LOCUS NC_014009 5398 bp DNA circular BCT 07-APR-2010 DEFINITION Sphingobium japonicum UT26S plasmid pUT2, complete sequence. ACCESSION NC_014009 VERSION NC_014009.1 GI:294057975 DBLINK Project:47077 KEYWORDS . SOURCE Sphingobium japonicum UT26S ORGANISM Sphingobium japonicum UT26S Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium. REFERENCE 1 AUTHORS Nagata,Y., Ohtsubo,Y., Oguchi,A., Ankai,A., Yashiro,I., Fukui,S., Kamata,S., Takahashi,M., Ichikawa,N., Tanikawa,S., Fujita,N. and Tsuda,M. TITLE Complete genome sequence of gamma-hexachlorocyclohexane degrading bacterium Sphingobium japonicum UT26S JOURNAL Unpublished REFERENCE 2 (bases 1 to 5398) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-APR-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5398) AUTHORS Nagata,Y., Ohtsubo,Y., Oguchi,A., Ankai,A., Yashiro,I., Fukui,S., Kamata,S., Takahashi,M., Ichikawa,N., Tanikawa,S., Tsuda,M. and Fujita,N. TITLE Direct Submission JOURNAL Submitted (04-JUL-2008) Contact:Director-General Department of Biotechnology National Institure of Technology and Evaluation, NITE Genome Analysis Center (NGAC), Department of Biotechnology; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan URL :http://www.bio.nite.go.jp/ COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. 'Nagata, Y., Ohtsubo, Y. and Tsuda, M. are at Department of Environmental Life Sciences Graduate School of Life Science, Tohoku University. The other authors are at NITE Genome Analysis Center (NGAC). Please visit our web site. URL:http://www.bio.nite.go.jp/ DOGAN ; Database of Genomes Analyzed at NITE. The database contains genome sequence data, physical maps and the genomic and proteomic data of the microorganisms analyzed. URL:http://www.bio.nite.go.jp/dogan/Top The microbial strain and microbial genomic DNA clones used for the sequencing project are available through the NBRC. URL:http://www.nbrc.nite.go.jp/e/index.html. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5398 /organism="Sphingobium japonicum UT26S" /mol_type="genomic DNA" /strain="UT26S (= NBRC 101211)" /db_xref="NBRC:101211" /db_xref="taxon:452662" /plasmid="pUT2" gene 1..654 /gene="rep" /locus_tag="SJA_P3-00010" /db_xref="GeneID:8960315" CDS 1..654 /gene="rep" /locus_tag="SJA_P3-00010" /note="replicase" /codon_start=1 /transl_table=11 /product="plasmid replication initiation protein Rep" /protein_id="YP_003550320.1" /db_xref="GI:294057976" /db_xref="GeneID:8960315" /translation="MTDTRTLPATKPQPSRWVQTDRASHEAWARLSASNPKAGALLHL LAARVGDNNAVVVSHKTLAELLGVRSITTIKTAITALVSGNWIEVRRIGENGTVNAYV