LOCUS NC_013738 6072 bp DNA circular BCT 20-JAN-2010 DEFINITION Spirosoma linguale DSM 74 plasmid pSLIN08, complete sequence. ACCESSION NC_013738 VERSION NC_013738.1 GI:284006004 DBLINK Project:43413 KEYWORDS . SOURCE Spirosoma linguale DSM 74 ORGANISM Spirosoma linguale DSM 74 Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Flexibacteraceae; Spirosoma. REFERENCE 1 (bases 1 to 6072) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Schutze,A., Schneider,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete plasmid8 of Spirosoma linguale DSM 74 JOURNAL Unpublished REFERENCE 2 (bases 1 to 6072) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-JAN-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6072) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Schutze,A., Schneider,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (28-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. URL -- http://www.jgi.doe.gov JGI Project ID: 4083212 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6072 /organism="Spirosoma linguale DSM 74" /mol_type="genomic DNA" /strain="DSM 74" /db_xref="taxon:504472" /plasmid="pSLIN08" gene complement(128..874) /locus_tag="Slin_7062" /db_xref="GeneID:8716347" CDS complement(128..874) /locus_tag="Slin_7062" /inference="protein motif:PFAM:PF00657" /note="PFAM: lipolytic protein G-D-S-L family; KEGG: mpt:Mpe_A3464 hypothetical protein" /codon_start=1 /transl_table=11 /product="lipolytic protein G-D-S-L family" /protein_id="YP_003391804.1" /db_xref="GI:284006005" /db_xref="InterPro:IPR001087" /db_xref="GeneID:8716347" /translation="MNVFLTNFTPTVSPYIQSLTFMQLRLLLLLFITLLASCQPTTID VTPGGTKTPLSQTIVIIGSSTAAGWGASEYKYSWAGLLTQELSNGKVVNLAKGGYTSY QLLPTNASHPADRPEADTLRNINAALKEKPNTLILSISSNDLIIGCSVEEIIANFNTI RSKALAAGVAHVIITTPLPRNYSSEVTANLLLQRDLVLKNYGTSAVNIFDPLANEQQL TKAELLSGDGIHPNDKGHMVLFKIISGFLL" gene complement(1062..1493) /locus_tag="Slin_7063" /db_xref="GeneID:8716340" CDS complement(1062..1493) /locus_tag="Slin_7063" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003391805.1" /db_xref="GI:284006006" /db_xref="GeneID:8716340" /translation="MHFSIVNKLASPLNTLVVLFFRRLTSIGLRLQRRLTRWSTITYT LNYLETGRVATTFPVEGLTATVAIAQRNNRIRLTIQVKGQPMIDRPITLYRKILSQDL SGLYESADSTTLIGVIDSSLLQIETTDPDDATAIIVRATRP" gene complement(1657..1962) /locus_tag="Slin_7064" /db_xref="GeneID:8716341" CDS complement(1657..1962) /locus_tag="Slin_7064" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: afr:AFE_1012 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003391806.1" /db_xref="GI:284006007" /db_xref="GeneID:8716341" /translation="MEQRGRNKEPFRADYTYTIEGSVISIIDLDLGSKSVTNDINNVL DDIRAEIGDLAGYAVIYRDSMGRWDGVRLVGSSTEFYALNETDGERAAARLLHLLPG" gene 2048..2548 /locus_tag="Slin_7065" /db_xref="GeneID:8716342" CDS 2048..2548 /locus_tag="Slin_7065" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003391807.1" /db_xref="GI:284006008" /db_xref="GeneID:8716342" /translation="MTNQEYLTIKEAAQLYGRSEQTIRRLVKQHVLTSHVRSEDTPKG KAYQISSILLQQEYEAPALPTLPAVVVPDSLQLENQQLREAVAERDRMIQQLQNRLFE QGDMMNAMANQLTNQLTSQKMSHIEELLLQQNAQIGDLQKRLSAPESDDSTSNRRSLW