LOCUS       NC_013965               6359 bp    DNA     circular BCT 29-MAR-2010
DEFINITION  Haloferax volcanii DS2 plasmid pHV2, complete sequence.
ACCESSION   NC_013965
VERSION     NC_013965.1  GI:292494315
DBLINK      Project:46845
KEYWORDS    .
SOURCE      Haloferax volcanii DS2
  ORGANISM  Haloferax volcanii DS2
            Archaea; Euryarchaeota; Halobacteria; Halobacteriales;
            Halobacteriaceae; Haloferax.
REFERENCE   1  (bases 1 to 6359)
  AUTHORS   Hartman,A.L., Norais,C., Badger,J.H., Delmas,S., Haldenby,S.,
            Madupu,R., Robinson,J., Khouri,H., Ren,Q., Lowe,T.M.,
            Maupin-Furlow,J., Pohlschroder,M., Daniels,C., Pfeiffer,F.,
            Allers,T. and Eisen,J.A.
  TITLE     The Complete Genome Sequence of Haloferax volcanii DS2, a Model
            Archaeon
  JOURNAL   PLoS ONE 5 (3), E9605 (2010)
   PUBMED   20333302
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6359)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2010) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 6359)
  AUTHORS   Madupu,R.M., Hartman,A.L., Norais,C., Badger,J.A., Delma,S.,
            Haldenby,S., Khouri,H., Ren,Q., Lowe,T., Robinson,J., Furlow,J.M.,
            Pohlschroder,M., Pfeiffer,T., Allers,T., Daniels,C. and Eisen,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2010) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6359
                     /organism="Haloferax volcanii DS2"
                     /mol_type="genomic DNA"
                     /strain="DS2"
                     /db_xref="taxon:309800"
                     /plasmid="pHV2"
                     /note="type strain of Haloferax volcanii"
     gene            complement(3..284)
                     /locus_tag="HVO_D0001"
                     /note="conserved hypothetical protein (nonfunctional)"
                     /pseudo
                     /db_xref="GeneID:8919386"
     gene            347..490
                     /locus_tag="HVO_D0002"
                     /db_xref="GeneID:8919383"
     CDS             347..490
                     /locus_tag="HVO_D0002"
                     /note="identified by glimmer; putative"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003533458.1"
                     /db_xref="GI:292494316"
                     /db_xref="GeneID:8919383"
                     /translation="MSATDTRIPVSKDVRRDLRVLKAREGRRSYDETIAVVLDAYLSE
                     KVD"
     gene            702..3347
                     /locus_tag="HVO_D0003"
                     /db_xref="GeneID:8919381"
     CDS             702..3347
                     /locus_tag="HVO_D0003"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003533459.1"
                     /db_xref="GI:292494317"
                     /db_xref="GeneID:8919381"