LNDRVVWSGPREGLRYSLFSATVVVSDSEQPDRDTLGKQEPLRRLPPIGERQLPHGDG LPPPSQPFLDGIEPDLPATEQQNLDPAMQEELSQLVIGLGNRLRAPDASPPDDATDI" gene 690..1082 /locus_tag="SJA_P3-00020" /db_xref="GeneID:8960313" CDS 690..1082 /locus_tag="SJA_P3-00020" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003550321.1" /db_xref="GI:294057977" /db_xref="GeneID:8960313" /translation="MGITLREASEKVGVTRQTLMKAIKTGRVSAEKSDNGEWRIEPVE LFRVWPPVNGVQQPLQPNITGSDTPGLQAENRLLREQVAELREERNAWREQAQRLALT DQRAVSQPSSRPGFWSRLFGRQGDSPSG" gene 1224..2024 /locus_tag="SJA_P3-00030" /db_xref="GeneID:8960308" CDS 1224..2024 /locus_tag="SJA_P3-00030" /note="opacity protein or related surface antigen" /codon_start=1 /transl_table=11 /product="putative outer surface protein" /protein_id="YP_003550322.1" /db_xref="GI:294057978" /db_xref="GeneID:8960308" /translation="MFRVYLGGLLMKKIITCAVLASAALATPAFAQDEADKGMYFQLR TGVADLNNPDFAIIDTWSEPNNRLDTKLNTKSAATFGGELGYDFGGVRVGLELAYQRN KVKGITLKSLNGTAITAEDLSDVVEGLGELDIISVDDLDGVDINGTTISATNGSVAKL RQLAVMANVTYDIPLGGNTFKPYVGVGLGAVGSHLKALGEDDGSVRFAWQLRAGAAVK VTKGIDLTADYTYRQTGSGKLNFGDEDVEYRLGKTKASLFQVGLRFTL" gene complement(2147..3370) /gene="traA" /locus_tag="SJA_P3-00040" /db_xref="GeneID:8960309" CDS complement(2147..3370) /gene="traA" /locus_tag="SJA_P3-00040" /note="MobA/MobL family protein / ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member" /codon_start=1 /transl_table=11 /product="conjugative transfer protein TraA" /protein_id="YP_003550323.1" /db_xref="GI:294057979" /db_xref="GeneID:8960309" /translation="MASFHLAVKAIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTR KQGVEHSELMLPTDAPEWAADRERLWNAAELAETRKNATVAREYEIALPVELSADERR ELALGLAREISERHGVAVDVSIHAPGREGDQRNHHAHLLTTTRRLGPEGLGEKTRELD QKQSGEVERWRERWAEMQNRALELANVPDRVDHRSHQRQGIEQEPTVHMGPSATAMER RAEQVAAREGRAYEPVTAVGQHNAGVVERAGLRQYIERGTEWLRDMGQRIAGRLHDVA ASLSGAVERDRREAAEVQLAREAQERLAADRARQEAQERQQVRERERVAEKFNTIAGK REAGAHGYGDHNSDWKATPEALRKAVDAYNGANQHTKDLYIEQIQREPKMARAVGQLI GERELILQRDRGMSL" gene 3538..3813 /locus_tag="SJA_P3-00050" /db_xref="GeneID:8960314" CDS 3538..3813 /locus_tag="SJA_P3-00050" /codon_start=1 /transl_table=11 /product="putative mobilization protein" /protein_id="YP_003550324.1" /db_xref="GI:294057980" /db_xref="GeneID:8960314" /translation="MAAPTPEAIENARRKVEQAKARLQALEARAATLNRKQDARRKII LGGLLLDAAMKDPAWESRLNDLMGRISRDQDRKAFDGWTFKGGPADA" gene 3806..4246 /locus_tag="SJA_P3-00060" /db_xref="GeneID:8960310" CDS 3806..4246 /locus_tag="SJA_P3-00060" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003550325.1" /db_xref="GI:294057981" /db_xref="GeneID:8960310" /translation="MPDPLDPAEFDAPPPADPGADYRVLLDAMRQAGADGIAQQSAAL