation initiation factor IF-1; PFAM: S1 IF1 family protein; SPTR: D0LTU4 Translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="YP_003807204.1" /db_xref="GI:302342675" /db_xref="GeneID:9493699" /translation="MSRDDLIHLEGAVTRTLGGGQMEVETEQGHTLRAVLSGRMKRFK IKVLVGDKVRVSVSPYDLSHGLITYRLK" misc_feature complement(1393977..1394168) /locus_tag="Deba_1242" /note="S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451" /db_xref="CDD:88417" misc_feature complement(order(1393989..1393991,1393995..1393997, 1394046..1394057,1394070..1394075,1394082..1394084, 1394118..1394120,1394136..1394144)) /locus_tag="Deba_1242" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:88417" misc_feature complement(order(1393977..1393979,1394070..1394072, 1394082..1394084)) /locus_tag="Deba_1242" /note="predicted 30S ribosome binding site; other site" /db_xref="CDD:88417" gene 1394517..1394708 /locus_tag="Deba_1243" /db_xref="GeneID:9493700" CDS 1394517..1394708 /locus_tag="Deba_1243" /note="COGs: COG0227 ribosomal protein L28; InterPro IPR001383; KEGG: dal:Dalk_2403 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: C7LSI8 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal L28 family; TIGRFAM: ribosomal protein L28" /codon_start=1 /transl_table=11 /product="ribosomal protein L28" /protein_id="YP_003807205.1" /db_xref="GI:302342676" /db_xref="GeneID:9493700" /translation="MSQVCAFCGKKPQVGYNISHAHNKTKRRFNPNLQSVRHVEGGTV KRIRVCTRCLRSGKVVKPA" misc_feature 1394517..1394696 /locus_tag="Deba_1243" /note="Ribosomal L28 family; Region: Ribosomal_L28; cl00367" /db_xref="CDD:185945" gene complement(1394812..1396992) /locus_tag="Deba_1244" /db_xref="GeneID:9493701" CDS complement(1394812..1396992) /locus_tag="Deba_1244" /EC_number="2.7.6.5" /note="COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR006674:IPR007685:IPR004095:IPR002912:IPR 012675:IPR004811:IPR003607:IPR012676; KEGG: gbm:Gbem_3211 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain protein; amino acid-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: C6MV80 (P)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: HD domain; ACT domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family" /codon_start=1 /transl_table=11 /product="(p)ppGpp synthetase I, SpoT/RelA" /protein_id="YP_003807206.1" /db_xref="GI:302342677" /db_xref="GeneID:9493701" /translation="MKRINEIIDTVLGYHPGADVKAIMKAYVYSAKVHAGQRRSSGEP YLSHPLAVAALLSEMQLDVASICAGLLHDTVEDTEATLADITALLGAEVASLVDGVTK ITLLAAPAQAQPDASAMQAQNLRKMILAMANDIRVLLIKLADRLHNMRTLGYLKPEKQ RRIAQETRDIYAPMAHRLGIRRWQIELEDLAFYYLDPEIYQRIKEEVAQSQAERNSFI NEVIAILQKKMQEAGISCSVYGRPKHFASIYGKMQRRNVDISELYDLLAFRVLVGSIK DCYEALGVVHTIWKPVPGRFRDYIGMPKANMYQSLHTAVVGPMGQRMEVQIRTEEMHR IAEEGIAAHWRYKEQEAGDDGEQRRFAWLRRLLEWQQELDEPGEFMNSLRMDLYPEEI FVFTPTGEVKELPKGATPVDFAYAIHTQVGDRCVGAKIDGRMAPLRTELKTGDQVEII TNAKHTPSKDWLAFVKTNRARSKIRAYVRKQESERAVALGRDLLERELRKSGVTLNAA IKDQRAQKVAEELSFTELESMLAAVAYGKLSPRQVANRIAPRPEAEVKKPGFIERSIG RLRKKSPTGITVKGVEDVLVRFAGCCNPLHGDPVVGFITRGRGVTVHRADCPYLDQVE PERRVEVEWDAGDEHVRPVRITVESADRQGLFADVAQVLKQHNINILEGEVKSLPEQR GLVNLLIQVHDTKQLNRIFAEIKKIKGVNAVRRVGLGLAEKARR" misc_feature complement(1394845..1396992) /locus_tag="Deba_1244" /note="Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]; Region: SpoT; COG0317" /db_xref="CDD:30665" misc_feature complement(1396546..1396860) /locus_tag="Deba_1244" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature complement(1395982..1396338) /locus_tag="Deba_1244" /note="Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399" /db_xref="CDD:143389" misc_feature complement(order(1395982..1395987,1396009..1396011, 1396015..1396017,1396021..1396023,1396057..1396059, 1396069..1396071,1396075..1396077,1396081..1396083, 1396096..1396098,1396102..1396104,1396186..1396188, 1396198..1396203,1396264..1396266,1396270..1396272)) /locus_tag="Deba_1244" /note="synthetase active site [active]" /db_xref="CDD:143389" misc_feature complement(order(1395985..1395987,1396015..1396017, 1396021..1396023,1396057..1396059,1396069..1396071, 1396075..1396077,1396081..1396083,1396096..1396098, 1396102..1396104,1396270..1396272)) /locus_tag="Deba_1244" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143389" misc_feature complement(order(1396021..1396023,1396201..1396203)) /locus_tag="Deba_1244" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143389" misc_feature complement(1395640..1395819) /locus_tag="Deba_1244" /note="TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named...; Region: TGS_RelA_SpoT; cd01668" /db_xref="CDD:133438" misc_feature complement(1394848..1395060) /locus_tag="Deba_1244" /note="ACT domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876" /db_xref="CDD:153148" gene complement(1397157..1398872) /locus_tag="Deba_1245" /db_xref="GeneID:9493702" CDS complement(1397157..1398872) /locus_tag="Deba_1245" /note="COGs: COG0442 Prolyl-tRNA synthetase; InterProIPR002314:IPR007214:IPR004154:IPR006195:IPR 002316:IPR004500; KEGG: dma:DMR_24360 prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; SPTR: C4XTD0 Prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: Anticodon binding domain; YbaK / prolyl-tRNA synthetases associated domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II" /codon_start=1 /transl_table=11 /product="prolyl-tRNA synthetase" /protein_id="YP_003807207.1" /db_xref="GI:302342678" /db_xref="GeneID:9493702" /translation="MNFSRYLIPTLKENPSDAEVVSHQLMLRAGLIRKLAGGIYTWLP MGLRVLRKVEAIVRQEMNAAGAQELLMPGVQPAELWRESGRWDFYGRELLRFVDRHDN EYCLAPTHEEVITDLARREIQSYRDMPLNLYQIQTKFRDEIRPRFGVMRAREFLMKDA YSFDASEDAAAQSYQIMRQAYMRIFDRLGLRYGVVEADSGSIGGSFSHEFMVLADTGE DAIVSCPACGYSANLEKAPVRLADAPAAAPKAELQEVATPAAHTALQVAKFLKTKPKS IAKTMIYIADGKAVAAMVRGDREVNEVKLKNILGADVLELAGPSAIVEVTGGPVGFSG PVGLTIPVYADAELAQIPWLVVGANKADAHYTGFNLGRDAAGATIADLRNLAAGDPCP SCGAPPTLARGIEVGHIFRLGTKYSKALGATYLDVDGQAKTIVMGCYGIGVSRIVAAA IEQGNDEAGIVFPLAIAPVSVAVLPMRAEGPAMEAAQRLHDELWALGVDCLLDDRDIR PGVKFKDSDLLGVPLRVVVGPKGLETGEVELKKRTAPQPEMIPMAQAATIIAKLVVDG GGQSL" misc_feature complement(1397187..1398872) /locus_tag="Deba_1245" /note="prolyl-tRNA synthetase; Provisional; Region: PRK09194" /db_xref="CDD:181689" misc_feature complement(<1398228..1398824) /locus_tag="Deba_1245" /note="Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation...; Region: ProRS_core_prok; cd00779" /db_xref="CDD:73229" misc_feature complement(order(1398411..1398413,1398462..1398464, 1398522..1398524,1398576..1398590,1398594..1398596, 1398654..1398659,1398663..1398671,1398720..1398722, 1398741..1398752,1398771..1398776)) /locus_tag="Deba_1245" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73229" misc_feature complement(1398654..1398677) /locus_tag="Deba_1245" /note="motif 1; other site" /db_xref="CDD:73229" misc_feature complement(order(1398396..1398398,1398402..1398404, 1398408..1398410,1398417..1398425,1398447..1398449, 1398453..1398455,1398540..1398542,1398546..1398548)) /locus_tag="Deba_1245" /note="active site" /db_xref="CDD:73229" misc_feature complement(1398447..1398458) /locus_tag="Deba_1245" /note="motif 2; other site" /db_xref="CDD:73229" misc_feature complement(1397727..1398197) /locus_tag="Deba_1245" /note="INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-...; Region: ProRS-INS; cd04334" /db_xref="CDD:88585" misc_feature complement(order(1397802..1397804,1397877..1397882, 1398036..1398038)) /locus_tag="Deba_1245" /note="putative deacylase active site [active]" /db_xref="CDD:88585" misc_feature complement(1397514..>1397687) /locus_tag="Deba_1245" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:193739" misc_feature complement(order(1397538..1397540,1397547..1397552, 1397556..1397561,1397649..1397651,1397661..1397666)) /locus_tag="Deba_1245" /note="active site" /db_xref="CDD:29813" misc_feature complement(order(1397538..1397540,1397547..1397549)) /locus_tag="Deba_1245" /note="motif 3; other site" /db_xref="CDD:29813" misc_feature complement(1397193..1397471) /locus_tag="Deba_1245" /note="HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible...; Region: HGTP_anticodon; cl00266" /db_xref="CDD:193738" misc_feature complement(order(1397253..1397255,1397259..1397261, 1397289..1397291,1397313..1397315,1397331..1397333, 1397442..1397447)) /locus_tag="Deba_1245" /note="anticodon binding site; other site" /db_xref="CDD:29797" gene complement(1398890..1399984) /locus_tag="Deba_1246" /db_xref="GeneID:9493703" CDS complement(1398890..1399984) /locus_tag="Deba_1246" /EC_number="1.17.7.1" /note="COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; InterPro IPR004588:IPR016425:IPR011005; KEGG: dds:Ddes_0950 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; SPTR: B6WSD2 Putative uncharacterized protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" /codon_start=1 /transl_table=11 /product="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" /protein_id="YP_003807208.1" /db_xref="GI:302342679" /db_xref="GeneID:9493703" /translation="MTTPHLVTRDKTRRIMVGRVAVGGGAPLAVQSMTNTDTRDVAAT LAQINRLAQAGCHIVRCAAPDMTAALAFGPICAASPLPVIADIHFDGRLAVAAVENGA AGLRINPGNIGDQRAVDRVVDAAKAHGVSIRVGANGGSLPKDLLQKHGGPTPAALVEA VLGHVAMLEARGFEAIKVSLKSSNVLDTIAAYRLFAAQSDRPLHLGVTEAGGLLAGAV KSAVGMGALLLDGLGDTLRVSLTADPAREVEAAWHMLAACGLGRRGVEIISCPTCGRT EIDLFSLLAAAEEALAGVSEPLRVAIMGCVVNGPGEAAHADVGIAGGRGVGVIFAKGR VLKKVAEADLLAEFIKAVAVAQAEYRQNNS" misc_feature complement(1398929..1399984) /locus_tag="Deba_1246" /note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed; Region: ispG; PRK00366" /db_xref="CDD:178989" misc_feature complement(1398929..1399960) /locus_tag="Deba_1246" /note="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Region: ispG_gcpE; TIGR00612" /db_xref="CDD:188068" gene complement(1399996..1400562) /locus_tag="Deba_1247" /db_xref="GeneID:9493704" CDS complement(1399996..1400562) /locus_tag="Deba_1247" /note="KEGG: cma:Cmaq_0628 alpha-L-glutamate ligase; SPTR: A8MCG3 Alpha-L-glutamate ligase, RimK family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807209.1" /db_xref="GI:302342680" /db_xref="GeneID:9493704" /translation="MNIAQEQTKAAEHATAVYDLAARLGETLANALDGSVAMTGAPLN DPKLARSAMAGLFQYGLVFCALEKCAINRQADARYWAAVGQALEFMARKGAQSAAQAI LAPLRALAPAEELDAIAARTDDPWRDYAGASLQNIAEGPDKTPVGVLIKQITPLFYAK ADHSAVADKIIQITFEAVKVLFTDGGLV" gene complement(1400575..1401033) /locus_tag="Deba_1248" /db_xref="GeneID:9493705" CDS complement(1400575..1401033) /locus_tag="Deba_1248" /note="COGs: COG1683 conserved hypothetical protein; InterPro IPR007553; KEGG: sth:STH1078 hypothetical protein; PFAM: protein of unknown function DUF523; SPTR: Q67QI0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF523)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807210.1" /db_xref="GI:302342681" /db_xref="GeneID:9493705" /translation="MILVSACLWGERSRYDGRHSQALWLREALAGRDVLALCPEQLGG LPTPRPPARIVGARAGREGDDVLAGRAKLIDAHGRDVSRQFIAGARAVLARAQAAGAR RAYLKDRSPSCGHDPLGQNPQGGPGQGVLTALLLAGGFEVVEVRAAAGDD" misc_feature complement(<1400692..1401030) /locus_tag="Deba_1248" /note="Protein of unknown function (DUF523); Region: DUF523; cl00733" /db_xref="CDD:153961" gene complement(1401030..1402079) /locus_tag="Deba_1249" /db_xref="GeneID:9493706" CDS complement(1401030..1402079) /locus_tag="Deba_1249" /EC_number="6.3.3.1" /note="COGs: COG0150 phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR000728:IPR010918:IPR004733:IPR016188; KEGG: pca:Pcar_1293 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; PRIAM: phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Q3A515 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine cyclo-ligase" /protein_id="YP_003807211.1" /db_xref="GI:302342682" /db_xref="GeneID:9493706" /translation="MSAHDRYREAGVDIEKGNEFVRRISDMVKSTHTAAVMTGIGGFS GLYSLNTDKYQDPVLVSSTDGVGTKLKIAFMMNKHDTIGVDMVGMVLNDIVVTGAKPL FLLDYLATGKLEIGVAEQIIAGIVDGCKQAGCALIGGETAEMPGFYADGEYDLAGFGV GVADRSAIIDGSSINKNSALIGLASSGLHSNGYSLARRIVFDELGLGVDSVVDDLPGG SVGEVLLTPTKIYVEPVLNVMRNFALQGMANITGGGLLENLPRVLPESVGAVVRRGSW NIPPVFEFLRRAGKLDEHEMLRTFNSGLGMILLTPGDQADEVVARLAAMDQKASIIGE TKPRAKGQDAVEIVD" misc_feature complement(1401078..1402064) /locus_tag="Deba_1249" /note="phosphoribosylaminoimidazole synthetase; Provisional; Region: PRK05385" /db_xref="CDD:180049" misc_feature complement(1401078..1401968) /locus_tag="Deba_1249" /note="PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine...; Region: PurM; cd02196" /db_xref="CDD:100032" misc_feature complement(order(1401297..1401299,1401606..1401608, 1401618..1401623,1401642..1401644,1401648..1401650, 1401660..1401662,1401753..1401755,1401762..1401764, 1401771..1401773,1401789..1401791,1401801..1401803, 1401867..1401869,1401885..1401887,1401891..1401893, 1401897..1401908,1401939..1401953)) /locus_tag="Deba_1249" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100032" misc_feature complement(order(1401660..1401668,1401801..1401803)) /locus_tag="Deba_1249" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:100032" gene complement(1402286..1402783) /locus_tag="Deba_1250" /db_xref="GeneID:9493707" CDS complement(1402286..1402783) /locus_tag="Deba_1250" /note="COGs: COG1592 Rubrerythrin; InterProIPR003251:IPR004039:IPR009040:IPR012347:IPR 009078; KEGG: sat:SYN_00469 rubrerythrin; PFAM: Rubrerythrin; rubredoxin-type Fe(Cys)4 protein; SPTR: Q2LUY1 Rubrerythrin; PFAM: Rubrerythrin" /codon_start=1 /transl_table=11 /product="Rubrerythrin" /protein_id="YP_003807212.1" /db_xref="GI:302342683" /db_xref="GeneID:9493707" /translation="MSKTKANLQEAFAGESQANRRYLAFAKKADDEGYAQVARMFRAA AEAETIHAHNHLRAMKGIGDTAANLREAVEGETHEFKNMYPGMIEDAKAEGEKEALRS FEYANTVEKTHAELYQKLLDALGKDMGDYPYYVCPVCGHTAEGEAPERCPVCNAKGDR FMKVD" misc_feature complement(1402301..1402783) /locus_tag="Deba_1250" /note="Rubrerythrin [Energy production and conversion]; Region: COG1592" /db_xref="CDD:31780" misc_feature complement(1402409..1402777) /locus_tag="Deba_1250" /note="Rubrerythrin, ferritin-like diiron-binding domain; Region: Rubrerythrin; cd01041" /db_xref="CDD:153100" misc_feature complement(order(1402445..1402447,1402454..1402456, 1402547..1402549,1402556..1402561,1402631..1402633, 1402640..1402642,1402718..1402720,1402730..1402732, 1402739..1402741)) /locus_tag="Deba_1250" /note="binuclear metal center [ion binding]; other site" /db_xref="CDD:153100" misc_feature complement(1402292..1402390) /locus_tag="Deba_1250" /note="Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-...; Region: rubredoxin_SM; cd00729" /db_xref="CDD:29432" misc_feature complement(order(1402322..1402324,1402331..1402333, 1402367..1402369,1402376..1402378)) /locus_tag="Deba_1250" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29432" gene 1403017..1403532 /locus_tag="Deba_1251" /db_xref="GeneID:9493708" CDS 1403017..1403532 /locus_tag="Deba_1251" /note="COGs: COG2077 Peroxiredoxin; InterProIPR013740:IPR018219:IPR017936:IPR012335:IPR 012336; KEGG: sfu:Sfum_2340 redoxin domain-containing protein; PFAM: redoxin domain protein; SPTR: A0LKR9 thiol peroxidase (Atypical 2-Cys peroxiredoxin); PFAM: redoxin" /codon_start=1 /transl_table=11 /product="redoxin domain protein" /protein_id="YP_003807213.1" /db_xref="GI:302342684" /db_xref="GeneID:9493708" /translation="MSERKGAITMGGMPLTLIGDEVKVGQKAPDVELLTNDLAPARLS SYLGKVVIISVVPSLDTGVCDIQTRRFNAEAAGLGPDVVILTVSMDLPFAQKRWCGQA GVDQVVTLSDHREAAFGLAYGLLIKELRLLARAVLVVDRQGLLRYSQLVPEVGSEPDY EPALAAARQLV" misc_feature 1403083..1403514 /locus_tag="Deba_1251" /note="Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a...; Region: PRX_Atyp2cys; cd03014" /db_xref="CDD:48563" misc_feature order(1403188..1403190,1403194..1403196,1403284..1403289, 1403305..1403307,1403353..1403355,1403401..1403406) /locus_tag="Deba_1251" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48563" misc_feature order(1403197..1403199,1403206..1403208,1403416..1403418) /locus_tag="Deba_1251" /note="catalytic triad [active]" /db_xref="CDD:48563" misc_feature order(1403206..1403208,1403311..1403313) /locus_tag="Deba_1251" /note="peroxidatic and resolving cysteines [active]" /db_xref="CDD:48563" gene complement(1403575..1404108) /locus_tag="Deba_1252" /db_xref="GeneID:9493709" CDS complement(1403575..1404108) /locus_tag="Deba_1252" /note="KEGG: gbm:Gbem_2839 hypothetical protein; SPTR: B5EIE1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807214.1" /db_xref="GI:302342685" /db_xref="GeneID:9493709" /translation="MGIPAADQEMFATMDRQQLLDYIFMQVKNIWRVDGMYFLGIEKR HDIQEATDVDAECWRYMGKVEAKELKAFLGLDEPGPAEALLLLRHSSWAVSHEQKAFH LRDDGSAVFEVFNCRTQLIRLGKGLDAHPCRQVREGYLQAFVSACNPKLRLETVCCPP DRCQEGDLWCRWIISQG" misc_feature complement(<1403881..>1404108) /locus_tag="Deba_1252" /note="SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to...; Region: SugarP_isomerase; cl00339" /db_xref="CDD:193777" gene 1404257..1404889 /locus_tag="Deba_1253" /db_xref="GeneID:9493710" CDS 1404257..1404889 /locus_tag="Deba_1253" /note="InterPro IPR001647:IPR012287:IPR009057; KEGG: cmi:CMM_0286 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A6FY19 Putative TetR-family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003807215.1" /db_xref="GI:302342686" /db_xref="GeneID:9493710" /translation="MTEDGPTTPGKAQRRRQEAARRLRDEGLKLIARQGLHACKVEEI TRAAGVGKGTFFTHFASKGHFVAALVDHILGDVARRVRPLALAPEDANALLAGVGAVH LRYFQLRPDAASLLVQAGGLAEDSDQGQVVRQRLRQHVDMVAEMLRPAAAAVGWPVER AAELALMVVATSCGFFWFARPLGLGHDTPMALLERLGRAMAGGLAGGAQP" misc_feature 1404329..1404805 /locus_tag="Deba_1253" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 1404329..1404463 /locus_tag="Deba_1253" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(1404880..1406418) /locus_tag="Deba_1254" /db_xref="GeneID:9493711" CDS complement(1404880..1406418) /locus_tag="Deba_1254" /note="COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR000169:IPR016040; KEGG: drt:Dret_1322 NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C8X2G3 NmrA family protein; PFAM: Protein of unknown function (DUF2867); NmrA-like family" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_003807216.1" /db_xref="GI:302342687" /db_xref="GeneID:9493711" /translation="MDDRPVFVTGATGYVGGRLVPRLLASGRRVRAVGRSLEKLACRP WAGHPLVELVKADAMDVASMARAMKGCGAAYYLVHSMNPATADFAKADLQAALNMAAA AEHAGLSRIIYLGGLVPEGPGISHHLASRAQVARALQAGATPVTWLRAAMLLGSGSAS FELMRYLVDRLPVMLTPKWVRTKVQPIAIANALGYLEACLDNPDTIGQAFDIGGPEVL TYEDLFRIYAEEAGLRRRWIIPLPFLNVRLSSYWIHLITPVPAALAQPLAEGLSNEVV MHDQRIRQVAPQELIDCRQAIRRALQRIEQQKVETCWHDAGHVLPPEWVYCADASFAG GTILQAALRSRLAAPAHAVWPAVTSLGGEIGWRHAQFLWALRGWLDELVGGVGLRRGR RHPRELGVGDALDFWRVLEVEKDRRLLLLAEMKLPGQAVLEIQLEPLGPDMCELRVIA RFLPRGLAGLAYWWAALPLHGYVFKGMASALAKASGAPLLSGPAPFDPTEALSCRLRP GAQG" misc_feature complement(1405516..1406403) /locus_tag="Deba_1254" /note="atypical (a) SDRs, subgroup 2; Region: SDR_a2; cd05245" /db_xref="CDD:187556" misc_feature complement(1405555..1406403) /locus_tag="Deba_1254" /note="Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702" /db_xref="CDD:31046" misc_feature complement(order(1405960..1405971,1406026..1406028, 1406038..1406040,1406071..1406079,1406182..1406190, 1406311..1406319,1406374..1406376,1406380..1406385, 1406389..1406391)) /locus_tag="Deba_1254" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187556" misc_feature complement(order(1406026..1406028,1406038..1406040)) /locus_tag="Deba_1254" /note="putative active site [active]" /db_xref="CDD:187556" gene 1406642..1407028 /locus_tag="Deba_1255" /db_xref="GeneID:9493712" CDS 1406642..1407028 /locus_tag="Deba_1255" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dde:Dde_0384 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C0GLF0 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807217.1" /db_xref="GI:302342688" /db_xref="GeneID:9493712" /translation="MPVDKKMKILVVDDFATMRRIIKNTLRQIGYENVVEAEDGEAAV AKLETERIDFIVSDWNMPKMTGLELLRWVRNHDEFKDLPFLMVTAEAQKENILEAAKA RVNNYVVKPFTAETMEEKIEAIMAKL" misc_feature 1406666..1407007 /locus_tag="Deba_1255" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 1406669..1407016 /locus_tag="Deba_1255" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1406678..1406683,1406813..1406815,1406837..1406839, 1406903..1406905,1406960..1406962,1406969..1406974) /locus_tag="Deba_1255" /note="active site" /db_xref="CDD:29071" misc_feature 1406813..1406815 /locus_tag="Deba_1255" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1406822..1406827,1406831..1406839) /locus_tag="Deba_1255" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1406969..1406977 /locus_tag="Deba_1255" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 1407090..1408670 /locus_tag="Deba_1256" /db_xref="GeneID:9493713" CDS 1407090..1408670 /locus_tag="Deba_1256" /note="KEGG: ppf:Pput_3927 hypothetical protein; SPTR: A5W7E1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807218.1" /db_xref="GI:302342689" /db_xref="GeneID:9493713" /translation="MSNIIQIFKKEEFSLGQFAIFFATAIAFNLYFLSNFTLSIDDEI AAFRTDPSAWIGQGRWLLYLVEKQLFPQPVLPYVPNVVFCATMAAAYALLVRAHDLRD DWRIYFSFPVFCAFPIWPFIAAFYPNLPALSFGVLFVCAAAFLHSHSPVLAVLLRREA IGSSLANMTMQAVLLAMALGAYQSLFMLYLAMGLGVIARAALSGVEDDRFSAANAWRA VWHVCLVGCCALAIYLLISRIALWLMPFGTAYIGNFFNLQELVRNPQGLAYLFLSEMR SYYLVASQKYGGSLSAVPWLIAIALVAVAMNVRAKQKSVILFVTLSFFAVLVSPFLLT LITAIEMPVRAFVSVPYVIWFLAICALGSKKLVITVASVLVLIALQFQAVRATGNHAA AVTIALEQDKLLAADLYRRMAGLGFDESKPIMIDIFGRRFCKTAYPAPWSSTFGASFF GWDEGNINRMVRFMRLLGYPKITPLAEKKRLLNTRKFLTMPSWPAPGSVVKQGDVFLI KLSDKSDFIHARSLPAAR" gene complement(1408694..1409404) /locus_tag="Deba_1257" /db_xref="GeneID:9493714" CDS complement(1408694..1409404) /locus_tag="Deba_1257" /note="COGs: COG5587 conserved hypothetical protein; InterPro IPR012808:IPR015996; KEGG: sun:SUN_1370 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: B6BL81 Putative uncharacterized protein; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807219.1" /db_xref="GI:302342690" /db_xref="GeneID:9493714" /translation="MSPTDRFNGFSLQAEDFFRALAQNNNKPWFEEHRKQYDELILRP AKALVAELSPPMAQMVPGIHAEPMVNKSIFKIFRDTRFARDKSPFKDHLGLWLWEGQG PRMECSGFYLHFEPGRLMLGAGIYGFSRAQIEQYRSDVLHPQRGPALERALAQVGARG GVVDGQKLKRVPRGVDPDHPRAALARYTGLWVGVDEPLPDAARSAALVDYCLERWSGM LPLHFWLAEMAERALAAA" misc_feature complement(1408742..1409359) /locus_tag="Deba_1257" /note="Conserved hypothetical protein (DUF2461); Region: DUF2461; cl02374" /db_xref="CDD:194301" gene complement(1409537..1412197) /locus_tag="Deba_1258" /db_xref="GeneID:9493715" CDS complement(1409537..1412197) /locus_tag="Deba_1258" /note="COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR015590:IPR001670:IPR018211:IPR016160:IPR 016162:IPR016161; KEGG: dal:Dalk_3586 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; iron-containing alcohol dehydrogenase; SPTR: B8FGP4 Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="Aldehyde Dehydrogenase" /protein_id="YP_003807220.1" /db_xref="GI:302342691" /db_xref="GeneID:9493715" /translation="MEHYKLFIDGQFVEAADGATFETIDPGTGLPMATVAQAGAAEAE AAIMAARRAFERSGWPQMPPMERSRLVMELADRMTNHGVRLAMTESMNSGGVVARTAT DVLLGASMMRNLAYYAAKSFPWTEELQPSGNPFFPGRDYVRREAMGVCVGIIPWNFPL TMALWKVAQAIIMGNTIVLKPASNTPLSALILAEVVKESPIPDGVVNVIAGPGGALGR VLCTHPEVDKIAFTGSTEVGRQIMKLASDTVKKVTLELGGKSANIILDDARLDMAVDG GLYGTFFHGGQVCESGTRLLVHAKIYDQFMERYLARVKDIRIGYQLDYATQMGPLVSQ TQLNTVESYVQIGKDEGAELLCGGKRAVVPGLEGGFFYEPTIFGGVDNKMRIAQEEIF GPVVSVIKFDDDDEAIAIANDSIYGLAGGVWTTDTGRAERIAAGVRTGTMWVNNYHAF GDFCPFGGYKQSGVGRELGHHGLAEYTEVKRVHVAATAEPSAHMGFQLLLDQPKAASF QYITPTKVNCGPGAVASICADIARMGCQRAFVLTDAGVLAVGLAAKVIAALGGYCVGV FSDIPQDTSLATVDAAADAARAAKADLIVSVGGGSVIDTAKWVTVILDQGGKAVDHYA FFRLTKPVTPHIVVPTTVGTGSEATAVSVVRHEGLSRKVFIADPYIYPQVAVLDPCLV ADLPAGLMVATAMDAMTHACEAMMSKTANPISDGHALQAIRLIARNLPKAASGDRDLR VMSNLQVAATVAGKAFAVAGIGLAHAMAHTVGALYGVPHGAACGILLPKVMRFNVDHA TEALVEIAAALGVNVLDIAPRDAALAGADALEQLMRAVEAPMSLKAMGVPEEALAECA MHALVDPSNLTNPRPVADPMAVLEVYQQAF" misc_feature complement(1410746..1412191) /locus_tag="Deba_1258" /note="NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961" /db_xref="CDD:196287" misc_feature complement(1410752..1412155) /locus_tag="Deba_1258" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(order(1410830..1410832,1410944..1410946, 1411022..1411024,1411028..1411030,1411331..1411333, 1411427..1411435,1411475..1411480,1411487..1411489, 1411496..1411507,1411649..1411654,1411658..1411660, 1411703..1411705,1411727..1411741)) /locus_tag="Deba_1258" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143395" misc_feature complement(order(1411331..1411333,1411340..1411342, 1411433..1411435,1411727..1411729)) /locus_tag="Deba_1258" /note="catalytic residues [active]" /db_xref="CDD:143395" misc_feature complement(1409540..1410670) /locus_tag="Deba_1258" /note="Alcohol dehydrogenase, class IV [Energy production and conversion]; Region: EutG; COG1454" /db_xref="CDD:31643" misc_feature complement(1409585..1410661) /locus_tag="Deba_1258" /note="Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH); Region: DHQ_Fe-ADH; cl02872" /db_xref="CDD:186536" misc_feature complement(order(1409861..1409863,1409891..1409893, 1409903..1409905,1410098..1410100,1410110..1410112, 1410131..1410133,1410155..1410157,1410209..1410214, 1410269..1410271,1410275..1410280,1410377..1410379, 1410386..1410388,1410395..1410403,1410569..1410571)) /locus_tag="Deba_1258" /note="active site" /db_xref="CDD:173927" misc_feature complement(order(1409861..1409863,1410155..1410157, 1410269..1410271,1410275..1410280,1410395..1410403, 1410569..1410571)) /locus_tag="Deba_1258" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:173927" misc_feature complement(order(1409861..1409863,1409903..1409905, 1410110..1410112)) /locus_tag="Deba_1258" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173927" gene 1412423..1413370 /locus_tag="Deba_1259" /db_xref="GeneID:9493716" CDS 1412423..1413370 /locus_tag="Deba_1259" /note="COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: pmy:Pmen_1368 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: A4XS17 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_003807221.1" /db_xref="GI:302342692" /db_xref="GeneID:9493716" /translation="MIDVRQLSHAAALAKFGNYRRAAQALFITQPALTKSIQNLEREL DVRLFERRADGVTPTEFGAAIVAAAARILPQIDDIENEMELLKGLGKGRLNVGCDPFF AEVYMAPALGSLLARHPSLRIRAEVIAWDVILELLLERKLDVVIGVPTENLDPSLSFI KIDGFPEITYFCRPGHPLLGRGPIAPRELAPFPTVGIKTHPWWLKWFAESIDEAVESE AVTHRHFVQCDNLSVIMTIVKSSDAISGAASGVVEKDIVAGRLRRLPLILPPYPPLSF GLAYLRERIMAPAARALIDELVALAQSLGWAVDAPGSRP" misc_feature 1412426..1413337 /locus_tag="Deba_1259" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 1412435..1412608 /locus_tag="Deba_1259" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1412699..1413313 /locus_tag="Deba_1259" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(1412744..1412749,1412753..1412758,1412765..1412767, 1412777..1412779,1412783..1412803,1413095..1413112, 1413128..1413133,1413137..1413142) /locus_tag="Deba_1259" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(1413437..1414684) /locus_tag="Deba_1260" /db_xref="GeneID:9493717" CDS complement(1413437..1414684) /locus_tag="Deba_1260" /note="KEGG: pca:Pcar_0881 hypothetical protein; SPTR: Q3A671 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807222.1" /db_xref="GI:302342693" /db_xref="GeneID:9493717" /translation="MKVKLKVAAWLAAAAMLVTPAAAFAADADTQALLNELRALKERV STLEQALEKANTSAADAQKAAQEAQATSAHSLKMSEQAQLAKGEQVAGGLLSDAGKRL KIYGAVELEGAYSNFKPKHGKSASESDFTLATAEVFIEADINKYVKGLVHMLYEEGDT DPMNIDEAYILLGQTDDIPAYFLGGRMYPAIGLFESNLISDPITQNVFETQATAAEVG WAQDWFNVGVGIFNSDVHESSDAPDNNINTFYARAQFDAPEGALGEDVDLNFGLAYTN NIASGNLSEYVVDQSLQDLVAGWSAMLSAQYMCVAFTAEYISAIDDFKAGELDYMTDS DGKPYAYNIELAYMPFEEWTFAARYEGSDNLGDKEPEHQFGVGASWMFLPDTTLSVEY LHGEFQDTEDERDLFTTQLAIGF" gene complement(1414724..1414852) /locus_tag="Deba_1261" /db_xref="GeneID:9493718" CDS complement(1414724..1414852) /locus_tag="Deba_1261" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807223.1" /db_xref="GI:302342694" /db_xref="GeneID:9493718" /translation="MSENNGGAPQKPGLEAGKGCGCNGDCRNCRCKEDKGEKTARD" gene complement(1414921..1415094) /locus_tag="Deba_1262" /db_xref="GeneID:9493719" CDS complement(1414921..1415094) /locus_tag="Deba_1262" /note="KEGG: vpr:Vpar_0633 hypothetical protein; SPTR: C4FQA0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807224.1" /db_xref="GI:302342695" /db_xref="GeneID:9493719" /translation="MLDLVVAIVVVAGAVGWLGWRYWRQMSGKTGGDCGCGCGGSCEQ KSAKRDGCDCQGH" gene complement(1415100..1417241) /locus_tag="Deba_1263" /db_xref="GeneID:9493720" CDS complement(1415100..1417241) /locus_tag="Deba_1263" /note="COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011619:IPR011642:IPR011640:IPR 006073:IPR005225:IPR003373; KEGG: dal:Dalk_4622 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: B8FNL9 Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein B" /protein_id="YP_003807225.1" /db_xref="GI:302342696" /db_xref="GeneID:9493720" /translation="MTEKRGFTVALAGNPNSGKTSMFNALTGARQHVGNYPGVTVEKK WGQVRHGQQTIEVVDLPGTYSLTAYSLEEVVARNFIIQQRPDVIIDVVDAANLERNLY LAVQFMELGAPLVIALNMIDVAEARGLQIDVAKLSQLLGVPVVPTVARGGKGMKELLD AAAQVAAERKEWKPLELSYGHDVDQALAKLVENFSGQSLAWGPLSPRWVGVKLLEGDE EVIRQVGGDPGLADKLEPLRQKLADHIAKTADDDPAGVISDGRYGYIGGVYRQAVRET RARRLELSDKIDKVLTNRLIGPLFLLAVLYGVYEFVFWASEAPVAWLEGLIGWLGGAA EATLPDGFVRSLVVSGVIDGVGGVLGFVPLIMFMFLAIAFMEDTGYLARVAFLVDRVL RGFGLHGNSVMAMIVSGGISGGCAVPGVMATRTLKDPKARLATILTVPMMNCGAKLPV YALLISAFFAAHQAQMMFALTLVSWSIALLAARLLRWTVLRGEAAPFVMELPPYRLPT WRGLAIHTWERTWQYIKKAGTVILGISIVMWAMMSFPGLPEEQAAQWEQKVAAAASDE AKATVEQDMAQAQLAHSLAGRIGQGLDGLMSPLGFDWRTNVALVGGFAAKEVVVATLG TAYSMGEVDPEETEGLAQRLAREPGWGPLKAMALMIFVMIYAPCFVTVAVIKKEAGSW KWALFSVAYTTALAYVLALAVYRGGMALGLG" misc_feature complement(1415178..1417220) /locus_tag="Deba_1263" /note="Fe2+ transport system protein B [Inorganic ion transport and metabolism]; Region: FeoB; COG0370" /db_xref="CDD:30719" misc_feature complement(1416738..1417211) /locus_tag="Deba_1263" /note="Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this...; Region: FeoB; cd01879" /db_xref="CDD:133280" misc_feature complement(1417182..1417205) /locus_tag="Deba_1263" /note="G1 box; other site" /db_xref="CDD:133280" misc_feature complement(order(1416792..1416800,1416876..1416878, 1416882..1416887,1417179..1417190,1417194..1417196)) /locus_tag="Deba_1263" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133280" misc_feature complement(1417113..1417127) /locus_tag="Deba_1263" /note="Switch I region; other site" /db_xref="CDD:133280" misc_feature complement(1417122..1417124) /locus_tag="Deba_1263" /note="G2 box; other site" /db_xref="CDD:133280" misc_feature complement(1417056..1417067) /locus_tag="Deba_1263" /note="G3 box; other site" /db_xref="CDD:133280" misc_feature complement(order(1416987..1416992,1417002..1417058)) /locus_tag="Deba_1263" /note="Switch II region; other site" /db_xref="CDD:133280" misc_feature complement(1416876..1416887) /locus_tag="Deba_1263" /note="G4 box; other site" /db_xref="CDD:133280" misc_feature complement(1416792..1416800) /locus_tag="Deba_1263" /note="G5 box; other site" /db_xref="CDD:133280" misc_feature complement(1415877..1416155) /locus_tag="Deba_1263" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" misc_feature complement(1415685..1415834) /locus_tag="Deba_1263" /note="Ferrous iron transport protein B C terminus; Region: FeoB_C; pfam07664" /db_xref="CDD:191804" misc_feature complement(1415196..>1415495) /locus_tag="Deba_1263" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" gene complement(1417238..1417483) /locus_tag="Deba_1264" /db_xref="GeneID:9493721" CDS complement(1417238..1417483) /locus_tag="Deba_1264" /note="COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167:IPR008988; KEGG: dvm:DvMF_1016 FeoA family protein; PFAM: FeoA family protein; SPTR: B8DPR4 FeoA family protein; PFAM: FeoA domain" /codon_start=1 /transl_table=11 /product="FeoA family protein" /protein_id="YP_003807226.1" /db_xref="GI:302342697" /db_xref="GeneID:9493721" /translation="MNAVESLRRLKVGDVAVIVKVAAGGELGRHIRDMGLAPGVEVMV MGRAPLNDPVELKVKGYCLALRNNEADHIMVRLEGRP" misc_feature complement(1417253..1417468) /locus_tag="Deba_1264" /note="FeoA domain; Region: FeoA; cl00838" /db_xref="CDD:193951" gene complement(1417660..1418577) /locus_tag="Deba_1265" /db_xref="GeneID:9493722" CDS complement(1417660..1418577) /locus_tag="Deba_1265" /note="KEGG: dba:Dbac_1912 hypothetical protein; SPTR: C7LXD2 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2325)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807227.1" /db_xref="GI:302342698" /db_xref="GeneID:9493722" /translation="MDFATLLRKVKLVMPSLINTNAAKQPETHPDWHCDQLTLTVLLN GALGPKAMAEMLAATEPGSAAQGMTVHDLLPRLHLACREVPAVAGAVAAHLDRRFRRE INKLRRLNPEAAQARLIGGGYRVGALWACLRHQNEAVRGMAGPLAAEMLGQGMACLRP WLVSDDHARQMGLDAGQRTSLGRGGRRRSGGRGACAVSAQCACCPLQGLKVAVIGGLE RMEGSYCQAIDKLGGQCSFHPGHVRGGSRRLRQIVIKSDVVVFITSVNSHGALATVKA ECKKAGKPFIALGRTGVGSLEEMLLEFAA" misc_feature complement(1417663..1417950) /locus_tag="Deba_1265" /note="Uncharacterized protein conserved in bacteria (DUF2325); Region: DUF2325; cl01811" /db_xref="CDD:154601" gene 1418720..1419250 /locus_tag="Deba_1266" /db_xref="GeneID:9493723" CDS 1418720..1419250 /locus_tag="Deba_1266" /note="COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR011991:IPR000835:IPR001808; KEGG: sfu:Sfum_3768 DtxR family iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor; regulatory protein Crp; regulatory protein MarR; SPTR: A0LPT5 Iron (Metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain" /codon_start=1 /transl_table=11 /product="iron (metal) dependent repressor, DtxR family" /protein_id="YP_003807228.1" /db_xref="GI:302342699" /db_xref="GeneID:9493723" /translation="MSTTKHSGDHQELTPQLEDYLETIALLQEQSPVARAKDIADRLG VTPATVTSALRSLAEKGLINYQPYSHITLTDQGRQRAQDVLRRHEVLSEFFGVVLRAP SRQAEDNACRAEHVLDPDIIERMVRFLSFLKNCPRTGQVWREAFERFCHEKPDHADCK ECVGRCLAELYAPPAE" misc_feature 1418747..1419205 /locus_tag="Deba_1266" /note="Mn-dependent transcriptional regulator [Transcription]; Region: TroR; COG1321" /db_xref="CDD:31512" misc_feature 1418759..1418929 /locus_tag="Deba_1266" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1418939..1419151 /locus_tag="Deba_1266" /note="Iron dependent repressor, metal binding and dimerisation domain; Region: Fe_dep_repr_C; pfam02742" /db_xref="CDD:145737" gene complement(1419229..1419936) /locus_tag="Deba_1267" /db_xref="GeneID:9493724" CDS complement(1419229..1419936) /locus_tag="Deba_1267" /note="COGs: COG4148 ABC-type molybdate transport system ATPase component; InterPro IPR003439:IPR017871:IPR011868:IPR003593; KEGG: mag:amb3403 ABC-type molybdate transport system, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q2RWI9 Molybdenum import ATP-binding protein modC; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter; TIGRFAM: molybdenum ABC transporter, ATP-binding protein" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter, ATPase subunit" /protein_id="YP_003807229.1" /db_xref="GI:302342700" /db_xref="GeneID:9493724" /translation="MFLAKLRKRLGELDLEVEFCRDAPGVTALFGPSGAGKTSVVGML AGLTRPDAGRVELDGRALYDSATGVNLPPEKRRVGYVFQEGRLFPHLSVRANLRYGQR LTPPGQAWADFEQVVEMLGLEPLLRRRPGRLSGGEKQRVAIGRALLASPRLLLLDEPL ASLDAQRKDEVLHYLGRLRGRMAIPVIYVSHQPEEIVALADAVVHIQAGRVTARDSLE LFRRRLAAGEAHSAGGA" misc_feature complement(1419292..1419936) /locus_tag="Deba_1267" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1419271..1419921) /locus_tag="Deba_1267" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature complement(1419823..1419846) /locus_tag="Deba_1267" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1419364..1419366,1419463..1419468, 1419688..1419690,1419820..1419828,1419832..1419837)) /locus_tag="Deba_1267" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1419688..1419699) /locus_tag="Deba_1267" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1419511..1419540) /locus_tag="Deba_1267" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1419463..1419480) /locus_tag="Deba_1267" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1419445..1419456) /locus_tag="Deba_1267" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1419358..1419378) /locus_tag="Deba_1267" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(1419941..1420639) /locus_tag="Deba_1268" /db_xref="GeneID:9493725" CDS complement(1419941..1420639) /locus_tag="Deba_1268" /note="COGs: COG4149 ABC-type molybdate transport system permease component; InterPro IPR000515:IPR011867; KEGG: mag:amb3404 ABC-type molybdate transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q2W1R7 ABC-type molybdate transport system, permease component; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: molybdate ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter, inner membrane subunit" /protein_id="YP_003807230.1" /db_xref="GI:302342701" /db_xref="GeneID:9493725" /translation="MDIFALGPAEWQAIRLSLWVALWAVAGSLGPAIAVAWILARLRF PGKTLLDGLVHLPLVVPPVVTGYLLLVILGRRGVVGSWLHDVFGLNFMFDWKGAAVAS AVVAFPLMVRAIRQSVEAVDVGLEQAARTLGAGRWRVFLTIILPLALPGVLAGLVLAF ARGLGEFGATITFVSNIPGQTRTLPLALYSALQAPGGEEVAARLCVVAMVLALGALLA SELLSRRLAARLGG" misc_feature complement(1420025..1420630) /locus_tag="Deba_1268" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene complement(1420722..1421498) /locus_tag="Deba_1269" /db_xref="GeneID:9493726" CDS complement(1420722..1421498) /locus_tag="Deba_1269" /note="COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR006059:IPR010916:IPR005950; KEGG: dat:HRM2_09850 ModA4; PFAM: extracellular solute-binding protein family 1; SPTR: C0QL11 ModA4; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein" /codon_start=1 /transl_table=11 /product="molybdenum ABC transporter, periplasmic molybdate-binding protein" /protein_id="YP_003807231.1" /db_xref="GI:302342702" /db_xref="GeneID:9493726" /translation="MLRAKVAALIAGLTLLLAAGPGAAQQLETVTVFAAASTTNAMTD IANAYEAAGKAKVVCSFASSSTLAKQIANGAPVHVFLSANPAWMNYLAQKKLLAEGSR IDLLGNQLVLIAPVASTIQGEVKPGFPLTEWLAGGRLAMGDPDHVPVGIYAREALTNL GVWPQLGPDNLALAANVRAALALVERDEAPLGVVYATDAAISDKVRVVAAFPADSHKP VVYPVALIAGRDTVAAKGFAEFLRSEAAAEVFKKYGFVVK" misc_feature complement(1420734..1421423) /locus_tag="Deba_1269" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1422041..1423090) /locus_tag="Deba_1270" /db_xref="GeneID:9493727" CDS complement(1422041..1423090) /locus_tag="Deba_1270" /note="InterPro IPR001584:IPR012337:IPR009057; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain" /codon_start=1 /transl_table=11 /product="integrase catalytic region" /protein_id="YP_003807232.1" /db_xref="GI:302342703" /db_xref="GeneID:9493727" /translation="MTTEKKVARRKLSLLELAGELSNVSRACKLMGYSRQQFYEIRRN FQTYGAQGLVDRLPGPKGPHPNRVEAEVEAAIMAYSLEYPTHGALRVSQQLALRGVQV SSGGVRGVWSRHEMLTRHERLLRLEQSVRAQDIQLSDEQIRALERFSPEFRDRHIEAR HTGALVAVDTFFVGALKGVGKVYLQSVIDCHSRHAWGRLYTSKLPVTAVHVLNEEVLP CFEAHDAVIETVLSDNGREFCGRPDQHPYELFLQLEGIEHRTTRVRRPQSNGFVERLH RTLLDEHFRIKGRQKWYETLDEMQADLDEYLRHYNHERAHQGRNMNGRTPSQAFLEGL PGRKKPKEKASQKAA" misc_feature complement(1422245..1422619) /locus_tag="Deba_1270" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1423812..1424012) /locus_tag="Deba_1271" /db_xref="GeneID:9493728" CDS complement(1423812..1424012) /locus_tag="Deba_1271" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807233.1" /db_xref="GI:302342704" /db_xref="GeneID:9493728" /translation="MTECRCPACLFCEELSNDVVRCSNADVAYEVDWVNTYAQLGYLE FPAPTEPPCFWFVPKEKDLLPY" gene complement(1424027..1425052) /locus_tag="Deba_1272" /db_xref="GeneID:9493729" CDS complement(1424027..1425052) /locus_tag="Deba_1272" /note="COGs: COG5345 conserved hypothetical protein; InterPro IPR016936; KEGG: kko:Kkor_0593 hypothetical protein; PFAM: hypothetical protein; SPTR: C0N6C1 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2333)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807234.1" /db_xref="GI:302342705" /db_xref="GeneID:9493729" /translation="MHAAQEEKSKGGRLLGWFNPLAAETSLAGRAARGLALLVLLYCL AAPFICWYDYARAFKDPFDPVPADAAKKPPAPGVVFTNTLVTMGDQLLEAWLPNDKLY PTILLDNPQNYQLGVLETMRYATRVLRDDLSRQRTTDKIDPNADQAFTAFSNNPNLWL FPAAEAKFSSGVKALREYEQGLQNGSSTFYPRTDNLVVLMYQFASLLGGESTRLANAP RDRILVASQEAAGDPNTEDTKQTYVKVPWSQIDDNFYHARGVAYAMRQILMASRYEFR EVIKAKRSTDMIDSVIEDLRLAQFEPCFVLNGSRDSMFANHSLTLMATLQDARQKLRS FADTMRD" misc_feature complement(1424084..1424812) /locus_tag="Deba_1272" /note="Uncharacterized protein conserved in bacteria (DUF2333); Region: DUF2333; cl11978" /db_xref="CDD:159658" gene complement(1425108..1425638) /locus_tag="Deba_1273" /db_xref="GeneID:9493730" CDS complement(1425108..1425638) /locus_tag="Deba_1273" /note="COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004820:IPR014729:IPR011914:IPR004821; KEGG: cte:CT0209 cytidylyltransferase family protein; PFAM: cytidylyltransferase; SPTR: Q8KFW1 Cytidylyltransferase family protein; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain" /codon_start=1 /transl_table=11 /product="rfaE bifunctional protein" /protein_id="YP_003807235.1" /db_xref="GI:302342706" /db_xref="GeneID:9493730" /translation="MTTPEPDTRRKIQSAQQVAQAAQAVRATGGKVVFTNGCFDLLHA GHVRYLNQARALGQMLVLGLNSDESVRTLGKGDERPLVPQAQRAEVVAALQAVDAVVV FDDPTPAALIEIIAPDILVKGGDWPVDKIVGAEFVLAQGGVVLSIPLVQGLSTTAIAQ KIARLALDKSGASRSM" misc_feature complement(1425153..1425554) /locus_tag="Deba_1273" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(order(1425171..1425182,1425501..1425512)) /locus_tag="Deba_1273" /note="active site" /db_xref="CDD:173912" misc_feature complement(order(1425177..1425179,1425501..1425503, 1425510..1425512)) /locus_tag="Deba_1273" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(1425501..1425512) /locus_tag="Deba_1273" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature complement(1425171..1425182) /locus_tag="Deba_1273" /note="KMSKS motif; other site" /db_xref="CDD:173912" gene complement(1425625..1426302) /locus_tag="Deba_1274" /db_xref="GeneID:9493731" CDS complement(1425625..1426302) /locus_tag="Deba_1274" /note="COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: ajs:Ajs_3540 ComF family protein; PFAM: phosphoribosyltransferase; SPTR: A1WBM8 ComF family protein; PFAM: phosphoribosyl transferase domain; TIGRFAM: comF family protein" /codon_start=1 /transl_table=11 /product="phosphoribosyltransferase" /protein_id="YP_003807236.1" /db_xref="GI:302342707" /db_xref="GeneID:9493731" /translation="MPPSLAALGRGLLELAFPARCPACGRPAHGGGLCAACLAQVEPT VEPSLEPIDSLSFAVAKHAGPAAQCVRAFKYRRDWAAGRALALLLCERAPAEMLGWAE IICPVPLHRLRLLGRGFNQAAWLARRLDQGQGRLRARLLLRLRHTRPQARLNGQERLA NVSGAFAVNPRLAAQVDGRRVLLIDDVQTTGATLHECTMALLAAGAVQVRALTVSRAM GEIHDNP" misc_feature complement(1425655..1426128) /locus_tag="Deba_1274" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene complement(1426307..1427527) /locus_tag="Deba_1275" /db_xref="GeneID:9493732" CDS complement(1426307..1427527) /locus_tag="Deba_1275" /EC_number="1.1.1.42" /note="COGs: COG0538 isocitrate dehydrogenase; InterPro IPR001804:IPR019818; KEGG: dol:Dole_1908 isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: isocitrate dehydrogenase (NADP(+)); SPTR: A8ZSH5 isocitrate dehydrogenase [NADP]; PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type" /codon_start=1 /transl_table=11 /product="isocitrate dehydrogenase (NADP(+))" /protein_id="YP_003807237.1" /db_xref="GI:302342708" /db_xref="GeneID:9493732" /translation="MSHTLGNLPQGAEPITIGPDGKPQVPAIPAVGYIEGDGTGPDIW RATKLILEAAVAKAYGDQRRIAWVELLAGEKALEQTGQYLPQKTIEDIAALKVSIKGP LTTPVGGGFRSLNVTLRQVLDLYACIRPVRHIPGAPSPVKRPEAVDMVIYRENTEDVY AGLEWRAGSPEAKRLIDFLASELGAVVDPQAGVGIKPMSARCTKRLVAMAIDYALARG RQSVTLVHKGNIMKFTEGAFRDWGYELAAEKYAGRVVREGQEEPGKLVIKDRIADAMF QQVLLRPDEYDVLAMPNLNGDYLSDALAAQVGGLGMAPGANVGDECAMFEATHGTAPK YAGQDKVNPGSLVLSGAMMLEHMGWVEAADLIPAALGRAVQDGMVTYDLARQISGATE LSCSGFAQAVVERL" misc_feature complement(1426313..1427509) /locus_tag="Deba_1275" /note="isocitrate dehydrogenase; Validated; Region: PRK07362" /db_xref="CDD:180944" misc_feature complement(1426310..1427503) /locus_tag="Deba_1275" /note="Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445" /db_xref="CDD:193821" gene complement(1427532..1427945) /locus_tag="Deba_1276" /db_xref="GeneID:9493733" CDS complement(1427532..1427945) /locus_tag="Deba_1276" /note="InterPro IPR005358; KEGG: drt:Dret_1006 protein of unknown function UPF0153; PFAM: protein of unknown function UPF0153; SPTR: C8X1J7 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807238.1" /db_xref="GI:302342709" /db_xref="GeneID:9493733" /translation="MTNHEQKNSRPLAFECLRCSQCCTGEGAAWLLREELPAAAALLD LAPEAFVELYCRRRGEKYEIICDENGVCILLGPDGCRIHQAKPRICRAWPWLGAMLKN ASAFEEAKLVCPGINPQASHAEFLAQYEAEKQKEK" gene complement(1427991..1429130) /locus_tag="Deba_1277" /db_xref="GeneID:9493734" CDS complement(1427991..1429130) /locus_tag="Deba_1277" /note="COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286:IPR003084; KEGG: gme:Gmet_1739 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; PRIAM: histone deacetylase; SPTR: Q39UV4 histone deacetylase superfamily; PFAM: histone deacetylase domain" /codon_start=1 /transl_table=11 /product="histone deacetylase" /protein_id="YP_003807239.1" /db_xref="GI:302342710" /db_xref="GeneID:9493734" /translation="MIGPNLGAAYVYSDEFARFDFGPGHPLRVQRLALAHQLITDCGL DAPALPAFPASDDQMATFHDRRYLDTLRELSESPVPPPFAMFGLGGKDNPVFPGVYEW AALSAGASLAAAELLLAGRPAVFSMAGGMHHAMAARASGFCYVNDINLAIMRLLAQGR RVVYIDLDAHHGDGVQWAFYGSDKVLCISLHQNPETLFPGSGVLEEIGRGQGVGFNVN IPLWPHTDDDLYVRAFEELVPPLVEAFRPDCVVSQTGVDSLMGDPLANLNLTTQGLGR CLLDLRQMAQGRWLALGGGGYDLANVARGWALAWAIISGQEDKLPEEMPKNFVQAHKL GRDRRMLLDPPGALRGRYWPRAAEEAKSSIKFVREKVFPLLGAKG" misc_feature complement(1428162..1429109) /locus_tag="Deba_1277" /note="Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]; Region: AcuC; COG0123" /db_xref="CDD:30472" misc_feature complement(1428189..1429064) /locus_tag="Deba_1277" /note="Histone deacetylase domain; Region: Hist_deacetyl; cl02986" /db_xref="CDD:194501" gene 1429352..1429801 /locus_tag="Deba_1278" /db_xref="GeneID:9493735" CDS 1429352..1429801 /locus_tag="Deba_1278" /note="COGs: COG1610 conserved hypothetical protein; InterPro IPR019004:IPR003789; KEGG: fre:Franean1_0338 hypothetical protein; PFAM: Protein of unknown function; SPTR: A8LF59 Putative uncharacterized protein; PFAM: Yqey-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807240.1" /db_xref="GI:302342711" /db_xref="GeneID:9493735" /translation="MARGSQIEADLKAALKRRDDLTVSCLRMARAALAGKAKDLRRPL EEQEEIQVLKGLAKQRKEAAEQFQAGGRPELAQRELSELAIIEGYLPAQMGQAELESV LDQVFAELRPQGPKDMGNVMKAVMARLAGAADGKLVNQLVRQRMQAS" misc_feature 1429364..1429786 /locus_tag="Deba_1278" /note="GatB domain; Region: GatB_Yqey; cl11497" /db_xref="CDD:159498" gene 1429887..1432322 /locus_tag="Deba_1279" /db_xref="GeneID:9493736" CDS 1429887..1432322 /locus_tag="Deba_1279" /note="COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR000432:IPR002625:IPR005747:IPR007696; KEGG: pth:PTH_1939 mismatch repair ATPase; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2; SPTR: A5D0W6 MutS2 protein; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein" /codon_start=1 /transl_table=11 /product="Smr protein/MutS2" /protein_id="YP_003807241.1" /db_xref="GI:302342712" /db_xref="GeneID:9493736" /translation="MRADEAARGLCCDEQTMAALELPELLAIVAGLTQSPLGATRARR LRPCNDLPTVARRLRRLSQLCDLLDQSGPPSLDGLADVGPLLARLGAEGAFLTCPELE RVAQFLSSVSSAAAFLDPSESLFDELFRLRNSFMPMPDLAKRIRSVIGPGGSVASSAS PELARVRREMGRARDSLRGQLNALFSQSGLGGVFSDQIVTQRADRFVVPVKVEMKSRL SGIIHDASGTGATCFVEPLEAVEGNNRLALLRRQEHEEELRVLRETALEISFNLGALH EAQDALAKLDCLLAQAVFCRRLDCAEPRLHAGDELELLKARHPLLAWRQAQGRGRVAP VGLSLGGACRTLIISGANAGGKTVALKTAGLITLMVMCGLRAPVEAGSRLPIFRQVMA EIGDDQDIDRELSTFSAHATRLAWMTRLAGRGSLCLIDELGAATDPGEGAALGMAVLD WLRQKGALAMVTTHFHRLKAYAAAAEWTENASVSFNQATGVPTYQLHYGAPGFSDALA VSRRLGFPPEVLARAEANLDSGERQTVALLQEAESIRQQAAEERAKAGRERLAAEEER QKARLLLRQAREQKAGALAEGKRRVREVAARLEKRLEELLGQAEQAKAADQPVKPGKL KQEVYQARREALEEVERVTAPPKADAPQAPVDAFAALKAGAAVRAIALDQKGVLLEDA RPGAETVAVSVGVSGVRVMIPVNQLEPLGGAREDNRPKPGVSVQVQAASGLDLNLVGL RVEEALDKVDKAVDQAVVAGRSRLCVVHGVGTGRLRAAVREFLRGHPFVAGVRQAEPR QGGAGVTVAELRE" misc_feature 1429926..>1431470 /locus_tag="Deba_1279" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:179009" misc_feature 1430820..1431431 /locus_tag="Deba_1279" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1430934..1430957 /locus_tag="Deba_1279" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(1430943..1430948,1430952..1430960,1431069..1431071, 1431174..1431179,1431276..1431278) /locus_tag="Deba_1279" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 1431060..1431071 /locus_tag="Deba_1279" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 1431084..1431125 /locus_tag="Deba_1279" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 1431162..1431179 /locus_tag="Deba_1279" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 1431186..1431197 /locus_tag="Deba_1279" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 1431264..1431284 /locus_tag="Deba_1279" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature <1431819..1432316 /locus_tag="Deba_1279" /note="recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409" /db_xref="CDD:179009" misc_feature 1432089..1432316 /locus_tag="Deba_1279" /note="Smr domain; Region: Smr; cl02619" /db_xref="CDD:194381" gene 1432329..1434089 /locus_tag="Deba_1280" /db_xref="GeneID:9493737" CDS 1432329..1434089 /locus_tag="Deba_1280" /note="COGs: COG0358 DNA primase; InterProIPR002694:IPR013264:IPR006171:IPR019475:IPR 005829:IPR006295:IPR006154; KEGG: gsu:GSU3090 DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase, DnaB-helicase binding domain; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; SPTR: Q748B7 DNA primase; TIGRFAM: DNA primase; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core" /codon_start=1 /transl_table=11 /product="DNA primase" /protein_id="YP_003807242.1" /db_xref="GI:302342713" /db_xref="GeneID:9493737" /translation="MARIPDDVIDQVRQMADIVEVVGRRVMLRQAGRTFKGVCPFHGD KDPSLVVNRERGTWHCFGCGEGGNVFGFVMKDQGLSFPEAVRELAQGLGIIIPEPDMD ESARRASDEKEKLLRVLEVAGKFFVEQLHGPAGAEARRYLREKRGLDRRTIDEFGLGY ALDSWDGLRRHLLGRGVSEDLALRAGLLAPRESGGSYDRFRGRVVFPIRDDRGRVVSF GGRVLGQGEPKYLNGPESPLFFKSGALYNFDRARQHMHRKGRAVVVEGYFDVITMAAF GFEETVAPMGTALTAQQARLLARAAPRVILVFDGDEAGRKAARRSLDVFLGEGVHPLV HLLPGGEDPDSFLRAQGAGPLDEALERARPLAEATIEQIVRAGDAKSPEGKSAIVAQA GELIKAMGDPVAAWGYLEDLARRLALPPRVVAASLGLPVPGGPPSRPAPARCAPAPEG QRDERAILEMALCSAEAARHLVGCGILESLRDPLLAKIGRAVANVLDRTGSPDPAAVI QQLEDPRLQAMVSGLASRGLCLDGVDAGRQAQLMAQGLRRRRLRQERALLAQAIAEAE RAGDAQRVDHLLAQRQRLVD" misc_feature 1432335..1433576 /locus_tag="Deba_1280" /note="DNA primase, catalytic core; Region: dnaG; TIGR01391" /db_xref="CDD:162334" misc_feature 1432338..1432619 /locus_tag="Deba_1280" /note="CHC2 zinc finger; Region: zf-CHC2; cl02597" /db_xref="CDD:141551" misc_feature 1432701..1433084 /locus_tag="Deba_1280" /note="DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275" /db_xref="CDD:191985" misc_feature 1433103..1433330 /locus_tag="Deba_1280" /note="TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364" /db_xref="CDD:173784" misc_feature order(1433121..1433126,1433133..1433135,1433253..1433255, 1433259..1433261,1433265..1433267) /locus_tag="Deba_1280" /note="active site" /db_xref="CDD:173784" misc_feature order(1433121..1433123,1433253..1433255) /locus_tag="Deba_1280" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173784" misc_feature order(1433127..1433132,1433148..1433153,1433181..1433183) /locus_tag="Deba_1280" /note="interdomain interaction site; other site" /db_xref="CDD:173784" misc_feature 1433436..1433588 /locus_tag="Deba_1280" /note="DnaB-helicase binding domain of primase; Region: DnaB_bind; pfam10410" /db_xref="CDD:192576" gene 1434123..1435895 /locus_tag="Deba_1281" /db_xref="GeneID:9493738" CDS 1434123..1435895 /locus_tag="Deba_1281" /note="COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR007127:IPR009042:IPR007627:IPR007624:IPR 007630:IPR000943:IPR011991:IPR014284:IPR012760:IPR013325:I PR013324; KEGG: sfu:Sfum_1212 RpoD family RNA polymerase sigma factor; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; SPTR: A0LHK2 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 factor, region 1.1; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma 70 subunit, RpoD subfamily" /protein_id="YP_003807243.1" /db_xref="GI:302342714" /db_xref="GeneID:9493738" /translation="MLKEEKTLADIQMLISKGRSKGFLTYEEINDALDEEVTSDRMDD MLMVLDEMGIQLVDDEGSLKVKAQDSSFEDEAEDEVVEAAEDEAEIPGDEGRVSDPVK MYLREMGQVSLLTREGEVEIAKRIEKGERQCIDALLECSLCVAEILELGRRLENDELR IRDVVCDIDDEESFVQQETRKAEFLALIEKVRGLDERNTATYERLQHRDPDLDAEKRK RLRDEMTKNRRQIAEELAQVKLDKRQVDQLGEIIRVRLRTIDHCEGVITSAMMETGLP KGDIGKLAKKVRANCACDEDMAKCRCDGQRLLAVDESLRVARGRIREVEMECKMGAPS LRKILDRVGKGQTLAQDAKQELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKA VDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQE FGREPTPEEIAEKMDFPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKVINP ADAVISLNLCEQTRKVLATLTPREEKVLRMRFGIGQKSDHTLEEVGRDFDVTRERIRQ IEAKALRKLRHPSRAKKLKAFIEN" misc_feature 1434123..1435892 /locus_tag="Deba_1281" /note="RNA polymerase sigma factor RpoD; Validated; Region: PRK05658" /db_xref="CDD:180186" misc_feature 1434132..>1434308 /locus_tag="Deba_1281" /note="Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979" /db_xref="CDD:112778" misc_feature 1434414..1434518 /locus_tag="Deba_1281" /note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140" /db_xref="CDD:189414" misc_feature 1435188..1435400 /locus_tag="Deba_1281" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature 1435425..1435658 /locus_tag="Deba_1281" /note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539" /db_xref="CDD:146934" misc_feature 1435677..1435850 /locus_tag="Deba_1281" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature order(1435707..1435709,1435737..1435739,1435767..1435772, 1435800..1435802,1435806..1435811,1435815..1435823, 1435827..1435832,1435836..1435838) /locus_tag="Deba_1281" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene complement(1435909..1436946) /locus_tag="Deba_1282" /db_xref="GeneID:9493739" CDS complement(1435909..1436946) /locus_tag="Deba_1282" /note="COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674:IPR006261:IPR003607; KEGG: ade:Adeh_2590 deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C8R019 Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase" /codon_start=1 /transl_table=11 /product="deoxyguanosinetriphosphate triphosphohydrolase" /protein_id="YP_003807244.1" /db_xref="GI:302342715" /db_xref="GeneID:9493739" /translation="MTLREELERREEAILSPFAARSAASKGRARPEPPCAMRPAFQHD RDRILYSKAFRRLKHKTQVFLAPTGDHYRTRLTHTLEVAQIARTMARALALNEDLTEA VALGHDLGHTPFGHAGEAQLNQLLPGGFRHYEQSLRVVDLLEKDGRGLNLTHEVRMGI LHHSKGKGGFLCCQGDDELTLEARLVRCADVMAYVAHDTDDAIRGGVIDAQELPPAVV RTLGRKLGDQIDTMVRDLVGQTRAAGGANPCMSPAVEEAIWRLREFLYARVYDNMEVH HDFIKASKIIRELWERLSEDDEQYQRHVGALPPADQRARRTADYVAGMSDHYALRIYE KIFLPRPWAVM" misc_feature complement(1436353..1436730) /locus_tag="Deba_1282" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature complement(order(1436377..1436379,1436623..1436628, 1436713..1436715)) /locus_tag="Deba_1282" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature complement(1436623..1436625) /locus_tag="Deba_1282" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene 1436992..1438185 /locus_tag="Deba_1283" /db_xref="GeneID:9493740" CDS 1436992..1438185 /locus_tag="Deba_1283" /note="COGs: COG0795 permease; InterPro IPR005495; KEGG: dal:Dalk_0348 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: B8F925 Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family" /codon_start=1 /transl_table=11 /product="permease YjgP/YjgQ family protein" /protein_id="YP_003807245.1" /db_xref="GI:302342716" /db_xref="GeneID:9493740" /translation="MFRPRIIHRYLLREMIGPFFISLGVFTFMLLIAKIMELTDLVVS RGVGLDVVGRLLLYTLPYFFVFTIPMATLLGVLLAFLRMSGDMEVVALKAAGVSPYAF LPPVAVLAICAWLVTSALAFWGLPWGNHRFENLVFQVAKAQTDLALKERVFMDTFPGM VIYISRLPGQGQMTDLFIVDEREKGRHHTIVAKRGKIFPANNDRLILRLYDGTIHSVG QNLRSAQTAAFVTYDIAVDASTLSAAHQRTTKHEKEMYFGELLAEMDKLPADSMQHYL IEMEMHKKFSVPFACLVMALIGLPLGMHSRGGRSWGVAIALVVFLGYYLMLSAAWSFG KTGDYPPIVGMWAPNLLLGALAVELFRREVKEKPLAILDVLGGLPVIIQRLLGAKLAD RGAER" misc_feature 1437001..1438077 /locus_tag="Deba_1283" /note="Predicted permeases [General function prediction only]; Region: COG0795; cl12074" /db_xref="CDD:189246" misc_feature 1437016..1438077 /locus_tag="Deba_1283" /note="Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739" /db_xref="CDD:190734" gene 1438186..1439265 /locus_tag="Deba_1284" /db_xref="GeneID:9493741" CDS 1438186..1439265 /locus_tag="Deba_1284" /note="COGs: COG0795 permease; InterPro IPR005495; KEGG: sat:SYN_00415 permease; PFAM: permease YjgP/YjgQ family protein; SPTR: Q2LSQ8 Permease; PFAM: Predicted permease YjgP/YjgQ family" /codon_start=1 /transl_table=11 /product="permease YjgP/YjgQ family protein" /protein_id="YP_003807246.1" /db_xref="GI:302342717" /db_xref="GeneID:9493741" /translation="MRILGLYVAGEFLKVFGFLLVAFVSLFTLFDFIEKVDNFHEALV PASTMLMYFLLQVPEIISLLSPLAVLLGTIIALGLMSKRGETIAIKSSGVSVMRFTLP IVLLALTITLSTALINEMALPGTKARTNHIWNVMVEKRPSSAYSHEKFWFKGNGSIYH IGLFDPLGQVLSNVVYYRFDDHFNLAERIDARRATYIGGKWLFFLGLHQQRLPQGGYS AVVFDELEKNLPERPEDFSRLSKPSEEMGLAELSDHVGKVDAEGYDTRRYQVDMHCKI SYPFICVIMALIGIPLALFRERGRALAPGIVVGMLVALVYWISFGYARSIFGYGGVLP PMMAAWLPNAMFALAGVGMITSVRQ" misc_feature 1438186..1439238 /locus_tag="Deba_1284" /note="Predicted permeases [General function prediction only]; Region: COG0795; cl12074" /db_xref="CDD:189246" misc_feature 1438204..1439247 /locus_tag="Deba_1284" /note="Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739" /db_xref="CDD:190734" gene complement(1439352..1440509) /locus_tag="Deba_1285" /db_xref="GeneID:9493742" CDS complement(1439352..1440509) /locus_tag="Deba_1285" /EC_number="1.3.99.2" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR006089:IPR 013786:IPR013764:IPR009100:IPR009075; KEGG: dal:Dalk_3776 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FLV9 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003807247.1" /db_xref="GI:302342718" /db_xref="GeneID:9493742" /translation="MALAFINEEQRMIQTMARDFAREVLLPGAGQRDREGRFPADMLA RMAELGFLGMMVPEEYGGAGVDAVSYVLALAEIAYGCASTAVVMSVHNSICCEAMVKF GSEEQKRQWLPPMCDGRVIGAFGLTEPGAGSDPSGQITTAVRDGDYWVLSGVKQFITT GSNAGLTIVTAYTDKSKKHRGVSAFLVPKGSPGLVVGKAEDKLGLKASDTVQLILEDC RVPAANMLGREGEGFRVAMTCLDAGRIGIAAQSLGVARACLDEAVTFIDSREQFGRAI SQFQGVRWRIADMATEIEAAELLCVNAALLKAQGQRFTAEASMAKLFASEMVNRITSQ CLQLHGGYGFCKEYDIERHFRDARVFTIYEGTSEIQRVVISNHVLGPQRVR" misc_feature complement(1439361..1440494) /locus_tag="Deba_1285" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(1439370..1440488) /locus_tag="Deba_1285" /note="Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases; Region: SCAD_SBCAD; cd01158" /db_xref="CDD:173847" misc_feature complement(order(1439418..1439420,1439487..1439489, 1439499..1439501,1440033..1440035,1440039..1440041, 1440111..1440113,1440129..1440131,1440138..1440140)) /locus_tag="Deba_1285" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:173847" misc_feature complement(order(1439388..1439390,1439397..1439399, 1439406..1439408,1439427..1439429,1439433..1439438, 1439445..1439450,1439457..1439459,1439469..1439474, 1439478..1439480,1439484..1439486,1439499..1439501, 1439511..1439513,1439544..1439546,1439613..1439615, 1439637..1439639,1439646..1439648,1439652..1439657, 1439667..1439669,1439694..1439696,1439703..1439705, 1439898..1439912,1440039..1440041,1440108..1440110, 1440123..1440125)) /locus_tag="Deba_1285" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:173847" misc_feature complement(order(1439418..1439420,1439694..1439696, 1439778..1439780,1439787..1439792,1439799..1439801, 1440108..1440113)) /locus_tag="Deba_1285" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173847" misc_feature complement(1439418..1439420) /locus_tag="Deba_1285" /note="catalytic base [active]" /db_xref="CDD:173847" gene complement(1440581..1441132) /locus_tag="Deba_1286" /db_xref="GeneID:9493743" CDS complement(1440581..1441132) /locus_tag="Deba_1286" /note="InterPro IPR001387:IPR013096:IPR014710:IPR011051; KEGG: dal:Dalk_3777 transcriptional regulator, XRE family; PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: B8FLW0 Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="YP_003807248.1" /db_xref="GI:302342719" /db_xref="GeneID:9493743" /translation="MARTVKRKSLGQRLRRLREERGMSLETLANETGQARDYLEKIEK DEAIPPVAVLLTLGRALEVDSGELLKDDETAEAAERRAQAVRTRTDHYSYRVLTPEAL HKHLKGFRVVIEPASDLDGPGYQHEGEEFVYVLAGEVRITVGNNVNDLKPGDSLHFNS GVIHTLRNTGDQTCELIVVLYTP" misc_feature complement(1440929..1441069) /locus_tag="Deba_1286" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" misc_feature complement(1440596..1440808) /locus_tag="Deba_1286" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene complement(1441158..1442123) /locus_tag="Deba_1287" /db_xref="GeneID:9493744" CDS complement(1441158..1442123) /locus_tag="Deba_1287" /note="COGs: COG1703 Putative periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129:IPR003593; KEGG: ppd:Ppro_0389 LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: ATPase AAA; SPTR: A1AL03 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase" /codon_start=1 /transl_table=11 /product="LAO/AO transport system ATPase" /protein_id="YP_003807249.1" /db_xref="GI:302342720" /db_xref="GeneID:9493744" /translation="MDPRQLAEAILSGQIRPAARLMRLLDDGEPQALEALKLLHGHTG RARVIGVTGSPGVGKSTLTDALIAQFRQRGLGVGVVAVDPTSPFSGGAILGDRVRMQR HATDEGVFIRSLATRGHFGGLTASTQGVVKIMDAMGKDVVIVETVGVGQDEVDVVGLA DTTLVVTVPGLGDDIQAIKAGILETADVFVVNKIDREGARRAIAELQGMLELAGGRED RFGWTVPVVGVCAVDGRGLEEMLAALDEHWAHQNADPRRLASRRRQRTRMELLDLVQT QIMSRLTKVMDQGRGLDDLVERISQGQADPYSACDDIISRFLTES" misc_feature complement(1441173..1442123) /locus_tag="Deba_1287" /note="Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]; Region: ArgK; COG1703" /db_xref="CDD:31889" misc_feature complement(1441539..1441982) /locus_tag="Deba_1287" /note="The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and...; Region: ArgK-like; cd03114" /db_xref="CDD:48378" misc_feature complement(1441941..1441967) /locus_tag="Deba_1287" /note="Walker A; other site" /db_xref="CDD:48378" misc_feature complement(1441383..>1441601) /locus_tag="Deba_1287" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature complement(1441539..1441550) /locus_tag="Deba_1287" /note="G4 box; other site" /db_xref="CDD:133258" misc_feature complement(1441428..1441436) /locus_tag="Deba_1287" /note="G5 box; other site" /db_xref="CDD:133258" gene complement(1442248..1443024) /locus_tag="Deba_1288" /db_xref="GeneID:9493745" CDS complement(1442248..1443024) /locus_tag="Deba_1288" /note="COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: scl:sce0893 hypothetical protein; SPTR: A9ETY3 Putative uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="Zn-dependent hydrolase of the beta-lactamase fold" /protein_id="YP_003807250.1" /db_xref="GI:302342721" /db_xref="GeneID:9493745" /translation="MQLTWWGAAAVCLQCGDDVFWFDPFLARAPRAKPGPRPLPVEQD RATAIFLTHGHFDHALGVAGLANRWRAPVFCHAVAGRTLMRDGLDPALLRPIDHDGWR ESIGPLSVLSHHSGHVRFDAALVLRTLPRILPGLTALGRLMAAYPQGQALCYRLDVEG KSVVLFGSAGAGPGLLAELARQPVDLLLMPLQGHSRICQIGLEYVAALRPRAVMAIHH DDFHPPMSMAVDIGPFVAGLRRGFPHVRPIEAQVGQAVAP" misc_feature complement(<1442800..1443024) /locus_tag="Deba_1288" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" misc_feature complement(<1442623..1442904) /locus_tag="Deba_1288" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(1443098..1444756) /locus_tag="Deba_1289" /db_xref="GeneID:9493746" CDS complement(1443098..1444756) /locus_tag="Deba_1289" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: dol:Dole_2557 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZWN0 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003807251.1" /db_xref="GI:302342722" /db_xref="GeneID:9493746" /translation="MELVKGFAATSQDDYQLNIINIFRHGARNSARQEIASQTPAGML RQSYAQSFERVNRLANALKSLGVQPGDRVGVMDWNSYRHFECYFALPGMGAVLLLLNL RLATPDLAYVINHAKAKVIIVDQTLAPFIEAAAPLLETVEGYVIIGDGEFSAVRTKLA PAHGYEELLAAAAPEYDWPHLDERSAAAACYTTGTTGRPKGVFYSHRCVYLHTMAVAM NSQASDQDCFLQLVPMFHALGWGGVYYAVMVGAKIVFPGMYNLERLDLLAKLMIDEGV TMGAGAPALLMPMLEYIRGLEQKPDLGRTRFFCGASEPPLAMMKGFHDLCGLDIMHAY GATETTPLASANRLKPWLADALSDDEKWDLRRKQGLVINGLDVKLLGMNGEPLPFDGK SAGEICLRGPWITGRYHDAPGSEAQFTPDGYWRSGDVGTIDQEGYLKVTDRLKDVIKT GGEWISSVDMENAIMSFAPALEAAVVGVKHPKWEERPLALVILRPEFKGQVSADDVRA HLSKSFAKWQLPDQVLFVDQIPKTSVGKISKKDLRQAYQDIYMK" misc_feature complement(1443113..1444717) /locus_tag="Deba_1289" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature complement(1443113..1444717) /locus_tag="Deba_1289" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" gene complement(1444919..1448929) /locus_tag="Deba_1290" /db_xref="GeneID:9493747" CDS complement(1444919..1448929) /locus_tag="Deba_1290" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; SPTR: B8DK88 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003807252.1" /db_xref="GI:302342723" /db_xref="GeneID:9493747" /translation="MPQTKVMIVEDQAHDPSLLARRLEALGYQGCCLATSGQMALGLL GQFDVDLALVDAALPGPLDGVETARLLREAHALPVVFMAWPDDRGLLERAKHAGPFGY LLRPFSDGELRVALEMGLHQAQAESRLRESERRFRYVVEGVADGIWALDEFGFTSFGN ARLRQILGRGQQELTQKSAFELFEPATAGVLRQNLARCRSGQGEPFELSFTTPQGRLV QALFSPRPMLDRLGAPRGVILAITDVSALKRAQRGLEWQSRVDQALARIADVLLHSEV TFERITKVILDNARELTQSKLGYVGSIDPRTRELVNHTISEVMGDQCQASSRSGRVAF SPRPDGSYPGLWGHCLNTKEAFFTERPADHPAAQGLPPGHLPLTRFLSAPAIIDDHLV GQIALANAGRPYHDDDLKAVTRIADLYALAIQRQEAMTALRDSERKYRLLADNSSDTI WTADLGLRIDYISPAVHDLLGYTPEEVLKLSVTDLISARSLIKIQQLLRDELAREASQ PGSSPSHALELEHTRKDGQIIVVEVSARFLRGPDGRPVGLLGSSRDVTQRRKAQDDLA ESESRYRDLFDSIEDFVYSHDEDGVLISANKALAAAVGRPRQRIIGHSIAEFTAERLR QNFHDIYLRQLRETGQHEGLFVLTSQDGQARHVEYYTSMGRDRSGGIIYRGSAHDVTE RRHLTRQLQRAKEEAEAASRAKSDFLANMSHEIRTPMNAIIGMTNLTLMTSLTREQTE FLGTVKSAAESLMQLLGDILDLSKIEARQLALENVEFDLADLLEATLRDLAVRAHGKG LELIGRMAPGAPGRLRGDPLRLRQILVNLVGNAIKFTDHGQVLVEARLEAMADNKLEM RFSVVDTGVGIEPENIGRVFDRFTQADSSSTRRFGGTGLGAAISKELCELMGGRIWVE STPGRGSAFHFTIAAGHSSQDQPEPSGLDGLSLMVVVANKDARQALVESLHAQGALVL TADGGSTAMELISRTHAAGGRFDAALIDIALPGMGGMALLRSLRRLPHAADLPVALLS APGRPDGAAPALTPPRCQVVAKPVARAELRKALLALINGEEAPAAAPRPDDPEPPRKS LRVLLAEDNALNQKLAEAILVKRGHLVSLADNGVKAVAAFEATEFDLIIMDVQMPEMD GLAATRAIRAIENERALGRTPIMAMTAHAMESDRQACLEAGMDTYVAKPIQPDEFLAA VEGLAGRQPPPPAQSAPPPADQVLDREELLARVSGDEALVRQLAAIFLEDLDERATAI KRALAAGDAPALAIAAHTLKGEAGNIAAHGVHQAALALERAARQGDMALAAQLATPLL GQMEDLKTAVAKLRDQ" misc_feature complement(1448579..1448914) /locus_tag="Deba_1290" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1448579..1448911) /locus_tag="Deba_1290" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1448612..1448617,1448624..1448626, 1448681..1448683,1448738..1448740,1448765..1448767, 1448897..1448902)) /locus_tag="Deba_1290" /note="active site" /db_xref="CDD:29071" misc_feature complement(1448765..1448767) /locus_tag="Deba_1290" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1448738..1448746,1448753..1448758)) /locus_tag="Deba_1290" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1448609..1448617) /locus_tag="Deba_1290" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1448198..1448515) /locus_tag="Deba_1290" /note="PAS fold; Region: PAS; pfam00989" /db_xref="CDD:144544" misc_feature complement(1448198..1448500) /locus_tag="Deba_1290" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(1448285..1448287,1448300..1448302, 1448375..1448386,1448423..1448425,1448441..1448443, 1448453..1448455)) /locus_tag="Deba_1290" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(1448258..1448260,1448264..1448266, 1448345..1448350,1448357..1448359,1448381..1448383, 1448393..1448395)) /locus_tag="Deba_1290" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(1447622..1448155) /locus_tag="Deba_1290" /note="FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203" /db_xref="CDD:32385" misc_feature complement(1447631..1448095) /locus_tag="Deba_1290" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature complement(1447235..1447627) /locus_tag="Deba_1290" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(1447265..1447594) /locus_tag="Deba_1290" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(1447352..1447354,1447367..1447369, 1447466..1447477,1447514..1447516,1447532..1447534, 1447544..1447546)) /locus_tag="Deba_1290" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(1447325..1447327,1447331..1447333, 1447436..1447441,1447448..1447450,1447472..1447474, 1447484..1447486)) /locus_tag="Deba_1290" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(1446860..1447228) /locus_tag="Deba_1290" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(1447022..1447222) /locus_tag="Deba_1290" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(1446638..1446814) /locus_tag="Deba_1290" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(1446653..1446655,1446665..1446667, 1446674..1446676,1446686..1446688,1446695..1446697, 1446707..1446709,1446755..1446757,1446764..1446766, 1446776..1446778,1446785..1446787,1446797..1446799, 1446809..1446811)) /locus_tag="Deba_1290" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(1446791..1446793) /locus_tag="Deba_1290" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(1446149..1446466) /locus_tag="Deba_1290" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1446161..1446163,1446167..1446172, 1446185..1446187,1446191..1446193,1446239..1446250, 1446329..1446334,1446338..1446340,1446344..1446346, 1446350..1446352,1446431..1446433,1446440..1446442, 1446452..1446454)) /locus_tag="Deba_1290" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1446440..1446442) /locus_tag="Deba_1290" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1446242..1446244,1446248..1446250, 1446332..1446334,1446338..1446340)) /locus_tag="Deba_1290" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(<1445804..1446088) /locus_tag="Deba_1290" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1445840..1445842,1445906..1445908, 1445930..1445932,1446074..1446079)) /locus_tag="Deba_1290" /note="active site" /db_xref="CDD:29071" misc_feature complement(1445930..1445932) /locus_tag="Deba_1290" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1445906..1445914,1445918..1445923)) /locus_tag="Deba_1290" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1445312..1445659) /locus_tag="Deba_1290" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1445303..1445656) /locus_tag="Deba_1290" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1445345..1445350,1445357..1445359, 1445414..1445416,1445489..1445491,1445513..1445515, 1445642..1445647)) /locus_tag="Deba_1290" /note="active site" /db_xref="CDD:29071" misc_feature complement(1445513..1445515) /locus_tag="Deba_1290" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1445489..1445497,1445501..1445506)) /locus_tag="Deba_1290" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1445342..1445350) /locus_tag="Deba_1290" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(1449069..1450217) /locus_tag="Deba_1291" /db_xref="GeneID:9493748" CDS complement(1449069..1450217) /locus_tag="Deba_1291" /EC_number="1.3.99.2" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR006089:IPR 013786:IPR013764:IPR009100:IPR009075; KEGG: hoh:Hoch_3778 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: D0LYC8 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003807253.1" /db_xref="GI:302342724" /db_xref="GeneID:9493748" /translation="MNFALTEEQLMVKETAARFADDELKPKAAHYDKTHEHPAEFVEA LGELGFMGIAIPEEYGGAGMDYVSYVLALSEISRGDASVGVIMSVCNSLYGFPLNSFG TDEQKKAFLTPVASGKKLGCYGLTEAGAGSDPAAMRTTAVLDGNEWVLNGEKKFITNG NVASYAVVAAITDKAAGAKGISSFVVDLENTKGFSVGFIEEKMGICASGTSELVFEDA RIPKENLLGQLGGGLKQMLMTLNSGRIGIGSQALGIGRAVLEEAVAYAKEREQFGKPI AAMQAIQWKLADIATHLDAAELLLLRAAWLEDQHANFEMQAAMGKMYASDAAMAAAIE GVQVLGGYGYCKEYAMERHMRDAKITQIYEGTNEIMRLVIARNLLKQR" misc_feature complement(1449075..1450217) /locus_tag="Deba_1291" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(1449078..1450199) /locus_tag="Deba_1291" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(1449114..1449116,1449120..1449122, 1449126..1449134,1449744..1449746,1449750..1449752, 1449843..1449845,1449849..1449851,1449939..1449941)) /locus_tag="Deba_1291" /note="active site" /db_xref="CDD:173838" gene complement(1450270..1451058) /locus_tag="Deba_1292" /db_xref="GeneID:9493749" CDS complement(1450270..1451058) /locus_tag="Deba_1292" /EC_number="4.2.1.55" /note="COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: chy:CHY_1601 3-hydroxybutyryl-CoA dehydratase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: C0GKR8 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_003807254.1" /db_xref="GI:302342725" /db_xref="GeneID:9493749" /translation="MAYEVIIFETEGPLAVVTVNRPKALNALSPQVMDELTDAFDKIS TDENIRAAVITGAGRAFVAGADISAMQTYTPLQARGFAKKGHKLGEKIENCPKPVIAA VNGFCLGGGCELAMCCDFIYASEGAKFGQPEINLGIVPGFGGTQRLPRLVGKGWAKLL CMTGEMIGAQEAAAIGLVTRVFPEGEVLEAAKKTALLMCGKGMVSLRAAKQLVEQGFD LPLQRALDLEAEVFCTCFTSPDQREGMSAFLEKRKADFKGGLDK" misc_feature complement(1450285..1451058) /locus_tag="Deba_1292" /note="3-hydroxybutyryl-CoA dehydratase; Validated; Region: PRK05809" /db_xref="CDD:180270" misc_feature complement(1450465..1451043) /locus_tag="Deba_1292" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(1450651..1450653,1450660..1450665, 1450729..1450737,1450741..1450743,1450858..1450872, 1450882..1450884,1450978..1450980,1450984..1450986)) /locus_tag="Deba_1292" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(1450729..1450731,1450864..1450866)) /locus_tag="Deba_1292" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(1450465..1450470,1450477..1450479, 1450522..1450524,1450531..1450533,1450564..1450566, 1450573..1450578,1450582..1450587,1450591..1450596, 1450609..1450614,1450618..1450626,1450630..1450632, 1450648..1450659,1450693..1450704,1450765..1450767, 1450789..1450791)) /locus_tag="Deba_1292" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(1451361..1452539) /locus_tag="Deba_1293" /db_xref="GeneID:9493750" CDS complement(1451361..1452539) /locus_tag="Deba_1293" /EC_number="2.3.1.9" /note="COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155:IPR016038:IPR016039; KEGG: cbe:Cbei_0411 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: A8U754 Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_003807255.1" /db_xref="GI:302342726" /db_xref="GeneID:9493750" /translation="MKEVVIAGAARTAVGRFGGMYSDISAVQLGVTAAKEALARAGVG VAMVDELIFGNVLGAGLGQNVARQVQIGAGVPVDKNAFTVNKVCASGLKSVMLAAQAV MCDDAEIVVAGGTENMSQAPYLMPKGRFGYRMGNGSLIDSMINDGLWDIFNGYHMGIT AENVAEKYGLTRQAQDQLACASQNRAQAAITAGRFKDEIVPVMAPQRKGEPKALDTDE FPRFDTTIDDLAKLKPAFKKDGTVTAGNASGINDGAAAVVVTSREKANALGLPILAKI KSYGWGGVDPSVMGLGPIEASKSALTKAGLTVEDLDLIEANEAFAAQALAVIGELKFN TDIVNVNGGAIALGHPIGASGARILVSLIYEMLRRDAKLGLATLCIGGGQGAAMILER " misc_feature complement(1451364..1452539) /locus_tag="Deba_1293" /note="putative acyltransferase; Provisional; Region: PRK05790" /db_xref="CDD:180261" misc_feature complement(1451364..1452527) /locus_tag="Deba_1293" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature complement(order(1451391..1451396,1451631..1451633, 1451691..1451693,1451697..1451699,1451703..1451705, 1452183..1452185,1452228..1452230,1452237..1452242, 1452261..1452263,1452285..1452296,1452327..1452329, 1452339..1452341,1452348..1452350,1452390..1452392, 1452471..1452473)) /locus_tag="Deba_1293" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature complement(order(1451403..1451405,1451493..1451495, 1452276..1452278)) /locus_tag="Deba_1293" /note="active site" /db_xref="CDD:29411" gene complement(1452586..1453764) /locus_tag="Deba_1294" /db_xref="GeneID:9493751" CDS complement(1452586..1453764) /locus_tag="Deba_1294" /EC_number="2.3.1.9" /note="COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155:IPR016038:IPR016039; KEGG: dol:Dole_2187 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: A8ZUF9 Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_003807256.1" /db_xref="GI:302342727" /db_xref="GeneID:9493751" /translation="MREVVITSACRTPVGAFRGAFASLSALDLGVVVLNEAIARAGLA KDQVDEVIMGCVLPAGLGQNPARQACLRAGLPVEVGCITVNKVCGSGLKAVMLAAQAI ACGDAEVIVAGGMESMTNAPYLVPQARGGMRMGNGKLVDSMVHDGLWDHLNDFHMGMS AELCAEKYGVSRQDQDQFAVESYAKSFEADAQGRFKAQIAPVSVAGRKGPTVVEHDEG LKLSSPEALAALRPAFKKDGGTVTAGNASTLNDGAAAVVLMSAEKAAALGARPLVRVG AQAAAGIDPKYVLVAPMLSIPKACAKAGIDPKDIDLHELNEAFASSSLAVQRTLGLDP ARINIYGGGISIGHPIGASGARVLTTLIYAMKDQDAATGMASLCLGGGEAVSLLVENI " misc_feature complement(1452589..1453764) /locus_tag="Deba_1294" /note="putative acyltransferase; Provisional; Region: PRK05790" /db_xref="CDD:180261" misc_feature complement(1452592..1453752) /locus_tag="Deba_1294" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature complement(order(1452619..1452624,1452859..1452861, 1452919..1452921,1452925..1452927,1452931..1452933, 1453408..1453410,1453453..1453455,1453462..1453467, 1453486..1453488,1453510..1453521,1453552..1453554, 1453564..1453566,1453573..1453575,1453615..1453617, 1453696..1453698)) /locus_tag="Deba_1294" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature complement(order(1452631..1452633,1452721..1452723, 1453501..1453503)) /locus_tag="Deba_1294" /note="active site" /db_xref="CDD:29411" gene complement(1453824..1454456) /locus_tag="Deba_1295" /db_xref="GeneID:9493752" CDS complement(1453824..1454456) /locus_tag="Deba_1295" /note="COGs: COG2378 transcriptional regulator protein; KEGG: sat:SYN_02988 transcriptional regulator; SPTR: Q2LX17 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_003807257.1" /db_xref="GI:302342728" /db_xref="GeneID:9493752" /translation="MNSRRLARLMGIICDIKANPRRSPDEMCRRFSVSRRQFYKDRDT LARMGFGFHYARGKQGFLLDKELTFNVSGLSLADLFALILAVRELTGLSDFGLAMGAL AGLRRLVEQLPAGPRELFQDAVDEVVVADGFGCPPEVLRELEPAINEGRRVVLVVERD GQAQRLSVDPRLLTLKDGRLSLEADGLEGGRIALAEVRKVIATPFFSPRQ" misc_feature complement(<1453875..1454456) /locus_tag="Deba_1295" /note="Predicted transcriptional regulator [Transcription]; Region: COG2378" /db_xref="CDD:32525" gene 1454763..1455491 /locus_tag="Deba_1296" /db_xref="GeneID:9493753" CDS 1454763..1455491 /locus_tag="Deba_1296" /note="COGs: COG2122 conserved hypothetical protein; InterPro IPR003374:IPR007183; KEGG: sfu:Sfum_2124 hypothetical protein; PFAM: ApbE family lipoprotein; SPTR: A0LK55 Putative uncharacterized protein; PFAM: ApbE family" /codon_start=1 /transl_table=11 /product="ApbE family lipoprotein" /protein_id="YP_003807258.1" /db_xref="GI:302342729" /db_xref="GeneID:9493753" /translation="MTAYQERSYRISCRAGGLAAFTARVKETDLWIMAERDLRAQAVE IIMALRLGLEAYIRARPEFVDALTPLADDDLAPPLVRRMLTAGRAAGVGPMAAVAGAM AQATATALQEHSQAVAVENGGDVYLDAGRDLTIGLFAGASPLSGRLGLRVAATAQPLA VSTSSGTVGHSLSLGRADAATIIAADAALADAAATALGNRVRAAADLRPALEWAAGVH GVLGALAIIGGDIAAWGQVELVEL" misc_feature 1454802..1455398 /locus_tag="Deba_1296" /note="ApbE family; Region: ApbE; cl00643" /db_xref="CDD:193897" gene 1455499..1455978 /locus_tag="Deba_1297" /db_xref="GeneID:9493754" CDS 1455499..1455978 /locus_tag="Deba_1297" /note="COGs: COG0622 phosphoesterase; InterPro IPR004843:IPR000979; KEGG: dal:Dalk_0913 phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; SPTR: Q2YZQ0 Putative uncharacterized protein; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family" /codon_start=1 /transl_table=11 /product="phosphodiesterase, MJ0936 family" /protein_id="YP_003807259.1" /db_xref="GI:302342730" /db_xref="GeneID:9493754" /translation="MKRIGVISDTHMRGYDPAFAALLARVFAGVDMILHAGDITSLAV LDALDAPQVLAVAGNMDQGPTSANLPSRRIITVEGLRIGLTHGWGPREGLARRVAESF AADDVRCVVFGHSHQPANCVVGGVLLFNPGSAMAGQAGGTVGVLEVDRQITGSIINL" misc_feature 1455505..1455969 /locus_tag="Deba_1297" /note="Escherichia coli YfcE and related proteins, metallophosphatase domain; Region: MPP_YfcE; cd00841" /db_xref="CDD:163617" misc_feature 1455505..1455852 /locus_tag="Deba_1297" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature order(1455523..1455525,1455529..1455531,1455610..1455612, 1455673..1455678,1455754..1455756,1455838..1455840, 1455844..1455846) /locus_tag="Deba_1297" /note="active site" /db_xref="CDD:163617" misc_feature order(1455523..1455525,1455529..1455531,1455610..1455612, 1455673..1455675,1455754..1455756,1455838..1455840, 1455844..1455846) /locus_tag="Deba_1297" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163617" misc_feature order(1455589..1455594,1455658..1455660,1455667..1455681, 1455706..1455741,1455760..1455762) /locus_tag="Deba_1297" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:163617" gene 1455991..1456476 /locus_tag="Deba_1298" /db_xref="GeneID:9493755" CDS 1455991..1456476 /locus_tag="Deba_1298" /note="COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310:IPR011151:IPR011146; KEGG: sfu:Sfum_2126 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: A0LK57 Histidine triad (HIT) protein; PFAM: HIT domain" /codon_start=1 /transl_table=11 /product="histidine triad (HIT) protein" /protein_id="YP_003807260.1" /db_xref="GI:302342731" /db_xref="GeneID:9493755" /translation="MEVLWAPWRMSYILGNDKADGCIFCLATDGVGADNLVLGVGRST LAMMNKYPYNNGHLLIAPKRHVAAIDELTEEESADLMANLALAKKALQTLMNPEGYNV GLNLGRVAGAGIEEHLHFHIVPRWGGDTNFMTVLGDVRSVPEHIEATCEKLRPFFKNI R" misc_feature 1456054..1456431 /locus_tag="Deba_1298" /note="FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into...; Region: FHIT; cd01275" /db_xref="CDD:29588" misc_feature order(1456129..1456131,1456135..1456140,1456159..1456161, 1456165..1456167,1456303..1456305,1456327..1456329, 1456333..1456335,1456345..1456347,1456351..1456353) /locus_tag="Deba_1298" /note="nucleotide binding site/active site [active]" /db_xref="CDD:29588" misc_feature order(1456339..1456341,1456345..1456347,1456351..1456359) /locus_tag="Deba_1298" /note="HIT family signature motif; other site" /db_xref="CDD:29588" misc_feature 1456345..1456347 /locus_tag="Deba_1298" /note="catalytic residue [active]" /db_xref="CDD:29588" gene 1456483..1456884 /locus_tag="Deba_1299" /db_xref="GeneID:9493756" CDS 1456483..1456884 /locus_tag="Deba_1299" /note="KEGG: drt:Dret_1341 hypothetical protein; SPTR: C8X2I2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1049)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807261.1" /db_xref="GI:302342732" /db_xref="GeneID:9493756" /translation="MMNYVKVILVSAAVALAVIFMIQNIEPLSAPLSIRLNLFFFNFE STPYPTYLVIMLAFFIGLLGASLVGIVERMRLRREIKLKQKEIDRQSAEVNSLRNLPL TDEKLTQNGPEHGAPAPAEPQPPAEPEHKVE" misc_feature 1456582..1456776 /locus_tag="Deba_1299" /note="Protein of unknown function (DUF1049); Region: DUF1049; cl01539" /db_xref="CDD:194160" gene 1456888..1458105 /locus_tag="Deba_1300" /db_xref="GeneID:9493757" CDS 1456888..1458105 /locus_tag="Deba_1300" /note="COGs: COG2956 N-acetylglucosaminyl transferase; InterPro IPR001440:IPR019734:IPR013026:IPR011990; KEGG: mgm:Mmc1_0158 tetratricopeptide repeat protein; PFAM: hypothetical protein; SPTR: A0L3Z2 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807262.1" /db_xref="GI:302342733" /db_xref="GeneID:9493757" /translation="MDQTLMVVAGQAISLGMAAAAVAAVLIGLALGWLLGRGRKPLAP VAAGKGLKASRAASDDAFLRGLSHMMADHTDQAIEEFTKAVNLNTDTVETYVVLGNLF RQKGQIERAVRIRQTIIARANLDPAVQLQARFDLGLDYRKGGLFNRAVEAFQEVLSRD PGHQDALRQLVGLYEEMRDWASAYETMRRLSKLTGEDNRLVLAHHKTELGKDLQAAGK LDAAEQAMSQAISVHKKCLDAYLHLGDLELARGRNRKAINLWRKAVQMAPVYAHLVIS RLDMAEETLGRKVVADFLAGVDLDQAEPATLLALAKSRQRHGEHKQALQLLEAAIVKE PGCLEAHQLRGDILLAAGDNDACLKAYVELLAQVQGYGAQYQCGQCGFVSHQLAWKCP RCHGWDTMTPRHS" misc_feature 1457011..1458099 /locus_tag="Deba_1300" /note="tetratricopeptide repeat protein; Provisional; Region: PRK11788" /db_xref="CDD:183314" misc_feature 1457071..1457370 /locus_tag="Deba_1300" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1457071..1457076,1457083..1457088,1457173..1457178, 1457182..1457187,1457194..1457199,1457287..1457292, 1457299..1457304,1457311..1457316) /locus_tag="Deba_1300" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1457080..1457082,1457116..1457118,1457128..1457130, 1457137..1457139,1457182..1457184,1457218..1457220, 1457230..1457232,1457239..1457241,1457296..1457298, 1457332..1457334,1457344..1457346,1457353..1457355) /locus_tag="Deba_1300" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 1457278..1457592 /locus_tag="Deba_1300" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1457278..1457283,1457287..1457292,1457299..1457304, 1457389..1457394,1457398..1457403,1457410..1457415, 1457491..1457496,1457518..1457523,1457530..1457535) /locus_tag="Deba_1300" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1457296..1457298,1457332..1457334,1457344..1457346, 1457353..1457355,1457398..1457400,1457434..1457436, 1457446..1457448,1457455..1457457,1457515..1457517, 1457551..1457553,1457563..1457565,1457572..1457574) /locus_tag="Deba_1300" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 1457509..1457787 /locus_tag="Deba_1300" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1457509..1457511,1457518..1457523,1457608..1457613, 1457617..1457622,1457629..1457634,1457713..1457718, 1457725..1457730,1457737..1457742) /locus_tag="Deba_1300" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1457515..1457517,1457551..1457553,1457563..1457565, 1457572..1457574,1457617..1457619,1457653..1457655, 1457665..1457667,1457674..1457676,1457722..1457724, 1457752..1457754,1457764..1457766,1457773..1457775) /locus_tag="Deba_1300" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 1457749..1457982 /locus_tag="Deba_1300" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1457752..1457754,1457764..1457766,1457773..1457775, 1457818..1457820,1457854..1457856,1457866..1457868, 1457875..1457877,1457920..1457922,1457956..1457958, 1457968..1457970,1457977..1457979) /locus_tag="Deba_1300" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(1457809..1457814,1457818..1457823,1457830..1457835, 1457911..1457916,1457923..1457928,1457935..1457940) /locus_tag="Deba_1300" /note="binding surface" /db_xref="CDD:29151" gene 1458199..1460775 /locus_tag="Deba_1301" /db_xref="GeneID:9493758" CDS 1458199..1460775 /locus_tag="Deba_1301" /note="COGs: COG0249 Mismatch repair ATPase (MutS family); InterProIPR007695:IPR007860:IPR007696:IPR007861:IPR 000432:IPR016151:IPR005748; KEGG: gem:GM21_2495 DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SPTR: C6MKK7 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; manually curated; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein MutS" /protein_id="YP_003807263.1" /db_xref="GI:302342734" /db_xref="GeneID:9493758" /translation="MVRDTPMLRQYLEMKEQAPDCVLFFRMGDFYEVFFEDAVLCSKL LSIQLTSRDKNHPDPIPMAGVPHRAVESYIAQMIEHGYKVAVCDQIEDPRAAKGLVKR AITRIETPAMFTSPDYLPAKDNRYLAALCLVGGVAGLAHLDLASGEFRAASVEPGPPL IDELARLEPAELVLAESQQDHPALAGLAQAGVEAARSNFAGRPPTPAQARQILGERFP GGAEAADNPALAAAAMAWQTLVATRRCQPEHIEPLGLYEVGGHMVLDATARRNLELYK SIAGGGRKGSLLQAVDRTLSPMGGRLLKQWLGFPLLELERVEARHQAVDELTRDLAAR DGLRQALEAMPDVPRLVGRASLGQAGPRELAGLRQALRALPEVRRRLAGFAAPLLRRA AESLEGLEPLAVELERALAESPSQALGDGGVIAEGFDQELDQLRQLGGQGKDWIAALQ ASLRAETGIGSLKIGFNRVFGYYIEVTTAHQAKVPEHFIRKQTLATAERYFTPELKEK EAAVLGAEEKALELERRLFDELRALVAAWSGRLMDCGRALAMVDVLAAWADLAVSQDY ARPLMSQNGALCIEQGRHPVVEQMLAAGEFVPNDVLLDDGAQQVIIITGPNMAGKSTI LRQVALICLLAQAGSFVPAARAELPLVDRVFTRVGAMDDLARGRSTFMVEMTETAQIL KNATPRSLVVLDEVGRGTSTFDGLSLAWAVAEALHDLQGRGVKTLFATHYHELTELAD KLPRVRNYNVAVREHRGEVVFLRRLAPGGVSRSYGLQVARLAGLPEDVLRRAREVLAR LEGEQVRATAPPAKAQGAAQLPLFVAAEHPALTRLRGLDPERMTPLEALAALDELRRL VD" misc_feature 1458199..1460727 /locus_tag="Deba_1301" /note="DNA mismatch repair protein MutS; Provisional; Region: PRK05399" /db_xref="CDD:180056" misc_feature 1458211..1458549 /locus_tag="Deba_1301" /note="MutS domain I; Region: MutS_I; pfam01624" /db_xref="CDD:144998" misc_feature 1458574..>1458729 /locus_tag="Deba_1301" /note="MutS domain II; Region: MutS_II; pfam05188" /db_xref="CDD:147397" misc_feature 1459477..1459707 /locus_tag="Deba_1301" /note="MutS family domain IV; Region: MutS_IV; pfam05190" /db_xref="CDD:147399" misc_feature 1459930..1460559 /locus_tag="Deba_1301" /note="MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal...; Region: ABC_MutS1; cd03284" /db_xref="CDD:73043" misc_feature 1460041..1460064 /locus_tag="Deba_1301" /note="Walker A/P-loop; other site" /db_xref="CDD:73043" misc_feature order(1460050..1460055,1460059..1460067,1460173..1460175, 1460278..1460283,1460389..1460391) /locus_tag="Deba_1301" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73043" misc_feature 1460164..1460175 /locus_tag="Deba_1301" /note="Q-loop/lid; other site" /db_xref="CDD:73043" misc_feature 1460188..1460229 /locus_tag="Deba_1301" /note="ABC transporter signature motif; other site" /db_xref="CDD:73043" misc_feature 1460266..1460283 /locus_tag="Deba_1301" /note="Walker B; other site" /db_xref="CDD:73043" misc_feature 1460290..1460301 /locus_tag="Deba_1301" /note="D-loop; other site" /db_xref="CDD:73043" misc_feature 1460377..1460397 /locus_tag="Deba_1301" /note="H-loop/switch region; other site" /db_xref="CDD:73043" gene 1460768..1462522 /locus_tag="Deba_1302" /db_xref="GeneID:9493759" CDS 1460768..1462522 /locus_tag="Deba_1302" /note="COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: drt:Dret_0142 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: C8WZG9 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes" /codon_start=1 /transl_table=11 /product="cell wall hydrolase/autolysin" /protein_id="YP_003807264.1" /db_xref="GI:302342735" /db_xref="GeneID:9493759" /translation="MTNRRHTYGLGVCLTALALLALLGAASIAAADESAAYKRAKADY FWLMKHDDAKGVYHNWVSLAERFSRIYTADPSGPLAPGCLLWTGRIFAGAYEQFKQKK DLDKASDALRRLINHFPDSNLADDAQLMIAELHIKHGDVKTAYLELLRVVVNYPNSDM APEAKKRLDELERTLAPRYLAGEEPAPKGVARPTQEPTPPAGPDLSLAQVVELRHWST PSYTRVVLNLDRSAPYTAKVHKAGRAADGSRQLRMDLSGVRLSGGIKVGAPQAGGLLE EVRARQLDAETVRVSLDVKELGSYKVFTLDNPFRVVIDCFADKGPSSVAKSSAKPSVK GKKRVPRGKARQEPSDLSLVKALGLGVRTVVIDPGHGGKDPGCVAGGLREKDITLDLA KRVAKRLRDQLGCRVLLTRDRDRTLSLEERTAIANTNDADLFVSIHVNAAPSQKLSGL ETYFLNLASDEQSMMVAARENATTTRTIGDLQVILNDLMLNSKINESNRMARELHAGL VRRIRAKRGEVRDLGVKQAPFYVLIGAQMPSVLVEVGFITNPTERKLLATSAYRQHLA DGVADGVVAYARGLKSGN" misc_feature <1460990..1461271 /locus_tag="Deba_1302" /note="tol-pal system protein YbgF; Region: tol_pal_ybgF; TIGR02795" /db_xref="CDD:188247" misc_feature 1461374..1461709 /locus_tag="Deba_1302" /note="Localisation of periplasmic protein complexes; Region: AMIN; pfam11741" /db_xref="CDD:152177" misc_feature 1461854..1462462 /locus_tag="Deba_1302" /note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696" /db_xref="CDD:119407" misc_feature order(1461875..1461877,1461917..1461919,1462079..1462081, 1462394..1462396) /locus_tag="Deba_1302" /note="active site" /db_xref="CDD:119407" misc_feature order(1461875..1461877,1461917..1461919,1462079..1462081) /locus_tag="Deba_1302" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:119407" gene 1462651..1463832 /locus_tag="Deba_1303" /db_xref="GeneID:9493760" CDS 1462651..1463832 /locus_tag="Deba_1303" /note="COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dvl:Dvul_0562 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: Q727W0 High-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein; PFAM: Receptor family ligand binding region" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_003807265.1" /db_xref="GI:302342736" /db_xref="GeneID:9493760" /translation="MFKRGVLLLLTLAGCLGLLLAAGCSQEPETIKIGFNVELTGDIP KVGESAKFTAEMIREEINAQGGLEVGGKKYPLEFIYLDNESKPESAVNATLKLVEQDG VMAMIGPNSSKCAVPAGGVCNERQTPMISPWSTNVDTTKGRPWVFRAAFLDSFQAPVA ANFAAKQFNAKTTAVLFDISNDFSKAMADTFKQVWEAKMGPGTVLAFESHGAKEQDFS AQLTKIIAAKPDFFFLPDLYNHVALVVKQARHLGYAGPFMGPDSWASAELMALCGKDC VGQFFSTHYAAAGAQGATKDFIDRYKAKYGYVPDDVAALNWDATHIMLQAIQNVGKID PDLSAQRKAVRDALANIKQFDGITGKMRFDAEGDPIKCAVVVRIAEDGQFIFTESVCP E" misc_feature 1462735..1463820 /locus_tag="Deba_1303" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1462744..1463781 /locus_tag="Deba_1303" /note="Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_ligand_binding_like_12; cd06347" /db_xref="CDD:107342" misc_feature order(1462978..1462986,1463047..1463055,1463197..1463199, 1463359..1463361,1463431..1463433) /locus_tag="Deba_1303" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107342" gene 1463977..1464885 /locus_tag="Deba_1304" /db_xref="GeneID:9493761" CDS 1463977..1464885 /locus_tag="Deba_1304" /note="COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dsa:Desal_2944 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C6C0P9 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_003807266.1" /db_xref="GI:302342737" /db_xref="GeneID:9493761" /translation="MEYFFQNVLNALQWGSFYALIALGYTLVYGVLSLINFAHGDIFM VGAYVAYFAATMFLGEVGLGPGVTLALIVPLTMLATACVGVALERIAYRPLRRKGAHR LYVVITALMCGLILENGNLALLGASRKSFPELVPTTVYAFAGLSVTNLKLAVIATAVA AFAVLHFIVTKTKIGLAMRGIAWDSFAIPLMGVPPDRIIVFTFILGSGMAGLAGVMFA MAYPVLEPYMGALIGWKAFIAAVIGGIGDIRGAFLGGFLLAFLEIGVAAVFPSTMRDL IAFSVLLVFMWQRPTGVFGVARNQKI" misc_feature 1464007..1464858 /locus_tag="Deba_1304" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 1464532..1464588 /locus_tag="Deba_1304" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 1464885..1465925 /locus_tag="Deba_1305" /db_xref="GeneID:9493762" CDS 1464885..1465925 /locus_tag="Deba_1305" /note="COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dvm:DvMF_1164 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: B8DKF6 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_003807267.1" /db_xref="GI:302342738" /db_xref="GeneID:9493762" /translation="MDQTDEQRPMQKYSLNMAMAAALVGVVALAQVGAIDLYVQSVLM FMAINVIMASSLNLVNGFMGEFSCGHGGFMCVGAYVGSVLSMMLFTDSHLYGAALLPP QWAVALFPLVLLGGGAAAALAGVIVAVPSFKTRGDYLAIITLAVNYIVISAVHNLDIV GGPRGLTGMRPTIMAMGQVVDLPWMMIWVLVGATGCLFIIRRYVNSTYGKGVIAISQD EIAAEIMSVNTNRLKLITFMVSSGLAGVAGALYAHVVGYLNPGAFDILKSTEAMVMVY LGGMGSLSGSVIAAVLFTLLLEVLRPLQIYKWVIVPLILILLMQFRPEGLMGDKELSD IFPRLRKYFTFK" misc_feature 1465020..1465868 /locus_tag="Deba_1305" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 1465542..1465598 /locus_tag="Deba_1305" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 1465946..1466713 /locus_tag="Deba_1306" /db_xref="GeneID:9493763" CDS 1465946..1466713 /locus_tag="Deba_1306" /note="COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: dvm:DvMF_1163 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B8DKF5 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807268.1" /db_xref="GI:302342739" /db_xref="GeneID:9493763" /translation="MPLLSITGLSKNFGGLTALSGLDMSLEDGEMVGLIGPNGAGKTT VFNLVSGFYQPSAGRIVLDGRPTSGLRPHQIAALGVARTFQNIRLWYEMSVLDNIRVA QHYRMGYGLLDVFRRTARYRRSERRIDAIAHELLEAMDLSQYAHERPKNLPYGLQRLV EIARAMSMRPRLLLLDEPAAGLSSADVDHLIDLVRRIHDEFHVTIWMIEHQMKVVMSL CSRIKVIDLGSSIAEGSPERIQCDPAVIKAYLGDETL" misc_feature 1465946..1466698 /locus_tag="Deba_1306" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 1465955..1466680 /locus_tag="Deba_1306" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 1466051..1466074 /locus_tag="Deba_1306" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(1466060..1466065,1466069..1466077,1466198..1466200, 1466471..1466476,1466573..1466575) /locus_tag="Deba_1306" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 1466189..1466200 /locus_tag="Deba_1306" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 1466399..1466428 /locus_tag="Deba_1306" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 1466459..1466476 /locus_tag="Deba_1306" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 1466483..1466494 /locus_tag="Deba_1306" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 1466561..1466581 /locus_tag="Deba_1306" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 1466710..1467444 /locus_tag="Deba_1307" /db_xref="GeneID:9493764" CDS 1466710..1467444 /locus_tag="Deba_1307" /note="COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: dsa:Desal_2947 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C6C0Q2 ABC transporter related; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807269.1" /db_xref="GI:302342740" /db_xref="GeneID:9493764" /translation="MSRLLEVTGLRARYGKIDALHGVDFHVERGEIVTLIGANGAGKT TTLMAISRARPPDGPRVKAGDIRHQGQSILGLAPEKVVSELNMALTPTGRRIFGNLTV GENLSLATYARRDDKAGIKRDYQRVYDLFPRLAERRRQRSESLSGGEQQMLAVGRALM SRCSFLLLDEPSMGLAPLLVQDMFRALQALNREGMTILLVEQNAKLALKFAHRGYVLS TGEIVASGPCAQLMDDPEVKKAYLGG" misc_feature 1466719..1467441 /locus_tag="Deba_1307" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 1466722..1467411 /locus_tag="Deba_1307" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 1466818..1466841 /locus_tag="Deba_1307" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(1466827..1466832,1466836..1466844,1466983..1466985, 1467214..1467219,1467313..1467315) /locus_tag="Deba_1307" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 1466974..1466985 /locus_tag="Deba_1307" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 1467142..1467171 /locus_tag="Deba_1307" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 1467202..1467219 /locus_tag="Deba_1307" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 1467226..1467237 /locus_tag="Deba_1307" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 1467301..1467321 /locus_tag="Deba_1307" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene complement(1467543..1467983) /locus_tag="Deba_1308" /db_xref="GeneID:9493765" CDS complement(1467543..1467983) /locus_tag="Deba_1308" /note="InterPro IPR000182:IPR016181; KEGG: bth:BT_1258 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C0D719 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003807270.1" /db_xref="GI:302342741" /db_xref="GeneID:9493765" /translation="MEIIKVTTGKKRYLDLLLLGDEQEDMIDKYLERGEMFVLDDDGV KAQCVVTKESAGVYELKNIAVRPDCQRQGLGKALVDFLLSRLAACQTLLVGTGDSPGV LRFYEKCGFNQSHRVKNFFVDNYDHPIFENGAQLVDMIYLKIDR" misc_feature complement(1467651..1467848) /locus_tag="Deba_1308" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(1468104..1468181) /locus_tag="Deba_R0024" /db_xref="GeneID:9493766" tRNA complement(1468104..1468181) /locus_tag="Deba_R0024" /product="tRNA-Gly" /db_xref="GeneID:9493766" gene 1468314..1469621 /locus_tag="Deba_1309" /db_xref="GeneID:9493767" CDS 1468314..1469621 /locus_tag="Deba_1309" /EC_number="6.3.4.4" /note="COGs: COG0104 Adenylosuccinate synthase; InterPro IPR001114:IPR018220; KEGG: dal:Dalk_2837 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: B8FB83 Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase" /codon_start=1 /transl_table=11 /product="adenylosuccinate synthetase" /protein_id="YP_003807271.1" /db_xref="GI:302342742" /db_xref="GeneID:9493767" /translation="MPGVVVVGTQWGDEGKGKVVDLLTQRVDAVVRFQGGNNAGHTVV VGQDKFILHLIPSGVLHENKSCFVGNGVVVDPEVFIAEIDRLEQRGVDVSPRKLRLSE RAHLIMPYHKALDVAREKAKGKSAIGTTGRGIGPCYEDKAARVGVRVVDLLEPEILTE KVRAATTEKNFWLKEYFGAPTLDAEAIIADYLRYAERLRPFVTDVSVELDHMLESGGL VLFEGAQGVHLDIDHGTYPYVTSSNPVAGAASPGAGVGPKRLSGVLGIVKAYTTRVGS GPFIAELEDENGRWMQEKGAEFGSTTGRPRRCGWLDTVVVRQSVRLAGVSCLCVTKLD VLTGLKTLRICTAYKLDDGSIVERIPASLGVLARCTPIYEDLPGWEEDISQARSLEDL PDNCQRYLQRLAELVGAPLALVSVGPERDATIVVRDPLAVKEA" misc_feature 1468314..1469606 /locus_tag="Deba_1309" /note="adenylosuccinate synthetase; Provisional; Region: PRK01117" /db_xref="CDD:179227" misc_feature 1468320..1469567 /locus_tag="Deba_1309" /note="Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-...; Region: AdSS; cd03108" /db_xref="CDD:73337" misc_feature order(1468350..1468352,1468356..1468364,1468431..1468439, 1468443..1468445,1469307..1469309,1469313..1469315, 1469562..1469567) /locus_tag="Deba_1309" /note="GDP-binding site [chemical binding]; other site" /db_xref="CDD:73337" misc_feature order(1468356..1468358,1468365..1468367,1468434..1468436) /locus_tag="Deba_1309" /note="ACT binding site; other site" /db_xref="CDD:73337" misc_feature order(1468425..1468427,1468692..1468694,1468701..1468703, 1468986..1468988,1469031..1469033) /locus_tag="Deba_1309" /note="IMP binding site; other site" /db_xref="CDD:73337" gene complement(1469732..1471816) /locus_tag="Deba_1310" /db_xref="GeneID:9493768" CDS complement(1469732..1471816) /locus_tag="Deba_1310" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FHJ1 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003807272.1" /db_xref="GI:302342743" /db_xref="GeneID:9493768" /translation="MKRIGLKTKLGALLALAAATAIVIAIIGMNGMSDIDQRLERLVN VSAERVKLAARMGQNLLAIQRDEKNAILAETDEAMDAYDRSTAENVKTLQTRRETLLK LSGERGRAKLEQFDKAFEQYMATNKQVRELARLNSNYRARDLSADQGQQAFAAAEKAA EAILAHYAQKMNLLSQSQDLTEVAQLGAAVEMAVTTGRLMRRMLDIHRTEKNLILATT VEAMDTCARQIDERAKQAGEDVGILARDADPSAQASLNAFKDAWGKFMATNAQVIATA RENGNNRAFALSAGEGYKLADQSRSVLTEIVEGNEAEMQADKEAADQDYQRQSTLMIT VSLLGVILSLILGVMVARSVTNSLTKIFKGLKSFSTAELDETATVFRRIVAGLSEGAD QVTSASGQVSTASQSLASGAAEQSASVEETSASMEEMASMTRKNADSASQADGLAQKA NVSMSSLIDSMSEMNRASEETAKIVKTIDEVAFQTNLLALNAAVEAARAGEAGAGFAV VAEEVRNLAMRAAEAAKNTTGLIDDIVRRIKDGAELVGATNQDFTGVAQIIAEIAGSS REQAQGIDQVNAAMVEIDKVVQQSAANAEESAAAAEELNAQSEQMRGFVSEMLQLLDG DSGGASVARRPAARLAASAPAKPGATMKALPYKAGQQRAAAKPTTGPGVIAKKDPAKV IPLDDEADFADF" misc_feature complement(1471370..1471735) /locus_tag="Deba_1310" /note="Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_2; pfam12729" /db_xref="CDD:193205" misc_feature complement(1470842..>1471210) /locus_tag="Deba_1310" /note="Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_2; pfam12729" /db_xref="CDD:193205" misc_feature complement(1470056..1470505) /locus_tag="Deba_1310" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(1472233..1473381) /locus_tag="Deba_1311" /db_xref="GeneID:9493769" CDS complement(1472233..1473381) /locus_tag="Deba_1311" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003661:IPR003594:IPR005467:IPR 000014:IPR004358:IPR009082; KEGG: cph:Cpha266_1787 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: A1BHC7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor signal transduction histidine kinase" /protein_id="YP_003807273.1" /db_xref="GI:302342744" /db_xref="GeneID:9493769" /translation="MSAPNQDHRLLLDIVDNSPAIVFAKNHQGRFTLSNRTHGWAVGR VVEEIIGRGDEDLFDPITARRRHDEDLGVIRSGRAVFVGEWLPTPSGPRFFAGEKFAL RDAQGRVYGMCGILHDLTEHGRADDPPASHAAGPRTDLEHKRRLELLGTLAGGVAHDF RNILTGLLAYAELALTDPTLAANTRARIESLIKAGHRGRELTERIVLFARRREGGDNL IWPAPVIGEAMALLATSLPASVRLRAQLDRAAGPLRAEAVDLHQIVMNLVGNAAQALG ESGGQISVGLSAEASSASGDHPCPPSLVLTVADDGPGMDEQTRQRAFEPYFTTRGGSG GGAGLGLFLVRGIAESLGGGVELGSAPGHGTTVRVVLPSAPRHEQSPP" misc_feature complement(1473019..1473339) /locus_tag="Deba_1311" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(1472752..1472946) /locus_tag="Deba_1311" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(1472767..1472769,1472779..1472781, 1472788..1472790,1472800..1472802,1472809..1472811, 1472821..1472823,1472872..1472874,1472881..1472883, 1472893..1472895,1472902..1472904,1472914..1472916, 1472926..1472928)) /locus_tag="Deba_1311" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(1472908..1472910) /locus_tag="Deba_1311" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(1472269..1472604) /locus_tag="Deba_1311" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1472281..1472283,1472287..1472292, 1472305..1472307,1472311..1472313,1472359..1472370, 1472440..1472445,1472449..1472451,1472455..1472457, 1472461..1472463,1472563..1472565,1472572..1472574, 1472584..1472586)) /locus_tag="Deba_1311" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1472572..1472574) /locus_tag="Deba_1311" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1472362..1472364,1472368..1472370, 1472443..1472445,1472449..1472451)) /locus_tag="Deba_1311" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1474223..1474939 /locus_tag="Deba_1312" /db_xref="GeneID:9493770" CDS 1474223..1474939 /locus_tag="Deba_1312" /note="InterPro IPR001387:IPR015927:IPR010982; KEGG: dvm:DvMF_1678 phage repressor; SMART: helix-turn-helix domain protein; SPTR: B8DLY0 Putative phage repressor" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="YP_003807274.1" /db_xref="GI:302342745" /db_xref="GeneID:9493770" /translation="MPPKKTFIPAGLGERFKSFRADLGLNQSNMASLLGISQSMLSLV ERGEAPMPFEAVCALLGRFPALDLRDLLLGDVTNLMVDSRDSSARASAATAGLIGDDY LAVPLVGDRLAVGDDCFSWAKARRLLLIHRRDLGARQRFVAIRVADEAMRPTIPAGAI VIVDLDERDPRRRQRHVWAIRADADGLLAVRRLQALKNRPGFMIVSDDFDNHPPQIAW TSDARELILGRVIRLWRSLD" misc_feature 1474259..1474447 /locus_tag="Deba_1312" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" misc_feature 1474649..1474912 /locus_tag="Deba_1312" /note="The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88)...; Region: Peptidase_S24_S26; cd06462" /db_xref="CDD:119396" misc_feature order(1474670..1474672,1474793..1474795) /locus_tag="Deba_1312" /note="Catalytic site [active]" /db_xref="CDD:119396" gene 1475208..1475879 /locus_tag="Deba_1313" /db_xref="GeneID:9493771" CDS 1475208..1475879 /locus_tag="Deba_1313" /note="KEGG: tgr:Tgr7_1417 outer membrane protein domain-containing protein; SPTR: Q0YQX8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="outer membrane protein domain-containing protein" /protein_id="YP_003807275.1" /db_xref="GI:302342746" /db_xref="GeneID:9493771" /translation="MFKVIKAVASILALWIMTVAPALADSPVAVTAKVGTLGLQADVT ANFNEFIKGRLSLGALPFNHDISVDSVNYDFDIKLYTAGLLLDVHPFANSFRLSGGVI INSHDFSGSASPSADKTYNIGGTTYTGAQLGRMDADASFNKLAPYAGLGFSNAFTDDG HFGFAFDLGVMWWGSPDISLSATHQNLVPGLSDSLRKEEGKIEDDLNNFKFYPVASVG LSYSF" gene complement(1475945..1476964) /locus_tag="Deba_1314" /db_xref="GeneID:9493772" CDS complement(1475945..1476964) /locus_tag="Deba_1314" /note="InterPro IPR013217; KEGG: dae:Dtox_2658 O-methyltransferase family 2; PFAM: methyltransferase type 12; SPTR: D1JGE4 Putative uncharacterized protein; PFAM: O-methyltransferase" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_003807276.1" /db_xref="GI:302342747" /db_xref="GeneID:9493772" /translation="MKTPPQATNSWKGLHDLLNGAVGAKLLRAGLELRVFDALGDYRS AAEAATAIGAHPENTRLFLDGLTCLGLLEKRQGRYRNLPATQEYLTSASELFLGPLFG MIQTMSIDALDDLATQVRQGPSPAGQADDFAAPELWAQGARDGAGWVLGQVGQQMAEL VAGLEGFANFQRMLDLGGGHGLFAIYFASRHPAMKAVVFDRAPVLVAAKEFIAAYGMG HRVSVAAGDYLSDDIGGPYDLVWASATLNFARHDLDALMAKIRAALKPGGYFVSFQDG LTDERTGPAMLLGALGNALRSGFDMYFDQGEIARAMLRGGFGWVHSRTIHTPMGQMEL DIARS" misc_feature complement(1476011..1476649) /locus_tag="Deba_1314" /note="Predicted O-methyltransferase [General function prediction only]; Region: COG4122" /db_xref="CDD:33879" misc_feature complement(1476152..1476451) /locus_tag="Deba_1314" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1476236..1476238,1476281..1476289, 1476362..1476367,1476419..1476439)) /locus_tag="Deba_1314" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1476993..1478024) /locus_tag="Deba_1315" /db_xref="GeneID:9493773" CDS complement(1476993..1478024) /locus_tag="Deba_1315" /note="InterPro IPR013217; KEGG: dae:Dtox_2658 O-methyltransferase family 2; PFAM: methyltransferase type 12; SPTR: D1JGE4 Putative uncharacterized protein; PFAM: O-methyltransferase" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_003807277.1" /db_xref="GI:302342748" /db_xref="GeneID:9493773" /translation="MVKMPDPQSDFSVFGDMFYGAVASRLLMSAIDLAVFDHLEQAAS AQAVARLLPAHPRNAQLMLDALCALGLLRKSQGQYQNQPPTSEFLVRGKAVYLGHWLQ LADESWQDCLGGLTDKIRSGPGQAPPDEHWNAAAYCERFTRAHAATSLAGVARQMAAI VADAPGFDACRRMLDLGGGPGVNAMAVAQANEGLAAVVFDRPEIVAIARGYIDEYGMS ARVSTMGGDYLSDDIGGEYDLIMVTDSLYYGDAELDQVLAKCRQALAPGGLLVGVHAV LTEEATQPAKMVLAMLPEALAGQAALPERGFLARAMARHGFAEISSRMAMVAGAPMEV NVGRRPAEA" misc_feature complement(1477212..1477511) /locus_tag="Deba_1315" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1477296..1477298,1477347..1477355, 1477422..1477427,1477479..1477499)) /locus_tag="Deba_1315" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1478030..1479475) /locus_tag="Deba_1316" /db_xref="GeneID:9493774" CDS complement(1478030..1479475) /locus_tag="Deba_1316" /note="COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR003593; KEGG: ele:Elen_1434 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C8WH12 ABC transporter related; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807278.1" /db_xref="GI:302342749" /db_xref="GeneID:9493774" /translation="MKLLADKLSFRYAGGAGWALKDASLSLDHGQCVILAGPSGCGKS TLLKAFNGLIPHYEKGRRAGRVLLDGVDLAAMAMHQIARRVGAVFQNPRSQFFTTRVE DEIAFGCENLGTPRPLLRRKVDLAMSRLGLEGLGRRSVFGLSAGQRQKVILAAVLAMG VDALTLDEPSANLDQAALAELVGLLAELKAEGKTIVIAEHRCDYLRGLADRVVLLDDG RISAEIDAKAFFGQSAQEARRLGLRWPGDATPSDDPPASGGHDLALCALRYRHPGRPG DILRGVDLEAHGGRIVAVSGANGCGKTTLALTIAGLLKERGGAVRLDGRPCRPRQRLR RCRMVLQEADHQLFAESVQAELTMAGGAGQKTRVAELLRASGLERVAQCRPQALSGGQ KQRLAVAAALAAQPDVLVLDEPTSGLDGHNLRGMAALLCQAAQAGTIVLAVTIDHQFI DACHARALCLEDGRILAQKPSQPSSTPRQGD" misc_feature complement(1478786..1479475) /locus_tag="Deba_1316" /note="ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CbiO; COG1122" /db_xref="CDD:31319" misc_feature complement(1478819..1479460) /locus_tag="Deba_1316" /note="Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This...; Region: ABC_cobalt_CbiO_domain1; cd03225" /db_xref="CDD:72984" misc_feature complement(1479344..1479367) /locus_tag="Deba_1316" /note="Walker A/P-loop; other site" /db_xref="CDD:72984" misc_feature complement(order(1478876..1478878,1478972..1478977, 1479206..1479208,1479341..1479349,1479353..1479358)) /locus_tag="Deba_1316" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72984" misc_feature complement(1479206..1479217) /locus_tag="Deba_1316" /note="Q-loop/lid; other site" /db_xref="CDD:72984" misc_feature complement(1479020..1479049) /locus_tag="Deba_1316" /note="ABC transporter signature motif; other site" /db_xref="CDD:72984" misc_feature complement(1478972..1478989) /locus_tag="Deba_1316" /note="Walker B; other site" /db_xref="CDD:72984" misc_feature complement(1478954..1478965) /locus_tag="Deba_1316" /note="D-loop; other site" /db_xref="CDD:72984" misc_feature complement(1478870..1478890) /locus_tag="Deba_1316" /note="H-loop/switch region; other site" /db_xref="CDD:72984" misc_feature complement(1478057..1478692) /locus_tag="Deba_1316" /note="ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CbiO; COG1122" /db_xref="CDD:31319" misc_feature complement(1478081..1478659) /locus_tag="Deba_1316" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1478567..1478590) /locus_tag="Deba_1316" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1478141..1478143,1478237..1478242, 1478453..1478455,1478564..1478572,1478576..1478581)) /locus_tag="Deba_1316" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1478453..1478464) /locus_tag="Deba_1316" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1478285..1478314) /locus_tag="Deba_1316" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1478237..1478254) /locus_tag="Deba_1316" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1478219..1478230) /locus_tag="Deba_1316" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1478135..1478155) /locus_tag="Deba_1316" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(1479472..1480203) /locus_tag="Deba_1317" /db_xref="GeneID:9493775" CDS complement(1479472..1480203) /locus_tag="Deba_1317" /note="COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: ele:Elen_0314 cobalt transport protein; PFAM: cobalt transport protein; SPTR: D0YS34 Putative ABC transporter associated permease; PFAM: Cobalt transport protein" /codon_start=1 /transl_table=11 /product="cobalt transport protein" /protein_id="YP_003807279.1" /db_xref="GI:302342750" /db_xref="GeneID:9493775" /translation="MLMREFAFDLHELVKLWLALSAGATAIYCVDWRIQAAVLLMCLA ACLCVGAWRFVAWLAALMAGLALAAVILCRQWPGAAPLAQASYYFLLKFGPLVAMAVF LGACLNVGRLLRSLERLGAPAGVVITLGACLRFLPTAAAEFGQVRHAMRTRGLNAGGR LWLRPDRLLGYVLVPLLLRSLAVGEELARAAVTRGVEAPGRKTSLHGLDFRPADGLTL AGWTLALAALIALDGALRGGSGGVA" misc_feature complement(1479574..>1479978) /locus_tag="Deba_1317" /note="Cobalt transport protein; Region: CbiQ; cl00463" /db_xref="CDD:186013" gene complement(1480197..1480862) /locus_tag="Deba_1318" /db_xref="GeneID:9493776" CDS complement(1480197..1480862) /locus_tag="Deba_1318" /note="InterPro IPR011733; KEGG: ele:Elen_0322 hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; SPTR: C7HSW0 Membrane protein; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185" /codon_start=1 /transl_table=11 /product="Conserved hypothetical CHP02185 integral membrane family protein" /protein_id="YP_003807280.1" /db_xref="GI:302342751" /db_xref="GeneID:9493776" /translation="MNAHTDAHTEPFVPASAHVIDCGGRAATREWVLLGVLNGLVVGL SHLIFSLYLLAGPGAIVLGIYHQCFENMLIASVYLLMALSAPRRWPFTINGMVWGLVG LMMGWWPILPVAAPAGFIVDLIVRRAVPRGRLGWLTVGFAFYSTMLCAANFWPFWLAR HADVVQRQIEMYPAMVQMIEKLTAPVMISQLASAFVTGLLGAHLALRLIAKRFVFDRE SPC" misc_feature complement(1480224..>1480649) /locus_tag="Deba_1318" /note="Hypothetical bacterial integral membrane protein (Trep_Strep); Region: Trep_Strep; cl09823" /db_xref="CDD:164152" gene complement(1480893..1482989) /locus_tag="Deba_1319" /db_xref="GeneID:9493777" CDS complement(1480893..1482989) /locus_tag="Deba_1319" /note="COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0342 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8F919 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003807281.1" /db_xref="GI:302342752" /db_xref="GeneID:9493777" /translation="MRALAKSLLPLAVWAALGVGVCQAETASQASASQLDNVTVTARK VEEDVQKIPISASVFSGALIDDAGLRDMRDLTRLAPNVYLKKSTSENIITMRGVTSFE TSIYGPTALYVDDLMLPLHYAHNIDLVDIERVEVLRGPQGSLYGGNSLAGVINVITRQ PGNEARASLSADFGAYPSAGDHNPGYKLGGGVSGPIVEDRWYLGLSGQIDQNDGYTTN LFNNDQRAGAIDRKTARATLRWTPTSQWDISFIGDILKNDDNIGVYRFDQGPYRTPAY HSWLDTDNYNNEQGDGQALRISHQGQAVKILSVTGRRGYRNDTLQDYDCTADPQNDWG RTLAAYKDTMFSQELRFSSVNAGGSPLSWLAGAYGMIEDTDIDQQNPTIAQSALTSID TNGYALFGEATYTLWDRLRLTGGLRWDGRDSKGHKRDTGVDVSDQMDGSELLPKLSLG YDITADAFGYVTVSRGYLAGGYNYALAVDKESFSYDPEYTWNYELGLKTSWLDRKLTA NLALFYIQMADKQVYNMVGVSSPITKVDNAAQAHSMGVELEMAAQPLQGLEITLGFGL TKAEVDDWTATEWNSDYTELVRVSYDGKTIPNSPEYNGHLAVQYRHATGLFARADLAA VGEVYADAANSILDDPYALLDLRLGYETKRYDVYVWGRNVLDAEYHAIAYNWDGYKMV QDGEPAMFGVTLTLRY" misc_feature complement(1480896..1482839) /locus_tag="Deba_1319" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:162535" misc_feature complement(1480896..1482827) /locus_tag="Deba_1319" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature complement(order(1482516..1482542,1482576..1482608, 1482636..1482653,1482672..1482677,1482696..1482713, 1482741..1482770,1482798..1482827)) /locus_tag="Deba_1319" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature complement(order(1481958..1481960,1482039..1482041)) /locus_tag="Deba_1319" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene complement(1483135..1484139) /locus_tag="Deba_1320" /db_xref="GeneID:9493778" CDS complement(1483135..1484139) /locus_tag="Deba_1320" /note="COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR000005:IPR018060:IPR012287:IPR020449:IPR 009057; KEGG: gvi:glr0326 AraC family transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Q7NNT4 AraC family transcriptional regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_003807282.1" /db_xref="GI:302342753" /db_xref="GeneID:9493778" /translation="MKLIDQQQAMIDFYGQLRGQASPCFDRVLPVPRELGAGRLRALC PRRGMLLLLEDYQLTSDVRIANSNMPLPLGFSFCISGRVQWTISGVKKSFCTEAGQCE LLFTSHTDGQARYEAGQPVRMINLMLSPALLQSYFDQPLAQAGAVCLAQPPTRDQEPI HRSGPFPGAIEGALRQLLRAPCRNAADGLLIQAKVMELVAFLLGLLGLADSQEQLRPS AADAALVERAKGILRARMHQPPTMDRLARMVGASPSKLKRCFAALCDVTVYGYLNHCR MERARELLADDGLTMAHIAAELGYAERTHFSRAFARHFGLPPSEYRLRLADGPPGQRP " misc_feature complement(1483174..1483425) /locus_tag="Deba_1320" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature complement(1483171..1483281) /locus_tag="Deba_1320" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 1484382..1484732 /locus_tag="Deba_1321" /db_xref="GeneID:9493779" CDS 1484382..1484732 /locus_tag="Deba_1321" /note="COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: dal:Dalk_4457 protein of unknown function DUF486; PFAM: protein of unknown function DUF486; SPTR: B8FCH3 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF486" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807283.1" /db_xref="GI:302342754" /db_xref="GeneID:9493779" /translation="MPFAPIALLVLSNVFMTYAWYGHLKDMRAMPIIAVIALSWGVAF FEYCLQVPANRLGSAYFTLPQLKVLQEILAMVVFAFFCVFYMKQELTLDYLWASLCLA GAAFFMFRDLPVAR" misc_feature 1484394..1484711 /locus_tag="Deba_1321" /note="Protein of unknown function, DUF486; Region: DUF486; cl01236" /db_xref="CDD:120496" gene 1484775..1485527 /locus_tag="Deba_1322" /db_xref="GeneID:9493780" CDS 1484775..1485527 /locus_tag="Deba_1322" /note="InterPro IPR013216; KEGG: ote:Oter_0563 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: B1ZSJ6 methyltransferase type 11; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003807284.1" /db_xref="GI:302342755" /db_xref="GeneID:9493780" /translation="MKSNEIAVGRLYDDLAHLVPLVSPPAEYAEEAACWRGVLTEKLG AGGRPSLLELGVGGGHNLSHLTRAYEAVGVDLSPAMLELCRRRNPGVELRRGDMRSVR LGRRFDAVLIHDAISYLLSAQDIAATFATAAAHLRPGGVLIACPDNYAESFVAPQTCQ IDHAADGVALTYFEYLHDPDPTDNAIEAIMTFFIRDQGGLRVELDRHVMGLFPRAVWT EAMAQAGFDVEVRPFALSSLDRPYELLVGVLR" misc_feature 1484925..1485209 /locus_tag="Deba_1322" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(1484934..1484954,1484997..1485002,1485060..1485068, 1485111..1485113) /locus_tag="Deba_1322" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1485652..1489326 /locus_tag="Deba_1323" /db_xref="GeneID:9493781" CDS 1485652..1489326 /locus_tag="Deba_1323" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR013767:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000014:IPR000700:IPR004358:IPR003018:I PR001610:IPR011006:IPR009082; KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; GAF domain protein; PAC repeat-containing protein; response regulator receiver; SPTR: B8FKK2 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003807285.1" /db_xref="GI:302342756" /db_xref="GeneID:9493781" /translation="MGEDKQDLTAVATRPGDPGGQGRQPRAGLDGGRPRAAVTTTAQR LLAIFEKARDAILICDDDGRYLAANHAAGLLTGHTPEELTRLCLWDLTPPAMAEQGRA VWREFLARGELDGEYARLRRDGGEVQVEFRAVANIWPGAHMSMLRDVGRRKEQERLRQ RDEDRLESLLRISQYRAAGDQELLDYALEEAIGLTDSKFGYIYHYSEEHQEFVLNTWS RGVMAQCAVAQPQTVYDLHKTGVWGEAVRQRRPMVINDFGAPHPLKRGYPPGHVALRK FCTVPVIVDERIVAVAGVANKAADYDDADVRQLTLLMDSVWKMLERRRAEQRLEESER RFRTLVDSAPEAIFIQTDGRFAYVNQAAVRLYGAGAADDLLGAAVIERFHPDDRQKVR ERIRDLNQAKLSVPLIEERILRLDGAVVDVEVSAVPFCYQGRDGALVFARDVSERKRA ERAMRESEEMMRSIFRAAPIGIGVVSRRVLLDVNERFCEMTGYAKEEIIGQNAVMLYP TREEFDYVGAEKYRQIAERGTGTVETRFKRKDGRAIHVLMSSTPLNPSDLAAGVTFTA LDITERKRDEQALRQSRDLLQSTIDSLSSHMAILDEHGAIIAVNAAWRKFGQSNGFGA QNHGVGENYLEICREARGNWSSEAPLVAQAIGDILAGRREFYYLEYPCHGPGEERWFA LRMTSFASGGLLRVVMSHENITQRRHAENALRQSEEKFRLVYSASPDAININRVDDGL YLDINEGFTRLTGYTRDDVLGRSSLELNIWHDPADRQRLVAGLREKGYYDNLEAKFRR KDQSVGAALMSARLIEIGGQSCIISITRDISDMKRVADEKARLEAQLRQAQKMEAIGT LAGGIAHDFNNILGAIIGYTELAQELTREGASNADELAQVLRSADRARKLVQQILTFS RKVESDRRPLSLNKIVRQSVGMLEHTLPKMIRIETDLAADLRPVCADGNQIEQIILNI AGNAADAMPDGGRLLIETQNAILGEEYCRLHLDARPGQYAMLQISDTGRGMDQRTREQ IFDPFFTTKEVGKGTGLGLAIVYGIVKDHGGHVSCYSEPDLGSTFKIFLPAQQGPDDQ PPAGQELSVALLRGNETILLVDDEPDLRRLGVHVLASAGYNVLAAGSGEEALELFKAS AGRIDLLVMDLGMPGMGGHRALKEILAIDPRAKVIIASGYAANGQVKASLQSGAAGYV AKPFRRVDLLLTARNVLDAK" misc_feature 1485778..1486098 /locus_tag="Deba_1323" /note="PAS fold; Region: PAS; pfam00989" /db_xref="CDD:144544" misc_feature 1485778..1485969 /locus_tag="Deba_1323" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 1486192..1486587 /locus_tag="Deba_1323" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 1486657..1486983 /locus_tag="Deba_1323" /note="PAS fold; Region: PAS; pfam00989" /db_xref="CDD:144544" misc_feature 1486657..1486851 /locus_tag="Deba_1323" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 1487041..1487388 /locus_tag="Deba_1323" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 1487041..1487226 /locus_tag="Deba_1323" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 1487398..1487790 /locus_tag="Deba_1323" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 1487869..1488888 /locus_tag="Deba_1323" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature <1487899..>1488051 /locus_tag="Deba_1323" /note="EcoEI R protein C-terminal; Region: EcoEI_R_C; pfam08463" /db_xref="CDD:192044" misc_feature 1488202..1488396 /locus_tag="Deba_1323" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1488220..1488222,1488232..1488234,1488244..1488246, 1488253..1488255,1488265..1488267,1488274..1488276, 1488325..1488327,1488337..1488339,1488346..1488348, 1488358..1488360,1488367..1488369,1488379..1488381) /locus_tag="Deba_1323" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1488238..1488240 /locus_tag="Deba_1323" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1488544..1488888 /locus_tag="Deba_1323" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1488562..1488564,1488574..1488576,1488583..1488585, 1488697..1488699,1488703..1488705,1488709..1488711, 1488715..1488720,1488787..1488798,1488844..1488846, 1488850..1488852,1488865..1488870,1488874..1488876) /locus_tag="Deba_1323" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1488574..1488576 /locus_tag="Deba_1323" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1488709..1488711,1488715..1488717,1488787..1488789, 1488793..1488795) /locus_tag="Deba_1323" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 1488967..1489305 /locus_tag="Deba_1323" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 1488970..1489314 /locus_tag="Deba_1323" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1488979..1488984,1489117..1489119,1489141..1489143, 1489201..1489203,1489258..1489260,1489267..1489272) /locus_tag="Deba_1323" /note="active site" /db_xref="CDD:29071" misc_feature 1489117..1489119 /locus_tag="Deba_1323" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1489126..1489131,1489135..1489143) /locus_tag="Deba_1323" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1489267..1489275 /locus_tag="Deba_1323" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(1489348..1489668) /locus_tag="Deba_1324" /db_xref="GeneID:9493782" CDS complement(1489348..1489668) /locus_tag="Deba_1324" /note="Contains Selenocysteine; KEGG: dma:DMR_38750 hypothetical protein; SPTR: C4XN63 Putative uncharacterized protein; manually curated; PFAM: DsrE/DsrF-like family" /codon_start=1 /transl_except=(pos:complement(1489459..1489461),aa:Sec) /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807286.1" /db_xref="GI:302342757" /db_xref="GeneID:9493782" /translation="MQILIVLSNPDPEVKWNAVRLGNFMLNEGEEVTIFLNGPAVDLL DGDSAQFPIAEQAKLFTLSEGVLAAUGKCMGIHGVDASALVSLSTMKFLYEQIKLADK VIGY" misc_feature complement(1489357..1489668) /locus_tag="Deba_1324" /note="DsrE/DsrF-like family; Region: DrsE; cl00672" /db_xref="CDD:186138" gene complement(1489831..1490754) /locus_tag="Deba_1325" /db_xref="GeneID:9493783" CDS complement(1489831..1490754) /locus_tag="Deba_1325" /EC_number="1.1.1.169" /note="COGs: COG1893 Ketopantoate reductase; InterProIPR013332:IPR013752:IPR016040:IPR013328:IPR 003710:IPR008927; KEGG: hmo:HM1_2755 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; PRIAM: 2-dehydropantoate 2-reductase; SPTR: A1HPU2 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="YP_003807287.1" /db_xref="GI:302342758" /db_xref="GeneID:9493783" /translation="MHVAVVGPGAMGLLFACRLSQAGAAVTLIDHRPERAARVAAQGV TIEDETGQSTLAIDITADPAALAKADLALVCVKAHGTAQVAATLAKHLDARARALTFQ NGAGNVEALTQALGPERVLGGITSEGATVLGPGRVRHAGRGQTHIGPAEGPPDAYCGQ AADLLARAGFAVSQVEGVQNLIWTKLIINVGINALTAILDAPNGRLLDLPSARRLMDL AVDEALGVGLAYGVRFLHQDMPQAVRDVARRTAKNVSSMRADVQNKRPTEVEFINGAV CRMGQEKGLATPINQTLTLLVKAIEENQQPA" misc_feature complement(1489846..1490754) /locus_tag="Deba_1325" /note="2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522" /db_xref="CDD:180603" misc_feature complement(1490299..1490748) /locus_tag="Deba_1325" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1489852..1490223) /locus_tag="Deba_1325" /note="Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546" /db_xref="CDD:192064" gene complement(1490765..1491604) /locus_tag="Deba_1326" /db_xref="GeneID:9493784" CDS complement(1490765..1491604) /locus_tag="Deba_1326" /EC_number="2.1.2.11" /note="COGs: COG0413 Ketopantoate hydroxymethyltransferase; InterPro IPR003700:IPR015813; KEGG: chy:CHY_2377 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: Q3A9L0 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoatehydroxymethyltransferase" /protein_id="YP_003807288.1" /db_xref="GI:302342759" /db_xref="GeneID:9493784" /translation="MSQKKVTISDLYQKKAEGRKVTMLTGYDYPTALVLDQAGVDSVL VGDSLGMVCLGYESTVPVTMDEMIHHVKAVRRGLKRALLIADMPFLSYQISPEQAVLN AGRFMKEGGAEMVKLEGGAEMAPTVEAITRAGIPVCAHIGLTPQSVSKLGGYKVQGKD VAGAQKLIDDAKALQGAGADMIVFECIPSPLAAAITKASSMITIGIGGGADCDGQVLV YHDIMGLSGRRVPKMAKQYLDLFGQLSQAVSQYCQEVAGQSFPAEEHGFPMDPAVVAQ LKF" misc_feature complement(1490822..1491583) /locus_tag="Deba_1326" /note="Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a...; Region: KPHMT-like; cd06557" /db_xref="CDD:119342" misc_feature complement(order(1490870..1490884,1490891..1490893, 1490933..1490938,1490945..1490947,1491065..1491067, 1491149..1491160,1491164..1491169,1491197..1491214, 1491266..1491268,1491281..1491286,1491293..1491295, 1491305..1491307,1491335..1491340,1491377..1491379, 1491386..1491388,1491395..1491400,1491407..1491409, 1491422..1491427,1491437..1491454,1491458..1491460, 1491503..1491505,1491512..1491523,1491578..1491583)) /locus_tag="Deba_1326" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:119342" misc_feature complement(order(1490951..1490953,1490957..1490959, 1491050..1491052,1491170..1491172,1491185..1491187, 1491257..1491259,1491347..1491349,1491461..1491469, 1491473..1491475,1491530..1491532)) /locus_tag="Deba_1326" /note="active site" /db_xref="CDD:119342" misc_feature complement(order(1491257..1491259,1491347..1491349, 1491464..1491466)) /locus_tag="Deba_1326" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:119342" gene 1491962..1492825 /locus_tag="Deba_1327" /db_xref="GeneID:9493785" CDS 1491962..1492825 /locus_tag="Deba_1327" /EC_number="1.5.1.5" /note="COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR020630:IPR020631:IPR016040:IPR000672; KEGG: dhd:Dhaf_3496 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: B8FQ53 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain" /codon_start=1 /transl_table=11 /product="methylenetetrahydrofolate dehydrogenase (NADP(+))" /protein_id="YP_003807289.1" /db_xref="GI:302342760" /db_xref="GeneID:9493785" /translation="MAAELIKGLPIAKEIRVEIAKDVEALKAKGVEPTLAVLLVGDDE ASVVYAQSKVKVGDGLGVKVDLKVMAADASQEAVLGQIKAWNADPKVHGILVELPLPK HLGKEAIMEAIDPKKDVDGVHPVNRGYLLGGQEHLALVPATPLSCVALMERAGIDLTG KRVTLVGRGDTVGRPLASLLIKRNATITVCHTRTKDLAAECQRGEIVVAAAGFAGLVK KDMISPGATVIDAGINATPDGKGICGDAAPDVEEVAAKMTPVPGGVGSLTTTIIMQNT IKAIGLQGLGK" misc_feature 1491962..1492798 /locus_tag="Deba_1327" /note="bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional; Region: PRK14190" /db_xref="CDD:184560" misc_feature 1491971..1492321 /locus_tag="Deba_1327" /note="Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763" /db_xref="CDD:189708" misc_feature 1492304..1492798 /locus_tag="Deba_1327" /note="NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080" /db_xref="CDD:133448" misc_feature order(1492331..1492336,1492343..1492345,1492439..1492441, 1492445..1492447,1492463..1492465,1492490..1492495, 1492502..1492504,1492511..1492528,1492532..1492534, 1492538..1492543,1492568..1492570) /locus_tag="Deba_1327" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:133448" misc_feature order(1492388..1492390,1492463..1492468,1492532..1492537, 1492592..1492594,1492598..1492600,1492607..1492609, 1492652..1492654,1492658..1492660,1492754..1492756, 1492763..1492765) /locus_tag="Deba_1327" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:133448" misc_feature order(1492742..1492747,1492766..1492768) /locus_tag="Deba_1327" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133448" gene 1492859..1493494 /locus_tag="Deba_1328" /db_xref="GeneID:9493786" CDS 1492859..1493494 /locus_tag="Deba_1328" /note="COGs: COG3404 Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR007044; KEGG: hmo:HM1_1889 methenyltetrahydrofolate cyclohydrolase, PFAM: formiminotransferase-cyclodeaminase; SPTR: Q24UZ8 Putative uncharacterized protein; PFAM: formiminotransferase-cyclodeaminase" /codon_start=1 /transl_table=11 /product="formiminotransferase-cyclodeaminase" /protein_id="YP_003807290.1" /db_xref="GI:302342761" /db_xref="GeneID:9493786" /translation="MVKNVYEMVFNDFIADAASSSHMPGGGNVSAAVGTLACSMVCMV GNLTVGKKAYAEFDAQAQEVVSACEAIIAKLKDLTLKDMEAFDQYMGVFKMPKETDAE KKARAEALQAAAKKATDVPMEICRTCLEIVKQADKLSHFGNKMAISDVGVGAMTAVAA LKSCMLSVDINLPSIKDQDYVAQAKAERARLFVEAEELCTLAMARVKEKMG" misc_feature 1492880..1493407 /locus_tag="Deba_1328" /note="Formiminotransferase-cyclodeaminase; Region: FTCD_C; cl01350" /db_xref="CDD:194108" gene 1493571..1494209 /locus_tag="Deba_1329" /db_xref="GeneID:9493787" CDS 1493571..1494209 /locus_tag="Deba_1329" /note="COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: scl:sce2577 radical activating enzyme; PFAM: radical SAM domain protein; SPTR: A9G6T5 radical activating enzyme; PFAM: radical SAM superfamily" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003807291.1" /db_xref="GI:302342762" /db_xref="GeneID:9493787" /translation="MLEVCEIFQSIQGEGVDAGLPCAFVRLAGCPLRCAWCDTAYAWQ GGAAMSLPEVLARALAFELELVELTGGEPLAQAETPALLGALCDAGRRVLVETSGALD IAVVDERVHLIMDVKCPGSGMSERMRWRNLDILPPGAQVKFVLADRADYEFARRVIDA HGLGHRARPLLSVVHGRLAPAKVVEWMLADRLPARFQLQLHKFIWPPEARGV" misc_feature 1493574..1494185 /locus_tag="Deba_1329" /note="Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]; Region: NrdG; COG0602" /db_xref="CDD:30947" misc_feature 1493580..1494206 /locus_tag="Deba_1329" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" gene complement(1494224..1494697) /locus_tag="Deba_1330" /db_xref="GeneID:9493788" CDS complement(1494224..1494697) /locus_tag="Deba_1330" /note="KEGG: tro:trd_1922 cadherin domain/calx-beta domain protein; SPTR: C1MN99 Predicted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807292.1" /db_xref="GI:302342763" /db_xref="GeneID:9493788" /translation="MTNKHKTKRQRTRRPWRAVALAAALIVTLAGLAAAPAAALTPQQ RQIITQIRTILDQASNSANVGVDDYGLQQKGAILGRSKAKKATDGFKNARIAWKDVSS AIPMEDNGWWVRVSGFLPGFWIQLGYFDRADDARRLAELINQMARLSATAPPPGE" gene complement(1494660..1494992) /locus_tag="Deba_1331" /db_xref="GeneID:9493789" CDS complement(1494660..1494992) /locus_tag="Deba_1331" /note="KEGG: hut:Huta_1288 hypothetical protein; SPTR: A4A8V2 Sensory transduction protein lytR" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807293.1" /db_xref="GI:302342764" /db_xref="GeneID:9493789" /translation="MIIDGQHRVIHVDFVGRKVKDDGRDLREAVSRAVAQMAGELEAA GGEEALALLGQALVTLGAGIVAQVEGVDEVGELLVDLAVALQLEQTQTELRKIFDDEQ TQDETPKD" gene complement(1494989..1496470) /locus_tag="Deba_1332" /db_xref="GeneID:9493790" CDS complement(1494989..1496470) /locus_tag="Deba_1332" /note="InterPro IPR011031; KEGG: sfu:Sfum_2550 hydroxylamine oxidase; SPTR: A0LLC6 hydroxylamine oxidase" /codon_start=1 /transl_table=11 /product="hydroxylamine oxidase" /protein_id="YP_003807294.1" /db_xref="GI:302342765" /db_xref="GeneID:9493790" /translation="MTRKIAAIFLLLALLPGAAALAAPLSDDSQACLDCHAQATPGIV AAWQASRHAQTTPAQAMKLGGLAAKLSASAPPPEALATSVGCAECHTANADSHPDSFE HQGFQVHAVVSPADCARCHPVESRQFQQNLMAHARGNLVDNPLYMDLAAQVNGVQQVD GAAIAVTPAEPNDEAESCIYCHGSAVRVVGQITRQTDFGEMTFAKLDGWPNHGVGRLN PDGVKGSCAACHSRHRFSMAVARSAYSCAECHKGPDVPAFKVYEVSRHGALFFAQHKD WDMNKTPWEPGKDFSAPTCAVCHVSLLADGEGNVIAQRSHAMNERIWLRLLGLIQSHP HPKSPQTSLIRNADGQPLATTLDGRPATAFLIDQAEQDKRRQTMRRVCLACHGQQWVD GQLARIDAVSQSADAMVLAASKLVRRAWQDGLAQGPAQGGSPFDEYIERLWVEQWLMH ANGARFAAAMMGPDLGVFESGRWPMAKNIRQMQDWLIQRKGEK" gene complement(1496536..1497051) /locus_tag="Deba_1333" /db_xref="GeneID:9493791" CDS complement(1496536..1497051) /locus_tag="Deba_1333" /EC_number="1.16.3.1" /note="COGs: COG1528 ferritin-like protein; InterPro IPR008331:IPR009040:IPR012347:IPR009078; KEGG: sfu:Sfum_1965 ferritin, Dps family protein; PFAM: ferritin Dps family protein; PRIAM: ferroxidase; SPTR: A0LJP8 ferritin, Dps family protein; PFAM: ferritin-like domain" /codon_start=1 /transl_table=11 /product="ferroxidase" /protein_id="YP_003807295.1" /db_xref="GI:302342766" /db_xref="GeneID:9493791" /translation="MIGKAMEAAINKQINAELYSSYLYLAMSAWLDGLQLPGFAHWMR VQAQEEMTHAMRFYAYLGGRGGQTALEAIQAPPGQWASPLACFEEVAAHEAKVTALIN GLMDLALEARDHASVNMLQWFIAEQVEEEASAAEVIGKLKLVAQTHGGLFMLDKDMAA RTFVMPPDLTI" misc_feature complement(1496578..1497042) /locus_tag="Deba_1333" /note="nonheme-containing ferritins; Region: Nonheme_Ferritin; cd01055" /db_xref="CDD:153113" misc_feature complement(1496620..1497033) /locus_tag="Deba_1333" /note="Ferritin-like domain; Region: Ferritin; pfam00210" /db_xref="CDD:189451" misc_feature complement(order(1496662..1496667,1496674..1496676, 1496770..1496772,1496893..1496895,1496902..1496907, 1497001..1497003)) /locus_tag="Deba_1333" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153113" gene 1497414..1500401 /locus_tag="Deba_1334" /db_xref="GeneID:9493792" CDS 1497414..1500401 /locus_tag="Deba_1334" /note="InterProIPR008454:IPR008757:IPR018247:IPR018249:IPR 017683:IPR008969; KEGG: bbe:BBR47_51520 hypothetical protein; PFAM: peptidase M6 immune inhibitor A; Cna B domain protein; SPTR: C3AXM7 Secreted metalloprotease; TIGRFAM: M6 family metalloprotease domain protein; PFAM: Immune inhibitor A peptidase M6; TIGRFAM: M6 family metalloprotease domain" /codon_start=1 /transl_table=11 /product="M6 family metalloprotease domain protein" /protein_id="YP_003807296.1" /db_xref="GI:302342767" /db_xref="GeneID:9493792" /translation="MASVLAGVTLMLLATLFLASQPAMADDAGKKKASEGVYKSMGPQ KATSAYGESVVSRWWGGAGTAQNKQLDDSYMAYSLPFNFPFFGQSFRTIYISTNGWIT FDAASSSFSNSDTTLISTKCIAPLWDDIDLRNGSGVTGSDIYILRNASNVLIRWKGKR YPYYNTSTSVVNVECVLYSNGQIRFNYGVGNNPVDATVGISKGDGSNYILGYHNGRAN CNQVASLLYTPASTNVTVNGYVRTSGGAGINGAWLTYTNQTGSGSNASGYYARSLPRG WSGYVTPIKSGYAFVPNRRQYTNLSANASGNFTGYTSAQLLTMGGRVTVGGSALSGVT VTLTGSSGYANYTLTTNANGYWWAKVPPRWTGTVTPSRSGYTFTPTSRSAPGYTVNWT TCNFTAVVAQNKLIWGSIKTKAGVAMSGVTVTLTGASGKPSYTVTTNASGVYSRYVPY GWSGTLRASRSGYSLYPATRTISNITANLGNQNFMGYTTADTITIGGRVLYNSAGLSG VTVSLTGSGGSVNRTATTNASGYWTTTTPLGWAGSVVASRSGYTFSPTSQTLGARYYN HTCANFVGSVVTTRTEPLLVIMVDFTNFAHTGTEAEWANRIFGTSGLTLRTFYMEASR NTFYFRPANESSGTANNGIVRVRLNRVHPNPEANQSTADQRYQELMRDAILAANPYVN FAAYDTNGDGWLTNRELHLAFYIAGYEASYDSSTPSVWAHRWSLHSYYLNATLPRPDN VYVGCHNDTASRNGGYTMQGQRHGSRQAAFGTLAHELGHDLGLPDLYDVSSNVAEGVG AHCLMSSGSWGAGSGENPGVRPVHPSAWCKIELGFVTPVTVAQAATWSGNLLSTNYTT YAPLKITTSNAQQYFLVEFRKPVGFDAGLQRLFGSGTTGGLAIWHIDTSRRTSNNQDN ANWRRKLVDLEVPGYSSVSGDPLDLGYTRGSLSHYWRTGTSYYRFHGSSTPNTTLYEG TATGISVTATANGTGNYIGVTKP" misc_feature 1499169..1500116 /locus_tag="Deba_1334" /note="Immune inhibitor A peptidase M6; Region: Peptidase_M6; cl11525" /db_xref="CDD:164238" gene 1500502..1501170 /locus_tag="Deba_1335" /db_xref="GeneID:9493793" CDS 1500502..1501170 /locus_tag="Deba_1335" /note="KEGG: ele:Elen_0132 hypothetical protein; SPTR: C8WJC4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807297.1" /db_xref="GI:302342768" /db_xref="GeneID:9493793" /translation="MQPIKQTLLAVALTLALAAPGLCAPALDLPHAYTQPDQGLFIGM RHGDEFFHWDTMIEVYPVAQGDDGRPSFTTQEDQVLKKLNKPLDPENVPANAADLTQT PGLLARFLDETSLERLGVVESGGARWLIVMVDGKALAYAPDYPKNPVIIRDAEGYWCY ARLEGDKLVPTDTRAGKGVAAPAGAVDLGQLRQEAGRIAGTRAAARYPGQKRSADCPT CPHD" gene 1501179..1501640 /locus_tag="Deba_1336" /db_xref="GeneID:9493794" CDS 1501179..1501640 /locus_tag="Deba_1336" /note="KEGG: noc:Noc_0729 hypothetical protein; SPTR: Q3JD53 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807298.1" /db_xref="GI:302342769" /db_xref="GeneID:9493794" /translation="MARKASQAPGRRLLALAVVLLALLAVGAGAAWAELTYRGGKLGA RLEGQALGMVLTEAQRLTGVRFTYGRAAAARSVSATFSGLPLEQGLRRLLAGFNTLII LSPTGRPLAVHILGDGAAAPPAADASTPPPPSDTLALPDAPVADAVADGER" gene 1501725..1503308 /locus_tag="Deba_1337" /db_xref="GeneID:9493795" CDS 1501725..1503308 /locus_tag="Deba_1337" /note="COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482:IPR003593; KEGG: mca:MCA1114 general secretion pathway protein E; PFAM: type II secretion system protein E; SMART: ATPase AAA; SPTR: Q609W3 General secretion pathway protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: general secretory pathway protein E" /codon_start=1 /transl_table=11 /product="type II secretion system protein E" /protein_id="YP_003807299.1" /db_xref="GI:302342770" /db_xref="GeneID:9493795" /translation="MPGFLAKYGFGATATEQEPMLGVGDGATGLLAPAQPHELAEAVA IEGLSYDFLKRYKILPMIVANGALRVAVCDEGLSGPLQALELFCGRPTLPLWAPEEAI LRRLEVLYGLGSGGMGGLGQGADQAGVWALDDEALRDLSSEAPAIRLLNYLVDRAVAV GASDIHVEPYRDRVGVRFRIDGILHEKESFPKGFEASFVSRVKIMARMNITERRRPQD GQITLQVSGRDLDLRVSTLPSVFGESIVIRLLYRDTLGLELAGLGVGQDDLRRFVEMI ERPHGLLLVTGPTGAGKTTTLYAALRRINSSEKKIITLEDPVEYQLPGVAQTQVNAQV GYTFASGLRSIVRQDPDVILVGEIRDRETAYIAIHAALTGHLVLSTLHTNDAASAITR LQDMGIDSFLISSALTGVLAQRLVRVLCPRCRQPLEVSGEVPRRRGLDEPAAKVHLWR PGGCPDCGELGYKGRMGIFELLRVSEPIRALIGEQAHSELIMARAVAEGMTRLIGDGY QKARQGLTSLDEVLRVTIS" misc_feature <1501842..1502054 /locus_tag="Deba_1337" /note="GSPII_E N-terminal domain; Region: GSPII_E_N; pfam05157" /db_xref="CDD:191212" misc_feature 1501857..1503299 /locus_tag="Deba_1337" /note="general secretory pathway protein E; Region: type_II_gspE; TIGR02533" /db_xref="CDD:131585" misc_feature 1502325..1503119 /locus_tag="Deba_1337" /note="PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129" /db_xref="CDD:29995" misc_feature 1502583..1502606 /locus_tag="Deba_1337" /note="Walker A motif; other site" /db_xref="CDD:29995" misc_feature order(1502586..1502588,1502598..1502606,1502661..1502663, 1502667..1502672,1502790..1502795) /locus_tag="Deba_1337" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29995" misc_feature 1502778..1502795 /locus_tag="Deba_1337" /note="Walker B motif; other site" /db_xref="CDD:29995" gene 1503305..1504384 /locus_tag="Deba_1338" /db_xref="GeneID:9493796" CDS 1503305..1504384 /locus_tag="Deba_1338" /note="COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076:IPR003004; KEGG: acr:Acry_0892 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: A0Z1L3 General secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain" /codon_start=1 /transl_table=11 /product="Type II secretion system F domain protein" /protein_id="YP_003807300.1" /db_xref="GI:302342771" /db_xref="GeneID:9493796" /translation="MKAAQAKPPRGRRAKPLRAEELCNFTEGLAVLVGAGLPLDHVLE TVSFMHDSGRVRALTAEMLLAVRGGASLTRAMAEQNGVFSPAYLGLVQAGELSGALAK VLDELAKGLRRNLEIKRHLLTVLLYPAVLLAVSFLAILFIMIYVLPTFVGVFNDMSTP LPPTAAFLLGLGSFMKENSLLLGLAFAAALGVVFWAMGNQAARQVIDRALLRFGPQRN VLANWLTSQYFRTLGLLVEGGVPLPEACRQATAAVGNRHFRRGLAGVEALLKEGRSLG GALAAGKVIPAAPLRMVVLGEEAANLPTMLGYAARHLENKVKTDIDRVVRLVEPAIIL IMGVVVGFIVVTMINTILSLTQGGI" misc_feature 1503416..1503748 /locus_tag="Deba_1338" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" misc_feature 1504037..1504348 /locus_tag="Deba_1338" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene 1504389..1504826 /locus_tag="Deba_1339" /db_xref="GeneID:9493797" CDS 1504389..1504826 /locus_tag="Deba_1339" /note="COGs: COG2165 Type II secretory pathway pseudopilin PulG; InterProIPR012902:IPR013545:IPR001120:IPR000983:IPR 010054; KEGG: mca:MCA1116 general secretion pathway protein G; PFAM: type II secretion system protein G; SPTR: Q609W1 General secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain" /codon_start=1 /transl_table=11 /product="general secretion pathway protein G" /protein_id="YP_003807301.1" /db_xref="GI:302342772" /db_xref="GeneID:9493797" /translation="MNHKRSNRLRRAEQGFTLLEVLIVVIILGLLAALVTPKLFGTLG KAKSQVAKTQIELVAGALDRYRLDVGNYPATADGLAALIEQPAGAVGWAGPYLKKGVP KDPWDNDYQYASPGQHGDYDLYSLGRDKAEGGEDEDADVVSWQ" misc_feature 1504428..1504823 /locus_tag="Deba_1339" /note="general secretion pathway protein G; Region: typeII_sec_gspG; TIGR01710" /db_xref="CDD:130771" misc_feature 1504506..1504775 /locus_tag="Deba_1339" /note="Bacterial type II secretion system protein G; Region: GSPII_G; pfam08334" /db_xref="CDD:192005" gene 1504795..1505247 /locus_tag="Deba_1340" /db_xref="GeneID:9493798" CDS 1504795..1505247 /locus_tag="Deba_1340" /note="InterPro IPR012902:IPR001120; KEGG: eba:ebA1616 general secretion protein H; SPTR: Q5P6Q7 General secretion protein H; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807302.1" /db_xref="GI:302342773" /db_xref="GeneID:9493798" /translation="MKTPTSSAGSEGFTLLELLLALVILGLTMAVALPELGGWRDDWA LREAAFRARLHLGQARLRAIEEGRVVLVSQAERGAALWIDGAAVELGGAARRVSVAPA QATPGRRPALRFYPDGGADAGVIWLDSGRRRLGLALEPASGRVLLAGR" gene 1505259..1505666 /locus_tag="Deba_1341" /db_xref="GeneID:9493799" CDS 1505259..1505666 /locus_tag="Deba_1341" /note="InterPro IPR012902:IPR001120; KEGG: ctt:CtCNB1_0632 general secretion pathway protein I; SPTR: B8KPH1 General secretion pathway protein I; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain" /codon_start=1 /transl_table=11 /product="general secretion pathway protein I" /protein_id="YP_003807303.1" /db_xref="GI:302342774" /db_xref="GeneID:9493799" /translation="MGVGQKGFTLIEFLVAVVVVGLALGVTIQAVLEQGRATERLAQG GEVALCAQRNMARLMGQPFLAAGVYHGEDVGGVAWRATVRRLSPDPPRDPVARRGGQR RARPTAVLLEISLCAGKKGAGRLCLASQRLAVR" gene 1505667..1506296 /locus_tag="Deba_1342" /db_xref="GeneID:9493800" CDS 1505667..1506296 /locus_tag="Deba_1342" /note="InterPro IPR012902; KEGG: noc:Noc_0756 general secretion pathway protein J; SPTR: Q3JD27 General secretion pathway protein J; PFAM: Pseudopilin GspJ; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807304.1" /db_xref="GI:302342775" /db_xref="GeneID:9493800" /translation="MPRHDRHTAGFTLLEFLICLVLASLLIGLLVQAQGFVFRAWRGG DAQVLAQRRLNHCLDVMLGQLGSAAPFRAPGLDGRGLAFHGDGRQVLFATSQAVGGGG LAGLWYVQYRLAGDGDAMRLESRQWPAGRGVWRELSAEWAVATVLLDGLSEARFSFQG RLPGGGVRWRGQWSGRQGELPLAVRLEFVKDGWRRDWQAPLMCGGRRHD" misc_feature <1505976..1506245 /locus_tag="Deba_1342" /note="Pseudopilin GspJ; Region: GspJ; pfam11612" /db_xref="CDD:152048" gene 1506289..1507302 /locus_tag="Deba_1343" /db_xref="GeneID:9493801" CDS 1506289..1507302 /locus_tag="Deba_1343" /note="COGs: COG3156 Type II secretory pathway component PulK; KEGG: dat:HRM2_30150 GspK2; SPTR: C0QK72 GspK2; PFAM: General secretion pathway protein K" /codon_start=1 /transl_table=11 /product="Type II secretory pathway component PulK" /protein_id="YP_003807305.1" /db_xref="GI:302342776" /db_xref="GeneID:9493801" /translation="MTRPARRRGGGREGFALVLALWFLVVFLLAVLAMGHFLRLETRA DAFRQGRLGAYYAARAGFGQAAALLCGLWSDGRPGAFVHRGWQSWSQGRYQGRFLVQS EGGKFNLNNAGQGAVARALQRLGLERGRAQALRDAIFDWVDGDNTPRLAGAEARFYGQ VMGAPGPRNGPFDCLGELAGVAGVEPEMLLGLGPRARELGLTPGRGLWSVFTVYGDHR AVNLNSAPPEVLHCLPCMPARAVERLLKARAREPLHDVDQARRALGEEVYNLVRPWVN LDPSPYYTVISQGWRKGSATRRSLLAVVRLDEMARVDICYWIDDLYYALPDDGDGSGG LKR" misc_feature <1506595..1507230 /locus_tag="Deba_1343" /note="General secretion pathway protein K; Region: GspK; pfam03934" /db_xref="CDD:146520" gene 1507299..1508708 /locus_tag="Deba_1344" /db_xref="GeneID:9493802" CDS 1507299..1508708 /locus_tag="Deba_1344" /note="KEGG: cti:RALTA_B0204 exonuclease SbcC; SPTR: B2AI05 Exonuclease SbcC" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807306.1" /db_xref="GI:302342777" /db_xref="GeneID:9493802" /translation="MIGWPAMGRGGGLVVALNLERRRGAAALLRVVGSRPPLVVAQRA LPLGAEALPHEDQRQRLAREISSLTAKAGPGRLAAWISLPSQAASFHPTPAPEGLGRR LNWRPEDHLAGLTPFAPADLRAAELRATAGGPWILTALRRDLVDDAQLLAAQCGLRLT GLAPRAAYLALALAPLAGRNDDSRLVYAGDDCLDWLVFQRGQAVAMGRVMADGPLAAE LAGVLASQMLAHGGRSGAVAIICCGPRAVEAQALLEGLDWPRLAPERRITLDAASEPG HIAPNSLGWPLFPLVGFAAVVGAGGRPPMNLAPQAEGPGWLERPGLSLRLGAAVLVLA AMLAGGQVWRQWRLAELARERVAELRTELKSLSAAGDPGVAKGLATANEALARRGEGL RLLQRLGQILPAEASLLRLEYDGRRASFVVRSIAPNVVAQALDNQPDMALAELTDAPA ADGGQVVEQSVVMDLSAFR" gene complement(1508705..1509133) /locus_tag="Deba_1345" /db_xref="GeneID:9493803" CDS complement(1508705..1509133) /locus_tag="Deba_1345" /note="KEGG: pol:Bpro_0175 17 kDa surface antigen; SPTR: Q12H52 17 kDa surface antigen" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807307.1" /db_xref="GI:302342778" /db_xref="GeneID:9493803" /translation="MSRRLLNASLLLAAIALAVAVAWSLLAPPRPPTPIAPAAPPLAA DPGQAADVETLEPPERDIFEHGPSAGAVAAETGGRLSVLGVVLGPRASFVLVRDGEDG AVRRVHVGEKVDGKVVEGFDDQFLRLRAADGSRALIPVAP" gene complement(1509142..1509741) /locus_tag="Deba_1346" /db_xref="GeneID:9493804" CDS complement(1509142..1509741) /locus_tag="Deba_1346" /note="KEGG: mno:Mnod_1789 hypothetical protein; SPTR: B8IR77 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807308.1" /db_xref="GI:302342779" /db_xref="GeneID:9493804" /translation="MTNAPNDAPAPSGRWRAAGALLASLHAKSPLVFWTAVLALVVGG HVLLVEPLLEQTAQWRQEALTLTQNAATLQALLERERAIKARREAETARLARQLQRPS EGQLPAVGQQMAAQIDDLARQAGLRQITVTLGDPRQESGLLKISARLAASGDMNSLAT LLALAAQAQPPLLVESYAIGQGQGGALGLDLALCRPFLP" gene complement(1509742..1510401) /locus_tag="Deba_1347" /db_xref="GeneID:9493805" CDS complement(1509742..1510401) /locus_tag="Deba_1347" /note="InterPro IPR000045; KEGG: bbr:BB0792 type 4 prepilin-like proteins leader peptide processing enzyme; PFAM: peptidase A24A prepilin type IV; SPTR: A3W196 peptidase A24A-like; PFAM: Type IV leader peptidase family" /codon_start=1 /transl_table=11 /product="peptidase A24A prepilin type IV" /protein_id="YP_003807309.1" /db_xref="GI:302342780" /db_xref="GeneID:9493805" /translation="MAGVSGAAVAGAALGPALHALARRLTGLRPRPAGPWLIWPCLLG ALCLGAPLAVRGVGPTAALQAVVLCGLAVGALADAMAGIIPDAVNLALLALGVLAAPL LPSADWLTALIDGCVAAGLLAGLALAFARLAHRPGLGWGDVKLLGALGACLGLANALA TLFLAAATALLWAGVVAAWRGWPSGRRLAFGPYLALWGGVALLVDPHHRPWLNLLLGA A" gene complement(1510403..1512643) /locus_tag="Deba_1348" /db_xref="GeneID:9493806" CDS complement(1510403..1512643) /locus_tag="Deba_1348" /note="COGs: COG1450 Type II secretory pathway component PulD; InterProIPR005644:IPR004846:IPR004845:IPR001775:IPR 013356; KEGG: dat:HRM2_30110 GspD2; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: C5S7Y5 General secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D" /codon_start=1 /transl_table=11 /product="general secretion pathway protein D" /protein_id="YP_003807310.1" /db_xref="GI:302342781" /db_xref="GeneID:9493806" /translation="MTKRSHIVLAMVLGLALLAAAGCAGDGAAPARQNDSLWRIPPSE RPKTSAANRDELLLEERRAQRPSQIGPEISSPLSGVAGPAPRGQDEAAAEDGQSHIIN FNQAPLDEVIRVFADLTGATIITPAQIRGTVTISSGRRIPQSGLLPLLEAMLETNGYA LLREGDSFRVSSLASARKGPTQIMLADRLAQAGPDGYAINVYYLRHIAASDAAKALEP FVSEGGRITAVMPANLLVVADTAPNQAKVAELSRMLDVPAVNRVGIRLYPIRNVDVGR LSAELQSIFGAMGISSKPASGMWAQIIALPQLSSIAVVSTYQHMFKRVDQWLEELDRQ ISDAETGIYVYYCQNGDATVIAEVLSGLFDGQEGEEAKSRPQEQEQQFQSQPASLTED RRRSGDRAERRYTGDRLNRDQREDPRELEAERPQERTFSRRLEKSIRIVVDRHTNSIV LRAPRRDLKYLLKTLHKLDVFPKQVLIEVVIAEVTLDDQLKLGVEWRYLTENGATFSD INLKPDADLLPTSGLVYTIAKTNELLFTLKALAQKDKLQVISSPLLLAAENQSARILV GREIPIITDLTTSEDISTSTGNKVVDRSIEYRDVGIILTVTPRINDSGVVRLNIRQEV SDVLTDSFGDTGSPAFSQRTATTNVVTTDGQSIVLAGLIQETKHKIDSGVPFLSDVPI LGYLFKTEKDVDSRTELILTITPHVIHDMNDARHIVQSLREQERFSRQMAAPPPSRQQ PGDGLD" misc_feature complement(1510490..1512343) /locus_tag="Deba_1348" /note="general secretion pathway protein D; Region: type_II_gspD; TIGR02517" /db_xref="CDD:162900" misc_feature complement(1511873..1512043) /locus_tag="Deba_1348" /note="Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958" /db_xref="CDD:146539" misc_feature complement(1510520..1511029) /locus_tag="Deba_1348" /note="Bacterial type II and III secretion system protein; Region: Secretin; cl02829" /db_xref="CDD:164025" gene complement(1512689..1513117) /locus_tag="Deba_1349" /db_xref="GeneID:9493807" CDS complement(1512689..1513117) /locus_tag="Deba_1349" /note="KEGG: gem:GM21_2663 Ig-like, group 1; SPTR: C6E0S5 Ig-like, group 1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807311.1" /db_xref="GI:302342782" /db_xref="GeneID:9493807" /translation="MSLAQTQKPSVVRCAFLACVLLLMSCLAACSGGSESGGSGGGTG YTVVVSVSQSMVPTQGQTTITATVADKDGPVTAAVQLIFSSMLGGSFTNTSGTKTNAF TTSNGSATAIYTAPEKAGNDKITVSYGGAYGYTWINVYSR" gene 1513322..1514137 /locus_tag="Deba_1350" /db_xref="GeneID:9493808" CDS 1513322..1514137 /locus_tag="Deba_1350" /EC_number="5.4.2.1" /note="COGs: COG0588 phosphoglycerate mutase 1; InterPro IPR013078:IPR001345:IPR005952; KEGG: mmr:Mmar10_2498 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; PRIAM: phosphoglycerate mutase; SPTR: Q0ALQ9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase 1 family" /protein_id="YP_003807312.1" /db_xref="GI:302342783" /db_xref="GeneID:9493808" /translation="MESRPHIMIRANLILLRHGQSQTNQSQTFTGWLDAPLSDLGRAQ AARAGCLLAQAGPPVQAAFCSRLSRAAQTLELALAAMGRPDLPRQALWRLNERHVGQL QGVAKDEARARFGPELIHAWRHGLDLAPPPLSPEDPRHPRHDPLHADVDPALLPASES LGQLVWRVEPVWRGELAPRLAAGQNLLVAGHGLSLWAVCRLVLADQGLDLPSFSMPNA NPLILAFDRRGRLFSMSYLDQAAAGDLPPLSSLNPLNCRHDGQRAAALVQRRG" misc_feature 1513355..