LOCUS NC_014257 6032 bp DNA circular BCT 21-JUN-2010 DEFINITION Helicobacter pylori plasmid HPB8p, complete sequence. ACCESSION NC_014257 VERSION NC_014257.1 GI:298717635 DBLINK Project: 49873 KEYWORDS . SOURCE Helicobacter pylori ORGANISM Helicobacter pylori Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter. REFERENCE 1 (bases 1 to 6032) AUTHORS Farnbacher,M., Jahns,T., Willrodt,D., Daniel,R., Haas,R., Goesmann,A., Kurtz,S. and Rieder,G. TITLE Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8 JOURNAL BMC Genomics 11, 335 (2010) PUBMED 20507619 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6032) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (18-JUN-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6032) AUTHORS Blom,J. TITLE Direct Submission JOURNAL Submitted (26-JAN-2010) Blom J., Cebitec, Bielefeld University, Universitaetsstr. 25, 33615, GERMANY COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to FN665651. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6032 /organism="Helicobacter pylori" /mol_type="genomic DNA" /strain="B8" /db_xref="taxon:210" /plasmid="HPB8p" gene complement(1013..1270) /locus_tag="HPB8_p0001" /db_xref="GeneID:9348668" CDS complement(1013..1270) /locus_tag="HPB8_p0001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003729733.1" /db_xref="GI:298717636" /db_xref="GeneID:9348668" /translation="MNTTICLEKTIKSISKMALIVSYFDEVVLELRQQKPLAPKHKDH ILKGEWYPCRECHIRPDVLLVYIVKNNTLWLLRLGSHSELF" misc_feature complement(1016..1246) /locus_tag="HPB8_p0001" /note="Plasmid stabilisation system protein; Region: Plasmid_stabil; cl11422" /db_xref="CDD:196226" gene complement(1267..1545) /locus_tag="HPB8_p0002" /db_xref="GeneID:9348664" CDS complement(1267..1545) /locus_tag="HPB8_p0002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003729734.1" /db_xref="GI:298717637" /db_xref="GeneID:9348664" /translation="MLKNVEMGANFYKELGKLEKQLAKYQSKVLEIKTQMKEIKKRYS QAKKDEKKAKNLETLQAIKDVESGANFTKIDSLDELTNELKREIYAGY" misc_feature complement(<1336..1488) /locus_tag="HPB8_p0002" /note="60Kd inner membrane protein; Region: 60KD_IMP; cl00489" /db_xref="CDD:174237" gene 1735..2079 /locus_tag="HPB8_p0003" /db_xref="GeneID:9348665" CDS 1735..2079 /locus_tag="HPB8_p0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003729735.1" /db_xref="GI:298717638" /db_xref="GeneID:9348665" /translation="MPKLSDNKNITKRLRLNQTEWQTIQNQMQEKNLNFSQLVLNSLL HQNSQTPTKSKKQKAIANKELVIELAKWGNNLNQIAKCLNTNKGAWDRLALEQLIEIS NQLEQIRSKYVG" misc_feature 1927..2061 /locus_tag="HPB8_p0003" /note="Bacterial mobilisation protein (MobC); Region: MobC; pfam05713" /db_xref="CDD:114439" gene 2069..4084 /locus_tag="HPB8_p0004" /db_xref="GeneID:9348666" CDS 2069..4084 /locus_tag="HPB8_p0004" /function="putative relaxase" /codon_start=1 /transl_table=11 /product="MobA-like protein" /protein_id="YP_003729736.1" /db_xref="GI:298717639" /db_xref="GeneID:9348666" /translation="MLVKFWGTNQGGGDGDGSVNYLLNERVKQGTAKVLKGDANLTKS LLLSLTQKHKACVGCLSFEESNIDESLKYELMESFENALLTQEMQGRYNILWVEHTDK GRLELNFVIPKIDLERQKAFNPYYHKVDLKRIDTWQNVVNLKYTFTNPKDLEKQQISN YYNTKTPQGKAIFKNYKELDNYLYNAVTQGLLNSRTEIIELLQASNYEITRQGKDYIS