LOCUS NC_013742 2801 bp DNA circular BCT 20-JAN-2010 DEFINITION Archaeoglobus profundus DSM 5631 plasmid pArcpr01, complete sequence. ACCESSION NC_013742 VERSION NC_013742.1 GI:284162948 DBLINK Project:43493 KEYWORDS . SOURCE Archaeoglobus profundus DSM 5631 ORGANISM Archaeoglobus profundus DSM 5631 Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus. REFERENCE 1 (bases 1 to 2801) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Wirth,R., Huber,H., Eichinger,K., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete plasmid of Archaeoglobus profundus DSM 5631 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2801) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-JAN-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2801) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Wirth,R., Huber,H., Eichinger,K., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (07-JAN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. URL -- http://www.jgi.doe.gov JGI Project ID: 4085236 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2801 /organism="Archaeoglobus profundus DSM 5631" /mol_type="genomic DNA" /strain="DSM 5631" /db_xref="taxon:572546" /plasmid="pArcpr01" gene complement(16..609) /locus_tag="Arcpr_1855" /db_xref="GeneID:8740557" CDS complement(16..609) /locus_tag="Arcpr_1855" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003401571.1" /db_xref="GI:284162949" /db_xref="GeneID:8740557" /translation="MSKECSHQEAVREVVRTLKEYGYIVKTEAWASTILGHRDCYIDS SGDFDVERWYRDFKFNVANMFLGRHSPWISIHNPNFQTRLDVVGLYYADCEELSLYSF FARTDPFEVAKRTILVEVEHRHSLEEAIKRIKDYPAGRKVILWTGGEIGGVLEEIPIV VAKKYEGDCYISLEFTDILEEHIREIKGKNRHKWLPF" gene 917..1324 /locus_tag="Arcpr_1856" /db_xref="GeneID:8740554" CDS 917..1324 /locus_tag="Arcpr_1856" /inference="similar to AA sequence:KEGG:TVAG_359820" /note="KEGG: exosome complex exonuclease" /codon_start=1 /transl_table=11 /product="exosome complex exonuclease" /protein_id="YP_003401572.1" /db_xref="GI:284162950" /db_xref="GeneID:8740554" /translation="MGSQEVGRIEEEVVEERRQEEEEIDEEEATGSALLTAEEFDKKI EEIKAKVREAVQEALANTLADLLEKEEKEEKRKDETKAEELPKCPKNLSWLKKMFEIL PLDILRNSKLWRYRHCVWALQEAEKEAEKFRNS" gene 1399..2550 /locus_tag="Arcpr_1857" /db_xref="GeneID:8740555" CDS 1399..2550 /locus_tag="Arcpr_1857" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003401573.1" /db_xref="GI:284162951" /db_xref="GeneID:8740555" /translation="MRRPPLNGSKLRDNLKFAISKDHLEEAVVLLRLREELTGLTVTQ LARFLRKKLYPKASKREIYKKVHRILDKLEEKEFVKTKTIGNYRFAKITLEGLRFLAE TLPEWSKQAEVDLNNRLGCTKHLITNYRASREWFEIAIRLLTKPVERFEPIDKELLVL NFTTWLENISDKVLVFMDPETRVVVTKPYRTRFNSPEYIKLLLAKYDEAWKIASENYD VGVFLTVTLPPIFPLKIEQYLLSYILHRLRNWLKRRYGFTPPSIVGNEPQESLNFHKH IVFFGISRIMDKRELTLWLDDKVIRFLENMGHHIQKTVNNRLKPEEVKVFNKLGKKLL KRYLRYKKKHKGYQGPVNWITKVYKDENGKWVFENLPPDLQGNKKDGTF" gene 2537..2788 /locus_tag="Arcpr_1858" /db_xref="GeneID:8740556" CDS 2537..2788 /locus_tag="Arcpr_1858" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003401574.1" /db_xref="GI:284162952" /db_xref="GeneID:8740556" /translation="MELFDGANASVSDYIKKYIIKNLNSALEGTDKEKDPKLAWYWLV RVPFYTISPKLRKPQENPPPLGLVFLGSYSEWDLSYLLV" ORIGIN 1 actctgttta tgcctttaaa aaggtagcca tttatgtcta ttttttcctt taatttctct 61 tatatgctcc tccaaaatat cagtaaattc