>1513627 /locus_tag="Deba_1350" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature order(1513370..1513375,1513526..1513528) /locus_tag="Deba_1350" /note="catalytic core [active]" /db_xref="CDD:132718" misc_feature <1513820..1514032 /locus_tag="Deba_1350" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" gene 1514398..1516248 /locus_tag="Deba_1351" /db_xref="GeneID:9493809" CDS 1514398..1516248 /locus_tag="Deba_1351" /note="KEGG: syn:sll7067 hypothetical protein; SPTR: Q6ZED1 Putative uncharacterized protein sll7067" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807313.1" /db_xref="GI:302342784" /db_xref="GeneID:9493809" /translation="MCEQKFRLVLLETSGNQAYIFAANKLREIMGASQIVHEVGTKLV CESLDAVCPGRHNLYWREQEQCVEFKDGRLFEGDCQAEVMVAASGKALILVADNGGVK DDCLANKLIRAWSLRVCRYLPGVDATGVYSAARCWSEGGAVAAANLQAHQRFEQARLR RRGPLARFQRLPVTAACVSSGGPASGFFSETPGKSTAGQGEPAAQSDKKEPLFAGSRT TLTKRQRQRYNKTRERFNQLYGPDCRLFGNLLNHDTFDKMGADWLAVIHADGNGLGQV FLNFGTHVGKIKPALKGGALNRAYVDAYREFSRGLDECAQKAFKQALLVCKALDLVKR AGDDTWRFPIFPVVLGGDDLTVVMTGELALPFCAAFLKAFEGQVAGWQQELPEDDSAV EPDAIVQYICQKALGAPRLGICAGVAIIKPHFPFHVAHDLAEELLRSAKQVKAKALGK PCSALDFHILHDSSFTSLDDLRQRLRPAPGMLLHAKPYALGAGVVAGDGADDAVAQWL ACHDWERFCCAAQALQTKLPDASGVYKPILPPSQAHAVVENIWAVDKHAESAFQYGTM KRYGDFADAWRAATGDDCLFFCECEENKTTRLTYFLDALEAKGFMGGNDE" misc_feature <1515184..1515741 /locus_tag="Deba_1351" /note="CRISPR/Cas system-associated protein Cas10; Region: Cas10_III; cl13853" /db_xref="CDD:196727" gene 1516241..1518724 /locus_tag="Deba_1352" /db_xref="GeneID:9493810" CDS 1516241..1518724 /locus_tag="Deba_1352" /note="InterPro IPR005537; KEGG: syn:sll7066 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Q6ZED2 Putative uncharacterized protein sll7066; PFAM: RAMP superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807314.1" /db_xref="GI:302342785" /db_xref="GeneID:9493810" /translation="MNNDCKLIIRMDSDWRVGLGAGGEGGADRQVLRDHDGLPYLPAK TVTGLWRDGCEMVAQALDDIANRACGDDDDKQTGWRGAVADIFGAQPPDWGDVAQELD AQAASPARLSVRPARFSPELCAAVAHKPALRAAFCFLQPGVKIDSDSGRAQDNHLYFS ETARAGAELTAKLELGEGLGEKHLALLWAGAKAVRRIGGDRRRGKGRCRLELRGAVWD DPSKRWRDLLDPENPPERLIQHTPKHPDDRPADDDERCPEATAQAGGWQALDYRLEAN TPLVAVQTVAGNVVKSLDYVPGTMLLGHLGQALRAATGQDPDKGDMAVRRWIADGRVA LTNAYPEVDGQPSLPAPMAFERPTEDAADCAITVRNSLLASSGDAGARGEDGGTPGDV VKQYKALRGGYVAQDDAGETFYHQPSLGLNMHNTIEDQRQRPSQQVGGLYAYQHIRAG ARLRGQIRLAPELADIATDQTKRQKLREALNKSIRVGRSKKDDYGQAQFTLLDDAPSE AVVGLGAPNESADGKLVVWLLSDLLARDELLAFGGHPDGLAKALEAELGVTLELDEAE KTPSCRGRHQRRDGFQVNWGLPAPSLVGLAAGSCFRFKKVEGQWRPEDLQRLAMSGLG ARRAEGFGQVALNPSFLRDAPPQLKRGEKADAAGGSPDEASSPLAKNDRDDKEFAYLR QAEEAAWRAAVNRAALAVAYQKKPLGECWPTKGVLGDLRAHLVAGADDKPLKRLYLWL NHEGKEPKLPDGVLKKLRGYRQNDGPIWGDLGLGDDALEKITATAGGVNELKKQLGPW AVRATLLCICRVLQGREDASKAQNKGGAR" misc_feature 1516322..>1516732 /locus_tag="Deba_1352" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cd09726" /db_xref="CDD:187857" misc_feature <1517978..1518160 /locus_tag="Deba_1352" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cl00592" /db_xref="CDD:193881" gene 1518721..1520364 /locus_tag="Deba_1353" /db_xref="GeneID:9493811" CDS 1518721..1520364 /locus_tag="Deba_1353" /note="COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537; KEGG: syn:sll7065 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Q6ZED3 Putative uncharacterized protein sll7065; PFAM: RAMP superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807315.1" /db_xref="GI:302342786" /db_xref="GeneID:9493811" /translation="MSRPIRGKVVVRGELCCRGPLAVGGLAVDEAVDLTLAQNGRGNY YVPGSSLAGPMRALLREALGVDKENEPPCGASDVDEEKALLCLLFGFQDDRKHSERSA GKGSPDNGQASLLIVDDAEITPLCDAPRWEPRDGVAIDRVSGAASHGLLHSRAVIPPD SRIPLRLELDLPLDDGLAQKCRHALGWLLGHMQEHGLRLGGGKTRGLGLVTLECPEFR VYDFCRDGKKESKEDLFAWLTDDEKPSKKTSNDPSKLLAAHLKKDFSAPPYVRASIEW RALGPLMVKSGREGQGIKALPLMGATGCGDLAAVLPGSSIKGALRARAERIMRTVLDP KKFPENELAGCADFAKQIKVPLLDQIKVPLVRELFGTTANAGLLTVEDVYHQRKVKAE AWLAEKFDKKTFAQRDHVAIDRFTGGAADGLLFSELSPPPDQWSPLVIRLEFPRRSEA GKDRSGMAMCALLLLLLRDMQDGLLPLGYGVNRGLGQIELTKVSWKAAGALPDGGGDL GEIFHGRAGAKFPFGVEVTELNEAWTAWVTSNNGGGNGR" misc_feature 1518769..>1519197 /locus_tag="Deba_1353" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cd09726" /db_xref="CDD:187857" misc_feature 1519561..>1520013 /locus_tag="Deba_1353" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cl00592" /db_xref="CDD:193881" gene 1520354..1520968 /locus_tag="Deba_1354" /db_xref="GeneID:9493812" CDS 1520354..1520968 /locus_tag="Deba_1354" /note="KEGG: syn:sll7064 hypothetical protein; SPTR: Q6ZED4 Putative uncharacterized protein sll7064" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807316.1" /db_xref="GI:302342787" /db_xref="GeneID:9493812" /translation="MGDKHLYYYTIDNVKLRTIIRPLDKDVALLYGGFGCQFAIVSNA TKAGNDQFRFRGKSLSPQQFYEARIFGRGYEVRWLSHGRGDRCGKAVWLCDNEDGGPQ SVTGNDWGEAAKKLYLECYDQDYLLWGKPAEEERDDVTGQRWTRLREFRIDDLWVPCA READKRVFLRTKEYLGVEDDYGNVGVLAECLVELCCKPEKAEDE" misc_feature 1520435..1520935 /locus_tag="Deba_1354" /note="CRISPR-associated protein, TIGR03984 family; Region: TIGR03984" /db_xref="CDD:188499" gene 1520968..1522677 /locus_tag="Deba_1355" /db_xref="GeneID:9493813" CDS 1520968..1522677 /locus_tag="Deba_1355" /note="InterPro IPR005537; KEGG: syn:sll7063 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: B5WA38 Putative uncharacterized protein; PFAM: RAMP superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807317.1" /db_xref="GI:302342788" /db_xref="GeneID:9493813" /translation="MTLGAFHIIVKGNKTKYTFNYPDRNGETRNIMPDLTSVEPSLQP ISEKIKEGDKVEFDIANGKAYNVRPVGSDWRGPEPDAGKDKMGDFHNPYNFIPTPSRE NYVGDLGDGNPRGHHVYHEDCYSGRIRVKMTTVTPLIVPDTAKVDPNIEHKKYDPLLD EKGLPIVPPTSIKGMLRAAFEAVTNSRMGVFAGSYEIRSKREQRERRQEKEDVTAHID ESLLPATEMSQLSPADRVFGWVGQEGKAKSAYRGNLRVGHVRCLEDCPQKALDTFDDG LPLAILGQPKPQQGRFYMAQNTNGDPVGKGVDKEKAGYGGKNYLRGRKVYPHHGHLVV LDGYWDNPMEDRTQKAINGFFQEYRQPRANDEEQRTSQNRSITGWVRPKVAFEFDLWV DNLSKFELGALLWLLSLKENHCHRLGGAKPLGLGSVRLEIDRAQTQLATGQDMKARYQ SLTDLDGGLWPKTADEENVIDGAIEAYKSAIASTNDKEFEKVSYIAAFRRAAKGYDNK LPVHYPRARQSNQQEGKPAPPNPNGESFKWFVFNEGDPNNRYCLPDIRKDAGLPILSP PKK" misc_feature 1521241..>1521540 /locus_tag="Deba_1355" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cl00592" /db_xref="CDD:193881" misc_feature <1521613..1522413 /locus_tag="Deba_1355" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cl00592" /db_xref="CDD:193881" gene complement(1522681..1523073) /locus_tag="Deba_1356" /db_xref="GeneID:9493814" CDS complement(1522681..1523073) /locus_tag="Deba_1356" /EC_number="4.2.1.108" /note="InterPro IPR010462:IPR014710:IPR011051; KEGG: hch:HCH_01508 L-ectoine synthase; PFAM: ectoine synthase; PRIAM: ectoine synthase; SPTR: Q2SLV8 L-ectoine synthase; PFAM: ectoine synthase" /codon_start=1 /transl_table=11 /product="ectoine synthase" /protein_id="YP_003807318.1" /db_xref="GI:302342789" /db_xref="GeneID:9493814" /translation="MLVRTLEQAQKTPRRVTAPNWESTRLLLREDGMGYSFHITTIYP GTETHIHYKHHLETVYCLEGEGEVRTLADGQRHAIAPGVMYALDRHDEHLLRARTTMR LACVFNPALAGHETHDANGVYPLLDDEG" misc_feature complement(1522693..1523073) /locus_tag="Deba_1356" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene complement(1523089..1524357) /locus_tag="Deba_1357" /db_xref="GeneID:9493815" CDS complement(1523089..1524357) /locus_tag="Deba_1357" /EC_number="2.6.1.46" /note="COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterProIPR005814:IPR001917:IPR015421:IPR004637:IPR 012773:IPR015424; KEGG: hch:HCH_01509 diaminobutyrate--2-oxoglutarate aminotransferase; PFAM: aminotransferase class-III; SPTR: Q4JQJ4 L-2,4-diaminobutyrat transaminase; TIGRFAM: diaminobutyrate/2-oxoglutarate aminotransferase; 2,4-diaminobutyrate 4-transaminase; PFAM: Aminotransferase class-III; TIGRFAM: 2,4-diaminobutyrate 4-transaminases; diaminobutyrate--2-oxoglutarate aminotransferase" /codon_start=1 /transl_table=11 /product="diaminobutyrate/2-oxoglutarate aminotransferase" /protein_id="YP_003807319.1" /db_xref="GI:302342790" /db_xref="GeneID:9493815" /translation="MKTIERLESNVRSYCRSFPVKFDRAQGAVLSDHQGHAYLDFLAG AGTLNYGHNHPVLKKALGDYLAADRIVHGLDMATVAKKDFLDTFERLILKPRGLDYKV QFTGPTGTNAVEAALKIARNHTGRHNVVAFTNAFHGVTSGSLACTANSYYRQAGGMPP QGVNFAPYDGYLGPDVDTVDVLEKMILDGSSGLDLPAAVIVETVQGEGGLNVAGMGWL RKLAALCRRHDILLIVDDIQMGCGRTGWFFSFEPAGVKPDIVTLSKSLSGYGLPMSLV LLKPRLDNWRPGEHNGTFRGNNLAFVTARAALAHFWADDALALDVRRKGKILAERLRA VAEDDGGIESRGRGMAQGLDCKSGERAGRICRRAFELGMVIETSGSEGQVVKCLCPLT IGDQELSRGLDILAQSVAETPLDDSDAIAC" misc_feature complement(1523122..1524357) /locus_tag="Deba_1357" /note="diaminobutyrate--2-oxoglutarate aminotransferase; Validated; Region: PRK09264" /db_xref="CDD:181737" misc_feature complement(1523131..1524345) /locus_tag="Deba_1357" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature complement(order(1523566..1523568,1523644..1523649, 1523653..1523655,1523752..1523754,1523941..1523943, 1523947..1523952,1524028..1524036)) /locus_tag="Deba_1357" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature complement(order(1523566..1523568,1523644..1523646, 1523653..1523655,1523752..1523754,1523947..1523952, 1524028..1524033)) /locus_tag="Deba_1357" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(1523566..1523568) /locus_tag="Deba_1357" /note="catalytic residue [active]" /db_xref="CDD:99735" gene complement(1524387..1524896) /locus_tag="Deba_1358" /db_xref="GeneID:9493816" CDS complement(1524387..1524896) /locus_tag="Deba_1358" /EC_number="2.3.1.178" /note="InterPro IPR000182:IPR016181:IPR012772; KEGG: bav:BAV2374 L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; PRIAM: Diaminobutyrate acetyltransferase; SPTR: Q2KY16 L-2,4-diaminobutyric acid acetyltransferase; TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: acetyltransferase (GNAT) family; TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase" /codon_start=1 /transl_table=11 /product="L-2,4-diaminobutyric acid acetyltransferase" /protein_id="YP_003807320.1" /db_xref="GI:302342791" /db_xref="GeneID:9493816" /translation="MEPLIRIPTLADGAAVHEVVLACPELDANSRYAYALLCHEFDQT ARVAEIDGVVVGFVCGFRPPRRPRSLFVWQVATLPAARGLGLAGCMIEAIVADSRANG QPIDHLEATVAEHNLASRRLFAGLARRLGAPLAVEPYITAETFGAMKHPAEPLIRIGP ITNQRGRGG" misc_feature complement(1524591..1524758) /locus_tag="Deba_1358" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(1524633..1524638,1524666..1524674)) /locus_tag="Deba_1358" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 1525162..1526664 /locus_tag="Deba_1359" /db_xref="GeneID:9493817" CDS 1525162..1526664 /locus_tag="Deba_1359" /EC_number="4.2.3.1" /note="COGs: COG0498 Threonine synthase; InterPro IPR001926:IPR000634:IPR004450; KEGG: dal:Dalk_4397 threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; PRIAM: Threonine synthase; SPTR: B8FNA7 Threonine synthase; TIGRFAM: threonine synthase; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase" /codon_start=1 /transl_table=11 /product="threonine synthase" /protein_id="YP_003807321.1" /db_xref="GI:302342792" /db_xref="GeneID:9493817" /translation="MRPEQFAPQDQERLLPTPGGQMAYRCLGCGGHHGIEKLLYTCPN CGQVLLIEDRAFDRLKALDGPGWRRIFDLRRMLNIPALKGVFRYAELLAPVIPLDSVL YLGEGHTPIVEASPLLKQTLGLDFAFKNDGQNPSASFKDRGMAVALSYINYLIKHRGA GQILSICASTGDTSAAAALYGAYLAPAVKSAVLLPRGKVTPQQLSQPLGAGAAVLEIP GVFDDCMKVVEHLADNYQVALLNSKNAWRILGQESYAYELAQDLDWDMTGRLVLAPIG NAGNISAIMSGFMKLLDLGVITSLPKIIGVQSHHADPVFQYYQQSSPEKRVWRPVTVQ ASTAQAAMIGNPVSMPRVIELARRYDDLFGGGGFYVVQVSEQQIMDHMILANRHGHIV CTQGGESLAGLAQARAAGLVGASERAICDATAHQLKFAGFQQMYFENSFPAEFGVSPR PELVNMPQLVAALPEEQLPAPGRPLEPQAFRRFVEATSDAVAARLGLEKK" misc_feature 1525234..1526445 /locus_tag="Deba_1359" /note="threonine synthase; Validated; Region: PRK06260" /db_xref="CDD:180494" misc_feature 1525414..1526448 /locus_tag="Deba_1359" /note="Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants...; Region: Thr-synth_1; cd01563" /db_xref="CDD:107206" misc_feature order(1525474..1525476,1525489..1525494,1525561..1525563, 1525642..1525644,1525696..1525698,1525705..1525710, 1525732..1525734,1525783..1525803,1525807..1525815, 1525849..1525854,1525942..1525944,1526314..1526322, 1526326..1526331,1526434..1526436) /locus_tag="Deba_1359" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:107206" misc_feature order(1525579..1525581,1525675..1525677,1525987..1526001, 1526428..1526430) /locus_tag="Deba_1359" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107206" misc_feature 1525579..1525581 /locus_tag="Deba_1359" /note="catalytic residue [active]" /db_xref="CDD:107206" gene 1526664..1527086 /locus_tag="Deba_1360" /db_xref="GeneID:9493818" CDS 1526664..1527086 /locus_tag="Deba_1360" /note="InterPro IPR006683; KEGG: tye:THEYE_A0630 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: B5YJQ8 Putative uncharacterized protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003807322.1" /db_xref="GI:302342793" /db_xref="GeneID:9493818" /translation="MGVFDAPPLNDDGGCFACGRNNPVGLGMRVGFEDGAAVCRIVLP AHYQGWPGIAHGGVVATLLDEIMAHALIKSGSHGVTTGMEIAYKAPLMLEREVVVLGR VVELKSRLAVTHGEVRQADGDVLLAQATARFLLRKGGQ" misc_feature 1526739..1527068 /locus_tag="Deba_1360" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(1526823..1526825,1526901..1526903,1526922..1526933) /locus_tag="Deba_1360" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(1526826..1526828,1526832..1526834,1526841..1526843, 1526904..1526918,1526922..1526924) /locus_tag="Deba_1360" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(1526829..1526831,1526853..1526858,1526865..1526870, 1526901..1526903) /locus_tag="Deba_1360" /note="PHB binding site; other site" /db_xref="CDD:48038" gene 1527083..1527559 /locus_tag="Deba_1361" /db_xref="GeneID:9493819" CDS 1527083..1527559 /locus_tag="Deba_1361" /note="COGs: COG1576 conserved hypothetical protein; InterPro IPR003742; KEGG: rbi:RB2501_00091 hypothetical protein; PFAM: protein of unknown function DUF163; SPTR: A4CNG1 Putative uncharacterized protein; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: conserved hypothetical protein TIGR00246" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807323.1" /db_xref="GI:302342794" /db_xref="GeneID:9493819" /translation="MTGLALLTVGRPSAGYIADGLADYAGRMKGYGGLELLCVRAAKA VKSRPPAQLMDEEAGRILQKLDPRDMVWALDVAGRPWSSQRWADELAAARLDGRRRVV LLVGGHLGFGPAALARADRRVSLGAQTMAHELAALVVAEQIYRACAILAGAPYHRA" misc_feature 1527092..1527556 /locus_tag="Deba_1361" /note="Predicted SPOUT methyltransferase; Region: SPOUT_MTase; cl00679" /db_xref="CDD:186141" gene complement(1527564..1528100) /locus_tag="Deba_1362" /db_xref="GeneID:9493820" CDS complement(1527564..1528100) /locus_tag="Deba_1362" /note="InterPro IPR005561:IPR011991:IPR011006; KEGG: gau:GAU_0397 two-component response regulator; PFAM: ANTAR domain protein; SPTR: C0GKN6 Response regulator receiver and ANTAR domain protein; PFAM: ANTAR domain" /codon_start=1 /transl_table=11 /product="ANTAR domain protein with unknown sensor" /protein_id="YP_003807324.1" /db_xref="GI:302342795" /db_xref="GeneID:9493820" /translation="MNGGIRVVVVGREPGLVQHWAEALSADGCLVDACAGGFGLARRL CRQSDAEVAVLDGALPREPEKLKRLRQSVAVICLGPNAHQRCQADAMLPAPAAPELLR AVVRLIVGNRRRLAELALRAAALRREIEQHKSMERAKGRLMVAFGFSPAQAEQRLLGM AQRLEISPARAAELILGQ" misc_feature complement(1527573..1527716) /locus_tag="Deba_1362" /note="ANTAR domain; Region: ANTAR; pfam03861" /db_xref="CDD:146474" gene complement(1528129..1528794) /locus_tag="Deba_1363" /db_xref="GeneID:9493821" CDS complement(1528129..1528794) /locus_tag="Deba_1363" /note="COGs: COG3920 Signal transduction histidine kinase; InterPro IPR003594; KEGG: tro:trd_0267 probable two component sensor kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: B9KXS9 Probable two component sensor kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; HWE histidine kinase" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase" /protein_id="YP_003807325.1" /db_xref="GI:302342796" /db_xref="GeneID:9493821" /translation="MSQHDLDGPPPQWPPDCAAVARTVCHRVKNDLQMLMNLLVLAEA GAGTPQELSEAVQKRLSALGAVYTLIADEGRQPTAQALAREVARRVLARHGLAPAINT EGDPLPLSLRLCSPLALWLGEVIDNAVCHGRAADGAARLAFLAGRDDDETWLAVGDAG PGLPPRFDIEAHAGLGLRLAMAVAQRDLGGAMTLHSERGGVTARLCVPEREFRRLSTE AWR" misc_feature complement(1528153..1528719) /locus_tag="Deba_1363" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG3920" /db_xref="CDD:33706" gene complement(1528818..1529039) /locus_tag="Deba_1364" /db_xref="GeneID:9493822" CDS complement(1528818..1529039) /locus_tag="Deba_1364" /note="COGs: COG0694 thioredoxin-like protein and domains; InterPro IPR001075; KEGG: sat:SYN_02452 NifU-like domain-containing protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: C0GLY6 Nitrogen-fixing NifU domain protein; PFAM: NifU-like domain" /codon_start=1 /transl_table=11 /product="nitrogen-fixing NifU domain protein" /protein_id="YP_003807326.1" /db_xref="GI:302342797" /db_xref="GeneID:9493822" /translation="MKQRVQEALDKIRPALQKDGGDVKLVDVSDDGVVKVQLQGACHG CPMSQMTLKMGIEKVLKQNVPEVQKVESV" misc_feature complement(1528821..1529027) /locus_tag="Deba_1364" /note="NifU-like domain; Region: NifU; cl00484" /db_xref="CDD:153799" gene complement(1529065..1529961) /locus_tag="Deba_1365" /db_xref="GeneID:9493823" CDS complement(1529065..1529961) /locus_tag="Deba_1365" /EC_number="6.3.2.6" /note="COGs: COG0152 phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636:IPR018236:IPR013816; KEGG: glo:Glov_3047 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: B3E940 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole-succinocarboxamides ynthase" /protein_id="YP_003807327.1" /db_xref="GI:302342798" /db_xref="GeneID:9493823" /translation="MPEKPVIQTNLEGVPLVGRGKVRDIYDLGEHLLIVASDRVSAFD VIMPDPIPDKGKVLTQISLFWFEQMADLTANHLVAWEVADFPKQLHKFADQLAGRSML VKKARPLAIEAIVRGYITGTGWKDYQATGQVCGYKLPQGLQESQKLDEPLFTPSTKAD LGLHDENIDMQQAAKIVGDETARQVAQRALAIYGRARDYAAGRGIIIADTKFEFGFHD GQLILIDEVLTPDSSRFWPADDYAPGRGQKSFDKQFLRDYLESIGFAKKPPAPKLPAE VIEGTRARYLEALTRITGQGLK" misc_feature complement(1529080..1529916) /locus_tag="Deba_1365" /note="non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase; Region: SAICAR_synt_Sc; cd01414" /db_xref="CDD:133469" misc_feature complement(order(1529287..1529292,1529323..1529325, 1529488..1529490,1529638..1529640,1529644..1529646, 1529650..1529652,1529734..1529736,1529860..1529862, 1529866..1529868,1529884..1529889,1529893..1529895, 1529899..1529904,1529908..1529913)) /locus_tag="Deba_1365" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:133469" misc_feature complement(order(1529260..1529271,1529287..1529289, 1529323..1529325,1529329..1529337,1529467..1529469, 1529488..1529490,1529494..1529496,1529596..1529604, 1529614..1529616,1529620..1529622,1529626..1529628, 1529638..1529640,1529644..1529655,1529731..1529733, 1529830..1529832,1529866..1529868,1529887..1529889, 1529893..1529904,1529908..1529910)) /locus_tag="Deba_1365" /note="active site" /db_xref="CDD:133469" misc_feature complement(order(1529260..1529271,1529329..1529337, 1529467..1529469,1529494..1529496,1529596..1529604, 1529614..1529616,1529620..1529622,1529626..1529628, 1529830..1529832)) /locus_tag="Deba_1365" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133469" gene 1530089..1531024 /locus_tag="Deba_1366" /db_xref="GeneID:9493824" CDS 1530089..1531024 /locus_tag="Deba_1366" /note="COGs: COG0039 Malate/lactate dehydrogenase; InterProIPR001236:IPR001557:IPR016040:IPR015955:IPR 011275; KEGG: dal:Dalk_0818 malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; SPTR: B8FHV6 Malate dehydrogenase, NAD-dependent; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent" /codon_start=1 /transl_table=11 /product="malate dehydrogenase, NAD-dependent" /protein_id="YP_003807328.1" /db_xref="GI:302342799" /db_xref="GeneID:9493824" /translation="MVGKITVIGAGNVGATCAQRAAEKELADVVLVDVVEGMPQGKAL DLCEAAPVEKHDARLLGTNDYADTAGSDVIIVTAGIARKPGMSRDDLIKTNAGIVKAT VERAAPLSPEAVIIVVSNPLDAMCHVALKASGMPPRQVIGMAGVLDSARFRYFIAEAL DVSVENTHAFVLGGHGDTMVPLPRFSTVAGIPITELLPADKIAALCQRTAQGGAEIVS LLKTGSAYYAPASAAVEMAEAILKDKKKILPCAAYLQGQYGYNDLYIGVPVKLGKGGV LDVVEIKLTADEKAALDNSAGAVQKLVELLAELGY" misc_feature 1530098..1531006 /locus_tag="Deba_1366" /note="malate dehydrogenase; Reviewed; Region: PRK06223" /db_xref="CDD:180477" misc_feature 1530101..1531000 /locus_tag="Deba_1366" /note="L-lactate dehydrogenase-like malate dehydrogenase proteins; Region: LDH-like_MDH; cd01339" /db_xref="CDD:133424" misc_feature order(1530119..1530127,1530185..1530190,1530317..1530328, 1530380..1530382,1530440..1530442,1530446..1530448, 1530515..1530517,1530527..1530529,1530611..1530613) /locus_tag="Deba_1366" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133424" misc_feature order(1530131..1530133,1530146..1530148,1530155..1530157, 1530197..1530202,1530209..1530211,1530218..1530223, 1530227..1530232,1530242..1530244,1530248..1530256, 1530536..1530541,1530545..1530547,1530551..1530553, 1530743..1530745,1530764..1530772,1530779..1530784, 1530791..1530793) /locus_tag="Deba_1366" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133424" misc_feature order(1530248..1530250,1530254..1530256,1530569..1530571, 1530584..1530586,1530590..1530592,1530596..1530598, 1530647..1530649,1530653..1530661,1530812..1530814, 1530818..1530829,1530905..1530907,1530932..1530934) /locus_tag="Deba_1366" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:133424" misc_feature order(1530350..1530352,1530446..1530448,1530539..1530541, 1530611..1530613,1530725..1530727,1530761..1530763) /locus_tag="Deba_1366" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133424" gene complement(1531068..1532105) /locus_tag="Deba_1367" /db_xref="GeneID:9493825" CDS complement(1531068..1532105) /locus_tag="Deba_1367" /note="COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667; KEGG: dol:Dole_0370 phosphoesterase domain-containing protein; PFAM: phosphoesterase RecJ domain protein; SPTR: A8ZT16 phosphoesterase RecJ domain protein; PFAM: DHH family" /codon_start=1 /transl_table=11 /product="phosphoesterase RecJ domain protein" /protein_id="YP_003807329.1" /db_xref="GI:302342800" /db_xref="GeneID:9493825" /translation="MSAPKNSSAKPRGLSARVKKLLGMFNGDDHVLILIAADPDALGS ALAFKRLLWRRVAGVTIASISEISRPDNQAMIRLLQIPMEPIEKIDPRAFSKKVMVDS QPHHSPRFPEPPYDVIIDHHPPIDKQQAEYEDIRPTYGATSSILTEYLQGARINLSQR LATALLYGIKTDTDSFGRPALQEDIKAFQFLYAKASQSTLRKIEFSEMRIEDLQPLQD ALKSFVMRGHRLFVHLGQVASADNLVQIADFFLRVATVDACAVSGVVGQKVVVIFRNA APRLNAGKMAQKAFGRLGAAGGHRAMARAEVPLTAIMSQFPGLDHDKLGLRIRQMIQF PNAQKRTPRPE" misc_feature complement(1531599..1532030) /locus_tag="Deba_1367" /note="DHH family; Region: DHH; pfam01368" /db_xref="CDD:189957" gene 1532341..1533849 /locus_tag="Deba_1368" /db_xref="GeneID:9493826" CDS 1532341..1533849 /locus_tag="Deba_1368" /note="COGs: COG5016 pyruvate/oxaloacetate carboxyltransferase; InterPro IPR000891:IPR003379:IPR013785; KEGG: dat:HRM2_31800 Pcb; PFAM: carboxylase; pyruvate carboxyltransferase; SPTR: C0QLF7 Pcb; PFAM: HMGL-like; Conserved carboxylase domain" /codon_start=1 /transl_table=11 /product="carboxylase" /protein_id="YP_003807330.1" /db_xref="GI:302342801" /db_xref="GeneID:9493826" /translation="MSDTLDWGGNPTPLKVQDLTLRDGTQSLFATRMRTEDMIPIAEQ MDECGFWAMEVWGGATFDAMSRFLGEDPWERPRTLRKYAKKTPFAMLLRGQNLVGYRN YADDVARKFVDLSCEAGVNVFRTFDALNDYRNFEVVVERIKANGQHFQGTICYSLTER FMGGEVFNLDYYLDKARQLVAMEADSICVKDMAGILAPYDAYTLVRALKQAVDVPIHL HSHYTSGMASMTMLKAAEAGVDIIDTCLAPFALRTSHPAIEPILVTLENTPRDTGLSL RKLLAINEHLEKIAPKYRDFMSSTTMAQIDTGVLVHQVPGGMISNLVNQLKENKALHR LPEVYKEVAVTRKELGTPPLVTPTSQIVGVQAVLNVLFGKYKLVTNETKGLVWGLYGK TPTPVDPEVRAKVLKGYARGTEPFDGRPADVLEPEMDQAKERVKDIPGADDFDVMTSA IYDVTGTQFVKIKHGLLPMPANMKGKSLDDIAEEDKLMAECAKEVKQKLAKK" misc_feature 1532374..1533750 /locus_tag="Deba_1368" /note="Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]; Region: COG5016" /db_xref="CDD:34621" misc_feature 1532386..1533228 /locus_tag="Deba_1368" /note="Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain; Region: DRE_TIM_PC_TC_5S; cd07937" /db_xref="CDD:163675" misc_feature order(1532404..1532409,1532416..1532418,1532500..1532502, 1532512..1532514,1532611..1532613,1532617..1532619, 1532800..1532802,1532908..1532910,1532995..1532997, 1533001..1533003,1533103..1533105) /locus_tag="Deba_1368" /note="active site" /db_xref="CDD:163675" misc_feature order(1532404..1532409,1532500..1532502) /locus_tag="Deba_1368" /note="catalytic residues [active]" /db_xref="CDD:163675" misc_feature order(1532407..1532409,1532908..1532910,1532995..1532997, 1533001..1533003) /locus_tag="Deba_1368" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163675" misc_feature order(1532929..1532931,1532935..1532937,1533010..1533012, 1533016..1533018,1533022..1533024,1533034..1533039, 1533079..1533084,1533088..1533090,1533118..1533120, 1533136..1533138,1533178..1533180) /locus_tag="Deba_1368" /note="homodimer binding site [polypeptide binding]; other site" /db_xref="CDD:163675" misc_feature 1533265..>1533723 /locus_tag="Deba_1368" /note="Conserved carboxylase domain; Region: PYC_OADA; pfam02436" /db_xref="CDD:145532" gene complement(1533976..1534353) /locus_tag="Deba_1369" /db_xref="GeneID:9493827" CDS complement(1533976..1534353) /locus_tag="Deba_1369" /note="InterPro IPR012335:IPR012336; KEGG: sfu:Sfum_3604 thioredoxin domain-containing protein; SPTR: A0LPC2 thioredoxin domain; PFAM: thioredoxin" /codon_start=1 /transl_table=11 /product="thioredoxin domain-containing protein" /protein_id="YP_003807331.1" /db_xref="GI:302342802" /db_xref="GeneID:9493827" /translation="MIFARLVVIALLALLTSNAAEATPKVQYGAEPVPGMVTLIQAGY ERCGFCTVMEGSIEYVAEAFKKNLAVRYVDVLHDVAFRKKYEVDAAPAQLIFGADGKL LTRHIGFCTKSELLEMLGKVGVR" misc_feature complement(1533997..>1534215) /locus_tag="Deba_1369" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature complement(order(1534204..1534206,1534213..1534215)) /locus_tag="Deba_1369" /note="catalytic residues [active]" /db_xref="CDD:48496" gene complement(1534478..1535629) /locus_tag="Deba_1370" /db_xref="GeneID:9493828" CDS complement(1534478..1535629) /locus_tag="Deba_1370" /note="COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017:IPR009051; KEGG: dol:Dole_0768 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A8ZVB7 Putative uncharacterized protein; PFAM: Cysteine-rich domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807332.1" /db_xref="GI:302342803" /db_xref="GeneID:9493828" /translation="MEYAEILHRCFRCGYCKLPSDYSDLSCPSYLKYRFETFSPGGRM WLLRGWLDGQLQTSPRLQEIIYSCAACGNCVEHCNFPKFKDHILDAFIAARGLMVEEG QVPPTVRDYFKAIQQSGNPYKAPQSARGNWAKGLDLAAYAGQEYLFYAGDVASYDERA QMMARAAVTALKERGVDFGVLGASELADGNETRVLGERMLFEVLAQANIEQWQGLGVQ KIVTVDPHAYHAIRNHYPALGGQFEVFHYSQLLAPALKAQPPAGPGRAVRVAFHDPCY LGRHNGEFKAPRKALQATPGVELIELPRARKNALCCGGGGGNFFTDIVGAGPGAPARE RVREAVASGAEVLAVACPNCLKMLSDAVKAENLDERLAVKDLAELALGR" misc_feature complement(1534484..1535629) /locus_tag="Deba_1370" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" gene complement(1535629..1537008) /locus_tag="Deba_1371" /db_xref="GeneID:9493829" CDS complement(1535629..1537008) /locus_tag="Deba_1371" /note="COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR006094:IPR004113:IPR016166:IPR016167:IPR 016168:IPR016164; KEGG: dol:Dole_0769 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase domain protein; SPTR: A8ZVB8 FAD linked oxidase domain protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain" /codon_start=1 /transl_table=11 /product="FAD linked oxidase domain protein" /protein_id="YP_003807333.1" /db_xref="GI:302342804" /db_xref="GeneID:9493829" /translation="MRQFIEQLKRIVGEAFVSDAAEERFIYSRDQGTMPPSDPDVVAM PADAAQIQAIVRLAGQHKVPVVPMGGGLVLSGLTRPLKGGLVLDLKRMNRVLEVNALC RYAVVEAGCSEGMLQAYLKKHHPDLKHSMPDAPPIATVGGNMLIHGSGHMSAWAGYHT DQLGGLEVVLPDGELARLGTCAVSPEWFGRAPLPDLAGLFLGWAGATGVVTKLAIKLF PRRPFNDVRIFVCEDAELGAQVINKLTGVGVIEDMTAWMTPVPAWANGLINFNAVYSA NSKEELTWKRELLSAAVGDLIKQRVGGFMMLPPPMKKNFMEEPASNLAKFADVKKGGG FEYVGAIMPIDRFAQAYRTGLEVAERHDVAYSLGCRVIGQGHAMMFFYAYAFNRADQA DIARAQAALEETNLAALDMGGIPWKAEAPAQKQIMARMDPGALALMGRVRAMLDPAGI MNPGNWEAM" misc_feature complement(1535647..1536990) /locus_tag="Deba_1371" /note="FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277" /db_xref="CDD:30625" misc_feature complement(1536472..1536861) /locus_tag="Deba_1371" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene complement(1537015..1538055) /locus_tag="Deba_1372" /db_xref="GeneID:9493830" CDS complement(1537015..1538055) /locus_tag="Deba_1372" /note="COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017:IPR017900; KEGG: dol:Dole_0770 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A8ZVB9 Putative uncharacterized protein; PFAM: Cysteine-rich domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807334.1" /db_xref="GI:302342805" /db_xref="GeneID:9493830" /translation="MYDLNYDPAICAACPTIDCLTRCQYMDFDLDSAKEQRRLILAGQ KAKALEDCLTCYACEQRCPNGNHPFYLMVERQEQLGLWPAPLPLIHQQEAMMAPRRVR EPGPLHDPVINMCFFPMLTRMVRGDLFKGASYFVGSDIFCNVMWLHTAGNSTIRQRLP KVIETIWKEHLEPNGITEIVCYHDECYGTYTQLAPAFNIDVPWKSIHLYEYLLERLTG LKDKIKPLGLTVAYQQPCSSRLSPQMQPLVDDIFALIGAQRPQRQYDRDNALCCGGVP RLHQRDQLADDLLRRNIDDMKAVGAQFCVFNCPACLMTMGHDVFEAGVIPILMSELCQ MALGEQMLVMGG" misc_feature complement(1537039..1538025) /locus_tag="Deba_1372" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" misc_feature complement(1537108..1537257) /locus_tag="Deba_1372" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene complement(1538214..1538732) /locus_tag="Deba_1373" /db_xref="GeneID:9493831" CDS complement(1538214..1538732) /locus_tag="Deba_1373" /note="KEGG: dps:DP0753 hypothetical protein; SPTR: C8QY26 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807335.1" /db_xref="GI:302342806" /db_xref="GeneID:9493831" /translation="MSQQRDLITGRLLPYCDDEYVRQAVEKLLLELGYERGEVEVGFG RLVEHRGRTLCVSADLLVKHAGRPAMIIRCARGSLVSREQEALATARLLSDDAWLPLA VVTNGQDAELLDVATGKVVDTGLAAIPGPERLGRLVAEATPRRSTPAQREKALRIHDA YGFIQCPGQCTV" gene 1538772..1539503 /locus_tag="Deba_1374" /db_xref="GeneID:9493832" CDS 1538772..1539503 /locus_tag="Deba_1374" /note="InterPro IPR004843:IPR011152; KEGG: sfu:Sfum_2718 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: A0LLU4 Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_003807336.1" /db_xref="GI:302342807" /db_xref="GeneID:9493832" /translation="MLHMKLAIVSDIHGNLEAFQAVLADIADQGVEERFCLGDLVGYG PDPLAVIDLARREGFACVMGNHDQAVVEPASLSWFNPLARRSLELIANLIDEPARRFL AGLPMFIVKHGCRFVHGFPPDSARTYFFEVTGPRLRRALEGLAEDICFVGHTHELEIA SLVDGWVTPCGLIQGAYDLGRGKHIINIGSVGQPRDGDRSAKYVLWDVERRRLEVRFV AYDPAPTVAKILALGLPEHHASRLL" misc_feature 1538781..1539239 /locus_tag="Deba_1374" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature 1538793..>1539140 /locus_tag="Deba_1374" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" misc_feature order(1538802..1538804,1538808..1538810,1538886..1538888, 1538964..1538969,1539123..1539125) /locus_tag="Deba_1374" /note="active site" /db_xref="CDD:163614" misc_feature order(1538802..1538804,1538808..1538810,1538886..1538888, 1538964..1538966,1539123..1539125) /locus_tag="Deba_1374" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163614" gene 1539517..1540860 /locus_tag="Deba_1375" /db_xref="GeneID:9493833" CDS 1539517..1540860 /locus_tag="Deba_1375" /note="COGs: COG0515 serine/threonine protein kinase; InterProIPR017442:IPR011460:IPR002052:IPR017441:IPR 008271:IPR000719:IPR020635:IPR002290:IPR011009; KEGG: dde:Dde_3468 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; protein of unknown function DUF1566; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: Q30VN5 serine/threonine protein kinase; PFAM: Protein kinase domain; Protein of unknown function (DUF1566)" /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase" /protein_id="YP_003807337.1" /db_xref="GI:302342808" /db_xref="GeneID:9493833" /translation="MKLIGKYQVLGLLGRGGMGVVHKVAAPGGWPLLALKLLRPSDLL ARLWGRAELRRRFAREARLLAGLRHPNLVAVLDMDLVANPPYYVMEYLCDNLGQLIGE GYDPQTPSRVLRPERALALTRQALAGLAALHRAGVVHRDFKPYNLLLDDQGRARLADL GLSRLRGERRPGPANLKVGSPHYAAPEQVADPESAGPAADLYAVAVCLHRLVTGLLPG ALPASALAPGLDSAWDDFFGRALAADPARRPASAGRMIDDLSALGRRWAVRRGELCAL AQPWPGVAQREASPAPLPARPAKFGPKQARQRLGLDELWRPLARPARLAAIDDRLARD LDRGLIWQRGGSGRPMDWPSAQAWAAELAQSGFAGRHDWRLPTAAEAATLIGPPPAQG GLCLESIFDQAQSRLWTSDRASFRAAWMVGLRTGFVGRQDFTCRNHVRAVGGPIL" misc_feature <1539721..1540149 /locus_tag="Deba_1375" /note="Catalytic domain of Protein Kinases; Region: PKc; cd00180" /db_xref="CDD:173623" misc_feature order(1539733..1539735,1539781..1539789,1539793..1539795, 1539799..1539801,1539805..1539807,1539937..1539939, 1539943..1539945,1539949..1539954,1539958..1539960, 1539991..1539993,1540000..1540002,1540051..1540062) /locus_tag="Deba_1375" /note="active site" /db_xref="CDD:173623" misc_feature order(1539733..1539735,1539781..1539789,1539793..1539795, 1539799..1539801,1539937..1539939,1539943..1539945, 1539949..1539954,1539958..1539960,1539991..1539993) /locus_tag="Deba_1375" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature order(1539799..1539801,1539805..1539807,1539937..1539939, 1539943..1539945,1539949..1539951,1540000..1540002, 1540051..1540062) /locus_tag="Deba_1375" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature order(1539988..1540008,1540051..1540062) /locus_tag="Deba_1375" /note="activation loop (A-loop); other site" /db_xref="CDD:173623" misc_feature 1540528..1540671 /locus_tag="Deba_1375" /note="Protein of unknown function (DUF1566); Region: DUF1566; pfam07603" /db_xref="CDD:148943" gene complement(1540855..1541481) /locus_tag="Deba_1376" /db_xref="GeneID:9493834" CDS complement(1540855..1541481) /locus_tag="Deba_1376" /note="COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR008254:IPR010089; KEGG: eba:ebA2303 TrpR binding protein WrbA; PFAM: flavodoxin/nitric oxide synthase; SPTR: Q5P5L5 Flavoprotein wrbA; TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; TIGRFAM: NAD(P)H:quinone oxidoreductase, type IV" /codon_start=1 /transl_table=11 /product="flavoprotein WrbA" /protein_id="YP_003807338.1" /db_xref="GI:302342809" /db_xref="GeneID:9493834" /translation="MRVHIVFYSMYGHVYKLAEAVAEGARREPGAEVALYQVPELVPE AALAQSGADKTRRAFAHVPVAEPAELAQADAIIFGTPTRFGMMCSQMRNFLDRTSQLW VRGELVGKLGSVFASTGTQHGGQESTILSFHTTLLHHGMILVGVPFTEPGLLEMGEIS GGTPYGATTIAANDGSRQPSKNELSIARFQGRHVARIAGQLARGRGGL" misc_feature complement(1540873..1541481) /locus_tag="Deba_1376" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 1541605..1542381 /locus_tag="Deba_1377" /db_xref="GeneID:9493835" CDS 1541605..1542381 /locus_tag="Deba_1377" /note="KEGG: mvu:Metvu_0900 hypothetical protein; SPTR: C9RGQ6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807339.1" /db_xref="GI:302342810" /db_xref="GeneID:9493835" /translation="MEKPHSDLDWIEKLLIAAGLVTLSTFLYVAHYFLFDSAHGPAYY ADKVFSHIAFLPIHALVLGVIIDGMITFRERQGRKRRLNMFLGIFFRQLGADILAMAS GLCQNRDELDAITVVHQQWGARDFRRARQGLAAFRPRMAADEKQVLALLDYLRQREGD ILEMTRNPLVLEFEDLYHGLISLFHLIEEIHYRNSDQAFSPGELTHLAKDVGKSLKQL SHLWLIYLEHLKAEHPVLFHCQVGVCSTIGTMLLEDRYDD" gene complement(1542453..1542545) /locus_tag="Deba_1378" /db_xref="GeneID:9493836" CDS complement(1542453..1542545) /locus_tag="Deba_1378" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807340.1" /db_xref="GI:302342811" /db_xref="GeneID:9493836" /translation="MFDVILGALGAAFFWSCVTSLVYFGTKNDR" gene complement(1542640..1543851) /locus_tag="Deba_1379" /db_xref="GeneID:9493837" CDS complement(1542640..1543851) /locus_tag="Deba_1379" /EC_number="2.7.2.1" /note="COGs: COG0282 Acetate kinase; InterPro IPR000890:IPR004372; KEGG: dal:Dalk_3906 acetate kinase; PFAM: acetate and butyrate kinase; SPTR: B8FJC3 Acetate kinase; TIGRFAM: acetate kinase; PFAM: Acetokinase family; TIGRFAM: acetate kinase" /codon_start=1 /transl_table=11 /product="acetate kinase" /protein_id="YP_003807341.1" /db_xref="GI:302342812" /db_xref="GeneID:9493837" /translation="MRILVINTGSSSIKYQLFDMERAVILASGLAERIGEEQSSLRHK AFIDGQERLGQYDRAIADHHQGLDLIVELLTAPGVGVITHKSDIDAVGHRVVHGGERF KAPCLIDEAVIAAIEENAALAPLHNPPNLVGVRVARQIFPQAAQVAVFDTAFHQTIPA EAFLYALPYELYQKHRVRRYGFHGTSHWYVTEQTALFLGRPVEELDIITVHLGNGASM AAVRGGRCIDTTMGLTPLEGLVMGTRSGDVDPALPFFLADQLGLGLKDIDRLLNKESG LKGLCGHNDMRQVIEASHNGDEKAATALAVYAYRIKKYIGAYLAALGRLDALVFTAGI GENAPQVRELCCRGLEGLGIAIDPARNLAPNHGPRLISPEGALVQVLVTPTNEELKIA QETRKLLNGGR" misc_feature complement(1542646..1543851) /locus_tag="Deba_1379" /note="Acetokinase family; Region: Acetate_kinase; cl01029" /db_xref="CDD:194013" gene complement(1543851..1545977) /locus_tag="Deba_1380" /db_xref="GeneID:9493838" CDS complement(1543851..1545977) /locus_tag="Deba_1380" /note="COGs: COG0280 phosphotransacetylase; InterProIPR010766:IPR002505:IPR002114:IPR016475:IPR 004614; KEGG: dvm:DvMF_1864 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; SPTR: B8DMG4 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: DRTGG domain; phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type" /codon_start=1 /transl_table=11 /product="phosphate acetyltransferase" /protein_id="YP_003807342.1" /db_xref="GI:302342813" /db_xref="GeneID:9493838" /translation="MANSLYITSTEAYSGKSVICLGVMEMLMRMIDKVAFFRPIIQSN GCAADPCVIDHDINLIAEHFKLGIPIHDMYAFTAAESEMMWSMGRRSELVEQILAKNS KLEENFDFVLYEGTDFVHSTSAFEFDINSELAKLFQAPVLLVANAHNKSVDETARAVE LSFDSLRTRGCEVVATIVNRVRPGEQDVIIKTIKQMRFAKNQLVYAVPNRRTLSLPTV GEVAKSLGAKVLYGHEHLNRNVHSFTVAAMQMHNFLQRINHGTLVITSGDRADVLVAS LASLSSQSMPKIAGIILTGGLLPEEPIRELITGFSRMVPVLSVAENTYPTAIKVEAVC AKLSPHDDRKIARALAVFEKSVDDEALAGKIVTSETSMMTPKMFEYRLLQRARKHKQH IVLPEGEDERILRAAEILLSRDVVDITLLGNESRVRDRIREFSLRLEDVPVIDPQRSD KLEDYAQQFYELRKHKGITPENARDAVSDASYFGTMMVHVGDADGMVSGAVHTTAATV RPAFEIIKTKPGTTVVSSVFFMCLAERVLVYGDCAVNPNPTAVQLSEIALDSALTAKT FGIEPRVAMLSYSTGDSGAGLDVDKVREATAMAKEKAVARGLDLKIEGPIQYDAAVDS AVAQAKMPGSEVAGHATVFIFPDLNTGNNTYKAVQRSAKALAIGPVLQGLNKPVNDLS RGCTISDVLNTIAITAIQAQAVKGLK" misc_feature complement(1543902..1545977) /locus_tag="Deba_1380" /note="phosphate acetyltransferase; Reviewed; Region: PRK05632" /db_xref="CDD:180175" misc_feature complement(1545354..1545977) /locus_tag="Deba_1380" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature complement(1544985..1545320) /locus_tag="Deba_1380" /note="DRTGG domain; Region: DRTGG; cl12147" /db_xref="CDD:196357" misc_feature complement(1543902..1544852) /locus_tag="Deba_1380" /note="Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl00390" /db_xref="CDD:193798" gene 1546340..1547509 /locus_tag="Deba_1381" /db_xref="GeneID:9493839" CDS 1546340..1547509 /locus_tag="Deba_1381" /note="COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR004839:IPR004838:IPR015421:IPR015422:IPR 015424; KEGG: sfu:Sfum_1219 aminotransferase, class I and II; PFAM: aminotransferase class I and II; SPTR: A0LHK9 Aminotransferase; PFAM: Aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="aminotransferase class I and II" /protein_id="YP_003807343.1" /db_xref="GI:302342814" /db_xref="GeneID:9493839" /translation="MQEFRRMKRLPPYVFAVVTELKMAARRRGEDIIDLGMGNPDLPT PDHIVEKLVEAARKGANHRYSASKGITKLRHAIAAWYKRRYDVDIDPETEAVATIGVK EGLSHLVLATISPGDVVLAPSPTYPIHPYSVVIAGGDLRNVPILPDRDFFEDLQTALR QTWPQPKMLITSFPHNPTTVCVDLAFMTKLVEFCKENQIWLVHDFAYADLTFDGYEAP SVLQVPGAKDIAVEFFSASKSYSMAGWRLGFCVGNREMVNALTRIKSYLDYGVFQPIQ IAGIIALNEDQECVKQIVEVYRSRRDVLINGLERIGWHVPSPKGTMFVWAKIPEPYRA AGSVEFCKKLVEEAKVAVSPGIGFGEYGDEYVRFALVENEQRINQAIRGLRKFLC" misc_feature 1546352..1547494 /locus_tag="Deba_1381" /note="aspartate aminotransferase; Provisional; Region: PRK07681" /db_xref="CDD:181081" misc_feature 1546436..1547497 /locus_tag="Deba_1381" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(1546637..1546645,1546715..1546717,1546865..1546867, 1546958..1546960,1547042..1547044,1547048..1547053, 1547075..1547077) /locus_tag="Deba_1381" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(1546646..1546648,1546745..1546747,1546937..1546939, 1547069..1547077,1547162..1547164,1547171..1547173) /locus_tag="Deba_1381" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 1547051..1547053 /locus_tag="Deba_1381" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 1547536..1548843 /locus_tag="Deba_1382" /db_xref="GeneID:9493840" CDS 1547536..1548843 /locus_tag="Deba_1382" /EC_number="1.1.1.3" /note="COGs: COG0460 Homoserine dehydrogenase; InterProIPR005106:IPR001342:IPR002912:IPR019811:IPR 016204:IPR016040; KEGG: gsu:GSU1693 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; SPTR: Q74CI0 Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; ACT domain" /codon_start=1 /transl_table=11 /product="homoserine dehydrogenase" /protein_id="YP_003807344.1" /db_xref="GI:302342815" /db_xref="GeneID:9493840" /translation="MTRKRINVGLIGLGTVGGGVARLLLEQQRRLSDYLGAELTLARA ADRDPALAQGLDLPAGVLVADGAAVVADPQVDIVVELIGGLEPARAFVLAAIAGGKHV ATANKALLAHHGREIFLAARQKGVGVAFEASVGGGIPLIRSLREGLAANDISHCLGIL NGTCNFILSKMTAEGAAYADVLAQAQQEGYAEADPTFDVAGTDTAHKLAIIAALVTGR QPELNDISTEGITKIAPLDIQLAGEFGFKVKLLAVLRKVGQAVELRVHPTLVPLGHPM ASVDGPFNALFVEGDWVGEVLLYGRGAGRRPTASAVVGDVLDLARDVLCGCPGRVPPL GSAAEPEGPLALAPLDQTVCKYYFRFAAQDKPGVLAAISAVLAEHRISIEAVIQKGRE EAGPVPIVMLTHEANEAAVQRALARINALPFIAEDTMFIRVAG" misc_feature 1547611..1548834 /locus_tag="Deba_1382" /note="homoserine dehydrogenase; Provisional; Region: PRK06349" /db_xref="CDD:180538" misc_feature <1547758..1547928 /locus_tag="Deba_1382" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1547950..1548486 /locus_tag="Deba_1382" /note="Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742" /db_xref="CDD:189696" misc_feature 1548601..1548834 /locus_tag="Deba_1382" /note="ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains; Region: ACT_HSDH-Hom; cd04881" /db_xref="CDD:153153" gene 1548870..1550066 /locus_tag="Deba_1383" /db_xref="GeneID:9493841" CDS 1548870..1550066 /locus_tag="Deba_1383" /EC_number="5.4.2.1" /note="COGs: COG3635 phosphoglycerate mutase AP superfamily; InterProIPR019304:IPR006124:IPR004456:IPR013371:IPR 017850; KEGG: pca:Pcar_1514 cofactor-independent phosphoglycerate mutase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein; PRIAM: phosphoglycerate mutase; SPTR: Q3A4E7 phosphoglycerate mutase; TIGRFAM: proposed homoserine kinase; phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme superfamily; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form; proposed homoserine kinase" /codon_start=1 /transl_table=11 /product="proposed homoserine kinase" /protein_id="YP_003807345.1" /db_xref="GI:302342816" /db_xref="GeneID:9493841" /translation="MKYIVLVGDGMGDLPVDELGGQTVLQAAHTPNMDRLAASGLLGL TKTIPEGMEPGSDVANMSLMGYDPARYHTGRSPIEAASMGVDLGPEEIAFRCNLVTLD YGPPALMIDYSAGHIDSETAAGLVGALQRALGRDGLTFHPGVSYRHLLVWRGGPLDAA TVPPHDRTGQRVDDALDGPGPARAVAELIRASWPVLRDHPINAERLAKGLRPANSIWL WGQGTKPALPTVGQRFGLSGRTISAVDLVKGLGVLAGLPPVDVPGATGWLDTNYAGKI AAALAALAEGDMAFVHVEAPDEAGHGGDYRKKLQAIEDFDAKVVGPIVKGAADLGRYR VLLMPDHYTPLCTKTHGRQAVPFVIWDSARAAAGGAGFNEPAAAATGLVVERAHELLP MLVEVK" misc_feature 1548870..1550060 /locus_tag="Deba_1383" /note="cofactor-independent phosphoglycerate mutase; Provisional; Region: PRK04200" /db_xref="CDD:179781" misc_feature 1548870..1550054 /locus_tag="Deba_1383" /note="Sulfatase; Region: Sulfatase; cl10460" /db_xref="CDD:195965" gene 1550063..1550473 /locus_tag="Deba_1384" /db_xref="GeneID:9493842" CDS 1550063..1550473 /locus_tag="Deba_1384" /note="COGs: COG0824 thioesterase; InterPro IPR006683:IPR006684; KEGG: ade:Adeh_1639 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; SPTR: Q2IID3 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; TIGRFAM: conserved hypothetical protein TIGR00051; tol-pal system-associated acyl-CoA thioesterase" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003807346.1" /db_xref="GI:302342817" /db_xref="GeneID:9493842" /translation="MIHRWRMRPLFGDTDSMGVVYHGNYLRYFERGRAELMRAAGRAY TELMDLGLHLPVSEAWVKYHRPARYDDDLVIETSVDWIKKASLRFEYKIVRAAGDDEV LLVSGATVHACVDGQGRVRPLPQWLTGLTKRSDE" misc_feature 1550069..1550407 /locus_tag="Deba_1384" /note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active...; Region: 4HBT; cd00586" /db_xref="CDD:48031" misc_feature order(1550150..1550152,1550222..1550224,1550228..1550230, 1550309..1550320) /locus_tag="Deba_1384" /note="active site" /db_xref="CDD:48031" gene 1550647..1553331 /locus_tag="Deba_1385" /db_xref="GeneID:9493843" CDS 1550647..1553331 /locus_tag="Deba_1385" /EC_number="2.7.9.1" /note="COGs: COG0574 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterProIPR002192:IPR008279:IPR000121:IPR018274:IPR 010121:IPR013815:IPR013816:IPR015813; KEGG: gsu:GSU0580 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; PRIAM: pyruvate, phosphate dikinase; SPTR: Q74FM6 pyruvate phosphate dikinase; TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase" /codon_start=1 /transl_table=11 /product="pyruvate, phosphate dikinase" /protein_id="YP_003807347.1" /db_xref="GI:302342818" /db_xref="GeneID:9493843" /translation="MADHKYVYFFGAGKAEGAADMKNLLGGKGANIAEMTNIGIPVPS GFTITTEVCTYFYDHGRTYPAELKAQVAEALAKVEAVMGAKFGDPTNPLLVSVRSGAR VSMPGMMDTVLNVGLNDETVKGVIAKTGNERFAYDAYRRFVNMYSDVVLGVKAAHEKE EDPFEVILEKKKHARGVKLDTELSAQDLKELVAEFKAMVNERLGKPFPEAPMDQLWGG ISAVFESWNIPRAKSYRQIHGFPEDWGTAVNVQSMVFGNMGDDSATGVAFTRDPSTGE NYFYGEYLTNAQGEDVVAGIRTPQPINRTKGAPEGMRTLDEEMPELYKQLAGIRETLE KHYRDMQDIEFTIQQGRLWMLQTRNGKRTPAAAVKIAVDMVGEGLIDKQTAIKRVEPE QINHLLHPMLDPKAKRVKIAAGLPASPGAAVGQVVFSASDAEAWAADGKKIILVRVET SPDDIRGMNVAEGILTSRGGMTSHAAVVARGMGTPCVAGCSEIAVDYANEQFTAGGVV VKQGDWISLDGSKGEVYQGQVAKVEPKLTGDFAAFMDWADEIRTLGVRTNADTPHDAS VARNFGAEGIGLCRTEHMFFEGERIKAVREMILSDDIETRQKALAKLLPMQREDFVGI FRAMDGLPVTIRTLDPPLHEFLPHVDNDKDIDGLAADMGLSAAQIKAKVESLAEMNPM LGTRGCRLGLSFPEITEMQARAIFEAACQVAKEGVKVIPEVMIPLVGHVNELKLQKAI VLRVAEEVMAAAGVKVDYLVGTMIELPRAALTADQIAQEAQFFSFGTNDLTQTTFGLS RDDTGKMLAEYVASGILPKDPFVSIDEEGVGQLVRIGVEKGRSVNAKLKVGICGEHGG DPASVDFCHRVGMNYVSCSPYRVPIARLAAAQAALRNN" misc_feature 1550659..1553289 /locus_tag="Deba_1385" /note="pyruvate phosphate dikinase; Provisional; Region: PRK09279" /db_xref="CDD:181751" misc_feature 1550701..1551777 /locus_tag="Deba_1385" /note="Pyruvate phosphate dikinase, PEP/pyruvate binding domain; Region: PPDK_N; pfam01326" /db_xref="CDD:189943" misc_feature 1551961..1552209 /locus_tag="Deba_1385" /note="PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; cl01586" /db_xref="CDD:194171" misc_feature 1552246..1553289 /locus_tag="Deba_1385" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene 1553519..1554505 /locus_tag="Deba_1386" /db_xref="GeneID:9493844" CDS 1553519..1554505 /locus_tag="Deba_1386" /EC_number="2.3.1.41" /note="COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterProIPR013751:IPR013747:IPR016038:IPR004655:IPR 016039; KEGG: tte:TTE1475 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: A1HN89 3-oxoacyl-(Acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) synthase III" /protein_id="YP_003807348.1" /db_xref="GI:302342819" /db_xref="GeneID:9493844" /translation="MSGIRLIGSGYYLPEKILSNFDLEKSLDTTDEWIVKRTGIKERR IARADQATSDLALEASRMAMQKAGVGPDDLDMIIVATVTPDMCCPSAANFLQAKLRAM RAVSFDVTAACSGFCFVLDVARQYLLTGAAKTVLVVGAEVMSRVQDWTDRANCVLWGD GSGAVVLQAGDGAPRLVDTYVGADGFNGQDLQVPGGGSLTTPISHESVDAKKHTLRLF NAANSMRIAVQQFVHSVDVILGRNGLAYQDVAHFVPHQANIRMIQQVAKRMDVDMERF VITIHKYANISAASSAIALAEAIDQGRIKPGDVVCLLVFGGGLTWGSALFQF" misc_feature 1553519..1554502 /locus_tag="Deba_1386" /note="3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352" /db_xref="CDD:181792" misc_feature 1553525..1554496 /locus_tag="Deba_1386" /note="Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830" /db_xref="CDD:29417" misc_feature order(1553762..1553764,1553768..1553770,1553795..1553797, 1553804..1553806,1553828..1553848,1553870..1553872, 1553879..1553884,1553891..1553896,1553951..1553953, 1554059..1554076,1554092..1554097,1554470..1554472) /locus_tag="Deba_1386" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29417" misc_feature order(1553855..1553857,1554281..1554283,1554371..1554373) /locus_tag="Deba_1386" /note="active site" /db_xref="CDD:29417" misc_feature 1554290..1554292 /locus_tag="Deba_1386" /note="CoA binding pocket [chemical binding]; other site" /db_xref="CDD:29417" gene 1554531..1555124 /locus_tag="Deba_1387" /db_xref="GeneID:9493845" CDS 1554531..1555124 /locus_tag="Deba_1387" /note="KEGG: pag:PLES_29051 PvdE; SPTR: B7V8R8 PvdE" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807349.1" /db_xref="GI:302342820" /db_xref="GeneID:9493845" /translation="MAMLAVVVAAVAALIMAGPAPARAQLDDPLVIHDGVDCFNWPGA PQRLCAQWRLIAAAKGGVKWTMFVSGVGMQEHLFAQEQSFSAAEKAGLIAALRKGLRW SRTAAREKIDVVRRIGVVGGRLTVDFLSTGGGRECVVRLQMQDWLKDKPVPMFVAYGR QQDARHGLGALIKALEGSEAAHADRQKERARRMRLLK" gene complement(1555136..1555729) /locus_tag="Deba_1388" /db_xref="GeneID:9493846" CDS complement(1555136..1555729) /locus_tag="Deba_1388" /note="COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: afw:Anae109_4218 oxidoreductase molybdopterin binding; PFAM: oxidoreductase molybdopterin binding; SPTR: C0GHN9 Oxidoreductase molybdopterin binding; PFAM: Oxidoreductase molybdopterin binding domain" /codon_start=1 /transl_table=11 /product="oxidoreductase molybdopterin binding protein" /protein_id="YP_003807350.1" /db_xref="GI:302342821" /db_xref="GeneID:9493846" /translation="MSVLARLGMPAFKAGGVPAIADEDWRLEVAGLCESPAVYTLAQV AAWPQSQVDARLTSVSGFSLRALWQGVSWPDFLAIARPTAQASHATFVSWGGVYQTTV SLADLARPRTLLCLAVEGQALERVYGGPLRMIVPCLYGYKSAKWLAKIVFEDRMRGGY WEDRGYSRSGQIEPGWTFDLNTRQRRPIAGGGEVEEF" misc_feature complement(1555220..1555702) /locus_tag="Deba_1388" /note="Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199" /db_xref="CDD:185822" misc_feature complement(order(1555292..1555297,1555301..1555303, 1555310..1555312,1555334..1555336,1555349..1555351, 1555436..1555438,1555556..1555558,1555691..1555693, 1555697..1555699)) /locus_tag="Deba_1388" /note="Moco binding site; other site" /db_xref="CDD:29401" misc_feature complement(1555556..1555558) /locus_tag="Deba_1388" /note="metal coordination site [ion binding]; other site" /db_xref="CDD:29401" gene complement(1555754..1556659) /locus_tag="Deba_1389" /db_xref="GeneID:9493847" CDS complement(1555754..1556659) /locus_tag="Deba_1389" /note="COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dal:Dalk_0799 beta-lactamase domain protein; SPTR: B8FHT7 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_003807351.1" /db_xref="GI:302342822" /db_xref="GeneID:9493847" /translation="MIVSTSGTLAPGVHVLGPAWIPTVLIDAPRPALFDAGFSATGPI YQREITAVLGQRHPEYLFITHSHFDHCGAAPYLKKAFPGLKAAAAARAVEVWRKPSAQ KLIAELNAMVIQEMGHLTDESLNLEPWTPFDVELVVDDGQTIDLGDGLEVLCLATPGH TRDCISYYLPQRKALMCSEAAGIAYQGGQIFAEFLVDFDQYIASIQRIRQLDIEIFCQ GHGLFFVGRDEVRRRLDAAVDTAHAFRDQVLGLLRQEGGDQARVVELVKQREYDPLTG PKQEELPYLLNLRAKVACLAKAAGF" misc_feature complement(1556000..1556566) /locus_tag="Deba_1389" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(1556665..1558326) /locus_tag="Deba_1390" /db_xref="GeneID:9493848" CDS complement(1556665..1558326) /locus_tag="Deba_1390" /note="COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR010822:IPR001932; KEGG: dae:Dtox_0924 protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; SPTR: C8W350 Protein serine/threonine phosphatase; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE)" /codon_start=1 /transl_table=11 /product="protein serine/threonine phosphatase" /protein_id="YP_003807352.1" /db_xref="GI:302342823" /db_xref="GeneID:9493848" /translation="MSIRWQLLLSHLAVVAVAAVAMVIVARLSVDRAVDQLSLANHRL SETVLTKSGERLVMAQAQAVAQELARLLAGRDSADYAALRRDQALRAIATQDIRSQFG PAGYTDVYDQTGLAVLHPNKTVEGRNFAEWREKFPQMWELVRNSLHTPVSQGYYDFID KNNAPRKKFMAMVHVPRTKLIVVAAVDIDSYFKPVQARIAAEGQRIKDQALDQVWGHI LAGLAAAMLIGLACALFFAQRISQPVRHLAQGVAALGGGDFSVAVRADGAREIKALAQ AFNRLGGELVAHIERLKAETAARLAVASEMKVARQIQESLLPSTFPPFPEKRELRLYA INQPAKDVAGDFYDFFLVGPERLALVMGDVSGKGVPAALFMTMTRTLLRNICPDEPDP ARALAKANELLCQDNDASMFVTLFLAYYEIDSGRMVYANAGHNDPCVIAADGAARCFG RMGDVALGALAGQSYAAGWLDLAPGETLALYTDGITEAPSPDGREFGMDRFEQLLTAN ADRDVEDICRLVVEAANQFQAGERFDDVTIMLLRRAATEQNPSIG" misc_feature complement(1557472..>1557624) /locus_tag="Deba_1390" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(<1557295..>1557621) /locus_tag="Deba_1390" /note="Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]; Region: NtrY; COG5000" /db_xref="CDD:34605" misc_feature complement(1556755..1557330) /locus_tag="Deba_1390" /note="Sigma factor PP2C-like phosphatases; Region: PP2C_SIG; smart00331" /db_xref="CDD:128626" misc_feature complement(1556698..1557270) /locus_tag="Deba_1390" /note="Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cl00120" /db_xref="CDD:193664" gene complement(1558323..1558817) /locus_tag="Deba_1391" /db_xref="GeneID:9493849" CDS complement(1558323..1558817) /locus_tag="Deba_1391" /note="COGs: COG1592 Rubrerythrin; KEGG: chy:CHY_0738 rubrerythrin; SPTR: D0Y5T7 Rubrerythrin" /codon_start=1 /transl_table=11 /product="rubrerythrin" /protein_id="YP_003807353.1" /db_xref="GI:302342824" /db_xref="GeneID:9493849" /translation="MPLAELAQAFVLISQAATRARAFAQKAAQDGHEADARLLEALAA SQETQAGRLRLLLRGKIGPAEQNKAEAFGPALERLMADLSALATAAQDDGQAVAARAL TNCRQVAEALRALARHPAVTGQAYQVCQVCGFVQPDAPPERCPVCGAVPGKFAPAGPI SEKQ" misc_feature complement(1558356..>1558559) /locus_tag="Deba_1391" /note="Rubrerythrin [Energy production and conversion]; Region: COG1592" /db_xref="CDD:31780" misc_feature complement(1558356..1558436) /locus_tag="Deba_1391" /note="Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected...; Region: rubredoxin_like; cd00350" /db_xref="CDD:29431" misc_feature complement(order(1558377..1558379,1558386..1558388, 1558422..1558424,1558431..1558433)) /locus_tag="Deba_1391" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29431" gene 1559030..1560079 /locus_tag="Deba_1392" /db_xref="GeneID:9493850" CDS 1559030..1560079 /locus_tag="Deba_1392" /note="InterProIPR001789:IPR001440:IPR013105:IPR019734:IPR 013026:IPR011990:IPR006597:IPR011006; KEGG: dat:HRM2_46700 TPR-repeat-containing protein with CheY-like receiver; PFAM: response regulator receiver; hypothetical protein; hypothetical protein; SMART: response regulator receiver; Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein; SPTR: C0QGE7 TPR-repeat-containing protein with CheY-like receiver; PFAM: Response regulator receiver domain; Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807354.1" /db_xref="GI:302342825" /db_xref="GeneID:9493850" /translation="MRLWSRPVDFRKIKFLLAGPDPAMREGVALMLKGMGFEDIAEVH NGSLAWSHLKYRGAHAVVASWDMPEMNGMALLKVMRSDPDLANVHIILVADSLTKAQV IEAGEAGVSDIVITPINSPTFVKKIQTLLELGRDPQAFEAQRLYAKGLQLMEEKRWEE ALESFRRILGIYESAEIYYNMGYISTARGSYEEAIHYFRKATQINNAFAQAHEKMGEC YRQLARPKLAQKHFELAADIYMERRMDSNAEQVLNQVLELNPNTINVYNSLGILYRRQ GRYELAIKQYKKALKVNPEAVNIHYNLARIYYETKDYQRALILLEQALKINPDFADAQ DMLGTVNLRLGKDKE" misc_feature 1559075..1559422 /locus_tag="Deba_1392" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature 1559075..1559413 /locus_tag="Deba_1392" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature order(1559084..1559089,1559219..1559221,1559243..1559245, 1559309..1559311,1559366..1559368,1559375..1559380) /locus_tag="Deba_1392" /note="active site" /db_xref="CDD:29071" misc_feature 1559219..1559221 /locus_tag="Deba_1392" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1559228..1559233,1559237..1559245) /locus_tag="Deba_1392" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1559375..1559383 /locus_tag="Deba_1392" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1559462..1559743 /locus_tag="Deba_1392" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1559465..1559470,1559477..1559482,1559564..1559569, 1559573..1559578,1559585..1559590,1559666..1559671, 1559678..1559683,1559690..1559695) /locus_tag="Deba_1392" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1559474..1559476,1559510..1559512,1559522..1559524, 1559531..1559533,1559573..1559575,1559609..1559611, 1559621..1559623,1559630..1559632,1559675..1559677, 1559711..1559713,1559723..1559725,1559732..1559734) /locus_tag="Deba_1392" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 1559735..1560016 /locus_tag="Deba_1392" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1559735..1559737,1559771..1559773,1559783..1559785, 1559792..1559794,1559837..1559839,1559873..1559875, 1559885..1559887,1559894..1559896,1559939..1559941, 1559975..1559977,1559987..1559989,1559996..1559998) /locus_tag="Deba_1392" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(1559738..1559743,1559828..1559833,1559837..1559842, 1559849..1559854,1559930..1559935,1559942..1559947, 1559954..1559959) /locus_tag="Deba_1392" /note="binding surface" /db_xref="CDD:29151" misc_feature 1559750..1559998 /locus_tag="Deba_1392" /note="Anaphase-promoting complex, cyclosome, subunit 3; Region: Apc3; pfam12895" /db_xref="CDD:193368" gene complement(1560087..1560497) /locus_tag="Deba_1393" /db_xref="GeneID:9493851" CDS complement(1560087..1560497) /locus_tag="Deba_1393" /note="InterPro IPR015011; KEGG: sfu:Sfum_0182 hypothetical protein; SPTR: A0LEN2 Putative uncharacterized protein; PFAM: Archaea-specific editing domain of threonyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807355.1" /db_xref="GI:302342826" /db_xref="GeneID:9493851" /translation="MKLLMFYAPSFWFKTHEKALAEAPEADIEQTVEHAVVVFYQVEA HDVDDQTATINKTIKNIKWLSRKFQAGAVVLHSFNHLSASKAPPQAAQALMEAAAQRL AAVGLTVQQTPFGYLNEWRLHAAGPALAKVFKEF" misc_feature complement(1560090..1560497) /locus_tag="Deba_1393" /note="Archaea-specific editing domain of threonyl-tRNA synthetase; Region: tRNA-Thr_ED; pfam08915" /db_xref="CDD:149852" gene complement(1560494..1560997) /locus_tag="Deba_1394" /db_xref="GeneID:9493852" CDS complement(1560494..1560997) /locus_tag="Deba_1394" /note="COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: dma:DMR_42640 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: C4XQM1 Putative uncharacterized protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003807356.1" /db_xref="GI:302342827" /db_xref="GeneID:9493852" /translation="MNAKTVDETQIVMAQQMMPHDANPYGNVHGGVIVKLIDTTGGVV ALRHAGRNVVTASIDRLDFLQPAFVGDILILKASLNLVGSSSMEVGCRVEAENPITGQ VRHAASAYLTYVALDADGRPTAVPPLTLQGPEQTRRNAQAAQRRGLRLAERRNEAAMD RAGRPGQ" misc_feature complement(1560620..1560988) /locus_tag="Deba_1394" /note="Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain...; Region: BFIT_BACH; cd03442" /db_xref="CDD:48037" gene 1561129..1562553 /locus_tag="Deba_1395" /db_xref="GeneID:9493853" CDS 1561129..1562553 /locus_tag="Deba_1395" /EC_number="2.7.1.40" /note="COGs: COG0469 pyruvate kinase; InterProIPR015793:IPR015794:IPR015813:IPR001697:IPR 015795:IPR011037; KEGG: gau:GAU_1104 pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; PRIAM: pyruvate kinase; SPTR: Q1K4D5 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase, barrel domain; pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase" /codon_start=1 /transl_table=11 /product="pyruvate kinase" /protein_id="YP_003807357.1" /db_xref="GI:302342828" /db_xref="GeneID:9493853" /translation="MNSLRDCRKTKIVATIGPVTASPAMIGHLVDAGLDVARLNFSHG DHDGHRQVISAVRRAAAAAGRPVGVLMDLAGPKIRLGVLPLERRLRTGQAVTLVQGES AEGEAIPVNYPHLLEDVEIGGRILMADGLVELVVTGKKDGQLLCSVITGGEVSSRKGV NLPTSVLRIPAFTEKDRADLEMGLAEDVDFVALSFVRHEQDLAPVREILARREQPPLL IAKIEKPQAVERLDEILEAVDGVMVARGDLGVEMPLEEVPIVQKRIIDHARRAGKLVI TATQMLRSMMTSPRPTRAEATDVANAVFDGTDAVMLSDETAAGNYPLDSVKVMDRICR AAERELDTAHYLRQELSSLLPATEAALSRAAVYLARDLNAAGIVASTASGGTARLIAR FRPRQPVIGLTPHQHTLRQLTMSWGVIPAEVAPFGSIEEMLAATARWCKEHGLADKGD KLIVTAGLPLQVRGSTNMAKVMEL" misc_feature 1561150..1562541 /locus_tag="Deba_1395" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" misc_feature 1561150..1562520 /locus_tag="Deba_1395" /note="pyruvate kinase; Provisional; Region: PRK05826" /db_xref="CDD:180277" misc_feature order(1561153..1561158,1561324..1561326,1561330..1561332, 1561354..1561365,1561606..1561611,1561627..1561629, 1561636..1561650,1561693..1561695,1561717..1561719, 1561738..1561740,1561771..1561773,1561879..1561881, 1561933..1561938,1561948..1561950,1562044..1562046, 1562050..1562052,1562137..1562139,1562143..1562148, 1562302..1562304,1562308..1562310,1562314..1562316, 1562347..1562349,1562356..1562361,1562365..1562367, 1562371..1562379) /locus_tag="Deba_1395" /note="domain interfaces; other site" /db_xref="CDD:29370" misc_feature order(1561240..1561242,1561246..1561248,1561342..1561344, 1561711..1561713,1561789..1561791,1561795..1561797, 1561867..1561869,1561963..1561965) /locus_tag="Deba_1395" /note="active site" /db_xref="CDD:29370" gene 1562688..1563083 /locus_tag="Deba_1396" /db_xref="GeneID:9493854" CDS 1562688..1563083 /locus_tag="Deba_1396" /note="KEGG: dsa:Desal_0956 hypothetical protein; SPTR: C6BZW4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807358.1" /db_xref="GI:302342829" /db_xref="GeneID:9493854" /translation="MKSDQFSDIFSPKAMDELLPPGLADRFFDALYGDAREGAWDVTM RYAGSGEGRLLFEFQLHQRPGKCLACNLTYGLPDVFSRHPVINVKGLVKKIDEMLAGR ANCGQWQVGRTRELSRELHVIPLAIAING" gene complement(1563171..1564268) /locus_tag="Deba_1397" /db_xref="GeneID:9493855" CDS complement(1563171..1564268) /locus_tag="Deba_1397" /note="COGs: COG1247 Sortase and related acyltransferase; InterPro IPR013216:IPR000182:IPR016181; KEGG: mma:MM_1902 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; methyltransferase type 11; SPTR: Q8PVR0 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003807359.1" /db_xref="GI:302342830" /db_xref="GeneID:9493855" /translation="MGRSKDMARDLRWGGRVLGKPRKTRLAHKGAYNTEDTPYHVLEH VFTHVAPIAENDVIVDIGCGWGRVINYLLSLGAPNRVIGLELDPEVAADTAARLAPHA NVSIVCADASAALPEDGTLFYLYNPFAEFVVRRLSARLMALPHLDRLRVVYYNSLHLE PFVKDPDWRIEPFQTPRGRVGALIRPARHLFSMNEGETEMKHSGEIVLRPADAQDGPA VMAIFNHYVANSFAAYPETPHPPQAFEHLLNICLDGSFVVAEEDGQVIGLGFLTPFLP AETLRRTAQVTYFIAPEHTGKGLGRLLLQSLVASARQRGVDTLLAHVSSLNQGSIRFH QQNGFERRGELQRVGRKHGQDFGVVYLQKFI" misc_feature complement(<1563936..1564121) /locus_tag="Deba_1397" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" misc_feature complement(1563207..1563680) /locus_tag="Deba_1397" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" misc_feature complement(1563303..1563503) /locus_tag="Deba_1397" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(1563366..1563371,1563399..1563404)) /locus_tag="Deba_1397" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(1564278..1565315) /locus_tag="Deba_1398" /db_xref="GeneID:9493856" CDS complement(1564278..1565315) /locus_tag="Deba_1398" /EC_number="6.6.1.1" /note="COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR011704:IPR003593; KEGG: adg:Adeg_0556 magnesium chelatase; PFAM: ATPase associated with various cellular activities AAA_5; PRIAM: Magnesium chelatase; SMART: ATPase AAA; SPTR: C9RBS7 Magnesium chelatase; PFAM: Magnesium chelatase, subunit ChlI" /codon_start=1 /transl_table=11 /product="Magnesium chelatase" /protein_id="YP_003807360.1" /db_xref="GI:302342831" /db_xref="GeneID:9493856" /translation="MNHAPTQNAQPLYPFAALVGQDQMKLALIINVVNPRVGGVLIRG EKGTAKSTAVRALAELMPQQKAVADCPYACDPRDAAAMCAACRARLSAGQELPVATRR VRVVELPVGATEDRLLGSLDMESAIGEGQTRFQPGILAAANRQILYVDEVNLLDDHLV DALLDAAAMGVNTVERESISVSHPSRFTLVGTMNPEEGELRPQLTDRFGLCVQVGGLS DPAQRVAVIANRLAFEKDPARFVKAHAAAGRAIARAIAAARRLLPKVQAGPEILDRVV QLTLGLGVDGHRGDLTLLKCAMTMAALDGRRAVLRSDVDAAALLALPHRLRRRPLAEM DFDIAARIRRI" misc_feature complement(1564371..1565300) /locus_tag="Deba_1398" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene complement(1565321..1567363) /locus_tag="Deba_1399" /db_xref="GeneID:9493857" CDS complement(1565321..1567363) /locus_tag="Deba_1399" /EC_number="6.6.1.1" /note="COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR000523:IPR002035:IPR003593; KEGG: dau:Daud_1209 magnesium chelatase; PFAM: von Willebrand factor type A; magnesium chelatase ChlI subunit; PRIAM: Magnesium chelatase; SMART: von Willebrand factor type A; ATPase AAA; SPTR: B1I3V2 Magnesium chelatase; PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain" /codon_start=1 /transl_table=11 /product="Magnesium chelatase" /protein_id="YP_003807361.1" /db_xref="GI:302342832" /db_xref="GeneID:9493857" /translation="MAKHATSPSGPIGYPFAAIVGQRSMKLALLLAAVDPGLGGVLLR GEKGTAKSTAARALAGLLPPLCVVAGCPLGCDPDGPPCPRCAAASRPLPRATAATPFV DLPLGATEDRLVGALDINAAIQEGRLAFAPGLLARAHRGVLYIDEVNLLAPHLAHLIL DAAASGLATVEREGVSFAHPAQITLIASYNPEEGGLGPQLLDRFGLCVEVAAEQDPEA RKELLRRRLAHEADPAAFAARWAKAEDRLRGRLLAARQALANVSLTPSAARRAAALAA WAGARGQRAELAMARAARALAAWQGRGQATPADVDRVAAMALAHRATGAAQNHGQSFE RLLKDPPPDQPGEEEPRRVVVIKADDQLQPLGDQPGPQERVLQLWEAAEAPAIATRLS AKETGSLRQAGRRAARQTDSARGRYVRASALRLGRGLAFDATLRAAAPHQRSRRAPGG PALVVRGQDIREKVRLARRGRLIMFCVDASGSMNAAARMRVSKQAVLGLLTEAYQKRD RVGLVAFGGNAARLLLPPTGSVEVARKLLAELPTGGKTPLAAGLAVTAQAVSRELARD PKLTPLVVVFTDGRPNVPLAASLGEDIDLGRAGNKGGGWGDGWGDGGYADREALDLAK SLAKDGRVRYVVVDIDTGHFHEANLCRPLADYLGAPCISLRRLTADRVLDLVKAHW" misc_feature complement(1565372..1567324) /locus_tag="Deba_1399" /note="cobaltochelatase subunit; Region: Cob-chelat-sub; TIGR02442" /db_xref="CDD:162859" misc_feature complement(1566401..1567324) /locus_tag="Deba_1399" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1565330..1565953) /locus_tag="Deba_1399" /note="Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase...; Region: vWA_Magnesium_chelatase; cd01451" /db_xref="CDD:29224" misc_feature complement(order(1565630..1565632,1565726..1565728, 1565918..1565920,1565924..1565926,1565930..1565932)) /locus_tag="Deba_1399" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:29224" gene 1567734..1568675 /locus_tag="Deba_1400" /db_xref="GeneID:9493858" CDS 1567734..1568675 /locus_tag="Deba_1400" /EC_number="1.12.99.6" /EC_number="1.12.2.1" /note="COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR006137:IPR001821:IPR017909:IPR006311; KEGG: dal:Dalk_2275 hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: cytochrome-c3 hydrogenase; SPTR: B8FIH8 Hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; hydrogenase (NiFe) small subunit (hydA)" /codon_start=1 /transl_table=11 /product="hydrogenase (NiFe) small subunit HydA" /protein_id="YP_003807362.1" /db_xref="GI:302342833" /db_xref="GeneID:9493858" /translation="MDKLDHVLEHIDSKGINRRDFIKLTTLVTSVLGLAPAMIPKVAQ AMTAKERPTVIWLHFAECTGCSEAFIRSSYPWIDELVLEVLNVAYHETIMAPAGHAAE KSLHEAMERYKGKYILVCEGGIPTADGGVWGKVAGRPMIEIAKEAAKGAVAVMAMGTC ACYGGVQAAKPNPTKAMGVGEALGIQTINLAGCPPNPVNAVSAVVQFLLLGRTPALDD YGRPKFAYGATIHDKCPRRAHFEEAEFVKRFGDEGAINGWCLFEMGCKGPDTHNNCSL VKFNDGTNWPVGAGHPCLGCSEPQFWDNMAPFYTSKP" misc_feature 1567743..1568672 /locus_tag="Deba_1400" /note="Ni,Fe-hydrogenase I small subunit [Energy production and conversion]; Region: HyaA; COG1740" /db_xref="CDD:31926" misc_feature 1567917..1568312 /locus_tag="Deba_1400" /note="NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; cl00419" /db_xref="CDD:193811" gene 1568738..1570387 /locus_tag="Deba_1401" /db_xref="GeneID:9493859" CDS 1568738..1570387 /locus_tag="Deba_1401" /note="COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501:IPR018194; KEGG: dal:Dalk_2276 nickel-dependent hydrogenase large subunit; PFAM: nickel-dependent hydrogenase large subunit; SPTR: B8FIH9 Nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase" /codon_start=1 /transl_table=11 /product="nickel-dependent hydrogenase large subunit" /protein_id="YP_003807363.1" /db_xref="GI:302342834" /db_xref="GeneID:9493859" /translation="MAKLTIDPITRIEGHLRIDVEIENGKVKDAWSSAQLFRGLEIIL KGRDPRDAPHITQRACGVCTEVHALASIRALDDAAGVKIPDLARLTRNLLHGVQFIHD HITHFYVLHALDWVDVVNALQADPKKTAALADSLGNYPNSGVNDFRDVKARLQKFVDS GQLGPFANGYWGHPDYRLPAEANLLAAAHYIEWLRMQTRAARMMAMLGGKNPHVQVHV TGGVSCVQDVMDVERLSEFLWYLQAMRRFIDNVYLPDLLAVASFYKDWGGIGGTTNFL AYGNFPQKSGPYGQEDMWLPGGVIFDRDIAKPQPVDPARITEEVKRAWYADGEPRHPY QGVTEPILPDYDYEGKYSFFKAPRYEGRPMEVGPLAQMLMAYAGGVAPVKASVEAVLK HLDIPVTALFSTLGRTAARAIQTKVITDEMELWVNQIVERLRVGDTETVARWQWPGEA MGMGLIDVPRGALGHWVKQNAQNRIDNYQLVVPSTWNLGPRDAKGQLGPVEESLVGTP VADPKRPVEILRTVHSFDPCIACGVHVIDPHTNEVYKFKVL" misc_feature 1568849..1570339 /locus_tag="Deba_1401" /note="Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Region: Complex1_49kDa; cl00417" /db_xref="CDD:193809" gene 1570487..1571014 /locus_tag="Deba_1402" /db_xref="GeneID:9493860" CDS 1570487..1571014 /locus_tag="Deba_1402" /note="COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: sfu:Sfum_2951 hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; SPTR: A0LMH3 Hydrogenase expression/formation protein; TIGRFAM: hydrogenase maturation protease; PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease" /codon_start=1 /transl_table=11 /product="hydrogenase maturation protease" /protein_id="YP_003807364.1" /db_xref="GI:302342835" /db_xref="GeneID:9493860" /translation="MRILVLGVGNVLLRDEGVGVRVLGELARRFAFPENVRLVDGGVL GLSLTGTIMDADHVVVIDAVRGGKPPGTVFRFDWEARPDHIHYKDSLHQIDLMETMAI LPLLGDAPKVTVVGVEYEDIDGWGLYLTPKVEAAVEKMIAAVLAELDALGVRPLARSR WEKAPDVFGGASQGN" misc_feature 1570490..1570930 /locus_tag="Deba_1402" /note="coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit); Region: frhD; TIGR00130" /db_xref="CDD:161726" misc_feature 1570493..1570930 /locus_tag="Deba_1402" /note="Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase...; Region: H2MP_MemB-H2up; cd06062" /db_xref="CDD:99873" misc_feature order(1570514..1570516,1570556..1570558,1570604..1570612) /locus_tag="Deba_1402" /note="putative substrate-binding site; other site" /db_xref="CDD:99873" misc_feature order(1570532..1570534,1570670..1570672,1570760..1570762) /locus_tag="Deba_1402" /note="nickel binding site [ion binding]; other site" /db_xref="CDD:99873" gene 1570983..1571231 /locus_tag="Deba_1403" /db_xref="GeneID:9493861" CDS 1570983..1571231 /locus_tag="Deba_1403" /note="COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109; KEGG: dal:Dalk_2278 hydrogenase assembly chaperone HypC/HupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); SPTR: B8FII1 Hydrogenase assembly chaperone hypC/hupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF" /codon_start=1 /transl_table=11 /product="hydrogenase assembly chaperone hypC/hupF" /protein_id="YP_003807365.1" /db_xref="GI:302342836" /db_xref="GeneID:9493861" /translation="MCLAAPAKVIELDEGMATVDVGGVLRRVSTVLAPPLKVGDYVIM HAGFAMHRLDESEALASLALLREMVEAVDRQGGGEKQS" misc_feature 1570983..>1571135 /locus_tag="Deba_1403" /note="HupF/HypC family; Region: HupF_HypC; cl00394" /db_xref="CDD:193800" gene 1571228..1571449 /locus_tag="Deba_1404" /db_xref="GeneID:9493862" CDS 1571228..1571449 /locus_tag="Deba_1404" /note="KEGG: npu:Npun_CR034 XRE family transcriptional regulator; SPTR: B2JBS1 Transcriptional regulator, XRE family; PFAM: Nin one binding (NOB1) Zn-ribbon like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807366.1" /db_xref="GI:302342837" /db_xref="GeneID:9493862" /translation="MSEKIARKEKVCQEEACAENWEQLGEDWAAKCASFVFCPFCANE MITRCSACGEAIHDIGFKFCPWCGAQFEQ" gene 1571652..1573124 /locus_tag="Deba_1405" /db_xref="GeneID:9493863" CDS 1571652..1573124 /locus_tag="Deba_1405" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR003593:IPR 011006:IPR009057; KEGG: gur:Gura_2708 two component, sigma-54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: A5G514 Putative two component, sigma-54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003807367.1" /db_xref="GI:302342838" /db_xref="GeneID:9493863" /translation="MARVLIIDDDPLICQMLAAKLVKMDCLADSAHTLAAGVAMAQAQ PYDVVYLDVRMPDGNGLEQVEKLRLSGAQPEVIIITGMGDPEGAEKAIKSGAWDYIEK GSSIKDMVLPLMRALQYRREKGAAKPLRALKREAIIGSSPKMQLCFDMLAQAAGSDAS VLITGQTGTGKELFARAIHENSPRGHSSFVVVDCAALPESLVESMLFGHERGAFTGAD RPRDGLVSQANGGTLFLDEVGELPLSMQKAFLRVLQERRFRPIGAKEEVSSEFRLVAA TNRDLDQMAADGRFRQDLLYRLRSITIHLPPLCQRQDDLHELTVSYLNRLSQRWGVEI KGVSPDFFDALRHYNWPGNVRELFNVLEQAMTAGGSSPTLFARHLPESIRIARAVDSM SRAAGDGHKAAVITTLANHTGGRSAPAKQPAWPGPDASGMFPTLGDVLEEAMARVERA YLADLMDHVDWDIRRACAISGLSRTGLYNRLKKCGVSRRA" misc_feature 1571652..1573115 /locus_tag="Deba_1405" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 1571664..1572002 /locus_tag="Deba_1405" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1571673..1571678,1571805..1571807,1571829..1571831, 1571889..1571891,1571946..1571948,1571955..1571960) /locus_tag="Deba_1405" /note="active site" /db_xref="CDD:29071" misc_feature 1571805..1571807 /locus_tag="Deba_1405" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1571814..1571819,1571823..1571831) /locus_tag="Deba_1405" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1571955..1571963 /locus_tag="Deba_1405" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1572075..1572572 /locus_tag="Deba_1405" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1572144..1572167 /locus_tag="Deba_1405" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1572147..1572170,1572357..1572359,1572483..1572485) /locus_tag="Deba_1405" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1572345..1572362 /locus_tag="Deba_1405" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1572540..1572542 /locus_tag="Deba_1405" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1572981..1573100 /locus_tag="Deba_1405" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(1573126..1573476) /locus_tag="Deba_1406" /db_xref="GeneID:9493864" CDS complement(1573126..1573476) /locus_tag="Deba_1406" /note="KEGG: sfu:Sfum_1272 hypothetical protein; SPTR: A0LHR2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807368.1" /db_xref="GI:302342839" /db_xref="GeneID:9493864" /translation="MSRFQQIRVRVEAHYAKSLAKDFPALHGRICKLDNRYLQHEPPL MELVPVVARLGLDPHVEPKTRQIASRWAGRLEALERQAQNNIASWLLAAAEQDLARMD ELFMELEEALAELD" gene complement(1573553..1573866) /locus_tag="Deba_R0025" /db_xref="GeneID:9493865" ncRNA complement(1573553..1573866) /locus_tag="Deba_R0025" /ncRNA_class="RNase_P_RNA" /product="RNA component of RNase P" /note="Bacterial RNase P class A as predicted by Rfam (RF00010), score 248.74" /db_xref="GeneID:9493865" gene complement(1573942..1574550) /locus_tag="Deba_1407" /db_xref="GeneID:9493866" CDS complement(1573942..1574550) /locus_tag="Deba_1407" /note="COGs: COG0328 ribonuclease HI; InterPro IPR002156:IPR012337; KEGG: mxa:MXAN_5728 ribonuclease H; PFAM: ribonuclease H; SPTR: Q098P5 RNase H; PFAM: RNase H" /codon_start=1 /transl_table=11 /product="ribonuclease H" /protein_id="YP_003807369.1" /db_xref="GI:302342840" /db_xref="GeneID:9493866" /translation="MSHSAPDDAGCAALLTALAQALERGQGLDLPADEATMARCLRRA AALLAPEPTQAPPSRPADLARPQAFAATLYADGGARGNPGPAGAGAVIYDQSGAQIAA LSRYLGQATNNVAEYQALLMGLEAALELGVGQIDVRLDSELLVKQLGGQYQVKAPHLK PLFQKAKALLQQFTGAHIVHVRREQNGVADGLANQAMDRRAN" misc_feature complement(1573957..1574280) /locus_tag="Deba_1407" /note="RNAse HI family that includes Archaeal RNase HI; Region: RNase_HI_archaeal_like; cd09279" /db_xref="CDD:187703" misc_feature complement(order(1573969..1573971,1574011..1574013, 1574131..1574133,1574203..1574205,1574212..1574220)) /locus_tag="Deba_1407" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:187703" misc_feature complement(order(1573981..1573983,1574131..1574133, 1574203..1574205)) /locus_tag="Deba_1407" /note="active site" /db_xref="CDD:187703" gene complement(1574547..1575272) /locus_tag="Deba_1408" /db_xref="GeneID:9493867" CDS complement(1574547..1575272) /locus_tag="Deba_1408" /note="COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: sfu:Sfum_1209 hypothetical protein; PFAM: protein of unknown function DUF164; SPTR: A0LHK0 Putative uncharacterized protein; PFAM: Putative zinc ribbon domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807370.1" /db_xref="GI:302342841" /db_xref="GeneID:9493867" /translation="MIEQLRLLVKLQTVDKTAYELEQELGRIPARLAELDQIEQSLHS EQNIVQAELDQAAKIRKELERRAEELRARQRKAESRLMGAKAQKEYQAATAEIDEAKD SIKETDDLLIEAMERHEALAAKAGALGEKLAAAVAGAEEERANLAQRKAHLEGQIQQL QGQRKTMTCGIDAQLLSEYDFIRPRRQGVAVAPVSGGSCGVCHMNMPPQQYNELQRMD KIMRCSSCQRLVYWADSDQFNDL" misc_feature complement(1574562..1575272) /locus_tag="Deba_1408" /note="Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]; Region: COG1579" /db_xref="CDD:31767" misc_feature complement(1574586..1574750) /locus_tag="Deba_1408" /note="Putative zinc ribbon domain; Region: DUF164; pfam02591" /db_xref="CDD:190355" gene complement(1575322..1576476) /locus_tag="Deba_1409" /db_xref="GeneID:9493868" CDS complement(1575322..1576476) /locus_tag="Deba_1409" /note="COGs: COG0327 conserved hypothetical protein; InterPro IPR002678:IPR017221:IPR011322; KEGG: sth:STH598 hypothetical protein; PFAM: protein of unknown function DUF34; SPTR: Q67RW0 Putative uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: conserved hypothetical protein TIGR00486" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807371.1" /db_xref="GI:302342842" /db_xref="GeneID:9493868" /translation="MASSLQTPKARDIVGLMERWAPSWTAEDWDNVGLLLGDPNAAVR RAWVALELSPELLERAIAARVDMILTHHPPLFRPLKNLRQDNPATARLLRAANAGVAL FAAHTNLDAAPGGVNDALAARLDLVEAKPLAPAGMGGLQKLVCFAPQSHAEQIAQALF AAGAGVIGDYAQCSFSAPGRGHFLAPDQGRPLVGQAGQAVTVEEIRLEVVVPAREAGA AVRAMLRAHPYEEPAFDIYPLRQGPSGFGLGRVGQLAEPMAGERFAAWAARRLGASTA MIAGPAPDIVHRVAVLGGSGAEYLAQAAAMGAQAFVTGEAGHHSAEQAQDLGLLLCCL GHYQTEVVIVEPWAKRLAAMLAEAGFDCEITASAQGQGPWRPADGPGARP" misc_feature complement(<1576000..1576443) /locus_tag="Deba_1409" /note="NIF3 (NGG1p interacting factor 3); Region: NIF3; cl01309" /db_xref="CDD:194097" misc_feature complement(1575745..1576065) /locus_tag="Deba_1409" /note="NIF3 (NGG1p interacting factor 3); Region: NIF3; cl01309" /db_xref="CDD:194097" misc_feature complement(1575406..>1575774) /locus_tag="Deba_1409" /note="NIF3 (NGG1p interacting factor 3); Region: NIF3; cl01309" /db_xref="CDD:194097" gene complement(1576606..1576681) /locus_tag="Deba_R0026" /db_xref="GeneID:9493869" tRNA complement(1576606..1576681) /locus_tag="Deba_R0026" /product="tRNA-Met" /db_xref="GeneID:9493869" gene complement(1576747..1577610) /locus_tag="Deba_1410" /db_xref="GeneID:9493870" CDS complement(1576747..1577610) /locus_tag="Deba_1410" /note="COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: shi:Shel_26550 predicted TIM-barrel fold metal-dependent hydrolase; PFAM: amidohydrolase 2; SPTR: B0MKA2 Putative uncharacterized protein; manually curated; PFAM: Amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_003807372.1" /db_xref="GI:302342843" /db_xref="GeneID:9493870" /translation="MIIDAHCHAFLPEDLEALVQKLTILDHQLPDDNPHKWRLDMGGA LEDVLAAQDACGVDEFVLLPVTSRPERVTAMNRWAAQAAREHDAIIPFGTLLPGCDVS AELALMAELGLRGIKLHPFLQRFRLDDPLVLRMFDQIDDSGLPVLIDTLQDDGLLAAK PHMTGLVEAFNLHGCQAHELCAVAAAHPRTRFIAAHGGSCYGWDQIDQLNRLDNVYYD LSWIGYLIPPEQVVAIVRGKGAERVVYGSDAPFRSPGPYLEWFMGLPLTAGEREMILG GTMRDLLAGGA" misc_feature complement(1576762..1577610) /locus_tag="Deba_1410" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature complement(1576765..1577610) /locus_tag="Deba_1410" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" gene 1577776..1579746 /locus_tag="Deba_1411" /db_xref="GeneID:9493871" CDS 1577776..1579746 /locus_tag="Deba_1411" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR018212:IPR004090; KEGG: drt:Dret_2373 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: C8X5F8 methyl-accepting chemotaxis sensory transducer; PFAM: Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003807373.1" /db_xref="GI:302342844" /db_xref="GeneID:9493871" /translation="MALRIGISGKILSGVLASLAPMALVILLLSYLAASDIQKSAQQD LEHITTNLRAICQSQEELLQKKVDSDLKVAVNVLNQFSWEAPMAISPDQTTKWTVTNQ DTKQSQELELPLLQAGDHIISKNFEAVDRIKSLVGSEAAFFQRMNDQGDLLNVSTTVA MGDKRAIGTYMPASSPVAQALLANKEYRGRAFVVDGWYITAYKPMIDVNAKVVGGLYV GVPELSTKSLLDAFRKIKVYDSGFAFVFNRQGDMIVHPKLAGTNVLGQGEQKAMFGQM VQALDDKGAAGQVRSIKLDDADGRAMELCYATFQPWDWVIGVAVYEDEMMAGVRKMNL TAWLVLGLTVLVMAPFGLVLSRSLAKPLKRSISALTEGAQRMSQSAATLSSSSQSLAE GSSQQAAALEETSASLEEMSSMTKKTAVDANQADGSMGQARKMVDQAGQDMELMAGSM GQIADAGREIGKIIKTIDEIAFQTNILALNAAVEAARAGEAGAGFAVVAGEVRNLAMR SADAARNTQKLIDEVVGRINQGAELVGRSKDSFQAVAGASQKAAGLISEISVASGEQA QGIEQVSKALHQMDSVVQRNAAQAEEAASAAEEMEAQARTVQNVARDLQRLMHGAGEP VDQTPAGGAAPGKFGKLTQAVANGLKQLPAPK" misc_feature <1578496..>1578849 /locus_tag="Deba_1411" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG4564" /db_xref="CDD:34202" misc_feature 1579030..1579533 /locus_tag="Deba_1411" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 1579966..1582458 /locus_tag="Deba_1412" /db_xref="GeneID:9493872" CDS 1579966..1582458 /locus_tag="Deba_1412" /note="COGs: COG0495 Leucyl-tRNA synthetase; InterProIPR015945:IPR013155:IPR001412:IPR014729:IPR 002302:IPR009008:IPR009080; KEGG: glo:Glov_2116 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; Arginyl-tRNA synthetase, class Ic, core; SPTR: B3E3L3 Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family" /codon_start=1 /transl_table=11 /product="leucyl-tRNA synthetase" /protein_id="YP_003807374.1" /db_xref="GI:302342845" /db_xref="GeneID:9493872" /translation="MAEDKTIKEERYNPAEVEARWQGRWSESRLFDVDEDPAKPKYYL LEMFPYPSGRIHMGHMRVYSIGDALARLKRMRGFNVLHPMGWDAFGMPAENAAIAHHT HPAKWTYENIAYMRGQLKKLGFSYDWRRELATCDPSYYRWEQLVFIKMWEKGLVYRKK SLVNWCAKCQTVLANEQVEDGKCWRCDSEAQKKQMHGYFFRITDYVQELLDHTEKLPG WPERVLTMQRNWIGKSHGAEIDFPIEGRDEAVKVFTTRADTIFGATFMSLAPEHPMAL ELAAAAGREAQVKDFIDRVGRQSFADRADDKQKEGVFTGAYCLNPVNGRRMPVYVANF VLMDYGAGAVMAVPTHDQRDFEFAKQYGLELVEVIVGPDGPQGVENMERAFTDYGRLV GSGQFDGMTSDEAKRAIPQWLAEQGLGKLTVNYRLRDWGISRQRYWGAPIPMIHCDKC GLVPARVEDLPVVLPLDAQLPATGGSPLPLLEGWVNTTCPCCQGPARRETDTMDTFVE SSWYFARYACPDYVDGPLDPARVDYWMPVDQYVGGIEHAVLHLLYSRFFVKVLRDLGM LKVDEPFLNLLTQGMVIKDGAKMSKSKGNVVDPDDMVARYGADTVRLFSLFAAPPERD LEWSDQGVEGAHRFLGRLWRLGLAVAETPAGERPGPCDGPLGELRRKAHETIKKVTED TDRFQFNTAIAALMELINQISLVEQDAALADDPRRAAVLREAVEAAVVLISPMAPHIA DELWSRLGHAEFLLNVAWPVYDEAALVVAEKEVVFQINGKVRGKRMLPAQSDDEALKQ AALADPKVRKFLGEAVVKKVIVVQGRLVNIVI" misc_feature 1579990..1582455 /locus_tag="Deba_1412" /note="leucyl-tRNA synthetase; Validated; Region: leuS; PRK00390" /db_xref="CDD:178996" misc_feature 1580086..>1580670 /locus_tag="Deba_1412" /note="catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812" /db_xref="CDD:173906" misc_feature 1580131..1580142 /locus_tag="Deba_1412" /note="HIGH motif; other site" /db_xref="CDD:173906" misc_feature <1581244..1581846 /locus_tag="Deba_1412" /note="catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812" /db_xref="CDD:173906" misc_feature order(1581592..1581594,1581598..1581603,1581613..1581615, 1581700..1581702,1581709..1581711,1581730..1581732, 1581736..1581738) /locus_tag="Deba_1412" /note="active site" /db_xref="CDD:173906" misc_feature 1581727..1581741 /locus_tag="Deba_1412" /note="KMSKS motif; other site" /db_xref="CDD:173906" misc_feature 1581844..1582206 /locus_tag="Deba_1412" /note="Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; Region: Anticodon_Ia_Leu_BEm; cd07958" /db_xref="CDD:153412" misc_feature order(1581853..1581855,1581862..1581867,1581874..1581876, 1581886..1581888,1582030..1582032,1582042..1582044, 1582051..1582056,1582063..1582065,1582072..1582074, 1582099..1582101) /locus_tag="Deba_1412" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153412" gene 1582526..1583038 /locus_tag="Deba_1413" /db_xref="GeneID:9493873" CDS 1582526..1583038 /locus_tag="Deba_1413" /note="KEGG: sat:SYN_02375 hypothetical protein; SPTR: Q2LQK6 Hypothetical membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807375.1" /db_xref="GI:302342846" /db_xref="GeneID:9493873" /translation="MKKALFGLFVLTLVISGCGYGFRNGQNNLPPDVHSIAVPVFANN TAEVRIETIFTDAVIAQFTRSQIVRIVPEGEADAVLRATLVGISLTDVSLTTAESSRQ RRITIYVNAKLVRVRDGKVLWKENKLRQNRTYLITGSNVSDEGSKRMAITELAADLAE TLHDRVFENF" misc_feature 1582700..1583011 /locus_tag="Deba_1413" /note="Lipopolysaccharide-assembly; Region: LptE; cl01125" /db_xref="CDD:186347" gene 1583059..1584108 /locus_tag="Deba_1414" /db_xref="GeneID:9493874" CDS 1583059..1584108 /locus_tag="Deba_1414" /note="COGs: COG1466 DNA polymerase III subunit delta; InterPro IPR010372:IPR005790:IPR008921; KEGG: gur:Gura_3132 DNA polymerase III, subunit delta; PFAM: DNA polymerase III delta; SPTR: A5G675 DNA polymerase III, subunit delta; TIGRFAM: DNA polymerase III, subunit delta; PFAM: DNA polymerase III, subunit delta; TIGRFAM: DNA polymerase III, subunit delta" /codon_start=1 /transl_table=11 /product="DNA polymerase III, subunit delta" /protein_id="YP_003807376.1" /db_xref="GI:302342847" /db_xref="GeneID:9493874" /translation="MSADGAGQGPAGLPWPELAGGEPGPLYGVFGEEDFLVGHGVEAF CQCPAFGPNAALNTERFHAADTPPARVLESARTLPFLGRRRLVLVLDADQYKAAQLGE FVGYLEDPPPSACLVFAGAKLDARTKFAKLLQQRGRVHVFAKLYPNQLPPWLQGRAKV RGKRLSASAAAFLAELAGLGLGALDSEVEKLSLYVGKRPEIGLDDARAVLGGGRLSTI FDLTDAIAAADLHRALTAFNQLHALGEAPVRVLAMVQRMFRQVLEASRLLERGGDERQ VARQMRIPPQAAQTLLGRARRESKTGLSARLARLLQADMALKSSPATDRAIVERLIMD LCRMPSADARRGKNA" misc_feature 1583137..1583637 /locus_tag="Deba_1414" /note="DNA polymerase III, delta subunit; Region: DNA_pol3_delta; pfam06144" /db_xref="CDD:148006" misc_feature 1583221..1584066 /locus_tag="Deba_1414" /note="DNA polymerase III, delta subunit; Region: holA; TIGR01128" /db_xref="CDD:188110" gene complement(1584105..1584371) /locus_tag="Deba_1415" /db_xref="GeneID:9493875" CDS complement(1584105..1584371) /locus_tag="Deba_1415" /note="COGs: COG0268 ribosomal protein S20; InterPro IPR002583; KEGG: gme:Gmet_2297 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: Q39TA2 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; TIGRFAM: ribosomal protein S20" /codon_start=1 /transl_table=11 /product="ribosomal protein S20" /protein_id="YP_003807377.1" /db_xref="GI:302342848" /db_xref="GeneID:9493875" /translation="MANHQSALKRARQSEKRRIRNKSVRTNLRRTIRTVRQAVEAGDA AVAQQALQAAIPVIDKAASKGVIHRNNASRKISRLAMKVNALNA" misc_feature complement(1584108..1584371) /locus_tag="Deba_1415" /note="Ribosomal protein S20; Region: Ribosomal_S20p; cl00384" /db_xref="CDD:193796" gene 1584489..1586057 /locus_tag="Deba_1416" /db_xref="GeneID:9493876" CDS 1584489..1586057 /locus_tag="Deba_1416" /note="COGs: COG0728 membrane protein virulence factor; InterPro IPR004268; KEGG: dal:Dalk_4414 integral membrane protein MviN; PFAM: virulence factor MVIN family protein; SPTR: B8FNC4 Integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN" /codon_start=1 /transl_table=11 /product="integral membrane protein MviN" /protein_id="YP_003807378.1" /db_xref="GI:302342849" /db_xref="GeneID:9493876" /translation="MSTSGEKQKVARAAGVVGMATLASRLCGFARDLATAYFFGASAA ADAFFVAFRIPNLLRRLFAEGSLTIAFIPVFTEVLRKKGREEADLLARSAYTLLALAL VVVCLVGVIFAEPIVRLIAPGFTPGQETHTLAVLLTRWCLPFIFFISLVALASGVLNS LGHFFAPAFAPALFNLCVIGCALFLSDRLDPPVLSLAIGVLLGGLGQLLLQLPYLRAR GVSLRPLWRPRDPALRRVLRLMGPAAFGAAVYQITVFINTQLASLLASGSVSYLYYAD RLIQFPLGIFAIAISTAILPSLSRQAADADRQGLVETMGYGLRLTLFITVPSMVGLVV LARPLVELLFMRGEFGVESAAATANALVGYGLGLWAFAGLRAVVQTFYALKDTKTPVK VAAGCLVVNVAASLLLMWPLGHAGLALATSISGAVNLLALLWLLRRRTGPLGGRRLRR SCLKIAAAATIMGLLIGLTAYAPIWGEAGVARQTVRPLAALVVGMVSYLLAARLLGME ELAELWAVLGRRRR" misc_feature 1584513..1586027 /locus_tag="Deba_1416" /note="integral membrane protein MviN; Region: mviN; TIGR01695" /db_xref="CDD:162493" gene complement(1586054..1586374) /locus_tag="Deba_1417" /db_xref="GeneID:9493877" CDS complement(1586054..1586374) /locus_tag="Deba_1417" /note="KEGG: dol:Dole_0562 hypothetical protein; SPTR: A8ZU60 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807379.1" /db_xref="GI:302342850" /db_xref="GeneID:9493877" /translation="MPKQPVNQDDYVWVITVTKRFEDVAKDWEESLLGLADDQGNQFV PVTTEREAAQALLYKLPPEPDKMVERQVEAMNKDLVRQQAQEGGFDVYLVDGAGRILG QLEA" gene complement(1586503..1587288) /locus_tag="Deba_1418" /db_xref="GeneID:9493878" CDS complement(1586503..1587288) /locus_tag="Deba_1418" /note="COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR008258:IPR000189; KEGG: drm:Dred_2511 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: A4J7G8 Lytic transglycosylase, catalytic; PFAM: Transglycosylase SLT domain" /codon_start=1 /transl_table=11 /product="Lytic transglycosylase catalytic" /protein_id="YP_003807380.1" /db_xref="GI:302342851" /db_xref="GeneID:9493878" /translation="MAIAPTSGVSTNRPISGATASGQGHDLAALIRAASQRGDEKLLA KLAELMINQSAIRIGGGGAPSAAAQAPPAGQTAGARAKLYGLAPDTAVEVSSPAQAAP QVNAEPAAEDENLTPAAPQPGLAQRAYRQKLDDIVVRAARRHGVDPHLARAVVTAESD FNPASTSPAGAMGLMQLMPETARDLGVSDPYDPEQNVDGGVRYLGQMLSRFDGSVDKA LMAYNWGPSNVERQGRPPAETRAYLQKVMRLRQLYAEGFSARA" misc_feature complement(1586536..1586847) /locus_tag="Deba_1418" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature complement(order(1586623..1586625,1586680..1586682, 1586755..1586757,1586815..1586817)) /locus_tag="Deba_1418" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature complement(1586815..1586817) /locus_tag="Deba_1418" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 1587416..1588876 /locus_tag="Deba_1419" /db_xref="GeneID:9493879" CDS 1587416..1588876 /locus_tag="Deba_1419" /note="COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: ade:Adeh_3846 microcin-processing peptidase 2; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Q2IGA1 Putative uncharacterized protein; PFAM: Putative modulator of DNA gyrase" /codon_start=1 /transl_table=11 /product="peptidase U62 modulator of DNA gyrase" /protein_id="YP_003807381.1" /db_xref="GI:302342852" /db_xref="GeneID:9493879" /translation="MNGHHGPDDYFRRNFGVTDEDCRALLGRALARGGQWAELYFQHT LSNLIVSEDGRVDRAFTGVNLGLGVRVVKDERVGYAFCQALDMAAMLRAAESAAALAD GGQAMAHGARGLEIPASRLTPGLGLYPMTRPWHEAAHQERMDLLRRVEEGMRGADPRI VKTMAQLKDSTSWVMIVCSDGKKRADMRPRAGLRASCVAQQGRERQSNYHDISARAGL ELFSAQNLAQIAERAVTDTLRLFEARPLAAGQMPVVLAAGSAGILLHEAIGHGLEADF NRRGVSLYAGRLGQTVAGPQVTVIDDGTIDHAHGAINFDDEGSDSQRTVLVENGVLRS YLHDNMSAAWFNTRTTGSCRRQSYEFAPMPRMRATFMAPGPHKPEELVAAVDKGLYAV QFTNGQVDIGAGSFSFYVKSGWAIEKGRLAYPVRDVNIIGNGPEVLGRITMVADDLEL ARGGFVCGKLGQSVPVSQGMPTTLVSSINVGGTSEC" misc_feature 1587521..1588864 /locus_tag="Deba_1419" /note="Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]; Region: TldD; cl00398" /db_xref="CDD:193802" misc_feature 1587524..1588420 /locus_tag="Deba_1419" /note="Putative modulator of DNA gyrase; Region: PmbA_TldD; pfam01523" /db_xref="CDD:190021" gene 1588866..1590218 /locus_tag="Deba_1420" /db_xref="GeneID:9493880" CDS 1588866..1590218 /locus_tag="Deba_1420" /note="COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: afw:Anae109_3957 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A7HHD9 peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase" /codon_start=1 /transl_table=11 /product="peptidase U62 modulator of DNA gyrase" /protein_id="YP_003807382.1" /db_xref="GI:302342853" /db_xref="GeneID:9493880" /translation="MSVEPMIGRASLALEAARRAGAQQAAASVSDVRFVKATFRDGQL EQAKAAGKMSLGVRLYVDGRYGAHATSDLRDEALRAFVEGAVAMTRLLEPDPLRALPP KELTPTAPGPDLRLHDPAVAQAPTDFWLALARRMDELALERAQRGGVKLISRQGLAHG ESGLELLATSDGFMGVQEETSCYHGCTVALLDDQRGGARQLASWHHLGRALDQMTDRA RQEQVAAQAVERARRQLGGRPGPTGRGRLLVENSVAGRLVGEILGCLAGAALDQKQSY LADRLGQSLASPLLNMRDEPLEPGGLASRWFDGEGLAAQPRQVIEGGALRAYFLDTYY AKRLGLAPTAGSSTNLKFAPSRAGGFEQMLEDMPSGLAVTGFLGGNFNGTTGDFSFGV RGLWIENGRVAHPVEGMNIAGNYDDLWRSLAAVGDDPYAYSRLATPSLLFDEAMIAGA " misc_feature 1588950..1589849 /locus_tag="Deba_1420" /note="Putative modulator of DNA gyrase; Region: PmbA_TldD; pfam01523" /db_xref="CDD:190021" misc_feature 1588956..1590215 /locus_tag="Deba_1420" /note="Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]; Region: TldD; cl00398" /db_xref="CDD:193802" gene 1590285..1590908 /locus_tag="Deba_1421" /db_xref="GeneID:9493881" CDS 1590285..1590908 /locus_tag="Deba_1421" /note="KEGG: dps:DP0712 hypothetical protein; SPTR: Q6AQD2 Putative uncharacterized protein; PFAM: Putative exonuclease, RdgC" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807383.1" /db_xref="GI:302342854" /db_xref="GeneID:9493881" /translation="MGIFKGSATLTRYDVGGRRAEGWADFIDERVRTFAFREIENSAD EQSIGWVSAADFMDTGFAYAAYALDPYIVLGLRVDKRKLPAGVLKKYHRLELRKVKQM RDGQAISREERETLKEKVRLELLRRIPPSTQTYDVVWDTGRNRVWFGGSSRSALDLFE DFFRRCFNVELTPRVPYLAARALLVEPALIERLEQAAPWDLSGGEAA" misc_feature 1590354..>1590554 /locus_tag="Deba_1421" /note="Putative exonuclease, RdgC; Region: RdgC; cl01122" /db_xref="CDD:194044" gene 1590908..1591426 /locus_tag="Deba_1422" /db_xref="GeneID:9493882" CDS 1590908..1591426 /locus_tag="Deba_1422" /note="KEGG: dal:Dalk_3852 hypothetical protein; SPTR: B8FCC0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807384.1" /db_xref="GI:302342855" /db_xref="GeneID:9493882" /translation="MDVREALDQYLFVGQEFLTWLWFLGETRQQVVLESGEEVLLMLG DRLALGPAQGQEGVRVAVRGQEASLAEAREALRRGKLVEAMRLHLEINGEEFAASLRA ADLGLSALRLPPTAPGEDGVEGLFLERIALIDTLLGVIEGLLRMFLRQRLDAGQGPAL LAAMKAWAAGPE" gene 1591458..1591763 /locus_tag="Deba_1423" /db_xref="GeneID:9493883" CDS 1591458..1591763 /locus_tag="Deba_1423" /note="KEGG: GPRMTHL1; methuselah-like (AGAP006215-PA); SPTR: Q7PNU0 Methuselah-like (AGAP006215-PA)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807385.1" /db_xref="GI:302342856" /db_xref="GeneID:9493883" /translation="MLFQAMIVLALSLGLLLFITARGLGPMSQGETIVRYAALLAQDA PAARLVQTIMGDGPPQWAMGLCVVWERANVAGFWWVPLVLALIVWLVGRAARRRRGP" gene complement(1591760..1592188) /locus_tag="Deba_1424" /db_xref="GeneID:9493884" CDS complement(1591760..1592188) /locus_tag="Deba_1424" /note="KEGG: dma:DMR_34630 hypothetical protein; SPTR: C4XKL4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807386.1" /db_xref="GI:302342857" /db_xref="GeneID:9493884" /translation="MGQIKGEKQLANLLADWPEFQDELREAFVSLKDYAAKLPGVVME FIARPGVSNSLRLDLEPRPAGRQRPLLAMIDAVPMEGMMMLSVCFFADEVDDPEERGD LIPGGLMGSDGYCFDHDGQEPDMTDYLKRRIKAAHAKAVA" gene complement(1592239..1592772) /locus_tag="Deba_1425" /db_xref="GeneID:9493885" CDS complement(1592239..1592772) /locus_tag="Deba_1425" /note="KEGG: cyt:cce_1756 hypothetical protein; SPTR: B1WYT9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807387.1" /db_xref="GI:302342858" /db_xref="GeneID:9493885" /translation="MKYFRPMTIALTALALAVTITLTMTTASGADQAQQVKKVVEAEQ SGDYQKLLAACNAALKSGQLDWAHELYVQQNRAMAYYVQHKFDLSAADFSRIIDKRER VIAYYSLNADEQIYKVLRQMLTAAYLMRSIINEQIGKTQQALDDLEAYFKVSQVNPDK TDLERRRNLKKKLGQLK" gene complement(1592943..1593018) /locus_tag="Deba_R0027" /db_xref="GeneID:9493886" tRNA complement(1592943..1593018) /locus_tag="Deba_R0027" /product="tRNA-Ala" /db_xref="GeneID:9493886" gene 1593250..1593837 /locus_tag="Deba_1426" /db_xref="GeneID:9493887" CDS 1593250..1593837 /locus_tag="Deba_1426" /EC_number="4.2.1.19" /note="COGs: COG0131 imidazoleglycerol-phosphate dehydratase; InterPro IPR000807:IPR020565:IPR020568; KEGG: gyc:GYMC61_3155 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: imidazoleglycerol-phosphate dehydratase; SPTR: C9RV81 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase" /codon_start=1 /transl_table=11 /product="imidazoleglycerol-phosphate dehydratase" /protein_id="YP_003807388.1" /db_xref="GI:302342859" /db_xref="GeneID:9493887" /translation="MGRTATIKRETRETAISLRLDLDGRGEARIDTGVGFFDHMLTHI AFHGRFDLEVTAKGDLHVDAHHTVEDVGICLGQALRQALGDKLGVARYGGAFVPMDEA LAQVVVDLSNRPFMRLEAARLPGAVGAFDGQLAEEFLRALANAAGLTLHVILHYGSND HHMLEAAFKALGRALDQATAMDPRQGGVASTKGML" misc_feature 1593262..1593834 /locus_tag="Deba_1426" /note="Imidazoleglycerol-phosphate dehydratase; Region: IGPD; cd07914" /db_xref="CDD:153419" misc_feature order(1593286..1593288,1593364..1593366,1593376..1593378, 1593385..1593390,1593442..1593447,1593454..1593456, 1593520..1593522,1593544..1593549,1593586..1593588, 1593658..1593660,1593730..1593735,1593742..1593744) /locus_tag="Deba_1426" /note="putative active site pocket [active]" /db_xref="CDD:153419" misc_feature order(1593352..1593357,1593364..1593366,1593430..1593438, 1593442..1593447,1593619..1593633,1593640..1593642, 1593646..1593648,1593655..1593660,1593721..1593735) /locus_tag="Deba_1426" /note="4-fold oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153419" misc_feature order(1593364..1593366,1593442..1593447,1593454..1593456, 1593658..1593660,1593730..1593735,1593742..1593744) /locus_tag="Deba_1426" /note="metal binding residues [ion binding]; metal-binding site" /db_xref="CDD:153419" misc_feature order(1593517..1593519,1593523..1593525,1593529..1593537, 1593541..1593549,1593553..1593558,1593568..1593576, 1593586..1593588,1593592..1593594,1593694..1593696, 1593700..1593702,1593706..1593708,1593712..1593714, 1593766..1593768,1593775..1593777,1593793..1593795) /locus_tag="Deba_1426" /note="3-fold/trimer interface [polypeptide binding]; other site" /db_xref="CDD:153419" gene 1593867..1594523 /locus_tag="Deba_1427" /db_xref="GeneID:9493888" CDS 1593867..1594523 /locus_tag="Deba_1427" /note="KEGG: sat:SYN_00762 hypothetical protein; SPTR: Q2LVF6 Hypothetical membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807389.1" /db_xref="GI:302342860" /db_xref="GeneID:9493888" /translation="MAALLAVAGCQTTQPPQGKDQKKWEPRSVALLPVERVAPDADEP SRATCPLNGSLYTAGPMAQGAELSLAESLQKALKAHPPLRVVPVSQAGLAYDQLYGRQ AARPSLEQIAKLGAKLQVDAVLVGFVYRFTEREGSEASAEKPAAVTFNLLLVRSTDGM IAWSGVFDQQQQALSQNLLDLGQYMKYGLRWYSADELGQIGAEQALESFPWPQQAAVK " gene 1594626..1595354 /locus_tag="Deba_1428" /db_xref="GeneID:9493889" CDS 1594626..1595354 /locus_tag="Deba_1428" /EC_number="5.3.1.16" /note="COGs: COG0106 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR006062:IPR013785:IPR006063:IPR011060; KEGG: avn:Avin_04620 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Q0EX95 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase" /codon_start=1 /transl_table=11 /product="phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase" /protein_id="YP_003807390.1" /db_xref="GI:302342861" /db_xref="GeneID:9493889" /translation="MEAIPAVDLKGGRCVRLRQGRMDDETVFSDDPVAMAKRWADLGA QRLHVVDLDGAVQGRPANAAVIAAICRALEIPVQLGGGVRDLAGLTATLELGVDRVIL GTLAARQPEVALEAVERFPGRVVIGIDARDGKVAVSGWLETSELDYLEAAKRFDAPGV AAIVFTDISRDGMHSGPNLESTARLCAHVSRPVIAAGGVHDMADVRRMLAMAPLGLAG FITGRAIYEGSLDLAEALAACAAA" misc_feature 1594635..1595312 /locus_tag="Deba_1428" /note="HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-...; Region: HisA; cd04732" /db_xref="CDD:73394" misc_feature 1594635..1595309 /locus_tag="Deba_1428" /note="phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; Region: TIGR00007" /db_xref="CDD:161661" misc_feature order(1594647..1594649,1594767..1594769,1595010..1595012) /locus_tag="Deba_1428" /note="catalytic residues [active]" /db_xref="CDD:73394" gene complement(1595367..1596173) /locus_tag="Deba_1429" /db_xref="GeneID:9493890" CDS complement(1595367..1596173) /locus_tag="Deba_1429" /note="InterPro IPR007202; KEGG: dae:Dtox_3052 Fe-S cluster domain protein; PFAM: Fe-S cluster domain protein; SPTR: C8W3L8 Fe-S cluster domain protein; PFAM: Putative Fe-S cluster" /codon_start=1 /transl_table=11 /product="Fe-S cluster domain protein" /protein_id="YP_003807391.1" /db_xref="GI:302342862" /db_xref="GeneID:9493890" /translation="MIELVNHLEIYKILPKTNCRECRLPTCLAFAVAAMKHDKKLSDC PYLAKDVLESHRVRGAKAESSDDDYLAAMKVLQQKAAGLDLGQRAEIVGGQYADGRLT MRVLGKNFYVEDSGFVASQCHTNYWLAVPILNYVLSSAGREPVGEWLPLRDLKHGGED WWRLFGQRCEKPLKKLVDEYTGLMELIIDIFDGRPAPDQFNSDLAVIIHPLPKLPLLI CYWQSEEGMESSLNLFFDRSAEQNLIIDSIYTLCTGLVIMFEKIARTHGK" misc_feature complement(1596033..1596137) /locus_tag="Deba_1429" /note="Putative Fe-S cluster; Region: FeS; pfam04060" /db_xref="CDD:112857" misc_feature complement(1595397..1595927) /locus_tag="Deba_1429" /note="Domain of unknown function (DUF3786); Region: DUF3786; pfam12654" /db_xref="CDD:193131" gene complement(1596277..1597068) /locus_tag="Deba_1430" /db_xref="GeneID:9493891" CDS complement(1596277..1597068) /locus_tag="Deba_1430" /note="COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: sfu:Sfum_0112 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A0LEG3 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_003807392.1" /db_xref="GI:302342863" /db_xref="GeneID:9493891" /translation="MDLGIKDRTALIGGASRGLGLAVAQALAAEGCHVAICARSAGQL EEAAERIAQQHGVRALWRATDLGDGQSAHETGLWALEHFGAVDILVNNNGGPPPGQWA DFDQEHWRAAVEKTLFSAQAMTRAVLPKMLEQNWGRVINLTSISVKQPLPGLMLSNAV RAAVVGWAKSLADEVAPFGVTVNNVCPGWILTQRVQDILQARSQASGQSAEDILAGVL EGIPARRVGRPEEIGALAAFLASNQAAYITGASLAIDGGLCRAML" misc_feature complement(1596295..1597056) /locus_tag="Deba_1430" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557" /db_xref="CDD:180126" misc_feature complement(1596289..1597050) /locus_tag="Deba_1430" /note="putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; Region: BKR_like_SDR_like; cd05344" /db_xref="CDD:187602" misc_feature complement(order(1596490..1596495,1596499..1596510, 1596586..1596588,1596598..1596600,1596637..1596645, 1596724..1596726,1596787..1596795,1596871..1596879, 1596949..1596957,1597012..1597023,1597027..1597029)) /locus_tag="Deba_1430" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187602" misc_feature complement(order(1596586..1596588,1596598..1596600, 1596637..1596639)) /locus_tag="Deba_1430" /note="putative active site [active]" /db_xref="CDD:187602" gene complement(1597070..1599193) /locus_tag="Deba_1431" /db_xref="GeneID:9493892" CDS complement(1597070..1599193) /locus_tag="Deba_1431" /note="COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR017940:IPR 003593:IPR011527; KEGG: dal:Dalk_3747 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: B8FLT0 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807393.1" /db_xref="GI:302342864" /db_xref="GeneID:9493892" /translation="MAPPADFGYMEEGQLGRPYNMRLLGRLIAYLRPAKGLIVGAAVL VLIGTALNLALPYVTKTAIDGHIVRQALAVRPEKAAPDLAPDMAALNALGLLDAGGES FVAEAALRELDPRQSARLRAAGVIGAEPYYIAAAGPHAEQAARARPELFARGQDVWLI RAADLTKLPEAELKQLRGPDAHGLILLGALFAGLALGGLVVEYVQSMLLERAGQIMTF DLRQELYAHVLGRSSAFFSRNPLGKLVTRLTNDVQNINEMFRSTLVSLIQDMFLLVGI MATLFFLDVSLALVCLALTPLIAIMAWIFARQAREAFRQLQGHLGRINSWLSETMGGL AVVKLLGAEAAGARRFQRLNEQYFQAGMRQIKVFAVFMPLAELFSSLAVALILWHGGG QVIQDRLSLGALVAFLSYMQMFFRPVRDLAEKYNILQAAMASGERIFMLLDDDDALPE PAQQLSEAPGPGEARFRDVSFGYDPARPVVKNVDFVIPAGQSWAVVGPTGAGKTSLTA LLMRFYDPQSGAVEIDGVDLRRMSRRDIARRVAMAPQEVIILSGSIADNVIMGREDVG PAELRQALEISGAATFVDELPDGARTILGEGGRQLSAGQRQLLSLARALAGQPRVLVL DEATSSVDPASERLIQQALPRIMAGRTSLVVAHRLSTVRHADNILVMQRGRVVEQGTH EQLAAAGGLYARLARLEEIKAKGGA" misc_feature complement(1597940..>1598587) /locus_tag="Deba_1431" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(1597142..1598557) /locus_tag="Deba_1431" /note="ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]; Region: ATM1; COG5265" /db_xref="CDD:34862" misc_feature complement(1597142..1597810) /locus_tag="Deba_1431" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1597682..1597705) /locus_tag="Deba_1431" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1597223..1597225,1597316..1597321, 1597559..1597561,1597679..1597687,1597691..1597696)) /locus_tag="Deba_1431" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1597559..1597570) /locus_tag="Deba_1431" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1597364..1597393) /locus_tag="Deba_1431" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1597316..1597333) /locus_tag="Deba_1431" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1597298..1597309) /locus_tag="Deba_1431" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1597217..1597237) /locus_tag="Deba_1431" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(1599195..1600943) /locus_tag="Deba_1432" /db_xref="GeneID:9493893" CDS complement(1599195..1600943) /locus_tag="Deba_1432" /note="COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR017940:IPR 003593:IPR011527; KEGG: dal:Dalk_3748 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: B8FLT1 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807394.1" /db_xref="GI:302342865" /db_xref="GeneID:9493893" /translation="MQSANQIVASLAKRHAWGLIVGFAALLAVDVLQLWTPRLIKSAV DQLTLGQATQSSLAWLAAAVLGLAAAISLLRLLWRPLLFGFARRVETAIRQRIFEHVQ QMHLGYLDDQPPGEIMARATNDLNNIRMSLGMGLVAAVDGAIMGAAAIGFMLYLSPTL TILALIPMPLIAIAGRMVGRQMHGGFMAVQESFARMTEQTREALSAIGLVKAFALARR EEQRMAQAGREYFAQNMRLARLMAVLFPLSSFFTSLSLAVVIGAGGPLAVFGQITAGD FVAFTAYLGLLTWPMMALGWVISLMQRGRASMQRVSEIITARPAVSDPAQPEALDPAT PLDLEIRDLSFRYPGAANPALDRASLFVEAGRATALVGPVGCGKSTVLRLLTRLYDPP PGAALIQGRDVRALAQDELRSRVSLSPQEAFVFSTSVRENLALGRPQASDDELWAALR AADLAEDIRALPQGLESELGERGHTLSGGQRQRLALARILLIDPPALLLDDPLSAVDT ATERRILANLAELRRGKTTLLVSHRLASVAFAARIFVMDHGRVVESGDHATLVAAGGL YQSLFAEQALLAELEG" misc_feature complement(1599231..1600895) /locus_tag="Deba_1432" /note="ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132" /db_xref="CDD:31327" misc_feature complement(1600071..>1600682) /locus_tag="Deba_1432" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(1599231..1599932) /locus_tag="Deba_1432" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1599807..1599830) /locus_tag="Deba_1432" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1599348..1599350,1599441..1599446, 1599684..1599686,1599804..1599812,1599816..1599821)) /locus_tag="Deba_1432" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1599684..1599695) /locus_tag="Deba_1432" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1599489..1599518) /locus_tag="Deba_1432" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1599441..1599458) /locus_tag="Deba_1432" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1599423..1599434) /locus_tag="Deba_1432" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1599342..1599362) /locus_tag="Deba_1432" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(1600950..1602392) /locus_tag="Deba_1433" /db_xref="GeneID:9493894" CDS complement(1600950..1602392) /locus_tag="Deba_1433" /note="COGs: COG0526 thiol-disulfide isomerase and thioredoxins; InterPro IPR000866:IPR017936:IPR012335:IPR012336; KEGG: rmr:Rmar_1898 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: D0MJX3 Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen" /protein_id="YP_003807395.1" /db_xref="GI:302342866" /db_xref="GeneID:9493894" /translation="MKTPRIWLAAALIALCALGAQPSWSMDFNRPTLEGQALSLSQFR GRVVLLDFFATWCGPCTQAMPKLRQLQSAYGHAGLSIVGYSVDSGGLEAVGPYAARNR LNFPVVLGNAAEAKRIAGVTALPTTVIIDPEGRVAARFEGPVSKERLIGVIKPYLREG AAPAPPAAKVELRANGANRFNRVWVTPNMLFQGQLGLFVHTVVDVSDLYTKQGLWLGI TMTPETIAPDGSTRPQGPPVTKYQRVDEAWRKHFILFLTCGQMPPMTGRGAYRSQIFL LGPGQKVIERSEDFWISDECQTGAAGSPSQFEEAKMDFGGGGPRKTGMVGKWRWAGQD RLRGAWLTGPTVHQGRSGLFVHVEADFSQDDLKRGLALGLDFAGAAQGRSATPRAESR LVQLVEADNPGYYIMFIGCDQLPAQVAGGDGAMWVSLLAGPERQELERSGVFIIDEAI CDGRAASQTSGGRQRRSGMAPGDDSPWGGF" misc_feature complement(1601967..1602314) /locus_tag="Deba_1433" /note="TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing...; Region: TlpA_like_family; cd02966" /db_xref="CDD:48515" misc_feature complement(order(1602213..1602215,1602222..1602224)) /locus_tag="Deba_1433" /note="catalytic residues [active]" /db_xref="CDD:48515" gene 1602583..1604571 /locus_tag="Deba_1434" /db_xref="GeneID:9493895" CDS 1602583..1604571 /locus_tag="Deba_1434" /EC_number="3.1.13.1" /note="COGs: COG0557 exoribonuclease R; InterPro IPR001900; KEGG: dal:Dalk_3638 exoribonuclease II; PFAM: ribonuclease II; PRIAM: exoribonuclease II; SPTR: B8FGU6 exoribonuclease II; PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases" /codon_start=1 /transl_table=11 /product="exoribonuclease II" /protein_id="YP_003807396.1" /db_xref="GI:302342867" /db_xref="GeneID:9493895" /translation="MSDPVGQLVEFIDKNRLCLAFVQSAKKTKLNVLTSADKELSLPQ GRVLLMTAGGGLAGRNRQALVERLREVEVRREGLAQDVDVAGLWELVAEEAEPLSLAD LAGLAHSGPLEGDHLSATLRALFNERWHFKMAGEQFVPLSAEQLEQKQLQSQREDARR EQVDAAVDYLRGLADNGPYPPAPDGLLDLLADLVVFEDDAPNLKRAKEIVALAELGGR KNVFDLLVRLGRFSPHENLPLLKDGVARAFDHAALAAAAQVDLEPALEDKTRRDLTDM HVFTIDGAFTTDFDDALSFEPEPGGGGVLGVHITDAGAVLAPDSPLDLEARGRGTSIY MPDDRIPMLPPSLSEDALSLRQDQLRPAISTLARLDADGQVLDYEIVRSVIRVARRIT YDEADYLLDSDPRLKGMHAICQALKAARGRAGAYFLPLPEVIVGVDELGQVYVRRIDR EGASREMVAETAILANWLAARHLRDHEAPCLYRRQSPPAEPFREGQPEDIYLHFSQRR LLNPADLTTKPGLHSSLGVDPYTQVTSPIRRYFDLIVQRQLGAVLAGRGPVYAKSRLK ELAQEVDATVRRAGRARNMRQRYWLLRWLEARKGQELDALVMEPQMRRWSILLTDIMM LTSLPRGGGQPEFKPGQALRVVVEKADAFHEILRVRLA" misc_feature 1603390..1604241 /locus_tag="Deba_1434" /note="RNB domain; Region: RNB; pfam00773" /db_xref="CDD:189712" gene complement(1604579..1605049) /locus_tag="Deba_1435" /db_xref="GeneID:9493896" CDS complement(1604579..1605049) /locus_tag="Deba_1435" /note="COGs: COG3467 flavin-nucleotide-binding protein; InterPro IPR011576:IPR012349:IPR009002; KEGG: dma:DMR_07650 hypothetical protein; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: C4XJ92 Putative uncharacterized protein; PFAM: Pyridoxamine 5'-phosphate oxidase" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase-related FMN-binding protein" /protein_id="YP_003807397.1" /db_xref="GI:302342868" /db_xref="GeneID:9493896" /translation="MIAMRKPHKQITDQARIEAILDQAPVLRLAMCRDGQPYVTPLNF GRLGQRLYVHTGRQGLKIDFIAANPRVCFEVTSLAEPAPGPTPCQWDWRYRSVIGFGR AVVVDDPAEKQAGLAAIVAHYDPEARPDFPPEKMALALVLRIEVESLTAKANLA" misc_feature complement(1604582..1605046) /locus_tag="Deba_1435" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" gene complement(1605046..1606176) /locus_tag="Deba_1436" /db_xref="GeneID:9493897" CDS complement(1605046..1606176) /locus_tag="Deba_1436" /note="COGs: COG0438 glycosyltransferase; KEGG: csa:Csal_2123 glycosyl transferase, group 1; SPTR: A6G2P4 glycosyl transferase, group 1; manually curated; PFAM: glycosyl transferases group 1; Domain of unknown function (DUF3524)" /codon_start=1 /transl_table=11 /product="glycosyl transferase, group 1" /protein_id="YP_003807398.1" /db_xref="GI:302342869" /db_xref="GeneID:9493897" /translation="MQATRSGQSGPRLLFVEPYLTASHRAFAQGLMAHVPARWTLLGL PGRHFRWRMRGAALFLAQEAAAALSQPWDGLVCSSMLGLAELRGLAPALANTPALAVF HENQLAYPAPGAADENLRRRDLYLAFSNLATAKAARRVAFNSQFHRRQFLEAARNTLA RLPDMIPQGLVDELAQKSLALPVPVEDAEAAPALAARQGPRAGRLRLLWNHRWEHDKG PEELFAALFALADQGLDFHAAIMGPRPAAWPKVFDQAADRLGERLAHIGPQDRREDYW RWLGWADVVVSTARQEYFGLSVAEAVWAGCMPLVPDALVYPELYPARCRYQPGQLAPA LAVLMARPASVRAEDWRPLAQSFTWRAQAGAWRQLITEVVGR" misc_feature complement(1605643..1606146) /locus_tag="Deba_1436" /note="Domain of unknown function (DUF3524); Region: DUF3524; pfam12038" /db_xref="CDD:152473" misc_feature complement(1605259..>1605537) /locus_tag="Deba_1436" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cd01635" /db_xref="CDD:99959" gene complement(1606194..1607000) /locus_tag="Deba_1437" /db_xref="GeneID:9493898" CDS complement(1606194..1607000) /locus_tag="Deba_1437" /note="COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR001451:IPR011004; KEGG: dps:DP2923 bifunctional GlmU protein; SPTR: C0GCM6 Bifunctional GlmU protein" /codon_start=1 /transl_table=11 /product="bifunctional GlmU protein" /protein_id="YP_003807399.1" /db_xref="GI:302342870" /db_xref="GeneID:9493898" /translation="MIAPADLFNLEGLTHAQLFDGLDQVWLALDRIQNLSAQLAERDG HTGRVLRVSFGEVMPITVVLHRGTVYEDNFCLLGGDPTKGGMCVELAGCKVYDAVVVH AGAAIMSDDIHLAPGVKVEPGALLKGPCHLGPGAEVRQGAYIRGAALVGAGCVVGHAT ELKNAAMLDGAKAGHFAYLGDSILGRDCNLGAGTKLANLKIVDRPHRLVVGEQTHVVQ RRKFGAIMGDGCETGCNSVTNPGVILGRRCMVAPCVSVAGGYYKPRAIIR" misc_feature complement(1606230..1606694) /locus_tag="Deba_1437" /note="Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160" /db_xref="CDD:193687" misc_feature complement(order(1606230..1606232,1606236..1606238, 1606242..1606244,1606254..1606256,1606284..1606286, 1606290..1606295,1606308..1606310,1606410..1606412, 1606416..1606418,1606434..1606436,1606461..1606463, 1606467..1606469,1606479..1606481,1606485..1606487)) /locus_tag="Deba_1437" /note="putative trimer interface [polypeptide binding]; other site" /db_xref="CDD:100038" misc_feature complement(order(1606230..1606232,1606248..1606250, 1606284..1606286,1606299..1606304,1606308..1606310)) /locus_tag="Deba_1437" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:100038" gene complement(1607026..1607805) /locus_tag="Deba_1438" /db_xref="GeneID:9493899" CDS complement(1607026..1607805) /locus_tag="Deba_1438" /note="COGs: COG0107 imidazoleglycerol-phosphate synthase; InterPro IPR006062:IPR013785:IPR004651:IPR011060; KEGG: dol:Dole_0783 imidazole glycerol phosphate synthase subunit HisF; PFAM: histidine biosynthesis protein; SPTR: A8ZVD2 Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit" /codon_start=1 /transl_table=11 /product="imidazoleglycerol phosphate synthase, cyclase subunit" /protein_id="YP_003807400.1" /db_xref="GI:302342871" /db_xref="GeneID:9493899" /translation="MLSKRIIPCLDVRDGKLTKGIKFEGNVDIGDPVEMAAFYYEQGA DELVFYDITASHERRGIMLEVVRRVAETIFIPFSVGGGLAGLNDMYDVLAAGAEKISV NSQAVKNPDIIGEGAKRFGNQCVVLGMDVLRVDKTPQIPSGYEIVIHGGRKRMGLDAV QWARQAQDLGAGEICLNSIDADGTRQGYELDLTRLISQAVTIPVIASGGAGEPRHLAD VLLQAHADAALIASMTHYGHYTIAQIKTYLAAQGVKVRGHW" misc_feature complement(1607038..1607805) /locus_tag="Deba_1438" /note="Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]; Region: HisF; COG0107" /db_xref="CDD:30456" misc_feature complement(1607053..1607796) /locus_tag="Deba_1438" /note="The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-; Region: HisF; cd04731" /db_xref="CDD:73393" misc_feature complement(order(1607110..1607115,1607179..1607187, 1607257..1607262,1607275..1607277,1607356..1607358, 1607416..1607418,1607422..1607424,1607494..1607499, 1607560..1607562,1607656..1607658,1607749..1607751)) /locus_tag="Deba_1438" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73393" misc_feature complement(order(1607128..1607130,1607203..1607205, 1607287..1607289,1607437..1607439,1607509..1607514, 1607521..1607523,1607578..1607580,1607584..1607586, 1607593..1607595,1607605..1607607,1607671..1607673, 1607686..1607688)) /locus_tag="Deba_1438" /note="glutamase interaction surface [polypeptide binding]; other site" /db_xref="CDD:73393" gene complement(1607795..1608442) /locus_tag="Deba_1439" /db_xref="GeneID:9493900" CDS complement(1607795..1608442) /locus_tag="Deba_1439" /note="COGs: COG0118 Glutamine amidotransferase; InterPro IPR000991:IPR016226:IPR017926:IPR010139; KEGG: dal:Dalk_3651 imidazole glycerol phosphate synthase subunit HisH; PFAM: glutamine amidotransferase class-I; SPTR: B8FGV9 Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase, glutamine amidotransferase subunit" /protein_id="YP_003807401.1" /db_xref="GI:302342872" /db_xref="GeneID:9493900" /translation="MIAIINYEAGNLTSVERALRGLGADCLITQDLARIADAERVIFP GVGAAGSAAESMRRLGLDRALRQALAAGKPIMGICLGTQIIFESSEEGDAVCLGLLPG QTIRFADGLTDEDGRAIKIPHMGWNSVRLLRPHPVFAGVPADAEFYFVHSYHPAPARA EDIVGQTFHGRDFASVVARDNLVAMQFHPEKSGRPGLQILRNFIAWDGKEAADAI" misc_feature complement(1607813..1608442) /locus_tag="Deba_1439" /note="imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13141" /db_xref="CDD:183868" misc_feature complement(1607831..1608439) /locus_tag="Deba_1439" /note="Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748" /db_xref="CDD:153219" misc_feature complement(order(1607873..1607875,1607879..1607881, 1608200..1608214,1608302..1608325)) /locus_tag="Deba_1439" /note="putative active site [active]" /db_xref="CDD:153219" misc_feature complement(1608302..1608325) /locus_tag="Deba_1439" /note="oxyanion strand; other site" /db_xref="CDD:153219" misc_feature complement(order(1607873..1607875,1607879..1607881, 1608206..1608208)) /locus_tag="Deba_1439" /note="catalytic triad [active]" /db_xref="CDD:153219" gene complement(1608464..1609207) /locus_tag="Deba_1440" /db_xref="GeneID:9493901" CDS complement(1608464..1609207) /locus_tag="Deba_1440" /note="COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR001440:IPR019734:IPR013026:IPR011990; KEGG: dsa:Desal_2816 tetratricopeptide TPR_2 repeat protein; PFAM: hypothetical protein; SPTR: C6BZZ7 hypothetical protein; PFAM: Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807402.1" /db_xref="GI:302342873" /db_xref="GeneID:9493901" /translation="MASEGAPIPKDGDIYLEKHQGKVGTGDTERNSVIETYWVAHPKD GGMVMLELLDMNHQPSGYKETVDLAEFAKRFRHVPDFHPEQLSPKERQADRHSARAER HLAEQEFLSAEYEFNRSLKVDEQNVRANFGLGQTYVAMGEPEKAKEQFKKLVEIDALL DPRHKHIFNEFGMQLRKLGMFAEAVKHYHKALQIERYDENLWFNLGRALIDGGLVEKG KAALDRALKLNPNMPEAKVLLAALEKKGR" misc_feature complement(1608737..>1608943) /locus_tag="Deba_1440" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cl02429" /db_xref="CDD:194311" misc_feature complement(order(1608788..1608793,1608800..1608805, 1608812..1608817,1608893..1608898,1608905..1608910, 1608914..1608919)) /locus_tag="Deba_1440" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1608749..1608751,1608758..1608760, 1608770..1608772,1608806..1608808,1608851..1608853, 1608860..1608862,1608872..1608874,1608908..1608910)) /locus_tag="Deba_1440" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(1608515..1608817) /locus_tag="Deba_1440" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(1608572..1608577,1608584..1608589, 1608596..1608601,1608677..1608682,1608689..1608694, 1608698..1608703,1608800..1608805,1608812..1608817)) /locus_tag="Deba_1440" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1608533..1608535,1608542..1608544, 1608554..1608556,1608590..1608592,1608635..1608637, 1608644..1608646,1608656..1608658,1608692..1608694, 1608749..1608751,1608758..1608760,1608770..1608772, 1608806..1608808)) /locus_tag="Deba_1440" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(1609223..1609855) /locus_tag="Deba_1441" /db_xref="GeneID:9493902" CDS complement(1609223..1609855) /locus_tag="Deba_1441" /note="COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: bcv:Bcav_2296 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: C5BVU6 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase" /codon_start=1 /transl_table=11 /product="CDP-alcohol phosphatidyltransferase" /protein_id="YP_003807403.1" /db_xref="GI:302342874" /db_xref="GeneID:9493902" /translation="MIQRKKNHVGNTGLQAGVAAMVPMWISPNMLTIMRICMTLCILL VDVFAASLWWVLVMGFCAGMSDFVDGAVARQRGQITQLGSYLDPLADKILGAVVGFIL WRRGVLPTLPLALVLAAEGHALLLPILHVLRRRFQGRPITPLPKVRANVWGKWKFGAL AWGMAFMMLGALLDWPFGLGFGAFGVWLAVVLGWIAFARYTYDWFKEQWN" misc_feature complement(1609235..1609804) /locus_tag="Deba_1441" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene complement(1609967..1611859) /locus_tag="Deba_1442" /db_xref="GeneID:9493903" CDS complement(1609967..1611859) /locus_tag="Deba_1442" /note="COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR002218:IPR020595:IPR013027:IPR004416; KEGG: dba:Dbac_2050 glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; SPTR: C7LNG7 Glucose inhibited division protein A; TIGRFAM: glucose inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A" /codon_start=1 /transl_table=11 /product="glucose inhibited division protein A" /protein_id="YP_003807404.1" /db_xref="GI:302342875" /db_xref="GeneID:9493903" /translation="MIALPPERFEVIVVGGGHAGCEAALAAARMGRQTLLITINLEHL AALSCNPAVGGLAKGHLVREIDALGGEMAKNTDATGIQFRLLNQGKGPAVWSSRAQVD MDRYPRRMRKVILNQPRLWVLDAKARGLIVQSGRVGGVITDRGQSVSARAVVLTTGTF LRGLIHVGLKNWPAGRMGDPAANALSDQLRALGLNLGRLKTGTCPRLDARSVDLASLP AQPGDETPRMFSFLSQGPTLEQRPCWITHTTERTHRIIRGGLHESPMYAGVITGVGAR YCPSIEDKVVRFPQRESHQIFLEPQGLDSGLIYPNGIPTSLPLAVQEAMVHSLPGCEN AFIVRPGYAIEYDYADPQDLKPTLESKIAPGLYLAGQINGTSGYEEAAAQGLWAGINA ALAVRGEGAFAPDRSQAYMAVLVDDLITKGTREPYRMFTSRAEYRLSLREDNADLRLT ELGRAVGLVDDERWAAFSAKQAALGQARQLLDAVRVNPSRQVLEALSELDTGALSRPL SAAQVLRRPGMDLAMLARLDPALEPLTTLPPEVAEQLRIEASYAGYVEQERQQVELFR AREAQVIPPELDYAQIPGLSREVVEKLARVRPANIGQAGRISGVTPAALAIVSLHATR LQGRGD" misc_feature complement(1609997..1611847) /locus_tag="Deba_1442" /note="NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; cl11520" /db_xref="CDD:187089" misc_feature complement(1609997..1611844) /locus_tag="Deba_1442" /note="Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]; Region: GidA; COG0445" /db_xref="CDD:30794" gene complement(1611856..1612668) /locus_tag="Deba_1443" /db_xref="GeneID:9493904" CDS complement(1611856..1612668) /locus_tag="Deba_1443" /note="COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: pwa:Pecwa_2047 protein of unknown function DUF218; PFAM: protein of unknown function DUF218; SPTR: D0KBS4 Putative uncharacterized protein; PFAM: DUF218 domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807405.1" /db_xref="GI:302342876" /db_xref="GeneID:9493904" /translation="MADVLFSLKKIAGLLLLPVGLVCLLWLTGALHLPWPGKRRRGLT LILLAGALLAALSLPATGRALLAPLERQAGPYAQPMALMAAGAMDIVVLGGAQQAGEL SAADRLSAASLRRVAEGVRLWRGVPGARLIFSGEASDGRSSVAADMAEMATRLGAPSA SIVVDEASRDTADQAAILARDLGARPFALVTSAAHMPRALTMFRAQGLRPLPAPADFR CATGDDPAYRRFMPQAQGLLMSQDAIYEYLGLMWAWLHDFWAAERPRAADAS" misc_feature complement(1611919..1612401) /locus_tag="Deba_1443" /note="YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been...; Region: YdcF-like; cd06259" /db_xref="CDD:99750" misc_feature complement(order(1611931..1611933,1612075..1612077, 1612084..1612086,1612096..1612098,1612147..1612149, 1612156..1612158)) /locus_tag="Deba_1443" /note="putative active site [active]" /db_xref="CDD:99750" gene 1613317..1613949 /locus_tag="Deba_1444" /db_xref="GeneID:9493905" CDS 1613317..1613949 /locus_tag="Deba_1444" /note="InterPro IPR002842; KEGG: bfs:BF2749 V-type ATP synthase subunit E; PFAM: H+transporting two-sector ATPase E subunit; SPTR: D0TNN5 ATP synthase subunit E" /codon_start=1 /transl_table=11 /product="H+transporting two-sector ATPase E subunit" /protein_id="YP_003807406.1" /db_xref="GI:302342877" /db_xref="GeneID:9493905" /translation="MADAKLQELIDVLRKQGVESGEDSARQIVASAEKEAERILAQAR TEAEAVVTKAQSEADNLKKRLESSLEIAASQFVTNLKSQVEESLLVLPLRQKLDENLA DESLLKGLIAKLVENYSAGSPEDDMKIILGKDAGESLKSYVLGLGAKVKLSQDLESYG ARYGLVVELGSGKVRVDFTDEAFLALFLRFLSPAFREMFRNVKVGKAAQQ" misc_feature 1613320..1613910 /locus_tag="Deba_1444" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" misc_feature 1613377..1613907 /locus_tag="Deba_1444" /note="ATP synthase (E/31 kDa) subunit; Region: vATP-synt_E; pfam01991" /db_xref="CDD:110943" gene 1613946..1614707 /locus_tag="Deba_1445" /db_xref="GeneID:9493906" CDS 1613946..1614707 /locus_tag="Deba_1445" /note="KEGG: bth:BT_1300 hypothetical protein; SPTR: A7V2L2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2764)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807407.1" /db_xref="GI:302342878" /db_xref="GeneID:9493906" /translation="MKYYFLATYLPELQRDDKKVRVSLAELLGEPQAYAREDWADIEL VLLAGDIFVLERLLTGKPAEVEHTLYGVEFWREQIKSPKEGPAFLVTFMEQLEPGRLA SPKVVEDLYAAYFNHAMATARNGLLRNYLAFERDLRNILAALRAREKNLVVTDHLVGE GELIENIARSRAEDFGLGGDYPFMEKLLAAKDPQQMQDAHEQILWNFLDEEAGQDPFA FDALLAYLLKLTMLEKRLALNEDEAMARVRRWEAL" misc_feature 1613949..1614608 /locus_tag="Deba_1445" /note="Protein of unknown function (DUF2764); Region: DUF2764; pfam10962" /db_xref="CDD:151409" gene 1614709..1616454 /locus_tag="Deba_1446" /db_xref="GeneID:9493907" CDS 1614709..1616454 /locus_tag="Deba_1446" /note="COGs: COG1155 H+-ATPase subunit A; InterProIPR004100:IPR000194:IPR020003:IPR019825:IPR 018118:IPR000793; KEGG: bbu:BB0094 V-type ATP synthase subunit A; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SPTR: C0T025 V-type ATP synthase alpha chain; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain" /codon_start=1 /transl_table=11 /product="H+transporting two-sector ATPase alpha/subunit beta central region" /protein_id="YP_003807408.1" /db_xref="GI:302342879" /db_xref="GeneID:9493907" /translation="MNATGKVLAAYGNLVTVQFDSNVRQNEVAYIVTADGRMKSEVIR VRGDQCYAQVFEDTRGIKVGDAVEFTGDLLVVELGPGILQQIYDGLQNPLPKLSEATG LFLKRGVYIDPLDRQVKWDFTPKAKVGDVVGAGDMLGSVPEGKFEHKIFVPFNFIGKA KIVEMAAKGDYTVVDTIAVVEDQSGARQNLCMMQRWPIKIALKDYEERLLPVEPLVTG CRIIDSFYPVAKGGTACIPGPFGSGKTVLQQIISRYADVDVIIVAACGERAGEVVETL REFPHLEDPYTGRTLMERTVIICNTSSMPVAAREASIYTAITIGEYYRQMGLDVLLLA DSTSRWAQALREMSGRLEEIPGEEAFPAYLQSRIAEFYERAGFVRLKSGETGSVSVIG TVSPAGGNFEEPVTQGTLAVVGAFLGLTWARSNARRFPAIDPLISWSKYLDQMRDSLD KLDPAWIASVAKAQRMIFDGNEIKKRMDVVGEEGTSISDFIIYLKAEFLDSVYLQQNA FDKVDAYNTMERQVYTFKKVLELMDKEIKVTDKDEARDLFFRLAALFKNMNASAMQSE EFAKFESQINDFIGS" misc_feature 1614709..1616448 /locus_tag="Deba_1446" /note="V-type ATP synthase subunit A; Provisional; Region: PRK04192" /db_xref="CDD:179776" misc_feature 1614727..1614921 /locus_tag="Deba_1446" /note="ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874" /db_xref="CDD:145823" misc_feature 1614925..1616031 /locus_tag="Deba_1446" /note="V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi...; Region: V_A-ATPase_A; cd01134" /db_xref="CDD:30000" misc_feature 1615420..1615443 /locus_tag="Deba_1446" /note="Walker A motif/ATP binding site; other site" /db_xref="CDD:30000" misc_feature 1615699..1615713 /locus_tag="Deba_1446" /note="Walker B motif; other site" /db_xref="CDD:30000" gene 1616458..1617777 /locus_tag="Deba_1447" /db_xref="GeneID:9493908" CDS 1616458..1617777 /locus_tag="Deba_1447" /note="COGs: COG1156 H+-ATPase subunit B; InterPro IPR004100:IPR000194; KEGG: bre:BRE_95 V-type ATP synthase subunit B; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SPTR: A6PSE7 Sodium-transporting two-sector ATPase; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain" /codon_start=1 /transl_table=11 /product="H+transporting two-sector ATPase alpha/subunit beta central region" /protein_id="YP_003807409.1" /db_xref="GI:302342880" /db_xref="GeneID:9493908" /translation="MRSIITKIKEITGNIATLEASGVGLGELAVVQSPGQSTLGQVIR VNQENVTIQVFGGTKGISTSDQVRFLGHPMQVKYGPSLMGRIFNGSGVPIDGGPEPVE EEIAIGGPSFNPANRIIPQQMIRTNIPMIDLFNSLVVSQKLPIFSIPGEPYNQLLARV GMQAEADIIILGGMGLKFDDFTFFKRTFEESGVMNRVIMFIHQASDPVVECLLVPDMA LAVAERFAEAGQRVLVLLTDMTNFADSLKEISISMEQIPSNRGYPGDLYSQLASRYEK AVDIEGAGGITLLAVTTMPGDDVTHPVPDNTGYITEGQFYLRHGVIDPFGSLSRLKQN VVGKVTRKDHNDIMNTMIRLYSDCRESRNKIAMGFKVSKWDETLLAYGKDFETELMDL NVNLPIEQALDRCWTILARHFDPVQTGLKQELVDQFWPKENKEAQAA" misc_feature 1616458..1617762 /locus_tag="Deba_1447" /note="V-type ATP synthase subunit B; Provisional; Region: PRK02118" /db_xref="CDD:179373" misc_feature 1616479..1616670 /locus_tag="Deba_1447" /note="ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874" /db_xref="CDD:145823" misc_feature 1616674..1617450 /locus_tag="Deba_1447" /note="V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the...; Region: V_A-ATPase_B; cd01135" /db_xref="CDD:30001" misc_feature 1616896..1616919 /locus_tag="Deba_1447" /note="Walker A motif homologous position; other site" /db_xref="CDD:30001" misc_feature 1617160..1617171 /locus_tag="Deba_1447" /note="Walker B motif; other site" /db_xref="CDD:30001" gene 1617782..1618396 /locus_tag="Deba_1448" /db_xref="GeneID:9493909" CDS 1617782..1618396 /locus_tag="Deba_1448" /note="COGs: COG1394 H+-ATPase subunit D; InterPro IPR002699; KEGG: fsu:Fisuc_2839 V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit; SPTR: Q1Q3P2 Putative uncharacterized protein; TIGRFAM: V-type ATPase, D subunit; PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D" /codon_start=1 /transl_table=11 /product="V-type ATPase, D subunit" /protein_id="YP_003807410.1" /db_xref="GI:302342881" /db_xref="GeneID:9493909" /translation="MADKPKLNKTALKGQRDALSKYQKFLPILQLKKMQLQLVIRQLE PVVEKQRQDMERAVGGIKPWAALLTDQAADLDGLLVVKDVLTDRDNIAGVEVPEFREV TFEEKPYSLFATPPWLDMAVAALRRLIALREELRVLMEKERILREELRTTTQRVNLFE KKLIPELKENIRKIKIFLGDEETSAVGRAKLAKAKLVQQQEVAS" misc_feature 1617782..1618384 /locus_tag="Deba_1448" /note="ATP synthase subunit D; Region: ATP-synt_D; cl00613" /db_xref="CDD:193884" gene 1618393..1620165 /locus_tag="Deba_1449" /db_xref="GeneID:9493910" CDS 1618393..1620165 /locus_tag="Deba_1449" /note="COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: bvu:BVU_3562 V-type ATP synthase subunit I; PFAM: V-type ATPase 116 kDa subunit; SPTR: A0P1I3 V-type ATP synthase subunit I; PFAM: V-type ATPase 116kDa subunit family" /codon_start=1 /transl_table=11 /product="V-type ATPase 116 kDa subunit" /protein_id="YP_003807411.1" /db_xref="GI:302342882" /db_xref="GeneID:9493910" /translation="MILPMTKITFLGLGSQKEAFLKRLQEVGVTHLILPAETEEPQEV ARELQKVGDAKKFLARRLTDKKATPSQNDYEAVCARRDALAHEEASLQTELAILKKDK ALMLPWGDFDPASLGALEAKGFKAYFYRLGQSAFAGLDLSGLHSFVVSDTPGEVALVV FGQAQPELGVLPEKLPAKGLSRIEREIEAANQRLTAIQAEYAELARNLKTLEKAEASL TDELTYQRAVLNTDGELGDKLFLVRCWSPMAADELVKKIGPEFAFHHYAEEPQEGDRV PVLLSNKPAFAPGEDLVGIYSHPNYSDFDPSGLVLWCFTIFYGMIIGDAGYGSVLLLI SVLLQLKVKSESPMFKRMLRLSYMLSCSTIFFGLISASYFGVALSDDSPLKSIMLMDL GTKEGQNHVMLVSCVMGMVHLTVALLIKLYRTKDLAALGWILVTWGGYLLFDGKVAGG PYGEIGQWTLIAGFALVLLFTSNSRNVIIRLAVGLNGVLGVVQLFADVLSYMRLFALG LATMYMCQTFNLLGGMVFDAIPWAWLGALPAVLVLVIGHSINIVLGIMGGVVHGLRLN FLEWYRWCFEGDGLPFKPFRQVAN" misc_feature 1618393..1620150 /locus_tag="Deba_1449" /note="V-type ATP synthase subunit I; Validated; Region: PRK05771" /db_xref="CDD:180249" misc_feature <1618714..1618935 /locus_tag="Deba_1449" /note="Heme-binding protein A (HasA); Region: HasA; pfam06438" /db_xref="CDD:148192" gene 1620203..1620640 /locus_tag="Deba_1450" /db_xref="GeneID:9493911" CDS 1620203..1620640 /locus_tag="Deba_1450" /note="InterPro IPR002379; KEGG: pcu:pc1676 V-type ATP synthase subunit K; PFAM: H+transporting two-sector ATPase C subunit; SPTR: Q6MAJ9 Putative V-type sodium ATP synthase subunit K (NtpK); PFAM: ATP synthase subunit C" /codon_start=1 /transl_table=11 /product="H+transporting two-sector ATPase C subunit" /protein_id="YP_003807412.1" /db_xref="GI:302342883" /db_xref="GeneID:9493911" /translation="MDFATAMGYLGCAFAIGIPAIGSAIGVATAGAASHGAMAKVEEG HGKFIGISAAPSSQTIYGLILMFVLMGKVANSGLAVLGIGIFCGLACAASAIYQGKVA ATAILASSKKQEIFGKCFAAAGIVESFAIFALVAGLVMAGNLQ" misc_feature 1620434..1620631 /locus_tag="Deba_1450" /note="ATP synthase subunit C; Region: ATP-synt_C; cl00466" /db_xref="CDD:193830" gene 1620720..1621337 /locus_tag="Deba_1451" /db_xref="GeneID:9493912" CDS 1620720..1621337 /locus_tag="Deba_1451" /note="KEGG: dal:Dalk_4915 hypothetical protein; SPTR: B8FDG0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807413.1" /db_xref="GI:302342884" /db_xref="GeneID:9493912" /translation="MAVVSISRQYGAGGVKLGMKLAERLGYQFVDRNLLGQVAEQANV SLKWVEEVEKEAGGLMARFVAEWARQHPHVRNIPDASTRFDETAYRAFLTRVISNLAA GDRVVFMGRGSQYILKNNPKAVRISLVASEQTRIANLMEHYSVDRAKAEHVVNKEEKR RLAFLCGFGEGKSEETACYHAVLNTGLVHQDDAVDFICKLVERIG" misc_feature 1620726..1621328 /locus_tag="Deba_1451" /note="Cytidylate kinase [Nucleotide transport and metabolism]; Region: Cmk; COG1102" /db_xref="CDD:31299" gene complement(1621419..1621742) /locus_tag="Deba_1452" /db_xref="GeneID:9493913" CDS complement(1621419..1621742) /locus_tag="Deba_1452" /note="KEGG: sgr:SGR_3956 two-component system sensor kinase; SPTR: B5H5J4 Sensor protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807414.1" /db_xref="GI:302342885" /db_xref="GeneID:9493913" /translation="MTLDNPYRPFLDQIALTTSQLEQLKRQNAQGRIFQPADLQAVLH QARATVGQLAAFLGIDQPDLSDQAVDQAGLAVYDQAMEACMAITRLSLDMARLHGPSY LVGHI" gene complement(1621819..1622112) /locus_tag="Deba_1453" /db_xref="GeneID:9493914" CDS complement(1621819..1622112) /locus_tag="Deba_1453" /note="KEGG: nph:NP2724A isochorismate synthase; SPTR: C8TJH7 Putative side tail fiber protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807415.1" /db_xref="GI:302342886" /db_xref="GeneID:9493914" /translation="MKPVVPLSRLLQPTNPPTAKSQSAFWGAPDKTRVIPSNAADISS AGQSRARATAGPRVADRGEAEARLLFARSQIVGEPARAMAAQANLSGRPHAGC" gene 1622419..1623765 /locus_tag="Deba_1454" /db_xref="GeneID:9493915" CDS 1622419..1623765 /locus_tag="Deba_1454" /note="COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881:IPR001179:IPR008880:IPR005215; KEGG: nth:Nther_1101 trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; SPTR: C6MN07 Trigger factor; TIGRFAM: trigger factor; PFAM: Bacterial trigger factor protein (TF) C-terminus; Bacterial trigger factor protein (TF); TIGRFAM: trigger factor" /codon_start=1 /transl_table=11 /product="trigger factor" /protein_id="YP_003807416.1" /db_xref="GI:302342887" /db_xref="GeneID:9493915" /translation="MKVNVEQINTVKRALTVEVPAAEVDKAIEKLFAKHGRKAKIKGF RAGKVPRAVLERYYGPQVAFEAAEVLVTEHTNPAIDEAGLSPLAQPEFDFDGPPQKGQ DFAFKVLFDVRPQFDLAPESYKGFEIKEPNLVAGDEEINKRLDDLRARQAMLVPLEED RPAQTGDVVVVDYQSFEGDEPVEGGAAENVDVELGAGQVREEIEVALVKVRPGDEVET TVRIEDKKDGADVTKDVRFKLVVKAIKKKLLPDLDDDFARSVSPQFETLDALRQRIRQ DMEDAFAREKDMQVRRQILDHIRELGQFDLPDSLVAQEVENMVESFKARLRQNGMDPD AVGLDAEKLATDFRPEAEKKVRAGIVLGRISEVESVDVTEEDFTAHYEKVSAQTGQPA DVIKEIYNKNNMMGSVIAQLLEEKTLQAIKSGAIIKSVDPSELAQEMANDQAREQE" misc_feature 1622455..1623684 /locus_tag="Deba_1454" /note="trigger factor; Region: tig; TIGR00115" /db_xref="CDD:188026" misc_feature 1622890..>1623078 /locus_tag="Deba_1454" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587" /db_xref="CDD:187101" misc_feature 1623214..1623687 /locus_tag="Deba_1454" /note="Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698" /db_xref="CDD:191345" gene 1623795..1624391 /locus_tag="Deba_1455" /db_xref="GeneID:9493916" CDS 1623795..1624391 /locus_tag="Deba_1455" /EC_number="3.4.21.92" /note="COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907:IPR018215; KEGG: gem:GM21_3011 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; PRIAM: Endopeptidase Clp; SPTR: C6E2T0 ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease, proteolytic subunit ClpP" /protein_id="YP_003807417.1" /db_xref="GI:302342888" /db_xref="GeneID:9493916" /translation="MSSLIPFVIEQTSRGERSYDIYSRLLKDRIIILGQAIDDNVANV VTAQLLFLEAEDPNKDIHLYINSPGGVVTAGMAIYDTMQFIKAPVSTLCMGQAASMAA LLLAAGEPGKRYSLPKARILIHQPSGGAQGQASDIEIHAREILRMREDLNNILAQHTG QSLEKIAADTERDYFMSGDEAVAYGVIDKVISRRAVEK" misc_feature 1623852..1624364 /locus_tag="Deba_1455" /note="Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017" /db_xref="CDD:132928" misc_feature order(1623888..1623890,1623894..1623896,1623921..1623926, 1623933..1623938,1623945..1623947,1623990..1623992, 1624011..1624013,1624023..1624025,1624032..1624034, 1624041..1624046,1624056..1624058,1624080..1624082, 1624146..1624148,1624152..1624154,1624170..1624181, 1624221..1624223,1624230..1624232,1624236..1624238, 1624242..1624244,1624311..1624313,1624317..1624319) /locus_tag="Deba_1455" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132928" misc_feature order(1624089..1624091,1624164..1624166,1624311..1624313) /locus_tag="Deba_1455" /note="active site residues [active]" /db_xref="CDD:132928" gene 1624435..1625688 /locus_tag="Deba_1456" /db_xref="GeneID:9493917" CDS 1624435..1625688 /locus_tag="Deba_1456" /note="COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterProIPR010603:IPR013093:IPR019489:IPR004487:IPR 003593; KEGG: sfu:Sfum_0099 ATP-dependent protease ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; Clp ATPase-like; SMART: ATPase AAA; SPTR: A0LEF0 ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease, ATP-binding subunit ClpX" /protein_id="YP_003807418.1" /db_xref="GI:302342889" /db_xref="GeneID:9493917" /translation="MSKKTNGKGPDLVCSFCGKSQEEVKKLIAGPSVYICDECIELCN EIIEEEYQKEEAANQVNIPKPREIKAIIDDYVVEQERAKKILAVAVHNHYKRIDAKAD MGGVELQKSNILLIGPTGCGKTLLAQTLARIINVPFTIADATTLTEAGYVGEDVENII LNLLQAADYDVERAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTIA SVPPKGGRKHPQQEFVKVDTTNILFICGGAFVGLDKIISNRIGAKSMGFTAEVKERKE ETPLGDTLAKCRPEDLIKFGLIPEFVGRLPVAATLDELSEDALIRILTEPKNALVKQY QKLFEFEGVDLKFTDEAYKAVAAEAISRKSGARGLRSILEAAMLDIMYDLPSLKGVQE CVVGEEVITKGEQPMLLYSSQAEYA" misc_feature 1624441..1625676 /locus_tag="Deba_1456" /note="ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342" /db_xref="CDD:180029" misc_feature 1624468..>1624536 /locus_tag="Deba_1456" /note="ClpX C4-type zinc finger; Region: zf-C4_ClpX; pfam06689" /db_xref="CDD:148346" misc_feature 1624663..>1625013 /locus_tag="Deba_1456" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1624783..1624806 /locus_tag="Deba_1456" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1624786..1624809,1624978..1624980) /locus_tag="Deba_1456" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1624966..1624983 /locus_tag="Deba_1456" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1625374..1625628 /locus_tag="Deba_1456" /note="C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431" /db_xref="CDD:192583" gene 1625786..1628182 /locus_tag="Deba_1457" /db_xref="GeneID:9493918" CDS 1625786..1628182 /locus_tag="Deba_1457" /EC_number="3.4.21.53" /note="COGs: COG0466 ATP-dependent Lon protease; InterProIPR003111:IPR003959:IPR008269:IPR008268:IPR 001984:IPR004815:IPR003593:IPR020568; KEGG: acp:A2cp1_3496 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; ATPase AAA; SPTR: B8J5G4 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related ATP-dependent protease; ATP-dependent protease La" /codon_start=1 /transl_table=11 /product="ATP-dependent protease La" /protein_id="YP_003807419.1" /db_xref="GI:302342890" /db_xref="GeneID:9493918" /translation="MRAPLLPLRDIVVFPRMVAPLFVGRQRSVAALEYAMEHGKLIFL ATQKDARIDEPGRDEIHLTGALSTVLQLLRLPDGTVKALIEGKERARIDHFLPNDDFF LVELEPIPEAFAPDRESEALIRAVNQAFDQFAKLNKKIPQEVLQSMSGLTDPGVLADT MVSHLPLKLEDKQRLLETLEPNRRLELLYEMMGGEIEILQIEQRIKGRVKRQMEKTQR EYYLNEQMRAIQKEMGDKAGGESEIRELEEKLEKRRYPRQVAEKIRAEIKKLKLMSPM SAEATVVRNYVDWLMALPWYERTRDKHDLKEAQAILDEDHYGLEKPKERILEFLAVQA MTKKIKGPILCFVGPPGVGKTSLARSIARAMGRKFIRLSLGGVRDEAEIRGHRRTYIG ALPGKIIQSMRRVGSVNPVFCLDEVDKMSTDFRGDPSAALLEVLDPEQNYAFNDHYLD VDYNLSEVLFITTANTLYSIPAPLQDRMEIIRLAGYTELEKVSIARQFLLPKQAKAHG LQPDQAQIGDKVMQQIIQRYTREAGVRNLEREVASICRKVTKDLVTKGDLGGKVKITG GALEKYLGVTKFRHGLPEAKDHVGLTNGLAWTEVGGEVLTTEAMIMPGKGKLTITGKL GEVMQESAQAALSYVRTRARRLGLPENFYTHVDIHIHVPEGATPKDGPSAGITLATSL VSALTRIPVRADVAMTGEITLRGRVLPIGGLREKIMAAHRVGMTKVLIPKDNDKDIKE IPHKVLRSVELVTVEHMDEVLRHALAVDDPDALFHGDDEPFLLTVPAADDKPSDLMAH " misc_feature 1625795..1628080 /locus_tag="Deba_1457" /note="ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466" /db_xref="CDD:30814" misc_feature 1625795..1626349 /locus_tag="Deba_1457" /note="Found in ATP-dependent protease La (LON); Region: LON; cl01056" /db_xref="CDD:141077" misc_feature 1626752..1627228 /locus_tag="Deba_1457" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1626827..1626850 /locus_tag="Deba_1457" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1626830..1626853,1627028..1627030,1627172..1627174) /locus_tag="Deba_1457" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1627016..1627033 /locus_tag="Deba_1457" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1627214..1627216 /locus_tag="Deba_1457" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1627472..1628080 /locus_tag="Deba_1457" /note="Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362" /db_xref="CDD:191262" gene 1628272..1628347 /locus_tag="Deba_R0028" /db_xref="GeneID:9493919" tRNA 1628272..1628347 /locus_tag="Deba_R0028" /product="tRNA-Val" /db_xref="GeneID:9493919" gene 1628412..1628488 /locus_tag="Deba_R0029" /db_xref="GeneID:9493920" tRNA 1628412..1628488 /locus_tag="Deba_R0029" /product="tRNA-Asp" /db_xref="GeneID:9493920" gene complement(1628615..1628992) /locus_tag="Deba_1458" /db_xref="GeneID:9493921" CDS complement(1628615..1628992) /locus_tag="Deba_1458" /note="KEGG: swo:Swol_1771 hypothetical protein; SPTR: Q0AW35 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807420.1" /db_xref="GI:302342891" /db_xref="GeneID:9493921" /translation="MKKWTFALMAGLLAAGPTQLAMAEPVADAIARSVCSGSEQSLKL SDEQKQAYLGNMEYEAMFSDFGANTGKVMQFKKAANYQASSCKRVEYGMDGNKVWQKT AVYVAPVELKGDTVHAPNWAKLE" misc_feature complement(<1628825..>1628977) /locus_tag="Deba_1458" /note="aspartate-alanine antiporter; Region: Asp_Ala_antiprt; TIGR03802" /db_xref="CDD:163514" gene complement(1629247..1630458) /locus_tag="Deba_1459" /db_xref="GeneID:9493922" CDS complement(1629247..1630458) /locus_tag="Deba_1459" /note="InterPro IPR003660; KEGG: gem:GM21_0283 sensor with HAMP domain; PFAM: histidine kinase HAMP region domain protein; SPTR: C6DY92 Putative sensor with HAMP domain; PFAM: HAMP domain; Protein of unknown function (DUF3365)" /codon_start=1 /transl_table=11 /product="sensor with HAMP domain" /protein_id="YP_003807421.1" /db_xref="GI:302342892" /db_xref="GeneID:9493922" /translation="MIDKPFMKAKSALLTAFAVLFISVAAAFVWLVYDQSQETALREA EEKARIILERNLAIHSYFAHQLKPKIFSITDKHLPSSYFEPTWMSSTFAVRRIDEHYQ ALAKDEYYYKECAINARSPKNEADDYEREFINELNKNPKLTTRTAIRIIDDKPFFVYL RRGESMEKSCLRCHSQPEYAPPEMVRIYGPERSFNRHDGELVSAISIRVPLSEILSRG AEFAGRLSVLTLGILGLMVAVVLFVTRQIFLRPLGRIREHTAFIGKTPQNLGDQIPPM PFVEWNDLAQDFNQMSLSLKESHAQLEERVRQRTAELERSNQQLVAEMTERKRAEAQR EELIAELRQALSEINQLSGLLPICASCKKIRDDKGYWQQIENYISTHSEAEFTHGICP ECIKKLYPELD" misc_feature complement(1629826..1630419) /locus_tag="Deba_1459" /note="Protein of unknown function (DUF3365); Region: DUF3365; pfam11845" /db_xref="CDD:192851" misc_feature complement(1629568..1629786) /locus_tag="Deba_1459" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(<1629403..