                     /translation="MYDTDDTTAHEPTEKRSLRFATDLEADVSLTDWTALRVHRVIFD
                     ETESQFALLEALQTAADGVDILEFEHRLSSCGFDVDGSVVKLARRAVAGERRALWDLI
                     RYARRLGHDEMGQPQSALEDALAFTRLLGYSNPQQTIAIGLNAAFRETRRDQADEIIE
                     YVLTLSESVDVVLGGSEIDRVYLHNYYGDILPSSVTNPCNDTRNDYSITTLVDVVGTD
                     GLAVEILRTVGETESGHMAYSALQSAFSQYDRTTVSRRLNEKLIEYGLCEKYGARGNL
                     RIEILDKGALYLEELAKEKERQKALQDYVTNTPKPNHNTRVITDRPRGGREDDHRPTA
                     EGEASTTPDGRVRLPRYHGVDYLSYAETVSAAKTPPKKGVSVTNYPVEPKSDRGEAGW
                     GYLEDENTLVVSAEYDSAMSHVVMIARALLDPKTFDQVLTEDRLAELDGLIEDGTYVR
                     GSRNLGWLADSVDSAGEYVDVLEDARDELLDMTRSLAHEDYECETSEYLSRITKTAMG
                     LAGTAFHVLDLLDIDVVWEARLPDYNRHPERYGEDNAELLATTLAKNAPIAATYGNHV
                     VRRLLFEDRDEKRRQSFDPVVDASNPYANLIASISVVGDFGNRADHVAGVIEDRLSNP
                     GEIHEDAPEIALKVPVVVEHGPSTVARVTRAMCRAKGLDATRDAIRLFSGFARTPYDV
                     AHAIGRGLSQEATPREIRSSEVRLSLASLPSKRLLEDATPTVRAMISTLLATNLSLSK
                     TELAEKAGISTQSVRNHLPTLVAMGLVDETEGQCRLNLSFTDEQERHKRILPSFMLTE
                     SFTRDVLFETLEALDELTEEVIEIWVQCGPNGLPDIDRLHTMYDWVDWVRPLLSSLTE
                     ERDETVQTLSIGPEIAQQPLTEAGS"
     gene            3541..4110
                     /locus_tag="HVO_D0004"
                     /db_xref="GeneID:8919385"
     CDS             3541..4110
                     /locus_tag="HVO_D0004"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003533460.1"
                     /db_xref="GI:292494318"
                     /db_xref="GeneID:8919385"
                     /translation="MSSKMNYGRFGRCTATAKSTGKRCGRPAIGPHGKCGFHGGKSSG
                     PKNTEYLEENDFARGNSGGGAPKLNTNAVQSGAWVDLEKLEARLSEKERDDVERTTEA
                     YLKRATADLPEDELQAKAREIALLQILRFRATGDVFTRGFAWEEPTSVDVAGESYEYE
                     STRVNPSVGRGLDLSARWRRLMSEIEAWP"
     gene            4859..5476
                     /locus_tag="HVO_D0005"
                     /db_xref="GeneID:8919384"
     CDS             4859..5476
                     /locus_tag="HVO_D0005"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003533461.1"
                     /db_xref="GI:292494319"
                     /db_xref="GeneID:8919384"
                     /translation="MPREHGDSGTFVETVSLEDVLGVFDVVDGPVILSADVADELDCS
                     RETARRKLQALYERGDLERRKVSRRVVYWEADVTAETMGYDETARDAPQDAGDSIEGT
                     RTSTASSAAESTIDIDAILSDIEVPGFGEKAEARKTAVRAVLEYLVDHKEAESKTLKE
                     IAWEADSETYANARSLWSNAVVKALHQIPEVSSAGERQSGWSIDE"
     gene            5469..5891
                     /locus_tag="HVO_D0006"
                     /db_xref="GeneID:8919382"
     CDS             5469..5891
                     /locus_tag="HVO_D0006"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003533462.1"
