LOCUS NC_013965 6359 bp DNA circular BCT 29-MAR-2010 DEFINITION Haloferax volcanii DS2 plasmid pHV2, complete sequence. ACCESSION NC_013965 VERSION NC_013965.1 GI:292494315 DBLINK Project:46845 KEYWORDS . SOURCE Haloferax volcanii DS2 ORGANISM Haloferax volcanii DS2 Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloferax. REFERENCE 1 (bases 1 to 6359) AUTHORS Hartman,A.L., Norais,C., Badger,J.H., Delmas,S., Haldenby,S., Madupu,R., Robinson,J., Khouri,H., Ren,Q., Lowe,T.M., Maupin-Furlow,J., Pohlschroder,M., Daniels,C., Pfeiffer,F., Allers,T. and Eisen,J.A. TITLE The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon JOURNAL PLoS ONE 5 (3), E9605 (2010) PUBMED 20333302 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6359) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-MAR-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6359) AUTHORS Madupu,R.M., Hartman,A.L., Norais,C., Badger,J.A., Delma,S., Haldenby,S., Khouri,H., Ren,Q., Lowe,T., Robinson,J., Furlow,J.M., Pohlschroder,M., Pfeiffer,T., Allers,T., Daniels,C. and Eisen,J.A. TITLE Direct Submission JOURNAL Submitted (04-FEB-2010) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6359 /organism="Haloferax volcanii DS2" /mol_type="genomic DNA" /strain="DS2" /db_xref="taxon:309800" /plasmid="pHV2" /note="type strain of Haloferax volcanii" gene complement(3..284) /locus_tag="HVO_D0001" /note="conserved hypothetical protein (nonfunctional)" /pseudo /db_xref="GeneID:8919386" gene 347..490 /locus_tag="HVO_D0002" /db_xref="GeneID:8919383" CDS 347..490 /locus_tag="HVO_D0002" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003533458.1" /db_xref="GI:292494316" /db_xref="GeneID:8919383" /translation="MSATDTRIPVSKDVRRDLRVLKAREGRRSYDETIAVVLDAYLSE KVD" gene 702..3347 /locus_tag="HVO_D0003" /db_xref="GeneID:8919381" CDS 702..3347 /locus_tag="HVO_D0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003533459.1" /db_xref="GI:292494317" /db_xref="GeneID:8919381" /translation="MYDTDDTTAHEPTEKRSLRFATDLEADVSLTDWTALRVHRVIFD ETESQFALLEALQTAADGVDILEFEHRLSSCGFDVDGSVVKLARRAVAGERRALWDLI RYARRLGHDEMGQPQSALEDALAFTRLLGYSNPQQTIAIGLNAAFRETRRDQADEIIE YVLTLSESVDVVLGGSEIDRVYLHNYYGDILPSSVTNPCNDTRNDYSITTLVDVVGTD GLAVEILRTVGETESGHMAYSALQSAFSQYDRTTVSRRLNEKLIEYGLCEKYGARGNL RIEILDKGALYLEELAKEKERQKALQDYVTNTPKPNHNTRVITDRPRGGREDDHRPTA EGEASTTPDGRVRLPRYHGVDYLSYAETVSAAKTPPKKGVSVTNYPVEPKSDRGEAGW GYLEDENTLVVSAEYDSAMSHVVMIARALLDPKTFDQVLTEDRLAELDGLIEDGTYVR GSRNLGWLADSVDSAGEYVDVLEDARDELLDMTRSLAHEDYECETSEYLSRITKTAMG LAGTAFHVLDLLDIDVVWEARLPDYNRHPERYGEDNAELLATTLAKNAPIAATYGNHV VRRLLFEDRDEKRRQSFDPVVDASNPYANLIASISVVGDFGNRADHVAGVIEDRLSNP GEIHEDAPEIALKVPVVVEHGPSTVARVTRAMCRAKGLDATRDAIRLFSGFARTPYDV AHAIGRGLSQEATPREIRSSEVRLSLASLPSKRLLEDATPTVRAMISTLLATNLSLSK TELAEKAGISTQSVRNHLPTLVAMGLVDETEGQCRLNLSFTDEQERHKRILPSFMLTE SFTRDVLFETLEALDELTEEVIEIWVQCGPNGLPDIDRLHTMYDWVDWVRPLLSSLTE ERDETVQTLSIGPEIAQQPLTEAGS" gene 3541..4110 /locus_tag="HVO_D0004" /db_xref="GeneID:8919385" CDS 3541..4110 /locus_tag="HVO_D0004" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003533460.1" /db_xref="GI:292494318" /db_xref="GeneID:8919385" /translation="MSSKMNYGRFGRCTATAKSTGKRCGRPAIGPHGKCGFHGGKSSG PKNTEYLEENDFARGNSGGGAPKLNTNAVQSGAWVDLEKLEARLSEKERDDVERTTEA YLKRATADLPEDELQAKAREIALLQILRFRATGDVFTRGFAWEEPTSVDVAGESYEYE STRVNPSVGRGLDLSARWRRLMSEIEAWP" gene 4859..5476 /locus_tag="HVO_D0005" /db_xref="GeneID:8919384" CDS 4859..5476 /locus_tag="HVO_D0005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003533461.1" /db_xref="GI:292494319" /db_xref="GeneID:8919384" /translation="MPREHGDSGTFVETVSLEDVLGVFDVVDGPVILSADVADELDCS RETARRKLQALYERGDLERRKVSRRVVYWEADVTAETMGYDETARDAPQDAGDSIEGT RTSTASSAAESTIDIDAILSDIEVPGFGEKAEARKTAVRAVLEYLVDHKEAESKTLKE IAWEADSETYANARSLWSNAVVKALHQIPEVSSAGERQSGWSIDE" gene 5469..5891 /locus_tag="HVO_D0006" /db_xref="GeneID:8919382" CDS 5469..5891 /locus_tag="HVO_D0006" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003533462.1" /db_xref="GI:292494320" /db_xref="GeneID:8919382" /translation="MSDDGDDVDPTNPRPKGHYGRFRDSPWYYVNDELAQTFILGPAT DAEPGDDWILSFTGEGATETDRERVCVRLTPRALHELYIETKDLSPDARQAGHTAECD LCGESVPLEKAVPNKREEPVHKRCYVDAYGGPVWMEDY" ORIGIN 1 tcgacggtgt cggtgatccc gagatatagg agagcgaacg accacgacag gacgtttagc 61 gtatgctctt tcccgtctaa atcgccgtcc tcgaaggctt ccgttctaag gtcctcgtcg 121 agttccgaaa ccaggagcgg catatcatgt agggcttcat ggagccgctc gactatcgct 181 cgccggcgtt cgtatcctgc ctgtttgcta tactccttcg gtttttggag ataccggcgg 241 tcggccggtg acaaaatccc tcttgccctt tcgtcaagac tcatgcttta ccaatcacat 301 cttcatgtcc gtaatgcttt atacgttgtg ccctaaagcg ggatatatgt ctgccacgga 361 cacgcggatt ccggtgtcga aggatgtgcg gcgcgacctc cgggttctca aggcgcggga 421 aggccgacgg tcatacgatg agacaattgc ggtggtgctt gacgcatatc tctctgagaa 481 ggtggattaa taaactatag tcgtgactag cgaactagtt gaatcaaacg acgccgggag 541 cacacgagtc tgccaggact tcgctcctat cggcgtcgaa ggatgcttac gcggacacgg 601 cgggcgggtg gcccgttgtc ctaactcaac caatgtggtt ggggcttatg ggattatcgg 661 attttcaccc ggcgttagtg ttcgcacaaa agcgacacta aatgtacgat acggacgata 721 cgacggcaca cgaaccgact gagaagcgaa gccttcgctt tgcgactgac ctcgaggcgg 781 acgtctcgct tacagactgg accgcccttc gggttcatcg agtaatcttc gacgagacag 841 agagtcaatt tgcgcttctc gaggcactac aaacagcggc ggacggtgtc gacatactcg 901 agtttgaaca ccgactgtcg agttgtgggt ttgacgtcga tgggtcagtc gtgaaacttg 961 cacgacgagc tgtcgccggc gagagacggg ctctgtggga cttgattcgg tatgcgcgac 1021 ggttgggaca tgatgagatg ggacagccac agagcgcctt agaggacgct ctcgcgttca 1081 ctcgtctatt gggctatagc aaccctcaac agacgatagc aatcggtctc aatgcggctt 1141 tcagagagac gcggcgcgac caggccgacg agattatcga gtacgttcta acgctgtctg 1201 agagcgtcga cgtggtcctt ggtgggtcag agatcgaccg agtgtacttg cacaactact 1261 acggcgatat tctcccatcg agtgttacga atccgtgcaa cgacacccgt aatgattact 1321 ccattacgac gctcgtcgac gtggttggga cggacggact tgctgtcgag atacttcgga 1381 cggtaggtga gactgaaagc ggacacatgg cctacagcgc cctacaatcg gcgttcagtc 1441 