VKLPNQQKAKRLKGIIYDERFTEQRLIEQELREYSQNKDTSRERDTREISTAPNTTPR ATQSLIQELRDLEQQLHRHIEYKQRYYEKLHQSTSKDPREPKEQLPRVRDSQQRTQQN HANETTRARETNPQEPSQEILTNAPNFHHGISHHGGNISGDILSHHSTQQGQGIRAFT ERSLSVKTRNRPTKQRQSTENLQPNADQEIRGKHAERTLKQATERFNQRSRELAERER KLTASKEQRDSKFRERQKRAIEQARESYSRISKTKQRLLEIRGRNLELERELRNAIPN AQHTISQISSFRESRESRIKASDTNLRAERNLAQKLFTEHVQADFTARITERSNQRAR DFTSSTQRITNSIRDFRDNAQARARTILHNIYARTRDAINAIKDIYRNAKERIRDFFQ REDERLSKRMEQETRELHTKTTQLDRKIREHNQKIENERNYSRGYGR" misc_feature <2228..2746 /locus_tag="HPB8_p0004" /note="Relaxase/Mobilisation nuclease domain; Region: Relaxase; cl01584" /db_xref="CDD:174650" misc_feature 2772..3335 /locus_tag="HPB8_p0004" /note="potential protein location (conserved hypothetical protein) that overlaps protein (MobA-like protein)" misc_feature 3345..4046 /locus_tag="HPB8_p0004" /note="potential protein location (conserved hypothetical protein) that overlaps protein (MobA-like protein)" gene complement(4104..5705) /locus_tag="HPB8_p0007" /db_xref="GeneID:9348667" CDS complement(4104..5705) /locus_tag="HPB8_p0007" /function="replication initiation" /codon_start=1 /transl_table=11 /product="replication initiation protein A" /protein_id="YP_003729739.1" /db_xref="GI:298717640" /db_xref="GeneID:9348667" /translation="MEFDQLESQRSDLQKVLKELDKLQQTPQIELQKQEIQKRINKIT DTIIKELLSKHEIKKETQEPTLTPKPTPLKEPQNTPTPCKDLMVTTPKDNAYTTYHNN ANKVNLGKLSEREANLLFAIFQRLKDQGNTLIRFEPQDLKRMLNIDISNERLSEVVIK LWDSIKTADFWKISETETSIIQENYMLFSRCKIELNKPSKDLKYLEIQLNDNYQYLLN NLGMGQYTSFNLLEFQRVRGKYAKTLYRLLKQYKSTGILSVEWTQFRELLDIPKDYDM TNIDKFVLKIALKELRKIYPFEHLSYKKERKSHDKRKVTHIDFYFEQLPEGETKKQKQ ADKQRAKRDIKLVAWDINNQIAKRNAKATMEARFLELKTLIGYQFRHNDSGIVLQIDN TTFEKNQMFLHVSYPKNKHNPQKFLVSNKTFALELLFINGYSLKKDSLLEEIDPPKIH PITNEPIKEFDEYIGKTIHITNFNVDQCPEGINNYLKITRIVKLNDNRICVSVQDVDK PEKLLKPFIAKDEKHLKNWFKKHYR" misc_feature complement(4743..5426) /locus_tag="HPB8_p0007" /note="Initiator Replication protein; Region: Rep_3; cl03080" /db_xref="CDD:186548" misc_feature 4464..4856 /note="potential protein location (conserved hypothetical protein) that overlaps protein (replication initiation protein A)" misc_feature 5431..5694 /note="potential protein location (conserved hypothetical protein) that overlaps protein (replication initiation protein A)" ORIGIN 1 aagaactacc cttatcgttg gcaagaacta cccttatcgt tggcaagaac tacccttatc 61 gttggcaaga actaccctta tcgttggcaa gaactacccc tttattcatt ttcactcaaa 121 aatgagaaac cctacagctt cgttatttac ggggttctaa cccccaatcc ctcgcatgcg 181 cgcgcgttgt aaaaacatgt aaaaacaaca tagttgttaa aacatgtaat aaaaacaacg 241 cgcatgacgc gctacatatt ttgggatttt agtttttagt ggttttttag cctagtgcca 301 ggtttgcgct atcttgtttg attttgcttg cgcaaaaaca gctacggcta acgcctatgc 361 tttcaaactg cgatgcgctt ttgtctagct cgctaacgct tcgcttattg gtgtttgctt 421 gacagcaaac aatcggtgca aaaccgctta tttgctcgct aacgctcgct aggcggtttt 481 gtaggggtag gatggctaac tcaagttata tgcgctttta gatgctacac aagtgagatt 541 ggctaaatgg ttagcttcta gaaagggaaa tgaagttttt ttgaaatcaa ttaggttgtt 601 tggatttttt agctgttttt aactatctac aatcgcctac aaccaacgaa aagcaaaaaa 661 ccgactaata tactacatac aagctaaaaa acgctcaaaa cgaaaatatg agcgtttttc 721 tagttagcaa ctagtttgaa gaaaaaatca