                     /db_xref="GI:292494320"
                     /db_xref="GeneID:8919382"
                     /translation="MSDDGDDVDPTNPRPKGHYGRFRDSPWYYVNDELAQTFILGPAT
                     DAEPGDDWILSFTGEGATETDRERVCVRLTPRALHELYIETKDLSPDARQAGHTAECD
                     LCGESVPLEKAVPNKREEPVHKRCYVDAYGGPVWMEDY"
ORIGIN      
        1 tcgacggtgt cggtgatccc gagatatagg agagcgaacg accacgacag gacgtttagc
       61 gtatgctctt tcccgtctaa atcgccgtcc tcgaaggctt ccgttctaag gtcctcgtcg
      121 agttccgaaa ccaggagcgg catatcatgt agggcttcat ggagccgctc gactatcgct
      181 cgccggcgtt cgtatcctgc ctgtttgcta tactccttcg gtttttggag ataccggcgg
      241 tcggccggtg acaaaatccc tcttgccctt tcgtcaagac tcatgcttta ccaatcacat
      301 cttcatgtcc gtaatgcttt atacgttgtg ccctaaagcg ggatatatgt ctgccacgga
      361 cacgcggatt ccggtgtcga aggatgtgcg gcgcgacctc cgggttctca aggcgcggga
      421 aggccgacgg tcatacgatg agacaattgc ggtggtgctt gacgcatatc tctctgagaa
      481 ggtggattaa taaactatag tcgtgactag cgaactagtt gaatcaaacg acgccgggag
      541 cacacgagtc tgccaggact tcgctcctat cggcgtcgaa ggatgcttac gcggacacgg
      601 cgggcgggtg gcccgttgtc ctaactcaac caatgtggtt ggggcttatg ggattatcgg
      661 attttcaccc ggcgttagtg ttcgcacaaa agcgacacta aatgtacgat acggacgata
      721 cgacggcaca cgaaccgact gagaagcgaa gccttcgctt tgcgactgac ctcgaggcgg
      781 acgtctcgct tacagactgg accgcccttc gggttcatcg agtaatcttc gacgagacag
      841 agagtcaatt tgcgcttctc gaggcactac aaacagcggc ggacggtgtc gacatactcg
      901 agtttgaaca ccgactgtcg agttgtgggt ttgacgtcga tgggtcagtc gtgaaacttg
      961 cacgacgagc tgtcgccggc gagagacggg ctctgtggga cttgattcgg tatgcgcgac
     1021 ggttgggaca tgatgagatg ggacagccac agagcgcctt agaggacgct ctcgcgttca
     1081 ctcgtctatt gggctatagc aaccctcaac agacgatagc aatcggtctc aatgcggctt
     1141 tcagagagac gcggcgcgac caggccgacg agattatcga gtacgttcta acgctgtctg
     1201 agagcgtcga cgtggtcctt ggtgggtcag agatcgaccg agtgtacttg cacaactact
     1261 acggcgatat tctcccatcg agtgttacga atccgtgcaa cgacacccgt aatgattact
     1321 ccattacgac gctcgtcgac gtggttggga cggacggact tgctgtcgag atacttcgga
     1381 cggtaggtga gactgaaagc ggacacatgg cctacagcgc cctacaatcg gcgttcagtc
     1441 agtacgatag gaccacggtc tcgcggcgat tgaacgagaa gctaatcgag tatggtcttt
     1501 gtgagaagta cggcgctcgc ggaaacctac gaatcgagat tctcgacaaa ggagcgttgt
     1561 acctcgaaga attagccaaa gagaaagagc gacaaaaggc ccttcaggac tacgttacga
     1621 acaccccaaa accaaaccac aatacccgtg taatcacgga ccgccctcgg ggagggaggg
     1681 aggacgacca ccgaccgacc gccgaaggtg aggcgtcgac gacgccggac ggacgggttc
     1741 gcttacctcg gtatcacggt gtggactatc tttcgtacgc agagacggtc tcagcggcga
     1801 agacaccgcc gaagaaaggc gttagtgtga caaactaccc tgtcgaaccc aaatctgacc
     1861 ggggagaagc cgggtggggc taccttgagg acgagaatac gctcgtcgtc tctgcagagt