>1629591) /locus_tag="Deba_1459" /note="Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]; Region: COG4191" /db_xref="CDD:33926" gene 1630918..1631361 /locus_tag="Deba_1460" /db_xref="GeneID:9493923" CDS 1630918..1631361 /locus_tag="Deba_1460" /note="COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185:IPR019823; KEGG: sat:SYN_01974 large-conductance mechanosensitive channel; PFAM: large-conductance mechanosensitive channel; SPTR: Q2LUI9 Large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein" /codon_start=1 /transl_table=11 /product="large conductance mechanosensitive channel protein" /protein_id="YP_003807422.1" /db_xref="GI:302342893" /db_xref="GeneID:9493923" /translation="MFKEFKEFAMKGNVVDMAVGIIIGAAFGAIVKSLVSDIIMPPIG LILGDVDFSGLFVVLRDGAQAGPYLSLEMAQKAGAVTWNYGAFINTVVSFLIVAFSVF MLVKGMNQLRRKQEAAPPTTKECPYCLSTIPVKASKCAFCTATLD" misc_feature 1630918..1631334 /locus_tag="Deba_1460" /note="Large-conductance mechanosensitive channel, MscL; Region: MscL; cl00860" /db_xref="CDD:186226" gene complement(1631457..1632152) /locus_tag="Deba_1461" /db_xref="GeneID:9493924" CDS complement(1631457..1632152) /locus_tag="Deba_1461" /note="InterPro IPR013229:IPR011990; KEGG: dol:Dole_1853 hypothetical protein; PFAM: PEGA domain protein; SPTR: A8ZSC0 hypothetical protein; PFAM: PEGA domain" /codon_start=1 /transl_table=11 /product="PEGA domain protein" /protein_id="YP_003807423.1" /db_xref="GI:302342894" /db_xref="GeneID:9493924" /translation="MNRKHGGANAVMRWLAALALAMAVALALAGPALAEPEPGQAAQA QALALLDQGELAAAGGHFDKAEQLWQEALRARPAWPVAQQRLAQLPARRQGYAAQVAR IARDQKASLDFVEGVTLFNQGDYAGAAKIFQNVAEVLPGHPFARQYLADAQAQAQAIG YGSLTVESNLPAKISLDGRAVGVTPLTLDDLPVGEHVLTAEANDAQARQTVVIHGRST SLATFSFREVEAR" misc_feature complement(<1631547..1631669) /locus_tag="Deba_1461" /note="PEGA domain; Region: PEGA; pfam08308" /db_xref="CDD:116891" gene complement(1632264..1633442) /locus_tag="Deba_1462" /db_xref="GeneID:9493925" CDS complement(1632264..1633442) /locus_tag="Deba_1462" /note="InterPro IPR004827; KEGG: fal:FRAAL5152 dihydrolipoamide succinyltransferase, component of 2-oxoglutarate dehydrogenase complex (E2); SPTR: C0GSJ8 Ankyrin" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807424.1" /db_xref="GI:302342895" /db_xref="GeneID:9493925" /translation="MGALATPAPARRWAGWLVVALLCALAVALPAMAAGNDAQDRRAA QLLLELGQTPPQDYANQRRLLEAIIEQCPDSTHAPEAYWRLAEVYKRYLGLPDYTAIA LLFEKYLARYPRAADAPMARRQLIEAYEKTGQWEPVAAYFAKDLGPMDQLPDSRLFQD GLSYAQALEHTGRTAQAKAWYQKIVARDGGANSPAAAKARQRLAALGDEPRPSTNPAA PPVAAPTTQPAPTPLPNAPAPVPAPHAQPTTPLPPTPGAAGATCRLERIAGDVDLVGR AYTPAATPDGAADSRLSLDLPPGDRVLLRIDLQVAGGRDGWWSTVAAEGVWPMAVRRA DQPDQTPGRMLRLEPGSGGCRVELFVQDNGALAGGRPLTALLFWSDGQMSVVEATHGR " misc_feature complement(1633011..1633319) /locus_tag="Deba_1462" /note="tol-pal system protein YbgF; Region: tol_pal_ybgF; TIGR02795" /db_xref="CDD:188247" gene complement(1633445..1634320) /locus_tag="Deba_1463" /db_xref="GeneID:9493926" CDS complement(1633445..1634320) /locus_tag="Deba_1463" /note="KEGG: dat:HRM2_08280 hypothetical protein; SPTR: C0QJT8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807425.1" /db_xref="GI:302342896" /db_xref="GeneID:9493926" /translation="MHCRKFAAKTLIIALLLALAAGPAQAGFMGKVWDTATTGDSQPT TADPQPTQPATTPSAPSSAPATSDVGSQPPAIDPQPAQPATTPSAPSSAPATSDVGSQ PPAIDPQPAQPATAPSAPSSVPATSDVGSQPPAIDPQPAQPAAPTVQPSPPSQPEPAA IGGGVKLKRLRSFYDLVGRGEALKGDGSPEAHFALRLRAPGRTINAMALRAQGAPAPT WDTTAGNGAWLLVLAQKGKPLNQPDGALNLPLGQGELVADVLVQDDNSIASGNAKLEL VIGFADGQVLILPVE" gene 1634545..1636704 /locus_tag="Deba_1464" /db_xref="GeneID:9493927" CDS 1634545..1636704 /locus_tag="Deba_1464" /note="InterPro IPR002035; KEGG: dat:HRM2_08320 predicted serine/threonine protein kinase PpkA; SPTR: C0QJU2 Predicted serine/threonine protein kinase PpkA" /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase PpkA" /protein_id="YP_003807426.1" /db_xref="GI:302342897" /db_xref="GeneID:9493927" /translation="MKRALLVVVMALIAVAMAVPATAAEGRQPVKIDGKKHLPLRVLA RPFSHIYKTQDVAGGTAQENVPSFQPFYVYTRPSEQDRAAQRGWYEVGSDARGGVIGW MQAKDVFEWKQAMCLAYTHPEGRKPVLMFAEEPPLAKLVAAPPAQRDPAVEALYKAIA DKNIPVDFPVKSVEPQKAVDISKQFYLLPILDFKVVDFAGREGRVVKLAAVTAGGPEA RQASDIRSNTAYVEEATQESTQVAADTLKNLVFDVVFVMDTTVSMRPNIEATLRVIRQ VAANLGSDPEAAQGVRFGFWGYRDSAEDIPGIEYTTKNYTPTLQTAAEFENTLAGVQV TEIDSVDYPEDVFSGVDDAMRKTAWDDNAIKFMVLVGDAPGHELGHKWNLSGQDENTL RSIADDGSFYLLALHVKNPKATKHNPRAEQQYGVLGLNKGSGGQTTYTAVDSQDAAAY GVAAESLTQAIVSVVRAAKQGQVAPQLTGGGQGGELADLGQAPAAPAAQTPAQAPAQT PPPASPPAGGELADLGPEHQKLADDVQETTNRALRAALVEWIGQQTGAQAPRDIEAWA VDKDLLNPAVSSMEVRLLINKQQLSSLKQVLTEVMGAGRLGQIGGDDFFTALQSTAAA AARDPNQIKNARTMAETGLVPEFLLGLPYQSRLMAMTNELWQSWGPDEQDEFLNELEA RISAYQAIHDGPDGWIKLNPGDDAGEMVYPISLDLLP" gene 1636724..1637485 /locus_tag="Deba_1465" /db_xref="GeneID:9493928" CDS 1636724..1637485 /locus_tag="Deba_1465" /note="COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: dat:HRM2_08310 ABC-type transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C0QJU1 ABC-type transporter, ATP-binding protein; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807427.1" /db_xref="GI:302342898" /db_xref="GeneID:9493928" /translation="MGAREATAGRGLAFQLRGVSKRREKGGVAFDLVVPELEVAAGEF IAIVGPSGCGKSTLLDLLGLVLRPTAAHQFGVWDQNAARPGWRDVTTLSPRGLAAVRR ASIGYVLQTGGLLPFLSVGENIALTRRLGGLPVAAEDILALAGRLGIVEQLGKKPAHL SGGQRQRAAIARALAHGPSIILADEPTAAVDRRAAVEIRDQFKSLAGKLGAAVLMVTH DRELVAPVADRAFTFELERPAAELTVATVVEGGLG" misc_feature 1636766..1637425 /locus_tag="Deba_1465" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature 1636766..1637410 /locus_tag="Deba_1465" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature 1636868..1636891 /locus_tag="Deba_1465" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature order(1636877..1636882,1636886..1636894,1637051..1637053, 1637273..1637278,1637375..1637377) /locus_tag="Deba_1465" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature 1637042..1637053 /locus_tag="Deba_1465" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature 1637201..1637230 /locus_tag="Deba_1465" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature 1637261..1637278 /locus_tag="Deba_1465" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature 1637285..1637296 /locus_tag="Deba_1465" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature 1637363..1637383 /locus_tag="Deba_1465" /note="H-loop/switch region; other site" /db_xref="CDD:73014" misc_feature 1637478..1639339 /note="potential frameshift: common BLAST hit: gi|224367944|ref|YP_002602107.1| ABC transporter permease" gene 1637478..1638584 /locus_tag="Deba_1466" /db_xref="GeneID:9493929" CDS 1637478..1638584 /locus_tag="Deba_1466" /note="KEGG: dat:HRM2_08300 ABC transporter permease; SPTR: C0QJU0 ABC transporter permease" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="YP_003807428.1" /db_xref="GI:302342899" /db_xref="GeneID:9493929" /translation="MARGRRGDGLPFGLVLRLARADLAHEWVLSLCLVLAVAAVLSPL MLLFGLKFGAIETMRSRLVQDPRNREVRPMTSQTFSRQWLRELAGRADVAFVVPGIRQ IAATLEASLGAGPKLTLDVLPTAPGDPLLVENGAPAPGPGQCVLSFLAAESLGARVGD ALEVKVKRLRGSRFESGELRLRVAGVLDQRASALKAVYAPLELLEAIENYKDGLAVPE LGWPGDAPEAYPVFDGVVVALGRELGKLDELRLINGTGFGKLTRPSPAELARLTGYRV DPAWRVYLVEAAKRPVGLESVLAVKERLRGTGAFLLPWTRAVAARLLAADGSEAGSLN VLALGPLAEGAGRPRASNQRRPGRRAREWSPNPR" gene 1638584..1639339 /locus_tag="Deba_1467" /db_xref="GeneID:9493930" CDS 1638584..1639339 /locus_tag="Deba_1467" /note="COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dat:HRM2_08300 ABC transporter permease; PFAM: protein of unknown function DUF214; SPTR: C0QJU0 ABC transporter permease; PFAM: Predicted permease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807429.1" /db_xref="GI:302342900" /db_xref="GeneID:9493930" /translation="MLPAGASPPPGQAYLELRHERRVLRFPVSVAKERAPGEAAFAPP RLAGVLRLFAQRELTHDRSSGRFLLARRGYASFRLYAATIDDVEGLRRHFEAQGLSVH TEAQRIRDVTQLDGYLTLIFWLVALVGLMGGAAALTASLWASVERKQKELGVLRLLGM PTGAMVRFPLYQGLIIAVCGFVTAVGVFQALAWVINSLFQAHLQSAERLCRLPADHLL ATLGGVIALATLASAAAAWRVTRIDPAEALRDE" misc_feature 1639007..1639315 /locus_tag="Deba_1467" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 1639352..1640953 /locus_tag="Deba_1468" /db_xref="GeneID:9493931" CDS 1639352..1640953 /locus_tag="Deba_1468" /note="COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: dat:HRM2_08290 hypothetical protein; PFAM: protein of unknown function DUF323; SPTR: C0QJT9 Putative uncharacterized protein; PFAM: formylglycine-generating sulfatase enzyme" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807430.1" /db_xref="GI:302342901" /db_xref="GeneID:9493931" /translation="MAKFRIALLLLLSLATAAPALSQQADPYNPQPAAGDLTLPMPGG VSVAFRPIFIGEGDSPFAQRKFNMGDPQGGFKENPTSVSVGGAFLAKNKSGGEDWLFY LAKYELTEGQYYAVMGLPQGADKALLHSRKPMAGLSWFQANEFVDRYNQWLFANAKDK LPAQGGQPGYVRLPSEAEWEFAARGGAAVSSDVFDRRHPYDKPLEQCEWFAGAKSSHN VVKDVGLLAPNPLGLHDMLGNVCEMTHGLYQVEYYQGRNGGFTARGGHFLTDEKSLRS AMRAEQPFYLAGGGQIKANAKPTMGLRLALGGVVFADRNAVRQMAEAWEGYRAGKGAA LPAAVSVSPTSAQAGVKGRDAMEHLARLKKELAGQALSPGAAQQLGLLEASLGNIEFV LKQADEDSAYAWAKIAAERGFFLQRELAKLPTIQRLMTIAQDGGRTAMVEKYKERLNE FQANIDEAMSTYSESFRQLDKISPPAVDAGFTKYAKFLLERQAAAQLSSLKVVREQYA AFNKEKRANPELWRKQFEALGQGAQ" misc_feature 1639652..1640266 /locus_tag="Deba_1468" /note="Formylglycine-generating sulfatase enzyme; Region: FGE-sulfatase; cl00556" /db_xref="CDD:193867" gene 1641051..1641722 /locus_tag="Deba_1469" /db_xref="GeneID:9493932" CDS 1641051..1641722 /locus_tag="Deba_1469" /note="InterPro IPR008816; KEGG: dat:HRM2_08270 hypothetical protein; PFAM: 17 kDa surface antigen; SPTR: C0QJT7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="17 kDa surface antigen" /protein_id="YP_003807431.1" /db_xref="GI:302342902" /db_xref="GeneID:9493932" /translation="MKKIGVLMLVGAFLLSSVAGCANIQNDQTRTKTEGTLVGAGAGA VVGGVLGQLIGGNTTATLVGAGVGALVGSAAGFAYGSHVANEKAKYAKQEDWLNACIA SAQKVNADTRAYNDRLASEVRSLDAETQRLARAYDQKKAQKSQLLAEKKKVDKSLATA KQKLERAKYELSTQQKVLADARSAGKAQHAARLDQQINQLKAQIAELEGHTQSLASMS ARMSV" misc_feature 1641354..>1641716 /locus_tag="Deba_1469" /note="Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: COG3264" /db_xref="CDD:33075" gene 1641768..1642262 /locus_tag="Deba_1470" /db_xref="GeneID:9493933" CDS 1641768..1642262 /locus_tag="Deba_1470" /note="KEGG: dat:HRM2_08260 serine/threonine-protein kinase MRCK alpha (CDC42-binding protein kinase alpha); SPTR: C0QJT6 serine/threonine-protein kinase MRCK alpha (CDC42-binding protein kinase alpha)" /codon_start=1 /transl_table=11 /product="serine/threonine-protein kinase MRCK alpha (CDC42-binding protein kinase alpha)" /protein_id="YP_003807432.1" /db_xref="GI:302342903" /db_xref="GeneID:9493933" /translation="MPKYLAPLALLACLLAAGCATTEDPRTGGLFGYNPEAYQRRAQS QEAQLQALQQEQMQGQQTRGYLEQQRAQKLQEKQRMEQDLAALEGDVAKLQRKIDRAT LDTKAQRDRYARIKRELNSVNAEIARLKKAASPANEARIQEIKRLQKKLDGLLQEAEA LSRM" misc_feature <1641993..1642160 /locus_tag="Deba_1470" /note="valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729" /db_xref="CDD:180225" misc_feature <1642095..>1642259 /locus_tag="Deba_1470" /note="V-type ATP synthase subunit I; Validated; Region: PRK05771" /db_xref="CDD:180249" gene 1642318..1643433 /locus_tag="Deba_1471" /db_xref="GeneID:9493934" CDS 1642318..1643433 /locus_tag="Deba_1471" /note="COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151; KEGG: dat:HRM2_08250 CtpA1; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: C0QJT5 CtpA1; PFAM: peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)" /codon_start=1 /transl_table=11 /product="peptidase S41" /protein_id="YP_003807433.1" /db_xref="GI:302342904" /db_xref="GeneID:9493934" /translation="MFRLKLIVVALCLSAFSWAQAAADDLAWTSDRAALLFYEAMTAL QKNALRPPAPLDEARRAIGAAARGLDEFSAYWPREEYEAFKRAADPSFAGVGMEIWAD ESGAVICIPKPGGPAQKAGVAYGDRLISVDGKPVAAEAVYAAGAMIRGQAGSTVRLGL LGQGGRRKNVSIIRAKQAFRTVESTREGGAPRLRISSFTNNTPAELAEALGRLGAAKV VVIDLRGNVGGDMFAAMEAAGKLLPVGAPLLTLRQRGGETAYKNVGRPLNLTSRLFVW QDKRTASAAEVFVAALTRNKRATSIGQTSFGKGVAQKIVELSDGSALLVTYAELIPPG GRAYHGHGLRPDRALAPGADASDRAYALATAAAMSAK" misc_feature 1642591..1642845 /locus_tag="Deba_1471" /note="PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988" /db_xref="CDD:29045" misc_feature order(1642597..1642608,1642612..1642614,1642747..1642752, 1642759..1642764) /locus_tag="Deba_1471" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29045" misc_feature <1642894..1643355 /locus_tag="Deba_1471" /note="C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560" /db_xref="CDD:143476" misc_feature order(1643164..1643166,1643239..1643241) /locus_tag="Deba_1471" /note="Catalytic dyad [active]" /db_xref="CDD:143476" gene 1643810..1644910 /locus_tag="Deba_1472" /db_xref="GeneID:9493935" CDS 1643810..1644910 /locus_tag="Deba_1472" /note="COGs: COG1162 GTPase; InterPro IPR004881:IPR010914; KEGG: dsa:Desal_0179 ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; SPTR: C6BVN5 ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A" /codon_start=1 /transl_table=11 /product="ribosome small subunit-dependent GTPase A" /protein_id="YP_003807434.1" /db_xref="GI:302342905" /db_xref="GeneID:9493935" /translation="MKIESYPDTSSSIEHLTRMGWNAHFQARAESLAGDGASPARVVG VSKNSFRLGDGQSEWLASLAGRLKHEADGARPVTGDWVMARDSLISGVLERQNVLSRG ASGARGSQNARPRHEQVIAANLDAVFIVCGLDRDYNPRRLERYLTLVYNCGLNPVIVL TKADLHDDPTLFVGEVEELALGVPIHLVSAADDDGLVALAPYLSPGRTVTMVGSSGAG KSTLVNRLFGRAVQLTGAISNHVGKGKHTTTSRDLIVMPQGGMLIDNPGIREIAFWEV DSGVESVFPEIEKLALGCRFADCSHINEPGCRVLEAVASGELAEGRLENYRKMKREME YLAQRQHKSAERVEKERWKDVALQVKALKKRR" misc_feature 1643855..1644907 /locus_tag="Deba_1472" /note="GTPase RsgA; Reviewed; Region: PRK01889" /db_xref="CDD:179346" misc_feature 1643927..1644802 /locus_tag="Deba_1472" /note="YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence...; Region: YjeQ_engC; cd01854" /db_xref="CDD:57925" misc_feature order(1643936..1643938,1643942..1643944,1644041..1644052, 1644101..1644103,1644173..1644178,1644557..1644559, 1644563..1644568,1644572..1644574) /locus_tag="Deba_1472" /note="GTPase/OB domain interface [polypeptide binding]; other site" /db_xref="CDD:57925" misc_feature order(1644224..1644229,1644236..1644241,1644245..1644250, 1644257..1644262,1644356..1644358,1644644..1644646, 1644656..1644658,1644662..1644664,1644773..1644775, 1644782..1644784,1644794..1644796) /locus_tag="Deba_1472" /note="GTPase/Zn-binding domain interface [polypeptide binding]; other site" /db_xref="CDD:57925" misc_feature order(1644290..1644295,1644299..1644304,1644374..1644379, 1644455..1644472) /locus_tag="Deba_1472" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:57925" misc_feature 1644290..1644301 /locus_tag="Deba_1472" /note="G4 box; other site" /db_xref="CDD:57925" misc_feature 1644374..1644382 /locus_tag="Deba_1472" /note="G5 box; other site" /db_xref="CDD:57925" misc_feature 1644446..1644469 /locus_tag="Deba_1472" /note="G1 box; other site" /db_xref="CDD:57925" misc_feature 1644542..1644565 /locus_tag="Deba_1472" /note="Switch I region; other site" /db_xref="CDD:57925" misc_feature 1644551..1644553 /locus_tag="Deba_1472" /note="G2 box; other site" /db_xref="CDD:57925" misc_feature 1644599..1644610 /locus_tag="Deba_1472" /note="G3 box; other site" /db_xref="CDD:57925" misc_feature 1644605..1644613 /locus_tag="Deba_1472" /note="Switch II region; other site" /db_xref="CDD:57925" gene complement(1645002..1645529) /locus_tag="Deba_1473" /db_xref="GeneID:9493936" CDS complement(1645002..1645529) /locus_tag="Deba_1473" /EC_number="3.1.3.45" /note="COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023; KEGG: gur:Gura_2976 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PRIAM: 3-deoxy-manno-octulosonate-8-phosphatase; SPTR: A5G5T0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family" /protein_id="YP_003807435.1" /db_xref="GI:302342906" /db_xref="GeneID:9493936" /translation="MSGGDVQERAARIKLLVLDVDGVLTDGRVVYDASGGEIKFFDVR DGHGLKLWQRAGHGLIWLSGRGCQANRVRAQELGVDQLIEQSKVKLPVFLDVIAQRGL EPSQVAYMGDDLIDLPPMRVAGLAMAPADADPEAVRAAHWVADKPGGRGAVRQAVELI LKAQGKWAEVTARYY" misc_feature complement(1645008..1645514) /locus_tag="Deba_1473" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene complement(1645526..1646362) /locus_tag="Deba_1474" /db_xref="GeneID:9493937" CDS complement(1645526..1646362) /locus_tag="Deba_1474" /EC_number="2.5.1.55" /note="COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006218:IPR013785:IPR006269; KEGG: dsa:Desal_2260 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: C6BWN6 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxyphosphooctonate aldolase" /protein_id="YP_003807436.1" /db_xref="GI:302342907" /db_xref="GeneID:9493937" /translation="MSAPNDQTIIAGQPFGRRRLFFIAGPCVLESRDLALGVAERLAE VAHGLGAPLLFKSSFDKANRTSLGSFRGPGLDQGLRILEDVRRQSGLPVISDVHAPDQ AAAAAQVLDVLQIPAFLCRQTDLLQAAGRTGKPVNVKKGQFVAPHDVGPLAQKVLETG NRDVWLTERGFSFGYNNLVVDMRGLAIMGQSGCPVVFDATHSVQLPSGQGGCSGGDRR FVATLARAAVAAGAHGVFMEVHPNPDQALCDGPNSLPLDQVEALMKQLLAIYELINGG EA" misc_feature complement(1645544..1646356) /locus_tag="Deba_1474" /note="DAHP synthetase I family; Region: DAHP_synth_1; pfam00793" /db_xref="CDD:189723" misc_feature complement(1645544..1646311) /locus_tag="Deba_1474" /note="NeuB family; Region: NeuB; cl00496" /db_xref="CDD:186036" gene complement(1646367..1648007) /locus_tag="Deba_1475" /db_xref="GeneID:9493938" CDS complement(1646367..1648007) /locus_tag="Deba_1475" /EC_number="6.3.4.2" /note="COGs: COG0504 CTP synthase (UTP-ammonia lyase); InterPro IPR017456:IPR000991:IPR017926:IPR004468; KEGG: dal:Dalk_0804 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; PRIAM: CTP synthase; SPTR: B8FHU2 CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase" /codon_start=1 /transl_table=11 /product="CTP synthase" /protein_id="YP_003807437.1" /db_xref="GI:302342908" /db_xref="GeneID:9493938" /translation="MSPKFIFVTGGVLSSLGKGLSAASIGALLEARGLSVVLQKLDPY VNVDPGTMNPFQHGEVFVTDDGAETDLDLGHYERFTNARLGKKCNHTTGSIYYDVITK ERRGDYLGGTVQIIPHITDEIKRCIHEVAQGVDLAIIEIGGTVGDIESLPFLEAIRQF RTDAGRENCLYIHLTLVPYIKTAGELKTKPTQHSVSELRRVGIQPDILLCRSEKPLNK GLKDKIALFCNVEPESVITAIDAETIYELPLNFHEQNLDEQICRKLNIWTRTPHLQNW EELVYKLKHPSHEVTIAMVGKYVDLRESYKSLNEALCHGGVANSAKVNILFIDSERVE REGVEIIGDVDGVLVPGGFGARGVEGKLKAVEMARVNKIPYFGICYGMHMAVIEFARN MLKWEEAHTAEIDPNSPYPVIYLMREWFDFRSQRIERRDESTDLGGSMRLGAYPCRLV EGTLAHKAYRVEEISERHRHRYEFNNQFRDKLVEAGLVISGLSPDGQLVEIVELADHP WFLGCQFHPEFKSRPMTPHPLFRDYIRAAVRYKNDKQG" misc_feature complement(1646376..1647998) /locus_tag="Deba_1475" /note="CTP synthetase; Validated; Region: pyrG; PRK05380" /db_xref="CDD:180047" misc_feature complement(1647240..1647998) /locus_tag="Deba_1475" /note="CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer...; Region: CTGs; cd03113" /db_xref="CDD:48377" misc_feature complement(order(1647582..1647584,1647588..1647590, 1647780..1647785,1647792..1647794,1647798..1647800, 1647876..1647884,1647888..1647890,1647948..1647959, 1647966..1647968)) /locus_tag="Deba_1475" /note="Catalytic site [active]" /db_xref="CDD:48377" misc_feature complement(order(1647339..1647341,1647441..1647449, 1647579..1647581,1647888..1647890,1647951..1647965)) /locus_tag="Deba_1475" /note="Active site [active]" /db_xref="CDD:48377" misc_feature complement(order(1647339..1647341,1647441..1647449, 1647561..1647563,1647579..1647584,1647876..1647890)) /locus_tag="Deba_1475" /note="UTP binding site [chemical binding]; other site" /db_xref="CDD:48377" misc_feature complement(1646406..1647140) /locus_tag="Deba_1475" /note="Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746" /db_xref="CDD:153217" misc_feature complement(order(1646454..1646456,1646460..1646462, 1646592..1646603,1646799..1646801,1646859..1646861, 1646868..1646873,1646946..1646960)) /locus_tag="Deba_1475" /note="active site" /db_xref="CDD:153217" misc_feature complement(order(1646868..1646870,1646952..1646954)) /locus_tag="Deba_1475" /note="putative oxyanion hole; other site" /db_xref="CDD:153217" misc_feature complement(order(1646454..1646456,1646460..1646462, 1646871..1646873)) /locus_tag="Deba_1475" /note="catalytic triad [active]" /db_xref="CDD:153217" gene 1648318..1648911 /locus_tag="Deba_1476" /db_xref="GeneID:9493939" CDS 1648318..1648911 /locus_tag="Deba_1476" /note="COGs: COG0517 FOG: CBS domain; InterPro IPR000644:IPR013785; KEGG: sfu:Sfum_2076 signal-transduction protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: C8QYZ4 Putative signal transduction protein with CBS domains; PFAM: CBS domain" /codon_start=1 /transl_table=11 /product="CBS domain containing protein" /protein_id="YP_003807438.1" /db_xref="GI:302342909" /db_xref="GeneID:9493939" /translation="MKVRDRMSSPVQTTTPQASVDSALKMMRERDVRHLPVLEQGRLV GLVTDTELRTAWFPSLLDKLNVNDVMVKHPVTIGADETVYQAARLIHHNRITGLPVLD GGKLVGMITQADILQLLIETLGLLDETSRLDVVLSADEGALERAHAVIAANGGQVISV AQLSAAPARRVYSFRLRQTDVEPIRQALQKAGHQVIS" misc_feature 1648324..1648650 /locus_tag="Deba_1476" /note="FOG: CBS domain [General function prediction only]; Region: COG0517" /db_xref="CDD:30863" misc_feature 1648342..1648653 /locus_tag="Deba_1476" /note="The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-...; Region: CBS_pair; cl10010" /db_xref="CDD:99705" gene 1648913..1649791 /locus_tag="Deba_1477" /db_xref="GeneID:9493940" CDS 1648913..1649791 /locus_tag="Deba_1477" /note="COGs: COG1606 ATP-utilizing protein of the PP-loop superfamily; InterPro IPR005232:IPR014729; KEGG: pca:Pcar_2431 hypothetical protein; SPTR: Q3A1T7 Putative uncharacterized protein; PFAM: Asparagine synthase; TIGRFAM: conserved hypothetical protein TIGR00268" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807439.1" /db_xref="GI:302342910" /db_xref="GeneID:9493940" /translation="MNHGFDPGGLAPPLAAAWARLTARLAAFPSLLVAFSGGVDSALL LAAAARALPAERLAAGLCVGAFTPWWEAQRARDLAQSLGARLVELDADELSQPSIAVN DSQRCYYCKKLRLMLLTRQARQMGLAELAEGSQLDDAGDFRPGVKAVRELGVHSPLAE AGLDKAMVRALSRALGLPTADVPAAACLASRLPWGRPLDAAVLARIQAAEAGVRAVLG EALIRVRDHFPLARLELDPALLATAASEPARGRIVAAVEASGYASVCLDLKGYRQGGA QSSRGDASIDVVTKET" misc_feature 1648994..1649734 /locus_tag="Deba_1477" /note="TIGR00268 family protein; Region: TIGR00268" /db_xref="CDD:129369" misc_feature 1649003..1649614 /locus_tag="Deba_1477" /note="This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily; Region: Alpha_ANH_like_I; cd01990" /db_xref="CDD:30177" misc_feature order(1649012..1649020,1649024..1649035,1649090..1649092, 1649096..1649098) /locus_tag="Deba_1477" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30177" gene 1649795..1650703 /locus_tag="Deba_1478" /db_xref="GeneID:9493941" CDS 1649795..1650703 /locus_tag="Deba_1478" /note="KEGG: IL16; interleukin 16 (lymphocyte chemoattractant factor); SPTR: A1ZZJ3 Lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807440.1" /db_xref="GI:302342911" /db_xref="GeneID:9493941" /translation="MKLNKIVAFFAFMTLALLPVAANAAKNPFVMPDPPFDTAKVQYK LGGAQKGAEVLYIDGKKRATHTDASMSMFGMSTAQKTIVITTPDKIVNIDLEKGEGTE TGNMLTYMAQEYDKLSAAEQATVRKNAEKMGRNLMGMMPGGQIKTSKGTLMGKPVDIV SAMGITTYSWSGADVMLKTQGSLGPMQVDTQAVSLETNVAIPADAFAIPAGVKVTFDQ QADDMQRTMAKNWINNLKDPNFGKNGGNAGMGAMFGAPTGQQGHGQPAPGAYGSSGEH GEQQGEPGADEAMEQGMKVLQGLFGN" gene complement(1650744..1652207) /locus_tag="Deba_1479" /db_xref="GeneID:9493942" CDS complement(1650744..1652207) /locus_tag="Deba_1479" /EC_number="2.4.1.21" /note="COGs: COG0297 glycogen synthase; InterPro IPR013534:IPR001296:IPR011835; KEGG: sus:Acid_0307 glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; PRIAM: Starch synthase; SPTR: B4D6N7 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain; glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type" /codon_start=1 /transl_table=11 /product="glycogen/starch synthase, ADP-glucose type" /protein_id="YP_003807441.1" /db_xref="GI:302342912" /db_xref="GeneID:9493942" /translation="MKVLFVSSEIAPLAKSGGLADVAGSLPPALAARGAQVVMAMPLY GVVDRQAHNLEHAGLSYEVWACGGWGRRIDVWRARLGGCDCYLLEHNDLFDRPDLYGP PGGAYGDNLLRFVVFNKAVIELCRALNFAPDIVHANDWQTALLPAYIKSRPFDLGPIW SAATVLTVHNMAYQGVYGREMFGQTELPADMDSVGGAEYWGNISLLKAGLVCADAITT VSPSYAWEIQTPEGGHGMDGVLHARRDVLRGILNGADYDQWSPEKDRYLPANYSAQDL TGKRICRDKLLEAFGLEPAGERTAVIGFLGRLTHQKGVDFIAEMAWRLMDQDVRLCLF GTGDQHLEGMLWRLGQEHAGRIGVRLAFQEDLAHLLTAGCDILLMPSRYEPCGLSQLY AMRYGTAPLVRATGGLKDTVEPFEPDGHGSGVGFVFHDADAHSLWSAVRHALWVFGQP DQWRILQQNAMARDFSWNQSARQYLELYEQTMARRGR" misc_feature complement(1650756..1652207) /locus_tag="Deba_1479" /note="glycogen synthase; Provisional; Region: glgA; PRK00654" /db_xref="CDD:179083" misc_feature complement(1650768..1652204) /locus_tag="Deba_1479" /note="This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family...; Region: GT1_Glycogen_synthase_DULL1_like; cd03791" /db_xref="CDD:99965" misc_feature complement(order(1651041..1651043,1651056..1651058, 1651107..1651109,1651122..1651127,1651287..1651295, 1652154..1652156,1652163..1652165)) /locus_tag="Deba_1479" /note="ADP-binding pocket [chemical binding]; other site" /db_xref="CDD:99965" misc_feature complement(order(1650894..1650896,1650972..1650974, 1650978..1650983,1650996..1650998,1651533..1651535)) /locus_tag="Deba_1479" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99965" gene 1652439..1652891 /locus_tag="Deba_1480" /db_xref="GeneID:9493943" CDS 1652439..1652891 /locus_tag="Deba_1480" /note="KEGG: sen:SACE_6963 hypothetical protein; SPTR: A3QTM7 ORF68" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807442.1" /db_xref="GI:302342913" /db_xref="GeneID:9493943" /translation="MSLVDGIYLEEKKSNLGTGSTSSTVVFRNYYAVFFRGETAISFL LDDKLALTGMTEKGQASRFAAGMTHQPDLHEQFAQIKQALAQRAAQAKPAQCQPAAPP ATATPPAQPQPPQSAKPAKQVKPAAPKEASDGNWWDLTSRGADHLLKK" gene complement(1652881..1653582) /locus_tag="Deba_1481" /db_xref="GeneID:9493944" CDS complement(1652881..1653582) /locus_tag="Deba_1481" /note="COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: hbu:Hbut_0038 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: C8QWH8 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family" /codon_start=1 /transl_table=11 /product="5-formyltetrahydrofolate cyclo-ligase" /protein_id="YP_003807443.1" /db_xref="GI:302342914" /db_xref="GeneID:9493944" /translation="MNKDDLRQELGARWGALWPQTAVNDRAPLFPGAGKAAQRLRSLQ EYRLARTIAVTPEPVLLQARINALQDGKSLLAATPGLKQGLVRLGPEMVPFGKRAKDL RGGALFGAGRPLRLPQDKPGRVDMLVCAAMAVDGRGRMLGDGRGLLDLFHAILRALGS LGDRAKVVVLVDTAQVVAELPQDPWDARADVIVTPDEVIRLEHGEARPNPGLDDLPPK LAALPLARAARGVIS" misc_feature complement(1652998..1653576) /locus_tag="Deba_1481" /note="5-formyltetrahydrofolate cyclo-ligase family; Region: 5-FTHF_cyc-lig; cl00360" /db_xref="CDD:193786" gene complement(1653602..1656244) /locus_tag="Deba_1482" /db_xref="GeneID:9493945" CDS complement(1653602..1656244) /locus_tag="Deba_1482" /note="InterPro IPR008985; KEGG: ami:Amir_4870 LamG domain protein jellyroll fold domain protein; SPTR: C6WQK6 LamG domain protein jellyroll fold domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807444.1" /db_xref="GI:302342915" /db_xref="GeneID:9493945" /translation="MTVLAQTIRRPFFPRLAALLLALTLAMALPAAAVELEAGLYQSR DAQASCRLAILPDGSYALHMWQGGANQPHEHGFALAGRLLVAADGRLVGQFQSLPQSC CPLHGRLELLPRNAESFRVVAFTPTDGQGQWAAAEDTVFGLVARPAEGQAILRLGGQW RLRYWHTDLLPGNQPSDLVDGQIDLRADGDALRGQWSGRPGQVLLSPAPGGARLEYRD QSAGFSLEADLREQSGGLALCGTFRSTLGAGQLQLTRLGLPADPPGAVEARSSRGGRW DGLWVDPRTGSDFYQIGTSATGLGLTAYGGSPRNPRYLTRGQLTAGQGGAFSGPAQDA DGHCCGNQGWVTIRPLADDALEVTALWWPKGAPQPDPSRGQTFVIQRANDDASGGQAD VKRQGWPQVIAARPGLPSTESGALRAGFVWRMDGQTNDNTIFSQGGYGRDMDLFIDRA GHLAARVATTAGALELRSHNAVAPNTAHEAWLIYQNGGQAKLWLDGRQQDAVDMAAPW VGSNSPYIVGGSRWPGREFRGEITSLELWDQAQDVNHPAPPAFSLNPDGPPPADAPAQ AAPDRRPATLTLARWRHPSLFAHAYASDPAAGAALQAQGFLPEGPICRLWAQGGPGMV ELWAHIHQRTGQVVVSASRHSPPGFAERGSLGHASAQAGQGLKPLLSLTMPAGDDSAN RADQLCTTRADLTEALQAWGYAEPVVLAHVEPLDERQAAPPFDQGWDGAWRGEGWGRF LLQRQGGHLVMFWYYSTRRGPHYFGRYALEPGGRAAEGLAVGKPGPEATYYRHRLELI ADGPEGPRIKLTAWRLAAPMDDGRLVRFKKPAPTVTELHKVAQNAPRADADLLRETAE KLDPDQMLREALTRAQGQNRLVER" gene 1656402..1656932 /locus_tag="Deba_1483" /db_xref="GeneID:9493946" CDS 1656402..1656932 /locus_tag="Deba_1483" /note="KEGG: dal:Dalk_0095 hypothetical protein; SPTR: B8FKJ0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807445.1" /db_xref="GI:302342916" /db_xref="GeneID:9493946" /translation="MAGLRAFGRWELGLLDRAMSLSEEAVSDYFRLSEGFWGRHPFEL RTAVQLLPNEISHECLAQVLRLRRPASEGRLRHRDFYRICLQDHNLLGLIEREGQREL LGPLLVYVLTHELVHVVRFGKYLRLFDASANERRREEDTVHRLAADILTGVSLPRLET VLNFYESRGSMHFAQQ" gene 1656954..1657253 /locus_tag="Deba_1484" /db_xref="GeneID:9493947" CDS 1656954..1657253 /locus_tag="Deba_1484" /note="COGs: COG2331 conserved hypothetical protein; InterPro IPR013429; KEGG: dal:Dalk_4244 regulatory protein, FmdB family; PFAM: regulatory protein FmdB; SPTR: B8FM88 Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM: regulatory protein, FmdB family" /codon_start=1 /transl_table=11 /product="regulatory protein, FmdB family" /protein_id="YP_003807446.1" /db_xref="GI:302342917" /db_xref="GeneID:9493947" /translation="MPIYEYQCEACSQVTEALQRFSDPPLDTCPKCGGKLSKLISLNA FHLKGDGWYVTDYKGKNSSTCASKSEGESAGEASASTSSCDCSSGSCAASSGSDD" misc_feature 1656954..1657106 /locus_tag="Deba_1484" /note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS; cl00993" /db_xref="CDD:197419" gene 1657387..1657677 /locus_tag="Deba_1485" /db_xref="GeneID:9493948" CDS 1657387..1657677 /locus_tag="Deba_1485" /note="KEGG: sat:SYN_01922 cytoplasmic protein; SPTR: Q2LUL0 Hypothetical cytosolic protein" /codon_start=1 /transl_table=11 /product="cytoplasmic protein" /protein_id="YP_003807447.1" /db_xref="GI:302342918" /db_xref="GeneID:9493948" /translation="MRCFVVIFGSGAVLVASSHKSTTNPVLVKQLKSNGVGRMILMQA PIELCRARYGEHFEDIERRLGKDEFRVVDFNGCSVFDKFSFAELGQPILVEL" gene 1657677..1658399 /locus_tag="Deba_1486" /db_xref="GeneID:9493949" CDS 1657677..1658399 /locus_tag="Deba_1486" /note="COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: sfu:Sfum_3557 silent information regulator protein Sir2; PFAM: Silent information regulator protein Sir2; SPTR: A0LP75 Silent information regulator protein Sir2; PFAM: Sir2 family" /codon_start=1 /transl_table=11 /product="Silent information regulator protein Sir2" /protein_id="YP_003807448.1" /db_xref="GI:302342919" /db_xref="GeneID:9493949" /translation="MDALIARARALLARAENVAVLCGAGVSAESGVPTFRGQGGLWQD HRPEDLATPQAFDRDPELVWRWYNWRRGLIAACRPNPAHLALARLQERKPGLCLITQN VDGLQQLAGSRDVIELHGSIWRLRCTACGAEAEDRRPALPALPRCAACGGLLRPGVVW FGEQLDPVLLERAWQTAGACQAMLVVGTSAVVQPVASLAGVAKAAGAALIEVNLVTTA NSQSADLTLLGPAGRILPQLTA" misc_feature 1657722..1658390 /locus_tag="Deba_1486" /note="SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes...; Region: SIRT5_Af1_CobB; cd01412" /db_xref="CDD:29380" misc_feature order(1657749..1657751,1657755..1657760,1657779..1657784, 1657923..1657925,1657977..1657982,1657986..1657988, 1658031..1658033,1658235..1658237,1658250..1658252, 1658316..1658321,1658364..1658366) /locus_tag="Deba_1486" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:29380" misc_feature order(1657983..1657985,1658031..1658033,1658151..1658153, 1658157..1658171,1658247..1658255) /locus_tag="Deba_1486" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29380" misc_feature order(1658055..1658057,1658064..1658066,1658115..1658117, 1658124..1658126) /locus_tag="Deba_1486" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:29380" gene 1658403..1659233 /locus_tag="Deba_1487" /db_xref="GeneID:9493950" CDS 1658403..1659233 /locus_tag="Deba_1487" /note="COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: rmr:Rmar_1448 protein of unknown function DUF62; PFAM: protein of unknown function DUF62; SPTR: Q02BF9 Putative uncharacterized protein; PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807449.1" /db_xref="GI:302342920" /db_xref="GeneID:9493950" /translation="MKPRPLITLTSDFGAGSFVGLMKGVIWGVCPRANIVDLCHVVAA QDVWGGAVVMAEALASFEPGAVHVAVVDPGVGTERRGLCLRAGGQLFVGPDNGLFTAA LQTPGGWRAWRLDNRRFFRHSVSDTFHGRDIFAPVAAWLARGVAPEELGPAVDDPICL DWPRPQRRGQALIGQIIDADRFGNLTSNLGRELVLGFLAGAPASVTLDGPAGPLVIDG LSRAYGQAPPGRAVALFDSLGRLELAQVNGDLAAALGLGPGRARGLELRILRGACPAG " misc_feature 1658409..1659134 /locus_tag="Deba_1487" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1912" /db_xref="CDD:32096" misc_feature 1658418..1659134 /locus_tag="Deba_1487" /note="S-adenosyl-l-methionine hydroxide adenosyltransferase; Region: SAM_adeno_trans; pfam01887" /db_xref="CDD:190151" gene 1659265..1659498 /locus_tag="Deba_1488" /db_xref="GeneID:9493951" CDS 1659265..1659498 /locus_tag="Deba_1488" /note="KEGG: dvm:DvMF_0847 hypothetical protein; SPTR: B8DNX1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807450.1" /db_xref="GI:302342921" /db_xref="GeneID:9493951" /translation="MLKLRDLQWFREWLESGGWADAFHHAGAELRGEMIEVIEALLDA ADQADKVVGEVLFAKDGFAATAATEEIASKQRD" gene 1659503..1660036 /locus_tag="Deba_1489" /db_xref="GeneID:9493952" CDS 1659503..1660036 /locus_tag="Deba_1489" /note="KEGG: sml:Smlt3164 hypothetical protein; SPTR: B8L4U1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2939)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807451.1" /db_xref="GI:302342922" /db_xref="GeneID:9493952" /translation="MRRIMTITLPIVLAVAAFWGTYGVLQSPRYALYQIGKALKDGDS AIFLAYVDVPRIIANQRPAAADARANEAEENLRRAIQGVMDVVVGANPQAFHAQMAQI MNQLETDRLPSPFLIAYAASIQQNGDRALVVLSDPQSGDRLRLGMLRQNDQWRVVHVD QRDVRDLLRKYAAQTAG" misc_feature 1659542..>1659667 /locus_tag="Deba_1489" /note="Protein of unknown function (DUF2939); Region: DUF2939; pfam11159" /db_xref="CDD:192715" misc_feature 1659824..>1659934 /locus_tag="Deba_1489" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; Region: PLPDE_III; cl00261" /db_xref="CDD:193734" gene complement(1660033..1662396) /locus_tag="Deba_1490" /db_xref="GeneID:9493953" CDS complement(1660033..1662396) /locus_tag="Deba_1490" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003661:IPR003594:IPR005467:IPR 000014:IPR000700:IPR004358:IPR001610:IPR009082; KEGG: dma:DMR_41550 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein; SPTR: C4XPU6 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_003807452.1" /db_xref="GI:302342923" /db_xref="GeneID:9493953" /translation="MDDNHKSGPRENLAAPEVGQPPPFAFEAAQKKRLRHWRRLAFAL VFGAAAALTCWSLADPLIAAAAGGAWLKALGLAALCLAALTPLLARRLSLWWRTGLGL ACFYVMAWLQLRWAGPIGPGEVWLLAAPLAAAMFMGPWATAASLCLNAAVLAGVSGQC GFWSTPQTMAADQYGFFAGMLFFLDAIMAVVLAALLATHRRVIADQRIAVSDLLHSRE ALQATQAQLRQSEMRFRMLAENAVDIIWSMDLDLNYTYISPSVLGVTGFSAAEAMAQP LSHQTTPEAYAQLMDIFRQALRRGKQDGDWRLISQLDMPLRHKDGSHVWVSVSAAFVV GEDGRPLGLHGMSRDITKRKRATLELERKTQELAAAYDELHNTRQLIQNSRNKLKAIF DGLPDPIISLTAEGQIESLNLAAARMTKQHPRQLVGLSGQAFLSQADLPPKIIDTTLQ AFQAMLQSQGRQWRLVEAPGDDDGPRFFELTVTPVADDRGETVLGIVHFDDVTEFKRM ELRIRKYNDELERMVDERTQELTRARDDLQQERDRLARANSELRRLDQLRHDLTNMVV HDMKGPLAELMGNLDLLHYDLDKAQRDETLDMAEMGGQDLLRMIMNLLDIGRLEEDRL RARVQPLAFGPLAQRVRDKFTTLIRLKGLDVRVEDGATAPILADPDLMARVLQNLLTN ALQHTDAGQIVLSARTQDDGQAVISVSDTGGGIPRAAHGLIFKKFVQATEDGGPRTST GLGLTFCKLAVEAHGGEIWFESEQGQGTTFFVRLPASQPDEGEAESV" misc_feature complement(1661317..1661709) /locus_tag="Deba_1490" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(1661347..1661670) /locus_tag="Deba_1490" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(1661434..1661436,1661449..1661451, 1661548..1661559,1661596..1661598,1661614..1661616, 1661626..1661628)) /locus_tag="Deba_1490" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(1661407..1661409,1661413..1661415, 1661518..1661523,1661530..1661532,1661554..1661556, 1661566..1661568)) /locus_tag="Deba_1490" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(1661074..1661238) /locus_tag="Deba_1490" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(1660063..1661229) /locus_tag="Deba_1490" /note="Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852" /db_xref="CDD:33642" misc_feature complement(1660543..1660734) /locus_tag="Deba_1490" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(1660558..1660560,1660570..1660572, 1660579..1660581,1660591..1660593,1660600..1660602, 1660612..1660614,1660660..1660662,1660669..1660671, 1660681..1660683,1660690..1660692,1660702..1660704, 1660714..1660716)) /locus_tag="Deba_1490" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(1660696..1660698) /locus_tag="Deba_1490" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(1660075..1660383) /locus_tag="Deba_1490" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1660087..1660089,1660093..1660098, 1660111..1660113,1660117..1660119,1660165..1660176, 1660252..1660257,1660261..1660263,1660267..1660269, 1660273..1660275,1660342..1660344,1660351..1660353, 1660363..1660365)) /locus_tag="Deba_1490" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1660351..1660353) /locus_tag="Deba_1490" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1660168..1660170,1660174..1660176, 1660255..1660257,1660261..1660263)) /locus_tag="Deba_1490" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1662734..1664023 /locus_tag="Deba_1491" /db_xref="GeneID:9493954" CDS 1662734..1664023 /locus_tag="Deba_1491" /EC_number="2.3.3.1" /note="COGs: COG0372 Citrate synthase; InterProIPR002020:IPR019810:IPR016142:IPR010953:IPR 016141; KEGG: dal:Dalk_4974 citrate synthase I; PFAM: Citrate synthase; PRIAM: Citrate (Si)-synthase; SPTR: B8FDL5 Citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type)" /codon_start=1 /transl_table=11 /product="citrate synthase I" /protein_id="YP_003807453.1" /db_xref="GI:302342924" /db_xref="GeneID:9493954" /translation="MSEVAKLTIGDQTIELPVVIGTEGEKAIDISVLRQKTGVITLDP GFANTGSCTSAITFMDGEQGILRYRGIPVQELAEKSTFVETAYLLINGDLPTRNQLSR FSELLNEHSLVHEDMHLFFNNFPRSAHPMGILSSMVNALRSFYPTLEGLTEKEEINIT LTRLLSKVRTMAAMAYKMSRGHAVVYPRPNLSYCANFLNMMFDSPVKPYKMDEDLLRA LNVFWILHADHEQNCSTAAVRLVGSARVNLYAAISAGIAALWGPLHGGANQKVIEMLE MIQENGGDATPFIKKAKDRNDPFRLMGFGHRVYKTYDPRAKIMKEMCDKVLRVLNLHD PLLDIAKKLEEVAVEDPYFKDHNLYPNVDFYSGIVLRAMGIPTNMFTVMFAIGRLPGW IAQWKEGASDPNWKLYRPRQIYIGRTDSRFVPIDERG" misc_feature 1662779..1663981 /locus_tag="Deba_1491" /note="Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS...; Region: EcCS_like; cd06114" /db_xref="CDD:99867" misc_feature order(1662848..1662898,1662902..1662904,1662938..1662949, 1662956..1662958,1662968..1662970,1662983..1662985, 1663007..1663018,1663022..1663024,1663031..1663036, 1663043..1663048,1663079..1663081,1663088..1663093, 1663097..1663105,1663115..1663117,1663127..1663129, 1663139..1663141,1663148..1663150,1663157..1663165, 1663418..1663432,1663439..1663444,1663454..1663456, 1663463..1663474,1663481..1663483,1663502..1663507, 1663511..1663528,1663532..1663537,1663652..1663657, 1663949..1663951,1663955..1663981) /locus_tag="Deba_1491" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99867" misc_feature 1662866..1663963 /locus_tag="Deba_1491" /note="Citrate synthase; Region: Citrate_synt; pfam00285" /db_xref="CDD:189486" misc_feature order(1662872..1662874,1663418..1663420,1663427..1663429, 1663520..1663528,1663532..1663534,1663541..1663543, 1663631..1663654,1663661..1663663,1663676..1663678, 1663799..1663801,1663805..1663807,1663814..1663816, 1663820..1663822,1663883..1663885,1663895..1663897, 1663949..1663951,1663958..1663960) /locus_tag="Deba_1491" /note="active site" /db_xref="CDD:99867" misc_feature order(1662872..1662874,1663418..1663420,1663427..1663429, 1663520..1663525,1663631..1663636,1663640..1663654, 1663676..1663678,1663814..1663816,1663895..1663897) /locus_tag="Deba_1491" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature order(1663049..1663051,1663055..1663075,1663166..1663168, 1663220..1663222,1663232..1663234,1663298..1663300) /locus_tag="Deba_1491" /note="NADH binding [chemical binding]; other site" /db_xref="CDD:99867" misc_feature order(1663064..1663090,1663097..1663114,1663265..1663303, 1663343..1663348) /locus_tag="Deba_1491" /note="cationic pore residues; other site" /db_xref="CDD:99867" misc_feature order(1663418..1663420,1663427..1663429,1663523..1663528, 1663649..1663651,1663676..1663678,1663820..1663822, 1663883..1663885,1663895..1663897,1663958..1663960) /locus_tag="Deba_1491" /note="oxalacetate/citrate binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature order(1663520..1663525,1663532..1663534,1663541..1663543, 1663631..1663648,1663652..1663654,1663661..1663663, 1663799..1663801,1663805..1663807,1663814..1663816, 1663820..1663822,1663949..1663951) /locus_tag="Deba_1491" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature order(1663523..1663525,1663649..1663651,1663820..1663822) /locus_tag="Deba_1491" /note="catalytic triad [active]" /db_xref="CDD:99867" gene complement(1664182..1665336) /locus_tag="Deba_1492" /db_xref="GeneID:9493955" CDS complement(1664182..1665336) /locus_tag="Deba_1492" /note="COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136:IPR013785; KEGG: dal:Dalk_0105 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase NPD; SPTR: B8FKK0 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase NPD" /protein_id="YP_003807454.1" /db_xref="GI:302342925" /db_xref="GeneID:9493955" /translation="MGKRVLRTKLCDMLGIEYPILSAGMGPTLMGETTGAPVELVVAV SEAGGLGVLGGSGFTVDELREAIREIKKLTSKPFGVDLLLPKHIDSKGALGATGADKL PLKEILGSLPKQYQDWIKKIRTEMDLPDDDVIVRFNTTTMRPAEAVQVCLEEKVPLFA AGLGNPGFMVAEAHARGMKVLGITGNSKNARRMAESGIDMLVAQGYEGGGHTGRVGTM ALLPAAIDAAAPVPVLAAGGIGDGRGVAAALAMGCIGVWVGTRFLATNEGGALPVNKQ RIVDSTDEDTRVSRAYSGKTLRASYNGFHDLWDQSGLPPLPFPTQVLLSSAMLGSFIK AQKNEYVGGLAGQISGIIHEIKPAKQVLEEMVEETVEILCSKLPAAVTCK" misc_feature complement(1664233..1665318) /locus_tag="Deba_1492" /note="Nitronate monooxygenase; Region: NMO; pfam03060" /db_xref="CDD:145943" misc_feature complement(1664440..1665291) /locus_tag="Deba_1492" /note="2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin...; Region: NPD_like; cd04730" /db_xref="CDD:73392" misc_feature complement(order(1664557..1664568,1664623..1664631, 1664710..1664715,1664725..1664727,1664788..1664790, 1664851..1664853,1665088..1665090,1665262..1665267)) /locus_tag="Deba_1492" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(1664704..1664709) /locus_tag="Deba_1492" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(1664704..1664706) /locus_tag="Deba_1492" /note="putative catalytic residue [active]" /db_xref="CDD:73392" gene complement(1665354..1666916) /locus_tag="Deba_1493" /db_xref="GeneID:9493956" CDS complement(1665354..1666916) /locus_tag="Deba_1493" /note="COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022:IPR011762:IPR011763; KEGG: dal:Dalk_2022 carboxyl transferase; PFAM: carboxyl transferase; SPTR: B8FG38 carboxyl transferase; PFAM: carboxyl transferase domain" /codon_start=1 /transl_table=11 /product="carboxyl transferase" /protein_id="YP_003807455.1" /db_xref="GI:302342926" /db_xref="GeneID:9493956" /translation="MAFEKELEQLQKRRERALAMGGPAKLQRQYDAGKYDARQRIQRL LDADSFMEIGMLNHSDVPGMEQKTPADSKIGGFGKIDGRWVAIAANDFTVMAATSSRI AGRKEGHLKHHSAAHGMPLIYLGEAGGARMPDIMGSQGLASFGGGDLDSYLKIMSRVR QSPMVAAVMGECYGMPTWMACLADFVVQVKGSAMGVSGPRILEIALGEKTTDEELGGW KVHAEVTGMADRTVENEDECFAVIRQFLGYLPSHREQLPPVVETPAGSGQGMAKILDI LPEARNRAYDMHRILNCVVDEGSLFPLKPMFGRNVITALARIGGKSVGLVANQPMFGA GAMDTDGIDKVISFLCLCDSFNVPLIFFHDTPGFLVGKAAERKRVGARVMNFMNALGQ LSVPRLSIIVRKTYGMAFWNMMGSGSGADFLVAWPTAEMSFVAPEIAANVVFGGKLPQ DERDKEKWQGMVDSMVDDATPYAAAGHHLIHDVIDPRDTREFIVKCLDICQDSRTGGL SQHRLANWPTKF" misc_feature complement(1665366..1666916) /locus_tag="Deba_1493" /note="Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]; Region: COG4799" /db_xref="CDD:34408" misc_feature complement(1666290..1666811) /locus_tag="Deba_1493" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" misc_feature complement(<1665585..>1665986) /locus_tag="Deba_1493" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 1667234..1667902 /locus_tag="Deba_1494" /db_xref="GeneID:9493957" CDS 1667234..1667902 /locus_tag="Deba_1494" /note="COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: xau:Xaut_0582 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: A7ICU5 Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_003807456.1" /db_xref="GI:302342927" /db_xref="GeneID:9493957" /translation="MPKIIAVANLKGGVGKTTIALNLASALAGRRKAKVGVIDLDLQK SAMRWARQGQGQALGFPVAFLGAGAGAIKFKNTLDQAIAQSKTDILILDTPPQLADPT MLAALTADFVLTPVGASPLDLWAAGEAVALVDEARQERGDKLPLLALVPSKLKAGTVL ARELPARLAEMGPVAPIIHDRVAIIESAVLGQTVTSYAPGSPAHLEFEELGRYVLQRL KEAD" misc_feature 1667234..1667896 /locus_tag="Deba_1494" /note="ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192" /db_xref="CDD:31385" misc_feature 1667243..1667683 /locus_tag="Deba_1494" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature 1667264..1667284 /locus_tag="Deba_1494" /note="P-loop; other site" /db_xref="CDD:73302" misc_feature order(1667282..1667284,1667510..1667512) /locus_tag="Deba_1494" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene 1667902..1668165 /locus_tag="Deba_1495" /db_xref="GeneID:9493958" CDS 1667902..1668165 /locus_tag="Deba_1495" /note="InterPro IPR002145; KEGG: sus:Acid_5575 hypothetical protein; PFAM: CopG domain protein DNA-binding domain protein; SPTR: C0E1A0 Putative uncharacterized protein; PFAM: Ribbon-helix-helix protein, copG family" /codon_start=1 /transl_table=11 /product="CopG domain protein DNA-binding domain protein" /protein_id="YP_003807457.1" /db_xref="GI:302342928" /db_xref="GeneID:9493958" /translation="MAKRARLSQLKKDLDQARPTPPGGLSPAAPAIRKTDKSTTPGGL LRRTIYVTEAEWAALLERSYTSGQSVSEIIRQAVRQRLGLDQE" gene complement(1668156..1669136) /locus_tag="Deba_1496" /db_xref="GeneID:9493959" CDS complement(1668156..1669136) /locus_tag="Deba_1496" /note="COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR011032:IPR016040; KEGG: dma:DMR_23620 dehydrogenase; PFAM: alcohol dehydrogenase GroES domain protein; SPTR: C4XSN1 Dehydrogenase; PFAM: alcohol dehydrogenase GroES-like domain" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase GroES domain protein" /protein_id="YP_003807458.1" /db_xref="GI:302342929" /db_xref="GeneID:9493959" /translation="MLAWRFQDGRIERAQIAPPTPGPGQALLRPMLAGVCNTDVELLS GYYAFAGVAGHEFVAVVERAPDAPQWEGKRVVAEINIGCGGCANCLAGDARHCPTRRA IGIKGWDGAFAERLLAPIANLHRVPDKLPDRQAVFAEPLAAALEPSQQLHLKARHRLC VLGDGKLGLLSALALRQWCPGLLLIGRHAANLAKAAAQGVAVELTPAEASWPELAAKL GAFDVVVEATGRPEGINAALELVRPEGVVVAKTTSRLPSTINLARVVVDEIQIIGSRC GDMALALAHLAAGRLAVEPLIERVMAFDELPLAIEAARRGGAGKVLIDYS" misc_feature complement(1668165..1669136) /locus_tag="Deba_1496" /note="Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR_like; cd08242" /db_xref="CDD:176204" misc_feature complement(1668165..1669112) /locus_tag="Deba_1496" /note="Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063" /db_xref="CDD:31263" misc_feature complement(order(1668309..1668317,1668384..1668389, 1668447..1668449,1668453..1668458,1668525..1668527, 1668564..1668566,1668576..1668581,1668633..1668650, 1668708..1668710,1668720..1668722,1669014..1669016, 1669023..1669031)) /locus_tag="Deba_1496" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176204" misc_feature complement(order(1668720..1668722,1668972..1668974, 1669023..1669025,1669029..1669031)) /locus_tag="Deba_1496" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176204" misc_feature complement(order(1668846..1668848,1668870..1668872, 1668879..1668881,1668888..1668890)) /locus_tag="Deba_1496" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176204" gene 1669209..1669835 /locus_tag="Deba_1497" /db_xref="GeneID:9493960" CDS 1669209..1669835 /locus_tag="Deba_1497" /EC_number="3.5.1.9" /note="COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325; KEGG: gme:Gmet_0042 cyclase; PFAM: cyclase family protein; PRIAM: Arylformamidase; SPTR: Q39ZN2 Putative cyclase; PFAM: Putative cyclase" /codon_start=1 /transl_table=11 /product="Kynurenine formamidase" /protein_id="YP_003807459.1" /db_xref="GI:302342930" /db_xref="GeneID:9493960" /translation="MKYLDITLPLRPGMIAFPGDPVFAMEPVSSLAAGDACNLARLTM ASHSGTHVDPPAHYLPGAPTVEALELERLIGPATVLDLRGGRRIDRASLQRAGFTGQK RVLLKTDNGPLLDAGVFRDDYACLELDGARFLVEAGVWLVGVDYLSVEDHADGGSPVH KLLLAAGVIIVECLRLGQAPAGDYELLCLPLLITGADGAPARVVLRRP" misc_feature 1669209..1669832 /locus_tag="Deba_1497" /note="Putative cyclase; Region: Cyclase; cl00814" /db_xref="CDD:193946" gene complement(1669786..1671351) /locus_tag="Deba_1498" /db_xref="GeneID:9493961" CDS complement(1669786..1671351) /locus_tag="Deba_1498" /note="COGs: COG0815 Apolipoprotein N-acyltransferase; InterPro IPR003010:IPR004563; KEGG: dol:Dole_1768 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: A9A0U7 Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="YP_003807460.1" /db_xref="GI:302342931" /db_xref="GeneID:9493961" /translation="MNQDRATASVLPLALLCAVGGAAGGLALPPHDLWPLALVCLGPL LWAARLLSWWKAALCGLAWGVAQAAVVFAWLPGVIAAHGGLSWPLTWAMATLGYVYQG LFTAAFAVALRLPRRWPALTLAAAPLAWVAMEQARALVGLRLPWLPLGQALAAEPFLL QSAELWGVMGLSTLAAGVNALFWAALWPRRVFFSRFICLTLAAMCLIAPWLWGQERRA VIHGMAAAAPKLAVCAVQGDFDLAQLRDKSAARAVVARLEQLTRAAVDQRPQRPLLVA WPETAAPYYLFQTVSGGLAVRYLAMELKTYLALGARGAVETDQGLKPTNRLWLLNPDG AAVAHYDKTKLAPYGEFAPPGWPRQWLPPLAGGQDLWPGQSIAPLDLGPAKIGALICF ESAFAGLARRQTMAGADLLLNVANEAWFDDQAAPRQAVEQLRLRAVENRRACLRAANR GPSGLIGPDGAARLTDGPSLYAVAPLMNTRTLYDRHWPWPTIGLSLALAALTFLAARA GAKPPAPARRLRQ" misc_feature complement(1669873..1671258) /locus_tag="Deba_1498" /note="apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302" /db_xref="CDD:178970" misc_feature complement(1669873..1670649) /locus_tag="Deba_1498" /note="Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571" /db_xref="CDD:143595" misc_feature complement(order(1670104..1670106,1670167..1670172, 1670176..1670181,1670302..1670304,1670314..1670316, 1670326..1670328,1670515..1670517)) /locus_tag="Deba_1498" /note="putative active site [active]" /db_xref="CDD:143595" misc_feature complement(order(1670179..1670181,1670326..1670328, 1670515..1670517)) /locus_tag="Deba_1498" /note="catalytic triad [active]" /db_xref="CDD:143595" misc_feature complement(order(1669873..1669884,1669996..1670001, 1670035..1670040,1670044..1670052,1670056..1670061, 1670146..1670151,1670158..1670172,1670176..1670178, 1670269..1670274,1670284..1670286,1670305..1670307, 1670314..1670325)) /locus_tag="Deba_1498" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143595" gene complement(1671361..1671900) /locus_tag="Deba_1499" /db_xref="GeneID:9493962" CDS complement(1671361..1671900) /locus_tag="Deba_1499" /note="COGs: COG3065 Starvation-inducible outer membrane lipoprotein; InterPro IPR004658; KEGG: sat:SYN_00736 outer membrane protein Slp precursor; PFAM: outer membrane lipoprotein Slp; SPTR: Q2LVC8 Outer membrane protein slp; PFAM: Outer membrane lipoprotein Slp family; TIGRFAM: outer membrane lipoprotein, Slp family" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein Slp" /protein_id="YP_003807461.1" /db_xref="GI:302342932" /db_xref="GeneID:9493962" /translation="MPRIFTTTLLLLAALGLSACGPTFLPQQIQAELSPDLSLDQVLA QPDAFKGKTVLWGGRVIKTINKPQGTVVEVVQLPLDQNGQPQDVDKSHGRFIVSLPQF LDPAIYAAGREVSVAGQVVGVEELPLGEIKYTYALLRGKVVHLWPKRPVNVRFDDPMP PLYPGPPAMYWYWSPYMWW" misc_feature complement(1671364..1671828) /locus_tag="Deba_1499" /note="Outer membrane lipoprotein Slp family; Region: Slp; cl01164" /db_xref="CDD:163955" gene complement(1671988..1673253) /locus_tag="Deba_1500" /db_xref="GeneID:9493963" CDS complement(1671988..1673253) /locus_tag="Deba_1500" /note="COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR001484:IPR016196; KEGG: dol:Dole_2623 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZWU5 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_003807462.1" /db_xref="GI:302342933" /db_xref="GeneID:9493963" /translation="MRKIESATPFWGWRVVAAAFTSNFMATGSAFYIFNALMLPLCQT HGWSRAELNYAPMLGFGLGLISQVVYGTFVGVVGPRRLMAIGPIVSAAAFIMLGQVDG LLLFYGLFVVLVWGNGAMNGIVANTAVSNWFGPRLGSAMGLAAAGISLSGAVLPYAAM VILERSDLPTTFLAVGLFILLGAPLNWLLVRDSPEAVGQYVDGQPPEQLASDVAATPP PPGESLAAAMAWTPARIMREPSFWKVGVSYAFSTMGVVGVMFQLGPRMRDVGFDNHTA MLLMSATALAGTAGKYLWGMICDRLDTLKVVACLNICNVVGLALGLVPGGMAISLAFV LVFGFAMGGIMSTFPIVARYLYGRLAFARVFRFMALFLALEGVGSIIMGHVFEYTGSY DWAFVIFIVLDVVAAGLVLWAKKPAPMAA" misc_feature complement(1672048..1673217) /locus_tag="Deba_1500" /note="Oxalate/Formate Antiporter; Region: 2A0111; TIGR00890" /db_xref="CDD:162091" gene 1673472..1674494 /locus_tag="Deba_1501" /db_xref="GeneID:9493964" CDS 1673472..1674494 /locus_tag="Deba_1501" /note="KEGG: sun:SUN_2384 hypothetical protein; SPTR: A6QCW1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807463.1" /db_xref="GI:302342934" /db_xref="GeneID:9493964" /translation="MSVRRFHVLLFACCLTLGACLIGGPARAELSQDERKFLHEIYRE QTRRDVGFFKVLAGLTNMVLSPDLSSAFLRTDDDEYGVSGVRFSSTKLPFYHTFKSEK HDWSIFAGLTLGYLNAAQDIDAPAVFNDQDERLAVNSRWKGYSGNVEAGLNYPLGLGF TVSPSLGFGLAQLRNSVDYLNAFGKNELAPIIDGVTANFYVDTLNYSAGLALAYDLAL GPVDLQAKAKYSYVYTQAYDSTDEVQRFHEHTGVASGRLQLRGPTGLSPWGLPLGWEL FTAQNWLPDIDKEVLGFTYYCEFGGALAVEIAKAGLPVRALKLGGSGLVGDGVSGWSL ILGYSF" gene complement(1674565..1676268) /locus_tag="Deba_1502" /db_xref="GeneID:9493965" CDS complement(1674565..1676268) /locus_tag="Deba_1502" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006090:IPR013764:IPR009075:IPR009100; KEGG: sse:Ssed_3347 acyl-CoA dehydrogenase-like protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C0GJ79 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003807464.1" /db_xref="GI:302342935" /db_xref="GeneID:9493965" /translation="MILLNPKNHTRAYPDAISKEIMVKTIDFFERKGKRNLKADYRDR IWYDDFLEFQKDNQIFYNLLTPQAYGDGQTRWDTYRNCEFNEILGFYGLVYWYTWQVT ILGLGPLWMSHNEAIKKRTAQLLKDGAIFGFGLSEREHGADIYTTDMTLSGDGQGGYK ARGGKYYIGNGNKAAILSTFGRMAGTDNEYVFFAAQPGHEKFELVKNVVDSQMYVAEY ALHDYPVGEADIIARGPHAWDSALNTVNVGKYNLGWASVGICTHALYESINHAANRRL YKMFVTDFPHVRQIFVDAYARLVAMKLFAQRASDYFRSANADDRRYLLYNPIVKMKVT VQGENIIDMLWNVIAAKGFENEMYFSSAASDIRGLPKLEGTAHVNMALIVKFMANYFF NPKAYPETPKRGDAACDSFLWDQGPTRGLGQIQFHDFRPVLAKWEHLPNVKIFSEQVK VLERFLSQATPSKDQARDTDFLLSLGEIFTLVPYGQLILEAAAHEGLEEALIDQIFDC FVRDFSKFAMELYQKPSSTDQQMDLCMKMIRRPNVDMARFGTIWAEHVYALEGLYEMN D" misc_feature complement(1675114..1675959) /locus_tag="Deba_1502" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature complement(order(1675138..1675140,1675144..1675146, 1675150..1675158,1675762..1675764,1675768..1675770, 1675864..1675866,1675870..1675872,1675957..1675959)) /locus_tag="Deba_1502" /note="active site" /db_xref="CDD:173838" gene 1676657..1677679 /locus_tag="Deba_1503" /db_xref="GeneID:9493966" CDS 1676657..1677679 /locus_tag="Deba_1503" /note="InterPro IPR013216; KEGG: sfu:Sfum_0224 hypothetical protein; PFAM: methyltransferase type 11; SPTR: A0LES3 Putative uncharacterized protein; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003807465.1" /db_xref="GI:302342936" /db_xref="GeneID:9493966" /translation="MSAQQFMFGPQDFCRQDETDDKLFYAKPRLVSHLDRTALATVER LIGSLVIEERPVILDLMASWDSHLPPALAPGRVVGLGLNAEELRANPALDEFVVADLN QSPTLPWPDATFDVVLNTVSVDYLTRPLEVFAEAGRVLKPGGLFLVTFSDRWFEPKVT RVWRGSSEAERIFLVEELFRAAGCFGPTRVFTSRGKDRPADDKYAALGLPSDPIVAIF ADKAGGDPTRRPRPLPADDRHAPDKAELARRYAAVGQTLACPHCGQGLRKWAVPQTPF TEWDNDFMYVCFNDACPYLRAGWDAMSRQGNHGVSYRLMYNPENGGCMPIPVQSLSTL RDGLID" misc_feature 1676867..1677100 /locus_tag="Deba_1503" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1677824..1678552 /locus_tag="Deba_1504" /db_xref="GeneID:9493967" CDS 1677824..1678552 /locus_tag="Deba_1504" /note="COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR008920:IPR011711:IPR011991; KEGG: bbe:BBR47_15820 probable transcriptional regulator; PFAM: regulatory protein GntR HTH; fatty acid responsive transcription factor FadR domain protein; GntR domain protein; SMART: regulatory protein GntR HTH; SPTR: C0Z989 Probable transcriptional regulator; PFAM: FadR C-terminal domain; Bacterial regulatory proteins, gntR family; TIGRFAM: fatty acid metabolism transcriptional regulator FadR" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_003807466.1" /db_xref="GI:302342937" /db_xref="GeneID:9493967" /translation="MEQSKQPAKRLSDIIEDRLVEMILGGDFPPGAALPLERDLAAGL GVGRPTLREALQRLERDGWLSVRKGQPTRVNDYWRDGNLNIMAALARHHAKAPALFID YLLELRVALTPAYVRQAVEADAARVVAMLVEHDQLADDPASFADFDWRLQKNLARAAA NPVYALMLNSFDTAYLPLATEYFGGAANRRASARFYRRLMEAAMARDGALAAEVARAA MTAAMENWRADRAALDRAAGEELS" misc_feature 1677854..1678048 /locus_tag="Deba_1504" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(1677857..1677859,1677926..1677928,1677932..1677937, 1677959..1677973,1677977..1677982,1677989..1677991, 1678019..1678024,1678028..1678039) /locus_tag="Deba_1504" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 1678046..>1678432 /locus_tag="Deba_1504" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene 1678549..1680141 /locus_tag="Deba_1505" /db_xref="GeneID:9493968" CDS 1678549..1680141 /locus_tag="Deba_1505" /note="COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR006094:IPR004113:IPR016166:IPR016167:IPR 016164; KEGG: pfl:PFL_2767 alkyl-dihydroxyacetonephosphate synthase, PFAM: FAD linked oxidase domain protein; SPTR: Q4KD10 Alkyl-dihydroxyacetonephosphate synthase, PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain" /codon_start=1 /transl_table=11 /product="FAD linked oxidase domain protein" /protein_id="YP_003807467.1" /db_xref="GI:302342938" /db_xref="GeneID:9493968" /translation="MRRWNGWGDEGVLLDAPESAVVFIEGKVGPGRPPADASLERALA AVPTPRLSAPAFVDQSPLARLRHSLGESLPDMIAVRAGRLPGYVDGVAWPTSADEVRQ ALAWAAQAGAAVIPYGGGTSVVGHLDPGGLDRPTLSLDMSRCSALQELDGDGRLAVFG AGAAGPDVEAALRAHGFTLGHFPQSWEYSTLGGWIAARSSGQFSLGYGRIEALFVGGR LETPRGELVLPALPASAAGPDLRQVVLGSEGRLGVITQATVKISPAPQVEDLRGAFFA DQGQAVDAARSLAQSGLPLTMVRLSLPAETETSLRLAGGGRAMVALRKYLAWRGVGQG MCLMLYGFCGGRRAARWVMAEAGRVVARAGGVAVGRRPGRQWLRNRFSLPYLRNNLWA MGYAADTLETATPWRAVLPMAQAIEEALAGSLADEGERVHAFTHLSHVYAHGASVYTS YVFRLGQGPEQTLARWRKLKAAASRTIVANGGTISHQHGVGLDHKAYLPAEKGPLGLD LLRAQCAAMDPKGMMNPGKLLD" misc_feature 1678732..1680135 /locus_tag="Deba_1505" /note="FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277" /db_xref="CDD:30625" misc_feature 1678813..1679229 /locus_tag="Deba_1505" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene 1680157..1681725 /locus_tag="Deba_1506" /db_xref="GeneID:9493969" CDS 1680157..1681725 /locus_tag="Deba_1506" /note="COGs: COG0578 glycerol-3-phosphate dehydrogenase; InterPro IPR006076:IPR000447; KEGG: dal:Dalk_3177 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: glycerol-3-phosphate dehydrogenase; SPTR: Q08UG6 glycerol-3-phosphate dehydrogenase 2; PFAM: FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate dehydrogenase" /protein_id="YP_003807468.1" /db_xref="GI:302342939" /db_xref="GeneID:9493969" /translation="MERQAALESLGRPWDVIVIGGGINGAGVFRLAAASGLRTLLLEQ RDFSWGASSRTGKLVHGGLRYLLQGQPRTTWRSVHERERLLRGYGGLVEGLGFLFPLS KRLRLAKPLVHLALTGYELMAGRWSYKFHRPAAFAMLAPRCDQGRLCGGFAFQDATAD DARLVYRLLQEGRAMGGVAVNYCSARAFDRAHDGQARGLEAVDELTGRSYLARGRVIL NASGAWTDDVRAHLGQRPRLRRLRGSHLILPRWRLPLGQAVGLQHPADGRAMYVMPWE GATLVGTTDIDHEQDMTAEPRIQPEEGAYLLEALAYWFPSRGMGPGDVLSTYAGVRPV IDSGKKDPSKESRDHAVWSEHGVVTMTGGKLTTFGLVARQGLAAAAKWLRLSRRVEGP GLVAPRPTAADEDALAALPSRQARRLLGRYGELAPLVAALGDGQVVAGTDVLLAELRW AAANENVARLEDLMLRRTRLGLLSSDGGESVLDQIGAAIQAAAGWDEARWRKERQDYR RAWREAYSPGLLTC" misc_feature 1680244..1681701 /locus_tag="Deba_1506" /note="Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Region: GlpA; COG0578" /db_xref="CDD:30923" gene 1681764..1683341 /locus_tag="Deba_1507" /db_xref="GeneID:9493970" CDS 1681764..1683341 /locus_tag="Deba_1507" /note="COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: hch:HCH_04623 sugar (pentulose and hexulose) kinase; PFAM: carbohydrate kinase, FGGY-like; SPTR: Q2SDF1 Sugar (Pentulose and hexulose) kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain" /codon_start=1 /transl_table=11 /product="carbohydrate kinase, FGGY" /protein_id="YP_003807469.1" /db_xref="GI:302342940" /db_xref="GeneID:9493970" /translation="MSEEHNVLAIDVGTQSARAFVFGADGAMIDGARAVYDQPYHSPQ PGWAEQDPRMYWDKLAEACHGLWRRDLARPESLAAVAVTTQRNTVVCLDAQARPLRPA IVWLDQRRASDLRHLSRLWRALFGVAGLGGTIDYLMAEAEANWLRQHQPEIWRDTAHY LFLSGYINHKLTGRFADSTACTVGYMPFDYKAQRWAGDLSWKWSAIPVPRRALPELVS PGRELGRVSAEAAGYTGLPVGLPVIAGASDKSCEVLGAGCLSPHQGCIGYGTTATINV NCDKYIEPIALVPPYPSAKAGSYNLEVQIFRGFWMVSWFKEQFAQLEQEAARLRGVEA EVLLEELASDVPAGSMGLVLQPFWSPGLRHPGPEAKGAIIGFGGAHKKQHLYRAMLEG LAFALRDGRERIQRRDKTKLSELYVCGGGSRSDLAMQITADVFNLPASRPAHFEASGL GAAMLACLGCGLHEDLSGAVRAMTATGRTFEPDRSNVGVYDELYDKVYRRMYKRLRPF YQRIMAVTGYPAPAGKD" misc_feature 1681776..1683299 /locus_tag="Deba_1507" /note="Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]; Region: XylB; COG1070" /db_xref="CDD:31268" misc_feature 1681782..1682528 /locus_tag="Deba_1507" /note="FGGY family of carbohydrate kinases, N-terminal domain; Region: FGGY_N; cl09121" /db_xref="CDD:195797" misc_feature <1682811..1683134 /locus_tag="Deba_1507" /note="FGGY family of carbohydrate kinases, C-terminal domain; Region: FGGY_C; pfam02782" /db_xref="CDD:190423" gene 1683577..1684239 /locus_tag="Deba_1508" /db_xref="GeneID:9493971" CDS 1683577..1684239 /locus_tag="Deba_1508" /note="InterPro IPR011990; KEGG: sfu:Sfum_2878 hypothetical protein; SPTR: A0LMA3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807470.1" /db_xref="GI:302342941" /db_xref="GeneID:9493971" /translation="MKQAECLFVQRNDLPKARAAVESYRQVLKEDPQQVEASIKLARL LIFIGSQKDLQNEGRYYMEAIEVSRQALRYHPNDPGPHYWLGVACGLMADVSGGFTAL GLVDDTKQQMETVIKLDPTYDYGGAYRVLGRLHTKLPFIVGGDKEKAERYLRLALKLG PTYMLNHLYLADLLMVTDRYAEAEVVLRQVLAASAQRGLEPEDKLWKMHAGDALAHRI VR" misc_feature 1683598..1684164 /locus_tag="Deba_1508" /note="type IV pilus biogenesis/stability protein PilW; Region: type_IV_pilW; TIGR02521" /db_xref="CDD:131573" misc_feature 1683871..1684152 /locus_tag="Deba_1508" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cl02429" /db_xref="CDD:194311" misc_feature order(1683898..1683900,1683910..1683912,1683919..1683921, 1683970..1683972,1684021..1684023,1684033..1684035, 1684042..1684044,1684087..1684089,1684123..1684125, 1684135..1684137,1684144..1684146) /locus_tag="Deba_1508" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(1683961..1683966,1683970..1683975,1683982..1683987, 1684078..1684083,1684090..1684095,1684102..1684107) /locus_tag="Deba_1508" /note="binding surface" /db_xref="CDD:29151" gene 1684325..1686046 /locus_tag="Deba_1509" /db_xref="GeneID:9493972" CDS 1684325..1686046 /locus_tag="Deba_1509" /note="COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667:IPR003156:IPR004610; KEGG: ade:Adeh_2536 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Q2IKX4 Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ" /codon_start=1 /transl_table=11 /product="single-stranded-DNA-specific exonuclease RecJ" /protein_id="YP_003807471.1" /db_xref="GI:302342942" /db_xref="GeneID:9493972" /translation="MIDTLPEKKWRVRNQSPSEAARLARELGLPPLAGQLLCNRGLVD AASARDFLRPRLADLPGPDGFQGMGKAASLVAEAVQAGQVIGVAGDYDADGVTATALL VDFLRQCGGKVVWDLPHRLSEGYGFLPPRAQRLAQAGARLVITVDCGVSDIDGVGAAK ELGLTVIVTDHHQLPPGVAAPADAMVNPQQDACALAKHLAGVGVAFYLAAACRAELRA RGWFATRPAPNLRQSLDLVAVGTCADVVPLVGHNRILVREGLLVLNQGGRRGLRALAD ASGARGPLDAKDLAFALAPRINAAGRIDHPAQALELLLCQDEPQAAQRARLLDQLNQQ RRAIEQEMLGQALEDVASEPRHQRARLLVLGRAGWHRGVLGIVASRVVEATGKPALLF AIENGTAVGSGRSVEGFHLQRALVGVKHLLQHFGGHAQAAGMTTATANLPELWRQLDQ AAQAALPPGEGAASLELETAAHVSQLGPGLVDFLADLAPHGQANPEPLLLVEGATVLS ASSVGRGHLRLLLGGAAAPLPAFWLGHGELAADIGGPLSLACQPRVSTYGGRHLELFI HDLRPGV" misc_feature 1684409..1686031 /locus_tag="Deba_1509" /note="single-stranded-DNA-specific exonuclease RecJ; Region: recJ; TIGR00644" /db_xref="CDD:161976" misc_feature 1684556..1685047 /locus_tag="Deba_1509" /note="DHH family; Region: DHH; pfam01368" /db_xref="CDD:189957" misc_feature 1685483..1685656 /locus_tag="Deba_1509" /note="DHHA1 domain; Region: DHHA1; pfam02272" /db_xref="CDD:190268" gene 1686111..1686704 /locus_tag="Deba_1510" /db_xref="GeneID:9493973" CDS 1686111..1686704 /locus_tag="Deba_1510" /note="KEGG: afw:Anae109_3917 hypothetical protein; SPTR: A7HHA0 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807472.1" /db_xref="GI:302342943" /db_xref="GeneID:9493973" /translation="MNDPRVEIIKTVGTARFFGRRLRPLQWRPLLGREAGHAVQALAI LEAAGLFWRGLAWPDGRAADERSAPGDLPAVLGLELASLCRAPWLDDDDRDDLLSLDK HLRSARDYPQLSCAACAQQRAAGEDAADCRGCPHQPPPDAALAALEFVSLLADLPKEL RAVTLAAAGACADPARPWALPAQLALIHRYRRGEERR" gene 1686762..1687208 /locus_tag="Deba_1511" /db_xref="GeneID:9493974" CDS 1686762..1687208 /locus_tag="Deba_1511" /note="COGs: COG1832 CoA-binding protein; InterPro IPR003781:IPR016040; KEGG: tmz:Tmz1t_3640 CoA-binding domain protein; PFAM: CoA-binding domain protein; SPTR: C4KBQ8 CoA-binding domain protein" /codon_start=1 /transl_table=11 /product="CoA-binding domain protein" /protein_id="YP_003807473.1" /db_xref="GI:302342944" /db_xref="GeneID:9493974" /translation="MFGAIGRRLDDEEMRRILAQCKAIAIVGLSPRAERDSNMVARYL QGAGYQIIPINPAEESILGQRCYPDLLSVPQHIDIVDVFRRPDAVGPIASQAVACGAG ALWLQLGVSNQPAEDQARAAGLAVISDSCIKVEHMRLLGRANDALL" misc_feature 1686789..1687178 /locus_tag="Deba_1511" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 1687192..1687443 /locus_tag="Deba_1512" /db_xref="GeneID:9493975" CDS 1687192..1687443 /locus_tag="Deba_1512" /note="KEGG: sen:SACE_2473 integral membrane protein; SPTR: A4FCJ5 Integral membrane protein" /codon_start=1 /transl_table=11 /product="integral membrane protein" /protein_id="YP_003807474.1" /db_xref="GI:302342945" /db_xref="GeneID:9493975" /translation="MMRYYDKDRPGPRQGPQATGFWRRARLRARAILFGRVSREMVLW LGAALIVLALALALLGLSNLAGGRYQPVHDPAAQMMIRR" gene 1687483..1687974 /locus_tag="Deba_1513" /db_xref="GeneID:9493976" CDS 1687483..1687974 /locus_tag="Deba_1513" /note="KEGG: Os06g0321700; hypothetical protein; SPTR: Q5ZA87 Os06g0321700 protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807475.1" /db_xref="GI:302342946" /db_xref="GeneID:9493976" /translation="MKTMLRLSIASLFCLAALLAGCADGTTPITTRAIEERYLGMGEA VRMYEYGELLLADGRYKEAYTAFLSAEQNAYTSDLREAARKRRMWLGESIKAMEAGGQ PLPPPADLGEKPDLRAAAPQRPSTSPSTTMLEPPLESQQLLPGLRPGDPPIIIPAAPA SPR" gene complement(1687994..1688680) /locus_tag="Deba_1514" /db_xref="GeneID:9493977" CDS complement(1687994..1688680) /locus_tag="Deba_1514" /note="COGs: COG1351 alternative thymidylate synthase; InterPro IPR003669; KEGG: drt:Dret_1744 thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; SPTR: C8X3N1 Thymidylate synthase, flavin-dependent; TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: Thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent" /codon_start=1 /transl_table=11 /product="thymidylate synthase, flavin-dependent" /protein_id="YP_003807476.1" /db_xref="GI:302342947" /db_xref="GeneID:9493977" /translation="MTARRLKAPMRIIEPYHQILSLPDGASVLKLIELAGRTCYKSED MMSADSADAFVGRIIASKHHSVLEHSSCTVRFVCDRGVSHELVRHRLASFSQESTRYA NYAKDKFGNEITVIKPPFWPEDSEAYGLWLQSMRQAEAAYLTLLTMGAKPQEARSVLP NSLKTEVVMTANLREWRHVLDLRCGKPSHPQIRQVMLPLLAELKDRVPVAFDDIHEKY RPDVKAALNA" misc_feature complement(1688054..1688596) /locus_tag="Deba_1514" /note="Thymidylate synthase complementing protein; Region: Thy1; cl03630" /db_xref="CDD:194652" gene complement(1688702..1690036) /locus_tag="Deba_1515" /db_xref="GeneID:9493978" CDS complement(1688702..1690036) /locus_tag="Deba_1515" /note="KEGG: rfr:Rfer_2066 secretion protein HlyD; SPTR: Q21WR2 Secretion protein HlyD" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807477.1" /db_xref="GI:302342948" /db_xref="GeneID:9493978" /translation="MKLGLAKLFFIVAIAAISLASTGCAYLKIQREARDPLRGPVMSI DAATEMPTVIDKRTWEEGTWEAPNYNVRIFAPEITSQLRADLAATKLFADLPSASVSN DESAPLSLKVVVNAFGIEEAGSNAYRVPQVLANGALLPVYAATNVATKGQVDMGGYVM PSTNIVTSLQADVFLIDKGQTLLIVKRSYQTRIKLGAVSQRELFEGGDGFGYYGVAVG KAQGAKAIADLADMIARDPSWKLVPEYRRIAMAQRVARQKNTLQAKADAAIELLSLVR PVTYTASEVKLLHDELFDDEVRANLFNQYRARILGFDDAEEMPASQRLTPEQVRRLLD DTSLFTDMAIDEMDRTILEFAASAMLPPLRSKTKQGPGARSAATAESADATRIRGQVA DALVQKLKGDPLLQSMMLEIADKAIGRQWPAMKDMLVQLDSPAVKNYLTTRQ" gene complement(1690146..1690574) /locus_tag="Deba_1516" /db_xref="GeneID:9493979" CDS complement(1690146..1690574) /locus_tag="Deba_1516" /note="COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR015927:IPR019759:IPR011056:IPR006197; KEGG: tgr:Tgr7_3151 repressor LexA; PFAM: peptidase S24/S26A/S26B, conserved region; SPTR: B8GQJ6 Repressor lexA; PFAM: peptidase S24-like" /codon_start=1 /transl_table=11 /product="peptidase S24/S26A/S26B, conserved region" /protein_id="YP_003807478.1" /db_xref="GI:302342949" /db_xref="GeneID:9493979" /translation="MRLCDIGFEEIDIQDVEIPFMGVVAAGMPIEAVPEERAIAIPKD MVGRFRTFALEVRGTSMIDEHIAPGDVIVVEERQTAENGQMVVALINQSDVTLKKFYL ERDHIRLQPANPGMEPIILRHEDVRVLGVVAGLIRHYRHH" misc_feature complement(1690179..1690421) /locus_tag="Deba_1516" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature complement(order(1690281..1690283,1690395..1690397)) /locus_tag="Deba_1516" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 1690687..1691520 /locus_tag="Deba_1517" /db_xref="GeneID:9493980" CDS 1690687..1691520 /locus_tag="Deba_1517" /note="COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: dal:Dalk_3654 amidohydrolase 2; PFAM: amidohydrolase 2; SPTR: B8FGW2 Amidohydrolase 2; PFAM: Amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_003807479.1" /db_xref="GI:302342950" /db_xref="GeneID:9493980" /translation="MIIDVHTHIFPPEVIADRGRFLDGEPAFAAIYADPQAPMVDGPG LVRAMDADGVDVSWAMGFPWVKRENARLHNDYLAQAVAGSGGRLRGMACVRPPADWAL AEAERALAAGLHGLGELAFYDSDLDNQSLNPLCALCAEADKPLLLHTNEPVGHIYPGK APMTLAALYRLVKDNPRTKLVLAHMAGGLFFYALLKKEVSAVLANVWLDTAASPFLYK PRAYGLAVELLGADKLLYGSDYPLLRLPRYKKEFSAPDSGLDDSTLALVLGRSASRLI A" misc_feature 1690693..1691511 /locus_tag="Deba_1517" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" gene 1691886..1693808 /locus_tag="Deba_1518" /db_xref="GeneID:9493981" CDS 1691886..1693808 /locus_tag="Deba_1518" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004010; KEGG: sat:SYN_00971 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache domain protein; SMART: chemotaxis sensory transducer; SPTR: Q2LSK6 methyl-accepting chemotaxis protein; PFAM: Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_003807480.1" /db_xref="GI:302342951" /db_xref="GeneID:9493981" /translation="MQKRSLAFKLIFGGLLLALAPMALVGVLAVWNASDALEASARQQ SENLAASIAAAVQETLAEEMKSAVATAANPLVVAAVTADGEQQATSAKEVSNWFQAAF KDYSWLYEANLLANAQGLLIADGAGGKHLGVNVTEREYFKQAMAGKASISPPLRSLLS GKPIVVIAAPVLDGNGKPRGVIINTMKTDNLSATATKARVGQTGYPWMIDRQGVVVAH PDAKHILETNLAKSPGMEGITTKMLAGQDGVDTYVFQGFDKICGFAPVPLVGWSVGFT QNVDEFLAPAHAIRNLVLVIAGVVALLVGVGVFFFARGVSRPVMAAVVELNDGSSQVS VASTQLAKAGHSLAEGTSEQAASLEESSASLEELTSMTRQNADNASQADSLMREVHNM ATQAGSTMAEMLGSMNDISSAGMQISKIIKSIDEIAFQTNLLALNAAVEAARAGEAGA GFAVVADEVRSLAMRAAEAAKNTAELITGTIEKINHGTNLAGIMDKAFAGVTANAGKV AELISEISAASREQSQGITQLNTAVGEMDRVTQTIAANAEESASAAEELNAQAAAMHD IAAVLSTIVSGGVAQSAQPARRITAQPQRALPAPKAAASAKPAQVKAGAAPKAPAKKP NPKTEIPLDESDFVDF" misc_feature 1692336..1692545 /locus_tag="Deba_1518" /note="Cache domain; Region: Cache_1; pfam02743" /db_xref="CDD:145738" misc_feature 1693002..1693514 /locus_tag="Deba_1518" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(1693882..1695672) /locus_tag="Deba_1519" /db_xref="GeneID:9493982" CDS complement(1693882..1695672) /locus_tag="Deba_1519" /EC_number="1.6.99.5" /note="COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR012336:IPR011538:IPR019554:IPR019575:IPR 001450:IPR012335:IPR017896:IPR017900:IPR001949; KEGG: dat:HRM2_16600 NuoF; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: C0QAI3 NuoF; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase (quinone)" /protein_id="YP_003807481.1" /db_xref="GI:302342952" /db_xref="GeneID:9493982" /translation="MKRFRQHLLICGGTGCHAAGSADVRTALQNEIKKQGLADEVAVV ETGCNGFCAMGPVAVVYPGGTFYVSLTIDDVPELVQEHFLKGRPVERLMYKEPASKDI IPDMKDIPFFAHQQLIALRNRGLLDAESIDEYIARDGYRALAKALTEMSPQDIVNEVK KSGLRGRGGGGFPTGLKWEFCQRTPGEIKYVLCNADEGDPGAFMDRSILEADPHSVIE GMTIAAKAIGAHHGFVYCRAEYPLAIERLKLAIEKATEYGLLGDNILDTGFSFNLQIY QGAGAFVCGEETALMRSIEGKRGMPRPRPPFPAVKGLYDKPTVLNNVETWANVAPIII KGGDWYASIGTAGSKGTKVFALTGHVNNIGLVEVPMGTSLRTIIYDIGGGMPKKHRKF KAVQLGGPSGGCVPEQYLDLPCDYEEIIKAGAIMGSGGMIVMDDSTCMVDMARFFMEF VQDESCGKCTPCREGTRRMLQILEKICEGRGEMSDLDLLEELAAMIKDSALCGLGQTG PNPVLSTLRYFRDEYVAHIVDKKCPARTCVNLIEFRVDEALCKKCGQCFKACPVGAIS WEKKQPAKIDLTKCIKCKTCIENCKFDAIV" misc_feature complement(1695427..1695654) /locus_tag="Deba_1519" /note="Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:; Region: TRX_Fd_family; cd02980" /db_xref="CDD:48529" misc_feature complement(order(1695532..1695540,1695646..1695648, 1695652..1695654)) /locus_tag="Deba_1519" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48529" misc_feature complement(order(1695517..1695519,1695529..1695531, 1695625..1695627,1695640..1695642)) /locus_tag="Deba_1519" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48529" misc_feature complement(1694092..1695351) /locus_tag="Deba_1519" /note="NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]; Region: NuoF; COG1894" /db_xref="CDD:32078" misc_feature complement(1694683..1695198) /locus_tag="Deba_1519" /note="Respiratory-chain NADH dehydrogenase 51 Kd subunit; Region: Complex1_51K; pfam01512" /db_xref="CDD:144926" misc_feature complement(1694458..1694616) /locus_tag="Deba_1519" /note="SLBB domain; Region: SLBB; pfam10531" /db_xref="CDD:192616" misc_feature complement(1694215..1694352) /locus_tag="Deba_1519" /note="NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; pfam10589" /db_xref="CDD:192637" misc_feature complement(<1693903..>1694043) /locus_tag="Deba_1519" /note="Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]; Region: DsrA; COG2221" /db_xref="CDD:32403" misc_feature complement(1693975..1694040) /locus_tag="Deba_1519" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene complement(1695683..1696060) /locus_tag="Deba_1520" /db_xref="GeneID:9493983" CDS complement(1695683..1696060) /locus_tag="Deba_1520" /note="InterPro IPR012336:IPR012335; KEGG: dat:HRM2_16520 NADP-reducing hydrogenase, subunit B; SPTR: C0QAH5 NADP-reducing hydrogenase, subunit B" /codon_start=1 /transl_table=11 /product="NAD(P)-dependent iron-only hydrogenase iron-sulfur protein" /protein_id="YP_003807482.1" /db_xref="GI:302342953" /db_xref="GeneID:9493983" /translation="MAKLKISDLAKIRDRVHEQINLREDGAQVKITVHMGTCGIASGA RDVLNAAMDELDKSGRTDIIITTSGCAGLCSQEPMITVERLNEEPIKYVFVDNAKMRQ IFNRHAVEGEVQTQWALAKGSEQ" misc_feature complement(1695740..1695973) /locus_tag="Deba_1520" /note="Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:; Region: TRX_Fd_family; cd02980" /db_xref="CDD:48529" misc_feature complement(order(1695854..1695862,1695965..1695967, 1695971..1695973)) /locus_tag="Deba_1520" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48529" misc_feature complement(order(1695839..1695841,1695851..1695853, 1695944..1695946,1695959..1695961)) /locus_tag="Deba_1520" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48529" gene complement(1696172..1696720) /locus_tag="Deba_1521" /db_xref="GeneID:9493984" CDS complement(1696172..1696720) /locus_tag="Deba_1521" /note="COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594:IPR004358:IPR005467; KEGG: dat:HRM2_16530 sensory signal transduction histidine kinase (ATPase domain protein); PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: B0PGV2 Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_003807483.1" /db_xref="GI:302342954" /db_xref="GeneID:9493984" /translation="MEDLSLHLLDLVENSLNAGANLVEIDIDEQPLADRMTVTINDNG KGMDAQTLARASDPFFTTRTTRRIGLGLSLIKANAEAWGGGMELSSAPGVGTRLHFWF QLGHIDRQPLGDWPGTLLGLIMSRPGVEFVYRHRVGENDFEMDTRELRRELGPEALQS PAVVNLLRPQVRGALDELGSTA" misc_feature complement(1696415..1696699) /locus_tag="Deba_1521" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1696427..1696429,1696433..1696438, 1696451..1696453,1696457..1696459,1696505..1696516, 1696580..1696585,1696589..1696591,1696595..1696597, 1696601..1696603,1696670..1696672,1696679..1696681, 1696691..1696693)) /locus_tag="Deba_1521" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1696679..1696681) /locus_tag="Deba_1521" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1696508..1696510,1696514..1696516, 1696583..1696585,1696589..1696591)) /locus_tag="Deba_1521" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(1696723..1697490) /locus_tag="Deba_1522" /db_xref="GeneID:9493985" CDS complement(1696723..1697490) /locus_tag="Deba_1522" /note="COGs: COG1379 conserved hypothetical protein; InterPro IPR003141:IPR016195:IPR004013; KEGG: dth:DICTH_0765 PHP domain, PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: A1HP42 PHP C-terminal domain protein; PFAM: PHP domain" /codon_start=1 /transl_table=11 /product="PHP domain protein" /protein_id="YP_003807484.1" /db_xref="GI:302342955" /db_xref="GeneID:9493985" /translation="MRAVRADLHLHTCLSPCGDFDVTPAAVVGRAAELGLGLIAICDH NSAENVAAALVAARRLGPSAPHVLAGLEVTTAEEAHVLTLFDDLKAALTMQAMVFDHL QKEPNDPDIFGMQIVANADDEVEYFNPRLLIGATDLAVSEVARRTHELGGLLVAAHID RPSYSLVGQLGLIPPDLPLDAVEISRAGDPAQADRWLMGARLPVLTSSDAHFLRDVGA AWTELELARPCLAELALALAGQGGRRVLGHGRREGGA" misc_feature complement(<1696858..1697481) /locus_tag="Deba_1522" /note="PHP family phosphoesterase with a Zn ribbon [General function prediction only]; Region: COG1379" /db_xref="CDD:31569" misc_feature complement(1697260..1697472) /locus_tag="Deba_1522" /note="DNA polymerase alpha chain like domain; Region: POLIIIAc; smart00481" /db_xref="CDD:128757" gene complement(1697495..1699147) /locus_tag="Deba_1523" /db_xref="GeneID:9493986" CDS complement(1697495..1699147) /locus_tag="Deba_1523" /note="COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR009016:IPR001450:IPR007202:IPR010766:IPR 017896:IPR017900; KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; DRTGG domain protein; SPTR: C0QAH8 Iron-sulfur binding hydrogenase; PFAM: Iron only hydrogenase large subunit, C-terminal domain; DRTGG domain; Putative Fe-S cluster; 4Fe-4S binding domain" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_003807485.1" /db_xref="GI:302342956" /db_xref="GeneID:9493986" /translation="MNQAVSAHNRPIHALRILPEKCTGCVLCMKACPNQAIRVHDGKA VIRFDHCVACGACYRVCPADAIEPISSSLKRIKDFAHPVAVPSPALFAQFGYKVTPNQ VMLALRALGFEEVVDTCWTAEMVATAMTEYLQTHPETRPGISPTCPAVVRLIAMRFPS LVPNVMPLLSPQTLAAKWIKTRTSIERGWDIKSVGVFIISPCVAIRPTVEDPLSVKRP YVDGIICASEIYGHILHALPRLKDDSQRIQRASGVGIAWAGAGGQVNSVDCDYSLSVS GFSEVVNMLEMLEAGRFPELSFVEAHICAGGCLGGPLTVENRYRAASVKDSFIKRFGL HSDVDRDKIRELCRLGAFGWETKLLPHPLPPLAPDPLEALQKVQQIQEIKSRLPMLEC GVCGAPNCHTFAEDVALGRAQEGSCPYIKPMPSGETRGSDREDTVTVKDIVDKLGLEV LAGAGGLGRRVSAGYVSDLLSDVMAKAPAECLWLTVQTHQNVAAVAVLKDLAAVCLVG GRRPNDDTLAKAAEEGLPLLRSELDAYSLASRLSEIGLRGQA" misc_feature complement(1698215..1699108) /locus_tag="Deba_1523" /note="hydrogenase, Fe-only; Region: Fe_only_hydrog; TIGR02512" /db_xref="CDD:162896" misc_feature complement(1698947..1699018) /locus_tag="Deba_1523" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature complement(1698212..1698931) /locus_tag="Deba_1523" /note="Iron only hydrogenase large subunit, C-terminal domain; Region: Fe_hyd_lg_C; pfam02906" /db_xref="CDD:190471" misc_feature complement(<1697861..1698004) /locus_tag="Deba_1523" /note="acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional; Region: PRK04165" /db_xref="CDD:179760" misc_feature complement(1697519..>1697740) /locus_tag="Deba_1523" /note="DRTGG domain; Region: DRTGG; cl12147" /db_xref="CDD:196357" gene complement(1699197..1699652) /locus_tag="Deba_1524" /db_xref="GeneID:9493987" CDS complement(1699197..1699652) /locus_tag="Deba_1524" /note="COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: dth:DICTH_0761 anti-sigma regulatory factor; PFAM: ATP-binding region ATPase domain protein; SPTR: C1TN97 Anti-sigma regulatory factor (Ser/Thr protein kinase); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /codon_start=1 /transl_table=11 /product="anti-sigma regulatory factor, serine/threonine protein kinase" /protein_id="YP_003807486.1" /db_xref="GI:302342957" /db_xref="GeneID:9493987" /translation="MAQAATNENLKLVQTFPIKGGDFASAGSVSIMVKKLLKGIGLPS QVLRRAAIAAFEAEMNVVMYGGEAGGEVRLYVSPTKIRVETQDHGPGIPNLELAMTEG WSTATHEMREMGFGAGMGLPNIKRNSDRLDIHTAIGGGTSVNVEIDICN" misc_feature complement(1699224..1699556) /locus_tag="Deba_1524" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene complement(1699660..1700004) /locus_tag="Deba_1525" /db_xref="GeneID:9493988" CDS complement(1699660..1700004) /locus_tag="Deba_1525" /note="KEGG: tai:Taci_0690 hypothetical protein; SPTR: D1B9H3 Putative uncharacterized protein; manually curated; PFAM: DRTGG domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807487.1" /db_xref="GI:302342958" /db_xref="GeneID:9493988" /translation="MLLRDIVPLLDAVVLSGRRWLDIDIGRAFSSDLMSDVLAFSPEG TLLLTGLTNIQVVRTCEISGICAVLFVRGKVPGQQVIELAEQFNLPLLACNYSMFEAS GRLFQSGVKGCR" misc_feature complement(1699681..1699992) /locus_tag="Deba_1525" /note="DRTGG domain; Region: DRTGG; cl12147" /db_xref="CDD:196357" gene complement(1700020..1700526) /locus_tag="Deba_1526" /db_xref="GeneID:9493989" CDS complement(1700020..1700526) /locus_tag="Deba_1526" /note="COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR012336:IPR002023:IPR012335; KEGG: dat:HRM2_16590 NuoE; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: C0QAI2 NuoE; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase (ubiquinone) 24 kDa subunit" /protein_id="YP_003807488.1" /db_xref="GI:302342959" /db_xref="GeneID:9493989" /translation="MSLAEKSAYTEMPADVTPEMLTKIDQICADYRGKPGALIPVLQA CQGVVGYLPEAVQQRIADGLGMAGHEVFGVATFYSFFTMKPRGRNVVRVCLGTACYVR GGKETMDRLTQHLTLNADGTTEDRRFTVEGVRCLGACGVAPVVVINEDTHRKIMADSV INLVERYQ" misc_feature complement(1700026..1700460) /locus_tag="Deba_1526" /note="NADH-quinone oxidoreductase, E subunit; Region: nuoE_fam; TIGR01958" /db_xref="CDD:131013" misc_feature complement(1700026..1700265) /locus_tag="Deba_1526" /note="TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of...; Region: TRX_Fd_NuoE; cd03064" /db_xref="CDD:48613" misc_feature complement(order(1700125..1700133,1700251..1700253, 1700257..1700259)) /locus_tag="Deba_1526" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48613" misc_feature complement(order(1700110..1700112,1700122..1700124, 1700230..1700232,1700245..1700247)) /locus_tag="Deba_1526" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48613" gene complement(1700669..1701406) /locus_tag="Deba_1527" /db_xref="GeneID:9493990" CDS complement(1700669..1701406) /locus_tag="Deba_1527" /note="COGs: COG0368 Cobalamin-5-phosphate synthase; InterPro IPR003805; KEGG: dau:Daud_1313 cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; SPTR: B1I4H1 Cobalamin 5'-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase" /codon_start=1 /transl_table=11 /product="cobalamin 5'-phosphate synthase" /protein_id="YP_003807489.1" /db_xref="GI:302342960" /db_xref="GeneID:9493990" /translation="MKAFLLALQFLTVAMPSRDLAADADDFARSRAWYGVVGGLLGLA LAGAALLLRAMGLPALAVAGLLVALWGLLTRLLHLDGVADTADALGTTADRGRALEIM KDTHAGSFAVAAVSGVLLLKFAALASLEGAALPGALVAAPALARVAPVFISGMLPPAR GDKGLGAAVAGGPGLGREFACGASALAIALIAAGPAGALAALAVLAAGWGLGLWYRRR LGGYTGDTLGASVELCELSALLAVGVF" gene complement(1701417..1702472) /locus_tag="Deba_1528" /db_xref="GeneID:9493991" CDS complement(1701417..1702472) /locus_tag="Deba_1528" /EC_number="2.4.2.21" /note="COGs: COG2038 NaMN:DMB phosphoribosyltransferase; InterPro IPR017846:IPR003200; KEGG: glo:Glov_3082 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; SPTR: B3E975 Nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide/dimethylbenzimidazolephosp horibosyltransferase" /protein_id="YP_003807490.1" /db_xref="GI:302342961" /db_xref="GeneID:9493991" /translation="MDRLENIINRVKLPDYAIGQEAQRRLDSLTKPQGSLGRLEDIAK QLCIIRGGAAKLAQPKPAAAVFAADHGVAAGGVSAYPQEVTQQMIYNFLAGGAGINVL CRQAGADVWVIDVGVAGDMSQAQGLIQAKVAHGTADMTKGPVMTMNQALDAIVVGAQT AQRLIEKGYDLLIPGEMGIGNTTPCSAITAVICGLRPEQVMGRGTGVDDAGLSRKLAA LKTALDVNKPDPANPLEVLCKVGGLEIAAMCGYILEAAARGVPVMLDGFISTTAALVA GGLCPTAIDYCFSGHGSVEIGHRAQLEKLGLRPILTLEMRLGEGTGAAVAMNVLRAAV AIYSEMATFAEAGVTGH" misc_feature complement(1701429..1702454) /locus_tag="Deba_1528" /note="Phosphoribosyltransferase; Region: DBI_PRT; pfam02277" /db_xref="CDD:190270" misc_feature complement(1701435..1702385) /locus_tag="Deba_1528" /note="Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT), also called CobT; Region: DMB-PRT_CobT; cd02439" /db_xref="CDD:143332" misc_feature complement(order(1701435..1701437,1701450..1701455, 1701465..1701470,1701477..1701479,1701489..1701491, 1701498..1701500,1701522..1701524,1701528..1701545, 1701549..1701551,1701591..1701593,1702161..1702163, 1702167..1702172,1702179..1702187,1702209..1702214, 1702221..1702223,1702236..1702238,1702356..1702385)) /locus_tag="Deba_1528" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143332" misc_feature complement(order(1701447..1701449,1701516..1701524, 1701594..1701596,1701669..1701677,1701927..1701947, 1702209..1702211,1702221..1702223,1702239..1702241, 1702374..1702379,1702383..1702385)) /locus_tag="Deba_1528" /note="active site pocket [active]" /db_xref="CDD:143332" misc_feature complement(1701516..1701518) /locus_tag="Deba_1528" /note="putative cataytic base [active]" /db_xref="CDD:143332" gene complement(1702465..1703028) /locus_tag="Deba_1529" /db_xref="GeneID:9493992" CDS complement(1702465..1703028) /locus_tag="Deba_1529" /EC_number="2.7.7.62" /note="COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; InterPro IPR003203; KEGG: bmr:BMI_I1321 adenosylcobinamide kinase; PFAM: cobalbumin biosynthesis protein; PRIAM: Adenosylcobinamide-phosphate guanylyltransferase; SPTR: A9DBW3 Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase" /codon_start=1 /transl_table=11 /product="Adenosylcobinamide-phosphateguanylyltransferase" /protein_id="YP_003807491.1" /db_xref="GI:302342962" /db_xref="GeneID:9493992" /translation="MTEHTLILGGASSGKSAYAERLALALCPRPAYIATAQAWDDEMR QRVAKHIQRRGPAWTTIEEPLALEDALRAAARNHRLVLVDCLSLWLTNLMLQTPAGDA QLIERFDALAGLLGELGGQVLFVSNEVGLGIVPENALARRFRDLAGALHQTMAASCPR VLFVAAGLALALKGRPAGSTPEDLSRG" misc_feature complement(1702537..1703016) /locus_tag="Deba_1529" /note="Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is...; Region: CobU; cd00544" /db_xref="CDD:29982" misc_feature complement(order(1702564..1702566,1702573..1702578, 1702582..1702587,1702597..1702599,1702630..1702632, 1702636..1702647,1702987..1702989,1702993..1703001)) /locus_tag="Deba_1529" /note="homotrimer interface [polypeptide binding]; other site" /db_xref="CDD:29982" misc_feature complement(1702981..1703001) /locus_tag="Deba_1529" /note="Walker A motif; other site" /db_xref="CDD:29982" misc_feature complement(order(1702774..1702779,1702843..1702845, 1702867..1702869,1702876..1702878,1702921..1702923, 1702981..1702995)) /locus_tag="Deba_1529" /note="GTP binding site [chemical binding]; other site" /db_xref="CDD:29982" misc_feature complement(1702777..1702791) /locus_tag="Deba_1529" /note="Walker B motif; other site" /db_xref="CDD:29982" gene 1703110..1703460 /locus_tag="Deba_1530" /db_xref="GeneID:9493993" CDS 1703110..1703460 /locus_tag="Deba_1530" /note="KEGG: sfu:Sfum_1763 hypothetical protein; SPTR: A0LJ48 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807492.1" /db_xref="GI:302342963" /db_xref="GeneID:9493993" /translation="MLSWQELKNSPQIIGLIDWEMTPAQAFEAYQIKSIDAWKHRGLE DVYYFYVSTWQGRGQVILVRRTMVDSQEIAVAPAPETLVAACLAAGDGQQYPRGQLPL DEALRQWLRAELGL" gene complement(1703474..1704433) /locus_tag="Deba_1531" /db_xref="GeneID:9493994" CDS complement(1703474..1704433) /locus_tag="Deba_1531" /note="InterPro IPR001173; KEGG: chl:Chy400_1885 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C1ZM99 Predicted glycosyltransferase; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003807493.1" /db_xref="GI:302342964" /db_xref="GeneID:9493994" /translation="MSESVLRQTPASIPQREPVCDIIMPVRDNLELTCDCLELLRKNT ASPFRLIIIDDGSGQITARWLGNQVKRPGAPMVLIRHETSQGWTRSTNDGLAAGLAQR WAGQLERSSFASGYCLLLRRRLYQALGPLDESYPYGLWADIDYCRRAQDLGYFSAVAR DALVAHLQNRTFKIVDAQWRATALEGERMFIERWGYRLGFVWLPQERLGAPNPQAARQ MARLYNLADRGCVFYVLPKAGERAEEVLSAHGLCPHGNVFWEDGLASLIPRPLRARPR LAYLAGKGRARVLHRGDLARLDASCLPLTQLPPQAIGKTIRAK" misc_feature complement(1703933..1704370) /locus_tag="Deba_1531" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature complement(order(1704275..1704277,1704353..1704355, 1704359..1704361)) /locus_tag="Deba_1531" /note="active site" /db_xref="CDD:132997" gene complement(1704632..1706014) /locus_tag="Deba_1532" /db_xref="GeneID:9493995" CDS complement(1704632..1706014) /locus_tag="Deba_1532" /note="COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: gur:Gura_3701 peptidase U62, modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A5G7T6 peptidase U62, modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase" /codon_start=1 /transl_table=11 /product="peptidase U62 modulator of DNA gyrase" /protein_id="YP_003807494.1" /db_xref="GI:302342965" /db_xref="GeneID:9493995" /translation="MSLELDVTPALEAALGGGGEMAEAFLEDSSSLMVVIDNAKVEKV LGGQDLGVGLRLIKDLRTSYAFGNQLRAQALVALASDIAAERDAAPGRLHSFAPIAPG LAPAIVKPPIGVETARKVEMARTAEAAARAVDNRVRQVRVIYLERTQRVRVVNSLGVD ARDERTQVLMAIHCVAAEGAVLQTGYESIGGLCGLELFDDQPPEQAARRAARQAVMML AAQPAPGGSMAVVLHSAAGGTMIHEAVGHGLEADIVLEGMSVYKDQVGRQVASPLITV IDDGSLAGKRGSAGFDDEGVPTGRNVLIAGGVLKGYLHDRLSAMKMNARPTGNGRREN YRQRPIPRMTNTFIAPGHDDPEAIIADTPHGLLVKKMGGGQVNTTNGDFVFEVAEGYL IENGRVGRPVRGATLTGNGPKVLMDIDRVANDLGFGIGTCGKEGQGSPVADAQPTLRI PSIVVGGRQG" misc_feature complement(1704641..1705933) /locus_tag="Deba_1532" /note="Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]; Region: TldD; cl00398" /db_xref="CDD:193802" misc_feature complement(1705079..1705933) /locus_tag="Deba_1532" /note="Putative modulator of DNA gyrase; Region: PmbA_TldD; pfam01523" /db_xref="CDD:190021" gene 1706190..1706822 /locus_tag="Deba_1533" /db_xref="GeneID:9493996" CDS 1706190..1706822 /locus_tag="Deba_1533" /note="InterPro IPR001763; KEGG: dma:DMR_29550 rhodanese-like domain protein; SMART: rhodanese domain protein; SPTR: C4XHS2 rhodanese-like domain protein; PFAM: rhodanese-like domain" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="YP_003807495.1" /db_xref="GI:302342966" /db_xref="GeneID:9493996" /translation="MRKILVVLLAFSLLAAPLAAAARTAQKAKTITPLEAWEMMSQDA RDTFMIDVRPRHMYTLLGHPPRAYNIPWRFLTTDFQVEGGAYGGGAAEYTGYQLSAEP NPNFIGVVTSLFKPGDRLIVICQNGDQAADAADALVEAGFKNVHAVRHGVMGEPFIPA DEQKLAQKFSPHYGQGGRVNGWVYWGLPLVRSIEPRLIYPPDLKKMQSTQ" misc_feature 1706280..1706735 /locus_tag="Deba_1533" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125" /db_xref="CDD:193666" misc_feature 1706559..1706561 /locus_tag="Deba_1533" /note="active site residue [active]" /db_xref="CDD:29073" gene 1707014..1708450 /locus_tag="Deba_1534" /db_xref="GeneID:9493997" CDS 1707014..1708450 /locus_tag="Deba_1534" /note="COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR016038; KEGG: tac:Ta0351 acetyl-CoA acetyltransferase; SPTR: Q9HL79 Sterol carrier protein x/sterol carrier protein 2 related protein" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_003807496.1" /db_xref="GI:302342967" /db_xref="GeneID:9493997" /translation="MITFSDRQLKIPKMSRPVYLVTAGQSKFDRAMPYKRTEELCIDA LAMAARLIDKTPAELKKYIHTCYYGHFADHFGDQLLGEAVIHDRLGLDPLGNVGVKTG GATGGSTLWEAAKAVASGYSDCVLAMGWERMDEVPTDEGNNYISCAADKDWETPLGHI YTGYYAVMAQKYWQVFGKQEESFRRTLAEISVKHHGYARFNPFAQAPMKISVEDVLQS PVVAYPLRALDCCLMSVGAACAIVCDEQTALELTKGTANKPLRIWVTAGSHTLRPACR RDMAIPLLPNESADQYKDLGQRFPGGERYPGFTGFLAARMAAYYAYNMVGIQDPSEDL DVIELHDAFTISDVQTYEDVGIRPYGYGRDYVESGDCYHTNPKTGQPGKLPSNLSGGL IGCMHAVGATGIMQVFEIALQLWNRWAELHGDPALWEAFGRVKPDDWTDLQVKGAKRA MAISHAGVGSHVTATILMDPDCLLKADA" misc_feature 1707014..1708426 /locus_tag="Deba_1534" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK06365" /db_xref="CDD:180544" misc_feature 1707074..1708411 /locus_tag="Deba_1534" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature order(1707320..1707322,1708031..1708033,1708202..1708204) /locus_tag="Deba_1534" /note="active site" /db_xref="CDD:29416" gene 1708466..1709062 /locus_tag="Deba_1535" /db_xref="GeneID:9493998" CDS 1708466..1709062 /locus_tag="Deba_1535" /note="COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: tvo:TVN1259 nucleic-acid-binding protein; PFAM: protein of unknown function DUF35; SPTR: Q978Y2 Putative uncharacterized protein TVG1322512" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807497.1" /db_xref="GI:302342968" /db_xref="GeneID:9493998" /translation="MAIFGQVKVKNGQYKLKGDFHTIAPSLPIRNEDEGWRLMGVTNP RSITHIHMYGGEAAFFEALGQGRILGTRCDNPACEHPGTVYLPFRIHCPDCLGRNSVI DLTDVVRRTARVHTFMVCERSGAFNTLDKPIKFINVEFEGVATILMSYLVAGEPEIGL AVTPIFKTINPTYTITDLAFVAQGTTAAQLPMDYTFGV" misc_feature 1708601..1708966 /locus_tag="Deba_1535" /note="Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]; Region: COG1545" /db_xref="CDD:31734" misc_feature 1708643..1708762 /locus_tag="Deba_1535" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" gene 1709188..1710579 /locus_tag="Deba_1536" /db_xref="GeneID:9493999" CDS 1709188..1710579 /locus_tag="Deba_1536" /EC_number="1.1.2.4" /note="COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR016166:IPR016164:IPR006094:IPR004113:IPR 016167:IPR016168:IPR000542; KEGG: dat:HRM2_18570 GlcD2; PFAM: FAD linked oxidase domain protein; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: C0QBU7 GlcD2; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD" /codon_start=1 /transl_table=11 /product="D-lactate dehydrogenase (cytochrome)" /protein_id="YP_003807498.1" /db_xref="GI:302342969" /db_xref="GeneID:9493999" /translation="MHEAALEALRLAAGPPNVSVDVGRRLIFAADATGRMQPPAAVVR ALDAAQIGRILAACTAFGLKITPRGAGSGLTGGATPLAGGVVLDLAGMDKIIRVDQAD QLAVVQPGVVNADLQRAARQQGLFYPPDPASADFCTIGGNVAENAGGLRAVKYGVTRD YVLALQAVLADGRIMRVGSPTMKGVVGYDLTRLLVGSEGTLAVITEITLKLLPLPEAT ATLCALYAQVEAAALAVRRILAGGARPVALEFMDAASLRAVEAHAGLGLDPTAAAMIL VELDGPPEVLARQAQWIEATLTQSGGKDVRRASGGAEAEAIWAARRAMSPALRKIAAG KLNEDIVVPLGSLATMIRRLEGVAARRGVDIVSFGHAGDGNLHVNIMYDPADQAQTQA ARQALTDVFAQTLALGGTVSGEHGVGTAKLAGAAVELDPTALELMRAVKKVFDPAGIL NPGKGLPPLEGQR" misc_feature 1709302..1709721 /locus_tag="Deba_1536" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" misc_feature 1709335..1710549 /locus_tag="Deba_1536" /note="glycolate oxidase, subunit GlcD; Region: glcD; TIGR00387" /db_xref="CDD:129482" gene 1710594..1711775 /locus_tag="Deba_1537" /db_xref="GeneID:9494000" CDS 1710594..1711775 /locus_tag="Deba_1537" /note="COGs: COG0247 Fe-S oxidoreductase; InterProIPR009051:IPR004017:IPR012285:IPR017896:IPR 017900; KEGG: gem:GM21_0576 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C6DZR8 Putative uncharacterized protein; PFAM: Cysteine-rich domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807499.1" /db_xref="GI:302342970" /db_xref="GeneID:9494000" /translation="MAQAAAAAQACAQCGACQAVCPLYRATRQEEVSARGKLRLIGAL SKGLLSPGRDLAKALDVCLLCGRCSQKCPNQTPATQAQRAAREVLAPLAGRLSAQALF VDDVLADKTRLEALAKAGRWLWPADAGLNLRLPGLEGLEKLPRPAARFFLQDAPKIIH GPKGRPTVAFFVGCLANYLRPELARQVVTLLARRFTVVIPPDQGCCGLMAHGAGHAAA ARALAQAGMRAFAGADLVVTACASCAHAIASAWPELLDGPAAEQAQALAGRVAEVSGV LAEAGGVSAADPGRVAALHVPCHQSVGLADGPSPGRLLAAAGVELAAMDGHDQCCGGG GLFSLRRPDLSRAVFAPRRQALADSGARVLATSCSGCFVQWRRGLPAEVAVLHPVELL R" misc_feature 1710657..1711769 /locus_tag="Deba_1537" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" misc_feature 1711533..1711715 /locus_tag="Deba_1537" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene 1711991..1712434 /locus_tag="Deba_1538" /db_xref="GeneID:9494001" CDS 1711991..1712434 /locus_tag="Deba_1538" /note="InterPro IPR020365; KEGG: dma:DMR_37280 zinc resistance-associated protein precursor; SPTR: C4XM91 Putative zinc resistance-associated protein" /codon_start=1 /transl_table=11 /product="zinc resistance-associated protein precursor" /protein_id="YP_003807500.1" /db_xref="GI:302342971" /db_xref="GeneID:9494001" /translation="MKYMKSYAAFASLALVALLTTAVWAGPGGGMGPGHGRGMAMAQL TPEQQAAFEKDRAAFLTETEGLRKEMAAKAIELRTLQAQANPDPAKVRALSDELVDLG AQVAKKHNAYMSKYPGMGAGCGMMGGMGGGHGRMGGGMGMGFCGR" misc_feature 1712117..>1712317 /locus_tag="Deba_1538" /note="CpxP component of the bacterial Cpx-two-component system and related proteins; Region: CpxP_like; cl01482" /db_xref="CDD:197422" misc_feature order(1712210..1712212,1712222..1712224,1712231..1712236, 1712246..1712248,1712252..1712254,1712264..1712266, 1712273..1712275,1712285..1712287,1712297..1712299, 1712309..1712311) /locus_tag="Deba_1538" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:197366" gene 1712505..1714058 /locus_tag="Deba_1539" /db_xref="GeneID:9494002" CDS 1712505..1714058 /locus_tag="Deba_1539" /note="COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR003661:IPR003594:IPR009082:IPR004358:IPR 005467; KEGG: dba:Dbac_1016 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C4T0M4 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, nitrogen specific, NtrB" /protein_id="YP_003807501.1" /db_xref="GI:302342972" /db_xref="GeneID:9494002" /translation="MLVGGANNKNSAPWNWLVFCGVLLILLAVLSVLTENRLSRAREL MSNSLTNQGALIIRSLESASRASMRHGSTGQRVMMKVLVEEMIDHPGVLSLTLVGPGG WYVTASENPRDPVLALPKDMVALIAKGEPINLFDHGVLWVGRPFEPFRRFARQGRPLP EWACSPWEPPTTKEAVDANDHQRSDHGRRGRGRERERELVQNCPPEQLPPPPEAAMAP IFPAGDSPGGRPLKAYALVRMSTEEFAKIARQDLRHALYLAGLIFLAAASSAAAMVMF ARRRTAELERLRREMAQSQHMAAVGRLAASVAHEIRNPLSALRGLVQFLVKDQPKDSR QAEYGKVAVEEVDRLERVVSGLLEYARPKEPRRVTMDLAESAESTLALMHDDPRAQGV RITVSAADDLPLIQADPDQIRQLILNLVVNALEALDGRGSLDLRLRREGKFLVLEAAD DGPGLPDDVGEELFNPFFSTKERGSGLGLAIARRIAQAHGGQLFAGRSDLGGASLTLR LPISTEAAS" misc_feature 1712622..>1713056 /locus_tag="Deba_1539" /note="sensor protein ZraS; Provisional; Region: PRK10364" /db_xref="CDD:182411" misc_feature 1713393..1713587 /locus_tag="Deba_1539" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1713411..1713413,1713423..1713425,1713435..1713437, 1713444..1713446,1713456..1713458,1713465..1713467, 1713516..1713518,1713528..1713530,1713537..1713539, 1713549..1713551,1713558..1713560,1713570..1713572) /locus_tag="Deba_1539" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1713429..1713431 /locus_tag="Deba_1539" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1713738..1714031 /locus_tag="Deba_1539" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1713756..1713758,1713768..1713770,1713777..1713779, 1713846..1713848,1713852..1713854,1713858..1713860, 1713864..1713869,1713930..1713941,1713987..1713989, 1713993..1713995,1714008..1714013,1714017..1714019) /locus_tag="Deba_1539" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1713768..1713770 /locus_tag="Deba_1539" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1713858..1713860,1713864..1713866,1713930..1713932, 1713936..1713938) /locus_tag="Deba_1539" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1714055..1715425 /locus_tag="Deba_1540" /db_xref="GeneID:9494003" CDS 1714055..1715425 /locus_tag="Deba_1540" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR011006:IPR009057:IPR 002078:IPR002197:IPR020441; KEGG: dol:Dole_2807 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: A8ZXY3 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003807502.1" /db_xref="GI:302342973" /db_xref="GeneID:9494003" /translation="MSARQQTVLVVDDERGHRLMLRAHLEDAGYRVIDAADGEAALVQ LESEPVELVLMDQVMPRMDGLSALKRVKAQRPELPVLMMTAFGSIDNAVTALKEGADD YLTKPLDVEEVLIKVGRRLEQARLARQVEEQARRLGERFDFSALIGESHPMLRLKESL ALVAPTQATVLITGESGTGKEVAAQILHQHSKRAKGPLVGVNCAALPESLLESELFGH EKGSFTGATARRDGRFKTADGGTLFLDEVGEMSPSTQAKLLRVLQDGEYSPVGSDKVY TCDVRVIAATNRDLQQAVRDSEFREDLFYRLNVINIEMPPLRQRGEDIMLLADHFLRR FAAQNQRRLGGFGQNARLRMLAYRWPGNVRELINAVERAVIMSRGPQVELEDLPSSLQ SQPAVDQMLLRPGLSVRQAEKTLIILTLEATAGNRTQAAQMLGITRKTLQNKIKEYEA EGERLP" misc_feature 1714058..1715416 /locus_tag="Deba_1540" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 1714079..1714405 /locus_tag="Deba_1540" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1714088..1714093,1714220..1714222,1714244..1714246, 1714304..1714306,1714361..1714363,1714370..1714375) /locus_tag="Deba_1540" /note="active site" /db_xref="CDD:29071" misc_feature 1714220..1714222 /locus_tag="Deba_1540" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1714229..1714234,1714238..1714246) /locus_tag="Deba_1540" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1714370..1714378 /locus_tag="Deba_1540" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1714511..1715002 /locus_tag="Deba_1540" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1714574..1714597 /locus_tag="Deba_1540" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1714577..1714600,1714787..1714789,1714913..1714915) /locus_tag="Deba_1540" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1714775..1714792 /locus_tag="Deba_1540" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1714970..1714972 /locus_tag="Deba_1540" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1715273..1715398 /locus_tag="Deba_1540" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(1715496..1717175) /locus_tag="Deba_1541" /db_xref="GeneID:9494004" CDS complement(1715496..1717175) /locus_tag="Deba_1541" /note="COGs: COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; InterPro IPR006315:IPR005546; KEGG: dol:Dole_2458 outer membrane autotransporter; PFAM: Autotransporter beta- domain protein; SPTR: Q0YV05 Outer membrane autotransporter barrel; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain" /codon_start=1 /transl_table=11 /product="outer membrane autotransporter barrel domain protein" /protein_id="YP_003807503.1" /db_xref="GI:302342974" /db_xref="GeneID:9494004" /translation="MRLIKTAPAWLGRRRRGVVAVCLAVALFLALASSAPARMVNPID LPPGPLLGVYTAAFVNQELIDQGRATPTTLPFETGTTVEDVRLGQEDYYVRFYAYDAS RLKGGGVGSWLMRASSVRGLSLQEVADKFALPTLPDHIIAVRVPAGVVIRTGVAGPIV GWGEGGGQQILLMERISADDYVFGRPTSGPSLYYGPWVGGGNPGAVAGYLDSLATPAN YSDLDYVFNRLNFLEPAPLSQAMRAIGPEAHGAMVELSLQDSLLFLDGLGQRRQELRA SGPSGGGRDQTWARAVGARGDYQDSDRRVGFDYSLAGLAAGQDWALGQRWLLGLAVGF TRADFDWSANGGDGHADHLNLGLRADYDGGGYFVEGAVSAGLCRADVSRRVAFEGVDR LADGSPDGQTAAARLGGGLNLECAGWLVQPLAALTYAYSRQDSFDETNAGSLNLTLDE HEASTMVGRLELRAGRAFALAEGLDLRPEFGLAWLHFAPLDDRALRARLAGQPGWFSV TGDDDDRDALAPSLTLLAQAAGGWSFYGRYDGQLNSAASQHALQLGLCLSF" misc_feature complement(1715556..1716314) /locus_tag="Deba_1541" /note="Autotransporter beta-domain; Region: Autotransporter; cl02365" /db_xref="CDD:194296" gene complement(1717246..1718520) /locus_tag="Deba_1542" /db_xref="GeneID:9494005" CDS complement(1717246..1718520) /locus_tag="Deba_1542" /EC_number="2.7.7.27" /note="COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR011004:IPR005835:IPR005836; KEGG: sfu:Sfum_3485 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: A0LP04 Nucleotidyl transferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase" /codon_start=1 /transl_table=11 /product="Nucleotidyl transferase" /protein_id="YP_003807504.1" /db_xref="GI:302342975" /db_xref="GeneID:9494005" /translation="MKDTLAVIMAGGKGERLAPLTQDRSKPSVPFGGIYRLIDLTLSN VINSGIYKIMVLPQYKSQSLVDHLEAGWNIFNYDLGHYLRIVPPQMRTGEKWYQGTAD SVRQNAYLLDRDPSLRRVIILSGDHVYKMNYSLFRRYHEEHNADVTISVIEVDRQNAC QFGVVGVNDDFSIREFQEKPDNPSCIPGDPNHSLASMGIYLFRKEVMMQVLAEFDGTD FGHDIIPALLGRYKVVAYPYRRNNVISDYARIHDQQGRRRRVLEERTKDSGYWRDVGN LDAYWNANMDLCGVDPYFSLYGEMWPLRTHRMQFPPAKFVFQDERGNPPRAGKALDSL VGSGCIISGGIVRNSVLSSNVIVESWSEVDESVILEDVIVGRNCKIKKAIIDKHNYIP DNTQIGIDPSEDRKLFKVTPRGITVVPKGFFV" misc_feature complement(1717264..1718520) /locus_tag="Deba_1542" /note="glucose-1-phosphate adenylyltransferase; Provisional; Region: glgC; PRK00725" /db_xref="CDD:179099" misc_feature complement(1717699..1718505) /locus_tag="Deba_1542" /note="ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch; Region: ADP_Glucose_PP; cd02508" /db_xref="CDD:133002" misc_feature complement(order(1717858..1717863,1717867..1717869, 1718143..1718148,1718221..1718223,1718227..1718229, 1718485..1718490,1718494..1718496)) /locus_tag="Deba_1542" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:133002" misc_feature complement(order(1718182..1718187,1718200..1718202, 1718251..1718253,1718260..1718262,1718269..1718271, 1718326..1718328,1718335..1718337)) /locus_tag="Deba_1542" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:133002" misc_feature complement(1717258..1717545) /locus_tag="Deba_1542" /note="Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-...; Region: LbH_G1P_AT_C; cd04651" /db_xref="CDD:100056" misc_feature complement(1717516..1717545) /locus_tag="Deba_1542" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:100056" misc_feature complement(order(1717258..1717260,1717363..1717365, 1717462..1717464,1717471..1717473,1717477..1717479, 1717510..1717515,1717525..1717527)) /locus_tag="Deba_1542" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:100056" misc_feature complement(order(1717261..1717263,1717360..1717365)) /locus_tag="Deba_1542" /note="sulfate 1 binding site; other site" /db_xref="CDD:100056" gene 1719138..1721213 /locus_tag="Deba_1543" /db_xref="GeneID:9494006" CDS 1719138..1721213 /locus_tag="Deba_1543" /note="COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dac:Daci_3112 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A9BU35 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003807505.1" /db_xref="GI:302342976" /db_xref="GeneID:9494006" /translation="MGNWRKAGRAALFLPALILALALWAVGDCRAEAAEDKSAQATTQ EQADNKQKINLEDMQVLGKADSAVVQSTSATVLDNEQIVGRVYVTPMDMLKLSPGVSI SQYHQGGVVPAVQMRGFSTVGHSRDGAIALNGVPLNTLDNADTNVIIPMEVEDIEVVK GPSSPFFGNFNSAGSIGFRTYQSGDFTRAKLSYGSFNTQDAAAVIARGDGKLDQIYSG EVYHTDGYQDNCDWDKQIASGRWNYRFTDQLQAGMGLRFYNTRWDSAGYIPQSVYDSN PQRAVSDVNGGWRKWGLVDGHADYALTDTSKLRFLAWYTQEDYNRWYQNWISSAQKVG GNYGSQYQRPREAFGSSLAYHYNGQVLERDTGVVFGVSWQREFQEYRYWNLVVGNGRN KGSMTQDDELTLYTTALYGQVDYRVLKPLRFIVGARYDMMNGELDSKLTPANSGDRNG PEIFSPKLGLIYTVCDGWDLFANYSQGFALPGGTEFVSRSYLEPAIRTQYEAGLRANP NGWSSYILSIWRLDTKDDFQPTLADPNKYENAGETRREGVEVGADFLPWKALRLHVDY AYIHSEYLSYVSGGKSYDGNELPSVPNNIFNAEIAWAPPQGLGARLNYRLQSEWNIAA DNIVKADGFDVVCAQVSYKFNKRYTLALDVINLFDRKYSEYLGSANGQLTYAPADPLS AYLTLTIDW" misc_feature 1719348..1721207 /locus_tag="Deba_1543" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:162535" misc_feature 1719354..1721210 /locus_tag="Deba_1543" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1719354..1719383,1719411..1719440,1719477..1719494, 1719525..1719548,1719585..1719617,1719651..1719677) /locus_tag="Deba_1543" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(1720164..1720166,1720245..1720247) /locus_tag="Deba_1543" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1721237..1722007 /locus_tag="Deba_1544" /db_xref="GeneID:9494007" CDS 1721237..1722007 /locus_tag="Deba_1544" /note="COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: ppd:Ppro_1246 ABC-type Co2+ transport system periplasmic component-like protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: C8NCY5 Putative uncharacterized protein; PFAM: Nickel uptake substrate-specific transmembrane region" /codon_start=1 /transl_table=11 /product="Nickel transport complex, NikM subunit, transmembrane" /protein_id="YP_003807506.1" /db_xref="GI:302342977" /db_xref="GeneID:9494007" /translation="MKNMKQLKSLTVVAAMSLTLALAGLAQAHDLWLSANQPAEGKAL SVLVGYGHGFPAGEEIEFDMLEPVEIIGAQGKIATKPGQKQEFVSDAPLAAGTYVVTG GRKAQWYTKTPAGSVNVPKNEAPEAISCLRSVKYAKAIVNLGAAGDVSQPVGQTLEIV PLANPGALKVGDDLPVRVLFEGKPLAKVEVLGLYAGFSQHEGSYAFYARTDKDGKAYV KLSAAGQWLVLAKHKVPFADKAQCDEYAHTATLTFDVK" misc_feature 1721255..1722004 /locus_tag="Deba_1544" /note="ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: CbiK; COG5266" /db_xref="CDD:34863" misc_feature 1721312..1721944 /locus_tag="Deba_1544" /note="Nickel uptake substrate-specific transmembrane region; Region: NikM; pfam10670" /db_xref="CDD:151174" gene 1722004..1722516 /locus_tag="Deba_1545" /db_xref="GeneID:9494008" CDS 1722004..1722516 /locus_tag="Deba_1545" /note="KEGG: dvl:Dvul_2037 hypothetical protein; SPTR: Q72DI1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807507.1" /db_xref="GI:302342978" /db_xref="GeneID:9494008" /translation="MTTKLRRETQAAGLVWGPALAALLLAGLLFVGGRPALAHGVSLE AGQGRAAWVLAQYSDGEPMSFAKVRVLGPRGQTYQMGNADASGRFCWQPDQPGQWTAV IEDGQGHRGQVSLDWTGGDAPVASQRGGGEMVAQPLWTRALLGLSAIFCLAGLVFWLL GRRGAAVDKG" gene complement(1722568..1723668) /locus_tag="Deba_1546" /db_xref="GeneID:9494009" CDS complement(1722568..1723668) /locus_tag="Deba_1546" /note="COGs: COG0628 permease; InterPro IPR002549; KEGG: dol:Dole_1102 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: A8ZX53 Putative uncharacterized protein; PFAM: Domain of unknown function DUF20" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807508.1" /db_xref="GI:302342979" /db_xref="GeneID:9494009" /translation="MSHNQPFASSTSRWFFAACILFVLYCAYLLVEPFLTSIFLAIVL VVVGGPVYDLMLKLTRQRRGLASALTCLLFILIIVVPLVLITGVITSQALDLYNTVSA MLAGNSLSEMFNSGMGRLGPFLDKLEEHTGITRMDILQHAAEALKYVSNLLYSNLTDL LRGATNLAIGFALMMFVAFYLLMDGQSMAQKAIRLSPLPADTTNQIRDDILSTLRTTM RGTVFLAVIQGTAGGLGFGVFGVPHALFWGTVMVFASVVPLVGTALLFIPAGTYLILS GDVFQGVGVMIWCEASQVICDNFLRPRLIGGGNIHPLLTFFSVLGGLSVFGMVGLILG PLVLAVLISLLEVYEHYFMDSPIETPGDGPTP" misc_feature complement(1722583..1723632) /locus_tag="Deba_1546" /note="Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628" /db_xref="CDD:30973" misc_feature complement(1722625..1723629) /locus_tag="Deba_1546" /note="Domain of unknown function DUF20; Region: UPF0118; cl00465" /db_xref="CDD:186015" gene complement(1723665..1724495) /locus_tag="Deba_1547" /db_xref="GeneID:9494010" CDS complement(1723665..1724495) /locus_tag="Deba_1547" /note="COGs: COG0388 amidohydrolase; InterPro IPR003010:IPR001110; KEGG: ade:Adeh_3575 nitrilase/cyanide hydratase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Q2IFI3 Nitrilase/cyanide hydratase; PFAM: carbon-nitrogen hydrolase" /codon_start=1 /transl_table=11 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase" /protein_id="YP_003807509.1" /db_xref="GI:302342980" /db_xref="GeneID:9494010" /translation="MLAAVIQMNSSADRQANLAQAADLLRRAAGQGAGLCVLPEHFAH MQPEGLPLAEPQTIAGPTVSFLATLARELGLWIVGGTFAERARTPGKAHNTCPVLDPT GRLVGVYRKIHLFDLAAPGQAPLLESRRVAPGRRLTVVDTPIGRLGPCVCYDLRFPEL HRRLRLLGAQVIAAPSAFTKLTGQAHWELLVRARAVENACFVLAAAQWGPHGQGRESF GQAMITNPWGEVVAQCPPGPGLALAEVNAEVVEGFRRRLDSTLHARLLPRAWRAKGRP " misc_feature complement(1723704..1724492) /locus_tag="Deba_1547" /note="Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases); Region: nit; cd07572" /db_xref="CDD:143596" misc_feature complement(order(1723965..1723967,1724028..1724033, 1724037..1724042,1724115..1724117,1724151..1724153, 1724163..1724165,1724214..1724216,1724376..1724378)) /locus_tag="Deba_1547" /note="putative active site [active]" /db_xref="CDD:143596" misc_feature complement(order(1724040..1724042,1724163..1724165, 1724376..1724378)) /locus_tag="Deba_1547" /note="catalytic triad [active]" /db_xref="CDD:143596" misc_feature complement(order(1723704..1723706,1723710..1723715, 1723722..1723727,1723815..1723817,1723905..1723910, 1723914..1723922,1723926..1723931,1723938..1723943, 1724007..1724012,1724016..1724030,1724037..1724039, 1724091..1724099,1724157..1724162)) /locus_tag="Deba_1547" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143596" gene 1724651..1725496 /locus_tag="Deba_1548" /db_xref="GeneID:9494011" CDS 1724651..1725496 /locus_tag="Deba_1548" /note="InterPro IPR003018; KEGG: dol:Dole_1615 response regulator receiver protein; PFAM: GAF domain protein; SPTR: A9A019 Response regulator receiver protein; PFAM: Protein of unknown function, DUF484" /codon_start=1 /transl_table=11 /product="phytochrome sensor protein" /protein_id="YP_003807510.1" /db_xref="GI:302342981" /db_xref="GeneID:9494011" /translation="MNGPPDIGALLEQARRNEEILRRTDQLEEFLLSPRALRPLLEGL CQRVAAIYGLDAVSLALADDHAGLRLALEADGPQALPAGCFHCARVELRMLVGDLERP LLSNRASDEALRFLFGQRGGLCSAAVLPLWSRGRWLGSLNLGSTSPERYHQGLETHFV RRLAAKTAHSLDAAVLYEQNRLFERREAAMEMAGAACHELAQPLTALALRLETLMRGL PEGDPLRGQMNSLTAEVDRVGELLRKISEVNRYVTKPYAQGLRIIDLRAASAAGKPST PPEEA" misc_feature <1724669..1725163 /locus_tag="Deba_1548" /note="Protein of unknown function, DUF484; Region: DUF484; cl01228" /db_xref="CDD:186393" misc_feature 1724711..1725193 /locus_tag="Deba_1548" /note="FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203" /db_xref="CDD:32385" gene 1725501..1725920 /locus_tag="Deba_1549" /db_xref="GeneID:9494012" CDS 1725501..1725920 /locus_tag="Deba_1549" /note="COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR011146:IPR001310:IPR011151; KEGG: ctt:CtCNB1_3676 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: D0J4Y9 Histidine triad (HIT) protein; PFAM: HIT domain" /codon_start=1 /transl_table=11 /product="histidine triad (HIT) protein" /protein_id="YP_003807511.1" /db_xref="GI:302342982" /db_xref="GeneID:9494012" /translation="MSDETCIFCDIAANKMPAFRIYEDDRTLAFADINPATPGHTLVI PKQHYVNIMELTPGDVAAVHQTVQRVARAIKATLKPEGIMIAQLNGAAAGQVIMHYHV HLIPRNPGDALSAMSWQMKPGDMAQIEKLAAQIASVL" misc_feature 1725513..1725821 /locus_tag="Deba_1549" /note="HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life...; Region: HINT_subgroup; cd01277" /db_xref="CDD:29590" misc_feature order(1725795..1725797,1725801..1725803,1725807..1725815) /locus_tag="Deba_1549" /note="HIT family signature motif; other site" /db_xref="CDD:29590" misc_feature 1725801..1725803 /locus_tag="Deba_1549" /note="catalytic residue [active]" /db_xref="CDD:29590" gene complement(1725976..1727484) /locus_tag="Deba_1550" /db_xref="GeneID:9494013" CDS complement(1725976..1727484) /locus_tag="Deba_1550" /note="COGs: COG3264 Small-conductance mechanosensitive channel; InterProIPR000595:IPR018490:IPR011066:IPR010920:IPR 006685:IPR014710; KEGG: mxa:MXAN_2799 mechanosensitive ion channel/cyclic nucleotide-binding domain-containing protein; PFAM: MscS Mechanosensitive ion channel; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: B5II47 Mechanosensitive ion channel/cyclic nucleotide-binding domain protein; PFAM: Mechanosensitive ion channel; Cyclic nucleotide-binding domain" /codon_start=1 /transl_table=11 /product="MscS Mechanosensitive ion channel" /protein_id="YP_003807512.1" /db_xref="GI:302342983" /db_xref="GeneID:9494013" /translation="MDLQQLPGYLTMALPLLAYAAFLVVMHVGQRRLGALAALKVPLH LAALGLLLRVGAANLPTPWPARLLPYSEALIIFAGVVLIIRAVDAIGVGYLLARLQKR HVPHILRQGAILLADFIAALIVLRQYLNLDVTSLVATSAVVSFVVGLASQDLLGSVLA GLVIGVERPIAHGNWVNVNGMEGRVVDVTWRRTRIETRDGDFILLPNNVVMKDTVTNY TLPSPLHRVRVEVGAHYRHPPNQVKAAMIAAARQCPEVLAEPAPSVFLESFGDSSINY RLNAWTMDYGRQEAIRDEVNCLIWYQFQREGIEIPFPIRTLVAPPPEPSAHEQRQDQI ERIVPLLLDSEVFQGVSAPDLLAVADRMNLLTFGAGEMLFNEGDHGDSLYLLAQGRAQ VIKRTPEGGQALLATLEEGQCLGEMALLLGLPRTASVRLERDSRVVEIKADLFRELIR AHPSFLDHLSRLVDQRQRANQELAQALAQQKTADAAGGIGQILRKIKSALGL" misc_feature complement(1726552..1727043) /locus_tag="Deba_1550" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" misc_feature complement(1726108..1726449) /locus_tag="Deba_1550" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature complement(order(1726204..1726212,1726237..1726242)) /locus_tag="Deba_1550" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature complement(order(1726120..1726128,1726138..1726146)) /locus_tag="Deba_1550" /note="flexible hinge region; other site" /db_xref="CDD:28920" gene complement(1727531..1728184) /locus_tag="Deba_1551" /db_xref="GeneID:9494014" CDS complement(1727531..1728184) /locus_tag="Deba_1551" /note="COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR005744:IPR004254; KEGG: dat:HRM2_17730 channel protein (hemolysin III family protein); PFAM: Hly-III family protein; SPTR: C1SGF8 Channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family" /codon_start=1 /transl_table=11 /product="channel protein, hemolysin III family" /protein_id="YP_003807513.1" /db_xref="GI:302342984" /db_xref="GeneID:9494014" /translation="MVLRLREPVNGLSHLVGAILSVIALAVLVTLAAKEATAWHVVSF SIYGSSMVLLYTASSLYHMLPLSEKGTRIFRAIDHIMIYMLIAGTYTPFCLVAIRGGW GWSIFGAAWGMALVGMIFTLVWMDAPRWLTTIFYLSMGWLCVVAIYPLVQAIPLGGML WLAGGGLSYTIGAAIYGFKKPDPWPGILGFHEIFHFFVLGGSFCHFWLMYSYILDMP" misc_feature complement(1727546..1728169) /locus_tag="Deba_1551" /note="Haemolysin-III related; Region: HlyIII; cl03831" /db_xref="CDD:186601" gene 1728555..1730375 /locus_tag="Deba_1552" /db_xref="GeneID:9494015" CDS 1728555..1730375 /locus_tag="Deba_1552" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764; KEGG: dsy:DSY4721 hypothetical protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: Q24N82 Putative uncharacterized protein; PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003807514.1" /db_xref="GI:302342985" /db_xref="GeneID:9494015" /translation="MGLNFFNRDDRDMRFVLFEWLDMEKVLGYEKFSEFALDDFAMMF DEAYKIARDFIGPTFKDGDEIGVKYEGGQVTVPPSFHEAFKAMAENGWIGLASPPEYG GQGMPAVVSGVINEFFNAAHFAFMTYVGLLVSNSGVIVNYGTDKDKEMFVERMITGEF GGTMCLTEPDAGSDVGDLLTKATPDPDAGDPRIYKIEGSKRFITCGRHDMVDVIIHLV LARIEGAPKGTKGISLFIVPTKWVNEDGSIGEDNDVFCTGIEHKMGIHGSATCSLSFG ENGKCRGILLGEPNSGMAKMFQMMNEARIGCGVQANAAAAAAYDAALQYAKERVQGPP FVDRSKPRVPIIQHEDVRRMLMNLKAGTEAARAMIAYNFWMVDVAHNDPDPEVRKAMG MRSELMTPLLKSYITDMGAQLCRDAMQILGGVGYCAEFPIEQHYRDIKILSIWEGTNF IQSLDLVGRKLAMAGGSVYQNFLKEIFDYTAAYKEDPDFAKEFKMLFKAAQATGDISM KYMTYFKEGKIQLIPLSSTRFLDCLAEVTMAYLMLQQGLIARDKLAEAKEGSANHAYY TGKVASVKYFCNNFLPNIFARHTAISQEDTSAIDIPEASF" misc_feature 1728579..1728659 /locus_tag="Deba_1552" /note="Acyl-CoA dehydrogenase N terminal; Region: AcylCoA_DH_N; pfam12418" /db_xref="CDD:193019" misc_feature 1728585..1730357 /locus_tag="Deba_1552" /note="acyl-CoA dehydrogenase; Provisional; Region: PTZ00456" /db_xref="CDD:185635" misc_feature 1728681..1729937 /locus_tag="Deba_1552" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1728954..1728956,1729044..1729046,1729050..1729052, 1729158..1729160,1729164..1729166,1729884..1729892, 1729896..1729898,1729902..1729904) /locus_tag="Deba_1552" /note="active site" /db_xref="CDD:173838" misc_feature 1729968..1730363 /locus_tag="Deba_1552" /note="Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806" /db_xref="CDD:193282" gene 1730503..1731861 /locus_tag="Deba_1553" /db_xref="GeneID:9494016" CDS 1730503..1731861 /locus_tag="Deba_1553" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR011006:IPR009057:IPR 002078:IPR002197; KEGG: dba:Dbac_0335 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: C7LVC0 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003807515.1" /db_xref="GI:302342986" /db_xref="GeneID:9494016" /translation="MTETGEKNLALGVLVVDDEANIRKTVSYCLSDQGHRVVAVGNAA DALEQARRRSFDLAFVDLRLGAENGMALIPALLADSPWVKIVVITAHASIESVVEAVK LGAADYLAKPFTPDQLRLVAGRMGQLRRMESELAALQADARGRGPEARLQSRSAGMQR LIETARKAADSEAIVLLCGESGTGKSVFAKAIHRWSPRAAKPMGVVACPAMPADLLES ELFGHAKGAFTGAVRDNPGRIAACEGGTLFLDEIGDMAPTVQAKLLRFIQDKEYERLG ESKARKADVRIVAATNADLEGRVADGRFREDLFYRLNVICLTIPPLRQRPEDIMPLAA DFLAHFCRANHKAISGFSPRAEQALIGHAWPGNVRQLRNAIERAVILGGGALVDLADL PGDIAPDIGAPAIGDRAPLALIEELHIRGVLANTASLQEAAEVLGIDQATLWRRRKAY GV" misc_feature 1730539..1731858 /locus_tag="Deba_1553" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 1730542..1730859 /locus_tag="Deba_1553" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1730551..1730556,1730683..1730685,1730707..1730709, 1730767..1730769,1730824..1730826,1730833..1730838) /locus_tag="Deba_1553" /note="active site" /db_xref="CDD:29071" misc_feature 1730683..1730685 /locus_tag="Deba_1553" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1730692..1730697,1730701..1730709) /locus_tag="Deba_1553" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1730833..1730841 /locus_tag="Deba_1553" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1730968..1731465 /locus_tag="Deba_1553" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1731037..1731060 /locus_tag="Deba_1553" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1731040..1731063,1731250..1731252,1731376..1731378) /locus_tag="Deba_1553" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1731238..1731255 /locus_tag="Deba_1553" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1731433..1731435 /locus_tag="Deba_1553" /note="arginine finger; other site" /db_xref="CDD:99707" gene 1732031..1733863 /locus_tag="Deba_1554" /db_xref="GeneID:9494017" CDS 1732031..1733863 /locus_tag="Deba_1554" /note="COGs: COG5002 Signal transduction histidine kinase; InterProIPR000014:IPR003660:IPR003661:IPR003594:IPR 009082:IPR013656:IPR004358:IPR005467; KEGG: dba:Dbac_0336 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C7LVC1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_003807516.1" /db_xref="GI:302342987" /db_xref="GeneID:9494017" /translation="MTLKRKILTGYGVSFVLMGLVVAWAIANLIALGRATDAILSENY RSILAAENMIDALERQDSGVLLTFLGDDGEGIAQYRENEAVFLEWLARAKDNVTVRGE ADLVRSIEADYGAYRKLFSAPGGPRGAEAAARPGVRYQQAIHPIFAKVRQACIDLRNL NERTMYAASVRAGDVARRAIWSTALVAALALTAALAFSLLLSERLVRPLRRVTEASRK ISSGDYGVQVPVEAGDELGNLAGEFNQMARRLASYHEMNIEQIIAEKNKSEAIISSIE DGLVVFDTNLRVASINPAARALLEMPLGQGSAPSCADILPDERLCQIIRAAVENGARP ALPDERRVIAIRKGETTKECLFSVTAIRGGDRRLSGVVLLLRDVTRLKEVERLKSEFV MAASHELRTPLTSLGMSVGLLLEHAVAGLAERDRELLQAAHEEIQRMKALVDDLLDLS KIEAGRIELEFESVSVATLFDHAKAVFKNQLEMNGVSLTAELDAAAPPVRADANKITW VLTNLISNALRYVGKGGHIALAASVIGPCAHLSVRDDGPGIPPEFQSKIFQKFVQVQG REAGGTGLGLAICKEIVRAHGGAIWVESAPGQGSKFIFTLPLAR" misc_feature 1732643..1732780 /locus_tag="Deba_1554" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cd06225" /db_xref="CDD:100122" misc_feature order(1732643..1732648,1732655..1732660,1732664..1732669, 1732676..1732681,1732685..1732687,1732733..1732738, 1732742..1732747,1732754..1732759,1732763..1732768, 1732775..1732780) /locus_tag="Deba_1554" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100122" misc_feature 1732811..1733848 /locus_tag="Deba_1554" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature 1733183..1733383 /locus_tag="Deba_1554" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1733201..1733203,1733213..1733215,1733225..1733227, 1733234..1733236,1733246..1733248,1733255..1733257, 1733312..1733314,1733324..1733326,1733333..1733335, 1733345..1733347,1733354..1733356,1733366..1733368) /locus_tag="Deba_1554" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1733219..1733221 /locus_tag="Deba_1554" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1733555..1733848 /locus_tag="Deba_1554" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1733564..1733566,1733576..1733578,1733585..1733587, 1733654..1733656,1733660..1733662,1733666..1733668, 1733672..1733677,1733747..1733758,1733804..1733806, 1733810..1733812,1733825..1733830,1733834..1733836) /locus_tag="Deba_1554" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1733576..1733578 /locus_tag="Deba_1554" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1733666..1733668,1733672..1733674,1733747..1733749, 1733753..1733755) /locus_tag="Deba_1554" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1733872..1734588 /locus_tag="Deba_1555" /db_xref="GeneID:9494018" CDS 1733872..1734588 /locus_tag="Deba_1555" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR011006:IPR013105:IPR011990:IPR 019734:IPR013026; KEGG: nth:Nther_0252 response regulator receiver protein; PFAM: response regulator receiver; hypothetical protein; SMART: response regulator receiver; SPTR: B2A4S9 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807517.1" /db_xref="GI:302342988" /db_xref="GeneID:9494018" /translation="MNDKRLLVVDDEKNIRLTVTQALEDLGLPVRTAVNGEEAMTMLD EEPFDVVFLDLRMPGMDGMEALRRIRDGWPKTRVIVITAHGKIESAVQAMKLGALDFV QKPFSPAEVRELALRALEGGAEEANDAEDYFSLVHRVKNHIAAGDYPAARRAARRAMA ADPARPQAYNLLGALLEIKGEVLRAQKFYRAALDIDPAFEPAQANIRRTTSSNEFGGI DLGPDEGEARRPAMEKQNEK" misc_feature 1733887..1734201 /locus_tag="Deba_1555" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 1733890..1734204 /locus_tag="Deba_1555" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1733899..1733904,1734031..1734033,1734055..1734057, 1734115..1734117,1734172..1734174,1734181..1734186) /locus_tag="Deba_1555" /note="active site" /db_xref="CDD:29071" misc_feature 1734031..1734033 /locus_tag="Deba_1555" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1734040..1734045,1734049..1734057) /locus_tag="Deba_1555" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1734181..1734189 /locus_tag="Deba_1555" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature <1734376..>1734495 /locus_tag="Deba_1555" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" gene 1734578..1735018 /locus_tag="Deba_1556" /db_xref="GeneID:9494019" CDS 1734578..1735018 /locus_tag="Deba_1556" /note="COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR016040:IPR003148:IPR006036; KEGG: kol:Kole_0373 TrkA-N domain protein; PFAM: TrkA-N domain protein; SPTR: B4WH72 TrkA-N domain superfamily; PFAM: TrkA-N domain" /codon_start=1 /transl_table=11 /product="TrkA-N domain protein" /protein_id="YP_003807518.1" /db_xref="GI:302342989" /db_xref="GeneID:9494019" /translation="MKNDRYIIVVGCGRLGSLLANQLSRAGNSVVAIDKNEPTFGALS PEFSGFKIHGDASRMAVLKQAKLDRADVLIATTHADNVNLMVAQAAQVIFGVRRVLAR VFDPKREEVYARLGIETICPTSVAAELFLRALAGGEARRPGARA" misc_feature 1734596..1734937 /locus_tag="Deba_1556" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 1735015..1735677 /locus_tag="Deba_1557" /db_xref="GeneID:9494020" CDS 1735015..1735677 /locus_tag="Deba_1557" /note="COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR016040:IPR003148:IPR006037:IPR006036; KEGG: nth:Nther_0254 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: B4WH73 TrkA-N domain family; PFAM: TrkA-N domain; TrkA-C domain" /codon_start=1 /transl_table=11 /product="TrkA-N domain protein" /protein_id="YP_003807519.1" /db_xref="GI:302342990" /db_xref="GeneID:9494020" /translation="MKALIAGGGKALFFICRNLAARGCQIVVINGDSEECVQLARQLP ATVICGDASDAEILGEAGARQADVVLAITPNDQDNLVICQLAARTFGAPRTVALANDP DNVELFEKLGVTGFSITNIVGSLIEQRAALEQITNLLPLGDGRVNVTEIVIDERSPVA GKFLRDIVLPENALVAVVIRGERPIVPRGANDLLVGDRVVLITLPENHGPALRALVGQ QI" misc_feature 1735015..1735632 /locus_tag="Deba_1557" /note="K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]; Region: TrkA; COG0569" /db_xref="CDD:30915" misc_feature 1735024..1735356 /locus_tag="Deba_1557" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1735456..1735635 /locus_tag="Deba_1557" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene 1735691..1737208 /locus_tag="Deba_1558" /db_xref="GeneID:9494021" CDS 1735691..1737208 /locus_tag="Deba_1558" /note="COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: kol:Kole_0375 cation transporter; PFAM: cation transporter; SPTR: B4WH74 Cation transport protein; PFAM: Cation transport protein" /codon_start=1 /transl_table=11 /product="cation transporter" /protein_id="YP_003807520.1" /db_xref="GI:302342991" /db_xref="GeneID:9494021" /translation="MREKQYLLQRYAAIASSIGLILLLTGALMFTPLLVLPWRPEELG QAWAFVLPAVCQCSLGLVLWRAFGGRARDALTVQEGGVIVVLGWALVILFSAWPFTAV LGLPFSRAVFESVSGWTTTGLSVVDVTRAGWMILLWRSVIQLAGGAGLAIIMLSAIVG PVGAGVTSAEGRGDQLAPHVRRSARLVLVIYGCYAIAGTVAYWLVGMSFFDALNHSFA AVSTGGFSTRVESIGYWDSAVIEAVTIPLMILGNLSFVTAWLLWRGRLRLVALNGEAR LMAVLIPLCAAAVFLLTSRALYPTLEKSLRVALFETVTALTTTGFSTVGYGDWNAFGL MALIVLMIIGGGTCSTAGGVKQFRVYLLWRMLCWEIKRGLVPKSVVLERPLWEGEARV FVDDGRVRQAAVFVFLYLATYMLGVMVLCACGYDLSQALFEFASAMGTVGLSIGVTSA QMPDVALWAETLAMFLGRLELIVVVVSLLKLGVDGRKMLARRRGGRTRSLHWAAR" misc_feature 1735775..1737118 /locus_tag="Deba_1558" /note="Cation transport protein; Region: TrkH; cl10514" /db_xref="CDD:187005" misc_feature 1735970..1737094 /locus_tag="Deba_1558" /note="potassium uptake protein, TrkH family; Region: 2a38; TIGR00933" /db_xref="CDD:162118" gene 1737265..1738428 /locus_tag="Deba_1559" /db_xref="GeneID:9494022" CDS 1737265..1738428 /locus_tag="Deba_1559" /note="COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155; KEGG: dal:Dalk_4240 hypothetical protein; SPTR: B8FM84 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807521.1" /db_xref="GI:302342992" /db_xref="GeneID:9494022" /translation="MGLRGKYAIVGVGYTPQGRLPDRTTFSFHLEAVANAIADAGLKK DAIDGLIAYRHFPACPGEPDVTPQLIAQGLGLTPDYLCQDANCSRSHLQQAIGAIEAG FCNYVAISYGHSGLSGGGMNLLLEEMAGNEVVFGHFGAAGGYALAARRGMHEFSAGPE TWKHIAMGQRKWADRNPAAIMRGKPMTEADYYGAPMVVDPLRLFDCCLVNDGGRAIIV TTAERARDLKQPPVLILGLGQHNPSTEIGQSRYMAGPTGSKKAGEAALRMAGVGLADV DACQIYDCFSYTVELTLQDYGFFGRGEGKDWFQGGTIEPGGRLPINTSGGQLSEAYFM GLTPISEAVMQLMGRCEDRQLGPKTNTKTPEIIMCSDNGAILQSQSCFIFGRG" misc_feature 1737271..1738425 /locus_tag="Deba_1559" /note="thiolase; Provisional; Region: PRK06158" /db_xref="CDD:180434" misc_feature 1737292..1738413 /locus_tag="Deba_1559" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature order(1737523..1737525,1738108..1738110,1738258..1738260) /locus_tag="Deba_1559" /note="active site" /db_xref="CDD:29416" gene 1738431..1738841 /locus_tag="Deba_1560" /db_xref="GeneID:9494023" CDS 1738431..1738841 /locus_tag="Deba_1560" /note="COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: dal:Dalk_4239 protein of unknown function DUF35; PFAM: protein of unknown function DUF35; SPTR: B8FM83 Putative uncharacterized protein; PFAM: rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807522.1" /db_xref="GI:302342993" /db_xref="GeneID:9494023" /translation="MPTNRLLPTPDADSKPFWDGCREHKLLFQKCASCGHVRWPAGVI CPQCHGRDAQWIEARGQGVVYSYAIYHQAFHPAFKDNLPYVVAVVELAEGPMLLGNIV DCPQHDLRCDMAVQAAWDDVTAQCSLPKFRPLGP" misc_feature 1738482..1738586 /locus_tag="Deba_1560" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" misc_feature 1738593..1738790 /locus_tag="Deba_1560" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene complement(1738864..1739313) /locus_tag="Deba_1561" /db_xref="GeneID:9494024" CDS complement(1738864..1739313) /locus_tag="Deba_1561" /note="COGs: COG1671 conserved hypothetical protein; InterPro IPR003791; KEGG: azo:azo2224 YaiI/YqxD family protein; PFAM: protein of unknown function DUF188; SPTR: Q2BPA3 Putative uncharacterized protein; PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807523.1" /db_xref="GI:302342994" /db_xref="GeneID:9494024" /translation="MKIWIDADGCPKPAKELVFRASARLAVAVVMVADRPVFRPPSPL ITAVVVPRDMDSADKHIAQEISPGDLVVTADLPLAAAVVERGAVAINPRGETYTAENV RERLSMRDFLTGLREAGVQTGGPAPYGRKDKERFAAALDRHLGRMGR" misc_feature complement(1738876..1739265) /locus_tag="Deba_1561" /note="Uncharacterized BCR, YaiI/YqxD family COG1671; Region: DUF188; cl00727" /db_xref="CDD:186163" gene complement(1739356..1741014) /locus_tag="Deba_1562" /db_xref="GeneID:9494025" CDS complement(1739356..1741014) /locus_tag="Deba_1562" /note="COGs: COG0578 glycerol-3-phosphate dehydrogenase; InterPro IPR006076:IPR000447; KEGG: amr:AM1_2702 glycerol-3-phosphate dehydrogenase domain-containing protein; PFAM: FAD dependent oxidoreductase; SPTR: A0YYL2 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_003807524.1" /db_xref="GI:302342995" /db_xref="GeneID:9494025" /translation="MRRDLAQLTSREYDLIVVGAGVHGAWAAWDAVLRGLKVALVERG DFGGATSGNSLQMLDCWPSPPRLLDVASLRTSLAETATILRLAPHLAQPLPCLLPLRH GLKQFPPLLNAACRAHSLLRGGMDEPLPPKAKVIPAAELGRWAPEPLVRGARAGLLWH NGQLDDAQRLCLALADAAWRGGAAVANYVDVREVITRNGWAVGVRARDVIDDAELEIR GRAVLVAAGPWTRELTGQAPRQPQWALGCNVVLDRPIGRAAVALRSPFGRHKDPLRGG RLLFMAPWRGRTILGASYRLSLGAPQRPAVWADDFLTLLGLFNRACPELALQPQEVCS VRWGLLPLAQGGVAPLGGGLSTRPQVRAMAISGGPKRLFALSPVELTTARALAQRAVD LVLAHLGLRGRACRTARQPLWDEPAALTANPPSAIDQASLDRLAVDYGHNAAQVAALA ADDQALAQPLSADCPVLGCQVAFAARREMAARLADVILRRTEMGKFGPPPDEAVRRAA TIMARELGWGDKRLDDELTLARRAFFLTRQVRQAQGQPLKRFIG" misc_feature complement(1739413..1741011) /locus_tag="Deba_1562" /note="Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Region: GlpA; COG0578" /db_xref="CDD:30923" gene complement(1741142..1742329) /locus_tag="Deba_1563" /db_xref="GeneID:9494026" CDS complement(1741142..1742329) /locus_tag="Deba_1563" /note="COGs: COG2814 Arabinose efflux permease; InterPro IPR004812:IPR016196:IPR011701; KEGG: mac:MA1858 membrane transport protein; PFAM: major facilitator superfamily MFS_1; SPTR: Q8TPP8 Membrane transport protein; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily" /codon_start=1 /transl_table=11 /product="drug resistance transporter, Bcr/CflA subfamily" /protein_id="YP_003807525.1" /db_xref="GI:302342996" /db_xref="GeneID:9494026" /translation="MRKTIILLALLTAFPPMSTDMYLPALPLLGKLWGQPEAAINLTL VLWFVTYCVFLLVYGPVSDRVGRRPPLLWGVGLFIVASLGCAMADGLTMLLAARVAQA AGAAASTVMAMAMAKDLFEMRQRAKVLAYISVINALAPMLAPTLGGWIMAWLSWRWVF AAQALLAAAVLPQIARMNEPLQAPIKVKASHAVLAYARLFKNWRFSCLNAAMALPNLA MFAFIAASPAIYISGFGLSESVFGYFFGFNALAMMVGAYGYSFFGRGFSPLKIMLTSF VGMAVGGAGLVFLPHQQSPWMVALPMWVVSFCIGLNRPPANNLILEQVSADTGSASSL IALAIMSSGAVAMFVASLAWADKAAVIGALAMVGGATAFVALVAMRHSLAGLEPMSAR ATS" misc_feature complement(1741349..1742317) /locus_tag="Deba_1563" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(1741349..1742308) /locus_tag="Deba_1563" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature complement(order(1741367..1741369,1741376..1741381, 1741391..1741393,1741400..1741405,1741412..1741414, 1741562..1741564,1741574..1741576,1741583..1741585, 1741595..1741597,1741607..1741609,1741649..1741651, 1741658..1741663,1741670..1741675,1741682..1741684, 1741910..1741912,1741928..1741933,1741940..1741945, 1741979..1741981,1741988..1741993,1742000..1742005, 1742012..1742017,1742153..1742158,1742162..1742167, 1742177..1742179,1742186..1742191,1742198..1742200, 1742249..1742254,1742258..1742266,1742273..1742275)) /locus_tag="Deba_1563" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(1742707..1743024) /locus_tag="Deba_1564" /db_xref="GeneID:9494027" CDS complement(1742707..1743024) /locus_tag="Deba_1564" /note="KEGG: bte:BTH_I3269 phage-related secreted protein; SPTR: C9LRF1 Putative MoaD" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807526.1" /db_xref="GI:302342997" /db_xref="GeneID:9494027" /translation="MAVSCVAPSAYDAKLEKEVPDGTHVPGRPQGAGWAHSTSGTEIS LKDLLAGIKARGGKTYLQTGQNARKRGAVHFPPDGQAVIQILKYGDASTLIHELGLLH GET" gene complement(1743184..1743675) /locus_tag="Deba_1565" /db_xref="GeneID:9494028" CDS complement(1743184..1743675) /locus_tag="Deba_1565" /note="KEGG: hypothetical protein; SPTR: A8TMU2 Sensor protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807527.1" /db_xref="GI:302342998" /db_xref="GeneID:9494028" /translation="MKLRVVFVSLAIALFVGAVACARALAEGPSQITFNIVGPTDGSV QNLRWGNMVSPDGSCQFWDNGPAGNPTYVWNNMGNNLTKFALELNYDMEQSGTWVAAT VHGIVIVDPTAMPDGSVSVTAELQKCSMGPNNIVLGLKGVKGPSGVSMGNCAAVPPCE KWQ" gene complement(1744224..1744787) /locus_tag="Deba_1566" /db_xref="GeneID:9494029" CDS complement(1744224..1744787) /locus_tag="Deba_1566" /note="KEGG: rpb:RPB_3423 hypothetical protein; SPTR: C4GKM1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807528.1" /db_xref="GI:302342999" /db_xref="GeneID:9494029" /translation="MLLNLCPRPGRDFGPGWVMFSTRRGLLAGPIAAITAAGRYFAGR LVATHCGLVLDHQHVAEALASGFGVSPLGPLFIDRDVMIWFRRPAGLTPAAAQAMVDQ ARAWAASGVAYDFVGCAAEPLALDLDSPRALFCSEAVATLLRLAAPHLTRPLPVDLAT RPPEKWNPHELDSLDGLWGESEEEEKK" gene complement(1744788..1745342) /locus_tag="Deba_1567" /db_xref="GeneID:9494030" CDS complement(1744788..1745342) /locus_tag="Deba_1567" /note="KEGG: ecw:EcE24377A_C0002 TraT complement resistance protein; SPTR: A7ZGS1 TraT complement resistance protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807529.1" /db_xref="GI:302343000" /db_xref="GeneID:9494030" /translation="MARLKTLALLLTLTLAAGGCATTSTITRTYTDEQGRQVTETQEI TDEYAYMQAQKDARKPTLEIIAADNDQPMVFNNVKALRVYSGDANGIKQYVHPGWNVL SQYGGVAGAILGAGVSGYFANELAATVGAAAGTRYVSSFNASGDQSLAGYGPGDGSIL RLDPTTTTTTDRHDVTTTAEPEAQ" gene complement(1745342..1745476) /locus_tag="Deba_1568" /db_xref="GeneID:9494031" CDS complement(1745342..1745476) /locus_tag="Deba_1568" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807530.1" /db_xref="GI:302343001" /db_xref="GeneID:9494031" /translation="MNWIKKHKKIIAAIGAGLAAGAAALGYACPEPLADLWAWLLGVL " gene complement(1745473..1746024) /locus_tag="Deba_1569" /db_xref="GeneID:9494032" CDS complement(1745473..1746024) /locus_tag="Deba_1569" /note="COGs: COG3926 Putative secretion activating protein; InterPro IPR008565:IPR018537; KEGG: pde:Pden_4087 hypothetical protein; PFAM: peptidoglycan binding domain; protein of unknown function DUF847; SPTR: A1B9F9 Putative uncharacterized protein; PFAM: Predicted peptidoglycan domain; Predicted lysozyme (DUF847)" /codon_start=1 /transl_table=11 /product="peptidoglycan binding domain protein" /protein_id="YP_003807531.1" /db_xref="GI:302343002" /db_xref="GeneID:9494032" /translation="MRLDPRLQPFAAQYPPAFLAAMGFTLEHEGWDATSDHPADAGGA TRYGIARAHHPEAWRDGPPTLARALELYHREYWRAIGGDELSPPLAVTLMDAAVLFGP DRPARWLQEALGVATDGVIGPRSIAAAKAHANPHGLAGALIWRRMEAHAQRVAAKPDQ AVFLLGWTRRCAALCQFISKERP" misc_feature complement(1745731..1745964) /locus_tag="Deba_1569" /note="Predicted lysozyme (DUF847); Region: DUF847; pfam05838" /db_xref="CDD:147798" misc_feature complement(1745515..1745715) /locus_tag="Deba_1569" /note="Predicted Peptidoglycan domain; Region: PG_binding_3; pfam09374" /db_xref="CDD:117916" gene complement(1746027..1746605) /locus_tag="Deba_1570" /db_xref="GeneID:9494033" CDS complement(1746027..1746605) /locus_tag="Deba_1570" /note="KEGG: dde:Dde_3394 hypothetical protein; SPTR: Q30VV8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807532.1" /db_xref="GI:302343003" /db_xref="GeneID:9494033" /translation="MIYHIDDSGRIVAVLAGQTAEQEAEALAAGLRVIEATGQYDREA HVYVDGAFAAIPAPSAAEQLATAVADGLRGLAAHFQHLVDQIEPASRYPQFERDSQDA QVLWAKTYETDATAAAMLAALAAPTGQGVAELAARILANKQQWDAMRARLIGLMRPLR AAISAAQTPDDVAAVLAALPTAAQLQAAMAGQ" gene complement(1746616..1747845) /locus_tag="Deba_1571" /db_xref="GeneID:9494034" CDS complement(1746616..1747845) /locus_tag="Deba_1571" /note="KEGG: mca:MCA2902 hypothetical protein; SPTR: Q603A5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807533.1" /db_xref="GI:302343004" /db_xref="GeneID:9494034" /translation="MRKLERYAFRDGVTPLSAEELNARFFDLDLRCHALEGLGVSWED AVRQVQQVGLERINGLILPTLDQAGAMIDDTRRQWEHINQSWSDMVDTVDGAGQRLDA TEAGLNAVGAALTQAGARIDVAEAGLDAVDAALTRAGARIDAADAALDAVGVALTQAG TRIDVAQAAADQALATLGRLGGYISGLQLRRHSDTQVLVRRGALEIGGRLYTLPNDTY VNAPTGSGFGWRYLAVRPPASGDTLTAPYCFGTFDPGLRPVHWAPGWVITENGHRVIG LYPGVGNAVVVFRTMGGRYVLPFHQTIIDTAAPPTASTEMAVGLPPFPDYLNADYVAT IRNPGGPGVALVIGGQTAIEDSCGGATSRVASGGVSIRTTSGTAFIRLHGAGGAGTPN LLRLNMAAMDVPYGMAR" gene complement(1747853..1750204) /locus_tag="Deba_1572" /db_xref="GeneID:9494035" CDS complement(1747853..1750204) /locus_tag="Deba_1572" /note="InterPro IPR018087; KEGG: mca:MCA2904 hypothetical protein; SPTR: Q603A3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807534.1" /db_xref="GI:302343005" /db_xref="GeneID:9494035" /translation="MERKVIFRDRQEARADDPNNIQLFVDESLQSIITQAITPERMFH GGNVSQYSATELRIAPIHLWVGDQGRVYRHAETQTLSVFSHLPLQDKRWLVISVMGQE QDTDLQPRDFKIDLQTGQLEPRAVAMERVREVVVEVKAGLESPDPQVPLPSTGYTAIA NVLLGSAGIIQVVPSETARLVRLFEAWRKIASLEEWKTRIEGLLDSLASDLAELYRRL PGLANHRMLMEVAMDVAELKERLDVPDDYSSYGADHFLTKDESDAADTEYHARVEEGV RFPWRNASEGRLTLFNPYEQAVKVHAAGSGAGLVLPAYGEVGGSNKAAGYAGSIAVGQ YEFTTNVFKQGAHTRTIKRYGPTRDVCTNSEWWKSGEFDPFTGIFQKDGETWEVSPYE TNFHGIANPNGATYLRNAGLRVRQVWVDTINEPYWYVDPETHTIDGAQIAQTLLMGRN GWLTGVNLFFDDVAADGRVHLHFCETVNGVPDPSRAIGYTYLDAAALKKYPEATRFTF PSPLYVETGKRYAIILTTLGAHKVVTISGTAYTAGTLFVSTDGAFFDGNLEKDLMFGL RYASFKQNRTVVDLSPVNLDGGIADIELWTEGVEPASCEFYLEFQRDGDPTWYPMVLD HAGKLKNLPAMLKLRGVFVGTADIAPGVNFGTSILRVQRPDTSFKHFSSERLLEAASG DITVTLRLEGWNYDDHDCRVHLEVDGARIDPVAPDPARPDIGYSQKELDADGEGDEKR YAIERAFTFAPDPAIDRYKIVITGSAASPIDVFHVAKRVDVAR" gene complement(1750204..1751538) /locus_tag="Deba_1573" /db_xref="GeneID:9494036" CDS complement(1750204..1751538) /locus_tag="Deba_1573" /note="KEGG: mca:MCA2905 prophage MuMc02 tail fiber domain-containing protein; SPTR: Q603A2 Prophage MuMc02, tail fiber domain protein; PFAM: Phage tail protein (Tail_P2_I)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807535.1" /db_xref="GI:302343006" /db_xref="GeneID:9494036" /translation="MAELMTALARLLPPSIAQDQTMAAVATVAGAEEERLRALTDRAL IWARLDELPDAVLEHLGWGLHIDGWEHAATRELKIWLIRHFYDWHAHKGTAHGLALYW RVLLGRAMLGASPPGKSIWGVNISAQERAAREAPHPEIRVYPFRHGGVNRQSFFWGQT LGGPGEGCFLATGEAILRIGDMVELFDPLTGQAQALNVLAVSGEQAWRAASQRVEARL PATAAGLCWGEAMEGQWVDHGANGRLFTLDLERPYQDEIERRQTLSITPGPRPMRTNY EAVAEAGQAGAETCWGNRWTDAYQGVGGGNNFWGADIYFAPSEPHLRLYKRLKLFEPG RARALTRADAVYWGAFRVGSAPAHHADVAVDCQGQARPRAWFWGDAHWGQDLWDVSDA AVRIAQVRGVGRLAARLSDKVELVVTNRRIVRASAGLLAGSVVAGEYRLEVI" misc_feature complement(<1751254..>1751391) /locus_tag="Deba_1573" /note="Phage tail protein (Tail_P2_I); Region: Tail_P2_I; cl01817" /db_xref="CDD:163999" gene complement(1751543..1752673) /locus_tag="Deba_1574" /db_xref="GeneID:9494037" CDS complement(1751543..1752673) /locus_tag="Deba_1574" /note="COGs: COG3948 Phage-related baseplate assembly protein; InterPro IPR006949:IPR014507; KEGG: drm:Dred_1220 baseplate J family protein; PFAM: Baseplate J family protein; SPTR: B6WRR4 Putative uncharacterized protein; PFAM: Baseplate J-like protein" /codon_start=1 /transl_table=11 /product="Baseplate J family protein" /protein_id="YP_003807536.1" /db_xref="GI:302343007" /db_xref="GeneID:9494037" /translation="MTLVLENLPPVSFCPTETAAVEAALIADFEAITGRSLYPGDPQR LFVEAVAYLIGQQRFLIDYAGKMNLISHAEGAYLDHLAALLNTSRLGGQAATTTLRYS LARPLDFDVVIPAGSRASHDGALLWATTAEATIAAGALDADAPAQCQTAGAQGSGLAP GQINRFFDRVTYVSSVANTTTTMGGGDGEGDARLRARVQLAPERLSACGPAGAYRYWA LSASPLIADVAVWSPAPGQVNLAPWCAGGVAPSAELLALVHAAVSDQARRPLTDLVQV LAPEVVEFQVAGRYWLRASHGARAGQVQAAVATAVVDYLAWQRAKLGRDISPDELINR VRAIGGVQRVELAAPVYRALDPWQAALGRADGGLAYGGLADE" misc_feature complement(1751675..1752100) /locus_tag="Deba_1574" /note="Baseplate J-like protein; Region: Baseplate_J; cl01294" /db_xref="CDD:174609" gene complement(1752670..1752999) /locus_tag="Deba_1575" /db_xref="GeneID:9494038" CDS complement(1752670..1752999) /locus_tag="Deba_1575" /note="InterPro IPR007048; KEGG: drm:Dred_1219 gpW/GP25 family protein; PFAM: GPW/gp25 family protein; SPTR: C2BG15 GPW/gp25 family protein; PFAM: Gene 25-like lysozyme" /codon_start=1 /transl_table=11 /product="GPW/gp25 family protein" /protein_id="YP_003807537.1" /db_xref="GI:302343008" /db_xref="GeneID:9494038" /translation="MARLLVQGQAAAVDFAPNDLAAEVSQNVRMIMATPKGSVPLDRD FGLDFSLLDQPLPRARALLAAEIVRQVARYEPRARVARVDWAESELEAMDGGLRPIVV IDLLEDR" misc_feature complement(<1752751..1752930) /locus_tag="Deba_1575" /note="Gene 25-like lysozyme; Region: GPW_gp25; cl01403" /db_xref="CDD:194124" gene complement(1752999..1753391) /locus_tag="Deba_1576" /db_xref="GeneID:9494039" CDS complement(1752999..1753391) /locus_tag="Deba_1576" /note="KEGG: cvi:CV_0414 hypothetical protein; SPTR: Q7P101 Putative uncharacterized protein; PFAM: Phage P2 GpU" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807538.1" /db_xref="GI:302343009" /db_xref="GeneID:9494039" /translation="MTSGRIGSFGPVVFEASLGYVKTFERLSERRRARFATHDVLSGD QKLQFITLELAEADLEMTFHHAFCTPDDELEALRGVLAGHQAHELVIGGKNFGQFVLE ELSQVIDQADNHGRTRLAQASLRLREYR" misc_feature complement(1753005..1753364) /locus_tag="Deba_1576" /note="Phage P2 GpU; Region: Phage_P2_GpU; cl01391" /db_xref="CDD:154376" gene complement(1753384..1753929) /locus_tag="Deba_1577" /db_xref="GeneID:9494040" CDS complement(1753384..1753929) /locus_tag="Deba_1577" /note="COGs: COG4540 Phage P2 baseplate assembly protein gpV; InterPro IPR013046:IPR006531; KEGG: drm:Dred_1217 phage baseplate assembly protein V; PFAM: baseplate assembly protein V; SPTR: B6WRR1 Putative uncharacterized protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Phage-related baseplate assembly protein; TIGRFAM: phage baseplate assembly protein V" /codon_start=1 /transl_table=11 /product="phage baseplate assembly protein V" /protein_id="YP_003807539.1" /db_xref="GI:302343010" /db_xref="GeneID:9494040" /translation="MAGPFEEIGRRLTALESALRQLVRVGFVVEQIPAEGKVRVEFRD ADMIETFKFGVLTPQTRCNKDWWLPDLGEQVLCLCLPYGLERGFIVGSFFSQADPPPL TDPDKRHLRFLDGGWLEYDRATGEAQVHAPRTIRLAAGEAVIIDAPILKCPIPAPNLG QPELRPVEPSPIPAPEEWPHD" misc_feature complement(<1753486..1753887) /locus_tag="Deba_1577" /note="Phage-related baseplate assembly protein; Region: Phage_base_V; cl11432" /db_xref="CDD:164221" gene complement(1753929..1754945) /locus_tag="Deba_1578" /db_xref="GeneID:9494041" CDS complement(1753929..1754945) /locus_tag="Deba_1578" /note="COGs: COG3500 Phage protein D; InterPro IPR010277; KEGG: drm:Dred_1216 phage late control D family protein; PFAM: late control D family protein; SPTR: B6WRQ9 Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD)" /codon_start=1 /transl_table=11 /product="late control D family protein" /protein_id="YP_003807540.1" /db_xref="GI:302343011" /db_xref="GeneID:9494041" /translation="MAATLEPRRARLELIYRGVDIAEHCESAEYVDFAEGQVDELRCT LEDRELRWQGPWFPGKGEEVRAYIRCFDWDGPGDAPRLDCGLMEIGEVTLSGPPDMVE ITAASARVKSTARVQKKTKAWEDKALSHIAAHVAEKCGLGLHWEGLDHHFERVDQREE SDLGFLTRLAREHGNSVKTAHEKLIVYAGHKYDQRGPHATLTRGHSDIIGYRFATTSH DLYKGAVVSYWRPELKEHIVGEFWPDPAPASQDVLRVNQPVKDAAEAAKLAQTSLRRK NKVEVTAEITLKGAPFRRATEVVRMSGFGRFDGRYFVAEARHGLSGGGVYQTTLSLRQ VIAY" misc_feature complement(1753947..1754909) /locus_tag="Deba_1578" /note="Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954" /db_xref="CDD:147871" misc_feature complement(1753950..1754888) /locus_tag="Deba_1578" /note="Phage protein D [General function prediction only]; Region: COG3500; cl12180" /db_xref="CDD:175410" gene complement(1754930..1755139) /locus_tag="Deba_1579" /db_xref="GeneID:9494042" CDS complement(1754930..1755139) /locus_tag="Deba_1579" /note="KEGG: bcj:BCAS0511 phage tail protein gpX; SPTR: B4ENQ7 Putative phage tail protein gpX; PFAM: Phage Tail Protein X" /codon_start=1 /transl_table=11 /product="phage tail protein gpX" /protein_id="YP_003807541.1" /db_xref="GI:302343012" /db_xref="GeneID:9494042" /translation="MSARRHITSQGQTWDQIAHAIWGREDMTHHLLAANPSHRRTVIF AAGVELIVPALTPPASEEPPPWQQR" gene complement(1755126..1758107) /locus_tag="Deba_1580" /db_xref="GeneID:9494043" CDS complement(1755126..1758107) /locus_tag="Deba_1580" /note="COGs: COG5283 Phage-related tail protein; InterPro IPR010090; KEGG: rce:RC1_1127 phage tail tape measure protein, TP901 family, core region; PFAM: tail tape measure protein TP901 core region; SPTR: C6NTT0 Phage tail length tape-measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region" /codon_start=1 /transl_table=11 /product="phage tail tape measure protein, TP901 family" /protein_id="YP_003807542.1" /db_xref="GI:302343013" /db_xref="GeneID:9494043" /translation="MDKTLLFRFALHGQAQAAAAFGGLAQEAQRLRGQVEQADRAAGR VGGQQRLRAMLGGLRLSAAGAGQAALTAGRDFAASARQLGQNAIAATRAAKATRQLAR EQAAAANQAQRLSQKERALQQVQAARAQRQAAMGGLGGVAGGLLGGVAAGAAVAAPVV KAIGFESAMADVKKVMDFSAPDGLEKLGQDLLRLSAVKIPLSGEQLAAIAAAGGQLGV KEKDILAFVQTTSKMAVAWDMSAEAAGEASAKLSNVWDIPIERVEALGDAINHLSDNT AAKAPEMINVLTRVGGMGKQFGLSAVQTAALGNAFLALGRPPEVAATGINTLLNKLQT ADKQGEKFQQGLAAIGLDAQGLKDAIQNDAQGALLGFLEAVEGLDPSERAMVLMDMFG LEYADDLAILVGGLDKYKQALKLTGKQADYLGSMTREVENRSATTANQLQLLGNKLSR LAINAGTVLLPVIGALVGAAGWVLDLLADFQEAFPIVSGAISGVVVGGLALVTAWKLG AAVGGYLVGGVKEMVATLRLLRSSQLAARLATRLQTLALARQKAVSMALAAKQWLIVA VSKAWAVAQGLVNAAMWANPITWVVAGVVALAAGAYLLIKYWDQVAEFFGWLWGWIKA GAAAVWDWLKATALAPVEGIKSAWSTVSGFFGGLWRGLEAGASAAWGLVKATVLAPVE WIKSAWSTVSGFFGGLWRGLETGASAAWGMVKATALAPVEGIKSAWSAVSGFFGGLWR GLETGASAAWGLVKATVLAPIDWIKSAWSTVSGFFGGLWDGVKAGAAVATAGIRAAFA SALDWLRGTSLYQAGAKLIGTFVEGIKASVGQPIEAVKALLAQVRQYLPFSDAKRGPL STLTLSGQAFAGTFAAGIGQGAGQLIQAVAGLAQSAWSGLQGAAGAAAEFLGLGGPSG GLAKAQGELNAARGQAQGPAAAAPAQITIHQTINASGADKAGLKTALDQANAELTRLI ERTVNEMWARNQRTSMGNVGA" misc_feature complement(1756653..1757636) /locus_tag="Deba_1580" /note="phage tail tape measure protein, TP901 family, core region; Region: tape_meas_TP901; TIGR01760" /db_xref="CDD:188165" misc_feature complement(<1755846..