gtctttttta gtcagattgc aagtctttag 781 tcatagtgtt ctgttagata ctagactagc tttcagaaag acaaaaaaag acccatgaca 841 actccccaaa actaacatca gaccttttag ttcttgtgtt tggattttca actttcaaag 901 tgtcaaacaa atatcttttc tagtttctaa aagcttcaaa ttcgtgtttt ttttcaaaaa 961 tcttgaatta gaattgaaaa tttattctag gcgattttaa gaagaaattt gtctaaaaca 1021 actcactatg gctacctaac ctaagcaacc aaagagtgtt atttttgact atataaacca 1081 acaaaacatc aggtctaatg tggcattctc tacaaggata ccactcgcct tttaatatgt 1141 ggtctttatg ctttggagct agtggttttt gttgtcttaa ttctaaaacc acttcatcaa 1201 agtagcttac tatcaaagcc atttttgaga tactttttat agtcttttct aaacatattg 1261 tggtattcaa tatccagcat atatctctct ttttaactca tttgtaagct catctaaact 1321 atcaattttt gtaaaattag ccccactctc tacatcttta atcgcttgta aagtctctaa 1381 atttttagct tttttctcat ctttcttagc ttgagaatat cgctttttaa tctctttcat 1441 ttgtgtttta atttctaaaa ctttactttg atatttagct aattgttttt ctaatttgcc 1501 aagttcttta taaaaattag cccccatttc tacatttttt aacatcttat ctccttaact 1561 taattaatca taataactcc attatatcta aattaaccac atgctaaaat aatagggcaa 1621 ggatacttgt gtaaccacaa agaacggcga tgtgaaaaat cgcctatcct tgctagtggg 1681 acacccccta gaaccacccc ataaatcaaa attaagggat aagtcaaaca aaacatgcca 1741 aaactttctg ataacaaaaa cataaccaaa cgcttacgac taaatcaaac agaatggcaa 1801 actatccaaa atcagatgca agaaaaaaat ttaaactttt cgcaattggt tttaaattct 1861 cttttacacc aaaactcaca aactccaaca aaatctaaaa aacaaaaagc gattgctaat 1921 aaagaactag ttattgaatt agctaaatgg ggaaacaatt taaatcaaat cgctaaatgt 1981 ctcaacacta ataagggggc atgggataga ttagccttag aacaactgat agaaatcagc 2041 aatcaattag aacaaataag atccaagtat gttggttaaa ttttggggga ctaatcaagg 2101 gggtggcgat ggtgatggga gcgttaatta cttgcttaat gaaagagtaa aacaaggcac 2161 agctaaagtt ttaaagggcg atgctaatct aactaaaagc cttttactct ctctcaccca 2221 aaaacacaag gcatgcgtag ggtgcttatc ctttgaagag tcgaatattg atgagagttt 2281 aaaatacgag cttatggaaa gctttgaaaa tgctttactc acacaagaaa tgcaagggcg 2341 ttacaacatc ttatgggtag aacacacaga caaggggcgt ttggagttaa attttgttat 2401 acccaaaatt gatttagaga gacagaaagc gtttaaccct tactatcaca aagtggattt 2461 aaaacgcatt gatacttggc aaaatgtagt taatctaaaa tacaccttta caaaccccaa 2521 agacctagaa aaacaacaaa ttagtaacta ctacaacaca aaaaccccac aaggtaaggc 2581 tatctttaag aactacaaag agctagataa ttacctttac aacgccgtaa cacaaggctt 2641 attaaattca aggacagaaa taatagagct tttacaagcg agtaattatg agattactag 2701 acaaggcaag gattatatca gtgtcaagct ccctaaccaa caaaaagcca aacgattgaa 2761 aggaataatt tatgatgaac gatttactga acaaagactt attgaacaag aacttagaga 2821 atatagccag aacaaagata caagccgaga aagagataca agagaaatat caacagctcc 2881 taacacaaca ccaagagcta cacaatctct catacaagag cttagagatt tggaacaaca 2941 actacacaga cacattgaat acaaacaacg ctactatgaa aaattacatc aatctacttc 3001 aaaagaccca agagagccta aagaacagct acctagagtt agagacagcc aacaaagaac 3061 acaacaaaac catgcaaacg aaactacaag agctagagaa acaaatccac aagaacctag 3121 ccaagaaatc cttactaatg cccctaactt tcatcatggg attagtcatc atgggggcaa 3181 tattagtggg gacatacttt ctcatcattc tacccagcaa ggacaaggaa ttagagcttt 3241 cacagaaaga agtctttcag ttaaaacgag aaatagacca actaaacaac gccaatctac 3301 agagaattta caaccaaatg ccgaccaaga aataagggga aaacatgcag aacgaacact 3361 taaacaagct acagaacgct ttaatcaacg