     1921 acgactctgc catgtctcat gtggtgatga ttgcacgagc gttactcgat cctaagacgt
     1981 tcgaccaggt ccttaccgag gaccgtctcg cggaacttga tggactaatc gaagatggga
     2041 cgtacgttcg tgggtctcga aacctcgggt ggttggctga ctctgtcgac tcggcgggtg
     2101 agtacgtcga cgtcctcgag gacgcgagag acgagctact cgacatgacg cggtcacttg
     2161 cacatgagga ctacgagtgt gagacgtccg agtacctgag tcgaatcacg aaaacggcga
     2221 tgggtctcgc gggaaccgcg tttcacgtcc tcgatttact cgatattgac gtcgtttggg
     2281 aggctcgctt acccgactac aaccgacacc cggagcgata cggggaggac aatgccgagt
     2341 tgttagcaac gacgcttgcg aagaacgcgc cgattgcggc gacgtacggg aaccacgtag
     2401 tccggcgact gttgtttgaa gaccgagacg agaagcgacg tcagtcgttc gaccctgtcg
     2461 tcgacgcgag caatccgtat gcgaacctga ttgcgtcgat ctcggtggtt ggtgacttcg
     2521 ggaatcgggc ggaccacgtc gccggcgtaa tagaagaccg actgtcgaac cctggggaga
     2581 ttcacgagga cgcgccggag attgcgctca aagtccctgt ggtcgtcgag catggtccga
     2641 gtacggttgc acgagtaaca cgggcaatgt gtcgggcgaa aggtctcgac gcgacgagag
     2701 acgcgatacg gctattctct gggtttgcac ggacaccgta cgacgtagcc cacgcaatcg
     2761 ggcgagggtt gtctcaagaa gcgacaccga gagagattcg gagtagcgaa gtacggcttt
     2821 cactcgcgag tctcccgtcg aagcgtctct tagaggacgc aacccccacg gttcgggcga
     2881 tgattagtac gttgctcgcg acgaatctga gccttagcaa gacagagtta gccgagaaag
     2941 cgggaatctc gacgcagtcg gttcggaacc acttaccgac acttgtagca atggggttag
     3001 tcgacgagac cgagggtcag tgccgactga acctttcgtt cacagacgag caagaacgcc
     3061 acaagcggat tcttccatcg ttcatgctga ccgagtcgtt cactcgagac gtcctctttg
     3121 agacgctaga agcgcttgat gagttgaccg aggaggtaat cgagatatgg gtacaatgcg
     3181 gacctaacgg gctaccggac atcgaccgtc tccatacgat gtacgactgg gtagactggg
     3241 tacgtccctt actgtcgagt ctaaccgaag aacgagacga gacggttcag acgctgtcta
     3301 ttgggccgga gattgcacag caacccctca cggaggcagg ttcgtgattg aactaacctt
     3361 tggtaatatg ttcgtgatat gcgttgtatt cgggtatctc gtaatctcgt ggtatctctc
     3421 gagacagtac gttcatgatt agagtagggt cgacgaactc tgaacctatg aatcgcggtc
     3481 ggacaacaac cccccatgga atcttgaggc aagagacaaa cacggaccac atgaaccccc
     3541 atgagtagta agatgaatta cggtcggttc gggcgatgta ccgcgacagc taagagtacg
     3601 ggaaagcggt gtggtcgacc agcaatcgga ccacatggga agtgtgggtt tcacgggggc
     3661 aagagtagtg gaccgaagaa taccgagtac ctggaggaaa acgactttgc gagaggtaac
     3721 tcgggtgggg gagcgccgaa gctcaacacg aacgcggttc agtctggtgc gtgggtcgac
     3781 ctcgagaagc tcgaggcgcg actctccgag aaagaacgcg acgacgtcga gcgtacgacc
     3841 gaggcatacc tcaagcgggc gacagcggac cttcccgagg acgagctaca agcaaaagcg
     3901 cgagagattg cattactcca aattctccgg tttcgagcga ctggtgacgt ctttactcgg
     3961 gggtttgcgt gggaagaacc gacgtccgtc gacgtcgcgg gcgagagtta cgagtatgag
     4021 tcgactagag taaacccctc tgtcggtcgt gggttagact tgtccgcccg gtggcgacgt
     4081 ctcatgtccg agatcgaagc gtggccttag ttggtgtctt cttgctggtc gatgtaccct