>1756226) /locus_tag="Deba_1580" /note="membrane protein P6; Region: PHA01399" /db_xref="CDD:133949" gene complement(1758112..1758249) /locus_tag="Deba_1581" /db_xref="GeneID:9494044" CDS complement(1758112..1758249) /locus_tag="Deba_1581" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807543.1" /db_xref="GI:302343014" /db_xref="GeneID:9494044" /translation="MSAALELAQAGFGGAAGWLERPAAELEGWLRAAAKVIKRHNKAR R" gene complement(1758273..1758554) /locus_tag="Deba_1582" /db_xref="GeneID:9494045" CDS complement(1758273..1758554) /locus_tag="Deba_1582" /note="KEGG: drm:Dred_1214 hypothetical protein; SPTR: C3WMU0 Predicted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807544.1" /db_xref="GI:302343015" /db_xref="GeneID:9494045" /translation="MSKIKLSKAINWDGKEHSELTLELEALTGADLVAAEREFGARNP GFVGVPSLQVGYQAGVAAKALKRPVEDVLRLSAKDFLRCVEAVGGFLNA" gene complement(1758564..1759091) /locus_tag="Deba_1583" /db_xref="GeneID:9494046" CDS complement(1758564..1759091) /locus_tag="Deba_1583" /note="COGs: COG3498 Phage tail tube protein FII; InterPro IPR006498; KEGG: spe:Spro_4913 major tail tube protein; PFAM: major tail tube protein; SPTR: A8GLL5 Major tail tube protein; PFAM: Phage tail tube protein FII; TIGRFAM: phage contractile tail tube protein, P2 family" /codon_start=1 /transl_table=11 /product="major tail tube protein" /protein_id="YP_003807545.1" /db_xref="GI:302343016" /db_xref="GeneID:9494046" /translation="MADVNKIPQTLIGFAVYGDSDEMIGVADVELPDLEATTVEIKGA GIAGAADMPIMGHYGGMGLTINWRAITGNHIALSAPKAHDLTIRGSIQHYDAGTGEHA TAPLKVVVKAAPKKTGLGKLDTGEQMDASAEFEVLYIKITLDDDEVLEIDKFNYICKI GDTDYLESVRADLGK" misc_feature complement(1758570..1759073) /locus_tag="Deba_1583" /note="Phage tail tube protein FII; Region: Phage_tube; cl01390" /db_xref="CDD:174624" gene complement(1759104..1760555) /locus_tag="Deba_1584" /db_xref="GeneID:9494047" CDS complement(1759104..1760555) /locus_tag="Deba_1584" /note="COGs: COG3497 Phage tail sheath protein FI; KEGG: drm:Dred_1212 hypothetical protein; SPTR: A4J3U3 Putative uncharacterized protein; PFAM: Phage tail sheath protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807546.1" /db_xref="GI:302343017" /db_xref="GeneID:9494047" /translation="MSAYRHGVYVSQLPTSIIPPRRVDCAIPVVVGAAPAHMIEEGQT GPVNQPVLAHSHAEAVTALGYSDDWAAYGLCEFVYSQFVLHAAGPVILINVFDPARHK TAVTAEAVSFSGGRATLAHAGLVAAPVVKSADGQTTHAAGADYHVDPIAGVIRLSEGS AIAAGATVAVDYVYGDPSKLTADDVIGGIDAATGAASGLELVDQIFPRFGLLPGLIVA PGWSRHPLVAAVMAAKAANVNGHFRAMAVVDVDSGPDGAAKYADVAAWKAQNNYADSN MIVCWPKVALAGKEFWLSTQVAGRIAATDADNGGVPFESPSNKALEINGAVAAGQAVW LGPAEANYLNSQGVVTALNWNGSWRLWGNRTGCYPANTDVKDAFIGVQRMFCWLGNEF VLTFWQKVDRPITRRLVETIVDSYNIRLNGLAAREAILGGRVEFLRAENPASELMDGA ITFHLYVTPPSPAREINGLIEYDPGYLAVLFGN" misc_feature complement(1759167..1760072) /locus_tag="Deba_1584" /note="Phage tail sheath protein; Region: Phage_sheath_1; cl01389" /db_xref="CDD:194121" gene complement(1760552..1760860) /locus_tag="Deba_1585" /db_xref="GeneID:9494048" CDS complement(1760552..1760860) /locus_tag="Deba_1585" /note="KEGG: hypothetical protein; SPTR: B9Q803 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807547.1" /db_xref="GI:302343018" /db_xref="GeneID:9494048" /translation="MARSTDKSEAPATPAVAAPAASLKPAAAPSAVIYLGPNQPGGGL LHGQVFRGGLPPAAAGVDPALIVALADLPRAKLELADPSSGLSKIYRAAVKAGQGGRP " gene complement(1760844..1761341) /locus_tag="Deba_1586" /db_xref="GeneID:9494049" CDS complement(1760844..1761341) /locus_tag="Deba_1586" /note="KEGG: rfr:Rfer_2949 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; SPTR: Q21U93 Imidazole glycerol phosphate synthase subunit hisH" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807548.1" /db_xref="GI:302343019" /db_xref="GeneID:9494049" /translation="MTIYPTIVEVESALLAHLGADRVLADWGVEPRAIPGFEAKDFGR LFARYPAVGSYISGGKYEPDQLTVLETAPLYLICAGENLRGPAAARRGDERNPGAAHL VERCRALATAWRPGGNAASLTATGWRQVWANNQISVCALELAVCLTRPRARDKEALEH HGSIY" misc_feature complement(<1761015..1761323) /locus_tag="Deba_1586" /note="Domain of unknown function (DUF1834); Region: DUF1834; cl02087" /db_xref="CDD:154735" gene complement(1761338..1761784) /locus_tag="Deba_1587" /db_xref="GeneID:9494050" CDS complement(1761338..1761784) /locus_tag="Deba_1587" /note="COGs: COG5005 Mu-like prophage protein gpG; InterPro IPR006522; KEGG: dvu:DVU1114 virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; SPTR: Q72D17 Virion morphogenesis protein; TIGRFAM: phage virion morphogenesis protein; PFAM: Phage virion morphogenesis family; TIGRFAM: phage virion morphogenesis ( tail completion) protein" /codon_start=1 /transl_table=11 /product="phage virion morphogenesis protein" /protein_id="YP_003807549.1" /db_xref="GI:302343020" /db_xref="GeneID:9494050" /translation="MAGARIELQSAALERALLALRAALKDVAPLLAEVGQIVVGQALD SFEDEAGPDGAPWEPSQRAVLHGGQTLADSGLLRASLQDEVELMPDAVIVGSSRVYAA IHQFGGRAGRGHAVTLPARPFLPDEKTVAMAEIEAAITRHFAKAGL" misc_feature complement(1761353..1761712) /locus_tag="Deba_1587" /note="Phage virion morphogenesis family; Region: Phage_tail_S; cl02089" /db_xref="CDD:154737" gene complement(1761784..1762209) /locus_tag="Deba_1588" /db_xref="GeneID:9494051" CDS complement(1761784..1762209) /locus_tag="Deba_1588" /note="COGs: COG4387 Mu-like prophage protein gp36; InterPro IPR009752; KEGG: sfu:Sfum_1884 hypothetical protein; PFAM: protein of unknown function DUF1320; SPTR: A0LJG7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1320)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807550.1" /db_xref="GI:302343021" /db_xref="GeneID:9494051" /translation="MYCTPADLEKLLAPETLGQLADDGPDGPAPETVLLEAIEQADRE IDAYLGVARAVPLEPAPAIVANLSAKIAVYNLYRRRPHLEAGEWAGEYQRALKLLERI AEGRLSLGGGEGPAGPLEPHAMAVISRPPHFGDRRLRRF" misc_feature complement(<1761904..1762206) /locus_tag="Deba_1588" /note="Protein of unknown function (DUF1320); Region: DUF1320; cl01818" /db_xref="CDD:194195" gene complement(1762314..1763327) /locus_tag="Deba_1589" /db_xref="GeneID:9494052" CDS complement(1762314..1763327) /locus_tag="Deba_1589" /note="KEGG: dde:Dde_3377 hypothetical protein; SPTR: Q30VX5 Putative uncharacterized protein; PFAM: Phage major capsid protein E" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807551.1" /db_xref="GI:302343022" /db_xref="GeneID:9494052" /translation="MPMVVDLKPYFTRARIAKRFEAMPPLKSTIMDRYFPEAVRDQYE MPIIPLQVITAIVNAVPVVARGAESVSIDGRGFSNQWVEPLPVRIHTEVGAKDLNDLK LIGEDSREAWATRRQEAMRQTVRLTTEALCCQALLNGAVNYPLLQSNGQFINYKVEYN NEVIQTISVAAGSKWNAAECTMVKVFELLEEMADALDGAGYGGDKDVLAGKNAFSALL ALIEDAGDNQRPKVPTRINEDGSVNIGGHKIAKMAEVWRNPQSGASVAKVPAGEIRMI AKGYTGLIYAAVDDLDANLQALPMFVKPVERKNPSGYQLVAESKPLPAVAPKAVARAI VTA" misc_feature complement(1762368..1763297) /locus_tag="Deba_1589" /note="Phage major capsid protein E; Region: Phage_cap_E; pfam03864" /db_xref="CDD:146477" gene complement(1763356..1763709) /locus_tag="Deba_1590" /db_xref="GeneID:9494053" CDS complement(1763356..1763709) /locus_tag="Deba_1590" /note="KEGG: dde:Dde_3376 hypothetical protein; SPTR: Q30VX6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807552.1" /db_xref="GI:302343023" /db_xref="GeneID:9494053" /translation="MSDHNATIYQNSGFEREIKGGRGPWIERTYAKGATAIAAGLVCA IGAADGLAAPYDPANADLDQVKGVALADSAAEAASVNLLVLGTVNRGALKVGAAAPTT AQLLALEDRHIYAVG" gene complement(1763722..1764597) /locus_tag="Deba_1591" /db_xref="GeneID:9494054" CDS complement(1763722..1764597) /locus_tag="Deba_1591" /note="KEGG: dde:Dde_3375 hypothetical protein; SPTR: Q30VX7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807553.1" /db_xref="GI:302343024" /db_xref="GeneID:9494054" /translation="MSVWTAIFRAGTHTDSAGQTRAWTIADLDRAVASYDPARHAAPL VIGHPRADAPAWGWVGQLRREGDRLLARLDDVPEELKQAVAAGRYRHKSAAFYGDGGL RHVGLLGAAPPAVKGLGPVEFGGDDDWQEWAFGEGAEQTTEETMNELEEMKARLAQLE AKAQAAESKAAQAEAAAAQAEKDRRAAEAAHAEAQQKQAAKDREARFNELVAGGKCLP GEKDAALAIAAALEAGVELCFAEGGAVVRRPAEEAFWSLLASRPGSGLLGEFAQAPGS TESQAAPRADFAAKF" gene 1764746..1765063 /locus_tag="Deba_1592" /db_xref="GeneID:9494055" CDS 1764746..1765063 /locus_tag="Deba_1592" /note="KEGG: dde:Dde_3369 hypothetical protein; SPTR: Q30VY3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807554.1" /db_xref="GI:302343025" /db_xref="GeneID:9494055" /translation="MEKQVLELAVEALKYAAQVVQYLAAPAVGWALWYVRGIRRDQAD FGQRLVRLEFDHAGLKKCVDDRPSGVAIKELAGDIKAVREIVERVERMVNRHEDHLLG GGR" gene 1765063..1765374 /locus_tag="Deba_1593" /db_xref="GeneID:9494056" CDS 1765063..1765374 /locus_tag="Deba_1593" /note="KEGG: dde:Dde_3370 hypothetical protein; SPTR: Q30VY2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807555.1" /db_xref="GI:302343026" /db_xref="GeneID:9494056" /translation="MPGYDQLIAEHLRLTILRCLDDQPDYALNESLLLDLVERFGFAP SQDRLATQLAWLAEQGLIGLGGPAQCRVATLTRRGQDVAKGRAHAPGVKRPRPGETAW A" gene 1765365..1765964 /locus_tag="Deba_1594" /db_xref="GeneID:9494057" CDS 1765365..1765964 /locus_tag="Deba_1594" /note="KEGG: dde:Dde_3371 hypothetical protein; SPTR: Q30VY1 Putative uncharacterized protein; PFAM: Transposase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807556.1" /db_xref="GI:302343027" /db_xref="GeneID:9494057" /translation="MGVIELDGREYPPEAVWRAQELYCVARLTYAQVAEELGVAVSTL KRWGAQYGWPAKRAELARAMADIRADTVLARSAMLKELIEERNPAVGFAVAKLEELAL KQAQAQREGKAAPEATAAPRRAINNAAEAAAALKEAIELKLARLLSSPEEVDLKAVKA IKDAMELIGQMEPKTKGEAQGKGLSPESIQRIQREILGL" gene 1765965..1767296 /locus_tag="Deba_1595" /db_xref="GeneID:9494058" CDS 1765965..1767296 /locus_tag="Deba_1595" /note="COGs: COG4373 Mu-like prophage FluMu protein gp28; InterPro IPR004921; KEGG: dra:DR_A0094 hypothetical protein; PFAM: protein of unknown function DUF264; SPTR: Q9RZ60 Putative uncharacterized protein; PFAM: Terminase-like family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807557.1" /db_xref="GI:302343028" /db_xref="GeneID:9494058" /translation="MGYFLPYQQKWLADDSRLKIAEKSRRIGFTYVQAYEDVRDACRA DGALDVWFSSADESAAKEYIRYCGQWARLLNVAAQDLGEVALDGDGDVKALVIEFASG KRIHGLSSNPAAFRSKGGKLVLDEFAFHQDPEALWKAAAPIITWGYPARVISTYNGKG NRYARMVADARRGNKWALHTVTIEDAVAQGLVDRVMGRPATPEEVAAFLADCRDIAGD EETYQQEYMCQPVDEATAWLTWELIAKAQHPDAGRPELYAGGPAFVGMDIGRRRDLSV IWVVEQVGDVFWTREVISLKNASFARQDAALDGVLARYKVARACLDQTGIGEKPVEDA KTRHGGHLVEGVIFTAQAKQALATTGKQLFEDGRLRIPEARAIRDSHHAVRKIATAAG NPRFDADRSEAGHADEFWAHMLALHAAADPAEPWQTATVARDYLQRLTKGY" misc_feature 1765968..1767221 /locus_tag="Deba_1595" /note="Mu-like prophage FluMu protein gp28 [General function prediction only]; Region: COG4373" /db_xref="CDD:34082" misc_feature 1766022..1767221 /locus_tag="Deba_1595" /note="Terminase-like family; Region: Terminase_6; pfam03237" /db_xref="CDD:146059" gene 1767298..1768815 /locus_tag="Deba_1596" /db_xref="GeneID:9494059" CDS 1767298..1768815 /locus_tag="Deba_1596" /note="COGs: COG4383 Mu-like prophage protein gp29; InterPro IPR009279; KEGG: dde:Dde_3373 hypothetical protein; PFAM: protein of unknown function DUF935; SPTR: Q30VX9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF935)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807558.1" /db_xref="GI:302343029" /db_xref="GeneID:9494059" /translation="MPGIWAPNGDWIEFAQVDHRSLTAEMATAAAVGEDLGSMLAYLP DPDPVLRKRGDDAKILEDLTADDQVMTAIQNRKLRVLCRRDYDFRPGVLPGKEATPQA TALCEALTKDLETIGLRDVFAEILDAPFYGHTICELIWAADGGRMRLKNIIPKPRQWF AWDKDRRPCLRSKTGLDLKPLPWGKFIVVRHFPTYQNPYGLRLLSRCLWPVAFKRGGV KFYTRFLDKYGQPWVLGRAPRGANLDAKRAMAGDLAAMVQDAVAVIPADAAVDLVESK GRAGDQFEAYLKRWDKAIFKVIMGQTLTSEMDGQGSRAASETHYGVAEDMAEADQYII ESAMNELALLYREINAPAAEAPVFGFNEPEDYGAQADLDAKLHGVGVRFTRAHIERRF GLQPDEFILDGEKEAAADGDEAAFAEPGPDHQDALDALVAAILPESVKRNAKFIERLV ALLNKAQSFDEIALLLAEHLGQDADMRQQEDLLADLLTAAALMGRAAVRDEPDAA" misc_feature 1767298..1768713 /locus_tag="Deba_1596" /note="Protein of unknown function (DUF935); Region: DUF935; pfam06074" /db_xref="CDD:147953" misc_feature 1767571..>1768500 /locus_tag="Deba_1596" /note="Mu-like prophage protein gp29 [Function unknown]; Region: COG4383" /db_xref="CDD:34090" gene 1768805..1770118 /locus_tag="Deba_1597" /db_xref="GeneID:9494060" CDS 1768805..1770118 /locus_tag="Deba_1597" /note="COGs: COG2369 conserved hypothetical protein homolog of phage Mu protein gp30; InterPro IPR006528; KEGG: dde:Dde_3374 phage head morphogenesis protein, SPP1 gp7; PFAM: head morphogenesis protein SPP1 gp7; SPTR: Q30VX8 Phage head morphogenesis protein, SPP1 gp7; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: Phage Mu protein F like protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family" /codon_start=1 /transl_table=11 /product="phage head morphogenesis protein, SPP1 gp7 family" /protein_id="YP_003807559.1" /db_xref="GI:302343030" /db_xref="GeneID:9494060" /translation="MPLEAAPLAPAQALEFWKAKAQVTPAEFADLTQQAKARAFAVSG LSRRDQIAAVHAALQEALENGETLAAFKKRLAPLFEQKGWTGRAAWRVENIYRTNLQS AYQAGRHAQMKATADSRPFWRYLAIKDRRTRPTHLALHGLVFRHDHDFWATWYPPNGF QCRCTVQTLSQRQMDRRGLEAQTSTPRLVEPFDPASGNRLPARPLVPEPGWAGNVCHD WLHGLAPAQTAAPIITLATRTLCREGRGLFADAPCKPPLAGIERRHVLTLDEADIMPA GLADEDYVRAFLREFGLDDLDGSVVHELPGGLPVVISKALFVDKLSRTLKVGKGGRAP YMRILARTILSPYEIWWQTIRALDAKGAPTGRIREKISLLRLFAGADGKIGGFAVFDL IDGRQWRGTAIFTPGANKKNQATRDEYILRYLEDQRAGVLLYREP" misc_feature 1768964..1769302 /locus_tag="Deba_1597" /note="Phage Mu protein F like protein; Region: Phage_Mu_F; cl10072" /db_xref="CDD:142383" gene 1770602..1773631 /locus_tag="Deba_1598" /db_xref="GeneID:9494061" CDS 1770602..1773631 /locus_tag="Deba_1598" /note="InterPro IPR006935:IPR018187; KEGG: dau:Daud_0199 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; SPTR: B1I0R5 Type III restriction enzyme, res subunit; manually curated; PFAM: Type III restriction enzyme, res subunit" /codon_start=1 /transl_table=11 /product="type III restriction protein res subunit" /protein_id="YP_003807560.1" /db_xref="GI:302343031" /db_xref="GeneID:9494061" /translation="MANEFFVRPILNSPYEYPLKHWELDEGQPTGHVIESRRRAEYIT PIPKPKKVRGLATQKMLPLDEGKGLSDQQQQYDPTPIINELRRQVDQWREMPNPNDWL VTPETARLLSYWRHHHFSDIRPFFCQVEAVETAIWLTEVAPKMGKAGKRFLDYLANAN NDANPGLMRLALKLATGAGKTTVMAMIIAWQTVNAVRTPGSKKFTRGFLVVTPGITIK DRLRVLQPNDPDNYYRNRELIPGDMLVDLERAKIVITNYHALMLRERMDISKGGRSLL QGRGPAISTLETEGQMIQRVMPDLMGMKNIMVINDEAHHCYRERPGSAEIEDLKGEDK DEAKSNNEAARVWISGLEMVGRKLGLNRVFDLSATPFFLRGSGYAEGTLFPWTMNDFS LMDAIECGIVKLPRVPVADDVPGEDMPRLRNLWAHIGKDMPKKNRSKSKSLDPLKIPP MLQNALQALYGHYERTFNLWQEAGIASPPCFIVVCSNTASSKLVYDFISGFQRQNKDG SFTIQNGQLKLFRNFDESGNPLPKPRTLLIDSEQLESGEALKDDFRETFKDEIERFRR EIIERTGNRNGADNLSDQELLREVMNTVGKEGTLGASIRCVVSVSMLTEGWDASNVTH VLGVRAFGTQLLCEQVIGRALRRQSYDVNEDGRFNVEYADVLGVPFDFTAKPVVAPPQ KPRETVQVKAVRPDRDHLEITFPRVMGYRTELPEERLTAKFNKDSILELNQDLVGPSI TENSGIIGESVNLTLEDLEKVRPSTIAYELASHLVLNKWRDSDEEPKLYLFGQLKRIA KQWMDECLVCADGTYPGMLRYHDLKDTACERITKGIMDPLLVGDRPVKAILDPYNPTG STRHVNFRTSKTERWQTSPNHCHINWVVLDSSWEGQFCRVVEGHPQVKAYVKNHNLGF DVPYRFGAENRIYRPDFIVIIDDGRPDPLNLVVEIKGYRGEDTKEKKSTMETYWVPGV NNLGSYGRWAFAEFTEIFKLESDFRKLIDSFTAQQAA" gene 1773642..1776458 /locus_tag="Deba_1599" /db_xref="GeneID:9494062" CDS 1773642..1776458 /locus_tag="Deba_1599" /note="COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941:IPR002295:IPR002052:IPR005829; KEGG: sfu:Sfum_2856 DNA methylase N-4/N-6 domain-containing protein; PFAM: DNA methylase N-4/N-6 domain protein; SPTR: A0LM81 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase" /codon_start=1 /transl_table=11 /product="DNA methylase N-4/N-6 domain protein" /protein_id="YP_003807561.1" /db_xref="GI:302343032" /db_xref="GeneID:9494062" /translation="MAKRKAATPKSVETLKHEEATRKNIPTVEYQAVMHDKDKSPVRV AMERRNRDLDPQLVWRGKDEQDWSDLVVQAPPLYIQEKVQPKALVDDLMRLSKASEPA EPQLDLFADFNGIPEGADKTDFYQHDGKWSNRLILGDSLQVMASLAEREGLRGQVQCI YLDPPYGIKFNSNFQWSTTSRTVTDGKAEHITREPEQVKAFRDTWRDGIHSYLTYLRD RLTAARDLLAESGSIFVQIGDQNVHRVRALMDEVFGDENFIGEIAYHTTSGSTSEYIS NPKNYVHWYAKSRREMTFRRCFVPRIFNHEEPGPWQLVEYNGKRFGLNDFLKKGGMLN SPGVRIARMGDATSQRQGREAGENSAMGFSFELEGESYRPSGTRGWSTTITGLRRAAR ASRLIGVGKSIGLVRYFDESPYFPLNSSWDDTGGTIGAAKVYVVQTNIKVIQRCILMA TDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARARIMGARYPYYILADS PEGQQKVAEVTQGAPSSAPTHGNIRHGFVYERVPHITLKSIANNAEIDVIWERFQEQL EPLRAALNQAAGKAWEEWEIPRDAEAKWPAEAKDLHARWWELRIARQKEIDASIAAKA DFEYLYDKPYEDKKTVRVSGPFTVESVSPHRVMGVDEFDELIDPQDSIKDQSADEADF VKMILANLKTAGVQQSHKDDKIDFRTLVPWPGDYICAEGRYYEGGDEAGTGKRAAIFI GPEFGTVCREDLVAAAREAGEAGFDVLIACAFNYDAPSADFNKMGRLPVLQARMNAEL HMATDLKNTGKGNLFVIFGEPDIDILDVDDDQVQVRINGVDVFKPSTGEVQSDDTDGI ACWFIDTDYNEESFFVRHAYFLGAGDPYKALKTTLKAEVNEEAWETLYSDVSRPFEKP KTGRIAVKVINHLGDEVMKVFRVS" misc_feature 1774110..>1774523 /locus_tag="Deba_1599" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" misc_feature <1774887..1775114 /locus_tag="Deba_1599" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1776473..1776853) /locus_tag="Deba_1600" /db_xref="GeneID:9494063" CDS complement(1776473..1776853) /locus_tag="Deba_1600" /note="InterPro IPR009057; KEGG: rce:RC1_1105 hypothetical protein; SPTR: C4WG48 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807562.1" /db_xref="GI:302343033" /db_xref="GeneID:9494063" /translation="MKGDVLDELSAVIGADAALRLCRAFGGVSHYIPQNPATPNAMAR LLDDQAAWAKVCAYYGGAAITLPRGDNLLKRRRVDELLRAGAASHRVIAMQTGATERY VRARAKAMRRERARALPLFDRTLR" gene complement(1776843..1777199) /locus_tag="Deba_1601" /db_xref="GeneID:9494064" CDS complement(1776843..1777199) /locus_tag="Deba_1601" /note="KEGG: dde:Dde_3359 hypothetical protein; SPTR: Q30VZ3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807563.1" /db_xref="GI:302343034" /db_xref="GeneID:9494064" /translation="MLTEPEKLLAAINQRFGTVHAFCAANPELNRTTVYAVLRGRYKG NAGRQLGRIRAALMAAPADGAADLPGLVELEEVIREAACARCPVTRAGICKRCAPLHL QQAQAVLAFLERRRER" gene complement(1777193..1777627) /locus_tag="Deba_1602" /db_xref="GeneID:9494065" CDS complement(1777193..1777627) /locus_tag="Deba_1602" /note="KEGG: dde:Dde_3358 hypothetical protein; SPTR: Q30VZ4 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1018)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807564.1" /db_xref="GI:302343035" /db_xref="GeneID:9494065" /translation="MDRNAMLAKIHIGRKTMGWDEDAYRDVLRGRYGVDSAAKLKPAD LADMCAYLAGQGVSFKPAAKAKEKARWYAIPDRTPHCQQKRYIAALWRALGWKASGLD TRCKKQFGVDKFLWLHDQDKLQILAKDLHNRCKKRGIDPTPC" misc_feature complement(1777226..1777573) /locus_tag="Deba_1602" /note="Protein of unknown function (DUF1018); Region: DUF1018; cl01815" /db_xref="CDD:154603" gene complement(1777635..1777865) /locus_tag="Deba_1603" /db_xref="GeneID:9494066" CDS complement(1777635..1777865) /locus_tag="Deba_1603" /note="KEGG: hypothetical protein; SPTR: A9V0X5 Predicted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807565.1" /db_xref="GI:302343036" /db_xref="GeneID:9494066" /translation="MKKEQAMTILGAGVQRALKELYGGNVTFSLIIFSSDGTADHVTN GKDDGDDVIAALRAVADDLEAINSMPPVIGQA" gene complement(1777951..1778232) /locus_tag="Deba_1604" /db_xref="GeneID:9494067" CDS complement(1777951..1778232) /locus_tag="Deba_1604" /note="COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119:IPR010992; KEGG: saf:SULAZ_0074 DNA-binding protein HU 1 (DNA-binding protein II) (HB); PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: C1DXF9 DNA-binding protein HU 1 (DNA-binding protein II) (HB); PFAM: Bacterial DNA-binding protein" /codon_start=1 /transl_table=11 /product="histone family protein DNA-binding protein" /protein_id="YP_003807566.1" /db_xref="GI:302343037" /db_xref="GeneID:9494067" /translation="MNKKDLIAAVAGKLGYGPCAPVTGRVVEAAFEAMAEALGRGEQV RINGFGVWRVRGRKAREGRNPRTGESIQIPAASGVIFRPADALKGRVNH" misc_feature complement(1777963..1778229) /locus_tag="Deba_1604" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature complement(order(1777963..1777965,1777984..1777986, 1777990..1777992,1778002..1778007,1778071..1778073, 1778086..1778091,1778098..1778112,1778122..1778127, 1778134..1778139,1778146..1778148,1778194..1778196, 1778206..1778208,1778215..1778217,1778224..1778229)) /locus_tag="Deba_1604" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" misc_feature complement(order(1777978..1777980,1777987..1777989, 1777993..1777995,1778005..1778007,1778035..1778046, 1778053..1778055,1778059..1778064,1778068..1778070, 1778080..1778082,1778089..1778094,1778098..1778100, 1778104..1778106,1778149..1778151,1778221..1778229)) /locus_tag="Deba_1604" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" gene complement(1778237..1778746) /locus_tag="Deba_1605" /db_xref="GeneID:9494068" CDS complement(1778237..1778746) /locus_tag="Deba_1605" /note="KEGG: dvu:DVU1136 host-nuclease inhibitor protein Gam, SPTR: Q72CZ5 Host-nuclease inhibitor protein Gam, PFAM: Bacteriophage Mu Gam like protein" /codon_start=1 /transl_table=11 /product="host-nuclease inhibitor protein Gam" /protein_id="YP_003807567.1" /db_xref="GI:302343038" /db_xref="GeneID:9494068" /translation="MARMKPKAVVVASLEQATGALEELCVIRRSVTAITDQMNADIDQ AKAQAAGLAEPLLARQKALETALMTFGQLSRAELFAKRKSLETPFGAIGFRKSTRLVT LAKVKLSDVLEKLKQFAFVEAVKVRESVDKEAMRDWPDERLELVGMERKSADEFFIEL KAEDLGRKG" misc_feature complement(1778270..1778710) /locus_tag="Deba_1605" /note="Bacteriophage Mu Gam like protein; Region: Phage_Mu_Gam; cl01825" /db_xref="CDD:154609" gene complement(1778746..1778925) /locus_tag="Deba_1606" /db_xref="GeneID:9494069" CDS complement(1778746..1778925) /locus_tag="Deba_1606" /note="KEGG: gur:Gura_1571 multi-sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_003807568.1" /db_xref="GI:302343039" /db_xref="GeneID:9494069" /translation="METMISHKIRSHAVELRAIVDRVMSAEDVERAIRSINAIIAESE RVEGLEGAVLKPEAR" gene complement(1778903..1779550) /locus_tag="Deba_1607" /db_xref="GeneID:9494070" CDS complement(1778903..1779550) /locus_tag="Deba_1607" /note="KEGG: dma:DMR_14510 hypothetical protein; SPTR: C4XNG7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807569.1" /db_xref="GI:302343040" /db_xref="GeneID:9494070" /translation="MATPESDKLRRALLALCPDDKTIVCHQQLYEALGLEDEPAKARL RSRIKDLIRRGELRRIKGRDGCYTYHREAMPKRAGEGFGRMWRAIRAAKPGWTWQDIA QITRVDYTMVRRYAVWLADEGFIAQAGRRGNTRLWRSTGRAQEQRVAPLPPIRPKDPF EAERGAACRLVRLMMEADPNQPHVRTKIVKELGILAGRFAEAAKEDESHGDHDQP" gene complement(1779550..1780242) /locus_tag="Deba_1608" /db_xref="GeneID:9494071" CDS complement(1779550..1780242) /locus_tag="Deba_1608" /note="COGs: COG2842 Uncharacterized ATPase transposase; KEGG: dvu:DVU1139 bacteriophage DNA transposition B protein, SPTR: Q72CZ2 Bacteriophage DNA transposition B protein" /codon_start=1 /transl_table=11 /product="bacteriophage DNA transposition B protein" /protein_id="YP_003807570.1" /db_xref="GI:302343041" /db_xref="GeneID:9494071" /translation="MKKGVFVETSNVTRFRAAVAQARDFERGRPGMLMAWGEAGRGKT ICAMNAFAEGGGVYLRAWEGWSQSAFLQALCFEITGLRPRGSNRSKVAIIQALDPEPR AIYIDEADRLALGRLEDLRDIHDETGCPVVLIGEEGLAAKLSARRRIDDRIPAEFRIR FEPVTCQDISLYAMEAADLRLTPEASKFVHGLTRGNFRRVHNAMLSLEQMARAAEVDI IDQAMARRLGGK" misc_feature complement(1779580..>1780227) /locus_tag="Deba_1608" /note="Uncharacterized ATPase, putative transposase [General function prediction only]; Region: COG2842" /db_xref="CDD:32670" misc_feature complement(1779784..>1780017) /locus_tag="Deba_1608" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1779967..1779996) /locus_tag="Deba_1608" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1779919..1779936) /locus_tag="Deba_1608" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(order(1779814..1779816,1779832..1779849)) /locus_tag="Deba_1608" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(1780258..1782384) /locus_tag="Deba_1609" /db_xref="GeneID:9494072" CDS complement(1780258..1782384) /locus_tag="Deba_1609" /note="InterProIPR012337:IPR009061:IPR009057:IPR001584:IPR 012287; KEGG: dvu:DVU1140 bacteriophage transposase A protein, PFAM: integrase catalytic region; SPTR: Q72CZ1 Bacteriophage transposase A protein, PFAM: Mu transposase, C-terminal; Mu DNA binding, I gamma subdomain; integrase core domain" /codon_start=1 /transl_table=11 /product="integrase catalytic region" /protein_id="YP_003807571.1" /db_xref="GI:302343042" /db_xref="GeneID:9494072" /translation="MSVLFTAQQLANVLTVSVMTISRRANNESWPFSKRPGRGGGKLF AAADLPADVRAAITAHEAQNAVATRPSPSAGQAIPARAHEIGLAKLELHGAWRVHRLS AQAKTTADAAFLAAYNSGQSHPAVFKILGRVTKHQLYRWDRALKEAGGDYRALCDHRG WAQAQGAQGRISPEAQEILTKIYLQPQRPSVALAFRAMCAVLAERGLPLPTESTTRRF IQRYSRENHDLVVLMREGEKALADKVGPYITRDAGQLAVGDVLVADGHRLNFDCIHPF TGKPARMCLILWLDWASRMPVGWEIMPEENTTAISAALFMAIKNLGQTPKVVYLDNGR AFRAKFFSSAVDDELPMQTRGLYQRLGIAVQYSRPYQARTKIVERFFGTFDAQCARLL PSYRGANVADKPAYLARNEKFHRARHNDAVPTIAQATEIIQTYFGWYGQQPHEGLDGR TPLEVFAAGRGPGVDMDALAWDFLWRKEVRPSRCRVRLANVEYESDALYGLNEPVLAM YAWADMSQIWLFNRRGQALGQARPVAALHPVARHLGGEIDLEKIQQANKRQAKLKKDT MRLAREAGVSDEALGVFPHVALAREMVPLGDAPPERPAPAPGPVELSAEERRQIEAAQ RQFEARRRLAPAYARPEHATPLDRYGYLFDLKVFQHIDLVAEDQEFMAAYEASDEYKI TGRRFAQLRRLAQVEAETASLAARRG" misc_feature complement(1781665..1781964) /locus_tag="Deba_1609" /note="Mu DNA binding, I gamma subdomain; Region: HTH_Tnp_Mu_2; pfam09039" /db_xref="CDD:149935" misc_feature complement(1781233..1781592) /locus_tag="Deba_1609" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" misc_feature complement(1780795..1780968) /locus_tag="Deba_1609" /note="Mu transposase, C-terminal; Region: Mu-transpos_C; pfam09299" /db_xref="CDD:117843" gene complement(1782381..1782800) /locus_tag="Deba_1610" /db_xref="GeneID:9494073" CDS complement(1782381..1782800) /locus_tag="Deba_1610" /note="KEGG: dvm:DvMF_0711 hypothetical protein; SPTR: B8DK72 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807572.1" /db_xref="GI:302343043" /db_xref="GeneID:9494073" /translation="MSNPASQMDLFGPSVDIVPRLKAAMVHGLAESRLSREQVVERMN RLLAEAGVNVAITKASLDKWVSLSSPGHLIPLRLLPAFCQVVETTAPLAVLAAPLGAV IAGPREQRLMELGRAQLLAKQARKTRQRALLELEEMP" gene 1783235..1783984 /locus_tag="Deba_1611" /db_xref="GeneID:9494074" CDS 1783235..1783984 /locus_tag="Deba_1611" /note="InterProIPR001387:IPR015927:IPR010982:IPR019759:IPR 011056; KEGG: csa:Csal_1365 phage repressor; PFAM: helix-turn-helix domain protein; peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein; SPTR: Q1QXT8 Putative phage repressor; PFAM: Helix-turn-helix; peptidase S24-like" /codon_start=1 /transl_table=11 /product="phage repressor" /protein_id="YP_003807573.1" /db_xref="GI:302343044" /db_xref="GeneID:9494074" /translation="MSREIAFCHMPSKMLPLPPEIGDRVKAARESFGYNQKDFAELLA IGQSTLSRIENGERPPSPELLYRLALKFPSVDLRELLVGYPSCHICDNEPQLVINVLE NDLATGQDIAAADYLAVPLVDGKIAAGLGSVVWEDVQSVVLACRAELGNKRHLVSVKV CGDSMSPTVPDGATVVIDRDDWRPSGNRRHIWAIRDQWGGAAIKRLFKVDDGLLVISD NFDQYPPQPAWTADLRKLVIGRVVWMCRKLE" misc_feature 1783298..1783474 /locus_tag="Deba_1611" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(1783310..1783312,1783322..1783324,1783397..1783399) /locus_tag="Deba_1611" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(1783319..1783321,1783394..1783396) /locus_tag="Deba_1611" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(1783340..1783345,1783376..1783378,1783385..1783387, 1783397..1783402) /locus_tag="Deba_1611" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature 1783706..1783963 /locus_tag="Deba_1611" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature order(1783724..1783726,1783844..1783846) /locus_tag="Deba_1611" /note="Catalytic site [active]" /db_xref="CDD:119397" gene complement(1784718..1784793) /locus_tag="Deba_R0030" /db_xref="GeneID:9494075" tRNA complement(1784718..1784793) /locus_tag="Deba_R0030" /product="tRNA-Lys" /db_xref="GeneID:9494075" gene complement(1784902..1786017) /locus_tag="Deba_1612" /db_xref="GeneID:9494076" CDS complement(1784902..1786017) /locus_tag="Deba_1612" /note="COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterProIPR000014:IPR001932:IPR013656:IPR010822:IPR 000700; KEGG: gme:Gmet_2818 PAS/PAC sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; PAS domain containing protein; SPTR: C8QVW1 Putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor protein" /protein_id="YP_003807574.1" /db_xref="GI:302343045" /db_xref="GeneID:9494076" /translation="MNDNILEQASAEAILDHTGEGIYVTDLDCRIVFWNKPAERITGW KASEVVGRRCRDDILVHIDRHGNSLCMPGRCPLHRAMASGEPCAASLVFANHREGRRI PVAISVSPLFGKDGRVIGGVEVFRDESERMRQLEQARRIQRHALSAELPRKGVSVHAL YKPQEMVGGDFYQVEATPDGYALILADFAGHGLGAALYTMTMRTLWQENSRHLQHPAK LMSRINQTLEKLTVGDSFATAFAAHVEPVSGLMTYSSAGHTTAMLRAVDGGVSLLGPT DLALGMLAETQFIQESLIIKPGELLLVYSDAALETADLAGRMFGQDRLAGILTQADPD QPDQLLTDIEQALLNHAQSPNLDDDLTMLTVALAPRD" misc_feature complement(1785604..1785984) /locus_tag="Deba_1612" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(1785637..1785966) /locus_tag="Deba_1612" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(1785721..1785723,1785739..1785741, 1785832..1785843,1785886..1785888,1785904..1785906, 1785916..1785918)) /locus_tag="Deba_1612" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(1785694..1785696,1785700..1785702, 1785787..1785789,1785805..1785807,1785814..1785816, 1785838..1785840,1785856..1785858)) /locus_tag="Deba_1612" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(1784923..1785489) /locus_tag="Deba_1612" /note="Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cl00120" /db_xref="CDD:193664" gene 1786154..1786315 /locus_tag="Deba_1613" /db_xref="GeneID:9494077" CDS 1786154..1786315 /locus_tag="Deba_1613" /note="KEGG: dal:Dalk_3299 hypothetical protein; SPTR: B8FJ61 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807575.1" /db_xref="GI:302343046" /db_xref="GeneID:9494077" /translation="MIQVTITCGEYRGGRRLLALKRRLDEEGATLSESERREIEREIG ELERELGMD" gene 1786345..1787319 /locus_tag="Deba_1614" /db_xref="GeneID:9494078" CDS 1786345..1787319 /locus_tag="Deba_1614" /note="KEGG: dal:Dalk_2678 hypothetical protein; SPTR: B8FIX9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807576.1" /db_xref="GI:302343047" /db_xref="GeneID:9494078" /translation="MVLLPVTHQPGRHCASSGARDLACFHGLELSEAMCFGLGAGLGL WLMEAASPSRLIHLRSHDMEAQFFRRIGQDFRWTRFVDGPASHQGLIAALDDGRPALL RSDIYHLPYYNTKTHFPGHVIVAWGYDQAAEEFLLSDTERSELQRTPFAAVQLARFST DGYFKMNGDMYAPAALTDPGPLAPAVAQAIVFCSRRLLEGHGGHGGLTDMARWLAQMP AWGELPDWRWTTRFCYQMIERRGTGGGGFRLMYADFLDEAAELLPEVGRLKLPALMRA LAADWTALAMALKDASERDAPDFGRATEALAAVARAEVQYHRQAVLLA" gene complement(1787316..1789328) /locus_tag="Deba_1615" /db_xref="GeneID:9494079" CDS complement(1787316..1789328) /locus_tag="Deba_1615" /note="COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439:IPR017871; KEGG: sfu:Sfum_3314 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A0LNI5 ABC transporter related; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807577.1" /db_xref="GI:302343048" /db_xref="GeneID:9494079" /translation="MVTNGAMITLHDVHKFYGKQDVLRGVDLHVGPNMRLGLVGPNGA GKSTLLGLMLGQIEPDQGSVFRAKNLRMGYLPQDLLKLSGRTILELATDTGDSLAEVE AELEQVHAELANEKDPQAAAELMARQGQLQSVFENLGGYDLESRAQRVLAGLGFRQEQ LDREVSELSGGWLMRAALARILLSAPDVILLDEPTNHLDMESLLWLENQLTQMPCSLV LVSHDRVFLDKVVNRIVEVDEGRIFVYGGGYSEYEQQRASRRKAQQAAYDAQQERIRE MERFIERNRSRKSSAAQVQGRIKALEKMERLKPPHEDESISLELPPADRSAKVVVELL DVDLSYGPKQVYKGLNFIVERGDRIVLLGRNGAGKSSLLRLLTGAVEPTGGRRLVGGR VKMGVFNQHAMEDLDPERDALTELSTVAGMMPQSRQRAILGAFLFRGDDVFKKVKVLS GGERSRLTLAKLLIARPNFLLLDEPTNHLDLTSRMVLERALQEYDGTLVLISHDRHLV NIVANKIAHVEEGRVTLLPGNFDDFQRLWKKRLPQGGLEPEPMGPGGPAAPLEQAGEA DAAGAKKSAEQKRREAQARNELYRKLKPLRDELANVEHKLAQATAAVDELVAEMVAPQ AYADADRWRELSTRHHEAVQRLEKVSQRWERVALELEELEARHKEL" misc_feature complement(1787730..1789313) /locus_tag="Deba_1615" /note="ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488" /db_xref="CDD:30834" misc_feature complement(<1789056..1789307) /locus_tag="Deba_1615" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" misc_feature complement(1788606..>1788836) /locus_tag="Deba_1615" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" misc_feature complement(1788384..1788626) /locus_tag="Deba_1615" /note="ABC transporter; Region: ABC_tran_2; pfam12848" /db_xref="CDD:193322" misc_feature complement(1787763..1788338) /locus_tag="Deba_1615" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" misc_feature complement(<1787358..1787618) /locus_tag="Deba_1615" /note="conserved hypothetical protein YmdA/YtgF; Region: YmdA_YtgF; TIGR03319" /db_xref="CDD:188306" gene 1789418..1790716 /locus_tag="Deba_1616" /db_xref="GeneID:9494080" CDS 1789418..1790716 /locus_tag="Deba_1616" /note="COGs: COG1972 Nucleoside permease; InterPro IPR002668:IPR011642:IPR011657; KEGG: dat:HRM2_11540 NupC; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; SPTR: C0QLW0 NupC; PFAM: Na+ dependent nucleoside transporter C-terminus; Na+ dependent nucleoside transporter N-terminus; Nucleoside recognition; TIGRFAM: nucleoside transporter" /codon_start=1 /transl_table=11 /product="Na+ dependent nucleoside transporter domain protein" /protein_id="YP_003807578.1" /db_xref="GI:302343049" /db_xref="GeneID:9494080" /translation="MQAAPWYYNVISLIGLLMVTFLSGLCGLGRGPVPWRTVIWGLIL QLALAFFFFAVPAGGQAMLALNDVFLTLLASAKAGATFLFGPLAISPGQPGSIGFVFA VQALSTVVFFMACMAILYQLGLMQRVVRLLARLLARTMGLSGAESLGVASSIMVGAEM AGVVRPYLPEMTRSELFMLLTAAMATVASTVMGVIVANLHMYFPNIAGHLISASVISA PAAAVVAKLMEPETGQPLTAGQVVDPHFGRYDGVMEAVSAGALDGVKLAVGIAAMLLA FLSLTALLDQILSWLTGLVGLEGVGLKEVLTWLAWPFAVLMGVPLEDAPKVAALIGQR ALVTELPAYAELANMLARGDLAYSRSAVIASYALCGFAHVGSVAIFVGGFGALAPGRV GELARLGFKALWAATLVTVMTGCVAGLFAWGGRSILGIVH" misc_feature 1789439..1790683 /locus_tag="Deba_1616" /note="Nucleoside permease [Nucleotide transport and metabolism]; Region: NupC; COG1972" /db_xref="CDD:32155" misc_feature 1789457..1789681 /locus_tag="Deba_1616" /note="Na+ dependent nucleoside transporter N-terminus; Region: Nucleos_tra2_N; pfam01773" /db_xref="CDD:145105" misc_feature 1790093..1790677 /locus_tag="Deba_1616" /note="Na+ dependent nucleoside transporter C-terminus; Region: Nucleos_tra2_C; pfam07662" /db_xref="CDD:191803" gene 1790800..1792377 /locus_tag="Deba_1617" /db_xref="GeneID:9494081" CDS 1790800..1792377 /locus_tag="Deba_1617" /note="COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: dal:Dalk_4149 protein of unknown function DUF342; PFAM: protein of unknown function DUF342; SPTR: B8FMW3 Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF342)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807579.1" /db_xref="GI:302343050" /db_xref="GeneID:9494081" /translation="MSRGDRSRLALPEEQPKTTKAEFKDKLALEVSEDRMEARLSGEV PEGADRKQVQYAITEALKKSGVRYGMDAQAMRQAIEALLAGQRVQGLVVARGQAPVRG EDAAITPLVDFGAGVVGRVNKKGIVDFRDRGPIPTVQPGTVLATLKKGLRGEPGRDVL GKLVHPPEVRMLRLLPGDGVRIDDDGATVSAAVEGMPDRPEEERFVVQSVLDIAGDVD LNTGHIEFPGAVRVQGTIRSDFKVKCYGLTAETVEPRAIIDVKADVVVYGGIMGAVVR AGGNVMARFVRDARVVCNGDMNIDTEIIQSKLQAGGHIRVSGLESRIVDSHIAAIKGV QAGDVLCSRREATMIRIGVNPEFEKQYFANKRALESLVNQRDQIMEAVDAQKTELAGT EEELRHMIEAFHSMEGVKDREVHLTQINMIKPLREALKQGVAQGTLRLGEMVFEIQRL REQIARMEAVAPQGAIWLDVRGRAEQGVEIRTPRASLVLENTHQGFSAREATIQDKQT GEERPTVKLSRLRTTAA" misc_feature 1790878..1792308 /locus_tag="Deba_1617" /note="Protein of unknown function (DUF342); Region: DUF342; pfam03961" /db_xref="CDD:146542" gene 1792497..1793264 /locus_tag="Deba_1618" /db_xref="GeneID:9494082" CDS 1792497..1793264 /locus_tag="Deba_1618" /note="KEGG: sus:Acid_4073 alpha-2-macroglobulin domain-containing protein; SPTR: Q01Z77 Alpha-2-macroglobulin domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807580.1" /db_xref="GI:302343051" /db_xref="GeneID:9494082" /translation="MGEKKRLLTVLFLALCMCAPNAALAGDDPKARALLGQISLQLDA DNEWEACRLAVGMEQYKGTDSYALAEQKLLARGVSIAQPLHSYTIKQIVAVQNEAEQN RRKTGMLPRLGPRENFKDGWGMPLRVEFVTRETFVYVVRSAGPDKRYMTTDDLVIGTR GKAEGSLGADDKFKPAKKDDDAAATLESLIGQPPAKRADKPASSGDVTRNSLYHGQSR PDTKNQPADPLLLPGKQGGNPAEREITLDELKEVIGN" gene 1793295..1794077 /locus_tag="Deba_1619" /db_xref="GeneID:9494083" CDS 1793295..1794077 /locus_tag="Deba_1619" /note="COGs: COG1291 flagellar motor component; InterPro IPR002898:IPR000540; KEGG: dvl:Dvul_2319 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q72ED8 Chemotaxis protein PomA; PFAM: MotA/TolQ/ExbB proton channel family" /codon_start=1 /transl_table=11 /product="MotA/TolQ/ExbB proton channel" /protein_id="YP_003807581.1" /db_xref="GI:302343052" /db_xref="GeneID:9494083" /translation="MDLGTIIGIVVGLVLVVVSILLSGSLVAFIDVPSILIVIGGTIS ATLVAYPMSAVVRSMKASMSIFFQPRIDHVGTVRELLKAADAVRKEGPLALEKMKPPS EFMGTAFQLVADGMRPEDIRHVLTIEAEAAYSRSMEVIGVMEKMAELAPAWGMIGTLI GLVIMLLNLSDPSAIGPAMAVALLTTFYGALWANFLLSPGATKLEERAGRQSEDFKLV IEGAMGMARNENPRQIQQRLMGFMPPSDRAELQAKAMAKKKA" misc_feature 1793295..1794035 /locus_tag="Deba_1619" /note="MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568" /db_xref="CDD:186086" misc_feature 1793397..1793957 /locus_tag="Deba_1619" /note="Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811" /db_xref="CDD:31153" gene 1794082..1794825 /locus_tag="Deba_1620" /db_xref="GeneID:9494084" CDS 1794082..1794825 /locus_tag="Deba_1620" /note="COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: dsa:Desal_3399 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: C6BSJ2 OmpA/MotB domain protein; PFAM: OmpA family" /codon_start=1 /transl_table=11 /product="OmpA/MotB domain protein" /protein_id="YP_003807582.1" /db_xref="GI:302343053" /db_xref="GeneID:9494084" /translation="MPPEKKIKKGSPPWMATFADLSTLLLTFFVLLLSMANMDVQKFR EMLGSVQAAFGVQYEVQGDFQPVAVPTAAPSAQNAAAPSRRISEARAAMESRQMSEQV QNFVNETGLGSEVNVNAGNKGVRLRVKGHLFFEPGGAEIRQEAKKLLEGIAKVTKKFD FYLTVEGHTDDQPISTPRFPSNWELSAARAAAVLRYLAGDGVPEKRMSAIGYASSFPI AANTSEAGRNKNRRVEFVFTKQPPRLGID" misc_feature 1794121..1794798 /locus_tag="Deba_1620" /note="flagellar motor protein MotD; Reviewed; Region: PRK09038" /db_xref="CDD:181618" misc_feature 1794475..1794792 /locus_tag="Deba_1620" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature order(1794487..1794492,1794586..1794591,1794610..1794612, 1794622..1794627,1794634..1794636,1794760..1794762, 1794772..1794774) /locus_tag="Deba_1620" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene 1794930..1796594 /locus_tag="Deba_1621" /db_xref="GeneID:9494085" CDS 1794930..1796594 /locus_tag="Deba_1621" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR004090; KEGG: dat:HRM2_09140 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Q1K450 methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Protein of unknown function (DUF3365); methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_003807583.1" /db_xref="GI:302343054" /db_xref="GeneID:9494085" /translation="MKARLMRWSIGKRIILVNACFTLAIVASLMALYAVQQYRETIDA FIQAARITTLQVESSRQEMEDKWASGVFSVDQVRGYAKEGDMGKLLAVIPVVTAWQTA MRKSEEGGYTFKVPKFHPRNPKNEPDAVEAEALRRMESDNTNSYYVIDKDINSVRYFQ AVRLTKPCLLCHGDPATSKEIWGNDQGLDPLGARMENWKEGEIHGAFEVIYSLDPADR QMAASLAMAGGVAVVVLGLGVFLAMLLARNLGRPIKSAAAAVNSTALGDFTLAIQQAE LTRSDELGDMLRSVEKMNQDLSETVRHVAGAAGVVAENAQAISVGNLELSDRTQQQAS AIEQTASALEQMTSSVKQNAENATQANALAQRTAEVAHQGGQAVERTVTAMREVSVSS KKISDIIDVVNEIAFQTNLLALNAAVEAARAGEAGRGFAVVAGEVRGLAGRVSAASKE IQKLIVESVAKVDQGGRMVEESGRLLGEIIENVQHVSDTVAEISAASQEQAAGIEEVN KAVAQMDAAVQQNSALVEKAASNSEAMATAAEELRGLMGQFKVRGA" misc_feature 1794990..1795559 /locus_tag="Deba_1621" /note="Protein of unknown function (DUF3365); Region: DUF3365; pfam11845" /db_xref="CDD:192851" misc_feature 1795668..1795835 /locus_tag="Deba_1621" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 1795899..1796579 /locus_tag="Deba_1621" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 1796004..1796582 /locus_tag="Deba_1621" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(1796613..1797683) /locus_tag="Deba_1622" /db_xref="GeneID:9494086" CDS complement(1796613..1797683) /locus_tag="Deba_1622" /EC_number="6.5.1.4" /note="COGs: COG0430 RNA 3'-terminal phosphate cyclase; InterPro IPR013792:IPR000228:IPR013796; KEGG: pcl:Pcal_2009 RNA 3'-terminal-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region; PRIAM: RNA-3'-phosphate cyclase; SPTR: A3MXQ7 Probable RNA 3'-terminal phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase (RTC), insert domain; RNA 3'-terminal phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase" /codon_start=1 /transl_table=11 /product="RNA-3'-phosphate cyclase" /protein_id="YP_003807584.1" /db_xref="GI:302343055" /db_xref="GeneID:9494086" /translation="MPQVLKLRNAGAGRNQALRTALSLSMITGRPFEFFDAVDDGQHP KPGLGPGGFTAVKAAAAVSGAVYEARLGNPDGSFRPREIRPDAYVFDVSAQRKSAAAV TPIMLCLLPALALAAGDSSLVVTGGTHVHAAPTSDEMRYVLAPTMSWLGLPVSCSEIA PGFLPLGGGEAEMQVKGPAFIRSLQAQGPFMPRKVGLEIVSSGLPVHLAEMAMQGAQD RLALKGVRAESRIRRARGGHGLSVLAWAQSAEGLCVGFSALGHRGGRPEAVAIEAVEG LLTFLQSGVGLPARMAGDLLTILACAEGVSRLSLPSLPAALKASAKVIEAFWPGSLQL LEPRFDKPAEIRVIGQDFGRQG" misc_feature complement(1796685..1797653) /locus_tag="Deba_1622" /note="RNA 3'-phosphate cyclase; Region: RNA_3prim_cycl; TIGR03399" /db_xref="CDD:163249" misc_feature complement(1796772..1797653) /locus_tag="Deba_1622" /note="This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a...; Region: EPT_RTPC-like; cl00288" /db_xref="CDD:185884" misc_feature complement(order(1796805..1796807,1797363..1797365, 1797627..1797629)) /locus_tag="Deba_1622" /note="putative active site [active]" /db_xref="CDD:73274" gene 1797885..1801328 /locus_tag="Deba_1623" /db_xref="GeneID:9494087" CDS 1797885..1801328 /locus_tag="Deba_1623" /note="COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR004576:IPR014001:IPR001650:IPR003711:IPR 011545:IPR005118:IPR014021; KEGG: gsu:GSU0017 transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: Q74H75 Transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd)" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="YP_003807585.1" /db_xref="GI:302343056" /db_xref="GeneID:9494087" /translation="MRDDGAALIGGVEGAARAFALARLWLDIPGPTLVVCPTLPVAET LCRDLEFFLGAAGPVRLFPSYEVSPYQGVDPPAEVTARRLAILWELIAEERPLIVVTS ARALAGRQPPPEHLVDHSLVVEPGATLERDELVRYLVDGGYSPAPLVEQVGDFAVRGS VVDFFGPLLDDPVRVEFFGDEIDSVRRFDPVDQRSQLPLTGATLIPCLPVELSAPAVE RAVERLRRLAKDEGLGARRLSELVERLERRAPFAGLEGLLPLFFQRSGDLFDYLPEGC RRVVIEPAEVEARLRAEQERLAEGFAQAREEGAIVLAPEMLCRTPAQVQQRLAAGPRL LCRALAMGGEEQGGRAIRLRAAAHTGLRQELCRGGEGSLIASLLQWCAAKNEQGRQVA LVCRSRTQVERLAELLAQREAPCRVIQAPAQAEGFVRRPEDSLLLLQGGLTVGFEPDD LPLCFVTEDEIFGAPRIVRQKAPPKLSAMLAALDDLAPGDLVVHIDHGVGRYQGLKTM AVGAAESDFLEISYKDGDRLYLPADRMALISKYRGPDGAAPALDRLGGKAWAKAKGRV KKAVETIAHDLVELYAARQASKGFAFTPPDGAYREFEAGFPYEETPDQAQAIEDVIAD MITDKPMDRLVCGDVGYGKTEVALRAAFLAAMQGKQVAFLAPTTVLTEQHCQTLTQRL KDQPLVVESLSRFKTPAQQKDILERLRQGKVDILVGTHRIIQKDAVFKDLGLVIVDEE QRFGVKDKERLKKMRRLVDVITLTATPIPRTLQMSLSGVRDLSVINTPPEDRQSIKTY LSAFSPGGVSEAVARELERGGQVFFVHNRVQDLDKMAGLVRRLAPQARVAMAHGQMAE KELEKVMLQFVHKEVDVLVCTTIIESGLDIPSANTIIINNADKFGLSQIYQLRGRVGR SAQRAYAYLFIKSEAALSSDARKRLKALMDFTQLGSGFAIAMHDMQIRGAGNMLGEAQ SGMAAEVGYELYLGMLEDAVARLKGEAPSEGPEPEMNLALPASLPEGFVPDADVRLSL YKRLSAARGQEDVEAIGAELADRFGPPPRAVSNLLESVSLKALLRRMHATRLDLAAEA LTVQFTQTTALDLERLLDMAQSQPDKLRVFPDGKVHLKLEPDQEPMAGARRFLEHIAQ A" misc_feature 1797906..1801322 /locus_tag="Deba_1623" /note="Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197" /db_xref="CDD:31390" misc_feature 1799358..1799630 /locus_tag="Deba_1623" /note="CarD-like/TRCF domain; Region: CarD_TRCF; cl00588" /db_xref="CDD:193879" misc_feature 1799775..1800185 /locus_tag="Deba_1623" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 1799802..1799816 /locus_tag="Deba_1623" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 1800096..1800107 /locus_tag="Deba_1623" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature 1800303..1800656 /locus_tag="Deba_1623" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(1800360..1800371,1800435..1800440,1800513..1800521) /locus_tag="Deba_1623" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(1800537..1800539,1800603..1800605,1800615..1800617, 1800624..1800626) /locus_tag="Deba_1623" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 1800909..1801211 /locus_tag="Deba_1623" /note="TRCF domain; Region: TRCF; pfam03461" /db_xref="CDD:190644" gene 1801333..1801974 /locus_tag="Deba_1624" /db_xref="GeneID:9494088" CDS 1801333..1801974 /locus_tag="Deba_1624" /note="InterPro IPR005834; KEGG: ppr:PBPRA2135 hypothetical protein; PFAM: haloacid dehalogenase; SPTR: A6FCM0 Putative uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase" /codon_start=1 /transl_table=11 /product="haloacid dehalogenase" /protein_id="YP_003807586.1" /db_xref="GI:302343057" /db_xref="GeneID:9494088" /translation="MHLVMFDIDGTLVQSTGFDSDCFQSSVRDVLGTHIDPNWGRYTH VTDDGVLGQILDEHNVREGRERIFGSVKELFIQRIANHIAEHGVRPVPGAREFLAALA ARDDVRLALATGGWLQTAELKLRAAAIDYAEIPIATSDDHYSRVKIMETAALRGGCGQ CVSKTYFGDADWDMKASAKLGYNFVLVGNGFAYGQSIADYTDIGGILALIGLR" misc_feature 1801333..1801941 /locus_tag="Deba_1624" /note="Predicted phosphatases [General function prediction only]; Region: Gph; COG0546" /db_xref="CDD:30892" gene complement(1802048..1803406) /locus_tag="Deba_1625" /db_xref="GeneID:9494089" CDS complement(1802048..1803406) /locus_tag="Deba_1625" /note="COGs: COG1749 flagellar hook protein FlgE; InterProIPR020013:IPR001444:IPR011491:IPR010930:IPR 019776; KEGG: pau:PA14_50450 flagellar hook protein FlgE; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein; SPTR: Q02IP7 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins" /codon_start=1 /transl_table=11 /product="fagellar hook-basal body protein" /protein_id="YP_003807587.1" /db_xref="GI:302343058" /db_xref="GeneID:9494089" /translation="MQATSFFNGVSGLKSFSQGLNIVADNLANSNTYGYKSSRAEFAD VLYRELSYTGSDLTTEIDQVGQGATVWSHQLMNQGAIQETGRTLDLAIDGNGFFTVKN LDTEELYYTRAGQFGVDGVVGQEGFIINDQGYRLQGFAIGDDGEPIVGNLIDLQIPVE NLPGEATTIVGLGVNLNPADTRVNQVATDIDPEVSGTYNYSSSTTVYDANGDTHQISV YYQRVDDYAGTVPEGGQTVWKASTFETQDGEQVANPADPANTFYLHFTDTGALAGVTD STGATVSADSIGLTMDFGEAGQQAITLDFAPAAGQATTQVAEGYSTSTNTQDGFAEGG LESVAVSEDGFVTAYYSNGEMVDVGVVALTTFASPGNLRREGDNLWAYDADAGEIWVG QPTDEEFAMGAIEDQSLETSTVDTATEMMNMIIYQRAFQASSKTVTTSDEMIKTAINM KT" misc_feature complement(1802054..1803394) /locus_tag="Deba_1625" /note="flagellar hook protein FlgE; Validated; Region: flgE; PRK05682" /db_xref="CDD:180198" misc_feature complement(1803299..1803391) /locus_tag="Deba_1625" /note="Flagella basal body rod protein; Region: Flg_bb_rod; cl15245" /db_xref="CDD:197453" misc_feature complement(1802417..1802836) /locus_tag="Deba_1625" /note="Flagellar basal body protein FlaE; Region: FlaE; pfam07559" /db_xref="CDD:191784" misc_feature complement(1802114..1802395) /locus_tag="Deba_1625" /note="flagellar basal-body rod protein FlgF; Region: flgF; TIGR02490" /db_xref="CDD:188226" misc_feature complement(1802057..1802173) /locus_tag="Deba_1625" /note="Domain of unknown function (DUF1078); Region: DUF1078; pfam06429" /db_xref="CDD:191521" gene 1803676..1804629 /locus_tag="Deba_1626" /db_xref="GeneID:9494090" CDS 1803676..1804629 /locus_tag="Deba_1626" /note="COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR015391:IPR000297; KEGG: pca:Pcar_0090 parvulin-like peptidyl-prolyl isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; SPTR: Q3A8D9 Parvulin-like peptidyl-prolyl isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain" /codon_start=1 /transl_table=11 /product="PpiC-type peptidyl-prolyl cis-trans isomerase" /protein_id="YP_003807588.1" /db_xref="GI:302343059" /db_xref="GeneID:9494090" /translation="MRMNVRPFFALACLLLVSTAAALLVACDRSGSTAWVAAVDDEKI SLHQFNQKAAFMGLGADAKSLDAGLRKAVLDEMIQRLVILRQAAKLGVELSDQELDSE EERIHHGMDAAAFREGMLARGMDYQDWRDELARDLLVRKTIDLVLTPRISVDQSEIVA YYDEHKDQFSRPEQILALHLVLPDKKMADELVARMDRGQDMLAAAKEMGVALGSDGRP DWLGRGHMPGKLEKAVFAARPGRPAGPFHSDYGYHVVWVIEKRPAMVLPLAEAAGRIQ DALAKEKKDALTVGWLEELKSESKIWVDPHFLKSGMGSNKR" misc_feature 1803781..1804095 /locus_tag="Deba_1626" /note="SurA N-terminal domain; Region: SurA_N; pfam09312" /db_xref="CDD:150092" misc_feature 1804228..1804452 /locus_tag="Deba_1626" /note="PPIC-type PPIASE domain; Region: Rotamase; cl08278" /db_xref="CDD:195679" gene 1804636..1805619 /locus_tag="Deba_1627" /db_xref="GeneID:9494091" CDS 1804636..1805619 /locus_tag="Deba_1627" /note="InterPro IPR015391:IPR000297; KEGG: sat:SYN_02487 peptidyl-prolyl cis-trans isomerase; PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: Q2LRQ8 peptidyl-prolyl cis-trans isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain" /codon_start=1 /transl_table=11 /product="SurA domain protein" /protein_id="YP_003807589.1" /db_xref="GI:302343060" /db_xref="GeneID:9494091" /translation="MRLRSVIAGLAFVTMAFAPLAVLAEELVNRVVAVVGDEPITAAE LDRSIQGLLQRLQMMQQQQGQNMAMPPAAEVRYMALNSLIDEKLFNKEVERLKISVSE EEVSMFLERLKAANNMTQQEFIARLNETGMTPEEYREKVRNDQLKRKLINYEVKNKVV ISDKEVDDYLAEHPELVQGGGPQLTIQALFLKLPENAGDDVKAQLRAKAEALREEAVD GADFDEMCRANSQGPGAASGGKIGPLSKSDLLPEMGKALETMKEGDMSPVLDIPSGVV FMRLISLTDGKEGSAEVRDQVRARLENNQLEERFGEWMKELRAKTYIQIIE" misc_feature 1804717..1805073 /locus_tag="Deba_1627" /note="SurA N-terminal domain; Region: SurA_N; pfam09312" /db_xref="CDD:150092" misc_feature <1804990..1805550 /locus_tag="Deba_1627" /note="nitrogen fixation protein NifM; Region: nifM_nitrog; TIGR02933" /db_xref="CDD:131979" misc_feature <1805287..1805478 /locus_tag="Deba_1627" /note="PPIC-type PPIASE domain; Region: Rotamase; cl08278" /db_xref="CDD:195679" gene 1805951..1807801 /locus_tag="Deba_1628" /db_xref="GeneID:9494092" CDS 1805951..1807801 /locus_tag="Deba_1628" /note="COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873:IPR020845; KEGG: dol:Dole_3006 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZZ36 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003807590.1" /db_xref="GI:302343061" /db_xref="GeneID:9494092" /translation="MATIGQATANESFSIDDPIEETIPQLMHRRAAELGSRTALRYKK FGLWRDVSWREYGQTVRDVAMGFCALGLRPGEVVAIIGDNCPEWLYADLGCMSAGGVS VGIYTTNSADECAYILKHSETKIYIVENEEQLDKALEVRDDCTDMKKIVVIDTEGLRN FSDPMVISFEQLIALGKEHDAKNPGLFERRLASRKPDDLALLIYTSGTTGPPKGAMLS HENVLWTSKAMSTAQEILQDDESISFLPLSHIAERNFSTFMPLIFKNTVNFIENVDTV TDNVIEISPTVFFAVPRIWEKYASTIFIKMKDATWFKKAVFATAMSIGKKRAEARLSP QGVPALLKLTYALAHFAVFRKLKERLGFERMRVAISGAAPISADVLKFYHAIGIPLRQ VYGQTEDTGPTSMHQDDIIEADNVGPAIPGVQIKIAEDGEILVKGRNVFMGYYKNPDA TAETLVDGWLHSGDVGTIDERGFLKITDRKKDLIITSGGKNIAPQNIENQLKASPYIN DAVAIGDRRKYMTALIFIDEDNVVKYAQDHKVPFTTYETLTQRKEVVELVQQEIDKVN ETLARVEQIKKFTILPKKLMEEDGEVTPTMKLKRKAINKAYSEMIEAMYR" misc_feature 1806008..1807795 /locus_tag="Deba_1628" /note="Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Region: FAA1; COG1022" /db_xref="CDD:31225" misc_feature 1806104..>1806607 /locus_tag="Deba_1628" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature <1806956..1807492 /locus_tag="Deba_1628" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 1807985..1808560 /locus_tag="Deba_1629" /db_xref="GeneID:9494093" CDS 1807985..1808560 /locus_tag="Deba_1629" /note="COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cycothcome C subunit; InterPro IPR005126:IPR011031; KEGG: dal:Dalk_2564 NapC/NirT cycothcome C domain protein; PFAM: NapC/NirT cycothcome C domain protein; SPTR: B8FFJ7 NapC/NirT cycothcome C domain protein; PFAM: NapC/NirT cycothcome C family, N-terminal region" /codon_start=1 /transl_table=11 /product="NapC/NirT cycothcome C domain protein" /protein_id="YP_003807591.1" /db_xref="GI:302343062" /db_xref="GeneID:9494093" /translation="MPDQEAAPAEQNKKRWRGRTLTVGLLVALGVVLGFPLFSLTYYT MARTSTPQFCASCHEIQPAYFDWQTSSHVVNDKGFVADCMDCHLPAPHDTINFFYVKT AHGIRDVLLHFVGGPYDRQAMRQQAWATIENDQCLKCHRNLLYMPYQRGAMLAHRAVI YPRPGYEKRCTDCHRNFVHRPRGLYAYDQKM" misc_feature 1808111..1808521 /locus_tag="Deba_1629" /note="cytochrome c-type protein NapC; Provisional; Region: PRK10617; cl09485" /db_xref="CDD:186859" gene 1808583..1809983 /locus_tag="Deba_1630" /db_xref="GeneID:9494094" CDS 1808583..1809983 /locus_tag="Deba_1630" /note="InterPro IPR011031; KEGG: dal:Dalk_2563 hypothetical protein; SPTR: B8FFJ6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807592.1" /db_xref="GI:302343063" /db_xref="GeneID:9494094" /translation="MKRLLAWTVALLAAAVLGGAALAANESPNMPKQKEFRIERGLSP QALACIECHKAENPGIFADWAHSRHASAGITCLDCHQADEHDPDVASGHFKQYERADS PWGKSEYRVAIAAAVTPKDCSRCHPDEAKQYAQSKHANTMEIIWKIDPWLNQGQNSDF ERANGCFHCHGTVLAIKDGKLDPLTWPNVGVGRVNLDGSKGSCAACHTRHRFSVAEAR KPETCGQCHLGPDHPQMEIWEESKHGAIYNGAGTTWNWDAAPGTWTPGVDYRSPTCAA CHMSGAGAVLTSHDVTERLSWELQAPLTIRPQDFKAFPAKSDWQDERKKMQQICLQCH AQQWVESHYSQMDGAVLLYNETYYKPALAKLEELFAKNLLPKDAYFRSPLWTEFYELW HHEGRRARMGSAMMAPDYAWWHGFYECKKRYVVFMHEADELIAHNKKAYVAQDFPGAG GSTQKPPQLFGPEAGK" misc_feature <1808688..1809287 /locus_tag="Deba_1630" /note="decaheme c-type cytochrome, DmsE family; Region: decahem_SO; TIGR03508" /db_xref="CDD:163300" gene 1810202..1810372 /locus_tag="Deba_1631" /db_xref="GeneID:9494095" CDS 1810202..1810372 /locus_tag="Deba_1631" /note="KEGG: dal:Dalk_2368 hypothetical protein; SPTR: B8FAX5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807593.1" /db_xref="GI:302343064" /db_xref="GeneID:9494095" /translation="MSQPMKMSWKCTNCGYTMEIQRPPEKCPSCKQKCEFIDVTCYTP DCFGVGKDDRLR" misc_feature 1810226..>1810300 /locus_tag="Deba_1631" /note="Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected...; Region: rubredoxin_like; cl00202" /db_xref="CDD:185824" misc_feature order(1810232..1810234,1810241..1810243,1810280..1810282, 1810289..1810291) /locus_tag="Deba_1631" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29431" gene 1810389..1810736 /locus_tag="Deba_1632" /db_xref="GeneID:9494096" CDS 1810389..1810736 /locus_tag="Deba_1632" /note="KEGG: sat:SYN_00675 cytoplasmic protein; SPTR: Q2LV52 Hypothetical cytosolic protein; PFAM: DsrE/DsrF-like family" /codon_start=1 /transl_table=11 /product="cytoplasmic protein" /protein_id="YP_003807594.1" /db_xref="GI:302343065" /db_xref="GeneID:9494096" /translation="MKKVVLFAFNGEVMCFVHVLLNALDMEAKGWEVGVVIEGAATKL VPALAHADNPMHGLYKKVKDAGLIWAACKACSQKMGVLEAVIAEGLPLGEDMNGHPGM AAYLERGFELITF" misc_feature <1810455..1810733 /locus_tag="Deba_1632" /note="DsrE/DsrF-like family; Region: DrsE; cl00672" /db_xref="CDD:186138" gene 1810765..1811355 /locus_tag="Deba_1633" /db_xref="GeneID:9494097" CDS 1810765..1811355 /locus_tag="Deba_1633" /note="COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: dal:Dalk_3455 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: B8FLJ7 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="YP_003807595.1" /db_xref="GI:302343066" /db_xref="GeneID:9494097" /translation="MNVLGIYGSPRKGGNSDLLLDQALQGAREAGATTEAVYCRKLRI SGCIECGACEATGQCVIDDGMQDVYPLLRQADAIILAEPIFFYGAPAQTKALIDRAQA EWSRRLLGKKTKEERKVYDGGRGYLIAVGATQGKNMFVCVELEAKYFFDALDMSYEGG MLIRGVEAKGGILEHQQTMQQAHDLGRAIAGQAGRS" misc_feature 1810765..1811349 /locus_tag="Deba_1633" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 1811367..1811801 /locus_tag="Deba_1634" /db_xref="GeneID:9494098" CDS 1811367..1811801 /locus_tag="Deba_1634" /note="COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: dol:Dole_2648 flavodoxin/nitric oxide synthase; SPTR: A8ZX72 Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin" /codon_start=1 /transl_table=11 /product="flavodoxin/nitric oxide synthase" /protein_id="YP_003807596.1" /db_xref="GI:302343067" /db_xref="GeneID:9494098" /translation="MAKVLVAYATRAGETKKIAELIAEGLRFGLAEVELKDAAEIKSP EALGGYDGYVFGSATYHGEMLPSMKQLLFLGEKADLAGKVGASFGAYGWSGEAPERIF ETMRHIFKMDMVGDSLRLKAASLDGAVPMAQGYGKQVGAKLA" misc_feature 1811376..1811783 /locus_tag="Deba_1634" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 1812278..1814449 /locus_tag="Deba_1635" /db_xref="GeneID:9494099" CDS 1812278..1814449 /locus_tag="Deba_1635" /note="COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dat:HRM2_47540 outer membrane receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C0QHE4 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003807597.1" /db_xref="GI:302343068" /db_xref="GeneID:9494099" /translation="MTRAAKGEVRMRCHAMLKAVGKALIATTLLTMACATPAAWAADE ATAEAKAAGEEKQVHKLDQIVVTGQQAGQQVELTPEASTIVLDDYLTIDTPQNIGDYM KNLIMFDYRDTSDLVPGSDSFNMRAWDTNRFTMAVDGVDLRKTGGRNANNSVDYATLP PFLVEKIEVLPGPHWALYPAKSIGGVVNLVSRAPMLKESAKPDVKFSGSYKSYNTQNY NLSGQGSADQFTYDVGFQYYKTDGYLRNSEAEISTGVGRAGYVIPSGGYVALTGSYTD NKRNDPVNNDPNSSDYDSDYPTVTNSARNMSQNPTWNGDSKRLRLDYQQPWAIGDVSL DAYYGEEYKNRAYYNNGKLSELFTRWYQTGAKLQDKFSFAPNHVTTVALDGQQAWDGG KDTGDKDKRLRILGMAAQHEWTIIPRLKLTLGLRYEHDTIWVSNSYITTEGEWIERNF DGLMPKSFLTYQMDDLALWLRDTSFSVGVSRIWHAPDSHSLYNPQGRPTGAWLDPEQG VGLDAILERRLFGNVRAKLDYFYYAINDYIASNTSYAKYTPSKSNPVKPGQECKDYFI NLDQMITQGIDLEFSGNITEKLSFYLGYAYLDMENQGDELAGVDAAADRAKHRVKAGL SYEIIKGSAVLLDYQFQDKQVNEYSEEIAEDEWIVRKVSIDAYSLVNIGFRQRLFQQW GPLHDATARVFIDNLFDEEYQDARGWPATDRVYGVGLSFSM" misc_feature 1812458..1814443 /locus_tag="Deba_1635" /note="TonB-dependent heme/hemoglobin receptor family protein; Region: TonB-hemin; TIGR01785" /db_xref="CDD:162536" misc_feature 1812632..1814443 /locus_tag="Deba_1635" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1812644..1812661,1812680..1812697,1812707..1812712, 1812758..1812790,1812824..1812850) /locus_tag="Deba_1635" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature 1813343..1813345 /locus_tag="Deba_1635" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1814515..1816155 /locus_tag="Deba_1636" /db_xref="GeneID:9494100" CDS 1814515..1816155 /locus_tag="Deba_1636" /note="COGs: COG2875 precorrin-4 methylase; InterPro IPR000878:IPR014777:IPR014776; KEGG: ppd:Ppro_1250 uroporphyrin-III C/tetrapyrrole methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: A1ANF1 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases" /codon_start=1 /transl_table=11 /product="uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase" /protein_id="YP_003807598.1" /db_xref="GI:302343069" /db_xref="GeneID:9494100" /translation="MNGKVKQLARMLALAAALCLSVAGLALAAGQGSYQLVGLGPGAA DLMTPRQLAAIEAADIVFCDDKTKQMLAANVDLSGKEIIGGYGLAFPYFGKDCAKVPA EAGKRWGKSCEEFHKLQAEFVAMVQKAVAQGKKVVMTSGGDPTIYGPGVWTLIALKDL QPTVVPGLSALNAGNAALKASLGEVIITAPFDKPGQKDNIENMAGQPKATMVIYMPRD MDKLLARLAKAYPADTPVGVVENAGGAEKQKVALGTIADIGRKLGDMKAMNCLVYVGQ PLAKAQFNPADTPGAQSGQGKYYLVGMGPGDADLATLRALEVIKKADLIFVGRGMKER FAKELAGKNVVEGYYRLFPFYGQDCSKIPAAEKSRERMSCEEYQQKQAEFAAMVRQAV AKGQTVAMLDSGDPLIYGPCSWSLIELRDIPTEAVPGMSCFNAANAAVGAGITEGKSS HSVLLASGWSVEEMAKHQAAMVLFTMRTEFKKFVDALLKSYPPETPVAIVFSAGYAKE EHVLRGALGGVLQQVEGQKLPFEHLLYVGDFLTNDSPY" misc_feature 1814620..1815288 /locus_tag="Deba_1636" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" misc_feature 1815397..1816134 /locus_tag="Deba_1636" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene 1816208..1817071 /locus_tag="Deba_1637" /db_xref="GeneID:9494101" CDS 1816208..1817071 /locus_tag="Deba_1637" /note="COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: ppd:Ppro_1251 ABC-type Co2+ transport system periplasmic component-like protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: Q1NY28 ABC-type Co2+ transport system periplasmic component-like; PFAM: Nickel uptake substrate-specific transmembrane region" /codon_start=1 /transl_table=11 /product="Nickel transport complex, NikM subunit, transmembrane" /protein_id="YP_003807599.1" /db_xref="GI:302343070" /db_xref="GeneID:9494101" /translation="MKKSLIMTALLGASLLLCAPLALAHDLWLNPDNARPNVGDAVKV DIGFGHGYPADRAGEPLKEGMQIDVTAVGPDGQAVAVQSPSAGSRQLTVDKPGAYMVQ AQTKPGFFCRTKDGMRRGDKKQNPGATKCMSFTMCANAPLVAGPGGGEFVMAADQALQ IQPLADLATVKKGDALPVRVLFEGKPLAEAKVVATYAGYKPQPPAGAAAPPKDNKPLS RREAARQKAMQKTAVHFPVEVKTDAQGQATLKLDQAGWWLVLVGHATPYADPSVCDEN MYKTSFTFNVN" misc_feature 1816289..1817065 /locus_tag="Deba_1637" /note="ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: CbiK; COG5266" /db_xref="CDD:34863" misc_feature 1816289..1817008 /locus_tag="Deba_1637" /note="Nickel uptake substrate-specific transmembrane region; Region: NikM; pfam10670" /db_xref="CDD:151174" gene 1817097..1818479 /locus_tag="Deba_1638" /db_xref="GeneID:9494102" CDS 1817097..1818479 /locus_tag="Deba_1638" /note="COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: ote:Oter_3914 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: B1ZZB6 Amino acid permease-associated region; PFAM: Amino acid permease" /codon_start=1 /transl_table=11 /product="amino acid permease-associated region" /protein_id="YP_003807600.1" /db_xref="GI:302343071" /db_xref="GeneID:9494102" /translation="MSDKCNGLERALRPLDAVMIVVGNVVGVGIFTTTGFIAGDIADA WLIMAVWLLGGALTLLGALSYGELGAAFPRAGGDYVYLREAYGPLAGFLVGWVGFFII NPGSIAALALGLAEYLLPLAAGPAEYPVAKKVVALAVIVLFSALNYFSVRWACRVQNA VSGLGLLTIIVVAAAGFIWGRGDWANFDFHGPSASLADLFGPAMVSVFFTYSGWFVSA YVAGELKEPQKSLPISLIISSLLVMALYVLMNALYIYALPVPGMAGVVDIARQACLAL FGGPWAANLVSLMIIVAILGSLNSVVLTAPRIYYAMASDEVFPARLARVHPRFRTPHW AIGAQTVLSCLLVLVGNFYQLLSYTVFFMLLTSTATALGVFVLRRRKPDLTRPYKVWG YPYTTLAFVAAYAWIAARIFWHNPWDAAMGLLITLSGVPFYLWWSRRDVESQETAMGL EAERGQESRP" misc_feature 1817232..1818404 /locus_tag="Deba_1638" /note="Transmembrane amino acid transporter protein; Region: Aa_trans; cl00524" /db_xref="CDD:193853" gene complement(1818572..1818904) /locus_tag="Deba_1639" /db_xref="GeneID:9494103" CDS complement(1818572..1818904) /locus_tag="Deba_1639" /note="KEGG: rrs:RoseRS_3904 hypothetical protein; SPTR: A8UTG9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807601.1" /db_xref="GI:302343072" /db_xref="GeneID:9494103" /translation="MREVDVYTSCLLPELDDGLIVPETVSRMAYFRQGIADVWDELTA EERALVAASDAVLIDAADKVAEFWRVDSVASIRERDQPPKEAWWWWLHEIAEGAFPAE LLPKAARP" misc_feature complement(<1818593..1818904) /locus_tag="Deba_1639" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" gene complement(1818934..1819269) /locus_tag="Deba_1640" /db_xref="GeneID:9494104" CDS complement(1818934..1819269) /locus_tag="Deba_1640" /note="KEGG: saf:SULAZ_1081 hypothetical protein; SPTR: A8UTG9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807602.1" /db_xref="GI:302343073" /db_xref="GeneID:9494104" /translation="MRQDVVDYADGLLPELDETMLAPETISRRAYRRQELHEVWHVLT AEERALVAQADLALIAAADMVAVYWRTDDIKRNREKYQPPKEVWWWWLHEIAEGAFPA ELLPKAARP" gene complement(1819351..1819959) /locus_tag="Deba_1641" /db_xref="GeneID:9494105" CDS complement(1819351..1819959) /locus_tag="Deba_1641" /note="COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: dvl:Dvul_1936 cobalt transport protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; SPTR: A1VET6 Cobalamin (Vitamin B12) biosynthesis CbiM protein; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM" /codon_start=1 /transl_table=11 /product="cobalamin (vitamin B12) biosynthesis CbiM protein" /protein_id="YP_003807603.1" /db_xref="GI:302343074" /db_xref="GeneID:9494105" /translation="MHIADGVLSGPVLAAGAALSAGGTAWGLRKINVENLPRTGLLAA AFFVASLVHVPVGPSSVHLLLNGLVGIMLGWAAFPAILVALTLQAILFQFGGLTVLGV NTLNVALPAIFCHYLLARPVRGGSRLVCMLSGFSAGALSVMLTAAMTALSLYLSGDSF ISTAQALLVAHLPVAAIEGVFTALVVAYLRQVRSQALGSLLI" misc_feature complement(1819363..1819959) /locus_tag="Deba_1641" /note="Cobalt uptake substrate-specific transmembrane region; Region: CbiM; cl00397" /db_xref="CDD:185967" gene complement(1819996..1821498) /locus_tag="Deba_1642" /db_xref="GeneID:9494106" CDS complement(1819996..1821498) /locus_tag="Deba_1642" /note="COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423:IPR020003; KEGG: sfu:Sfum_2809 RND efflux system outer membrane lipoprotein; PFAM: outer membrane efflux protein; SPTR: A0LM35 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" /codon_start=1 /transl_table=11 /product="RND efflux system, outer membrane lipoprotein, NodT family" /protein_id="YP_003807604.1" /db_xref="GI:302343075" /db_xref="GeneID:9494106" /translation="MNKLAKPTPRGRRTLSAAALGLCLGLLAGCAVGPDFQPPQVETP AKWSAEQAAKPQSDQNVDLTAWWRAFDDPLLESLIQRAVAANPDLKLAEARVRQAMAQ RGVSLAALGPSLDASGSYSRGQSRTSSGGQYAGSNIGDQYVAGFDASWELDIFGGARR GLESADAQIRANVEDRRDVLVTLTAEVASNYLALRTTQQRIDVAQNNLAAQQRTAQIT IKRYQAGFANGLESAQAQAQVASTAAQIPALEATARQTMHNIAILLGQPPAALVAELS AAAPAPLTPPTPPLGLPADLLRRRPDIRRAEAEIHVATANIGVATAELFPKINIIGSS GYSASQAASWFTPANLIWSFGPSVSWNLFGSGRTKAQIEVQKMLEEQAVIAYRQTVLT AMREVEDALIVSGKEVQRRALLAQAVQANQKAVALSLELYTQGHGDFLSVLEAQRSLY SAQDSLAQSAGGAATDMVALYKALGGGWRENDADDGRQAKAKDEANAAAQ" misc_feature complement(1820068..1821405) /locus_tag="Deba_1642" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature complement(1820704..1821276) /locus_tag="Deba_1642" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(1820074..1820604) /locus_tag="Deba_1642" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(1821491..1822855) /locus_tag="Deba_1643" /db_xref="GeneID:9494107" CDS complement(1821491..1822855) /locus_tag="Deba_1643" /note="COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sfu:Sfum_2810 ABC transporter related; PFAM: protein of unknown function DUF214; SPTR: A0LM36 Macrolide export ATP-binding/permease protein macB; PFAM: Predicted permease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807605.1" /db_xref="GI:302343076" /db_xref="GeneID:9494107" /translation="MKLIGASRMALKALGRNPMRAMLTTLGIVIGVGAVIAMMEIGQG SSTALQKSIATMGANVILVRPGALQTHGVSGGAASGTTLTPKDAEAIKRECESVRLSA PVVRARTQVVYGNRNWAPSNMFGTTPEFLVIRAWGAMSEGEMFTDQDVAGARRVCVLG QTVARELFQGQSPVGKSVRIKDVAFKVVGVLGVKGANMMGMDQDDVLVAPWTTIKYRV AGSKLGSTNQSASSGDSDSTSGSYYPSEQTSLYPEQSSTQAQNTPITSRISDVDEIMV SAWSAAEINTAVDEISQLLRQRHRIRPGQDDDFTIRNMTELTDTLSSTATLMANLLLS VAMISLVVGGVGIMNIMLVSVTERTREIGLRMAVGARGSDILRQFLVEAVVLCLAGGA LGIVLGHGGSSLVRLVLKWPVETSIEAIVLAVAVSAAIGVIFGFYPAWRASRLDPIEA LRYE" misc_feature complement(1821494..1822801) /locus_tag="Deba_1643" /note="ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; Region: SalY; COG0577" /db_xref="CDD:30922" misc_feature complement(1821893..1822708) /locus_tag="Deba_1643" /note="MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704" /db_xref="CDD:193180" misc_feature complement(<1821719..1821859) /locus_tag="Deba_1643" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene complement(1822852..1823553) /locus_tag="Deba_1644" /db_xref="GeneID:9494108" CDS complement(1822852..1823553) /locus_tag="Deba_1644" /note="COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439:IPR017911:IPR017871; KEGG: sfu:Sfum_2810 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B9XKQ8 ABC transporter related-protein; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807606.1" /db_xref="GI:302343077" /db_xref="GeneID:9494108" /translation="MQLIELREITKTYNLGEVQVPVLKGVSLGVAQGELVALMGASGS GKSTLMNIMGCLDRPSAGQYLLDGRDVAGFSADQRARLRNRKIGFVFQNFSLLPRTSA LENVAMPLAYAADQPGDRQARKRAAEMLERVGLAQRMHHEPNQLSGGQQQRVAIARAL INRPELLLADEPTGNLDSKTSQEVLQMFAKLNEEDGITIILVTHDAEVARHAKRTIAI SDGVIVADGAEGEAS" misc_feature complement(1822885..1823547) /locus_tag="Deba_1644" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature complement(1822885..1823544) /locus_tag="Deba_1644" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature complement(1823413..1823436) /locus_tag="Deba_1644" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature complement(order(1822942..1822944,1823041..1823046, 1823278..1823280,1823410..1823418,1823422..1823427)) /locus_tag="Deba_1644" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature complement(1823278..1823289) /locus_tag="Deba_1644" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature complement(1823089..1823118) /locus_tag="Deba_1644" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature complement(1823041..1823058) /locus_tag="Deba_1644" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature complement(1823023..1823034) /locus_tag="Deba_1644" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature complement(1822936..1822956) /locus_tag="Deba_1644" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene complement(1823582..1824925) /locus_tag="Deba_1645" /db_xref="GeneID:9494109" CDS complement(1823582..1824925) /locus_tag="Deba_1645" /note="COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sfu:Sfum_2811 RND family efflux transporter MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: A0LM37 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_003807607.1" /db_xref="GI:302343078" /db_xref="GeneID:9494109" /translation="MKRLTKIIGATAGGVAALLGALWAFSPDDQAAAPFRTARVTKGD LVSTIEATGTLEPEDVIDVGAQVGGKIISFGVDANGKPIDYSSPVEAGMVLAKIDDAL YQASVTEAQAQVAASKASLQSARADLEQLKAKFRQAERDWQRARKLGPSEAISQASFD SYQSAFEAAKANVTVGEAAILQAKASLAQAEAALWRAQRNLDYCTITSPVKGVIIDRR VDIGQTVNSSMSAPSLFLIAKDLTKMELWVAVNEADIGSIHPGQKVSFTVDAFPGHDF SGQVGKLRLNASMTQNVVSYTVEVQTDNSDGKLLPYLTANVLFEKQRQDGALLAPNAA LRFTPADESISPDFREPQKQDQPGAHAGGQGKRGVIWVPDGAYARPLKVKVGVSDGTH TAISGPDLSEGMSVIVGGGSQGARTQSAAASQSDGAASPFTPKMPRRPGGGGPPH" misc_feature complement(1823696..1824817) /locus_tag="Deba_1645" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" misc_feature complement(<1824392..>1824745) /locus_tag="Deba_1645" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(1825312..1826001) /locus_tag="Deba_1646" /db_xref="GeneID:9494110" CDS complement(1825312..1826001) /locus_tag="Deba_1646" /note="COGs: COG5012 cobalamin binding protein; InterPro IPR006158:IPR003759; KEGG: dal:Dalk_4912 cobalamin B12-binding domain protein; PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; SPTR: B8FDF7 Cobalamin B12-binding domain protein; PFAM: B12 binding domain" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_003807608.1" /db_xref="GI:302343079" /db_xref="GeneID:9494110" /translation="MTEQAQNPAAGAKDLRLQRLVGQIAELNEDACLAELKRLLDEGV DPTELLTCFMEGMRRVGEMFETGRYFIAALIMAGEIMRAAMEALSPHLGQRATTGGGG KIIIGTIQGDIHDLGKNLFSLLLSCHQFEVVDLGVDVSPQTFLEKAIEHKPDLIGISC VLTTSVPSLKEAVELLRDQLPKPAPPVIIGGTCLDERMARFVGSDLWASDAANGLKIC QNALKWRTEAD" misc_feature complement(1825333..1826001) /locus_tag="Deba_1646" /note="Predicted cobalamin binding protein [General function prediction only]; Region: COG5012" /db_xref="CDD:34617" misc_feature complement(1825351..1825944) /locus_tag="Deba_1646" /note="B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase...; Region: B12-binding_like; cl00293" /db_xref="CDD:193754" misc_feature complement(order(1825360..1825362,1825369..1825371, 1825378..1825380,1825426..1825428,1825513..1825521, 1825525..1825533)) /locus_tag="Deba_1646" /note="B12 binding site [chemical binding]; other site" /db_xref="CDD:30204" gene complement(1825994..1826806) /locus_tag="Deba_1647" /db_xref="GeneID:9494111" CDS complement(1825994..1826806) /locus_tag="Deba_1647" /note="COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: dal:Dalk_4913 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; SPTR: B8FDF8 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_003807609.1" /db_xref="GI:302343080" /db_xref="GeneID:9494111" /translation="MVMPKNAARNNQAYLLNKSGAQAIAEHKIDKSSSLPAYAQMANI LRQKISTGAYAPGDRLPAESALAKTFGVSAMTARQAVTVLEEEGLVRRVQGSGTFVRK IGVAASYFGLDALGQVLADEANLAVRIVNASVKRTPGLEKTLLGLKDSDPVILVERVI MHRDEPFTLHVSFTSFDPASPTVEAMLDTVVLTGLIFQEGYSNFKKGELRLIPTILGP REARLLRMEPGRSVFKLEHLFHDFDDRPAAFGWFIVSHEKMPLVSRVGVWHD" misc_feature complement(1826015..1826719) /locus_tag="Deba_1647" /note="Transcriptional regulators [Transcription]; Region: PhnF; COG2188" /db_xref="CDD:32371" misc_feature complement(1826504..1826701) /locus_tag="Deba_1647" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(1826513..1826524,1826528..1826533, 1826561..1826563,1826570..1826575,1826579..1826593, 1826615..1826620,1826624..1826626,1826693..1826695, 1826699..1826701)) /locus_tag="Deba_1647" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(1826033..1826428) /locus_tag="Deba_1647" /note="UTRA domain; Region: UTRA; cl06649" /db_xref="CDD:195338" gene 1827084..1827734 /locus_tag="Deba_1648" /db_xref="GeneID:9494112" CDS 1827084..1827734 /locus_tag="Deba_1648" /note="InterPro IPR012437; KEGG: dal:Dalk_4914 protein of unknown function DUF1638; PFAM: Protein of unknown function DUF1638; SPTR: B8FDF9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1638)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807610.1" /db_xref="GI:302343081" /db_xref="GeneID:9494112" /translation="MTDDRLKIVTCNALAHVMQALAGEGASCTVMDIALHLKPERLRE KLQETVAELEEPGLTIAFGYGLCGRGLEGVCSAKSTLVLPRVDDCVGALLGSRARHRR ILADRAGCYFLEPRWLDTELNIFEQMKKGLDRIPPQRRKGLIKAALHHYDALVLLAGH GDEGQARQRCQALAEEYDLELMRRQTDLGLLTRLLRGPWSEDEFVIAPPGSPIPLF" misc_feature 1827174..1827626 /locus_tag="Deba_1648" /note="Protein of unknown function (DUF1638); Region: DUF1638; pfam07796" /db_xref="CDD:149066" gene 1827762..1828571 /locus_tag="Deba_1649" /db_xref="GeneID:9494113" CDS 1827762..1828571 /locus_tag="Deba_1649" /note="COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR011005:IPR000489; KEGG: dal:Dalk_4910 methionine synthase; PFAM: dihydropteroate synthase DHPS; SPTR: B8FDF5 Methionine synthase; PFAM: Pterin binding enzyme" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase DHPS" /protein_id="YP_003807611.1" /db_xref="GI:302343082" /db_xref="GeneID:9494113" /translation="MIIIGEKINGTRKAVAQAIRERDAAFIKELAQSQAQAGSHYLDV NAGTSPEREPDDMAWLVETIQEACELPLCLDSANPKALKAGLALVNKTPIINSVSGEQ PRIDGVLPLALEHKTGLILLALDDKVGIPATSEGRLEIVHRLVGLAKDGGLAEDQLHV DPLVTAISTGTNNGLITFDAIAKTRQAYPAAHITCGLSNISFGMPLRPLINQTFLGMC IMHGLDSAIVDPNDHQLLGVMLAAEMLVGKDKFCQNFSRAYRSGRIGPKTN" misc_feature 1827762..1828457 /locus_tag="Deba_1649" /note="Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a...; Region: Pterin_binding; cl00219" /db_xref="CDD:197403" misc_feature order(1827786..1827788,1827984..1827986,1828047..1828049, 1828053..1828055,1828125..1828127,1828242..1828244, 1828347..1828349,1828359..1828361,1828440..1828442, 1828446..1828448) /locus_tag="Deba_1649" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29544" misc_feature order(1828275..1828277,1828287..1828292,1828398..1828400, 1828410..1828412,1828422..1828424) /locus_tag="Deba_1649" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29544" misc_feature 1828353..1828361 /locus_tag="Deba_1649" /note="inhibitor binding site; inhibition site" /db_xref="CDD:29544" gene 1828592..1829233 /locus_tag="Deba_1650" /db_xref="GeneID:9494114" CDS 1828592..1829233 /locus_tag="Deba_1650" /note="COGs: COG5012 cobalamin binding protein; InterPro IPR006158:IPR003759; KEGG: dal:Dalk_4909 methionine synthase; PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; SPTR: B8FDF4 Methionine synthase; PFAM: B12 binding domain" /codon_start=1 /transl_table=11 /product="cobalamin B12-binding domain protein" /protein_id="YP_003807612.1" /db_xref="GI:302343083" /db_xref="GeneID:9494114" /translation="MADLKELVSAVVEMREDEAMALTKKLLADGTPPLAVFDAYQAAL EEIGKRFEQQLYFIPELIMSGEMMKAASEIIKPLLADQSGGQGKQRLGKVVIATVEGD IHDIGKNIVAMMMDLGGLEVRDLGVDVPADRIIAEAKDFGADIIGLSGLLTLAFDPMK QVVEKLQAEGLRDKIKVIIGGGQMDEQVCKYVGADAFVTDAVAGVNYCKGWLA" misc_feature 1828601..1829230 /locus_tag="Deba_1650" /note="Predicted cobalamin binding protein [General function prediction only]; Region: COG5012" /db_xref="CDD:34617" misc_feature 1828610..1829221 /locus_tag="Deba_1650" /note="B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase...; Region: B12-binding_like; cl00293" /db_xref="CDD:193754" misc_feature order(1829030..1829038,1829042..1829050,1829135..1829137, 1829183..1829185,1829192..1829194,1829201..1829203) /locus_tag="Deba_1650" /note="B12 binding site [chemical binding]; other site" /db_xref="CDD:30204" gene 1829314..1830648 /locus_tag="Deba_1651" /db_xref="GeneID:9494115" CDS 1829314..1830648 /locus_tag="Deba_1651" /note="COGs: COG0407 uroporphyrinogen-III decarboxylase; KEGG: dal:Dalk_4908 hypothetical protein; SPTR: B8FDF3 Putative uncharacterized protein; PFAM: uroporphyrinogen decarboxylase (URO-D)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807613.1" /db_xref="GI:302343084" /db_xref="GeneID:9494115" /translation="MTDGWDKMTPAQRQDAFLAQWASGEGVPFVDEKAKAGYQARAKL MCDAFQLVKSPQRVPIVPLTTFAPTMLAGYGGKQAMYDPHAVGKAFLDFALKYDADAA GAAPMIMYGPTLEALGYQLYKWPGHGVPEHLSYQFVEKEYMKADEYDHLITDPTDFWL RSWIPKTHAALAALADMAPIYGTMELPMSSSWLISLGTPPAQEALKALMEASRLCFEW INALGPYLGQIMGHGYPFYAGGATKAPFDVLSDSFRGTTPLMMDLYRRPQKVLEAVER LVRPMITTGVSGAVANNNPMVFIPLHKGADGFMSDEQFQKYYWPTLKAVMYGLAEHGC VPCCFVEGGYNQRLEYLAETSDIRCLYLFDRTDMAKARQILGGKVCIGGGFSVSLLLT GTPEQVREETKKLLDVAAGDGGYMLSIGCALDEAKDATMKAFVDAGMEFGKY" misc_feature 1829422..1830606 /locus_tag="Deba_1651" /note="The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine...; Region: URO-D_CIMS_like; cl00464" /db_xref="CDD:193829" gene 1830841..1831749 /locus_tag="Deba_1652" /db_xref="GeneID:9494116" CDS 1830841..1831749 /locus_tag="Deba_1652" /note="COGs: COG4313 Protein involved in meta-pathway of phenol degradation; KEGG: sse:Ssed_1728 hypothetical protein; SPTR: A8FU16 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807614.1" /db_xref="GI:302343085" /db_xref="GeneID:9494116" /translation="MINAIKKMALGVAAAALVLAASGAAMAFGHYTPGALGLGAATLP PPGFHYTIYNIFYNADTMIDDNGNESNVGLDLNVFASAHQFTYMTDYKFLGAEFGFDM IVPLVSTNIEIRAAGVDDSQFGIGDLYFEPFVLAWRKPQWDVAFALGFYAPTADSGGS ASPGLGYWSFMETLGATYYFDQARTWSVSLLTRWLQNTESRDSDVTQGANVVAEYGAG KTISLSRDLLFQFGVSGYTNLQLTDNSGTTNDDVRARSNAVGPEIHFTLLKPLVLQAY LRYLFEYGTEATSEGQTLCLTLIGSF" misc_feature 1830937..1831746 /locus_tag="Deba_1652" /note="Protein involved in meta-pathway of phenol degradation [Energy production and conversion]; Region: COG4313" /db_xref="CDD:34035" gene 1831892..1833760 /locus_tag="Deba_1653" /db_xref="GeneID:9494117" CDS 1831892..1833760 /locus_tag="Deba_1653" /note="COGs: COG3894 Uncharacterized metal-binding protein; InterPro IPR001041:IPR012675; KEGG: mta:Moth_2112 ferredoxin; PFAM: ferredoxin; SPTR: Q2RGN5 Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_003807615.1" /db_xref="GI:302343086" /db_xref="GeneID:9494117" /translation="MPAQTSATVHVLPDGPTIIAPLGAKLSDVLVEAGLSLAMDCGGK GLCGRCLVWVEGAVSAVEPEEAKQIDPALLARGHRLACQARVAGELNVRLPEPERLDA KAWRIEGDEDGPPAMTEPALNGIDLHLPAPSLQDPRSDQRRLEDALAAAGRPEARLDD PLAAGQLSRLAREAGWRLRAVLRGRRVVGVGPWGQPALGLAVDLGSTKLAAYLCDMEN GAILAAKGMLNPQASFGADVVTRLQRAIAKPDDGRRLTAMIRQAIDDLAGEMTRQAGV ERQRVMAMSLVGNSVMTHLFLGLPLAQLAAPPFVACLDQPLDLPAERLGLRLAPGALV HLPPLVGGFVGSDNVAMIMGAGLDGAERCRLGLDIGTNTEVTLSVPGRDKPLLIASAP SGPTFEGAHLSAGMRAMAGAIHRVGVEGGRLAVQTIDGSPPAGVCGSGVIDAVAELNR HGLINKLGHLDRGHPLVRVDGTGARFVLAGADQSAHGAEVAISQADIGQVQLAKAAIR AAGQTLLALAGLSESDLEEVVLAGSFGSNFGVENAKAMGLIPDVAGAVYRQVGNAAGV GARWALLDMAARRRALAIPAKAQYVELTGESRFNGLFARNLAFPALADRSVQAQAL" misc_feature 1831913..1832170 /locus_tag="Deba_1653" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature 1831952..1833721 /locus_tag="Deba_1653" /note="Uncharacterized metal-binding protein [General function prediction only]; Region: COG3894" /db_xref="CDD:33682" misc_feature order(1832000..1832005,1832012..1832014,1832024..1832026, 1832030..1832041,1832132..1832137) /locus_tag="Deba_1653" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(1832012..1832014,1832030..1832032,1832039..1832041, 1832135..1832137) /locus_tag="Deba_1653" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" gene complement(1833737..1835068) /locus_tag="Deba_1654" /db_xref="GeneID:9494118" CDS complement(1833737..1835068) /locus_tag="Deba_1654" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR011006:IPR009057:IPR 002078:IPR002197:IPR020441; KEGG: dba:Dbac_0628 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003807616.1" /db_xref="GI:302343087" /db_xref="GeneID:9494118" /translation="MSKLVLIVDDEAGYRQLYAQALSRAGYETIAAADGLQALQMIEA KRPELVLCDVRLPGLDGLELLRRGRRERPDLPFLLITAHAEVGQAVRALKLGAVDYLA KPVDSDQLLAAVAEVVGPAEQTADDDLPPQALHGLVAQAPAWRAALAQALKAAASTAS VLITGESGAGKEVLARLIHRHSPRAAKPLVAVNCAAIPAGLLASELFGHERGSFTGAS ARRLGRFREADGGTLFLDEIGDMPLELQPALLRAIETGRVTPVGGDRELASDFRLIAA TNHDIQAEAAAGRFRQDLYYRLNVVAIEAPPLRQRPEDILPLARRFLAGGDKRLSRAA AQALQAHHWPGNVRELANAMERAGLLSQTDVILPEHLPPAVRQGAASASPGPAPPATA TPPAVKTLEQSEVEAIRLALAQTGGNRTKAADILGITRRGLIYKLKRLGLD" misc_feature complement(1833740..1835068) /locus_tag="Deba_1654" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature complement(1834715..1835053) /locus_tag="Deba_1654" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1834757..1834762,1834769..1834771, 1834826..1834828,1834886..1834888,1834910..1834912, 1835039..1835044)) /locus_tag="Deba_1654" /note="active site" /db_xref="CDD:29071" misc_feature complement(1834910..1834912) /locus_tag="Deba_1654" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1834886..1834894,1834898..1834903)) /locus_tag="Deba_1654" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1834754..1834762) /locus_tag="Deba_1654" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1834166..1834591) /locus_tag="Deba_1654" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(1834553..1834576) /locus_tag="Deba_1654" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(1834235..1834237,1834361..1834363, 1834550..1834573)) /locus_tag="Deba_1654" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(1834358..1834375) /locus_tag="Deba_1654" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(1834178..1834180) /locus_tag="Deba_1654" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(1833749..1833874) /locus_tag="Deba_1654" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(1835065..1836333) /locus_tag="Deba_1655" /db_xref="GeneID:9494119" CDS complement(1835065..1836333) /locus_tag="Deba_1655" /note="COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR009082:IPR004358:IPR 005467:IPR000629; KEGG: dba:Dbac_0629 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C7LX79 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_003807617.1" /db_xref="GI:302343088" /db_xref="GeneID:9494119" /translation="MKTPAILTTYRTPIIVTILMVSALFLWAWHRWSDINQTFDRLAH QRVMGLVDAMDGAFAALAEYKPENRTQANNLLKSFISASPISFVELRQGDEAIFSAGG GPRPQNLPTPEGDMTVDGRLLIWRRLHLPGHDPAGQTLLVGFRPPPERPGHPRAITAL FITVTIALCFIVASLAAWVMAIRGALLAEQLKAERARREHLEDLGLAAAGLAHETKNP LGIILGLAQQIADQPDQPAQSRQMLIDIIDEADKASARLGGFMTFASRRQPNIAPVDL AALAEKVTQLIKPDLEAAGVVTRIDCPPWPILADEEMLRQVLVNLLLNSLRASRPGDE ISVALVRQGETATLMVKDRGAGVPSDLLPKIFKPYVSGDASGHGLGLAIVKRFVEEHG WSVAMESQPGQGATVTIQGVKPAPGRGEGQ" misc_feature complement(1835107..>1835961) /locus_tag="Deba_1655" /note="sensor protein ZraS; Provisional; Region: PRK10364" /db_xref="CDD:182411" misc_feature complement(1835107..1835394) /locus_tag="Deba_1655" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1835113..1835115,1835119..1835124, 1835137..1835139,1835143..1835145,1835191..1835202, 1835263..1835268,1835272..1835274,1835278..1835280, 1835284..1835286,1835353..1835355,1835362..1835364, 1835374..1835376)) /locus_tag="Deba_1655" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1835362..1835364) /locus_tag="Deba_1655" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1835194..1835196,1835200..1835202, 1835266..1835268,1835272..1835274)) /locus_tag="Deba_1655" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(1836412..1836738) /locus_tag="Deba_1656" /db_xref="GeneID:9494120" CDS complement(1836412..1836738) /locus_tag="Deba_1656" /note="KEGG: dma:DMR_02010 hypothetical protein; SPTR: C4XGB2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807618.1" /db_xref="GI:302343089" /db_xref="GeneID:9494120" /translation="MKKIVALVMCLSLLAIFSSAAMAQKQNVDDVDFGALTCQDFIMG LAKSDEETAGLVLLWLDGYLSGVSGDTVIRWQTIDDFSNNIVDACGNQPDRNLLEVAK EIGISE" misc_feature complement(1836433..1836738) /locus_tag="Deba_1656" /note="hns-dependent expression protein A (HdeA); Region: HdeA; cl05752" /db_xref="CDD:186666" gene 1837022..1839247 /locus_tag="Deba_1657" /db_xref="GeneID:9494121" CDS 1837022..1839247 /locus_tag="Deba_1657" /note="COGs: COG1203 helicase; InterProIPR006675:IPR006474:IPR014001:IPR006674:IPR 014021; KEGG: dvm:DvMF_1971 CRISPR-associated helicase Cas3; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: DEAD-like helicase; SPTR: B8DQ50 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; metal dependent phophohydrolase; PFAM: HD domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_003807619.1" /db_xref="GI:302343090" /db_xref="GeneID:9494121" /translation="MAGEFYARPKDGAPEDQWQTIEEHLTNVAEEAGRMALAFGAGPW GRAAGLLHDLGKYSEAFQRRLRGGPKVDHSTAGARRARALFGPGWGKLLAYAIAGHHA GLANGNDGSPSDLVSRLGESRRKRQIEPYERFDPRLLADLSLVAPPLKRDDERSGFQA AFFARMIFSCLVDADRLDSERFTSPDKAAWRDGWPDVDQLWTRLEAFLAGLRAKAAAS PLNKRRNEILDACLAAADQPPGLFSLTVPTGGGKTYSSLAFALRHAHGHGLRRVIYVI PYTSIIDQNASVMRDALGDDAVLEHHSSLPVNDDQKDDGAAFRRGDLAAENWDAPLVI TTNVQFFESLFANKPGKCRKLHNIAGSVIILDEAQMLPRDQLRPCLAALRELTLNYGC SVVLCTATQPAFGDAETFDSLAMRPRELAPDPERLYDEFRRVRVVLEGMLSADELAGR LAAHDQVLCVVNTRRHARDVFRRLAAGRPTGQVYHLSTLMHATHRRAKLEAIRADLAA GRPCLAVSTQLVEAGVDVDFPHVYRAMAGLDSLAQAAGRCNREGRLAELGLLHVFDCD KQEYKPPHSLIAPMEEGRGVLRRCAAGDDLLSLANIGDYFAGLYHRHKDRLDVGDILA ELAPGAKNADFPFATVADLFKYFDSPGQPLLVCDENLRRRIVDGLRHAPNPGLFLRRA QPWLVQIYDHEIGQLERKGAVSRVVEGGLAVLEEPALYRDDVGLDIDLDAPGDPNKTY Y" misc_feature 1837058..1837576 /locus_tag="Deba_1657" /note="CRISPR/Cas system-associated protein Cas3''; Region: Cas3''_I; cd09641" /db_xref="CDD:193608" misc_feature 1837742..1838680 /locus_tag="Deba_1657" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl14882" /db_xref="CDD:197446" gene 1839295..1839954 /locus_tag="Deba_1658" /db_xref="GeneID:9494122" CDS 1839295..1839954 /locus_tag="Deba_1658" /note="InterPro IPR013422:IPR010155; KEGG: mfa:Mfla_0602 CRISPR-associated Cas5d family protein; PFAM: CRISPR-associated protein CT1134; SPTR: C0GMN3 CRISPR-associated protein Cas5 family; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, Dvulg subtype; CRISPR-associated protein Cas5, N-terminal domain" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas5 family" /protein_id="YP_003807620.1" /db_xref="GI:302343091" /db_xref="GeneID:9494122" /translation="MSKGVALRVGGDYACFTRPEMKVERVSYEVMTPSAARGILEAIH WKPSIRWIVERIHVLRDIRFTNLRRNELGCKMSVSGAAIKRAVSEGEAMGVFIEEERQ QRAAAILRDVEYVIEARFEFTSEADNNEGKHLDIFNRRLEKGQCFHRPYLGCREFAAW FAPLDGDIPPSPLRGEKDLGLMLWDIDFGGHEPMPRFFRAVLNDGVLAVPPPEAMEGR P" misc_feature 1839304..1839924 /locus_tag="Deba_1658" /note="CRISPR-associated protein (Cas_Cas5); Region: Cas_Cas5d; pfam09704" /db_xref="CDD:192338" misc_feature 1839307..1839924 /locus_tag="Deba_1658" /note="CRISPR/Cas system-associated RAMP superfamily protein Cas5; Region: Cas5_I-C; cd09752" /db_xref="CDD:187534" gene 1839951..1841747 /locus_tag="Deba_1659" /db_xref="GeneID:9494123" CDS 1839951..1841747 /locus_tag="Deba_1659" /note="InterPro IPR010144; KEGG: dma:DMR_14370 hypothetical protein; PFAM: CRISPR-associated protein CT1133; SPTR: C4XNF3 Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein (Cas_Csd1); TIGRFAM: CRISPR-associated protein, Csd1 family" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein, Csd1 family" /protein_id="YP_003807621.1" /db_xref="GI:302343092" /db_xref="GeneID:9494123" /translation="MILQALRKYYERLTRDPRRDVPLPGFGLAKISFALVLSADGELV DVHDLREQKGKKLAPRPLQTPQAVKRTVGVAANFLWDNTGYVLGVDGKGKLERTAQTH QVFKALCRQLLAELDDAGARAVLVFLERWRPTPEPALPGDALWKDVCDQNLVFVLDGQ RGYIHERPAIKEAWLAHCLKNPDALEGQCLVSGEMGPLARLHPAIKGVWGAQSSGANL VSFNLDAFASYGKSQSYNAPVGEAATFAYTTALNNLLAEGSKQRIQIGDASTVFWSEK ASKLEDTLGSLFGASPEKADDDDHEAEDSSLTDNVGLFLKAARDGVPDDAPEARNPFY ILGLSPNASRIAVRFWHASSVGQMERRLGEYLDDITIVRQYDNQPEYPPLWLLLRQTA VQGKAENIPAQLAGEVARAVFEGSALPSSLLAALIGRVRADGDMGYLRAALLKAYFCR RRRLDKSHANDSPIMEVKVSLDIENKTPAYLLGRLFAVLEKLQADAIPGVNSTIRDRY MSSASSAPQATFPQLLRLAQAHIKKSDWGWKYDERIKEILNDIDAFPKTLSMEQQGYF FLGYYHQVVDLFAKKSKESASQDQAGQRDEEE" misc_feature 1839957..1841705 /locus_tag="Deba_1659" /note="CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG; Region: cas_Csd1; TIGR01863" /db_xref="CDD:188176" misc_feature 1839957..1841687 /locus_tag="Deba_1659" /note="CRISPR/Cas system-associated protein Cas8c; Region: Cas8c_I-C; cd09757" /db_xref="CDD:187887" gene 1841749..1842627 /locus_tag="Deba_1660" /db_xref="GeneID:9494124" CDS 1841749..1842627 /locus_tag="Deba_1660" /note="COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR006482:IPR013418; KEGG: cvi:CV_1227 hypothetical protein; PFAM: CRISPR-associated protein TM1801; SPTR: C0GMN1 CRISPR-associated protein, Csd2 family; TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein, Csd2 family" /protein_id="YP_003807622.1" /db_xref="GI:302343093" /db_xref="GeneID:9494124" /translation="MSQVLENRYEFVYLFDVENGNPNGDPDAGNMPRLDPETNHGLVT DVCLKRKVRNYVQLAKEEAAGFKIYVKEKALLNQLHELAYVNNPDIERPDKKKLPKKQ EEAQKITRWMCDNFYDIRTFGAVMSTEINAGQVRGPVQFNFSRSVEPILPMEISITRM AVTNEADLQKERTMGRKHIVPYALYRGEGYVSAPLAQQTGFGPDDLELLWEALCNMFE HDRSAARGKMSARRLYVFKHDSRLGSAPAQKLFDLVRVARKDAEAKAPARSFGDYQVS VDRAGLPQGVTVEEML" misc_feature 1841770..1842621 /locus_tag="Deba_1660" /note="CRISPR/Cas system-associated RAMP superfamily protein Cas7; Region: Cas7_I-C; cl01465" /db_xref="CDD:194141" gene 1842632..1843273 /locus_tag="Deba_1661" /db_xref="GeneID:9494125" CDS 1842632..1843273 /locus_tag="Deba_1661" /note="COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: sat:SYN_02474 exonuclease N; PFAM: CRISPR-associated protein Cas4; SPTR: Q2LX05 RecB family exonuclease N; TIGRFAM: CRISPR-associated protein Cas4; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas4" /protein_id="YP_003807623.1" /db_xref="GI:302343094" /db_xref="GeneID:9494125" /translation="MWDEADLVPLSALQHWIYCPRQCGLIYLERVWAENRFTAEGRLL HEKAHEAGYETRGQVRIARGLSLRSEAHGLVGVADVVEFHRADGHWLAFPVEYKRGRS KDHAADRAQLCAQALCLEEMLGQHIAAGALFYGQSRRRQDVDFDAALRGQTIATIAQV RAMLRLGRTPPPPNDKRCPQCSLRQACLPAICGTGLGSAAWLARKISRALEEP" misc_feature 1842653..1843195 /locus_tag="Deba_1661" /note="CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cd09637" /db_xref="CDD:187768" gene 1843270..1844304 /locus_tag="Deba_1662" /db_xref="GeneID:9494126" CDS 1843270..1844304 /locus_tag="Deba_1662" /note="COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019856:IPR002729; KEGG: sat:SYN_02473 cytoplasmic protein; PFAM: protein of unknown function DUF48; SPTR: Q2LX06 Hypothetical cytosolic protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated protein Cas1, DVULG subtype" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas1" /protein_id="YP_003807624.1" /db_xref="GI:302343095" /db_xref="GeneID:9494126" /translation="MKHLLNTLFLTRDDLQLVKDGQSLLVKQGNEVLLRKPVHMLGGV ISLGRSYITPQAMAFCAENDVALSLLSPNGRFLAQVRGPVSGNVLLRRAQFRLADDDK AANNIAQAVVAAKLVNCRGLLRRAARDQTLEADAEALALAADRLAQVLRRLEGAQSLE ETRGLEGEGAAAYFGVFGRLISAQGDGFAFNGRNRRPPRDAVNALLSFAYTLLAHDIS GACQAVGLDPQVGFLHRDRPGRPSLALDLMEEMRPMMVDRLVLNLINLRQVRAKGFAI EPAGGVRMDDDTRKGLLVAYQERKQKEIHHPVLDEKIPLGLLPHVQAMLLARHIRGDL PGYPAHFHKF" misc_feature 1843279..1844283 /locus_tag="Deba_1662" /note="CRISPR/Cas system-associated protein Cas1; Region: Cas1_I-II-III; cl00656" /db_xref="CDD:193901" gene 1844314..1844604 /locus_tag="Deba_1663" /db_xref="GeneID:9494127" CDS 1844314..1844604 /locus_tag="Deba_1663" /note="COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR003799; KEGG: dvu:DVUA0135 CRISPR-associated Cas2 family protein; PFAM: protein of unknown function DUF196; SPTR: Q72WF4 CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas2" /protein_id="YP_003807625.1" /db_xref="GI:302343096" /db_xref="GeneID:9494127" /translation="MMILVCYDVETVSPGGQRRLRRVARHCMNYGERVQNSVFECLLD PAQWVRFKAKLEGEADLQRDSLRYYFLGANWRRRVEHVGAKPVLDPDAPLVL" misc_feature 1844320..1844571 /locus_tag="Deba_1663" /note="CRISPR/Cas system-associated protein Cas2; Region: Cas2_I_II_III; cd09725" /db_xref="CDD:187856" repeat_region 1844781..1865930 /note="CRISPR" gene 1866284..1868125 /locus_tag="Deba_1664" /db_xref="GeneID:9494128" CDS 1866284..1868125 /locus_tag="Deba_1664" /note="COGs: COG3240 phospholipase/lecithinase/hemolysin; InterPro IPR006315:IPR005546:IPR017186; KEGG: dps:DP2994 lipase 1; PFAM: Autotransporter beta- domain protein; SPTR: Q6AIV7 Related to lipase 1; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain" /codon_start=1 /transl_table=11 /product="outer membrane autotransporter barrel domain protein" /protein_id="YP_003807626.1" /db_xref="GI:302343097" /db_xref="GeneID:9494128" /translation="MSKRFALAIVLLAFIALCTSGAAGAAGFSQFVGLGDSTLDTGYL RYHTSGDAELDSAIADAVALGANGGWAGNGVMNTTILAGKFGLDAATIGDGGTNYAVG GAYTTMARLGLVPSTQQVANYLASVGGVANPSALYIVSSGNNDLIYASQNVVSPNFLH EQAIAWAAAVARLQAAGARVILAPNSYYCCTLAGLGGVIPSDKAAAYAQATLYGVDIW RSMTAAGVRYIPADQKSLIEYVIKNPTLFGFTATSVLSSSAPASVPAVLAILTPLQQQ TFLFIDGHHLTTAGQTIVADYNYNLLAAPSQISLITEGAVQGGLARTATIQRQIDLSW RHRGPGGVNVWTSVGAYRQKIKNASGFPTASGVPFSGSAGVDYQTTRGLIMGAALTAG SQRQDFSTGGHFDQTDGALSLYAAYKIGWLWGNAVASYGQFSDKITRQAPLGILIDHN DSDTDGHSQALALRAGGDIKIGPFTTGPVAGVVMQKVWLDSFRETGGTGVTALWFDSI TRDSLVSQLGWRLSLELGDWQPFAEANWSHEWAERDRSVTAALTTVEAPSYSMAAVPV ASDWATMLLGASYRLNSRVMLQGSASAVAFNHEVTSYGGELSVNFNF" misc_feature 1866365..1867189 /locus_tag="Deba_1664" /note="SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely...; Region: SGNH_hydrolase; cl01053" /db_xref="CDD:194020" misc_feature order(1866392..1866394,1866590..1866592,1866713..1866715, 1867127..1867129,1867136..1867138) /locus_tag="Deba_1664" /note="active site" /db_xref="CDD:58496" misc_feature order(1866392..1866394,1867127..1867129,1867136..1867138) /locus_tag="Deba_1664" /note="catalytic triad [active]" /db_xref="CDD:58496" misc_feature order(1866392..1866394,1866590..1866592,1866713..1866715) /locus_tag="Deba_1664" /note="oxyanion hole [active]" /db_xref="CDD:58496" misc_feature 1867403..1868122 /locus_tag="Deba_1664" /note="Autotransporter beta-domain; Region: Autotransporter; cl02365" /db_xref="CDD:194296" gene complement(1868902..1869672) /locus_tag="Deba_1665" /db_xref="GeneID:9494129" CDS complement(1868902..1869672) /locus_tag="Deba_1665" /note="COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003593:IPR003439:IPR017871; KEGG: dma:DMR_44920 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C4XRR7 Putative ABC transporter ATP-binding protein; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807627.1" /db_xref="GI:302343098" /db_xref="GeneID:9494129" /translation="MPEPLLRAQGLTKAYAASGGGARRAVDGVSLTILPGQAVGVAGP SGSGKSTLGRLILGLEPLDVGQLRLAGVEYGRGKGDRPRLARLVQMIWQDPQVHLNPR MSASQAVAEPLWAIAGRAKPRAQAQARDLLARVGLEPGLAERRPHQLSGGQCQRVAIA RALALGPRLLICDEAVASLDLPGQLQIVDLLDELVVGGLSVLFISHDLGILARLCAEV HVMDRGAVIESGPVARVLDTPRRELTKRLLAGEPMPRR" misc_feature complement(1868926..1869663) /locus_tag="Deba_1665" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature complement(1868983..1869660) /locus_tag="Deba_1665" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(1869523..1869546) /locus_tag="Deba_1665" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(1869055..1869057,1869151..1869156, 1869394..1869396,1869520..1869528,1869532..1869537)) /locus_tag="Deba_1665" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(1869394..1869405) /locus_tag="Deba_1665" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(1869199..1869228) /locus_tag="Deba_1665" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(1869151..1869168) /locus_tag="Deba_1665" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(1869133..1869144) /locus_tag="Deba_1665" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(1869049..1869069) /locus_tag="Deba_1665" /note="H-loop/switch region; other site" /db_xref="CDD:73016" gene complement(1869665..1870444) /locus_tag="Deba_1666" /db_xref="GeneID:9494130" CDS complement(1869665..1870444) /locus_tag="Deba_1666" /note="COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: gem:GM21_1778 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C6E6J1 Oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807628.1" /db_xref="GI:302343099" /db_xref="GeneID:9494130" /translation="MGVTVRGLCVEGPGGAPLVRGVDLRVEPTEILGLVGPSGAGKSL VAAAMAGLIPPPALARAGRMDFDGRTLNMTDPRQWRGLRGRGVFLLMQSSAAALDPTM TIGRQVAEALSANGVMAPKQARDATGGLLAQVGLEPGLQRAYPHQLSGGMRQRVQLAM ALGLRPRLLIADEPTTGLDPIMQAEILRLLRLMNARHGSAMMLISHDWRVIAAMAARV AVMERGAIVESGPTAQLMASPRHPTTRLAMAALRELEAARA" misc_feature complement(1869713..1870444) /locus_tag="Deba_1666" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124" /db_xref="CDD:31321" misc_feature complement(1869755..1870438) /locus_tag="Deba_1666" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(1870316..1870339) /locus_tag="Deba_1666" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(1869827..1869829,1869926..1869931, 1870169..1870171,1870313..1870321,1870325..1870330)) /locus_tag="Deba_1666" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(1870169..1870180) /locus_tag="Deba_1666" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(1869974..1870003) /locus_tag="Deba_1666" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(1869926..1869943) /locus_tag="Deba_1666" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(1869908..1869919) /locus_tag="Deba_1666" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(1869821..1869841) /locus_tag="Deba_1666" /note="H-loop/switch region; other site" /db_xref="CDD:73016" gene complement(1870447..1871247) /locus_tag="Deba_1667" /db_xref="GeneID:9494131" CDS complement(1870447..1871247) /locus_tag="Deba_1667" /note="COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dau:Daud_0387 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1I1X8 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_003807629.1" /db_xref="GI:302343100" /db_xref="GeneID:9494131" /translation="MIRLGGAIVALLMLVAVAAPWLAPHDPNAVDLGQRLRPPSLERP LGADRLGRDQLSRIIYGARNSLGAAMLASGLALGLGLGLGLLAAMLGGRWDGFLMRLV DVGLAFPGLVLALALAGAMGPSLLSVCLGAAAAGWAWWARFTRGLAVAALARRFVVAG QALGLGRWAIARRYVLPEIAAPILVAASLKTGWMIVAISGLGYLGLGAQPPTPEWGAM LHEARANLARAPWLMLAPGLAITATVLGCNLLAEGLRDRLQVRQDRDF" misc_feature complement(1870489..1871178) /locus_tag="Deba_1667" /note="nickel ABC transporter, permease subunit NikC; Region: nickel_nikC; TIGR02790" /db_xref="CDD:131837" misc_feature complement(1870546..>1870767) /locus_tag="Deba_1667" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1870714..1870716,1870726..1870731, 1870747..1870767)) /locus_tag="Deba_1667" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" misc_feature complement(order(1870564..1870566,1870594..1870596, 1870603..1870605,1870642..1870644)) /locus_tag="Deba_1667" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" gene complement(1871244..1872227) /locus_tag="Deba_1668" /db_xref="GeneID:9494132" CDS complement(1871244..1872227) /locus_tag="Deba_1668" /note="COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dau:Daud_0386 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1I1X7 Binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: Binding-protein-dependent transport system inner membrane component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_003807630.1" /db_xref="GI:302343101" /db_xref="GeneID:9494132" /translation="MSGPWRVLSGLWGQAWRLALTMLGVSVLTFGLTWLAPGDPAEIL LRDRYEAPTAQKLAQVRAEMGLDDALALQYLRWLGRAARLDFGLSYVSGRPVSQELGP RALATAELALTAFGLVVALSLAGGLLGGLFHGRLIDRLGRLAAILAMSAPNYWLGMLL IWLFAVEAGWLPVMGRGGPEHLILPALTLALAVAAMQARVLRASVIETKSRDYVRLAM AKGLGRWQTFTRHVVKNSLLPALTMWGLCLGHLLGGSVIVESVFSWPGLGQLAAQAIL ARDMPVLQAAVMLMALFYVVANLGVDALYRLVDPRLRQAAPAGESCPEPQP" misc_feature complement(1871289..1872179) /locus_tag="Deba_1668" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" misc_feature complement(1871439..1871834) /locus_tag="Deba_1668" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1871448..1871453,1871460..1871471, 1871490..1871492,1871499..1871504,1871544..1871546, 1871595..1871597,1871604..1871609,1871619..1871621, 1871625..1871630,1871637..1871639,1871643..1871645, 1871649..1871654,1871745..1871747,1871751..1871756, 1871763..1871792,1871796..1871807)) /locus_tag="Deba_1668" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1871454..1871471,1871745..1871789)) /locus_tag="Deba_1668" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1871451..1871453,1871667..1871669, 1871745..1871747)) /locus_tag="Deba_1668" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1871523..1871525,1871535..1871540, 1871556..1871594)) /locus_tag="Deba_1668" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1872224..1873123) /locus_tag="Deba_1669" /db_xref="GeneID:9494133" CDS complement(1872224..1873123) /locus_tag="Deba_1669" /note="InterPro IPR013216; KEGG: rci:RCIX1631 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q0W426 Putative uncharacterized protein; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003807631.1" /db_xref="GI:302343102" /db_xref="GeneID:9494133" /translation="MIPAVKMQDLAVEMAPLGRQFWEDAWRRANEASFLKTTQEIDPK AWDRFYDEVSDIYLDLWGQPETLGRAVVDELLANGVVGPGASVLDVGCGPGTLAIPLA KAGARVTALDNSAGMLAALKRQSFSQQLEITTINSNWRDHRPARKSALALAGFFPPAL SPEGLARLESWSSGHCALTLGTGHEPYEFRRELWGEVLQMPFHKGSHHLSCAVNYLIA AERRPNLRHLHWTSRFCQPVEKVARFYRSYFGIFGRRGPEVDGKIASVLRRHCHDGMV LAQGSVQVAVLWWACPRRLAALA" misc_feature complement(<1872704..1873015) /locus_tag="Deba_1669" /note="2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase [Coenzyme metabolism]; Region: UbiG; COG2227" /db_xref="CDD:32409" misc_feature complement(<1872755..1872877) /locus_tag="Deba_1669" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1873120..1874640) /locus_tag="Deba_1670" /db_xref="GeneID:9494134" CDS complement(1873120..1874640) /locus_tag="Deba_1670" /note="COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR006311:IPR000914; KEGG: dae:Dtox_0360 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; SPTR: C8W4W0 extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 5" /protein_id="YP_003807632.1" /db_xref="GI:302343103" /db_xref="GeneID:9494134" /translation="MNASLPERRGLTALAIIAALMTLLMLASSPQPAWAGGDASLVIG VGRDFLDGPDSRAFVHGSTNAWEALTYLGPDMRPLPWLASSWRVEDGGRRWRFKLRPG VKFHDGTDLTAAEAAQALRRIMNHPRYDAGGAYREVAKLEAVGDEVVFSLKRPSPNLA SLVAYYGGPILKPSGFDQAGRIQKFIATGPYRLELARPNQSVELTAFGDYWGPKPRYR RVEFRHIPDAHTRVMALLAGAIDAVADVGAILPEQAAELADDPRVELKRREVATTHYL LFNCRRPPFADVRARRWLAELVDRRALVAALAGDSGEPASAPYTNLAVDWAFGLAAPP AAEQPAAPNRPLLILLHAGTTERWPYLDMAQIIQDRLRQAGWPAEIVVSEAGGYYEAL RKSQFDLSLQPNTLMTGDPDFFYSYYLDQHGAANQGWRNQRAQKLIEAGRHEMDPRAR REIYRQLAQIFGAELPLLALYHEHSIHAQRRGLAPALELDQNFRPLLTERGPWEAQ" misc_feature complement(1873222..1874442) /locus_tag="Deba_1670" /note="The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cl01709" /db_xref="CDD:194181" misc_feature complement(1873378..1874412) /locus_tag="Deba_1670" /note="Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496" /db_xref="CDD:189574" gene complement(1874645..1876774) /locus_tag="Deba_1671" /db_xref="GeneID:9494135" CDS complement(1874645..1876774) /locus_tag="Deba_1671" /note="COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0867 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: B8FI05 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor plug" /protein_id="YP_003807633.1" /db_xref="GI:302343104" /db_xref="GeneID:9494135" /translation="MEKRGRGFIAAVALVAALALGCPPAWAADDGQSAKRNWEADKTE MSDITVTATKTDVKADLSPVDAYSVDRVDIDFQPNYYMNNFGELIRDIPGVHVAQYYP WGPPWVHLRGTGHFLQRTVYLIDGVPAHHFMSAAINPNDIERVDVVLGPSSALYGASA AGGAVNIITRSGHEGMGAVAKMSYGSMNTFRPYTAVGDRDGKFNYYFSYSGDYSDGFQ MKPLDGMVDLFNRGQKQYVRQASLENNKYNYTYLTGKAGWEADNGMGLTVAINYQQRY LYGGQSNYIINDNGDTVVNSVRFVSPLSDWGKLTATTGYQFQSIPSQETTGLSLVNGR VVLNDTITQTTTWDRQRLPLELQTDFYLGENNVLTTGASLAQEKEKTRYYQGTSSNQT YRSDITTDMAAVYMQDQQFLLDDKLSILAGVRYDYWRYHDIYDSGSSDKEPGAVSKDH VTYRGGVKYRFNDTIAVRANAGTAYWPGNAKWYFQNQNVGATQREANPNLEPEQTWMV DLGTDVTLNQWKTLFKATTYYGKIKDIMAYSYDQHPTLPNTILIHTRNIGEAEIYGLE LSLDQPITEHFLFFAAATLNHSRITKDDVNPQNVGNQLLNSPDYWGSVGLRYANAAVL NGEVVFRYSGDRYYTDNNEDLPYFHMDAYQTVDAKIWRDWRLDKNWALSACLSAVNIF NERYATEIVYVNQGFYMEGMIGLRYTW" misc_feature complement(1874711..1876657) /locus_tag="Deba_1671" /note="Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]; Region: CirA; COG1629" /db_xref="CDD:31816" misc_feature complement(1874711..1876588) /locus_tag="Deba_1671" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature complement(order(1876268..1876294,1876328..1876360, 1876388..1876411,1876436..1876453,1876487..1876516, 1876553..1876558,1876565..1876588)) /locus_tag="Deba_1671" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature complement(order(1875638..1875640,1875719..1875721)) /locus_tag="Deba_1671" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene complement(1877010..1877522) /locus_tag="Deba_1672" /db_xref="GeneID:9494136" CDS complement(1877010..1877522) /locus_tag="Deba_1672" /note="KEGG: tye:THEYE_A1933 lipoprotein, SPTR: B5YI92 Lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807634.1" /db_xref="GI:302343105" /db_xref="GeneID:9494136" /translation="MFKKTTRGAALTALAIFGLLAAGCAGPGGAPSYYGYQGGAVGAG VGAVAGALIDHDNPWRGGAIGAGLGALFGGAIGESNAQAAQYGAQPYYQQPSPGYYSP APSYYSPPPSATFYYYQQSGGGPRRHDHHPRGGYHRPPEHHHRPGGYHRPPEHHHRPD GHHRPPRPYR" gene complement(1877574..1878056) /locus_tag="Deba_1673" /db_xref="GeneID:9494137" CDS complement(1877574..1878056) /locus_tag="Deba_1673" /note="KEGG: sfu:Sfum_3879 hypothetical protein; SPTR: A0LQ46 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807635.1" /db_xref="GI:302343106" /db_xref="GeneID:9494137" /translation="MGRPPGPVITMEFKAVSKKIYAAFTLVLLTLAAPSVCPADGPFW EAQWWRDRGTIERLQLTRHEVGRLDQAHQRMRMDLQQAQSAVNVARHRLDRLMRERHL NMAAVEMELNALERASAEVASGRYRYQLKIRRILGPERYAVATGWERPGRPDRWPSGR " gene complement(1878188..1879657) /locus_tag="Deba_1674" /db_xref="GeneID:9494138" CDS complement(1878188..1879657) /locus_tag="Deba_1674" /note="COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR016102:IPR016040:IPR003781; KEGG: dal:Dalk_3032 CoA-binding domain protein; PFAM: CoA-binding domain protein; SPTR: B8FL87 CoA-binding domain protein; PFAM: CoA binding domain" /codon_start=1 /transl_table=11 /product="CoA-binding domain protein" /protein_id="YP_003807636.1" /db_xref="GI:302343107" /db_xref="GeneID:9494138" /translation="MSSSITQNPLYYLINPRGIAFFGASNNFINMGTMILNSVLNMGY EGQIYPIHPKESTVLGLTAYTAIDQTPQAPDLAILVLPTKIVGDVLEQCGRRGVKNAV VVSGGFQESGPEGAAMQERLMRIAEQYGMRFLGPNCLGVANPHCKINTTPLPYECGPG FIGLASQSGSFVTQMYDQLRRLSLGFSTALSVGNEANVDLVDCLEYLGDDPHTKVIGM YVETIRRGRRFVEVARRVALKKPIVAFYVGGSETGRRAALSHTGALAGPDKLYDGILR QAGVIRAQTITELFDFCWALGSLPLPAGPNAVIQTDSGGPGAAAADACERSGLKLPPL GPSTIELLRPLVPHTGSLGNPVDITFPREFRNYYWDIPDALLRDENIHALLIYFVLPV ELIYPSIAAQGLPVSEAKRQAVELVSGLLDQTRSLIDVHGKPVVGYSFNSLEQEPLRG LIARGMPVLSSPQRAARAVAAMSQYARLRQKLIAQGQTA" misc_feature complement(1878230..1879630) /locus_tag="Deba_1674" /note="acetyl coenzyme A synthetase (ADP forming), alpha domain; Region: AcCoA-syn-alpha; TIGR02717" /db_xref="CDD:131764" misc_feature complement(1879211..1879627) /locus_tag="Deba_1674" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(1879660..1880355) /locus_tag="Deba_1675" /db_xref="GeneID:9494139" CDS complement(1879660..1880355) /locus_tag="Deba_1675" /note="COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR013650:IPR011761; KEGG: dol:Dole_0137 ATP-grasp domain-containing protein; PFAM: ATP-grasp domain protein; SPTR: A8ZSN4 ATP-grasp domain protein; PFAM: ATP-grasp domain" /codon_start=1 /transl_table=11 /product="ATP-grasp domain protein" /protein_id="YP_003807637.1" /db_xref="GI:302343108" /db_xref="GeneID:9494139" /translation="MDVGRLIATARAKGQAALNEHESKLALAAHGVPVSAEGLAQSAD QAVELARELGFPVALKACAASLMHKSEGGWVRLGLGDETAVRAAYDDIAGRAARAGLA LDGVLVQEMVGGNRELVLGLSRDPQFGPCVMLGLGGVLAEALADTVFRMAPLERLEVL DMLEQLRCRPMLAAFRGQSPADLEALCAAVIGLGRLGLEHDAVVEVDVNPLIITARGR VKAVDGLVVLARS" misc_feature complement(1879882..>1880316) /locus_tag="Deba_1675" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042" /db_xref="CDD:31244" misc_feature complement(<1880173..1880304) /locus_tag="Deba_1675" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene complement(1880358..1880819) /locus_tag="Deba_1676" /db_xref="GeneID:9494140" CDS complement(1880358..1880819) /locus_tag="Deba_1676" /note="COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: drt:Dret_0131 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C8WZF8 Transcriptional regulator, MarR family; PFAM: MarR family" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator" /protein_id="YP_003807638.1" /db_xref="GI:302343109" /db_xref="GeneID:9494140" /translation="MKLQLFPIEQSHGFIMRLAANRMKSGLNRAFAAAGLEHTAEHWS VLSALMGRDGQSQTEVSQNVTKDRQNITRIIDALEAAGLVQRRAHPSDRRCNQVFITA AGRQAHQRLTAVAEGFTRAAFAGLGQGELDELTRINKIIANNINKIYEKED" misc_feature complement(1880442..1880705) /locus_tag="Deba_1676" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 1880993..1881691 /locus_tag="Deba_1677" /db_xref="GeneID:9494141" CDS 1880993..1881691 /locus_tag="Deba_1677" /note="COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR000595:IPR001808:IPR018490:IPR014710:IPR 011991:IPR012318; KEGG: dal:Dalk_0952 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: B8FI88 Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain" /codon_start=1 /transl_table=11 /product="Crp/Fnr family transcriptional regulator" /protein_id="YP_003807639.1" /db_xref="GI:302343110" /db_xref="GeneID:9494141" /translation="MSNCQCEELAQGQIALSNVCLGQLWLFEDLDAADQAALTQAARR RVYQPGQAVFRQGDPAQTLFLIKGGRVKLAKLGQDGAEIILDFRKAGDFLGENMLNDA GALPVSAVAVEPTLTCGFSRQGFERLVLERPRLGLQVIKNLSRRIDWLSSQVDSLAQV SLEQRLYQALQNVAREHGRPTEGGLAIEMPLTHEELGFLVGAHRVSITRALKSLRQAG KVLQDGRRLIVAEA" misc_feature 1881128..1881412 /locus_tag="Deba_1677" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature 1881140..1881679 /locus_tag="Deba_1677" /note="global nitrogen regulator NtcA, cyanobacterial; Region: NtcA_cyano; TIGR03697" /db_xref="CDD:163409" misc_feature order(1881275..1881280,1881305..1881313) /locus_tag="Deba_1677" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature order(1881371..1881379,1881389..1881397) /locus_tag="Deba_1677" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature 1881539..1881679 /locus_tag="Deba_1677" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 1881815..1883317 /locus_tag="Deba_1678" /db_xref="GeneID:9494142" CDS 1881815..1883317 /locus_tag="Deba_1678" /note="COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797:IPR002229; KEGG: gbm:Gbem_1791 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: B5EAA1 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein" /protein_id="YP_003807640.1" /db_xref="GI:302343111" /db_xref="GeneID:9494142" /translation="MPRFSSTVNTLFNWTAMLVAIATGLVVTPLIISHLGKPLYGAWS LVLTIVGYSALLNVGVTPAISHYVAIYRGQKDTAAMAGVISNGLILLALLCALVVGGA WLAAEPVSELLDPSGQMRQTFATMLRLGGLGAACSFLGVYFMSILQAYELFLPNNAVV AFYHVYRTVAIAVVLGLGHGPIGLMAAHISAEALKALLHAVLCYRLLPHLRPDWRAFS PRTGLMLISFGALSTLLSVGDLLRFQLDQAVIGKFLDFTQIAIYAVAAMLVRYMLRIV GAFVDVLTPRLTSLTGGGHAAMTTELFLRSLTISSTISLILCAGLVLLGWPFLRLWLG QGFQGSVAVLWILAVSFTADLMQAPAVSVMFARERHGLLAAINMIEGACNLALSIYLA PRMGIVGVALGTAAPMLVNKLLVQPLVVSRELGLSYWRYWRPVGLPLVLMALVTAAGF ALGLPYDNTMGWLGFLGWAVAVAAPFAAFMVFTLVRHGVDLTRGAGQPTP" misc_feature 1881839..1883179 /locus_tag="Deba_1678" /note="Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244" /db_xref="CDD:32425" misc_feature 1881839..1882684 /locus_tag="Deba_1678" /note="Polysaccharide biosynthesis protein; Region: Polysacc_synt; cl10513" /db_xref="CDD:187004" misc_feature <1882316..1883176 /locus_tag="Deba_1678" /note="Polysaccharide biosynthesis protein; Region: Polysacc_synt; cl10513" /db_xref="CDD:187004" gene complement(1883539..1883682) /locus_tag="Deba_1679" /db_xref="GeneID:9494143" CDS complement(1883539..1883682) /locus_tag="Deba_1679" /note="KEGG: nha:Nham_3101 GTP-dependent nucleic acid-binding protein EngD; SPTR: B5JD81 Inner membrane protein CreD" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807641.1" /db_xref="GI:302343112" /db_xref="GeneID:9494143" /translation="MTLPPTSDRAQLTGRASARDEAMLLAMLEAEDYALAEGSLLHFV KAA" gene complement(1883679..1883876) /locus_tag="Deba_1680" /db_xref="GeneID:9494144" CDS complement(1883679..1883876) /locus_tag="Deba_1680" /note="KEGG: hypothetical protein; SPTR: A4QRJ0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807642.1" /db_xref="GI:302343113" /db_xref="GeneID:9494144" /translation="MNAELSRRAAIVINMSTFLERNDREEFVKAVCAAKDFDSLPAKW REEMVRTEKEIDELRKKLGVK" gene 1884346..1885362 /locus_tag="Deba_1681" /db_xref="GeneID:9494145" CDS 1884346..1885362 /locus_tag="Deba_1681" /note="COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR018060:IPR009057:IPR000005:IPR020449:IPR 018062; KEGG: dsa:Desal_1879 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C6BUD1 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_003807643.1" /db_xref="GI:302343114" /db_xref="GeneID:9494145" /translation="MPLPRSPRGVIVKYVINLQTPDPARRSASIDYRLEDAPPAARSV VEIWRLRPGLILNVARLAPHATERDSFDIDQGPVQFGFTVAGQNRCSYANGRLAGQSH ELTPGCNSIFHLSKTKGNIDHAPDKAMCVVGVMATPEFLSQYLDDAQSPPPKLLWPTL DGRADSQFAWYGRPHPRKDALVRELLSHPHQGGLERMRLEGLVLQLVGGQLAELAMAE RQRPTAAPLLRGDDLERVGLARRILLQRAEDPPSLRQLAREAGLNEKKLKYGFRQVFG TSVFAYLRDHRLETAKGLLESGRMNVSEAAFCVGYASLSHFSRAFKRRFGLNPSDCLQ APPL" misc_feature 1885093..1885338 /locus_tag="Deba_1681" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature 1885231..1885338 /locus_tag="Deba_1681" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 1885572..1887626 /locus_tag="Deba_1682" /db_xref="GeneID:9494146" CDS 1885572..1887626 /locus_tag="Deba_1682" /note="COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010917; KEGG: dds:Ddes_0429 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8J3V6 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_003807644.1" /db_xref="GI:302343115" /db_xref="GeneID:9494146" /translation="MKKAVFIAAWLLLLPAPCLAADNQSAVVLEQVTVSAGKRESALQ DFAGSVSVVDEATLEEKGAWTLGEALQLTPNAYMKTALSGNTVVIRGLSTIDTSLFSP AGLYVDDVAYPLTYMQNLDFLDVERLEVLRGPQGALYGANSEAGVVNVTLNQPGPQVK AKAQLDYGDYDTLRMVGQASGPVYADKVFFGASLLRASSDGYVENLYKHDDRASKEEL TGARGVLRLTPGPDWDVSLAVDGSRQNLGLGIMRYLDGPNRTEAFEVRSNAADVAHED ALGQSLRVKYAGRWADLLSITAHRDYAYDFEMDADRTSLPVARSNMDLDQSSWSQELR LSSKAAGPLSWLAGVYGKRDELDVSMDWTRAVAAMSSKLKTDSTLENYAAFGQATYAI IEGLRLSAGLRAEAWRTSGQQRYRTISLDRSYEKDLDDVEILPMATLAYDLRAGVMAY ATISTGFLAGGYNYFSSNCLDTFTYQPEHTVNYELGLKTSWLDDRLTANVALFYTQIR DKQVREEAPGGGIGAWSFTNAAEAHSSGGEIELAARPIQGLTLSAGLGYAATEVDDWT TTSGGVTYDYQGKQLPWAPELTYNLAADYHHASGLFARADLFGAGKQYFDAENTLSDN GYQLVGLRLGYEAAHYNVSLWCKNLFDADYANKKVTDASGYTLIEDGAPRTYGVSLGW RF" misc_feature 1885704..1887623 /locus_tag="Deba_1682" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:162535" misc_feature 1885716..1887623 /locus_tag="Deba_1682" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1885716..1885745,1885773..1885802,1885830..1885847, 1885866..1885889,1885935..1885967,1886001..1886027) /locus_tag="Deba_1682" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(1886505..1886507,1886583..1886585) /locus_tag="Deba_1682" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1887630..1888667 /locus_tag="Deba_1683" /db_xref="GeneID:9494147" CDS 1887630..1888667 /locus_tag="Deba_1683" /note="InterPro IPR013217; KEGG: dsa:Desal_1877 methyltransferase type 12; PFAM: methyltransferase type 12; SPTR: C6BUC9 methyltransferase type 12; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_003807645.1" /db_xref="GI:302343116" /db_xref="GeneID:9494147" /translation="MPCEINDDAQSFGPLAQWLQGPVLLALAEAAIELDLPELLAQTG DLDALARMLGAHRVNLGLLLDAMTAMGLAVKQDGRYANTALGEMYLRRQRDTYLGDML INLKQMQHRHLDKLAELVRSGPPEVHGAQRLSSPERWRASAGHLANYQRAYLAPLAVE LVEALPEFPAMKRALDLGGGPGLVIMALLERRPDLRGALCDLPPLAEVAREHAAARNL EGRLAFIAGDYNQVDLGQGYDLIWASHTLYYAKDMDAFMQKLLAALNPGGVFICLHEG LTEARTAPSLHVLARLCLALEGQDVSFDHGFLAENMRRAGFARVTSRPIDGPMGLVWL DVARKARAEEQ" misc_feature 1887816..1888592 /locus_tag="Deba_1683" /note="C-20 methyltransferase BchU; Region: C20_methyl_CrtF; TIGR02716" /db_xref="CDD:131763" misc_feature 1888146..1888445 /locus_tag="Deba_1683" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(1888158..1888178,1888230..1888235,1888308..1888316, 1888359..1888361) /locus_tag="Deba_1683" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1888664..1889608 /locus_tag="Deba_1684" /db_xref="GeneID:9494148" CDS 1888664..1889608 /locus_tag="Deba_1684" /note="COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: dds:Ddes_0427 hypothetical protein; SPTR: B8J3V4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807646.1" /db_xref="GI:302343117" /db_xref="GeneID:9494148" /translation="MKRLIYLVVLCLLAASPVGAAEPLRLSGPPVVESLPLMAMASQG RLPGLDLAVEFRPWRGPDQLRAMIAGGQVDGVLITTAMAAVLRARGLPCRVLAVMSPP VWLVTAKPRLASLADMADRPIVLPFGPGEMPALLLRAVAAQSGVSLRTSQAGSALEAV NLLAMGRADGAVLSEPAASLAVAKAGLERPLHKSLDLRQAWALAFPQCPQLASTALAL VGPRANDPAVGQAVARAFGQSCPWVQEHDDQARALAAAMFPDLAAQLTPGARPVISLL DGPEGQRAALFVLARLHELSPAATGGVLPGPELWAAQP" misc_feature 1888673..>1889410 /locus_tag="Deba_1684" /note="ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715" /db_xref="CDD:31059" gene 1889605..1891176 /locus_tag="Deba_1685" /db_xref="GeneID:9494149" CDS 1889605..1891176 /locus_tag="Deba_1685" /note="COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003593:IPR000515:IPR003439:IPR017871; KEGG: dsa:Desal_1875 binding-protein-dependent transport systems inner membrane component; PFAM: ABC transporter related; binding-protein-dependent transport systems inner membrane component; SMART: ATPase AAA; SPTR: C6BUC7 Binding-protein-dependent transport systems inner membrane component; PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807647.1" /db_xref="GI:302343118" /db_xref="GeneID:9494149" /translation="MSQVPRRGRLTGVAWSALGLVLLLALWQAAATHYSSLAIASPWD TLTALGQMLSQGDFWADHLLVSLGRVTVGLGLGLAAGLSLGVLAGALPPLRRVLSPTR WMLMSVPGVVVIMLAMLWFGMGGAMVVAIVATMVAPLIYISVVEGLDAVDARQLEMAR VYHFPLAMRLYRIHGMAMAGPLIAGGLMALGSAIRLVVLAEALGAAEGLGYALALART NLETPRLYALALLCVCVVAGVELAVLRPVRRRVLRRGQRPPASLDDAAGDQPAPGNGP HDDADRPWVQIPPCATPNRQALDQAQPLVALEGVCLAYQGRTVLDGVDLTVKPGEALG VLGPSGAGKSTLLRLIAGLERPDAGHLTTRVRRLGYAFQEPRLLPWCTAQENVALPLR ALGLERRQALAMARRHLELMELTGRENAFPAELSGGMRQRVSLARALAVGADLMLLDE PFTGLDPRLRDEMLRLLESGLRESQAAAIMVTHDQADLPACTGRVVVLDGPGPLKNLA PPARFTRRLAGQGGL" misc_feature 1889701..>1890189 /locus_tag="Deba_1685" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600" /db_xref="CDD:30945" misc_feature 1890514..1891104 /locus_tag="Deba_1685" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature 1890517..1891107 /locus_tag="Deba_1685" /note="NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars...; Region: ABC_NrtD_SsuB_transporters; cd03293" /db_xref="CDD:73052" misc_feature 1890613..1890636 /locus_tag="Deba_1685" /note="Walker A/P-loop; other site" /db_xref="CDD:73052" misc_feature order(1890622..1890627,1890631..1890639,1890721..1890723, 1890949..1890954,1891051..1891053) /locus_tag="Deba_1685" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73052" misc_feature 1890712..1890723 /locus_tag="Deba_1685" /note="Q-loop/lid; other site" /db_xref="CDD:73052" misc_feature 1890877..1890906 /locus_tag="Deba_1685" /note="ABC transporter signature motif; other site" /db_xref="CDD:73052" misc_feature 1890937..1890954 /locus_tag="Deba_1685" /note="Walker B; other site" /db_xref="CDD:73052" misc_feature 1890961..1890972 /locus_tag="Deba_1685" /note="D-loop; other site" /db_xref="CDD:73052" misc_feature 1891039..1891059 /locus_tag="Deba_1685" /note="H-loop/switch region; other site" /db_xref="CDD:73052" gene 1891482..1894394 /locus_tag="Deba_1686" /db_xref="GeneID:9494150" CDS 1891482..1894394 /locus_tag="Deba_1686" /note="InterPro IPR018524; KEGG: mvn:Mevan_0111 hypothetical protein; SPTR: A7BPX5 Membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807648.1" /db_xref="GI:302343119" /db_xref="GeneID:9494150" /translation="MPTFVLSVNDLEAAMIHALARGADNHGQALGHVVDLKTPWGRSD AASLDAETFAGLGDTVFLVEINSPQMQERIRNSGREVVVIDHHLYQSKDAGPLDLRTG LSSLEQVINYTRRQPSQRVAALPAYLDISSPGGRKLSFAELTRLISANDRGHIPLLAA EAMKILGLDPRGYAPPKIKHQSSLWDVAELDLAKIGAGWEQRPATWGQDEQKPADWQA MEELVRDIRLRESALGLWLVEGKDIEELALPEVFQRQYRLTADLMDQAINYIACAQGK QKLRLLATGRDEAADPALYLIQAPIRYRKVLLDALYFWRAEQGHSLSERLAALIVFHE DDHEDKPRLLEFYGDDAEGGAVEQWFKPETRSAWGSTRLDFWAGGGSGCFFGAEDRLG AEAEALNALANHILDTVLTGNRPVRKWRTSFLQPLRFCDEELKNKVLDGLRQAASQPQ SGLFPVVIGPEERHYFLPHVEPTLAPGFAGQRTEIPELIEMARRGLSIASVERFFEGL CLQLTLPNHPKPHLLPIASVRLHFFYHSVMALEWVIGDAATAEEDQTVGQRDEASENI SNEPAEYPPGQPYWRGLLADDGPDALSLAQVLDINAKLRQCYSTYSSDGARGGQTMIR LVERGRILGALLHGGVVNEHRITAWFRALLEKALGLDNDAHAESWLNEKLELLSDDRT RVVSSVIPAGAYPQTPWGRERFEEILARLNTVDPYGQGHFYEPRVAMEELGRGLYERF RANGSLFACTPHSLVFLGFGWFPTDIIHKRHMATMYRRMFLVAMFYQSILHALALSLN EAGRGNGVGPIREHEFKDLRARIIYFTNHLWFRRLSSQVQGVELFDLLSARAGLDQQY QEIADEIERAESFHTAVARQRDESFHRAVAFWGAPLVLFVAMLAIPADGYFDLWGWLA RLGQNHVAPWMCVSGDLRWLTLLLGLFFAAALALLPGWLLYLAINKWRGRRKKRRK" misc_feature 1891746..>1892246 /locus_tag="Deba_1686" /note="Enterobacterial virulence protein IpgD; Region: IpgD; pfam05925" /db_xref="CDD:147852" repeat_region 1894545..1895010 /note="CRISPR" gene complement(1895233..1897221) /locus_tag="Deba_1687" /db_xref="GeneID:9494151" CDS complement(1895233..1897221) /locus_tag="Deba_1687" /note="KEGG: rru:Rru_A1148 hypothetical protein; SPTR: Q2RV96 Putative uncharacterized protein; PFAM: RAMP superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807649.1" /db_xref="GI:302343120" /db_xref="GeneID:9494151" /translation="MTEPKTSTAPKASYRFVPLNSRVIPAPLRLDQISHARPLPGCWS GGMTVEWRNETPICVGAPGQDKDDSVDSPFCLPGQRYALPGPSLKGMIRAVVEIATFS HLGRINDHHRFGYRDFNDQEHYRQHVKPNDLKAGWLRYDQKSGQWQLAAAKGERGFAM LPIDLLLEAIDKKVKREPGINEAKKKRDIIAKAGFGPHVISYEHKAKHGSGVNIVSAL FDAVVDKKNTGVIVCADTKKKADPTPKKGDQKFEAIFHEPGEFKALPPDYMERFAFLH SKMTKSAMEPEGNWKTWLKGMGYPNPLNAGGKTEAPQQGYDFPGIPVYYCGQPPVDGR TEDDGFHMGFSRVIKIPYEFSVGQLAQRTLGRDGEKYSIPELGRELDFARAIFGDVEG SLPSERKKAADGPDRLALKGRVAFEFATLAEGRNPYLMPVSTTVMMGPKASFWPFYLR NGQDPGSSADYNDEMAILAGRKRYPVRCLGQQLPKPPADAKEKQKTKLRFLGAGHVFR GRIRFRNLHAAELGALLWALNFGDFSEPTKYFHAMGRAKGHGYGRLAATISQFRATAH CPAGQAIEARDMAPFVEEFTAYMDAGLRWLGYGFGFENSPAVTALRALADPQKSKNND QHLGVMSMKDFRTLKRIDQAHDLLCDYVSADDWARMRP" misc_feature complement(1895443..1897182) /locus_tag="Deba_1687" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cl00592" /db_xref="CDD:193881" gene complement(1897208..1898617) /locus_tag="Deba_1688" /db_xref="GeneID:9494152" CDS complement(1897208..1898617) /locus_tag="Deba_1688" /note="InterPro IPR005537; KEGG: rru:Rru_A1149 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Q2RV95 Putative uncharacterized protein; PFAM: RAMP superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807650.1" /db_xref="GI:302343121" /db_xref="GeneID:9494152" /translation="MLDQVILCGQLEALSPLHVGTGDFTPLAQLFENDSRKLSHLAAD DRGRGALVATIVRDHENRPCLSATAIKGCLRAACRAVGWDQLDIKHLFGEARESEDVG AMAKVLLRLANMDGLEQYFPPERTPLPYYRHEALSYIQTRIRVDHDAGVAADKYLFFQ EMVPQGVRFRFRAVFRGAWEECQQKLLPALALLGRHQGVALGKGYTLGNGRIRLVPDS LQARVVGFDALRCLPTVGAKTAVCLPADASASPAVRISLRLACEGPFLVLDPTGADAA AQKGAANQLQPLLRQDNQPDLLASSLMGALRARLAWLSQLADESDGDDPERILKPRQS PVELSTSERLFGVTGWRGLVRLASLEIEDAGQTCVVPRVALDRFTAGPIDGALFFTNA RVGVKYKVRLVLESRRHTDAATNQAQVFGAGAETDEKAFRALIHELTVDDPLLMLGHG TNQGFGWFQVEEIARDDRA" misc_feature complement(1897988..1898581) /locus_tag="Deba_1688" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cd09726" /db_xref="CDD:187857" misc_feature complement(1897250..1897756) /locus_tag="Deba_1688" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cd09726" /db_xref="CDD:187857" gene complement(1898610..1900472) /locus_tag="Deba_1689" /db_xref="GeneID:9494153" CDS complement(1898610..1900472) /locus_tag="Deba_1689" /note="KEGG: rru:Rru_A1150 hypothetical protein; SPTR: Q2RV94 Putative uncharacterized protein; PFAM: RAMP superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807651.1" /db_xref="GI:302343122" /db_xref="GeneID:9494153" /translation="MAKQRHEYRICLRLESPFASQGLNVAFLGVDTHLARDHAGKLII PGALLRGVLRHTLLEMAGRMQAQPRAAQDPPPLFDEKKVCEWFGSASANPWPRSKNGQ DEPAKPEPSADRFAPQRGLARVDDLVCGADEPARPGFLTRIQINHQSGSVETGALQVL EQPFALGAPVDFRGAMTFYGDDAEAKVFRQATETALGFIRALGGVKSAGFGFLAETAC GDYAEALTKAATLELVNSQPTPAATPPSAAGPVVFDLRFKDPYLVDAELVALNIYQGR EIVPGGVIKGCLARMLELAGESGWQGALQRMRLSHAVPLGPTGDRPRFEPPLTRYRDK AGQEGDLFDHANDFDGLSEEVWFAVDWKHDGDGSDYHVRTRTAMAPGAEMAAESQLFS YRLVKPEEKVLRFTALFAPEDEQNSTVVNTILATLCSGLDFVGKTGARATVTWRPEAS AERQARPGGPDGKTWRVVLQTPAALFSPEKCRSDQSPEARALYLQYWRDLLTLWPKAG KLDEARFDFFAAQAWDGGYRAMRYPSSPGRYLPYILTQPGSVFLIAFADGDPAQQRAL FAHLIRHGLPVYQAETWNVPEPWRACPYLPENGYGEIIADWEDVLRLRKVGGHA" misc_feature complement(1899834..1900439) /locus_tag="Deba_1689" /note="CRISPR/Cas system-associated RAMP superfamily protein; Region: RAMP_I_III; cl00592" /db_xref="CDD:193881" gene complement(1900465..1902120) /locus_tag="Deba_1690" /db_xref="GeneID:9494154" CDS complement(1900465..1902120) /locus_tag="Deba_1690" /note="KEGG: rru:Rru_A1151 hypothetical protein; SPTR: Q2RV93 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807652.1" /db_xref="GI:302343123" /db_xref="GeneID:9494154" /translation="MARLWLRIEGQNFQNTIDDTDDLSTLRGGSRALLELPGLLFQHL AAQKRYNLEQLYTGASEGLALITTDDAAPLDDFVATLQGDVAAYLQHPGEPLNDIPVY LTVSHDVAMVPDDDRDQPAALARLNNRIRRQQFQKLTVDPLPPASASSTGRPCQWDLK RPAACEVTKRSPGEPEGDVFLVSASVRARFRSGRDLRQKLYERELGEAAKALVGENNA RFANSFAEIVANPPPGLPKKIANKMALLYMDGNKFGKIRAKLGVEAFSGPVLAARKSL LSGIVEYMGASVYPTNISEKTESIVPFETLGWGGDESWMVLPAWEAVGLLLCLEQMLG GEQWRLPDGNGESIQLTYGIGVVFCHCKTPIREVRRLAKGLADHAKKVNPDDPAQQKN VLQYQVLLGIDPPVDMTGHRQGLYGRSEPAALTLGFGPCQTASGPVDGFADLVKAIKE LKGMGKGKGMPYGRLLRLLDDGIAQGLLTAGDASQTARTAWLDKADEEMARYGCPALR GLCHPHLGYADAHPLMPLINLTQLWEYVEPAPKADAAGEAGIG" repeat_region 1902371..1902765 /note="CRISPR" gene 1902918..1904885 /locus_tag="Deba_1691" /db_xref="GeneID:9494155" CDS 1902918..1904885 /locus_tag="Deba_1691" /note="COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729:IPR000477:IPR000123; KEGG: pph:Ppha_2459 CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; RNA-directed DNA polymerase (Reverse transcriptase); SPTR: B4SEW7 CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); CRISPR associated protein Cas1; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; CRISPR-associated protein Cas1" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas1" /protein_id="YP_003807653.1" /db_xref="GI:302343124" /db_xref="GeneID:9494155" /translation="MVDMRLYAKIIAKSSLMLAWEKVLANKGAPGGDRQTLDDFAESL ERNLEGLHAALRSASYRPGPIRNVSIPKRDGSPRRLSIPSVADRVVQTALCQGLTPIL EPEMEDASFAYRPGRSVQMAVERVGRYFRQGYHWVVDGDIDDYFDSIPHHGLMAVLRR YVDDQDVLGLIAQWLAHAHAGGVGVSQGSPLSPLLANIYLDDMDERIGRTGARLVRFA DDFLLLCKSEERARESLAAMSALLAEYGLGLNPDKTRIVNFEQGFEFLGRLFVRSMAL EREQESDAPQETPPGPTPDDPSPPVEPLHQASEGPGFQDLSPRLRVMYLSRKGCRLDV RGRAFVVRSGPEPDAPELMVVLPSQLDRVELWPGCDISQKAQRFALECRTPVAYVDGW GRTLGVLEPMVADKAALHLAQAAVALDETKRLALARLICAGRVRGQRALLMRLNRRRK NSDIESNLAAFKQLPRRIATATTISELLGLEGEAAKRYWASLALLLDKSWGFSSRQRR PPRDGVNMVISYVASMLYRDLRCLAARHGLHPGFASLHGSLDGKPGCISDLVEEFRAP LCEGLAVYLANNHILKKEMFYKTDKWPCHVTPEGRETIIRAYEAWLDRPVKSPRSGEK VKWRGLLEEQVLAYRDHVMGRSVYAPYDMKY" misc_feature 1903113..1903727 /locus_tag="Deba_1691" /note="RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable...; Region: RT_G2_intron; cd01651" /db_xref="CDD:73157" misc_feature 1903125..1903718 /locus_tag="Deba_1691" /note="Reverse transcriptase (RNA-dependent DNA polymerase); Region: RVT_1; pfam00078" /db_xref="CDD:143860" misc_feature order(1903338..1903355,1903476..1903481,1903566..1903568, 1903572..1903577,1903713..1903718) /locus_tag="Deba_1691" /note="putative active site [active]" /db_xref="CDD:73157" misc_feature order(1903338..1903355,1903476..1903478,1903572..1903574) /locus_tag="Deba_1691" /note="putative NTP binding site [chemical binding]; other site" /db_xref="CDD:73157" misc_feature 1903479..1903481 /locus_tag="Deba_1691" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:73157" misc_feature 1903878..1904849 /locus_tag="Deba_1691" /note="CRISPR/Cas system-associated protein Cas1; Region: Cas1_I-II-III; cd09634" /db_xref="CDD:187766" gene 1904897..1905184 /locus_tag="Deba_1692" /db_xref="GeneID:9494156" CDS 1904897..1905184 /locus_tag="Deba_1692" /note="InterPro IPR003799; KEGG: chl:Chy400_3649 CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; SPTR: B9LDQ2 CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas2" /protein_id="YP_003807654.1" /db_xref="GI:302343125" /db_xref="GeneID:9494156" /translation="MSGAEMLVVFAYDVEDDSRRRRLARVLGNHAVRVQKSVFEAWLD EGAAKIIASRAAAELGPRDSLRVYALDASGVGKTLVFGVTAPPQSHDYYFV" misc_feature 1904918..1905145 /locus_tag="Deba_1692" /note="CRISPR/Cas system-associated protein Cas2; Region: Cas2_I_II_III; cd09725" /db_xref="CDD:187856" gene 1905197..1906117 /locus_tag="Deba_1693" /db_xref="GeneID:9494157" CDS 1905197..1906117 /locus_tag="Deba_1693" /note="KEGG: dau:Daud_1295 hypothetical protein; SPTR: A4BL60 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2276)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807655.1" /db_xref="GI:302343126" /db_xref="GeneID:9494157" /translation="MTKDGLSAWLLHPDGQASLVELCGLWRETLVRASCLLDPPPWQE GVAPWELAGKVRGSWGDDLKRGASLLALAGQPCPWWPPCALDVFFRPQGKLTGGLEIP KPYVIRVDYEPEAGMVRIVLALFGLAGDYATAAAASLAAALRHNLRWAQGRAPGCELA DMEIVAAPAPDPGDGAHKACLRFLAPLNQRSGRESLLSPQSMLTGLANRVSGLARWHG LELAEDFKELKRLIRSLQGEFEQAERHHWFRQSQRQDGRNIPMEGFLGDLWLRGDLLA LTPLLALGERCHAGGRAALGMGQYRLEWQT" gene 1906277..1907239 /locus_tag="Deba_1694" /db_xref="GeneID:9494158" CDS 1906277..1907239 /locus_tag="Deba_1694" /note="InterPro IPR000157; KEGG: mag:amb3409 hypothetical protein; SPTR: Q2W1R2 FOG: TPR repeat" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807656.1" /db_xref="GI:302343127" /db_xref="GeneID:9494158" /translation="MPPANRRKVFISYCHEDKDLARDRLLACLEAGGVEAIIDIKHFK GGTTLAGQMDQHQDDADQQVLLISKKYLGQPNCQREMARAIAMDPDFTHGLAGNGPKV LPVLLGDVERAELPAGLTRPNPLMPDLRDKRPCAEGETEWDRLVKLCGADLGTSPTAW LKARDKIRRLMRNDNPVCLYVNDNRSVNWRGLIDNVCSEHDPWDALPDLDHRFELKAP CPTDKIIGDIAGARDVLAFNQHLEQRQTRPCRVCFTHFHLAAQHPGWDAGFLSNLTNL VKKQHIWLLAQTRRPMDATERELVPPNAYDYESSLAALCAEVRL" gene 1907239..1909611 /locus_tag="Deba_1695" /db_xref="GeneID:9494159" CDS 1907239..1909611 /locus_tag="Deba_1695" /note="KEGG: ana:alr0841 hypothetical protein; SPTR: B4W3A2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807657.1" /db_xref="GI:302343128" /db_xref="GeneID:9494159" /translation="MAKPSLPLAELRLWPSHHRAALAWLGLFYRDPMLFWEELESILQ LKSRIKATFCLYAHALPWLFLVVVLGRWLLVVLLQPELPYHGWAALPRHDFWMDSVFG LAVGLASGLAFGLAYGLAVGLAVGLAKGLARGLVSGLAVGLLFGLVYGLLFGLDSGLV SGLVYGLLFGLVSGLVSGLVSGLLFGLDSGLVSGLVYGLAVGLVSGLVYGLAVGLAGG LAEGLALGLALGLAFFISLTRAYYLPVHFFFLWPNLKANRYPRHPVAWDQMCDARFFG LGRLLVAWAQAQPQHGRAEIERLIDTYPSQRQEALWAKTVLAIRDMAMEADLAKLPAM AAGLPRGKRGYPSQTEQVESLLSPVAAGYLRLRSQASPWRKLAAAENLRAAVEQFHGQ VSGFARPLGPELRQAADQWRTLANNEVAKAQANMGKEKIPACFKAGGELKMDNDAFVK REGVLEKLEDALEDPRSRASLILQGRRRTGKSSLIANLRPFLPEDVLLVDVSMQSAAS RTSQNHFAASIASQICQVVPEAALGPPPEREMPLCEFEDLARRADELLGAQRRQLLIV VDEYETIDSLIGEGRFHADDILSLLRVAIEKRRNIFWMFVGTHHIAELRNAQWASYLI SPRTIAMPRFTPDETRVLLLEPMRHASAEHKVVHKESSWGGSEGIARIHQETGGWPYF VQLLAENLRGIINNTPQATTVTAKIFERARREAVDEAESALRQILAPDLEGAEAQWEY LRGFVDQEEQPPPTDREVLQGLLWRDLIERHDNCYRLTVPLFRLWIAKQP" misc_feature 1908580..>1908945 /locus_tag="Deba_1695" /note="Archaeal ATPase; Region: Arch_ATPase; pfam01637" /db_xref="CDD:145008" gene 1909785..1910387 /locus_tag="Deba_1696" /db_xref="GeneID:9494160" CDS 1909785..1910387 /locus_tag="Deba_1696" /note="InterPro IPR009057:IPR001647:IPR012287; KEGG: sus:Acid_2363 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q025G7 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003807658.1" /db_xref="GI:302343129" /db_xref="GeneID:9494160" /translation="MSHGENRMSAEQRKLLILETALDVFAQKGFSGARTKEIAREAGV SETLLFRHFKNKENLYVEALHQLFAHHPVGEEMAPAMRAGDDREVLYTIARHIMEHVG RDKRIVRLTFFSSLEGLHMADHERTPIRILEEYFAKRMQEGALRAKEPHLTARFFLFA VFLYVTDMHMNLFGEPLGISDDEAAWTLADIFMDGLLPRG" misc_feature 1909785..1910384 /locus_tag="Deba_1696" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 1909833..1909973 /locus_tag="Deba_1696" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1910447..1911016 /locus_tag="Deba_1697" /db_xref="GeneID:9494161" CDS 1910447..1911016 /locus_tag="Deba_1697" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: afw:Anae109_4101 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A7HHT3 methyltransferase type 11; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003807659.1" /db_xref="GI:302343130" /db_xref="GeneID:9494161" /translation="MAEHVCPVWVGYLLLSPLRKLMESPRKLLGSYISPGMTVLEPGC GMGFFTLPVARMVGPEGKVVAVDIQPKMLQKVRARAASAKLLDRIETRLATGDVLGLE DLAGGVDFALALHVVHELKDQAGFFREIHEALKPGGRLLVVEPRGHVSADNFAEFLAL AHRAGLETDPAEPPRGLRALLVKPERKEQ" misc_feature 1910558..1910875 /locus_tag="Deba_1697" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(1910570..1910590,1910645..1910650,1910732..1910740, 1910786..1910788) /locus_tag="Deba_1697" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1911052..1911723 /locus_tag="Deba_1698" /db_xref="GeneID:9494162" CDS 1911052..1911723 /locus_tag="Deba_1698" /note="KEGG: hoh:Hoch_4580 phosphate ABC transporter, inner membrane subunit PstA; SPTR: C1DMD3 D-galactonate transporter" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807660.1" /db_xref="GI:302343131" /db_xref="GeneID:9494162" /translation="MVIAFAMTLTQSPRAISRMLAVVASDLAMLSLLMHVAFLAVLTA GLLLPGARARLFGGFLGLLAASATGVALYYFVLPNVLLFGLYLALILNGLWRGELNWN LGKTNAADRLFGLVGLIFGFWYLHWVQSPIMLNALLVSPLGVLNCPTMLTISGFLCLT SQRPPVLELVSGVVCVYFGLFGIFQLSAYVDVALVACGAYQLARLAITARQGAALESG RLGKA" gene complement(1912070..1912146) /locus_tag="Deba_R0031" /db_xref="GeneID:9494163" tRNA complement(1912070..1912146) /locus_tag="Deba_R0031" /product="tRNA-Pro" /db_xref="GeneID:9494163" gene complement(1912189..1913397) /locus_tag="Deba_1699" /db_xref="GeneID:9494164" CDS complement(1912189..1913397) /locus_tag="Deba_1699" /note="KEGG: sfu:Sfum_4024 hypothetical protein; SPTR: A0LQI8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807661.1" /db_xref="GI:302343132" /db_xref="GeneID:9494164" /translation="MPQPSPPARLLWDSSGLWGLMALESARLLGLPLEPITAAEIIAG HLQGARLLVAPGGWPALKLAALGPAGVEGVRAFVNGGGCYLGFCGGAGLALAGDGGLG LLPLGRDRGGGRLPSASGPIQVSAPDGAAAHALWRGMDGRAVFHVWFPGQFARPQGAE VDILAVYDQPMPLFHCADVAVGGLDAQALAGLERQYGLRLDPGVLLGQPAVIGAHFGA GKVIASYPHLDTTGDGPGGLALQNLWRFWAGIDGPAAPDERPAALPSPEAARLAAEAW DLWQLGADMGLWRARHPVMPLWRRGARGLEFWSLTRMLAFVARHADTRLARAPFWPSL VESVEALLRDGPTALAAQAALLVGRAATPAQAALHEQWFPAPRRVGGGFKLASDFIER AALLVARRAG" gene complement(1913460..1914440) /locus_tag="Deba_1700" /db_xref="GeneID:9494165" CDS complement(1913460..1914440) /locus_tag="Deba_1700" /note="COGs: COG2025 electron transfer flavoprotein subunit alpha; InterPro IPR014730:IPR014731:IPR001308:IPR014729; KEGG: dal:Dalk_4506 electron transfer flavoprotein subunit alpha; PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; SPTR: B8FCM2 electron transfer flavoprotein subunit alpha; PFAM: electron transfer flavoprotein domain; electron transfer flavoprotein FAD-binding domain" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein subunit alpha" /protein_id="YP_003807662.1" /db_xref="GI:302343133" /db_xref="GeneID:9494165" /translation="MPQRIVVIVESHSGRIAPASLEAITCAARLQELSPAPILGITLG QDAWPTAQLLAAEHGLDALAVEAEGLVGYSAEAWLALLPELLGQLAARWVLMAATSQG QDLGPALAARLNAACIGGARGLEADEDGPLFVREVHGGKLLQRLRPLSASAVVLVQPG FFAPHLAGAGPAGQATRQRMAAVARRTADLPAAGQSQAGASLADAEVIVAAGRGLGKP ENLSLMRDLAALFPRSAVAGSRPVCDDGWLEYRWQVGVTGQTVSPKLYIACGISGASQ HVAGMRGAGLVVAINNDPQAAIFNEADVCVVEDVVQFTPALIASLRALKG" misc_feature complement(1913922..1914431) /locus_tag="Deba_1700" /note="The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF; cd01985" /db_xref="CDD:30172" misc_feature complement(1913472..1914428) /locus_tag="Deba_1700" /note="Electron transfer flavoprotein, alpha subunit [Energy production and conversion]; Region: FixB; COG2025" /db_xref="CDD:32208" misc_feature complement(order(1914126..1914137,1914141..1914146, 1914150..1914155,1914312..1914314,1914381..1914383, 1914390..1914392,1914414..1914419)) /locus_tag="Deba_1700" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:30172" misc_feature complement(1913589..1913825) /locus_tag="Deba_1700" /note="Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766" /db_xref="CDD:189709" gene complement(1914470..1915243) /locus_tag="Deba_1701" /db_xref="GeneID:9494166" CDS complement(1914470..1915243) /locus_tag="Deba_1701" /note="COGs: COG2086 electron transfer flavoprotein subunit beta; InterPro IPR014730:IPR012255:IPR014729; KEGG: dal:Dalk_4507 electron transfer flavoprotein alpha/beta-subunit; PFAM: electron transfer flavoprotein alpha/beta-subunit; SPTR: B8FCM3 electron transfer flavoprotein alpha/beta-subunit; PFAM: electron transfer flavoprotein domain" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein alpha/beta-subunit" /protein_id="YP_003807663.1" /db_xref="GI:302343134" /db_xref="GeneID:9494166" /translation="MKILVCAKQVPDPQAHVEIDQNGSLTRPGQPRWQMNRYDEFAVE AAVAIKKARPGVTAEVISLGPPRTAAVLERAIGMGCDQGAQIITPEGLDLDARRTAAC LAGFAQGRGYDLILCGVMSEDAMQAQVGPMLAALLGWPWATAVVALELDAQGRGLELW REAEGGERHGLHAPLPAVVCVQSGLNKPRYPSLSNLLRAKGQEHARVDWADLPAPEPL VQISGLALPQRTRQGLFPQGDATAKAQALARILRDKALI" misc_feature complement(1914620..1915240) /locus_tag="Deba_1701" /note="The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714" /db_xref="CDD:30169" misc_feature complement(order(1914857..1914868,1914881..1914886, 1914890..1914895,1915055..1915057,1915127..1915129, 1915136..1915138,1915223..1915228)) /locus_tag="Deba_1701" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:30169" gene 1915692..1916396 /locus_tag="Deba_1702" /db_xref="GeneID:9494167" CDS 1915692..1916396 /locus_tag="Deba_1702" /note="COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dal:Dalk_0100 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: B8FKJ5 phosphoglycerate mutase; PFAM: phosphoglycerate mutase family" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase" /protein_id="YP_003807664.1" /db_xref="GI:302343135" /db_xref="GeneID:9494167" /translation="MGVIYFIRHGQASFASDNYDRLSGLGRRQSEILGQYLAETGMGF DAVYSGDMVRQMDTANIVLERLGHGGDELVIDPDLNEYSSFIILKALLPEMIADDPSL ERAVEGMYKDNRSFQKVYEKGMLRWVSTDRDIPGLGSWSGFHRRTQQAIRRIMAENQG SGRRVAVFTSGGPISSVMNMALGLDDEVTLRITWQIVNSSITACKFSGDRFFLWSFNS IAHLDQARDAALITYR" misc_feature 1915701..>1915934 /locus_tag="Deba_1702" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature <1915713..1916360 /locus_tag="Deba_1702" /note="bifunctional RNase H/acid phosphatase; Provisional; Region: PRK07238" /db_xref="CDD:180903" misc_feature order(1915713..1915718,1915851..1915853) /locus_tag="Deba_1702" /note="catalytic core [active]" /db_xref="CDD:132718" gene 1916422..1917630 /locus_tag="Deba_1703" /db_xref="GeneID:9494168" CDS 1916422..1917630 /locus_tag="Deba_1703" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764; KEGG: dal:Dalk_2466 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FF99 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003807665.1" /db_xref="GI:302343136" /db_xref="GeneID:9494168" /translation="MDFSISPKMQTILGMINEFVDKELIPMEHDFLTKEFSSLEPELE EKRRMVKEMELWAPMHPKDFGGMGLNLLEYGLVCEALARTPLGVYTFGCQAPDAGNAE ILHKYGTPEQKEKYLRPVINGEIRSCFSMTEVDLPGSNPVLMDSNAVLDGDEWVINGH KWYTSSADGSKFAIAMVKTEPDAAPHLQASMIIVPTDTPGFNLVRNIPVMGHTGDSWH SHAEILYQNCRVPAENLLGPRGMGFILAQERLGPGRIHHCMRWIGICNRCLELVLERA TTRPIAPGQVLADKQIIQTWIGEMAAQIQAARLMVLHCAWKMDTLGTKEAREEISLIK FYAAGVLQKVMDTALQVHGGLGMTDDTVIASFYRGERAARIYDGVDEVHKLSVAKRII KEYKAKKGQK" misc_feature 1916422..1917615 /locus_tag="Deba_1703" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1916440..1917600 /locus_tag="Deba_1703" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1916716..1916718,1916806..1916808,1916812..1916814, 1916908..1916910,1916914..1916916,1917544..1917552, 1917556..1917558,1917562..1917564) /locus_tag="Deba_1703" /note="active site" /db_xref="CDD:173838" gene 1917701..1918396 /locus_tag="Deba_1704" /db_xref="GeneID:9494169" CDS 1917701..1918396 /locus_tag="Deba_1704" /note="InterPro IPR009057:IPR011075:IPR001647:IPR012287; KEGG: dal:Dalk_2467 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FFA0 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003807666.1" /db_xref="GI:302343137" /db_xref="GeneID:9494169" /translation="MNFAEFNEMVSVSWVDMCQRVYEEHGESIRIKKGKTVAKNLPRI FEATLRISNQHGFQAMSMRALSRETGLSMGALYAYFSSKEELLELLQRAGRSMTMMIL GQCLEKVEGARERLRVAIEAHLFLSEAMQQWFYFSYMEAKHLGPEEKDKAMAGELQTE NMVAEIIRAGQAEGVFIATDAQLLAACGKALMQDWYVKRWKYAKRGVSVDQYARFVIE MVEAYCLAPAGRQ" misc_feature 1917830..1917970 /locus_tag="Deba_1704" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" misc_feature 1917836..>1918129 /locus_tag="Deba_1704" /note="transcriptional repressor BetI; Region: betaine_BetI; TIGR03384" /db_xref="CDD:132427" gene 1918422..1919489 /locus_tag="Deba_1705" /db_xref="GeneID:9494170" CDS 1918422..1919489 /locus_tag="Deba_1705" /note="COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR011009:IPR002575:IPR008271; KEGG: dol:Dole_1459 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: A8ZZB0 Aminoglycoside phosphotransferase; PFAM: phosphotransferase enzyme family" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_003807667.1" /db_xref="GI:302343138" /db_xref="GeneID:9494170" /translation="MDLTDSPADVRKGEELDPKVIDQYLRENISGLRGPLEIRQFPGG FSNLTYFVKYGDAEMVLRRPPFGTIPKSGHDMAREYRILRAIHPVFPYAPRPIVFCDD PAVMGCPFYVMERLHGFILRKHPPKGFHMDPKDARRFSERMVEVLYELHCVDYKAIGL GDLGNPDGYVRRQVEGWNARYRKARTPDVPDCEEIMQWLVEKMPPESDRKGIVHNDFK VDNLLLDPNDLTRIVGVLDWEMCTLGDQITDFGHMVAYWVEQGDPEEVHRMRQNCTTL DGMISRAEMIAYYSKLAKVDLSDFDYYYCFGLFRLLVILQQIYYRSYHGQTQDPRFKV LGFGAAVLERACRRVIDRSGL" misc_feature 1918449..1919444 /locus_tag="Deba_1705" /note="Predicted aminoglycoside phosphotransferase [General function prediction only]; Region: COG3173" /db_xref="CDD:32986" misc_feature 1918527..1919198 /locus_tag="Deba_1705" /note="Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: ACAD10_11_like; cd05154" /db_xref="CDD:88617" misc_feature order(1918554..1918556,1918566..1918568,1918599..1918601, 1918605..1918607,1918701..1918703,1918758..1918769, 1919067..1919069,1919079..1919084,1919088..1919090, 1919127..1919132,1919187..1919189) /locus_tag="Deba_1705" /note="putative active site [active]" /db_xref="CDD:88617" misc_feature order(1918554..1918556,1919067..1919069,1919187..1919189) /locus_tag="Deba_1705" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:88617" misc_feature order(1918566..1918568,1918599..1918601,1918605..1918607, 1918701..1918703,1918758..1918769,1919067..1919069, 1919079..1919084,1919088..1919090,1919127..1919132) /locus_tag="Deba_1705" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88617" gene 1919541..1920869 /locus_tag="Deba_1706" /db_xref="GeneID:9494171" CDS 1919541..1920869 /locus_tag="Deba_1706" /note="COGs: COG2006 conserved hypothetical protein; InterPro IPR007160; KEGG: dol:Dole_0364 hypothetical protein; PFAM: protein of unknown function DUF362; SPTR: A8ZT10 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807668.1" /db_xref="GI:302343139" /db_xref="GeneID:9494171" /translation="MSKHVVAVKKYQAPFDSVRETVELCDGLAKLPKGAKVVIKPNIV FWTTAVPFPKWGVITTSRVIEDIVKMLKDHGASEITIVEGSVTMNPKESAPTSEHAFE SLGYNELGRRYGVKAHSIFARPFEKVDLGDGVVLNFNTDIINCDFVVDIPVMKTHAQT LVSLGIKNLKGTIDVVSRRACHSPDPQKDLHFWVARLSDKMPPLLNLIDGLYTAERGP SFDGRMHRSDLLVASTDIFSADKVGSTLLGHQPAEVPHLVHYAKNHGRPLDLSDVEVV GESDLSALAKPHEAVFPYTADGSLPLPMAKMGVTGLSYKKYDTTMCTYCSGINGIVLS SIAMAWKGQPWDDVEVLTGKTMEPTPGKKHTILLGKCIYQAHKDNPNIQHMVAIKSCP PKPEQIVEALHSVGVNVDENIFKNANKMPGFFMNRYKDKPEFEEAHFQVK" misc_feature 1919541..1920317 /locus_tag="Deba_1706" /note="Uncharacterized conserved protein [Function unknown]; Region: COG2006" /db_xref="CDD:32189" misc_feature 1919646..1920281 /locus_tag="Deba_1706" /note="Domain of unknown function (DUF362); Region: DUF362; pfam04015" /db_xref="CDD:190830" gene 1920880..1921761 /locus_tag="Deba_1707" /db_xref="GeneID:9494172" CDS 1920880..1921761 /locus_tag="Deba_1707" /note="COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR016040:IPR008927:IPR006176:IPR006108:IPR 013328; KEGG: sth:STH2912 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: C1XLE8 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding protein" /protein_id="YP_003807669.1" /db_xref="GI:302343140" /db_xref="GeneID:9494172" /translation="MINDKVFVIGAGFMGGGIAQVCAQAGCQVWLMDQSSAALQKAQA GMAASLGRLHAKGLVSDAPAAVLARVTDCDDLAPAAEADWVIEVVPESEKLKLAIFAQ VDAIAPERAILASNTSSIPITRLAAATKRPQRFVGLHFFGPVPLMKLVEVVRGAQTSE QTMEAATAFCRALGQTPVRVRQDIPGFVMNRIFAAAFAEALKLVDDGVVTPWEADIGM RLGYGWSAGPFEIADNAGLDVHLLVSEFFKSVGEERIKEHSDLVRRMVAQGKLGRKSG EGFYRYDAAGKRLIPQD" misc_feature 1920892..1921752 /locus_tag="Deba_1707" /note="3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Region: FadB; COG1250" /db_xref="CDD:31442" misc_feature 1920892..1921422 /locus_tag="Deba_1707" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1921435..1921725 /locus_tag="Deba_1707" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" gene complement(1922089..1922856) /locus_tag="Deba_1708" /db_xref="GeneID:9494173" CDS complement(1922089..1922856) /locus_tag="Deba_1708" /note="COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: dol:Dole_3007 ABC transporter-related protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A8ZZ37 ABC transporter-related protein; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807670.1" /db_xref="GI:302343141" /db_xref="GeneID:9494173" /translation="MLEVKNIETLYGLIMALRGVSLQLEEHKITAILGSNGAGKSTLI KTIMGMLDDQPDKGTIELDGKRIDRKDTEDIVRMGLAFVPEGREVFNELTVLENLQMG AYTRSSAEAKKDIEWIFTLFPRLKERIKQLAGTLSGGEQQMVAIARALMMHPRILFLD EPSLGLSPLLTKEIFATIKQINQEAGTTILLVEQNANMALSVCHRGYVMENGRFVLDG TPEALMADKDVQEFYLGVKSEVSVKGFQRYKRKKHWR" misc_feature complement(1922149..1922856) /locus_tag="Deba_1708" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature complement(1922179..1922853) /locus_tag="Deba_1708" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature complement(1922734..1922757) /locus_tag="Deba_1708" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature complement(order(1922275..1922277,1922374..1922379, 1922602..1922604,1922731..1922739,1922743..1922748)) /locus_tag="Deba_1708" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature complement(1922602..1922613) /locus_tag="Deba_1708" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature complement(1922422..1922451) /locus_tag="Deba_1708" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature complement(1922374..1922391) /locus_tag="Deba_1708" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature complement(1922356..1922367) /locus_tag="Deba_1708" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature complement(1922269..1922289) /locus_tag="Deba_1708" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene complement(1922849..1923652) /locus_tag="Deba_1709" /db_xref="GeneID:9494174" CDS complement(1922849..1923652) /locus_tag="Deba_1709" /note="COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: dol:Dole_3008 ABC transporter-related protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A8ZZ38 ABC transporter-related protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807671.1" /db_xref="GI:302343142" /db_xref="GeneID:9494174" /translation="MPIFEIKNLSMVFGGLTALDNVSLSVEKGSTTAVIGPNGAGKTT LFNCISGLYKPSSGEVVFKGQRLTDKKPHQIANLGVGRTFQNIELFNNMTTLENLMLG RHMHMKTGLWASCTWWRRGSKACRLEIDHRARVERIIDFLDLQSARNRFVGGLPYGTQ KVVELGRALATEPELLLLDEPVAGMNLEEKQDLLFWLQDIKDQFGVTLLIIEHDMRVV MEISDKVMVLNYGKPIAYGAPDEVQKNPDVLAAYIGDEQAAAQAGGQHA" misc_feature complement(1922891..1923652) /locus_tag="Deba_1709" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature complement(1922909..1923640) /locus_tag="Deba_1709" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature complement(1923524..1923547) /locus_tag="Deba_1709" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature complement(order(1923014..1923016,1923113..1923118, 1923398..1923400,1923521..1923529,1923533..1923538)) /locus_tag="Deba_1709" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature complement(1923398..1923409) /locus_tag="Deba_1709" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature complement(1923161..1923190) /locus_tag="Deba_1709" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature complement(1923113..1923130) /locus_tag="Deba_1709" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature complement(1923095..1923106) /locus_tag="Deba_1709" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature complement(1923008..1923028) /locus_tag="Deba_1709" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene complement(1923753..1923911) /locus_tag="Deba_1710" /db_xref="GeneID:9494175" CDS complement(1923753..1923911) /locus_tag="Deba_1710" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807672.1" /db_xref="GI:302343143" /db_xref="GeneID:9494175" /translation="MKYALTQALLPLVSLGLIALTWAVDRALSPGAKADCRKGSAAAR SKPTAPRE" gene complement(1923964..1924839) /locus_tag="Deba_1711" /db_xref="GeneID:9494176" CDS complement(1923964..1924839) /locus_tag="Deba_1711" /note="COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dol:Dole_3010 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A8ZZ40 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_003807673.1" /db_xref="GI:302343144" /db_xref="GeneID:9494176" /translation="MLGQLLVSGIAIGATYALMALAMVIIYKTSEVLNFAQGDMAMLS AFVSYSLLENMGYGFFISFSAAIVFAFLLGAFMEYAFLRRAKNPNVLGMVIITLGLQM IIYGLASWKWGADQKDFPFPVSDFDVHDLGGGVVISDLNLVTMVVAIVLMLALFLFFR YTKAGVAMKATQQNAPVARLMGIRVNRILMMTWGISSVIGAAAAFLIASTDTLDPNLM WTPQLKGFSAAVLGGMTSLVGPVVGGFILGVLENLFGGYVSVEFKSVVAFGVIVLILC VKPSGLFAKHYVRKV" misc_feature complement(1923991..1924815) /locus_tag="Deba_1711" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature complement(1924258..1924314) /locus_tag="Deba_1711" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene complement(1924876..1925925) /locus_tag="Deba_1712" /db_xref="GeneID:9494177" CDS complement(1924876..1925925) /locus_tag="Deba_1712" /note="COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dol:Dole_3011 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A8ZZ41 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_003807674.1" /db_xref="GI:302343145" /db_xref="GeneID:9494177" /translation="MEMKRDYYEDLRLLDSGAQWFWFIALIVALGVFPLFGDSYQIYT VNQMAINVIVALGLNLLVGYTGQISLGHAGFFAIGAYGTLVMMIKLGLPFVVALPLAG LLSALFGFLLGLPALRLEGPYLAIATLGFGLTITQILGRIEYFGGHMGIQAPPLEIFG WTATSDAARYAVIMPIAVIMALAMRNLIKTRVGRAFVAIRDSEIAAECIGVNITYYKT LAFAVSAFFTGIAGGLMAFVLGFINPHTFNLMTSVLFLSMVVVGGLGSILGSVMGAVL ITYLGQELAQISELPVIGHALMELSQQFLSINGLPNVQFVIFGLIMVLIVIFEPLGLY GFWIRTKIYWRTWPF" misc_feature complement(1924921..1925784) /locus_tag="Deba_1712" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature complement(1925260..1925316) /locus_tag="Deba_1712" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 1926638..1927345 /locus_tag="Deba_1713" /db_xref="GeneID:9494178" CDS 1926638..1927345 /locus_tag="Deba_1713" /note="InterPro IPR013424:IPR011449; KEGG: dba:Dbac_2542 hypothetical protein; PFAM: protein of unknown function DUF1555; SPTR: C7LS72 Putative uncharacterized protein; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM exosortase interaction domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807675.1" /db_xref="GI:302343146" /db_xref="GeneID:9494178" /translation="MRKTALIIIAVMAALTMASSALASTIEISYELGYTAKVKVRNNV NQGWKDKEAYTAEFDVTMNGQSGYTGYCVDIFQNASSGVFTDIAQSDFGLEYKRAAYL MDQYAMGLNDDEPVDGYSRKATITALSAAIWEVTHTGMHVGRPDRFDQFTFWYSNTDT WNVNLLYASMINDVMTQDLSNYVFQNTYTVVTNDQLQNLIVATANQSSNTPEPASLVL LGSALGLGGLALRRRRS" gene 1928265..1928402 /locus_tag="Deba_1714" /db_xref="GeneID:9494179" CDS 1928265..1928402 /locus_tag="Deba_1714" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807676.1" /db_xref="GI:302343147" /db_xref="GeneID:9494179" /translation="MSETPQPQPQPDADLAGLLRRIRQEKPLEYRHLVALIRTMAKSD N" gene 1928497..1929789 /locus_tag="Deba_1715" /db_xref="GeneID:9494180" CDS 1928497..1929789 /locus_tag="Deba_1715" /note="InterPro IPR006444; KEGG: pap:PSPA7_5150 phage-related protein; PFAM: major capsid protein HK97; SPTR: A6VBQ1 Putative phage-related protein; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family" /codon_start=1 /transl_table=11 /product="major capsid protein HK97" /protein_id="YP_003807677.1" /db_xref="GI:302343148" /db_xref="GeneID:9494180" /translation="MSFKIHELREKRAALVAEMRSLTERPEGQGGDLSDGQERRFAEA KAEVAALERQIERQAFLDEADRRAAGVPVAGGDDRLAVECRRVSVLDAIALACDLPGR DVGRIRELQPELAKRAGLPIQGVALPLESMQERRTITTAAPEAGAGGHLIGTDHRPDQ FVDLLRDANPLTRLGVRNVQGLVGDVAIPRQIGAATAYWVGEGETITPSDLAFGQIRM SPKIVAAMAGWSRSMVLQATPDIDAIARRDLADRLGRALAMATIKGGGANEPTGVIGT SGLGTVDISGGLTWAKVLEFVEKIELANASAGGWLTTPSMVKALRSAPKEVDGSDVAV SADYLMDGPAALAGYPLVSSNLAPATLGSGGNEHALLFGDWSDVLIGSWGVLDILANP YATGAYEKGLILVRAMLHCDVAIRHAESFVLGRLAVGA" misc_feature 1928509..1929768 /locus_tag="Deba_1715" /note="phage major capsid protein, HK97 family; Region: major_cap_HK97; TIGR01554" /db_xref="CDD:162419" misc_feature 1928938..1929768 /locus_tag="Deba_1715" /note="Phage capsid family; Region: Phage_capsid; pfam05065" /db_xref="CDD:147312" gene 1929842..1930354 /locus_tag="Deba_1716" /db_xref="GeneID:9494181" CDS 1929842..1930354 /locus_tag="Deba_1716" /note="COGs: COG3740 Phage head maturation protease; InterPro IPR006433; KEGG: pap:PSPA7_5151 HK97 family phage prohead protease; PFAM: peptidase U35 phage prohead HK97; SPTR: A9FSW2 Prohead protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family" /codon_start=1 /transl_table=11 /product="phage prohead protease, HK97 family" /protein_id="YP_003807678.1" /db_xref="GI:302343149" /db_xref="GeneID:9494181" /translation="MKNHEFRSAAEFRATGRRLEGYAAVFDREARIADFTEVVRPGAF ADSLAGDVLALVDHDTSRLLARTRSGTLRLAEDSRGLAFSLDLPDTSLGRDVLALAER GDLGGCSFAFTVPAGGETWRGDRRELRRVNLHEISIVAAWPAYDGTTVQARSRCLRLA CARRWLETVR" misc_feature 1929884..1930294 /locus_tag="Deba_1716" /note="Caudovirus prohead protease; Region: Peptidase_U35; cl01521" /db_xref="CDD:163987" gene 1930411..1931516 /locus_tag="Deba_1717" /pseudo /db_xref="GeneID:9494182" gene 1931513..1931740 /locus_tag="Deba_1718" /db_xref="GeneID:9494183" CDS 1931513..1931740 /locus_tag="Deba_1718" /note="InterPro IPR010093:IPR009061; KEGG: lrl:LC705_01062 predicted ORF; SPTR: C7TI67 Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family" /codon_start=1 /transl_table=11 /product="DNA binding domain protein, excisionase family" /protein_id="YP_003807679.1" /db_xref="GI:302343150" /db_xref="GeneID:9494183" /translation="MTGRLYLRVAEAAAACGVSKRTLWSWVGQGLPAFKVGGVTLVSP DKLREWLENHAVDHGQTDKIVDEVLSGLGRN" misc_feature 1931528..1931674 /locus_tag="Deba_1718" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene 1931802..1931945 /locus_tag="Deba_1719" /db_xref="GeneID:9494184" CDS 1931802..1931945 /locus_tag="Deba_1719" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807680.1" /db_xref="GI:302343151" /db_xref="GeneID:9494184" /translation="MIAERWAKVKRFFGRLRRRWLERAVDRPFDRQASLALDRLLVKE GER" gene 1931942..1933816 /locus_tag="Deba_1720" /db_xref="GeneID:9494185" CDS 1931942..1933816 /locus_tag="Deba_1720" /note="InterPro IPR015330:IPR000276; KEGG: apt:APA01_26890 DNA recombinase RecA; PFAM: Bifunctional DNA primase/polymerase; SPTR: C6N3S3 Putative truncated Phage / plasmid primase P4; PFAM: Bifunctional DNA primase/polymerase, N-terminal" /codon_start=1 /transl_table=11 /product="Bifunctional DNA primase/polymerase" /protein_id="YP_003807681.1" /db_xref="GI:302343152" /db_xref="GeneID:9494185" /translation="MIEAAQRYASLGWAAIPVGADKRPLRPWAEYQTRRPEAGELADW FGKPGAMVGVVTGKVSNLLVVDADNSEAISRAEALLPDGLELPIATTPRGRHYYFAHR EGMKNAVGVMPAVDVRAEGGYVVAPPGPGREWLVAPWDCAPPELPAQLEDVVRARAKE RMLAGVKVDPGANLPQGERAPCSRYGRHALADELTKIALAGQGGRNRQINDSSFAVGQ LVGAGLLAEDGVRAALIGAGLALGLGQREVAATVASGLAAGIREPRNVDNVDNVDIVD TCGQVWTGVDRCGHLWTGVDTCGQDMAQRGRGDSVRFGGNLAAEISEWVANSTGSFTT ADVDREFGLVDRRDRKNRSMVLTRLIEEKKIKRDPRQAGRFHILASHLEFVDLASTDG QPFGLALPLGLDQMVSLPPKSIVVLAGQTNAGKTALALNILRDNIGRQELLYCMSEMG PQEYRQRVGAFGDPLDHWRAVRAASLASGFDDAIAAHNRDGLTVVDYLEERDGEYFKI ASDIRGVYDALGNGVAFVCLQKKTGATFGRGGEATAEKSRLYMALDVLTHARGRTVCA LKIVKAKAYPGRNPNGLERHFVIHHGWRLEPVSDWVRLDDRERAAYATKYEATLGRAA " misc_feature 1931978..1932397 /locus_tag="Deba_1720" /note="Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol). These primpol domains belong to the...; Region: Prim_Pol; cd04859" /db_xref="CDD:80309" misc_feature order(1932005..1932007,1932137..1932139,1932143..1932145, 1932227..1932229,1932287..1932289) /locus_tag="Deba_1720" /note="polymerase nucleotide-binding site; other site" /db_xref="CDD:80309" misc_feature order(1932008..1932010,1932020..1932022,1932308..1932310) /locus_tag="Deba_1720" /note="DNA-binding residues [nucleotide binding]; DNA binding site" /db_xref="CDD:80309" misc_feature order(1932098..1932100,1932137..1932139,1932143..1932145, 1932212..1932214,1932221..1932223,1932227..1932229, 1932287..1932289,1932308..1932310) /locus_tag="Deba_1720" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:80309" misc_feature order(1932137..1932139,1932143..1932145,1932227..1932229, 1932287..1932289) /locus_tag="Deba_1720" /note="primase nucleotide-binding site [nucleotide binding]; other site" /db_xref="CDD:80309" misc_feature 1933148..