HRLFGR" gene complement(2567..3493) /locus_tag="Slin_7066" /db_xref="GeneID:8716343" CDS complement(2567..3493) /locus_tag="Slin_7066" /inference="protein motif:PFAM:PF01051" /note="PFAM: initiator RepB protein; KEGG: hso:HS_p03 replication protein" /codon_start=1 /transl_table=11 /product="initiator RepB protein" /protein_id="YP_003391808.1" /db_xref="GI:284006009" /db_xref="InterPro:IPR000525" /db_xref="GeneID:8716343" /translation="MSKNIEIWQDNVLTTARYEMTEAEKNLLYMVVASVRKDDPPTKM YQVSVKEMAEVTGQAELKFETYKQATRKLMSRVFETTLTNGDVLQASFIASALYRKGT GIIQIELSQMVRPFYVDLNTRFTKMQLVAAISLNSTYAKRIYELLCMYKNMKDKTFRR GLTELKTMLWIIDPKTGRDSYTNWTRFEKAVLEVAAKEINGHTDITFNYKPIYGDRPG RGRKPVVEVEFEVFYQAKPEPAQLSSLHERLVKQFRLRPDQADTVLATHSVEVITRQL YDIQTKAADGKVKNVGSYTAKVFGLETKGKEK" gene 4241..4522 /locus_tag="Slin_7067" /db_xref="GeneID:8716344" CDS 4241..4522 /locus_tag="Slin_7067" /inference="similar to AA sequence:KEGG:Nmul_B2796" /note="KEGG: nmu:Nmul_B2796 mobilization protein" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="YP_003391809.1" /db_xref="GI:284006010" /db_xref="GeneID:8716344" /translation="MTDKKSVTLRFRASADEQKQIEAKAQLAGLTVSEYVRRVATGQP VTERLPAELRQVIVGVANNLNQLTRYAHLRQFDDQAINEILHQLKTALR" gene 4519..5466 /locus_tag="Slin_7068" /db_xref="GeneID:8716345" CDS 4519..5466 /locus_tag="Slin_7068" /inference="protein motif:PFAM:PF03432" /note="PFAM: Relaxase/mobilization nuclease family protein; KEGG: lhk:LHK_00918 relaxase/mobilization nuclease topoisomerase/primase fusion protein" /codon_start=1 /transl_table=11 /product="Relaxase/mobilization nuclease family protein" /protein_id="YP_003391810.1" /db_xref="GI:284006011" /db_xref="InterPro:IPR005094" /db_xref="GeneID:8716345" /translation="MIAKTTTGKSFGPALEYGAGLKEGKENKPAQLLGASNLGARDPQ GMAAEMMAVADSSRCQRPVWHTSLNWPKGEEVKKEQLLRAASEYCRQIGADPTRHQVA IYQHHDRPHTHIHIYINRVPVDGGPALDTSHNYARNVKVCQAITEQLGMRKLPEQRQS LNDHNPHKQSVREYVQETLKTTLKNPQTTTVEQLGERLRERGVESQFKHDSKGILVGC SFRYDETAIKGTEVGHKAKQIGEQLSVNQQEQNQSQTAWNALFSGYTAAREKERWNEL LTGYQQTKGEEMKQPKAQQEKRPEIEEKQQKTPKRGLGL" gene 5463..6035 /locus_tag="Slin_7069" /db_xref="GeneID:8716346" CDS 5463..6035 /locus_tag="Slin_7069" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003391811.1" /db_xref="GI:284006012" /db_xref="GeneID:8716346" /translation="MNPQDLFNDIKAIKAQLDELSKRPAPATAEQLTQVTDRPITLDA KSFAQHVLPDLKKGLPDTAAIEQAADKAASRIAHTADQAVQNLEKTTQRIPRHVQVTG DIYGFTTWNAALIYGLVLILVVFGAWLLCDYYREQAQETVIYKQAQEVIRERDYYYNQ IQDYKRNNSKYARLFPTYDDKGFWDQFNKP" ORIGIN 1 gtaatggccc atttagacag gagccggtca gcataggtga tcacaaataa aagtaattta 61 tactctttgc tcgtcacttt agcatccgtt ccccaagtct gcacccgttg cgaattgagc 121 cggtttccta aagcaggaag cctgaaatga tcttaaagag taccatatgc cctttatcat 181 tgggatggat gccgtcccca cttaacagct cggccttggt taactgctgc tcattggcca 241 gcgggtcaaa tatgttgacc gccgaggtgc catagttctt cagtaccagg tctcgctgaa 301 gcagtaagtt ggctgttacc tcgctactgt agttccgcgg caacggcgta gtgataatga 361 catgggccac cccagcggct aacgccttac tacggatggt attgaaattg gcaatgatct 421 cctcaacgct acagccaata atcagatcat tggaagatat gctcagaatc aaggtgttgg 481 gtttctcctt cagggctgcg ttgatgttgc gcagcgtgtc agcctccggc