     4141 acaagttgaa tcagaaagtt accgatttga atcgctatct caagtgtttc aatttctgtc
     4201 attgcatact aagagtagtc acggttaggc gcgtcctcga aacaccccat ggaagaaatt
     4261 gctaatcggg ttgtcggtga gtgacaacga gggctagcaa tcggtactaa tcgcaagact
     4321 gcggtacgat acgtactaat caatacgtac gtggatacga aatgcggcgg ttctcaccgg
     4381 aagaatagta cgaatactga gaagtgagga cgcattttcg gaacgtcttc aggcgagcgc
     4441 gcgcccgaag tgccgactac tcgtaacggc aggctggtcg gtgggacgcc gtcgacgtct
     4501 cgccgtcgag gacttcagcc ccacacacgg gacaccggac gtagttgtgc ccagtcggtt
     4561 cgccgtagcg gtcgtactcg gtaaacggtc cttcccagtc gggagtgtcg tcgatgacct
     4621 cggcgtcgtc gccggcgatg atgatagcgg tactgtcttg gcttcgggtt tcgttggtcg
     4681 acatggtctt tcagtctcca tagagaaagg ccggtctcgg tgtcctacca ccgggacgtt
     4741 tcaacacgtc cgaggatacc gtctttctct accatattgt attagccaca tggacataag
     4801 tctttaccat attggttatg ccaaaaggta taatcgggcg gggaacgtac tgaatcgtat
     4861 gccgagggaa catggcgaca gcgggacgtt tgtcgagacg gttagtttag aggacgtctt
     4921 aggagtgttc gacgtggtcg acggaccggt aatcttgtcg gcggacgtcg cagacgagtt
     4981 agattgctcg cgagagacag ctcgtcggaa actacaggca ttatacgaac gcggcgacct
     5041 cgagcgccgg aaagtctcac gacgagtcgt ctattgggaa gccgacgtta cagcggaaac
     5101 gatggggtac gacgagacgg cgagagacgc gccacaagat gccggtgatt ctatcgaggg
     5161 tactcggacg tcgacggcgt caagcgccgc agaaagcaca atagacattg acgcgattct
     5221 ctctgatatt gaggtacctg ggtttggaga gaaagccgag gcgcgaaaga cggcggttcg
     5281 ggcggtcctc gagtacctag tcgaccacaa agaggcggag agtaagactc tcaaagagat
     5341 tgcgtgggaa gccgattcgg agacgtacgc aaatgcacga agtctgtggt cgaacgcggt
     5401 agtcaaagca ctacaccaaa ttcccgaggt atcgagcgcc ggcgagcgac aaagtgggtg
     5461 gtctatagat gagtgacgac ggcgacgacg tcgacccaac caacccacga ccgaaaggtc
     5521 actatggacg gtttcgagat tcaccgtggt actacgtcaa tgacgagtta gcacagacat
     5581 tcatcctcgg accagcaacc gacgcggaac cgggcgacga ctggatactg tcgtttacgg
     5641 gggaaggtgc aaccgagacg gaccgcgaaa gagtgtgtgt ccgactgacg ccgcgagcgt
     5701 tgcacgagct atacatcgag acgaaagact tgtcgccgga cgctcgacag gcgggacaca
     5761 ccgccgagtg tgacctttgc ggggaaagcg tcccgctgga gaaggccgtc ccgaacaaac
     5821 gcgaggagcc ggttcacaaa cgctgttatg tcgacgccta cggcgggccg gtatggatgg
     5881 aagattattg agccgggttt aaccaacagt cggacgtccc gataggtcgg tgttggttaa
     5941 gagcgtggtt acaccgggag taagcacggc tccagtcgtc gagatataca aggagagacg
     6001 ccgaggacgt caaacgacgc ggtcggcccc ccaggggtta ctcgtcggcg ttatctcgaa
     6061 gctctaagtt cgggaacgct ccgactttgt ccgtattccc cgactcccaa gcttctttga
     6121 ttcgagccat ttgttcctcg ccggttaggt gggagagttc gcccgattcg agtagttggt
     6181 tcacctcggg gtaactgagt tcgtccggct cgcgctcccg taactcgtcg agcggctcgc
     6241 cccgttttac attaacctcg acctcgacct cctcgaccga atacccgcgc tggaggtatg
     6301 cctgtctaac accgctcgcg gcaatcccct cgaaagcgtc ctttgccaaa tcggacggt
//