>1933321 /locus_tag="Deba_1720" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature order(1933196..1933201,1933211..1933219) /locus_tag="Deba_1720" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature order(1933199..1933201,1933211..1933219,1933271..1933273, 1933277..1933282) /locus_tag="Deba_1720" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" gene 1933816..1934196 /locus_tag="Deba_1721" /db_xref="GeneID:9494186" CDS 1933816..1934196 /locus_tag="Deba_1721" /note="InterPro IPR003615:IPR002711; KEGG: dvu:DVU1505 holin, PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Q72BX9 Holin, manually curated; PFAM: HNH endonuclease" /codon_start=1 /transl_table=11 /product="HNH endonuclease" /protein_id="YP_003807682.1" /db_xref="GI:302343153" /db_xref="GeneID:9494186" /translation="MSDWPYSTSRWRRLRLQVLRSEPLCRECRRAGKIVAATDVDHIK PVAYGGMPCDCNNLQPLCHSCHSKKTNAQDGGGWQRKHDRAVDAATGWPLGKDHWWNG DGAVGEKSLGADAHRPVCPIAEES" misc_feature 1933849..1934025 /locus_tag="Deba_1721" /note="HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins...; Region: HNHc; cd00085" /db_xref="CDD:28969" misc_feature order(1933930..1933932,1933936..1933944,1933948..1933950, 1933984..1933989,1933999..1934004,1934011..1934013, 1934023..1934025) /locus_tag="Deba_1721" /note="active site" /db_xref="CDD:28969" gene 1934202..1935821 /locus_tag="Deba_1722" /db_xref="GeneID:9494187" CDS 1934202..1935821 /locus_tag="Deba_1722" /note="COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: pap:PSPA7_5155 phage terminase, large subunit, PFAM: Terminase; SPTR: A6VBQ6 Phage terminase, large subunit, PFAM: Phage Terminase" /codon_start=1 /transl_table=11 /product="terminase" /protein_id="YP_003807683.1" /db_xref="GI:302343154" /db_xref="GeneID:9494187" /translation="MGRRGPKAGPLKTADTPREIGAHCFLWERPGLSRAARVIIFVES LPITSGMHAGRRFRLRPWQKRIVRALYRTRGGRRVVRKALLTLPRKNGKTALAAALAL AHLIGPEAEQRGQVYSAAADRDQASIIFAEMEAVIGAVPEFAARCNVQRFRKAIEDDV TGSVYHALSSDDRKAHGLSPSFVVYDELAQARTRHLFDNLDTGAGARREPLMVVISTQ SSDQHHVMTELVDYGRKLLDGVIEDETFLPIIYAAPPDADPWSEDVWRACNPALGDFR ALEEMRQFAAQAKRIPAKQAVFESLYLNRPTEVDGRFIAQADWNACAGPVDVEALRGR PCWAGLDLGSTTDLTALVLYFPEDGGAVLPFFWVPAENLDEREDNDRVPYRTWASQGL IETTPGRAIDRRAIAMRLAEVASRFDLKGVAYDRWRVEDLKVILADEGVELPLTPWGQ GFKDMAPAVDLLEAGILQRQIAHGGHPVLTWCASNVVVETDPAGGRKISKSRSREKVD GIVALVMAMGLHARAEKLVEYDFSHPMVINL" misc_feature 1934382..1935773 /locus_tag="Deba_1722" /note="Phage Terminase; Region: Terminase_1; pfam03354" /db_xref="CDD:112181" gene complement(1936497..1937546) /locus_tag="Deba_1723" /db_xref="GeneID:9494188" CDS complement(1936497..1937546) /locus_tag="Deba_1723" /note="InterPro IPR012337:IPR009057:IPR001584; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain" /codon_start=1 /transl_table=11 /product="integrase catalytic region" /protein_id="YP_003807684.1" /db_xref="GI:302343155" /db_xref="GeneID:9494188" /translation="MTTEKKVARRKLSLLELAGELSNVSRACKLMGYSRQQFYEIRRN FQTYGAQGLVDRLPGPKGPHPNRVEAEVEAAIMAYSLEYPTHGALRVSQQLALRGVQV SSGGVRGVWSRHEMLTRHERLLRLEQSVRAQDIQLSDEQIRALERFSPEFRDRHIEAR HTGALVAVDTFFVGALKGVGKVYLQSVIDCHSRHAWGRLYTSKLPVTAVHVLNEEVLP CFEAHDAVIETVLSDNGREFCGRPDQHPYELFLQLEGIEHRTTRVRRPQSNGFVERLH RTLLDEHFRIKGRQKWYETLDEMQADLDEYLRHYNHERAHQGRNMNGRTPSQAFLEGL PGRKKPKEKASQKAA" misc_feature complement(1936701..1937075) /locus_tag="Deba_1723" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 1937768..1938997 /locus_tag="Deba_1724" /db_xref="GeneID:9494189" CDS 1937768..1938997 /locus_tag="Deba_1724" /note="COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011010:IPR010998:IPR002104:IPR013762; KEGG: rxy:Rxyl_1592 phage integrase; PFAM: integrase family protein; SPTR: Q1AVM4 Phage integrase; PFAM: Phage integrase family" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_003807685.1" /db_xref="GI:302343156" /db_xref="GeneID:9494189" /translation="MGVVVREKDSGSGVWWVFVNEDGHRTSRKVGSKRLALEVAEKIK AKLVLRKCGLVAPEKVKLPLFRDYAQIWLEGFIKHTRRPATYERYRDVLKKYVTPKLG SLPLDQISRGQVRDLLLGIYSKGLSKASVCIVRDTISGVMGFAVDEELIPSNPVIGIT KRLNLGRDDGNTVEPMTHEEVALFLETCAKHYPERYPFFLTAFRTGMRLGELLALQWG DIDWHGRFIVVRRSFKGGYTTSTKTGKARRVDMSNQLFETLCALQTKRKREAVGAGRG ELAPLIFHKGGLPIAQNSARNHFKRILQKAGLREMRVHDIRHTFASLLLSAGQSPVYV KEQLGHSSISMTVDIYGHLIPSSNRDAVNQLDEAAPECTPRAPYETKNPVTHQDYGTI SFLVPKGRLELPHPYGY" misc_feature 1938287..1938841 /locus_tag="Deba_1724" /note="phiLC3 phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial (mainly gram positive) and phage integrases, including those similar to Lactococcus...; Region: INT_phiLC3_C; cd01189" /db_xref="CDD:29510" misc_feature 1938293..1938832 /locus_tag="Deba_1724" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature order(1938389..1938391,1938707..1938709,1938716..1938718, 1938785..1938787,1938815..1938817) /locus_tag="Deba_1724" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29510" gene complement(1938951..1939037) /locus_tag="Deba_R0032" /db_xref="GeneID:9494190" tRNA complement(1938951..1939037) /locus_tag="Deba_R0032" /product="tRNA-Leu" /db_xref="GeneID:9494190" gene 1939181..1940131 /locus_tag="Deba_1725" /db_xref="GeneID:9494191" CDS 1939181..1940131 /locus_tag="Deba_1725" /note="COGs: COG0196 FAD synthase; InterProIPR002606:IPR015865:IPR015864:IPR014729:IPR 001412; KEGG: dba:Dbac_2972 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; SPTR: C7LV43 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein RibF" /protein_id="YP_003807686.1" /db_xref="GI:302343157" /db_xref="GeneID:9494191" /translation="MIVLRGLEELRQKYPSPVVTIGNFDGVHLGHQALFAKARERALA LGGASLAMTFEPHPMRVLRPAVNLPLITPLEQKLQLIEAQGVDVALCVQFDAGFAALS ADDFVDKLLVARLRAAEVVVGYDFSFGHRGLGDLELLQQKGAQHGFAVHVVGPVLVDG RAVSSTRVRQEVGAGHLAEARKLLGRNYRIAGTVVSGHGRGAKVVGFATANIKVSDEL LPAEGVYAVLVQDDQGKLHKGVTNIGNNPTFADAQLSVETHLLDYHGDLYGKHIVVIF IEYLRGEQKFASADELKAQIAKDIQRAHCVLDQDLSRRQA" misc_feature 1939184..1940089 /locus_tag="Deba_1725" /note="bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627" /db_xref="CDD:180171" misc_feature 1939232..1939771 /locus_tag="Deba_1725" /note="FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064" /db_xref="CDD:185679" misc_feature order(1939244..1939255,1939262..1939264,1939271..1939273, 1939553..1939555,1939643..1939645,1939667..1939675) /locus_tag="Deba_1725" /note="active site" /db_xref="CDD:185679" misc_feature 1939727..1940089 /locus_tag="Deba_1725" /note="Riboflavin kinase; Region: Flavokinase; pfam01687" /db_xref="CDD:190069" gene complement(1940128..1941771) /locus_tag="Deba_1726" /db_xref="GeneID:9494192" CDS complement(1940128..1941771) /locus_tag="Deba_1726" /note="COGs: COG2262 GTPase; InterPro IPR016496:IPR005225:IPR002917:IPR006073; KEGG: drt:Dret_2283 GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; SPTR: Q1NSQ7 GTP-binding protein, HSR1-related; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain" /codon_start=1 /transl_table=11 /product="GTP-binding proten HflX" /protein_id="YP_003807687.1" /db_xref="GI:302343158" /db_xref="GeneID:9494192" /translation="MPKLIGSTQGLKPSQINRLNNLYRRRLPPAEVLLPEQARALAAL SHEIGRQIGLVVDRKGEVRQVAVGGPDSLPHIDASRMRHGRARLAGVALVHTALGPSG LSQADQTALPQRRWDYLAVLNVDDQGLPGLVRVAHLLPQPEDGQDVRLLRPFMAGQTP HDMAALVQSLEDEFARLAPPLDVRAQAAAILVSVTTGSRQLAEEHMDELAELARSAGL EVRGRVVQRRQRLDPRTLMGPGRLAEVLLLALRQGASVVVFDQDLSPGQAHNLALLTD SDIKVIDRTQLILDIFAQRAATREGKLQVEMAQLRYLMPRLTSRDDGLSRLTGGIGGR GPGETRLEIDRRRVRERLHRLEKDLQEVGKQRQRRRDQRKRGGAPVLSIVGYTNAGKS TLLNTLTGSSVLSEDRLFATLDPTTRRLRFPQEREVIVTDTVGFIRDLPKELRQAFAA TLEELAQADLLLHVADASNPMVEEQIAAVERTLDELDLTQAPTILVLNKIDKADPEAV TALVNRHQGWPVSALDPPSLRPLLAAIEGMAFGQNAGAV" misc_feature complement(1940164..1941207) /locus_tag="Deba_1726" /note="GTP-binding protein HflX; Region: GTP_HflX; TIGR03156" /db_xref="CDD:163162" misc_feature complement(1940164..>1940637) /locus_tag="Deba_1726" /note="HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual...; Region: HflX; cd01878" /db_xref="CDD:133279" misc_feature complement(1940596..1940619) /locus_tag="Deba_1726" /note="G1 box; other site" /db_xref="CDD:133279" misc_feature complement(order(1940203..1940211,1940269..1940271, 1940275..1940280,1940593..1940604,1940608..1940610)) /locus_tag="Deba_1726" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133279" misc_feature complement(1940515..1940556) /locus_tag="Deba_1726" /note="Switch I region; other site" /db_xref="CDD:133279" misc_feature complement(1940524..1940526) /locus_tag="Deba_1726" /note="G2 box; other site" /db_xref="CDD:133279" misc_feature complement(1940467..1940478) /locus_tag="Deba_1726" /note="G3 box; other site" /db_xref="CDD:133279" misc_feature complement(1940398..1940469) /locus_tag="Deba_1726" /note="Switch II region; other site" /db_xref="CDD:133279" misc_feature complement(1940269..1940280) /locus_tag="Deba_1726" /note="G4 box; other site" /db_xref="CDD:133279" misc_feature complement(1940203..1940211) /locus_tag="Deba_1726" /note="G5 box; other site" /db_xref="CDD:133279" gene complement(1941785..1943176) /locus_tag="Deba_1727" /db_xref="GeneID:9494193" CDS complement(1941785..1943176) /locus_tag="Deba_1727" /note="COGs: COG0305 Replicative DNA helicase; InterProIPR007692:IPR003593:IPR007693:IPR007694:IPR 016136; KEGG: sat:SYN_00640 replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: ATPase AAA; SPTR: Q2LUJ4 Replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase" /codon_start=1 /transl_table=11 /product="replicative DNA helicase" /protein_id="YP_003807688.1" /db_xref="GI:302343159" /db_xref="GeneID:9494193" /translation="MAQPGPGPRRVPPHDLEAEQGVLGGVLSQGEDVLAGIAASLKAD AFYDRRHAHIYSAMLTLYDKGRPVDLITITSRLRDDGRLDEVGGAAYLAELADIVLSP AHVDHYAELVRDKALLRAFIGAATEGIEEAFTNQGDPDMALEAAEKAIFQATQQRLNK SLLPMRDVVSSALAVIEARFKNKGQVLGVTTGFKALDRLTTGLQPGDLIIIAGRPSMG KTAFALNIAANAALRGGVPTAVFSLEMSAEQLGLRLLASEARVSGSKIRSGFLNQNQD WPNLTEAADRLSQAPIFIDDTPAITVLEMRSKARRLKSEHNLGLVLVDYLQLMRGRAN SDSREQEISDISRSLKALAKELDLPVVALSQLNRKVEERPNKRPILSDLRESGAIEQD ADVIAFIYRDKVYRQKSNKEDGDDAPVMPDDNIAEIIIGKQRNGPTGTVKLAFLDDLT KFEDLAHDDDFVQ" misc_feature complement(1941806..1943146) /locus_tag="Deba_1727" /note="replicative DNA helicase; Region: DnaB; TIGR00665" /db_xref="CDD:188070" misc_feature complement(1942835..1943146) /locus_tag="Deba_1727" /note="DnaB-like helicase N terminal domain; Region: DnaB; pfam00772" /db_xref="CDD:189711" misc_feature complement(1941842..1942591) /locus_tag="Deba_1727" /note="DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984" /db_xref="CDD:29985" misc_feature complement(1942517..1942537) /locus_tag="Deba_1727" /note="Walker A motif; other site" /db_xref="CDD:29985" misc_feature complement(order(1941842..1941844,1941875..1941877, 1941974..1941976,1942082..1942084,1942205..1942207, 1942517..1942522)) /locus_tag="Deba_1727" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29985" misc_feature complement(1942205..1942216) /locus_tag="Deba_1727" /note="Walker B motif; other site" /db_xref="CDD:29985" misc_feature complement(order(1941902..1941907,1941974..1941979, 1942061..1942087,1942160..1942168,1942187..1942192)) /locus_tag="Deba_1727" /note="DNA binding loops [nucleotide binding]" /db_xref="CDD:29985" gene complement(1943180..1943689) /locus_tag="Deba_1728" /db_xref="GeneID:9494194" CDS complement(1943180..1943689) /locus_tag="Deba_1728" /note="COGs: COG0359 ribosomal protein L9; InterPro IPR020594:IPR020069:IPR009027:IPR020070; KEGG: dde:Dde_1410 50S ribosomal protein L9; PFAM: ribosomal protein L9-like; SPTR: A4TZ49 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9, N-terminal domain; ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9" /codon_start=1 /transl_table=11 /product="ribosomal protein L9" /protein_id="YP_003807689.1" /db_xref="GI:302343160" /db_xref="GeneID:9494194" /translation="MQVILIKEVLGLGDPGELVEVKRGYARNFLVPQGLAVLATKKNM AAVEAERKRIAVQQAKEAARIRQEAAGVSGASVTIKVRAGEHGKLYGSVSTKEIAAAL AEAGHDIDRRRIMLDNPIKDLGKYPVKIKLHPQVIVEVSVTVEGVFAKDEQAEAAAGK EVEESQTEE" misc_feature complement(1943288..1943689) /locus_tag="Deba_1728" /note="50S ribosomal protein L9; Reviewed; Region: rplI; PRK00137" /db_xref="CDD:178893" misc_feature complement(1943546..1943689) /locus_tag="Deba_1728" /note="Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281" /db_xref="CDD:189922" misc_feature complement(1943285..1943512) /locus_tag="Deba_1728" /note="Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948" /db_xref="CDD:146531" gene complement(1943842..1944078) /locus_tag="Deba_1729" /db_xref="GeneID:9494195" CDS complement(1943842..1944078) /locus_tag="Deba_1729" /note="COGs: COG0238 ribosomal protein S18; InterPro IPR001648:IPR018275; KEGG: gur:Gura_3677 30S ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: A5G7R2 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; TIGRFAM: ribosomal protein S18" /codon_start=1 /transl_table=11 /product="ribosomal protein S18" /protein_id="YP_003807690.1" /db_xref="GI:302343161" /db_xref="GeneID:9494195" /translation="MVNKKRRFGRRKVCRFCADTTIKIDYKDPRTLRYFTTERGKIIP RRISGCCAKHQRELTLAIKRSRHIALLPFGSSYM" misc_feature complement(1943860..1944078) /locus_tag="Deba_1729" /note="Ribosomal protein S18; Region: Ribosomal_S18; cl00373" /db_xref="CDD:193792" gene complement(1944097..1944522) /locus_tag="Deba_1730" /db_xref="GeneID:9494196" CDS complement(1944097..1944522) /locus_tag="Deba_1730" /note="COGs: COG0360 ribosomal protein S6; InterPro IPR000529:IPR020814:IPR014717; KEGG: dat:HRM2_18640 RpsF; PFAM: ribosomal protein S6, bacterial-like; SPTR: C0QBV4 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; TIGRFAM: ribosomal protein S6" /codon_start=1 /transl_table=11 /product="ribosomal protein S6" /protein_id="YP_003807691.1" /db_xref="GI:302343162" /db_xref="GeneID:9494196" /translation="MRHYETIFIIDPELPEDECSAVVDKFKGILEKDGSEMVKVDLWG RRRLAYQVKKYTKGFFVLFEYGAKPAVVDELERNFKIDERVIRFLSVKLGDVFDQEAI AQAQAEAAAKASRRSAESSDDDDFDSRFSEEDTEEDSEE" misc_feature complement(1944244..1944522) /locus_tag="Deba_1730" /note="Ribosomal protein S6; Region: Ribosomal_S6; cl00414" /db_xref="CDD:193808" gene complement(1944594..1945058) /locus_tag="Deba_1731" /db_xref="GeneID:9494197" CDS complement(1944594..1945058) /locus_tag="Deba_1731" /note="InterPro IPR015797:IPR000086; KEGG: mav:MAV_1301 hydrolase, NUDIX family protein; PFAM: NUDIX hydrolase; SPTR: A0QCA8 Hydrolase, NUDIX family protein; PFAM: NUDIX domain" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_003807692.1" /db_xref="GI:302343163" /db_xref="GeneID:9494197" /translation="MTPPSLNLARPVMDVACAAIFRGGRLLLAQRQDNGLWELPGGKR RPSETMRQCLRREIIEELACRLTPLALLGLLRQRRAPGPDLALWAFGCRLIGPHEPRA LEHLALRWVRPAEADGLALCPADRLLLGLWRPPRGPISRNCLRRLDKSPGKW" misc_feature complement(1944684..1945022) /locus_tag="Deba_1731" /note="The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic...; Region: MutT_pyrophosphohydrolase; cd03425" /db_xref="CDD:72883" misc_feature complement(order(1944684..1944686,1944747..1944749, 1944804..1944806,1944876..1944881,1944888..1944890, 1944924..1944926,1944930..1944935,1945014..1945016, 1945020..1945022)) /locus_tag="Deba_1731" /note="active site" /db_xref="CDD:72883" misc_feature complement(order(1944684..1944686,1944804..1944806, 1944813..1944815,1944930..1944935,1945014..1945016, 1945020..1945022)) /locus_tag="Deba_1731" /note="8-oxo-dGMP binding site [chemical binding]; other site" /db_xref="CDD:72883" misc_feature complement(1944867..1944935) /locus_tag="Deba_1731" /note="nudix motif; other site" /db_xref="CDD:72883" misc_feature complement(order(1944876..1944881,1944888..1944890)) /locus_tag="Deba_1731" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:72883" gene complement(1945055..1946818) /locus_tag="Deba_1732" /db_xref="GeneID:9494198" CDS complement(1945055..1946818) /locus_tag="Deba_1732" /note="InterPro IPR019734:IPR001440:IPR011990:IPR013026; KEGG: sfu:Sfum_0684 hypothetical protein; PFAM: hypothetical protein; SPTR: A0LG31 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807693.1" /db_xref="GI:302343164" /db_xref="GeneID:9494198" /translation="MLICLAVLTGLWPCPPTALADSAPKSPYSLQTIDLAVSGRLIQL KSGSALALNPDVSFNVVRASTDAWFDFGLDYRLRSHPSYDLRAPHTLREILGEDKVYH VEAVALDVYKNGLPVGTVSLLVRPSSLDWLRRAQSVEALEDKILCMKKVWELTPGDEM VFQQLLGLLIEAHQYDQAVEMLKAALAEKDDPALQRKLADLYAKQDKPEQALALWSRL LPASPQDAQLLSDMAAAQEQLRRWPQAAESLDRLAGLQRGRLKAATLLRQAKALQLAG QTERAVEATSQAATADPQNVAVWNDLADQMGALGRRGQQLDVLTKAADLHPTDFILQQ RLATALLEAGRRDEALAQLERLAAMRPDDAAILLKMARLLDEKKDRKRLTELYDRLGK LRPDDPDINFNLGVLHLDAGRLDQAADKLAVVAKAKPDDLDVQEAYFEALASQKKWDQ AAEQAAAMFAANDAAKVAAIVYPGLAANRPDKLAAMLDKALEAKPAAKSLYEMRATLA LDREKPREAAKALAKAVEAFPDDLAMAMRLAELYEALGNDAKALALFEKILDKNADYP EAQEHYLQLKTRMLSNSDRKK" misc_feature complement(<1945094..>1946374) /locus_tag="Deba_1732" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" misc_feature complement(1946066..1946338) /locus_tag="Deba_1732" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(1946102..1946107,1946114..1946119, 1946126..1946131,1946207..1946212,1946219..1946224, 1946228..1946233,1946315..1946320,1946327..1946332, 1946336..1946338)) /locus_tag="Deba_1732" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1946072..1946074,1946084..1946086, 1946120..1946122,1946165..1946167,1946174..1946176, 1946186..1946188,1946222..1946224,1946264..1946266, 1946273..1946275,1946285..1946287,1946321..1946323)) /locus_tag="Deba_1732" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(1945733..1946026) /locus_tag="Deba_1732" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(1945790..1945795,1945802..1945807, 1945814..1945819,1945895..1945900,1945907..1945912, 1945916..1945921,1946006..1946011,1946018..1946023)) /locus_tag="Deba_1732" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1945751..1945753,1945760..1945762, 1945772..1945774,1945808..1945810,1945853..1945855, 1945862..1945864,1945874..1945876,1945910..1945912, 1945955..1945957,1945964..1945966,1945976..1945978, 1946012..1946014)) /locus_tag="Deba_1732" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(1946932..1948218) /locus_tag="Deba_1733" /db_xref="GeneID:9494199" CDS complement(1946932..1948218) /locus_tag="Deba_1733" /note="COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR005839:IPR006638:IPR013848:IPR007197; KEGG: sfu:Sfum_0166 RNA modification protein; PFAM: radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; SPTR: A0LEL6 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: RNA modification enzyme, MiaB family" /codon_start=1 /transl_table=11 /product="RNA modification enzyme, MiaB family" /protein_id="YP_003807694.1" /db_xref="GI:302343165" /db_xref="GeneID:9494199" /translation="MSAKRFCLHSLGCKVNQAEAAHLADELTALGWTRVPEARRGDLA VLLTCAVTASASRQSRQMARRLARVAGPESVVASGCGVQAEAQAYLAEGVIVVGRAEL AQLARIIDRQAWPEQGPPPPPDAGAFCMGALQPGELRGRGLLKVQDGCNAGCAYCIVP ATRGRPRSLPLAQAVAAFRGMAQAGAQEIVLTGIHLGRWGLDLAGKPRLAELLEAMLA ADDRPRLRLSSLESHEIEPRLVQLAAAEPRLCPHFHLPLQSGDDRVLKAMGRPYSAAQ YAQVVRDLAAALPSPCLGADVLVGLPGEDHAAHRQTLELLESLPISYLHVFPYSPRPG TRAVEMPGRPSGHEVGQRAAVLRRLGQAKHLAFLRSRIGRRLEVVVEGGGLGRSADYC LVTLEHGPPPGERLSVLAGELIETPRGPGLRGQPVA" misc_feature complement(1947925..1948206) /locus_tag="Deba_1733" /note="Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919" /db_xref="CDD:189770" misc_feature complement(1947151..1947798) /locus_tag="Deba_1733" /note="Radical SAM; Region: Elp3; smart00729" /db_xref="CDD:128968" misc_feature complement(1947271..1947789) /locus_tag="Deba_1733" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" gene complement(1948222..1949400) /locus_tag="Deba_1734" /db_xref="GeneID:9494200" CDS complement(1948222..1949400) /locus_tag="Deba_1734" /note="COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR015424:IPR004839:IPR015421:IPR015422:IPR 001176:IPR004838; KEGG: dal:Dalk_0567 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: B8FHI5 Aminotransferase class I and II; PFAM: Aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="aminotransferase class I and II" /protein_id="YP_003807695.1" /db_xref="GI:302343166" /db_xref="GeneID:9494200" /translation="MPIAAKIVDYIERASWIRAMFEVGAKLKAQVGAENVFDFSLGNP NLEPPAEFFEVARELIVNHQPGDHAYMPNGGFPAVRQTIAEHLRKQHGLPFDVDTILM TVGAAGAINITLKTILNPGDEVLVPAPLFMEYNFYIENHGGRMITAPTKADFSLDVEA MARAINEKTAAVIINNPNNPSGAVYSQAQIDALAEMLRQQSARIKRPIYLICDEPYRQ IIFDGLQAPSLFKAYDNSILVTSFSKSLSLPGERIGYAAVHPQLADKAQVVAGMTLCN RILGFVNAPGLQQRIVARLLDCQADMGQYAKKRDLICQVLDAAGFDYTRPGGTFYVFP KSPIADDVAFVRAAQEEYILVVPGVGFMGPGHFRIAFCCSDETIERSAPAFKRLRQRF " misc_feature complement(1948225..1949397) /locus_tag="Deba_1734" /note="aspartate aminotransferase; Provisional; Region: PRK06836" /db_xref="CDD:180720" misc_feature complement(1948231..1949289) /locus_tag="Deba_1734" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(1948645..1948647,1948669..1948674, 1948678..1948680,1948753..1948755,1948864..1948866, 1949008..1949010,1949080..1949088)) /locus_tag="Deba_1734" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(1948528..1948530,1948537..1948539, 1948645..1948653,1948774..1948776,1948978..1948980, 1949077..1949079)) /locus_tag="Deba_1734" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(1948669..1948671) /locus_tag="Deba_1734" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(1949556..1949846) /locus_tag="Deba_1735" /db_xref="GeneID:9494201" CDS complement(1949556..1949846) /locus_tag="Deba_1735" /note="KEGG: sfu:Sfum_2838 hypothetical protein; SPTR: A0LM64 Conserved hypothetical cytosolic protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807696.1" /db_xref="GI:302343167" /db_xref="GeneID:9494201" /translation="MKAGIVFTGTGPILILTSYASLSDPNLAAKLARKGVMKFIAHEL DPALVKARYGKQFEAISDELKRADDMRVLDYNGHNVFYNFAFEEMGPAIYRQ" gene complement(1949921..1950511) /locus_tag="Deba_1736" /db_xref="GeneID:9494202" CDS complement(1949921..1950511) /locus_tag="Deba_1736" /note="KEGG: ote:Oter_0976 hypothetical protein; SPTR: B1ZXP2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807697.1" /db_xref="GI:302343168" /db_xref="GeneID:9494202" /translation="MKKLFIAVATALACLSGAAAATADEIGDQIKRGLEQYENGNIGQ ALTELDFALSQMRQKQSEAVAAILPEAPDGWKAEKAKASAQEFMGAGAMATRVYRQTG GKAKASIEIVKLGQGLGAMLNPMMLQKVGGGKPVLVGGMKGALAAKGETGAELTISIS AEHILKISVTNSDDAEATAQDFAKAIDVKALQKAIQ" gene complement(1950557..1951537) /locus_tag="Deba_1737" /db_xref="GeneID:9494203" CDS complement(1950557..1951537) /locus_tag="Deba_1737" /note="COGs: COG2206 HD-GYP domain; InterPro IPR006674; KEGG: amc:MADE_03089 metal-dependent phosphohydrolase domain; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: B4RVV1 Metal-dependent phosphohydrolase domain; PFAM: HD domain" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_003807698.1" /db_xref="GI:302343169" /db_xref="GeneID:9494203" /translation="MAEQGAQPKLYPGFVYFSLRTLIPETLLPCDVYFEAFIERLGRT RLIPALKKGQPINGQWLDDLLEQGLTHSYAKQEDLEALQEYLFNKSRIELDNLSMEQR QELLYESALCSIKSAMMEPRNGRRLAVGVRTVRRLLDCVWDCDEARKSLLKVMTSDRN IFVHSLNCCLLGASFAHHLGWSQEQAEQLAVALFFHDLALVDNLDHGEQHEDINFDLN RENSDQFHPIRSRDYLSILPELSPQVLDTVQNHHENLDGTGYPRKTSANQLSVAARIA RIIDYYELHTSSAEGKALAPFLALRAMQTEYAHGMDQRLVAEFIRFLGKV" misc_feature complement(1950689..1951063) /locus_tag="Deba_1737" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature complement(order(1950698..1950700,1950947..1950952, 1951046..1951048)) /locus_tag="Deba_1737" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature complement(1950947..1950949) /locus_tag="Deba_1737" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene complement(1951617..1951763) /locus_tag="Deba_1738" /db_xref="GeneID:9494204" CDS complement(1951617..1951763) /locus_tag="Deba_1738" /note="KEGG: tko:TK0024 hypothetical protein; SPTR: Q5JED6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807699.1" /db_xref="GI:302343170" /db_xref="GeneID:9494204" /translation="MSRIKPPRQREVQCQKCKRTFKTSLLAVAYCPYCRAPVKLEPGF SPNR" gene 1951864..1952628 /locus_tag="Deba_1739" /db_xref="GeneID:9494205" CDS 1951864..1952628 /locus_tag="Deba_1739" /note="InterPro IPR005358:IPR002345; KEGG: dol:Dole_1894 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: A8ZSG1 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807700.1" /db_xref="GI:302343171" /db_xref="GeneID:9494205" /translation="MTILFDNQGAAPGETIGWRLAASSRVLAEIYATWDAEAAGEALA CRAGCGACCTDRVALGWAEARVLRDGLRAMGRHDLIEAIVERQPPPQARPRATTNQVA ALCLAGQEPPDDPAPAEPAGRCPLLGPDERCLAYVQRPLACRIMASRRRCRAGGEAVL GDWLITLGLCLSQLAEQCSAGEPYGLLSDVLARQTGQTGRPLLCCQDLPGLPAPPEHL ERLERVVGALMARPCLNGLPVGHWLGRLRVGAPRQA" gene 1952703..1953182 /locus_tag="Deba_1740" /db_xref="GeneID:9494206" CDS 1952703..1953182 /locus_tag="Deba_1740" /note="COGs: COG3086 Positive regulator of sigma E activity; InterPro IPR007359; KEGG: dol:Dole_2512 positive regulator of sigma E, RseC/MucC; PFAM: Positive regulator of sigma(E) RseC/MucC; SPTR: A8ZW82 Positive regulator of sigma E, RseC/MucC; PFAM: Positive regulator of sigma(E), RseC/MucC" /codon_start=1 /transl_table=11 /product="positive regulator of sigma E, RseC/MucC" /protein_id="YP_003807701.1" /db_xref="GI:302343172" /db_xref="GeneID:9494206" /translation="MTEQGYVRAVRGGMAMVETIQTEACSQCSSRGACQMMGGERMRV VPAINEAGAKEGQRVIIAARRSTVMGAGFLVYMVPVMALIGGAVVGKAYGPDYGFEPQ SAAVLLGVGLLAACWLAISRFSKRMAGNKNLAVRVIRIVKDTQDGGADAVDQCSAGV" misc_feature 1952721..1953125 /locus_tag="Deba_1740" /note="Positive regulator of sigma(E), RseC/MucC; Region: RseC_MucC; cl01178" /db_xref="CDD:186372" gene 1953151..1953609 /locus_tag="Deba_1741" /db_xref="GeneID:9494207" CDS 1953151..1953609 /locus_tag="Deba_1741" /note="InterPro IPR006016:IPR014729; KEGG: dol:Dole_0159 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZSQ6 UspA domain protein; PFAM: Universal stress protein family" /codon_start=1 /transl_table=11 /product="UspA domain protein" /protein_id="YP_003807702.1" /db_xref="GI:302343173" /db_xref="GeneID:9494207" /translation="MLWTSVLLAYDNSPTALRAVEYVGQMFSKVEGVKVTVFTVYEKI PEYDMVETPFTNKVRSNIEALRRDKAEVTAGLEEVKKHLCRMGFEDSQVTIQTMERKK SVAKDIVEMVRAGGFGTVVLGSHGQKGSIFGSIANDVLKSLKDVSVVAVA" misc_feature 1953166..1953603 /locus_tag="Deba_1741" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature order(1953175..1953183,1953268..1953270,1953514..1953519, 1953523..1953528,1953547..1953558) /locus_tag="Deba_1741" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(1953744..1954763) /locus_tag="Deba_1742" /db_xref="GeneID:9494208" CDS complement(1953744..1954763) /locus_tag="Deba_1742" /note="COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR006311:IPR019546:IPR003374:IPR017909; KEGG: dal:Dalk_5059 ApbE family lipoprotein; PFAM: ApbE family lipoprotein; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: B8FDU9 ApbE family lipoprotein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; ApbE family; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence" /codon_start=1 /transl_table=11 /product="ApbE family lipoprotein" /protein_id="YP_003807703.1" /db_xref="GI:302343174" /db_xref="GeneID:9494208" /translation="MKSTPKINRRSFLKLAGVAGAAAALPLASPAIGLAGLGRKQHVA QQTRMMMGTLVSITVVDASPALAQDAMLQAFASIDGLSPIFDRHNSGGLVATLNASGR IGEMPPALRQVLTLCQSVQRASNGAFDISVAPVVDAYKNSFAATGRAPSDEVIQRALD AMGGVQFSASGMSLTRQGAGVTLDGVAKGFMVDQGLAAAAKAGAKHVLINAGGDIGVL GDRGNGQPWRVAISDPDNPTTPKMVINMTQGAVATSGNYEVYFDSEKLYHHIVNPANG ACPRSDASVSVRAGSAAMADALSTACFVMEPKAARAFLAQGVGLDGLILTRQGQRFMT EGFVG" misc_feature complement(1953792..1954514) /locus_tag="Deba_1742" /note="ApbE family; Region: ApbE; cl00643" /db_xref="CDD:193897" gene complement(1954778..1956865) /locus_tag="Deba_1743" /db_xref="GeneID:9494209" CDS complement(1954778..1956865) /locus_tag="Deba_1743" /note="COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR010207:IPR009051:IPR007202:IPR001450:IPR 013027:IPR012285:IPR000759:IPR017896:IPR017900; KEGG: dal:Dalk_0215 dihydropyrimidine dehydrogenase (NADP(+)); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; SPTR: B8FMQ7 Dihydropyrimidine dehydrogenase (NADP(+)); TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Putative Fe-S cluster; 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit" /codon_start=1 /transl_table=11 /product="electron transport complex, RnfABCDGE type, B subunit" /protein_id="YP_003807704.1" /db_xref="GI:302343175" /db_xref="GeneID:9494209" /translation="MLIEALAIGGLGLASALGLGVAARIFAVEVDPLVQEIEEALPGA NCGGCGFAGCASAAVAIASGKAPANVCVGGGPEIGATIAKILGVEVSFREPQIALPDC TYGTDKAELKFNYDGVRDCRAAVLLAGGAKVCEIGCLGLGTCAKACPFGAITIGADNL PHIDPSLCTGCGTCERVCPKNIIHLSSSTDRILQFNALENCVAPCQATCPAQINIPGY IKAVAEGRYEDAVLIIKEHNPLPLVCGRVCPHPCEDACRRGLDGEPVNINHIKRFAAD YELNSGKRIKPLLLPSNGRKVAIIGGGPAGLTVAYYLVRLGYVPTIFEQQPKLGGMLR YGIPEYRLPKKILDWEIQGILELGVEARVNQKMGHDFTLQSLKDEGFEAIFVGPGCWA SRNMQLEGEDLQGVLPGTDMLIDRGLEKPTPVGEKVVIIGGGNTALDCARTCWRLGAK EVTVLYRRSRKEMPANDIEVEEGAHEGLNYKFLAAPTRLIGENGKLKALEYITMELGE PDASGRRRPVPKKGSETIIEVDNVIAAIGQFPDLAFLEGDSGLKVTRWNTIDADETLG QTSVPGIFAAGDAVSGAATVVAAIGGARKAARSIHLYLGGKAQGDPERWYKKPSDVNR RITQIVGAPEPGTRAKMRELTVSERANSFVEVELGLLEEDARREAQRCLQCGLICYKK AGDSASCAACAGK" misc_feature complement(<1956290..1956796) /locus_tag="Deba_1743" /note="ferredoxin; Validated; Region: PRK07118" /db_xref="CDD:180852" misc_feature complement(1956317..1956385) /locus_tag="Deba_1743" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature complement(<1956179..>1956364) /locus_tag="Deba_1743" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature complement(1955039..1956262) /locus_tag="Deba_1743" /note="dihydropyrimidine dehydrogenase subunit A; Provisional; Region: PRK11749" /db_xref="CDD:183296" misc_feature complement(<1955738..1955980) /locus_tag="Deba_1743" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(<1954841..1954954) /locus_tag="Deba_1743" /note="putative oxidoreductase; Provisional; Region: PRK12831" /db_xref="CDD:183780" gene complement(1956925..1957512) /locus_tag="Deba_1744" /db_xref="GeneID:9494210" CDS complement(1956925..1957512) /locus_tag="Deba_1744" /note="COGs: COG4657 NADH:ubiquinone oxidoreductase subunit RnfA; InterPro IPR011293:IPR003667; KEGG: pca:Pcar_0265 NADH:ubiquinone oxidoreductase, RnfA subunit-like; PFAM: RnfA-Nqr electron transport subunit; SPTR: Q3A7W6 electron transport complex protein rnfA; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit" /codon_start=1 /transl_table=11 /product="electron transport complex, RnfABCDGE type, A subunit" /protein_id="YP_003807705.1" /db_xref="GI:302343176" /db_xref="GeneID:9494210" /translation="MSFGDYLLFIVGAILVNNILLAKFLGNCPFLGVSKRMDTATGMS MAVIFVTTLAGMITWVVQYYMLVPLEIEYLQTIAFILVIAALVQLVEIIMQKTMPALY RALGIFLPLITTNCAVLGVAIINIGEEYDFVDTLVFSFSSAVGYSLALILFAGIRERF AMAPIPKVFEGTAIGLVTAGFLALAFSGFGGLVGH" misc_feature complement(1956979..1957503) /locus_tag="Deba_1744" /note="Rnf-Nqr subunit, membrane protein; Region: Rnf-Nqr; cl00597" /db_xref="CDD:186097" gene complement(1957509..1958147) /locus_tag="Deba_1745" /db_xref="GeneID:9494211" CDS complement(1957509..1958147) /locus_tag="Deba_1745" /note="COGs: COG4660 NADH:ubiquinone oxidoreductase subunit RnfE; InterPro IPR010968:IPR003667; KEGG: dol:Dole_2827 electron transport complex RsxE subunit; PFAM: RnfA-Nqr electron transport subunit; SPTR: A8ZY03 electron transport complex, RnfABCDGE type, E subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit" /codon_start=1 /transl_table=11 /product="electron transport complex, RnfABCDGE type, E subunit" /protein_id="YP_003807706.1" /db_xref="GI:302343177" /db_xref="GeneID:9494211" /translation="MALMKEFTKGFWEVLPPFRLVLGLCPTLAVTTSAENGYGMGLAT TFVLFGSNLIVSLLRKIIPSKVRIAAFIVVIASFVVIVELLMQAYVFGLYQQLGIFIP LIVVNCIILGRAEAFAAKNGPVASMLDGLGIGLGYTISLFALGAFREILGSGTLTLVA KAGLVFNIMGEGYEPFTFMVRAPGAFVGLGLMLGLINYISVKNEARKRRALS" misc_feature complement(1957518..1958147) /locus_tag="Deba_1745" /note="Rnf-Nqr subunit, membrane protein; Region: Rnf-Nqr; cl00597" /db_xref="CDD:186097" gene complement(1958161..1958736) /locus_tag="Deba_1746" /db_xref="GeneID:9494212" CDS complement(1958161..1958736) /locus_tag="Deba_1746" /note="COGs: COG4659 NADH:ubiquinone oxidoreductase subunit RnfG; InterPro IPR010209:IPR007329; KEGG: drt:Dret_0530 electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; SPTR: C8WYR1 electron transport complex, RnfABCDGE type, G subunit; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit" /codon_start=1 /transl_table=11 /product="electron transport complex, RnfABCDGE type, G subunit" /protein_id="YP_003807707.1" /db_xref="GI:302343178" /db_xref="GeneID:9494212" /translation="MRDIIKMAVVLTVICALSGLTLALVHDVTKEPIEYAMLKNVKEP AVMAVISGFDNDPIKDLVKIPIGKDKKGKDAFLMVFPAKKGGKTFAMAFETAAKGYHG DIGVMVGVDAEKNEVTGVSIVSHSETPGLGARITETDFTESFQGKSLENELTKDDINA LSGATLSTNGVVAAVNNARTLFEQHRDQMLQ" misc_feature complement(1958203..1958715) /locus_tag="Deba_1746" /note="FMN-binding domain; Region: FMN_bind; cl01081" /db_xref="CDD:194030" gene complement(1958729..1959757) /locus_tag="Deba_1747" /db_xref="GeneID:9494213" CDS complement(1958729..1959757) /locus_tag="Deba_1747" /note="COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD; InterPro IPR011303:IPR004338; KEGG: tmz:Tmz1t_2992 electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; SPTR: C4KB15 electron transport complex, RnfABCDGE type, D subunit; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit" /codon_start=1 /transl_table=11 /product="electron transport complex, RnfABCDGE type, D subunit" /protein_id="YP_003807708.1" /db_xref="GI:302343179" /db_xref="GeneID:9494213" /translation="MSKQLLTVSTSPHMLGGMSVRSMHVEYIIALIPALATGVYYFGW PALLTVLLATGSAVVCELALTKLAKQPTKLDDLHAVVMGLLLGLILPPVVAGLEDACP WWIPVVGGALAVGLGKVLFGGIGAYPMNPVLIAWAALALSWPEHTMAFLDPMPWGTED PEWVVSTAPLVEFKNDIGNMLSYEMANLWSGMYPSAVGAGGSWALLLGGVYLIIRRIV PWQIPLGVLAGLIGMALLATYTDSRIVEMELETFNDHWNVALFHMATGGLMITAFFLA PEPVSSPMTPWGMLLFGVGIGVMTVLVRHWGAPIDGAFYGVLIMNAATPLFDRIRPRV LGKVGSSA" misc_feature complement(1958744..1959742) /locus_tag="Deba_1747" /note="RnfE family; Region: NQR2_RnfD_RnfE; cl00779" /db_xref="CDD:186185" gene complement(1959757..1961121) /locus_tag="Deba_1748" /db_xref="GeneID:9494214" CDS complement(1959757..1961121) /locus_tag="Deba_1748" /note="COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC; InterProIPR010208:IPR009051:IPR011538:IPR019554:IPR 001450:IPR017896:IPR017900; KEGG: tex:Teth514_0079 electron transport complex, RnfABCDGE type, C subunit; PFAM: Soluble ligand binding domain; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C6Q6M5 electron transport complex, RnfABCDGE type, C subunit; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit" /codon_start=1 /transl_table=11 /product="electron transport complex, RnfABCDGE type, C subunit" /protein_id="YP_003807709.1" /db_xref="GI:302343180" /db_xref="GeneID:9494214" /translation="MSVAQWFKGISLRRPPAPAASPSEAPAPERVYLPLRQHRGDVCE PQVQPGDQVALGQIIGSSESIEAALVHATVSGKVEQIIDISDAEGHPTPTVVIQNDGK DAWAAPDADALIIDNADQVLQTKPSHLLKAIRKAGLVRAAAHGLPMQAELSPPMAPRS YLFMTGIPVVRTIDTLIVKAVDADQPIIPNQAGLAGFGAELEIGIAAVARICGAQKVI IAAAKGADLGQLPQIAAAREWSISQVNGCHYPFGLDSMIINALTGREVPTPYGEPRDV GVLIEPLATILDVGRVLRTGRPVIDRLFTVAGDVAKPQTFRARLGTPMAEMIKAAGGA SGQPGKVIIGGPMMGMAHFDLNTPVTKESDGLFVISLAKVQTFSGEPCIHCGRCVQVC PVNLIPAELGKMCQYGHYEEAADKDLMHCIECGCCAYVCPAKRPMVHLLRLGKTEVLA RRAE" misc_feature complement(1959766..1961034) /locus_tag="Deba_1748" /note="C subunit; Region: rnfC; TIGR01945" /db_xref="CDD:162617" misc_feature complement(1960282..>1960512) /locus_tag="Deba_1748" /note="Respiratory-chain NADH dehydrogenase 51 Kd subunit; Region: Complex1_51K; pfam01512" /db_xref="CDD:144926" misc_feature complement(1960069..1960215) /locus_tag="Deba_1748" /note="SLBB domain; Region: SLBB; pfam10531" /db_xref="CDD:192616" misc_feature complement(<1959799..>1959978) /locus_tag="Deba_1748" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" gene complement(1961309..1962412) /locus_tag="Deba_1749" /db_xref="GeneID:9494215" CDS complement(1961309..1962412) /locus_tag="Deba_1749" /note="COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR001789:IPR003661:IPR003594:IPR011006:IPR 009082:IPR004358:IPR005467; KEGG: ote:Oter_3856 response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: B1ZZ58 Sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="response regulator receiver sensor signal transduction histidine kinase" /protein_id="YP_003807710.1" /db_xref="GI:302343181" /db_xref="GeneID:9494215" /translation="MVLRAQPHVLVVDDDESAREAATILLGRWGNRVSVAECGEAGLD VVRRDPPDLCLVDLQMPGISGLDVLRAVKGIDADIQCVMVTGFATLRSAIDALQEGAY DFLAKPFSPDELKRAVDRALERRFLALETKSLREEKDRMEANFITMVSHQMRSPLAAV RQLMEVAATEALGPLPADYHDIVSRAARRMDELLQSIGAWLNMSQIEAKGVAERMEKA EVKPFIDLLTKRVEIEAMAAGQYLRVEHPEGGGAATIEADLASLMDALYNIASNAVKY NRVGGEVRIVWRADDYQVDVEISDQGPGIPEVELPYLFDDFFRSRKPELRAKPGTGLG LAIARRVVKAHGGEIAVRTKADEGTTFIISLPR" misc_feature complement(1962056..1962388) /locus_tag="Deba_1749" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1962047..1962385) /locus_tag="Deba_1749" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1962089..1962094,1962101..1962103, 1962158..1962160,1962218..1962220,1962242..1962244, 1962371..1962376)) /locus_tag="Deba_1749" /note="active site" /db_xref="CDD:29071" misc_feature complement(1962242..1962244) /locus_tag="Deba_1749" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1962218..1962226,1962230..1962235)) /locus_tag="Deba_1749" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1962086..1962094) /locus_tag="Deba_1749" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1961789..1961992) /locus_tag="Deba_1749" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cl00080" /db_xref="CDD:153499" misc_feature complement(1961318..1961629) /locus_tag="Deba_1749" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1961330..1961332,1961336..1961341, 1961354..1961356,1961360..1961362,1961408..1961419, 1961498..1961503,1961507..1961509,1961513..1961515, 1961519..1961521,1961588..1961590,1961597..1961599, 1961609..1961611)) /locus_tag="Deba_1749" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1961597..1961599) /locus_tag="Deba_1749" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1961411..1961413,1961417..1961419, 1961501..1961503,1961507..1961509)) /locus_tag="Deba_1749" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(1962428..1962820) /locus_tag="Deba_1750" /db_xref="GeneID:9494216" CDS complement(1962428..1962820) /locus_tag="Deba_1750" /note="COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006; KEGG: mpd:MCP_2581 response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FJ25 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807711.1" /db_xref="GI:302343182" /db_xref="GeneID:9494216" /translation="MAKILIIDDDPDFTLATKAILTAAGHQVVAAPSGKVGLDMVKDE EPDLIILDIMMDSIFEGFSVTTTLRGTPEYMDYRQIPVLMCSGVKKMTGERFHMPKEA DLAKGDDYLDKPFTAEQLLGKVNKLLGK" misc_feature complement(1962446..1962811) /locus_tag="Deba_1750" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1962437..1962808) /locus_tag="Deba_1750" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1962479..1962484,1962491..1962493, 1962563..1962565,1962638..1962640,1962665..1962667, 1962794..1962799)) /locus_tag="Deba_1750" /note="active site" /db_xref="CDD:29071" misc_feature complement(1962665..1962667) /locus_tag="Deba_1750" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1962638..1962643,1962647..1962649, 1962653..1962658)) /locus_tag="Deba_1750" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1962476..1962484) /locus_tag="Deba_1750" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(1962946..1963521) /locus_tag="Deba_1751" /db_xref="GeneID:9494217" CDS complement(1962946..1963521) /locus_tag="Deba_1751" /note="InterPro IPR016181:IPR000182; KEGG: bja:blr2886 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: A0Y7P0 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_003807712.1" /db_xref="GI:302343183" /db_xref="GeneID:9494217" /translation="MAGQAVKLMLNNGDQVDCLWLDRQNTAPLLELAGRVDSRTLGRH RQDLTDRAALEHWLEGLGQGGLSVLAALDSQAGGRTAGYIYLQKGQKSSAHIGEVEAF IHPDYRDLGLGSALLRFMAEYAEGQGLMFLKVDLPAERRDLVTAYKRLGFQIKAILED YRVDRSGQPYDVIIMIKRLAVSGNRELLYSY" misc_feature complement(1962973..1963407) /locus_tag="Deba_1751" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene 1963796..1965694 /locus_tag="Deba_1752" /db_xref="GeneID:9494218" CDS 1963796..1965694 /locus_tag="Deba_1752" /EC_number="1.2.7.8" /note="COGs: COG4231 indolepyruvate ferredoxin oxidoreductase alpha and subunit betas; InterProIPR017721:IPR009014:IPR011766:IPR001450:IPR 017896:IPR017900; KEGG: dal:Dalk_5039 indolepyruvate ferredoxin oxidoreductase, subunit alpha; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: B8FDS9 indolepyruvate ferredoxin oxidoreductase, subunit alpha; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit alpha; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit alpha" /codon_start=1 /transl_table=11 /product="indolepyruvate ferredoxin oxidoreductase, subunit alpha" /protein_id="YP_003807713.1" /db_xref="GI:302343184" /db_xref="GeneID:9494218" /translation="MDDLLSPKGGAQKLLLGNEAIVRGALEAGLAFATCYPGTPSSEV PDTLHRLMRQSPEQVKYHFEYSTNEKVALETASGAAAAGLRTLCTMKHVGLNVAADPL MTLAYSGVRAGMVILTADDPSLFSSQNEQDNRYYARQSGLPMLEPADPAQAKAMTKYA MELSEQLETPVLLRTTTRVNHTRGAVGLDDLPEVKTKAHFVKEPTRFVGVPAVSRNLH LRLLRIYEKAQALSEASPFNSVKGKGRLGVVACGVCVAYVADAVKDLDAAGQIKIFNL GFSWPLPEKKLARFLKSVDQVLVVEELEPLVENALRAIAQEKGIAVKISGKTPGAIPA VSVDVRAPEVFTRAYEYNPRLVRQTIAKAFKLKDNSPPVLDLSDRPALPGRPPNLCAG CPHRATYFAVKQAVGPEAVFTTDIGCYTLGMLPPISMADYLICMGSSVSSAGGIARAT DQKVVAFIGDSTFFHSGITGLVNAVHNRHNFTLVILDNGTTAMTGHQPHPGVSQGLAD DKTHVDIEKLVRGLGVEHVTTVKPFKVAASVKAIKEAADYPGVSVVISREICPLYGRR VAPRGRKPFRVDPGKCKNHRDCINTVACPAFYIAGDQPAINASQCIGCALCAQICPEN AITPVKEA" misc_feature 1963832..1965673 /locus_tag="Deba_1752" /note="indolepyruvate ferredoxin oxidoreductase, alpha subunit; Region: IOR_alpha; TIGR03336" /db_xref="CDD:163218" misc_feature 1963844..1964326 /locus_tag="Deba_1752" /note="Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034" /db_xref="CDD:132917" misc_feature order(1963889..1963894,1963910..1963912,1963922..1963924, 1963931..1963933,1963982..1963993,1964015..1964020, 1964024..1964032,1964039..1964041,1964045..1964047, 1964096..1964098,1964105..1964107,1964117..1964119, 1964198..1964203) /locus_tag="Deba_1752" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132917" misc_feature order(1963889..1963894,1963901..1963906,1963910..1963912, 1963928..1963933,1963982..1963993,1964015..1964020, 1964024..1964032,1964039..1964041,1964045..1964047, 1964096..1964098,1964105..1964107) /locus_tag="Deba_1752" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132917" misc_feature order(1963904..1963906,1964000..1964002) /locus_tag="Deba_1752" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132917" misc_feature order(1963910..1963912,1964156..1964158) /locus_tag="Deba_1752" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:132917" misc_feature 1964945..1965475 /locus_tag="Deba_1752" /note="TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the...; Region: TPP_IOR_alpha; cd02008" /db_xref="CDD:48171" misc_feature order(1965101..1965103,1965170..1965181,1965257..1965259, 1965263..1965265) /locus_tag="Deba_1752" /note="TPP-binding site; other site" /db_xref="CDD:48171" misc_feature 1965605..1965676 /locus_tag="Deba_1752" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene 1965697..1966290 /locus_tag="Deba_1753" /db_xref="GeneID:9494219" CDS 1965697..1966290 /locus_tag="Deba_1753" /EC_number="1.2.7.8" /note="COGs: COG1014 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit gamma; InterPro IPR002869:IPR019752; KEGG: dal:Dalk_5038 indolepyruvate ferredoxin oxidoreductase; PFAM: pyruvate/ketoisovalerate oxidoreductase; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: B8FDS8 indolepyruvate ferredoxin oxidoreductase; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit beta" /codon_start=1 /transl_table=11 /product="indolepyruvate ferredoxin oxidoreductase" /protein_id="YP_003807714.1" /db_xref="GI:302343185" /db_xref="GeneID:9494219" /translation="MKTFRIVFVGVGGQGNLLASNLLGQAALDSGVPAVVSEIHGMAQ RGGVVESAVLLGGARSPIVSTGEADALVAFEPAEALRLLDKAGPKSLVITSLRPVPPF TVTTGQGKYPDPAAAVDYLRGKVARVIAFDGQELAERAMNPLSLNMVMLGALFAGAKL RVPVEAMKKIIRAQTKQRFVEANLLAFDLGYQAAAAA" misc_feature 1965697..1966287 /locus_tag="Deba_1753" /note="Pyruvate ferredoxin/flavodoxin oxidoreductase; Region: POR; cl00546" /db_xref="CDD:193862" misc_feature 1965712..1966272 /locus_tag="Deba_1753" /note="2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated; Region: PRK08537" /db_xref="CDD:181462" gene complement(1966387..1967013) /locus_tag="Deba_1754" /db_xref="GeneID:9494220" CDS complement(1966387..1967013) /locus_tag="Deba_1754" /note="COGs: COG1290 cytochrome b subunit of the bc complex; InterPro IPR016174:IPR005797:IPR016175; KEGG: sth:STH3148 menaquinol-cycothcome C reductase; PFAM: cytochrome b/b6 domain; SPTR: Q67JM0 Menaquinol-cytochrome C reductase; PFAM: cytochrome b(N-terminal)/b6/petB" /codon_start=1 /transl_table=11 /product="cytochrome b/b6 domain protein" /protein_id="YP_003807715.1" /db_xref="GI:302343186" /db_xref="GeneID:9494220" /translation="MAGPGFLEHLHPPRLPEGRIRVGHTFCLGGVAFLLFLALAGSGL LLMFHYTPTPTGAADFFAQEAGDLPFAWFFRRVHYLAGQGMVLAVLLHMARVLATGAH LPPRAANWLVGLGLLALTLAMDLSGYVLRWDGATRAAAAVVAGLLAEIPLVGEMLRGV LLGGPELGPAALLRFYVLHCLALPLLCLGLALYHFWRIRRDGRAIGGL" misc_feature complement(1966408..>1966872) /locus_tag="Deba_1754" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene complement(1967017..1967496) /locus_tag="Deba_1755" /db_xref="GeneID:9494221" CDS complement(1967017..1967496) /locus_tag="Deba_1755" /note="COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941:IPR005805:IPR017909; KEGG: sth:STH3146 plastoquinol--plastocyanin reductase; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Q67JM2 Plastoquinol--plastocyanin reductase; PFAM: Rieske [2Fe-2S] domain" /codon_start=1 /transl_table=11 /product="Rieske (2Fe-2S) iron-sulfur domain protein" /protein_id="YP_003807716.1" /db_xref="GI:302343187" /db_xref="GeneID:9494221" /translation="MKQSQSVDNPPRRRWLAWAVGATWAMLATAAGLGLAMALRLVGG GQGQARPPAPVSFDAADWPAVGQARARGGVALARDEAGFFALRLKCPHLGCQPTWRAD LGRFVCPCHGSSFAADGALLAGPAQRGLDILDVRRAASGALIVDPARPARPGQRLKA" misc_feature complement(1967065..>1967262) /locus_tag="Deba_1755" /note="Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1)...; Region: Rieske; cd03467" /db_xref="CDD:58538" misc_feature complement(order(1967152..1967154,1967158..1967160, 1967164..1967169,1967173..1967175,1967218..1967223, 1967227..1967229)) /locus_tag="Deba_1755" /note="iron-sulfur cluster [ion binding]; other site" /db_xref="CDD:58538" misc_feature complement(order(1967158..1967160,1967164..1967166, 1967173..1967175,1967218..1967223,1967227..1967229)) /locus_tag="Deba_1755" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:58538" gene 1967565..1967948 /locus_tag="Deba_1756" /db_xref="GeneID:9494222" CDS 1967565..1967948 /locus_tag="Deba_1756" /note="InterPro IPR005798; KEGG: afw:Anae109_0242 cytochrome b/b6 domain-containing protein; SPTR: A7H6W4 cytochrome b" /codon_start=1 /transl_table=11 /product="cytochrome b/b6 domain-containing protein" /protein_id="YP_003807717.1" /db_xref="GI:302343188" /db_xref="GeneID:9494222" /translation="MIEPMKAPMSTRETLAAKEGLAALLCLALLTALAVVYPLESVVE AAEGQAKAPWIFVGLQQLLRPLPPLWGGLLLPGAAFCFLAWLPWLSRRPPHAVPALGR PGFAELAAWAILAGWALLTAYGFFV" gene complement(1967930..1969723) /locus_tag="Deba_1757" /db_xref="GeneID:9494223" CDS complement(1967930..1969723) /locus_tag="Deba_1757" /note="InterPro IPR011031; KEGG: sse:Ssed_4024 hypothetical protein; SPTR: A8G0K5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807718.1" /db_xref="GI:302343189" /db_xref="GeneID:9494223" /translation="MSAAKTVILTALIALAICWAGPATANGCLGCHQGFVSPMPPSPA QGKVPDCLFCHGGDATAKALPQAHQGLRANPSTLDAADQTCGRCHPGWPEKVRRSPMA TNAGLINQTRYLWGAQPSPAPLWATRKVGPLAQLPQPDVAGGQAVDDLLRRRCLRCHL WSPGADMDGARRSAGCAACHAPTDDQGRKIHGHRLSKSPPVAQCLRCHASDCGAGAEY VGLTPADEHFTAHFAQIDPARPKLFNGRVWRETRPDLHHQAGLACIDCHVRAEVMGDG QIRQAALLHVGLRCQSCHGRPGQPPRQARTSHDQAMTNVSIKNGAALVRGKLSGKTLV APSLANGPDAPAAHLAPGHQRLACHACHGAANPAVWGLQVLLDTRPGPARWRDIAAQG DHQLWAMAWAADQAQAPKALDLLSGRPRDGVWVLSPFFRRREWRVHGQGPDGRTFLLR PRFQYVVTILDENGRPSVAGQIPSPGLGLAPWRPHNTRRPTVGCADCHGNAMALGLGL TFLRDGQPNQPPALAPELWLPRAEGLAMDGGWTKIVDLAGRPQQVMLVEGARPFAREL LRKLLRPGKQYIKWLLRDLDARAAEAQTKKP" gene complement(1969720..1971888) /locus_tag="Deba_1758" /db_xref="GeneID:9494224" CDS complement(1969720..1971888) /locus_tag="Deba_1758" /note="InterPro IPR011031; KEGG: gme:Gmet_0536 cycothcome C family protein; SPTR: Q39Y95 cycothcome C family protein" /codon_start=1 /transl_table=11 /product="cycothcome C family protein" /protein_id="YP_003807719.1" /db_xref="GI:302343190" /db_xref="GeneID:9494224" /translation="MAAVESKPTSRAIWALAYALAAALLLAAVALAWLRENDRPWQEQ IAAINARRGQRLERRLLAMGAPPTLARQRGQALADEPPRVIETRPHVSGRPERCLSCH RGIEQISPSHPVEAVGCVACHGGNGLGLTKQSAHQGLRGRNPSDLGQARASCGQTMAG AACHEGRQEPAANAVTRVERTIMSTMTGVLTSLRVSWGAQGDFTASLATAAVSDPEAP AQSDGQTVAVLRKIDAADPASLDFAGLANDHWRKFCARCHLRASRPDGHSVHGAGCAA CHGMRHASGRYLGADAAIADDEPGHAAYHRLLPTPPEENCRRCHNRSGRIGLNYRGWM EDESGRVPWPDGQPRQHLSGGRALRSLLPDIHAEKGLGCIDCHTSREIMGDGRIYQRM RFQTEIRCQTCHGGPGRPPQTGPADGAAAFELRHGPLKDAPTPTGDDFVLGVKGRPLS NARLIGDKVLLRSKTNPGQTHQAAIIAADPRHNLPGHQRLSCQACHSRWTPQCFGCHD LRGQGGQMWDFAADGPRPGVWSERRDVYRFLAPILGVDSRGQITPFTPGCQVSLSVLD QNGQPLPGQWMTRQKGGPAGGTVVSTPLAPHTTRLEVRPCQACHQNPRALGLGDGPMP LDGAGPESLDAPAQSGLNHGWAALTTVDGRPLQDQTHQGARPLNAAEIGRTLAFGRCL PCHFKPHDPVLQDPAKARQRIGPGGDLAAKHRLAEEKALR" gene 1971937..1972335 /locus_tag="Deba_1759" /db_xref="GeneID:9494225" CDS 1971937..1972335 /locus_tag="Deba_1759" /note="KEGG: sfu:Sfum_3363 hypothetical protein; SPTR: A0LNN4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807720.1" /db_xref="GI:302343191" /db_xref="GeneID:9494225" /translation="MNEQLKSLAQAMRAELERIPREMLQEDVARRALIRALAGAVEAM GLLPLMGWKPPRSTREAIDLVGVDAASAPPRVEMAFVVDPLVELPRLKTLEWLDCPHK VVVSFSSRADKVAQTSFFLGPQHIHLKLYD" gene complement(1972396..1972632) /locus_tag="Deba_1760" /db_xref="GeneID:9494226" CDS complement(1972396..1972632) /locus_tag="Deba_1760" /note="InterPro IPR001455; KEGG: bay:RBAM_005450 YrkF; PFAM: SirA family protein; SPTR: C8R0L0 SirA family protein; PFAM: SirA-like protein" /codon_start=1 /transl_table=11 /product="SirA family protein" /protein_id="YP_003807721.1" /db_xref="GI:302343192" /db_xref="GeneID:9494226" /translation="MADYTADEVLDARGLTCPMPILKTKKLLKNMKAGQILEIQGTDP GTRNDLPAFTSRSGDEYLGEEARDGYISFFVKKG" misc_feature complement(1972402..1972608) /locus_tag="Deba_1760" /note="SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-...; Region: SirA_YedF_YeeD; cd00291" /db_xref="CDD:48205" misc_feature complement(order(1972567..1972569,1972573..1972584, 1972591..1972593,1972600..1972605)) /locus_tag="Deba_1760" /note="CPxP motif; other site" /db_xref="CDD:48205" gene complement(1972686..1973873) /locus_tag="Deba_1761" /db_xref="GeneID:9494227" CDS complement(1972686..1973873) /locus_tag="Deba_1761" /note="InterPro IPR007272; KEGG: mgm:Mmc1_1601 protein of unknown function DUF395, YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: C0GRH3 Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807722.1" /db_xref="GI:302343193" /db_xref="GeneID:9494227" /translation="MSESVMVEKFKEGYAALFEKNWPLWVGGILLALLGTLCMVATRP WGVVGGLRVWADWLFYGVGLYDQAPRHALFLSDSAILTWGLLFGAFGSALLSRQFALR MAPGLELGKGVVGGVLMGVGSVMAGGCNVGGFYTALAAGSVSGFAMMIGLIVGAMIGL KYLLWEIEHITTKPPKQKQASSGQGGVDWDKVQPWLGGAFFLFLIGYAYCLSLRAYTD QAILMMLAMGIGLVIQRCRFCFVRAFRDPFMTGEAEATRAVALSVIISVIGFMLVKWY NSDLEMIYTYHHWIGGLVGGVIFGMGMLLSGGCGSGSLWRAGEGHVKLIIVVICFALS NSLFKQYVFTNEVAEAWGKGFLFLPNLVGGYFWAIIISAAVMLAWWAIMAWNEETDKL TLT" misc_feature complement(<1973049..>1973489) /locus_tag="Deba_1761" /note="putative inner membrane protein; Provisional; Region: PRK11099" /db_xref="CDD:182961" gene 1974094..1975497 /locus_tag="Deba_1762" /db_xref="GeneID:9494228" CDS 1974094..1975497 /locus_tag="Deba_1762" /note="InterProIPR019734:IPR000297:IPR011717:IPR001440:IPR 011990:IPR013026; KEGG: dal:Dalk_4303 hypothetical protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; Tetratricopeptide TPR_4; hypothetical protein; SPTR: B8FME5 hypothetical protein; PFAM: Tetratricopeptide repeat; PPIC-type PPIASE domain" /codon_start=1 /transl_table=11 /product="PpiC-type peptidyl-prolyl cis-trans isomerase" /protein_id="YP_003807723.1" /db_xref="GI:302343194" /db_xref="GeneID:9494228" /translation="MTKLLLRLACLIAALAAIAAAQPAHANDEEVDLGIITLKTRGEA ESVRGKLNSGANFEALAKQVSEGPAVSRGGRVGRQKVKGLRAEYRAALAGLAPMKPSK VVPIEDGYAVLMRFNQPRAEPTAPPPSLALEPKTYYQPSVAPARPVSPAEVEDAPVFM RGRRALMAALENLVVGDFESAEKNITEARGYNPHDEATMFMQSIVDGVNSGGLRKEAA VTFGDGFLAMLEGDVAQAEKLFGKAAADDPRLWQARLFEANMMAGQGRGDQARALLEA LVAQKPDVAEAHLSLAMMSMGEGKMGQGKQELERALKANPNMAQALYQMGQVAVYEGD AGRAEGYFKAAIAADPYYEEAYNDLGLIYAHLGRVADAEASFNKALEFNPTFFPAHIG LGNLYGRERQFNKAVDEFNKALTIDPTFAPAYYNAALAYVAMDMWADAIRYADKAASL GMDIPPDMAKDLNAHRR" misc_feature <1974172..>1974300 /locus_tag="Deba_1762" /note="peptidylprolyl isomerase; Provisional; Region: prsA; PRK00059" /db_xref="CDD:178832" misc_feature 1974598..>1975122 /locus_tag="Deba_1762" /note="Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilF; COG3063" /db_xref="CDD:32877" misc_feature 1974862..1975143 /locus_tag="Deba_1762" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1974865..1974867,1974901..1974903,1974913..1974915, 1974922..1974924,1974967..1974969,1975003..1975005, 1975015..1975017,1975024..1975026,1975069..1975071, 1975105..1975107,1975117..1975119,1975126..1975128) /locus_tag="Deba_1762" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(1974868..1974873,1974958..1974963,1974967..1974972, 1974979..1974984,1975060..1975065,1975072..1975077, 1975084..1975089) /locus_tag="Deba_1762" /note="binding surface" /db_xref="CDD:29151" misc_feature 1975051..1975350 /locus_tag="Deba_1762" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1975051..1975056,1975060..1975065,1975072..1975077, 1975162..1975167,1975171..1975176,1975183..1975188, 1975264..1975269,1975276..1975281,1975288..1975293) /locus_tag="Deba_1762" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1975069..1975071,1975105..1975107,1975117..1975119, 1975126..1975128,1975171..1975173,1975207..1975209, 1975219..1975221,1975228..1975230,1975273..1975275, 1975309..1975311,1975321..1975323,1975330..1975332) /locus_tag="Deba_1762" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature <1975270..>1975482 /locus_tag="Deba_1762" /note="mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); Region: 3a0801s09; TIGR00990" /db_xref="CDD:162147" gene complement(1975494..1976213) /locus_tag="Deba_1763" /db_xref="GeneID:9494229" CDS complement(1975494..1976213) /locus_tag="Deba_1763" /note="KEGG: dps:DP3078 hypothetical protein; SPTR: Q1NNL1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807724.1" /db_xref="GI:302343195" /db_xref="GeneID:9494229" /translation="MANVFLQAPPPDHLEDEALMIETAGEMPEVALAESLHHLGALPP DQLRALRAATARAYLKLIVRDLDYASVGQGLFRGLERALANLQRLTTFLASINEQLSP DDMHFLNSMLEDYLAREAAALAAGRPYASARPEVVEALARALGLERGRIVRALAAMAA LPAPDCRALAALARLERAGGARKRRHQGPEDLTIGVEDDQGQTLAQVVLTLIGPSGAE DPELRRRAEDVWRCLALPVVD" gene 1976379..1976798 /locus_tag="Deba_1764" /db_xref="GeneID:9494230" CDS 1976379..1976798 /locus_tag="Deba_1764" /note="KEGG: dol:Dole_2107 hypothetical protein; SPTR: A8ZTX8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807725.1" /db_xref="GI:302343196" /db_xref="GeneID:9494230" /translation="MGGNFSTNYRESNLISRLESSRQSAWSRQLSMLGDLGDDVARKL ALKLVHAGLIEVTNMRDLEEQLIVCVNDLLHAEDFEIQYAISPIRDLVDKPNRISLFV TAFIIEKLINHRAVVDVFGTDEEIYNVVNDEIMRMLK" gene 1976885..1977274 /locus_tag="Deba_1765" /db_xref="GeneID:9494231" CDS 1976885..1977274 /locus_tag="Deba_1765" /note="InterPro IPR003718; KEGG: cli:Clim_1429 OsmC family protein; PFAM: OsmC family protein; SPTR: B3ED64 OsmC family protein; PFAM: OsmC-like protein" /codon_start=1 /transl_table=11 /product="OsmC family protein" /protein_id="YP_003807726.1" /db_xref="GI:302343197" /db_xref="GeneID:9494231" /translation="MEIALTGGKKIEVRWDDFVVEADQSKAAGGEGDAPEPFMLFLAS LGACSGMYALSFCQARDIPTAGLKLRQKLVSDAEGKRLKQVRIEIVLPPEFPAKYEKA IVRVADQCAVKKAIQNPPLIETVAVRA" misc_feature 1976972..1977256 /locus_tag="Deba_1765" /note="OsmC-like protein; Region: OsmC; cl00767" /db_xref="CDD:193933" gene complement(1977271..1978236) /locus_tag="Deba_1766" /db_xref="GeneID:9494232" CDS complement(1977271..1978236) /locus_tag="Deba_1766" /note="COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB; InterPro IPR004485; KEGG: kpu:KP1_4465 hypothetical protein; PFAM: cobalamin biosynthesis protein CbiB; SPTR: C7C5E5 Cobalamin biosynthesis protein cobD; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD" /codon_start=1 /transl_table=11 /product="cobalamin biosynthesis protein CobD" /protein_id="YP_003807727.1" /db_xref="GI:302343198" /db_xref="GeneID:9494232" /translation="MIEPLLVLLACALDWAIGDPPRWPHFVRLVGFSIQRLERRLLPR AGRPAAALWAGAALTWCVVLGFGALSWLIMAGAAWLWPPLGWAVGLVLAFQCLAAGQL WREAGRVETPLARGDLALARQRLSMIVGRETRNLDAAGIRRAVIETVAENFNDGVAAP LLYLALGGPALAVAYKAVNTLDSMIGYKNEKYGYFGRFAARLDDVAGFAPARLSALVI VAAARLCGLEAAGAWRAARDCHADHASPNSGWPEAAAAGALDLRMGGPNVYGGRLVEK PWINPHGRDPLAADVAAARRLLATASLLGGLLAAGAAWLLPWGWF" misc_feature complement(1977382..1978236) /locus_tag="Deba_1766" /note="CobD/Cbib protein; Region: CobD_Cbib; cl00561" /db_xref="CDD:193870" gene 1978357..1978842 /locus_tag="Deba_1767" /db_xref="GeneID:9494233" CDS 1978357..1978842 /locus_tag="Deba_1767" /note="COGs: COG1267 phosphatidylglycerophosphatase A and related protein; InterPro IPR007686; KEGG: cpb:Cphamn1_1827 phosphatidylglycerophosphatase A; PFAM: phosphatidylglycerophosphatase A; SPTR: B3ELF7 phosphatidylglycerophosphatase A; PFAM: phosphatidylglycerophosphatase A" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase A" /protein_id="YP_003807728.1" /db_xref="GI:302343199" /db_xref="GeneID:9494233" /translation="MSAKTDTAIKLTASLGVGLLPGAPGTYGSLATLGLAAAWLALGG GAFVGLGYWLGVLGLSALAVAVSRAALARGVFGPSADPSAIVIDEAAGMLLALAWSDR LGWPLLMAFAAFRLFDIAKPWPVGWSQSLPGAWGVVVDDLLAGLYALAVTRLAVGWLG G" misc_feature <1978597..1978821 /locus_tag="Deba_1767" /note="Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism; Region: PgpA; cd06971" /db_xref="CDD:133477" misc_feature order(1978600..1978602,1978609..1978617,1978624..1978629, 1978633..1978638,1978645..1978647,1978675..1978683, 1978687..1978695,1978699..1978704,1978708..1978713, 1978819..1978821) /locus_tag="Deba_1767" /note="tetramer interfaces [polypeptide binding]; other site" /db_xref="CDD:133477" misc_feature order(1978609..1978611,1978618..1978623,1978765..1978767, 1978774..1978779) /locus_tag="Deba_1767" /note="binuclear metal-binding site [ion binding]; other site" /db_xref="CDD:133477" gene complement(1978845..1979927) /locus_tag="Deba_1768" /db_xref="GeneID:9494234" CDS complement(1978845..1979927) /locus_tag="Deba_1768" /note="COGs: COG2861 conserved hypothetical protein; InterPro IPR006837; KEGG: sfu:Sfum_3062 protein of unknown function DUF610, YibQ; PFAM: protein of unknown function DUF610 YibQ; SPTR: A0LMT4 Putative uncharacterized protein; PFAM: Divergent polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807729.1" /db_xref="GI:302343200" /db_xref="GeneID:9494234" /translation="MAPPPAPAKAVTQRAAPKASIAFEEAPRRQGGDRAAERLTDAML AGLARGGLDPARVGLSMAGEPWGQVAQMKVELAPGEDAGKIRSAVESALAGLSAPRRW RQRGRAWIMELSLAGRPSHRLIITAQAAPDGPAPPPDRREALAAIVIDDMGYLLGPAK ELLELDLDLTFSILPFSPHGRQVARMAKARGRQVLLHLPMEPKSFPRLSPGPGALLVE ADEQALARQTAADLDFLPEAVGVNNHMGSRFTEDATALRPVMTQIGRRGLFFVDSLTS PRSAAYDVAGQLGLRRARRDMFLDHEVDEQAIRRQIEGLIHLARGGHPVIAIGHPHQA TIKALRHYQERLRQEVRLRPVSELLD" misc_feature complement(1978851..1979489) /locus_tag="Deba_1768" /note="Divergent polysaccharide deacetylase; Region: Polysacc_deac_2; cl04721" /db_xref="CDD:194947" gene complement(1980126..1981469) /locus_tag="Deba_1769" /db_xref="GeneID:9494235" CDS complement(1980126..1981469) /locus_tag="Deba_1769" /note="COGs: COG0793 Periplasmic protease; InterPro IPR004447:IPR001478:IPR005151; KEGG: gme:Gmet_1853 peptidase S41A, C-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Q39UJ2 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)" /codon_start=1 /transl_table=11 /product="carboxyl-terminal protease" /protein_id="YP_003807730.1" /db_xref="GI:302343201" /db_xref="GeneID:9494235" /translation="MRRGQMRIPMILAAIVGLAMLLAPYLPTPQSNAASDDEYQQMRL LTEVLEEIKQKYVEEKTSKDLIQRAIKGMVDNLDPHSSYMSPEEFKDLQIETKGSFYG VGIEITSKDGVLTVVSPIEDTPAYKAGVKAGDRIIKIDGKLTKGMTTMDAVKSIRGAQ GSKVVLTVMRDDAPQLIDIAITRDLIPLHSVRYNLLEDGYGYIRISNFQETTTRDLIE ALQTLQSQKTPLRGLVLDLRNDPGGLLQEAVTAADQFLSGGVIVSTKGRNKNQDMVFN ATPTVTAGDYPIIVLINQGSASASEILAGALQDHKRAMVVGSPSFGKGSVQTIIPLGD NGALRLTTARYYTPNGRSIQAKGIEPDLVVPFDPPEEEAKDKPAAKDQSIREKDLTGA IAAEGDAAKADKKSDSKLYYAKDKLDKDNQLRRALDLLKAWQVFAPMSTKNTAAN" misc_feature complement(1980294..1981436) /locus_tag="Deba_1769" /note="Periplasmic protease [Cell envelope biogenesis, outer membrane]; Region: Prc; COG0793" /db_xref="CDD:31136" misc_feature complement(<1981212..1981358) /locus_tag="Deba_1769" /note="C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526" /db_xref="CDD:154960" misc_feature complement(1980918..1981172) /locus_tag="Deba_1769" /note="PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988" /db_xref="CDD:29045" misc_feature complement(order(1980999..1981004,1981011..1981016, 1981149..1981151,1981155..1981166)) /locus_tag="Deba_1769" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29045" misc_feature complement(1980375..>1980878) /locus_tag="Deba_1769" /note="C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560" /db_xref="CDD:143476" misc_feature complement(order(1980501..1980503,1980576..1980578)) /locus_tag="Deba_1769" /note="Catalytic dyad [active]" /db_xref="CDD:143476" gene complement(1981532..1982614) /locus_tag="Deba_1770" /db_xref="GeneID:9494236" CDS complement(1981532..1982614) /locus_tag="Deba_1770" /note="COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR011055:IPR016047; KEGG: aeh:Mlg_2569 peptidase M23B; PFAM: peptidase M23; SPTR: Q0A5H8 peptidase M23B; PFAM: peptidase family M23" /codon_start=1 /transl_table=11 /product="peptidase M23" /protein_id="YP_003807731.1" /db_xref="GI:302343202" /db_xref="GeneID:9494236" /translation="MKLLAAMLAALAVLAAGPPTARAADEIDARHELRLRLDDLLGQR QAMQEKASALASQLQEARRRQTEETALLVRLRQQRGEEAARLEAIKAQAAEMQTRLTQ ARRVYGRRLRALYLFGADASLHLLASSQSLAEALERSRAMTAVVEADRRRLDALAAQA AALARLEDQLRRQRDEHARTCLQLEQSLERLESHQSQASALMGRLSQEQGRLAEVIEA LREAESRLVRTFALDLRFDPDQAPEAVSQRRAAQPVEGVTHEAVGSRGVTFSARRGAQ VRAPWDGEVAYAAEISGWGKVVVLDHGQRVHTVLAYLETLSVEPGQRVAASQVVGAVG PGGRLYLEVRKNSKPVNSLEWLRLAP" misc_feature complement(1981562..1981828) /locus_tag="Deba_1770" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene complement(1982611..1983507) /locus_tag="Deba_1771" /db_xref="GeneID:9494237" CDS complement(1982611..1983507) /locus_tag="Deba_1771" /note="COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: afw:Anae109_0711 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: A7H878 Putative uncharacterized protein; PFAM: Predicted permease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807732.1" /db_xref="GI:302343203" /db_xref="GeneID:9494237" /translation="MKRPPRWDMAPSRALRQMAENPWLQGVAITSMTVALAIIGVYFT LVFNLHQAARQVFTGATLAVVLEDGASPERGARIAAQALDFTQVAEARFVSREEALER FSRQLGPKKDVLAGMDHNPLPNAVEVRLNPGRDPGDELIAALGALDGVREVLTARPWL QRLDTARRALTNLAAALGLLLFLAVTMLAGNTVRLAYHSRRAELEILDLIGSSPGYIR RPFVIEALLQALAASAAAYGLVAWLMVVLSAPATLPLGLDLSALFVLPPALPLVLAGV GAAAGLIGAWLGVGRALRVTRP" misc_feature complement(<1982836..1983468) /locus_tag="Deba_1771" /note="Cell division protein [Cell division and chromosome partitioning]; Region: FtsX; COG2177" /db_xref="CDD:32360" gene complement(1983504..1984169) /locus_tag="Deba_1772" /db_xref="GeneID:9494238" CDS complement(1983504..1984169) /locus_tag="Deba_1772" /note="COGs: COG2884 ATPase involved in cell division; InterPro IPR005286:IPR003593:IPR003439:IPR017871; KEGG: sth:STH139 cell-division ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q67T69 Cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE" /codon_start=1 /transl_table=11 /product="cell division ATP-binding protein FtsE" /protein_id="YP_003807733.1" /db_xref="GI:302343204" /db_xref="GeneID:9494238" /translation="MVRLERVGKLYHGAEKLVFDGLDLRLEPGSFVFLCGPSGAGKTT LINLIMGVELPTTGRVLVAGRDMGALRPRAMAKIRRQLGVVFQDFRLLGRRSVFENVA LALRVCGVGGADTQRMVEQALRWVDLTDKAMVRADTLSGGEQQRVAIARALARRPKLI LADEPTGNLDPQNTQRVLRLLQKAHAAGSTVLLATHDPTLPGRTPNASVAELRGGKLE MVR" misc_feature complement(1983522..1984169) /locus_tag="Deba_1772" /note="cell division ATP-binding protein FtsE; Region: FtsE; TIGR02673" /db_xref="CDD:131721" misc_feature complement(1983519..1984166) /locus_tag="Deba_1772" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature complement(1984041..1984064) /locus_tag="Deba_1772" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature complement(order(1983582..1983584,1983678..1983683, 1983909..1983911,1984038..1984046,1984050..1984055)) /locus_tag="Deba_1772" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature complement(1983909..1983920) /locus_tag="Deba_1772" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature complement(1983726..1983755) /locus_tag="Deba_1772" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature complement(1983678..1983695) /locus_tag="Deba_1772" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature complement(1983660..1983671) /locus_tag="Deba_1772" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature complement(1983576..1983596) /locus_tag="Deba_1772" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene complement(1984187..1985599) /locus_tag="Deba_1773" /db_xref="GeneID:9494239" CDS complement(1984187..1985599) /locus_tag="Deba_1773" /note="COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sat:SYN_01010 type I secretion outer membrane protein; PFAM: outer membrane efflux protein; SPTR: Q2LSG0 Type I secretion outer membrane protein; PFAM: Outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="outer membrane efflux protein" /protein_id="YP_003807734.1" /db_xref="GI:302343205" /db_xref="GeneID:9494239" /translation="MQRKAMWPMALKVIVAPLVALVLVAASCGASLAEEKATAAPSGP LTLNQAIDMALDYSPTLAQTREDLQKAHQTLWQAKTGYLPKLDTAYNWQRTQNPSVID TPLGSFVTSSENTYVWTTSLTQPLFTGFRITSGYKMADLGVDMARLDVELNILDLVVS VKQAYILYLTAQKNHEVAVQAVTQLQSHLQTARDFNEVGILPINDVLKVEVELSSAQQ EEVKTANYVALSLASLNTLLGLPVDGQLEVEDILPYKPLKLDYDDARNQARANRPELK SIKLGIEQANWNVTKAKSEYYPQVSVKGSYDMTSDEAGLGDSPYYDQSNWTVAAGASL NVFQWGATAAEVNKARADVRRAEMALKGLRDQVDLQVKEAYLYLKESEKNIQTSQVAV KQAEENYRITMERYREQLTTNTELLDAQTLLTKAQNNYFNSLGVFNTAKAQLLRAMGA GLDPEKLAKRAADKSASVTP" misc_feature complement(1984214..1985485) /locus_tag="Deba_1773" /note="Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538" /db_xref="CDD:31727" misc_feature complement(1984934..1985461) /locus_tag="Deba_1773" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(1984253..1984819) /locus_tag="Deba_1773" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(1985675..1986643) /locus_tag="Deba_1774" /db_xref="GeneID:9494240" CDS complement(1985675..1986643) /locus_tag="Deba_1774" /note="InterPro IPR001173; KEGG: mex:Mext_0845 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: A9W0Z4 glycosyl transferase family 2; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003807735.1" /db_xref="GI:302343206" /db_xref="GeneID:9494240" /translation="MDHQPPQIDLIIQPGPRLADDAAFSRACAALAASGDFGRVLVCR QPSGHAAPTLDFAPDFAAALAACRGEIVAVMAPDALPRPGLATGLIRRMAEPDAQAVL GPAARHDADEPWADLLDLANEFFDQGLAAGQTWPPLPACAAFRARWLRDAVGRPGPGP CQATDLFALACRVAAMGGGVVFEPQCQARATPPSGLAGALSLQARFGRGAALAVRALR ANGQVGWPWPRGWPWRVVLALAVIGLLVAFAPRFPADGALWAALGLLLFYPLERPFLK FVTENRPELLNRSLLFCLVRPFFWAWGMVRTGFESLLKINLAKRAG" misc_feature complement(1986191..>1986445) /locus_tag="Deba_1774" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" gene complement(1986693..1987076) /locus_tag="Deba_1775" /db_xref="GeneID:9494241" CDS complement(1986693..1987076) /locus_tag="Deba_1775" /note="InterPro IPR011990:IPR013026; KEGG: rca:Rcas_3987 hypothetical protein; SPTR: B6BDR6 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110kDa subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807736.1" /db_xref="GI:302343207" /db_xref="GeneID:9494241" /translation="MSDKSQPDDLASLFSGGQPQSEADRLISQAHLSHLEGDLDQAAR LFCQAIALGRDEPGLLLDLSKVLVAQKRHGEAVERLRQALAGSPDHLQARSIHLALSR AYEAMGQDQLARQHYRAFQDALTSL" misc_feature complement(1986711..1987001) /locus_tag="Deba_1775" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(1986756..1986761,1986768..1986773, 1986780..1986785,1986870..1986875,1986882..1986887, 1986891..1986896,1986981..1986986,1986993..1986998)) /locus_tag="Deba_1775" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(1986717..1986719,1986726..1986728, 1986738..1986740,1986774..1986776,1986828..1986830, 1986837..1986839,1986849..1986851,1986885..1986887, 1986930..1986932,1986939..1986941,1986951..1986953, 1986987..1986989)) /locus_tag="Deba_1775" /note="TPR motif; other site" /db_xref="CDD:29151" gene 1987194..1987922 /locus_tag="Deba_1776" /db_xref="GeneID:9494242" CDS 1987194..1987922 /locus_tag="Deba_1776" /note="COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: tro:trd_1606 dolichyl-phosphate mannose synthase related protein; PFAM: glycosyl transferase family 2; SPTR: B9L0B3 Dolichyl-phosphate mannose synthase related protein; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003807737.1" /db_xref="GI:302343208" /db_xref="GeneID:9494242" /translation="MLLSIVMPVYNEKPYLRRIVDRVQAIDLTGWERQLIIVDDGSDD GGEAIMDQLAGGHGLEGAGKPFERPVTLIRHRRNKGKGAALRSGLAAAVGDAVLIQDA DLEYDPADYPALLEPIAQGRAMVVYGSRFLHGRAGAPPHQWLANRLLSLCASALFGQR LSDMETCYKAFDRRALAGLELTANGFEVEPELTAKVLRRGLRIHETPISYQGRRARHG KKIRWTDAFKALAMLLRCRFNIKV" misc_feature 1987206..1987778 /locus_tag="Deba_1776" /note="DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; Region: DPM_DPG-synthase_like; cd04179" /db_xref="CDD:133022" misc_feature order(1987215..1987217,1987221..1987223,1987500..1987502) /locus_tag="Deba_1776" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133022" misc_feature order(1987311..1987313,1987497..1987502) /locus_tag="Deba_1776" /note="Putative Catalytic site [active]" /db_xref="CDD:133022" misc_feature 1987494..1987502 /locus_tag="Deba_1776" /note="DXD motif; other site" /db_xref="CDD:133022" gene 1987937..1988917 /locus_tag="Deba_1777" /db_xref="GeneID:9494243" CDS 1987937..1988917 /locus_tag="Deba_1777" /note="InterPro IPR005242; KEGG: gme:Gmet_1389 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Q39VV1 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807738.1" /db_xref="GI:302343209" /db_xref="GeneID:9494243" /translation="MWKNYLIGLVISVATLVIFFRQASPGQIWQAFGQVDLWLLGPVT MTYLASFVLRALRWRYLMRPVAEVGFGPLLSALMIGFLGNNILPAHLGELVRAVVLGR QAQVSASAVMATVVMERVWDGLTILLLLGVVLMFMDAPPWVRMGGWAGLAFFGGTMFF LQMFRWQRQRCMKLLGFCLRPLPARWSSGLLGMAQSFADGLAVARAADLAFIAGYSLV LWLTLSVCAWLLMIAFGFDLGLMSAIFLEVLVALALIIPAAPGFVGTFHMGAQVALVM FGVAAAEAGSYAMLLWLIHFVPTTIIGLYFLKKSGLGWAGLTGSSKNSVA" misc_feature 1987970..1988848 /locus_tag="Deba_1777" /note="Uncharacterised protein family (UPF0104); Region: UPF0104; cl04219" /db_xref="CDD:194802" gene 1989025..1989285 /locus_tag="Deba_1778" /db_xref="GeneID:9494244" CDS 1989025..1989285 /locus_tag="Deba_1778" /note="KEGG: mch:Mchl_4214 sulfoacetaldehyde acetyltransferase; SPTR: B7L185 Sulfoacetaldehyde acetyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807739.1" /db_xref="GI:302343210" /db_xref="GeneID:9494244" /translation="MEKCRLAAEFFQKLGEGSAEFITTMIEDEMNAELVEIFNKFGEK IDMGDMDPGRFQTSLLIIGYLLRAHEQTRLDLKSPSCSTALH" gene 1989307..1990008 /locus_tag="Deba_1779" /db_xref="GeneID:9494245" CDS 1989307..1990008 /locus_tag="Deba_1779" /note="COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: dol:Dole_1483 hypothetical protein; SPTR: A8ZZD4 Putative uncharacterized protein; PFAM: Putative lysophospholipase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807740.1" /db_xref="GI:302343211" /db_xref="GeneID:9494245" /translation="MSTNAFMFQGPGQGQLAGRLFLPQGPPRAKVVIAHGLQSSMASQ KLTNLALFLAERGMIAMQFDHSGCGESPGEMRLTTLSGRRDELVAAARALPEDDAPLV LVGSSMGGTAALLAAEALAPACLAVWSAPWDYLELMARLATQDPPPDLPLMPRDIMSL DLEAALARRAGVLFVHGQDDEVVPVAQARRGHDLARQPKDLLIIAGADHRLSRLADQK LAMARTLAWIERFIA" misc_feature 1989352..>1989528 /locus_tag="Deba_1779" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature 1989397..1989933 /locus_tag="Deba_1779" /note="Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695" /db_xref="CDD:193171" misc_feature <1989820..1989996 /locus_tag="Deba_1779" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 1990323..1991969 /locus_tag="Deba_1780" /db_xref="GeneID:9494246" CDS 1990323..1991969 /locus_tag="Deba_1780" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: ctt:CtCNB1_4404 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: D0IUZ3 Long-chain-fatty-acid--CoA ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003807741.1" /db_xref="GI:302343212" /db_xref="GeneID:9494246" /translation="MEKLWLKNWPADTPTEPRYDFGQTPVHEYLRQRAKQNPDKIAMV FYGREISYRELDQASDRFASHLHKNGVKKGDRVGIFMVNCPQYAIAHFGVQKLGAIVC PCSPLFKEMELEYEINDAGIEILVCLDILLPVVQKVMGGVKLRQVIVGNLNDYLPENP TIPLVDMMAYKKQAIPGVVDFMDVVNAEGDAPPRVDIDLDQDIALFQYTGGTTGMPKG CMLSHKAALFKTACVCLATGMDTQTVNLVNMPIFHIAGMVAGMNSTLFAGGTQVLMTM FDPKATMEAISRYKVNFWYSAVPMNVAVMKHPEVAAYDLGSLKLCLTSSFGIQLTEEI SAQWRAASKGGLLLEGAYGLSETHTADTFMPRQKVKYGTCGIPGPQQEFKIVDLTDPD KELPVGEQGEIVLRNPACFKGYWNRPEETAGTLRDGWVYTGDIGKFDDDGYLYLLGRK KEMIKVSGFSVFPEEVELLLNRYPGVAQTAVIGVPDDQKGEVVKAFVVMQPDKSATEQ EIIAWAKEKMSTYKVPKYVEFRASLPTLGTGKLLRRALKE" misc_feature 1990323..1991942 /locus_tag="Deba_1780" /note="acyl-CoA synthetase; Validated; Region: PRK06178" /db_xref="CDD:180444" misc_feature 1990473..>1991084 /locus_tag="Deba_1780" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature 1990902..1991960 /locus_tag="Deba_1780" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(1992053..1992661) /locus_tag="Deba_1781" /db_xref="GeneID:9494247" CDS complement(1992053..1992661) /locus_tag="Deba_1781" /note="KEGG: dvu:DVU0040 hypothetical protein; SPTR: Q72G21 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807742.1" /db_xref="GI:302343213" /db_xref="GeneID:9494247" /translation="MSVDQREILAQAAQRRQQALAIAAELGLLERWGRFGRPVIVGAV AHGLVCAPDIDMEIYCPKLNIAHGFEVLAQCAAGSRRVSAVYFENHLHDADKALYWQI KYRDDQDVEWKVDMWSAPDDYALPRGEHLIAPLAGVMTDELRAAILALKQELRASDAV SCLSIDLYRAVVDGGVRDMAQLRRWMDDNPIGQLSDWLPAAR" gene complement(1992794..1993429) /locus_tag="Deba_1782" /db_xref="GeneID:9494248" CDS complement(1992794..1993429) /locus_tag="Deba_1782" /note="InterPro IPR009057:IPR001647:IPR012287; KEGG: mpt:Mpe_A2962 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C5SCW5 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003807743.1" /db_xref="GI:302343214" /db_xref="GeneID:9494248" /translation="MSMTTSDGNVSRQTKAEARRRQVLDAASECFRMHGFHSASMAQI CKSAKMSAGHIYNFFTCKEEIIEAIVKEDLAETLKIINELHNSDEDFVDTMVSQLWRG VDRAMDLDNSALMLEVLAEAIRNPKVAQMVRQSDMVISGYVKALLRTSKKGVGQLEER DLNAITDLFSALFNGLMCCAVMNPDLDREAMTKLLRKVVGHILDPDESARP" misc_feature complement(1992860..1993396) /locus_tag="Deba_1782" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(1993223..1993363) /locus_tag="Deba_1782" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(1993508..1994965) /locus_tag="Deba_1783" /db_xref="GeneID:9494249" CDS complement(1993508..1994965) /locus_tag="Deba_1783" /note="COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: gur:Gura_3497 RND efflux system outer membrane lipoprotein; PFAM: outer membrane efflux protein; SPTR: A5G784 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" /codon_start=1 /transl_table=11 /product="RND efflux system, outer membrane lipoprotein, NodT family" /protein_id="YP_003807744.1" /db_xref="GI:302343215" /db_xref="GeneID:9494249" /translation="MTRKAFLPLLAALLLLPGCLSMAPDYKRPDAPTPAAWPSGPSYG PNQAAGQPVAEIGWRQFFVDPKLVKLIELSLAHNRDLRVAMLNIEKARAQYQIQRADL FPTVNATANGSIQRLPAELSSNGGDMIARQYTATIGFSSYELDLFGRVRSLNDQALEL YLATEQAARASQISLVAEVAGAYLTLAADQEQLRLAKHTLTSQRASYHLTKRSHEIGV ASALDLRQAQTSVDTARGDVAIYTTRAAQDINALNLLIGGQAPPELLPDGMPAAASAV KELPVGLPSQVLIQRPDILQAEHQLKADNANIGAARARFFPSISLTAGGGTASNQLDH LFRATTGYWSFVPTVNLPIFDTGRNLANLEATKVQREIAVAQYEKTIQTAFREVADAL AQRGTIDERLAAQQSLVEATSDAYRLSDARFRRGVDSYMSVLDSQRSSYGAQQGLINV RLSRLTNTVTLYKVLGGGWSEKTVKAAAPREDASR" misc_feature complement(1993553..1994914) /locus_tag="Deba_1783" /note="copper/silver efflux system outer membrane protein CusC; Provisional; Region: PRK09837" /db_xref="CDD:182103" misc_feature complement(1994195..1994767) /locus_tag="Deba_1783" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(1993568..1994119) /locus_tag="Deba_1783" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(1994969..1998136) /locus_tag="Deba_1784" /db_xref="GeneID:9494250" CDS complement(1994969..1998136) /locus_tag="Deba_1784" /note="COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR001036; KEGG: lhk:LHK_02130 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; SPTR: C1D9L2 Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family" /codon_start=1 /transl_table=11 /product="transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" /protein_id="YP_003807745.1" /db_xref="GI:302343216" /db_xref="GeneID:9494250" /translation="MARFFIDRPIFAWVIAIVIMLAGLLAIGTLPVAQYPAIAPTAVQ IDATYPGASAKTLEDTVTQVIEQKMKGIDHLSYISSTSDSAGSASIILTFDAGTDPDI AQVQVQNKLQLAMSLLPQDVQKQGVRVSKASASFLMVVGFYSEDGSMSPIDLSDYVAA HVQDVLSRVDGVGDVTLFGSQYAMRVWLDPNKLNNYKLMPSDIEAAIQAQNVQVSAGQ LGGAPAVEGQQLNATIAAQSRLQTPEQFGDILLRVNTDGSKVLLRDVARIELGSENYE TIPRFNGKPSAGLAIKLTTGANALDTSTAVRQELAEMSKLFPAGMKVVYPYDTTPFVR VSIEEVVKTLAEAIVLVFLVMFLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGYSINT LTMFAMVLAIGLLVDDAIVVVENVERVMRDEGLSPKEATRKSMDQITGALVGIAMVLS AVFVPMAFFGGSTGVIYRQFSITIVSAMVLSVVVALVLTPALCATMLKPLDGHDHQAK RGFFGWFNRSFQRGNQACQTVSGSIIRRWPRYMLLYVLLIGGMSLMFLRLPTSFLPDE DQGFIMTMVQLPPGATQERTLEVMKEVERHYLQDEKDTVKCIFTVVGFSFAGQGQNMG MAFIDFKDWSERNSPELRADAVAGRAMQAFSGIRDAMVFAFAPPAVTELGNAQGFDFQ LQDRAGLGHEALINARNQLLGMAAENPALMAVRPNGQDDTPEYQVLVDQAKAGALGLS MADVNDTLSSAWGGSYVNDFIDKGRVKKVFIQGDAPSRMLPADLEKWHVRNQLGEMVN FAAFSTARWNYGSPRLERYNGLPSVEILGQSAPGRSSGEAMRAMEELASKLPAGIGYQ WTGLSYQERLSGSQAPALYALSTLVVFLCLAALYESWSIPFAVLLAVPLGVIGALLAT SLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKDLHEKGMDLVKATIEALRLRLRPI IMTSMAFILGVLPLAITTGAGAGSQNAIGTGVMGGMISATVLGVILVPLFFVIVRRFF GDKKSPGDQSEGQQPAEPASPLEDR" misc_feature complement(1995017..1998136) /locus_tag="Deba_1784" /note="The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915" /db_xref="CDD:162104" misc_feature complement(1996715..>1997002) /locus_tag="Deba_1784" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" misc_feature complement(1995104..>1995511) /locus_tag="Deba_1784" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" gene complement(1998150..1999286) /locus_tag="Deba_1785" /db_xref="GeneID:9494251" CDS complement(1998150..1999286) /locus_tag="Deba_1785" /note="COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: gme:Gmet_0809 secretion protein HlyD; PFAM: secretion protein HlyD family protein; SPTR: Q39XH3 Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; manually curated; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_003807746.1" /db_xref="GI:302343217" /db_xref="GeneID:9494251" /translation="MLYLYTLFFLQGQPQAESAPPPAADPEVSVITLSHQQVALDSEL TGRTTPFLIAEVRPQVGGIINKRLFEEGSDVKAGQALYQIDPATYKATMDSARAALAK AEANLFAAQLKSQRYKDLVAIKAVSQQNYDDAYADLKQAEADVAACKAALETARINLE YTKVTSPISGRIGRSSVTAGALVTASQQASLATVQQLDPIYVDVTQSSSEMLRLKRQL ASGQLKRDEHNKAKVRLILEDGVTYPLEGELQFSDVTVDQTTGAVTLRAVFPNPEQEL LPGMYVRAILETGVNDRAILVPQRAVARNNKGEATVLVLDEQNRVQTRTLGLGRAVGA DWLVNSGLRAGERVIMEGSQKVAPGAIAKAVAFQPAASAADDKR" misc_feature complement(1998195..1999196) /locus_tag="Deba_1785" /note="multidrug efflux system transporter AcrA; Provisional; Region: PRK15030" /db_xref="CDD:184990" gene complement(1999321..1999944) /locus_tag="Deba_1786" /pseudo /db_xref="GeneID:9494252" gene complement(1999946..2000194) /locus_tag="Deba_1787" /pseudo /db_xref="GeneID:9494253" gene complement(2000191..2000499) /locus_tag="Deba_1788" /db_xref="GeneID:9494254" CDS complement(2000191..2000499) /locus_tag="Deba_1788" /note="KEGG: sfu:Sfum_3828 hypothetical protein; SPTR: A0LPZ5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807747.1" /db_xref="GI:302343218" /db_xref="GeneID:9494254" /translation="MNNLEQPQEPHYWDVFPKLIRVSRSPFVQRIPLSIRGLPEAPVF ESSNPDVASVDEDGNVECGFVPGAAMILVWDSAERLSLRHVQVEVYGGGVSAPVEVPS " gene complement(2000510..2000773) /locus_tag="Deba_1789" /db_xref="GeneID:9494255" CDS complement(2000510..2000773) /locus_tag="Deba_1789" /note="InterPro IPR008727; KEGG: sfu:Sfum_3827 PaaR repeat-containing protein; SPTR: Q310H1 Putative uncharacterized protein; PFAM: PAAR motif" /codon_start=1 /transl_table=11 /product="PaaR repeat-containing protein" /protein_id="YP_003807748.1" /db_xref="GI:302343219" /db_xref="GeneID:9494255" /translation="MSSQARLGDISSHGGVIITGASRTLDNGMPVARMGDLHVCPIPG HGVTPIVTGSFDTITEGLPNARIGDITACGAIIVTGSPNTIDN" misc_feature complement(2000522..2000758) /locus_tag="Deba_1789" /note="Uncharacterized conserved protein [Function unknown]; Region: COG4104" /db_xref="CDD:33861" gene complement(2000770..2001144) /locus_tag="Deba_1790" /db_xref="GeneID:9494256" CDS complement(2000770..2001144) /locus_tag="Deba_1790" /note="KEGG: sfu:Sfum_3826 hypothetical protein; SPTR: A0LPZ3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807749.1" /db_xref="GI:302343220" /db_xref="GeneID:9494256" /translation="MGERTTTPSGLSASEELLARTFDHWREEFRSILENHRREIQDRL EKIEREIEKKSDKENVEVLVRSIYSDLHRHAEEIDRLHARIGSKMGTETMWKIVGLVL TIGSTIGGLVGFLIHLLLKVNP" gene complement(2001157..2002206) /locus_tag="Deba_1791" /db_xref="GeneID:9494257" CDS complement(2001157..2002206) /locus_tag="Deba_1791" /note="KEGG: sfu:Sfum_3825 hypothetical protein; SPTR: A0LPZ2 Putative uncharacterized protein; PFAM: Phage-related baseplate assembly protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807750.1" /db_xref="GI:302343221" /db_xref="GeneID:9494257" /translation="MLETRDRHSEERYRNRWYGKYRAFVRDNNDPERLGRVRLEIPAV LGSGRENWSEWAAPCFPYGGNDDTGMFLVPEEGASVWAEFEGGVVQHPIWTGVWLAKS NPGEQPEESKRTCANAFCHDCEDKVEHQANRHDDLEHKKYHGHPPYYCPRLKVLLKTE TGHTILADDRDGDELLRIIDRAGQILTMEGKVKPEMQSGNALRRGTKDAEKGDQIDIA SQIVGSRARIQLTDLSRQQVILEAWQDKEKVHILSCDKGRSRWQKILIDTTKGREKVH IWGLNGTQEILVDSTAAAEQIRLTDKAGQVVRMNAAPGQESISATDKSGSLVFMDGVA GNIIIRSTNTVLINT" misc_feature complement(2001895..2002104) /locus_tag="Deba_1791" /note="Phage-related baseplate assembly protein; Region: Phage_base_V; cl11432" /db_xref="CDD:164221" gene complement(2002199..2002618) /locus_tag="Deba_1792" /db_xref="GeneID:9494258" CDS complement(2002199..2002618) /locus_tag="Deba_1792" /note="InterPro IPR010767; KEGG: dde:Dde_0940 hypothetical protein; PFAM: protein of unknown function DUF1353; SPTR: C6MK65 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1353)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807751.1" /db_xref="GI:302343222" /db_xref="GeneID:9494258" /translation="MSTETKTLFSGTALGLSGPLRVEILPNGMTARLTQPFRVRTGAG RIIEVPAGFETDFASVPRLFWRVVPPWGRYSPAAVVHDYLYHTGKVSRLAADRVFLEL MAALGVPLWKRQVMYWAVRLGGWLAWDASRKRETEHA" misc_feature complement(2002259..2002531) /locus_tag="Deba_1792" /note="Protein of unknown function (DUF1353); Region: DUF1353; pfam07087" /db_xref="CDD:148601" gene complement(2002615..2002989) /locus_tag="Deba_1793" /db_xref="GeneID:9494259" CDS complement(2002615..2002989) /locus_tag="Deba_1793" /note="InterPro IPR009045:IPR013230; KEGG: dde:Dde_1882 hypothetical protein; PFAM: peptidase M15A; SPTR: Q310G7 Putative uncharacterized protein; PFAM: peptidase M15" /codon_start=1 /transl_table=11 /product="peptidase M15A" /protein_id="YP_003807752.1" /db_xref="GI:302343223" /db_xref="GeneID:9494259" /translation="MGDLSKNFNRSEFACKGKNCCGHSAAVHPDLVDALQALRDRIGK PLSITSGFRCNRHNKAVGGAEQSFHTLGMAADVSCPAGVSPEQLAVIAEEIPLFREGG IGVYASWVHLDVRRSGKARWRS" misc_feature complement(2002651..2002974) /locus_tag="Deba_1793" /note="Peptidase M15; Region: Peptidase_M15_3; cl01194" /db_xref="CDD:120464" gene complement(2002982..2004265) /locus_tag="Deba_1794" /db_xref="GeneID:9494260" CDS complement(2002982..2004265) /locus_tag="Deba_1794" /note="COGs: COG3500 Phage protein D; KEGG: dde:Dde_0938 phage protein D-like; SPTR: Q314A7 Phage protein D-like; PFAM: Phage late control gene D protein (GPD)" /codon_start=1 /transl_table=11 /product="phage protein D" /protein_id="YP_003807753.1" /db_xref="GI:302343224" /db_xref="GeneID:9494260" /translation="MDLDTFKPTFLIQIEGQDLSKDITQEITSFVFTDNEEELDVLEL SVTDRNLQFVDDPLFQEGNEIVARFGYVGNLSPRKKAVIKDIDYDFPENGDPTIRIKA YDKGFKLAGKENQKVWQKPAPGILYSEIAEQVAAANSLTPVVTATKGTHLRVTQSNIS DAQFLKELAEKARDRDGDGVSGYVFYIQDDELHFHPRELDQTPLLTLEYFTDTKGLLR SFRPSTQSQGAKGAGVETKTVGVDPRKKDVVEHKANNATTPERTALGKQTYLVDGNTG EGSFKEQETGQIVPSFDRSEGFHEEPRQEPAQDSAEGKFREAELRQVEADAATIGIPQ LRAKKNVEIKGVGRKFSGIYYCHSVRHSISGAGYLCELKLKKNALGKGAGDKSAESQG KPNDKEAPPTPQNEPPAMVTIDADSGAVTQGGGNG" misc_feature complement(2003165..2004253) /locus_tag="Deba_1794" /note="Phage protein D [General function prediction only]; Region: COG3500; cl12180" /db_xref="CDD:175410" misc_feature complement(2003153..2004244) /locus_tag="Deba_1794" /note="Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954" /db_xref="CDD:147871" gene complement(2004332..2004622) /locus_tag="Deba_1795" /db_xref="GeneID:9494261" CDS complement(2004332..2004622) /locus_tag="Deba_1795" /note="KEGG: dde:Dde_0937 hypothetical protein; SPTR: C6MK62 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807754.1" /db_xref="GI:302343225" /db_xref="GeneID:9494261" /translation="MIGRDSRYARCVLYRDSDGTSLGMRQRIDTTPRHDDRLHTVVEG DRLDLLAHRYLGDARLWWIICDYNDLFFPLALDPGLALRIPSREHVQMRLLD" gene complement(2004619..2005089) /locus_tag="Deba_1796" /db_xref="GeneID:9494262" CDS complement(2004619..2005089) /locus_tag="Deba_1796" /note="KEGG: sfu:Sfum_3820 hypothetical protein; SPTR: Q310G5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807755.1" /db_xref="GI:302343226" /db_xref="GeneID:9494262" /translation="MAWDQQPIKGYLVDADTGERLEFQYNPNSISDEKSTDYATIKIP GMSHPRYQYVAGEPRRIAFKVELFKGPVKQKVDWLRSLQYPEHAGTMLKNAPHRVLLI FGDLYPGVTCIVRQVKARFFGLFDRDNLLPQRAEVDIVLEEYVDRSINWSEVRS" gene complement(2005093..2005404) /locus_tag="Deba_1797" /db_xref="GeneID:9494263" CDS complement(2005093..2005404) /locus_tag="Deba_1797" /note="KEGG: sfu:Sfum_3819 hypothetical protein; SPTR: A0LPY6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807756.1" /db_xref="GI:302343227" /db_xref="GeneID:9494263" /translation="MKRIFVCSPFAGDIARNVKVAEALCRRVMRNGHAPFAPHLLYPT FTDDSVPEQRETGIACGLAYMECCDEVWAFTGNGISSGMRLELDRAGQLGKPIIEIAE V" gene complement(2005413..2009048) /locus_tag="Deba_1798" /db_xref="GeneID:9494264" CDS complement(2005413..2009048) /locus_tag="Deba_1798" /note="InterPro IPR010090; KEGG: sfu:Sfum_3818 TP901 family phage tail tape measure protein; PFAM: tail tape measure protein TP901 core region; SPTR: A0LPY5 Phage tail tape measure protein, TP901 family; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region" /codon_start=1 /transl_table=11 /product="phage tail tape measure protein, TP901 family" /protein_id="YP_003807757.1" /db_xref="GI:302343228" /db_xref="GeneID:9494264" /translation="MNGDLGLGIVVSMKDAFSQNAQRIRGSMMDLDSTVADASERMTR NLDRIQQGTMMLGAGLALMAVPAALVASTAATQKALGELASLGVQDLRAIEDAAESFT NQWSGADKAAFITATYDVKSALSNLSDEAVGVFTSMAAMTAKATKATTQEMVGTFTTA YGIFKPIMADMNDMEWATAFSGAMAQTVASFKTNGTQMADAIKNIGAVAAASNIPLNE QLAVLGQLQTTMPGSEAGTLYKAFIMKAAEAGDELGLSFTDTSGRLKGVVPILQEIKR QFPDLSNAAAQVKLKKAFGSDEAVKFLLQMSAGMESLEGNIQSVGRAMKTGTAVTEQM ADAMNQDIGARFLLLRQQVANLSEILGRTLLPVVTPMINGVSRFILFLQRMAKSMPGV TRVVLGLSMALGTILVVAGAVTAAVGMVGLMLPAIKAGFVAISAALAGVGSAVATYFL PVTAIIAGVILSVYLLKRAWETNFGGIQEIITGAWNKVSLVFQGIRELVGSLSGGVGQ MSAELAQKLESAGLLGFVVTVFKAYYRVRQAMAGLWGAFSHAFGRIRAILEPTVRTLM SAYAALASAVFSVVEIFGVAASATDGSSWRTFGTVIGTVAGVLLQGLAFALKIVAWNL SLIVRALAVVVRSVVWVGKIIVGSLVGAAKFIYKFLLPVRMIGEAFVAAGKIVYAVWQ VLTGDISLLAGLKAIGGAVYDFLATPFRWARDVVVGVWNFISGIFTSIGRLVADAAGQ IGQAILNLPIISTLRDLFATVRSFFAGDTTFFEAGKKLLITLGEGIWSAVTYPFTMLK NALGKLRNLLPFSDAREGPLASLTTSGSALLKTLADGMSLTQTLPAKVFGFAARGILS AAAGAWQQIKTAGGNLMDAASAPFRMAEKLWDGLTSGAQTVAAKAGTIFGGLKQSLFG DTPELAIKPPQANTWDALATGAVNVRDRIVATLSAVPGAVGRIFASAGTEGQSIWQRL SSGASAGIQAIKDRSAGIANGLLSSARAMLGVQTPVPQVAEQKQPLKTAQPAESIGQR IIESVLSLVPRLDERLVPKALSAMLMLQPVMATAAPPPQPMNGTVQTVAAAVEPVSKS YIQPFAVEPAPEIGSASLAPAGIERSKTAAPTPIAKPLQSGLAETVPSERLIASARTA PATPLRGEDAGQGLRELLESLLSRLDGLADRPVELSVTTNIDGRKVAEAVYKDLRERK IRNYETL" misc_feature complement(2008164..>2008598) /locus_tag="Deba_1798" /note="Phage-related minor tail protein; Region: PhageMin_Tail; pfam10145" /db_xref="CDD:192463" misc_feature complement(<2006598..>2007638) /locus_tag="Deba_1798" /note="Phage-related protein [Function unknown]; Region: COG5412" /db_xref="CDD:34971" misc_feature complement(<2005599..>2005907) /locus_tag="Deba_1798" /note="DNA polymerase III subunits gamma and tau; Validated; Region: PRK07994" /db_xref="CDD:181191" gene complement(2009192..2009869) /locus_tag="Deba_1799" /db_xref="GeneID:9494265" CDS complement(2009192..2009869) /locus_tag="Deba_1799" /note="KEGG: sfu:Sfum_3817 hypothetical protein; SPTR: A0LPY4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807758.1" /db_xref="GI:302343229" /db_xref="GeneID:9494265" /translation="MYSFELPSGTELELREMTGAEEELLTNQRLIRSGEAINQVLRNC FVRLGEKTDPDLSEVMNLLSGDRLFALVRLRQISLGDEVELELSCPNSACRMTNFVTV NLEDLKVTPYGEEREFAFMLPGSKKTVRFGYLDGHKEKRLASLREPNISSAMLIRILD IDGKAPSKKSLAEMSMRDRNALRQEMSRVDAGIDTSVETECDGCGTKIRTRLEAEPAF LFPGVRL" gene complement(2009885..2010346) /locus_tag="Deba_1800" /db_xref="GeneID:9494266" CDS complement(2009885..2010346) /locus_tag="Deba_1800" /note="InterPro IPR011747; KEGG: sfu:Sfum_3816 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C6MK57 Putative uncharacterized protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807759.1" /db_xref="GI:302343230" /db_xref="GeneID:9494266" /translation="MRSGNMPKSLYQNWQFAIEVNGFDVALFHKGQEPKTEFEEVAFA PAGSMFDQKVAGRVKFEDITLEKGALQDGSDEAAREWIKKQVDVNAVTGGLPADYMRD IDVVRYDRTGNETRRWTLHGAWVKALEYDELEGGNTENTIEKLTICFQYWT" misc_feature complement(2009888..2010310) /locus_tag="Deba_1800" /note="T4-like virus tail tube protein gp19; Region: Phage_T4_gp19; cl12125" /db_xref="CDD:164331" gene complement(2010362..2011891) /locus_tag="Deba_1801" /db_xref="GeneID:9494267" CDS complement(2010362..2011891) /locus_tag="Deba_1801" /note="COGs: COG3497 Phage tail sheath protein FI; InterPro IPR007067; KEGG: sfu:Sfum_3815 phage tail sheath protein; PFAM: tail sheath protein; SPTR: C6MK56 Tail sheath protein; PFAM: Phage tail sheath protein" /codon_start=1 /transl_table=11 /product="tail sheath protein" /protein_id="YP_003807760.1" /db_xref="GI:302343231" /db_xref="GeneID:9494267" /translation="MPTYLSPGIYTRETDFSFYVKQISTSSAAMVGVAEKGPINKPVL VTSWEQFINRFGSYINESYLAYAARAFFDNGGSVLYVTRIAHLTDPTDRDTLTALKAS VVLQNREATPADALRIEAVNEGVWGDRLSVSIEDGSLDPANHFNLVVRHKGDVVEVFK DLSMDETLPNHVELAINDRSDFILVQDLAAAMGTPGDRPALGVFTLSGGDNGLTDLAD ADFIGDPSQHTGLYGFDEIDALNLLMVPGVTTVPVINAGIAYAEGRKDLLFIADTPMH LEPLEAVDFRKGQGMYSHAAFNSSYAALYYPWLEISDPVNSRKKLVPPCGAVAGCIAR SDQKTNVWNAPAGIDRGRIFNTLSLDYKTSRGERDVLYPEGVNVIAVFPDTGINIWGQ KTLQSQPSAVDRINVRRLMMYMEEAISESSRFVVFEPNHPQTWRALGRLINPFLQDIK DKGGLYDFAFQCDEETNTPAVIDRNEMVARVFVKPTKTAEFIELNFILTSTGADFKEI I" misc_feature complement(2010395..2011885) /locus_tag="Deba_1801" /note="Phage tail sheath protein; Region: Phage_sheath_1; cl01389" /db_xref="CDD:194121" gene complement(2011894..2012151) /locus_tag="Deba_1802" /db_xref="GeneID:9494268" CDS complement(2011894..2012151) /locus_tag="Deba_1802" /note="KEGG: sfu:Sfum_3814 hypothetical protein; SPTR: C6MK55 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807761.1" /db_xref="GI:302343232" /db_xref="GeneID:9494268" /translation="MIEIRNLQFQPLTFNLSGQGTLHLGPRERKSIARKELSAEIKTA GKRGLVRITDLTGGAEPEPGKPTATEDAGTDEAKTTSKRRK" gene complement(2012164..2012712) /locus_tag="Deba_1803" /db_xref="GeneID:9494269" CDS complement(2012164..2012712) /locus_tag="Deba_1803" /note="KEGG: sfu:Sfum_3813 hypothetical protein; SPTR: C6MK54 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807762.1" /db_xref="GI:302343233" /db_xref="GeneID:9494269" /translation="MSTIQTVTETLIRLAKQAIHPDTVLVFPDDLFEVQRTPSVILQG PKLTEDRFRRSQSRLFEKNVAELSFEECRFPRLYHLDFDLVVTVDREAELLGFHESVS RFLQLHPEIAITDQGSLNLTELVPLGGLARVNLSNLRQSSGRIRIESCPVYDGDLRDG RLIRDRTFQFHGDVTEQRTIQP" gene 2012898..2013506 /locus_tag="Deba_1804" /db_xref="GeneID:9494270" CDS 2012898..2013506 /locus_tag="Deba_1804" /note="InterPro IPR011075:IPR009057:IPR001647:IPR015893; KEGG: dat:HRM2_00670 HTH-type transcriptional regulator (TetR-family protein); PFAM: regulatory protein TetR; SPTR: Q2N4Y3 Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family; YsiA-like protein, C-terminal region" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003807763.1" /db_xref="GI:302343234" /db_xref="GeneID:9494270" /translation="MNSSNKHLPAEERRAVTVEAVVELAGEQNPSEITTAAIAKRMGL TQGALFRHFPNKDAILQAVMEWVAERLMSRIEKAVHAEPSPLAALESMFMAHVDFITE HPGIPRMLFGELQRSEETAPKRMAQTLIRRYGERLNRLFEQGKTCGELDGKLDNEAAA TLFIGTIQGLVMQSLIAGDVSHMRRNAPKVFAIYQRGIRSAS" misc_feature 2012973..2013086 /locus_tag="Deba_1804" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" misc_feature <2013168..>2013362 /locus_tag="Deba_1804" /note="C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some...; Region: Peptidase_C1; cl00298" /db_xref="CDD:193755" gene 2013503..2014654 /locus_tag="Deba_1805" /db_xref="GeneID:9494271" CDS 2013503..2014654 /locus_tag="Deba_1805" /note="COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dat:HRM2_00680 HlyD; PFAM: secretion protein HlyD family protein; SPTR: Q1JW26 Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_003807764.1" /db_xref="GI:302343235" /db_xref="GeneID:9494271" /translation="MKKLPFQKRTLALIAVLFPLLALFVYVALRSGPLAPVSVVLATV ENKSISPKLFGIGTIEARYTYKIGPTFAGRVKRLDVHVGERVKAGQVLGEMDPVDLDE RIRAQDATLKRANAQLNEAQARKDYAQTQALRYEQLLKARSTSEEVVATKQQDLLVAK AGLTAAREELSRVRAEREALEAQRSNLSLVAPVDGLVVSRDADPGTTVVAGQAVVELI DPSTLWVNVRFDQIRARGLAAGLSAQITLRSQAGELQAGRVLRVEPLADAVTEETLAK VVFDQIPDPLPPIGELAEITITLPTLAATPVVPNAAIHHKDSRLGVWQVTNGDLRFTA VSLGIADLEGRVQIREGLKVGDQVVAYSENALNERSRIHVVDHIPGVTQ" misc_feature 2013617..2014627 /locus_tag="Deba_1805" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 2014651..2015856 /locus_tag="Deba_1806" /db_xref="GeneID:9494272" CDS 2014651..2015856 /locus_tag="Deba_1806" /note="COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dat:HRM2_00690 ABC-type transporter, predicted premease protein; PFAM: protein of unknown function DUF214; SPTR: Q1JW27 Putative uncharacterized protein; manually curated; PFAM: Predicted permease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807765.1" /db_xref="GI:302343236" /db_xref="GeneID:9494272" /translation="MISLAGRDIMHSWGKFVFTGMGLGLLIGITLSMAGIYRGMVDDA KVLLDNSGADLWVVQKDTLGPYAESSSLYDDIWRGIRGMPGVERAANITYLTMQVGKQ DGDVRAMVTGVTPGEPGTPGWPPYLVAGRQITRSHYEAVADIASGFKLGDRIQIRRNH YTIVGLTRRMVSSNGDPMVFIPLKDAQEAQFLKDNDAIREQRRRTAENPAFNRPGVPG LLDAVIASQSTNPYVNAVLVRVEPGHAPEEVAESIRRWKRLTVYTRSQMEEILVGKLI ATSARQIFMFLVILSIVSSAIVAFIIYTLTLGKIREIAVLKLIGTKNRTIVGLIMQQS IALGLIGFVVGKISATLLMAPIFPKYVLLQPLDSVMGFIAVVMICVLSSIIAIRAALR VDPAEAIGG" misc_feature <2014864..2015847 /locus_tag="Deba_1806" /note="Acidobacterial duplicated orphan permease; Region: ADOP; TIGR03434" /db_xref="CDD:163262" misc_feature <2015575..2015835 /locus_tag="Deba_1806" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 2015858..2016568 /locus_tag="Deba_1807" /db_xref="GeneID:9494273" CDS 2015858..2016568 /locus_tag="Deba_1807" /note="COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: dat:HRM2_00700 ABC-type transporter, predicted ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q1K3J3 ABC transporter related; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807766.1" /db_xref="GI:302343237" /db_xref="GeneID:9494273" /translation="MTAKGIRIQGLKKRYGSGDTAVDALKTVDMHVAPGEVVGLIGPS GSGKTTLLKCLGAVIEPTAGKMILGDDVIYDDGWKVKDLRALRRDRIGFVFQAPYLIP FLDVTDNVALLPMLAGMPNAEARKRAIGLFKALDVEHRAKAMPSQLSGGEQQRVAIAR GLVNRPPVILADEPTAPLDSERALAVIRILNDMAKKFETAIIVVTHDEKIIPTFKRIY HIRDGVTYEEEGEGRGFE" misc_feature 2015873..2016544 /locus_tag="Deba_1807" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature 2015873..2016526 /locus_tag="Deba_1807" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature 2015981..2016004 /locus_tag="Deba_1807" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature order(2015990..2015995,2015999..2016007,2016143..2016145, 2016371..2016376,2016473..2016475) /locus_tag="Deba_1807" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature 2016134..2016145 /locus_tag="Deba_1807" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature 2016299..2016328 /locus_tag="Deba_1807" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature 2016359..2016376 /locus_tag="Deba_1807" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature 2016383..2016394 /locus_tag="Deba_1807" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature 2016461..2016481 /locus_tag="Deba_1807" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene 2016593..2017054 /locus_tag="Deba_1808" /db_xref="GeneID:9494274" CDS 2016593..2017054 /locus_tag="Deba_1808" /note="InterPro IPR010980:IPR002321; KEGG: tbd:Tbd_1357 hypothetical protein; SPTR: Q1K3J4 Putative uncharacterized protein; manually curated; PFAM: cytochrome C'" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807767.1" /db_xref="GI:302343238" /db_xref="GeneID:9494274" /translation="MTKDVWLKRVALVVLMTILTAISSATWAEENDSAVKALSLRIIM QELSNNMQIVTDAISREDWEQVAGTAPQIANHPQPPIAEKMRILGFAGSNVSNFKSFD KQTHQAAKELEKIAMRKDGKGVIAQFATLQKSCLACHQSFRKTFKEHFYGK" misc_feature <2016878..2017021 /locus_tag="Deba_1808" /note="Cytochrome C'; Region: Cytochrom_C_2; cl01610" /db_xref="CDD:194176" gene 2017044..2018561 /locus_tag="Deba_1809" /db_xref="GeneID:9494275" CDS 2017044..2018561 /locus_tag="Deba_1809" /note="COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: dat:HRM2_00710 proton-shuffling outer membrane efflux protein (OprM-like); PFAM: outer membrane efflux protein; SPTR: Q1JW30 RND efflux system, outer membrane lipoprotein, NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" /codon_start=1 /transl_table=11 /product="RND efflux system, outer membrane lipoprotein, NodT family" /protein_id="YP_003807768.1" /db_xref="GI:302343239" /db_xref="GeneID:9494275" /translation="MGNNNMVVHYALIGMCLLTLTGCAVGPDFQRPAPPDVIGYTPTP LATSLNSSPTTLGDPQNIIKAERLTKHWWRAMGADKLDMLISEALERNPTLMAAEATL RQAQELYAARAGSTLYPQLEGNLGGQRQRFNPGTLGQTGEAREFSLYNAGVGVRYTFD LAGGNRRALEALAARSDYQQFQLEGARLTLVANIVTTAITQASLKRQTEIIENILKSQ ENQLELTRERIRLGHGEPDDALALQTQLEQTRAKLPPLRYQLQQNEHFLAVLVGKAPG ESLLPSFTLEDFTLPPELPLLIPSELVRARPDILGAEALLHASNAEYGVAISKLYPQL NLSADLGSQALTTGALFGGGSAVWSLVGQLTQPLFNPGLPAEKRAALAAFDAAAANYQ SVVLEALRNVADVLRALENDSKRLEALSAADSASGKSLESTQRRYKLGTVSYYDLLIA QQQRLQTELDLTEGQAKRLVNTAAFYQAMGGGLNGITGSAGDVPEAQSAERIASR" misc_feature 2017101..2018489 /locus_tag="Deba_1809" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature 2017284..2017859 /locus_tag="Deba_1809" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature 2017959..2018483 /locus_tag="Deba_1809" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(2018531..2019016) /locus_tag="Deba_1810" /db_xref="GeneID:9494276" CDS complement(2018531..2019016) /locus_tag="Deba_1810" /note="KEGG: sfu:Sfum_3812 hypothetical protein; SPTR: A0LPX9 Putative uncharacterized protein; PFAM: Bacteriophage protein of unknown function (DUF646)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807769.1" /db_xref="GI:302343240" /db_xref="GeneID:9494276" /translation="MGVRRTGDWDKARAKLTTGMGPRLATALRQATIRNALFLVREIQ RGIRSQAPGGQAFVKLAESTIERKGSSKALIDTGFLVNAITQKIMADKAFVGLLRGTV NKDGEDMVNIGAVMEYGATIKHPNGATIVIPARPFLHPVMEKYREQILQNYREAIRSA L" gene complement(2019006..2019365) /locus_tag="Deba_1811" /db_xref="GeneID:9494277" CDS complement(2019006..2019365) /locus_tag="Deba_1811" /note="KEGG: sfu:Sfum_3811 hypothetical protein; SPTR: A0LPX8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807770.1" /db_xref="GI:302343241" /db_xref="GeneID:9494277" /translation="MLLNDRERAEAVADVARLILSSGQTARILRVVPGERLYGTDDAE YVEVAVIPLELNETPPEELSGKIDALACVLPNADVKGEDRLAADRETYRIQSVEEEHF FGTVTHKNLQLVKLNGR" gene complement(2019352..2019816) /locus_tag="Deba_1812" /db_xref="GeneID:9494278" CDS complement(2019352..2019816) /locus_tag="Deba_1812" /note="KEGG: sfu:Sfum_3810 hypothetical protein; SPTR: C6MK51 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807771.1" /db_xref="GI:302343242" /db_xref="GeneID:9494278" /translation="MLLSNLIADLRLDLSDPGASLFEDQTLERCVRKAVFRVGRDLDQ SLTVIAGEITPDPTGEVRELLVIMAQIHACQVMRSATANAFSFSSGDKRVDKTGQPGH WAKLEADLLADYRQRLTELRPATQLDQEAYILTPSGLTPVIYEQGIDLDVVE" gene complement(2019803..2020162) /locus_tag="Deba_1813" /db_xref="GeneID:9494279" CDS complement(2019803..2020162) /locus_tag="Deba_1813" /note="KEGG: dde:Dde_0925 hypothetical protein; SPTR: Q314C0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807772.1" /db_xref="GI:302343243" /db_xref="GeneID:9494279" /translation="MNRIKNIRPGVLVIPDAGLKLKPGQVVEVERLTKQIQAALKNGR LAMADKPKQEPLAPPEPDQDAEPVDLSKLSATDAISRVNEEANPETLKGYMDTEKRRT VIDALKSRLEGLQGAAE" gene complement(2020182..2021045) /locus_tag="Deba_1814" /db_xref="GeneID:9494280" CDS complement(2020182..2021045) /locus_tag="Deba_1814" /note="KEGG: dde:Dde_0924 hypothetical protein; SPTR: Q314C1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807773.1" /db_xref="GI:302343244" /db_xref="GeneID:9494280" /translation="MKTNQLKIHSQEYMETMARLMSEALESPEGMRALAAAIAAPIEQ EIKRKEISSLLLTKHTLPKGERPVYQKKPTVKAHWISKDGDAQEQEVGKDEVEFPTNR IHSNPMVDVSVLKNGNIGTLMDIQTSAADAIRKEMDRRTISVLSSAIPATNTIEVTGD LLTEEALNEAISIIEDLELSVKYIVMRGRRFNDMRGWNLDPQTKLELRQKGVIKNYGT GGILLTASMPLDEIIIVPDEEVGKMPVRENLKTESIDQKTRFKTGWLVWSEIGQGITR PDIMAKVKLVP" gene complement(2021064..2021426) /locus_tag="Deba_1815" /db_xref="GeneID:9494281" CDS complement(2021064..2021426) /locus_tag="Deba_1815" /note="KEGG: dde:Dde_0923 hypothetical protein; SPTR: C6MK48 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807774.1" /db_xref="GI:302343245" /db_xref="GeneID:9494281" /translation="MSFINPCHRSLAYGDGHIQGDGQLGQVVRVVGDDLFAVNTDPTK RSFGILIKDYARGEMPGIYCDGGVYETDAFEGTVVAGDDLKVSAGGRLTNGVAAGEHV VAHAISVQSGVLKFRLLV" gene complement(2021439..2023841) /locus_tag="Deba_1816" /db_xref="GeneID:9494282" CDS complement(2021439..2023841) /locus_tag="Deba_1816" /EC_number="2.1.1.72" /note="COGs: COG3392 Adenine-specific DNA methylase; InterPro IPR002052:IPR002294:IPR012327; KEGG: dde:Dde_0922 adenine-specific DNA methylase-like protein; PFAM: D12 class N6 adenine-specific DNA methyltransferase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q314C3 Adenine-specific DNA methylase-like; PFAM: D12 class N6 adenine-specific DNA methyltransferase" /codon_start=1 /transl_table=11 /product="Site-specific DNA-methyltransferase (adenine-specific)" /protein_id="YP_003807775.1" /db_xref="GI:302343246" /db_xref="GeneID:9494282" /translation="MELFATDLERLAFLLEADAALTLDPDALGTEAAEQSAPEELPPE KRPKYITNYIGSKQKLVDWIWKHTPEGVGTVLDAFSGSAVVAYMYKTKGLQVIANDRL RYCHHAAKAIIENNSVRLSEDEIEALLADNAKAGSFVQDNFKGIFFAKGVHALIDTIR ANCDKLSGFKKDIALFSLGKTCMSGKGGFGHFSSSTDYGRRQDTPDEFKDRLRKNLQR INALVFDNDKENKAHRQDINDLLPKAKADLAYFDPPYATEFSTTNYERAYHFVEGLMT YWEGLEIKADTKVKYYETDHKTVTKANASEFFQTFLGNAKHIPHWLISYRDHAYPNEQ EMKRIIGSFGKQSRMKSKDHHYAITSKHGEASNAKERLFVCAPGAKASAEREEKPVPM AAAANFHTSIPVDIRLGDGERLATEAMDVGSAGDPQFSFVLCRTGTNKNGDHFTAEEL SGRHMTAVNKKVDLQHSQEFNDIVGGIVAADYLEDDNGGRVECVGELYVHDTPAARLA YKLMKRGIISQVSMECDYQEGECSVCHKRFQNKADYCTHLRKFKGRDFNGQPVFEILQ GVTFTGLGLLDRKGADENARILQVASLQSQPDQSQPEGDSTMEDKTKPTDDPAAKTES EAAKKKPAQQEGDPARVTDLEKENRQLKAQVAELQKRVQELEAEQKATACRSRAKKLL TRLEKQGLSFASEEDREAELKRLAKLSDEAFAATEAAYERLPKSAKADKEEKPADSDQ GGKPAAKASTETPLRSDAGVRPHDVDDRKVSLEDRLRDGFMAAYRNRVGEDSPEHSEI NA" misc_feature complement(2022717..2023688) /locus_tag="Deba_1816" /note="Adenine-specific DNA methylase [DNA replication, recombination, and repair]; Region: COG3392" /db_xref="CDD:33199" misc_feature complement(2022948..2023685) /locus_tag="Deba_1816" /note="D12 class N6 adenine-specific DNA methyltransferase; Region: MethyltransfD12; cl00408" /db_xref="CDD:193804" misc_feature complement(<2022279..>2022467) /locus_tag="Deba_1816" /note="Caudovirus prohead protease; Region: Peptidase_U35; cl01521" /db_xref="CDD:163987" misc_feature complement(<2021619..>2021939) /locus_tag="Deba_1816" /note="chromosome segregation protein; Provisional; Region: PRK02224" /db_xref="CDD:179385" gene complement(2023945..2024298) /locus_tag="Deba_1817" /db_xref="GeneID:9494283" CDS complement(2023945..2024298) /locus_tag="Deba_1817" /note="KEGG: dde:Dde_1905 hypothetical protein; SPTR: C6MK46 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807776.1" /db_xref="GI:302343247" /db_xref="GeneID:9494283" /translation="MKLRYMIDSIVADREATVPEYVPVGVWVQGLGPGLDVEMYYLDR GPSGLADRKDEAAWVVNRLVEAGATSLPADFLEYHRLSRSPYDGVFSEITESDEYPSL DACGKAVLARLNPVR" gene complement(2024295..2024807) /locus_tag="Deba_1818" /db_xref="GeneID:9494284" CDS complement(2024295..2024807) /locus_tag="Deba_1818" /note="KEGG: dde:Dde_0920 hypothetical protein; SPTR: Q314C5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807777.1" /db_xref="GI:302343248" /db_xref="GeneID:9494284" /translation="MTMKDFIEQEKRRLQEALHWFNNRGSRMTVRESGALFLDTLVDS FTVTRIAPHFDTAGNHLRTDFWLLWKALGYDEGFQHAHTVKVVDVRVEDTLTAEHDGK EAEGWLIVDLTDDLGRIHHVEMMEPVSEPELAADWQRWTAYRQKNAERFHRIDAQLLA EHLRIAEDWS" gene complement(2024804..2029393) /locus_tag="Deba_1819" /db_xref="GeneID:9494285" CDS complement(2024804..2029393) /locus_tag="Deba_1819" /note="InterPro IPR006528; KEGG: dde:Dde_0919 phage head morphogenesis protein, SPP1 gp7; PFAM: head morphogenesis protein SPP1 gp7; SPTR: Q314C6 Phage head morphogenesis protein, SPP1 gp7; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: Phage Mu protein F like protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family" /codon_start=1 /transl_table=11 /product="phage head morphogenesis protein, SPP1 gp7 family" /protein_id="YP_003807778.1" /db_xref="GI:302343249" /db_xref="GeneID:9494285" /translation="MPSDLKQRIQAATLKSLTARNRYNDQVTAQLTQSLKQAEDEVAR AILQYRSLGSLPDNKLAALKGLEKLQLELDDTMKRLKREQTLVFRKTTKDSFKLGIQQ GIGELADAALPFYADLKPEGIDKLATKVFTIVDTNALDFMAQYNLTLAGDVHRELADG IKRTILNGIATGKGADDIVRDMGKVIVDKDSFRQAGSRVFSKAQYRMEMIARTEVLRA HNMGRLKFHERVGIQKLEWLAMEDERMCPVCGGLDGKTFPIDKFPQQPAHPHCRCTNI VAWPMTVCGSEMAAKAATQASQGDACILPPHVLEGMADAQAKENAKLKSAFENGDIAD LGSLTVKQLQTLAKQNGVAIARTKADFIKLLDLAEPGIDHGDLAGAALSAKLKEHKIG LLRTKEELVELLGLKQAELKQAKLLAAQMAKIPPAEGLEGMTAQQLKEMTKENGISLN MTKQETIELLDKLEPGVDHSGLMGKELAAAKQKHGIGILKNKQQLVEALQKKAGADMA ESVKKKAVDEAKQKLILKQKTALEDAAKAVVVPDTPTGYKDFLDAIAKAEQAVSGGTD LPQELLAAHSKEIALKKQLFQDQVGKLKSAELKTLAKETKVQYWQWANKDELTTLFTE TDPTKIKAVQASIDAKHAAWAEKHGGKKKTAPAKPATPKKEPPKSAPQQSPVKPTEAK IGKKGAEFATVDTAWQQKSLPSKFKKSGKAAVGGAHEKEFWTDENGDKWLFKPIGRKD DEFIAFGEEAAYKIGRLIDPHSIEVRTIQLNGRTGSIQKWRTDLRDDFDFRNILPQDL TTIELEQIQREHVVDWLIANHDGHSKQFIRARDGRVYGIDKGQAFKFLGQDKLSLDYH PNGVCGEEEPFYNKVFRAAKEGKVRVDPNATLRYIQEVEKIADEDYLDLLRPYAEGRF AKDPAGLRHFYDLALERKHNLRRDFEAYYADVLGDRGFRFGKLSTATGKKKLLSSAEE ALVEEARKLGWQGKTLPFDSGDVEDQNALIFTESFKGKKRTVVKMKIRPDTDRRIDEV LRRYVQTAAGEKGQPLVEDSFFPTILDAVKNVNFHVGDGKYNRTKIDKALRLRKKLET LQKSADPKVKEMADHYLKWVKEIEESVDWDRATNGVFEQYLPKLDAQKPKEKPPFKVE RGKVTHTKRRIGSGTITVEADDIDNRTLFNHNSRMQDGHQYTVTFEDGTRVRYRPWSD TNLYAQRGELEMILDGDATPGRVEAMLEKLEQLGIDTRVATAENAEQMYLEKLAYIRK TDKSADYKRLQKSLDDRNATSSERVQALRGYWQKELGVQDITQLSGYNPLGEYQAGFL DRDAKGGYRHQLRFDITEEDLEKQMKGYSLVHDLTNGESMSGFIDLIMENNGAMVSTV EKMRMGVAPGGMSPVADMQTGGASYFFTRIKKQPASDASPALYFKKQMLRRMDAISYD HDAYGKVIDDYVQRNRGASIDDWKRFSQRHGNETIFKYSVTLLDNIEFIVARSDNERR EIIQSFTRRGIKKLPDGRKVEDIVHTPQSWSKRKQ" misc_feature complement(2028572..2028919) /locus_tag="Deba_1819" /note="Phage Mu protein F like protein; Region: Phage_Mu_F; cl10072" /db_xref="CDD:142383" gene complement(2029393..2030901) /locus_tag="Deba_1820" /db_xref="GeneID:9494286" CDS complement(2029393..2030901) /locus_tag="Deba_1820" /note="KEGG: dde:Dde_1908 hypothetical protein; SPTR: Q310E1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807779.1" /db_xref="GI:302343250" /db_xref="GeneID:9494286" /translation="MESTAHQDEQPESLDTTGFVIAPLAAAAALDSAAFSKVNAAEAI PATWEERARKAWEYYVEEPLVKNCVNSWRTFAVGDEIKITSDDETLKEQALEAAWRLN ITQFIKDMVLQLLVKGDAIGFKRFTKSGQDIEELVCVNPVSVKVKYAQGELIEARQFP EDTPGGGESIPLPVEQVVHLKWDAPAFSPRGNSLVLPAFQAIELLRDYRRAEQAIAKR WATPFRLLKVGGAFGQKMVMPDQRMLEQVRDMVNKMDMKSGLVVPFYVNVETHGTDGQ VLNVEDKVKEVKEDIVVALGLSRSLVTGDGPNFATASVSMQKMMVMIREIKQAARKLL DWVFDDWMELNGHGDKSIQFIFNDLDPSDAVDFKKLLIELYDRKLISRSSLQLKMDLD PDIEAANRETERKQIDLMDEKQVKPVVDMVVSGILSVPRARKMLGIPAEDDEPTAEAA LVWSGDLESTGIAAVCDECSHFIADTNHCRVHNSERTFDAPACRFIDRREPR" misc_feature complement(<2030146..2030589) /locus_tag="Deba_1820" /note="Phage portal protein; Region: Phage_portal; pfam04860" /db_xref="CDD:147162" gene complement(2031065..2032588) /locus_tag="Deba_1821" /db_xref="GeneID:9494287" CDS complement(2031065..2032588) /locus_tag="Deba_1821" /note="KEGG: dde:Dde_0917 hypothetical protein; SPTR: Q314C8 Putative uncharacterized protein; PFAM: Terminase-like family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807780.1" /db_xref="GI:302343251" /db_xref="GeneID:9494287" /translation="MAVTDKERKLAATLSDPVLWGQAYLYNRDGSGRDYWPHQVEDLR CPAKNIIHLDGRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIEEIEFQLD TNPDLMNSIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGRVWVD EGAWLTERAWKALRQCLKAGGTLRIYSTPNGLRDTTYYRLTSSDQFHVFRWPSWLNPL WTEDREAELLEFYGGRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVIT DSEMRDCDTEEAAHDRLEMLLNLTPRSGQFWVGGDLGYTNDPTEIVVFQEMEIGERTL LKMILRVHLEHVSYPHIAQIIALLERYYTPAGIGVDNGGNGLAVVQELLTLDKYKGLE LEGRLKGYDFGGMTRLAVRDGKEIKKRTKELMTSLINGALQRKQVIFPSDDLEVEDQF TTHTYTLRDGKIIYSKGNDHIIDAVRCAMLIREEGNLDPVGEEVVSLKPVLTNPVFI" misc_feature complement(2031149..2032438) /locus_tag="Deba_1821" /note="Terminase-like family; Region: Terminase_6; pfam03237" /db_xref="CDD:146059" gene complement(2032588..2032866) /locus_tag="Deba_1822" /db_xref="GeneID:9494288" CDS complement(2032588..2032866) /locus_tag="Deba_1822" /note="KEGG: dde:Dde_1910 hypothetical protein; SPTR: Q310D9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807781.1" /db_xref="GI:302343252" /db_xref="GeneID:9494288" /translation="MKEILQENSDAVRQAGEALVEIGTELAAGRIENALGRLEAAQQQ YLAWAELDQAIIDIQEAVHDRKNTLAVQQILTELVGTILGSALRTGMH" gene complement(2032863..2033135) /locus_tag="Deba_1823" /db_xref="GeneID:9494289" CDS complement(2032863..2033135) /locus_tag="Deba_1823" /note="KEGG: sfu:Sfum_3799 hypothetical protein; SPTR: Q310D8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807782.1" /db_xref="GI:302343253" /db_xref="GeneID:9494289" /translation="MLKKTLEWTIPLVLAGIMTGCATYRPPAQIQSAVATVNRHTPEY VTEANKALREVGHPDAERLTGVGLRLQTAVDALDQWANGSNQEAGQ" gene 2033276..2033470 /locus_tag="Deba_1824" /db_xref="GeneID:9494290" CDS 2033276..2033470 /locus_tag="Deba_1824" /note="KEGG: sfu:Sfum_3798 hypothetical protein; SPTR: Q314D1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807783.1" /db_xref="GI:302343254" /db_xref="GeneID:9494290" /translation="MTYDRNRQQALKAYREKQENIARLIEGIRGKLEADAKQPDITWA SVGSLGHVEELLRELDEFLS" gene 2033504..2033878 /locus_tag="Deba_1825" /db_xref="GeneID:9494291" CDS 2033504..2033878 /locus_tag="Deba_1825" /note="KEGG: dde:Dde_1913 hypothetical protein; SPTR: Q310D6 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807784.1" /db_xref="GI:302343255" /db_xref="GeneID:9494291" /translation="MTECTVHQAAEAFIGYLRESGKKERTLYTYRKDLDAVEAFFGAD RQLAEIRLPQVGKFYKSDLLLKLPDGKERAERTIAKTVRVFRMMMVWARESGRIEELP LPKSTPMGHSRVKESSDEQPNG" gene 2033859..2034773 /locus_tag="Deba_1826" /db_xref="GeneID:9494292" CDS 2033859..2034773 /locus_tag="Deba_1826" /note="COGs: COG4974 Site-specific recombinase XerD; InterProIPR004107:IPR002104:IPR011010:IPR010998:IPR 013762; KEGG: sfu:Sfum_3796 phage integrase family protein; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: A0LPW3 Phage integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_003807785.1" /db_xref="GI:302343256" /db_xref="GeneID:9494292" /translation="MSNRTADLDLTGATEAFCARLSAEGRSPATIAAYRRDLALVARV AGELAPGIVCRAVTAGFLDQVFSDGAVTESERGPRSAASVHRMKAAVRAFFAWAVEVG VVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFSALRDRAMIEVLLGTGI RLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEME ALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHLYSATNDLLVVQR ALGHRDVSTTQVYTHLVDGQLEEALERL" misc_feature 2033874..2034758 /locus_tag="Deba_1826" /note="site-specific tyrosine recombinase XerC; Reviewed; Region: xerC; PRK00236" /db_xref="CDD:178942" misc_feature 2033901..2034755 /locus_tag="Deba_1826" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature order(2034339..2034344,2034411..2034413,2034612..2034620, 2034723..2034725) /locus_tag="Deba_1826" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature order(2034339..2034341,2034411..2034413,2034618..2034620, 2034627..2034629,2034696..2034698,2034723..2034725) /locus_tag="Deba_1826" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature order(2034339..2034341,2034618..2034620,2034627..2034629, 2034696..2034698,2034723..2034725) /locus_tag="Deba_1826" /note="active site" /db_xref="CDD:29495" gene complement(2035374..2035874) /locus_tag="Deba_1827" /db_xref="GeneID:9494293" CDS complement(2035374..2035874) /locus_tag="Deba_1827" /note="KEGG: sfu:Sfum_3795 hypothetical protein; SPTR: A0LPW2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807786.1" /db_xref="GI:302343257" /db_xref="GeneID:9494293" /translation="MALNKPDKETLDRWHRNEGKTEPPRRGPGAPEGNQNRLRHGIFA DRCLTPEEKVMFDAIIDRLNQDFEFNKSSDFLQVELVGVYSVKLVRAQIEGNTDAAEK LDRMIRCHMKDLKTTKIAREGEEPKGPQTSPAEWAAALLEKVAEAANAPATKTSGRKK RGKNCG" gene complement(2035966..2036244) /locus_tag="Deba_1828" /db_xref="GeneID:9494294" CDS complement(2035966..2036244) /locus_tag="Deba_1828" /note="KEGG: dde:Dde_1916 hypothetical protein; SPTR: Q310D3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807787.1" /db_xref="GI:302343258" /db_xref="GeneID:9494294" /translation="MKKKKRYANAKDVLPEELFEQIQKHYTGILWVPAPSRFYQERRD LVLALHMQGISSQEISNLAGVTTRRVNQIIAAERKQDRDRQLAAASGK" gene complement(2036248..2037018) /locus_tag="Deba_1829" /db_xref="GeneID:9494295" CDS complement(2036248..2037018) /locus_tag="Deba_1829" /note="KEGG: sfu:Sfum_3793 hypothetical protein; SPTR: A0LPW0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807788.1" /db_xref="GI:302343259" /db_xref="GeneID:9494295" /translation="MSLLKTMIKHTAGGQDASAGCEVPLLPPQPPQPAIYVSTGLDVH EIEDARDWPEDMEIDGTLCRRLSPEYFAWLRSRMVTAQAAHKAGKLPEDAWNTLRQRF NALQELAIREFGKESLQEVLQSFSPKNYRPPALRPEPQEKPVEAPRKDWIYPGNQAWK CKQPVTSQAVAKVDAIREEAMAKGWSEARLYQNQGRFRFPCGEDYGLVCFVDGDQEIG EVTERSIEIIHGPKSGRPSTLRFYNPDVPQPWMKKVED" gene complement(2037506..2040820) /locus_tag="Deba_1830" /db_xref="GeneID:9494296" CDS complement(2037506..2040820) /locus_tag="Deba_1830" /note="COGs: COG0358 DNA primase; InterPro IPR002694:IPR013264; KEGG: sfu:Sfum_3790 DNA primase catalytic core; PFAM: DNA primase catalytic core domain; SMART: zinc finger CHC2-family protein; SPTR: A0LPV7 DNA primase catalytic core, N-terminal domain; PFAM: DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core" /codon_start=1 /transl_table=11 /product="DNA primase catalytic core domain protein" /protein_id="YP_003807789.1" /db_xref="GI:302343260" /db_xref="GeneID:9494296" /translation="MSMGGTDNVREYYRLVTEIDIGDVARELLPGRITQETGQRLMCD CPNHQSQSRLSLHVMLDKQGWYCFGCGVGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQ ARDYLAKKAGLPPLSRYGLSQERLAQTEADRAFELRVKDALTALARLYHARLKESPEV LDWLKSKYALSEETIDDLLIGYADNASGAVAQLTRGEDGFSKRELAATGAFRPTSQDG LTPFFERRIVFPYWSRGRVVFMIGRKTPWTPDVGWEQGKYKKLPVHDEHQRPYVADFI NNALLFNEDCLLARPGKVIITEGVTDCLALMQLGLPTVSPVTVRIRAADWERLIPKLR GVETVYICQDNELSQAGLKGALQTARTLAEHKIDTRLVTLPLSETQISARQELTKRFG LTASVGPKELAKLLAGRPAEEIQAAEALLATAKIDVNDYIAAGHTREDFERLLAEAST PIEFGVRSLPEGAEEEERNRLLEPILREISEQSPLEQARLLKLVQERIGGGVSMGTLK EQIRAIQKDRKVEFRNEKKKAKRMSGAMPGSCRARVDEVLIDTELENGAPDYTLAAEA AYDWFTANGAQFFHTLQGEPFMYFDNAIYWMDSPDRGRKRHYAAMLYKHAGMVPTSNG GRTFFEVLPSLAMIRGQVRDHFSWLHTDVASYTVYFNLNNPEHEIAKITPDEIQIMKN GGNEDGIILDGSRKMKPLKFLPDADLEEADRLLVDLLVGNMTCPQGDRFLILSWLSCF LLIDFAGTRPMTRFEGSAGSGKTTASKITSTLLYGEPQHKKATDAANYTDGSQNPLIV LDNIEVKQMTEDLTTFMLTSITGIAKEKRKSGTDSETITERTKCLLNTTGIEPLCGEL SEILSRSFVINFDLANQASDCFLESEVISAIQQNRDLIISAIMKRTSHVLAMIRDGAQ KQVMRLLHRTMPTHGKRRCNDYLSLMYLMMLAGSEEHEVTTGLEELSPLFIEQIHSIN DTSQEMARESNPIATALASLFHAYRNAVELDEKARYGEDDRANHVVGFIERYQVRFEN ENTMEPVSAGRLLAALRRVGREFNLEFEYKKPAQLGRRISNDLDVIRDAGFDIDRQRN AHTKNFEYRIVKTANL" misc_feature complement(2039327..2040766) /locus_tag="Deba_1830" /note="DNA primase, catalytic core; Region: dnaG; TIGR01391" /db_xref="CDD:162334" misc_feature complement(<2040569..2040700) /locus_tag="Deba_1830" /note="CHC2 zinc finger; Region: zf-CHC2; cl02597" /db_xref="CDD:141551" misc_feature complement(2040035..2040373) /locus_tag="Deba_1830" /note="DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275" /db_xref="CDD:191985" misc_feature complement(2039699..2039944) /locus_tag="Deba_1830" /note="TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication...; Region: TOPRIM_primases; cd01029" /db_xref="CDD:173779" misc_feature complement(order(2039771..2039773,2039783..2039785, 2039789..2039791,2039915..2039917,2039924..2039929)) /locus_tag="Deba_1830" /note="active site" /db_xref="CDD:173779" misc_feature complement(order(2039789..2039791,2039927..2039929)) /locus_tag="Deba_1830" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173779" misc_feature complement(order(2039867..2039869,2039897..2039902, 2039918..2039923)) /locus_tag="Deba_1830" /note="interdomain interaction site; other site" /db_xref="CDD:173779" gene complement(2040817..2043045) /locus_tag="Deba_1831" /db_xref="GeneID:9494297" CDS complement(2040817..2043045) /locus_tag="Deba_1831" /note="COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) subunit alpha - helicase superfamily I member; KEGG: dde:Dde_1922 ATP-dependent RecD/TraA family DNA helicase; SPTR: C6MK30 ATP-dependent RecD/TraA family DNA helicase; TIGRFAM: helicase, , RecD/TraA family" /codon_start=1 /transl_table=11 /product="ATP-dependent RecD/TraA family DNA helicase" /protein_id="YP_003807790.1" /db_xref="GI:302343261" /db_xref="GeneID:9494297" /translation="MPKRNESNPARLRGRIERVYYAGPKFSAGRLLTPTGEEAQFAGN LFARENQPVVLLGSWSTHPKYGRQFKVDGMEHDLELDPEGLIHYLANHPEIKGIGPAK ARLIVESFGDAFEETLLSDPERIALKARLPLDAAKRLRDEWLKNRSVNTVMAWLSAFG LTHHQVTTLVERLGGNCLDILKEDPYILIREIRGFGFKKVDKIARKLGTPKDHVPRIR AGLNFCVREALDNGHCWIEYEDLVDQANLLLVMDALDSRVRIESALDALIEEQALSCD SHGGRFVVALPEIVRMERELASLFGQAETPNPHFQSVKKLDALIRRCASTLNDKQLEA VRSALKHSISLISGGAGSGKSYTISVINTICEESDLEVVLAAPTGKAAKRLEEVSGRS GTTIHRLLGYDGKGFSRSKENPIDADVLVVDEFSMVDVPLAWHLFEAVDLSRTTVLLV GDHNQLPPVGPGNILRDLIQTRSIPTVILDKVVRQAGVLKENCTAVLKGEVRKTSEAS VTGCRDWYLVDQFTDPMAARSFLLDLFLERLDALGFDIIKDVQVLTPTHKGPLGTKEL NEELQRLIQRKLWNTEVPPVAMGRRAPFLKHDKVIQTRNNYDLHVMNGAIGYVVDVLA NGTLVIDFDGMPVELEKGSPDLQDLQLAYALTIHKTQGSEFPCAVVVVHKAHSFMHHR NLLYTGVTRARRTAIVLGDHWGIQNCAKRCQVDDRRTFLPLFLDAAQHAEADFARVAE AE" misc_feature complement(2040883..2043012) /locus_tag="Deba_1831" /note="RecD/TraA family; Region: recD_rel; TIGR01448" /db_xref="CDD:162366" gene complement(2042997..2043479) /locus_tag="Deba_1832" /db_xref="GeneID:9494298" CDS complement(2042997..2043479) /locus_tag="Deba_1832" /note="COGs: COG1948 ERCC4-type nuclease; InterPro IPR006166:IPR011335:IPR020819; KEGG: sfu:Sfum_3788 ERCC4 domain-containing protein; PFAM: ERCC4 domain protein; SMART: ERCC4 domain protein; SPTR: C6MK29 ERCC4 domain protein" /codon_start=1 /transl_table=11 /product="ERCC4 domain protein" /protein_id="YP_003807791.1" /db_xref="GI:302343262" /db_xref="GeneID:9494298" /translation="MMDRITVVVDTREQEPYSFDSDKVSAVRKALPAGDYSLVGLEER VAVERKSLTDFVSTVIRGRKRFHRELEKLSAYESACVVVECNFRDLVDGRYRSDAHPH ALIGTVASIVVDFGVPVYFCSDRQAACRFVEEYLTRFHRRIARCQKEMRVTRRDSGEE " misc_feature complement(2043228..2043464) /locus_tag="Deba_1832" /note="ERCC4 domain; Region: ERCC4; pfam02732" /db_xref="CDD:190403" gene complement(2043479..2043952) /locus_tag="Deba_1833" /db_xref="GeneID:9494299" CDS complement(2043479..2043952) /locus_tag="Deba_1833" /note="InterPro IPR007731; KEGG: sfu:Sfum_3787 hypothetical protein; PFAM: protein of unknown function DUF669; SPTR: Q310C5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF669)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807792.1" /db_xref="GI:302343263" /db_xref="GeneID:9494299" /translation="MEHYENQSSSNLDLAQFDDAFETAEVEEREFEAVPDGKYQVNVD RVELTRAQTSGNPMLKWTLRILAPTHKGRLLWRNNVMASNENIKWLKQDLYTCGLQLQ KLSDLPGHLEQLLNIKLEVTKRTRGENENIYFNRRIVMADDAGAPGAAMDDMIPF" misc_feature complement(2043536..2043850) /locus_tag="Deba_1833" /note="Protein of unknown function (DUF669); Region: DUF669; pfam05037" /db_xref="CDD:191173" gene complement(2043965..2044735) /locus_tag="Deba_1834" /db_xref="GeneID:9494300" CDS complement(2043965..2044735) /locus_tag="Deba_1834" /note="KEGG: sfu:Sfum_3786 hypothetical protein; SPTR: A0LPV3 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807793.1" /db_xref="GI:302343264" /db_xref="GeneID:9494300" /translation="MLPKTKSKPKHTLSDLTALVYGPSKIGKSTWCSKADDALFLATE PGLNALEVFQTPITCWDDLLQACAEIAEGKHEFKTIVVDTVDNAYKMCSDYVCKKFKI EHESDLGYGKGYALINNEFQRVINKLAFLPYGLILISHSQERDIETRTGKHTRIVPTL PEKARKLVTGLVDLILFCDLDMKTGDDGKPVWQRVMRTKPSPNYDAGDRTGRLPEVIP LDFSSFVKAFNNTAAGAAASAARPKPEPTASAAAKPHQ" gene complement(2044762..2045778) /locus_tag="Deba_1835" /db_xref="GeneID:9494301" CDS complement(2044762..2045778) /locus_tag="Deba_1835" /note="KEGG: sfu:Sfum_3785 hypothetical protein; SPTR: A0LPV2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807794.1" /db_xref="GI:302343265" /db_xref="GeneID:9494301" /translation="MSELMTTTYSMWRLFRNCRMACKWRYIDELVPLERDPNLAFGSV IHDCLECWHGERDLAKVLDHIDRTYPNRAQDDHQQADWHLARAMMSAYAEHYPAEEFE VVALEKTFEGPIVNPATGATSRSFILAGKVDGIVRQDGQYFLLEHKTASQIDASYLER LWTDFQIILYAWYLEQTLGITVSGIIYNVLVKAKLRQGKGETEAEFEARRAELIAKSK TGKSSAKRKLPEDDDTFQQRLQEKYLEPGMFHREVLYISRDQLEELRAELWELSKAML DARRRDTFYRNTSYCFQYGRPCAYFQLCRSGGNPNVIENHFQRIAPHEELRDGAGEDA APVF" misc_feature complement(2045224..2045754) /locus_tag="Deba_1835" /note="CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641" /db_xref="CDD:193896" gene complement(2045775..2046113) /locus_tag="Deba_1836" /db_xref="GeneID:9494302" CDS complement(2045775..2046113) /locus_tag="Deba_1836" /note="KEGG: sfu:Sfum_3784 hypothetical protein; SPTR: A0LPV1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807795.1" /db_xref="GI:302343266" /db_xref="GeneID:9494302" /translation="MTHDTYKYRFDESVPAQELEDTFMLAMLAVESLHGRSRVRMESR FNLDKARRTCVIDASTDVGSDLARIFTGFATKEYGERSVLIERTQPSGCACASKHRAA PAAATAGVAV" gene complement(2046218..2046802) /locus_tag="Deba_1837" /db_xref="GeneID:9494303" CDS complement(2046218..2046802) /locus_tag="Deba_1837" /note="InterPro IPR018170:IPR014284; KEGG: dde:Dde_1928 sigma-24 (FecI-like); SPTR: C6MK24 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_003807796.1" /db_xref="GI:302343267" /db_xref="GeneID:9494303" /translation="MVSQNSYDGIDKYAADLIRHKARQLVGKAGFTEDDRPDLEQELM IDLLQRMRHFNPAKAKKTTFMARIVERHISTILEARFAQCRDWRLCQTSLNEPLDNGE GDTTERIDFLDSEGSLGGGNRETRERLAHEIRMDLDRAIASLPEELRDLCVRLHDSTM AEVAREMGIPRTTLYDRLSKLRDAFREAGLEDYL" misc_feature complement(2046239..2046757) /locus_tag="Deba_1837" /note="RNA polymerase sigma factor, sigma-70 family; Region: sigma70-ECF; TIGR02937" /db_xref="CDD:188259" gene complement(2046998..2047324) /locus_tag="Deba_1838" /db_xref="GeneID:9494304" CDS complement(2046998..2047324) /locus_tag="Deba_1838" /note="KEGG: dde:Dde_1929 hypothetical protein; SPTR: Q310C0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807797.1" /db_xref="GI:302343268" /db_xref="GeneID:9494304" /translation="MNQTSKAHLTPPKRRLIELMQDINFGRITNIPVRDGEPELTPDT VIEREIKLGGQSGPRPERDQDDFILKQEVVTLLEHLAQMGSGKVCLLEIKHGLPFLMR IEERAA" gene complement(2047645..2048709) /locus_tag="Deba_1839" /db_xref="GeneID:9494305" CDS complement(2047645..2048709) /locus_tag="Deba_1839" /note="KEGG: dde:Dde_1930 hypothetical protein; SPTR: Q310B9 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807798.1" /db_xref="GI:302343269" /db_xref="GeneID:9494305" /translation="MSDPFWAYLERLPGKSAALFDWDKALSGWDRYPLFRDHFLQLTK NHATAVDCPTECGLGCPRSVVTHAKTNIRAICNEKEYTAVQLTTKQTLIYRLKQSAIN GAICEALGIEHRDSKLDGLPYTWRLGDFIPTAGMDFPVVLTMQDSKDALTEVVRSLCL STPKPFVLIAPTRLHLSPVVETLLAQKGSLFIALNEDLYLGDAPRFLTRRDKTEIFAP LMGQVPEPDSGGTVFFPTPPGTTWPQIKIQFRDGHTVTIWAGDQSGRYTYTQMGMASR KNGNPTEQWKLLEGFANSRGEIDWRSRYASDKLKKQKQELSKHLREFFRLDDDPIEWV KDTKTYRCKFRILPEGAEVY" gene complement(2048702..2049868) /locus_tag="Deba_1840" /db_xref="GeneID:9494306" CDS complement(2048702..2049868) /locus_tag="Deba_1840" /note="KEGG: sfu:Sfum_3780 hypothetical protein; SPTR: A0LPU7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807799.1" /db_xref="GI:302343270" /db_xref="GeneID:9494306" /translation="MATFNLRRFSKPEMLRRIDRKHLIAFLEPHAAYFSARGVELPPV QQEDGLDYNALSHLLLTPDSTTPDDLAEALFYVNEVSTPEGFDSIQDEIAGTDIDVEI GENAAPADLAIQVWMADREIIEKVHAEQFFMNVRSFEYFKTKKNPLPDFVLPSEETLA ALEADLDEWFSKKRRGKYSKVFVYPKEGHTWFLVRHGKPYAREAVIEAGESTSQYFRP EKFDVLAYNPVIGEIRMNAETKGEKELYRKKFGFHLFGDEEFFNERSRFDLEPLRQIG EDALLCDDVDGIEYVRLKEVQVFWGGAHKDVEIRRSEDLFASLRDREKSLPAGGKIVK ASFQIKFDGSKTPRSVTLSSGNRAQFKRDGDAEVIERWLGLRGFIVGAGGASDE" gene complement(2049915..2050538) /locus_tag="Deba_1841" /db_xref="GeneID:9494307" CDS complement(2049915..2050538) /locus_tag="Deba_1841" /note="COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterProIPR006197:IPR006199:IPR019759:IPR015927:IPR 011991:IPR011056:IPR006200; KEGG: sfu:Sfum_3779 SOS-response transcriptional repressor, LexA; PFAM: peptidase S24/S26A/S26B, conserved region; LexA DNA-binding domain protein; SPTR: A0LPU6 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA binding domain; peptidase S24-like; TIGRFAM: SOS regulatory protein LexA" /codon_start=1 /transl_table=11 /product="LexA family transcriptional regulator" /protein_id="YP_003807800.1" /db_xref="GI:302343271" /db_xref="GeneID:9494307" /translation="MGKAKTDEITPLQRKTLEAICRFVDAKGFPPTVKELSEIFEISP ASAHDRINQLVRKGYLKREDGKSRGIAVARRPSEMAASLVSVPVVGMVAAGHPILAEE NITGQVLVESDVVRSGQHFALRAVGDSMIGAGINDGDLIIVRQQPIAEDGDIVVALLN NEATVKRLKIKDELIELVPENPEVRKIRIRPEDDLRVLGKVVGWKRN" misc_feature complement(2050332..2050514) /locus_tag="Deba_1841" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2049918..2050511) /locus_tag="Deba_1841" /note="LexA repressor; Validated; Region: PRK00215" /db_xref="CDD:178931" misc_feature complement(2049933..2050178) /locus_tag="Deba_1841" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature complement(order(2050041..2050043,2050152..2050154)) /locus_tag="Deba_1841" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 2050840..2051082 /locus_tag="Deba_1842" /db_xref="GeneID:9494308" CDS 2050840..2051082 /locus_tag="Deba_1842" /note="KEGG: sfu:Sfum_3778 hypothetical protein; SPTR: C6MK19 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807801.1" /db_xref="GI:302343272" /db_xref="GeneID:9494308" /translation="MLDVQEMNDGPGTDDLGENGKPGRLSGEARLQSAASILATAILR RKAKKACEGSELEIFEDSSPVLGEGLDSLPEQSIHS" gene 2051117..2051641 /locus_tag="Deba_1843" /db_xref="GeneID:9494309" CDS 2051117..2051641 /locus_tag="Deba_1843" /note="KEGG: dde:Dde_1934 bacteriophage-related protein; SPTR: Q310B5 Putative bacteriophage-related protein; PFAM: Protein of unknown function (DUF2924)" /codon_start=1 /transl_table=11 /product="bacteriophage-related protein" /protein_id="YP_003807802.1" /db_xref="GI:302343273" /db_xref="GeneID:9494309" /translation="MNELQNVATGGKNQDRTRNSVLRQMALLQSMSLEQLREKWLDLY GEEPPQYKKQFLIKRLAYRIQELFYGGLSEQAKVHLQQVAKEDPVATVNRRIPEERKS NEAILPGTRLVRVWNDRRYEVIVLADGYEFEGRTFRSLSAVAREITGTRWNGKVFFGL KKVYGRKAEGGSDA" misc_feature 2051177..2051599 /locus_tag="Deba_1843" /note="Protein of unknown function (DUF2924); Region: DUF2924; pfam11149" /db_xref="CDD:192712" gene 2051634..2053220 /locus_tag="Deba_1844" /db_xref="GeneID:9494310" CDS 2051634..2053220 /locus_tag="Deba_1844" /note="COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dde:Dde_1935 site-specific recombinase; PFAM: Resolvase domain; Recombinase; SPTR: Q310B4 Site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain" /codon_start=1 /transl_table=11 /product="resolvase" /protein_id="YP_003807803.1" /db_xref="GI:302343274" /db_xref="GeneID:9494310" /translation="MLDNSNVAPGKNKTLRCAIYTRKSHEEGLEQEFNSLDAQRESAE HYIEAQRMRGWTALPDRYDDGGFSGGNMERPGLRRLLADIDAGKIDVIVVYKVDRLSR SLLDFMKMIDLFNEKGVSFVSVTQHFSTTDPTGRMFLGILITFAQYEREVIAERIRDK VAAAKRRGKYCGGVPILGYDVDRDNKKLLVNPDEARTVQYIFRRFIQIGSAKKLGQEL NEQGYRTKAWTTKKGKVREGSEWNTAHIYRLLNNRIYIGEIAHKDRSYPGEHEGIIDR ATWDKVKAILEDNKPVKVSMARTKMVAPLKGVIRCGHCGCAMGPTYARKNGRHYTYYI CQKDSKRTVSRCPLKRIPAGDIEQAVIEQLSAVFRTPTLVAKTFFAARDIEQAERERL LKQKAQLEMELSQAREQALELMKPGSDQPGKAEMLTTVNRQAVDLSKQLTHVSERCRA YRGNSITEQDVSEAFQNVEGFWEDLFPVERNRLIRLLVDKVEIRETGINMELRTNGLT TLIAELAGLACEVTERRVSR" misc_feature 2051679..2052392 /locus_tag="Deba_1844" /note="Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961" /db_xref="CDD:32144" misc_feature 2051685..2052110 /locus_tag="Deba_1844" /note="Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768" /db_xref="CDD:58117" misc_feature order(2051697..2051699,2051703..2051705,2051925..2051930, 2051937..2051939) /locus_tag="Deba_1844" /note="catalytic residues [active]" /db_xref="CDD:58117" misc_feature 2051703..2051705 /locus_tag="Deba_1844" /note="catalytic nucleophile [active]" /db_xref="CDD:58117" misc_feature order(2051922..2051924,2052054..2052059,2052063..2052068, 2052078..2052080) /locus_tag="Deba_1844" /note="Presynaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature order(2051940..2051942,2051955..2051960,2052042..2052044, 2052051..2052056,2052063..2052068,2052075..2052077, 2052084..2052086) /locus_tag="Deba_1844" /note="Synaptic Antiparallel dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature order(2052009..2052017,2052042..2052047,2052054..2052059, 2052066..2052068,2052078..2052080,2052087..2052089, 2052099..2052101) /locus_tag="Deba_1844" /note="Synaptic Flat tetramer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature order(2052009..2052011,2052057..2052059,2052066..2052068, 2052078..2052080,2052087..2052089,2052099..2052101) /locus_tag="Deba_1844" /note="Synaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature order(2052081..2052083,2052099..2052104) /locus_tag="Deba_1844" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:58117" misc_feature 2052207..2052500 /locus_tag="Deba_1844" /note="Recombinase; Region: Recombinase; pfam07508" /db_xref="CDD:191763" gene 2053217..2053639 /locus_tag="Deba_R0033" /db_xref="GeneID:9494311" CDS 2053217..2053639 /locus_tag="Deba_R0033" /note="KEGG: sfu:Sfum_3775 phage-related protein; SPTR: A0LPU2 Putative phage-related protein; tmRNA as predicted by Rfam (RF00023), score 199.67" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807804.1" /db_xref="GI:302343275" /db_xref="GeneID:9494311" /translation="MKMKPTITVADNGNLQIHIPMLIRRMRGRKTVIAPQALDGDIPG AQEPVQSAVLQALGRAFSWADILESGQIKSISELARTLDVDGSYVARILKLTTLAPDI VEALINGEEPNGLSLAKLTQTFPEDWAEQRRQFGFATD" gene 2054583..2054888 /locus_tag="Deba_1846" /db_xref="GeneID:9494312" CDS 2054583..2054888 /locus_tag="Deba_1846" /note="COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR020816:IPR000119:IPR010992; KEGG: dol:Dole_1031 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: C8QX16 histone family protein DNA-binding protein; PFAM: Bacterial DNA-binding protein" /codon_start=1 /transl_table=11 /product="histone family protein DNA-binding protein" /protein_id="YP_003807805.1" /db_xref="GI:302343276" /db_xref="GeneID:9494312" /translation="MALTKDHIISEVFERTQLPKSRSREVVETTLEIIKNSLADSDDL LISGFGKFLVKDKRARRGRNPQTKADMKLRARKVVVFKTSGVLRKHLNGEEDLSEQQ" misc_feature 2054592..2054846 /locus_tag="Deba_1846" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature order(2054592..2054600,2054664..2054666,2054709..2054711, 2054715..2054717,2054721..2054726,2054733..2054735, 2054745..2054747,2054751..2054756,2054760..2054762, 2054769..2054780,2054808..2054810,2054820..2054822, 2054826..2054828,2054835..2054837) /locus_tag="Deba_1846" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" misc_feature order(2054592..2054597,2054604..2054606,2054613..2054615, 2054625..2054627,2054667..2054669,2054676..2054681, 2054688..2054693,2054703..2054717,2054724..2054729, 2054742..2054744,2054808..2054813,2054823..2054825, 2054829..2054831) /locus_tag="Deba_1846" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" gene complement(2054985..2055752) /locus_tag="Deba_1847" /db_xref="GeneID:9494313" CDS complement(2054985..2055752) /locus_tag="Deba_1847" /note="COGs: COG0797 Lipoprotein; InterPro IPR005132:IPR007730:IPR009009:IPR012997; KEGG: dal:Dalk_2877 rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; SPTR: Q1JY74 Rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Sporulation related domain; TIGRFAM: rare lipoprotein A" /codon_start=1 /transl_table=11 /product="rare lipoprotein A" /protein_id="YP_003807806.1" /db_xref="GI:302343277" /db_xref="GeneID:9494313" /translation="MHRNGIVWPKAIIVACLVGMALLTLVGCAKTPSVPPPTKPSDRV TTKPYTVFGKTYYPLPNADGFKETGVASWYGGQFHGKRTSNGEIYDMESMTAAHKLLP FGTYVQVTNTSNGKSTVVRINDRGPFVSDRVIDLSKAAAREIDMIGPGTASVEVLALG YREDQLPGGQIPSPSSAPWGPFTVQVGAFTQESNAWRLAASLRAKYGEVNVVNYDHGD KRFYRVRVGKEQDLNKAQSLEASLRSSGFEQAFLVVW" misc_feature complement(2055285..2055554) /locus_tag="Deba_1847" /note="Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; cl04011" /db_xref="CDD:186611" misc_feature complement(2055051..2055548) /locus_tag="Deba_1847" /note="rare lipoprotein A; Region: rlpA; TIGR00413" /db_xref="CDD:161866" misc_feature complement(2054994..2055215) /locus_tag="Deba_1847" /note="Sporulation related domain; Region: SPOR; cl10051" /db_xref="CDD:186898" gene 2055861..2056727 /locus_tag="Deba_1848" /db_xref="GeneID:9494314" CDS 2055861..2056727 /locus_tag="Deba_1848" /note="COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685:IPR010920:IPR011014:IPR011066; KEGG: hut:Huta_2837 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: C7NQI1 MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel" /codon_start=1 /transl_table=11 /product="MscS Mechanosensitive ion channel" /protein_id="YP_003807807.1" /db_xref="GI:302343278" /db_xref="GeneID:9494314" /translation="MQFGLADLANMWSWLENHQLILAAVAIVGALVAAKLVDIAFSKA FTIASKRTQTDLDDKVLDTLHRPIQVVVLLIAGDLLADALLRDHALATNLISKSIYTL IVVLYTWTLLQISRTVFRHFTYSSRVKSGWRQLLPLFNNIATLLIILHGVYVLLSFWG INVTPLMASAGIATAVVALASKDTLANFFGGISIFVDRPYQIGDYIVLETGERGEVVA IGMRSTRILTRDDVLISVPNWPADRGRVMHEINKNIHAGFKRAGIDIPYPQRVVHLRP APGASLDDDAGD" misc_feature 2056284..>2056577 /locus_tag="Deba_1848" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" misc_feature <2056578..2056700 /locus_tag="Deba_1848" /note="Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: COG3264" /db_xref="CDD:33075" gene 2056941..2057513 /locus_tag="Deba_1849" /db_xref="GeneID:9494315" CDS 2056941..2057513 /locus_tag="Deba_1849" /EC_number="2.4.2.9" /note="COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: sfu:Sfum_1064 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: uracil phosphoribosyltransferase; SPTR: A0LH56 Bifunctional protein pyrR; PFAM: phosphoribosyl transferase domain" /codon_start=1 /transl_table=11 /product="uracil phosphoribosyltransferase" /protein_id="YP_003807808.1" /db_xref="GI:302343279" /db_xref="GeneID:9494315" /translation="MITPASRQAPKICYNAGHIAKGIDAIARSVVAKRPDPDGLAIIG IHTGGDILLRRIIQAISRRIGRLPVVDVGLLDISFYRDDWSRLSQAPTVRATIIPFDI DERHILLVDDVIFTGRTIRAGLEAIFSLGRPASVDLAVLVDRGHRELPIQPNYVGLTL PTQLQQSVNVFLHEDPQADYALLEDAKYSV" misc_feature 2057016..2057495 /locus_tag="Deba_1849" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 2057697..2058146 /locus_tag="Deba_1850" /db_xref="GeneID:9494316" CDS 2057697..2058146 /locus_tag="Deba_1850" /note="KEGG: dat:HRM2_35720 methyl-accepting chemotaxis protein; SPTR: Q1NWQ8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807809.1" /db_xref="GI:302343280" /db_xref="GeneID:9494316" /translation="MLKVDNNLFFANAVTGKDRAEQPVSGQAASFAQYLQSAVEEQSS VQAGDVSGLDCPPCDDRGDTRDAILGLAGELLENIESFASALGDVNRSLKDVEPMVGQ MQTLAERLNALNDDGALTADSELKGLLSDVISQAQAEVMKFRRGDYA" gene 2058146..2058295 /locus_tag="Deba_1851" /db_xref="GeneID:9494317" CDS 2058146..2058295 /locus_tag="Deba_1851" /note="KEGG: hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807810.1" /db_xref="GI:302343281" /db_xref="GeneID:9494317" /translation="MANANGDAAPEREDICQVLARIVRAIEALKPGQAERVQDPLRRN LLKKA" gene complement(2058486..2059016) /locus_tag="Deba_1852" /db_xref="GeneID:9494318" CDS complement(2058486..2059016) /locus_tag="Deba_1852" /note="COGs: COG0703 shikimate kinase; InterPro IPR000623; KEGG: mba:Mbar_A3183 shikimate kinase; PFAM: shikimate kinase; SPTR: Q466X5 shikimate kinase; PFAM: shikimate kinase" /codon_start=1 /transl_table=11 /product="shikimate kinase" /protein_id="YP_003807811.1" /db_xref="GI:302343282" /db_xref="GeneID:9494318" /translation="MTEPAHGPRANICLIGMAGVGKSYLGRRLAARLGWTFLDVDELM EKRAGMGLQQIVAQKGEEGFKALEERTILGLTDLRRHVVATGGSAVYSAKAMGHLRAI GHVVYLHDQPANIAARVDNLPTRAVIGLGDGSLERLFTARRPLYEAAAHLRLDLDGPG GAEATLAALEALAQNI" misc_feature complement(2058543..2058986) /locus_tag="Deba_1852" /note="Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the...; Region: SK; cd00464" /db_xref="CDD:30188" misc_feature complement(order(2058642..2058644,2058663..2058665, 2058945..2058962)) /locus_tag="Deba_1852" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:30188" misc_feature complement(order(2058894..2058896,2058900..2058902, 2058948..2058950)) /locus_tag="Deba_1852" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:30188" misc_feature complement(order(2058591..2058593,2058753..2058761, 2058813..2058815,2058822..2058824,2058894..2058896)) /locus_tag="Deba_1852" /note="putative shikimate binding site; other site" /db_xref="CDD:30188" gene complement(2059009..2061171) /locus_tag="Deba_1853" /db_xref="GeneID:9494319" CDS complement(2059009..2061171) /locus_tag="Deba_1853" /note="COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) subunit alpha - helicase superfamily I member; InterProIPR003583:IPR003593:IPR000445:IPR010994:IPR 006345; KEGG: dol:Dole_2348 RecD/TraA family helicase; PFAM: helix-hairpin-helix motif; SMART: ATPase AAA; Helix-hairpin-helix DNA-binding class 1; SPTR: A8ZVG5 Helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; PFAM: Viral (Superfamily 1) RNA helicase; TIGRFAM: helicase, , RecD/TraA family" /codon_start=1 /transl_table=11 /product="helicase, RecD/TraA family" /protein_id="YP_003807812.1" /db_xref="GI:302343283" /db_xref="GeneID:9494319" /translation="MSEQTNTTMRGRVERITFHNPENAYTVAKVAVAGQPGLMTLVGK MPGVAEGQEVEASGRLVLHAKFGQQLEVESCHLAQPGDAEGVRRYLASGLVKGVGPVM AGRIVDVLGEGAIEKIVNDPRSLTAVPGVGAKRAASIAQAVISQGMLREAMILLQGHG VGPGTVMRIHRRFGDQTLAVAQNEPHRLAAEVRGIGFATADQIARRLGMAADHPSRVA AGLLYSLRQAGDEGHVFLPYDELMPQAAGLLGLPQAALGPAFARLHQERRIVVEEAFG PRAVYLAGMLALEQSAAQSVARLSRGRGLLAPERVAKAVEWAGRSLHFEPSTGQAEAL RALLAAPLAVLTGGPGTGKTTLVRALINIAQRMGQNVALAAPTGRAARRLAEASGRPA QTLHRLLEFSPKENSFLRGADRPLEGQLIIVDEASMIDIWLGAHLLAATADGACLVLV GDADQLPPVGPGLFFRQIIDSGAARVGRLTEIFRQGRASLIVENAHRILGGRMPTLPA PGQEADFYFLEEPDPERAAELVRDLVAKRLPNKYGFDPIDDIQTLAPMHKGAMGCHNL NRLLRQALNPAGQGPGPGVGDKVMQSRNNYELEVFNGDMGQVLRADDEGLAVSIDGRV VTYSLAEAAELNLAYAVTVHKSQGSEYPAVVLALGNEHFVLLNRPLLYTAVTRGKKLV VVVGSATALRRAVEHAQPIMRHSLLGRRIKALLGTDND" misc_feature complement(2059081..2061141) /locus_tag="Deba_1853" /note="RecD/TraA family; Region: recD_rel; TIGR01448" /db_xref="CDD:162366" gene complement(2061168..2064647) /locus_tag="Deba_1854" /db_xref="GeneID:9494320" CDS complement(2061168..2064647) /locus_tag="Deba_1854" /note="COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) subunit beta (contains helicase and exonuclease domains); InterPro IPR000212:IPR014016:IPR014017; KEGG: acp:A2cp1_1439 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: B8JH81 UvrD/REP helicase; PFAM: UvrD/REP helicase" /codon_start=1 /transl_table=11 /product="UvrD/REP helicase" /protein_id="YP_003807813.1" /db_xref="GI:302343284" /db_xref="GeneID:9494320" /translation="MRESIIRLERNYCVTAGAGAGKTSCLVKAYVGLLAGNDQRPPLA PRQIVAITFTEKAAAEMRGRVMDRVAALAAKEGGRWAEIINQLEWSPISTIHGFCAAL LREYGSLLGLDPDFAILDGQAFDEMLSEAVAEVLRQAMDHDDPALGRLLMHHGMDDIE AKLRALHQALATMGLETAQARRATAQAHAELIDAGPKALASMDQAARDLATALAAVAP KNKAKPPQYFNDLTAFLEQWPELRPKLAQSEPDLATAMLAHKMLGGDRGKDERIVNAR AILKNEATKIAQAAMAPLAGGLADDLFVLQERLSQAVATECARLAALSFDDLLLGALR LLRQRPELLPALRGRFRALMVDEFQDVNPVQGALVGLLCGLGSDDPGPDAPLLLIVGD RKQSIYAFRGADVSLYNQTMADFEGGGPGVLAALRRNFRSDPRLVEFFNRLFDQVFAQ GKNRQHAPHAYVDFRDDDRQRPGRAAGDFSGGPALELLHCGGDDQNAEQRRAREATAL AAHLAGLVAGGQVRPGQIAILLRKLTAVRVYEEALRRQDLDFCTVKGKGFFGCQEVAD VVMAMRALLWPDDDLAVTALLRSPLVGLSDESLLAMAHHGPQLKPSQALAQGRALPDW LPTEQHERLSMARRLLADLGPRARRMTPAELITAVIEAGDYMQVLAGLPSGEQKAANL RKLIETAREYDDGVEACLRRLMAMLAQDPGDAQAPLAGDDGQIVRIMTIHQAKGLQFP VVVLADLAGQAGGGPRALVGPDQNGVISPRPIDFASGQRLETAIHQRLSQRATAIEEA ESARLFYVACTRAQERLVLCMSAGKRPGPWQKWADAFIAGDELASHVDLGVVGDAVAD APALGPAAAWPDYLPAEAGPLAEEGRMLAQRCLIRPALGPAAVRASVSAVEDFWACPR RFFLTQRLGLDTALLPGMGGTGGDDPAQAARLGSLAHMLLQQVDLAAGAAGLELLTES LLAAGKADGGLLTQASLMAGHFFQTDLAAALAQLPPCTVFREQPFLLCLPGQGGGPGL ELRGEFDLLAPMEDGRWLIVDYKVGRRLDPAKYHGQMLIYAAALWSGGKDQAMAPPRA VLAHLGPERAALHYLEFTAAQLDQALEDLRQAAGPMADALAARELAQVAPAAGCVADG CPLGPVCAGSGAP" misc_feature complement(<2064288..2064608) /locus_tag="Deba_1854" /note="UvrD/REP helicase; Region: UvrD-helicase; cl14126" /db_xref="CDD:196784" misc_feature complement(2062653..