agtacgatag gaccacggtc tcgcggcgat tgaacgagaa gctaatcgag tatggtcttt 1501 gtgagaagta cggcgctcgc ggaaacctac gaatcgagat tctcgacaaa ggagcgttgt 1561 acctcgaaga attagccaaa gagaaagagc gacaaaaggc ccttcaggac tacgttacga 1621 acaccccaaa accaaaccac aatacccgtg taatcacgga ccgccctcgg ggagggaggg 1681 aggacgacca ccgaccgacc gccgaaggtg aggcgtcgac gacgccggac ggacgggttc 1741 gcttacctcg gtatcacggt gtggactatc tttcgtacgc agagacggtc tcagcggcga 1801 agacaccgcc gaagaaaggc gttagtgtga caaactaccc tgtcgaaccc aaatctgacc 1861 ggggagaagc cgggtggggc taccttgagg acgagaatac gctcgtcgtc tctgcagagt 1921 acgactctgc catgtctcat gtggtgatga ttgcacgagc gttactcgat cctaagacgt 1981 tcgaccaggt ccttaccgag gaccgtctcg cggaacttga tggactaatc gaagatggga 2041 cgtacgttcg tgggtctcga aacctcgggt ggttggctga ctctgtcgac tcggcgggtg 2101 agtacgtcga cgtcctcgag gacgcgagag acgagctact cgacatgacg cggtcacttg 2161 cacatgagga ctacgagtgt gagacgtccg agtacctgag tcgaatcacg aaaacggcga 2221 tgggtctcgc gggaaccgcg tttcacgtcc tcgatttact cgatattgac gtcgtttggg 2281 aggctcgctt acccgactac aaccgacacc cggagcgata cggggaggac aatgccgagt 2341 tgttagcaac gacgcttgcg aagaacgcgc cgattgcggc gacgtacggg aaccacgtag 2401 tccggcgact gttgtttgaa gaccgagacg agaagcgacg tcagtcgttc gaccctgtcg 2461 tcgacgcgag caatccgtat gcgaacctga ttgcgtcgat ctcggtggtt ggtgacttcg 2521 ggaatcgggc ggaccacgtc gccggcgtaa tagaagaccg actgtcgaac cctggggaga 2581 ttcacgagga cgcgccggag attgcgctca aagtccctgt ggtcgtcgag catggtccga 2641 gtacggttgc acgagtaaca cgggcaatgt gtcgggcgaa aggtctcgac gcgacgagag 2701 acgcgatacg gctattctct gggtttgcac ggacaccgta cgacgtagcc cacgcaatcg 2761 ggcgagggtt gtctcaagaa gcgacaccga gagagattcg gagtagcgaa gtacggcttt 2821 cactcgcgag tctcccgtcg aagcgtctct tagaggacgc aacccccacg gttcgggcga 2881 tgattagtac gttgctcgcg acgaatctga gccttagcaa gacagagtta gccgagaaag 2941 cgggaatctc gacgcagtcg gttcggaacc acttaccgac acttgtagca atggggttag 3001 tcgacgagac cgagggtcag tgccgactga acctttcgtt cacagacgag caagaacgcc 3061 acaagcggat tcttccatcg ttcatgctga ccgagtcgtt cactcgagac gtcctctttg 3121 agacgctaga agcgcttgat gagttgaccg aggaggtaat cgagatatgg gtacaatgcg 3181 gacctaacgg gctaccggac atcgaccgtc tccatacgat gtacgactgg gtagactggg 3241 tacgtccctt actgtcgagt ctaaccgaag aacgagacga gacggttcag acgctgtcta 3301 ttgggccgga gattgcacag caacccctca cggaggcagg ttcgtgattg aactaacctt 3361 tggtaatatg ttcgtgatat gcgttgtatt cgggtatctc gtaatctcgt ggtatctctc 3421 gagacagtac gttcatgatt agagtagggt cgacgaactc tgaacctatg aatcgcggtc 3481 ggacaacaac cccccatgga atcttgaggc aagagacaaa cacggaccac atgaaccccc 3541 atgagtagta agatgaatta cggtcggttc gggcgatgta ccgcgacagc taagagtacg 3601 ggaaagcggt gtggtcgacc agcaatcgga ccacatggga agtgtgggtt tcacgggggc 3661 aagagtagtg gaccgaagaa taccgagtac ctggaggaaa acgactttgc gagaggtaac 3721 tcgggtgggg gagcgccgaa gctcaacacg aacgcggttc agtctggtgc gtgggtcgac 3781 ctcgagaagc tcgaggcgcg actctccgag aaagaacgcg acgacgtcga gcgtacgacc 3841 gaggcatacc tcaagcgggc gacagcggac cttcccgagg acgagctaca agcaaaagcg 3901 