VQRIEQDARQRLEWGQRMGTAVDDLQRVAGQLQRVSAGIWWDRLKEWLSAALIGLGLI FAAALAYQWAKEPKIEQRLYGCTARWDAKTGKCKGDWVPLQARE" gene complement(4257..4577) /gene="pemK" /locus_tag="SJA_P3-00070" /db_xref="GeneID:8960311" CDS complement(4257..4577) /gene="pemK" /locus_tag="SJA_P3-00070" /note="transcriptional modulator of MazE/toxin MazF / growth inhibitor" /codon_start=1 /transl_table=11 /product="PemK-like protein" /protein_id="YP_003550326.1" /db_xref="GI:294057982" /db_xref="GeneID:8960311" /translation="MKRGDIVAVSLQGDYGKPRPALIVQSNLLAELESLVICPITSAV RDAAFRITVEPDNANGLRVLSQVMVDKLSTLPRSKISKPFGRLDDERMKAVDRALLLV VGLI" gene complement(4574..4795) /locus_tag="SJA_P3-00080" /db_xref="GeneID:8960312" CDS complement(4574..4795) /locus_tag="SJA_P3-00080" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003550327.1" /db_xref="GI:294057983" /db_xref="GeneID:8960312" /translation="MAAIKQRADKVDRHRQRMRAAGFRPVQFWVPDTRGADFAERVRQ QCLKLKGDPAELDALRFVEEAAAQVEGWQ" repeat_region 5214..5266 /note="5239..5266,5214..5241" /rpt_type=direct /rpt_unit_range=5214..5241 /rpt_unit_range=5239..5266 protein_bind complement(5290..5298) /note="dnaA_Box mis1" /bound_moiety="dnaA" ORIGIN 1 gtgacagata cgcgcacctt gcccgccacc aagcctcagc ctagccgatg ggtccagact 61 gaccgtgcat cgcatgaggc ttgggcgcgc ttaagcgcat caaaccccaa ggctggggcc 121 ttactacatc tgcttgccgc tcgggtcgga gataataatg ctgttgtagt aagtcacaag 181 acattagcag aattgctagg ggttagatca attacaacta ttaagacagc aataactgca 241 cttgtttctg gaaattggat tgaagtcagg cggattggtg aaaacggcac tgtcaacgca 301 tatgtgttga acgatagagt tgtttggtct ggaccacgtg aagggctaag atacagccta 361 ttttctgcaa ctgtcgtcgt ctccgacagc gaacagccgg accgcgatac tttgggcaag 421 caagaaccac tacgccgcct tcccccgata ggtgagcgtc agctaccgca cggcgacgga 481 cttccccctc cttcgcaacc gttcctagat ggaattgagc ctgatctgcc cgccaccgaa 541 cagcagaacc tcgatccggc gatgcaagag gaactatccc agctcgtcat cggcctagga 601 aacaggctcc gcgcgcccga tgcctctccc cctgacgatg caaccgatat atagatacta 661 tacaggccga cttaacagcg agtgacatca tgggtatcac cctaagagaa gcatccgaaa 721 aggtcggtgt cacccgccaa acgctcatga aggcgatcaa gacaggccgg gtttccgccg 781 aaaaatccga taacggcgaa tggcgcattg aacctgtcga gctatttcgt gtctggcccc 841 ctgtaaatgg ggtgcagcaa cctttacagc ctaacataac aggcagtgac acccccggtt 901 tacaggctga aaacaggctg ttgcgggagc aggttgccga actgcgtgaa gaacggaacg 961 cttggcggga gcaagcccaa cggctcgccc tcaccgatca gcgcgctgtc tcgcagccca 1021 gctcccgccc cggcttctgg tcgcgcctgt tcggccgcca gggcgacagc cctagcggat 1081 agtgatgaat ccattgagaa aattgttgcg