>2063603) /locus_tag="Deba_1854" /note="UvrD/REP helicase; Region: UvrD-helicase; cl14126" /db_xref="CDD:196784" misc_feature complement(<2062119..>2063072) /locus_tag="Deba_1854" /note="helicase-exonuclease AddAB, AddA subunit; Region: addA_Gpos; TIGR02785" /db_xref="CDD:163019" misc_feature complement(<2061777..2061950) /locus_tag="Deba_1854" /note="CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641" /db_xref="CDD:193896" misc_feature complement(2061378..>2061542) /locus_tag="Deba_1854" /note="CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641" /db_xref="CDD:193896" gene complement(2064650..2067748) /locus_tag="Deba_1855" /db_xref="GeneID:9494321" CDS complement(2064650..2067748) /locus_tag="Deba_1855" /note="COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: ade:Adeh_2513 ATP-dependent nuclease subunit B-like; SPTR: Q2IKV6 ATP-dependent nuclease subunit B-like" /codon_start=1 /transl_table=11 /product="ATP-dependent nuclease subunit B" /protein_id="YP_003807814.1" /db_xref="GI:302343285" /db_xref="GeneID:9494321" /translation="MNHLLHIWPGRQALAQAQAEQARLAPGGFLLAEPAFTLDNFLPA LLQSLDQADAPGQISDLAGALLTQRLLADHPDHAEAFSGLRAGWRLPRRLWRLLVEIK AAGLGPADLRALNHEGLAGLLERYNLALAEVGLADQADGLTALIQAMNNGRAPRLLHE CAGVVVHDVLWLRTLDMRLLGGLSTCAPVTVEFCLTPGLGARGPMAALLEHTAGYLER GGGNLLVHWRDMSTGHGPLAGLAMAMLGGAESPGDPGAALELWRAAGRYGEVEALLCR AAELTAGGVDPRRIAVVFPELDIYGQMAVDVAKRLELPLDYRSERPLAASPLVLAVLG LLELPGLDYERHALSAVWHSPYMGPALARLAGLERAPRAESLLAAAGYIDARQTPPQT RLAGEEGVALAKACAWLMERMRPLARRQGLPDFVGAALALLAELNLGAVVLAEPSRPE FIARDLAALAALEDALAQLGRAAESVRQGRAMSPGRLLSLLRQALRLQSAPGPGGQRG GVRLLRLDQAMGLRLEYVLAGGLDLGQFPQKPQAPNMLSSQERLALGQKAGLPVWRTD DEEYAGQMLRLCWLLAGVERGAVLSCAAADGQGASQEPAFFLREAARLLQRRLPEPRG GVYGQAPGLATAVDAQGLLGGLSHGLLRRRGRADLAQAALHHWLGLDAGLARRWRRLA DLAAIERRRLWLDLLPGGRRQELADEYGGRLHSPQAQALLAEVLAQPAWRTLAPTQLE AMAACPMAWFFGRLLGVDALEEPGLALAGRDEGQMVHTALARFFAPEAFDPRWDREAR RARLEDCLERAWAEAGKNQASHGFARSWRKRAVCELLAATLERMWSALEGGWRPVAVE ERIDDWGLSLDVGDGPALVLGGVLDRLDAGQEDGRQALRVVDYKHAANPDLYKPQAKQ EHWFVSAFQLPLYMAAAAKQRPAEVALGQIVCTKNPEKGIIQAREELPSDFFAENRDE RARIAQNGGANLYNAVAALWARVSAGQLSASPAKAACEHCDFGTICRAKASPTAEQGD GA" misc_feature complement(<2065361..2065552) /locus_tag="Deba_1855" /note="CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641" /db_xref="CDD:193896" misc_feature complement(<2064947..>2065240) /locus_tag="Deba_1855" /note="CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641" /db_xref="CDD:193896" gene 2067863..2068465 /locus_tag="Deba_1856" /db_xref="GeneID:9494322" CDS 2067863..2068465 /locus_tag="Deba_1856" /note="KEGG: sfu:Sfum_1914 hypothetical protein; SPTR: A0LJJ7 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807815.1" /db_xref="GI:302343286" /db_xref="GeneID:9494322" /translation="MSDLINFPGEPRAVAADNVIADKPMRLRWGDWRTHKVLQAHVGA AAAYEDQRREFLSRGQSPAAQMPPGFELDGGEKDTALALLRFRGDEGKQRRLMLLAVL TEALISVPCAILRTDLIRRVYQQVGELSRELGHRWSGDCQRLLPPLNEDAHEPDFLAK ALINIDNLREFFDTATRIADERYQKMAKSYVFYYPRGFSA" gene complement(2068469..2069593) /locus_tag="Deba_1857" /db_xref="GeneID:9494323" CDS complement(2068469..2069593) /locus_tag="Deba_1857" /note="COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680:IPR011059; KEGG: mta:Moth_0462 amidohydrolase; PFAM: amidohydrolase; SPTR: Q2RL96 Amidohydrolase; PFAM: Amidohydrolase family" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_003807816.1" /db_xref="GI:302343287" /db_xref="GeneID:9494323" /translation="MPAEGEPPAKGPICLVAAGLAGAETTADQPPAVLVRDGRVAALG HEALAAADCPRLDLPGLWLSPAPLDAHVHLLMRSTLERSLDEFHQAGVVAVRDLGVRP VDPTPGGRPDKAPLVVASGPGLGVKGPGSCWLAHKLQTPDDFAQAARRAVAAGVDLLK VFVSGLLSFEYPGQVEHPDAVGEAQLRAVTAVAREAGLTVAVHASGVAAVSRAVACGA RSVEHGFFLNEPTWEAMAERGVSWLPTVAPIVTHAEDQDGRHDQATIDNLRRIAHRQM KDLPRGHALGVELVLGTDAGSYGLPHLLAVRREIDLWIEAGVPSETIFDAATSRAARL MGLGGQVGVIAKGARAWLLGLEHDPRRRPELLCRPRWRNF" misc_feature complement(2068520..2069428) /locus_tag="Deba_1857" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature complement(order(2068712..2068714,2068925..2068927, 2068985..2068987,2069375..2069377,2069381..2069383)) /locus_tag="Deba_1857" /note="active site" /db_xref="CDD:30035" gene complement(2069583..2070065) /locus_tag="Deba_1858" /db_xref="GeneID:9494324" CDS complement(2069583..2070065) /locus_tag="Deba_1858" /note="COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR008254; KEGG: nth:Nther_0880 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; SPTR: B2A899 Flavodoxin/nitric oxide synthase; PFAM: NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="flavodoxin/nitric oxide synthase" /protein_id="YP_003807817.1" /db_xref="GI:302343288" /db_xref="GeneID:9494324" /translation="MPSILVAYYSHGGNTRKMAQRISQAATEAGCQVEVRKVTDISVE SLAQYDGVILGSPCYFGVMAAEMKSFIDKSIKLFGKGELTGKAGGVFCSTGGIGGGGE LTMISLLAGLMIHGMVVQGSRKGGHFGPLAIGEPDERALAECDQYGQLVAGLALRLAR " misc_feature complement(<2069703..2070065) /locus_tag="Deba_1858" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene complement(2070098..2070412) /locus_tag="Deba_1859" /db_xref="GeneID:9494325" CDS complement(2070098..2070412) /locus_tag="Deba_1859" /note="InterPro IPR007607; KEGG: tye:THEYE_A0051 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: B5YGX5 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF583" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807818.1" /db_xref="GI:302343289" /db_xref="GeneID:9494325" /translation="MGGGNKMTILAAGTYIHGDLFSDDLMIIEGGVEGNVVGNRVIVK SQGWVHGELTCKSLSIELGGVVNGMVRVSSTQNLLGAMHLTQLPPEDDQRALPAAEFS EE" misc_feature complement(2070200..>2070388) /locus_tag="Deba_1859" /note="Polymer-forming cytoskeletal; Region: Bactofilin; cl09137" /db_xref="CDD:195802" gene complement(2070414..2072207) /locus_tag="Deba_1860" /db_xref="GeneID:9494326" CDS complement(2070414..2072207) /locus_tag="Deba_1860" /note="KEGG: dol:Dole_2202 hypothetical protein; SPTR: A8ZUH4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807819.1" /db_xref="GI:302343290" /db_xref="GeneID:9494326" /translation="MIRLGLISALVAAMLVAAVAQAAQPQRPSRHHQVFFADTPDELS VYRVYGQVAGKTLMIIGGIQGDEPGGFLSADLYADINLAKGNLIVVPRANFYSIILRH RGPDGDMNRQFADQVTAKRHAKIINVLKGLIAESDLLLNLHEGSGFFRPTWEGPMANP MRFGQSIIADADRYVTPNGQVIELQTIAERVLRRVNPLIKDAKLKFLFNNHRTLSRDS HHKEQRRSATYYALTQRHIPAFGVETSKSLPDVAQKIGLHKLVINAFMEDMGITPMNP GVYLGKPNLRYLVVGVNDQLPVVVSPGDALRVNAGDSVNVMHIEADCERGLSCDILGL GSVNDMRQAFAVNKNTKIVVRKDHQEIGRISLLVETAEPKAAVLRAKRLYFLVQTQDE RRLLAAGETLRLVRGDKLQIVDLISNLDDQRSIEVNFKGFVPAKGRNAGEDRGHLIDT TRDLLPRFSSCAKASPAGLECYRVVATQNGAPIGEIGVEVAPAALDYLVVSNGPGPKM VYYNGETIRSAGGQRIEIIDLKTNVAPEGNLSLALYDDGGGKISLDGRAVDPASEPVR RLVANGQRQFRLVVLRREQPIGEVGLDLGGN" misc_feature complement(2071443..2072039) /locus_tag="Deba_1860" /note="The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key...; Region: Peptidase_M14_like; cd00596" /db_xref="CDD:133066" misc_feature complement(order(2071479..2071481,2071761..2071763, 2071776..2071781,2071875..2071880,2072007..2072009, 2072016..2072018)) /locus_tag="Deba_1860" /note="active site" /db_xref="CDD:133066" misc_feature complement(order(2071779..2071781,2072007..2072009, 2072016..2072018)) /locus_tag="Deba_1860" /note="Zn-binding site [ion binding]; other site" /db_xref="CDD:133066" gene complement(2072204..2073016) /locus_tag="Deba_1861" /db_xref="GeneID:9494327" CDS complement(2072204..2073016) /locus_tag="Deba_1861" /note="KEGG: mpn:MPN453 30K adhesin-related protein; SPTR: P75330 P30 adhesin" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807820.1" /db_xref="GI:302343291" /db_xref="GeneID:9494327" /translation="MAMKQGLDIVLVRKSGPVRNLRFGSWFIGLIGLILLLLIAGLVA GGFLFYKQSRLLVDYGEQINLLMLRAERLEYLSQEQETRELLAEEALKAKAEAQAQKA SAAEPTPTPSPQPPQEEDPTESEVIALSNISRQIEGGEMVVNYAITNKLDDGDRAEGY IMVVAHGQRRGKPWLESRPPMRLSALGRPINYRRATPFAIQRYRQLTARFSTADSKFD RLEFFIYSRRGQLLLTQTVLLDEDKQGQEAPEQATSAPQESSSEKRQPESGE" gene complement(2073051..2074538) /locus_tag="Deba_1862" /db_xref="GeneID:9494328" CDS complement(2073051..2074538) /locus_tag="Deba_1862" /note="COGs: COG3034 conserved hypothetical protein; InterPro IPR005490; KEGG: sat:SYN_02167 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: Q2LTB1 Tetratricopeptide repeat family protein; PFAM: L,D-transpeptidase catalytic domain" /codon_start=1 /transl_table=11 /product="ErfK/YbiS/YcfS/YnhG family protein" /protein_id="YP_003807821.1" /db_xref="GI:302343292" /db_xref="GeneID:9494328" /translation="MIWNRFSSDFPQLHRLQGLFFTLAAFLLAALSSPCAAQTQPAAA EQPTSFIYCYQGRVDDPAIIVVDKSLQRAMVFKYLGDMALQWEFPCGTGEKEGDKAQS GDQKTPEGVYFITHRYEDRKVTVFGDRALHLDYPNAIDCVDGRQGDGIYLHGTNRDLR PRSSNGCITLDNRDLARLSQMIRDQSTPVLVLDRFQLPKPADLERACQFLQRLRFSNF ALEQESASHALAVKQGGCPVFDGVQDLPNRLTALDGKGHAGGVVQKVTGAALWGAGDQ WIVLANLEIAGRDGKTLPVSRRLYFQGHALDSLSLVRSQWVLEDPASVKLLASWLPPS GAKTASNEPVRATVEAKAKPVRAAERPRPTPAKVEKPAKAEKEIKALLNAWLGAWEGK KLKRYMSYYAADFYSDGMNKVEWRNKKAYLNKVYKVLRVSAKDVKINVNGSTAKVKFV QYYQSDWHKDVGVKTMTLVQRKGDWRIKSEQWRAITPARRSQQRR" misc_feature complement(2073966..2074358) /locus_tag="Deba_1862" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene 2075021..2077456 /locus_tag="Deba_1863" /db_xref="GeneID:9494329" CDS 2075021..2077456 /locus_tag="Deba_1863" /note="COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR017441:IPR006176:IPR006108:IPR001753:IPR 016040:IPR008927:IPR013328; KEGG: chy:CHY_1609 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; enoyl-CoA hydratase/isomerase; SPTR: Q3ABP7 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding protein" /protein_id="YP_003807822.1" /db_xref="GI:302343293" /db_xref="GeneID:9494329" /translation="MSLEIKKVGVIGAGVMGATIAAHMASVGLPTVLLDIVPFKMPDE LAKKGVKEDSKAFRNFFAAKGLEGVKKSKPASFYTPDDAELVSIGNLEDDFDKLADCD WIVEVVVELLNIKKDLLSRIDKVRKPGAIVTTNTSGISVAAMSAHLSEDFQKHFFGTH YFNPPRYMKLFEIIPGPKTDQAVLDDMAKFAEEKLGKGVVWAKDTPNFIANRVGIFAG NYINKLIDEMDLTFEEVDALTGPVIGHPKMASYKLSDLVGLDTSVHVADNVYEGAPND ERREIFTAPAWIKKMLEMGLLGNKTKAGFYKKAKDANGKKVTLVLDRKTMEYREPIKP QFESLDAAKKAGGLTEKMKTLYYGTDKAAEFNFKSQSEILLYAANRIPEIADDVVNID NAMKWGFNWKLGPFETWDALGVEESAAKMKQAGYKIPAWVEEMLAGGNKTFYKKEIGK LLYYDLASKSYQDVPVSADIILLPSLKERNKVVASNSEATLIDLGDGVACLEFHSKMN ALGDDMVSMIGQACDIVMEKFDGMVIANHGNAFSAGANIFFVLVGAMEKKFDQIEQGV KTLQDTLMKMKYLPKPVVAAPHAMALGGGCEICLHSDKVVGAAETYAGLVEVGVGLLP AGGGTKELLIRNTHERVFTVGKGGLVSKEIWLLPFVARAFQNIATAKVGTSFRDVQKA GIFRDSDVMVPNADYRIKKAKDMVLAMNLVGYEPPKPLNKIRVMGRDALAVFKYGLYN MNKSGYATPYDVVVGTEVARVLTGGDVLADTFVSEQHLLDLERESFVRLCGNKQTQDR MEHMLKTGKPLRN" misc_feature 2075030..2075959 /locus_tag="Deba_1863" /note="3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Region: FadB; COG1250" /db_xref="CDD:31442" misc_feature 2075039..2075635 /locus_tag="Deba_1863" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 2075642..2075941 /locus_tag="Deba_1863" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" misc_feature <2076179..2076355 /locus_tag="Deba_1863" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" misc_feature 2076491..>2076916 /locus_tag="Deba_1863" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(2076539..2076541,2076545..2076547,2076635..2076637, 2076647..2076661,2076788..2076790,2076794..2076802, 2076866..2076871,2076878..2076880) /locus_tag="Deba_1863" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(2076653..2076655,2076800..2076802) /locus_tag="Deba_1863" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(2076740..2076742,2076764..2076766,2076827..2076838, 2076872..2076883,2076899..2076901,2076905..2076913) /locus_tag="Deba_1863" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 2077582..2078769 /locus_tag="Deba_1864" /db_xref="GeneID:9494330" CDS 2077582..2078769 /locus_tag="Deba_1864" /EC_number="2.3.1.9" /note="COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: drm:Dred_0348 acetyl-CoA acetyltransferase; SPTR: A4J1E3 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_003807823.1" /db_xref="GI:302343294" /db_xref="GeneID:9494330" /translation="MKEAVIVAACRTAVGRAPRGTLRHTRPEYMGSVVLQEVIKRTPG LDPKEIDDVVIGCSFPEAEQGMNMARVLIQKLGLPDDISGITINRFCSSGLNAISMAA ERIMVGAADVMVAGGVESMSMVPMGGNIMSVEPEIAGSRPWDLEGMGMTAENVSADFN VSREDQDAFAVESNNKALAAIKSGAFKDEIVPLTVTKQRQKANGSFELYDEIFDTDEC PRGATLEGLAKLKPAFKVGGCVTAGNASQTSDGAAAVMLMSKEKAKALGLKPMATYRG FAVGGVPGKYMGIGPVKAIPKALKITGLSLSDINLIELNEAFAAQALYCIRELGLNKD LINPHGGAIALGHPLGCTGAKLTTQLLYEMNRRGPECRYGLVSMCIGLGMGAAGIFEK EQY" misc_feature 2077582..2078754 /locus_tag="Deba_1864" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK07661" /db_xref="CDD:181072" misc_feature 2077594..2078757 /locus_tag="Deba_1864" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(2077651..2077653,2077735..2077737,2077780..2077782, 2077789..2077791,2077801..2077803,2077834..2077845, 2077867..2077869,2077888..2077893,2077900..2077902, 2077945..2077947,2078410..2078412,2078416..2078418, 2078422..2078424,2078482..2078484,2078725..2078730) /locus_tag="Deba_1864" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(2077852..2077854,2078620..2078622,2078716..2078718) /locus_tag="Deba_1864" /note="active site" /db_xref="CDD:29411" gene 2079037..2079372 /locus_tag="Deba_1865" /db_xref="GeneID:9494331" CDS 2079037..2079372 /locus_tag="Deba_1865" /note="KEGG: hypothetical protein; SPTR: C5M0N0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807824.1" /db_xref="GI:302343295" /db_xref="GeneID:9494331" /translation="MVDFPTYLRPVDLRVDKKPQVRQNGGEQSSGQTAAQAASHEGQR SADKVRLLFPRIAAMQGLEEAPGLQEAEDALAQLREDLPSAGQLVGQIHEFADRRRII SLLAPLLDC" gene 2079435..2080154 /locus_tag="Deba_1866" /db_xref="GeneID:9494332" CDS 2079435..2080154 /locus_tag="Deba_1866" /note="COGs: COG4786 flagellar basal body rod protein; InterPro IPR001444:IPR010930:IPR020013; KEGG: rmr:Rmar_2233 flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: D0MDW8 flagellar basal-body rod protein FlgG; TIGRFAM: fagellar hook-basal body protein; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins" /codon_start=1 /transl_table=11 /product="fagellar hook-basal body protein" /protein_id="YP_003807825.1" /db_xref="GI:302343296" /db_xref="GeneID:9494332" /translation="MIIDGIAAGISGMNAAVRRLNQSANNLANISTPGYVPSRVEQAD LAGGGVAVVGQTALASGPIVSTGNALDLAIDGAGYFVLQDADGNELYTRAGNFSLNAD GQLVDQTGRLVQAEGFQAPQGTAQIQVGADGVVQALGADDAVLAEGQLQIATFANPGG LRAVGGNAFQATDASGPAVIDAAGQPGYGAIASGALQTSGTDIVSEMVGQITAQRSFE ANLKTIRTGDEMLGTILDIVG" misc_feature 2079444..2080091 /locus_tag="Deba_1866" /note="fagellar hook-basal body proteins; Region: FlgEFG_subfam; TIGR03506" /db_xref="CDD:188331" misc_feature 2079813..2080088 /locus_tag="Deba_1866" /note="flagellar basal-body rod protein FlgF; Region: flgF; TIGR02490" /db_xref="CDD:188226" misc_feature 2080029..2080145 /locus_tag="Deba_1866" /note="Domain of unknown function (DUF1078); Region: DUF1078; pfam06429" /db_xref="CDD:191521" gene 2080212..2080505 /locus_tag="Deba_1867" /db_xref="GeneID:9494333" CDS 2080212..2080505 /locus_tag="Deba_1867" /note="KEGG: rme:Rmet_4135 hypothetical protein; SPTR: Q1LFS4 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807826.1" /db_xref="GI:302343297" /db_xref="GeneID:9494333" /translation="MKHFIMAALLIIALAAAEPSWAGPENRSLNPGGACCAPPRFQIF EAPKPYGGLIMVDTQTGQSWQRIKINTPAGIRVRWLKVPMIEDLPQGQVILWD" gene complement(2080502..2081203) /locus_tag="Deba_1868" /db_xref="GeneID:9494334" CDS complement(2080502..2081203) /locus_tag="Deba_1868" /note="COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005833:IPR005834:IPR006402; KEGG: rci:RCIX511 beta-phosphoglucomutase; PFAM: haloacid dehalogenase; SPTR: Q0W6Q6 beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED" /codon_start=1 /transl_table=11 /product="HAD-superfamily hydrolase, subfamily IA, variant 3" /protein_id="YP_003807827.1" /db_xref="GI:302343298" /db_xref="GeneID:9494334" /translation="MTMSGTDKGLADFAAVLLDMDGVVLDSMVQHAACWREVMAAEGF DASLEFILQNEGCLGFEVLAELADGVGRLAMADAAALRAAMERMLAAQRRMFIERCAA DVRPFPAAVELIEWLGREGVPTALVTSSRLEVVRGALGAELAGQFACIVSADEVARHK PHPEPYLRAAAKLGLGPSSCLVIENAPAGIRSAQAAGATCYAVGSTLAAHHLAMAHRV FADLAQLTRHLRGRD" misc_feature complement(2080529..2081167) /locus_tag="Deba_1868" /note="Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637" /db_xref="CDD:30982" misc_feature complement(2080595..2080903) /locus_tag="Deba_1868" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature complement(2080820..2080822) /locus_tag="Deba_1868" /note="motif II; other site" /db_xref="CDD:119389" gene complement(2081303..2081377) /locus_tag="Deba_R0034" /db_xref="GeneID:9494335" tRNA complement(2081303..2081377) /locus_tag="Deba_R0034" /product="tRNA-Cys" /db_xref="GeneID:9494335" gene complement(2081737..2081811) /locus_tag="Deba_R0035" /db_xref="GeneID:9494336" tRNA complement(2081737..2081811) /locus_tag="Deba_R0035" /product="tRNA-Gly" /db_xref="GeneID:9494336" gene complement(2081837..2082442) /locus_tag="Deba_1869" /db_xref="GeneID:9494337" CDS complement(2081837..2082442) /locus_tag="Deba_1869" /note="COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462:IPR004570; KEGG: geo:Geob_2837 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: B9M264 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol/glycerol-3-phosphate3-phospha tidyltransferase" /protein_id="YP_003807828.1" /db_xref="GI:302343299" /db_xref="GeneID:9494337" /translation="MAPAREDLFNLPNLLSLVRIGSIPFMLILLYRPGRSAAWLAGGL FFVAGLTDLFDGILARKLKKVTLLGQFLDPVSDKLLIASLLVVLTDLGRAAAWMTVVI IGREIAVTGMRALASAQGFVVPSDYLGKLKTTIQMLAVFLLILPSPMGQADLHAWGQV VLWVAVALTAWSGLSYFISFKRSLGLAAVKKMRDSGIDSPE" misc_feature complement(2081891..2082418) /locus_tag="Deba_1869" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene complement(2082454..2083101) /locus_tag="Deba_1870" /db_xref="GeneID:9494338" CDS complement(2082454..2083101) /locus_tag="Deba_1870" /note="COGs: COG0176 Transaldolase; InterPro IPR018225:IPR001585:IPR013785:IPR004731; KEGG: acp:A2cp1_4211 transaldolase; PFAM: Transaldolase; SPTR: Q2IGW6 Probable transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; TIGRFAM: transaldolase, , TalC family" /codon_start=1 /transl_table=11 /product="transaldolase" /protein_id="YP_003807829.1" /db_xref="GI:302343300" /db_xref="GeneID:9494338" /translation="MKIFIDTADIAEIKEAASLGVLDGVTTNPSLVAKTGKPFEKCIR EILDVVPGPVSVECVAIEHKEMIAEAKKYAAWADNVVIKLPIIREGLKAIKALADDGI KVNTTLCFSPMQALLAAKAGAAYISPFVGRLDDISNDGMELIRQILDIYDHYAFDTEV LVASVRNPMHVVQAALMGADVCTIPLKVINQLLAHPLTDIGLKAFLADWEKRAKE" misc_feature complement(2082469..2083098) /locus_tag="Deba_1870" /note="Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea; Region: Transaldolase_FSA; cd00956" /db_xref="CDD:188643" misc_feature complement(order(2082613..2082615,2082715..2082717, 2082853..2082855,2083018..2083023,2083084..2083086)) /locus_tag="Deba_1870" /note="active site" /db_xref="CDD:188643" misc_feature complement(order(2082475..2082480,2082484..2082489, 2082499..2082501,2082508..2082513,2082517..2082519, 2082565..2082567,2082574..2082579,2082595..2082597, 2082601..2082603,2082640..2082645,2082694..2082696, 2082700..2082702,2082709..2082711,2082715..2082717, 2082760..2082762,2082817..2082819,2082826..2082831, 2082835..2082837,2082895..2082897,2082913..2082915, 2082931..2082933,2082985..2082987,2082994..2082996, 2083003..2083005,2083012..2083017,2083042..2083044, 2083051..2083053)) /locus_tag="Deba_1870" /note="intersubunit interactions; other site" /db_xref="CDD:188643" misc_feature complement(2082853..2082855) /locus_tag="Deba_1870" /note="catalytic residue [active]" /db_xref="CDD:188643" gene complement(2083138..2083425) /locus_tag="Deba_1871" /db_xref="GeneID:9494339" CDS complement(2083138..2083425) /locus_tag="Deba_1871" /note="InterPro IPR011017; KEGG: sfu:Sfum_0052 TRASH domain-containing protein; SMART: TRASH domain protein; SPTR: A0LEA3 TRASH domain protein" /codon_start=1 /transl_table=11 /product="TRASH domain protein" /protein_id="YP_003807830.1" /db_xref="GI:302343301" /db_xref="GeneID:9494339" /translation="MGLIRILLIALSVWLLYRLIRHYLGGGQGPRRAKAGHAPREPNA TPAIEELVQDPQCQTYLPKNEAVRARIDGRDVFFCCEKCRDQYLIARGAKK" gene complement(2083416..2083913) /locus_tag="Deba_1872" /db_xref="GeneID:9494340" CDS complement(2083416..2083913) /locus_tag="Deba_1872" /EC_number="2.7.6.3" /note="COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: xac:XAC1784 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR: B7A5Y7 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase" /codon_start=1 /transl_table=11 /product="2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase" /protein_id="YP_003807831.1" /db_xref="GI:302343302" /db_xref="GeneID:9494340" /translation="MGLGANIGDPLAQLVAGVAAMRELPGVTSLMVSPVYRTAPVGRT DQPPFVNAVARLRYHGSARALLAGLLAVEKACGRVRAERWGPRTLDLDLLLFGDEVID QPELRVPHPEMTRRVFVLAPLAQLAPELIIPLTGRTASQLLAALDPRELAAQKAEKVE AAGWG" misc_feature complement(2083536..2083910) /locus_tag="Deba_1872" /note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483" /db_xref="CDD:29601" misc_feature complement(order(2083560..2083562,2083566..2083568, 2083581..2083586,2083593..2083595,2083635..2083640, 2083644..2083646,2083653..2083655,2083662..2083664, 2083674..2083676,2083680..2083682,2083695..2083697, 2083704..2083706,2083716..2083718,2083761..2083763, 2083767..2083769,2083791..2083793,2083797..2083802, 2083902..2083904)) /locus_tag="Deba_1872" /note="catalytic center binding site [active]" /db_xref="CDD:29601" misc_feature complement(order(2083566..2083568,2083581..2083586, 2083593..2083595,2083635..2083640,2083653..2083655, 2083674..2083676,2083680..2083682,2083695..2083697, 2083704..2083706,2083716..2083718)) /locus_tag="Deba_1872" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29601" gene complement(2083945..2085111) /locus_tag="Deba_1873" /db_xref="GeneID:9494341" CDS complement(2083945..2085111) /locus_tag="Deba_1873" /note="COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR004838:IPR004839:IPR015424:IPR015421:IPR 019881; KEGG: sfu:Sfum_0054 aminotransferase, class I and II; PFAM: aminotransferase class I and II; SPTR: A0LEA5 LL-diaminopimelate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: LL-diaminopimelate aminotransferase" /codon_start=1 /transl_table=11 /product="LL-diaminopimelate aminotransferase" /protein_id="YP_003807832.1" /db_xref="GI:302343303" /db_xref="GeneID:9494341" /translation="MNIERAERLQKLPPYLFQELDRLRDQVRARGVDIIDLGVGDPDQ PTPPHIIEALNAAAQDPRTHKYPAYSGLSRFREVAADWYKRRFDVDLIPNQEVITLIG SKEGLAHFPLAFVNPGDVVLTPSPAYPVYKGSTILAGGVPVEMPLRKENGFLPDLAAM DPALLQKAKVMVINYPNNPTAACADLEFYERVAALAKKHEIIVVSDAAYTEMAYDGYR PPSFMQVAGAREVGIEFHSLSKTYNMTGWRIGFAVGNAQLVAGLGQVKSQIDSGAFDA VQLAGITALTASQDCVAQMNKLYAGRREVLVKGLQGLGLEVERPKATFYVWCGVPAGQ TSTDFCRKLLEEAGVVSTPGVGFGSAGEGYVRFALTVDEARLQEAVDRLAGLGL" misc_feature complement(2083948..2085111) /locus_tag="Deba_1873" /note="aspartate aminotransferase; Provisional; Region: PRK07681" /db_xref="CDD:181081" misc_feature complement(2083960..2085009) /locus_tag="Deba_1873" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(2084368..2084370,2084392..2084397, 2084401..2084403,2084485..2084487,2084578..2084580, 2084728..2084730,2084800..2084808)) /locus_tag="Deba_1873" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(2084272..2084274,2084281..2084283, 2084368..2084376,2084506..2084508,2084698..2084700, 2084797..2084799)) /locus_tag="Deba_1873" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(2084392..2084394) /locus_tag="Deba_1873" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(2085119..2085913) /locus_tag="Deba_1874" /db_xref="GeneID:9494342" CDS complement(2085119..2085913) /locus_tag="Deba_1874" /EC_number="5.3.3.10" /note="COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529:IPR011234; KEGG: pmo:Pmob_0980 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; PRIAM: 5-carboxymethyl-2-hydroxymuconate delta-isomerase; SPTR: A9BJV9 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Domain of unknown function (DUF2437); Fumarylacetoacetate (FAA) hydrolase family" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconatedelta- isomerase" /protein_id="YP_003807833.1" /db_xref="GI:302343304" /db_xref="GeneID:9494342" /translation="MTQPKNSEVITAELGLIRFGYQGKVAFGQVKHGIVRVYDGSPFG AGKPGATILPLNDVHLLAPCRPSKIVAVGLNYKAHAAELGLALPDEPMLFIKPATAVI GPNQAIKLPAMSQRVDYECELGVVIGRRCKGLSPKQAREHVIGYTCLNDVTARDLQKK DGQFTRAKGFDTFCPLGPVIAQDIEPGGLRVRTLVNGQQRQDGHTSDLIFSVFNLVSF ISQVMTLNAGDVIATGTPAGIGPLQAGDVATIEVQGVGSLVNPVSN" misc_feature complement(2085725..2085868) /locus_tag="Deba_1874" /note="Domain of unknown function (DUF2437); Region: DUF2437; pfam10370" /db_xref="CDD:150960" misc_feature complement(2085128..2085862) /locus_tag="Deba_1874" /note="4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit; Region: HpaG-C-term; TIGR02303" /db_xref="CDD:131356" misc_feature complement(2085128..2085712) /locus_tag="Deba_1874" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene complement(2085914..2086717) /locus_tag="Deba_1875" /db_xref="GeneID:9494343" CDS complement(2085914..2086717) /locus_tag="Deba_1875" /EC_number="1.3.1.26" /note="COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR000846:IPR016040:IPR011770; KEGG: psa:PST_3325 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Q6VAY4 Dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate reductase" /protein_id="YP_003807834.1" /db_xref="GI:302343305" /db_xref="GeneID:9494343" /translation="MTRITVAGAAGRMGNAIIRAIMHDGGGALVAGLEAPGHRSAGKS LAEVCGVADAPGLVFDDIAQAMAQSDVLIDFTSPTASIANLGWCAEAGKACVIGTTGL DLSHDQILRALAAKTPVVFAPNMSVGMNLMFKLVGQIAQVLGPNYALEVMEAHHDQKK DAPSGTAVRLLKELCAARGWDYDAVCQHGRCGMVGARPQDQIGVAVIRGGDIVGDHTV FFIGQGERIELTHRAHSRDTFAGGAVRAALWLHGKPAGLYDMQDVLGLK" misc_feature complement(2085920..2086717) /locus_tag="Deba_1875" /note="dihydrodipicolinate reductase; Provisional; Region: PRK00048" /db_xref="CDD:178822" misc_feature complement(2086343..2086714) /locus_tag="Deba_1875" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(2085926..2086336) /locus_tag="Deba_1875" /note="Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173" /db_xref="CDD:191215" gene complement(2086731..2087606) /locus_tag="Deba_1876" /db_xref="GeneID:9494344" CDS complement(2086731..2087606) /locus_tag="Deba_1876" /EC_number="4.2.1.52" /note="COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR020624:IPR002220:IPR013785:IPR005263; KEGG: sfu:Sfum_0056 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: A0LEA7 Dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_003807835.1" /db_xref="GI:302343306" /db_xref="GeneID:9494344" /translation="MLKGALVALVTPFRDGKVDEDTLRELVEFHIANGTNGIVPCGTT GESATLSHDEHRMVIRSVVEQVAKRVPVVAGTGSNNTAEAIELTLFAKGVGADAALLI APYYNKPTQEGLYRHFEAIAKATKFPLVPYNIMGRTAVNIEPATMARIAELPEVVAVK EASGNLGQMAEIVNLCGDKMALLSGDDGLLLPVLAIGGVGVVSVVNNIVPRQVVDIIE AWNAGDIALSQQRFHKLLPLCKAMFLETNPIPIKAAMAMVGRIPSDEMRLPMCPIGAA AREKLSAALRAHGLL" misc_feature complement(2086752..2087603) /locus_tag="Deba_1876" /note="Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950" /db_xref="CDD:188637" misc_feature complement(2086749..2087597) /locus_tag="Deba_1876" /note="dihydrodipicolinate synthase; Region: dapA; TIGR00674" /db_xref="CDD:129757" misc_feature complement(order(2086800..2086802,2086806..2086808, 2086863..2086868,2087196..2087198,2087202..2087204, 2087289..2087297,2087364..2087366,2087370..2087372, 2087469..2087483)) /locus_tag="Deba_1876" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188637" misc_feature complement(order(2087046..2087048,2087052..2087054, 2087127..2087129,2087196..2087198,2087211..2087213, 2087475..2087480)) /locus_tag="Deba_1876" /note="active site" /db_xref="CDD:188637" misc_feature complement(2087127..2087129) /locus_tag="Deba_1876" /note="catalytic residue [active]" /db_xref="CDD:188637" gene complement(2087618..2088523) /locus_tag="Deba_1877" /db_xref="GeneID:9494345" CDS complement(2087618..2088523) /locus_tag="Deba_1877" /note="COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510:IPR001653; KEGG: dal:Dalk_0413 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: B8FH34 Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase" /codon_start=1 /transl_table=11 /product="diaminopimelate epimerase" /protein_id="YP_003807836.1" /db_xref="GI:302343307" /db_xref="GeneID:9494345" /translation="MDDIATGMTDPAALAALAGVEFCKMTGTGNDFILIDNRRARLAP ALMPALAKALCCRRRSVGADGLIVLSPSQRVDAALGKIDFRWDFFNADGSSAEMCGNG GRCAARFAVSIGLAGPELIFDTLAGPIRAWVGRQTVTLELTPPTGWYDDLRLEIGGRT MTIHGVNTGVPHAVVPVDDLSSADVKNWGREIRFHRHFAPAGTNVNFIAARHGRLEVR TYERGVEDETLACGTGAVASALMAGRLGWLKSPITVAVRSGEKLTIHFSQDESGVRQV RLEGAADHVYDGVLGAGAFAWLANQ" misc_feature complement(2087654..2088472) /locus_tag="Deba_1877" /note="diaminopimelate epimerase; Provisional; Region: dapF; PRK00450" /db_xref="CDD:179032" misc_feature complement(2088137..2088460) /locus_tag="Deba_1877" /note="Diaminopimelate epimerase; Region: DAP_epimerase; cl14668" /db_xref="CDD:187422" misc_feature complement(2087729..2088028) /locus_tag="Deba_1877" /note="Diaminopimelate epimerase; Region: DAP_epimerase; cl14668" /db_xref="CDD:187422" gene complement(2088511..2089773) /locus_tag="Deba_1878" /db_xref="GeneID:9494346" CDS complement(2088511..2089773) /locus_tag="Deba_1878" /EC_number="4.1.1.20" /note="COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR002986:IPR009006; KEGG: gsu:GSU0158 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Q74GT7 Diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: pyridoxal-dependent decarboxylase, C-terminal sheet domain; pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase" /codon_start=1 /transl_table=11 /product="diaminopimelate decarboxylase" /protein_id="YP_003807837.1" /db_xref="GI:302343308" /db_xref="GeneID:9494346" /translation="MDLFEYRDGVLHAEGVSLTEIAQAVGTPTYVYAQSAMRAEFAAF QEAFAGLDHLICYAMKANSNKAVLGSFAAMGGGADIVSGGELARALAAGVPAERIVYS GVGKLDWELEAALKAGILMFNVESAQELTVLDQIAGRLGLKAPVSLRVNPDVDAKTHP KITTGLAKNKFGLDMGLAFAQYLHAARLPNLVVKGVSCHIGSQLTEVAPFVDALERLA DLVQRLRREGLRLEIIDLGGGIGIRYNQETPPTPREYAARLRPVLEGLGLKLVLEPGR RLVGEAGVLLTRVHYAKTTPAKHFVVVDAAMNDLIRPAFYDSFHAVRPVAQNAGNGQR LVADVVGGICETGDFLVRERDLPVLRRGDLLAIMSAGAYGFAMSSQYNSRPRAAEVLV CGQEWAVVRRRESIEDLSRGEELAPWMI" misc_feature complement(2088535..2089761) /locus_tag="Deba_1878" /note="diaminopimelate decarboxylase; Region: lysA; TIGR01048" /db_xref="CDD:188105" misc_feature complement(2088598..2089701) /locus_tag="Deba_1878" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase; Region: PLPDE_III_DapDC; cd06828" /db_xref="CDD:143501" misc_feature complement(order(2088631..2088633,2088643..2088645, 2088655..2088657,2088742..2088744,2088826..2088828, 2088838..2088840,2088946..2088957,2089057..2089062, 2089168..2089170,2089177..2089179,2089183..2089185, 2089327..2089329,2089468..2089470,2089537..2089539, 2089594..2089596,2089600..2089602)) /locus_tag="Deba_1878" /note="active site" /db_xref="CDD:143501" misc_feature complement(order(2088655..2088657,2088742..2088744, 2088946..2088957,2089057..2089062,2089168..2089170, 2089177..2089179,2089183..2089185,2089327..2089329, 2089468..2089470,2089537..2089539,2089594..2089596, 2089600..2089602)) /locus_tag="Deba_1878" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(2088631..2088633,2088643..2088645, 2088655..2088657,2088739..2088744,2088826..2088828, 2088838..2088840,2088946..2088948,2089168..2089170, 2089177..2089179,2089594..2089596)) /locus_tag="Deba_1878" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(2088742..2088744,2089594..2089596)) /locus_tag="Deba_1878" /note="catalytic residues [active]" /db_xref="CDD:143501" misc_feature complement(order(2088616..2088618,2088625..2088636, 2088640..2088648,2088730..2088732,2088736..2088753, 2088868..2088870,2088874..2088876,2088895..2088897, 2088901..2088903,2089258..2089269,2089390..2089392, 2089399..2089401,2089444..2089446,2089456..2089464, 2089519..2089524,2089528..2089533,2089576..2089581)) /locus_tag="Deba_1878" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143501" gene complement(2089887..2090954) /locus_tag="Deba_1879" /db_xref="GeneID:9494347" CDS complement(2089887..2090954) /locus_tag="Deba_1879" /note="InterPro IPR003961:IPR008957; KEGG: sus:Acid_1064 fibronectin, type III domain-containing protein; PFAM: fibronectin type III domain protein; SPTR: Q02A64 fibronectin, type III domain protein; PFAM: fibronectin type III domain" /codon_start=1 /transl_table=11 /product="fibronectin type III domain protein" /protein_id="YP_003807838.1" /db_xref="GI:302343309" /db_xref="GeneID:9494347" /translation="MARSLTKFGGLSVILATAVLLVGCGIKGNPTPRSEVAPAQVTDL KADSLANGVEVSFSVPQRGKPDLAIETVRLYYGYLPVGGDPDCPPCPPKLRQHHDFDL KDDAGGVSSLMKGGRFAYLDAEAPMNMQAVYGVVLIDAAGRQSPQSAPARVLRVEPSA APTGLWATPGDGRVGIAWQPVATLIGGQPCDDVIGYLIWRKDESGEKLLNSVPIKARR FLDRTARNGANYAYRVQSARGIGGVVAPGEFSDWVDATPKDAKAPEAPGDVSAVSQAE GVFVNFRPSPDRDVQGYLIFRRVDDAEANWVQITELVKDTYYTDSGVEIGARYFYKVL AIDASGNRSEMSVEADVLHKP" misc_feature complement(2089935..2090168) /locus_tag="Deba_1879" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cl00065" /db_xref="CDD:193638" gene complement(2090939..2092348) /locus_tag="Deba_1880" /db_xref="GeneID:9494348" CDS complement(2090939..2092348) /locus_tag="Deba_1880" /EC_number="4.3.2.1" /note="COGs: COG0165 Argininosuccinate lyase; InterProIPR020557:IPR003031:IPR000362:IPR008948:IPR 009049; KEGG: dma:DMR_26520 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: C4XUC1 Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase" /codon_start=1 /transl_table=11 /product="argininosuccinate lyase" /protein_id="YP_003807839.1" /db_xref="GI:302343310" /db_xref="GeneID:9494348" /translation="MAESKQHKLWGGRFAENTHQMMERINASIDFDKRLYRQDIAGSK AHAAMLARQGVISAADEAAIQAGLDQVLAEIEAGQMAWRQSLEDIHTHVESRLAQIIG APAGRLHTGRSRNDQVATDLRLWVLEAGRELDQALAEYQRALVALAEKHVDSIMPGYT HLQRAQPVVLAHHLLAYVEMAWRDRGRLADCLGRAAISPLGAAALAGTTFPLDPRSVA EALGFEGVFANSLDAVSDRDFAAEFIFVLGLVQVHLSRLAEELIIWSTSEFGFVTLSD AFSTGSSIMPQKKNPDAAELIRGKTGRVLGDLVGILTVLKGLPLAYNKDMQEDKEPVF DAHDTVMDCLRVMSPMLADLTVRADRLAQAVGGGFLNATELADYLAERGAPFRLAHEA TGRAVRLAEAGDRGLEDLTLDELRDCCGGLAVDIDQTVYQALKPERAVDRRTSPGGTA RANVERALKEARKRLWPEA" misc_feature complement(2090954..2092336) /locus_tag="Deba_1880" /note="argininosuccinate lyase; Provisional; Region: PRK00855" /db_xref="CDD:179143" misc_feature complement(2090954..2092267) /locus_tag="Deba_1880" /note="Argininosuccinate lyase (argininosuccinase, ASAL); Region: Argininosuccinate_lyase; cd01359" /db_xref="CDD:176463" misc_feature complement(order(2091359..2091364,2091368..2091370, 2091377..2091379,2091383..2091385,2091464..2091466, 2091473..2091475,2091479..2091481,2091503..2091505, 2091509..2091511,2091638..2091640,2091866..2091871, 2091995..2091997,2092004..2092012,2092079..2092081, 2092085..2092087,2092253..2092255,2092265..2092267)) /locus_tag="Deba_1880" /note="active sites [active]" /db_xref="CDD:176463" misc_feature complement(order(2090978..2090980,2091002..2091016, 2091020..2091022,2091170..2091172,2091179..2091181, 2091188..2091193,2091218..2091220,2091233..2091235, 2091314..2091316,2091323..2091325,2091356..2091358, 2091365..2091367,2091374..2091385,2091407..2091415, 2091419..2091421,2091428..2091436,2091440..2091457, 2091461..2091466,2091473..2091475,2091479..2091487, 2091491..2091502,2091518..2091520,2091542..2091544, 2091551..2091556,2091569..2091574,2091581..2091586, 2091590..2091595,2091602..2091604,2091614..2091616, 2091623..2091625,2091635..2091637,2091641..2091646, 2091653..2091667,2091707..2091709,2091716..2091718, 2091722..2091736,2091767..2091769,2091779..2091781, 2091788..2091793,2091800..2091802,2091818..2091823, 2091833..2091835,2091851..2091874,2092019..2092024, 2092031..2092033,2092040..2092042)) /locus_tag="Deba_1880" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176463" gene complement(2092374..2093588) /locus_tag="Deba_1881" /db_xref="GeneID:9494349" CDS complement(2092374..2093588) /locus_tag="Deba_1881" /EC_number="6.3.4.5" /note="COGs: COG0137 Argininosuccinate synthase; InterPro IPR018223:IPR001518:IPR014729; KEGG: dal:Dalk_0409 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: B8FH30 Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase" /codon_start=1 /transl_table=11 /product="argininosuccinate synthase" /protein_id="YP_003807840.1" /db_xref="GI:302343311" /db_xref="GeneID:9494349" /translation="MANDVKSIVLAYSGGLDTSIILKWLQETYDCQVIAFAADLGQGE ELEPVREKAIKTGASKVFIDDLREEFARDYVFPMFRANAIYESVYLLGTSIARPLIAK RQIEIALAENADAVAHGATGKGNDQVRFELAYQALAPQVRIIAPWRIWDLNSRESLIA YAQKHGIPVPVTKAKPYSSDRNLLHISFEGGILEDPWAEPPEDMYVLSVSPKDAPDQA EEITLDFEAGDAVAIDGQKLSPAAMLARLNELGGKHGVGRVDLVENRYVGMKSRGVYE TPGGTILRQARLAMESLTLDREVLRLRDNLAPKYAEMVYYGYWFSPERALLQSLMDQA AAPVCGQVRLKLYKGNVTISGRRSPGSLYRPDFATFEADTVYNQADATGFIRLNGLRL RIRHALDQLAKK" misc_feature complement(2092395..2093576) /locus_tag="Deba_1881" /note="argininosuccinate synthase; Provisional; Region: PLN00200" /db_xref="CDD:177791" misc_feature complement(2092416..2093567) /locus_tag="Deba_1881" /note="Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In...; Region: Argininosuccinate_Synthase; cd01999" /db_xref="CDD:30186" misc_feature complement(order(2093052..2093057,2093199..2093201, 2093232..2093234,2093298..2093300,2093463..2093465, 2093475..2093477,2093481..2093483,2093535..2093537, 2093556..2093558)) /locus_tag="Deba_1881" /note="ANP binding site [chemical binding]; other site" /db_xref="CDD:30186" misc_feature complement(order(2092644..2092646,2092764..2092766, 2092800..2092802,2093022..2093024,2093028..2093030, 2093049..2093057,2093202..2093204,2093214..2093216, 2093307..2093312,2093322..2093324)) /locus_tag="Deba_1881" /note="Substrate Binding Site II [chemical binding]; other site" /db_xref="CDD:30186" misc_feature complement(order(2093211..2093219,2093226..2093231)) /locus_tag="Deba_1881" /note="Substrate Binding Site I [chemical binding]; other site" /db_xref="CDD:30186" gene complement(2093628..2094557) /locus_tag="Deba_1882" /db_xref="GeneID:9494350" CDS complement(2093628..2094557) /locus_tag="Deba_1882" /EC_number="2.1.3.3" /note="COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006130:IPR002292:IPR006132:IPR006131; KEGG: dps:DP0437 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; PRIAM: Ornithine carbamoyltransferase; SPTR: Q6AR58 Ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase" /codon_start=1 /transl_table=11 /product="ornithine carbamoyltransferase" /protein_id="YP_003807841.1" /db_xref="GI:302343312" /db_xref="GeneID:9494350" /translation="MIQLTTKHLLTIRDLTAQEVLGLIERARQLKAGWRGGYRPTPLA GKSVAMIFEKPSTRTRVSFEVGVFQLGGKALFIASRDSQISRSEPLRDTARVLSRYVD GIVVRTFGHEVVEDLARFGDVPVINALTDRYHPCQVLGDLQTVAEYKGEVRDQVYAWI GDGNNMAHSWIEAAAVLGLRLRLACPEGYDPDPEIVAQARARGADILLTREPDEAASG ATVINTDVWASMGQEDEAKGRAEAFGGFTVDGRLMSLAAREAIVLHCLPAHRGEEISD EVMEGPQSAIWDEAENRLHMQKAIMEALLGPRP" misc_feature complement(2093643..2094551) /locus_tag="Deba_1882" /note="ornithine carbamoyltransferase; Provisional; Region: PRK00779" /db_xref="CDD:179122" misc_feature complement(2094117..2094539) /locus_tag="Deba_1882" /note="Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729" /db_xref="CDD:190401" misc_feature complement(2093646..2094086) /locus_tag="Deba_1882" /note="Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185" /db_xref="CDD:189438" gene complement(2094576..2095772) /locus_tag="Deba_1883" /db_xref="GeneID:9494351" CDS complement(2094576..2095772) /locus_tag="Deba_1883" /EC_number="2.6.1.11" /note="COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterProIPR005814:IPR015424:IPR015422:IPR015421:IPR 004636; KEGG: sfu:Sfum_0063 acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: A0LEB4 Acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases" /codon_start=1 /transl_table=11 /product="acetylornithine and succinylornithine aminotransferase" /protein_id="YP_003807842.1" /db_xref="GI:302343313" /db_xref="GeneID:9494351" /translation="MTSQEKIDQYVMQTYGRFPVTFVRGEGCLLWDDQGKSYIDFLAG IAVCGLGHANPEVAEAVCAQAKKLLHVSNLFYTEPQARVAELLVQNSFADRVFFCNSG AEANEGALKLSRLWGKAFKDGAHEVVTIQGSFHGRTIATLSATGQEKIQKGYDPLVSR FKYAPWGDLEAITAAVDEKVCAVMLEPILGEGGVVPPPEGYLPAVRRLCDKTGTMLIF DEIQTGLGRTGKLFAHEHFGVKPDVMTLAKGLGNGLPVGAVCATSEAAALFQPGSHAT TFGAGPLIMEAARVVLETLLRPGFLERVQQAGKKLRKGLEGLCQKYPGHKLEARGLGL MRALILPTPGATVVKKMLQRGFVINCTQDKILRFVPPLIIEDAHIDALIGALDEMLAA GEIAAG" misc_feature complement(2094600..2095772) /locus_tag="Deba_1883" /note="acetylornithine aminotransferase; Provisional; Region: PRK02627" /db_xref="CDD:179453" misc_feature complement(2094609..2095763) /locus_tag="Deba_1883" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature complement(order(2095029..2095031,2095107..2095112, 2095116..2095118,2095215..2095217,2095362..2095364, 2095368..2095373,2095464..2095472)) /locus_tag="Deba_1883" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature complement(order(2095029..2095031,2095107..2095109, 2095116..2095118,2095215..2095217,2095368..2095373, 2095464..2095469)) /locus_tag="Deba_1883" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(2095029..2095031) /locus_tag="Deba_1883" /note="catalytic residue [active]" /db_xref="CDD:99735" gene complement(2095792..2096682) /locus_tag="Deba_1884" /db_xref="GeneID:9494352" CDS complement(2095792..2096682) /locus_tag="Deba_1884" /EC_number="2.7.2.8" /note="COGs: COG0548 Acetylglutamate kinase; InterPro IPR001048:IPR011148:IPR004662; KEGG: tgr:Tgr7_0104 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: B8GTE7 Acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase" /codon_start=1 /transl_table=11 /product="acetylglutamate kinase" /protein_id="YP_003807843.1" /db_xref="GI:302343314" /db_xref="GeneID:9494352" /translation="MTTISPSDRGRTLIEALPYINRFAGQTVVIKYGGHAMKDEALKK SFALNVILLRAVGIYPVVVHGGGPQIGQLLDRLSIDCRFVDGMRVTSPEVMNVVQMVL VGQVNTGIVGLINANGGRAVGLNGHDGGLIQASRMTLQRETGHDQPPEIVDLGLVGKV DKVNPQVLHSLEHGNFIPVIAPVGVGPEGESLNINADLVASAVAAGLRASKLILLTDT PGVMDAGGKLLHELTAKEAKLLQGQGVITGGMIPKVNCCLQALERGVERAHIIDGRVA NALLLEIFSDQGVGTIFSDR" misc_feature complement(2095804..2096649) /locus_tag="Deba_1884" /note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using...; Region: AAK_NAGK-C; cd04250" /db_xref="CDD:58616" misc_feature complement(2096620..2096649) /locus_tag="Deba_1884" /note="feedback inhibition sensing region; other site" /db_xref="CDD:58616" misc_feature complement(order(2095828..2095830,2095840..2095845, 2095852..2095854,2096155..2096157,2096182..2096184, 2096293..2096304,2096308..2096310,2096314..2096322, 2096326..2096328,2096347..2096349,2096359..2096361, 2096368..2096370,2096383..2096388,2096395..2096397, 2096452..2096457,2096515..2096517,2096527..2096529, 2096539..2096541,2096620..2096625,2096632..2096634, 2096638..2096646)) /locus_tag="Deba_1884" /note="homohexameric interface [polypeptide binding]; other site" /db_xref="CDD:58616" misc_feature complement(order(2095924..2095926,2095933..2095938, 2095942..2095944,2095948..2095950,2096017..2096019, 2096029..2096037,2096098..2096100,2096578..2096583, 2096590..2096592)) /locus_tag="Deba_1884" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58616" misc_feature complement(order(2096095..2096100,2096104..2096106, 2096419..2096424,2096485..2096490)) /locus_tag="Deba_1884" /note="N-acetyl-L-glutamate binding site [chemical binding]; other site" /db_xref="CDD:58616" gene complement(2096695..2098068) /locus_tag="Deba_1885" /db_xref="GeneID:9494353" CDS complement(2096695..2098068) /locus_tag="Deba_1885" /note="COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; InterPro IPR003593:IPR013093:IPR004491; KEGG: sfu:Sfum_0065 ATP-dependent protease ATP-binding subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: ATPase AAA; SPTR: A0LEB6 Heat shock protein HslVU, ATPase subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: heat shock protein HslVU, ATPase subunit HslU" /codon_start=1 /transl_table=11 /product="heat shock protein HslVU, ATPase subunit HslU" /protein_id="YP_003807844.1" /db_xref="GI:302343315" /db_xref="GeneID:9494353" /translation="MAQLTPRQIVAELDKYVIGQDQAKRSVAIALRNRWRRRQVPEEL RDEIAPKNILMMGPTGVGKTEIARRLAKMADAPFFKVEASKFTEVGYMGRDVESMIRD LVELAVNMVKNAERERVREKAQELAEERLLDILLPPRQLAHDGKDLDESSHLELVRDS EENPTRAKLRKLLREGKLSERYVDLELDAAKPSGPMVEIFSAGGMEDLEMNLREMLGS VFPKQPKRRKVKVPEALELLANAEAAKLIDMDKVVEEALAKVEQEGMIFLDEIDKIAT REHSGRGPDVSREGVQRDLLPLVEGSTVNTKYGMVKTDHILFIAAGAFHMSKPSDLIP ELQGRFPIRVELEALTPEDFVRILTEPENALTTQYKALMATEGLELEFLPESIEAIAQ IAGRVNQSTENIGARRLHTVMEKLLEEVAFNAPDMAGVRLSVDAAYVRQRLEAISVDT DLSRYIL" misc_feature complement(2096698..2098068) /locus_tag="Deba_1885" /note="ATP-dependent protease ATP-binding subunit HslU; Provisional; Region: hslU; PRK05201" /db_xref="CDD:179962" misc_feature complement(<2097730..2098017) /locus_tag="Deba_1885" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2097877..2097900) /locus_tag="Deba_1885" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(2097874..2097897) /locus_tag="Deba_1885" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2097040..>2097336) /locus_tag="Deba_1885" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene complement(2098071..2098613) /locus_tag="Deba_1886" /db_xref="GeneID:9494354" CDS complement(2098071..2098613) /locus_tag="Deba_1886" /note="COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; InterPro IPR001353; KEGG: aeh:Mlg_0066 ATP-dependent protease peptidase subunit; PFAM: 20S proteasome A and B subunits; SPTR: Q0ACL4 ATP-dependent protease hslV; PFAM: Proteasome subunit" /codon_start=1 /transl_table=11 /product="20S proteasome A and B subunits" /protein_id="YP_003807845.1" /db_xref="GI:302343316" /db_xref="GeneID:9494354" /translation="MTPSAEVRSTTVLALKKDGKVVMAGDGQVTMGQTVVKATARKVR RLHNGRVLAGFAGATADAFTLFERLEGKLEAHSGQLPRAAVELAKDWRTDKMLRRLEA LLIAADREHLLIISGSGDVIDPEEGVAAIGSGGPYALAAARALMAHSPLDPERIVRAA MDVAADICIYTNHQIVVEAL" misc_feature complement(2098074..2098586) /locus_tag="Deba_1886" /note="Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the...; Region: protease_HslV; cd01913" /db_xref="CDD:48442" misc_feature complement(order(2098215..2098217,2098488..2098490, 2098530..2098532,2098536..2098538,2098584..2098586)) /locus_tag="Deba_1886" /note="active site" /db_xref="CDD:48442" misc_feature complement(order(2098107..2098109,2098113..2098118, 2098125..2098127,2098137..2098139,2098170..2098172, 2098194..2098196,2098203..2098208,2098245..2098247, 2098257..2098259,2098338..2098340,2098509..2098517)) /locus_tag="Deba_1886" /note="HslU subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48442" gene complement(2098597..2099574) /locus_tag="Deba_1887" /db_xref="GeneID:9494355" CDS complement(2098597..2099574) /locus_tag="Deba_1887" /note="COGs: COG4974 Site-specific recombinase XerD; InterProIPR004107:IPR002104:IPR011010:IPR010998:IPR 013762; KEGG: gbm:Gbem_0470 tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: B5EBN0 Tyrosine recombinase XerC; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_003807846.1" /db_xref="GI:302343317" /db_xref="GeneID:9494355" /translation="MATGGAKASMDDPWQAFDRYLAEGAGVMPRTRQAYARDARQLAE FIAVKRGGKPWGQVDADDVRAWLAERLRTSARATVGRKLAAARAWFEFLRRAGLVESN PARLAQPPKLEKKLPARLSVDEAFHLVDGPNRPRPGRRDDAKATARRLRDAAVLELLY SSGLRVGELVALDRPDLRLDLGVARVRQGKGGKERVVPVGAKAAQALERYLAARPALL AGEAAALFLNNAGGRLSVRGVQKIVAANQDGLAIGRRIGPHALRHAMATHLLEGGADL RSVQEMLGHASLSTTQKYLHLTMDHLLKVYDQAHPRARSAQEEDDDAKR" misc_feature complement(2098636..2099562) /locus_tag="Deba_1887" /note="site-specific tyrosine recombinase XerC; Reviewed; Region: xerC; PRK00236" /db_xref="CDD:178942" misc_feature complement(2098657..2099532) /locus_tag="Deba_1887" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(order(2098693..2098695,2098798..2098806, 2099005..2099007,2099077..2099082)) /locus_tag="Deba_1887" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature complement(order(2098693..2098695,2098720..2098722, 2098789..2098791,2098798..2098800,2099005..2099007, 2099080..2099082)) /locus_tag="Deba_1887" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature complement(order(2098693..2098695,2098720..2098722, 2098789..2098791,2098798..2098800,2099080..2099082)) /locus_tag="Deba_1887" /note="active site" /db_xref="CDD:29495" gene 2099748..2100428 /locus_tag="Deba_1888" /db_xref="GeneID:9494356" CDS 2099748..2100428 /locus_tag="Deba_1888" /note="COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013217; KEGG: npu:Npun_F0952 methyltransferase type 11; PFAM: methyltransferase type 12; SPTR: B2IUB2 methyltransferase type 11; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_003807847.1" /db_xref="GI:302343318" /db_xref="GeneID:9494356" /translation="MNVMEAFNAHAKEYDRWRRKFIPCFDDFYGAAVTVMQHYCGPAP RILDLGAGTGLLSMFVREAMPQASLTLVDIADQMLGQARARFAGQQDHVRIIHADYLQ DDLPGPFDAICSALSIHHLETPQKRRLFQRCFDLLEPGGVFVNADQIVGPEPDLAQWY DAHWERSIRAAGVDDQTMAQTRQRMLHDRLDTLEDQLTMLRAAGFTRVDCQYKWFALV VFSGRRPL" misc_feature 2099754..>2099984 /locus_tag="Deba_1888" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" misc_feature 2099880..2100179 /locus_tag="Deba_1888" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2099892..2099912,2099964..2099969,2100039..2100047, 2100090..2100092) /locus_tag="Deba_1888" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 2100573..2102663 /locus_tag="Deba_1889" /db_xref="GeneID:9494357" CDS 2100573..2102663 /locus_tag="Deba_1889" /note="COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 020568:IPR009000:IPR009022:IPR014721:IPR004540:IPR005225; KEGG: sfu:Sfum_0068 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein; SPTR: A0LEB9 Translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain" /codon_start=1 /transl_table=11 /product="translation elongation factor G" /protein_id="YP_003807848.1" /db_xref="GI:302343319" /db_xref="GeneID:9494357" /translation="MSDKVNQTRTIALVGHGGAGKTSLAEAMLFNAKAVDRLGKVDEG NTVLDFEPEEIKRGGSVSASFGHYSHKKHDVHLVDCPGDDNFLFDAASALRAVDGAIM VIDAIDGIKVQGEKVWQFVQAAQTPALVVVNKMDRERANFDAAVNMIPDMLGVKGVRL QLPIGAADGFGGVVDLLSNKAYTFAKDGSGKMEIGEIPADMADEVEALRESLIEDIAE ADDSLMERYLEGESVSDDELAAALKKGVIERLFVPVTACAALRNIGVQSVMDLVNRLL PSPVEAGAVSGVDVKTGEEIQRQPSADEPFCGLVFKTVADPFAGRLSMVRVFSGKLTS ELPLLNPNKDAKERFGQLYLQTGKTQKAIAEALPGDIVAIPKLKETATGDTLCEDKSP IKLQPVPPMPAVISYAIEAKEKGDEEKLFAGINKLLEEDPTLRLDRDPATGEALLGGM GSVHIETTLERLRRKFNVEVNLKTPKVPYRETIKGKTKVQGRYKKQTGGRGQFGDTWI EIEPAGEGEGYVFVDAIVGGSIPRQYIPAVEKGIGEALLQGVLAGYPMVDVKVTLYDG SFHPVDSSEMAFKVAGSMGFKKGAPQCKPTMLEPIMKLTVTVPDDAMGDVMGDISSRR GRVLGMESKGSLQIISALVPMAEVLGYQPELTSLTGGRGAFSMEMDHYEEVPGDVQKK IIEAYQATKKEAEN" misc_feature 2100600..2101409 /locus_tag="Deba_1889" /note="Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved...; Region: EF-G_bact; cd04170" /db_xref="CDD:133370" misc_feature 2100612..2102627 /locus_tag="Deba_1889" /note="elongation factor G; Reviewed; Region: PRK12740" /db_xref="CDD:183713" misc_feature 2100615..2100638 /locus_tag="Deba_1889" /note="G1 box; other site" /db_xref="CDD:133370" misc_feature order(2100618..2100620,2100624..2100626,2100636..2100641, 2100648..2100650,2100657..2100662,2100762..2100767, 2100819..2100824,2100891..2100896,2101002..2101004, 2101014..2101016) /locus_tag="Deba_1889" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133370" misc_feature order(2100621..2100641,2100747..2100752,2100816..2100818, 2100972..2100974,2100978..2100983,2101344..2101346, 2101350..2101352) /locus_tag="Deba_1889" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133370" misc_feature order(2100744..2100758,2100762..2100764) /locus_tag="Deba_1889" /note="Switch I region; other site" /db_xref="CDD:133370" misc_feature 2100747..2100749 /locus_tag="Deba_1889" /note="G2 box; other site" /db_xref="CDD:133370" misc_feature 2100807..2100818 /locus_tag="Deba_1889" /note="G3 box; other site" /db_xref="CDD:133370" misc_feature 2100813..2100869 /locus_tag="Deba_1889" /note="Switch II region; other site" /db_xref="CDD:133370" misc_feature 2100969..2100980 /locus_tag="Deba_1889" /note="G4 box; other site" /db_xref="CDD:133370" misc_feature 2101344..2101352 /locus_tag="Deba_1889" /note="G5 box; other site" /db_xref="CDD:133370" misc_feature 2101488..2101736 /locus_tag="Deba_1889" /note="EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide...; Region: EFG_mtEFG_II; cd04088" /db_xref="CDD:58095" misc_feature 2102007..2102354 /locus_tag="Deba_1889" /note="EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor...; Region: EFG_mtEFG1_IV; cd01434" /db_xref="CDD:58274" misc_feature 2102367..2102600 /locus_tag="Deba_1889" /note="EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor...; Region: EFG_mtEFG_C; cd03713" /db_xref="CDD:58065" gene 2102659..2103150 /locus_tag="Deba_1890" /db_xref="GeneID:9494358" CDS 2102659..2103150 /locus_tag="Deba_1890" /note="COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR008284:IPR001453:IPR020817; KEGG: sfu:Sfum_0070 molybdenum cofactor synthesis domain-containing protein; PFAM: molybdopterin binding domain; SPTR: A0LEC1 Molybdopterin adenylyltransferase; TIGRFAM: molybdenum cofactor synthesis domain protein; manually curated; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain" /codon_start=1 /transl_table=11 /product="molybdenum cofactor synthesis domain protein" /protein_id="YP_003807849.1" /db_xref="GI:302343320" /db_xref="GeneID:9494358" /translation="MNHKAAILTVSDGAAEGRREDVSGPRLVQMLEEAGVQVIETAVV PDEMDKISAQLRLYADYLKVSLVLTTGGTGLSRRDVTPEATRRVLERTVPGLAEAMRA EGLKITPHAVLSRGVCGIRGATLIINLPGGPNAAVEGLKIILPALPHGLNKLRGDTSD CAR" misc_feature 2102668..2103120 /locus_tag="Deba_1890" /note="MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea...; Region: MogA_MoaB; cd00886" /db_xref="CDD:58167" misc_feature order(2102872..2102880,2102968..2102970,2103046..2103051, 2103061..2103063,2103070..2103072) /locus_tag="Deba_1890" /note="MPT binding site; other site" /db_xref="CDD:58167" misc_feature order(2102878..2102880,2102884..2102889,2102893..2102895, 2102905..2102907,2102929..2102937,2102950..2102952, 2102959..2102964,2102992..2102994,2103001..2103003, 2103118..2103120) /locus_tag="Deba_1890" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:58167" gene 2103208..2103651 /locus_tag="Deba_1891" /db_xref="GeneID:9494359" CDS 2103208..2103651 /locus_tag="Deba_1891" /note="COGs: COG1661 DNA-binding protein with PD1-like DNA-binding motif; KEGG: dma:DMR_35880 hypothetical protein; SPTR: C4XLE0 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF296)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807850.1" /db_xref="GI:302343321" /db_xref="GeneID:9494359" /translation="MKAAQGGLGRVFVLRLEDGDRLPDCLERFVAEQGVERAFCAMLG GVGSGRLIVGPEDGQARPAQPMNLPISGVQEALAVGTVFPDQNGRPKLHMHGAMGRAG QTITGCMRAGVDTWQIGEVVIMELTGLTANRKIDPATGFELLSLD" misc_feature 2103208..2103639 /locus_tag="Deba_1891" /note="Domain of unknown function (DUF296); Region: DUF296; cl00720" /db_xref="CDD:193917" gene complement(2103739..2104572) /locus_tag="Deba_1892" /db_xref="GeneID:9494360" CDS complement(2103739..2104572) /locus_tag="Deba_1892" /note="COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136:IPR013785; KEGG: mta:Moth_0946 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase NPD; SPTR: Q2RJX7 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase NPD" /protein_id="YP_003807851.1" /db_xref="GI:302343322" /db_xref="GeneID:9494360" /translation="MFERNPLCRLLGVAYPVILGAMSRINNPELVAAVSQAGGFGLLV AKNYPQPADLLRAIQRVRELTDRPFGVNLAARDASSPTLAGLLASQGIKAVTTSAGPP DEIVPACHEAGLRVLHVVGGVRGALRAQNTGVDAVIAEGGESGGLQGPGAISTMVLVP AVCDAVDVPVVAAGGVADNRGFRAALALGACGVQVGTRFIASSQCVAEPAWKEALLAA TEQDTELVGKDRVFMRALGQHLPGARGQAWPAGQCAGLIGDLPDAAQLVARIVGAPAA T" misc_feature complement(2103757..2104563) /locus_tag="Deba_1892" /note="Nitronate monooxygenase; Region: NMO; pfam03060" /db_xref="CDD:145943" misc_feature complement(2103808..2104530) /locus_tag="Deba_1892" /note="2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin...; Region: NPD_like; cd04730" /db_xref="CDD:73392" misc_feature complement(order(2103982..2103993,2104048..2104056, 2104138..2104143,2104153..2104155,2104216..2104218, 2104279..2104281,2104507..2104512)) /locus_tag="Deba_1892" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(order(2103826..2103828,2104132..2104137)) /locus_tag="Deba_1892" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(2104132..2104134) /locus_tag="Deba_1892" /note="putative catalytic residue [active]" /db_xref="CDD:73392" gene complement(2104589..2105620) /locus_tag="Deba_1893" /db_xref="GeneID:9494361" CDS complement(2104589..2105620) /locus_tag="Deba_1893" /note="COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR013785:IPR006268; KEGG: tte:TTE1013 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; SPTR: Q8R5T1 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase" /codon_start=1 /transl_table=11 /product="phospho-2-dehydro-3-deoxyheptonate aldolase" /protein_id="YP_003807852.1" /db_xref="GI:302343323" /db_xref="GeneID:9494361" /translation="MIIQMEAKAGEKQLERLVERLGNDGFPPEMLDISRGDTFILVGL KGDTRAIDEGAYRALDYVLDVIRISDPCKELTRDFHPRPSIIRLGSGLRIGKDLAVIA GPCAIESRDQLMKTAKLVVDAGANILRGGAFKPRTIHRSFQGLREDGLKLLAEAREKF GIPVITEIMDARDIHLFVEYDIDIWQVGARNCLNYTLLDALAEMKNPKPVVLKRGDHV SISEFLGAALRLYDGNTKVILCERGDKTVDPVYRNVLNLNNVAWLKKRYHLPVLVDPS HGTGVRQIVPDMALAGIAAGADGLMVEVHHKPEEALCDGAQSLSADFKKLTPLVRQVF ELRRQAKML" misc_feature complement(2104613..2105617) /locus_tag="Deba_1893" /note="3-deoxy-7-phosphoheptulonate synthase; Reviewed; Region: PRK08673" /db_xref="CDD:181535" misc_feature complement(2104613..2105392) /locus_tag="Deba_1893" /note="NeuB family; Region: NeuB; cl00496" /db_xref="CDD:186036" gene complement(2105617..2106123) /locus_tag="Deba_1894" /db_xref="GeneID:9494362" CDS complement(2105617..2106123) /locus_tag="Deba_1894" /note="COGs: COG1656 conserved hypothetical protein; InterPro IPR002782; KEGG: sfu:Sfum_0072 hypothetical protein; PFAM: protein of unknown function DUF82; SPTR: A0LEC3 Putative uncharacterized protein; PFAM: Protein of unknown function DUF82" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807853.1" /db_xref="GI:302343324" /db_xref="GeneID:9494362" /translation="MAEVERILVDAMLGRLARWLRLLGLDATLLQRPPSQPPPDQLLL TRRVKLRGRRGVVFIEHDRLVDQLRQTVGLPGLNIRPEAFFTRCLECNQPVRAIGRDQ AAAVVADHVLMTAERFTQCPRCGKVFWPGSHGQRALEFLRQAGAWPIHPNGRRGDANR SEIAEQGS" misc_feature complement(2105692..>2105952) /locus_tag="Deba_1894" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1656; cl09136" /db_xref="CDD:143721" gene complement(2106111..2106884) /locus_tag="Deba_1895" /db_xref="GeneID:9494363" CDS complement(2106111..2106884) /locus_tag="Deba_1895" /note="KEGG: ade:Adeh_4035 hypothetical protein; SPTR: Q2IGT8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807854.1" /db_xref="GI:302343325" /db_xref="GeneID:9494363" /translation="MATLIAMVWLMSGCATTIDGPTMGELPSPQQAVARLQERQANVR SFVMQGSLSARTAEGRDLSGDHVIYGVYPDRLRADVLGPFGQPVLRMIADGNKLSVLS FDENRLYLGRATRQNVAAFLGVNLSPDEVFTILGGGVPFLRSDNLQETAPAQPGAAML TITDGPARIVETVEFDLADYSIRQGRLRQHEGPYNFLCRFDKFTTGGPWRYPRTVEIE SADGRALALENDELLINEPVDGKVFEAPTPKGIEVRWLK" gene complement(2106916..2108667) /locus_tag="Deba_1896" /db_xref="GeneID:9494364" CDS complement(2106916..2108667) /locus_tag="Deba_1896" /note="COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR019734:IPR013105:IPR001440:IPR011717:IPR 013026:IPR011990; KEGG: sfu:Sfum_0074 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; SPTR: A0LEC5 hypothetical protein; PFAM: Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807855.1" /db_xref="GI:302343326" /db_xref="GeneID:9494364" /translation="MRSMAFFKRAAALWGLALMLLTAGCATVTPQAPPAKVDAPVSSL TDSLALYGAAQMALENGDTNKALELLRQGIKIDPKSAFLHIEVSRILLGVGRTDEAEK EARQAIELNPELVDGWLLLGGIYSSRQDLNNAVKAFERATTLDPDQEEARLYLGTLYM DQGRMEQAVQVLRDLVKLRPRLALARYYLGQALASLRRYRQAEVQLKAALLIAPNFEA VLFELGAVYEMQHKYRDAEATYLRVLDLNPDSTAGHDRLGRFYLSTGRYQEALREFAV VKGLSRDDSEVRLKIGLVYYEQGKYNQAAEEFRAIAKDEPDNHRARYYLGVSLQDGGK GDQALTAFERIPPDSDMYVDARLHMADILVKNGRTNEALRSLSMARKHAPEDADILVA MAAVNDVQGNVTAAENLLREAMSLEPKNAEIHFRLGVVLDKDGRRDEAMELMSEAVEL DERHARALNYLGYVMTEEGGDLDEAENLIRRALAVEPQSGYILDSLGWVFYQKSQYEE AYTYLSRAVQSGEADPEIYEHLGDACKKLGKLREAEKAYAKALELRDGNSDQLRAKLT QVRRQLEKGDHGAKANP" misc_feature complement(2107978..2108598) /locus_tag="Deba_1896" /note="type IV pilus biogenesis/stability protein PilW; Region: type_IV_pilW; TIGR02521" /db_xref="CDD:131573" misc_feature complement(2108227..2108523) /locus_tag="Deba_1896" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2108284..2108289,2108296..2108301, 2108308..2108313,2108389..2108394,2108401..2108406, 2108410..2108415,2108500..2108505,2108512..2108517, 2108521..2108523)) /locus_tag="Deba_1896" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(2108245..2108247,2108254..2108256, 2108266..2108268,2108302..2108304,2108347..2108349, 2108356..2108358,2108368..2108370,2108404..2108406, 2108449..2108451,2108458..2108460,2108470..2108472, 2108506..2108508)) /locus_tag="Deba_1896" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(2107921..2108316) /locus_tag="Deba_1896" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2107978..2107983,2107990..2107995, 2108002..2108007,2108185..2108190,2108197..2108202, 2108206..2108211,2108296..2108301,2108308..2108313)) /locus_tag="Deba_1896" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(2107939..2107941,2107948..2107950, 2107960..2107962,2107996..2107998,2108041..2108043, 2108152..2108154,2108164..2108166,2108200..2108202, 2108245..2108247,2108254..2108256,2108266..2108268, 2108302..2108304)) /locus_tag="Deba_1896" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(2107717..2108013) /locus_tag="Deba_1896" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2107774..2107779,2107786..2107791, 2107798..2107803,2107879..2107884,2107891..2107896, 2107900..2107905,2107990..2107995,2108002..2108007, 2108011..2108013)) /locus_tag="Deba_1896" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(2107735..2107737,2107744..2107746, 2107756..2107758,2107792..2107794,2107837..2107839, 2107846..2107848,2107858..2107860,2107894..2107896, 2107939..2107941,2107948..2107950,2107960..2107962, 2107996..2107998)) /locus_tag="Deba_1896" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(2107756..2107983) /locus_tag="Deba_1896" /note="Anaphase-promoting complex, cyclosome, subunit 3; Region: Apc3; pfam12895" /db_xref="CDD:193368" misc_feature complement(2107513..2107803) /locus_tag="Deba_1896" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2107570..2107575,2107582..2107587, 2107594..2107599,2107675..2107680,2107687..2107692, 2107696..2107701,2107786..2107791,2107798..2107803)) /locus_tag="Deba_1896" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(2107531..2107533,2107540..2107542, 2107552..2107554,2107588..2107590,2107633..2107635, 2107642..2107644,2107654..2107656,2107690..2107692, 2107735..2107737,2107744..2107746,2107756..2107758, 2107792..2107794)) /locus_tag="Deba_1896" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(2107204..2107470) /locus_tag="Deba_1896" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2107222..2107224,2107231..2107233, 2107243..2107245,2107282..2107284,2107327..2107329, 2107336..2107338,2107348..2107350,2107384..2107386, 2107429..2107431,2107438..2107440,2107450..2107452)) /locus_tag="Deba_1896" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(order(2107261..2107266,2107273..2107278, 2107288..2107293,2107369..2107374,2107381..2107386, 2107390..2107395)) /locus_tag="Deba_1896" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(2107054..2107299) /locus_tag="Deba_1896" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2107057..2107062,2107069..2107074, 2107081..2107086,2107162..2107167,2107174..2107179, 2107183..2107188,2107276..2107281,2107288..2107293, 2107297..2107299)) /locus_tag="Deba_1896" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(2107075..2107077,2107120..2107122, 2107129..2107131,2107141..2107143,2107177..2107179, 2107222..2107224,2107231..2107233,2107243..2107245, 2107282..2107284)) /locus_tag="Deba_1896" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(2108691..2109731) /locus_tag="Deba_1897" /db_xref="GeneID:9494365" CDS complement(2108691..2109731) /locus_tag="Deba_1897" /note="COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR000943:IPR007627:IPR007630:IPR013325:IPR 013324:IPR011991:IPR014284; KEGG: sfu:Sfum_2115 sigma-70 region 2 domain-containing protein; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; SPTR: A0LK46 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; alternative sigma factor RpoH" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma 32 subunit, RpoH" /protein_id="YP_003807856.1" /db_xref="GI:302343327" /db_xref="GeneID:9494365" /translation="MNRDLPPDEIILADESADDRELEILDPELAVDDDDDGSLDGERT ALPDESEGGLVPASATTSALQRYLWEARQYPLLSREEEDALARRFVEEQDPEAAAMLV TSNLRLVVKIAMEHQRYWMRNLLDLIQEGNMGLLQAVQKFDPFRGIKFSYYASFWIKA YILKFIMDNWRLVRVGTTQAQRKLFYKLRREKEKLQAQGVTPGPRLLGQRLGVSEKDV VDMEQRLDSWELSLDAPVRDDSDDTHKNLLPSPRPTAEQDLADSELRQLFHRKLMEFR QTLDDKEQDILDNRLLAENPQTLSEVGDRHGVSRERIRQLQVRLMEKLGEFMQEQIPD FKGQFADLIAGD" misc_feature complement(2108742..2109569) /locus_tag="Deba_1897" /note="RNA polymerase factor sigma-32; Reviewed; Region: PRK06596" /db_xref="CDD:180635" misc_feature complement(2109219..2109431) /locus_tag="Deba_1897" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature complement(2108760..2108903) /locus_tag="Deba_1897" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cl01055" /db_xref="CDD:197420" gene 2109903..2110781 /locus_tag="Deba_1898" /db_xref="GeneID:9494366" CDS 2109903..2110781 /locus_tag="Deba_1898" /note="COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: sgr:SGR_2353 hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: C9ZBT5 Putative hydrolase; PFAM: alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_003807857.1" /db_xref="GI:302343328" /db_xref="GeneID:9494366" /translation="MITPPASARALPAGFKRDSVFAMGLELNMVHSQKGRPPLLFLHG LGGSCEDWYDVMPLLADRRDCLAVDWPGFGWSPKPDLPYGVYYFCRVLDEILPQLGMD RAQLVGHSMGGQVVLHFAATRPAKVERLAAVCPAGGHAAVKPWQRLALALLAKADDTM RLAVNESLARRLAVLPFADRRAPATLQAAQRIAAQWLDQRSRRERALARSARSILATP LWRDLGAVEAPTLLITARHDALTPMADTDRLAAALGDARREVIGRDHMLPYSQPRELA AALGRFFADAATDCDV" misc_feature 2110017..2110724 /locus_tag="Deba_1898" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" misc_feature <2110131..>2110313 /locus_tag="Deba_1898" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 2110896..2112257 /locus_tag="Deba_1899" /db_xref="GeneID:9494367" CDS 2110896..2112257 /locus_tag="Deba_1899" /note="COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006668:IPR000644:IPR006667:IPR006669; KEGG: pca:Pcar_0596 magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; SPTR: Q3A6Z6 Magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular N domain; Divalent cation transporter; CBS domain; TIGRFAM: Mg2+ transporter (mgtE)" /codon_start=1 /transl_table=11 /product="magnesium transporter" /protein_id="YP_003807858.1" /db_xref="GI:302343329" /db_xref="GeneID:9494367" /translation="MTYEKKQMISDLKPLLEQSSLEAVGALVADLHPADIADIIESLT ENEKRLLFQALDARTASEVVVELSDFSRDQVLEGIHTQRLADIVDDMPSDEATDFIAE LPAGQAAEVLRRIDLEDTEDVRTLLQYDEDSAGGIMQLELLSARVDQTVQDAIDAIRQ AKDEAEDIYNVFVVDAQNRLMGTLPIFKLLLEKPDVVIESIFEPCPLIIKANEDQETV AHKFRHYDLVSAPVVDDDGHLLGRITIDDVMEVLEEETREDLLRMAGASSEEDMFYSN QIFRISRLRLPWLLTNMFGGLVTGYILWLFKLTVPEAVTLMSFVPVIMSMGGNVGIQS STIMVRGFAVGAVNPSNILKMLFKEIRVAAVIGCTCGLAVGLLAQLWHGSYKLGVVVG FSMLGAIMSAALTGTIFPALFKRIGVDPAISSGPFVTTANDIIGVLIYFGIAAIFYRL LLW" misc_feature 2110896..2112251 /locus_tag="Deba_1899" /note="Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]; Region: MgtE; COG2239" /db_xref="CDD:32420" misc_feature 2110986..2111291 /locus_tag="Deba_1899" /note="MgtE intracellular N domain; Region: MgtE_N; cl15244" /db_xref="CDD:197452" misc_feature 2111325..2111651 /locus_tag="Deba_1899" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other...; Region: CBS_pair_Mg_transporter; cd04606" /db_xref="CDD:73106" misc_feature 2111850..2112227 /locus_tag="Deba_1899" /note="Divalent cation transporter; Region: MgtE; cl00786" /db_xref="CDD:120115" gene 2112264..2113025 /locus_tag="Deba_1900" /db_xref="GeneID:9494368" CDS 2112264..2113025 /locus_tag="Deba_1900" /note="COGs: COG1381 Recombinational DNA repair protein (RecF pathway); InterPro IPR003717; KEGG: ade:Adeh_1303 DNA replication and repair protein RecO; PFAM: Recombination protein O RecO; SPTR: C8QXV6 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO" /codon_start=1 /transl_table=11 /product="DNA repair protein RecO" /protein_id="YP_003807859.1" /db_xref="GI:302343330" /db_xref="GeneID:9494368" /translation="MAEPARDHALVLRLRELGESDLLVDFFGRRIGRGTAIAKGARRS RKRFFGLLLVGHLLELELWPSKSGDLWRLEAAWLLENHQALRADWRRWLFGAPVLELL LRATASHDPHPAALDLALRALSACGQASDKKLLASRLLVFCLLLASELGYGLSLEHCV RCGRPVADEPGLALSPEGGLVCGQCPAGPRARPLAPGLRQGLRTALALPADKKDRLAF PLPLAREGLAFMHQYWAETIGADLGALTVAVDCLA" misc_feature 2112264..>2112407 /locus_tag="Deba_1900" /note="Recombination protein O N terminal; Region: RecO_N; pfam11967" /db_xref="CDD:152402" misc_feature 2112279..2112989 /locus_tag="Deba_1900" /note="DNA repair protein RecO; Region: reco; TIGR00613" /db_xref="CDD:161959" misc_feature 2112519..2112998 /locus_tag="Deba_1900" /note="Recombination protein O C terminal; Region: RecO_C; pfam02565" /db_xref="CDD:145610" gene 2113363..2114358 /locus_tag="Deba_1901" /db_xref="GeneID:9494369" CDS 2113363..2114358 /locus_tag="Deba_1901" /note="COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: adg:Adeg_0480 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: C9RBK4 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component" /codon_start=1 /transl_table=11 /product="2-hydroxyglutaryl-CoA dehydratase D-component" /protein_id="YP_003807860.1" /db_xref="GI:302343331" /db_xref="GeneID:9494369" /translation="MTTPPPLLGMTTSIPVEVVLAAGMIPTDLNNRFINHPQPHELTR QAEELGLPRTLCAWIKGMYAWCLRHPEMETVVAVTQGDCSNTHALAELLSHHGRRVLF FEYPHDRDRTALINQVQRLANDLGADLALAEDWRRRLLPLRGQLAILDELTWRTGQVS GAENQLWLVGSSDFDGDPDDYARRLGDFLERAVQRPQAHGGPRIGVLGVPPIFDDLAQ SVEAAGGAVVFNEIPRQFAMPPDPAPRSLIEQYLAYTYPYDVWGRIADIQRQARLRRL DGLIHYTQAFCYRQMQDVLIKKMIELPVLTLEGDAVGPVDGRTRVRIEAFVEMLS" misc_feature 2113402..2114352 /locus_tag="Deba_1901" /note="2-hydroxyglutaryl-CoA dehydratase, D-component; Region: HGD-D; pfam06050" /db_xref="CDD:191439" misc_feature <2114002..2114355 /locus_tag="Deba_1901" /note="N subunit; Region: benz_CoA_bzdN; cl11464" /db_xref="CDD:143741" gene 2114456..2115517 /locus_tag="Deba_1902" /db_xref="GeneID:9494370" CDS 2114456..2115517 /locus_tag="Deba_1902" /note="COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744:IPR019591; KEGG: mes:Meso_4025 hypothetical protein; PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; SPTR: B6R846 Mrp protein; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; ATPase MipZ" /codon_start=1 /transl_table=11 /product="ATPase-like, ParA/MinD" /protein_id="YP_003807861.1" /db_xref="GI:302343332" /db_xref="GeneID:9494370" /translation="MSEKERILDPDLLEALKQVKYPGFDADIVAMGLVLEARVEDGKA VVLMRPVAAPAKVREDLEDAIAAQIGSLPGVRELELNMPEPPQPKAQQKQGPRPIPGV KAIVPVASGKGGVGKSTVSVNLALALAEMGLKVGLLDLDLYGPSIPIMLGLQGAQPSQ GRDNKIAPVEARGLKVLSIGFLIGADRALIWRGPLVMKAVRQLLHEADWGELDALILD LPPGTGDVQITMTQETPITGAVVVTTPQDVALADAIRAVDMFKQVNAKVLGIVENMSY FICPDCGGRHEIFGHGSVEPLSQKLGVPFLGELPLDPDVPKLADHGQAAVQAAGSAEA YRQIAVKVARMLGLIGQDK" misc_feature 2114456..>2114701 /locus_tag="Deba_1902" /note="Domain of unknown function DUF59; Region: DUF59; cl00941" /db_xref="CDD:176589" misc_feature 2114822..2115415 /locus_tag="Deba_1902" /note="CobQ/CobB/MinD/ParA nucleotide binding domain; Region: CbiA; pfam01656" /db_xref="CDD:145019" misc_feature 2114822..2115394 /locus_tag="Deba_1902" /note="MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037" /db_xref="CDD:73300" gene 2115533..2115769 /locus_tag="Deba_1903" /db_xref="GeneID:9494371" CDS 2115533..2115769 /locus_tag="Deba_1903" /note="COGs: COG0694 thioredoxin-like protein and domains; InterPro IPR001075; KEGG: tpd:Teth39_0754 NifU domain-containing protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: B0K8A0 Nitrogen-fixing NifU domain protein; PFAM: NifU-like domain" /codon_start=1 /transl_table=11 /product="nitrogen-fixing NifU domain protein" /protein_id="YP_003807862.1" /db_xref="GI:302343333" /db_xref="GeneID:9494371" /translation="MDALTKDMVEQALQEARAELAKHHGNVEVLAVNQEGVVLVRLTG ACSGCKSAPLTLRDVIEKSLKARLPQVTRVDALL" misc_feature <2115596..2115754 /locus_tag="Deba_1903" /note="NifU-like domain; Region: NifU; cl00484" /db_xref="CDD:153799" gene 2116042..2117910 /locus_tag="Deba_1904" /db_xref="GeneID:9494372" CDS 2116042..2117910 /locus_tag="Deba_1904" /note="COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: dal:Dalk_2448 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FB55 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_003807863.1" /db_xref="GI:302343334" /db_xref="GeneID:9494372" /translation="MAKYQHKDMAGVIAQEQIPLHQVLPATNTYDLIKHGASINPEAI ALSFIPSGEQYMNPFDRTYANLLGEINRTANMLRDLGLGSKDVVSYLLPNVPQTHFLL WGGQAAGIVNPINFLLEAHTIRDICQAAGTKILVALGEYPGLDIWQKVMSIRKDLPGV KAIVRGLGPSDEKNGVYGYDDFVSRYDADKLTFTRQIAPDDVATIFHTGGTTGTPKLA PRTHLNEAANALQSSLISPLSSGETILSGLPLFHTNGTTVTGSSAFMIGGRVVILSPY GYRDPSVIKNFYKIVEKFRAVTFSAVPTVLAMLLATPKGDEDISSLRFAVCGAAPLSV ELFQRFEEKTGMKIMEGYGLTEGLCVSSCNPYYGQRKIGSIGLRVPYQDMRVFKVDDQ GKFVSEAKVDEIGSVCISGPNVFKGYTEDRHNTTLFPKEGWVNTGDLGRQDADGYIFL TGRKKELIIRGGHNIDPAVIEEPLYSLPGVALAAAVGRPDPHAGEVPVAYVQLEPGAD LDEARIMDHLAKNVGERAALPKEVVILGQLPLTPVGKMFKPAMRWDATRRTYERELAA LGDEVQSLAVAVGEDKIHGTLATITVSLGQADRQEIAAKIAELLSLYTVKHEVVFV" misc_feature 2116069..2117901 /locus_tag="Deba_1904" /note="AMP-binding domain protein; Validated; Region: PRK07529" /db_xref="CDD:181017" misc_feature <2116660..2117697 /locus_tag="Deba_1904" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(2117989..2119161) /locus_tag="Deba_1905" /db_xref="GeneID:9494373" CDS complement(2117989..2119161) /locus_tag="Deba_1905" /note="COGs: COG3825 conserved hypothetical protein; InterPro IPR008912; KEGG: gme:Gmet_0107 hypothetical protein; PFAM: VWA containing CoxE family protein; SPTR: Q39ZG8 Putative uncharacterized protein; PFAM: VWA domain containing CoxE-like protein" /codon_start=1 /transl_table=11 /product="VWA containing CoxE family protein" /protein_id="YP_003807864.1" /db_xref="GI:302343335" /db_xref="GeneID:9494373" /translation="MFLNLFYTLRHAGVPVSVTEWMTLMMALDQGHADNSLSSFYYLA RAILVKSEAFYDQFDQSFAHVFKDAEMPKNIRDEILDWLSDPANKLELPREELERMKA LSLEELRREFEKRLEEQTEAHHGGNRWIGTGGTSPFGHSGANPAGMRIGGPGGGGTAV KIAAMRKFRNYRDDLTLDVRQMKVAMKRLRQLEREGPEDELDIDGTIDKTCRDGGEID LVFRRPRQNTVKVLLLMDSGGSMNPYARLVSQLFSAAHQMSHFRDFKHYYFHNCVYQE LYKDIRNFDGEPTGSILKNIGSEYKVIFVGDACMAPSELFSIGGVIDYYSHNDTPGIE WLRRFAEHFRYCVWLNPMPERTWFHTTIQPVARLIPMFPLTLDGLERAVQRLIVRH" misc_feature complement(2118004..2119161) /locus_tag="Deba_1905" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:197401" misc_feature complement(2118001..2119140) /locus_tag="Deba_1905" /note="Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]; Region: CoxE; COG3552" /db_xref="CDD:33354" gene complement(2119163..2120020) /locus_tag="Deba_1906" /db_xref="GeneID:9494374" CDS complement(2119163..2120020) /locus_tag="Deba_1906" /note="COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR003959; KEGG: dae:Dtox_3608 ATPase AAA; PFAM: ATPase AAA; SMART: ATPase AAA; SPTR: C8VW33 ATPase AAA; PFAM: ATPase family associated with various cellular activities (AAA)" /codon_start=1 /transl_table=11 /product="ATPase AAA" /protein_id="YP_003807865.1" /db_xref="GI:302343336" /db_xref="GeneID:9494374" /translation="MSASFDKFVGTDKYIVSNALRDVVNVAIALGRPLLVKGEPGTGK TLLAHNIARGLGKELIIWNVKSTTKAKDGLYIYDTVQRLNDSRFGGGDVSDIKRYIHL GQLGVAFAHPDQPVLLIDEVDKADIEFPNDLLNELDEMSFFIPETGQTVKAQRRPIVV ITSNSEKELPDAFLRRCVFHYIEFPDEELMRKIVGVHYPGLDENLLREVLKKFYWLRE IDGFRKKPSTSELLDWIQALVAGGMSPDKIAKELPFAGALIKKEQDMEVLGAAAAGTG ARLGLRSRW" misc_feature complement(2119466..2119969) /locus_tag="Deba_1906" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2119457..2119930) /locus_tag="Deba_1906" /note="ATPases associated with a variety of cellular activities; Region: AAA; smart00382" /db_xref="CDD:128665" misc_feature complement(2119886..2119909) /locus_tag="Deba_1906" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2119532..2119534,2119661..2119663, 2119883..2119906)) /locus_tag="Deba_1906" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2119658..2119675) /locus_tag="Deba_1906" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2119493..2119495) /locus_tag="Deba_1906" /note="arginine finger; other site" /db_xref="CDD:99707" gene 2120302..2120469 /locus_tag="Deba_1907" /db_xref="GeneID:9494375" CDS 2120302..2120469 /locus_tag="Deba_1907" /note="KEGG: dsa:Desal_1511 hypothetical protein; SPTR: C6BS97 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807866.1" /db_xref="GI:302343337" /db_xref="GeneID:9494375" /translation="MFGIESLELAWAYILCILASLLCVVYGVVKWNETGPPSGELRNE SAKQRKKRKKT" gene 2120530..2122137 /locus_tag="Deba_1908" /db_xref="GeneID:9494376" CDS 2120530..2122137 /locus_tag="Deba_1908" /note="COGs: COG0591 Na+/proline symporter; InterPro IPR018212:IPR001734:IPR019900; KEGG: dsa:Desal_1510 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: C6BS96 Na+/solute symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily" /codon_start=1 /transl_table=11 /product="SSS sodium solute transporter superfamily" /protein_id="YP_003807867.1" /db_xref="GI:302343338" /db_xref="GeneID:9494376" /translation="MTPFVIKIVTALIYLAVIFYLGYKGWKETKSASDYMLAGRQMNP FVMAMSYGATFISTSAIIGFGGAAAMFGFPLLWLTFLNIFVGIFIAMAFLGKRTRRMG VALDAHTFPELLGLRYQSRFIQGFSGLVIFLFIPVYAAAVLIGISRMLEVSLGIPYDV ALIGFTVILAIYVITGGLKAVMYTDAFQGSVMFVMMIILVAFAYYSLGGFTEAHQQLT DMAPLMPEKLVKGGMKGWTQGAVAGSPLWLTIYTTIVYGVGIGVLAQPQLSVRFMTVA SDRELNRGVLYGGVFILFMTGVAFVVGALSNVVFYKALGKISIAVAEGNSDKIIPEYI TQMMPEWFGVLFLLAMFAAAMSTLSSQFHVGGTSLGRDFYERGLGKKAANEVMLNQAG IGVTILITLIWGKYLPESIIAPATAFFFGLCAAAFLPAYVLGLYWKGMTKIGAVVSMA GGFAASMFYLLFVHTKESQAIGLCKSMFGVDSLAMLAEKGSAGFMLQWVDPNIIALPV SFILAVVASLLTRKMDDEHLNLCWRHL" misc_feature 2120551..2122092 /locus_tag="Deba_1908" /note="Predicted symporter [General function prediction only]; Region: DhlC; COG4147" /db_xref="CDD:33899" misc_feature 2120551..2121969 /locus_tag="Deba_1908" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" gene 2122224..2123102 /locus_tag="Deba_1909" /db_xref="GeneID:9494377" CDS 2122224..2123102 /locus_tag="Deba_1909" /note="KEGG: dol:Dole_2440 hypothetical protein; SPTR: A8ZW10 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807868.1" /db_xref="GI:302343339" /db_xref="GeneID:9494377" /translation="MDLPEKPLAREVVKPVKGPSRLPWLIALVVLALAVVPLYFMWKA GAVGDQAAKPPSAATQQGQAGQAGVPTPPGPSKHGEVIELNKPEDAAPGGEQDQRKKQ FGLDKSVDAVLRSDETVKVGDQSVPVSELERKLAVQSRGELLERPIDGSSQVSAWGVH LVNPNDNLWDIHFVLLREYLATRGLKLAADADEPTSGGYSSGVGRTLKFAEHMVGVYN LKTGRMSSDLSTLEPGQKLVVFNLSELFGALAKINPQELAQVRFDGRTLFFPADEAAA QQAESQALQQIPDQKR" gene 2123111..2124142 /locus_tag="Deba_1910" /db_xref="GeneID:9494378" CDS 2123111..2124142 /locus_tag="Deba_1910" /note="COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: mxa:MXAN_5908 histone deacetylase family protein; PFAM: histone deacetylase superfamily; SPTR: Q1CZX8 histone deacetylase family protein; PFAM: histone deacetylase domain" /codon_start=1 /transl_table=11 /product="histone deacetylase superfamily" /protein_id="YP_003807869.1" /db_xref="GI:302343340" /db_xref="GeneID:9494378" /translation="MHIGLVHHPVFQEHDPGRFHVEVPGRLRVLDQAMRGWTGLRNCQ RMPLRQATEAELRRVHHPAHIARVAATEGKHTALDADTGVSPRSFEAALLAAGSLIDL CDRAMIGHFYNGMALVRPPGHHATPDRAMGFCLFNNVAVAAAHLIEARGLERVLIVDW DVHHGNGTEDTFYSEGRVMYFSTHQSPMYPGSGPVSAVGSGAGEGRTVNAPMSAGRGD LEYIRVFKDLLTPIARCFKPQFILVSAGFDAHHEDPLGGMRITSSGFAALTQILMELS SEFCPGRLVLTLEGGYAVSALARSVLACLDVLAGRREDELIAQAAEVEPPRIIARSRE IMGGYWSLD" misc_feature 2123111..2124109 /locus_tag="Deba_1910" /note="Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]; Region: AcuC; COG0123" /db_xref="CDD:30472" misc_feature 2123150..2124037 /locus_tag="Deba_1910" /note="Histone deacetylase domain; Region: Hist_deacetyl; cl02986" /db_xref="CDD:194501" gene 2124269..2124553 /locus_tag="Deba_1911" /db_xref="GeneID:9494379" CDS 2124269..2124553 /locus_tag="Deba_1911" /note="COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: sfu:Sfum_3504 glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; SPTR: A0LP23 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(Gln) amidotransferase, C subunit" /protein_id="YP_003807870.1" /db_xref="GI:302343341" /db_xref="GeneID:9494379" /translation="MKISAEEVAQVAALARLKLDEAMTTMLTEQMNDILGYMDKLGEL DTSGVPATNHALTLTGAMRPDQIAPSLARDEALANAPRGNGESFVVPRVI" misc_feature 2124269..2124550 /locus_tag="Deba_1911" /note="Glu-tRNAGln amidotransferase C subunit; Region: Glu-tRNAGln; cl00495" /db_xref="CDD:186035" gene 2124562..2126022 /locus_tag="Deba_1912" /db_xref="GeneID:9494380" CDS 2124562..2126022 /locus_tag="Deba_1912" /note="COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR020556:IPR000120:IPR004412; KEGG: dal:Dalk_4493 glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: amidase; SPTR: B8FCK9 Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(Gln) amidotransferase, A subunit" /protein_id="YP_003807871.1" /db_xref="GI:302343342" /db_xref="GeneID:9494380" /translation="MNYHDLTIAQASQLLAKGELSSVELTKAMLERVAATEERVHAYI TLTPELALEQAANADKMRAQGQAGPLTGVPAGVKDVLCTRGVATTCASRMLQNFTPPY SATLVRKLEAAGMVMLGKHNMDEFAMGSSTENSAFGPTSNPWDLRAVPGGSSGGSAAS VAARSCFYAIGTDTGGSIRQPASHCGVVGLKPTYGRVSRLGLVAFASSLDQAGPITRS VADAATVLQVIAGHDPADSTSAPRPVPDYAAALRRGVKGLRLGVPKEYFVAGMDPQVE DAVRAAIATLEGLGAQVRPISLPHAEYSLAVYYIIAPAECSSNLARYDGVKYGLSIRP EGADLLEMYTATRSQGFGKEVIRRIMLGTYVLSAGYYDAYYNKASQVRTLLIEDFAAA FKEVDAIVTPVAPTPAFDKGQMTDDPMQMYLSDIFTLSCNLAGLPGMSLPCGFAQSGR PIGLQLMAPHFAEETLLAVGQAFQEATDFHARLAAI" misc_feature 2124562..2126007 /locus_tag="Deba_1912" /note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154" /db_xref="CDD:30503" misc_feature 2124604..2125983 /locus_tag="Deba_1912" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene complement(2126318..2126872) /locus_tag="Deba_1913" /db_xref="GeneID:9494381" CDS complement(2126318..2126872) /locus_tag="Deba_1913" /note="KEGG: hypothetical protein LOC100014749; SPTR: C5WGG8 Truncated apo-citrate lyase phosphoribosyl-dephospho-CoA transferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807872.1" /db_xref="GI:302343343" /db_xref="GeneID:9494381" /translation="MTSKKPWLGLGLVLTAVTAATIWFMLARQPQDIAGWQNLAWGQT QAQVAKLRKLEPWTESAAKPVCALGEPVELVDEKFRVYLYFSQKAPEGKLLAVTMMAQ GHIESFAKLLDQLKAVYGQPSGQDDTFAFKSWQWSRPSGRLELMIVQAPDDLGLGDPL GENPRPAQAEDDAASCSLRYFAAD" gene 2127000..2127458 /locus_tag="Deba_1914" /db_xref="GeneID:9494382" CDS 2127000..2127458 /locus_tag="Deba_1914" /note="COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: dal:Dalk_0151 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: B8FMJ4 thioesterase superfamily protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003807873.1" /db_xref="GI:302343344" /db_xref="GeneID:9494382" /translation="MNQPEPYMTDDQLRAIFAGLERHHLHAMFGVKVERAADGQAVAR CTLGQNHMNILGSIHGGVYYVLLDVASYCAALTVLPVSANAATIDIHVSVLRPAKIGD EMELRGVVRKRGRSLIFLESQALVNGKPAALAHVTKSIAPFDMRKLMQAG" misc_feature 2127087..2127419 /locus_tag="Deba_1914" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(2127171..2127173,2127258..2127260,2127279..2127290) /locus_tag="Deba_1914" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(2127174..2127176,2127180..2127182,2127189..2127191, 2127261..2127275,2127279..2127281) /locus_tag="Deba_1914" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(2127177..2127179,2127201..2127206,2127213..2127218, 2127258..2127260) /locus_tag="Deba_1914" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(2127455..2128990) /locus_tag="Deba_1915" /db_xref="GeneID:9494383" CDS complement(2127455..2128990) /locus_tag="Deba_1915" /note="COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: bbe:BBR47_28890 hypothetical protein; PFAM: aldo/keto reductase; SPTR: C0ZDK7 Putative uncharacterized protein; PFAM: Aldo/keto reductase family" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="YP_003807874.1" /db_xref="GI:302343345" /db_xref="GeneID:9494383" /translation="MARVLNEKAASAEATAKALSRVGLAHGPLGRSGLVVSRIGFGCY RVGPSEPDQRQALEAALLAGVNLIDTSANYADGGSEMLVGQTLAELGQRGRPRREQVV IVSKGGYLQGFNLALSQRRRQQGRPFPELLELGPNLEHCIHPDFLADQIGRSLERLGV ERIDVYLLHNPEYYLGWATQKQGLELDQARAEFYRRLKAAMMHLEREAKAGRIGWHGL SSNTMGHRPADPEFVSLSQVCALAEDLGPGHHFLAAQTPLNLLEPGAAVNVNQPGGQT FLGMAHAQGLAVLINRPLNAMTPDGHLVRLAQGPAVAAPPPGAIVDGLAELAALEAQG QELLAPLAQAGRLPAEALAALPAAEGLGRHWDSFSGLEQWATIRDGYLRPRLEFVRQA VARAAGDAPAVGQWLERLGQSATALHQAIDALYQAMAAKQAQQIAKGFGERFGPWVAA DGGLAQTALRAARATKGVSCVLLGMRRPAYVEDALAELRRPLPQADAADLWRALAERP LWP" misc_feature complement(<2128109..2128909) /locus_tag="Deba_1915" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature complement(order(2128109..2128120,2128226..2128228, 2128328..2128333,2128481..2128486,2128673..2128675, 2128769..2128771,2128784..2128786,2128859..2128867)) /locus_tag="Deba_1915" /note="active site" /db_xref="CDD:119408" misc_feature complement(order(2128484..2128486,2128673..2128675, 2128769..2128771,2128784..2128786)) /locus_tag="Deba_1915" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene complement(2129003..2130352) /locus_tag="Deba_1916" /db_xref="GeneID:9494384" CDS complement(2129003..2130352) /locus_tag="Deba_1916" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078:IPR020441:IPR001789:IPR003593:IPR 002197:IPR011006:IPR009057; KEGG: drt:Dret_0077 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: C8WZA4 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003807875.1" /db_xref="GI:302343346" /db_xref="GeneID:9494384" /translation="MNRILVVDDEKNYLVVLEALLRGEGYDVRTADNGQAALRLADED EPDLVITDMKMPRMSGIELIQALRVDHPDLPVIVMTAYGTVENAVEAMKLGATDYIIK PFENRELLLTTEKTLRMRRLMTQNRLLREELAGYGEIIGQSKPMRQVFALVDKVADAK ATVLITGESGTGKELIARALHSRSSRAEEPFVAVNCMAITETLLESELFGHERGSFTG ATERRKGRFELAHRGTLFLDEIGEISPTTQVKLLRVLQERTFERVGGNQPIAVDVRIV AATNRDLGAMVKKGAFREDLFYRLNVVRLDMPPLRERTDDLPLLVAHFVKKYAAEVGR QPPTVSAEAMQAIYRHPWPGNVRELENALERAVILAGGEITASDLPLEMQGGRGEKSV GPELPEGMSINDAVEDLEKRMIQRALGEAGGVAAHAAAALGLTKSNLAYKMKKYGLG" misc_feature complement(2129006..2130352) /locus_tag="Deba_1916" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature complement(2130038..2130340) /locus_tag="Deba_1916" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2130044..2130049,2130056..2130058, 2130113..2130115,2130173..2130175,2130197..2130199, 2130326..2130331)) /locus_tag="Deba_1916" /note="active site" /db_xref="CDD:29071" misc_feature complement(2130197..2130199) /locus_tag="Deba_1916" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2130173..2130181,2130185..2130190)) /locus_tag="Deba_1916" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2130041..2130049) /locus_tag="Deba_1916" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2129426..2129875) /locus_tag="Deba_1916" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2129831..2129854) /locus_tag="Deba_1916" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2129513..2129515,2129639..2129641, 2129828..2129851)) /locus_tag="Deba_1916" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2129636..2129653) /locus_tag="Deba_1916" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2129456..2129458) /locus_tag="Deba_1916" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(2130369..2131838) /locus_tag="Deba_1917" /db_xref="GeneID:9494385" CDS complement(2130369..2131838) /locus_tag="Deba_1917" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR004358:IPR003661:IPR003594:IPR009082:IPR 005467; KEGG: sfu:Sfum_0854 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: A0LGJ9 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_003807876.1" /db_xref="GI:302343347" /db_xref="GeneID:9494385" /translation="MKPGAESVAGQRRQPEISGEQSFQLVEYYSVTSLVIILLFALVI AWTVSRRNTEMVIAKQGQFAQLLAENLNHQVMNRFVVTALREYGGVNVGQPEQFKLLD AVVRNTIPLATDDTQTFRVLKVNILDLDGNIIYSTQPEYIGRVGDESGAFRIASSGGS YNSLQPGVEMFTLGPGPKRTMRTLLPLRDQRRRTAELGPPRAVFELEMDVSEDFQQVW HGQLLVMAALMVMMVVLFVILRTIVMRGQRVMARQTEERAQLLEQLNQSERLASLGRM IAGVAHEIRNPLGIIRSTAELLGSRADSASKPLAGVIVEESNRLNQIVTEFLDFARPQ RPNLTPVFLDEVLGRNLLVLEPEIKRLGIVVQRDFKAQPLIVVGDADLLYRAFLNIFN NAVQAMEQGGELRVSTFVEAHDGVDWGVVSVDDSGPGIDPEARAKILEPFFTTKEKGT GLGLSIVNSIVASHGGKLSIESSPLGGARIKVRLALAQQ" misc_feature complement(2130843..2131031) /locus_tag="Deba_1917" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2130858..2130860,2130870..2130872, 2130879..2130881,2130891..2130893,2130900..2130902, 2130912..2130914,2130957..2130959,2130966..2130968, 2130978..2130980,2130987..2130989,2130999..2131001, 2131011..2131013)) /locus_tag="Deba_1917" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2130993..2130995) /locus_tag="Deba_1917" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2130387..2130692) /locus_tag="Deba_1917" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2130399..2130401,2130405..2130410, 2130423..2130425,2130429..2130431,2130477..2130488, 2130549..2130551,2130564..2130566,2130570..2130572, 2130576..2130578,2130582..2130584,2130651..2130653, 2130660..2130662,2130672..2130674)) /locus_tag="Deba_1917" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2130660..2130662) /locus_tag="Deba_1917" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2130480..2130482,2130486..2130488, 2130564..2130566,2130570..2130572)) /locus_tag="Deba_1917" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2131858..2133264) /locus_tag="Deba_1918" /db_xref="GeneID:9494386" CDS complement(2131858..2133264) /locus_tag="Deba_1918" /note="COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672; KEGG: hor:Hore_19060 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); SPTR: B8CZD5 Glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase" /codon_start=1 /transl_table=11 /product="phosphoglucose isomerase (PGI)" /protein_id="YP_003807877.1" /db_xref="GI:302343348" /db_xref="GeneID:9494386" /translation="MANQPVRLDYGFCAAERLGAAAGLDDAALARLQAEFERAMTVVS AQKAAGKLGFMDLPFMGQDGLAPILAEAKRLGEFCENFVVLGIGGSALGATAVDMALG GCLRHAFARPAGAMRLFVADNSDPRMFAALLDNLDPRATAFNVVSKSGSTAETMSQYL AARQMLEQKLGREEALRRLVFTTDPQAGYLRKIIAAGDDIAVLSVPPNVGGRYSVLSA VGLLPLACAGHDVAALLEGAAQMAGRCQSPVLGENPALMLAALAVESFRRGRNIFVMM PYASDLLGLAQWFGQLWAESLGKAKALDGAEVHVGQTPVAAVGATDQHSQLQLYMEGP QDKLICFLTIDDYGRDLTIPALHPELTGLSYLGGQTMSRLIKAEATATAAALARQGRP SLSLRLPRIDANVIGQVFYLLELATVAAGAALGIDPLDQPGVELGKQLTYGLMGRQGF EDQAAQVRAMDAGDRFLI" misc_feature complement(2131909..2133159) /locus_tag="Deba_1918" /note="glucose-6-phosphate isomerase; Provisional; Region: PRK00973" /db_xref="CDD:179193" misc_feature complement(2132584..2133060) /locus_tag="Deba_1918" /note="Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015" /db_xref="CDD:88410" misc_feature complement(order(2132632..2132634,2132809..2132811, 2132818..2132826,2132995..2133000,2133004..2133006)) /locus_tag="Deba_1918" /note="active site" /db_xref="CDD:88410" misc_feature complement(order(2132782..2132784,2132791..2132793, 2132803..2132805,2132890..2132901)) /locus_tag="Deba_1918" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88410" misc_feature complement(2131933..2132454) /locus_tag="Deba_1918" /note="Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016" /db_xref="CDD:88411" misc_feature complement(order(2132113..2132115,2132122..2132124, 2132146..2132148,2132152..2132154,2132269..2132271, 2132278..2132283,2132290..2132295,2132302..2132310, 2132314..2132316,2132368..2132373,2132380..2132382, 2132392..2132394,2132428..2132430,2132452..2132454)) /locus_tag="Deba_1918" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88411" misc_feature complement(order(2132380..2132382,2132392..2132394)) /locus_tag="Deba_1918" /note="active site" /db_xref="CDD:88411" gene 2133474..2133716 /locus_tag="Deba_1919" /db_xref="GeneID:9494387" CDS 2133474..2133716 /locus_tag="Deba_1919" /note="KEGG: sat:SYN_03569 cytoplasmic protein; SPTR: Q2LTN7 Hypothetical cytosolic protein" /codon_start=1 /transl_table=11 /product="cytoplasmic protein" /protein_id="YP_003807878.1" /db_xref="GI:302343349" /db_xref="GeneID:9494387" /translation="MKDKLDRLADQVLTLDDHELSQLLPDIQKRMQHCDHSPEWERSV VAFFLINAMRFKNNAALRCSQAAPPSEERPRLRLVK" gene complement(2133709..2135067) /locus_tag="Deba_1920" /db_xref="GeneID:9494388" CDS complement(2133709..2135067) /locus_tag="Deba_1920" /note="COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: dol:Dole_2133 recombination factor protein RarA; PFAM: ATPase AAA; SMART: ATPase AAA; SPTR: A8ZU04 ATPase AAA; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA)" /codon_start=1 /transl_table=11 /product="ATPase AAA" /protein_id="YP_003807879.1" /db_xref="GI:302343350" /db_xref="GeneID:9494388" /translation="MSLFERESGNVSSGVAPLAERMRPRAIDEIVGQNHLLGPGKALR RLLEEGRPISLILWGPPGTGKTTLARLLAQLWDTDFTEFSAVLSGVADVRRAVEEARA KLKGGRRTTLFVDEIHRFNKSQQDAFLPHVESGVITLVGATTENPSFEVAPALLSRLR VLVLHPLEEDHLALILERALADAERGLGGRDVELTPEAKQHMIQAAYGDARRLLGTLE VAVEAAPLGLGGLKRIDQALAEDAVGRRMLRYDKAGEEHYNLISALHKSLRGSDVDAA LYWLTRMLEAGEDPHFILRRLTRFACEDVGLADSYALNQLVAAWSAFDKIGLPEADLM LAQAVVYLALAPKSNAVYAAMKAVRDDVRRFGPLEVPLQIRNAPTKLMKNLDYGKGYE YPHDFAEAMVGQEYMPPELVGKRYYHPTQRGREKFIGERMAQIVQARARLRKKEKGDE TT" misc_feature complement(2133748..2135019) /locus_tag="Deba_1920" /note="recombination factor protein RarA; Reviewed; Region: PRK13342" /db_xref="CDD:183986" misc_feature complement(2134579..2134977) /locus_tag="Deba_1920" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2134870..2134893) /locus_tag="Deba_1920" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2134636..2134638,2134723..2134725, 2134867..2134890)) /locus_tag="Deba_1920" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2134720..2134737) /locus_tag="Deba_1920" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2134594..2134596) /locus_tag="Deba_1920" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(2133763..2134260) /locus_tag="Deba_1920" /note="MgsA AAA+ ATPase C terminal; Region: MgsA_C; cl13440" /db_xref="CDD:196613" gene complement(2135064..2135996) /locus_tag="Deba_1921" /db_xref="GeneID:9494389" CDS complement(2135064..2135996) /locus_tag="Deba_1921" /note="COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641:IPR016035; KEGG: sfu:Sfum_1691 patatin; PFAM: patatin; SPTR: A0LIX6 patatin; PFAM: patatin-like phospholipase" /codon_start=1 /transl_table=11 /product="patatin" /protein_id="YP_003807880.1" /db_xref="GI:302343351" /db_xref="GeneID:9494389" /translation="MKRDNATYGVDLVLGGGGARGFAHVGVLEVLWDGGVPVRSIIGA SAGALAGGAFAAGLTPDRMRAKVIEYAGSHLARDAKLRSLVTSSENGSASSLVDKVGR LFVQSWLLRSFLMGPSVMGGQFFQESVDFFLPDARIEDLPLPFACVATDVHSGEPVVF DRGPLRKAVLASSAVPGIAPLVNVGGRWLMDGGVACLIPTACARRRGHEKIVAVNVDR DVFSDGIPDQALETYLRAGEIQSYHLARRMLRDADLVIEPDVGEVHWADFMAGELLME RGRAATRPALEQVRALLRPESPWRRVKKALGFAS" misc_feature complement(2135349..>2135672) /locus_tag="Deba_1921" /note="Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396" /db_xref="CDD:196212" gene 2136123..2136338 /locus_tag="Deba_1922" /db_xref="GeneID:9494390" CDS 2136123..2136338 /locus_tag="Deba_1922" /note="InterPro IPR018278:IPR001911; KEGG: pca:Pcar_2255 30S ribosomal protein S21; SPTR: Q1JW03 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; manually curated; PFAM: ribosomal protein S21; TIGRFAM: ribosomal protein S21" /codon_start=1 /transl_table=11 /product="ribosomal protein S21" /protein_id="YP_003807881.1" /db_xref="GI:302343352" /db_xref="GeneID:9494390" /translation="MQVQVMDNNVEKAIKALKRKLTKEGVFRQLKEKRWHEKPSDMRR RKQRQARRRMRRQIARARARAEARRHF" misc_feature 2136123..>2136248 /locus_tag="Deba_1922" /note="Ribosomal protein S21; Region: Ribosomal_S21; cl00529" /db_xref="CDD:193854" gene complement(2136404..2137084) /locus_tag="Deba_1923" /db_xref="GeneID:9494391" CDS complement(2136404..2137084) /locus_tag="Deba_1923" /note="COGs: COG1280 Putative threonine efflux protein; InterPro IPR001123; KEGG: cth:Cthe_0680 lysine exporter protein LysE/YggA; PFAM: lysine exporter protein (LYSE/YGGA); SPTR: A3DD86 lysine exporter protein (LYSE/YGGA); PFAM: LysE type translocator" /codon_start=1 /transl_table=11 /product="lysine exporter protein (LYSE/YGGA)" /protein_id="YP_003807882.1" /db_xref="GI:302343353" /db_xref="GeneID:9494391" /translation="MDGVSLATGMGLWGLGLSSFAIGFSGAVMPGPVLAMTITHSVRQ GFWAGPLIVLGHGIIEVTLVAALLAGLGPLLGLDAVAGTIGVVGGLILLHMAVGMLRG LPRASLAAVTSGQGAVKRGPVADGLLLSAANPYFILWWATVGLSLLVVARDPRWGALG VVVFYLGHISADLVWYGLVSLAVAKGRRWLSDGIYRVIIGCCAVTLLGFSVYFGVGAA RMLLGLWG" misc_feature complement(2136443..2137015) /locus_tag="Deba_1923" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene complement(2137093..2137305) /locus_tag="Deba_1924" /db_xref="GeneID:9494392" CDS complement(2137093..2137305) /locus_tag="Deba_1924" /note="KEGG: scl:sce3108 hypothetical protein; SPTR: A8RMA2 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807883.1" /db_xref="GI:302343354" /db_xref="GeneID:9494392" /translation="MPKTFDITIGKPCPACGAALDENGDCPACRQRGGPPAGQWTVCQ PPSAATDCDCPVVGYVKIHAPWCKYS" gene complement(2137311..2138744) /locus_tag="Deba_1925" /db_xref="GeneID:9494393" CDS complement(2137311..2138744) /locus_tag="Deba_1925" /note="COGs: COG1362 Aspartyl aminopeptidase; InterPro IPR001948; KEGG: dol:Dole_2226 aminopeptidase 1; PFAM: peptidase M18 aminopeptidase I; SPTR: A8ZUJ8 M18 family aminopeptidase; PFAM: Aminopeptidase I zinc metalloprotease (M18)" /codon_start=1 /transl_table=11 /product="peptidase M18 aminopeptidase I" /protein_id="YP_003807884.1" /db_xref="GI:302343355" /db_xref="GeneID:9494393" /translation="MAKLSKKKLDELNEKLLYQPKNIWETSSDAQRKEIMALAERYKR FLSVAKTERLAVTEIKRQALEADFAPLGAKAKGKRWFLEFRGKMAALVVLGKEPATAG LRIIGAHLDAPRLDLKMNPLYEDQGLAFLKTHYYGGVKKYQWLARPMALLGVVCAKDG RVVPLALGEDPDGPVFTVLDVLPHLSRRSQGEKKVNEAFEAERMNLLIAGLPLDSDEK GEKVKMAVLQRLYDEYGLTEHDLISAELEIVPAGPARDVGLDRAFVGGYGQDDRAAAF AAMAAILDLQNPLHTAVALFVDKEEVGSEGATGARSRVFELMVSSILEAAGQPADYLA VRRVLAASQAISADAAAALDPDYPELHEKRNAALLGHGVALSKYTGSGGKYSTSDADA EYVAWIRSVWDGAGAPWQVAAMGKIDEGGGGTIAKFLAEHGMEVIDAGPPLLSMHSPF EIGHKADIHAARQAFLAFYQAAARRLD" misc_feature complement(2137335..2138657) /locus_tag="Deba_1925" /note="M18 Peptidase Aminopeptidase I; Region: M18_API; cd05659" /db_xref="CDD:193535" misc_feature complement(order(2137389..2137391,2137395..2137397, 2137401..2137415,2137440..2137448,2137455..2137457, 2137464..2137466,2137482..2137484,2137491..2137505, 2137512..2137514,2137518..2137520,2137536..2137538, 2137545..2137550,2137557..2137562,2137566..2137577, 2137587..2137598,2137611..2137616,2137641..2137643, 2137650..2137652,2137671..2137688,2137692..2137694, 2137725..2137730,2137737..2137742,2137746..2137748, 2137782..2137787,2137794..2137796,2137806..2137814, 2137821..2137832,2137839..2137844,2137956..2137982, 2137989..2137991,2138010..2138021,2138025..2138033, 2138055..2138060,2138070..2138072,2138076..2138078, 2138112..2138126,2138130..2138132,2138136..2138144, 2138184..2138210,2138214..2138228,2138232..2138237, 2138241..2138246,2138271..2138279,2138301..2138303, 2138307..2138309,2138316..2138327,2138331..2138354, 2138361..2138363,2138370..2138372,2138376..2138381, 2138385..2138393,2138397..2138399,2138484..2138486, 2138490..2138492,2138586..2138588)) /locus_tag="Deba_1925" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:193535" misc_feature complement(order(2137404..2137409,2137476..2137481, 2137581..2137583,2137617..2137619,2137692..2137694, 2137698..2137703,2137842..2137847,2137932..2137937, 2138418..2138420)) /locus_tag="Deba_1925" /note="putative active site [active]" /db_xref="CDD:193535" misc_feature complement(order(2137404..2137406,2137701..2137703, 2137842..2137847,2137935..2137937,2138418..2138420)) /locus_tag="Deba_1925" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193535" gene complement(2138816..2139574) /locus_tag="Deba_1926" /db_xref="GeneID:9494394" CDS complement(2138816..2139574) /locus_tag="Deba_1926" /note="COGs: COG1189 rRNA methylase; InterPro IPR002942:IPR002877:IPR004538; KEGG: ppd:Ppro_1155 hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein; SPTR: A1AN58 Hemolysin A; TIGRFAM: hemolysin A; PFAM: S4 domain; FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein" /codon_start=1 /transl_table=11 /product="hemolysin A" /protein_id="YP_003807885.1" /db_xref="GI:302343356" /db_xref="GeneID:9494394" /translation="MASRTRLDQRLVELGLAPSRAKAQALIMAGLARIDGQTARKPGQ SVEPEAAVSVDGPEHPYVSRGGLKLAGALDHFGLDPAGLSCLDVGASTGGFTDCLLQR GAAEVTAVDVGYGQLAWKLRVDPRVKAIERQNVRHMAIEVAPGPYGLIVMDVSFIGLR LVLPNITPRLALGGRLLAMVKPQFEAGREHVGSGGVVRDAAARQQAVDGVADCLRELG LEVLGQCPSPILGPKGNVEIFLLAQKCAPSDARP" misc_feature complement(2138843..2139565) /locus_tag="Deba_1926" /note="Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: COG1189" /db_xref="CDD:31382" misc_feature complement(2139392..2139559) /locus_tag="Deba_1926" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature complement(order(2139434..2139436,2139440..2139463, 2139482..2139484,2139488..2139493,2139500..2139505, 2139509..2139514,2139518..2139523,2139557..2139559)) /locus_tag="Deba_1926" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature complement(2138843..2139394) /locus_tag="Deba_1926" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(2139578..2141485) /locus_tag="Deba_1927" /db_xref="GeneID:9494395" CDS complement(2139578..2141485) /locus_tag="Deba_1927" /EC_number="2.2.1.7" /note="COGs: COG1154 Deoxyxylulose-5-phosphate synthase; InterProIPR020826:IPR005475:IPR005476:IPR009014:IPR 015941:IPR005477; KEGG: gsu:GSU0686 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: transketolase; transketolase; SPTR: Q74FC3 1-deoxy-D-xylulose-5-phosphate synthase 1; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase" /codon_start=1 /transl_table=11 /product="deoxyxylulose-5-phosphate synthase" /protein_id="YP_003807886.1" /db_xref="GI:302343357" /db_xref="GeneID:9494395" /translation="MQPSEQTTYEILAKIDSPADVKKLSLDQLKQLADEVRRFIIAHV VETGGHLAPSLGVVELTLALHAVFDCPNDKIVWDVGHQTYAHKIITGRRDQFCTLRQL DGLSGFPKRRESAYDAFDTGHSSTSISAALGMAVGKRLRGASGKVLAVIGDGSLTGGM AYEGLNQAGFLNEDLIVVLNDNGMSIAPNVGALSKFVSRSLSGGAYQRFRKELERFLK NMPGVGENLVELARRAEESFRAFFSPSMLFEAFRFNYVGPVDGHDLGRLINVFGNVAP IKGPHLIHVITQKGKGYRPAEENPAHFHGVGKIAQPPATADCGLIPPPKPKIQTYTEV FGRTMVQLAKERRDIVAITAAMPEGTGLQSFAESYRDRFIDVGIAEQHAVTFAAGLAC EGFRPVVAIYSTFMQRAFDQVVHDVCLPKLPVVLAMDRAGVVGEDGETHQGLLDLSFL RCAPNLSIMAPADENELRHMLFSALDHDGPTALRYPRGAGLGAHTDEPLRPLPWGKGQ LLSDGGDVLLVGIGVGVELCRLAGVMLSAEGVSAAVVNARFVKPLDDELICQLAQRCG RVVTVEENMLAGGFGAAVLEALAAHGLRPKTRLIGVNDRYVEHGAQGKLRQRLGLTPE AVAAAARALLA" misc_feature complement(2139614..2141467) /locus_tag="Deba_1927" /note="1-deoxy-D-xylulose-5-phosphate synthase; Provisional; Region: PRK05444" /db_xref="CDD:180086" misc_feature complement(2140607..2141344) /locus_tag="Deba_1927" /note="TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS...; Region: TPP_DXS; cd02007" /db_xref="CDD:73294" misc_feature complement(order(2140934..2140936,2140940..2140942, 2141021..2141032,2141114..2141116)) /locus_tag="Deba_1927" /note="TPP-binding site; other site" /db_xref="CDD:73294" misc_feature complement(2140025..2140489) /locus_tag="Deba_1927" /note="Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033" /db_xref="CDD:132916" misc_feature complement(order(2140052..2140054,2140115..2140120, 2140166..2140168,2140175..2140177,2140250..2140255, 2140262..2140264,2140316..2140324,2140328..2140333, 2140340..2140357,2140361..2140363,2140370..2140372, 2140421..2140423,2140439..2140441,2140445..2140447)) /locus_tag="Deba_1927" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature complement(order(2140124..2140126,2140130..2140135, 2140139..2140144,2140169..2140171,2140175..2140177, 2140256..2140258,2140262..2140267,2140346..2140354, 2140361..2140363,2140421..2140423)) /locus_tag="Deba_1927" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature complement(order(2140262..2140264,2140271..2140273, 2140346..2140348,2140352..2140354)) /locus_tag="Deba_1927" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132916" misc_feature complement(2139614..2139910) /locus_tag="Deba_1927" /note="Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780" /db_xref="CDD:145764" gene complement(2141535..2142428) /locus_tag="Deba_1928" /db_xref="GeneID:9494396" CDS complement(2141535..2142428) /locus_tag="Deba_1928" /note="COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: gsu:GSU1765 geranyltranstransferase; PFAM: polyprenyl synthetase; SPTR: Q74CA9 Geranyltranstransferase; PFAM: polyprenyl synthetase" /codon_start=1 /transl_table=11 /product="polyprenyl synthetase" /protein_id="YP_003807887.1" /db_xref="GI:302343358" /db_xref="GeneID:9494396" /translation="MSVDLKQYLAQRRQMVDAALEAWLPADESGGVILKAMRYSLFAG GKRLRPILCLAGAEAVGGDPRRAMFCACALEMIHTYSLIHDDLPAMDDDDYRRGVPTN HKVFGQGMAVLAGDGLLTQAMVLLTDAAAVGDLPAERARQAANVVMRAAGHLGMVGGQ AADLLAETMEPDLAMVDYIHARKTGALICASLEAGGILAGADRDRLSRLVRYGRRIGL AFQIADDLLDLEGDAETLGKATGADAAKGKMTYPAVLGPAQARQTGQRLVEEAVAIIA ELGPPARPLELLAHYIMSRTH" misc_feature complement(2141544..2142338) /locus_tag="Deba_1928" /note="Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685" /db_xref="CDD:173833" misc_feature complement(order(2141685..2141687,2141700..2141702, 2141715..2141717,2141745..2141747,2141754..2141759, 2141868..2141870,2141877..2141882,2141940..2141942, 2141949..2141951,2142138..2142143,2142156..2142161, 2142171..2142179,2142183..2142191,2142198..2142200)) /locus_tag="Deba_1928" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature complement(order(2142156..2142161,2142168..2142191)) /locus_tag="Deba_1928" /note="chain length determination region; other site" /db_xref="CDD:173833" misc_feature complement(order(2141685..2141687,2141700..2141702, 2141715..2141717,2141745..2141747,2141754..2141759, 2141880..2141882,2141940..2141942,2142138..2142143, 2142156..2142158,2142171..2142176)) /locus_tag="Deba_1928" /note="substrate-Mg2+ binding site; other site" /db_xref="CDD:173833" misc_feature complement(order(2141754..2141759,2141880..2141882, 2142138..2142143,2142156..2142158,2142171..2142176)) /locus_tag="Deba_1928" /note="catalytic residues [active]" /db_xref="CDD:173833" misc_feature complement(order(2141880..2141882,2141940..2141942, 2142138..2142143,2142156..2142158,2142171..2142176)) /locus_tag="Deba_1928" /note="aspartate-rich region 1; other site" /db_xref="CDD:173833" misc_feature complement(order(2141679..2141693,2141700..2141717, 2141733..2141738,2142108..2142152)) /locus_tag="Deba_1928" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature complement(order(2141685..2141687,2141700..2141702, 2141715..2141717,2141745..2141747,2141754..2141759)) /locus_tag="Deba_1928" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene complement(2142425..2142673) /locus_tag="Deba_1929" /db_xref="GeneID:9494397" CDS complement(2142425..2142673) /locus_tag="Deba_1929" /EC_number="3.1.11.6" /note="InterPro IPR003761; KEGG: bba:Bd0198 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; SPTR: Q6MR96 Exodeoxyribonuclease 7 small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII, small subunit" /protein_id="YP_003807888.1" /db_xref="GI:302343359" /db_xref="GeneID:9494397" /translation="MAGAKKQQGFEASLGRLEEIVQSLENDDLTLEQSLKLFEEGVAL AEACGKRLDEAEQKVVLLARGDGVPRQTPLEPGEAAEE" misc_feature complement(2142437..2142673) /locus_tag="Deba_1929" /note="Exonuclease VII small subunit; Region: Exonuc_VII_S; cl00750" /db_xref="CDD:193926" gene complement(2142673..2143548) /locus_tag="Deba_1930" /db_xref="GeneID:9494398" CDS complement(2142673..2143548) /locus_tag="Deba_1930" /note="COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011055; KEGG: dvm:DvMF_0123 peptidase M23; PFAM: peptidase M23; SPTR: B8DNM7 peptidase M23; PFAM: peptidase family M23" /codon_start=1 /transl_table=11 /product="peptidase M23" /protein_id="YP_003807889.1" /db_xref="GI:302343360" /db_xref="GeneID:9494398" /translation="MVNRLALSLMLAFFVLCPGPAAAQMIHIWPTPLGKGQPAMVTAC LRGSPARAEVEFLGRKTPLQRGARGCYYAVVAAPLDAPLGRQTLRVFADGRQAAAALI TVKAMDYGVRRITVHKKFDDLSPAELEKYKKDQAKIAAAYSRRTPERYWSGPFIRPVP GVVVSKFGRRSVVNGVEKLPHSGVDLRAATGEPVKATAAGVVAVALDHYFGGQTIIID HGQGVVSRYLHLSAMLVKEGQRVAKGQIIAEVGATGRVTGPHLDFGVGVGGARIDPLA WLELSRRYAAALEAN" misc_feature complement(2142727..2143011) /locus_tag="Deba_1930" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene complement(2143542..2144888) /locus_tag="Deba_1931" /db_xref="GeneID:9494399" CDS complement(2143542..2144888) /locus_tag="Deba_1931" /note="COGs: COG1570 Exonuclease VII large subunit; InterPro IPR004365:IPR020579:IPR003753; KEGG: avn:Avin_39770 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; SPTR: C1DE08 Exodeoxyribonuclease 7 large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII, large subunit" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII, large subunit" /protein_id="YP_003807890.1" /db_xref="GI:302343361" /db_xref="GeneID:9494399" /translation="MEGLSLFTPRQVLGVSELLNRLKKQAEASFDFVWVEGEVSGLRR PASGHCYFSLKDDGGVLRAVMFRHQAGLLRFRLEDGQRVLCQGRLSVYVARGEVQLVV DTAEPLGAGALALAFEQLKRRLAAQGVFDAERKKPLPELPRRVAVVTSPTGAALRDFL KVVERRGQRLEVAVYPVQVQGEAAAGQMVVALAELAAWGWPEVIVLTRGGGSPEDLWA YNDEALALAIAACPLPVVSAVGHEIDVTIADLAADLRAPTPTAAAELLLAGREELTLR LKAARQALAMAMARSLARRRVDLRHLRRAMADPRRRLADHRQRLDDVSARLLMAQRTA LAGRQARLHRLVGRLAQARPERRLTQAQGRLEGLRGRLWAAMIARLRGRRAAAELLRG RLRALGPLAVLGRGYALVFDEKGRLLREAAHTAPGRAIEVKLQHGALRAVVEEVVW" misc_feature complement(2143557..2144867) /locus_tag="Deba_1931" /note="exodeoxyribonuclease VII large subunit; Reviewed; Region: xseA; PRK00286" /db_xref="CDD:178962" misc_feature complement(2144568..2144795) /locus_tag="Deba_1931" /note="ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-...; Region: ExoVII_LU_OBF; cd04489" /db_xref="CDD:72961" misc_feature complement(order(2144571..2144573,2144631..2144633, 2144637..2144639,2144643..2144645,2144787..2144789)) /locus_tag="Deba_1931" /note="generic binding surface II; other site" /db_xref="CDD:72961" misc_feature complement(order(2144586..2144594,2144619..2144627, 2144646..2144648,2144691..2144693,2144697..2144705, 2144721..2144723,2144727..2144738,2144766..2144774)) /locus_tag="Deba_1931" /note="generic binding surface I; other site" /db_xref="CDD:72961" gene complement(2144920..2145501) /locus_tag="Deba_1932" /db_xref="GeneID:9494400" CDS complement(2144920..2145501) /locus_tag="Deba_1932" /note="InterPro IPR007730; KEGG: pla:Plav_0031 sporulation domain-containing protein; PFAM: Sporulation domain protein; SPTR: A7HP21 Sporulation domain protein; PFAM: Sporulation related domain" /codon_start=1 /transl_table=11 /product="Sporulation domain protein" /protein_id="YP_003807891.1" /db_xref="GI:302343362" /db_xref="GeneID:9494400" /translation="MNSFRPLCLAALALGALWPTGAWGLSVDQVLKLRQAGVGDATIG VMLDNELAAARQGASGRYEVGGAAGKGLIIYRAASPQGQVDYPVEVVEAGASMEQVGV ALNAPRRAAKPAAGGGLTLQLRSYRQEDEAREYMAVLAKKGVQAQTARVDLGERGVWH RVFVTGLADKAAAQALGASLQKQGLAESYWIGQ" gene complement(2145568..2146869) /locus_tag="Deba_1933" /db_xref="GeneID:9494401" CDS complement(2145568..2146869) /locus_tag="Deba_1933" /note="COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR010280:IPR002792:IPR016027:IPR001566; KEGG: ppd:Ppro_1783 RNA methyltransferase; PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; SPTR: A1APX5 RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: TRAM domain; tRNA (uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, TrmA family" /protein_id="YP_003807892.1" /db_xref="GI:302343363" /db_xref="GeneID:9494401" /translation="MMDQQSDTQELLLKIEQLSAGGRGLARLDDGKVVFVAGALAGET VAARIVNDKKDFAEAVCRRVFEPSPRRVQARCPAYGACGGCDLMHLDYAGQLEAKAQW LDRALGRLPGMPPAVAWPSPRQWGWRNRVRFQVRGNRIGFFQRGGHYLEPLRDCPVAH PAISRFLAALAPEVTSGQHRSLAWVEVLANDDDGPFATMGVGAGAKLNNAMKRGLRLA ATQAGAKMTRLCRGENLEQWDPGPDNGLLYHSDGQLQLRAYPGLFCQVNLGLNQRLMG LVLEAAGQLPPGEALDLFAGGGNFALPLAQAGWQVCAVEAQPQAAQVMLWQARRAELD ERLEILWTQAADAVGRLTSSGRRFDLVVLDPPRAGAKGLMDQVAALAPKRVAYVSCHP AALARDAKELLGYGYAPVALHALDMFPQTSHVEALLILDRP" misc_feature complement(2145592..2146845) /locus_tag="Deba_1933" /note="SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]; Region: TrmA; COG2265" /db_xref="CDD:32446" misc_feature complement(2146693..2146845) /locus_tag="Deba_1933" /note="TRAM domain; Region: TRAM; cl01282" /db_xref="CDD:120537" misc_feature complement(2145574..2146632) /locus_tag="Deba_1933" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 2147085..2147930 /locus_tag="Deba_1934" /db_xref="GeneID:9494402" CDS 2147085..2147930 /locus_tag="Deba_1934" /note="COGs: COG1639 signal transduction protein; InterPro IPR003607:IPR013976:IPR006675; KEGG: aoe:Clos_2504 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: A8MJQ4 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_003807893.1" /db_xref="GI:302343364" /db_xref="GeneID:9494402" /translation="MTNKYIKGLRYVPSLPTVLAKIMALLDDEKTSVADLEAVIVRDQ ALTSKVLSIANSAYWGLRHEVVSIERATVLLGFEEISNICLGAGLIGFLHPSIFRNRE GAEQLWLHTLAVAEAAQAISREMAFIEAGSAFTAGLLHDLGKAVLAAFHPGDVEDVLR LMQREKLSFRQAEMANECDHAAIGGELAQHWGIPASLGQVMAMHHEPPPDAQLEPLVA AVHAADYLVRDMGIGDSGNPDKPTVEARVLDWLGLGDSLLRSIKRDLAWRRPAIEDLW KELIS" misc_feature 2147121..2147705 /locus_tag="Deba_1934" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(2147940..2148275) /locus_tag="Deba_1935" /db_xref="GeneID:9494403" CDS complement(2147940..2148275) /locus_tag="Deba_1935" /note="KEGG: gsu:GSU3079 hypothetical protein; SPTR: Q748C8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807894.1" /db_xref="GI:302343365" /db_xref="GeneID:9494403" /translation="MITRNGDVVLIHHKNEPMVYARVEDIVADVKPGWWQITLLFLTV PRSTVTWILREGYIDGDEFTMNGEAMRLERLPRSEARKAPEPEPSPPGAEGGGEKVVS LAARRRDGR" gene complement(2148272..2149213) /locus_tag="Deba_1936" /db_xref="GeneID:9494404" CDS complement(2148272..2149213) /locus_tag="Deba_1936" /note="COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: dvm:DvMF_2935 PfkB domain protein; PFAM: PfkB domain protein; SPTR: B8DSB7 PfkB domain protein; PFAM: pfkB family carbohydrate kinase" /codon_start=1 /transl_table=11 /product="PfkB domain protein" /protein_id="YP_003807895.1" /db_xref="GI:302343366" /db_xref="GeneID:9494404" /translation="MQIFISGSLAYDRIMNFGGRFSDHILPDKIHVLNVSFNVNGLKE HLGGTAGNIAYGLAQLGQRPSVLGCLGRDGQRYLDWLDAHGIETGFIRTVDEEYTAGA FITTDMADNQITGFNPGAMNHSCRFDAQRLDPAEAVVIISPGNLEDMTTLPEQCRRRG ARFIFDPGQALNILDGEPLAKAIEGAMMFISNDYELEMTLRKTGLSLDELRAKVGCIV STKAEHGSVVLNGSVRASIPAAPTDQVNDPTGAGDAYRAGLLAAMAKGRDLVEACRWG AALASFAVSCFGTQEYTVDLAEFQRRLKAIGGGEADL" misc_feature complement(2148344..2149207) /locus_tag="Deba_1936" /note="Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time; Region: ribokinase_group_A; cd01942" /db_xref="CDD:29364" misc_feature complement(2148296..2149186) /locus_tag="Deba_1936" /note="Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]; Region: FruK; COG1105" /db_xref="CDD:31302" misc_feature complement(order(2148455..2148457,2148464..2148466, 2149058..2149060)) /locus_tag="Deba_1936" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29364" misc_feature complement(order(2148374..2148376,2148383..2148385, 2148449..2148451,2148458..2148463,2148470..2148472, 2148554..2148556,2148638..2148640)) /locus_tag="Deba_1936" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29364" gene 2149384..2149959 /locus_tag="Deba_1937" /db_xref="GeneID:9494405" CDS 2149384..2149959 /locus_tag="Deba_1937" /note="KEGG: mex:Mext_4302 hypothetical protein; SPTR: B6R8A8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807896.1" /db_xref="GI:302343367" /db_xref="GeneID:9494405" /translation="MKNALAFFLALAAALWAGGCPARDLNQEPAAISDQGAAPHEYMR ALGEADAAVAYIWEQMPFLINKALLISKPCQVYGDFDHRKSNVFSDNDPTLAYVEPLG FKYRQAEDGFFELEMAVDLLILDSQGKIVVLQDDYQRAEERSRYQLREVFMNVSLPLF GLPPDKYHVSIKVRDLIGKGSATAKLVVILR" gene complement(2150049..2151407) /locus_tag="Deba_1938" /db_xref="GeneID:9494406" CDS complement(2150049..2151407) /locus_tag="Deba_1938" /note="COGs: COG2848 conserved hypothetical protein; InterPro IPR007841; KEGG: adg:Adeg_1269 protein of unknown function DUF711; PFAM: protein of unknown function DUF711; SPTR: C9R7V0 Putative uncharacterized protein; PFAM: Uncharacterized ACR (DUF711)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807897.1" /db_xref="GI:302343368" /db_xref="GeneID:9494406" /translation="MAIGLQEALETAGMILFDNFDIRAVTLGVNLKDLIDRDIERMSA AVAGRLADMGRRLVDEASRISDSFGVPIVNKRLSITPAAWLLEACPHDEAPVVLAQAI DRGACRAGVDFVGGFGALVEKGATKADRRLMEALPQALGSTQRLCGFLNLASTSAGMN MDAIARLGHILKAMAAAAPLGLACAKFVAFANAPSDNPFMAGAFHGAQEGDTALNVGI SGPGVVRAVVEKHPDCDLTMLSEVIRRTVFKITRAGELVGRELAKRLGVNFGVVDISL APTTAVGDSVGQILESMGLEKVGAPGTTAALALLIDAVKRGGAMASGNVGGLSGTFIP VSEDLAMIDAVECGALGLEKLEAMTAVCSVGLDMFAVPGDVEPATLSAIIADELSIGV ANNKTTGVRMIPAPGTKPGDSVDFGGLLGRAPVMAVNRFSGAKFIGRGGRMPAPITAL RN" misc_feature complement(2150190..2151389) /locus_tag="Deba_1938" /note="Uncharacterized proteins with similarity to Ribonucleotide reductase and Pyruvate formate lyase; Region: RNR_PFL_like_DUF711; cd08025" /db_xref="CDD:153090" gene complement(2151417..2151695) /locus_tag="Deba_1939" /db_xref="GeneID:9494407" CDS complement(2151417..2151695) /locus_tag="Deba_1939" /note="COGs: COG3830 ACT domain-containing protein; InterPro IPR002912; KEGG: mvu:Metvu_1156 ACT domain-containing protein; PFAM: amino acid-binding ACT domain protein; SPTR: C9RHG2 ACT domain-containing protein; PFAM: ACT domain" /codon_start=1 /transl_table=11 /product="ACT domain-containing protein" /protein_id="YP_003807898.1" /db_xref="GI:302343369" /db_xref="GeneID:9494407" /translation="MKNERVFLVVMGGDQKGIIARVSGLLFEQDCNIVDVQQKVMDGT FVMTMLVDIGDSKLGPSGLRGALEQLGERLGLTIMLHSEAVIKAMHRV" misc_feature complement(2151420..2151683) /locus_tag="Deba_1939" /note="ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141" /db_xref="CDD:195804" gene complement(2151692..2152390) /locus_tag="Deba_1940" /db_xref="GeneID:9494408" CDS complement(2151692..2152390) /locus_tag="Deba_1940" /EC_number="4.2.99.18" /note="COGs: COG0177 EndoIII-related endonuclease; InterProIPR004035:IPR004036:IPR003265:IPR003651:IPR 011257:IPR005759; KEGG: ace:Acel_1993 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: A0LWF5 endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III" /codon_start=1 /transl_table=11 /product="endonuclease III" /protein_id="YP_003807899.1" /db_xref="GI:302343370" /db_xref="GeneID:9494408" /translation="MAARGADKAWSRPQPQRVAAILAELDKLYPAAQCALRFADAWQL LVATILSAQCTDERVNMVTPEFFARWPGPAQAAAADQAQVEEVIRSTGFFRNKAKAII GAARAVLERHGGQVPAAMDDLTGLPGVGRKTANVVLGNAFGVPGITVDTHVKRLAGLL GLSDQADPDKIEQQLMEIIPEERWTLFSHQMILHGRQVCPARKPRCGQCALAPHCPHG QSVLAGPEGQRRKP" misc_feature complement(2151722..2152351) /locus_tag="Deba_1940" /note="Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]; Region: Nth; COG0177" /db_xref="CDD:30526" misc_feature complement(2151806..2152267) /locus_tag="Deba_1940" /note="endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056" /db_xref="CDD:28938" misc_feature complement(order(2152100..2152102,2152217..2152219, 2152226..2152234)) /locus_tag="Deba_1940" /note="minor groove reading motif; other site" /db_xref="CDD:28938" misc_feature complement(2151992..2152015) /locus_tag="Deba_1940" /note="helix-hairpin-helix signature motif; other site" /db_xref="CDD:28938" misc_feature complement(order(2151815..2151817,2151827..2151829, 2151983..2151985)) /locus_tag="Deba_1940" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:28938" misc_feature complement(2151941..2151943) /locus_tag="Deba_1940" /note="active site" /db_xref="CDD:28938" gene complement(2152393..2153007) /locus_tag="Deba_1941" /db_xref="GeneID:9494409" CDS complement(2152393..2153007) /locus_tag="Deba_1941" /EC_number="5.2.1.8" /note="COGs: COG0652 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR015891; KEGG: dma:DMR_18750 peptidyl-prolyl cis-trans isomerase B; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; PRIAM: peptidylprolyl isomerase; SPTR: C4XQK1 peptidyl-prolyl cis-trans isomerase B; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="YP_003807900.1" /db_xref="GI:302343371" /db_xref="GeneID:9494409" /translation="MRRNSLARRLGLAILAAVVAAFCISAGVASAQVRQGENPMVKFT TSMGDIVIELYPDKAPITVQNFLNYVNKGHYAGTVFHRVVPGFVIQGGGLRADMGMKA TDKPIKNEADNGLKNTHYSLSMARTQIPDSATCQFFINLADNEFLDHTAKTPDGWGYA VFGKVVEGQDVVDKIGAVKTGNKGHHSDVPLESVVIEKAEVLEK" misc_feature complement(2152411..2152881) /locus_tag="Deba_1941" /note="cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920" /db_xref="CDD:29391" misc_feature complement(order(2152531..2152533,2152567..2152572, 2152594..2152596,2152618..2152635,2152738..2152740, 2152744..2152749,2152756..2152758,2152762..2152764)) /locus_tag="Deba_1941" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29391" gene complement(2153100..2154857) /locus_tag="Deba_1942" /db_xref="GeneID:9494410" CDS complement(2153100..2154857) /locus_tag="Deba_1942" /note="COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004090:IPR003660:IPR004089:IPR013163; KEGG: gme:Gmet_1078 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Q39WQ6 methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_003807901.1" /db_xref="GI:302343372" /db_xref="GeneID:9494410" /translation="MSFSIGKSMGAKIVTLALGAAMVMALTYVWVIPKVSDSIYDEKR LKTRHVVETAVSVAEYFVKQEADGKLTRDQAQKMTLDVLRELRYETNDYFWINDLDGV MLMHPFSKDLIGKPTAGIKDADGKAFFAEMVSLAKSAGKGFVDYKWTKPGADKAVDKV SYIQAIPAWQWLVGSGIYVDDVEEQIGHLTMIIVGVVAIIFALTVLASLMLARSVTTP LKKTVAMIKDIAQGQGDLTARMEVMSKDEIGVLAAEFNRFVEKLHDIIVQVRQSTDVV SQSTMEISQGNQDLSERVQQQASAIEETASAMEEMTSSVKQEADHARQANQMAQKTAH MAQEGGQVVQRTIEAMAAVSESSKKISEIINVVNEIAFQTNLLALNAAVEAARAGEAG RGFAVVAGEVRNLAGRSATAAKEIQGLITDSVVKVEQGNQLVTESGRLLTEIIANVQN VADIAGEIDAAIQEQAMGIEEVNKAVAQMDQGVQQNAALVEEAASASEEMASAADVMR QQMAGFKVNFEGQPLAAAKKKPTKPAPVAAARPMTHRPAAKPAAKPAAKAAPAKSAAK ASSSDDFFEGVELEGFEEF" misc_feature complement(2154468..2154743) /locus_tag="Deba_1942" /note="Cache domain; Region: Cache_2; pfam08269" /db_xref="CDD:149365" misc_feature complement(2154066..2154281) /locus_tag="Deba_1942" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(2153307..2153891) /locus_tag="Deba_1942" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(2155033..2155695) /locus_tag="Deba_1943" /db_xref="GeneID:9494411" CDS complement(2155033..2155695) /locus_tag="Deba_1943" /note="COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dol:Dole_2835 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: A8ZY11 Putative uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807902.1" /db_xref="GI:302343373" /db_xref="GeneID:9494411" /translation="MKERGENQYVVDALSAKESWRMFRIMSEFVDGIDTLGEIPKGVS VFGSARSKPGTPEYRQAEEMGRLLVEAGFSVITGGGGGVMEAANKGASEAGGHSVGLN IELPFEQKPNPYANVRLDFRYFFVRKVMFVKHSVAYVVMPGGFGTLDELAEALTLIQT HRIRPFPVFLMGSQYWGGLVQWMDTVLKGHGMISPEDMDLLHVVDSPAAVIRQISQMV IL" misc_feature complement(2155048..2155569) /locus_tag="Deba_1943" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene 2155868..2157505 /locus_tag="Deba_1944" /db_xref="GeneID:9494412" CDS 2155868..2157505 /locus_tag="Deba_1944" /note="COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: dal:Dalk_2789 RNA-metabolising metallo-beta-lactamase; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: B8FKV9 RNA-metabolising metallo-beta-lactamase; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; beta-Casp domain" /codon_start=1 /transl_table=11 /product="RNA-metabolising metallo-beta-lactamase" /protein_id="YP_003807903.1" /db_xref="GI:302343374" /db_xref="GeneID:9494412" /translation="MQITCLGATRTVTGSSFLVELDDQTCFLVDCGLFQGGRQIEQRN WDISDHRPQDIKAIYITHAHIDHSGLVPRLTRQGYNGPIYATKATSELLKILWLDSAH IQQMEAQWQSRKNKRVGRKDIEPLYETVDAEAAIALIRPVEMNAPLELIPGVTSTFVS AGHILGAASLHLSLQAADGAHNVGFSGDVGRQKQLIVPDPEIMPRVDTLFMETTYGQR LHKSIADSEKELMDVITQAFKEGGRVVIPSFAVERTQELIYVMAQAYRDGKWPGEMPV YLDSPLAIKATQIFRDHPEFFDDETKAILDSGQRPLNFPFLTPTPSTQESQAINDKKG PMVIIAGNGMSTAGRIKHHLKHNLWRSDCHVVIVGFQAQGSTGRQLVDGADTVKIFRE DVEVRAKIHTIGGFSAHADQAELLTWLEPQIHDGLCVNLIHGEELQSLGFAKVAQKRF PNAHFHVPKWKEVIRVTPFAEVAPLPVEEFPEPAARLAMPQRRAMVAEVRQLRDRLDE VMLEILTGERDLDQRQIEALRQVVEGAEAALAQWEAA" misc_feature 2155868..2157244 /locus_tag="Deba_1944" /note="Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]; Region: YSH1; COG1236" /db_xref="CDD:31429" misc_feature 2155895..>2156437 /locus_tag="Deba_1944" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" misc_feature 2156627..2157007 /locus_tag="Deba_1944" /note="Beta-Casp domain; Region: Beta-Casp; pfam10996" /db_xref="CDD:192690" misc_feature 2157041..2157175 /locus_tag="Deba_1944" /note="RNA-metabolising metallo-beta-lactamase; Region: RMMBL; pfam07521" /db_xref="CDD:191768" gene 2157509..2160013 /locus_tag="Deba_1945" /db_xref="GeneID:9494413" CDS 2157509..2160013 /locus_tag="Deba_1945" /note="COGs: COG1032 Fe-S oxidoreductase; InterProIPR006058:IPR006638:IPR007197:IPR018768:IPR 013785; KEGG: pca:Pcar_2585 Fe-S oxidoreductase; PFAM: Protein of unknown function DUF2344; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q3A1D4 Fe-S oxidoreductase; PFAM: Uncharacterized protein conserved in bacteria (DUF2344); radical SAM superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807904.1" /db_xref="GI:302343375" /db_xref="GeneID:9494413" /translation="MQRDQIISAVEKPGRYTGGEAFSVIKDHGQVKLTMALAFPEVYE IAMSHQGLKVLYDQLAGRPDVAAERVFCPWTDLMDLLEQTGQAPWSLESGAALGSFDV IGFSLQYELTYANLLHMLRLAGVPLRRDRRGPEHPLVIAGGPCAVNPEPLADFLDIVA VGDGERLIHQICDLVIAAKEQSWPRQELYRRAAAIEGLYVPALYEPIYQDGRLVTVRA VDAAAPARVKRRIEPDLGAFAPPQRPVLPAVKPVHDRLGVEIARGCTRGCRFCQAGFI YRPVRERPLGQALNAALEGLACTGMEELALLSLSAGDYSAIEPLARALMDACEPLKVS LSLPSLRVDSLSQELIAQIKRVRKTGFTLAPEAGSEHMRRRINKDLTEEQILDTARLV YGLGWNLIKLYFMIGLPGESDSDVEAIGQLARQVAQQALAAGRGRGKKPLVHASIGIF VPKPHTPFQWEGQLDLAQAEQRLRLAKASLGDSRLRAKWNDARLSVLEGVLARGDRRL SRVLELVVAAGCRFDGWSEHLNFTAWLAAMEDAGLTLEEYLRPRGLDEALPWDHIDVG VGRDYLLAEREKAVTGQATADCRGGKCGACGVCDFKEIRPRLTDEKLPAPVGPAAAPE GEERFKYRYRLEKTGPARFLGHLEMMTQLARAFRRSGAPLAHSRGFHPQAQVKACSAL PLGVESLVEVIEITTLRPIDPVALAERVNQTMPQGMRLADGRAARPGDNLAEPDLVGY QIDPPRPLDPARLSAFAQAPEFFYARITPKGRRDIDFKATIRKLELDENRLLLEVGRQ GGRPKPAEVLEAVFGLEKNLACRARALKTLAKWGDN" misc_feature 2157518..2159314 /locus_tag="Deba_1945" /note="radical SAM family uncharacterized protein; Region: rSAM_fuse_unch; TIGR03960" /db_xref="CDD:188475" misc_feature 2158280..>2158765 /locus_tag="Deba_1945" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(2158298..2158300,2158304..2158306,2158310..2158312, 2158316..2158324,2158427..2158429,2158433..2158438, 2158514..2158519,2158598..2158600,2158721..2158723) /locus_tag="Deba_1945" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature 2159396..2159989 /locus_tag="Deba_1945" /note="radical SAM-linked protein; Region: sam_1_link_chp; TIGR03936" /db_xref="CDD:188451" misc_feature 2159396..2159920 /locus_tag="Deba_1945" /note="Uncharacterized protein conserved in bacteria (DUF2344); Region: DUF2344; cl02090" /db_xref="CDD:154738" gene 2160015..2161532 /locus_tag="Deba_1946" /db_xref="GeneID:9494414" CDS 2160015..2161532 /locus_tag="Deba_1946" /note="COGs: COG1530 ribonuclease G and E; InterPro IPR019307:IPR016027:IPR012340:IPR004659; KEGG: sfu:Sfum_1609 ribonuclease; PFAM: RNA-binding protein AU-1/ribonuclease E/G; SPTR: A0LIP4 RNAse G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family" /codon_start=1 /transl_table=11 /product="ribonuclease, Rne/Rng family" /protein_id="YP_003807905.1" /db_xref="GI:302343376" /db_xref="GeneID:9494414" /translation="MSATLLINARSYETRVALLENGHCVEVYTERHKHGSLAGNIYLG RVARVLPGMQAAFVDIGLPKAAFLYVGDVRPDVSFDEYLAPGAYPDEPEDVAQGGVAA EQGQVRIEQMLQQGQELMVQVAKEPLGSKGARITTHITLPGHNLVLMPTLNHIGVSRR IADEDERNRLRQIIEQMAPGGYGFIARTASENQEPDKLRAEMDFLVSLWESILLRRGR AMVPNMLHRDLSVSLRAVRDLCTREVDHMIIDCEQEYYEVVEFVSTFLPRLVPCVEFY RGREPIFDAYGVEHELTRALGRKVWLKSGGYVVIEKTEALTTIDVNTGRYVGGHNLEE TILKTNLEAVKEIACQIRLRDLGGLIVIDFIDMEKEANRLRVVESLKDALRGDRSKTN VLAMSPLGLVEMTRKRVRQSLGESLTEPCAYCHGSGKIKDASTVCYELFRELERELPH LEAAVVHVAVHPSVAEMMLQEERYVLEELESNYGVTIQVEADLTLHREHYAIRAE" misc_feature 2160015..2161514 /locus_tag="Deba_1946" /note="ribonuclease G; Provisional; Region: PRK11712" /db_xref="CDD:183285" misc_feature 2160111..2160443 /locus_tag="Deba_1946" /note="S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453" /db_xref="CDD:88419" misc_feature order(2160141..2160143,2160354..2160356,2160366..2160368) /locus_tag="Deba_1946" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:88419" misc_feature order(2160213..2160215,2160387..2160389,2160396..2160398, 2160405..2160410,2160438..2160440) /locus_tag="Deba_1946" /note="oligonucleotide binding site [chemical binding]; other site" /db_xref="CDD:88419" gene 2161683..2162834 /locus_tag="Deba_1947" /db_xref="GeneID:9494415" CDS 2161683..2162834 /locus_tag="Deba_1947" /EC_number="1.3.99.2" /note="COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006089:IPR006092:IPR006091:IPR006090:IPR 009100:IPR009075:IPR013786:IPR013764; KEGG: dat:HRM2_10010 Acd3; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C0QL27 Acd3; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_003807906.1" /db_xref="GI:302343377" /db_xref="GeneID:9494415" /translation="MDFQLSMEQDILRKSVRDFAEKEIAPQAQRLDADEEFSMETFRA MGELGLFGMIVDEAYGGQGMDYISYIIAVEEIARIDGSHAATVAAGNSLGIGPIFYYG SEEQKHKYLPELCAGRALWGFGLTEPNAGSDAGGARTTAVLDGDSWLINGSKIFITNA STPASLGVTVMARTGVFPDGRPELSCILVENGTPGFEARPMHGKMMWRASNTSELYFE DCRVPATNILGQRGKGFHQMLATLDAGRLSIGAMGVGGAQGAYELALKYAKQREQFGR PIAAFQVNAFKLADMAMEIEAARLLLYKACWQKDNHQSFSKLAAMAKLYASEVMGRVA TEAVQLHGGYGLMREYDVERFFRDQKLLTIGEGTSEVQRLVIARLIGAI" misc_feature 2161683..2162825 /locus_tag="Deba_1947" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 2161704..2162822 /locus_tag="Deba_1947" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(2161959..2161961,2162049..2162051,2162055..2162057, 2162148..2162150,2162154..2162156,2162772..2162780, 2162784..2162786,2162790..2162792) /locus_tag="Deba_1947" /note="active site" /db_xref="CDD:173838" gene 2162998..2164074 /locus_tag="Deba_1948" /db_xref="GeneID:9494416" CDS 2162998..2164074 /locus_tag="Deba_1948" /note="COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dal:Dalk_2344 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: B8FAV1 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit" /codon_start=1 /transl_table=11 /product="efflux transporter, RND family, MFP subunit" /protein_id="YP_003807907.1" /db_xref="GI:302343378" /db_xref="GeneID:9494416" /translation="MISPKNLKRIGVIGGAIALAALIGHSGGLFNFSRIAPGQEPSPP GEMVRPVRTITAQKTQWPECFEAVGAVRPRTETKVEAQISGKVLKVEARPGAMVQQGQ LLVLLDAQQYDARLGQARQDLNAARAAAVLARAEHGRLERLFQRGAAPKRDLDRAVEN LARAQAMVQRAEDQVEEARLAQSYASVKAPDTGRITERLIEPGDIALPGRTLFLLETG GAPRLEALVREGLMGRVRLGQELEVVIPALDKAVLGRVEEIVPAVDPRTRTFLVKVVL PPTQGLYSGMFGRLRIPVGQRPVVTVESAAIGRVGQLEMVRVKDGDNWRGVYVTTGRA RDGQIEVLSGLAGGETLAVEGDRP" misc_feature 2163148..2164062 /locus_tag="Deba_1948" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 2164071..2167322 /locus_tag="Deba_1949" /db_xref="GeneID:9494417" CDS 2164071..2167322 /locus_tag="Deba_1949" /note="COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dal:Dalk_2343 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: B8FAV0 Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="YP_003807908.1" /db_xref="GI:302343379" /db_xref="GeneID:9494417" /translation="MSERANSGGTGLIEKIVRPFLQSQLAVLLIIAALCLGAAAIWAT PREEEPQIVVPLADVFVQAPGASAEEVEKLVATPLERLLWQIDGVEHVYSTSMPGQAV VTVRFFVGQPREASLVKLHNKIMMNQDAAPALVKGWVVKPVEIDDAPIVTIALHSNKL DDHQLRRVAEEVMARLAETPDISRTAVIGGRPREIRVELDPKRLAGFQVTPEEAQAAL AGADASLKAGRFNQADQALELTSDSFLTSPHDVAELVVGVFDNRPVYLRDVATITDGP TEAVSYTRIGFGARALRQAGRAPDDWSRPAVTIELAKKKGANAVSVADEIVARLDELR GAVLPGDVEATITRNYGHTAQAKSDELIESLIFAVLTVVALLAFTMGWREALVVAVAV PLSFALALFVNYLFGYTINRVTMFALILSLGLVVDDPITNVDNIQRHILMGRQRPLEA TLAAVREVLPPVIMSTLAIIVCFTPMFFITGMMGPYMAPMAINVPLTVTFSTLWALTI VPWLSYKLLRGRSPLAGGAPIAAGAPAETTPEWVRRGYRALIEPFLDRRGLRWLLLAV ILALLAGSLSLVGLRLVPLKMLPFDNKNEFQIVLDFPEGTTLERADRVCRDFEAFLAT VPEVVDFSTFVGLSSPIDFNGLVRHYYLRQGGEAADIRVNLLPKDRRQQQSHEIVLRL RPALTALARRAGVNMKLVETPPGPPVLSTIVAEVRGQPGLTHDQLIAAAKKLSAMLAK EDMIVDIDDSSQQPRQRIDFVVDKEKAALHGVSAQRIIQTMRLAVSGSWPAAVHLPNE RQQLMIRLTLPRPARSSMAELAETPVKSAGGQVIPLGELGVFQQLPAEQPINHKDLGR VVYVYAEAAGRSPATAILDMQSRLDAEPLGPGVSVEWAGEGEWQITLRVFRDLGLAFG AALVGIYILLVLQTGSFALPVLLMVAIPLTILGIMPGFWLLNLVGAAPVGPYENPVFF TATSMIGMIALGGIVIRNSLVLIEFIQQAMAERGLDLREAILRCGAVRFRPIVLTAAT TALGAWPITLDPIFSGLAWALIFGLLASTAFTLVVVPVVYYLTQKGRQGATQR" misc_feature 2164203..2167295 /locus_tag="Deba_1949" /note="Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841" /db_xref="CDD:31183" misc_feature <2165142..2165579 /locus_tag="Deba_1949" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" gene complement(2167406..2168092) /locus_tag="Deba_1950" /db_xref="GeneID:9494418" CDS complement(2167406..2168092) /locus_tag="Deba_1950" /note="InterPro IPR001387:IPR013096:IPR011051:IPR014710; KEGG: drt:Dret_1668 transcriptional regulator, XRE family; PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C8X3F5 Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="YP_003807909.1" /db_xref="GI:302343380" /db_xref="GeneID:9494418" /translation="MDPKDNRESAVIDEQCAPSRAGGQEEFLRGVEKVAGLGVSQVDD APLARRIQALRQAGGLDLADVSQRTGLSEGELTAIEEGRLSPPLGVLMKLAKALGSEM GTLIAGGAQAAHAVVRASQRQPISRRAGDADTSYGYSYEHLAAAKANRAMEPFVVTLH PHAEAKPASQHDGQEFIFVLEGSMEAVVGEVREVLEPGDSIYYDSGAPHYVRALGDQP ARILAVLTSK" misc_feature complement(2167415..2167969) /locus_tag="Deba_1950" /note="DNA-binding transcriptional repressor PuuR; Provisional; Region: PRK09943" /db_xref="CDD:182158" misc_feature complement(2167778..2167951) /locus_tag="Deba_1950" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature complement(order(2167850..2167852,2167925..2167927, 2167937..2167939)) /locus_tag="Deba_1950" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(order(2167853..2167855,2167928..2167930)) /locus_tag="Deba_1950" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature complement(order(2167847..2167852,2167862..2167864, 2167871..2167873,2167904..2167909)) /locus_tag="Deba_1950" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(2167421..2167630) /locus_tag="Deba_1950" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene complement(2168150..2168707) /locus_tag="Deba_1951" /db_xref="GeneID:9494419" CDS complement(2168150..2168707) /locus_tag="Deba_1951" /note="COGs: COG1014 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit gamma; InterPro IPR019752:IPR002869; KEGG: drt:Dret_0089 pyruvate/ketoisovalerate oxidoreductase; PFAM: pyruvate/ketoisovalerate oxidoreductase; SPTR: C0GP42 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase" /codon_start=1 /transl_table=11 /product="pyruvate/ketoisovalerate oxidoreductase" /protein_id="YP_003807910.1" /db_xref="GI:302343381" /db_xref="GeneID:9494419" /translation="MYFDCIIAGFGGQGVMLMGNMLAYAAMEAGKHVTYMPVYGVEMR GGTANCTVVVSERPVGSPIIHEPLTAAVMNRPSAEKFGPRVKKQGHLLVNSSLVEEEH VSSRAKNVTFVPTMELAKEVGNPRLGNMVMLGALVQVSKVLEVRDVIKALPKALDPRY HGMIPINTDALKRGAGFMLETLGKK" misc_feature complement(2168165..2168707) /locus_tag="Deba_1951" /note="Pyruvate ferredoxin/flavodoxin oxidoreductase; Region: POR; cl00546" /db_xref="CDD:193862" misc_feature complement(2168177..2168689) /locus_tag="Deba_1951" /note="2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated; Region: PRK08537" /db_xref="CDD:181462" gene complement(2168725..2169483) /locus_tag="Deba_1952" /db_xref="GeneID:9494420" CDS complement(2168725..2169483) /locus_tag="Deba_1952" /note="COGs: COG1013 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit beta; InterPro IPR011766; KEGG: gur:Gura_2238 thiamine pyrophosphate binding domain-containing protein; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; SPTR: A5G3Q3 Thiamine pyrophosphate enzyme domain protein TPP-binding; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain" /codon_start=1 /transl_table=11 /product="thiamine pyrophosphate protein domain protein TPP-binding protein" /protein_id="YP_003807911.1" /db_xref="GI:302343382" /db_xref="GeneID:9494420" /translation="MSEAALQQVFDRPQSLKDVATHFCPGCHHGVIHRLVAEQLDAFG LRGKTIGVASVGCSVFLYDYFDVDVVEAPHGRAAAVATGVKRARPENFVFTYQGDGDL AAIGTAEIVHAANRGENICVVFVNNAVFGMTGGQMAPTTLEGQVTTTSPYGRSAADAG LPIRMSEMLATLEGAAFVARVAVNNIKNLQQAKKALHRAFEYQVNRWGFSFVEFLSAC PTNWKMTPQQANKRVGEEMADYFPLAVFKDRQAL" misc_feature complement(2168821..2169417) /locus_tag="Deba_1952" /note="Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR...; Region: TPP_OGFOR; cd03375" /db_xref="CDD:73355" misc_feature complement(order(2169097..2169099,2169103..2169105, 2169181..2169192,2169262..2169264)) /locus_tag="Deba_1952" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:73355" gene complement(2169484..2170542) /locus_tag="Deba_1953" /db_xref="GeneID:9494421" CDS complement(2169484..2170542) /locus_tag="Deba_1953" /note="COGs: COG0674 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit alpha; InterPro IPR002880:IPR009014:IPR015941; KEGG: gme:Gmet_1307 2-ketoisovalerate ferredoxin reductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SPTR: Q39W31 pyruvate flavodoxin/ferredoxin oxidoreductase-like; PFAM: domain" /codon_start=1 /transl_table=11 /product="pyruvate flavodoxin/ferredoxin oxidoreductase domain protein" /protein_id="YP_003807912.1" /db_xref="GI:302343383" /db_xref="GeneID:9494421" /translation="MARRVLIKGNEAIAMGAIEAGCRFYFGYPITPQNDIPEYMSATL PKVGGVFLQAESEVASINMLLGASATGARAMTSSSSPGISLKQEGISYLAGSEIPAVV VNMSRSGPGLGGIHPSQGDYFQATRGGGHGDYRTLVLAPSTAQENYDLTILAFDLADR YRNPVVILGDALIGQIKEPVELKPYHKKPPQKDWALTGNEGRPQRILKSLYLADGELT EQNWKLAKKYARMAKEVRFEEYLTDDAEMIVAAFGSVARILKTSIDILREKGRKIGLL RPITLYPFPSAAVRRAAEKSGHLMVVELNTGQMVEDVRLAVEGVAPVDFYGRPPGSIP TPDELAHEVDKAWKKRRA" misc_feature complement(2169496..2170542) /locus_tag="Deba_1953" /note="2-ketoisovalerate ferredoxin reductase; Validated; Region: PRK07119" /db_xref="CDD:180853" misc_feature complement(2170030..2170518) /locus_tag="Deba_1953" /note="Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034" /db_xref="CDD:132917" misc_feature complement(order(2170162..2170167,2170213..2170218, 2170255..2170257,2170267..2170269,2170276..2170278, 2170327..2170329,2170333..2170335,2170342..2170350, 2170354..2170359,2170378..2170389,2170429..2170431, 2170438..2170440,2170450..2170452,2170468..2170473)) /locus_tag="Deba_1953" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132917" misc_feature complement(order(2170267..2170269,2170276..2170278, 2170327..2170329,2170333..2170335,2170342..2170350, 2170354..2170359,2170378..2170389,2170429..2170434, 2170450..2170452,2170456..2170461,2170468..2170473)) /locus_tag="Deba_1953" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132917" misc_feature complement(order(2170372..2170374,2170456..2170458)) /locus_tag="Deba_1953" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132917" misc_feature complement(order(2170222..2170224,2170450..2170452)) /locus_tag="Deba_1953" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:132917" gene complement(2170544..2170765) /locus_tag="Deba_1954" /db_xref="GeneID:9494422" CDS complement(2170544..2170765) /locus_tag="Deba_1954" /note="InterPro IPR017900:IPR001450:IPR017896; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, subunit delta; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Q317N2 2-oxoglutarate ferredoxin oxidoreductase, subunit delta; PFAM: 4Fe-4S binding domain" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_003807913.1" /db_xref="GI:302343384" /db_xref="GeneID:9494422" /translation="MAKVTIISERCKGCGLCVEACPRGCLRLGQDINAKGYNYVEFSD DGDKPCTGCAFCAQLCPDVALRVFKQERG" misc_feature complement(2170565..