taaagaaatg taacaatcac cttcatactt 121 ctttgccact actataggaa tttcctcaag cactcctcct atctctccac cagtccagag 181 tataactttt ctcccagctg ggtaatcctt tatccttttt atagcctcct cgagagagtg 241 tctatgctca acttctacca gtatagttct tttagccact tcaaatgggt ctgtcctagc 301 aaaaaaacta tacaaagaca gctcttcgca gtcagcgtag tataacccca ctacatctag 361 ccttgtctgg aagttaggat tgtgtatgct aatccatggg ctatgtcttc caaggaacat 421 gttagctaca ttaaacttga agtctctata ccatctctcg acgtcaaaat ctcccgaact 481 gtctatgtaa cagtctctat gtcctaaaat tgtgctagcc caagcttccg ttttaacgat 541 gtatccatat tctttgagcg ttcttaccac ttctcttacc gcctcttgat gggaacactc 601 cttagacatc ttagttcacc tctaacctat ctagctaagg ttagcttaac tgttggagac 661 cataactttt ttaaccattt ttaaccatat ttttcaataa aaaatgttaa atatcatata 721 gtaatacaca ttccatggcc cacgtaacta taaatgttag cattgaacct ctttcctatg 781 aaaatctgga agaatattgt agagttttgg gtttgtcgaa gtctcgggta atcaatttgc 841 tgttaaagga ccctttgaac gctattgccc ttagccttgc atgtgagctt gtcaaatctt 901 tgaggaggtg atagatgtgg gtagtcaaga ggttggtaga attgaagagg aagttgtaga 961 ggagaggaga caggaagagg aggaaataga cgaggaggaa gctacgggaa gtgctctcct 1021 tactgctgaa gagttcgata aaaaaattga agaaataaag gccaaagtcc gagaagctgt 1081 ccaagaggcc ttagcaaata cattagctga tcttttggag aaagaagaga aagaagaaaa 1141 aagaaaagac gaaacaaaag ctgaagagtt gccaaagtgt cctaaaaacc tctcatggct 1201 caaaaaaatg ttcgagattt tgccattgga cattttaaga aatagcaaac tttggcgata 1261 tagacactgt gtttgggcgt tacaggaggc agagaaagaa gctgagaaat ttaggaattc 1321 ttaaataata tgtcaaacgt tggtttttcg gggtcggcgg tatgcggacc gccggccccc 1381 acataaaaca aagcagagat gaggcgaccc cccttgaatg ggagtaagct acgagacaat 1441 ttaaagtttg ccatttcgaa agatcacctt gaagaagccg tagttttact aaggcttaga 1501 gaggagctta caggattgac agtaactcag ttagctcggt tcttacgtaa aaagctgtat 1561 cctaaagcct ccaaaagaga aatttacaag aaagtccata gaattctcga taaactcgaa 1621 gagaaagaat ttgttaagac aaaaacaata ggaaattacc gttttgccaa aataacgctt 1681 gaaggtcttc gctttttggc ggaaacgctt ccagaatgga gcaagcaagc cgaagttgac 1741 ttgaacaata ggctcgggtg cacgaaacac ctcatcacca actatcgagc ttcccgtgaa 1801 tggttcgaaa ttgccattag actacttaca aagcccgttg agaggtttga gccgatagat 1861 aaggagcttt tggttctaaa cttcaccaca tggctcgaaa atatcagcga taaagtgctt 1921 gttttcatgg acccagaaac aagggtagtt gttaccaagc cttacaggac acgttttaac 1981 tcacctgagt acatcaagct cctgttagcc aagtatgacg aggcttggaa gatagcttca 2041 gaaaactatg atgttggggt atttttgacg gtaacgcttc ctccaatctt tccgctaaag 2101 atagagcaat atcttcttag ctatatcctc cataggctta ggaattggct taaaagacgt 2161 tatggtttta ctccaccgtc tattgtcgga aatgagccac aggagagctt aaacttccat 2221 aaacatattg tattcttcgg aatttcaaga ataatggata agagggagct aacgctttgg 2281 ttagacgata aagtcattag attccttgaa aacatgggtc atcatatcca aaagacggta 2341 aacaatcgtc taaagcctga agaagttaag gtatttaata agcttggaaa gaagctccta 2401 aaacgctatc tgagatacaa gaagaagcac aagggttatc aaggacctgt aaattggata 2461 acaaaggttt acaaggacga aaacggtaaa tgggtttttg agaatctgcc tccagattta 2521 cagggtaata agaaggatgg aactttttga tggagctaac gcttcagttt ccgactacat 2581 taaaaaatac atcatcaaaa acctcaactc agctttagag ggaacagaca aagagaaaga 2641 ccccaaatta gcttggtatt ggcttgtcag agttccattt tacactataa gccctaagct 2701 aagaaaacct caggaaaatc ctccaccttt ggggcttgtt tttcttggat cctattcgga 2761 atgggatttg tcttatttac tagtttaatg cctcttatta g //