gtttcgcaac atattagaaa aaactcagtt 1141 gacctcaaaa tatttcttgt attttttagt ttagcagtta cccccccccc cccccccccc 1201 cgctagggtc gcgaaaatta gtcatgtttc gtgtttactt agggggttta ttaatgaaga 1261 agattattac ttgcgccgtt cttgcgtctg ccgctcttgc tacgcctgct ttcgcgcagg 1321 atgaagccga caagggtatg tatttccaac ttcgcaccgg cgttgctgac ctcaacaatc 1381 ccgatttcgc catcatcgac acatggtccg agccgaacaa tcgcctcgac acgaagctca 1441 acaccaagtc cgctgcaacc tttggcggtg agctgggcta tgatttcggc ggcgtccgcg 1501 tcggcctcga actggcctat cagcgcaaca aggtgaaggg catcacgctc aagagcctga 1561 acggcaccgc gatcacggcc gaggacctct ccgatgttgt cgaaggtctt ggcgaactcg 1621 acattatcag cgtcgatgat ttggacggcg ttgacattaa cggcaccacg atcagcgcga 1681 ccaacggctc cgtcgctaag ctgcgccagc tcgccgtgat ggcgaatgtc acctacgata 1741 ttccgctcgg cggcaacacg ttcaagccct atgtcggcgt gggcctcggc gcggtcggct 1801 cacacctcaa ggcgctgggc gaggatgacg gctcggttcg cttcgcatgg cagctccgcg 1861 ccggtgcagc cgtgaaggtg acgaagggca tcgatctgac cgccgattac acctatcgtc 1921 agaccggcag cggcaagctg aacttcgggg acgaggacgt ggaatatcgc ctcggtaaaa 1981 ccaaggcttc gctgtttcag gtcggtctgc gctttacgct ctgatccgcg accctctcaa 2041 atcgcgataa gtgagaaacc ctcctgctct gcgggagggt tttttcttgg ctatacgatc 2101 cgatcatatg cgaccgaatc atatatgatc ggatcgtata tcgccgtcac aagctcatgc 2161 cccggtcgcg ttgcaggatc agctcccgct caccgatgag ctgacccacg gcgcgcgcca 2221 ttttcggttc acgctggatc tgctcgatat aaagatcctt ggtgtgctgg ttggccccgt 2281 tataggcgtc caccgccttg cggagcgctt ccggggtcgc cttccagtcg ctgttatggt 2341 cgccatagcc atgcgcgccc gcctcgcgct tcccggcgat ggtattgaac ttctcggcca 2401 cccgctcgcg ttcccgcacc tgctggcgct cctgcgcttc ctgacgggcg cgatcggcgg 2461 ctagacgctc ctgcgcttcg cgggcgagtt gcacctcggc cgcctcgcgc cgatcgcgct 2521 cgaccgcacc gctcaagctg gccgcaacat cgtgcagcct gcccgcgatc cgctgcccca 2581 tgtctcgcag ccattccgtc ccgcgctcga tatactggcg caggccggcc cgctcgacga 2641 cgccggcgtt gtgctgacct accgccgtca ccggctcata ggcccgccct tcccgcgcgg 2701 ccacctgctc ggcccgccgc tccatcgccg tcgcactcgg ccccatatgc acggtgggtt 2761 cctgctcgat cccctgccgc tggtgactgc gatggtccac ccggtcgggg acgttcgcca 2821 gttccagcgc ccgattctgc atctcggccc atcgttcccg ccaccgctcg acctcgccgc 2881 tctgcttctg gtccagctcg cgcgtctttt cccccagccc ctcagggcca aggcggcgcg 2941 tcgtcgtcaa caggtgggca tggtgattgc gctggtcgcc ctcgcgacca ggtgcatgga 3001 tcgacacgtc caccgccacc ccatgccgct cgctgatttc ccgcgcgagg cccaaggcca 3061 gctcccggcg ctcgtcggcc gacagctcga cgggcagcgc gatttcatat tcccgcgcca 3121 cggtcgcgtt cttgcgcgtc tccgccagct cggccgcgtt ccatagccgc tcgcggtcgg 3181 ccgcccactc cggcgcgtcg gtcggcaaca tcagctcgct atgctcgacg ccctgcttgc 3241 gggtgtaatc