cgagagattg cattactcca aattctccgg tttcgagcga ctggtgacgt ctttactcgg 3961 gggtttgcgt gggaagaacc gacgtccgtc gacgtcgcgg gcgagagtta cgagtatgag 4021 tcgactagag taaacccctc tgtcggtcgt gggttagact tgtccgcccg gtggcgacgt 4081 ctcatgtccg agatcgaagc gtggccttag ttggtgtctt cttgctggtc gatgtaccct 4141 acaagttgaa tcagaaagtt accgatttga atcgctatct caagtgtttc aatttctgtc 4201 attgcatact aagagtagtc acggttaggc gcgtcctcga aacaccccat ggaagaaatt 4261 gctaatcggg ttgtcggtga gtgacaacga gggctagcaa tcggtactaa tcgcaagact 4321 gcggtacgat acgtactaat caatacgtac gtggatacga aatgcggcgg ttctcaccgg 4381 aagaatagta cgaatactga gaagtgagga cgcattttcg gaacgtcttc aggcgagcgc 4441 gcgcccgaag tgccgactac tcgtaacggc aggctggtcg gtgggacgcc gtcgacgtct 4501 cgccgtcgag gacttcagcc ccacacacgg gacaccggac gtagttgtgc ccagtcggtt 4561 cgccgtagcg gtcgtactcg gtaaacggtc cttcccagtc gggagtgtcg tcgatgacct 4621 cggcgtcgtc gccggcgatg atgatagcgg tactgtcttg gcttcgggtt tcgttggtcg 4681 acatggtctt tcagtctcca tagagaaagg ccggtctcgg tgtcctacca ccgggacgtt 4741 tcaacacgtc cgaggatacc gtctttctct accatattgt attagccaca tggacataag 4801 tctttaccat attggttatg ccaaaaggta taatcgggcg gggaacgtac tgaatcgtat 4861 gccgagggaa catggcgaca gcgggacgtt tgtcgagacg gttagtttag aggacgtctt 4921 aggagtgttc gacgtggtcg acggaccggt aatcttgtcg gcggacgtcg cagacgagtt 4981 agattgctcg cgagagacag ctcgtcggaa actacaggca ttatacgaac gcggcgacct 5041 cgagcgccgg aaagtctcac gacgagtcgt ctattgggaa gccgacgtta cagcggaaac 5101 gatggggtac gacgagacgg cgagagacgc gccacaagat gccggtgatt ctatcgaggg 5161 tactcggacg tcgacggcgt caagcgccgc agaaagcaca atagacattg acgcgattct 5221 ctctgatatt gaggtacctg ggtttggaga gaaagccgag gcgcgaaaga cggcggttcg 5281 ggcggtcctc gagtacctag tcgaccacaa agaggcggag agtaagactc tcaaagagat 5341 tgcgtgggaa gccgattcgg agacgtacgc aaatgcacga agtctgtggt cgaacgcggt 5401 agtcaaagca ctacaccaaa ttcccgaggt atcgagcgcc ggcgagcgac aaagtgggtg 5461 gtctatagat gagtgacgac ggcgacgacg tcgacccaac caacccacga ccgaaaggtc 5521 actatggacg gtttcgagat tcaccgtggt actacgtcaa tgacgagtta gcacagacat 5581 tcatcctcgg accagcaacc gacgcggaac cgggcgacga ctggatactg tcgtttacgg 5641 gggaaggtgc aaccgagacg gaccgcgaaa gagtgtgtgt ccgactgacg ccgcgagcgt 5701 tgcacgagct atacatcgag acgaaagact tgtcgccgga cgctcgacag gcgggacaca 5761 ccgccgagtg tgacctttgc ggggaaagcg tcccgctgga gaaggccgtc ccgaacaaac 5821 gcgaggagcc ggttcacaaa cgctgttatg tcgacgccta cggcgggccg gtatggatgg 5881 aagattattg agccgggttt aaccaacagt cggacgtccc gataggtcgg tgttggttaa 5941 gagcgtggtt acaccgggag taagcacggc tccagtcgtc gagatataca aggagagacg 6001 ccgaggacgt caaacgacgc ggtcggcccc ccaggggtta ctcgtcggcg ttatctcgaa 6061 gctctaagtt cgggaacgct ccgactttgt ccgtattccc cgactcccaa gcttctttga 6121 ttcgagccat ttgttcctcg ccggttaggt gggagagttc gcccgattcg agtagttggt 6181 tcacctcggg gtaactgagt tcgtccggct cgcgctcccg taactcgtcg agcggctcgc 6241 cccgttttac attaacctcg acctcgacct cctcgaccga atacccgcgc tggaggtatg 6301 cctgtctaac accgctcgcg gcaatcccct cgaaagcgtc ctttgccaaa tcggacggt //