>2170759) /locus_tag="Deba_1954" /note="RPB11 and RPB3 subunits of RNA polymerase; Region: RNAP_RPB11_RPB3; cl11409" /db_xref="CDD:196219" misc_feature complement(2170583..2170738) /locus_tag="Deba_1954" /note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838" /db_xref="CDD:193313" gene complement(2170774..2171703) /locus_tag="Deba_1955" /db_xref="GeneID:9494423" CDS complement(2170774..2171703) /locus_tag="Deba_1955" /note="COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterProIPR014043:IPR016035:IPR016036:IPR001227:IPR 004410; KEGG: dal:Dalk_3440 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; SPTR: B8FLI2 Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase" /codon_start=1 /transl_table=11 /product="malonyl CoA-acyl carrier protein transacylase" /protein_id="YP_003807914.1" /db_xref="GI:302343385" /db_xref="GeneID:9494423" /translation="MAKLAVVFPGQGSQFVGMGQAFFDSSAVARDIFAQAEAASGLPL AKLCFEGPMDELTRTVNLQPAVTAVNLACWAALVEAGARPDVVAGHSLGEYAALAAAG VISAGRCLELVSLRGRLMDRDAQANPGAMAAIMGATPQQAAELCAAVDGMVQPANYNT PQQTVITGAKDAVAVASAKAKEMGWKALPLKVSGAWHSPLMAQAAQDMARAIADTAFA EPACPVIPNASGAPAAAAEELRGHLTAQLTAPVRWVQTVEAMLAMGVTVFIEAGPKNV LAGLINKTAPQGSVTVHNVQDPDGLRAALGALK" misc_feature complement(2170789..2171703) /locus_tag="Deba_1955" /note="Acyl transferase domain; Region: Acyl_transf_1; cl08282" /db_xref="CDD:186816" misc_feature complement(2170846..2171697) /locus_tag="Deba_1955" /note="malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128" /db_xref="CDD:188028" gene complement(2171899..2172438) /locus_tag="Deba_1956" /db_xref="GeneID:9494424" CDS complement(2171899..2172438) /locus_tag="Deba_1956" /note="COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR011991; KEGG: sfu:Sfum_3768 DtxR family iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor; SPTR: A0LPT5 Iron (Metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain" /codon_start=1 /transl_table=11 /product="iron (metal) dependent repressor, DtxR family" /protein_id="YP_003807915.1" /db_xref="GI:302343386" /db_xref="GeneID:9494424" /translation="MVQQEQNNLSSNLEDYLEAIYHLQADKKVARAKDIADRMGVSRA SVTGALKALAEKGLINYEPYSYTTLTNAGEDVAGKIVERHAVLKDFFQHILMLSSNSA EENACRVEHAMDDEAMDRLVQFLGFLRTCPRSGEDWLKNFRRFCGRSEIAVSPAQVDD CRACLEKCTDELTDDGGCS" misc_feature complement(2172001..2172423) /locus_tag="Deba_1956" /note="Mn-dependent transcriptional regulator [Transcription]; Region: TroR; COG1321" /db_xref="CDD:31512" misc_feature complement(2172244..2172411) /locus_tag="Deba_1956" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2172019..2172231) /locus_tag="Deba_1956" /note="Iron dependent repressor, metal binding and dimerisation domain; Region: Fe_dep_repr_C; pfam02742" /db_xref="CDD:145737" gene 2172651..2173715 /locus_tag="Deba_1957" /db_xref="GeneID:9494425" CDS 2172651..2173715 /locus_tag="Deba_1957" /note="InterPro IPR013216; KEGG: mma:MM_1672 methyltransferase; PFAM: methyltransferase type 11; SPTR: Q8PWB7 methyltransferase; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003807916.1" /db_xref="GI:302343387" /db_xref="GeneID:9494425" /translation="MGLFRRKTPLDAADNAQFIDLAYHIILGRAPDAEGRKHHLARLD SGQVSRDGVIYTFATSDEFKHRVRILYDPTDILFDFVELDDGSAFEKHVQSQPFEGAQ LCELVNPRRWLEDGWRAYQREMTIIPMSLSDMHRKGWEWTQTIYGLDLLGALGPERRC LGVGAGHEPVAYWLANKTGEVIATDLYEGSWAVDGSREGDPTVLDDPKKYAPFPYRED RLRFMRMDGTKLDFPDESFDVVFSISSIEHFGGHEASARSMAEIGRVLKPGGVAAIAT ECIVNDSNHQEFFRIEELERYIVAPSGLKLIQKPTFRLPRKAIERPTIMPDEQTHTPH MALKAGNVVYTSVLFFFQKY" misc_feature 2173131..2173472 /locus_tag="Deba_1957" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 2173712..2174506 /locus_tag="Deba_1958" /db_xref="GeneID:9494426" CDS 2173712..2174506 /locus_tag="Deba_1958" /note="InterPro IPR010664; KEGG: pca:Pcar_1941 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: Q3A375 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807917.1" /db_xref="GI:302343388" /db_xref="GeneID:9494426" /translation="MSPAGRDGLARGAAPALAIVADQPRMQEFCLYRDERAGYTLEGL ATAHKRQQSSAGKRLDRRRTTILRRSQLIIIATLSAIILGVAVAVFVHEPARLPVFDD EGGSPLLAADGQPRMRGVTYTHVENGVRKWSLTASGAKQNPEAESFTLADVRLEFFPK GGGKVTIRGNTGRYERGKRTIMLEGDVVATTHDGIRLVTDNLAYNDVDQTVDTDAPVH ISGVDFDLKAKGMRVFVPQDKVVFKKDVVSNFIPSGEGPPPGVTMD" misc_feature <2174087..2174473 /locus_tag="Deba_1958" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3117; cl01200" /db_xref="CDD:186380" gene 2174541..2175092 /locus_tag="Deba_1959" /db_xref="GeneID:9494427" CDS 2174541..2175092 /locus_tag="Deba_1959" /note="COGs: COG1934 conserved hypothetical protein; InterPro IPR005653:IPR014340; KEGG: gme:Gmet_1281 OstA-like protein; PFAM: OstA family protein; SPTR: Q39W57 OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA" /codon_start=1 /transl_table=11 /product="lipopolysaccharide transport periplasmic protein LptA" /protein_id="YP_003807918.1" /db_xref="GI:302343389" /db_xref="GeneID:9494427" /translation="MKRLTIAATLFVFCLFAAGAALAAELVASDKPINVDADSLEVDN KNNVAHFIGKVTAKQGDVNIVCDQLDVYYDNTDKPRQEAPAQASGESALGLGGGDGRV TKVVALGHVRVTQKDRVAVGRKGTYWAGARKLLMEGNATVWQGKNQVAGEKITVFLDQ DRALVHGQPGKRVSVTIVPDKKK" misc_feature 2174625..2175080 /locus_tag="Deba_1959" /note="OstA-like protein; Region: OstA; cl00844" /db_xref="CDD:193952" gene 2175123..2175830 /locus_tag="Deba_1960" /db_xref="GeneID:9494428" CDS 2175123..2175830 /locus_tag="Deba_1960" /note="COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: sat:SYN_00946 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q2LSN4 ABC transporter ATP-binding protein; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807919.1" /db_xref="GI:302343390" /db_xref="GeneID:9494428" /translation="MHKLVKVYGRRRVVDDVSLEVNDQEIVGLLGPNGAGKTTSFYMT VGMIHPTEGDISLNDETITQLPMYQRARKGISYLPQESSIFQKLSVEDNIKAILQTLP LDERAQEERLERLLDDLGVGHLRKNKAYSLSGGERRRVEISRLLVTDPKFILLDEPFA GIDPIAVGDLQEIIRHLRDRGIGVLISDHNVRETLCVCDRAYILAQGKVIEQGDPEHI AQSEVARRIYLGEEFSL" misc_feature 2175129..2175812 /locus_tag="Deba_1960" /note="The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in...; Region: ABC_YhbG; cd03218" /db_xref="CDD:72977" misc_feature 2175132..2175827 /locus_tag="Deba_1960" /note="ABC-type (unclassified) transport system, ATPase component [General function prediction only]; Region: YhbG; COG1137" /db_xref="CDD:31332" misc_feature 2175213..2175236 /locus_tag="Deba_1960" /note="Walker A/P-loop; other site" /db_xref="CDD:72977" misc_feature order(2175222..2175227,2175231..2175239,2175360..2175362, 2175588..2175593,2175687..2175689) /locus_tag="Deba_1960" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72977" misc_feature 2175351..2175362 /locus_tag="Deba_1960" /note="Q-loop/lid; other site" /db_xref="CDD:72977" misc_feature 2175516..2175545 /locus_tag="Deba_1960" /note="ABC transporter signature motif; other site" /db_xref="CDD:72977" misc_feature 2175576..2175593 /locus_tag="Deba_1960" /note="Walker B; other site" /db_xref="CDD:72977" misc_feature 2175600..2175611 /locus_tag="Deba_1960" /note="D-loop; other site" /db_xref="CDD:72977" misc_feature 2175675..2175695 /locus_tag="Deba_1960" /note="H-loop/switch region; other site" /db_xref="CDD:72977" gene 2175837..2177348 /locus_tag="Deba_1961" /db_xref="GeneID:9494429" CDS 2175837..2177348 /locus_tag="Deba_1961" /note="COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: hoh:Hoch_2755 RNA polymerase, sigma 54 subunit, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; SPTR: D0LNA6 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma 54 subunit, RpoN" /protein_id="YP_003807920.1" /db_xref="GI:302343391" /db_xref="GeneID:9494429" /translation="MGLEIKQALKMTQQLVMTPQLQQAIKLLQLSRLELADTINQELL ENPMLEMVEETDQQQRQEDADSGGEPADATGPDGPLTQDLGVQAEGSGEVDVREQVSD EFDWENYLGEYSSATRAEESAIHEDKDAPPYESLITRSASLQEHLLWQLKMSRLDDEQ MRVGELIIGNLDGDGYLQSSLEDIAQQRGVSPAQAEVVLKVIQQLDPLGVAARDLREC LLIQALELYPQHDVALDILEGHMDLLEKRQYQQIAKKLGVGLDEVAEALDIIRLLDPK PGRSVSEEEPQYITPDIYVYKIDGEFVIVLNEDGLPKLRVNNFYRDSLAKGGDPKAKE YVQDKLRSAMWLIRSIHQRQRTIYKVTEAIVKFQREFFERGVAQLKPLVLRDVAEEVG MHESTISRVTTNKYVHTPQGVFELKYFFNSGINRVDGGSLASEAVKDRIRHLIAEEDR SRPLSDQTIAEMLKKEDIDIARRTVAKYREMLGILPSSRRREPLGGLPKANGR" misc_feature 2175852..2177309 /locus_tag="Deba_1961" /note="RNA polymerase factor sigma-54; Reviewed; Region: PRK05932" /db_xref="CDD:180314" misc_feature 2175852..2175995 /locus_tag="Deba_1961" /note="Sigma-54 factor, Activator interacting domain (AID); Region: Sigma54_AID; pfam00309" /db_xref="CDD:189497" misc_feature 2176215..2176796 /locus_tag="Deba_1961" /note="Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963" /db_xref="CDD:147239" misc_feature 2176833..2177309 /locus_tag="Deba_1961" /note="Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552" /db_xref="CDD:113327" gene 2177435..2177977 /locus_tag="Deba_1962" /db_xref="GeneID:9494430" CDS 2177435..2177977 /locus_tag="Deba_1962" /note="COGs: COG1544 ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: gsu:GSU1886 ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; SPTR: Q74BZ2 ribosomal subunit interface protein; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein" /codon_start=1 /transl_table=11 /product="ribosomal subunit interface protein" /protein_id="YP_003807921.1" /db_xref="GI:302343392" /db_xref="GeneID:9494430" /translation="MQIQVAFRNVEPSEAIKEYARDKVGKVQKYLDGPIEANVTLQVQ KHRHEVDVNIFAGGLKIHGSETTGDLYSAIDLVMDKLERQLRRYRDKLTNFGRNGRKG REVPYQVAVYQPEALVDSPQPATVMSESLTAKPMDVDEAAMQLDLSEDDFMVFINART DTLNVIYRRSDGNFGLIEPQ" misc_feature 2177438..2177707 /locus_tag="Deba_1962" /note="RaiA ('ribosome-associated inhibitor A', also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site...; Region: RaiA; cd00552" /db_xref="CDD:29642" misc_feature order(2177444..2177446,2177450..2177452,2177456..2177458, 2177510..2177512,2177519..2177521,2177537..2177542, 2177552..2177554,2177564..2177566,2177591..2177593, 2177600..2177611,2177618..2177620,2177624..2177626, 2177633..2177635,2177639..2177641,2177648..2177650, 2177690..2177695,2177705..2177707) /locus_tag="Deba_1962" /note="30S subunit binding site; other site" /db_xref="CDD:29642" gene 2177996..2178457 /locus_tag="Deba_1963" /db_xref="GeneID:9494431" CDS 2177996..2178457 /locus_tag="Deba_1963" /note="COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178:IPR016152; KEGG: sfu:Sfum_2067 PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: A0LJZ8 Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2" /codon_start=1 /transl_table=11 /product="PTS IIA-like nitrogen-regulatory protein PtsN" /protein_id="YP_003807922.1" /db_xref="GI:302343393" /db_xref="GeneID:9494431" /translation="MKLTDILSKDHIIADLRSRTKRGVMEELCQSLASTHPDLEPGRL MEVLIERERLGSTGIGDGIAIPHGKTDKVGELMLAFGRSLAGVDFDSLDAKPAHLFFL VVAPENSAGVHLKALARISRLLKSTAVRRELLEAADAIEIYEIVAAQDEEF" misc_feature 2178014..2178433 /locus_tag="Deba_1963" /note="PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211" /db_xref="CDD:29266" misc_feature order(2178146..2178148,2178194..2178196) /locus_tag="Deba_1963" /note="active site" /db_xref="CDD:29266" misc_feature 2178194..2178196 /locus_tag="Deba_1963" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29266" gene 2178513..2179409 /locus_tag="Deba_1964" /db_xref="GeneID:9494432" CDS 2178513..2179409 /locus_tag="Deba_1964" /note="COGs: COG1660 P-loop-containing kinase; InterPro IPR005337; KEGG: chy:CHY_0272 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Q3AFE0 UPF0042 nucleotide-binding protein CHY_0272; PFAM: P-loop ATPase protein family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807923.1" /db_xref="GI:302343394" /db_xref="GeneID:9494432" /translation="MTDEKQHGRGRFVVITGLSGSGKSSVLKAMEDLGYYAVDNLPPQ LLPSFVNLPLKQLDDSFKVALGMDIRGHLFPEIFPGVFSELLQEGFPLEMLFLEASDD VLLRRFSETRRAHPVARANDGLAASIRRERALLEPIRAMANQVLDTSKFTIHQLRRAI AGLYSDSDAAAGMQVNIMSFGYKFGLPGEADLVMDVRFLPNPYFVDELRPLGGKDEPV AEFVLSQEATKAFLGRFLDLLKFLIPHYQNEGKSRLTVAIGCTGGRHRSVALAEWLAR QLSSAETTVTVRHRDLDEGAKS" misc_feature 2178543..2179403 /locus_tag="Deba_1964" /note="P-loop ATPase protein family; Region: ATP_bind_2; cl10035" /db_xref="CDD:186894" gene 2179406..2179804 /locus_tag="Deba_1965" /db_xref="GeneID:9494433" CDS 2179406..2179804 /locus_tag="Deba_1965" /note="COGs: COG2893 phosphotransferase system mannose/fructose-specific component IIA; InterPro IPR004701; KEGG: gur:Gura_2967 PTS system fructose subfamily IIA component; PFAM: PTS system fructose subfamily IIA component; SPTR: A5G5S1 PTS system fructose subfamily IIA component; PFAM: PTS system fructose IIA component" /codon_start=1 /transl_table=11 /product="PTS system fructose subfamily IIA component" /protein_id="YP_003807924.1" /db_xref="GI:302343395" /db_xref="GeneID:9494433" /translation="MIGIIVITHARLGRELVNAAEFILGKIERIETISLEPQSKTDFL SAQLEAAQAKVDGGDGVLILTDMFGGTPNNISLAYFDEGKVDVVTGVNLPMVIKAATS RQGKALAELSRAVRQAGHDSISAASELLAS" misc_feature 2179409..2179768 /locus_tag="Deba_1965" /note="PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_man; cd00006" /db_xref="CDD:28890" misc_feature order(2179430..2179432,2179472..2179477,2179508..2179510, 2179616..2179618,2179706..2179708) /locus_tag="Deba_1965" /note="active pocket/dimerization site; other site" /db_xref="CDD:28890" misc_feature order(2179430..2179432,2179601..2179603,2179616..2179618) /locus_tag="Deba_1965" /note="active site" /db_xref="CDD:28890" misc_feature 2179430..2179432 /locus_tag="Deba_1965" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:28890" gene 2179833..2180300 /locus_tag="Deba_1966" /db_xref="GeneID:9494434" CDS 2179833..2180300 /locus_tag="Deba_1966" /note="COGs: COG0456 acetyltransferase; InterPro IPR000182:IPR016181:IPR006464; KEGG: dvl:Dvul_1409 ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Q72BF8 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: acetyltransferase (GNAT) family; TIGRFAM: ribosomal-protein-alanine acetyltransferase" /codon_start=1 /transl_table=11 /product="ribosomal-protein-alanine acetyltransferase" /protein_id="YP_003807925.1" /db_xref="GI:302343396" /db_xref="GeneID:9494434" /translation="MTVMGRDHLRQVSAIERASFSAPWPEHFFLAHTLHPNSLPLVAL LPPAGLVVGHLIIWLAPGESLAQLQNLAVNEAFRRRGVAGRLLSHGLHLAKRRGAKRM RLEVRAGNRAAALLYERFGFRQTGLLPDYYAAEGEDALVMELALDDGRPAAGA" misc_feature 2179854..2180258 /locus_tag="Deba_1966" /note="ribosomal-protein-alanine acetyltransferase; Region: rimI; TIGR01575" /db_xref="CDD:162430" misc_feature <2180028..2180270 /locus_tag="Deba_1966" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene 2180501..2181742 /locus_tag="Deba_1967" /db_xref="GeneID:9494435" CDS 2180501..2181742 /locus_tag="Deba_1967" /EC_number="2.7.2.3" /note="COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR015911:IPR001576:IPR015824:IPR015901; KEGG: gme:Gmet_1947 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: phosphoglycerate kinase; SPTR: Q39U98 phosphoglycerate kinase; PFAM: phosphoglycerate kinase" /codon_start=1 /transl_table=11 /product="phosphoglycerate kinase" /protein_id="YP_003807926.1" /db_xref="GI:302343397" /db_xref="GeneID:9494435" /translation="MKYINQLEDLKDKRVLIRVDFNVPLDEERNIADDNRIRAALPTI NYVLDEGGKVIVASHMGRPKGKRVESLSMAPVARRLGRLLKKEVALAPDCVGPEVEKM VSQMTSPGVIMLENLRFHDGETKNDPEFSQALARLCDVYVDDAFAVAHRAHASVVGVT QYAPVSVAGFTMKKELDYFRRAMIDPARPLAAVIGGAKAVTKLEALENLLNHVDKIIV GGAMANTFLKGVDYSVGNSMFEPELVPVANCLLRKAKELGVKLYIPVDCVVADRFDPK AETMITTVQEVPNDWMILDIGPATSMLYREALANCKTVIWNGPMGAFEMDAFSRGTYN MVSTVAQSYALSIVGGGDTDVAIHRLGETDNISYISTGGGAFLAMLTGDVLPAVEALG GATGMEVKGERDEKCFTKQRG" misc_feature 2180522..2181673 /locus_tag="Deba_1967" /note="Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level...; Region: Phosphoglycerate_kinase; cd00318" /db_xref="CDD:29400" misc_feature order(2180558..2180560,2180564..2180566,2180606..2180608, 2180675..2180677,2180852..2180854) /locus_tag="Deba_1967" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29400" misc_feature order(2181047..2181058,2181605..2181613) /locus_tag="Deba_1967" /note="hinge regions; other site" /db_xref="CDD:29400" misc_feature order(2181161..2181163,2181377..2181379,2181449..2181451, 2181455..2181457,2181461..2181472,2181551..2181559) /locus_tag="Deba_1967" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:29400" misc_feature 2181554..2181556 /locus_tag="Deba_1967" /note="catalytic site [active]" /db_xref="CDD:29400" gene 2181753..2182505 /locus_tag="Deba_1968" /db_xref="GeneID:9494436" CDS 2181753..2182505 /locus_tag="Deba_1968" /EC_number="5.3.1.1" /note="COGs: COG0149 Triosephosphate isomerase; InterPro IPR020861:IPR000652:IPR013785; KEGG: hmo:HM1_1604 triosephosphate isomerase; PFAM: triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Q8GDR3 Triosephosphate isomerase (Fragment); TIGRFAM: triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase" /codon_start=1 /transl_table=11 /product="triosephosphate isomerase" /protein_id="YP_003807927.1" /db_xref="GI:302343398" /db_xref="GeneID:9494436" /translation="MNRRIMVAGNWKMYKTIDQAVALAKAVAAGPARQGLDVLLCPNF VCLEAVVRAVAGSHVQVGGQNLHWQDEGAFTAEISGPMLRSVGASHVIIGHSERRQFF GETEKTVRMRLAAALRHGLKPIVCVGETQAERESGQTDDVLASQLAGGLAGLSAAEMV KVTLAYEPVWAIGTGLTASDEQAQQVHAFIRAWLAARFDNQVANSCGILYGGSVKPAN AAGLLRQKDIDGALVGGASLDADSFLGIIAAV" misc_feature 2181771..2182493 /locus_tag="Deba_1968" /note="Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311" /db_xref="CDD:73362" misc_feature order(2181780..2181782,2181786..2181788,2182035..2182037, 2182251..2182253,2182269..2182271,2182389..2182391, 2182446..2182448,2182452..2182457) /locus_tag="Deba_1968" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73362" misc_feature order(2181780..2181782,2181789..2181791,2181882..2181890, 2181894..2181896,2181903..2181905,2181942..2181944, 2181996..2181998,2182005..2182010,2182041..2182046) /locus_tag="Deba_1968" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73362" misc_feature order(2181786..2181788,2182035..2182037,2182251..2182253) /locus_tag="Deba_1968" /note="catalytic triad [active]" /db_xref="CDD:73362" gene 2182531..2182944 /locus_tag="Deba_1969" /db_xref="GeneID:9494437" CDS 2182531..2182944 /locus_tag="Deba_1969" /note="COGs: COG1314 Preprotein translocase subunit SecG; InterPro IPR004692; KEGG: sat:SYN_03791 protein translocase subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Q2LWZ2 Protein translocase subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit" /codon_start=1 /transl_table=11 /product="preprotein translocase, SecG subunit" /protein_id="YP_003807928.1" /db_xref="GI:302343399" /db_xref="GeneID:9494437" /translation="MQIALILLHLVACAILVLVVLLQTGKGASLGAAFGGASQTVFGS SGAQTFLGKMTTIVAVIFMVTSLTLAITAGGKGSKSVMADVAQPAAQQESAPPAPPKA DATAPAPTATDKGVAPAEKPAPQAPAAPAKPAEGK" misc_feature <2182642..2182749 /locus_tag="Deba_1969" /note="Preprotein translocase SecG subunit; Region: SecG; cl09123" /db_xref="CDD:195798" gene 2182966..2183050 /locus_tag="Deba_R0036" /db_xref="GeneID:9494438" tRNA 2182966..2183050 /locus_tag="Deba_R0036" /product="tRNA-Leu" /db_xref="GeneID:9494438" gene complement(2183243..2183932) /locus_tag="Deba_1970" /db_xref="GeneID:9494439" CDS complement(2183243..2183932) /locus_tag="Deba_1970" /note="COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198:IPR016040; KEGG: gsu:GSU0802 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Q1JVF9 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_003807929.1" /db_xref="GI:302343400" /db_xref="GeneID:9494439" /translation="MLKGKKVLIIGGGSGIGLAVAKLAQANGAELVVASRGASAQTRR LSEAVGAAVRTHDFDITAPDDHGRLFQEIGEIDHLVIAVRPAVRPAPLLAMDLAEVRR VFETKFWGPCGLIRVAHGFIRKAGTITLTSGVAGAKIYPGASAMALVNSLTETLCRVL AVELAPVRVNAVSPGFVKPKPAEMAHMAEKLPLGRFADAGEVAAAFLALITNPYQTGT VAVVDGGALLT" misc_feature complement(2183258..2183878) /locus_tag="Deba_1970" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: fabG; PRK05565" /db_xref="CDD:180133" misc_feature complement(2183264..2183878) /locus_tag="Deba_1970" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature complement(order(2183402..2183413,2183483..2183485, 2183495..2183497,2183534..2183542,2183615..2183617, 2183753..2183761,2183825..2183830)) /locus_tag="Deba_1970" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature complement(order(2183483..2183485,2183495..2183497, 2183534..2183536,2183612..2183614)) /locus_tag="Deba_1970" /note="active site" /db_xref="CDD:187544" gene complement(2184542..2184814) /locus_tag="Deba_1971" /db_xref="GeneID:9494440" CDS complement(2184542..2184814) /locus_tag="Deba_1971" /note="COGs: COG2119 membrane protein; InterPro IPR001727; KEGG: gvi:gsr0120 hypothetical protein; PFAM: protein of unknown function UPF0016; SPTR: Q7NPD5 Gsr0120 protein; PFAM: Uncharacterized protein family UPF0016" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807930.1" /db_xref="GI:302343401" /db_xref="GeneID:9494440" /translation="MDWKILATTFGAIFLAELGDKTQLACILMAAKTGKPWTVFLGTS LALVMVSLIGVLLAQALVNFLPTEWIKRGAAVGFMVIGALMLWGKL" misc_feature complement(2184569..2184799) /locus_tag="Deba_1971" /note="Uncharacterized protein family UPF0016; Region: UPF0016; pfam01169" /db_xref="CDD:189869" gene 2184865..2186052 /locus_tag="Deba_1972" /db_xref="GeneID:9494441" CDS 2184865..2186052 /locus_tag="Deba_1972" /EC_number="2.1.1.52" /note="COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR002052:IPR000241; KEGG: sfu:Sfum_1764 RNA methylase; PFAM: RNA methylase; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: A0LJ49 Putative RNA methylase; PFAM: Putative RNA methylase family UPF0020" /codon_start=1 /transl_table=11 /product="rRNA (guanine-N(2)-)-methyltransferase" /protein_id="YP_003807931.1" /db_xref="GI:302343402" /db_xref="GeneID:9494441" /translation="MSDVNLQRRVKRHIQAPEHDFFAVTAPGLEDLCAAELANLGAAQ TTSLAGGVAFHGRLEAMLQANLWLRTAGRVLMRLADFRVRTWADLTRQAAAVPWELLL PADGSSLDVRVSLHESNLHHAGRVAEEIFWAAAKAMERQGLTAPVKALPGQDDALILQ VRGVDRRASISLDTSGAHLHKRGYRQATAKAPLRETLAAALLMLCGYDGSRPLLDPMC GAGTLAIEAALMARALPPGLGRDFAFQRLAFHRPAAWAHLQKTAAANALAVPPAPIFA GDRLKSGLELAQANAARAGVAQSIQWGQADFFERPAPTATAGLVVINPPYGKRLGSVS QAEQIVRRIGRHLAEHYRGWRCGVVLYLPQWAELLGLEQIASLEVPHGGLKVTMFCGQ VAG" misc_feature 2184922..2186031 /locus_tag="Deba_1972" /note="Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]; Region: COG0116" /db_xref="CDD:30465" misc_feature 2185408..2186022 /locus_tag="Deba_1972" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(2186056..2187141) /locus_tag="Deba_1973" /db_xref="GeneID:9494442" CDS complement(2186056..2187141) /locus_tag="Deba_1973" /note="COGs: COG0552 Signal recognition particle GTPase; InterPro IPR000897:IPR003593:IPR013822:IPR004390; KEGG: gsu:GSU1132 cell division protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; SPTR: Q74E32 Cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY" /codon_start=1 /transl_table=11 /product="signal recognition particle-docking protein FtsY" /protein_id="YP_003807932.1" /db_xref="GI:302343403" /db_xref="GeneID:9494442" /translation="MGIFGFGRKKKQQQADQAIETGQSQAPVAAEAAVDEAAPPAAVS DAPATSVSDPAPEARKKGLLARLAERLGKTREKISGSIDKIAIGRKIDDEVLDELEEV LVTADLGVKTTAELIGGLRGKVRRKELADAEALKGALRAGIEEIFGRTAAPPAMTAKP HVIMVVGVNGVGKTTTIGKLASHLSAQGKKVMLGAADTFRAAAAEQLEIWAQRVGCPI VRQKEGADPSAVAYDTVEAAVGRGVDVAIIDTAGRLHTKVNLMDELRKIHRVIGKKMD GAPHEVILVLDATTGQNALNQAKMFNEAVQLTGLILTKLDGTAKGGVAVAIAGELKLP ICYVGVGEHLDDLRPFDAREFAEAIFG" misc_feature complement(2186059..2186964) /locus_tag="Deba_1973" /note="signal recognition particle-docking protein FtsY; Provisional; Region: PRK10416" /db_xref="CDD:182441" misc_feature complement(2186722..2186943) /locus_tag="Deba_1973" /note="SRP54-type protein, helical bundle domain; Region: SRP54_N; pfam02881" /db_xref="CDD:190463" misc_feature complement(2186125..2186661) /locus_tag="Deba_1973" /note="The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115" /db_xref="CDD:48379" misc_feature complement(2186620..2186643) /locus_tag="Deba_1973" /note="P loop; other site" /db_xref="CDD:48379" misc_feature complement(order(2186191..2186196,2186203..2186205, 2186386..2186388,2186551..2186553)) /locus_tag="Deba_1973" /note="GTP binding site [chemical binding]; other site" /db_xref="CDD:48379" gene complement(2187241..2190807) /locus_tag="Deba_1974" /db_xref="GeneID:9494443" CDS complement(2187241..2190807) /locus_tag="Deba_1974" /note="COGs: COG1196 Chromosome segregation ATPase; InterPro IPR017871:IPR003395:IPR010935:IPR011890; KEGG: gme:Gmet_1174 condensin subunit Smc; PFAM: SMC domain protein; SPTR: Q39WG2 Condensin subunit Smc; TIGRFAM: chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type" /codon_start=1 /transl_table=11 /product="chromosome segregation protein SMC" /protein_id="YP_003807933.1" /db_xref="GI:302343404" /db_xref="GeneID:9494443" /translation="MKVKRLEISGFKSFAQRAVLDFPDGLCAVVGPNGCGKSNVVDAI RWVLGEQSARQLRGQAMEDVIFNGAQSHKPTGLAEVSIVFENAGTISAPQYADLAEIM VTRRLYRNGESDYQINRRPCRLKDIQQLLMDTGLGNRAYAIIEQGKVASFIDSRPEER RLWVEEAAGITRYKNQKKQSLKKMEGARENLDRLQDIIIEVDSQMARLQRQAKKAMRH KELRDKIRELDLALGSFEFAALGQAHGEVSAELAAATAQLELTQRNLSIQETDLERAR LAMLEAEQLIDQAGAKRLETQGAIQRAENELTLLGREAENMRRLAQRLGGERDELVGR LKTMGEDMAKAAARAERCRAEAQSGQRLAEEAAEQVALAQESLRVRQRRADEAKHRLV DHLSRRGQINNRLGDLERRQAEIRRRQEQLAIRRGELEDELAQAEDDLAQAVQRIKEL TADLAAAQARADALQQRQKSQQDGLRALRRDEDDQAKAHQALSAGVEALELSLGSLNW AAESVRQVVAAAQAGQLPVALLGLVVQRVEAKPGHEELLALALGPWLQALIVQGAAEA EALTHWAAREGLGALRVVALDRLATRGVAAPAEATRAVELATFAPGLEALAHLLEGVG CCADQAAAWAAAPGLLPGQAVVAAGGLRLDGPALLTLAGDQGQSGGSVLGQRNELTKR RQQLEQSRLLLDDLSAQRQALQADMARVEAQATEVASQLQAGQRELQRARQHSSALQE AAGQRRRRLEGLEFDHGEALEELAQLRQEQEDLAAEAEELEQIGQRLEDELSQAQEAL DEAREALEDARTRESEVKLRAASRQSEADHAAQEAKRLERETAAAGQRRQSLDDEIAG ADESVRSLLARRQGEQTRLGGLYEQLDSLEAAYNQARQGHGEIQARAMALEAEIKAAR AGQKSIEAEIQAHEFKRRELEMRRDQLREQVLERCRVDLAQDLATHLPAGPFDPQANR QRLDKLRVLLGRLGPVNMEAIVEHEALQERHRFLTEQKADLDASLDDLRQAIRKINRT SRDRFMDTLEEVNQRLGTVFPVLFGGGSARLVLDEGVDPLEAGLHLLVEPPGKKVKNL EALSGGEKALAAVAVLFALFLIRPAPFCILDEVDAPLDEANTGRFLDLVRQLGQHSQI ITITHNRRTMEIMDVLYGVTMEERGISKLLSVSLMEGASMAA" misc_feature complement(<2190544..2190801) /locus_tag="Deba_1974" /note="Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (...; Region: ABC_SMC_barmotin; cd03278" /db_xref="CDD:73037" misc_feature complement(2187268..2190798) /locus_tag="Deba_1974" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:162739" misc_feature complement(2190694..2190717) /locus_tag="Deba_1974" /note="Walker A/P-loop; other site" /db_xref="CDD:73037" misc_feature complement(order(2190691..2190699,2190703..2190708)) /locus_tag="Deba_1974" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73037" misc_feature complement(2187286..>2187579) /locus_tag="Deba_1974" /note="Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (...; Region: ABC_SMC_barmotin; cd03278" /db_xref="CDD:73037" misc_feature complement(2187508..2187537) /locus_tag="Deba_1974" /note="ABC transporter signature motif; other site" /db_xref="CDD:73037" misc_feature complement(2187448..2187465) /locus_tag="Deba_1974" /note="Walker B; other site" /db_xref="CDD:73037" misc_feature complement(2187430..2187441) /locus_tag="Deba_1974" /note="D-loop; other site" /db_xref="CDD:73037" misc_feature complement(2187349..2187369) /locus_tag="Deba_1974" /note="H-loop/switch region; other site" /db_xref="CDD:73037" gene complement(2190937..2192415) /locus_tag="Deba_1975" /db_xref="GeneID:9494444" CDS complement(2190937..2192415) /locus_tag="Deba_1975" /EC_number="4.1.99.3" /note="COGs: COG0415 deoxyribodipyrimidine photolyase; InterPro IPR005101; KEGG: hoh:Hoch_4973 DNA photolyase FAD-binding protein; PFAM: DNA photolyase FAD-binding; PRIAM: deoxyribodipyrimidine photo-lyase; SPTR: D0LU98 DNA photolyase FAD-binding protein; PFAM: FAD binding domain of DNA photolyase; TIGRFAM: photolyase PhrII" /codon_start=1 /transl_table=11 /product="deoxyribodipyrimidine photo-lyase" /protein_id="YP_003807934.1" /db_xref="GI:302343405" /db_xref="GeneID:9494444" /translation="MQPVPTIRIRPLNQRPLDPAGDYVLYWMCAQRRTGWNFGLQRAA WLAGELKRPLVILEALRLDYPHASERLHCFILQGMAANAAALAGRGALYYPYVEPARG AGKGLLAALAQRACAVVADDYPTFFIPAMLAAAAAQCAARLEAVDSCGLLPLAASDHA FPTAHAFRRFLQKNLPEHLAQPPVADPLAGLPAPPPILPRWIIERWPPAWSADLARPQ ALIAGLAIDHAVGPVVGRVGGAAAAGATLARFLGRGLALYDQLRNQPAEDVGSGLSPY LHFGHIAAHQVFAALADVEGWSPQRVGGPAKGARQGWWGLSPTAEAFADQFITWRELG YNFCHHRPGQEGKLESLPDWAGQTLAAHAADPRPYVYDLERLETARTHGAIWNAAQNQ LRQEGRIHNYLRMLWGKKILHWTETPAQALAIMVHLNDRWALDGRDPNSHSGIMWCLG RYDRPWGPERPVFGKVRYMSMANTARKLRLGPYLARWSPATP" misc_feature complement(2191012..2191644) /locus_tag="Deba_1975" /note="FAD binding domain of DNA photolyase; Region: FAD_binding_7; pfam03441" /db_xref="CDD:146197" gene 2192528..2193496 /locus_tag="Deba_1976" /db_xref="GeneID:9494445" CDS 2192528..2193496 /locus_tag="Deba_1976" /note="COGs: COG3272 conserved hypothetical protein; InterPro IPR007553:IPR013560:IPR017087; KEGG: sat:SYN_02271 cytoplasmic protein; PFAM: Protein of unknown function DUF1722; protein of unknown function DUF523; SPTR: Q2LQU0 Hypothetical cytosolic protein; PFAM: Protein of unknown function (DUF523); Protein of unknown function (DUF1722)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807935.1" /db_xref="GI:302343406" /db_xref="GeneID:9494445" /translation="MRQFARPKVALSQCLGSTACRWNGAAIDDPFVRRLAAHVDFLPV CPEMAIGLGAPRAPLRVVDDGSGPRLLQPATGLDHTRAMVEFCQNHLAGLTAVDGFLL KDRSPSCGPHGVRIYAGPQKGASSRQGGDFFGLMAQQTHPRAAIETEGRLRNFTLREH FLTKLFTLAAFGQVAASERLSALVEFQAANKLLLMAYNQQAMRALGRVVAAGRDADWP TLTAQYANVLQQALARQASRANHQNALQHAMGWFKKDLTGPEKAHFLDLLAKYRAGKA PLAVLQALVAGWAIRHQNSYLAGQSYLRPYPEDLLDLGDSGKGRDF" misc_feature 2192552..2192977 /locus_tag="Deba_1976" /note="Protein of unknown function (DUF523); Region: DUF523; cl00733" /db_xref="CDD:153961" misc_feature 2193098..2193448 /locus_tag="Deba_1976" /note="Protein of unknown function (DUF1722); Region: DUF1722; cl01284" /db_xref="CDD:186414" gene complement(2193581..2195668) /locus_tag="Deba_1977" /db_xref="GeneID:9494446" CDS complement(2193581..2195668) /locus_tag="Deba_1977" /EC_number="6.1.1.14" /note="COGs: COG0751 glycyl-tRNA synthetase subunit beta; InterPro IPR002311:IPR008909:IPR006194:IPR015944; KEGG: gsu:GSU0579 glycyl-tRNA synthetase subunit beta; PFAM: glycyl-tRNA synthetase subunit beta; DALR anticodon binding domain protein; PRIAM: glycine--tRNA ligase; SPTR: Q1K046 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, subunit beta; PFAM: glycyl-tRNA synthetase subunit beta; DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, subunit beta" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase, subunit beta" /protein_id="YP_003807936.1" /db_xref="GI:302343407" /db_xref="GeneID:9494446" /translation="MAELLFEIGCEEMPARFVAPGIEQMAALGAEMLVREGLCASPDA AQVKAFGAPRRLALWARNLAAIQPDRQEQVLGPPKANAYDQNGEPTKAALGFAKSQGV ELTSLTFIDTDKGPRLGYVKTIAGRPAMAVLPELLVKLVESLHFAKSMRWGSEKFRFA RPIHWFVALFDGQVVPLEITGVKSGDQTRGHRFMAPQAIQVRGGEDYLTKLRQAHVLV DRPERIEATRQQVAQAAAQAGGRLLADEALLLENADLVEQPTACWGSFDKQFLEVPRE VVITAMREHQRYHSLEDDQGRLLPAFIAVNNTTPRDLAVVANGHQRVLRARLADARFF LDEDRKRPLADYLGDLQNVTYHAKLGSSFDKVQRVIDLAVWLAQRLAPELVEPTRRAA QLAKCDLVTGMVGEFPSLQGVIGAEYARRDGEDPQVATAIAEHYQPVGADAPLPKGMI GALVGLADRIDTICGLFGVGEAPTGAADPYALRRAAIAVLRLLMEKNLTISLSQTLAQ ALAGLAGRLSAADQTVADEVTKFFAARLAGLMAEAGAPTDVAQAVLAAGLDDPGAAMA RAKALAAVKDSPDFAPLAAGMKRVMNILKKEAAQVPSHAPDPALMTIEAERQLRQAVL AVADEAQALFASGDYAQFLRRLSELKGPIDAFFDGVLVMDNDQAVRQNRLALLESVAR LFRGLAEFTYLQL" misc_feature complement(2193587..2195668) /locus_tag="Deba_1977" /note="glycyl-tRNA synthetase subunit beta; Validated; Region: glyS; PRK01233" /db_xref="CDD:179258" misc_feature complement(2193998..2195659) /locus_tag="Deba_1977" /note="Glycyl-tRNA synthetase beta subunit; Region: tRNA_synt_2f; pfam02092" /db_xref="CDD:190207" misc_feature complement(2193614..2193907) /locus_tag="Deba_1977" /note="Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020" /db_xref="CDD:196302" gene complement(2195668..2196546) /locus_tag="Deba_1978" /db_xref="GeneID:9494447" CDS complement(2195668..2196546) /locus_tag="Deba_1978" /EC_number="6.1.1.14" /note="COGs: COG0752 glycyl-tRNA synthetase subunit alpha; InterPro IPR002310:IPR006194; KEGG: sat:SYN_01536 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha; PRIAM: glycine--tRNA ligase; SPTR: Q2LVI0 glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase, subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, subunit alpha" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase, subunit alpha" /protein_id="YP_003807937.1" /db_xref="GI:302343408" /db_xref="GeneID:9494447" /translation="MTFQDLIMALQGYWAKKGCIIGQSYDIEVGAGTFNPHTLLRVLG PEPWKAAYVEPSRRPTDGRYGENPNRLQHYYQYQVILKPSPLNVQELYLDSLRAFGVD PLDHDIRFVEDDWESPTLGAWGVGWEVWLDGMEITQFTYFQQAGSIDLDPVSVEITYG LERIAMYLQGVDNVYDLAWTEGVRYGDVHHKGEWEHSTYNFEVADIDMLWRLFDSYEA EAKRVLAAGLVMPGYDYCLKCSHAFNLLEARGAISVTQRTAYIARIRDLARRAAEAYV NQRQQMGHPLLKREVA" misc_feature complement(2195680..2196546) /locus_tag="Deba_1978" /note="glycyl-tRNA synthetase, tetrameric type, alpha subunit; Region: glyQ; TIGR00388" /db_xref="CDD:129483" misc_feature complement(2195707..2196543) /locus_tag="Deba_1978" /note="Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733" /db_xref="CDD:29812" misc_feature complement(order(2195833..2195835,2195845..2195847, 2195854..2195865,2195869..2195871,2195881..2195883, 2195890..2195892,2195899..2195904,2195911..2195916, 2195923..2195925,2195932..2195934,2195938..2195940, 2195959..2195964,2195971..2195973,2196010..2196012, 2196328..2196330,2196376..2196378,2196388..2196390, 2196415..2196417,2196463..2196474,2196478..2196480, 2196484..2196489,2196511..2196513,2196523..2196525, 2196535..2196537)) /locus_tag="Deba_1978" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29812" misc_feature complement(2196469..2196492) /locus_tag="Deba_1978" /note="motif 1; other site" /db_xref="CDD:29812" misc_feature complement(order(2196058..2196063,2196067..2196072, 2196076..2196081,2196127..2196129,2196139..2196144, 2196307..2196315,2196319..2196321,2196325..2196327, 2196373..2196375,2196448..2196450,2196454..2196456)) /locus_tag="Deba_1978" /note="active site" /db_xref="CDD:29812" misc_feature complement(2196367..2196378) /locus_tag="Deba_1978" /note="motif 2; other site" /db_xref="CDD:29812" misc_feature complement(2196058..2196069) /locus_tag="Deba_1978" /note="motif 3; other site" /db_xref="CDD:29812" gene complement(2196729..2197922) /locus_tag="Deba_1979" /db_xref="GeneID:9494448" CDS complement(2196729..2197922) /locus_tag="Deba_1979" /EC_number="2.6.1.1" /note="COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR004838:IPR001176:IPR004839:IPR015424:IPR 015421; KEGG: rsd:TGRD_536 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: B1H0I7 Aspartate aminotransferase; PFAM: Aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="aminotransferase class I and II" /protein_id="YP_003807938.1" /db_xref="GI:302343409" /db_xref="GeneID:9494448" /translation="MELSRRVTSIAPSPTLALDAKANQMRAEGIDVINFTVGQPDFNT PERICQAAIKAINDGFTRYTPAAGTPELKQAVCGKFKRDNGLDYTPDQVMINVGGKHS GYLVMQALLNEGDEVVVPAPYWVSYPPMVILAGGTPVIVPTQEKNKFKLQLAELEKAV SNKTKAIFLNSPSNPTGAAYSAEELLPVAQFCAERGILIVSDEIYEPMMYDGAKFTAT ASLSPLIYQNTVTLNGVSKAYAMTGWRIGYMGGPVDLIKACSKIQSQSTSNPTSIAQK AAVEALNGPQDDVKAMVEVFARRRDLIYDLLNQIPGVSCFKPEGAFYAFPNFAAYYGK KAGDKVMTGSSELCEHLLATAHVALVPGSAFGHDECIRFSFATSDELIKAGVERVATA LAKLS" misc_feature complement(2196735..2197916) /locus_tag="Deba_1979" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature complement(2196753..2197826) /locus_tag="Deba_1979" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(2197188..2197190,2197212..2197217, 2197221..2197223,2197308..2197310,2197401..2197403, 2197551..2197553,2197623..2197631)) /locus_tag="Deba_1979" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(2197092..2197094,2197101..2197103, 2197188..2197196,2197329..2197331,2197521..2197523, 2197620..2197622)) /locus_tag="Deba_1979" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(2197212..2197214) /locus_tag="Deba_1979" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(2198063..2198449) /locus_tag="Deba_1980" /db_xref="GeneID:9494449" CDS complement(2198063..2198449) /locus_tag="Deba_1980" /note="InterPro IPR009875; KEGG: dat:HRM2_37380 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: C8R280 Type IV pilus assembly PilZ; PFAM: PilZ domain" /codon_start=1 /transl_table=11 /product="type IV pilus assembly PilZ" /protein_id="YP_003807939.1" /db_xref="GI:302343410" /db_xref="GeneID:9494449" /translation="MVEQRRRTRVEFRTKADVQAVGLRMLDLETRDLSHKGVFILGDL PLKEGQGCMVTIYLPSDAEDAPVLSLEGRVARVVKGGVAIDFISMDPDTYMHLRHLVL LNADNPDLAAEEFCKPAFPDLEKEIK" misc_feature complement(<2198249..2198443) /locus_tag="Deba_1980" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene 2198825..2199607 /locus_tag="Deba_1981" /db_xref="GeneID:9494450" CDS 2198825..2199607 /locus_tag="Deba_1981" /note="COGs: COG1635 Flavoprotein involved in thiazole biosynthesis; InterPro IPR003042:IPR002922; KEGG: mth:MTH1620 ribulose-1,5-biphosphate synthetase; PFAM: thiamine biosynthesis Thi4 protein; SPTR: C0GVS7 Thiazole biosynthesis enzyme; TIGRFAM: thiazole biosynthesis enzyme; PFAM: Thi4 family; TIGRFAM: thiazole biosynthesis enzyme" /codon_start=1 /transl_table=11 /product="thiazole biosynthesis enzyme" /protein_id="YP_003807940.1" /db_xref="GI:302343411" /db_xref="GeneID:9494450" /translation="MLDEVTISRAIVSTYLQKLQDHLELDVAIVGGGPSGLVAGYKLA QAGRKVALFERKLSLGGGMWGGGMMMNEIVVQEQAKRILDEFGVPSKEFQPGYHTADS VLCSTTLASKACLAGLTVFNLVSVEDVMVRDSRVTGLVINWSAVEMGGLHVDPLTIRA KWVIDATGHAAEVLGVISRKVDARLLTENGRVMGERSLWADVAETNTLGNTREAFPGV YTAGMCANAVFGSYRMGPVFGGMLLSGEKAAQEVHRRLSEEG" misc_feature 2198825..2199601 /locus_tag="Deba_1981" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 2198825..2199601 /locus_tag="Deba_1981" /note="Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]; Region: THI4; COG1635" /db_xref="CDD:31822" gene complement(2199652..2200692) /locus_tag="Deba_1982" /db_xref="GeneID:9494451" CDS complement(2199652..2200692) /locus_tag="Deba_1982" /note="COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR019734:IPR001440:IPR013105:IPR011717:IPR 013026:IPR011990; KEGG: sfu:Sfum_1501 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; Tetratricopeptide TPR_4; SPTR: A0LID8 hypothetical protein; PFAM: Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807941.1" /db_xref="GI:302343412" /db_xref="GeneID:9494451" /translation="MLVVLAALFCAGCGGGAAAGLRGVDQAEAEEMRAREEAAGRDEL QAKADRAMEADPTALEAHGDQLAASGEAMAALFQYNRALAKAPADQAARLRGKTALLH LRGGGYAQAERIYAALIQADEGDAQAWQGLGLALLAQDRPGEAQKALERAVGLDAALW KARNGLGVALNRQGRAAEAMAHFEAAIRLQPGQAAPHNNLGLALMAQGRLDQAQRAFT RAMRLAPADDKPRNNLALVYFRQGRADQALALLEATMGPAKARHDLGCLLAGQGQYRQ AADMFRQALEISPTYYALAARHLDQVRQRADLGPGFEDDVGMARPQGALVDQVGQTPP ADDAAEGAVDGR" misc_feature complement(<2199685..>2200575) /locus_tag="Deba_1982" /note="cellulose synthase subunit BcsC; Provisional; Region: PRK11447" /db_xref="CDD:183140" misc_feature complement(2200018..2200263) /locus_tag="Deba_1982" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2200033..2200035,2200042..2200044, 2200054..2200056,2200090..2200092,2200135..2200137, 2200144..2200146,2200156..2200158,2200192..2200194, 2200237..2200239,2200246..2200248,2200258..2200260)) /locus_tag="Deba_1982" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(order(2200072..2200077,2200084..2200089, 2200096..2200101,2200177..2200182,2200189..2200194, 2200198..2200203)) /locus_tag="Deba_1982" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(2199823..2200098) /locus_tag="Deba_1982" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2199880..2199885,2199892..2199897, 2199904..2199909,2199973..2199978,2199985..2199990, 2199994..2199999,2200084..2200089,2200096..2200098)) /locus_tag="Deba_1982" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(2199841..2199843,2199850..2199852, 2199862..2199864,2199898..2199900,2199931..2199933, 2199940..2199942,2199952..2199954,2199988..2199990, 2200033..2200035,2200042..2200044,2200054..2200056, 2200090..2200092)) /locus_tag="Deba_1982" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(2200755..2201642) /locus_tag="Deba_1983" /db_xref="GeneID:9494452" CDS complement(2200755..2201642) /locus_tag="Deba_1983" /note="COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: dma:DMR_03330 hypothetical protein; PFAM: Metal-dependent hydrolase HDOD; SPTR: C4XH56 Putative uncharacterized protein; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="signal transduction protein" /protein_id="YP_003807942.1" /db_xref="GI:302343413" /db_xref="GeneID:9494452" /translation="MSLDDHRRAVAHDYLLEALGCAPDQLPTLPDVAIRVAQLAGGDE HSAANLAREVGRDQSLAGKVLAAANSPLHGCRGRVDDLSRAVVILGFDQLRALALGLA AFEAAGVARPMRRRMRRLDLWAHARRAAVLCEALARHELGLGPGYYAHGLLHDIGKVA LDAHRPADYEKAMDLAGRHGLPALLAERMTMGLDHAQVGQALLSYWDFPPAMTRAVGL HHQPWTDDGDGVAAGVVFLADLLAGAENGPGLPRRLELTPPAAEFVAGMGWVVNEITL ERLDDRLRALGEELDPLAG" misc_feature complement(2200773..2201600) /locus_tag="Deba_1983" /note="Predicted signal transduction protein [Signal transduction mechanisms]; Region: COG1639" /db_xref="CDD:31826" misc_feature complement(2200977..2201567) /locus_tag="Deba_1983" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(2201642..2202559) /locus_tag="Deba_1984" /db_xref="GeneID:9494453" CDS complement(2201642..2202559) /locus_tag="Deba_1984" /note="COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: rfr:Rfer_0801 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Q220K2 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain" /codon_start=1 /transl_table=11 /product="Type II secretion system F domain protein" /protein_id="YP_003807943.1" /db_xref="GI:302343414" /db_xref="GeneID:9494453" /translation="MDNLFIISISGATGLAVLLAFWACRTLGGGPDPARRRLDELLAR NAPPRPAPAIKKRLLGAVKALAPKSERGQGWEKSKLRQDLLTAGFRSVEALNVFTGVR LAAAFLLPAIVFALGVLIQAKRPAMVISTLIAAALGYLGPGYVLEKLALRRSALIARQ MPSMLDLLVIAVESGLGLDAAVQRVSRDLAASSPVLAHELAIFSLELKLGAARGDALR NLAKRCGVDEMAGLVAMLIQADRFGVSIGRSIRVFADDLRTKRRQKLEEQAAKIPLKL LFPVLFLIFPAIMAVMAGPAVINIVEKMF" misc_feature complement(2201645..2202400) /locus_tag="Deba_1984" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene complement(2202563..2203531) /locus_tag="Deba_1985" /db_xref="GeneID:9494454" CDS complement(2202563..2203531) /locus_tag="Deba_1985" /note="COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: pol:Bpro_2556 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: B7WWM6 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain" /codon_start=1 /transl_table=11 /product="Type II secretion system F domain protein" /protein_id="YP_003807944.1" /db_xref="GI:302343415" /db_xref="GeneID:9494454" /translation="MSWLIGAAVFFSVICLALGLRYLLSPAGEAPSQAARRRLRRLGA ENTPPDSQLEALLRVTSYSEISFLDRLIARAPRLLRLQDLLDKAGNPINLGTLVLLCG VLAVAGALLGLGLALGYLSLGLALGLGYLPLMAVSKIKAKRLSVFESQFPEAVELVGR ALRAGHSFSAGLRMVGEELGEPVASEFNKTFEDYSFGKTMEEALTGLVRRVELEDVKF FASAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVRALSAEGRLSGWILSLMPPALF AMLYWSTPEYINMALGNPIGQTILLSGACLEVLGIVVIKQIIKMRV" misc_feature complement(2202566..>2203132) /locus_tag="Deba_1985" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene complement(2203528..2204898) /locus_tag="Deba_1986" /db_xref="GeneID:9494455" CDS complement(2203528..2204898) /locus_tag="Deba_1986" /note="COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR017975:IPR001482; KEGG: dde:Dde_2363 type II/IV secretion system protein; PFAM: type II secretion system protein E; SPTR: Q30YT6 Type II/IV secretion system protein; PFAM: Type II/IV secretion system protein" /codon_start=1 /transl_table=11 /product="type II secretion system protein E" /protein_id="YP_003807945.1" /db_xref="GI:302343416" /db_xref="GeneID:9494455" /translation="MSLRQRLGKGPGGQTPASCQQPEDDARQAAFQELKGRMHYKVID KVDLAQISQAADGSMDKELEGAIAQVLEGESVQLAPDERARLIIEIKDEVMGLGPLEP LLADESVSEIMCNGYNRVYVERCGRLTKATARFRDDAHLLKIIDKIATKVGRRIDESS PMVDARLADGSRVNAIIPPLALDGPSLTIRKFAKDPLTVADLIRYGSITPELAQVIKG VVTARLNVVISGGTGSGKTTLLNVFSSFIPFGERIVTIEDSAELQLQQEHVVRLETRP PNIEGVGQVTMRDLVRNCLRMRPDRIVVGECRGGEALDMMQAMSTGHDGSLTTIHANS PRDCVSRMETLVSMGGLDISERAIRRQIASAVEVIVQVARLSDGSRKVISFSEITGME GDMVTMQEIFKFQQSGVDEKGKVIGHFGPTGIRPSFSEKLKSHGVDLDSGLFGGERRL GLGANL" misc_feature complement(2203669..2204727) /locus_tag="Deba_1986" /note="Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]; Region: CpaF; COG4962" /db_xref="CDD:34569" misc_feature complement(2203747..2204304) /locus_tag="Deba_1986" /note="Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial...; Region: VirB11-like_ATPase; cd01130" /db_xref="CDD:29996" misc_feature complement(order(2203768..2203770,2204185..2204202, 2204293..2204295)) /locus_tag="Deba_1986" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29996" misc_feature complement(order(2204188..2204196,2204206..2204211)) /locus_tag="Deba_1986" /note="Walker A motif; other site" /db_xref="CDD:29996" misc_feature complement(order(2203777..2203779,2203879..2203881, 2203888..2203890,2203900..2203908,2203936..2203941, 2203948..2203950,2203960..2203962,2203999..2204001, 2204005..2204013,2204080..2204085,2204089..2204100, 2204119..2204121,2204143..2204145,2204200..2204205)) /locus_tag="Deba_1986" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:29996" misc_feature complement(2203981..2203998) /locus_tag="Deba_1986" /note="Walker B motif; other site" /db_xref="CDD:29996" gene complement(2204895..2206040) /locus_tag="Deba_1987" /db_xref="GeneID:9494456" CDS complement(2204895..2206040) /locus_tag="Deba_1987" /note="COGs: COG4963 Flp pilus assembly protein ATPase CpaE; KEGG: pol:Bpro_2554 response regulator receiver domain-containing protein; SPTR: Q12AH2 Response regulator receiver domain protein (CheY-like); PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain" /codon_start=1 /transl_table=11 /product="Flp pilus assembly protein ATPase CpaE" /protein_id="YP_003807946.1" /db_xref="GI:302343417" /db_xref="GeneID:9494456" /translation="MDSAPSRLLALHFDKRMGELIDKLAAGAPFVQLVGNVASVQDLE RIAAMARPDVILLEHPPEGDGFAAVVQRIQLLLPLTPLICLAAEKNPDQIMAALRLGL REYLVDERRLGDSFKEAMFRLRAAGQNLGPDAKGRIIGVMGAKGGVGVSHLAINLAWA ISQEQGLRVALVDLDLFGGNEAFMLDQEVKRNFSDAAAMQERLDAAAMEGLLHEVAPG LRLLAAPDDPADAEMINAEHVSSVLDVLARGYAVVVVDLGDSLAETTLTALDQAEMAL LLLEPSLVGLKSAARVCWLSRRLGHGDGKLRPVVNRHDARRAIAGREIEAVLNRKVLA WLPNEHDVITQAANAGQPALSLRPKAKWCKAVAFLARQLLESPGEKP" misc_feature complement(2204922..>2205650) /locus_tag="Deba_1987" /note="Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]; Region: CpaE; COG4963" /db_xref="CDD:34570" misc_feature complement(<2205483..2205629) /locus_tag="Deba_1987" /note="This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly...; Region: CpaE_like; cd03111" /db_xref="CDD:73340" misc_feature complement(2205105..>2205305) /locus_tag="Deba_1987" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene complement(2206051..2207079) /locus_tag="Deba_1988" /db_xref="GeneID:9494457" CDS complement(2206051..2207079) /locus_tag="Deba_1988" /note="KEGG: dps:DP1532 hypothetical protein; SPTR: Q6AN13 Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2134)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807947.1" /db_xref="GI:302343418" /db_xref="GeneID:9494457" /translation="MRWRFRLGRFWRDDRAAVAVVAALALMAMVALVGAAVDLGVVYA GKAELQNAADAAATAGAAELLSDPDGDGVAQTDYDGARQSAIDFVESNQLLTTPLVWN EEGDLVEAGQWSFDSNDFAQTGPSADPADLDAVRVAISRPVQTFFARAVGLGQVMVGA VSVGYLGCAGDGGQADLPLAINAAVLDGLGPDSDIVLNSENAENGQWTSFDVWPTNTN SIGNFLDNPEQIPRLNIGDSIYMNNGEIANLFGRLETLFNQSKDAAGQWPVLLPVVQW TSPQNQGVLVGFVHFVITEVRGPGGPASESKRIIGYWENDAAMVAPGARSGGACYGAR ASRAALVE" misc_feature complement(2206591..>2206758) /locus_tag="Deba_1988" /note="Predicted membrane protein (DUF2134); Region: DUF2134; pfam09977" /db_xref="CDD:192436" gene complement(2207063..2208463) /locus_tag="Deba_1989" /db_xref="GeneID:9494458" CDS complement(2207063..2208463) /locus_tag="Deba_1989" /note="COGs: COG4964 Flp pilus assembly protein secretin CpaC; InterPro IPR001775:IPR007055:IPR004846; KEGG: dvl:Dvul_1112 type II and III secretion system protein; PFAM: type II and III secretion system protein; transport-associated; SPTR: Q72A78 Type II/III secretion system protein; PFAM: Putative phospholipid-binding domain; Bacterial type II and III secretion system protein" /codon_start=1 /transl_table=11 /product="type II and III secretion system protein" /protein_id="YP_003807948.1" /db_xref="GI:302343419" /db_xref="GeneID:9494458" /translation="MSGFCRLAVAALIVAFAVATPASARAEARTGRLEVAAGHSRLVD LPAPLKRVSVADETVADVLVINPRQIYVNGRKPGNTNITVWDRAERVIAAYAVGVGRD YTRLKAAFARVLPGEAIEVHELEGALVLAGSVSSESAREKAESIARLFEKERVSNLLE VVDQKQVLLKLRFAEVNRQAAKRMNVNLGYWDPARPGNIFFTFLDNMTGPPSIDYSKG SIEFDLSANVGAWGGLNDSGRQYMAFLDILKQNGLAKILAEPNLVCVSGKKANFLAGG EFPIPVPGRDYTAIVFKKYGVQLTFLPKVLPNGKISLEVEPEVSELDYSPGVVTDGFV VPGLTTRRASTQLELGDGQGFAIAGLLKQDVTRSVSKWPFLGDLPILGALFRSSQYRN RETELLIVVTPHIVRPGDKTPDPLIGPRDFDDPDDMDFYLWGKTGGDDEPPGRAGAKA ERSMEMEGRFGHEVAF" misc_feature complement(2207975..2208154) /locus_tag="Deba_1989" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" misc_feature complement(2207243..2207722) /locus_tag="Deba_1989" /note="Bacterial type II and III secretion system protein; Region: Secretin; cl02829" /db_xref="CDD:164025" gene complement(2208460..2209299) /locus_tag="Deba_1990" /db_xref="GeneID:9494459" CDS complement(2208460..2209299) /locus_tag="Deba_1990" /note="COGs: COG3745 Flp pilus assembly protein CpaB; InterPro IPR013974:IPR017592; KEGG: ctt:CtCNB1_2104 pilus assembly transmembrane protein; PFAM: SAF domain protein; SPTR: B7WWL6 Flp pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB" /codon_start=1 /transl_table=11 /product="Flp pilus assembly protein CpaB" /protein_id="YP_003807949.1" /db_xref="GI:302343420" /db_xref="GeneID:9494459" /translation="MPPRKLMAPLLFAAAVLLAVAAAFGAKYYVAHKAQQEAERRVRT APLVVAAVDLPAGLELSAGRLAVAQWPVEARPPGHFGAVKPLLGRVLQQPVVKGEPLL AGKLSPEGAAAGLAAAIKPGWRAVTISADEVVGVAGYLKVGDRVDVIATVKGLDQGKE AVARLALQDLEVLAVSHQAEQDGKKPPKLKGQVLTLLARPADAERLALAAGEGKILLA LRNRQDRQPALTRGARLGAMVAPPPAPAAKAEKCAAPRPSPPAPTVELIKGVTRARQE LKP" misc_feature complement(2208601..2209131) /locus_tag="Deba_1990" /note="SAF domain; Region: SAF; cl00555" /db_xref="CDD:193866" gene complement(2209310..2209726) /locus_tag="Deba_1991" /db_xref="GeneID:9494460" CDS complement(2209310..2209726) /locus_tag="Deba_1991" /note="InterPro IPR012495; KEGG: bph:Bphy_5858 TadE family protein; PFAM: TadE family protein; SPTR: B2JVE5 TadE family protein; PFAM: TadE-like protein" /codon_start=1 /transl_table=11 /product="TadE family protein" /protein_id="YP_003807950.1" /db_xref="GI:302343421" /db_xref="GeneID:9494460" /translation="MRPFRRLAADGRGSVAVEFALFLPVFLLVIFSIIELGAAWYQKQ MLVNASREGARLGALFSTSGGLTAQEVQERVNQYLSDSGFPSQAVVQAVGVDGASGDP VTVNVSADYEFPVLSAFIGAVPGTISLSATTVMRHE" misc_feature complement(2209562..2209690) /locus_tag="Deba_1991" /note="TadE-like protein; Region: TadE; pfam07811" /db_xref="CDD:191859" gene complement(2209723..2210283) /locus_tag="Deba_1992" /db_xref="GeneID:9494461" CDS complement(2209723..2210283) /locus_tag="Deba_1992" /note="InterPro IPR000045; KEGG: aca:ACP_1104 type IV prepilin leader peptidase family protein; PFAM: peptidase A24A prepilin type IV; SPTR: C1F476 Type IV prepilin leader peptidase family protein; PFAM: Type IV leader peptidase family" /codon_start=1 /transl_table=11 /product="peptidase A24A prepilin type IV" /protein_id="YP_003807951.1" /db_xref="GI:302343422" /db_xref="GeneID:9494461" /translation="MNSWRTMERQGAAAMVARELEGAYWGLLPAFLCWPLLAMQTSLG PAPATMTLMASLMAGHDVVDRRIPNALTALTAVVGLALSGLLGGWAGLGWSALGGLLV LGLTTVFFLMGALGGGDVKALAALATFVGPASAAWLLLLTALAGGALALGLLIAGRRW PASFAPTMPYGLAIWCGVVLLWAVRP" gene complement(2210307..2210480) /locus_tag="Deba_1993" /db_xref="GeneID:9494462" CDS complement(2210307..2210480) /locus_tag="Deba_1993" /note="KEGG: ade:Adeh_2831 Flp/Fap pilin component; SPTR: Q2ILS4 Flp/Fap pilin component; PFAM: Flp/Fap pilin component" /codon_start=1 /transl_table=11 /product="Flp/Fap pilin component" /protein_id="YP_003807952.1" /db_xref="GI:302343423" /db_xref="GeneID:9494462" /translation="MKLFQNIKRLFKDEQGISAVEYALLLALIGGGIATAAFLLGDQV ETNITTATGNLSQ" gene complement(2210716..2212098) /locus_tag="Deba_1994" /db_xref="GeneID:9494463" CDS complement(2210716..2212098) /locus_tag="Deba_1994" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078:IPR020441:IPR001789:IPR003593:IPR 002197:IPR011006:IPR009057; KEGG: sfu:Sfum_3765 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: A0LPT2 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003807953.1" /db_xref="GI:302343424" /db_xref="GeneID:9494463" /translation="MGPKNCILVVEDDRQSRIMVRQALALDGHEVIEAADGDSAMALL RRQGFQLVLTDLRLPGAGGLEILGYITENMPGTPVIVMSGFGSIDLAVEAMRRGAYDF QEKPLNTDHLRMTVDRALHKAALSHAYDYLRREQPYIYKFDQIVAESAVMKDLLRQAA KLAGSDITVLLTGETGTGKSLIAGGIHANSPRAEHTLVTVNCAALPETLLESELFGHE KGAFTGADKARVGRIQQAHGGTLFLDEVGDMSPVIQAKLLRALEDKIIQPLGSSRSIK VDVRVISATNVDLVQAVADGRFREDLFYRLGVTTLEAPPLRQRREDILPLAERFIHQI CGDSKRPHKELDQGAADALLAHNWPGNVRELRNALERAVLLSEGPKLTRRDLNLGSHG NRLGDSPGASRGFDLEKLERETIVAALRAAGWVQARAAELLGISPRALNYKLQKLAIS HPELDARRRR" misc_feature complement(2210728..2212098) /locus_tag="Deba_1994" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature complement(2211739..2212077) /locus_tag="Deba_1994" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2211781..2211786,2211793..2211795, 2211850..2211852,2211910..2211912,2211934..2211936, 2212063..2212068)) /locus_tag="Deba_1994" /note="active site" /db_xref="CDD:29071" misc_feature complement(2211934..2211936) /locus_tag="Deba_1994" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2211910..2211918,2211922..2211927)) /locus_tag="Deba_1994" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2211778..2211786) /locus_tag="Deba_1994" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2211178..2211645) /locus_tag="Deba_1994" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2211559..2211582) /locus_tag="Deba_1994" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2211241..2211243,2211367..2211369, 2211556..2211579)) /locus_tag="Deba_1994" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2211364..2211381) /locus_tag="Deba_1994" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2211184..2211186) /locus_tag="Deba_1994" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(2210758..2210880) /locus_tag="Deba_1994" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(2212125..2214668) /locus_tag="Deba_1995" /db_xref="GeneID:9494464" CDS complement(2212125..2214668) /locus_tag="Deba_1995" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR018247:IPR004358:IPR001789:IPR000014:IPR 001610:IPR003661:IPR003594:IPR013656:IPR013655:IPR011006:I PR009082:IPR005467:IPR000700; KEGG: sfu:Sfum_2943 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; PAC repeat-containing protein; SPTR: A0LMG5 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_003807954.1" /db_xref="GI:302343425" /db_xref="GeneID:9494464" /translation="MNDSAEKAVRVLVVDDEPAILAAFGEVLRPKTASAEGAAQRMRD LERTLFGDGESETGPLVELTALNQAEPAVEAVAQAVAQGRPFAVAFVDVRMPPGPDGV WAVKEMRARDQALEIVVMTAYSDVPPGRIAQMAPPPSKLLYMQKPFHAHELRQLVASL SDKWRSQRELERTQRELERRVEERTAQLAQANASLREEIERRRANQAELARSEQNLRL ILDCLPVGLMITDSAGKVLRVNAAALKLSGHAHENDLLGRHCREIIAEHEQSPWPPSA EPGPSQPCESTLMRLSGEGLPVLVSAIALKLDGQDVLLQAIADLSERKNWERALNESE ARYRQLVEFAPAGIYEFDFSASRFLSVNEVMLEYTGYDRDEFLALRPEKLLTPESLRD YLGQQKQLLAGDISSQTNEYQFYTKSGRTMWALVNANFVFDGQGRLVGRVVANDITAR KQAEQDKVLMESRIRQAQKMEALGSLAGGVAHDFNNILNAVIGFTELTLRELGEQETP KAYLKHVLQAGRRASELVRQILTFSRGGEPEKKPIHVAIVVKEVLKLLRASLPAGIEI KQNIQNADELVLADPSQIHQVMMNLCANAAQAMGESGLLTVELRKVTLGRPLELDMAS LPPGPYVQLVVADNGPGVEPAHIGRIFEPYFSTKSASGGTGLGLAVVHGIVKGLDGAI DVKSAPGAGCQFRVFLPIPGLAADDDQETPNHLPMGHETILLVDDEPELVRLGLGVLE VLGYRVESATDPEEALRMFLAEPARYDLLLTDQTMPKMTGLELIERVRARRGGLPVVL CTGYGEQVARILAQRGENVRLAQKPVLMAELAQAVRLALDETGPERREQ" misc_feature complement(<2214195..2214641) /locus_tag="Deba_1995" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature complement(2214189..>2214416) /locus_tag="Deba_1995" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2214228..2214233,2214240..2214242, 2214306..2214308,2214366..2214368,2214393..2214395)) /locus_tag="Deba_1995" /note="active site" /db_xref="CDD:29071" misc_feature complement(2214393..2214395) /locus_tag="Deba_1995" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2214366..2214374,2214381..2214386)) /locus_tag="Deba_1995" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2214225..2214233) /locus_tag="Deba_1995" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(<2213871..2214029) /locus_tag="Deba_1995" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(2212569..2214023) /locus_tag="Deba_1995" /note="nitrogen fixation negative regulator NifL; Region: nifL_nitrog; TIGR02938" /db_xref="CDD:131984" misc_feature complement(2213328..2213639) /locus_tag="Deba_1995" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(2213412..2213414,2213427..2213429, 2213505..2213516,2213556..2213558,2213574..2213576, 2213586..2213588)) /locus_tag="Deba_1995" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(2213385..2213387,2213391..2213393, 2213475..2213480,2213487..2213489,2213511..2213513, 2213523..2213525)) /locus_tag="Deba_1995" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(2213067..2213261) /locus_tag="Deba_1995" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2213082..2213084,2213094..2213096, 2213103..2213105,2213115..2213117,2213124..2213126, 2213136..2213138,2213187..2213189,2213196..2213198, 2213208..2213210,2213217..2213219,2213229..2213231, 2213241..2213243)) /locus_tag="Deba_1995" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2213223..2213225) /locus_tag="Deba_1995" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2212575..2212919) /locus_tag="Deba_1995" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2212587..2212589,2212593..2212598, 2212611..2212613,2212617..2212619,2212665..2212676, 2212743..2212748,2212752..2212754,2212758..2212760, 2212764..2212766,2212878..2212880,2212887..2212889, 2212899..2212901)) /locus_tag="Deba_1995" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2212887..2212889) /locus_tag="Deba_1995" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2212668..2212670,2212674..2212676, 2212746..2212748,2212752..2212754)) /locus_tag="Deba_1995" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(2212167..2212505) /locus_tag="Deba_1995" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(2212158..2212502) /locus_tag="Deba_1995" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2212200..2212205,2212212..2212214, 2212269..2212271,2212329..2212331,2212353..2212355, 2212488..2212493)) /locus_tag="Deba_1995" /note="active site" /db_xref="CDD:29071" misc_feature complement(2212353..2212355) /locus_tag="Deba_1995" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2212329..2212337,2212341..2212346)) /locus_tag="Deba_1995" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2212197..2212205) /locus_tag="Deba_1995" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(2214665..2216545) /locus_tag="Deba_1996" /db_xref="GeneID:9494465" CDS complement(2214665..2216545) /locus_tag="Deba_1996" /note="COGs: COG3322 periplasmic ligand-binding sensor domain; InterProIPR004358:IPR003660:IPR003594:IPR007892:IPR 005467; KEGG: dba:Dbac_3141 diguanylate cyclase; PFAM: CHASE4 domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SPTR: C5S8H6 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; CHASE4 domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_003807955.1" /db_xref="GI:302343426" /db_xref="GeneID:9494465" /translation="MSLRLKIILILVAVFAVYAAIDVAVLRLAILPEFEALELREAID DMERVESVLRREESQLAAFCMDWSFWDDSYAFVADRNSQFIASNITDSTFLDNKLNLI YYLAADGAVAYGAAHLLPSMRPARIDDIGPEGPRGPLRAIFRQRLEQGFSGLWLSGHG PIMLTFQPILTSKKQGPVRGMVVMGRFLNKDMLAALAEQTKVRARFWPLDGVTEKDKL IAGDLAVLRRDGGKLTRRLADGSIEVLSLLAGLDGRPVLLARTVNKRGIIEQGAAAVG YALASTLAAVVIMLALLLVLLNRTVVSPLARLTAHMVDLGQTDDLSKRLRLKRDDELG AMANEFDRLAQRLLEARQSLVEKSYVSGQADMTAGVLHNVGNALAPLLFGLNQSLDGL RAMPLGNMARAAGQLAEDGLEPARRGQLLEYLSLAQDDVRQCVAALEADLQTVLAGVG RLERILKEATDVRRAERPLEPVWLDHLTREAFSMVAPGLQSRFALRLGPGLERVGAIR AHRMPLLQIMGNLLTNAAEAIARGGATGTVTVDADREEHERGPLVHLRVSDDGAGIAA DQLDLIFQRGFSGKGAGGSGLGLHWSANAAMSLGGRLYAHSEGPGQGATFHLLLPAGE SS" misc_feature complement(2215916..2216371) /locus_tag="Deba_1996" /note="CHASE4 domain; Region: CHASE4; cl01308" /db_xref="CDD:154325" misc_feature complement(2215490..2215651) /locus_tag="Deba_1996" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(2214674..>2215555) /locus_tag="Deba_1996" /note="Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]; Region: COG4191" /db_xref="CDD:33926" misc_feature complement(2214686..2215006) /locus_tag="Deba_1996" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2214698..2214700,2214704..2214709, 2214725..2214727,2214731..2214733,2214779..2214790, 2214854..2214859,2214863..2214865,2214869..2214871, 2214875..2214877,2214965..2214967,2214974..2214976, 2214986..2214988)) /locus_tag="Deba_1996" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2214974..2214976) /locus_tag="Deba_1996" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2214782..2214784,2214788..2214790, 2214857..2214859,2214863..2214865)) /locus_tag="Deba_1996" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2216643..2217074) /locus_tag="Deba_1997" /db_xref="GeneID:9494466" CDS complement(2216643..2217074) /locus_tag="Deba_1997" /note="COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: ppd:Ppro_1137 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: A1AN41 Uncharacterized domain 1; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_003807956.1" /db_xref="GI:302343427" /db_xref="GeneID:9494466" /translation="MGMNGMDMLRAVEDGQLKPPPIFALMGITMSRCGDGWAELELEV GGRHHNSMGMAHGGVVATLGDAVMGTALITTLREGELFTTLELHTNYIRPARDGKLSA KGQVVRRGRSTAYCEAEIKDAQGRLVAKLSSACLIQQGQWS" misc_feature complement(2216664..2217002) /locus_tag="Deba_1997" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature complement(order(2216793..2216804,2216823..2216825, 2216910..2216912)) /locus_tag="Deba_1997" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(2216802..2216804,2216808..2216822, 2216892..2216894,2216901..2216903,2216907..2216909)) /locus_tag="Deba_1997" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(2216823..2216825,2216865..2216870, 2216877..2216882,2216904..2216906)) /locus_tag="Deba_1997" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(2217189..2218457) /locus_tag="Deba_1998" /db_xref="GeneID:9494467" CDS complement(2217189..2218457) /locus_tag="Deba_1998" /EC_number="4.2.1.11" /note="COGs: COG0148 Enolase; InterPro IPR020809:IPR000941:IPR020811:IPR020810; KEGG: drm:Dred_2987 phosphopyruvate hydratase; PFAM: Enolase-like; PRIAM: phosphopyruvate hydratase; SPTR: A4J8T7 Enolase; TIGRFAM: enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase" /codon_start=1 /transl_table=11 /product="enolase" /protein_id="YP_003807957.1" /db_xref="GI:302343428" /db_xref="GeneID:9494467" /translation="MLAIEKIVAREILDSRGNPTIECEVMLEDGSLGTAAVPSGASTG EHEALELRDGDKSRYLGKGVRKAVLNVHEVIAPELLGMDGLDQVLIDKTMLDLDGTPN KAKLGANAILGVSMATARAAAQALLVPLYRYLGGAYAHVLPMPMMNIINGGAHAPNNL DIQEFMIVPTGGETFGEALRMGAEVFHNLKKVLSGRGMVTSVGDEGGFAPNLATNEEA LQVIIEAIEKAGYTPGDDVAIALDSAASEFYRDGKYVFHKSDGKQRSVEDLIELYASW VDKYPIVSIEDGLAEDDWEGWRKVTAALGKRIQLVGDDLFVTNPERLAIGIEQGSANS ILIKLNQIGTVTETLAAIDLAKRNGFTQVVSHRSGETEDSFIADLAVAVSCGQIKTGS LCRSERICKYNRLLRIEEELGETAVLGKPF" misc_feature complement(2217207..2218457) /locus_tag="Deba_1998" /note="enolase; Provisional; Region: eno; PRK00077" /db_xref="CDD:178845" misc_feature complement(2217225..2218442) /locus_tag="Deba_1998" /note="Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313" /db_xref="CDD:48188" misc_feature complement(order(2217228..2217230,2217237..2217242, 2217249..2217251,2217258..2217263,2217267..2217275, 2217342..2217350,2217825..2217827,2217831..2217833, 2217852..2217857,2217894..2217899,2217906..2217911, 2217918..2217923,2217984..2217992,2218356..2218358, 2218392..2218394,2218404..2218430,2218434..2218436)) /locus_tag="Deba_1998" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48188" misc_feature complement(order(2217519..2217521,2217600..2217602, 2217732..2217734,2218332..2218334)) /locus_tag="Deba_1998" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:48188" misc_feature complement(order(2217291..2217293,2217354..2217362, 2217444..2217446,2217843..2217845,2217993..2217995)) /locus_tag="Deba_1998" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:48188" gene complement(2218626..2220377) /locus_tag="Deba_1999" /db_xref="GeneID:9494468" CDS complement(2218626..2220377) /locus_tag="Deba_1999" /note="COGs: COG1944 conserved hypothetical protein; InterProIPR019734:IPR003776:IPR001440:IPR013105:IPR 013026:IPR011990; KEGG: dol:Dole_1241 hypothetical protein; PFAM: protein of unknown function DUF181; hypothetical protein; hypothetical protein; SPTR: A8ZY40 Putative uncharacterized protein; PFAM: YcaO-like family; Tetratricopeptide repeat; TIGRFAM: uncharacterized domain; bacteriocin biosynthesis docking scaffold, SagD family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807958.1" /db_xref="GI:302343429" /db_xref="GeneID:9494468" /translation="MIQTPNKSGLRLGRAPKAYVGEQDKTRPPAQTVAWARERLAALG QDVLRQTKRIDTGRLGVPVFISLCGDAATMLTGTKKQMGKGASPEQAEASALMELAER FSFFHFMASADLPWATASQIEDGPVMDFAQAAKAVGHPAHDLARARAVYELLPQQWAW AHNLAAGRDELVPLSWFYAINEYNGPAAGNCLEEAVLQSLCEVIERHVCALVSQHRLA TPAIDPASIVDPISLELLAKFKNAGVEVFLKDFTCDMGAPTVAALCYDPATFPKDSEI VYAAGTAPDPEKALIRALTEVAQLAGDFHTGSSYKVSALPKFANLEEAAYVTRAGGTV SLGQLPDLRRDDLGAEVAACVAALDQRGYTVYSLDVTHPTLQVPAVYTIVPGAHFAQR TFDVDVYFHAAKLAAQLPDAAQALDVLEQMAAIAGHSHATHFFRAVALLELGLAEEAL NALDTALGLNPPPRDEASMHTQRGVAFKDLERYDLALEALAKAASFPEPHHEVFNLMG FCLFRQKRHMEAIAAFERAIEIEPGAAINYANIGANMRELGRLEEACRMYEHALELDP GLDFARQSLERLRAMLA" misc_feature complement(2219217..2220305) /locus_tag="Deba_1999" /note="putative methanogenesis marker protein 1; Region: methan_mark_1; TIGR03266" /db_xref="CDD:132310" misc_feature complement(2219211..2220137) /locus_tag="Deba_1999" /note="YcaO-like family; Region: YcaO; cl09146" /db_xref="CDD:195805" misc_feature complement(2218680..2218964) /locus_tag="Deba_1999" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2218734..2218739,2218746..2218751, 2218758..2218763,2218839..2218844,2218851..2218856, 2218860..2218865,2218950..2218955,2218962..2218964)) /locus_tag="Deba_1999" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(2218695..2218697,2218704..2218706, 2218716..2218718,2218752..2218754,2218797..2218799, 2218806..2218808,2218818..2218820,2218854..2218856, 2218899..2218901,2218908..2218910,2218920..2218922, 2218956..2218958)) /locus_tag="Deba_1999" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(2220494..2220811) /locus_tag="Deba_2000" /db_xref="GeneID:9494469" CDS complement(2220494..2220811) /locus_tag="Deba_2000" /EC_number="1.8.99.3" /note="COGs: COG2920 Dissimilatory sulfite reductase (desulfoviridin) subunit gamma; InterPro IPR007453; KEGG: drt:Dret_1739 sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; PRIAM: Hydrogensulfite reductase; SPTR: C0GTM7 Sulfur relay protein, TusE/DsrC/DsvC family; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC like protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family" /codon_start=1 /transl_table=11 /product="sulfur relay protein, TusE/DsrC/DsvC family" /protein_id="YP_003807959.1" /db_xref="GI:302343430" /db_xref="GeneID:9494469" /translation="MPTVTFKGKTYEVDEDGFLQDPESWDEDFAYYVKEEEGISELTD EHWKVIRYLQEYYKKNGIAPMVRIMTKVTGYKLKQIYELFPSGPGKGACKMAGLAKPT GCV" misc_feature complement(2220497..2220805) /locus_tag="Deba_2000" /note="DsrC like protein; Region: DsrC; cl01101" /db_xref="CDD:186334" gene complement(2221068..2223713) /locus_tag="Deba_2001" /db_xref="GeneID:9494470" CDS complement(2221068..2223713) /locus_tag="Deba_2001" /EC_number="6.1.1.9" /note="COGs: COG0525 Valyl-tRNA synthetase; InterProIPR001412:IPR019754:IPR002300:IPR013155:IPR 019499:IPR009080:IPR009008:IPR010978:IPR014729:IPR011321:I PR002303; KEGG: gsu:GSU2045 valyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SPTR: Q74BJ6 Valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="valyl-tRNA synthetase" /protein_id="YP_003807960.1" /db_xref="GI:302343431" /db_xref="GeneID:9494470" /translation="MDAGKLAKSYEPREVEARWYEYWQENGLFRADPQSAAPAYSIVI PPPNVTGQLHIGHALNNTLQDILCRFKRMNGWEVLWMPGTDHAGIATQNVVERQLAQE GLNRHDLGREKFIERVWRWRAESGGQIINQLKRLGASCDWSRERFTMDEGLSRAVREV FVRLYEEGLIYRGDYIINWCPRCHTALSDLESEHEETKGGLYHIRYPFRNGKGYLVVA TTRPETMLGDTAVAVNPADPRYQDLADDVVVLPLVNREIPVIRDSYVATDFGTGALKV TPAHDPNDFMIGRKHGLPSIKVMDDDARINELGGPYQGLDRFAAREKVLADLEALGLL ERRDEHMHNVGHCYRCHTMVEPILSKQWFVKVGPLAEEALKAVQDGRTRIVPEVWTKT YYDWMTGIRDWCISRQIWWGHRIPAWYCQCGQVIVSRQDPTVCPACGADQLRRESDVL DTWFSSALWPFSTMGWPDQTAELKKFYPTSCLVTAFDILFFWVARMMMMGLKFMGEAP FKDVYIHALVRDEHGQKMSKSKGNVIDPLVVMDQFGTDAVRFTLAAFAAQGRDVKLSE ERIAGYRNFVNKIWNAARFTLMHLEGDHQRPEGLEPLLEDRWILSRVGRVADEAALAI DEYRFNDAAGAVYQFAWHEFCDWYLELIKGPLYNDADPARQAATRATLRQVFSRLIRL LHPFMPFVTEELWQRLPGAEGSVMKAVWPKARPDELDEAAEADMRLVMDVISGVRNIR GEMGISPAKAVPLVLAAPEPATRAMLEAQRGSIVGLAKISELGWLGEGGAPQKAASIA LPGVTLYVPLEGLVDFAAEEARLRKELAKLEKEVGPSRKKLLNDGFLAKAPLEVVDKE KAKVAELESKMIRLQANLERIRGFI" misc_feature complement(2221077..2223698) /locus_tag="Deba_2001" /note="valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729" /db_xref="CDD:180225" misc_feature complement(<2223141..2223602) /locus_tag="Deba_2001" /note="catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817" /db_xref="CDD:185677" misc_feature complement(2223543..2223554) /locus_tag="Deba_2001" /note="HIGH motif; other site" /db_xref="CDD:185677" misc_feature complement(2222022..>2222675) /locus_tag="Deba_2001" /note="catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817" /db_xref="CDD:185677" misc_feature complement(order(2222136..2222138,2222160..2222171, 2222238..2222240,2222250..2222255,2222259..2222264, 2222346..2222348,2222355..2222357)) /locus_tag="Deba_2001" /note="active site" /db_xref="CDD:185677" misc_feature complement(2222127..2222141) /locus_tag="Deba_2001" /note="KMSKS motif; other site" /db_xref="CDD:185677" misc_feature complement(2221620..2222024) /locus_tag="Deba_2001" /note="Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962" /db_xref="CDD:153416" misc_feature complement(order(2221755..2221757,2221764..2221769, 2221791..2221793,2221812..2221814,2221821..2221823, 2221959..2221964,2221968..2221973,2221980..2221985, 2221992..2221997,2222001..2222003,2222010..2222015, 2222019..2222021)) /locus_tag="Deba_2001" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153416" misc_feature complement(order(2221755..2221757,2221764..2221769, 2221779..2221781,2221959..2221964,2221968..2221973, 2221980..2221982)) /locus_tag="Deba_2001" /note="anticodon binding site; other site" /db_xref="CDD:153416" misc_feature complement(2221080..>2221208) /locus_tag="Deba_2001" /note="Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458" /db_xref="CDD:151031" gene complement(2223827..2225119) /locus_tag="Deba_2002" /db_xref="GeneID:9494471" CDS complement(2223827..2225119) /locus_tag="Deba_2002" /note="KEGG: dvu:DVU3172 hypothetical protein; SPTR: Q725K1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="CheA signal transduction histidine kinase" /protein_id="YP_003807961.1" /db_xref="GI:302343432" /db_xref="GeneID:9494471" /translation="MAAKAGPPPGAVIIDLVEEVADKPQAQAQAPLAGDDLDSLLAEL SGDAPAPKSSPAPAAAPAQDTGDDLDSLLAELGGDAAAPAEKPAPAPAAAAKSELGQD DLDALLGELDAAAPAEKPAPAPAAAAKSELGQDDLDALLGELDAAPPAEKPAPAPAAA AKSELGQDDLDALLGELDAAAPAEKPAPAPAAAAKSELGQDDLDALLGELDAAAPAEK PAPAPAAAAKSELGQDDLDALLDELDAAAPAEKPAPAPAAAAKSELGQDDLDSLLADL GANNQPSPEKPAPAPAAAPKPKAKAAPAPAADDDDDLDALLAELEKEPAPEPPQPAAA APRRPRQAVVAPPEKPAASSAALVGQAAAMIKDMGVDAAPLEPLEAAVIFERVAREML GKLIGEIVPKLVAEKVAAEIEAIKAEANAPDLDDEVVD" gene complement(2225167..2226039) /locus_tag="Deba_2003" /db_xref="GeneID:9494472" CDS complement(2225167..2226039) /locus_tag="Deba_2003" /EC_number="3.1.21.2" /note="COGs: COG0648 endonuclease IV; InterPro IPR018246:IPR001719:IPR012307:IPR013022; KEGG: aca:ACP_1118 deoxyribonuclease IV (phage-T(4)-induced); PFAM: xylose isomerase domain protein TIM barrel; PRIAM: Deoxyribonuclease IV (phage-T(4)-induced); SMART: AP endonuclease family 2; SPTR: C1F489 Deoxyribonuclease IV (Phage-T(4)-induced); TIGRFAM: apurinic endonuclease Apn1; PFAM: xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1)" /codon_start=1 /transl_table=11 /product="apurinic endonuclease Apn1" /protein_id="YP_003807962.1" /db_xref="GI:302343433" /db_xref="GeneID:9494472" /translation="MRIGLHLSTARDAANAVEMARRLGLDCLQIFAGSPRTWRRVAWS AEETARFRAGAALAGLDPVVIHAPYLINLAAADEALWSKSIEALTDQLRMAQAIGAAG VVVHPGSRGARPLDWGLERVAQGAARALAAAGGQSKVILENTCGAGGALGGRLEQLAA MLDLLGDAPCAVCLDTAHAWGAGYDISSADGAAAFVDQVDDVVGLESVLLWHFNDMKL PCGCGRDIHAHLGRGRIGRAGLAGLAQDPRLAAAAAVMETPKDSRWADRRNVLYLRRL VLGQAPGGLLTPTA" misc_feature complement(2225242..2226033) /locus_tag="Deba_2003" /note="AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-...; Region: AP2Ec; cd00019" /db_xref="CDD:28903" misc_feature complement(2225254..2226033) /locus_tag="Deba_2003" /note="AP endonuclease family 2; Region: AP2Ec; smart00518" /db_xref="CDD:128793" misc_feature complement(order(2225269..2225271,2225833..2225835, 2225947..2225949,2226022..2226024)) /locus_tag="Deba_2003" /note="AP (apurinic/apyrimidinic) site pocket; other site" /db_xref="CDD:28903" misc_feature complement(order(2225815..2225817,2225824..2225826, 2225830..2225835,2225926..2225940)) /locus_tag="Deba_2003" /note="DNA interaction; other site" /db_xref="CDD:28903" misc_feature complement(order(2225269..2225271,2225359..2225361, 2225365..2225367,2225404..2225406,2225506..2225508, 2225515..2225517,2225614..2225616,2225722..2225724, 2225842..2225844)) /locus_tag="Deba_2003" /note="Metal-binding active site; metal-binding site" /db_xref="CDD:28903" gene 2226172..2226375 /locus_tag="Deba_2004" /db_xref="GeneID:9494473" CDS 2226172..2226375 /locus_tag="Deba_2004" /note="InterPro IPR000428:IPR006121; KEGG: dal:Dalk_3004 heavy metal transport/detoxification protein; PFAM: heavy metal transport/detoxification protein; SPTR: B8FL59 heavy metal transport/detoxification protein; PFAM: heavy-metal-associated domain" /codon_start=1 /transl_table=11 /product="heavy metal transport/detoxification protein" /protein_id="YP_003807963.1" /db_xref="GI:302343434" /db_xref="GeneID:9494473" /translation="MNEKTVNIPSISCGHCLAAVKREAGEVKGVSSVEGDVSTKDVTI KWDAPATWEQIEAQLKDAGYPPQ" misc_feature 2226184..2226369 /locus_tag="Deba_2004" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature order(2226202..2226210,2226217..2226219) /locus_tag="Deba_2004" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" gene 2226393..2228846 /locus_tag="Deba_2005" /db_xref="GeneID:9494474" CDS 2226393..2228846 /locus_tag="Deba_2005" /note="COGs: COG2217 Cation transport ATPase; InterProIPR018303:IPR001757:IPR001877:IPR001756:IPR 006121:IPR008250:IPR005834:IPR006122:IPR006403:IPR006416; KEGG: dal:Dalk_3003 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; heavy metal transport/detoxification protein; haloacid dehalogenase; SPTR: B8FL58 heavy metal translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC" /codon_start=1 /transl_table=11 /product="copper-translocating P-type ATPase" /protein_id="YP_003807964.1" /db_xref="GI:302343435" /db_xref="GeneID:9494474" /translation="MAEKSIDMPVVGMTCARCAANVERVLAKKLPGVSLAEVNFAAET VHVVYDPEQVGPEQMAKAVEDAGYKLILPAPTRRVELPVVGMSCARCAANVERVLAKK TPGVSLAQVNFAAETVAVEYDPAQTSLERMAGAVREAGFELILPVDGEDQTDAEQQAR AQELAAQKRFFWVGVAFTLPLFILHMGHAFHVFGAWAVSPWAGWLSLALATPVQFYTG GGFYVGGWKSLRAGAANMDVLVALGASAAYFYSVAALIFPGLGHQLYFETSAMIITLI KLGKLLEAKAKGQAGAAIRKLMDLAPKMATLLGDDGAEKTVPAQSVRPGQVVLVRPGE AIPVDGVVVGGESAVNEALMTGESMPVDKKQGDQVYGATVNQQGMLKVRATGVGADTA LAQIIRLVRQAQGSKAPIQRLADKVAAVFVPAIICIALATLAAWWLIDGLFVPAMVRM TAVLVIACPCALGLATPTAIMVGSGKGATMGVLFKNSEALETAHRVSVVMFDKTGTIT KGQPRLTDWIALGDHGGEALTMAAAAENASEHPVAKAVASGARERGVAPPEAERFEAL AGFGVRAVVQGREVLVGKPSWIASQGLADAAVMAKVDELADQGKTVMIVVIEGKAAGL LAVADEEKPDAAKAIAKLKNMGLETIMLTGDNQRAAAAIAAKVGIQRVVAEVLPDKKE EAVRKAQADGRLVAMVGDGVNDAPALARADLGMAIGTGADVAMEASDVTLVGGDLAGV PRSIALSRATMRTIRQNLFWAFFYNVLLVPIAAGAAQPLTWLPDFIRNLHPAMAAGAM AFSSVTVVFNSLRLGRRRL" misc_feature 2226411..2226599 /locus_tag="Deba_2005" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature order(2226429..2226437,2226444..2226446) /locus_tag="Deba_2005" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature 2226618..2228834 /locus_tag="Deba_2005" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature 2226630..2226818 /locus_tag="Deba_2005" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature order(2226648..2226656,2226663..2226665) /locus_tag="Deba_2005" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature 2227272..2227868 /locus_tag="Deba_2005" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature 2228247..2228588 /locus_tag="Deba_2005" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 2228868..2229308 /locus_tag="Deba_2006" /db_xref="GeneID:9494475" CDS 2228868..2229308 /locus_tag="Deba_2006" /note="COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: mem:Memar_2469 anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: D1JH80 Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /codon_start=1 /transl_table=11 /product="anti-sigma regulatory factor, serine/threonine protein kinase" /protein_id="YP_003807965.1" /db_xref="GI:302343436" /db_xref="GeneID:9494475" /translation="MNRPADSYALELPADLASLAAMADFLEDKGQALGLAQDVRHALG LAADEALTNVVSYAYQGGPGPVRVYLERRDDAAVLIIEDEGVEFDPADAHEPDLDSAL EERPIGGLGLYFIQAMTDEVVRERSGGVNRLKMIKRLTPPDQSA" misc_feature 2228895..2229302 /locus_tag="Deba_2006" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene complement(2229316..2230332) /locus_tag="Deba_2007" /db_xref="GeneID:9494476" CDS complement(2229316..2230332) /locus_tag="Deba_2007" /note="COGs: COG2013 conserved hypothetical protein; InterPro IPR002838:IPR016031; KEGG: amr:AM1_1071 hypothetical protein; PFAM: protein of unknown function DUF124; SPTR: B0C1U4 Putative uncharacterized protein; PFAM: Protein of unknown function DUF124; TIGRFAM: conserved hypothetical protein TIGR00266" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807966.1" /db_xref="GI:302343437" /db_xref="GeneID:9494476" /translation="MAQWYVAVGGESRGPYEIDQLRGMLTSGELTQDSLVWGPDVSEW TPIRAVGALQGQLGRPSAPPPPPKAGPAADQVDYRIEGNEMQYVEIELDQGESVVAEA GGMLYMSADIAMDTVFGDGRRDNAKSSGLMGSLLGAGKRLLTGESLFMTIFTHKGASP KAHVAFAAPYPGKIMPMHLGELGGELICQKDAFLCAARGVALEIAFQKKIGAGLFGGE GFIMQRLLGDGLAFVHAGGTVFEKDLKPGETLRVDTGCLVALMPSVNYDVEFVGGVKT ALFGGEGLFLATLGGPGRVWLQSLPLSRVADRIYAAAKQGGGKQKGEGSLLGGALGTF LGGD" misc_feature complement(2229430..2230101) /locus_tag="Deba_2007" /note="Protein of unknown function DUF124; Region: DUF124; cl00884" /db_xref="CDD:193965" gene complement(2230507..2230731) /locus_tag="Deba_2008" /db_xref="GeneID:9494477" CDS complement(2230507..2230731) /locus_tag="Deba_2008" /note="KEGG: geo:Geob_1673 protein of unknown function DUF559; SPTR: B9M650 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807967.1" /db_xref="GI:302343438" /db_xref="GeneID:9494477" /translation="MTTSSKKKHQCPDCRQCQGCSPARCNLCRGQGEDAASRFAGMSL SEQIALFEAVNRGDAPEGDYDAHGQCRCRR" gene 2230875..2231471 /locus_tag="Deba_2009" /db_xref="GeneID:9494478" CDS 2230875..2231471 /locus_tag="Deba_2009" /note="COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: pol:Bpro_3150 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: C9PD86 DedA family protein; PFAM: SNARE associated Golgi protein" /codon_start=1 /transl_table=11 /product="SNARE associated Golgi protein-related protein" /protein_id="YP_003807968.1" /db_xref="GI:302343439" /db_xref="GeneID:9494478" /translation="MDSHFIEQVVSSYGYLALFVGTFLEGETFFLLGGIAARKDLLNP FYVAMAAMAGGFVGDQFFFFLGRWRGDKVIGMSRRLERKAVEARVLVRRHAVALILMS RFLYGLRMVIPLACGAAHITPWRFVALNFISALLWTLTFGGLGYFFGGWLSDNIGAFK NMQVIVAVLAGVLLACLLAGRLIKKTLAASGDEQGSGR" misc_feature 2230944..2231273 /locus_tag="Deba_2009" /note="SNARE associated Golgi protein; Region: SNARE_assoc; cl00429" /db_xref="CDD:193815" gene complement(2231523..2232026) /locus_tag="Deba_2010" /db_xref="GeneID:9494479" CDS complement(2231523..2232026) /locus_tag="Deba_2010" /note="KEGG: sus:Acid_5380 hypothetical protein; SPTR: Q01VI6 Putative uncharacterized protein; PFAM: Disulphide bond corrector protein DsbC" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807969.1" /db_xref="GI:302343440" /db_xref="GeneID:9494479" /translation="MGVRKTTALATVLTCLFVLACQCPALAMGGPDDQQVSGKLTLDK AAHKAGETAKAMITLEIAKGFHLNADADQGPAGMPMQLVLEGDEALTLGLVSYPKARL AKLAFAEKKAAVFEDTIELTAEIVIAADAAKGPRKAELVLTYQGCNDQMCFMPVDLVL PVTVLVD" misc_feature complement(2231577..>2231858) /locus_tag="Deba_2010" /note="Disulphide bond corrector protein DsbC; Region: DsbC; pfam11412" /db_xref="CDD:192754" gene complement(2232061..2233095) /locus_tag="Deba_2011" /db_xref="GeneID:9494480" CDS complement(2232061..2233095) /locus_tag="Deba_2011" /note="InterPro IPR015424; KEGG: ttj:TTHA0934 glutamate-1-semialdehyde 2,1-aminomutase (GSA) (glutamate-1-semialdehyde aminotransferase) (GSA-AT); SPTR: Q5SJS4 glutamate-1-semialdehyde 2,1-aminomutase; PFAM: Aminotransferase class-III" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807970.1" /db_xref="GI:302343441" /db_xref="GeneID:9494480" /translation="MPSLISIHAPGPDAPTRHELQTLESIWASQDKVTDRRIDFIDKS MRWHQPLPGVTADDVAAMFQRLLAWPAWVRLFARPPHAVLAASHLARQRGLNPGVRWV APGTGAPFDPPKGPPGVDILRADWASGAAEVQRAAARAKSQGLVLVVDESLTGFRLSR RGAVEAFGLEPDAVLMAIDLPGGASAAILAGIGEPPRKAAAAPDAEVLAHLAGLARWL GEFDLAGRLNDLGRGLEVGLNFFRRKAMLDAELFVERPWALPRLGGKRVWAFMELARE EGLLMDKMVMLDAGLDLEVMQRLVWPRLARAVARLRVLPEGQKAPGGWREAGPTAKRI GLDELLPAQK" misc_feature complement(<2232568..>2232675) /locus_tag="Deba_2011" /note="glutamate-1-semialdehyde 2,1-aminomutase; Region: PLN02482" /db_xref="CDD:178100" gene 2233330..2233692 /locus_tag="Deba_2012" /db_xref="GeneID:9494481" CDS 2233330..2233692 /locus_tag="Deba_2012" /note="InterPro IPR005186; KEGG: nis:NIS_0641 flagellar protein FlaG; PFAM: flagellar protein FlaG protein; SPTR: Q9ZFD5 FlaG (Fragment); PFAM: FlaG protein" /codon_start=1 /transl_table=11 /product="flagellar protein FlaG protein" /protein_id="YP_003807971.1" /db_xref="GI:302343442" /db_xref="GeneID:9494481" /translation="MEIMSISATKIVEAASRQAQARQHSREELSSITAGVNQAADQQA AEPAPREALTQAMEQLKQTFKVEVRLEVDEESGRDVVKILSSDGQRLIRQIPPKAAIA MAQKARNGHLEGILDSLA" misc_feature <2233486..2233647 /locus_tag="Deba_2012" /note="FlaG protein; Region: FlaG; cl00591" /db_xref="CDD:193880" gene 2233933..2235537 /locus_tag="Deba_2013" /db_xref="GeneID:9494482" CDS 2233933..2235537 /locus_tag="Deba_2013" /note="COGs: COG2206 HD-GYP domain; InterProIPR001789:IPR003018:IPR003607:IPR006674:IPR 011006; KEGG: sfu:Sfum_3292 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: response regulator receiver; GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; GAF domain protein; metal-dependent phosphohydrolase HD region; SPTR: A0LNG3 Response regulator receiver modulated metal dependent phosphohydrolase; PFAM: HD domain; Response regulator receiver domain; TIGRFAM: uncharacterized domain HDIG" /codon_start=1 /transl_table=11 /product="response regulator receiver modulated metal dependent phosphohydrolase" /protein_id="YP_003807972.1" /db_xref="GI:302343443" /db_xref="GeneID:9494482" /translation="MTREAQRAIPEDNAVSAERLRILLVDDEPNIREALREYLSSINN HHVVCAAGGPEALAIFKPGQFDCAFLDLKMPEMTGVELLSRLKEQDKSLPVIIMTGFP SLDAAIDTMRQGASDFLIKPFNLSEIKVTLERVVREQRLLKENLRLADRLRHQERIEK LNKELQRRIREQHIIHQISETIDRMHTSEDIYQGMAALAARYLDSEKTAVLLLDRASG QLLVIAAHGFGPEAIGQGAPGAELGVLGKVAAEGQPMFGQGATDKRLSAMLPLRGAFF ATPIKIRDEIFGVLLVGEKSGGASYDGEDVFVARFLCQKAVLSIENIALYESMVANMH STLGALVGAMEAKDPYTRQHSRRVTNFSVLTAQAMNLSIDQVESLRFAAYLHDIGKIG VKDHILLKDSRLSDEEYEQIKLHPVIGEAIIQAMDLTQNERSIIRHHHERWDGNGYPD GLERENIPLLARIVAVADAYDAMTSDRPYRKAKNRADAMVELRRCAGEQFDPNVVEAF LEMLVRYAPSEGGDMSLRQIGVGMEG" misc_feature 2233996..2234331 /locus_tag="Deba_2013" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 2233999..2234340 /locus_tag="Deba_2013" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2234008..2234013,2234143..2234145,2234167..2234169, 2234227..2234229,2234284..2234286,2234293..2234298) /locus_tag="Deba_2013" /note="active site" /db_xref="CDD:29071" misc_feature 2234143..2234145 /locus_tag="Deba_2013" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2234152..2234157,2234161..2234169) /locus_tag="Deba_2013" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2234293..2234301 /locus_tag="Deba_2013" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 2234467..2234913 /locus_tag="Deba_2013" /note="FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203" /db_xref="CDD:32385" misc_feature 2234497..2234919 /locus_tag="Deba_2013" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 2234977..2235396 /locus_tag="Deba_2013" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature order(2234992..2234994,2235088..2235093,2235334..2235336) /locus_tag="Deba_2013" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature 2235091..2235093 /locus_tag="Deba_2013" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene 2235571..2236146 /locus_tag="Deba_2014" /db_xref="GeneID:9494483" CDS 2235571..2236146 /locus_tag="Deba_2014" /note="InterPro IPR009875; KEGG: dba:Dbac_0482 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: C0GRU4 Type IV pilus assembly PilZ; PFAM: PilZ domain" /codon_start=1 /transl_table=11 /product="type IV pilus assembly PilZ" /protein_id="YP_003807973.1" /db_xref="GI:302343444" /db_xref="GeneID:9494483" /translation="MPESHSHDRDFFRAPARLSVRYGPDTPEGRRAMSMDQSLWQTQS QLEEAARAVKENRNISDSLLPLLDVLRWLDFKVDMVLHHLRQREHDQHFPHLLETFDI SGSGLGVASHGALALGQRLILAISLPNRPWRPIYARGEVVRDKKDAHGQPRFGVRFSH IPEADQERLVRFTFEQQRRQLARRNQEADDQ" misc_feature <2235862..2236095 /locus_tag="Deba_2014" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene 2236143..2236871 /locus_tag="Deba_2015" /db_xref="GeneID:9494484" CDS 2236143..2236871 /locus_tag="Deba_2015" /note="COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594:IPR005467; KEGG: tye:THEYE_A0747 sensor histidine kinase, PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: B5YK24 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_003807974.1" /db_xref="GI:302343445" /db_xref="GeneID:9494484" /translation="MNPAQMPPRIVEALIRREKLAMVGRLLKGVVHNISGAVQMVRLP LDLLELKLASVTTSQVADKLTAAQQGLNRLTDEVSMLSAKAAIQAQPTPDPVDLCALL RDQLRFWRADPYFKHQVKLTLDLSDNLPFLRVDPSDLALAFNALVANAVEALNAAQRG QLSARAWRLDGELLVEVVDDGPGPSPTMAAGLFEPFNTDKGWPHDGLGLFLARQALAP WRGDVRWSAQRPNAFLLVLPLAKA" misc_feature <2236167..2236865 /locus_tag="Deba_2015" /note="sensory histidine kinase AtoS; Provisional; Region: PRK11360" /db_xref="CDD:183098" misc_feature 2236614..2236862 /locus_tag="Deba_2015" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene 2236868..2238769 /locus_tag="Deba_2016" /db_xref="GeneID:9494485" CDS 2236868..2238769 /locus_tag="Deba_2016" /note="COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155:IPR016024:IPR011989; KEGG: dds:Ddes_1378 heat domain containing protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: B8J0K3 HEAT domain containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat" /codon_start=1 /transl_table=11 /product="PBS lyase HEAT domain protein repeat-containing protein" /protein_id="YP_003807975.1" /db_xref="GI:302343446" /db_xref="GeneID:9494485" /translation="MTSHETSRLLAGLNNPSPAVRRESARALGHVGERSAIPALIDHL ADGDPDVEDAAAEALTKLRGRDVAARLVPMLALEHVGLRNRAMQLLRRVGGDAPDLLL RMLQDGDRDQRIFCADIIGSLRVGGAVKALCAALLRDPDPNVRAAAATSLGQQNDPAC LPSLVESLGDDEWVQFAVVEAMANIGDPAAVDPLLGHMENCSELVRARIAEALGELAD PKSAPHLLEAVAKAQGMLLCLLCGALVKTSEPEALLGLADDLREKVYTGLLDALYEPS EQLQALALRGLCVLADSGAVYSILDLARDTNSEMIAQLAQQALCAIGATPPLLSAARD PDARLAGAAISTLSRLGGHEAHQILREALGHPSAAVRRLAVAGLGRLGHASDIDHLLD LSADPEPSVLMEVAKALGKSGRPEALDRLGELLEHDDPEVRLQALASMLRMPGEQLMD ALERGLTADNAKRRQLCAIGLGQLKAEEAFGQLAQLLDDPEPSVRRAAAWAVLQGRGL PPLAHLEKVLDDPAREVRLALVEALAQTADRASHALLVRAMDDADLDIRLLAIRSLGQ ARATDAVSALASRLAATETAVKLAAAAALGEIGDPTAEGMLLALLADENPTVRQVAND AIQKIGGRF" misc_feature <2236892..2237455 /locus_tag="Deba_2016" /note="putative oxidoreductase/HEAT repeat-containing protein; Provisional; Region: PRK13800" /db_xref="CDD:184334" misc_feature 2237267..2238292 /locus_tag="Deba_2016" /note="FOG: HEAT repeat [Energy production and conversion]; Region: COG1413" /db_xref="CDD:31603" misc_feature 2237870..2238757 /locus_tag="Deba_2016" /note="FOG: HEAT repeat [Energy production and conversion]; Region: COG1413" /db_xref="CDD:31603" gene 2238897..2239262 /locus_tag="Deba_2017" /db_xref="GeneID:9494486" CDS 2238897..2239262 /locus_tag="Deba_2017" /note="COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789:IPR011006; KEGG: lip:LI1142 CheY-like receiver; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q1MP81 CheY-like receiver; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807976.1" /db_xref="GI:302343447" /db_xref="GeneID:9494486" /translation="MKHRILVVDDSLTIRNLLSMVLRQNGHDVVTAGDGFEGLQQLAA HRVDLIISDLNMPRMDGLSFIKKIRQNDSTSAIPVILLSTEKASRDIDNAMDAGASKY LVKPVLPAVLAAEVKKLLR" misc_feature 2238909..2239247 /locus_tag="Deba_2017" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 2238912..2239256 /locus_tag="Deba_2017" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2238921..2238926,2239053..2239055,2239077..2239079, 2239143..2239145,2239200..2239202,2239209..2239214) /locus_tag="Deba_2017" /note="active site" /db_xref="CDD:29071" misc_feature 2239053..2239055 /locus_tag="Deba_2017" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2239062..2239067,2239071..2239079) /locus_tag="Deba_2017" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2239209..2239217 /locus_tag="Deba_2017" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 2239381..2240538 /locus_tag="Deba_2018" /db_xref="GeneID:9494487" CDS 2239381..2240538 /locus_tag="Deba_2018" /note="COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; InterProIPR001789:IPR019734:IPR013105:IPR001440:IPR 011006:IPR013026:IPR011990; KEGG: dal:Dalk_2142 response regulator receiver protein; PFAM: response regulator receiver; hypothetical protein; hypothetical protein; SMART: response regulator receiver; Tetratricopeptide repeat; SPTR: C8QWV9 Response regulator receiver protein; PFAM: Response regulator receiver domain; Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003807977.1" /db_xref="GI:302343448" /db_xref="GeneID:9494487" /translation="MDNARDPNIRFMVIDDQFNVRRMIFNFLRTFGYTKVEDASDGQD AWNKLGYTQVDFIICDWNMPKMTGLDLLKKVRNDDAMRNVPFLMVTAEVVEEIVAEAI EEGVDGYIVKPFQAQTLIERIDSILEKRRNPDPVDVAFERGKALLAAGKPDQALESFD EALKLSPKSPRTLLAIGEALEALQKDEEALSRYKEAANLAERFVKAHDRLATLYQKMG DAEEATKHLRRAAKISPRNARRQLNLGKALIEQGMLEEGMAALTNAQNAAKKDPDLFS EVGEVLLSAGLNEQAAEAFSEAVSIDPNMVHLYNRLGIAYRRQKRYDDALRVYGQAMS VAPDDENLLYNMALALIESKRAKEARVCLQKALQLREDFKEARVLLAKLPA" misc_feature 2239414..2239761 /locus_tag="Deba_2018" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature 2239414..2239752 /locus_tag="Deba_2018" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature order(2239423..2239428,2239558..2239560,2239582..2239584, 2239648..2239650,2239705..2239707,2239714..2239719) /locus_tag="Deba_2018" /note="active site" /db_xref="CDD:29071" misc_feature 2239558..2239560 /locus_tag="Deba_2018" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2239567..2239572,2239576..2239584) /locus_tag="Deba_2018" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2239714..2239722 /locus_tag="Deba_2018" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 2239795..2240106 /locus_tag="Deba_2018" /note="tol-pal system protein YbgF; Region: tol_pal_ybgF; TIGR02795" /db_xref="CDD:188247" misc_feature 2239798..2240085 /locus_tag="Deba_2018" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(2239798..2239803,2239810..2239815,2239900..2239905, 2239909..2239914,2239921..2239926,2240002..2240007, 2240014..2240019,2240026..2240031) /locus_tag="Deba_2018" /note="binding surface" /db_xref="CDD:29151" misc_feature order(2239807..2239809,2239843..2239845,2239855..2239857, 2239864..2239866,2239909..2239911,2239945..2239947, 2239957..2239959,2239966..2239968,2240011..2240013, 2240047..2240049,2240059..2240061,2240068..2240070) /locus_tag="Deba_2018" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 2240197..2240496 /locus_tag="Deba_2018" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(2240197..2240202,2240206..2240211,2240218..2240223, 2240308..2240313,2240317..2240322,2240329..2240334, 2240410..2240415,2240422..2240427,2240434..2240439) /locus_tag="Deba_2018" /note="binding surface" /db_xref="CDD:29151" misc_feature order(2240215..2240217,2240251..2240253,2240263..2240265, 2240272..2240274,2240317..2240319,2240353..2240355, 2240365..2240367,2240374..2240376,2240419..2240421, 2240455..2240457,2240467..2240469,2240476..2240478) /locus_tag="Deba_2018" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(2240562..2241242) /locus_tag="Deba_2019" /db_xref="GeneID:9494488" CDS complement(2240562..2241242) /locus_tag="Deba_2019" /note="COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481:IPR007167:IPR008988; KEGG: dal:Dalk_1640 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; FeoA family protein; SPTR: B8FAP2 Ferric uptake regulator, Fur family; PFAM: FeoA domain; Ferric uptake regulator family" /codon_start=1 /transl_table=11 /product="ferric uptake regulator, Fur family" /protein_id="YP_003807978.1" /db_xref="GI:302343449" /db_xref="GeneID:9494488" /translation="MQTPPHDDEKRQFVSLLGQLGLGRAGERVAFVDAFLGHEEHHTA DGWQKLMRRRGLNMDLDFVVENLELLTRLGMATKREFEGAAARYEHQHLGEHHDHMIC TACGAIEEFCSPELERLQEEVARQHGFHHLRHRMQIYGLCKKCLARHPGAKRLTEAST GERVRVEQLPRGEQAAARLMAMGISKGVEMDVLSAGHGPMVVAVRGTRLALGCGEADK ILVRRADG" misc_feature complement(2240817..2241161) /locus_tag="Deba_2019" /note="Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153" /db_xref="CDD:133478" misc_feature complement(order(2240913..2240915,2240946..2240948, 2240952..2240954,2240976..2240978,2241120..2241122)) /locus_tag="Deba_2019" /note="metal binding site 2 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature complement(2241024..2241068) /locus_tag="Deba_2019" /note="putative DNA binding helix; other site" /db_xref="CDD:133478" misc_feature complement(order(2240841..2240843,2240892..2240894, 2240949..2240951,2240955..2240957)) /locus_tag="Deba_2019" /note="metal binding site 1 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature complement(order(2240820..2240846,2240850..2240858, 2240883..2240888,2240934..2240942)) /locus_tag="Deba_2019" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133478" misc_feature complement(order(2240817..2240819,2240928..2240930, 2240937..2240939)) /locus_tag="Deba_2019" /note="structural Zn2+ binding site [ion binding]; other site" /db_xref="CDD:133478" misc_feature complement(2240574..2240786) /locus_tag="Deba_2019" /note="FeoA domain; Region: FeoA; cl00838" /db_xref="CDD:193951" gene 2241480..2242598 /locus_tag="Deba_2020" /db_xref="GeneID:9494489" CDS 2241480..2242598 /locus_tag="Deba_2020" /note="COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterProIPR019546:IPR001450:IPR017909:IPR017896:IPR 006311; KEGG: dal:Dalk_1084 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8F941 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807979.1" /db_xref="GI:302343450" /db_xref="GeneID:9494489" /translation="MTKRVSRRDFLKSGLAAATVAASGAALPRLAMAATDDELCTVLD VGKCIGCEACVEACREAWQSSTPDPVSPIPQPFPARVPIEDWSKRKDVQDRLTPYNFL YVEMLAVSHKGQEVEINIPRRCMHCRNAPCANLCPFGAARVEGNGVVHIDGDLCLGGA KCKNVCPWKIPQRQSGVGLYLHLLPEYAGNGAMFKCHRCLPLVRQGQTPRCIEVCPEK VQAIGPRQEMVAAAAEMARAYAQADGRAADLWPEYVYGLEENGGTNTIYVAPVPFAAI NQAMIAQHKEQAREDIDAALSAGGGRGLGPGRGDGAGPELARFGRPSMGPQPDAMQSA KNLTWALAIAPVAGLAAGLGKFLSSTKDKGLGEAGGKK" misc_feature 2241603..>2242151 /locus_tag="Deba_2020" /note="Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]; Region: HybA; COG0437" /db_xref="CDD:30786" gene 2242595..2243068 /locus_tag="Deba_2021" /db_xref="GeneID:9494490" CDS 2242595..2243068 /locus_tag="Deba_2021" /note="KEGG: dal:Dalk_1085 iron-sulfur cluster-binding protein; SPTR: B8F942 Iron-sulfur cluster-binding protein" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster-binding protein" /protein_id="YP_003807980.1" /db_xref="GI:302343451" /db_xref="GeneID:9494490" /translation="MKPRAQAPGGALIKVLYGLAVLAAAFSGLGQMPLTKRYYIADLP GMAWSADFYRLSELHYVAVALLAALFGWRLGLKLRANPEGWSWGPRTWWGWTLLALLA LTGAVKVAANAGVLFAPWLLVAVNFTHLFCGMAFAFTALGALFRPKPKSDKLLLP" gene 2243295..2244437 /locus_tag="Deba_2022" /db_xref="GeneID:9494491" CDS 2243295..2244437 /locus_tag="Deba_2022" /note="COGs: COG0247 Fe-S oxidoreductase; InterPro IPR017900:IPR004017:IPR009051:IPR012285; KEGG: dae:Dtox_1734 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C8VX15 Putative uncharacterized protein; PFAM: Cysteine-rich domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807981.1" /db_xref="GI:302343452" /db_xref="GeneID:9494491" /translation="MTATPFLEVAEAIAAMGGETLTQCMQCGLCSGLCPWPAVGSEFR TRKLIRMAQMGLEGFESDDILYACTTCKLCVENCPRQVGIIDTVRAMRAMIAESGAAP SSLRTIMGSIHSQGNPWSGQRDAREKWTEGLNVPRFDENTEYFLSVCCTSAYDPRAIQ IARALVKVLDAAGVSYGIIGNEESCCGEALRKMGDEEQFTSLVEKNINLFNDKGVKKI ITTSPHCNMTFTQEYPEFGGEFEVVHYTELLKQLVDEGKLKIDPKMAKKIIYHDPCYL GRHCKVYEQPRDLLKAAGADLMEFNRNKGLAICCGGGGGRLWMEADAEQRFSTHKVRE AVAKGAEVVAMACPYCINMFVDSTKTENVDDKLQVMDIAEVLAACL" misc_feature 2243349..2244425 /locus_tag="Deba_2022" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" misc_feature <2243349..>2243585 /locus_tag="Deba_2022" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature 2243799..2243981 /locus_tag="Deba_2022" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene 2244635..2245120 /locus_tag="Deba_2023" /db_xref="GeneID:9494492" CDS 2244635..2245120 /locus_tag="Deba_2023" /note="KEGG: Gm6927; predicted gene 6927; SPTR: C2C2T9 CDF family cation diffusion facilitator CzrB" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807982.1" /db_xref="GI:302343453" /db_xref="GeneID:9494492" /translation="MKVVTPDHLFSLSPAHIVLHVLVVAATISVIGAFILRFALRKGA KVQMGYGRAYLLNFLLSLIILLCEVMFVYRVVHHTILTPSDFIGPGNWFAILLAIGFS LVVATIFLGFMVKRPDGRRIGTTASLAVALIYACIYVPIGLGYRALYFWVLQQQGALG G" gene 2245155..2246312 /locus_tag="Deba_2024" /db_xref="GeneID:9494493" CDS 2245155..2246312 /locus_tag="Deba_2024" /note="COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR013785; KEGG: sfu:Sfum_1744 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A0LJ29 radical SAM domain protein; PFAM: radical SAM superfamily" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003807983.1" /db_xref="GI:302343454" /db_xref="GeneID:9494493" /translation="MPTGLDKTLDFEQGPIRPPSEARSLLLRFSRNCPWNKCKFCPVY KGSRFSRRGLDEIKADIDAAAEMARQIDQLSWRMGHGGRMTDEVVNAVFGDPGIGDAF RNVAAWLYYGTGNVFLQDANNLIIEPETLAQALRYLRQRLPQVKRVTTYARSSSAARR SVEELRMLNDAGLDRIHVGMESGCDQVLAFMKKGVSQAQQIQAGRNIKQAGIELSEYV MPGLGGKKWTTQHAIDTAHALNQINPDFIRLRSLRVPGRVELHDDLAQGRFEKLSEDE MAAEIRLFISELDGIDSTVTSDHIMNLIETVSGRLPQDKGLMLAKLDDYLALPPRQRL IYRLCRRMGRCREPEDIDRLGLRPQLEAILADVEQRGDPDQILSDMADGFI" misc_feature <2245179..>2245895 /locus_tag="Deba_2024" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: COG1032" /db_xref="CDD:31235" misc_feature <2245641..2245871 /locus_tag="Deba_2024" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" gene complement(2246395..2247120) /locus_tag="Deba_2025" /db_xref="GeneID:9494494" CDS complement(2246395..2247120) /locus_tag="Deba_2025" /note="InterPro IPR002781; KEGG: dat:HRM2_08600 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: C0QKA2 Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807984.1" /db_xref="GI:302343455" /db_xref="GeneID:9494494" /translation="MELQIAAILALSALIFSLAGFGFGLISVPLLALAMPIQEAVALQ FPVSMLLVVYNTWRYRHDFNWRSIVPLMFGALVAMPLGMLSLQHFSASFMKTALAVFI VAAVINGRLEIGRRWASRWAATPAMGVVMGVVSGWFGGAYTTGGPPAVIYAMAATKDP QETKGVLAAYFALTDVVVMAMYFWSGLMTWPVLGRSLAFSPAVVLGMVVGFALARRIG AGVYRLAADALLMVSAALLWRSA" misc_feature complement(2246410..2247063) /locus_tag="Deba_2025" /note="Predicted permeases [General function prediction only]; Region: COG0730; cl00498" /db_xref="CDD:186038" misc_feature complement(2246410..2247063) /locus_tag="Deba_2025" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene 2247295..2247882 /locus_tag="Deba_2026" /db_xref="GeneID:9494495" CDS 2247295..2247882 /locus_tag="Deba_2026" /note="COGs: COG3786 conserved hypothetical protein; InterPro IPR005490; KEGG: rce:RC1_2938 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: B6IVI2 Putative uncharacterized protein; PFAM: L,D-transpeptidase catalytic domain" /codon_start=1 /transl_table=11 /product="ErfK/YbiS/YcfS/YnhG family protein" /protein_id="YP_003807985.1" /db_xref="GI:302343456" /db_xref="GeneID:9494495" /translation="MAKITRLLLFAAVALAFWGGAAPAADLDIWPDGRATIDGQSFRC ALGRAGVSAAKREGDGATPVGQFPPRMVLFRPDIFAASPPTKLPVQPLAVDDGWCDDP ALAQYNRMVKLPFAGSHEILWRADDRRYDLIVPLGYNDDPPRPGLGSAIFLHVAKDDY EPTSGCVGFAKGDLLAIVGRLGPDSLVRIHATPAR" misc_feature <2247409..2247861 /locus_tag="Deba_2026" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3786" /db_xref="CDD:33581" gene 2247960..2248925 /locus_tag="Deba_2027" /db_xref="GeneID:9494496" CDS 2247960..2248925 /locus_tag="Deba_2027" /EC_number="6.1.1.2" /note="COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR001412:IPR002306:IPR002305:IPR014729; KEGG: pca:Pcar_0588 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Q3A704 Tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="tryptophanyl-tRNA synthetase" /protein_id="YP_003807986.1" /db_xref="GI:302343457" /db_xref="GeneID:9494496" /translation="MRVLSGVQPSGTLHIGNYFAMMKRMIQYQNEHTLFCFIVNYHAL TTVGEPDKLRQGALNAAMDFLALGLDPAKCYFWMQSDIPEVCELTWILFQQTPVGLLE RAHSYKDKLAKGFSPQAGLFNYPVLMAADILMFQSEAVPVGKDQKQHIEITRDIAIKF NNQYGEVFTLPEPWIDDDTATVPGIDGQKMSKSYDNTLEIFLPEKQLRKKIMSIVTDS TPVEAPKDPEKCNVYKLISLFMTAAEREELAQRYRAGGLGYGQVKKELFERMWAYFAP YRDKRAALAADPEEVRRIMAQGAQKARALAMETIDKVRRAVGLNY" misc_feature 2247963..2248922 /locus_tag="Deba_2027" /note="tryptophanyl-tRNA synthetase II; Reviewed; Region: PRK12282" /db_xref="CDD:183400" misc_feature 2247963..2248778 /locus_tag="Deba_2027" /note="catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806" /db_xref="CDD:173903" misc_feature order(2247969..2247983,2247999..2248001,2248005..2248010, 2248017..2248019,2248068..2248070,2248083..2248085, 2248194..2248196,2248329..2248331,2248341..2248343, 2248350..2248352,2248377..2248379,2248383..2248388, 2248392..2248397,2248404..2248406,2248497..2248499, 2248524..2248529,2248533..2248535) /locus_tag="Deba_2027" /note="active site" /db_xref="CDD:173903" misc_feature 2247999..2248010 /locus_tag="Deba_2027" /note="HIGH motif; other site" /db_xref="CDD:173903" misc_feature order(2248080..2248082,2248089..2248094,2248212..2248217, 2248221..2248229,2248236..2248241,2248245..2248256, 2248260..2248265,2248317..2248319,2248323..2248328, 2248335..2248340) /locus_tag="Deba_2027" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173903" misc_feature 2248524..2248538 /locus_tag="Deba_2027" /note="KMSKS motif; other site" /db_xref="CDD:173903" gene complement(2249004..2250101) /locus_tag="Deba_2028" /db_xref="GeneID:9494497" CDS complement(2249004..2250101) /locus_tag="Deba_2028" /note="COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155:IPR013785; KEGG: gur:Gura_4410 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; SPTR: C8R0Q8 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase / NADH oxidase family" /codon_start=1 /transl_table=11 /product="NADH:flavin oxidoreductase/NADH oxidase" /protein_id="YP_003807987.1" /db_xref="GI:302343458" /db_xref="GeneID:9494497" /translation="MGDIFTPWRLGGLALQNRLVRSATYEGLAEPDGTPKIELANLLG DLAEGGVGLIITGYAYVRSDGLGLPNQTGVYIDAQVGPLARVSDAVHRCGGKVALQIV HAGGQSKPEWHAGHQLIGPSAIVHPAFGAPIAAMSKDQIADVIDCFGRAAARAKAAGF DGVQLHGAHGYLINQFLSPNTNLRDDEYGGDIDGRARFCLEAYQAARQAVGPDYPVFI KLSSHDAMEGGLVLEDALHVARRLDAMGVDAIEASGGVIAAGKNSPSRLVKGPEQEGY FLAEAKAIKAAVKCPVISVGGWRTRPRIEQALDAIDAVAICRPLVRQPDLPRRWAQGS EESPTCVSCGKCIGVAMRQGLACALDLAKED" misc_feature complement(2249022..2250101) /locus_tag="Deba_2028" /note="NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902" /db_xref="CDD:32086" misc_feature complement(2249103..2250089) /locus_tag="Deba_2028" /note="Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as...; Region: OYE_like_FMN_family; cd02803" /db_xref="CDD:73369" misc_feature complement(order(2249148..2249153,2249445..2249447, 2249589..2249591,2249802..2249804,2249928..2249930, 2250027..2250029,2250033..2250035)) /locus_tag="Deba_2028" /note="active site" /db_xref="CDD:73369" misc_feature complement(order(2249148..2249153,2249445..2249447, 2249802..2249804,2249928..2249930,2250027..2250029, 2250033..2250035)) /locus_tag="Deba_2028" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73369" misc_feature complement(order(2249589..2249591,2249595..2249597)) /locus_tag="Deba_2028" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73369" misc_feature complement(2249589..2249591) /locus_tag="Deba_2028" /note="putative catalytic residue [active]" /db_xref="CDD:73369" gene complement(2250184..2252040) /locus_tag="Deba_2029" /db_xref="GeneID:9494498" CDS complement(2250184..2252040) /locus_tag="Deba_2029" /note="COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003593:IPR003439; KEGG: gsu:GSU0913 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q74EP9 ABC transporter, ATP-binding protein; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003807988.1" /db_xref="GI:302343459" /db_xref="GeneID:9494498" /translation="MALINLFNVGLAFGGPKLLDQISFLVRPGERVCLVGRNGAGKSS LLKILAGQLAPEHGEVSREVGLRCAYLPQNVPMGLQGSVYEVVAAGLGEPGRVLADLR RGRAASAGHDDQELWRLDHQLAAVLDRLGLDGEAAMESLSGGLKRRALLARALAAQPE LLLLDEPTNHLDIDSIVWLENFLAGRDGAMVFVSHDRAFARNLATRTVELDRGRLLDW NCSYDEFVQRREDALQNESERQARFDKKMAQEEQWLRRGVKARRTRDEGRVRRLMAMR AERAQRREALGSARLRAQEAGLSGKVVAELKDVSFGYGERPLIKGCNALIMRGDKVGV IGPNGSGKTTLLRLILGQLAPQSGQIILGANLEPAYFDQMRQEIDGDKSVRDNLVEGH DSLIINGNQRHVISYLQDFLFTPDRAHSPARVLSGGERNRLLLAKLFARPANLLVLDE PTNDLDGDTLELLEHLLVEFAGTVLLVSHDRQFINNTVSCILALEGDGVAREYVGGYD DWLAQRPVESEPAAAPKEPKAKRQRPRAEQPRRLSFKQRQELEALPARIEELERRQAA IQARLSDPEFYASAAKEAVGLAAELAELEAQLEAAYDAWADLERLAEETAGD" misc_feature complement(2250310..2252040) /locus_tag="Deba_2029" /note="ABC transporter ATPase component; Reviewed; Region: PRK11147" /db_xref="CDD:182996" misc_feature complement(2251399..2252019) /locus_tag="Deba_2029" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2251912..2251935) /locus_tag="Deba_2029" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(2251456..2251458,2251543..2251548, 2251822..2251824,2251909..2251917,2251921..2251926)) /locus_tag="Deba_2029" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(2251822..2251833) /locus_tag="Deba_2029" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(2251591..2251620) /locus_tag="Deba_2029" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(2251543..2251560) /locus_tag="Deba_2029" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(2251525..2251536) /locus_tag="Deba_2029" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(2251450..2251470) /locus_tag="Deba_2029" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature complement(<2251249..2251419) /locus_tag="Deba_2029" /note="ABC transporter; Region: ABC_tran_2; pfam12848" /db_xref="CDD:193322" misc_feature complement(2250547..2251128) /locus_tag="Deba_2029" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" gene complement(2252172..2253098) /locus_tag="Deba_2030" /db_xref="GeneID:9494499" CDS complement(2252172..2253098) /locus_tag="Deba_2030" /note="COGs: COG1715 restriction endonuclease; InterPro IPR007560; KEGG: ava:Ava_B0091 restriction endonuclease; PFAM: restriction endonuclease; SPTR: Q3M2I3 restriction endonuclease; PFAM: restriction endonuclease" /codon_start=1 /transl_table=11 /product="restriction endonuclease" /protein_id="YP_003807989.1" /db_xref="GI:302343460" /db_xref="GeneID:9494499" /translation="MPIPDFQSIMLPLLRYLADEMVHSNQDIYEALESQFTMTDEEKA ELLPSGKQRVFINRIGWAKSYMKQAGLIDAAGRGFYKISKTGKAVAADKSLDKIGINY LLKFPSFVTFRVGKGVSASIAAQDTDCGDGNSPDRTAEEHIGLGVDTIMLKLKQELMS NIKACSPRFFEKLVVDLLLAMGYGGSRQESGMLTGKGSDEGIDGVINEDRLGLDVIYV QAKRWEHAVGRPEIQKFAGALQGKRAKKGVYITTSCFTKDAYDFAGAIDSKIILVDGE RLAGLMVEHNVGVAVVQSIELKKVDMDYFIDE" misc_feature complement(2252175..2253098) /locus_tag="Deba_2030" /note="Restriction endonuclease [Defense mechanisms]; Region: Mrr; COG1715" /db_xref="CDD:31901" misc_feature complement(2252262..2252579) /locus_tag="Deba_2030" /note="Restriction endonuclease; Region: Mrr_cat; cl00747" /db_xref="CDD:153969" gene 2253358..2254479 /locus_tag="Deba_2031" /db_xref="GeneID:9494500" CDS 2253358..2254479 /locus_tag="Deba_2031" /EC_number="3.5.1.24" /note="COGs: COG3049 Penicillin V acylase and related amidase; InterPro IPR003199; KEGG: sun:SUN_1118 choloylglycine hydrolase; PFAM: choloylglycine hydrolase; PRIAM: choloylglycine hydrolase; SPTR: A6Q9B4 choloylglycine hydrolase; PFAM: Linear amide C-N hydrolases, choloylglycine hydrolase family" /codon_start=1 /transl_table=11 /product="choloylglycine hydrolase" /protein_id="YP_003807990.1" /db_xref="GI:302343461" /db_xref="GeneID:9494500" /translation="MKMGKISLVALVLCQIIACGAVGRAAACTGVSLQAADGAVVYGR TMEWGNYDLGSRVNIVPRGVELIGATPDGKPGHKWSTKLGVVGVDCLGKDLLLDGMNE AGLTVGAFYHPGFAEYGPYGPADAAKTISPSDVTTFILSQFATIEQTRQGMAKVLVAP VVEPTLGFPFPVHFLVTEPSGKAIVIEFLKGKMVIFDNPLGVITNAPSFDWHLTNLRN YINLSPTSLANKKIRGLELTPVGVGSGMIGLPGDFTPPSRFVRAVTFTQTARPTADGP ETIYEFFRIMDNFNLPMHAGEGPKDAAQSTRGMRSSTLWTTAYDTKNKVLYYHTQHNR RVRKVEVGAIDFGALKGGPRHIPLDKVKAQDIEDVTPKF" misc_feature 2253439..2254380 /locus_tag="Deba_2031" /note="Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins. PVA has an N-...; Region: Ntn_PVA; cd00542" /db_xref="CDD:48435" misc_feature 2253439..2254374 /locus_tag="Deba_2031" /note="Linear amide C-N hydrolases, choloylglycine hydrolase family; Region: CBAH; pfam02275" /db_xref="CDD:145433" misc_feature order(2253439..2253441,2253487..2253489,2253493..2253495, 2253514..2253516,2253631..2253633,2253646..2253648, 2253844..2253846,2253856..2253858,2253871..2253873) /locus_tag="Deba_2031" /note="active site" /db_xref="CDD:48435" gene 2254872..2256182 /locus_tag="Deba_2032" /db_xref="GeneID:9494501" CDS 2254872..2256182 /locus_tag="Deba_2032" /note="COGs: COG0422 Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: geo:Geob_0543 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; SPTR: B9LZU6 Thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis protein ThiC" /protein_id="YP_003807991.1" /db_xref="GI:302343462" /db_xref="GeneID:9494501" /translation="MASQVELAVQGKITPAIARIAAHEGLDPEQVRQGFANGRIVAPI GSNHAHDAVGIGQGLRTKVNASIGTSTDIIDIDAEVKKAQAAQAAGADTLMELSVGGD LDKVRREVLAAVSLPVGNVPLYQAFAEAQRKYGDPNKLDEEMLFELIERQCADGIAFM AVHCGINLYTIERLERQNYRYGGLVSKGGAYMVAWMKANNRENPLYARFDRVVEILKK YDVVLSLGNGLRAGAIHDSFDRAMVQELLINCELAQLGREMGCQMLVEGPGHVPLDEI EANIILQKRMSDHAPYYMLGPIPCDVGAGLDHITAAIGAAQSARFGADLICYITPAEH LALPNERDVIEGVKAARLAAYIGDTAKYPQKGRQRDMAMSKARRDSDWQKQYDLALFG DEAMAIRAERCPADEKVCTMCGEFCANRGGMKVFGHLLEGACKA" misc_feature 2254878..2256152 /locus_tag="Deba_2032" /note="ThiC family; Region: ThiC; cl08031" /db_xref="CDD:195653" gene complement(2256255..2258783) /locus_tag="Deba_2033" /db_xref="GeneID:9494502" CDS complement(2256255..2258783) /locus_tag="Deba_2033" /note="COGs: COG0515 serine/threonine protein kinase; InterProIPR002290:IPR017442:IPR013229:IPR011009:IPR 019734:IPR000719:IPR013026; KEGG: rca:Rcas_0525 TPR repeat-containing serine/threonin protein kinase; PFAM: serine/threonine-protein kinase-like domain; PEGA domain protein; SMART: serine/threonine protein kinase; SPTR: A6C267 serine/threonine protein kinase; PFAM: Protein kinase domain; PEGA domain" /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase" /protein_id="YP_003807992.1" /db_xref="GI:302343463" /db_xref="GeneID:9494502" /translation="MSERDFVGQVLGKYRLLRLLGRGPSGDVYLAEHEILGNRVMVKT LPQSISRDRDLTARLMGDVRAVARLRHPNIASVHDADQAEGVDYFATDHVEGRFLAEI IDDQGPLAEEDIIAVSRQALSALEAARRAGVANRAIRPENIVIDKRGEAVIIAFGPDG SAAGDDLRVWGWLMAAMASGRLADADRPTRLPRAVEQRLSPELADFVLRLWDGDFVGA GQALVALEGIDRSDEPAGLDLDEPVAKGWSGPHMLDDDAGDDYQAYAGPPGGMPAKPS SRLGLWLAVAVVVFGLLGMGAWWALGPASQEPGGQFPGVDPREQLLAKLQVVVSEGDR LLEIGQLNEAEARYRAALEQEPGFAPALGGLTKVDAKRQAAARLEQARQLFDQNRLDQ AEAILKEVKASGLYTSEAKEGLREIKARRIQLDRLKNGRSEAGEQASGALLAMADSGD EGALRDGQNGHAVAAAASATPDAAALEAQRRAEEARAEQERRRQEELRAQQAQRQEQE RLEQERRQREQQAKAEQERKRQSLAQAQQLLDQAAVALGKDDLDLAQDLLNQSRALDA TLAGSDQTQRSIDFRRRELAQLADQRRQAQAQERAAADEAAALEAALARTAAKVRGSS PGQSISPVAVATPSATPTARPAAPAVRGVGPQELLVEGVRFFNEGKYQRAVENFEKVA AVYPNDKVIADYLAQAREMARAVNLGSLEVDCRVEASVFLDGRPVGSTPLLLHDVPVG RRVVEVRAYGGATRKTVEVRGRTLTKLNTMDILGASLQVDAKPAAQLFLNGKPMGDTP LALFNLPVGPATIILRAVGYQDLTVPVTLVVGQPVKLRLELKPF" misc_feature complement(<2258313..2258711) /locus_tag="Deba_2033" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" misc_feature complement(order(2258352..2258354,2258358..2258363, 2258367..2258369,2258373..2258375,2258484..2258486, 2258490..2258492,2258502..2258513,2258559..2258561, 2258655..2258657,2258661..2258663,2258700..2258702)) /locus_tag="Deba_2033" /note="active site" /db_xref="CDD:173623" misc_feature complement(order(2258352..2258354,2258358..2258363, 2258367..2258369,2258373..2258375,2258490..2258492, 2258502..2258513,2258559..2258561,2258655..2258657, 2258661..2258663,2258700..2258702)) /locus_tag="Deba_2033" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature complement(2256480..2256662) /locus_tag="Deba_2033" /note="PEGA domain; Region: PEGA; pfam08308" /db_xref="CDD:116891" misc_feature complement(2256261..2256461) /locus_tag="Deba_2033" /note="PEGA domain; Region: PEGA; pfam08308" /db_xref="CDD:116891" gene complement(2258980..2262948) /locus_tag="Deba_2034" /db_xref="GeneID:9494503" CDS complement(2258980..2262948) /locus_tag="Deba_2034" /note="COGs: COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; InterPro IPR005546:IPR006315; KEGG: dol:Dole_2458 outer membrane autotransporter; PFAM: Autotransporter beta- domain protein; SPTR: A8ZW28 Outer membrane autotransporter barrel domain; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain" /codon_start=1 /transl_table=11 /product="outer membrane autotransporter barrel domain protein" /protein_id="YP_003807993.1" /db_xref="GI:302343464" /db_xref="GeneID:9494503" /translation="MKAKVIIMLAFMLVSLAAPMNVAMAAVGTNPGTGNPNDYGGAGD WLGTADDDQYTNSNGATVSGDVDMTQGGADNLTNDGVVTGDVTLSSDGGGEIDNSGAV GGDIRGSQNSSSGDAGGQNSITNSGAVGGDIFGSYNSTGGASGGENTILNSGSACGFI YGSNNVGDDSEGGYNEVHINVGGTVGVDVYGSNNVGADSTGGINYITNLGTVDNDLYG SNNVGAGSSGGGNMIEIGEDGAVAGDVYGTCNQGANSSGGENQIFNTGTITGSVAGSS NEASGTSGGENSVVNRGVIHGSVAGSNNEANGTSGSGNGALNDGTIDGRLVGSNNQGA GASGGQNVLYNLGTVGQDIVASRNSGAGASGGQNFIINYGQADSFVAGSHNIGANSEG GTNVIYNTGDVAGSILGSYNQGDGSEGGGNSILNVGSASAIEGSANAGAGSSGGENLV LNAGTTYNAQGSWNTGVNSSGGGNTLYNHGSITYNLCGSANVGAGSSGGENQIYNTSA VGDSILGSYNQGANASGGENSIENTGQADYIDGSWNIGDGSSGGENTIYNYAGGLVLT DIYGSANDGVGSSGGDNQIYNYGTVSGSIHGSFNYGANTSGGDNYIANYGTVLGSVYG GVNAGMDTSGGGNHIYNYGTVQGSIRGSDDRGGNATSTGNVIFNYGVVGESIWSGDGD DVIHLLGGSVGGWVLAGDGDDTVIYSGGSSVGSGVSGQSGVDSLSLVGSGVFDADKFF DFERISYDGTGNATFINDWEFTSSLYIRGRLTLPDDQTIGAPTFTLSGSAFINGTLDS RLVTINPGGFLGGVGAILGNVVNHGWFSPGNSIGTMTVIGDYHNASDGVLLIELDPSG ACDLVRILNNGVAYLDGYAQVSLPQALYTNGQSWTIISAGAVQGSFLGLQGLPTSQTV SLTPVYHADSVSLDIARVSFASLALTPGQKGVGAALDAIVPLAQARQDQMTQLLLAMD WSYDLSQIRQTLEAANPEMYDAFSAASLSGARTFDRMLWWRSLTARSAANQAAGASGP TQAASQELSANGQAGGGWSAWARALGDWSNQSGDSGHLGYRLGSGGAIVGVDGRVLPW LSTGLAMASSVTNIDWSMAGHEGDQRALNIGLYASADLEAFYLNAAFSYGAYDNSAKR QSWLDGQGVKANADFDGQTWLARLGGGHDWLLAGWRVGPTASLEYVNLREDAFDESGA GLMSLRVKDRSENYLGSRLGARAAYDWACGAATLSPGGYVNWLHNFDADARTVQATFR DYGSAPISVEGLEPAADMLEAGLGLSAAFGPTFSLFVEGTILQSSSWSAQAVTAGLNV AF" misc_feature complement(2259025..2259813) /locus_tag="Deba_2034" /note="Autotransporter beta-domain; Region: Autotransporter; cl02365" /db_xref="CDD:194296" gene 2263122..2264507 /locus_tag="Deba_2035" /db_xref="GeneID:9494504" CDS 2263122..2264507 /locus_tag="Deba_2035" /note="InterPro IPR000064; KEGG: sfu:Sfum_0991 NLP/P60 protein; PFAM: NLP/P60 protein; SPTR: A0LGY4 NLP/P60 protein; PFAM: NlpC/P60 family" /codon_start=1 /transl_table=11 /product="NLP/P60 protein" /protein_id="YP_003807994.1" /db_xref="GI:302343465" /db_xref="GeneID:9494504" /translation="MRHIFEILRNTHSYSRPNKNLGARLAVLALAALLALGGCAGPSV KPADIQLPPQEAARYLGRHWRLDPAAQARLTKDFWRQYFACWQDPRPEEGLVAMVDEF ADKTAQPGLGENLLPRDPAWVEALEANAALASYPNAARPGLTVGWLNLRVLPTDRPSV GEANAPGDLTFDRLQQSLLPPNLPVYVHHQSRDGAWLLVQTPIAWGWLPSRQVAAVSQ AQQRRWRAAGFMAFLADDQPVNDRDGRFLFMAGLGCLLPVAENGHGALAAVADQHGNA VIVEAHFDRRWATPHPLPLTAVNLAAVIDGQLGRPYGWGGLFGNRDCSATLQDVFRVF GLWLPRNSGDQAETGRRLGLAGQSAARKEATIVAEGLPGLTILWMPGHVMLYLGDDNG RPVAFHNAWSLRLRDFWGNQGRAILGRALITTLRPGDDLPDLVKPDGVLVNRLEAMTL LVEPSDVLTIR" misc_feature 2263245..2263502 /locus_tag="Deba_2035" /note="NLPC_P60 stabilising domain, N term; Region: N_NLPC_P60; pfam12912" /db_xref="CDD:193385" misc_feature 2263614..2263748 /locus_tag="Deba_2035" /note="SH3 domain of the SH3b1 type; Region: SH3_6; pfam12913" /db_xref="CDD:193386" misc_feature 2264046..>2264291 /locus_tag="Deba_2035" /note="NlpC/P60 family; Region: NLPC_P60; cl11438" /db_xref="CDD:196233" gene 2264650..2265303 /locus_tag="Deba_2036" /db_xref="GeneID:9494505" CDS 2264650..2265303 /locus_tag="Deba_2036" /note="COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: dat:HRM2_24110 Isf; PFAM: NADPH-dependent FMN reductase; SPTR: C0QFT7 Isf; PFAM: NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="YP_003807995.1" /db_xref="GI:302343466" /db_xref="GeneID:9494505" /translation="MPAQVIGFSGSPIKNSNTDRLVQAVLRASGLEWEFVKLSQKNVR PCIACLGCAADNVCKVADDFPALAQKVRAAGALVVGAYPPYGSMDGFTKAFLERLFSL RHQNGLNRGKLAVVAVTGIGRGAPGLEEAAQQVSHALTLEGMEVLGQIKAAGNPECMV CGFGQSCPMSALPWIFGQDLAVTPEKFRAVENDDAAWREAERLGREIARRLGQTRAM" misc_feature 2264662..2265297 /locus_tag="Deba_2036" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 2265343..2265477 /locus_tag="Deba_2037" /db_xref="GeneID:9494506" CDS 2265343..2265477 /locus_tag="Deba_2037" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807996.1" /db_xref="GI:302343467" /db_xref="GeneID:9494506" /translation="MPKCGICGGEAPKQPCITEDGRCDLCGRKVKLADEKPEQADKKD " gene complement(2265550..2266287) /locus_tag="Deba_2038" /db_xref="GeneID:9494507" CDS complement(2265550..2266287) /locus_tag="Deba_2038" /note="COGs: COG2840 conserved hypothetical protein; InterPro IPR002625; KEGG: dma:DMR_30700 hypothetical protein; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; SPTR: C4XII6 Putative uncharacterized protein; PFAM: Smr domain" /codon_start=1 /transl_table=11 /product="Smr protein/MutS2" /protein_id="YP_003807997.1" /db_xref="GI:302343468" /db_xref="GeneID:9494507" /translation="MAKQKQNKSGQAPKVAGKRQGFNTPFAELKKSLKRVATPPSAQP AQAHAAAPSDQPDPADETIFFKAMADVARLAGAERVRPSDGQPPPLTPPPDDDLEVMA HLADLVAGATEFDLRWSPGFIEGRQPGVAEDLMEQMRRGAFPIQDHLDLHGMSQDQAA AALEDFVARSAAKGMRHVLIVHGRGLSSPGGVPVLKQALPGWLARKRMRRQVLAFCTA LGHDGGEGSIYVLLRKWSGPGRGGVFG" misc_feature complement(2265589..2265843) /locus_tag="Deba_2038" /note="Smr domain; Region: Smr; cl02619" /db_xref="CDD:194381" gene 2266516..2267136 /locus_tag="Deba_2039" /db_xref="GeneID:9494508" CDS 2266516..2267136 /locus_tag="Deba_2039" /note="KEGG: sfu:Sfum_4098 hypothetical protein; SPTR: A0LQR1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003807998.1" /db_xref="GI:302343469" /db_xref="GeneID:9494508" /translation="MARVDDYKMSFDMAAQKLADQDFGQLAQRAGATAEGDGLRLHYY GRPVRVGKSPVSVDHLDDGPEIPLAEKALILHYLVNADGTAPTGQWITYREVESGEFY WSAFVKRAKAPLVSFFGERPKLLDQLAPLVGGEGPGHSGDASAIIRALPNAPIMLVIW EGDDEFPADGNVLFDSSIEHYFSTEDIALAAGLPIYKMMALARNQQ" misc_feature 2266579..2267109 /locus_tag="Deba_2039" /note="Domain of unknown function (DUF3786); Region: DUF3786; pfam12654" /db_xref="CDD:193131" gene 2267203..2267532 /locus_tag="Deba_2040" /db_xref="GeneID:9494509" CDS 2267203..2267532 /locus_tag="Deba_2040" /note="InterPro IPR007419; KEGG: tai:Taci_1540 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD domain protein [2Fe-2S]-binding domain protein; SPTR: D1B6X0 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD-like [2Fe-2S] binding domain" /codon_start=1 /transl_table=11 /product="BFD domain protein (2Fe-2S)-binding domain protein" /protein_id="YP_003807999.1" /db_xref="GI:302343470" /db_xref="GeneID:9494509" /translation="MSEQHQHGQGCGCGHQHGAAASRDDWRNAPAETIVCHCLGLTKA QIVSAIEQGAFTVALVKTMTGAGRGNDCKQKHPLGHSCEGDLQRLVEAFGQPPEGYAR GGGCGCH" misc_feature 2267299..2267478 /locus_tag="Deba_2040" /note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; cl01093" /db_xref="CDD:194032" gene 2267577..2268356 /locus_tag="Deba_2041" /db_xref="GeneID:9494510" CDS 2267577..2268356 /locus_tag="Deba_2041" /note="COGs: COG3640 CO dehydrogenase maturation factor; InterPro IPR002586:IPR014433; KEGG: sfu:Sfum_4099 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: A0LQR2 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_003808000.1" /db_xref="GI:302343471" /db_xref="GeneID:9494510" /translation="MKLAVSGKGGVGKTTFSAMLARAFAEKGLEVLAVDADPDANLGQ ALGFPDYQTITPVSEMKELIDERTESKNNNFGTYFKLNPNVSDLPEKLSVAHDGVRLM VMGTVKKGGGGCICPASTMLKVLMTHMVLTSQQVLILDMEAGLEHLGRGTSRGVDFLI VVVEPGRRSVDTAHTIKKLAADLGVQKILIVGNKIRGPQDEQYLRDALAGFEFLGFIS HDQAIIEADMANKCPALFAKTAKEQVGRMADELLTRVAPKK" misc_feature 2267580..2268065 /locus_tag="Deba_2041" /note="The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible...; Region: CooC; cd02034" /db_xref="CDD:73297" misc_feature 2267586..2268251 /locus_tag="Deba_2041" /note="CobQ/CobB/MinD/ParA nucleotide binding domain; Region: CbiA; pfam01656" /db_xref="CDD:145019" misc_feature 2267595..2267618 /locus_tag="Deba_2041" /note="P-loop; other site" /db_xref="CDD:73297" misc_feature <2267937..2268254 /locus_tag="Deba_2041" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene complement(2268362..2269312) /locus_tag="Deba_2042" /db_xref="GeneID:9494511" CDS complement(2268362..2269312) /locus_tag="Deba_2042" /note="COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: gur:Gura_2340 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: A5G401 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003808001.1" /db_xref="GI:302343472" /db_xref="GeneID:9494511" /translation="MSARPLVSVIIPVHNRQRFIAAAVDSALTQTYPSLEVVIVDDGS DDDTPVVCQDLARRHAPRLRWARQANAGPSAARNHAARLARGDLLAFLDSDDLWLPEK LAKQVPLFEDVDVGLVYAGVRGQTPDGALTPPVPRRYCRGRCFFEILGQNPVPTSATV IRSELFAALGGFDEGRWRAEDKHLWLRAARRAKFAAVAEDLVLRRLLPEGLSVNEAAM MLGELSCLDDIQRLFPPQNAWEARRYRQARLWVRRHYGLNMFNQADYAGARAQLWRAQ VLAGGDLGSLPQFVVSLLPAGLADRLRAALRRARRPGRAG" misc_feature complement(2268755..2269288) /locus_tag="Deba_2042" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761" /db_xref="CDD:132997" misc_feature complement(order(2269028..2269030,2269034..2269036, 2269193..2269195,2269271..2269273,2269277..2269279)) /locus_tag="Deba_2042" /note="active site" /db_xref="CDD:132997" gene complement(2269485..2270117) /locus_tag="Deba_2043" /db_xref="GeneID:9494512" CDS complement(2269485..2270117) /locus_tag="Deba_2043" /note="InterPro IPR001647:IPR009057:IPR012287; KEGG: pag:PLES_03641 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q9I6C7 Probable transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_003808002.1" /db_xref="GI:302343473" /db_xref="GeneID:9494512" /translation="MNNRQKIIDTALELFNAHGAAAVGTNRIAQKLGISPGNLYYHFK NKQDIIRAIFEMIRADMAEVMKEIPSDLSTEASSAYLLGSMRVVWKYRFFYADLVALL HNDPELRRLFLAMRAHTVSTTMALYRRLIQAGQMNQPEHQWELDSLTLNTWIVATNWV RYLQTCKSDVDVSQADFERGVLHVYSLVMPYLPAQRREDFLRFYLAAQPD" misc_feature complement(2269566..2270108) /locus_tag="Deba_2043" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(2269959..2270099) /locus_tag="Deba_2043" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(2270249..2271952) /locus_tag="Deba_2044" /db_xref="GeneID:9494513" CDS complement(2270249..2271952) /locus_tag="Deba_2044" /note="COGs: COG2015 Alkyl sulfatase and related hydrolase; InterPro IPR016083; KEGG: dal:Dalk_0128 beta-lactamase domain protein; SPTR: B8FKM3 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; SCP-2 sterol transfer family" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_003808003.1" /db_xref="GI:302343474" /db_xref="GeneID:9494513" /translation="MLKRLCLLLICLLLAAPALATQPPGDAPPDPRLIEHNKDFPKEV IKLTDGVYVAVGYGLANSALIVGDGGNIIVDTMESVEEALPVREAFAKLSDQPVKAII YTHNHPDHVFGAAAFAAGGEPLVVSHSSTNYFLDRFLNTISPATSTRAMRMFGPLLPA GYHINSGIGPHLGYKPGMTIGLLRPTKTFDDKLELEVAGVKMLLFHAPGETDDQINIW LPDKKALFIGDNFYKTFPNLYTIRGTSYRDVTKWVASLDKARDLRPEYLVLGHTLPLK GADEIYKSLTNYRDAIQFVHDQTVRGINQDKSAGQIAAEVKLPKHLAEDPYLIEYYGM VPWSVRSIYDGYMGWYSGKARDLFPLPLPEQAALMAELAGGPDKLLAAAQKALDKGQA QWALELGDDVLQLQPENAQARALKVKAIKALVTGGVNANARNYLLTCALETEGGLTIP KADKKKVASEVIRAVPIARVFETMMVNLDPQKSAESDILVVFSFPDLKADYSAHLRRG VVEIRQRPSAKPDVVLTMDSNAFKEFMAGKIKAKKALSPEYAKVEGDPMKLMMFLEMF K" misc_feature complement(2271140..2271790) /locus_tag="Deba_2044" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" misc_feature complement(2270252..>2270410) /locus_tag="Deba_2044" /note="SCP-2 sterol transfer family; Region: SCP2; cl01225" /db_xref="CDD:194071" gene complement(2272114..2272614) /locus_tag="Deba_2045" /db_xref="GeneID:9494514" CDS complement(2272114..2272614) /locus_tag="Deba_2045" /note="COGs: COG1430 conserved hypothetical protein; InterPro IPR003795; KEGG: rce:RC1_1079 hypothetical protein; PFAM: protein of unknown function DUF192; SPTR: B4VP74 Uncharacterized ACR, COG1430, PFAM: Uncharacterized ACR, COG1430" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808004.1" /db_xref="GI:302343475" /db_xref="GeneID:9494514" /translation="MPTFARGRGAARLSSKIHACLPALLALLVAVAAGCATTAAQELP TVEVLIGSARLVAEAPQSDQDRWRGLSGRDGLAPGRGMVFINDPPRMMSMRMDGMRFA LDFVFCRDGRVVRILRDVGPEAPEGSIVSDEPVDFVLELPAGLCRRLGLQVGDAARLG PLTEPR" misc_feature complement(2272150..2272446) /locus_tag="Deba_2045" /note="Uncharacterized ACR, COG1430; Region: DUF192; cl00627" /db_xref="CDD:193890" gene complement(2272617..2273330) /locus_tag="Deba_2046" /db_xref="GeneID:9494515" CDS complement(2272617..2273330) /locus_tag="Deba_2046" /note="COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: dvm:DvMF_1479 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: B8DLQ1 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_003808005.1" /db_xref="GI:302343476" /db_xref="GeneID:9494515" /translation="MANEIDFESGFDELALDAGLSRRNLGQQMTDLLRRMVIEGKLRV GQRLVEQRLAEGLGISRTPVREALHRLAQEELLCKRSRGGYEVRPLTPEEVEDAEGLR AVLEAYAAERAASRCGPELRAVLERNLDEFEQALADKDEERLVALNSQFHHLLHQAAD STLLSRQLGELEVTVERISRALISNMAAGSWSCDEHRAIYMAIREGSPALAAKLAREH VAHGGTWIVARMREENLAI" misc_feature complement(2272623..2273273) /locus_tag="Deba_2046" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature complement(2273067..2273252) /locus_tag="Deba_2046" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(2273076..2273087,2273091..2273096, 2273124..2273126,2273133..2273138,2273142..2273156, 2273178..2273183,2273184..2273186)) /locus_tag="Deba_2046" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(2272668..2272985) /locus_tag="Deba_2046" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene complement(2273435..2274121) /locus_tag="Deba_2047" /db_xref="GeneID:9494516" CDS complement(2273435..2274121) /locus_tag="Deba_2047" /note="InterPro IPR016024:IPR011989; KEGG: dal:Dalk_2376 hypothetical protein; SPTR: Q1NTE0 HEAT" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808006.1" /db_xref="GI:302343477" /db_xref="GeneID:9494516" /translation="MSGKAAEKRLLRDWLAAGQTAVVLDHLAGGSAKRAATLLLGLVA EADYCTRMQAVSALGQVAEGLAAADLDAGRELMRRLLWSLNEESGAVPWGAPEALGEI MARDRRLAQEFVNLLISLIWPQGNYLEFPPLQAGVAWGLGRLAQAWPALVTQRGATEH LTALLIAPEAQTRGCAAWALGFLADPAAAEALRGLLADDGPCHIFEDGHLDSTTVGVV AANALARLGP" gene complement(2274128..2275327) /locus_tag="Deba_2048" /db_xref="GeneID:9494517" CDS complement(2274128..2275327) /locus_tag="Deba_2048" /note="COGs: COG0426 flavoprotein; InterPro IPR008254:IPR016440; KEGG: sfu:Sfum_3253 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; SPTR: C8R2S6 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; Flavodoxin" /codon_start=1 /transl_table=11 /product="flavodoxin/nitric oxide synthase" /protein_id="YP_003808007.1" /db_xref="GI:302343478" /db_xref="GeneID:9494517" /translation="MKPIELKKGVYWVGAVDWDIRDFHGYSTERGSTYNSYLVVDEKI TLFDIVKKGFSGDLLHRVHEIVDPKKIDYIVVNHVEMDHSGSIKEVIEYTNPEKVFCS KMGEKAIKAHFHNDGWPLVAVGSGDSIDLGARQVNFLETRMLHWPDSMFSYIPQEKLL ISSDAFGLHWATSERFDDMVDQGELMQHAAKYFANILLPYTPLIEKLLVQIKDMGLDI DTIAPDHGVIWRGDPGKILAAYDRWSRQEQIAKALVVYDTMWHSTEMMAKAVAGGIQD EGVSVKLMHLANWHRSDIVTEMLDAAALVFGSATLNNNMLPRMADVLTYIKGLRPLNK IGAAFGSFGWSGEAVKDVGAMMDQAKIEQVADSLRHQYVPDHAALRKCVELGQKVGQA VRQRVGG" misc_feature complement(2274146..2275312) /locus_tag="Deba_2048" /note="metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional; Region: PRK11921" /db_xref="CDD:183382" misc_feature complement(2274716..2275240) /locus_tag="Deba_2048" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" misc_feature complement(2274161..2274574) /locus_tag="Deba_2048" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene complement(2275429..2275590) /locus_tag="Deba_2049" /db_xref="GeneID:9494518" CDS complement(2275429..2275590) /locus_tag="Deba_2049" /note="COGs: COG1773 rubredoxin; InterPro IPR018527:IPR001052:IPR004039; KEGG: dvl:Dvul_0203 rubredoxin-type Fe(Cys)4 protein; PFAM: rubredoxin-type Fe(Cys)4 protein; SPTR: Q46496 rubredoxin; PFAM: rubredoxin" /codon_start=1 /transl_table=11 /product="rubredoxin-type Fe(Cys)4 protein" /protein_id="YP_003808008.1" /db_xref="GI:302343479" /db_xref="GeneID:9494518" /translation="MKKYVCGVCGYEYDPAKGDPDNGVAPGTAFEDLPADWSCPVCGA SKDQFEAQA" misc_feature complement(2275441..2275584) /locus_tag="Deba_2049" /note="Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They...; Region: rubredoxin; cd00730" /db_xref="CDD:29433" misc_feature complement(2275444..2275584) /locus_tag="Deba_2049" /note="Rubredoxin; Region: Rubredoxin; pfam00301" /db_xref="CDD:189494" misc_feature complement(order(2275465..2275467,2275474..2275476, 2275564..2275566,2275573..2275575)) /locus_tag="Deba_2049" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29433" gene complement(2275640..2276020) /locus_tag="Deba_2050" /db_xref="GeneID:9494519" CDS complement(2275640..2276020) /locus_tag="Deba_2050" /EC_number="1.15.1.1" /note="COGs: COG2033 Desulfoferrodoxin; InterPro IPR004462:IPR002742:IPR004793; KEGG: dma:DMR_17610 desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; SPTR: Q46495 Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin, N-terminal domain; Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain; desulfoferrodoxin; desulfoferrodoxin ferrous iron-binding domain" /codon_start=1 /transl_table=11 /product="desulfoferrodoxin" /protein_id="YP_003808009.1" /db_xref="GI:302343480" /db_xref="GeneID:9494519" /translation="MPERLQVYKCEVCGNIVEVLNGGIGELVCCNQDMKLMSENTVDA AKEKHVPVIEKIDGGYKVKVGAVAHPMEEKHYIQWIELLADDKCYTQFLKPGQAPEAV FLIEAAKVVAREYCNIHGHWKAEN" misc_feature complement(2275646..2276020) /locus_tag="Deba_2050" /note="desulfoferrodoxin; Region: dfx_rbo; TIGR00320" /db_xref="CDD:161816" misc_feature complement(2275910..2276011) /locus_tag="Deba_2050" /note="Desulforedoxin (DSRD) domain; a small non-heme iron domain present in the desulforedoxin (rubredoxin oxidoreductase) and desulfoferrodoxin proteins of some archeael and bacterial methanogens and sulfate/sulfur reducers. Desulforedoxin is a small...; Region: DSRD; cd00974" /db_xref="CDD:28839" misc_feature complement(order(2275931..2275936,2275982..2275984, 2275991..2275993)) /locus_tag="Deba_2050" /note="non-heme iron binding site [ion binding]; other site" /db_xref="CDD:28839" misc_feature complement(order(2275937..2275948,2275952..2275954, 2275958..2275963,2275967..2275978)) /locus_tag="Deba_2050" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:28839" misc_feature complement(2275652..2275885) /locus_tag="Deba_2050" /note="Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion...; Region: SORL_Dfx_classI; cd03171" /db_xref="CDD:28802" misc_feature complement(order(2275664..2275666,2275673..2275675, 2275796..2275798,2275814..2275816,2275874..2275876)) /locus_tag="Deba_2050" /note="non-heme iron binding site [ion binding]; other site" /db_xref="CDD:28802" misc_feature complement(order(2275703..2275705,2275709..2275711, 2275745..2275753,2275757..2275765,2275787..2275789)) /locus_tag="Deba_2050" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:28802" gene complement(2276074..2276649) /locus_tag="Deba_2051" /db_xref="GeneID:9494520" CDS complement(2276074..2276649) /locus_tag="Deba_2051" /note="COGs: COG1592 Rubrerythrin; InterProIPR003251:IPR009078:IPR004039:IPR009040:IPR 012347; KEGG: dol:Dole_2647 rubrerythrin; PFAM: Rubrerythrin; SPTR: A8ZX71 Rubrerythrin; PFAM: Rubrerythrin" /codon_start=1 /transl_table=11 /product="Rubrerythrin" /protein_id="YP_003808010.1" /db_xref="GI:302343481" /db_xref="GeneID:9494520" /translation="MASLKGTQTEKNLLISFAGESQARNRYNYFAAQARKEGYVQIAD IFAETADQEKEHAKRFFKFLEGGDVEVTAAFPAGVIGNTLENLLAAAEGEHHEQADMY PGFAKVARQEGFDVIAEVFERVSVAERFHEKRYRALAANIEAGRVFKREEPTTWRCRN CGYLHEGTEAPDLCPACAHPKAHFELKCENW" misc_feature complement(2276086..2276637) /locus_tag="Deba_2051" /note="Rubrerythrin [Energy production and conversion]; Region: COG1592" /db_xref="CDD:31780" misc_feature complement(2276221..2276628) /locus_tag="Deba_2051" /note="Rubrerythrin, ferritin-like diiron-binding domain; Region: Rubrerythrin; cd01041" /db_xref="CDD:153100" misc_feature complement(order(2276257..2276259,2276266..2276268, 2276359..2276361,2276368..2276373,2276482..2276484, 2276491..2276493,2276569..2276571,2276581..2276583, 2276590..2276592)) /locus_tag="Deba_2051" /note="binuclear metal center [ion binding]; other site" /db_xref="CDD:153100" misc_feature complement(2276089..2276190) /locus_tag="Deba_2051" /note="Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-...; Region: rubredoxin_SM; cd00729" /db_xref="CDD:29432" misc_feature complement(order(2276119..2276121,2276128..2276130, 2276167..2276169,2276176..2276178)) /locus_tag="Deba_2051" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29432" gene complement(2276698..2276907) /locus_tag="Deba_2052" /db_xref="GeneID:9494521" CDS complement(2276698..2276907) /locus_tag="Deba_2052" /note="KEGG: csc:Csac_0688 hypothetical protein; SPTR: C8S5Y8 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808011.1" /db_xref="GI:302343482" /db_xref="GeneID:9494521" /translation="MASDAANKILQALGSGDGPFSGKEIAEITGLDSKQVSCQVGALK KKGFVESPVRCKYVITDAGKAELGN" misc_feature complement(2276725..>2276859) /locus_tag="Deba_2052" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(order(2276812..2276814,2276839..2276847, 2276851..2276853)) /locus_tag="Deba_2052" /note="non-specific DNA interactions [nucleotide binding]; other site" /db_xref="CDD:28976" misc_feature complement(2276794..2276814) /locus_tag="Deba_2052" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:28976" misc_feature complement(order(2276794..2276796,2276806..2276811)) /locus_tag="Deba_2052" /note="sequence specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28976" misc_feature complement(2276806..2276811) /locus_tag="Deba_2052" /note="putative cAMP binding site [chemical binding]; other site" /db_xref="CDD:28976" gene complement(2276945..2277355) /locus_tag="Deba_2053" /db_xref="GeneID:9494522" CDS complement(2276945..2277355) /locus_tag="Deba_2053" /note="COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: drt:Dret_0141 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: C8R2S3 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family" /codon_start=1 /transl_table=11 /product="ferric uptake regulator, Fur family" /protein_id="YP_003808012.1" /db_xref="GI:302343483" /db_xref="GeneID:9494522" /translation="MMQQAQKLRMTTQRQVILDELKRLKSHPTAGELCEIVRRRLPRI SLGTVYRNLEILSRTGHIQKIDVAGVEMRFDGDTSDHYHVRCLGCGAVADLEMALSSQ LELEANRQSDFQITGHRVEFVGLCPACQDKKSRH" misc_feature complement(2276978..2277319) /locus_tag="Deba_2053" /note="Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153" /db_xref="CDD:133478" misc_feature complement(order(2277074..2277076,2277107..2277109, 2277113..2277115,2277131..2277133,2277275..2277277)) /locus_tag="Deba_2053" /note="metal binding site 2 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature complement(2277179..2277223) /locus_tag="Deba_2053" /note="putative DNA binding helix; other site" /db_xref="CDD:133478" misc_feature complement(order(2277002..2277004,2277053..2277055, 2277110..2277112,2277116..2277118)) /locus_tag="Deba_2053" /note="metal binding site 1 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature complement(order(2276981..2277007,2277011..2277019, 2277044..2277049,2277095..2277103)) /locus_tag="Deba_2053" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133478" misc_feature complement(order(2276978..2276980,2277089..2277091, 2277098..2277100)) /locus_tag="Deba_2053" /note="structural Zn2+ binding site [ion binding]; other site" /db_xref="CDD:133478" gene 2277603..2278307 /locus_tag="Deba_2054" /db_xref="GeneID:9494523" CDS 2277603..2278307 /locus_tag="Deba_2054" /note="COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR018317:IPR004479:IPR014729; KEGG: dal:Dalk_4152 ExsB protein; PFAM: Queuosine synthesis-like; SPTR: C5SBZ9 ExsB protein; TIGRFAM: exsB protein; PFAM: ExsB; TIGRFAM: exsB protein" /codon_start=1 /transl_table=11 /product="exsB protein" /protein_id="YP_003808013.1" /db_xref="GI:302343484" /db_xref="GeneID:9494523" /translation="MKRFDQKPPAVVLLSGGLDSATCLAMANDQGFEPHALSFRYGQR HAVELLAAQRVAQALGARRHLILDVDLRGVGGSALTADMAVPKGRSLAEMTDGVPVTY VPARNTLFLSLALAWAETLDCADIFIGVNALDYSGYPDCRPEFILAFENLANLATKMS TEQGRYIRVHAPLIRMTKAQIIRAGLALGVDYGLTHSCYDPDADGKPCGQCDSCLLRA KGFAEAKTPDPALKDS" misc_feature 2277630..2278271 /locus_tag="Deba_2054" /note="ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In...; Region: ExsB; cd01995" /db_xref="CDD:73293" misc_feature order(2277639..2277647,2277651..2277662,2277726..2277728, 2277732..2277734) /locus_tag="Deba_2054" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:73293" gene 2278375..2278902 /locus_tag="Deba_2055" /db_xref="GeneID:9494524" CDS 2278375..2278902 /locus_tag="Deba_2055" /note="KEGG: azc:AZC_0448 hypothetical protein; SPTR: A6C2E0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808014.1" /db_xref="GI:302343485" /db_xref="GeneID:9494524" /translation="MTDALYEALGLILGNMSTSLLLLALLIGAFFAAKVKGTHKRRAV TECFLRPLLFFSLGCASLWNAYWHAVQPAEVARFIGWQPSPFQWEIAMTNLGLSLAGL IAWQASRGFRLATALFAAVFLWGAAAGHIWQLVYLQDTAPGNAGGIVYTDVLTPLLLV VLLAVQDGEKAESLA" gene complement(2278899..2279597) /locus_tag="Deba_2056" /db_xref="GeneID:9494525" CDS complement(2278899..2279597) /locus_tag="Deba_2056" /note="COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: pay:PAU_03719 high-affinity branched-chain amino acid transport atp-binding protein LivF; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C7BLV1 High-affinity branched-chain amino acid transport atp-binding protein livf; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003808015.1" /db_xref="GI:302343486" /db_xref="GeneID:9494525" /translation="MLEVSDLRAYHGDIQALWGVGLRVERGEAVALIGPNGAGKTTLL LALMGLVRAEGRVLLAGRSILGLPSRRLVRLGMCLAPEGGRLFAEMTCRDNLLVGGHV LDRRRRLAALERVEGLFPRLAQRAAQKASTLSGGERQMLALGRALMAQPALLLLDEPS LGLHPLLAGQVFEAIGRIAAEGVTVLLVEQKVSLALRACQRAYVLENGRVTLDGPSAL VAADEGVRKAYLAL" misc_feature complement(2278902..2279597) /locus_tag="Deba_2056" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature complement(2278932..2279594) /locus_tag="Deba_2056" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature complement(2279475..2279498) /locus_tag="Deba_2056" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature complement(order(2279028..2279030,2279124..2279129, 2279352..2279354,2279472..2279480,2279484..2279489)) /locus_tag="Deba_2056" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature complement(2279352..2279363) /locus_tag="Deba_2056" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature complement(2279172..2279201) /locus_tag="Deba_2056" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature complement(2279124..2279141) /locus_tag="Deba_2056" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature complement(2279106..2279117) /locus_tag="Deba_2056" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature complement(2279022..2279042) /locus_tag="Deba_2056" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene complement(2279590..2280324) /locus_tag="Deba_2057" /db_xref="GeneID:9494526" CDS complement(2279590..2280324) /locus_tag="Deba_2057" /note="COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: pcl:Pcal_0845 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B7A702 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003808016.1" /db_xref="GI:302343487" /db_xref="GeneID:9494526" /translation="MSGEPLLEARGLSKSFGALRALDGVNLRLEHGGALGVIGPNGSG KSTMFRLLGGLMRPDAGQAFLEGRPIVGLAAWRVCRLGLALTGQIPQPLSELTVRENV VAAAVFGGGLAMGAARRAAEEHLALTGLAALADAPSGRLTVVNRRRLELARALATRPK VILLDENLAGLTPVETDQALDLLRQINAMGVGLLMVEHVMRAVLGICRRVMVLDQGRL IAQGRPEEVVREAAVIEAYLGSDVHA" misc_feature complement(2279602..2280312) /locus_tag="Deba_2057" /note="ABC-type (unclassified) transport system, ATPase component [General function prediction only]; Region: YhbG; COG1137" /db_xref="CDD:31332" misc_feature complement(2279653..2280306) /locus_tag="Deba_2057" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2280187..2280210) /locus_tag="Deba_2057" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(2279731..2279733,2279827..2279832, 2280061..2280063,2280184..2280192,2280196..2280201)) /locus_tag="Deba_2057" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(2280061..2280072) /locus_tag="Deba_2057" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(2279875..2279904) /locus_tag="Deba_2057" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(2279827..2279844) /locus_tag="Deba_2057" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(2279809..2279820) /locus_tag="Deba_2057" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(2279725..2279745) /locus_tag="Deba_2057" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(2280321..2281229) /locus_tag="Deba_2058" /db_xref="GeneID:9494527" CDS complement(2280321..2281229) /locus_tag="Deba_2058" /note="COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sti:Sthe_1537 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: D1C405 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_003808017.1" /db_xref="GI:302343488" /db_xref="GeneID:9494527" /translation="MNRRFAWLGAALAGGGLALLPLAGPGYHLALLTDIFFWVGMASC WNLACGNTGYIDFGSAAYAGLGAYAAGICLGSGAPLILALALAALIPALAALAVGLPT LRLRGAYFAIATLALAEALKQICQQWEGLTGGAMGLTVAVRLDDLDYYYAYLSIACLV LATCAMVRGGRLGLALRALRGDEAVAARIGVNTLAAKMTVYCLAATLIGLLGGVQATR ISYFTPADAFNVHITIKMIIMSLLGGLGSLWGPALGAAALQTLEDYLGAEFLDFYLAL VGAVIVAVIIFLPRGLVGGLGRGGRR" misc_feature complement(<2280513..2281127) /locus_tag="Deba_2058" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature complement(2280624..2280680) /locus_tag="Deba_2058" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene complement(2281226..2282092) /locus_tag="Deba_2059" /db_xref="GeneID:9494528" CDS complement(2281226..2282092) /locus_tag="Deba_2059" /note="COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR000408:IPR001851; KEGG: hwa:HQ3183A ABC-type branched-chain amino acid transport system, permease protein I; PFAM: inner-membrane translocator; SPTR: Q18FH5 ABC-type branched-chain amino acid transport system, permease protein I; PFAM: Branched-chain amino acid transport system / permease component" /codon_start=1 /transl_table=11 /product="inner-membrane translocator" /protein_id="YP_003808018.1" /db_xref="GI:302343489" /db_xref="GeneID:9494528" /translation="MLIIQALINGLLAGGVYAAFATGLSLIFGVMGVLNIAHGELVML GAFVCAGLFHGLGLGPLWSLPLSFGLMFALGYVMQRLFLAPIAGRPPVMSYILTFGLH LIIANLALLAWSADPRAVTTPYSGAGLRLWGLDLPLLKSMVCLAALAMVGGLHLFLSR TAWGRAIRATAQDRQAAELMGVDVGKVFALTFALGAGLTGLSGALVAMVRDVDVAMGL PYTILAFCVVVVGGMGYLPGALIGGALLGVVGELCTALISPGWSLAIMFTILYLTLLL RPAGLTGKGMVE" misc_feature complement(2281250..2282065) /locus_tag="Deba_2059" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature complement(2281514..2281570) /locus_tag="Deba_2059" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene complement(2282121..2283341) /locus_tag="Deba_2060" /db_xref="GeneID:9494529" CDS complement(2282121..2283341) /locus_tag="Deba_2060" /note="COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tye:THEYE_A0768 leu/ile/val-binding protein; PFAM: extracellular ligand-binding receptor; SPTR: Q649G6 Putative uncharacterized protein; PFAM: Receptor family ligand binding region" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_003808019.1" /db_xref="GI:302343490" /db_xref="GeneID:9494529" /translation="MRKMIIALLALCAMTITAQAEPVAGYRIGAVLPLSGLFGKDGAQ IKDAYTFWAEHVNAQGGVLAGGRRHPVELVIYDDASTPQRSQLLVRKLATADRVDLLL GGYGSSLVMAASAAGEALGYPMISGGASSNNLFERGYKYYFSTLGRATDEVSGVVRAM AGLSPKPRTCAIIGSDIPFTALACQGYRDQASTAGLEVVHYELFPLAMQDYNTVLAKA KASGADVLLVGSHLQVALRVMRAMKEINYSPKAVAFSYGPTVPAFVQELGPDAEGVFA ASEWTPNLPYDGPVFGSAAQFATAYRQRFGREPDYVEAAAVAGAVAQQLAVQELGLTP PIDAAGRRAIMERLHAMDVMTFYGRIKFDADGANVAHPPVCVQVQDGKLACVYPQSAR TAPPRYPMKPWSQR" misc_feature complement(2282196..2283293) /locus_tag="Deba_2060" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(2282208..2283263) /locus_tag="Deba_2060" /note="Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_ligand_binding_like_5; cd06338" /db_xref="CDD:107333" misc_feature complement(order(2282577..2282579,2282649..2282651, 2282805..2282807,2282952..2282960,2283021..2283029)) /locus_tag="Deba_2060" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107333" gene complement(2283379..2285466) /locus_tag="Deba_2061" /db_xref="GeneID:9494530" CDS complement(2283379..2285466) /locus_tag="Deba_2061" /note="COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dal:Dalk_3701 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: B8FLN5 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_003808020.1" /db_xref="GI:302343491" /db_xref="GeneID:9494530" /translation="MPRWINALALALALACAGCATTGPEPATPPLDAKTEVRALFKLG HERMANGQYQAAADAFRAAADGASDDGARQSAIFWLARAQAADGQDGPALRTLNGLKL AALAPAEQVRAQILHGDLERKAGQNDKAAGRLRALLFKPPAPLDGLQAKQALEDLCAA LEKLGRHEEAAASYLRWAEQYGLTTPEHMARLADLAGQVRSESVALMEQKAATPQMRA ALVLGLARAQLREGLLDQAGQTIERLRLDPQANAFEDQQRDLAAALAQARLVDPRAVG VILPLSGPYAATASQVLAAIELGLGLFRADGRGPTLYIEDSKGDPRSAAQAVDTLAVQ RRVMAIIGPMRAATSLAAARQAAQHGVPLITLSRLEGVSQAAPCVFQNFFTPQEQVDV VLDEVMGKRHKRLIAILAPKSPYGQGFAELMEKSVIQRDGSVVRKIFYDQNLPDFSPQ IKQLAALPPGNYRPGDPDSPAPVIDFEALFIPDGGARLGMIAPQLAYHDVIGIDLLGS SLWHDPVVLKTAGRYLEGCIFPVPFNPDDPRPMVREFVEAFSRNMGRKPNLLDAHGYD AAIMLRRIMDGPEAPRTRAEFCRQLSQASAVEGVCGQISVGSDGRFVKALELFTISRE RFVPLAQAGQSVGPPSYPKPSADEEPESVDGQLDSQPRPQLQPYTPPGEPEGQPPIRE LPLTPAPAGTIAR" misc_feature complement(2284732..