aagtagagaa cttgcagaac gagaaagaaa 3421 gcttactgca agcaaagaac agcgagatag caagtttaga gaacgacaga aacgagctat 3481 tgagcaagct agagaaagtt acagcagaat ttcaaaaact aagcaacgat tacttgaaat 3541 tagaggcaga aaccttgaac ttgaaagaga gctacgaaac gctatcccaa acgcacaaca 3601 cactattagc caaatttcaa gctttagaga aagcagagaa agccgaatta aagcaagtga 3661 tacaaacctt agagcagaaa gaaatctcgc tcaaaaatta tttacagagc atgtgcaagc 3721 agattttaca gcaagaatta cagagcgttc aaatcaaaga gcaagagact tcacaagctc 3781 aacacaaaga attacaaact caattagaga ttttagagac aacgctcaag caagagctag 3841 aacaatccta cacaacattt atgcaagaac acgagacgca attaacgcaa ttaaagacat 3901 ctacagaaac gcaaaagaac gaattagaga cttctttcaa agagaagatg aacgactttc 3961 aaagcgaatg gaacaagaaa caagagagct tcatacaaaa acaacacaac tggatagaaa 4021 gattagagaa cacaatcaaa aaatagaaaa cgagagaaat tatagtcgtg ggtatgggcg 4081 gtaagaatta aaaaattctt tttttatctg tagtgtttct taaaccaatt cttcaaatgt 4141 ttctcatctt tagcaatgaa aggttttaga agtttctcag gcttgtccac atcttggact 4201 gaaacacaga tccgattgtc attcagtttc acaatcctag tgattttcag gtaattgttg 4261 attccctcag ggcattgatc cacattgaag ttggtgatgt ggatcgtttt gccgatgtat 4321 tcatcaaatt ccttaatagg ttcgttagtg atagggtgga ttttaggggg atcaatttct 4381 tctagcaagc tgtctttttt taggctgtat ccattaatga acagtagttc caaagcgaat 4441 gtcttgtttg acacaaggaa tttttggggg ttatgcttat tttttgggta agaaacatgc 4501 aaaaacattt gattcttttc aaaagtggtg ttgtcaatct gcaaaacgat cccactgtca 4561 ttgtgcctga actgatagcc gatcaaggtt ttcaattcaa gaaacctagc ttccatagtg 4621 gcttttgcgt ttcttttagc gatttggtta ttgatatccc atgcgacaag cttgatgtcc 4681 cttttagcgc gttgcttgtc ggcttgtttt tgtttcttgg tttcgccttc aggcaattgt 4741 tcaaaataaa aatcaatgtg ggttaccttg cgtttgtcat ggcttttgcg ttctttcttg 4801 tagctcaagt gttcaaaagg atagattttt ctgagttctt tgagagcgat ttttaggaca 4861 aatttatcaa tatttgtcat gtcataatct tttggaatgt ctaaaagttc cctgaattga 4921 gtccattcca cgcttaaaat ccctgtgctt ttgtattgct tgagcaagcg atagagcgtt 4981 ttagcgtatt tacctctcac tctttgaaat tctaacagat tgaaagaagt gtattgaccc 5041 atgcctaaat tgttaagcaa gtattggtag ttatcattga gttggatttc taaatacttt 5101 aaatctttac tgggtttgtt caattcaatt ttacaccgac taaaaagcat gtaattttct 5161 tgaatgattg aagtttctgt ttcgctaatt ttccaaaaat cagcggtttt aatgctatcc 5221 catagcttaa taaccacttc tgataagcgc tcattagaaa tatctatgtt tagcattcgc 5281 tttaaatctt gcggttcaaa acgaatgagg gtattccctt gatctttaag cctttgaaaa 5341 atagcgaata aaagattggc ttccctttcg ctcaatttcc ctagattgac cttattagcg 5401 ttattgtggt aggtggtata ggcgttatct ttgggggttg taaccattaa atctttgcat 5461 ggtgttggcg tgttttgtgg ttctttgagt ggtgtgggtt ttggggttag agtgggttct 5521 tgggtttctt ttttgatttc atgctttgat agtaattctt taatgattgt gtctgttatt 5581 ttattgatgc gtttttgtat ttcttgtttt tgtagttcaa tttgtggggt ttgttggagt 5641 ttatctaatt cttttaacac tttttgcaag tctgatcttt gtgattctaa ttgatcaaat 5701 tccactctat actccttatc ttttggtgta taataagtgt gatcgtatca gtatgcttat 5761 aagggtctaa ccccataaac aaggggttag accacgaata agcctaatat agcaattgtg 5821 cgagaattac taatactaga actaatacga caaatacttt cacattgata cctcctaacg 5881 aggtgtcgcc ctctctatcc tccaacccac taactcaaca aagtcaagct aattgctcca 5941 aattttgccg cacataggaa ataccgctat gaaagcatct tcacacgctg ttattatagc 6001 taaaaattgt taattgtagg tatatcgttg gc //