gtggacgagg ccggtgcgct cgtccgtgat ttcgacgccc gcacgatagg 3301 ctgccgccgc cgtcgcgctg cgaccggcgg aacggcctat cgccttcacc gcaagatgga 3361 aactcgccat cgccgcgccc taccttgcca tgcgggagca tggcgcgggc gatagcccgc 3421 tggggtggag gggtatcccc tcccgcacgc aaacgcaagt ttgcataagt gcgcccttcc 3481 tctctttcgt tcagtcgggt ccggtgctat caatatcact cagcgaaagg attgtgcatg 3541 gccgctccga cgccagaggc tatcgaaaac gcccgccgca aggtcgaaca ggccaaggcc 3601 cggttgcagg cattggaagc gcgcgccgcc accctgaacc gcaaacagga cgcccgccgc 3661 aagatcatcc tcggcggcct gctcctcgat gccgcgatga aagaccccgc atgggaatcc 3721 cgcctcaatg acctgatggg ccggatcagc cgcgatcagg atcgcaaggc gttcgatggc 3781 tggaccttca agggcggccc cgccgatgcc tgacccgtta gaccccgctg agttcgacgc 3841 cccgccccct gccgatcccg gcgcggatta tcgcgtcctg ctcgatgcga tgcggcaggc 3901 cggggccgat gggatcgcgc agcagtcggc cgcgctggtc cagcggatcg agcaggacgc 3961 ccgccagcgc ctcgaatggg ggcaacggat gggaacggcg gtcgatgatc tccagcgcgt 4021 ggcggggcag ctccagcggg tcagtgccgg gatatggtgg gaccggctga aggaatggct 4081 ctcggccgcc ctgatcgggc tgggcctgat cttcgccgcg gccctcgcct accagtgggc 4141 gaaggaaccc aagattgaac agcggctata cggctgcacc gcacgatggg acgccaaaac 4201 aggcaagtgc aaaggcgact gggtgccgtt gcaggcaagg gaatgaccga cgcccttcaa 4261 atcagcccga cgacaaggag caaggcgcgg tccacggcct tcatccgctc atcgtcaagc 4321 cgcccgaaag gcttgctgat tttcgagcgg ggcagggtcg agagcttgtc caccatcacc 4381 tgcgagagca cacgcaaccc attggcgttg tccggctcga cggtgatgcg aaaggcagcg 4441 tcgcgcacgg cgctggtgat cgggcagatc acgaggcttt ccagctcggc caaaagattc 4501 gactgcacaa tgagggccgg gcgaggcttg ccgtagtcac cttgcaacga aaccgcgaca 4561 atatcgcctc gcttcactgc cagccctcga cctgcgccgc cgcttcctcg acaaaccgca 4621 gcgcgtccag ctccgccggg tcgcccttca acttcaagca ttgctggcgc acacgctccg 4681 cgaagtcagc cccgcgcgtg tcgggaaccc agaattggac gggccgaaac cccgccgcac 4741 gcatccgctg gcggtgccga tctaccttgt cagccctttg cttgatcgcg gccatgtgaa 4801 tctccatagg tatcatgcta agttacatga tacctctttg actgctcccc cgcaagttcc 4861 ttcactccga tttgcctctg gcgtcccgca ggggcgccgc cgagcctttg gatggcacaa 4921 aagccacccc caagcgcctc cctgcgtcct acgggccgga aatcgcctcc tacaccccct 4981 gatagcccgt aggaactttg ccgtaggaac tgccctttgc gggaatatgc gaccgtatga 5041 gctgggcgtc tccaacccat aacgcgcgcc gcgattagcg gcgctcattg ttcacttttt 5101 gttcctatct aaaggggctg cttcgccagc gcttaggtcc gcgcttgcac cccctttaga 5161 tcatatagaa gggcgagatt ttttattgcg taatttcaat gtgttggcgg gggggggtag 5221 ccagtagctg attggctagg ggtagccagt agctgattgg ctagggtctg tcgattttca 5281 ccaatttatt gtcgataatt gacgttgatt tttgataatt ttctggcgat aatcggacat 5341 agattgactg cccctagcca atctatgtcc gatttctcga cactggagtc acacccct //