>2285229) /locus_tag="Deba_2061" /note="tetratricopeptide repeat protein; Provisional; Region: PRK11788" /db_xref="CDD:183314" misc_feature complement(2283610..2284644) /locus_tag="Deba_2061" /note="Periplasmic binding component of lipoprotein LppC, an immunodominant antigen; Region: PBP1_YraM_LppC_lipoprotein_like; cd06339" /db_xref="CDD:107334" misc_feature complement(2283634..2284596) /locus_tag="Deba_2061" /note="Receptor family ligand binding region; Region: ANF_receptor; pfam01094" /db_xref="CDD:189839" misc_feature complement(order(2283940..2283942,2284024..2284026, 2284222..2284224,2284363..2284368,2284429..2284437)) /locus_tag="Deba_2061" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107334" gene complement(2285466..2287358) /locus_tag="Deba_2062" /db_xref="GeneID:9494531" CDS complement(2285466..2287358) /locus_tag="Deba_2062" /note="COGs: COG0443 Molecular chaperone; InterPro IPR018181:IPR001023:IPR013126:IPR012725; KEGG: sat:SYN_01983 chaperone protein; PFAM: Heat shock protein 70; SPTR: Q2LUH6 Chaperone protein dnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK" /codon_start=1 /transl_table=11 /product="chaperone protein DnaK" /protein_id="YP_003808021.1" /db_xref="GI:302343492" /db_xref="GeneID:9494531" /translation="MGKIIGIDLGTTNSCVAVMDGGEPKVITNQEGSRTTPSMVAIGE DGQRLVGQVAKRQAATNPANTVFAVKRLIGRKFRSASVQREQQFLPYIIVPAKNGDAN ITLWGRAYSPPELSAMVLAKLKQTAEDFLGEPVSKAVITVPAYFNDSQRQATKDAGRV AGLEVPRIINEPTAAALAYGLDRRGAARVAVFDLGGGTFDISILELGDGVFHVKATNG DTHLGGEDFDRRLVDFLAREFQKEHGVDLRADNMALQRLREAAERAKMELSSLIETEV NLPFITADAGGPKHLQIKLTRAQFEAMVDDLIARTEGPCRLAMQDAGLAPADIQEVIL VGGMTRMPKVQRKVHAIFGRQPIRSVNPDEVVAIGAAIQAGMIGGEVKNLVLLDVTPL SLGIETMGGVMTKLIERNTTIPTRKSQIFSTAEDNQPAVSIHVLQGEREMVVDNKTLG RFELVGIRPAPRGVPQIEVTFDIDANGLVKVGAKDLATGREQSIKIAAPSGLDEAEIQ RLINDAEEHAEEDRRRRKLAEAADHAHGLAYQVEEAMGQARGSVGAEVMEEANQALRG VRSALRAQSKAKIDLAMDVLIKASHKLAGAMYGAAGARGRDNGGGPKVDFEDFIDADF EEVDKP" misc_feature complement(2285580..2287358) /locus_tag="Deba_2062" /note="molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290" /db_xref="CDD:178963" gene complement(2287421..2288014) /locus_tag="Deba_2063" /db_xref="GeneID:9494532" CDS complement(2287421..2288014) /locus_tag="Deba_2063" /note="COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR000740:IPR009012:IPR013805; KEGG: mta:Moth_0584 GrpE protein; PFAM: GrpE protein; SPTR: B9XMT2 Protein grpE; PFAM: GrpE" /codon_start=1 /transl_table=11 /product="GrpE protein" /protein_id="YP_003808022.1" /db_xref="GI:302343493" /db_xref="GeneID:9494532" /translation="MSKSERMNIKNKPDEQREAAKATGQVDGPAQEVVDEPMSDLEQC QAQRAELEDRFMRLAAEFDNYKKRGEREKAEFLKRANEAMAGDLLPVLDNLERALGAA GEADKQTLQKGVEMVLGELRKTLERHGLEAIDALGQPFDPQLHEAMMQQENPDVEEGA VLSQFQKGYLFQGRLLRPAMVVVAKAPAPAEDEAASD" misc_feature complement(2287484..2288014) /locus_tag="Deba_2063" /note="Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: GrpE; COG0576" /db_xref="CDD:30921" misc_feature complement(2287484..2287870) /locus_tag="Deba_2063" /note="GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding...; Region: GrpE; cd00446" /db_xref="CDD:73207" misc_feature complement(order(2287631..2287633,2287664..2287666, 2287673..2287675,2287721..2287723,2287733..2287735, 2287754..2287756,2287763..2287765,2287775..2287777, 2287817..2287822,2287829..2287831,2287841..2287843, 2287850..2287855,2287862..2287867)) /locus_tag="Deba_2063" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73207" misc_feature complement(order(2287493..2287495,2287520..2287522, 2287568..2287582,2287589..2287591,2287814..2287816)) /locus_tag="Deba_2063" /note="hsp70 (ATPase domain) interactions [polypeptide binding]; other site" /db_xref="CDD:73207" gene complement(2288049..2289092) /locus_tag="Deba_2064" /db_xref="GeneID:9494533" CDS complement(2288049..2289092) /locus_tag="Deba_2064" /note="COGs: COG1420 Transcriptional regulator of heat shock gene; InterPro IPR002571:IPR011991; KEGG: gur:Gura_0209 heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; SPTR: A5GDC6 Heat-inducible transcription repressor HrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA" /codon_start=1 /transl_table=11 /product="heat-inducible transcription repressor HrcA" /protein_id="YP_003808023.1" /db_xref="GI:302343494" /db_xref="GeneID:9494533" /translation="MTKELSDRSKLILAAVVANYIATAEPVGSRTISRQDYVDLSPAT VRNVMADLEEMGLLEQPHVSAGRVPTNEGLRLYVDTILQVGELEDQAKLMIHRALDEN QAYDLNGLLKTAGKALSDVNRLAAVVAAPNPDNDVFRQMEFVRLSESLILVVMVTRSG VVQNRVILSDEDVSQENLDKCTRYLNSLMGELTLSQVRKRVAKEMAKEKNRFDAVLGR ALRLGQKALQGQGDGDLFIEGRTNLMEAPEFADVGRLRAIFQAFEEKSTLLRLLERAL EARGVRIFIGSEGLLSGLDGLTAVTASYGGQDSPSGALAVIGPTRMDYSKVIATVDYT ARLVSRIIDSRGD" misc_feature complement(2288067..2289086) /locus_tag="Deba_2064" /note="heat-inducible transcription repressor; Provisional; Region: hrcA; PRK00082" /db_xref="CDD:178849" misc_feature complement(2288883..2289083) /locus_tag="Deba_2064" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2288109..2288774) /locus_tag="Deba_2064" /note="HrcA protein C terminal domain; Region: HrcA; pfam01628" /db_xref="CDD:145001" gene complement(2289161..2290009) /locus_tag="Deba_2065" /db_xref="GeneID:9494534" CDS complement(2289161..2290009) /locus_tag="Deba_2065" /note="KEGG: ade:Adeh_3450 WD-40 repeat-containing serine/threonin protein kinase; SPTR: Q2IF56 serine/threonine protein kinase with WD40 repeats" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808024.1" /db_xref="GI:302343495" /db_xref="GeneID:9494534" /translation="MKALFCFVDDAQFELDNFVENAAPAFGRAEFVCARTFAEAAEAI GSRVPVCFLLDILGGDSDFKPQLPTPQEMVKMLGKQPGVERLYAGVEKPTSAEANLLL RRVYAYVDRVQMAFRRAAGMMGQGRHYGLDNLAAAREAYPWAAALGYSRKALYADGVA MSMAGADGLLQKPQGEDDEAIALATRQLAPALARMVYGMVEGRLLRVAAPLALELQND PDKDMAALGRAMSRAVLSLLRGNEAGRMASGRGLEETLLAIKADGQAARTAVALASWL LSERSA" gene 2290185..2290532 /locus_tag="Deba_2066" /db_xref="GeneID:9494535" CDS 2290185..2290532 /locus_tag="Deba_2066" /note="COGs: COG5561 metal-binding protein; InterPro IPR014925; KEGG: dol:Dole_0580 hypothetical protein; PFAM: Protein of unknown function CGGC region; SPTR: A8ZU78 Putative uncharacterized protein; PFAM: CGGC domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808025.1" /db_xref="GI:302343496" /db_xref="GeneID:9494535" /translation="MKNVMIIGCGSYMDSGYGCPGEWRCLKAAAMGEGKFDEPVKVVA LVKCQCPGRSMVPNLGMAMKLSETRPDAVYLSSCMVGAKPACPHSTVEEKIAFIQEKT GLPVVIAGTHDYH" misc_feature 2290221..2290526 /locus_tag="Deba_2066" /note="CGGC domain; Region: CGGC; cl02356" /db_xref="CDD:154872" gene 2290682..2291575 /locus_tag="Deba_2067" /db_xref="GeneID:9494536" CDS 2290682..2291575 /locus_tag="Deba_2067" /note="COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR013785; KEGG: dal:Dalk_0090 radical SAM domain protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: B8FKI5 radical SAM domain protein; PFAM: radical SAM superfamily" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_003808026.1" /db_xref="GI:302343497" /db_xref="GeneID:9494536" /translation="MTLPEPQGFDYVGNCIRPPSEANSILIQATLGCSHNKCAFCGTY YDKRFGIKDRQTLEQDLRFAQKHCRRQDRVFVMDGDALIMPMAHWEWLLGQIREKLPW VRRVGSYANSKSIAMKSDDDLRRLRELGLGILYYGVESGHPDVLRDIKKGADPEKLIT QGRRAKAAGMKVSVTVLLGVGGAERSQEHARATGQLLTAMDPDYVGALTLMLIPGTPM GDAHAAGQFKLPDAKGMLMELREMLANTDLSDGLFFANHASNYLPIKAYLPADKQKAL ELIDGALSGRVGLKPEWMRAL" misc_feature 2290748..2291410 /locus_tag="Deba_2067" /note="Radical SAM; Region: Elp3; smart00729" /db_xref="CDD:128968" misc_feature 2290769..2291347 /locus_tag="Deba_2067" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(2290778..2290780,2290784..2290786,2290793..2290795, 2290799..2290807,2290913..2290915,2290916..2290921, 2291090..2291092,2291210..2291212,2291306..2291311) /locus_tag="Deba_2067" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene complement(2291664..2293061) /locus_tag="Deba_2068" /db_xref="GeneID:9494537" CDS complement(2291664..2293061) /locus_tag="Deba_2068" /note="KEGG: dsa:Desal_1340 hypothetical protein; SPTR: C6C206 Putative uncharacterized protein; manually curated" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808027.1" /db_xref="GI:302343498" /db_xref="GeneID:9494537" /translation="MPCCKAEEYDNWCAAEPTVEYEGEEYCIFHAPAECPEKQDVEAF NKKVFERIDKCKKDGEECDLRGAIFPGYISFSAYDKDNPLPNITFSQALFCNAVSFDS VTFGGISEFYDVRFDGYVNFAYAEFKGYVDFGLSIISESSSFMCAIFSSFCEFSQTEF CGRIDFLETIFCNICDFGHAIFNGHLDFTNSKFHQLVVFYAADQLDMSCDHTHFCGPV LFRDIKILSCRFDDCIIDKHIEFERADISRLSLLRAPIESMRFIDCIWPESKGRKVVY DSRSVQGQGYFPLFNVFGADRFSELNKPPEPGRLADLFRRLKKVARDGADEPLASDWH YAEKEMQRLDAKQNKRPWFALGLWLYKLVSGYGESPSRAGLWLVVLALLPWLAHECLD VIMKTLPRDPLPNVQTLAWLNAAFSTPKEYISASINHDATGCYLYTLWLRIYQTLLLV QAGLFGLAVRNKMRR" gene complement(2293178..2293447) /locus_tag="Deba_2069" /db_xref="GeneID:9494538" CDS complement(2293178..2293447) /locus_tag="Deba_2069" /note="COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504:IPR012677; KEGG: dma:DMR_11610 RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: C4XLR4 RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)" /codon_start=1 /transl_table=11 /product="RNP-1 like RNA-binding protein" /protein_id="YP_003808028.1" /db_xref="GI:302343499" /db_xref="GeneID:9494538" /translation="MGKSIYVGNLSFHSTEDSVRNLFEQYGAVQSVKVITDQETGRSR GFGFVEMDSDAAENAIRALNGADLDGRALKVNEARPRESRPPRRW" misc_feature complement(2293220..2293438) /locus_tag="Deba_2069" /note="RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA...; Region: RRM; cd00590" /db_xref="CDD:100104" misc_feature complement(order(2293304..2293306,2293310..2293312, 2293430..2293432)) /locus_tag="Deba_2069" /note="RNA/DNA binding site [nucleotide binding]; other site" /db_xref="CDD:100104" misc_feature complement(2293220..2293225) /locus_tag="Deba_2069" /note="RRM dimerization site [polypeptide binding]; other site" /db_xref="CDD:100104" gene 2293905..2294687 /locus_tag="Deba_2070" /db_xref="GeneID:9494539" CDS 2293905..2294687 /locus_tag="Deba_2070" /note="InterPro IPR017518:IPR017517; KEGG: dal:Dalk_2661 wyosine base formation; SPTR: B8FIW2 Wyosine base formation; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain; TIGRFAM: conserved hypothetical protein TIGR03084; uncharacterized Actinobacterial protein TIGR03083" /codon_start=1 /transl_table=11 /product="wyosine base formation" /protein_id="YP_003808029.1" /db_xref="GI:302343500" /db_xref="GeneID:9494539" /translation="MKAICADLRDEYEALDFIVEGLDANGWRTLTPFLGWDIHYEIAH IAYFDGTARLAATMPDDFNKHVQELFANLDKWDEIFGQVRDMPDQDLLQYWREQRNAL IAALEPMGPKDRLPWYGPPMSARSFAAARIMETWAHGQDVADALRVRRQATPRLRHIA HLGVTTYGWSFAVKGLAKPEAQIRVELSGPEGDLWAWGPEDAAQSIVGPAEDFCLVVT QRRNVADTALQPVGEAATQWMQVAQCFAGPPAHGPKPGERAW" misc_feature 2293908..2294663 /locus_tag="Deba_2070" /note="TIGR03084 family protein; Region: TIGR03084" /db_xref="CDD:132128" misc_feature 2293926..2294333 /locus_tag="Deba_2070" /note="DinB superfamily; Region: DinB_2; cl00986" /db_xref="CDD:197418" gene complement(2294755..2295015) /locus_tag="Deba_2071" /db_xref="GeneID:9494540" CDS complement(2294755..2295015) /locus_tag="Deba_2071" /note="KEGG: vex:VEA_002959 oligopeptide ABC transporter periplasmic oligopeptide-binding protein OppA; SPTR: Q87MY5 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter periplasmic oligopeptide-binding protein OppA" /protein_id="YP_003808030.1" /db_xref="GI:302343501" /db_xref="GeneID:9494540" /translation="MSAIGSYGNMSQQDVTALSAQLVEEAANASTMIRAFNRANEIIQ DPEKAGVSLRESMQATARFTVEVLNQDLKNKLGKGLNVDTQV" gene complement(2295098..2295685) /locus_tag="Deba_2072" /db_xref="GeneID:9494541" CDS complement(2295098..2295685) /locus_tag="Deba_2072" /note="KEGG: hypothetical protein; SPTR: A8IP46 Predicted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808031.1" /db_xref="GI:302343502" /db_xref="GeneID:9494541" /translation="MGEFHDEVSRNNGRFAPLPGDIGLTPGLALVRFCQTAPGEPATR AGHVFGFVGPGETLEALWRVRVLPWAGRRGPCEVWRRRGLSAAQRGAVAEAARAYAGR GYGWWKLAAHLADWFLAWALFGLSLGRRRGEAYVARRLLALERWPICSWVWARAYGQA LGLSLGEPGGCATPDGMRDYFMADPAWELIFRRAG" gene 2296005..2297417 /locus_tag="Deba_2073" /db_xref="GeneID:9494542" CDS 2296005..2297417 /locus_tag="Deba_2073" /note="COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: rpt:Rpal_2846 membrane bound O-acyl transferase MBOAT family protein; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: Q6N6N7 Putative alginate o-acetyltransferase AlgI; PFAM: MBOAT family" /codon_start=1 /transl_table=11 /product="membrane bound O-acyl transferase MBOAT family protein" /protein_id="YP_003808032.1" /db_xref="GI:302343503" /db_xref="GeneID:9494542" /translation="MVFSSPLFLFIFLPAVLGVYYLAPGRAKNYVLIAFSLAFYFWGE PSFVFVVLGSTLFDWLVVRAMHATTGHGRRKFLVFLGVLANVGILVYFKYMNFFADAV SALLVDLGLNPFVLAKIALPIGVSFVVFEKITYLVDVYRDVGKPARNFADYLLYVFFF PKLLAGPIIKYHDIADQLKRREHNLPNIQAGLSRFAVGLAKKVLIADTLAEVADFSFA ADPATLGPFFAWLGVICFTFQIYFDFSGYSDMAIGLARMFGFRLLENFNLPYISSNFT EFWRRWHISLSSWIRDYLYIPLGGNRVATGRMYFNLWFCFVLSGLWHGANWTFVLWGV YHGVFLVLDKLFWLRQGARLPKAVNIGATFFFLVLGWTLFRATDIGHFAGYMRAMLGL AADPAAFKYLTANIWFYLVLAAVLSLAPAWGRLWRLLPRYRAFALRVEFELSCSLALM LLVMGKLAALTFNPFIYFRF" misc_feature 2296047..2297189 /locus_tag="Deba_2073" /note="MBOAT family; Region: MBOAT; cl00738" /db_xref="CDD:193921" gene 2297421..2298848 /locus_tag="Deba_2074" /db_xref="GeneID:9494543" CDS 2297421..2298848 /locus_tag="Deba_2074" /note="KEGG: rpd:RPD_0465 alginate O-acetyltransferase AlgJ; SPTR: Q13DY6 Putative AlgJ protein, required for O-acetylation of alginate in Pseudomonas aeruginosa" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808033.1" /db_xref="GI:302343504" /db_xref="GeneID:9494543" /translation="MGFMGIGIQTAFSGALLGLLIYCLRIVLNYPAMFDWPRAVLLMI FGGMAGPVVFFGLYFAACRLPLIWGLRAAWLLRRWGGGALRGLLLTLCLALLILPLFN TALENWFDVRFAKNDQNVLYGVYSEKKPPAFRWAGLLDGSLQNQFGQYFNNSFSLRPI LIKLNNQFYYSVFAKSYMYDDAIVVGKKRWLYEEAYIRFQQNIANQTHIAHIERYAKQ LRELQDLLRKRGVTFLLLISPSKATTYPEYIPEQFHWFSRPGQLNQQMLMPLLDKYGV NYYDAQATALRWRDKAPATLFCQGGTHWNDLGAIYALQGMLAKLEKISGKKLTRLRLD GVDIDNKPIGFDRDLAELLNLYYQPYDFPTPHPKVTPLRDAATFTGDLALVGGSFNWI ILNLLHKYGVFDTMDFYYYFRTAFRSYHAGREPAPQSKIDVWTMDWDARIFNKDFVIV EMNSAVIPFGNYVSAFARGARQNDK" gene complement(2298861..2299607) /locus_tag="Deba_2075" /db_xref="GeneID:9494544" CDS complement(2298861..2299607) /locus_tag="Deba_2075" /note="COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: afw:Anae109_2230 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: A7HCI6 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, TrmH family, group 3" /protein_id="YP_003808034.1" /db_xref="GI:302343505" /db_xref="GeneID:9494544" /translation="MERRDDLIVGRHAVAEALADQAQTAIALLVVAGQRSEAVGRLVE AARAAGLKVEKIERRRLDQMAGGAVHQGVALRVAAQGRYAAWDELLAVLEEAGRRALV LVVDHVQDPHNLGAMLRSAAAAGALGVVVPKDRACQLTPAVAKAAAGALGQVAVCRVA NISQALAGLKEIGLWSVAAVARGGAAPWALDLRGPLAVVVGSEHKGVAPLVQKNCDML ATLPLAAGVESLNASVAAGVMLMEVVRQRS" misc_feature complement(2298867..2299592) /locus_tag="Deba_2075" /note="rRNA methylase, putative, group 3; Region: rRNA_methyl_3; TIGR00186" /db_xref="CDD:129290" misc_feature complement(2299371..2299589) /locus_tag="Deba_2075" /note="RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; pfam08032" /db_xref="CDD:149230" misc_feature complement(2298888..2299307) /locus_tag="Deba_2075" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene complement(2299609..2300217) /locus_tag="Deba_2076" /db_xref="GeneID:9494545" CDS complement(2299609..2300217) /locus_tag="Deba_2076" /EC_number="2.7.4.8" /note="COGs: COG0194 Guanylate kinase; InterProIPR020590:IPR008145:IPR008144:IPR001357:IPR 017665; KEGG: hha:Hhal_0976 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: A1WVP0 Guanylate kinase; TIGRFAM: guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase" /codon_start=1 /transl_table=11 /product="guanylate kinase" /protein_id="YP_003808035.1" /db_xref="GI:302343506" /db_xref="GeneID:9494545" /translation="MSATGQIFVLSGPPGAGKSTVGAMVRQNLPDLAYSVSFTTRAPR PGERDGVDYHFVDRQAFIQRLERGDILEHVEIFGNMYGTSAQVIDQTIGQGVDLFLDT DVNGGKALRGHYPQGVFIFIVPPSRAELERRLRQRGTETEDNIRLRLARVGYELAAAQ DYTHLVINDDLNKAAAQVEAIITTDRLRTERQLTRIKREWGL" misc_feature complement(2299669..2300208) /locus_tag="Deba_2076" /note="Thymidylate kinase [Nucleotide transport and metabolism]; Region: Tmk; COG0125" /db_xref="CDD:30474" misc_feature complement(2299681..2300199) /locus_tag="Deba_2076" /note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and...; Region: GMPK; cd00071" /db_xref="CDD:73180" misc_feature complement(order(2299975..2299977,2299990..2299992, 2300059..2300061,2300086..2300088,2300095..2300097, 2300116..2300118,2300164..2300166,2300182..2300184)) /locus_tag="Deba_2076" /note="catalytic site [active]" /db_xref="CDD:73180" misc_feature complement(order(2300164..2300166,2300182..2300184)) /locus_tag="Deba_2076" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:73180" gene complement(2300214..2300501) /locus_tag="Deba_2077" /db_xref="GeneID:9494546" CDS complement(2300214..2300501) /locus_tag="Deba_2077" /note="COGs: COG2052 conserved hypothetical protein; InterPro IPR007169; KEGG: dma:DMR_32850 hypothetical protein; PFAM: protein of unknown function DUF370; SPTR: C4XJM9 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF370)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808036.1" /db_xref="GI:302343507" /db_xref="GeneID:9494546" /translation="MPSKLLNVGFGNSLAAKRVVAILTPASAPMKRLREEAKAAERLL DATQGRKTRSIIITDTGHVVLSAIQAETMAQRFEQTIHDDQQIPLGEAPRK" misc_feature complement(2300265..2300501) /locus_tag="Deba_2077" /note="Domain of unknown function (DUF370); Region: DUF370; cl00898" /db_xref="CDD:186245" gene complement(2300512..2301390) /locus_tag="Deba_2078" /db_xref="GeneID:9494547" CDS complement(2300512..2301390) /locus_tag="Deba_2078" /note="COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527:IPR013551:IPR005229; KEGG: gem:GM21_1049 YicC domain protein; PFAM: domain of unknown function DUF1732; YicC domain protein; SPTR: C6E2G4 YicC domain protein; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808037.1" /db_xref="GI:302343508" /db_xref="GeneID:9494547" /translation="MIKSMTGYGRGQSTALDGQWIVEIRTVNSRFLDIHLRAPSGLAA LEDRIKKFLAARLSRGRVSITISASGAAEPVPRLVLNRPLFKQYRQIVRELEQELGVS GNGNVWPYINCREMILTMDADPDMDVYWAQLEPAMLAALDELDAMRAAEGDSLRRDFL ERLERLEGFFGQAAARSPQIVENYRQRLTERIGKLLDEGRADPERLALEVAIIADKCD ITEEAVRAASHLEQFRAFLEAGEPVGRKLDFLLQELNREANTMGSKSPDAQASAMVVE MKAELERLREQVQNIE" misc_feature complement(2300515..2301390) /locus_tag="Deba_2078" /note="hypothetical protein; Provisional; Region: PRK11820" /db_xref="CDD:183325" misc_feature complement(<2301082..2301387) /locus_tag="Deba_2078" /note="YicC-like family, N-terminal region; Region: YicC_N; pfam03755" /db_xref="CDD:146410" misc_feature complement(2300515..2300766) /locus_tag="Deba_2078" /note="Domain of unknown function (DUF1732); Region: DUF1732; pfam08340" /db_xref="CDD:149411" gene complement(2301387..2301935) /locus_tag="Deba_2079" /db_xref="GeneID:9494548" CDS complement(2301387..2301935) /locus_tag="Deba_2079" /note="KEGG: dol:Dole_1913 GTP-binding protein; SPTR: A8ZSI0 Conserved hypothetical GTP-binding protein" /codon_start=1 /transl_table=11 /product="GTP-binding protein" /protein_id="YP_003808038.1" /db_xref="GI:302343509" /db_xref="GeneID:9494548" /translation="MAKAPEPATLVISLLAREEAPRLAAIRALAELCGPLERLSAPMA FGQTIYYEPEMGLGLDRRLAVFERPTPLHELARIKKQCMALEVSLAREGRRAVNIDPG LLTADGLILATHKYQGHRLPLGLDLYCELTLFFQRGRYRALAWTYSDYAGDEMTRLLA LIRERHLWRLKRRAAADSGEDQ" gene complement(2301971..2303275) /locus_tag="Deba_2080" /db_xref="GeneID:9494549" CDS complement(2301971..2303275) /locus_tag="Deba_2080" /EC_number="1.1.1.22" /note="COGs: COG1004 UDP-glucose 6-dehydrogenase; InterProIPR001732:IPR014026:IPR014027:IPR016040:IPR 008927:IPR013328:IPR017476; KEGG: tye:THEYE_A0998 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: B5YKR5 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase" /codon_start=1 /transl_table=11 /product="nucleotide sugar dehydrogenase" /protein_id="YP_003808039.1" /db_xref="GI:302343510" /db_xref="GeneID:9494549" /translation="MNICVVGVGYVGLVTGTCFAEFGLNVTCVDNDPKKIDMLLGGKV PIFEPGLEELVAKNTREGRLHFTTELDKGVANALVVFIAVGTPQGDDGAADLHYVWDV AQAIGQNMQDYKVVVTKSTVPVGTGKKVAEIIQRSQKRPIPFDVVSNPEFLREGSAIE DFMRPNRVVVGAASEQAKAIMKDLYAPLYLIETPFVITDVETAEMIKYASNAFLATKI SFINEMANICELVGADVQVVAKGMGLDRRIGPKFLHAGPGYGGSCFPKDTEAIAHLAK ENDYRFQIVEAVMEVNRRQRLVMADKVIKALGGQVAGKVIACLGLTFKPNTDDMREAP SLVILPTLMEMGATIRAYDPAGMEAAAPMLPGVEMRKNSYDAVEGADAMILMTEWNQF RNLDLARIKGLMRQPVICDLRNVYQPERLREAGFTYFSVGRR" misc_feature complement(2302019..2303275) /locus_tag="Deba_2080" /note="Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]; Region: Ugd; COG1004" /db_xref="CDD:31208" misc_feature complement(2302391..2302678) /locus_tag="Deba_2080" /note="UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984" /db_xref="CDD:144540" misc_feature complement(2302022..2302327) /locus_tag="Deba_2080" /note="UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Region: UDPG_MGDP_dh_C; pfam03720" /db_xref="CDD:190725" gene complement(2303325..2304593) /locus_tag="Deba_2081" /db_xref="GeneID:9494550" CDS complement(2303325..2304593) /locus_tag="Deba_2081" /note="InterPro IPR018271:IPR007016; KEGG: tye:THEYE_A0427 O-antigen polymerase family; PFAM: O-antigen polymerase; SPTR: B5YJ59 O-Antigen polymerase family; PFAM: O-Antigen ligase" /codon_start=1 /transl_table=11 /product="O-antigen polymerase" /protein_id="YP_003808040.1" /db_xref="GI:302343511" /db_xref="GeneID:9494550" /translation="MAMNISSPIFSDRERLSETLFRLCRVSLLTLIIILPMEAITAAR EVAMAGFAFLLAASYAARGDWTFRKSALFLPLAFYAFCAVFSLVSAVDFGYSLSEVRS EIIKPLIIFYAALHFVHDEGLLRQALAAVVAGAAIMTFMGVALFFVDGGSLLHHDLRA GSLHNGYGTFSTYLVTIWPYLLISPLVFTERRQRRLIAAVAVCAVLAAYLSYSRACWL SMLVELVLMVIVFSRQRLRIAAVGLLVLALLAASLLLLPGSRHGEDWRALDRIVSDPE EVGGTAGDLVTVWRHTIAQIARRPLEGVGLGRNSFSKAFPEFRDSNQPLLWHAHNMFL DAAVQMGLQGLLALLWLLGLAFWSCWPKAPPAAGRVGDLFKAATAVMIAGFALRNMSD DFFADDSALMVYLLIGLAMGAIEAGRRAKQ" misc_feature complement(2303574..2303969) /locus_tag="Deba_2081" /note="O-Antigen ligase; Region: Wzy_C; cl04850" /db_xref="CDD:194980" gene complement(2304601..2305635) /locus_tag="Deba_2082" /db_xref="GeneID:9494551" CDS complement(2304601..2305635) /locus_tag="Deba_2082" /note="COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611:IPR011913; KEGG: sfu:Sfum_3634 ribokinase-like domain-containing protein; PFAM: PfkB domain protein; SPTR: A0LPF2 PfkB domain protein; TIGRFAM: rfaE bifunctional protein; PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I" /codon_start=1 /transl_table=11 /product="rfaE bifunctional protein" /protein_id="YP_003808041.1" /db_xref="GI:302343512" /db_xref="GeneID:9494551" /translation="MKFQFDIDRMKYAVERFATARILVLGDVMLDQFIWGRVTRISPE APVPVVEVDQETHMLGGAANVVHNLAALGCRTLLCGLVGDDAAGRQVLDLLDDLDVPC EGVIVSDQRPTTKKTRVVAHSQQVVRVDREHRLPARDAEVEALRAYLKAELPDCDAVI VSDYAKGVISGPLLEPLMKMASKGQKIVTVDPKVSNMALYAGATVITPNHHEALAAAR VSTDEPSAVIKAGRRLLMELDARHVLVTQSERGMTLFSHGAEAHIPTMAKKVYDVTGA GDTVISTLTLGLVAGLTPIDAAAMANFAAGVVVGEVGTSAVTAGRLARALDENAHVLA QCAQCNNTRE" misc_feature complement(2304664..2305575) /locus_tag="Deba_2082" /note="RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer...; Region: RfaE_like; cd01172" /db_xref="CDD:29356" misc_feature complement(order(2304802..2304807,2304811..2304813, 2305381..2305383,2305387..2305389,2305444..2305446, 2305453..2305458,2305549..2305551,2305555..2305557)) /locus_tag="Deba_2082" /note="putative ribose interaction site [chemical binding]; other site" /db_xref="CDD:29356" misc_feature complement(order(2304709..2304711,2304721..2304723, 2304727..2304729,2304832..2304834,2304838..2304840, 2304892..2304894,2304898..2304900,2305000..2305002, 2305009..2305011)) /locus_tag="Deba_2082" /note="putative ADP binding site [chemical binding]; other site" /db_xref="CDD:29356" gene complement(2305632..2306729) /locus_tag="Deba_2083" /db_xref="GeneID:9494552" CDS complement(2305632..2306729) /locus_tag="Deba_2083" /note="COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: tye:THEYE_A0426 glycosyl transferase, family 9; PFAM: glycosyl transferase family 9; SPTR: B5YJ58 glycosyl transferase, family 9; PFAM: glycosyltransferase family 9 (heptosyltransferase)" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 9" /protein_id="YP_003808042.1" /db_xref="GI:302343513" /db_xref="GeneID:9494552" /translation="MSFLSRLCNVFVLRRWGDDPGPYDPAQVAKILVVRNDNIGDVIC TTPMLDALRRAFPRARIAAVVCTLTEEAISGHRALDKLWTYPKAKHGQYGKLRSLGLL WRMLGRIRRERYDLVLAPRSLFSSSQAWLAYASGGRWRFGPEAKDKKKRWGFFYNRPV AWPPKGIHEVMRCFDLLGHIGVDNPEKKLFLDVPEQAQATVAEFLRQHGLDRRPGPLV INVTRWQYSAFRRWPEERYRRLVEILLERPEGLVITHAPADGPWVAQLMGGLLDRAPV FWSPRLKEFAAIIKAASVFVTVEGGPMHIAAAVGAPQVVIWSKRTPLDVWFPWNAPFL PLKAEGTVEEIQVEQVVAGVEELLQTSQVVR" misc_feature complement(2305644..2306642) /locus_tag="Deba_2083" /note="ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859" /db_xref="CDD:31200" misc_feature complement(2305734..2306642) /locus_tag="Deba_2083" /note="Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789" /db_xref="CDD:99964" misc_feature complement(order(2305815..2305817,2305824..2305829, 2305836..2305838,2305872..2305877,2305968..2305970, 2306070..2306072)) /locus_tag="Deba_2083" /note="putative active site [active]" /db_xref="CDD:99964" gene complement(2306733..2307869) /locus_tag="Deba_2084" /db_xref="GeneID:9494553" CDS complement(2306733..2307869) /locus_tag="Deba_2084" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: rrs:RoseRS_0847 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5URK7 glycosyl transferase, group 1; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003808043.1" /db_xref="GI:302343514" /db_xref="GeneID:9494553" /translation="MKWALYNLTSTTQSGGVETGVWRLARAFAEMGQDVVVIGGASQR PLPAAAQGLEVKTFAFRDRQRFPDLGSRARKLLERLSLAHNAFEELRHGGYDRLVVFK TYDVGPALWAARGGAAKVGYLSGGTEYYPGYAWLGRRLDYLASVSQHNAQQMARATGL RPAVNYLGVDGDCFRPTAPDEALARLAGLTAGDEVIVTAVRLVALKGVQRAMQAVALL AGRRPRLKLLVAGEGPYLPDLQRQVDELGLVGRVCFVGYLPQERLAGFYALGRLAAFP SLGEEALGLSAGEALACGLPVVASDLGGLPEVVGEGGILVKPRDVEGLARAFERLLDD VDLARAMARRGGERIGRLFTWRACAQRMIDGFATGVGSAARRGE" misc_feature complement(2306778..2307869) /locus_tag="Deba_2084" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature complement(2306778..2307860) /locus_tag="Deba_2084" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" gene complement(2307866..2309041) /locus_tag="Deba_2085" /db_xref="GeneID:9494554" CDS complement(2307866..2309041) /locus_tag="Deba_2085" /note="COGs: COG0438 glycosyltransferase; InterPro IPR018062:IPR001296; KEGG: acr:Acry_1805 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5FZH6 glycosyl transferase, group 1; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003808044.1" /db_xref="GI:302343515" /db_xref="GeneID:9494554" /translation="MRLAYLYPEHLGRVQARVLQMAATLRAMAGLGARVHLLVGAFRG LDRRVADLGLGPGSGVTIEPVAMLQKGPGSSAPFSWHGVYHQAALARLRRLTKAGGLD GLMVRHLKLADFLLARRAAHGLPLLYEAHEIFAQTAAEEGLGGAKLARLAALERRVLA EADRVVAISRPLAQALEAEGLARGPLAVAPSGVDESFFAVGQDGRDGALVAYAGGLGR WKGVDLLLKAAMLTPSIRLEILGGDEGGADWRGLAALANDPALAGRVTMRPRAGQEAV RELLSRAGVAVWPGAAGQRIAAEFTSPLKLFEYLAAGCAVIAPDTPAARAVVTHGRQA LLFKPDDPAALAAALERLAADQTLAGELGRAGRELARSYAWPARAAVVLAELEDIAR" misc_feature complement(2307881..2309038) /locus_tag="Deba_2085" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" gene complement(2309046..2310038) /locus_tag="Deba_2086" /db_xref="GeneID:9494555" CDS complement(2309046..2310038) /locus_tag="Deba_2086" /note="COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dar:Daro_0157 glycosyl transferase family protein; PFAM: glycosyl transferase family 9; SPTR: Q47JR5 glycosyl transferase, family 9; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 9" /protein_id="YP_003808045.1" /db_xref="GI:302343516" /db_xref="GeneID:9494555" /translation="MNRPAALAVCTTAIGDTLLSIPALDSLGKVYDLDVLVHQHRLPL LLNQPNIRQLFSYRNNPFFRLSLAWRMRDQHYESIVVMHANDDIWRLLPKLSYDAAYN IQGWRSEALRTTAIDLPPTMHVVDKRLLMAKEAGGAPTNQTAPRIYLSEAEVAEAEKW LVDNGLGSSQKRVAIVPGAANLFKRWPARRFGLVARELLLRGVGIYCVGTGSEKELFQ EIDAVARTHLPCLLDVPLRRLAAGISRADILLTNDTGPLHLGQAVGTPVLGLFGPTDP ATIGPRGAMHRVLKVERTCDPCTTKRCKDPKCMRELKVEQVMELMNEMLAKSEV" misc_feature complement(2309052..2310023) /locus_tag="Deba_2086" /note="ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859" /db_xref="CDD:31200" misc_feature complement(2309070..2310020) /locus_tag="Deba_2086" /note="Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789" /db_xref="CDD:99964" misc_feature complement(order(2309262..2309264,2309271..2309276, 2309283..2309285,2309319..2309324,2309415..2309417, 2309511..2309516)) /locus_tag="Deba_2086" /note="putative active site [active]" /db_xref="CDD:99964" gene complement(2310035..2311141) /locus_tag="Deba_2087" /db_xref="GeneID:9494556" CDS complement(2310035..2311141) /locus_tag="Deba_2087" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: dar:Daro_0153 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: B9YYN8 glycosyl transferase group 1; PFAM: glycosyl transferases group 1" /codon_start=1 /transl_table=11 /product="glycosyl transferase group 1" /protein_id="YP_003808046.1" /db_xref="GI:302343517" /db_xref="GeneID:9494556" /translation="MRVGLIRQKYDSAGGAEKTLLLLAEGLLARGHEVHVVAVDWQGP RPDGLKLHLVELEHHSGRAAMLEWALTARARMIQTGVETFLSLERVPGSPVVRAGDGC HAAWLARRGRFCSALKRASFRFNPKHRAFLELERRTFASAALELVIANSRMVADELGQ YCGVAKSKITVIYNGVDEARLAAARLAATRDRARDELALTRPTLLFLGSGFQRKGLAF AIEALALLPEAELLVVGKDRVGAFKRQAGRLGLERRVRFMGQRKDVDMLLAGADAMVL PTIYDPCANACLEALWAGLPVVTTTANGAAELIDPGLGGGIVQRPDDARALAEACRRA LGLERGFAARVPSQDQWLSQTIAALEGRAERILP" misc_feature complement(2310173..2311048) /locus_tag="Deba_2087" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" gene complement(2311126..2312208) /locus_tag="Deba_2088" /db_xref="GeneID:9494557" CDS complement(2311126..2312208) /locus_tag="Deba_2088" /note="COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011916; KEGG: sfu:Sfum_0370 lipopolysaccharide heptosyltransferase III, PFAM: glycosyl transferase family 9; SPTR: B9YYN7 Lipopolysaccharide heptosyltransferase III; TIGRFAM: lipopolysaccharide heptosyltransferase III; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase III" /codon_start=1 /transl_table=11 /product="lipopolysaccharide heptosyltransferase III" /protein_id="YP_003808047.1" /db_xref="GI:302343518" /db_xref="GeneID:9494557" /translation="MERRLARAPRRALVIKLGHIGDVLVTTPVIAALHRAFPGVEVTA VVNQGTEDMLRHNPQVSRLRVVRRDLKGLAGLAEQAGLLAGLWREHFDLSLELSGGDR GAWLSLAGRAKLRVGFEPKKPHMRARAFHLLVDQRGTQDHVVRTFLRQIRAIGVEPSD DRLRFEPGPAARHEVARLLADHGLRPGRYVALHPTSRWMFKSWTPEGNAAVAEHLLGL GLDVALSAAPAPAEMAFVARLKDILGPRPGLVDLSGRLDLLGLGALIDGARLFFGVDS APMHMAAALGRPTAVLFGPSGEKMWGPWRVESEVITGDCPQRPCGRDGCDGSKISRCL VEIAPARVCQALDGLLARTESSCASA" misc_feature complement(2311156..2312169) /locus_tag="Deba_2088" /note="ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859" /db_xref="CDD:31200" misc_feature complement(2311168..2312169) /locus_tag="Deba_2088" /note="Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789" /db_xref="CDD:99964" misc_feature complement(order(2311366..2311368,2311375..2311380, 2311387..2311389,2311423..2311428,2311534..2311536, 2311630..2311635)) /locus_tag="Deba_2088" /note="putative active site [active]" /db_xref="CDD:99964" gene complement(2312211..2312387) /locus_tag="Deba_2089" /db_xref="GeneID:9494558" CDS complement(2312211..2312387) /locus_tag="Deba_2089" /note="InterPro IPR005651; KEGG: dol:Dole_1914 hypothetical protein; PFAM: protein of unknown function DUF343; SPTR: A8ZSI1 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808048.1" /db_xref="GI:302343519" /db_xref="GeneID:9494558" /translation="MAINQELLELLVCPKCKGRLDADPQWRWLDCPACALRYEVRDNI PIMLVEEAKPLAKG" misc_feature complement(2312220..2312369) /locus_tag="Deba_2089" /note="Trm112p-like protein; Region: Trm112p; cl01066" /db_xref="CDD:194025" gene complement(2312377..2313441) /locus_tag="Deba_2090" /db_xref="GeneID:9494559" CDS complement(2312377..2313441) /locus_tag="Deba_2090" /note="COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011908; KEGG: tye:THEYE_A0945 lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; SPTR: A1HRG7 Lipopolysaccharide heptosyltransferase II; TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase II" /codon_start=1 /transl_table=11 /product="lipopolysaccharide heptosyltransferase I" /protein_id="YP_003808049.1" /db_xref="GI:302343520" /db_xref="GeneID:9494559" /translation="MRILLVKLSALGDVVQSLPVAMAIKAQDPSARVDWLVEPPAAPL LQGHPALERVIVSPRKGPAGSLWQKAGRMVGFRRALASVRYDAVVDLQGLIKSAILVS LCRSERKIGFAGGKEPAAALALNERLPAYDPDRHALLRYLDLLEPLGYQRPAQVQYGL WPSAEEERAVDELLAGWDQARPLILLHPVALWPSKLWPLEHWVELTRLLVEAGVNVGV SGAAGDTAWGRAMVAGWTGAASAPRDFTGRTDLRVLAALQRRARAVVSTDTGAMHLAA AMGAPTLALFGPTAPWRTGPFGAGHQIIRLGLECGPCFRRGCDNPRCMNEITATAVAE RVAEMLAGPAARAKELVHGH" misc_feature complement(2312419..2313441) /locus_tag="Deba_2090" /note="ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859" /db_xref="CDD:31200" misc_feature complement(2312428..2313438) /locus_tag="Deba_2090" /note="Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789" /db_xref="CDD:99964" misc_feature complement(order(2312620..2312622,2312629..2312634, 2312641..2312643,2312677..2312682,2312785..2312787, 2312881..2312886)) /locus_tag="Deba_2090" /note="putative active site [active]" /db_xref="CDD:99964" gene complement(2313438..2314025) /locus_tag="Deba_2091" /db_xref="GeneID:9494560" CDS complement(2313438..2314025) /locus_tag="Deba_2091" /note="COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR005834:IPR006543:IPR006549; KEGG: ppd:Ppro_2549 HAD superfamily hydrolase; PFAM: haloacid dehalogenase; SPTR: A1AS33 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase family domain" /codon_start=1 /transl_table=11 /product="histidinol-phosphate phosphatase family protein" /protein_id="YP_003808050.1" /db_xref="GI:302343521" /db_xref="GeneID:9494560" /translation="MHDHAKRRAVFIDRDGTINEEVNYLGRPEDARLLPGVAQAMASL SRAGLAVVVVSNQSGLARGYFGEDDLRAVRFELAAQLARQGARVDGWYHCPHHPEGVV AHLAVECDCRKPAPGLILRAAKELGLELDGSFMVGDRLRDVACGKAVGLGCVLVRSGQ DDGPPTGPHETPDFVADDLAQAARWILERLAEDQA" misc_feature complement(2313558..2314001) /locus_tag="Deba_2091" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature complement(order(2313858..2313863,2313981..2313989)) /locus_tag="Deba_2091" /note="active site" /db_xref="CDD:119389" misc_feature complement(2313972..2313989) /locus_tag="Deba_2091" /note="motif I; other site" /db_xref="CDD:119389" misc_feature complement(2313861..2313863) /locus_tag="Deba_2091" /note="motif II; other site" /db_xref="CDD:119389" gene complement(2314018..2315106) /locus_tag="Deba_2092" /db_xref="GeneID:9494561" CDS complement(2314018..2315106) /locus_tag="Deba_2092" /note="COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011910; KEGG: gsu:GSU2256 ADP-heptose--LPS heptosyltransferase II, PFAM: glycosyl transferase family 9; SPTR: Q74AU4 ADP-heptose--LPS heptosyltransferase II, TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II" /codon_start=1 /transl_table=11 /product="lipopolysaccharide heptosyltransferase II" /protein_id="YP_003808051.1" /db_xref="GI:302343522" /db_xref="GeneID:9494561" /translation="MAKRGLTPPERVLVRAVNWVGDAVMTLPAMDQLARACPGAAIDV LAKPWVAAVYRGHPAVRQVLTLESEGRHKGLMGRLRLARWLAGRGYDWAVLWQNAFDA ALIAWLAGIPRRIGYARDGRRPLLTTAVPCPPAARAIHETSYYLRMLAGAGLMDHLPP DEGVRPELRPRPEDLAWADGFIAGRGLGGRPLIGVAPGAAFGPAKCWPAANFAAAAAA LAGELGAGVLLFGSQGEAGATGRVAALLGQRPHADLAGATDLGQALALLARLRLLLTN DSGLMHAAAALGVATVAVFGSTNPATTAPLGPRVALARKDVCPQAPCKKPVCPLGDPR CLSAVEPAEVVATARRLLAKPAAEQDHA" misc_feature complement(2314042..2315082) /locus_tag="Deba_2092" /note="ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859" /db_xref="CDD:31200" misc_feature complement(<2314696..2315076) /locus_tag="Deba_2092" /note="Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789" /db_xref="CDD:99964" misc_feature complement(2314057..>2314611) /locus_tag="Deba_2092" /note="Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789" /db_xref="CDD:99964" misc_feature complement(order(2314258..2314260,2314267..2314272, 2314279..2314281,2314315..2314320,2314420..2314422, 2314516..2314521)) /locus_tag="Deba_2092" /note="putative active site [active]" /db_xref="CDD:99964" gene complement(2315106..2316020) /locus_tag="Deba_2093" /db_xref="GeneID:9494562" CDS complement(2315106..2316020) /locus_tag="Deba_2093" /note="COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: sfu:Sfum_0376 lipid A biosynthesis acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: A0LF74 Lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis acyltransferase" /protein_id="YP_003808052.1" /db_xref="GI:302343523" /db_xref="GeneID:9494562" /translation="MGGGAMKAAYKILFGVAWLLSWLPLWLMRWFGRLTGRLVFTLDR RHRQIMLDNLALSFPGKSPAELRKLALSCLRHICSAFFEMPRLVRYSPAQAAAMVRVH GKERLDRAQARGRGVILLTGHIGNWEWMNAASIAIINSPALVVARPIDWPPADRLVNY WRCKDGSRIVAKDSSARSLLRELRAGGYIALLLDQNVDWYDGEWVDFFGRPACSNKGA ALLAMKTKAAVVPVWCARGPDGKFDIFVGEELPLVDTGHKTQDVWDNTQNYQRALEDI IRQRPEQWFWLHQRWKTKPYHPWPREKR" misc_feature complement(2315145..2315960) /locus_tag="Deba_2093" /note="Predicted acyltransferase [General function prediction only]; Region: COG4261" /db_xref="CDD:33984" misc_feature complement(2315145..2315726) /locus_tag="Deba_2093" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984" /db_xref="CDD:153246" misc_feature complement(order(2315430..2315438,2315574..2315585, 2315637..2315639,2315643..2315645,2315652..2315654)) /locus_tag="Deba_2093" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153246" gene complement(2316002..2317123) /locus_tag="Deba_2094" /db_xref="GeneID:9494563" CDS complement(2316002..2317123) /locus_tag="Deba_2094" /EC_number="2.7.1.130" /note="COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; InterPro IPR003758; KEGG: sfu:Sfum_0346 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: A0LF44 Tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase" /codon_start=1 /transl_table=11 /product="tetraacyldisaccharide 4'-kinase" /protein_id="YP_003808053.1" /db_xref="GI:302343524" /db_xref="GeneID:9494563" /translation="MAVNGQDLLRMVASGQAGPWWLSGLRAACRAGAALYGAGAWLDR LAHERGGKKRLRLPGPLIGVGNLAVGGAGKTPLTLEIVRRLTRLGAPAAVMSRGYGRR STAGVSWVWREGRLLADAHEAGDEPVLLARRLGVPVAVGADRHAVGLALLAHCPDCVL VADDLFQHHRLHRDLDIVALDASDPLGGGFVLPRGLLREPPTALARADALVLTKVAGP EQIERATRLVEPYLRPGAPLLACAYRVDSFCGPHGQTVAATQLRGRKAAAFCGLARPE SFARTLEGLGLEIAAFTTFADHHFFTADELRAVWRAAEKAGAQMIVCTEKDRARLIDQ PPMTGPPLYSTVLDVDFGDDSPRLDVLLRGGLEQWAVAR" misc_feature complement(2316071..2317003) /locus_tag="Deba_2094" /note="Tetraacyldisaccharide-1-P 4'-kinase; Region: LpxK; cl03652" /db_xref="CDD:186597" gene complement(2317113..2318405) /locus_tag="Deba_2095" /db_xref="GeneID:9494564" CDS complement(2317113..2318405) /locus_tag="Deba_2095" /note="COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: dal:Dalk_0350 three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; SPTR: B8F927 3-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonic-acid transferase domain protein" /protein_id="YP_003808054.1" /db_xref="GI:302343525" /db_xref="GeneID:9494564" /translation="MLALVYNALLTLGLALCAPWLALRLLRADSRRVALARLGLGRRW LPAPPPPGGLWLHALSVGEVRSAVPLLRGLAARFPRRPLIFSVGTAQGLAMARQQLAG MEVTTLVRPLDAPWAVGRLLDVLRPALFCLVEGDIWPAWQWALARRGAPRLLVNGRVS PRTFKSYRRAPALARGLFAGFDRVLAQTETDRQRLAAIGVGDDRLAVGGNLKFDSAPA PLDRAAIARIAHDLGLVGRPVVVAGSTHQGEEEPCLEALAALKDQWPDLALLLAPREV RRGGAVARLAAERGFRVARVSQGRPPEGCDVVVLDVLGRLAQAYAIGRAAFVGGSLCA VGGHNLLEPAAQGVPVVFGPVVHNFLEMAQMLEDIGGGARIQSGDELLAVWRELLAEP LKAAAMGRAGREFCQAHRGAVARAVEEAASLLERAHGC" misc_feature complement(2317173..2318228) /locus_tag="Deba_2095" /note="3-deoxy-D-manno-octulosonic-acid transferase; Reviewed; Region: PRK05749" /db_xref="CDD:180233" misc_feature complement(2317755..2318228) /locus_tag="Deba_2095" /note="3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); Region: Glycos_transf_N; pfam04413" /db_xref="CDD:190976" gene complement(2318405..2319361) /locus_tag="Deba_2096" /db_xref="GeneID:9494565" CDS complement(2318405..2319361) /locus_tag="Deba_2096" /note="InterPro IPR002509:IPR011330; KEGG: gme:Gmet_0882 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Q39XA0 polysaccharide deacetylase; PFAM: polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_003808055.1" /db_xref="GI:302343526" /db_xref="GeneID:9494565" /translation="MAELMTMAARRPQGPLVALKVDVDTKIGMVEGVPRLMAILRRFG LKASFYLSVGPDHSGRALKRLFRPGFLRKQLNSGAAVAYGPVTMLYGLVLPGPIIARQ APELFGLLLAQGHEVGLHAWDHVHWHDRVRGLSFEATKRQFDLGRELFTQTAGFAPMS FAAPGWQVTTQALQIMAQAGVTHTSCARGGRPFRPLGPDGPLPLVELPSTMPTMDEVL GLGLAGPDDIGRWLAEQVRDDELNVFTLHAEVEGRALAGAFEEMLEALTARGARFVRL VEAARLAALEPLPVEGLVWGPLAGRAYDVVMPASQNPGGEPA" misc_feature complement(2318816..2319322) /locus_tag="Deba_2096" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene complement(2319361..2320305) /locus_tag="Deba_2097" /db_xref="GeneID:9494566" CDS complement(2319361..2320305) /locus_tag="Deba_2097" /note="COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: gme:Gmet_0885 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q39X97 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003808056.1" /db_xref="GI:302343527" /db_xref="GeneID:9494566" /translation="MDNASEAAGPNLSVVIPVFNEEENLAALQERLRRVLDGAGYDWE IIYVDDGSRDRSWEILCSFNQQDHRVRLVRFNRNYGQHMAVFAGMERSKGQVVVTLDA DLQNPPEDIPKLVDKIDEGYDVVGGWREHRQDSWLRTLPSAIVNRLTSRVTGVDLKDY GCMLRAYRRQVVEAMNACEEASSFIPALANSFANSVAEIPVGHAQRGGGQSKYGLYRL LKLHFDLMTGFSVLPIQFVSFMGLIIALVGVGFGAFLFVRRLVVGPELEGVFTLFAIL FTFVGLQIFCVGLIGEYVGRIYREVRKRPRYLVREMRG" misc_feature complement(2319364..2320275) /locus_tag="Deba_2097" /note="undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714" /db_xref="CDD:182669" misc_feature complement(2319739..2320266) /locus_tag="Deba_2097" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature complement(order(2319997..2319999,2320249..2320251, 2320255..2320257)) /locus_tag="Deba_2097" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133030" misc_feature complement(order(2319997..2320002,2320156..2320158)) /locus_tag="Deba_2097" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature complement(2319997..2320005) /locus_tag="Deba_2097" /note="DXD motif; other site" /db_xref="CDD:133030" gene complement(2320398..2322113) /locus_tag="Deba_2098" /db_xref="GeneID:9494567" CDS complement(2320398..2322113) /locus_tag="Deba_2098" /note="COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: gme:Gmet_0887 glycosyl transferase family protein; PFAM: glycosyl transferase family 39; SPTR: Q39X95 glycosyl transferase, family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 39" /protein_id="YP_003808057.1" /db_xref="GI:302343528" /db_xref="GeneID:9494567" /translation="MSPRVKDQRPPWAEAVYWLTLAALCGALFFGALGARTLWETDEA RYAEIGREMLDAPSWQWWVVPRLNYVKYMEKPPLPYWLIALSFKAFGVSDYSARLVPA VFGALSVLLTCLLGRWLWSMRAGFFAGLVLCTGLMFALLSQVLLVDMVLCFGVVLSLL GLWAMLQERWWGLYAFWLGCAFGFLTKGLLGPGLAGLAALIFLGLCGQWRKMLGLFDY RGVLLFAALCAPWLIAATVLEDGFIKYFFWDEQFGRLTTTVHQRHEPFWYYFALLPAA FFPWTMLWPAVVARLWPGRAWRAPQNRALLFCLVWFGSYFVFLTLSQSKMLHYALPML PPLALLTGRALAGMAEDGWALPAGRAVRWGLDALAGLMLLCAAAVPLAPQFAPEASYE RLGLAVFAVPLALAAAAFGVHLTRGKTWAAVAVPLAVFAMMAGGYLVASPLIDDYRSL AGLVRPIRDKLSPDDVLASYGDYYHGAVFYGRRRVMIVGNWGELDYGRQRDPQADKWF LAEGHRHEAVVKLARSPRRVFLLGETEKFQRLLDAKALDQAGVKLHQWARLGDKSLYV NRPRP" misc_feature complement(<2321127..2321999) /locus_tag="Deba_2098" /note="4-amino-4-deoxy-L-arabinose transferase; Provisional; Region: arnT; PRK13279" /db_xref="CDD:183943" misc_feature complement(<2321562..2321987) /locus_tag="Deba_2098" /note="Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT; cl01961" /db_xref="CDD:187915" gene complement(2322110..2323864) /locus_tag="Deba_2099" /db_xref="GeneID:9494568" CDS complement(2322110..2323864) /locus_tag="Deba_2099" /note="COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: tgr:Tgr7_3093 glycosyl transferase family 39; PFAM: glycosyl transferase family 39; SPTR: B8GQ15 glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 39" /protein_id="YP_003808058.1" /db_xref="GI:302343529" /db_xref="GeneID:9494568" /translation="MKWSNEAGLWLVAAVIVTLLAGLMFLADLGGLALTDRDEGEYAA TVGEMVRSGDYLVPTLNGRNYLEKPILIFWAIAGAQAVFGPGELAARLPSALPALAVI LLVGALAWRYGGLALGVMSAAACAFTPLFVLVGRASLTDMLLTLWITGALAAFFVAVE EQEPGRRRWWYLAAWAALGLGFLTKGPVAPAVVLPTALIYALCQRRLWPVLKTAQIHW GLLIFLVINLPWYGLVFLRLGGEFWDAFFVAQNLRRFSEVLLGHGGGFLLYPPVMLLG GFPFVAAALPELGRALGRNPATARAQDPLARLRLLAAIAALVVLVAFSLAATKQINYI LPAFPFLALLAGCYLLGLWKGQAGGRLARGVFGVALGFSGGLMTVAVLALPAGLPLFW DKIVASIRFDSSEYALPEAAPLVALWPILLGLTLGALLVGVWLAWRRGSLRLIPPILA SGALLGCAMLFFGLLPQVAQAIQEPAKQMALALKERAPADRVVSYGLWKPTMIFYLDR QIPRLRVEQQQELAVELAKAEPVWLLSRVALAQKLAAAPGFVELGRWGGYLLGGNQAA SARWRQGQAAPAAPGDPS" misc_feature complement(<2322980..2323828) /locus_tag="Deba_2099" /note="4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807" /db_xref="CDD:31992" gene complement(2323861..2324454) /locus_tag="Deba_2100" /db_xref="GeneID:9494569" CDS complement(2323861..2324454) /locus_tag="Deba_2100" /note="InterPro IPR000326:IPR016118; KEGG: tye:THEYE_A1814 lipid A 1-phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: B5K7V0 PAP2 superfamily protein; PFAM: PAP2 superfamily" /codon_start=1 /transl_table=11 /product="phosphoesterase PA-phosphatase related protein" /protein_id="YP_003808059.1" /db_xref="GI:302343530" /db_xref="GeneID:9494569" /translation="MPRSSLGRGLLLAALAAGLALVWLLGGDRLLADDLMYLKTGPIG HAWQFMAYWLGHGGVQAGAMGFLLLLGLAVRKLDLTPTALAAGGLLVQIVKHLVGRPR PGRNMLAWDLQGLSFDSDLHSFPSGHATTTFALAAVLAARFPRWSWAFYLAALFISLG RVVGGSHFVSDVLVGAMLGLVVGWLLAWRCKVGVGGR" misc_feature complement(2323942..>2324184) /locus_tag="Deba_2100" /note="PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cl00474" /db_xref="CDD:193835" misc_feature complement(order(2323942..2323944,2323954..2323956, 2323972..2323974,2324071..2324079,2324149..2324151, 2324170..2324172)) /locus_tag="Deba_2100" /note="active site" /db_xref="CDD:48084" gene complement(2324447..2326240) /locus_tag="Deba_2101" /db_xref="GeneID:9494570" CDS complement(2324447..2326240) /locus_tag="Deba_2101" /note="COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR003593:IPR001140:IPR003439:IPR 011527:IPR017940:IPR011917; KEGG: sat:SYN_01564 phospholipid-lipopolysaccharide ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: Q2LVL0 Lipid A export ATP-binding/permease protein msbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: lipid A export permease/ATP-binding protein MsbA" /codon_start=1 /transl_table=11 /product="lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA" /protein_id="YP_003808060.1" /db_xref="GI:302343531" /db_xref="GeneID:9494570" /translation="MSKKTTAREEAKLYSRLLARVKPYKYRLVFSMFLMAVAAGTQGA LAWLVKDLSDGIFMEKNQWMLYMVPVVVIVLYAVKGLSSYGQTYMMSYVGNRIVTEFR VELYTHLQRMPLGYFDRVATGELMSRITNDVNLIQGAVSNVVTGVFKDLFTAVALIAV VIYRDPMLSIVALGVFPVCVIPLVKLGRRLRSISTSSQETMADVNVLLHETIGGARIV KGFCREDHEARRFTREAYRLFDLRMKDVSTRAISSPLMEFLGGLAIAGIIFYGGWQVI SGQSTPGTFFSFLTALIMLYEPVKRMSNLNNEIQNGLAAAERVYQVLDTEPEIVDAPD AIQLPPMSRAVELKDVHFAYSAEKGEVLKGVSLLVPKGQAVALVGTSGGGKTTLVNLL PRFYEVTSGAVLIDDLDIRRVTMRSLRRQISIVTQQTILFNDTVRENIAYGRPEASDE EIVEAARAAYALDFIERMPQKFDTRIGEAGVMLSGGERQRLSIARAILADRPILILDE ATSSLDTESELYVQKALENLMRGRTTFVIAHRLSTVQRADRIVVVSGGKIVEEGRHEE LLANGGLYCKLHRMQFQIDSGLEGLESAGDA" misc_feature complement(2324495..2326204) /locus_tag="Deba_2101" /note="lipid A export permease/ATP-binding protein MsbA; Region: MsbA_lipidA; TIGR02203" /db_xref="CDD:131258" misc_feature complement(2325344..2326159) /locus_tag="Deba_2101" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(2324507..2325208) /locus_tag="Deba_2101" /note="MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic...; Region: ABCC_MsbA; cd03251" /db_xref="CDD:73010" misc_feature complement(2325083..2325106) /locus_tag="Deba_2101" /note="Walker A/P-loop; other site" /db_xref="CDD:73010" misc_feature complement(order(2324624..2324626,2324717..2324722, 2324960..2324962,2325080..2325088,2325092..2325097)) /locus_tag="Deba_2101" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73010" misc_feature complement(2324960..2324971) /locus_tag="Deba_2101" /note="Q-loop/lid; other site" /db_xref="CDD:73010" misc_feature complement(2324765..2324794) /locus_tag="Deba_2101" /note="ABC transporter signature motif; other site" /db_xref="CDD:73010" misc_feature complement(2324717..2324734) /locus_tag="Deba_2101" /note="Walker B; other site" /db_xref="CDD:73010" misc_feature complement(2324699..2324710) /locus_tag="Deba_2101" /note="D-loop; other site" /db_xref="CDD:73010" misc_feature complement(2324618..2324638) /locus_tag="Deba_2101" /note="H-loop/switch region; other site" /db_xref="CDD:73010" gene complement(2326237..2327379) /locus_tag="Deba_2102" /db_xref="GeneID:9494571" CDS complement(2326237..2327379) /locus_tag="Deba_2102" /EC_number="2.4.1.182" /note="COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: sat:SYN_01565 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Q2LVL8 Lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; manually curated; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase" /codon_start=1 /transl_table=11 /product="lipid-A-disaccharide synthase" /protein_id="YP_003808061.1" /db_xref="GI:302343532" /db_xref="GeneID:9494571" /translation="MRPPRIVMVAGEASGDIHGAALARALRQLAPEAEISGLGGPSMA AAGVDLLCAYDELAVVGVAEVLPKLGHILAVMAQLKGHLGRVRPDLVILIDFPDFNFR IGRAAKKLGLKVLYYISPQLWAWRRGRARQMARFVDALTCVFPFEEAFFRRIAPDLPV SFVGHPLLDRPPDPEADEPLPGGRDAQWVGLLPGSRMSEISRLAPLMMAAARIMAAQR PELRFVLPLAPGLDRRRVTPFWAGAPEGLLILDGQAERVMRQARALVVASGTATLQAA LAKAPMVVVYKTGKLSYHLGRALIKVDHIAMPNLIFGGGLLTELIQDQATPQAVAAET LAILGDAERRQAILEGLELVRGRLGQPGANQRVARLAMDLIEGNAH" misc_feature complement(2326243..2327373) /locus_tag="Deba_2102" /note="lipid-A-disaccharide synthase; Reviewed; Region: lpxB; PRK00025" /db_xref="CDD:178802" misc_feature complement(2326393..2327373) /locus_tag="Deba_2102" /note="ipid-A-disaccharide synthase; Provisional; Region: PRK14089" /db_xref="CDD:184498" gene complement(2327381..2328385) /locus_tag="Deba_2103" /db_xref="GeneID:9494572" CDS complement(2327381..2328385) /locus_tag="Deba_2103" /note="COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104:IPR016040; KEGG: aeh:Mlg_0316 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Q0ABW6 Oxidoreductase domain protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold" /codon_start=1 /transl_table=11 /product="oxidoreductase domain protein" /protein_id="YP_003808062.1" /db_xref="GI:302343533" /db_xref="GeneID:9494572" /translation="MKKVRLAVIGVGYLGRFHAQKIAAMDQAELVAVVDVDLDRAQAQ AAEHGCLACAALDEVIDQIDAACVVTPTVYHYDIAARLLTAGKDVLCEKPVTTTLAQA DHLVELAAAGGRILQVGHLERFNPAAAQAFGLMTKPMFIECNRIAPFKARAMDVDVAL DLMIHDLDIILALVGEEPCEIRAKGVPVLGPHADLVNARLEFPGGCVANVTASRLALK DERKMRIFQPESYMALDFKERQLLVVRGVNYVAGHDPEVDSRLLEFGPCDPLDQEIRS FVDSVIKRTPPLVDGAAARRALACALAVKAGVDAGLRGMEPLLNEPRKWVGAKAPGAC " misc_feature complement(2327516..2328385) /locus_tag="Deba_2103" /note="Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:31017" misc_feature complement(2328026..2328376) /locus_tag="Deba_2103" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(2328382..2329209) /locus_tag="Deba_2104" /db_xref="GeneID:9494573" CDS complement(2328382..2329209) /locus_tag="Deba_2104" /note="COGs: COG3494 conserved hypothetical protein; InterPro IPR010415; KEGG: dat:HRM2_22450 hypothetical protein; PFAM: protein of unknown function DUF1009; SPTR: C0QEK1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1009)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808063.1" /db_xref="GI:302343534" /db_xref="GeneID:9494573" /translation="MSRQAIGLIAGSNQFPILFAKAARAKGLRVVAVAHLGETVPELA AEVDEITWIHLGQLGKLLKAFRKAGVTRAVMCGGVTKTRIFSDVRPDLRALFLLRHLR HMADDGILRTVAQYMADQGVTIMASHELLPELLADGALHSRRGPSVDELDDARVGWTV AEQLGRLDIGQCVVVRGKAVVAVEAIEGTDACIARGGKLAGEKAVVVKRCKPTQDLRF DLPSVGRRTVEVMAESGCSCLVVESGKTLVFDREPMLSLADEKGICVMAWTEGDDKK" misc_feature complement(2328409..2329038) /locus_tag="Deba_2104" /note="Protein of unknown function (DUF1009); Region: DUF1009; cl09182" /db_xref="CDD:158447" gene complement(2329212..2329985) /locus_tag="Deba_2105" /db_xref="GeneID:9494574" CDS complement(2329212..2329985) /locus_tag="Deba_2105" /EC_number="2.3.1.129" /note="COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR011004:IPR010137; KEGG: dol:Dole_2840 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: A8ZY16 Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase" /codon_start=1 /transl_table=11 /product="acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase" /protein_id="YP_003808064.1" /db_xref="GI:302343535" /db_xref="GeneID:9494574" /translation="MTIHPTAIVDPSAKLGQGVEVGAYAFIGPHVEIGDGSKIQHHAS VDRLTRLGAGCMVAPFAALGGDPQDLKYHGEPTTLETGDNCLFREFVTVNRGTGEGGG VTRIGNNCLLMAYAHVAHDCQIGDNVVMANCATLGGHVTLEDRCNIGGLVAVHQFTRI GTFCFVGGASGVSKDLPPYTLCEGNRAISHGLNVIGLKRAGFADEAIETLKQAYRIIF RTRTPLADALAQVRAEVPQTAEVRRMLEFIESSKRGVSR" misc_feature complement(2329215..2329985) /locus_tag="Deba_2105" /note="UDP-N-acetylglucosamine acyltransferase; Provisional; Region: PRK05289" /db_xref="CDD:179994" misc_feature complement(2329221..2329979) /locus_tag="Deba_2105" /note="UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A...; Region: LbH_UDP-GlcNAc_AT; cd03351" /db_xref="CDD:100042" misc_feature complement(order(2329386..2329391,2329407..2329409, 2329482..2329484,2329518..2329523,2329569..2329571, 2329626..2329628,2329635..2329637,2329704..2329706, 2329773..2329775,2329782..2329784)) /locus_tag="Deba_2105" /note="active site" /db_xref="CDD:100042" gene complement(2330000..2330476) /locus_tag="Deba_2106" /db_xref="GeneID:9494575" CDS complement(2330000..2330476) /locus_tag="Deba_2106" /note="COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114:IPR010084; KEGG: aca:ACP_2637 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; SPTR: C1F2H7 beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ" /codon_start=1 /transl_table=11 /product="beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ" /protein_id="YP_003808065.1" /db_xref="GI:302343536" /db_xref="GeneID:9494575" /translation="MPEPCMDIQRIIELLPHRYPFLLIDRVLELEPRKRIVAIKNVTY NEPFFQGHFPGLPVMPGVLIVEAMGQAGGIMVYHEVPAGSDIIIYFMSLDNVKFRRPV VPGDQLLIEVNSTHLSSRAWKMAGKAYVDGKLAAQAELSAAVQISDKKGLTKGPEA" misc_feature complement(2330042..2330434) /locus_tag="Deba_2106" /note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288" /db_xref="CDD:48033" gene complement(2330480..2331520) /locus_tag="Deba_2107" /db_xref="GeneID:9494576" CDS complement(2330480..2331520) /locus_tag="Deba_2107" /note="COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterProIPR018357:IPR020573:IPR001451:IPR011004:IPR 007691; KEGG: gsu:GSU2266 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; SPTR: Q74AT5 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase" /codon_start=1 /transl_table=11 /product="UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase" /protein_id="YP_003808066.1" /db_xref="GI:302343537" /db_xref="GeneID:9494576" /translation="MELSLAQLAELVGGSLDGPADRVVSGINGIQEAGHDELTFLANP KYAPALAGCRAGVVLVRPDQDVPPGLAVIRVDDPYLAFAKILTVATQKPYQPMGVHPR AEVAPSAQLGLDVSVHALAYVGENARIGDRSVIHPGVYVGEGARVGDDTVIHPNVTIG HGCLVGNRCIIHSGTVIGADGYGFVPTADGHFKIPQVGVVQIDDDVEIGAGNTIDRAA LGRTWIQRGVKTDNMVHVAHNCVIGENTLLVAQVGVSGSTTVGKNVIMGGQTGVAGHL TIGDDVKIAAKSGVHGDLKPGEIVAGIPAIPHRMWLRNVAVGRRLADLFDRVKKLEKR LNALQAKDGVGS" misc_feature complement(2330507..2331520) /locus_tag="Deba_2107" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional; Region: lpxD; PRK00892" /db_xref="CDD:179158" misc_feature complement(2331260..2331463) /locus_tag="Deba_2107" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Region: LpxD; pfam04613" /db_xref="CDD:146990" misc_feature complement(2330585..2331199) /locus_tag="Deba_2107" /note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-...; Region: LbH_LpxD; cd03352" /db_xref="CDD:100043" misc_feature complement(order(2330591..2330593,2330603..2330605, 2330654..2330662,2330696..2330698,2330708..2330716, 2330732..2330734,2330762..2330770,2330780..2330782, 2330786..2330788,2330804..2330806,2330816..2330818, 2330822..2330830,2330834..2330836,2330861..2330869, 2330876..2330878,2330882..2330884,2330888..2330890, 2330900..2330902,2330936..2330944,2330975..2330977, 2330981..2330983,2330999..2331001,2331005..2331007, 2331041..2331043,2331047..2331049,2331053..2331055, 2331092..2331094,2331146..2331151,2331161..2331163)) /locus_tag="Deba_2107" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100043" misc_feature complement(order(2330663..2330665,2330696..2330701, 2330750..2330758,2330771..2330776,2330804..2330809, 2330816..2330818,2330828..2330830,2330969..2330977)) /locus_tag="Deba_2107" /note="active site" /db_xref="CDD:100043" misc_feature complement(order(2330696..2330701,2330750..2330755, 2330804..2330809,2330969..2330977)) /locus_tag="Deba_2107" /note="UDP-GlcNAc binding site [chemical binding]; other site" /db_xref="CDD:100043" misc_feature complement(order(2330663..2330665,2330756..2330758, 2330771..2330776,2330816..2330818,2330828..2330830)) /locus_tag="Deba_2107" /note="lipid binding site [chemical binding]; lipid-binding site" /db_xref="CDD:100043" gene complement(2331541..2332077) /locus_tag="Deba_2108" /db_xref="GeneID:9494577" CDS complement(2331541..2332077) /locus_tag="Deba_2108" /note="InterPro IPR005632; KEGG: drt:Dret_2230 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: C8X517 Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like)" /codon_start=1 /transl_table=11 /product="outer membrane chaperone Skp (OmpH)" /protein_id="YP_003808067.1" /db_xref="GI:302343538" /db_xref="GeneID:9494577" /translation="MTFVSRKITAVGLGLLMIMGVAAVPAVAKAEGKIVVVDMMQAMT ECKEGKRAQAELKRQAEKRQNEMKELGDEINKLRSYLLDAQDMMKSDVKIQKEYELKK KMKQFNDLRDDVRQELSAAERRLVEPLQRKMLELVQAIGVKENYDLMMDKRSGVVYVP ASRDITQEVISAYDAKYK" misc_feature complement(2331550..2332035) /locus_tag="Deba_2108" /note="Outer membrane protein [Cell envelope biogenesis, outer membrane]; Region: HlpA; COG2825" /db_xref="CDD:32653" misc_feature complement(2331556..2332029) /locus_tag="Deba_2108" /note="Outer membrane protein (OmpH-like); Region: OmpH; cl08146" /db_xref="CDD:195657" gene complement(2332113..2334773) /locus_tag="Deba_2109" /db_xref="GeneID:9494578" CDS complement(2332113..2334773) /locus_tag="Deba_2109" /note="COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR016474; KEGG: dal:Dalk_1787 outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: B8FFS9 Outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein" /codon_start=1 /transl_table=11 /product="outer membrane protein assembly complex, YaeT protein" /protein_id="YP_003808068.1" /db_xref="GI:302343539" /db_xref="GeneID:9494578" /translation="MFGGAVRKTCWLLLLLLALIAQPLAAAAAEQGRVAVFPFQIFSG DSINYLSMDLQKSLRDRLTKEGVSVIAADEVNQTLRSMNQPLDLALARKIADRLGAEY AVYGSLTKIGSRVSVDVKVLDVLGIRRPQTVFGEGVGLDSLDDMTAKLAREVAVLASG REQVAEVEVEGNKRIEAEAIRAAMKTKAGGPFSTIRLNDDIKDVWKLGYFDDVRVKTR DSERGKVVVVSVKEKPTIKEVTVAGAKAIDAQDIQDDIGVKTFSVYKPDAIKDAERKI LDMYHNKGYYDAKVTYQVSDLPSGDKAVKFDITEGEKVLISEIKFEGNNNFDADELQD QMSTQGSGWFTWLTDADVLEKNKLEQDTQHISDFYYNNGYMMAQVGAPQISRGEKGLI ITIKIVEGPRFKVGALNFSGDLLFSKDQLQEGMKTKTGEWYNRNNLREDLMRISGAYS NKGFAYVEVRPQIKEDLKKNTVDIDFTIVKGVKVFFENIVITGNDRTRDYVIRRELDS AEGDLFSGDTIKNANIRLRRLNFFEDVQVSTTKGSSQEQMNLNIKVKEKRTGQISVGA GYSTQDSFMVMGSIAENNLFGRGQRLELSGQIGGKSTRYTLSFTEPWLFDRPISAGFD LYDWEREYIDYDKEAIGGQLRFGFPTPIYATRVYTYYKYEEANITDISSSASAYVKDQ EGWHTTSSVRGLVRRDTRDQTFNATEGSDNSVSVEYAGGPLGGTNAFIKAIGDSGWYF PLFWETVFVAHGRIGWVEQQSGGDLPMYEKFYLGGINTLRGFEYMSVSPRDVQGERIG GERMLLFNLEYRFPLVPKAGLTGVVFFDTGNVWTKDDGYDVGDMRRSIGAGVRWLSPL GPLRLEYGYVLDPQPDEDTANWEFTIGSMF" misc_feature complement(<2334402..2334674) /locus_tag="Deba_2109" /note="Predicted integral membrane protein [Function unknown]; Region: COG5616" /db_xref="CDD:35175" misc_feature complement(2332116..2334287) /locus_tag="Deba_2109" /note="outer membrane protein assembly complex, YaeT protein; Region: OM_YaeT; TIGR03303" /db_xref="CDD:163210" misc_feature complement(2334075..2334284) /locus_tag="Deba_2109" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature complement(2333841..>2333990) /locus_tag="Deba_2109" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature complement(2333574..2333834) /locus_tag="Deba_2109" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature complement(2333331..2333567) /locus_tag="Deba_2109" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature complement(2333103..2333318) /locus_tag="Deba_2109" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature complement(2332116..2333024) /locus_tag="Deba_2109" /note="Surface antigen; Region: Bac_surface_Ag; cl03097" /db_xref="CDD:155280" gene complement(2334793..2335482) /locus_tag="Deba_2110" /db_xref="GeneID:9494579" CDS complement(2334793..2335482) /locus_tag="Deba_2110" /note="COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439:IPR015854; KEGG: gem:GM21_3422 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C6E5C2 ABC transporter; PFAM: ABC transporter" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_003808069.1" /db_xref="GI:302343540" /db_xref="GeneID:9494579" /translation="MTEGQALIHIRKLCKSYVLAGQKVEVLKGLDLSVHAGQMVAVLG ASGVGKSTLLHITGALDRPTSGQLLVAGRDLFKMDEPALAAFRNEHIGFVFQFHHLLP EFSALENVMMPALIARTPKAKAQEAAEDLLEAVGMGHRRQHRLAELSGGEQQRVAIAR ALVRQPRVLLADEPTGNLDERTGRLVFDLLQGLNDQRGLTTLVATHNERLAAVMDRRI RLADGLAHPVD" misc_feature complement(2334802..2335464) /locus_tag="Deba_2110" /note="lipoprotein releasing system, ATP-binding protein; Region: LolD_lipo_ex; TIGR02211" /db_xref="CDD:131266" misc_feature complement(2334814..2335461) /locus_tag="Deba_2110" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature complement(2335330..2335353) /locus_tag="Deba_2110" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature complement(order(2334865..2334867,2334964..2334969, 2335195..2335197,2335327..2335335,2335339..2335344)) /locus_tag="Deba_2110" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature complement(2335195..2335206) /locus_tag="Deba_2110" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature complement(2335012..2335041) /locus_tag="Deba_2110" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature complement(2334964..2334981) /locus_tag="Deba_2110" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature complement(2334946..2334957) /locus_tag="Deba_2110" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature complement(2334859..2334879) /locus_tag="Deba_2110" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene complement(2335533..2336756) /locus_tag="Deba_2111" /db_xref="GeneID:9494580" CDS complement(2335533..2336756) /locus_tag="Deba_2111" /note="COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838:IPR011925; KEGG: sfu:Sfum_3743 LolC/E family lipoprotein releasing system, transmembrane protein; PFAM: protein of unknown function DUF214; SPTR: A0LPR1 Lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family" /codon_start=1 /transl_table=11 /product="lipoprotein releasing system, transmembrane protein, LolC/E family" /protein_id="YP_003808070.1" /db_xref="GI:302343541" /db_xref="GeneID:9494580" /translation="MGFESFVALRYLRSRRKQAFISVITMLSMAGVALGVCALIVVLS VMGGFQREWQKKILGQSSHVLVHGLSGSIDDPEAVMAKVRQDPDVTAVAPFVYGQVML LAPGDAGGALLRGIDVASAAKVLDLQEIMISGSLSALDDGRTPPGIIVGAAMARSMGL HMGSVVSVVNPLGDDTPVGRLPRSEPFRVVGVFESGMYQYDSSVCYVSLAAGREFFGL GGAVSGLEVNIRDIYKAPEVAARLTEALGFEYYTRDWIRMNHTLFAALKLERVVMFII LTLIVLVAAFGIVSSLIMLVMDKTADIGVLKAMGASRKAVRRIFTMVGLTIGVAGTLI GVAGGLVLCAVLARYQFIELPKEIYALGTLPVEVDPLTVAIVAVSAMIISLLATIYPA AQAGALDPVEALRYE" misc_feature complement(2335536..2336750) /locus_tag="Deba_2111" /note="LolC/E family; Region: lolCE; TIGR02212" /db_xref="CDD:162764" misc_feature complement(2336019..2336507) /locus_tag="Deba_2111" /note="MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704" /db_xref="CDD:193180" misc_feature complement(2335557..2335937) /locus_tag="Deba_2111" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene complement(2336756..2338297) /locus_tag="Deba_2112" /db_xref="GeneID:9494581" CDS complement(2336756..2338297) /locus_tag="Deba_2112" /note="COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR018149:IPR004365:IPR004364:IPR016027:IPR 006195:IPR012340:IPR002313; KEGG: drt:Dret_2234 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: C8X521 Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial" /codon_start=1 /transl_table=11 /product="lysyl-tRNA synthetase" /protein_id="YP_003808071.1" /db_xref="GI:302343542" /db_xref="GeneID:9494581" /translation="MANTEQKNKPVAASAPEAILDENVLMRQRRKKAEDIQQMGYPLF PNTFRPRDTVGKLRAQYDHLDAARLESLEDVKFMIAGRIMAIRSFGKAAFVKLRDRSG QIQLHVQKDSLSPEEFELFRKLDVGDIIGVKGALFRTKTRELTLRVEMLRLVTKSYRS LPEKFHGLTDVEQRYRQRYLDLIMNDEVRGIFTARSKIVNTIRGHLTELGFMEVETPM MQVIPGGATARPFETYHNALGMKLYLRVAPELYLKRLVVGGLERVFELNRNFRNEGIS IRHNPEFTMLEFYMSYASYEDLMSITEQMLGACAMAVHGSLKFDYQGRQIDLTPPWEN LDFRSSLLEIGKAPPEVLFDIEKAMNMSAHLGGQHKTGDNIGKALAKIFDVTVEPHLW QPTFITGYPRDISPLSRTNDLDPDIVDRFEFFIAGREMGNGFSELNDPDDQRERFFAQ VAEREAGDDEAQFMDADYVRALEYGMPPTAGEGVGIDRLVMLLTDQPSIREVILFPLL RPEQG" misc_feature complement(2336762..2338237) /locus_tag="Deba_2112" /note="lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484" /db_xref="CDD:179044" misc_feature complement(2337752..2338063) /locus_tag="Deba_2112" /note="LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-...; Region: LysRS_N; cd04322" /db_xref="CDD:58592" misc_feature complement(order(2337818..2337826,2337833..2337835, 2337911..2337913,2337998..2338003,2338052..2338057)) /locus_tag="Deba_2112" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58592" misc_feature complement(order(2337863..2337865,2337881..2337883, 2337923..2337925,2337977..2337979,2337983..2337985, 2338016..2338018,2338034..2338039,2338043..2338045)) /locus_tag="Deba_2112" /note="putative anticodon binding site; other site" /db_xref="CDD:58592" misc_feature complement(2336768..2337745) /locus_tag="Deba_2112" /note="Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three...; Region: LysRS_core; cd00775" /db_xref="CDD:29820" misc_feature complement(2337635..2337649) /locus_tag="Deba_2112" /note="motif 1; other site" /db_xref="CDD:29820" misc_feature complement(order(2336834..2336836,2336990..2336992, 2337002..2337004,2337011..2337013,2337032..2337034, 2337449..2337451,2337461..2337463,2337479..2337481, 2337485..2337487,2337551..2337553)) /locus_tag="Deba_2112" /note="active site" /db_xref="CDD:29820" misc_feature complement(2337479..2337490) /locus_tag="Deba_2112" /note="motif 2; other site" /db_xref="CDD:29820" misc_feature complement(2336834..2336845) /locus_tag="Deba_2112" /note="motif 3; other site" /db_xref="CDD:29820" gene 2338604..2338882 /locus_tag="Deba_2113" /db_xref="GeneID:9494582" CDS 2338604..2338882 /locus_tag="Deba_2113" /note="KEGG: sfu:Sfum_0116 hypothetical protein; SPTR: Q2LR31 Hypothetical cytosolic protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808072.1" /db_xref="GI:302343543" /db_xref="GeneID:9494582" /translation="MLCTTTREGNECAFMSKNGCTFSGGTCNPAIEACLGCERLVTAG DMQYCSSYPDPAAKWRYGVCNFATHVKGTSKEEAKINPLKASRRAHRR" gene complement(2338988..2339863) /locus_tag="Deba_2114" /db_xref="GeneID:9494583" CDS complement(2338988..2339863) /locus_tag="Deba_2114" /EC_number="1.8.98.1" /note="COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: dal:Dalk_5067 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: B8FDV7 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain" /codon_start=1 /transl_table=11 /product="CoB--CoM heterodisulfide reductase" /protein_id="YP_003808073.1" /db_xref="GI:302343544" /db_xref="GeneID:9494583" /translation="MNYAFFVGCKTPHHVPAYEKSTRAVCAAVGLGLVDLEFNCCGYP MRNLYFDSYILSAARNMAIAEARGLDVMTQCKCCLGSFKTAAYYMKEDPALLARINDE LAKEGLRYSGKVVVKHLLTALSRDVGAEALAQRITRPFIGLKAAVLHGCHALRPSQMT GFDDPWHPTLSDELVALTGAEVVEWAGKVSCCGAPLRGRNDALADRMIGQRLNEAHRA GADVFCVSCPYSFMQASGAYRAAAGGGEALVAAAALYPQMLGLAMGLTPEELGVADGP ALGRHLVEHLANKAA" misc_feature complement(2339012..2339863) /locus_tag="Deba_2114" /note="Heterodisulfide reductase, subunit B [Energy production and conversion]; Region: HdrB; COG2048" /db_xref="CDD:32231" misc_feature complement(2339165..2339338) /locus_tag="Deba_2114" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene complement(2339867..2341540) /locus_tag="Deba_2115" /db_xref="GeneID:9494584" CDS complement(2339867..2341540) /locus_tag="Deba_2115" /note="COGs: COG1150 Heterodisulfide reductase subunit C; InterProIPR009051:IPR012285:IPR017896:IPR017900:IPR 006655; KEGG: dal:Dalk_5066 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV6 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Nitrate reductase subunit gamma" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_003808074.1" /db_xref="GI:302343545" /db_xref="GeneID:9494584" /translation="MFFDYGLHVSLALCAAGLAYKVWGWLSAKVGPEGAEFSPAARAL WALRGVVGLLLGARAFKFVWALIVDGLLQRRVLRASAYRWVMHMCIFVGFVLLTLLHA MGPIVSNALFGDYQATLNPFLFLRNLFGLMVLLGVGMAIWRRLRAPGVRATNRGVDVL AIVVVALIIFSGFALEALKIDSPREFERMVAEYADPEAADEVAALRLFWSRDYGVVFA KDQTPAFSPELYDQGRQLSEDSCLSCHDKPAWAFASFGLARLIRPAAVALAESGAAEG LWFIHVLACFVGLALLPHTKFMHLISSPLIIAINAANERAAMHPANRATVRAMELDAC THCAACSVRCSVAAAMAQVANPAILPSEKLHALARMAHGKGLDQHDLRRIRQGADICT DCHRCTDLCPVRINLQDLWQAQKQDLERAGQGETFKALRDRAVSAAQPSRQQKVVRLG QRQFGAGLDLSGRAQSFAGCFRCKTCTTVCPVVQECADVKAEIDLAPHQIMHALGLGL REEALGARMIWNCLSCYRCQEACPQGVRVTDIMFELTNLAGRDGRVKEA" misc_feature complement(2340161..>2340400) /locus_tag="Deba_2115" /note="Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]; Region: COG1139" /db_xref="CDD:31334" misc_feature complement(<2339873..2340157) /locus_tag="Deba_2115" /note="Heterodisulfide reductase, subunit C [Energy production and conversion]; Region: HdrC; COG1150" /db_xref="CDD:31344" gene 2341857..2342786 /locus_tag="Deba_2116" /db_xref="GeneID:9494585" CDS 2341857..2342786 /locus_tag="Deba_2116" /note="COGs: COG2006 conserved hypothetical protein; InterPro IPR007160:IPR006311; KEGG: dvm:DvMF_2714 protein of unknown function DUF362; PFAM: protein of unknown function DUF362; SPTR: B8DIZ2 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808075.1" /db_xref="GI:302343546" /db_xref="GeneID:9494585" /translation="MDRRDFLKWQMKGALWLAAGASGLNAIGGASQALAAAEPDISVV RGAPGAATRAAVDLLGGMKRFVKPGQKVVIKPNMSFDTPAEAGSNTHPLVLRELMLMC QEAGASRVLILDNPLRGAEACLQGSGIPEPCNAVMANSVQMVQNESMFSSVEIRGAAQ MASTQVMKAVLESDVLIAAPAAKSHGATGVSLAVKGQMGLILEREIMHSRYNLDTSIV DLASLLKADLTVVDAIYVLSTGGPYGPGKVLKEDTIIASADMVAADAQTVSMFEWYGR RFQPRQVPHIKLAHERGLGRMDVENMTVKTVRL" misc_feature 2341968..2342744 /locus_tag="Deba_2116" /note="Uncharacterized conserved protein [Function unknown]; Region: COG2006" /db_xref="CDD:32189" misc_feature 2342067..2342669 /locus_tag="Deba_2116" /note="Domain of unknown function (DUF362); Region: DUF362; pfam04015" /db_xref="CDD:190830" gene 2342788..2344395 /locus_tag="Deba_2117" /db_xref="GeneID:9494586" CDS 2342788..2344395 /locus_tag="Deba_2117" /note="COGs: COG0348 polyferredoxin; InterPro IPR017896:IPR017900:IPR001450; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C0GLH2 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: MauM/NapG family ferredoxin-type protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_003808076.1" /db_xref="GI:302343547" /db_xref="GeneID:9494586" /translation="MVVRRVVQLTSLGLFLTLLSLAAAASAPDWAVDLFQRMDPSLAA LTMLASQKWIWALWPAAVVLASGLLFGRAFCGYVCPMGTTIDGADKIIGRGKTKPAQW LRGMGWLVLAFLGGAALAGVSLVFLAAPLSLITRLYGLVALPAAELLGGAAVDIVRPV ADDLGLNWLAFWQINAPRFDTVWFVAGVFAAIFALARLAPRFWCRYLCPSGAMLALFA AKPLIRRRVSDQCTGCGKCRRACPMGAIEQNPLLTNHRDCLLCRTCASVCPENAISFL PGPIALPTKAPAFSPIRRQLLLSGVGGASTAVLAYGGLQLPRAASDKTALPTPMLLRP PGALPEHDLLKLCVRCGLCMSACPTNTLQPIWFEAGLTAAFSPTITPRLAPCDPRCTA CGQSCPTGAIRPLTLGERVWAKTGTAVVDRQRCLAWNQHKKCVVCDEVCPYDAISLVQ QPGIPVSVPLVDADKCGGCGFCEKFCPVRNKAAIVVNPLGELRLDHGSYAQNGVMRGL NLHLVPPGGQSHGHVSPTNGPAPGFTD" misc_feature 2342944..2343084 /locus_tag="Deba_2117" /note="4Fe-4S binding domain; Region: Fer4_5; pfam12801" /db_xref="CDD:193277" misc_feature <2342953..2343612 /locus_tag="Deba_2117" /note="ferredoxin-type protein, NapH/MauN family; Region: napH_; TIGR02163" /db_xref="CDD:162737" misc_feature <2343472..>2343600 /locus_tag="Deba_2117" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature 2343637..>2344131 /locus_tag="Deba_2117" /note="quinol dehydrogenase periplasmic component; Provisional; Region: napG; PRK09476" /db_xref="CDD:181890" gene 2344512..2345024 /locus_tag="Deba_2118" /db_xref="GeneID:9494587" CDS 2344512..2345024 /locus_tag="Deba_2118" /note="KEGG: GI18852 gene product from transcript GI18852-RA ; K13174 THO complex subunit 5; SPTR: D0GTE2 ATP-dependent helicase HrpB" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808077.1" /db_xref="GI:302343548" /db_xref="GeneID:9494587" /translation="MKKYRAVAILLALTVALAAWPALAENNAKLKSEIQDMLDQVAVE MVKKDLAAVAAHSMPQAVFHFRDGKSLTLAQWQESRAKALADMQNISSKFVVEKAWPE GADKAGVTYQENHQFTTISDPGAKQAIEARFSAVLCKTDAGWRFLEFKELDLRVTRDG KLVEPPAEKK" gene complement(2345740..2347329) /locus_tag="Deba_2119" /db_xref="GeneID:9494588" CDS complement(2345740..2347329) /locus_tag="Deba_2119" /note="COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterPro IPR009010:IPR006656:IPR006657; KEGG: sfu:Sfum_0031 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; SPTR: A0LE82 Molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain" /codon_start=1 /transl_table=11 /product="molybdopterin oxidoreductase" /protein_id="YP_003808078.1" /db_xref="GI:302343549" /db_xref="GeneID:9494588" /translation="MTNNFADFAKAKMFLVIGSNMTEAHPVASTFLKNAVQKGAGLIV ADPRRTALAAMADEHMQLKVGSDIALLNGLMHVLITEEIYDRRYVESCTVEFDKLKAT VMEYPPERAAELSGVPAETIVRVARKLAATKPAMLIYTLGITEHTCGVNNVLSTANLQ MLLGNVGFECGGVNPLRGQNNVQGACDMGALPNVYPGYQKVIDPAAKAKFEKFWGVEH LDDKNGLMMPAMFEGLVTGKVRGMWIFGENVANTEPDIHHVEHQLASAEFLVCSDIFP TETTRFAHVILPSAAWSEDDGTFASSERRVNRVRKVSTPPGQAKPNWWIFKEVAARMG QMWSSSSAQEIWDNEFSVVAPAFTGIKYSRIEGDGLQWPCTSLEHPGTQVMHKDGCFT CGLGNFKPVEWTPPAEVTDAEYPYVLSTGRRLYHYHTRTQTGRCGGLNDLLGEETADI SPADAAKMGVRSGDKLRLASRRGEVVVSARVTAEVPPGMVWMAFHFREGCANWLTNPA FDPVSQTAEYKACAIKMAPAA" misc_feature complement(2346115..>2347329) /locus_tag="Deba_2119" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature complement(order(2346445..2346447,2346460..2346465, 2346499..2346501,2346508..2346516,2346586..2346594, 2346910..2346912,2347129..2347131,2347189..2347197, 2347258..2347263,2347270..2347272,2347276..2347281)) /locus_tag="Deba_2119" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:73198" misc_feature complement(2345749..2346096) /locus_tag="Deba_2119" /note="Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H)...; Region: MopB_CT_Formate-Dh_H; cd02790" /db_xref="CDD:30322" misc_feature complement(order(2345773..2345778,2345824..2345826, 2345848..2345850,2346043..2346054,2346058..2346072)) /locus_tag="Deba_2119" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:30322" gene complement(2347378..2348436) /locus_tag="Deba_2120" /db_xref="GeneID:9494589" CDS complement(2347378..2348436) /locus_tag="Deba_2120" /EC_number="1.6.99.5" /note="COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR001041:IPR017896:IPR017900:IPR006655:IPR 000283:IPR019574:IPR001450:IPR006963:IPR006656; KEGG: dat:HRM2_16870 FdhA5; PFAM: molybdopterin oxidoreductase Fe4S4 region; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: C0QAZ5 FdhA5; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; 4Fe-4S binding domain; Molybdopterin oxidoreductase Fe4S4 domain" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase (quinone)" /protein_id="YP_003808079.1" /db_xref="GI:302343550" /db_xref="GeneID:9494589" /translation="MPNPQLTINSRSVSFAPGQTILEVARENGIDIPTLCYLKDCTPT GACRMCMVEVKGARSLLAACATPAAEGMDIQTESPKVIGSRKLNLELLLASGEHNCIV CEANGACQLQALAYKYGVETVRFEGRTTNYPIEDNNPLIVRDFSKCILCGRCVQACNE VQVNKAIGYGYRGAKSKIVTSGDRPYNQSDCVFCGQCVQVCPTGALTEKKAKGMGRAW EMQKVRTTCPYCGVGCQIWLHVKDGRIVKTSAVEDAEPNKGRLCVKGRFGYDFIYSED RLTTPLIREGEGFREASWDEALDLVASKFKQIIAESGPDALAGVSCARSINEDSYNMQ KLFRAVIGTNNIDHCART" misc_feature complement(2347750..2348436) /locus_tag="Deba_2120" /note="bidirectional hydrogenase complex protein HoxU; Validated; Region: PRK07569" /db_xref="CDD:181037" misc_feature complement(2348212..2348406) /locus_tag="Deba_2120" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature complement(order(2348245..2348250,2348287..2348298, 2348302..2348304,2348329..2348331,2348338..2348343)) /locus_tag="Deba_2120" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature complement(order(2348245..2348247,2348287..2348289, 2348296..2348298,2348329..2348331)) /locus_tag="Deba_2120" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature complement(2348062..2348184) /locus_tag="Deba_2120" /note="NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588" /db_xref="CDD:192636" misc_feature complement(2347816..2347881) /locus_tag="Deba_2120" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature complement(<2347384..2347767) /locus_tag="Deba_2120" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" gene 2348696..2350396 /locus_tag="Deba_2121" /db_xref="GeneID:9494590" CDS 2348696..2350396 /locus_tag="Deba_2121" /note="COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: mem:Memar_2456 beta-lactamase domain-containing protein; SPTR: A3CYC7 beta-lactamase domain protein; manually curated; PFAM: Metallo-beta-lactamase superfamily" /codon_start=1 /transl_table=11 /product="Zn-dependent hydrolase including glyoxylase" /protein_id="YP_003808080.1" /db_xref="GI:302343551" /db_xref="GeneID:9494590" /translation="MIWVNNQWQPTPRPTETEIFPMIRRVDSTCSNAFIVRASSCVLV VDPGADEEQASAIEALVEEIMAQGPRPVLVVLTHCHRDHSLAVRDWPARHPSWLLAAQ ESGAKAMRGGDHRVTMAYMFNEDYPPVDVHVELLSAIDAATVGERALAPCPGGELVLR TDIAGFAGGPPAPRQSLVAGEKTVAELFHAPGHSPDSLVINVGGALLVGDLFCAAAPM VAGIVGWDGDQLKRSLAMVERLLGDGSVHVCCGGHGQPMTSSQALDVLGQVRAETEKL SGAAILDERRVAFLKRYAVAVLHELDQLFTIMAGRLFTLSYFLEQLEEEELAAGILQS LDIDAIDNLITSFHRAERDSQGDILELRTPMRGLVTLKRINNILRQARIDDYIDPLIR RRLRSLLLDYIDATRGLPFQTTMLERDLNQFAQEFVEEMARVCQQSEAVLASADDDKA FSTALARQIAANNALPPVRLNFVPHPSRVLTRIDHDRCSDLLVDFIERFHSAGAHTVD MDVAILDGGQPCLTLRPSPPLGLASAGKQKKAFWELSARIAHCQLIFEPEAVGIAPLA " misc_feature 2348735..2349580 /locus_tag="Deba_2121" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(2350468..2352456) /locus_tag="Deba_2122" /db_xref="GeneID:9494591" CDS complement(2350468..2352456) /locus_tag="Deba_2122" /EC_number="6.2.1.1" /note="COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR020845:IPR000873:IPR011904; KEGG: sfu:Sfum_0745 acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A0LG91 Acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase" /codon_start=1 /transl_table=11 /product="acetate/CoA ligase" /protein_id="YP_003808081.1" /db_xref="GI:302343552" /db_xref="GeneID:9494591" /translation="MSSKVTENNGMYYPPQEIVGRAWIADMAQYQSMYQKSISDPEGF WGEVAKDFHWQTPWTKVCQYNYQRSKGPIDIKWFLGAKTNISYNCLDRNLADKADQPA LMWEGNEPGEDKTLTYGQLYEEVTKFANILKGFGVKKGDRVTIYLPMVLELAISMLAC ARIGAIHSVVFGGFSAESLKDRIVDSSCCLLITSDGTYRGGKAVTLKQIADDALDGAT REGLTVPKVVVVQRVGEGKGIDCPMVAGRDMWWHDLMASAPVGCDPVWLDSEDPLFIL YTSGSTGKPKGVLHTTGGYMVYTAMTHRYVFDYHDGDIYWCTADIGWVTGHSYILYGP LLNGARSLMFEGVPTYPDSGRFWEVVDKWGVNIFYTAPTAIRAIMRMGDDFVKKHSRK SLRLLGTVGEPINPEAWRWYNEVVGEGRCPIVDTWWQTETGGILITPLPGCTPTKPGS ATLPFFGVQPALMDDEGKEISGNGVSGRLVIKAPWPAQLRTTYGNHERFEQVYFSDFD GYYFTGDGARRDEDGYYWITGRVDDVINVSGHRMGTAEVESALVSHPAVAEAAVVGFP HEIKGQGIYTFVTLKVGQEYSDELKAELVRHVRKEIGPIATPDVIHWAPALPKTRSGK IMRRILRKMAAGDMSDFGDTSTLADPTVIGTLIEMNGR" misc_feature complement(2350483..2352423) /locus_tag="Deba_2122" /note="acetyl-CoA synthetase; Provisional; Region: PRK00174" /db_xref="CDD:178915" misc_feature complement(2352130..2352384) /locus_tag="Deba_2122" /note="Domain of unknown function (DUF3448); Region: DUF3448; pfam11930" /db_xref="CDD:192884" misc_feature complement(2350555..2352018) /locus_tag="Deba_2122" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(2352544..2353821) /locus_tag="Deba_2123" /db_xref="GeneID:9494592" CDS complement(2352544..2353821) /locus_tag="Deba_2123" /note="InterPro IPR016196:IPR011701; KEGG: gsu:GSU2490 oxalate/formate antiporter, PFAM: major facilitator superfamily MFS_1; SPTR: Q74AA0 Oxalate/formate antiporter, PFAM: Major Facilitator Superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_003808082.1" /db_xref="GI:302343553" /db_xref="GeneID:9494592" /translation="MSQIKNKGWQVAMAGLGINLALGILYTWSVFKLAIKDSIERGDG MFNWDMASLNDPYAVCCIVFAFAMIPAGRMQDKLSPRVTATIGGVLTGLGLLLASFST SLLVWVLGFGVLMGAGLGFGYASATPPAIKWFPASKTGMIAGIVVAGFGLASVYIAPL AKYLIGQFGLSQSMMIFGGAFIVVVSALAQLLVNPPAGYKPPQPQTAATQNKSAPSNH VMIDVEPKVMLRTRAFWVLWFIYAVGSGAGLMIIGSVAGMASASLGEMAWLVVALMAV GNAGGRIAAGMLSDKLGRLQTMAAMLSFQGLIMFGLLYTGTESVALIVTAATLIGFNY GTNLSLFPSATKDFFGIKNFGANYGLLFTAWGVGGLILPRVSQMIVADTGSLNSAYVL AGVLLLAGAGMTLFVGKPAGATGKDVLAAPAGS" misc_feature complement(2352703..2353686) /locus_tag="Deba_2123" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature complement(2352670..>2353503) /locus_tag="Deba_2123" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(2352715..2352717,2352724..2352729, 2352736..2352741,2352748..2352753,2352784..2352786, 2352793..2352798,2352808..2352810,2352817..2352822, 2352829..2352831,2352976..2352978,2352988..2352990, 2352997..2352999,2353009..2353011,2353021..2353023, 2353063..2353065,2353072..2353077,2353084..2353089, 2353096..2353098,2353360..2353362,2353378..2353383, 2353390..2353395,2353429..2353431,2353438..2353443, 2353450..2353455,2353462..2353467)) /locus_tag="Deba_2123" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(2354055..2355425) /locus_tag="Deba_2124" /db_xref="GeneID:9494593" CDS complement(2354055..2355425) /locus_tag="Deba_2124" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR011006:IPR009057:IPR002078:IPR001789:IPR 003593:IPR002197; KEGG: dat:HRM2_01260 sigma-54 dependent DNA-binding response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: C0QED2 Sigma-54 dependent DNA-binding response regulator; PFAM: Response regulator receiver domain; Sigma-54 interaction domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003808083.1" /db_xref="GI:302343554" /db_xref="GeneID:9494593" /translation="MISFCIYVVDDEEFIRDAVELNLGRYAVFGFASAEAAMAPGPTP PPDLVLLDVGLPGLSGVEALAPMRRLWPRALFIMITAYEDVDTVVTAMKGGAYDYVVK PLHMDSLKNNIENALETLRLRKEVSLLHQRYLEENLPLFIGRSRAIQAVMDFVGKIAA SPDAPVLICGPTGTGKELIAGAIHYKSPNFRGRLVTVNCAAIPAELIESELFGYEPGA FSGARAGGKRGLIEEADGGTLFLDEVGDLSLEAQAKLLRFLDGGEFIKVGSARPTKVR ARVVSATNRDLAAMIDQGQFRRDLYYRLAVTRVDVPSLMERPEDIEPIARHFLVAMAD KYGKRFLSISPEAMAYLRGRPWEGNVRELKAVIERAVIAGDGPELTMESLRAEPPAAP AAAGQALPPLTPAGLDLPALLEGLERDYLQQAEALGGGSDVRAAELLGLNYHTFRYRK KKLLGD" misc_feature complement(2354067..2355425) /locus_tag="Deba_2124" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature complement(2355075..2355404) /locus_tag="Deba_2124" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2355117..2355122,2355129..2355131, 2355186..2355188,2355246..2355248,2355270..2355272, 2355393..2355398)) /locus_tag="Deba_2124" /note="active site" /db_xref="CDD:29071" misc_feature complement(2355270..2355272) /locus_tag="Deba_2124" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2355246..2355254,2355258..2355263)) /locus_tag="Deba_2124" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2355114..2355122) /locus_tag="Deba_2124" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2354487..2355002) /locus_tag="Deba_2124" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2354895..2354918) /locus_tag="Deba_2124" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2354574..2354576,2354700..2354702, 2354892..2354915)) /locus_tag="Deba_2124" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2354697..2354714) /locus_tag="Deba_2124" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2354517..2354519) /locus_tag="Deba_2124" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(2355439..2357640) /locus_tag="Deba_2125" /db_xref="GeneID:9494594" CDS complement(2355439..2357640) /locus_tag="Deba_2125" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003594:IPR009082:IPR004358:IPR005467:IPR 000014:IPR000700:IPR003661:IPR013163:IPR013656:IPR013767; KEGG: dat:HRM2_07890 two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein); PFAM: Cache type 2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: C0QJP9 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Cache domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor signal transduction histidine kinase" /protein_id="YP_003808084.1" /db_xref="GI:302343555" /db_xref="GeneID:9494594" /translation="MDKSGRERRMHRKLWAMTAMRLILPSLLTVCVFLAAIFLVVLPE LRANIMDRKREMLRELVQTAMDGLAFLEARRQKGELTMAQARELAVRQLRQQRYGREM KDYFWINDMHPIMVMHPYRSDLEGKDISDFADPNGKRLFVEFVQTAKAHGEGFVDYMW QWKDDPKKIAPKLSFIKEFTPWGWIVGTGVYIDDVDRQIAAIVRHFTQTALGTLGIIA VLLLYVAQYNFRTERSRMRAENSLRQSREMLRLVMDNIPQYIYWRDKDGVFQGCNKGF RQLAGLAEDDAIQGLRQVDAPGVLEDGDGQFGLERAVMESGRAELHVVEPRRGPGGAE MWLESNRVPLRDETGEIFGVLCTHEDITPRIETGRKLAESERRFRSLVEHSPAGILIL KDGRVVYSNPEQKRLFGVERDDFYFDDLMSAPPGDLRMLYHLDNEPGLGEGRTWEHEL RFYPLGKVYNSMELRWVLCRATRISHKGGPAYLIIMLDISRAKELEHMVKIQDKMASL GRVAAGIAHEIRNPLSGINLYLSALQGSNAAADPATAAIIEKMRSVSGRIEAVVKRVL DFSRPTTPMLGWMQVNRALENVLELTAVSLRKAGVSVDLRLEKGLPLIYADQQLLEQV FVNLVTNAMQAMKDWDGPRRLRINSAVQGHRVTVRVADSGPGVPPEHQDRIFDPFFST GGHGSGIGLSLCARIVGDLGGALEYNRGAMGGAEFVVSLPAVIYWGYDSHG" misc_feature complement(2357215..2357505) /locus_tag="Deba_2125" /note="Cache domain; Region: Cache_2; pfam08269" /db_xref="CDD:149365" misc_feature complement(2356528..2356908) /locus_tag="Deba_2125" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(2355475..>2356614) /locus_tag="Deba_2125" /note="sensory histidine kinase AtoS; Provisional; Region: PRK11360" /db_xref="CDD:183098" misc_feature complement(2355931..2356128) /locus_tag="Deba_2125" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2355946..2355948,2355958..2355960, 2355967..2355969,2355979..2355981,2355988..2355990, 2356000..2356002,2356054..2356056,2356063..2356065, 2356075..2356077,2356084..2356086,2356096..2356098, 2356108..2356110)) /locus_tag="Deba_2125" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2356090..2356092) /locus_tag="Deba_2125" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2355478..2355780) /locus_tag="Deba_2125" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2355490..2355492,2355496..2355501, 2355514..2355516,2355520..2355522,2355568..2355579, 2355640..2355645,2355649..2355651,2355655..2355657, 2355661..2355663,2355739..2355741,2355748..2355750, 2355760..2355762)) /locus_tag="Deba_2125" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2355748..2355750) /locus_tag="Deba_2125" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2355571..2355573,2355577..2355579, 2355643..2355645,2355649..2355651)) /locus_tag="Deba_2125" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 2357763..2358134 /locus_tag="Deba_2126" /db_xref="GeneID:9494595" CDS 2357763..2358134 /locus_tag="Deba_2126" /note="InterPro IPR003615:IPR002711; KEGG: psa:PST_1581 restriction endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Q1NP98 HNH endonuclease; PFAM: HNH endonuclease" /codon_start=1 /transl_table=11 /product="HNH endonuclease" /protein_id="YP_003808085.1" /db_xref="GI:302343556" /db_xref="GeneID:9494595" /translation="MADKSKQAGGSIIEQARRHMQERENTYREMALKMYPWVCGRCGR EFSGKRLRELTVHHKDHNHDNNPPDGSNWELLCVYCHDEEHSRYTTAQLTAQAPPASR GGQSLGPMGTLGDLLKAKLGQ" misc_feature 2357805..>2358026 /locus_tag="Deba_2126" /note="HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins...; Region: HNHc; cl00083" /db_xref="CDD:193649" gene complement(2358154..2359071) /locus_tag="Deba_2127" /db_xref="GeneID:9494596" CDS complement(2358154..2359071) /locus_tag="Deba_2127" /note="COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: pvi:Cvib_0884 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: A4SEJ0 Alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_003808086.1" /db_xref="GI:302343557" /db_xref="GeneID:9494596" /translation="MSEKIELLPGVSIQPRIVQTAKGPVECDLSAGDGPVALVCHGGI GGVDQARVIAAWLDPRRYRILSVSRPGYLGTPLDSGRGFEDQADLFAALLDALDLDKA AVIAASAGGPPAYAMAIRHPERVWALVAIDCVSGYYDMPETAGAIAQAIFTTDLGQKL LKKIGEARPDLFLKQIFQSEAYFTKSQLKAHLDYAMGSDEAKDFVRAFMNTMNPYATR KPGTDNDMVLMRQLTHLPVERIACPTLIVHGTHDADVKFYDGVYAHEHIVGSERFWIE EGSHLGFWLSPNAPLAQRAARDFLDRHRP" misc_feature complement(2358205..2358960) /locus_tag="Deba_2127" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene complement(2359180..2359638) /locus_tag="Deba_2128" /db_xref="GeneID:9494597" CDS complement(2359180..2359638) /locus_tag="Deba_2128" /note="KEGG: gur:Gura_3066 cache type 2 domain-containing protein; SPTR: A5G619 Cache, type 2 domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808087.1" /db_xref="GI:302343558" /db_xref="GeneID:9494597" /translation="MLKKMLMLGSLAMLTVFVCLGAAQAADEKEAKAQAIAEKAAALI EAKGMAAIDELRKSDVGDNLFVCEESGQELVNTASPDLQGKNISDRKMPSGASVVSEQ LALVKAKGAGWIDAPWAVSNDATPRQTRSYVKGVTLDGKTLLVGSWFYLD" gene 2359760..2360077 /locus_tag="Deba_2129" /db_xref="GeneID:9494598" CDS 2359760..2360077 /locus_tag="Deba_2129" /note="InterPro IPR000361; KEGG: dal:Dalk_4032 hypothetical protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: B8FLY4 Putative uncharacterized protein; PFAM: Iron-sulphur cluster biosynthesis" /codon_start=1 /transl_table=11 /product="HesB/YadR/YfhF-family protein" /protein_id="YP_003808088.1" /db_xref="GI:302343559" /db_xref="GeneID:9494598" /translation="MVELTPRAAAALRQILGQRGWSQAVRVVIASSGCCDAALGLRLE PATPDDVLCQSHGLNLALARRAADLAGLVRVDLADDGEGFVITSAKPLGEWDGFGVCQ VLG" misc_feature 2359763..2360020 /locus_tag="Deba_2129" /note="Iron-sulphur cluster biosynthesis; Region: Fe-S_biosyn; cl00400" /db_xref="CDD:189093" gene 2360232..2361092 /locus_tag="Deba_2130" /db_xref="GeneID:9494599" CDS 2360232..2361092 /locus_tag="Deba_2130" /note="COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: ote:Oter_3365 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: C0AB92 Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase" /codon_start=1 /transl_table=11 /product="prolipoprotein diacylglyceryl transferase" /protein_id="YP_003808089.1" /db_xref="GI:302343560" /db_xref="GeneID:9494599" /translation="MQQNLSHWVHDIDPVLIQIYGDFGVRYYGLAYILAFVGGYLFLR LAWRKGRSPLDPEKIDNVFLAIAGGVIIGGRLGHVLFYELGHFLGDPLMVFRLWDGGM SSHGGFIGVALALIWAARRYGLSFAELGDLICPIVPLGLMMGRVANFINGELWGTPSQ APWAVVFPRSAPPGVALEQVAARHPSQLYEAALEGLLLLLIFQWRFWFTKANKFQGRL SGEFLILYAIVRIFCEQFREPDAGLILGMSRGSFYSLFLLAWGAVLWFRSGPRVEKAP PGSKKQKNRV" misc_feature 2360262..2361062 /locus_tag="Deba_2130" /note="Prolipoprotein diacylglyceryl transferase; Region: LGT; cl00478" /db_xref="CDD:193836" gene 2361406..2361831 /locus_tag="Deba_2131" /db_xref="GeneID:9494600" CDS 2361406..2361831 /locus_tag="Deba_2131" /note="COGs: COG1908 Coenzyme F420-reducing hydrogenase subunit delta; InterPro IPR003813; KEGG: sfu:Sfum_2154 methyl-viologen-reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; SPTR: A0LK84 methyl-viologen-reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta" /codon_start=1 /transl_table=11 /product="methyl-viologen-reducing hydrogenase subunit delta" /protein_id="YP_003808090.1" /db_xref="GI:302343561" /db_xref="GeneID:9494600" /translation="MTEVFEPKILAICCQWCSYAAADLAGAMRLQYPPNVRIIMVPCT GRVDALHMLRPFEEGADGVLLSGCLPGDCHYKDGNLKAAKRVDYVKGMLASLGVEPER LEMYHNSSAMGPQFAQTCRDFTERIIGLGPIYGAGQKAA" misc_feature 2361427..2361798 /locus_tag="Deba_2131" /note="Methyl-viologen-reducing hydrogenase, delta subunit; Region: FlpD; cl00831" /db_xref="CDD:120156" gene 2361929..2364967 /locus_tag="Deba_2132" /db_xref="GeneID:9494601" CDS 2361929..2364967 /locus_tag="Deba_2132" /note="COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR016040:IPR017896:IPR017900:IPR001450:IPR 006076; KEGG: dal:Dalk_0247 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: FAD dependent oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FMT9 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain; FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_003808091.1" /db_xref="GI:302343562" /db_xref="GeneID:9494601" /translation="MADKTKKPVGAVMVVGGGIASIQASLDLADSGYYVYMVEKTSAI GGVMAMLDKTFPTNDCSMCILSPKLVEAGRHPNIEVITLAEVQDISGEAGNFEVKVLQ KARYIDMSKCIACGACAAKCPKRVPDEFNQRLNNRHAAHVRYPQAVPLKYAIDKENCL YFQKGKCRACEKFCPADAVDFGQQDVMHTLNVGSVILAAGYRPVDPGQCGIHTSAFQN FPNVVTALQFERILSASGPWMGHLVRPGDNKEPKKIAWLQCVGSRDINTCQNGYCSAV CCMYAIKEAIIAKEHSHHGLDTSIFFMDMRTFGKDFERTYEGAKQKGIRFIRSRNPSM IELPDGSLELSWVDEKGKLSTEVYDLVVLSQGLEMDPETAALCRKIGVETGQSRFVET GSFTPVESSRPGIYVCGALAGPKDIPLSVMEASAAACAAAANIHSARGTMITEQVKRP QKNVGGDPPRVGVFVCSCGINIAGVVDVDAVKQYAATLPNVEYVENNLFTCSQDTQDK MAKVIEEKGLNRMVVAACSPRTHEPLFQETLQAAGVNKYLFELANIRNQDSWVHANDP VAATEKAKDQVRMAVAKASLLEPLTEARLSILPKAMVIGGGIAGMNAALELAKQGFET HLVERDIKLGGNARMLRVTAKGDLVQPYLEQLAAKVQAEPLIHLHLGSTLKDVDGFVG NFKTTLVSDKGEEVVEHGATLLCIGAGEYKPTEYLYGQHPGVMTHLELDSALINGQID PKKTNSVVFIQCVGSREPERPYCSKVCCTHSVESALHFKESNPDCQVTVMYRDMRTFG EREYLYQKARALGVMFVRFDLDRKPVVELDGDQLQVRAYDPILDMDVAFPADVVGLAT AIVSHRQEELAQMFKLPMDSDGWLLEAHVKLRPVDFATDGVFMAGIAHYPKPIEEAIS QAQAAVSRAITVLSRKEMFLPGTVAVIDKKKCVGCGVCWEICPYSAITQDSADGLAVV NEALCKGCGTCVASCRSGAPNLKGFSNQDVMSQITTMLQG" misc_feature <2361983..2363197 /locus_tag="Deba_2132" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature 2363303..>2364154 /locus_tag="Deba_2132" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature 2363735..>2363833 /locus_tag="Deba_2132" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature <2363996..2364958 /locus_tag="Deba_2132" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature 2364743..2364814 /locus_tag="Deba_2132" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene 2365002..2365457 /locus_tag="Deba_2133" /db_xref="GeneID:9494602" CDS 2365002..2365457 /locus_tag="Deba_2133" /note="COGs: COG1908 Coenzyme F420-reducing hydrogenase subunit delta; InterPro IPR003813; KEGG: dal:Dalk_3063 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; SPTR: B8FBK0 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta" /codon_start=1 /transl_table=11 /product="methyl-viologen-reducing hydrogenase subunit delta" /protein_id="YP_003808092.1" /db_xref="GI:302343563" /db_xref="GeneID:9494602" /translation="MSDKEQFEPRIAAFFCNWCTYGGADLAGVSRLQYPPNIRVVRIP CTGRMSPKFILQAFRQGADGIWVSGCHPGDCHYIAGNMYARRRFAVLKNLLEYVGLEP GRIHFSWISSAEATKFQETVIEVTNAVRALGPAKFMLKDIAPQAQREVA" misc_feature 2365029..2365400 /locus_tag="Deba_2133" /note="Methyl-viologen-reducing hydrogenase, delta subunit; Region: FlpD; cl00831" /db_xref="CDD:120156" gene 2365457..2366407 /locus_tag="Deba_2134" /db_xref="GeneID:9494603" CDS 2365457..2366407 /locus_tag="Deba_2134" /note="InterPro IPR009051:IPR017896:IPR017900; KEGG: dal:Dalk_5062 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV2 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, subunit beta C terminus" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_003808093.1" /db_xref="GI:302343564" /db_xref="GeneID:9494603" /translation="MQQRTEKIREAAKRLLAEGAVDVVLGYRAGTVPMREQPFAARSV EEADELVWSSFCCNNLANFLVRRDEKTAIVAQGCVSRNIVGLLQENQIDRKRLKIIGV PCLGMVSRSKVLDKIGNKTVFAVEEQGEELVVKGKGFEERLNRKELLRDNCFTCQHRN PVISDEMVCEPVQDAAGGDIDKMAAPWEALAPEERWSTFKEAFADCIRCYACRDACPL CYCHVCFVDESKPQWCGKTQDEADVQTFHILRAFHCAGRCTDCGACESACPMGIKMRV LTSKIEKDVRQMYGYTPGMDEKATPTMSVYRPNDPQDFIK" misc_feature <2365490..>2365867 /locus_tag="Deba_2134" /note="Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]; Region: FrhB; COG1035" /db_xref="CDD:31238" misc_feature <2366024..>2366272 /locus_tag="Deba_2134" /note="Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]; Region: RnfC; COG4656" /db_xref="CDD:34275" gene 2366419..2367447 /locus_tag="Deba_2135" /db_xref="GeneID:9494604" CDS 2366419..2367447 /locus_tag="Deba_2135" /note="InterPro IPR009051:IPR017896:IPR017900; KEGG: sfu:Sfum_1971 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: A0LJQ3 4Fe-4S ferredoxin, iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /protein_id="YP_003808094.1" /db_xref="GI:302343565" /db_xref="GeneID:9494604" /translation="MADKILAKDKLDEFIAKLREEADVYAPARVGAKTTWQEVNGAEG LDWDFTNTEMSPKDFFFPQTECMMRFKNAKDDPEGMIMKAEELLPRSRVLLNMRPCDA KAFQVLDMIFVQDEMTDDVYWRDKREKTLVAGLACNEPCPTCFCSSVNCGPHHQVGMD LLFVDLGDKLLVKVLTEKGEAASADLPPAAAADEAKAAELKAAAEAAISSKVSLDKIN AREVLDLYNLPMWDKVHEACLNCGTCTFVCPTCHCFDIQDEVQGQEGRRVRNWDYCMS WLFTMHGTGHNPRGKKKDRVRQRFMHKFKYIPVKRDGEIGCVGCGRCIQMCPVNIDVR QVVDQMNS" misc_feature 2366434..>2366868 /locus_tag="Deba_2135" /note="anaerobic sulfite reductase subunit A; Provisional; Region: PRK15055" /db_xref="CDD:185015" misc_feature <2367061..2367444 /locus_tag="Deba_2135" /note="sulfite reductase, subunit A; Region: sulfite_red_A; TIGR02910" /db_xref="CDD:131956" gene 2367468..2368307 /locus_tag="Deba_2136" /db_xref="GeneID:9494605" CDS 2367468..2368307 /locus_tag="Deba_2136" /note="COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterProIPR017938:IPR001834:IPR017927:IPR012165:IPR 008333:IPR001433:IPR019480; KEGG: sfu:Sfum_1970 oxidoreductase FAD/NAD(P)-binding subunit; PFAM: dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; SPTR: A0LJQ2 Oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain" /codon_start=1 /transl_table=11 /product="dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein" /protein_id="YP_003808095.1" /db_xref="GI:302343566" /db_xref="GeneID:9494605" /translation="MRNTYVPYPVRIKDVIVETEDKQLRSFWFEFINPEDAEAFNYTP GQFAELSISGYGEIPIGIASSPTEGKDVLFTVNKVGVVSSQLHNMKPGDVMGIRGPLG NSYPLKQMEGKNVVIVAGGFAVTTLRSTMNWLLHPDNRDRYGKITFIYGARTPGMLLY ENEWRNWMQRGDCDIHVTIDRDCEGWDCLVGFVPSVTEQVAPPAENSVALICGPPIMI KFTQPVFDKLGWQPDQIVLSLENRMKCGIGICGRCNVGPYYVCKDGPVFTKEQLDKLP SEY" misc_feature 2367474..2368271 /locus_tag="Deba_2136" /note="cytochrome-c3 hydrogenase subunit gamma; Provisional; Region: PRK08345" /db_xref="CDD:181398" misc_feature 2367501..2368271 /locus_tag="Deba_2136" /note="Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is...; Region: sulfite_reductase_like; cd06221" /db_xref="CDD:99817" misc_feature order(2367633..2367635,2367639..2367650,2367690..2367698, 2367708..2367716,2367831..2367833,2368188..2368193) /locus_tag="Deba_2136" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99817" misc_feature order(2367639..2367641,2367645..2367650) /locus_tag="Deba_2136" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99817" misc_feature order(2367705..2367707,2367714..2367716,2367723..2367725, 2367741..2367743,2367765..2367767,2367771..2367773) /locus_tag="Deba_2136" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99817" misc_feature order(2367816..2367818,2367828..2367839,2367843..2367845) /locus_tag="Deba_2136" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99817" misc_feature order(2367831..2367836,2367918..2367926,2368104..2368109) /locus_tag="Deba_2136" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99817" misc_feature order(2368200..2368202,2368215..2368217,2368224..2368226, 2368248..2368250) /locus_tag="Deba_2136" /note="Iron coordination center [ion binding]; other site" /db_xref="CDD:99817" gene 2368409..2369737 /locus_tag="Deba_2137" /db_xref="GeneID:9494606" CDS 2368409..2369737 /locus_tag="Deba_2137" /note="COGs: COG0247 Fe-S oxidoreductase; InterProIPR009051:IPR012285:IPR017896:IPR017900:IPR 017969:IPR004017; KEGG: sfu:Sfum_2146 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A0LK76 Putative uncharacterized protein; PFAM: Cysteine-rich domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808096.1" /db_xref="GI:302343567" /db_xref="GeneID:9494606" /translation="MPQAITPKTLSQEAHEKLKKANLNLCLTCGTCSGGCPITGNPSE DMQGMDIRKVYRMLAYGMVDEVVNSRFPWLCTGCGRCAAACPMDIDTPAIMGYMKHLR PRDQVPGILHKGVEQVLATGNNMGISKEDYLFTMADMGREMADDCCPGFYVPVDKQDA DILFFPNSKEVYGDFEDMLWWWKIFYAAKENWTIPSENWEAVDWGLFTGNYEATRILA QRKIDMMKKFNIKRMIMPDCGGGSYGCRMGMKTCAIDDPNNVVNWIYLYDYLKEIIAQ GRVKLDKSVNAGKIFTWHDSCKHGRELERHYGHGYFDEPRWIIQQCVDEFVDMEPNRM NGNCCGAGGGNWPMPYEADSVWHGRKKFESIKNSGAHVVVVGCSNCHDQIMKRLPKFY TDYKYEVKYIWELVADSLVIEPWDDDMVAKAEAEAAEQWERLGVDLDAGY" misc_feature 2368517..2369638 /locus_tag="Deba_2137" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" gene 2369898..2370326 /locus_tag="Deba_2138" /db_xref="GeneID:9494607" CDS 2369898..2370326 /locus_tag="Deba_2138" /EC_number="6.6.1.1" /note="COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: dau:Daud_1208 magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: B1I3V1 Magnesium chelatase" /codon_start=1 /transl_table=11 /product="Magnesium chelatase" /protein_id="YP_003808097.1" /db_xref="GI:302343568" /db_xref="GeneID:9494607" /translation="MHSLTEAFAFSAIVGQESMKQALLLNAVNHMVGGVLIRGEKGTA KSTAVRALAALLPQILVVEGCPFGCDPAAPAKLCPYCAQRLAKGEKLPNLLRKARVVD LPMGSTEDRLLSSLDSERAIKHGEKHFEPGILAEANRGVL" misc_feature 2369919..>2370323 /locus_tag="Deba_2138" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 2370978..2373125 /locus_tag="Deba_2139" /db_xref="GeneID:9494608" CDS 2370978..2373125 /locus_tag="Deba_2139" /note="COGs: COG0438 glycosyltransferase; InterPro IPR001296:IPR001173; KEGG: kpu:KP1_0662 hypothetical protein; PFAM: glycosyl transferase family 2; glycosyl transferase group 1; SPTR: C4X2L8 Putative uncharacterized protein; manually curated; PFAM: glycosyl transferases group 1; glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003808098.1" /db_xref="GI:302343569" /db_xref="GeneID:9494608" /translation="MPGAASSPERKPLKVCILACDIVGPIRNGGIGTAYTYLARFLKH HGHDVTILYTLGKYCEIGTIDQWIEFYNNEEIEFIPLPHILSTRFADNGISDSVRQSY DAMAWLKDKQFDVVHVSEWRGIGYFPLLAKRLGLLEHPPHFVVKCSSPTLWANKGGWQ LPMRLVELSYERLERCSVEWADTVISGSSDLLDWMIEHGYDLPAETYSHKNILPLIDD FLDGSKTGKREQVDELVFFGRLEPRKGIELFCRALDMFRHSDVKPRKITFLGKRSNLF NIKDALAARNYLGIEFEIIDNASQPEAIRYLKEPGRLAVMPSILENSSFCIYECLAYG IPFVASGTGGNPELVAQEYHDEVMFPLMPSAIFKSIVNALKNGAINPAPSFSLEESES IWSDWHYSLSNVLAAERSSRKTNAIESISEPPLISVCLSTYNRSHGARRAIESIKAQD YPNIEILVVDDGTDNPYDMAEMRRIADELHSEGHRVVFQENQYLGAVRNKCISEARGE YLFFHDDDNVALPGEIKKMFSAMQKTGCDILTTFGYKYVEEDDEFASYEEIIQKDLSH CDIIPFLGGGLALGLFKNVFGDSNSLLKKQVAIDVGGFTTDYGIIQEDHEFFAKCVLA GKKLLVYPEPTYIYRWSNRGMMRSQSAIAGRLRVARAYTQHIPRELEQIIYMAQSQFF ENNKNANFVRLMTPWIESIGEVSELMKNMTKKG" misc_feature 2371017..2372027 /locus_tag="Deba_2139" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" misc_feature 2372271..2372858 /locus_tag="Deba_2139" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761" /db_xref="CDD:132997" misc_feature order(2372274..2372276,2372352..2372354,2372517..2372519, 2372523..2372525) /locus_tag="Deba_2139" /note="active site" /db_xref="CDD:132997" gene 2373141..2374049 /locus_tag="Deba_2140" /db_xref="GeneID:9494609" CDS 2373141..2374049 /locus_tag="Deba_2140" /note="COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR008089:IPR002198:IPR001509; KEGG: sfu:Sfum_2190 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C0GQ58 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_003808099.1" /db_xref="GI:302343570" /db_xref="GeneID:9494609" /translation="MNILITGGAGFIGVNLTAKLNAIGVSPRIIDNEVLGKEANLAGL SYTYIKADIRDANACIDAVKGMDCVVHLAADTRVIPSIENPRFNFDNNTLGTFNLLEA MRQTKVGRIVAASTGGAILGERTPPVHEEMLPKPVSPYGASKLAMEGYLSAFAGSYGI AATALRFSNVYGERSIHKGSVVAAFFRRIIAGKSITIYGDGEQIRDYVYIKDLCDGII KAVNSGKAGVFQLGTGIPTTLNQLVALMREVTGREIEVLYEPFRDGEIRHTYCDIAKA RRELGFDPATPLKDGLTATWNWFLAQ" misc_feature 2373141..2374046 /locus_tag="Deba_2140" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature 2373144..2374037 /locus_tag="Deba_2140" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(2373159..2373161,2373165..2373170,2373174..2373176, 2373231..2373239,2373354..2373362,2373480..2373488, 2373558..2373560,2373570..2373572,2373639..2373650) /locus_tag="Deba_2140" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(2373414..2373416,2373486..2373488,2373558..2373560, 2373570..2373572) /locus_tag="Deba_2140" /note="active site" /db_xref="CDD:187535" gene 2374217..2376472 /locus_tag="Deba_2141" /db_xref="GeneID:9494610" CDS 2374217..2376472 /locus_tag="Deba_2141" /note="COGs: COG0281 Malic enzyme; InterProIPR016040:IPR015884:IPR012188:IPR012301:IPR 012302:IPR002505; KEGG: glo:Glov_1262 malic enzyme; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; SPTR: B3E7A4 Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., phosphate acetyltransferase; PFAM: Malic enzyme, NAD binding domain; phosphate acetyl/butaryl transferase; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase" /codon_start=1 /transl_table=11 /product="malic protein NAD-binding protein" /protein_id="YP_003808100.1" /db_xref="GI:302343571" /db_xref="GeneID:9494610" /translation="MHDQDALRYHRYPRPGKIEVTPTKPCMSQADLSLAYTPGVGVPC LRIKDDPDASFDYTSRGNLVGVITNGTAVLGLGHIGPLAGKPVMEGKAVLFKRFADLD VFDIEVNTTDPDEFIRTVELLEPTFGGINLEDIKAPDCFYIEDELSRRMSIPVFHDDQ HGTAIISAAALLNACELTGRRLETTRVVINGAGAAAMACAKRYIQLGVAPDNLLMVDS KGVIFQGRQAGMNPYKAAFARQTSLRTLEQAARGADVLVGLSVKGAFTPELLAVMAPK PIVFALANPDPEIDYHQAKAARPDAIVATGRSDYPNQVNNVLGFPFIFRGALDVRATT INEQMKQAAVLALAKLAREDVPDSVLRAYGGQPIHFGPEYLIPKPLDSRVLLAVTPAV ARAAVESGVARVGLPEPAAYLQALEARLGPEREIIRKIIIRAQQHPKRIVLPEGDHPV IMRAAHQAAAEGVARPILLGEPQRIQATAAGLGLSLEGVEIVDNLNSPLYDEFCDQLF ALRARKGWSREETRRQLRHRYVFGAMMVRQGLVDGQVHGVAHSYPDAIRPVLWVIPRR PDVAKVSGLYLMVLRQRTLLFADATINIHPSADDLAEIAMLSAEMARFLDMRPRVAML SFSNFGSTRHPDATRVQRAVEIVRQRQPELTIDGEMQADTAVDEMILGERFPFNRLGG PANVLIFPELSAANMAYKLLDRLGGATAVGPILMGLTKPFNVVQRGADMETVANVIAL TVAQAKAQTPA" misc_feature 2374223..2376451 /locus_tag="Deba_2141" /note="bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed; Region: PRK07232" /db_xref="CDD:180898" misc_feature 2374259..2374657 /locus_tag="Deba_2141" /note="Malic enzyme, N-terminal domain; Region: malic; pfam00390" /db_xref="CDD:144108" misc_feature 2374694..2375404 /locus_tag="Deba_2141" /note="NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311" /db_xref="CDD:133453" misc_feature order(2374790..2374801,2374865..2374870,2374991..2374996, 2375006..2375008,2375060..2375068,2375132..2375134, 2375156..2375158,2375162..2375164) /locus_tag="Deba_2141" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133453" misc_feature 2375516..2376460 /locus_tag="Deba_2141" /note="Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl00390" /db_xref="CDD:193798" gene complement(2376474..2376830) /locus_tag="Deba_2142" /db_xref="GeneID:9494611" CDS complement(2376474..2376830) /locus_tag="Deba_2142" /note="KEGG: cdl:CDR20291_3456 hypothetical protein; SPTR: C6LFD7 Hypothetical Cytosolic Protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808101.1" /db_xref="GI:302343572" /db_xref="GeneID:9494611" /translation="MAEGTGACGVNCLVCGLFRQGKCGCCGSGLEEQAQVKLAAQLKI MGGVCPILQCAVQRKIAYCSADCRLYPCHLLMSGPYPFSQAYLEMQLRRRGRPANKPP ADEPAGGQTPPGGRLH" gene complement(2376823..2377464) /locus_tag="Deba_2143" /db_xref="GeneID:9494612" CDS complement(2376823..2377464) /locus_tag="Deba_2143" /note="KEGG: sfu:Sfum_1719 hypothetical protein; SPTR: Q1NV86 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808102.1" /db_xref="GI:302343573" /db_xref="GeneID:9494612" /translation="MATADPEENTLFRWAEDLPLALWDDLRGRDPLAAAAACGARWDG ACFVLPLLGRDYCVEPAAMKLTSVEAPERRVGYQVALILVKTLAFSTGASPSGQMVTP RELVGGELFFNGPHAVNTPALEQRFGADGQGLIARALAMGGQSIDGADVAVRLPGLPM LPLWVLLWLADDEFPARAVVGVDSRTAQHLPLDGVWALTNLLIHRLTTGGGNG" misc_feature complement(2376847..2377326) /locus_tag="Deba_2143" /note="Domain of unknown function (DUF3786); Region: DUF3786; pfam12654" /db_xref="CDD:193131" gene complement(2377451..2379343) /locus_tag="Deba_2144" /db_xref="GeneID:9494613" CDS complement(2377451..2379343) /locus_tag="Deba_2144" /note="COGs: COG0777 Acetyl-CoA carboxylase subunit beta; InterPro IPR000438:IPR011762:IPR011763:IPR000022; KEGG: gsu:GSU2370 acetyl-CoA carboxylase, carboxyl transferase, subunit beta; PFAM: carboxyl transferase; SPTR: Q74AI4 Acetyl-CoA carboxylase, carboxyl transferase, subunit beta; PFAM: carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta" /codon_start=1 /transl_table=11 /product="carboxyl transferase" /protein_id="YP_003808103.1" /db_xref="GI:302343574" /db_xref="GeneID:9494613" /translation="MKLIDILKTRTRHPFRPRSSDIIQHVFQDFRDYGAKGDSLIIGE GHLDDRRVYVVGQEKPKPKKLRSAADVGKLNWGMLSAAEHSQVLRLLQRLQETGPHED AVLLSLIDTYGADISMESARQLQAFFIANLIRAYLNVPIRTISIVIGEGGSGGALALQ VADRRAAMEDALYATAPPESLAAIIFRDPGRIEQALAISKSRAKDLKHFNVIDTIIPQ TKRVDDVEGMAQNVRAYLEKTVKELSRARLEKLMQKRLDQAEEMGVVRRGKFYEIKRF IEKPLKSFSKPPVDIKLIADPSGATIHIDDTSYGDGTLMKPGQAYIRCGEERQGASGD GCGAVIALEDYLRNHQICPNCGKQHVLDAAGWVDALADAGTFHELFRNITVADVLPEE EIHDYYRQFLDRQKGCSSFNESLVTAHARVHGYPVVLAISEFAFAGGSMGVVFGEKFR MAVEYATRKRWPLISVCCSGGARLYEGIVALMQMTKTVAAVERLKRLGIPYISILADP SSGGAIASYAALGDVCIAEPNALVIFTGPRVMKARGFAVQDDLVRSDSLLAVSAETLE LADFYCDIRGIQEVTPRRDMRRSLARYLELYARFRAGEKQKKGQRPYMRRVVHSAGVE LDDGNG" misc_feature complement(2378543..2379310) /locus_tag="Deba_2144" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" misc_feature complement(2377544..2378344) /locus_tag="Deba_2144" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 2379565..2379641 /locus_tag="Deba_R0037" /db_xref="GeneID:9494614" tRNA 2379565..2379641 /locus_tag="Deba_R0037" /product="tRNA-His" /db_xref="GeneID:9494614" gene complement(2379972..2380328) /locus_tag="Deba_2145" /db_xref="GeneID:9494615" CDS complement(2379972..2380328) /locus_tag="Deba_2145" /note="InterPro IPR009875; KEGG: sth:STH863 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: Q67R45 Putative uncharacterized protein; PFAM: PilZ domain" /codon_start=1 /transl_table=11 /product="type IV pilus assembly PilZ" /protein_id="YP_003808104.1" /db_xref="GI:302343575" /db_xref="GeneID:9494615" /translation="MISVMEMEEPDPRRMSARRQVSLQATVEYLCPDGGWFPVRAWVT EVSAQGMRLRVPREATISQRDELHIFIHKHGIEATGKVSHVLEPADSHVATALGVKLT EISSQHYELWRRLVEA" misc_feature complement(2379975..2380295) /locus_tag="Deba_2145" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene 2380555..2381583 /locus_tag="Deba_2146" /db_xref="GeneID:9494616" CDS 2380555..2381583 /locus_tag="Deba_2146" /EC_number="1.1.1.169" /note="COGs: COG1893 Ketopantoate reductase; InterProIPR008927:IPR016040:IPR013328:IPR013332:IPR 013752:IPR003710; KEGG: scl:sce8654 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; PRIAM: 2-dehydropantoate 2-reductase; SPTR: A9G056 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="YP_003808105.1" /db_xref="GI:302343576" /db_xref="GeneID:9494616" /translation="MLTSESPTAVIGAGAIGGITAALMAKAGRNVELVCKHSQTTDRA LYPGLRLRGVCGEHEVRMQAVTNIGELSSPKDIVFLATKANDCLTAARQLAPFLTDDG VVVSLQNGISEDALGEILGRGRVIGCVVGWGATMHEPGELEMTSEGEFVLGNIDAQPD ERLPIIKSFLEFARPTRISDNIMGELYSKLIVNSCINSLGAISGWPLGQLLKSWRVRS IFIAQMREAMAVAAAMKLKVEPGGGGKLDYYRFVKGNGPLAILKRHLYVKAIGTKYAR IKSSSLQSLQRGRPTEVDYLNGYIVEKGKAFGVATPVNEAIVRMIKQIEEGSRRITPD NIAELPLA" misc_feature 2380621..2381547 /locus_tag="Deba_2146" /note="2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522" /db_xref="CDD:180603" misc_feature 2380621..2381022 /locus_tag="Deba_2146" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 2381095..2381529 /locus_tag="Deba_2146" /note="Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546" /db_xref="CDD:192064" gene complement(2381592..2382257) /locus_tag="Deba_2147" /db_xref="GeneID:9494617" CDS complement(2381592..2382257) /locus_tag="Deba_2147" /note="InterPro IPR016032:IPR000792:IPR011991; KEGG: sfu:Sfum_0947 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: A0LGU1 Two component transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family" /codon_start=1 /transl_table=11 /product="LuxR family transcriptional regulator" /protein_id="YP_003808106.1" /db_xref="GI:302343577" /db_xref="GeneID:9494617" /translation="MEAEQKIAKLQQVVQGLHGKLDSLRQAHEQLLEQHQALHGALAA KTAHIERLQNQLALGQQHMEQLKSRQDELTKTLLANNKALTILASSLESMRLESEQGM ARRIQALTLPILERLGRDDRMGRLRDELRVVVEELEDLAAGIGDGEGLLGRLTVSERR IAAMIKSGMSSKQIAANLNISLDTVKTHRRNIRRKLRINDAGASLRGFLQARVGRLEG HDD" misc_feature complement(<2381967..>2382254) /locus_tag="Deba_2147" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:162739" misc_feature complement(<2381664..2381798) /locus_tag="Deba_2147" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature complement(order(2381688..2381702,2381706..2381711, 2381715..2381720,2381742..2381750,2381787..2381795)) /locus_tag="Deba_2147" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" gene 2382464..2382835 /locus_tag="Deba_2148" /db_xref="GeneID:9494618" CDS 2382464..2382835 /locus_tag="Deba_2148" /note="InterPro IPR009875; KEGG: sfu:Sfum_3881 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: A0LQ48 Type IV pilus assembly PilZ; PFAM: PilZ domain" /codon_start=1 /transl_table=11 /product="type IV pilus assembly PilZ" /protein_id="YP_003808107.1" /db_xref="GI:302343578" /db_xref="GeneID:9494618" /translation="MASHRDKRKTQRYSAAKEAFVFLRPTFVNLGRVVDLSDGGAGLE YIADKGIAPEWAEVDIVLSDSGTHISRVPCRIVHDSPLDDQAMPLGLETRRCGLQWGE LTPRQQVHLKACTSYHGKFNA" misc_feature 2382479..2382808 /locus_tag="Deba_2148" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene 2383326..2384198 /locus_tag="Deba_2149" /db_xref="GeneID:9494619" CDS 2383326..2384198 /locus_tag="Deba_2149" /note="COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171; KEGG: dal:Dalk_3267 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; SPTR: B8FJ30 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase" /codon_start=1 /transl_table=11 /product="methylenetetrahydrofolate reductase" /protein_id="YP_003808108.1" /db_xref="GI:302343579" /db_xref="GeneID:9494619" /translation="MAFAEALKSKAFVVLVEMETPKGVDISGFIDNARHVVGRVDAAL IPDMSFAVMRMSALAGAVLLKQQGLEPIIQFSCRDRNRLALQGDLLAAHVLGVANVMA IDGEAIEMGDHLHAKPVYDLSAVGFLEAAQGLADGKDIGGRQLRGAPKFCLGARIEPW VDDAQCELRLGEARAAVKRGAKFLVGPPVFDLESFAGFMAKAKDVGAPIIASVLLLKS VGMARYLNQNLPGVCISEDTIRRIRQASDRPAECVKIAAETVKGLKKLCGGTLLVTAG WEDKLPGVLDAAGL" misc_feature 2383365..2384099 /locus_tag="Deba_2149" /note="Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine...; Region: MTHFR; cl00246" /db_xref="CDD:189071" misc_feature order(2383464..2383466,2383545..2383547,2383632..2383640, 2383692..2383697,2383761..2383763,2383767..2383769, 2383779..2383781,2383803..2383805,2383824..2383826, 2383833..2383835,2383842..2383847,2383878..2383880, 2383884..2383886) /locus_tag="Deba_2149" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:29637" gene 2384241..2387276 /locus_tag="Deba_2150" /db_xref="GeneID:9494620" CDS 2384241..2387276 /locus_tag="Deba_2150" /note="COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR013027:IPR000103:IPR016040:IPR017896:IPR 017900:IPR003953:IPR001450:IPR006076; KEGG: sfu:Sfum_3133 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LN04 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: FAD binding domain; 4Fe-4S binding domain; FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_003808109.1" /db_xref="GI:302343580" /db_xref="GeneID:9494620" /translation="MSDATQKGRLETVLVIGGGIAGLKSALDLAESGRQVVVTDKAPN LGGYLPLLDRQFPTNDCQICYLSPDMAPAGFDIGIGVMPLTEVVGVSGQAGDFTVELT TKPRYIDTELCTACGECLKAAPEGAVSFTPGLDHRSTTCLRYPQAVPQAFAINIDKVG QDTSWIKCCEPGAIKLDQKPESVKLNVGSIIVATGAELFDPTPLSDYFGYGQFPDVVT SLEFERILSPAGPTCGAFARPSDGRRPTRIGWVQCVGSRTTKAPGNPYCSSICCMFAM KEAAWAKEHFASDLDATIFYMDIRPMGKDYEQYYQRMKNDVGVNFVRCRPHTVRRDEA TNDLLLSYATEDGQQLEAALDMLVLATGFCASKEAVSTAQALGIELDKYNFVKVSDKA PVSTSREGVYACGMSTGPKDIPDSLMQASAAACLASAHLTPPEPVRYEKDLPPERDTA SETPKIGVFVADFGGNMAKYVDLAKVMAAAKTMPNVCCVEEIKVSYAGGQGLTQMIDS IKASGVNRVVVVGNSPRTHGKIYAEAVRRAGLNRAMVEIANVRDQDALVHRDAPEAAT HKAIMLVRMAVGRVKLAKPIYVHAQSLDKTALVVGGGVAGLTAALQLAKQGISVKLVE RDKQLGGMALNLAHTLGGEPVRPIVEELVAQVQASDKIEVILDALVVDHKGCVGDFTT GVQSGPAMYYQQIKHGVTIIATGGKAYKPEGYFYGKNPAVMTQVELGVKLAAGQTDGL DTVVMIQCVGSRNDANPACGRICCRSAVLNALEIKRKKPEATVVVLYRDMRTPYDSED NYRLARELGVLFARYEAGQPPKVADNGATMLVEFDDPILGRTVDVEATALVLSTPQVA DEEGLEDLCDIFKLQQTETGFLLEEHVKVRPVDTPEPGVFAAGSVLAPKSIDEAITQG AAAAGRAITVLAQESVQVSGGVAKVVGEMCAACLVCVRACPIGVPFINADGYSQIDPE KCLGCGICAAECPAKAIQLQGYDDDQIMGQTDALLEGVL" misc_feature 2384274..>2384381 /locus_tag="Deba_2150" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature <2384277..2385485 /locus_tag="Deba_2150" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature <2385159..>2385434 /locus_tag="Deba_2150" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 2385600..>2386304 /locus_tag="Deba_2150" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature <2386320..2387261 /locus_tag="Deba_2150" /note="Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]; Region: HdrA; COG1148" /db_xref="CDD:31342" misc_feature 2387142..2387210 /locus_tag="Deba_2150" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene 2387276..2387707 /locus_tag="Deba_2151" /db_xref="GeneID:9494621" CDS 2387276..2387707 /locus_tag="Deba_2151" /note="COGs: COG1908 Coenzyme F420-reducing hydrogenase subunit delta; InterPro IPR003813; KEGG: mta:Moth_1193 methyl-viologen-reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; SPTR: Q2RJ82 methyl-viologen-reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta" /codon_start=1 /transl_table=11 /product="methyl-viologen-reducing hydrogenase subunit delta" /protein_id="YP_003808110.1" /db_xref="GI:302343581" /db_xref="GeneID:9494621" /translation="MASFEPIIVAFACEYCAYTAADMAGIQRLSYPANVNVIKVPCTG KVDVLHIMRALQKGADGVLVAGCLDGDCHFKKGNNRAAKRVEYVQKTLNDIGIGGERV QMAYMSAGQGNVFASVATEFTEKIRALGPNPIKGGAQKAAA" misc_feature 2387297..2387665 /locus_tag="Deba_2151" /note="Methyl-viologen-reducing hydrogenase, delta subunit; Region: FlpD; cl00831" /db_xref="CDD:120156" gene 2387727..2388395 /locus_tag="Deba_2152" /db_xref="GeneID:9494622" CDS 2387727..2388395 /locus_tag="Deba_2152" /note="KEGG: dal:Dalk_3264 hypothetical protein; SPTR: B8FJ27 Putative uncharacterized protein; PFAM: methylene-tetrahydrofolate reductase C terminal" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808111.1" /db_xref="GI:302343582" /db_xref="GeneID:9494622" /translation="MIVAERKPIEEIMAYVAPFNKILLLGCNECVTVCYAGGRKEVGI LASALQMAFLKDGKKLEIDELTLERQCDPEYVEEIAKVAEKYDAICSMACGCGVQTVA GRYMDKPVFPMVNTSFMGASERQGVWAERCQGCGDCVLAYTGGICPVARCSKRIFNGP CGGSTKGSCEINPQVPCGWQLIWDRLTALGRTDLYEKIMPAKDWRTARDGGPRKIVRE DLLS" misc_feature 2388054..2388344 /locus_tag="Deba_2152" /note="Methylene-tetrahydrofolate reductase C terminal; Region: MTHFR_C; pfam12225" /db_xref="CDD:152660" gene 2388392..2389315 /locus_tag="Deba_2153" /db_xref="GeneID:9494623" CDS 2388392..2389315 /locus_tag="Deba_2153" /note="COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171; KEGG: dal:Dalk_2779 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; SPTR: B8FKU9 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase" /codon_start=1 /transl_table=11 /product="methylenetetrahydrofolate reductase" /protein_id="YP_003808112.1" /db_xref="GI:302343583" /db_xref="GeneID:9494623" /translation="MKSESNLEKVLAAGHFAVTGELGPPRGADIEAVKKKASHLVGKV DAVNITDNQTAMVRMASWATSLVAKQLGLEPNYQMVCRDRNRIAMQSDILGAAALGIN TILSLSGDHPSFGDHPQSSNVHDLDSMQLIQMIKCMRDEGKFMGGAEIKGAPKMFIGA AANPFGDPNELRVMRLAKKIAAGADFIQTQCIYNMDKFRAYMTKAHDLGLTEKCYILA GLTPLKSGGMAKYMATKVPGMEVPDDLVKRVASAPKEAQAEEGIKILLEQIEQVKEIP GVAGIHLMAIEWEHRVPEITERAGLLPRPTV" misc_feature 2388410..2389291 /locus_tag="Deba_2153" /note="Methylenetetrahydrofolate reductase; Region: MTHFR; pfam02219" /db_xref="CDD:145399" misc_feature 2388443..2389288 /locus_tag="Deba_2153" /note="Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine...; Region: MTHFR; cd00537" /db_xref="CDD:29637" misc_feature order(2388542..2388544,2388623..2388625,2388710..2388718, 2388770..2388775,2388872..2388874,2388878..2388880, 2388890..2388892,2388896..2388898,2388905..2388907, 2388914..2388916,2388923..2388928,2388953..2388955, 2388959..2388961,2389241..2389243) /locus_tag="Deba_2153" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:29637" gene 2389369..2389752 /locus_tag="Deba_2154" /db_xref="GeneID:9494624" CDS 2389369..2389752 /locus_tag="Deba_2154" /note="COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR001789; KEGG: dal:Dalk_3262 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FJ25 Response regulator receiver protein; PFAM: Response regulator receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_003808113.1" /db_xref="GI:302343584" /db_xref="GeneID:9494624" /translation="MAEPRYVLIVDDDPDLVEAVAMNLEARGFAVGKAYDGVEAWDSI KSKRPDLVVLDVMMPRKNGYEVCEELKNDNDYKDIPVILLTAVGSAVPSTAYTHQDGM KVLADDYVPKPVDLDKLAQMVAELI" misc_feature 2389387..2389737 /locus_tag="Deba_2154" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 2389390..2389749 /locus_tag="Deba_2154" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2389399..2389404,2389531..2389533,2389555..2389557, 2389621..2389623,2389693..2389695,2389702..2389707) /locus_tag="Deba_2154" /note="active site" /db_xref="CDD:29071" misc_feature 2389531..2389533 /locus_tag="Deba_2154" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2389540..2389545,2389549..2389557) /locus_tag="Deba_2154" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2389702..2389710 /locus_tag="Deba_2154" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 2389772..2390290 /locus_tag="Deba_2155" /db_xref="GeneID:9494625" CDS 2389772..2390290 /locus_tag="Deba_2155" /note="KEGG: ach:Achl_0449 alpha/beta hydrolase fold-3 domain protein; SPTR: B8HAI7 Alpha/beta hydrolase fold-3 domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808114.1" /db_xref="GI:302343585" /db_xref="GeneID:9494625" /translation="MSLPRLAGLKQSGELSLLLPRGGLGPPFFALCRGLAQRRVNIVF LAHDRSREQASVGLEPEDAPQALELARQIALDHGLGPPELIGQTTALTLFPLADNPAL PLIAVGRLAEAGVAPLAMATSLAAVTLLIGHRHLATALEALTRAFHLPAGVSPPQARV KVVQSPFFRRTD" gene 2390296..2390781 /locus_tag="Deba_2156" /db_xref="GeneID:9494626" CDS 2390296..2390781 /locus_tag="Deba_2156" /note="KEGG: mex:Mext_1994 beta-lactamase domain-containing protein; SPTR: A9W487 beta-lactamase domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808115.1" /db_xref="GI:302343586" /db_xref="GeneID:9494626" /translation="METVAVYNEHPVKVYGVKLIENLLLLEASGRQHDLPALALAAQD IDQRFRPALLMASWPDDAPRLCFCLERAQAAELERALERAGLTIDQRRPASLIHLQGP HFGDRFGIVALALDGLVLAGVEALAVAAAVHSLFVVVEPSLAERATRGLRDHFSPAGE A" gene 2390781..2392313 /locus_tag="Deba_2157" /db_xref="GeneID:9494627" CDS 2390781..2392313 /locus_tag="Deba_2157" /note="COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003594:IPR009082:IPR004358:IPR005467:IPR 000014:IPR000700:IPR001610:IPR003661:IPR013656:IPR013767; KEGG: sfu:Sfum_2807 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: A0LM33 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor signal transduction histidine kinase" /protein_id="YP_003808116.1" /db_xref="GI:302343587" /db_xref="GeneID:9494627" /translation="MAEQDNARAAMAELIFQALPTPTLVLNEHMVVQDVNRAFLTRYD LGRADVLGRRCFEVFHSQSLPCPPSRCRFRAAMSGHTGQSVIHEFVGLDGQAVIEEVA LSPLVDERGRVIGVIETIRDVTKAKLMENALIHANEFLNRVMDSMVDAVVVADLKGKV LLSNHQALKILEIPPGDEITNHRLQDFCPLEELRRLRKSLDQGGGRAEAVRTFLTNGQ GQRVPVLVNSAVVTREGKPVATVGVFHDLRHQIQLERHLSEARLQVVQSDKLARLGQL AAGVAHELNNPLTGITIYAELVKESLPPDSPLQDDMTNIVEDAQRCRDIVKDLLDYSR QTTVRVEDLDLNQVIEDAFNLIRDDALFLHVDVVRDYHKGPLTLEGDEKLLRQVFINL LSNAIDAMAGRGRLTVRTGLDGQGMRWAEISDTGPGIAPEHLDRIFDPFFTTKAPGKG TGLGLSVVYGVVSRAGGAVEVKNTGPNGTTFKVSLPEKADQSLKAFAEVYMTNPSGDV AP" misc_feature 2390826..2391152 /locus_tag="Deba_2157" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature 2390835..2391149 /locus_tag="Deba_2157" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(2390883..2390885,2390895..2390897,2390913..2390915, 2390952..2390963,2391045..2391047,2391060..2391062) /locus_tag="Deba_2157" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(2390943..2390945,2390955..2390957,2390985..2390987, 2390994..2390999,2391081..2391083,2391087..2391089) /locus_tag="Deba_2157" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature <2391252..2392124 /locus_tag="Deba_2157" /note="Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]; Region: NtrY; COG5000" /db_xref="CDD:34605" misc_feature 2391588..2391782 /locus_tag="Deba_2157" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(2391606..2391608,2391618..2391620,2391630..2391632, 2391639..2391641,2391651..2391653,2391660..2391662, 2391711..2391713,2391723..2391725,2391732..2391734, 2391744..2391746,2391753..2391755,2391765..2391767) /locus_tag="Deba_2157" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 2391624..2391626 /locus_tag="Deba_2157" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 2391933..2392235 /locus_tag="Deba_2157" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(2391951..2391953,2391963..2391965,2391972..2391974, 2392044..2392046,2392050..2392052,2392056..2392058, 2392062..2392067,2392134..2392145,2392191..2392193, 2392197..2392199,2392212..2392217,2392221..2392223) /locus_tag="Deba_2157" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 2391963..2391965 /locus_tag="Deba_2157" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(2392056..2392058,2392062..2392064,2392134..2392136, 2392140..2392142) /locus_tag="Deba_2157" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 2392310..2393761 /locus_tag="Deba_2158" /db_xref="GeneID:9494628" CDS 2392310..2393761 /locus_tag="Deba_2158" /note="COGs: COG5002 Signal transduction histidine kinase; InterProIPR003594:IPR011006:IPR009082:IPR004358:IPR 005467:IPR001789:IPR000014:IPR003661:IPR013656; KEGG: dal:Dalk_2419 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; histidine kinase A domain protein; SPTR: B8FB26 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; septum site-determining protein MinC" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_003808117.1" /db_xref="GI:302343588" /db_xref="GeneID:9494628" /translation="MSPDSPYRILVVDDEERIRQAVRRVLETMGMVVMEAANGREGLE RIADYKPDLVLVDLMMPVMDGMEMIGRARKSHASLAFVVITGYATLEKAVEAMKQGAD DFLAKPFKPQELRLVIERVLKRVATLQDMAIEKSRTRVLVESMTNGVLVIDTERRVVL MNPALRRLARWDEGEVLGRDLEEALPCPAVAQALSEVLAGQGDQDGQSVSCQITLGLA EEPMHLQVTCSPFLDSRGRLVGALAVFDDVTALRRLDELKSEYVSTVAHEIASPLSSV LSQLQNLSQGLAGELNERQGQIVRRARLRIEGIINLSKDLLDLSKIEAGAMGQAEERL AVGPILEEAVDIMRAKAADKAQSLTLEMAAELPRVAGVQRELQEVFVNLISNAVRYTP QGGRIDVRATAQDGWVRVDVSDNGFGVPIEDQEKIFQRFYRVKDANTRNIIGTGLGLP IVKRVVEAMGGNVRLRSKPGQGSTFSVLLPAVG" misc_feature 2392334..2392666 /locus_tag="Deba_2158" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 2392337..2392675 /locus_tag="Deba_2158" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2392346..2392351,2392478..2392480,2392502..2392504, 2392562..2392564,2392619..2392621,2392628..2392633) /locus_tag="Deba_2158" /note="active site" /db_xref="CDD:29071" misc_feature 2392478..2392480 /locus_tag="Deba_2158" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2392487..2392492,2392496..2392504) /locus_tag="Deba_2158" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2392628..2392636 /locus_tag="Deba_2158" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 2392709..2393746 /locus_tag="Deba_2158" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature 2392715..2392912 /locus_tag="Deba_2158" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 2393435..2393746 /locus_tag="Deba_2158" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(2393453..2393455,2393465..2393467,2393474..2393476, 2393543..2393545,2393549..2393551,2393555..2393557, 2393561..2393566,2393645..2393656,2393702..2393704, 2393708..2393710,2393723..2393728,2393732..2393734) /locus_tag="Deba_2158" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 2393465..2393467 /locus_tag="Deba_2158" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(2393555..2393557,2393561..2393563,2393645..2393647, 2393651..2393653) /locus_tag="Deba_2158" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 2393995..2394786 /locus_tag="Deba_2159" /db_xref="GeneID:9494629" CDS 2393995..2394786 /locus_tag="Deba_2159" /note="COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: sus:Acid_0656 transketolase domain-containing protein; PFAM: transketolase; SPTR: Q02BA9 transketolase; PFAM: Transketolase, thiamine diphosphate binding domain" /codon_start=1 /transl_table=11 /product="transketolase" /protein_id="YP_003808118.1" /db_xref="GI:302343589" /db_xref="GeneID:9494629" /translation="MEYNADALNLATQKARLRLLKMHHDAQCGHLGCNLSCLDALITL YHVVMGGDDAFVLSKGHSAGALYVALWSIGRLSDADLDTFCRNGTRLPAHPTTDAPGV HFSTGSLGHGPSLAAGMALARRAKGQAGDVYCLCSDGEWQEGSCWEALIFSVHHRLDN LVILLDQNGLQAFGRTVDVASIADLSSRLAAFGASVATVDGHDPKAIAAGIARRESAK PHIVVLRTRKGNGLHFEGLVESHYLALSEEQFLAACADTTGGTIN" misc_feature 2394031..2394753 /locus_tag="Deba_2159" /note="Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012" /db_xref="CDD:48175" misc_feature order(2394175..2394177,2394313..2394315,2394319..2394321, 2394406..2394411,2394421..2394423,2394496..2394498, 2394502..2394504,2394508..2394510,2394715..2394717) /locus_tag="Deba_2159" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48175" misc_feature order(2394247..2394249,2394271..2394276,2394280..2394282, 2394316..2394321,2394325..2394327,2394415..2394426, 2394433..2394438,2394445..2394447,2394457..2394459, 2394505..2394510,2394556..2394558) /locus_tag="Deba_2159" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48175" gene 2394783..2395673 /locus_tag="Deba_2160" /db_xref="GeneID:9494630" CDS 2394783..2395673 /locus_tag="Deba_2160" /note="COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR009014:IPR005475; KEGG: sus:Acid_0657 transketolase, central region; PFAM: transketolase; SPTR: Q02BA8 Transketolase, central region; manually curated; PFAM: Transketolase, pyrimidine binding domain" /codon_start=1 /transl_table=11 /product="transketolase" /protein_id="YP_003808119.1" /db_xref="GI:302343590" /db_xref="GeneID:9494630" /translation="MRDSFARAVIARHGRKPTFFLTGDLGFMALEGVREALGDFFINC GVAEQNMVSVAAGLARGGFSVYVYSIAPFCYARPFEQIRNDLGGLPVCLVGNGGGFGY GVMGPSHHALEDCSAMSCLGLRVLVPAFDDDIPAMLESVNSPTYLRLGRDERPSGSQA PGYAPWRPLLEGRAGVLVALGPLAGLAWGCLARFEPAARPSLWAVTEFPLEPLPEPLC EAIAKGQPLGVLEEHVAHGGLGMQLTHCLASRGVWPRRFVHRHALRYPSGTYGSQGFH RAECGLDAAGLEDMIARMSA" misc_feature 2394789..2395235 /locus_tag="Deba_2160" /note="Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033" /db_xref="CDD:132916" misc_feature order(2394831..2394833,2394837..2394839,2394852..2394854, 2394900..2394902,2394909..2394911,2394915..2394932, 2394939..2394944,2394948..2394956,2395011..2395013, 2395020..2395025,2395095..2395097,2395104..2395106, 2395149..2395154,2395206..2395208) /locus_tag="Deba_2160" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature order(2394852..2394854,2394909..2394911,2394918..2394926, 2395008..2395013,2395017..2395019,2395095..2395097, 2395101..2395103,2395128..2395133,2395137..2395142) /locus_tag="Deba_2160" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature <2394870..2395655 /locus_tag="Deba_2160" /note="Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]; Region: Dxs; COG1154" /db_xref="CDD:31348" misc_feature order(2394918..2394920,2394924..2394926,2394999..2395001, 2395011..2395013) /locus_tag="Deba_2160" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132916" gene 2395726..2396712 /locus_tag="Deba_2161" /pseudo /db_xref="GeneID:9494631" gene 2396734..2397741 /locus_tag="Deba_2162" /db_xref="GeneID:9494632" CDS 2396734..2397741 /locus_tag="Deba_2162" /note="COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sus:Acid_0658 NAD-dependent epimerase/dehydratase; PFAM: glycosyl transferase family 2; SPTR: Q02BA7 NAD-dependent epimerase/dehydratase; manually curated; PFAM: glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_003808120.1" /db_xref="GI:302343591" /db_xref="GeneID:9494632" /translation="MTKKTHARKSKNSLTAIIACYRDEEAIPIMHERLVAVFNKIGVE YEIIFVDDCSPDNGRERIREISAADPHVLGISHSRNFGSQAAFRSGMELASKEACVLL DGDLQDPPEIIEQFVEKWRQGADVVYGRRVKREMPFWLDLCYKGFYRIFAMLSEVAIP KDAGDFSLIDRSVMQWILQCEERDFFLRGIRAYVGFNQVGVDYVRPERMFGRSTNNWI RNIGWAKKAIFSFSRTPLHMLTFLGGLAFAGSVGLALASVIIRLLAPESTPKGMTFLS LLIMLFGSATLLGLGLLGEYLGKVFEEAKARPPFIRKHFIMHGRIKPADARPIQARDD Q" misc_feature 2396782..2397672 /locus_tag="Deba_2162" /note="undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714" /db_xref="CDD:182669" misc_feature 2396782..2397321 /locus_tag="Deba_2162" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature order(2396788..2396790,2396794..2396796,2397046..2397048) /locus_tag="Deba_2162" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133030" misc_feature order(2396887..2396889,2397043..2397048) /locus_tag="Deba_2162" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature 2397040..2397048 /locus_tag="Deba_2162" /note="DXD motif; other site" /db_xref="CDD:133030" gene 2397738..2398646 /locus_tag="Deba_2163" /db_xref="GeneID:9494633" CDS 2397738..2398646 /locus_tag="Deba_2163" /note="InterPro IPR013217; KEGG: sus:Acid_0659 methyltransferase type 11; PFAM: methyltransferase type 12; SPTR: Q02BA6 methyltransferase type 11; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_003808121.1" /db_xref="GI:302343592" /db_xref="GeneID:9494633" /translation="MRATDAAERACPTCGKRHGRLFAKERINPDLVGSFTYASRKTPE FMRHRLVRCLYCDTVYAPSPPPERVLSRAYASADYDSWEEAECAAADYARVIAPLLKG LPALGGAVEIGAGNGAFLPHLRRAGFQAVLGVEPSRKAIEAASAQARPLLREGVFTPE TLAENRPALICSFMTLEHLPDPRGFVQAAHDALVPGGLLALVTHDWKAALNRLLGLRS PIIDIEHLQLFTARALQRLLRDRGFEDIQTAAFSNRYPLRYWLRLSPLPAGVRRALTG PLGRLGLLTLPLSLPVGNVMATGRKK" misc_feature 2398065..2398355 /locus_tag="Deba_2163" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2398071..2398091,2398140..2398145,2398254..2398256) /locus_tag="Deba_2163" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 2398661..2399395 /locus_tag="Deba_2164" /db_xref="GeneID:9494634" CDS 2398661..2399395 /locus_tag="Deba_2164" /note="COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013216; KEGG: ppd:Ppro_0039 ArsR family transcriptional regulator; PFAM: methyltransferase type 11; SPTR: B0VEV0 Putative 3-demethylubiquinone-9 3-O-methyltransferase; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="YP_003808122.1" /db_xref="GI:302343593" /db_xref="GeneID:9494634" /translation="MRQVKTRHNVRRFDEDVRRSGSYSYTADRLSCRLANGRISSGIL AALPMAGKSVLDLGCGDGTYSLELAAAGAASVLGVDAAPAAVESATQRAAERGLQGLA SFQYGDINDLRLPHRFDCVVLRGVLHHLPDPAAAIISAARWSDTVLILEPNGLNPALK IIERLSRYHRAHEERSFLPRTLRRWCREAGFSSIQTRFINLVPMFCPDWLARPLAAVG PALELVPLARAFCCGQIVVLAQKQAG" misc_feature 2398787..2399350 /locus_tag="Deba_2164" /note="hypothetical protein; Provisional; Region: PRK08317" /db_xref="CDD:181382" misc_feature 2398820..2399086 /locus_tag="Deba_2164" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2398829..2398849,2398898..2398903,2398979..2398987, 2399030..2399032) /locus_tag="Deba_2164" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 2399405..2400067 /locus_tag="Deba_2165" /db_xref="GeneID:9494635" CDS 2399405..2400067 /locus_tag="Deba_2165" /note="InterPro IPR013217; KEGG: dma:DMR_45250 hypothetical protein; PFAM: methyltransferase type 12; SPTR: C4XRV0 Putative uncharacterized protein; PFAM: methyltransferase domain" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_003808123.1" /db_xref="GI:302343594" /db_xref="GeneID:9494635" /translation="MALLTQTKFARLWLIFQHIIGGTADKRRLALRHWQGQTNVLEVG CSAGNIAGAFARLPGVRYTGLDVDGAAIKLAQKRFAAHHRLRFLHASAEEHAACGDIY DYILVAGVLHHVDDDMAVSLLTATRGLASDDCRVVISEPEALRPDDNIIFKCFYRLEQ GQYLRSRQSLLALAQRAGLEIASAENHDVGTGIPGLPVVARFSVIVGGWPAEPCAGRR SQ" misc_feature 2399519..2399794 /locus_tag="Deba_2165" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2399531..2399551,2399600..2399605,2399672..2399680, 2399726..2399728) /locus_tag="Deba_2165" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 2400067..2401881 /locus_tag="Deba_2166" /db_xref="GeneID:9494636" CDS 2400067..2401881 /locus_tag="Deba_2166" /note="KEGG: nmu:Nmul_A0293 hypothetical protein; SPTR: Q2YCC0 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808124.1" /db_xref="GI:302343595" /db_xref="GeneID:9494636" /translation="MAHDETTQRDYTGLDRLVAKIIDAFLVFGASATLAYYLVFFSRL PAWVWYPACVVALIAVGWLFRRIAGQPGPQPRPKPGSSGPLVALILLCLLSFSINLFT LRPDADEFCFYHRALHAAEHLAQPISLHHTAHDLRDLPPISPAHLLSTVEIAAALLAK ALHLPAMTVVHQGLGGLTLALLPLVYFLLFRILGRDVWPSLAGVAGVLIFLALSGDTH QAWGNFTILRAWEGKCVLIALGLPLFWAFISRFMRRGEQADLLRLHALMLLSIGLSGS AFFLVPYSGGLLAMVSCLTGRANGHYWRNLARLTTVLVTPAILALAVVSPFFVAMSNF AVWSSPNFSSLRAMATVIGSPQAAALHAALSLLLLYHHWRDRRIKAFLFYAVAAALIP IMPLLDALIVKVTMAKAYWRLAYAIPLPALYGLAAACLVDRKNSKNAWWALLIVVVCL GLFVLKQPAINQRVIHGLHQYKFPPKQLVAVEHLSRLASQNAVILAPAQVAWWLGLLR PDLRFVATFPMETKHAFDNYGQPEEGIKRRQIAAFLNAPPVTNPNPEALRPYLTRASL LVLPRHAPRQAVEKALAASGERWSFHGDNAGWLIWLKE" gene 2402072..2403415 /locus_tag="Deba_2167" /db_xref="GeneID:9494637" CDS 2402072..2403415 /locus_tag="Deba_2167" /note="KEGG: rru:Rru_B0007 glycosyl transferase, group 1; SPTR: Q2RMP2 glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808125.1" /db_xref="GI:302343596" /db_xref="GeneID:9494637" /translation="MIEKFFNAEHYARQLGGGLSTDETTLEHYQRVGEGQGLCPGPDF DPVSFKITRPDLAARGDLLSVFARLRRDEPSLTAPTMAELFPDIPVDPSHCHYEPGTD LVSHDRCDAEQAKAFATADEFVLPTNKGAYKFHAPPADLLLERLANDAPLSLMRYPHG FWTCLTLINRVRQILSQHLPEGLLAPDELTNAVIRLCRERMAGVLLVRTVFIEGFLTE VEKDLHAPLPEDVLCGVSFKGYPTLDRRLFIIPGQGPHNDRLCAEITNTFSKHFSPDN SLIDGATPKRWAISGSLRGIAEALKSRPVIVIGPPWFSSLGRRLGLMCYAHVAIASKG TFGVRRTLLARALAAARAALRTGGRRPVMLFQCGGSLAAWLIRRLHAAEPGVFYWDFG QALTAWHLDEAFYDFPWMKVYKSAMIQNNGLEGMYRELAGPHYEQWLGARVQNDG" gene 2403526..2404527 /locus_tag="Deba_2168" /db_xref="GeneID:9494638" CDS 2403526..2404527 /locus_tag="Deba_2168" /note="KEGG: sse:Ssed_3004 hypothetical protein; SPTR: B7S3F5 Putative uncharacterized protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808126.1" /db_xref="GI:302343597" /db_xref="GeneID:9494638" /translation="MEIRKRLCRLHIGAPKTGSTAIQAFCAENRAALLARGVLYPDAS LRGFGHHDLAFLLAGGYPPWATPQPRTLDELLADLARSVTGHDGDVLLSSENFYLLAD AAVVRAALERCGLLDGRQARVMVYLRRQDEAHASWYNQTIKAQGYAHTFEECLAGFAG LFDYQAMLRPWAQAFGPRNIEVRLYEPANLPGGDIRLDFLAALGLAVDGFDLPPKRPN TEIGPDLLEFQRLVNCLPLSHQEKRRFHRQLMELSARADGGDLFAHGSPLGLARRREI IAAHAPGNAAVARQFLGRENLFAPLDETAAPPLVQGGLSVEKLASIMGWLLIQNAVD" gene 2404552..2405229 /locus_tag="Deba_2169" /db_xref="GeneID:9494639" CDS 2404552..2405229 /locus_tag="Deba_2169" /note="InterPro IPR013217; KEGG: cts:Ctha_1954 RNA methyltransferase, TrmA family; PFAM: methyltransferase type 12; SPTR: A0Y156 Membrane-associated protein" /codon_start=1 /transl_table=11 /product="methyltransferase type 12" /protein_id="YP_003808127.1" /db_xref="GI:302343598" /db_xref="GeneID:9494639" /translation="MSFYKQHPLTCDSKDFWGQVKRTVNGKPVPREQIQMIVDAVQDG LALGPEDHFLDLCCGNGALSTFFFAACGGGLGVDFSEPLIETAKANFEQPPNFIYQLA DVLDYANNEPQPERFTKALCYGSFQYLAKDAAEALLAVLRRRFVGLRRLYLGNLPDRQ RMGEFFRPESYTPGVEDDPGSPIGVWRARHDIAQLASQTGWVAEFRIMPGDFYAAHYR FDAILRR" misc_feature 2404666..>2404869 /locus_tag="Deba_2169" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 2405240..2406061 /locus_tag="Deba_2170" /db_xref="GeneID:9494640" CDS 2405240..2406061 /locus_tag="Deba_2170" /note="KEGG: nar:Saro_0601 sulfotransferase; SPTR: Q2GAS5 Sulfotransferase; PFAM: Sulfotransferase domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003808128.1" /db_xref="GI:302343599" /db_xref="GeneID:9494640" /translation="MFDRIIWISGMPRSGTNWLAQIMASNPMVRLKLCPLFSYEFKNA MDLDSSPAQWAEFFTKVYQTPSEYMDQDYLRRDGLAPLFLEREPNPSVLAIKSNRFHH LSRSILEKHPGVTFVGIVRHPCATIHSWLTNPLEFPADCHPRQQWRDGACRKTGPGEF WGFDDWKKVTAMFLDLAQRFPQRFLLVRYESIVFDAQGQIKQLFERLGLGWPAQTRRF LKESQSTHNPHKRAVHKNPAVATRWKTEMDPGMVKTILDELRGTPLECFLGRENQ" gene 2406058..2407266 /locus_tag="Deba_2171" /db_xref="GeneID:9494641" CDS 2406058..2407266 /locus_tag="Deba_2171" /note="COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015424:IPR015421:IPR015422:IPR000653; KEGG: gme:Gmet_2332 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Q39T67 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family" /codon_start=1 /transl_table=11 /product="DegT/DnrJ/EryC1/StrS aminotransferase" /protein_id="YP_003808129.1" /db_xref="GI:302343600" /db_xref="GeneID:9494641" /translation="MKRRLEDLAIFGGPRLFESFRPTGQLSLPDSRVFFKHARTIFDQ RRLTNNGPLVRMLEERLALLHQSAHCVSFCNASVAIVLLLRLLGGDDGGNVLMPTFTY PGLPHIALWAGFKPVFCDVDQHTHAIDVASVAANLTPRSVVILAVHQVQSPCQIDELT TLARQRGVALLFDSVHGLGCTHRGKPIGGFGAAEVFSLHATKLLNGFEGGYVTTNDDA LAAELRSARSFGFQGKDNVVRLGLNGKLNEIHAALALAALDDLEQTIQANRARHEAYR RLFADLPGLNILEYATNERHNYELTIFEMTTAWPLSRDDTLRLLNAENALARPYYSPP LHHSEHCPPGCGDVSLPVAEALATRFIQMPVGDLVSLADIEALAELMTFVGANGPTVA ARLARDGRPS" misc_feature 2406172..2407194 /locus_tag="Deba_2171" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(2406283..2406288,2406295..2406297,2406496..2406498, 2406574..2406576,2406583..2406585,2406646..2406648, 2406661..2406663) /locus_tag="Deba_2171" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 2406661..2406663 /locus_tag="Deba_2171" /note="catalytic residue [active]" /db_xref="CDD:99742" gene 2407263..2408486 /locus_tag="Deba_2172" /db_xref="GeneID:9494642" CDS 2407263..2408486 /locus_tag="Deba_2172" /note="COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015424:IPR015421:IPR015422:IPR000653; KEGG: gme:Gmet_2332 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Q39T67 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family" /codon_start=1 /transl_table=11 /product="DegT/DnrJ/EryC1/StrS aminotransferase" /protein_id="YP_003808130.1" /db_xref="GI:302343601" /db_xref="GeneID:9494642" /translation="MKTRASDLAILGGQPTFAQPLHVGQLNLPDWPRFQQAFEELFRR RWFTNHGPLVRQLEQRLAEFLDVRHVVCMTNGTLALMVALQALDLRGRVIAPAFTFPA TVQALTWAGLEPLFCDVDEKRHVITADLARPLIEDGVSAILGVHLWGRPCDPEALADL AQRHGLALLFDAAHAFGCAHNGRLIGGLGRVEIFSFHATKVLNAAEGGCATTDDDEMA ARLRTVRNFHNQETFARVGARINAKMSEAQAAMALLSLEDYPRNAQANQRALDAYAHG LAGLPGLELLDPNLPQAHNRQFVVLDVDAQQAGLSRDELTAALEAENVLARRYFMPGI HRSPPYNRLYPHFVEGLPVTDRLSARLMQLPSGQAVAEHDIATVCALTRTILEHAPQV SRRLRAYQAKGCERP" misc_feature 2407359..2408429 /locus_tag="Deba_2172" /note="Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399" /db_xref="CDD:30748" misc_feature 2407362..2408402 /locus_tag="Deba_2172" /note="3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616" /db_xref="CDD:99740" misc_feature order(2407488..2407493,2407773..2407775,2407782..2407784, 2407845..2407847,2407857..2407862,2408247..2408249) /locus_tag="Deba_2172" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99740" misc_feature order(2407488..2407493,2407557..2407559,2407773..2407775, 2407782..2407784,2407845..2407847,2407860..2407862) /locus_tag="Deba_2172" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99740" misc_feature 2407860..2407862 /locus_tag="Deba_2172" /note="catalytic residue [active]" /db_xref="CDD:99740" gene 2408483..2409190 /locus_tag="Deba_2173" /db_xref="GeneID:9494643" CDS 2408483..2409190 /locus_tag="Deba_2173" /note="InterPro IPR014985; KEGG: psb:Psyr_1578 hypothetical protein; PFAM: WbqC-like family protein; SPTR: Q4ZW46 Putative uncharacterized protein; PFAM: WbqC-like protein family" /codon_start=1 /transl_table=11 /product="WbqC-like family protein" /protein_id="YP_003808131.1" /db_xref="GI:302343602" /db_xref="GeneID:9494643" /translation="MKLGVMQPYFFPHLGYFDLIRRVDRFVLFDTAQFTPKSWMTRNR ILHPASGWQYILLPVAQHPRFAAISQIRAKDPEAAMRRILGQLGHYRKRAPHYAAVTR IVEDAFATARSDSLTDINAAGLARVCQELGLPFQIEICSELGLNLPPVEHPGGWALEI SAALGASEYINPPGGRELFRPEEFAARGVGLGFTQTPDFSYPCPPYAFEPQLSILDVL MWRSPAQIRADLAAAQG" misc_feature 2408501..2409163 /locus_tag="Deba_2173" /note="WbqC-like protein family; Region: WbqC; pfam08889" /db_xref="CDD:149829" gene complement(2409213..2409662) /locus_tag="Deba_2174" /db_xref="GeneID:9494644" CDS complement(2409213..2409662) /locus_tag="Deba_2174" /note="COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871; KEGG: pth:PTH_0581 NifU-like protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: A5D4Q3 NifU homolog; PFAM: NifU-like N terminal domain" /codon_start=1 /transl_table=11 /product="nitrogen-fixing NifU domain protein" /protein_id="YP_003808132.1" /db_xref="GI:302343603" /db_xref="GeneID:9494644" /translation="MEQHHTHDVEHDLQEAREAGLSDEFYAHALTPQNVGMLPNPDGH AMPKGACGDYIELFLRIDDDLITDARFMPEGCLNTVACGSAVTSLAKGASLREAAEID AERIEGLLGGLHKDHRHCAVLAAATLKAAIRDYLKKRSEPWKRPYAK" misc_feature complement(<2409378..2409581) /locus_tag="Deba_2174" /note="Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664" /db_xref="CDD:143480" misc_feature complement(order(2409435..2409437,2409510..2409512)) /locus_tag="Deba_2174" /note="active site" /db_xref="CDD:143480" gene complement(2409765..2410640) /locus_tag="Deba_2175" /db_xref="GeneID:9494645" CDS complement(2409765..2410640) /locus_tag="Deba_2175" /note="COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR002586:IPR001450; KEGG: sfu:Sfum_3408 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNS9 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_003808133.1" /db_xref="GI:302343604" /db_xref="GeneID:9494645" /translation="MKELLVISGKGGAGKTSITAGLAALAGPKVLLDLDVDAPDMHLL LQPKPWRTEPFISGNLAVTRRGDCTGCGLCAELCAFGAARLDEGGLAVIDESACEGCK LCVAMCPAQAIDFPPRDCGNWHLSDTRLGPMVHALLHPGAENSGRLISLLRDQARQLA QERGLELIIADGSPGVGCPVISSLSGCNLALCVTEPTPSGLHDLGRVLELCAHFKVMA KVVVNKADLNPDMAVAIEEHCAERGLECLGRLPFDPQVVEAASRGLTIVEHDPNGPTS REMAGLWEKLGAAMA" misc_feature complement(2409783..2410640) /locus_tag="Deba_2175" /note="MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]; Region: COG1149" /db_xref="CDD:31343" misc_feature complement(2409888..2410634) /locus_tag="Deba_2175" /note="This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion; Region: Fer4_NifH_child; cd03110" /db_xref="CDD:73339" misc_feature complement(2410590..2410616) /locus_tag="Deba_2175" /note="P loop nucleotide binding; other site" /db_xref="CDD:73339" misc_feature complement(2410116..2410130) /locus_tag="Deba_2175" /note="switch II; other site" /db_xref="CDD:73339" gene complement(2410637..2411503) /locus_tag="Deba_2176" /db_xref="GeneID:9494646" CDS complement(2410637..2411503) /locus_tag="Deba_2176" /note="COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR002586:IPR001450; KEGG: sfu:Sfum_3409 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNT0 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; 4Fe-4S binding domain" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_003808134.1" /db_xref="GI:302343605" /db_xref="GeneID:9494646" /translation="MILAVASGKGGTGKTTVSAALAAALAARGPSLLVDLDVEEPNAH LFFDMTWDEEHVEHMPVPLVDEDRCTRCGACSDLCQFKAIAVLGQAIVTFDPMCHGCG GCWTICPEKCIAQGRRELGLVRLGRANDAPGLALASGLLRVGEAMSPPLMKRVMAAVQ PPVQTVIDAPPGTSCPAMTATRQADAILLVSEPTPFGLYDLQLAVEAMEPMNKPMAVI INRHGLGQDRVSAFCAKKDLPVLARIPFDRAIAEGYSRGQRLEAAAPQWGPRLVRIFD WFVGQLAKGGAR" misc_feature complement(2410769..2411419) /locus_tag="Deba_2176" /note="This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion; Region: Fer4_NifH_child; cd03110" /db_xref="CDD:73339" misc_feature complement(2411168..2411302) /locus_tag="Deba_2176" /note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838" /db_xref="CDD:193313" misc_feature complement(2410988..2411002) /locus_tag="Deba_2176" /note="switch II; other site" /db_xref="CDD:73339" gene complement(2411500..2411859) /locus_tag="Deba_2177" /db_xref="GeneID:9494647" CDS complement(2411500..2411859) /locus_tag="Deba_2177" /note="COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: dds:Ddes_1867 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: Q5DUA6 Putative uncharacterized protein orp (Fragment); PFAM: Dinitrogenase iron-molybdenum cofactor" /codon_start=1 /transl_table=11 /product="Dinitrogenase iron-molybdenum cofactor biosynthesis protein" /protein_id="YP_003808135.1" /db_xref="GI:302343606" /db_xref="GeneID:9494647" /translation="MSKIAVSSQGDSLESLVDPRFGRAANFLVIDPATMRFDVLSNSQ ARGMGQGAGIQAAEMVAKSGAKTVISGIVGPKAWQALRAAGLDVVQEATGSVGEAVKA FIEGRLKVSAEPMGGGW" misc_feature complement(2411548..2411853) /locus_tag="Deba_2177" /note="This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of...; Region: MTH1175; cd00851" /db_xref="CDD:29645" gene complement(2411866..2412705) /locus_tag="Deba_2178" /db_xref="GeneID:9494648" CDS complement(2411866..2412705) /locus_tag="Deba_2178" /note="COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR000808:IPR019591; KEGG: sfu:Sfum_3613 ParA family protein; PFAM: ATPase-like, ParA/MinD; SPTR: A0LPD1 ParA family protein; PFAM: ParA/MinD ATPase like; Anion-transporting ATPase" /codon_start=1 /transl_table=11 /product="ATPase-like, ParA/MinD" /protein_id="YP_003808136.1" /db_xref="GI:302343607" /db_xref="GeneID:9494648" /translation="MTQNNDCATSGVQPVDERVARALADIRFKVVVMSGKGGVGKSTV AAYLALGLADKGYKVGLLDVDLHGPSIPRMLGLSSHAVVQEDEQRILPVVYNSNLRVI SIESLMPNRESSVIWRGPLKIGVVKQFIGDVMWDHLDFLVIDSPPGTGDVPLTVAQTV EGAYALVVTTPQEIALADVRKSLDFCRQVELPVIGVVENMSGLVCPHCGKEVELFGQG GGEAMAKNLGLDILARLPIDPRIIQAADQGRPLKLMLDDTGSGPAYQQMVAGVLKRTA ERR" misc_feature complement(2411869..2412579) /locus_tag="Deba_2178" /note="ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192" /db_xref="CDD:31385" misc_feature complement(2411989..2412579) /locus_tag="Deba_2178" /note="MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037" /db_xref="CDD:73300" gene complement(2412908..2414284) /locus_tag="Deba_2179" /db_xref="GeneID:9494649" CDS complement(2412908..2414284) /locus_tag="Deba_2179" /note="COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR009057:IPR020441:IPR002078:IPR000014:IPR 000700:IPR001610:IPR003593:IPR013656:IPR002197; KEGG: sfu:Sfum_3592 sigma-54 dependent trancsriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: ATPase AAA; PAS domain containing protein; PAC repeat-containing protein; SPTR: A0LPB0 Sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_003808137.1" /db_xref="GI:302343608" /db_xref="GeneID:9494649" /translation="MSGHGPAPHPDLTGLILDAIAEGVFTVDQDLIITSFNRAAAQIT GVSASEALGRKCHQVLGSSVCQAACPLRRSIQTGHPSDELEVELRAADGRIIPARIRT AVLRDATGRLLGGVETFRDISAERHLQKRISAAYTFCDIKGKSAAMTRLFAVLPDVAA SRASVLISGESGTGKELVARALHDLSDCHEGPFVAVNCGAIPEALVESELFGHLRGAF TGAQRQRVGRFAAADGGTLFLDEIGELPLAVQAKLLRALDRGEITPLGADLAIRVRAR VVAATNRDLEAEVAAGRFRSDLYYRLNVLQLRLPPLRQRREDIPLLAGHFLERLAAER CESPARLSESAMALLLDHQWPGNVRELENALEHAVVLARGGTIEPRHLPESLRRLHGA ARPAEANGSATLDLAQRERQALIMALEAHGGHRAKAAAALGVSTTTLWRKMKRFGLED HFKKQRIL" misc_feature complement(2413919..2414239) /locus_tag="Deba_2179" /note="PAS fold; Region: PAS; pfam00989" /db_xref="CDD:144544" misc_feature complement(2413919..2414227) /locus_tag="Deba_2179" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(2414006..2414008,2414021..2414023, 2414099..2414110,2414147..2414149,2414165..2414167, 2414177..2414179)) /locus_tag="Deba_2179" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(2413979..2413981,2413985..2413987, 2414069..2414074,2414081..2414083,2414105..2414107, 2414117..2414119)) /locus_tag="Deba_2179" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(2413376..2413807) /locus_tag="Deba_2179" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2413757..2413780) /locus_tag="Deba_2179" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2413439..2413441,2413565..2413567, 2413754..2413777)) /locus_tag="Deba_2179" /note="ATP binding site [chemical binding]; other site"