cggtccgccg 541 gatgagaggc attggtcggc agcaactgat aactggtgta gccgcctttt gccaagttca 601 ccaccttgcc attggagagc tcctgggtga gcagacccgc ccaggaatac ttgtattccg 661 aagctcccca gccggctgcg gtggaggaac caatgatgac gatggtttga cttaacggtg 721 tcttggtacc ccccggagtt acatcgattg tggttggctg acaactggct aaaagagtga 781 taaaaagcag tagtagtagt ctaagttgca taaatgttaa actctgtata tacggtgata 841 cggtgggagt aaaattagtc aagaaaacat tcatgttcag cagtgccctt tgtttcctgt 901 gacaggtaac ccgaagacgt ataggtagta atggatcgga ctcggctcat acaggttccg 961 gaagggggtc catcgagcgg gttgaattgc tgacagcatt catccctgcc aacccactga 1021 caaacaccga tgagggacta gcaggacaag atcgtaagcg gttaaggccg agtagccctc 1081 acaatgatcg cggtagcatc gtcgggatcg gtggtctcaa tctgcagtaa ggatgaatcg 1141 atcaccccaa tcagagtagt cgagtcagcg gattcgtaca atccagaaag gtcttggcta 1201 agtattttac gataaagcgt aatggggcgg tcaatcatcg gctgaccttt cacctgaatg 1261 gttaaacgga ttcggttgtt tcgctgagca atggcaaccg tagcggttaa gccctcgacg 1321 ggaaaggtag tagcgactct acccgtttcg aggtagttca gggtgtaggt gatcgtagac 1381 caacgcgtga gacggcgctg taggcgtaaa ccaattgaag taaggcgacg gaaaaacaag 1441 acaactagcg tgtttaaggg agaggctaat ttgttaacta tggaaaagtg caacggttta 1501 aagtagttgc tggtgagtga aacgtataac taaaccgagg gttgttgtat aatagatttt 1561 atgttatgtg actaaataca gaaagcggcc atcttgtcag acaggccgct ttcttcataa 1621 aatacaacga gggtacttat tcccctttcc aactcattag cctggtagca ggtgcagcag 1681 tcgagccgct gcccgctccc catccgtttc attcaaggca tagaattcgg tggagcttcc 1741 taccaggcgg acaccatccc aacggcccat gctatcgcgg tagatgaccg cgtatccggc 1801 cagatcgcca atctcagctc gaatgtcatc cagcacgttg ttgatgtcat tcgttacact 1861 ttttgacccc aggtctaaat cgataattga aatgacactg ccctcaatag tgtaggtata 1921 gtctgctcga aatggttctt tgtttcggcc gcgttgttcc atgagtgata ttttgactaa 1981 tcagaagata ggcttctata tgctggaaag ctctatattt aagccgtgac tactcattct 2041 agctaaaatg actaatcagg aatatttgac gattaaagaa gcggctcagc tttatgggcg 2101 ctctgaacaa accattcggc gattagtcaa acagcatgtt ttgactagtc acgttcgttc 2161 cgaagatact cccaaaggca aagcctatca aatcagttcg atactacttc agcaagagta 2221 tgaagcccct gctctaccta ccttgcccgc tgtggtagta cctgactccc tacagctgga 2281 gaaccagcaa ttgcgggaag cagtggctga acgagatcga atgattcagc aactacaaaa 2341 caggctcttt gagcaaggag acatgatgaa cgctatggct aatcaactga ctaatcagct 2401 gactagtcaa aaaatgagcc atattgaaga attgttgctt caacagaacg cacagatagg 2461 cgatctacaa aagcggttgt ctgcgcctga atctgatgac tcaacgtcta atcggcgcag 2521 tttatggcac cggttgttcg gtcgctgatg catcctcgat caagccttat ttctccttcc 2581 ccttcgtttc caagccaaat actttggctg tataacttcc tacattcttc accttgccat 2641 cagccgcttt ggtttggata tcgtagagtt gacgcgtgat cacttcgact gagtgagtgg 2701 ccagcacggt atcagcctga tcgggtcgaa gtcggaattg tttaactaac cgctcgtgca 2761 gactggacag ttgagccggt tctggtttgg cctggtagaa tacctcaaac tcgacttcga 2821 caacgggttt acgcccacgc ccaggacggt cgccatagat gggtttatag ttgaaagtta 2881 tatcagtatg gccattaatt tctttagctg ctacttctaa aaccgctttt tcaaatcgag 2941 tccagtttgt atagctgtcc cttcctgtct tcgggtcaat aatccaaagc atagttttta 3001 gttctgtcaa gccgcgtcta aatgttttgt ccttcatgtt tttatacatg cagagtagct 3061 cataaatccg tttggcatag gtagaattaa gggatatagc tgccactaat tgcatcttag 3121 taaatcgggt attcagatct acataaaagg gcctcaccat ttgagatagc tcaatttgaa 3181 tgatacctgt accttttcga tacaatgcag aagcaatgaa actggcctgt agtacatcgc 3241 cattagtgag agtcgtttca aagacacggc tcattaactt tcgtgtagct tgcttatagg 3301 tctcaaattt cagttctgct tgaccagtaa cttcagccat ttccttaact gatacttgat 3361 acatcttcgt tggtggatcg tctttgcgta cactggccac taccatgtat agcaagttct 3421 tctcggcctc agtcatctca tatcgagccg tcgtcaaaac gttatcctgc caaatctcta 3481 tattcttgct catttgacct ttctttcaga caaatgtaaa aagtatattg ttaaaactaa 3541 aactactaaa aaaaaatacc ttttcaccga ccaaacgcta ctttattaag caggtttcac 3601 cgaccaaacg ctactttatt aagcaggttt caccgaccaa acgctacttt attaccgacc 3661 aaacgctact ttattaaagt tatccacagt gtaacacatt agtaatcaat gacttatttg 3721 ctaaaaaatc gccttacaag tgtttaacaa gagatattga taatacacaa gagcttgttg 3781 ttggaaaaag tggcttgaaa aagcggcttt tagggttaaa aaaagaagta aaacccatct 3841 aacacctgcc gacttagtaa agggatcaaa aacaaattgg aaagggaaaa agaaagcaaa 3901 aactaaagga gcagaggggg cggcaactat aaatttagtt aacctcgctt tttactaacc 3961 cattcgacca ggtaaccccc atcccgacaa ccgcagtaat ggccatcttt tcccctgtta 4021 ttatctcctg accaatggcc cgtctataat atagggaaaa ataaaattcc acttgcgtcg 4081 aaggccgtcc ggtgcgatat tgtgctggat tgtggaagca agccatgact ttgtagctac 4141 aaaccttcct atcggtcggt tctcgcacaa agtcagcctt tcgtgacgca agcttacgaa 4201 aggccagcct tgccagccgt tccctctgga ctcccgtagt atgaccgaca aaaagagtgt 4261 taccctgcgc tttcgagcca gcgccgatga acaaaagcag atcgaagcca aggcacaact 4321 ggccggtctg acggtgagtg agtacgtgcg ccgggtggcc actggccagc cggtaaccga 4381 gcggctaccc gccgagctgc ggcaggttat tgttggggtg gccaacaacc tgaaccagtt 4441 gacccgctat gcgcatctgc ggcagttcga cgaccaggcg atcaacgaga tccttcatca 4501 gttaaaaacc gcgcttcgat gattgccaag accactaccg ggaagagctt tggccccgct 4561 ctagagtacg gggccggcct gaaggaagga aaagaaaaca aaccggccca gctgctagga 4621 gcgtccaact taggggcgcg tgatccgcag gggatggccg ctgaaatgat ggccgtagcg 4681 gacagcagcc ggtgccaacg tccggtctgg cacacctccc tgaattggcc caagggggaa 4741 gaagtcaaga aggagcagtt actacgagct gcatcggagt actgccgcca gatcggagcc 4801 gatccgaccc gccatcaggt agccatctac caacatcacg accggcccca cacccacatt 4861 cacatttaca tcaatcgggt gccggtagac ggaggccctg cgctcgacac gagccacaac 4921 tacgcccgga atgtgaaagt ctgtcaagcc attaccgagc agttaggcat gaggaagcta 4981 cctgagcaac gccagagcct gaacgaccac aacccccaca agcaaagtgt ccgtgagtat 5041 gtgcaggaga cgctgaaaac aacgctcaag aaccctcaga caacgacggt ggagcagttg 5101 ggtgagcgcc tacgagaaag gggcgtagag agtcagttta agcatgacag taaagggata 5161 ttggtcgggt gcagttttcg ctacgacgaa accgccataa aggggacgga agtaggccac 5221 aaggccaagc agatcggtga gcagttgagt gtgaaccagc aggaacagaa ccaaagtcaa 5281 acggcctgga acgctttgtt ttcgggttac accgctgcca gggagaagga gcgctggaat 5341 gagcttttaa cgggctacca gcaaacgaag ggggaagaaa tgaagcagcc taaggcccaa 5401 caggagaaaa ggccggaaat cgaagaaaaa caacaaaaaa cacccaagcg cgggttagga 5461 ctatgaaccc acaggattta ttcaacgaca tcaaggcgat caaagcccaa ttagacgagt 5521 taagcaaacg ccccgctccg gccacggcgg aacagttaac ccaagtgact gatcggccca 5581 ttacgttaga tgccaagagc ttcgcccagc atgtgctgcc cgatctgaaa aagggtctgc 5641 ccgatacggc cgctattgaa caggcagctg ataaggcggc cagccggatc gcgcacacag 5701 ccgatcaagc ggttcagaac ctggagaaga ctacgcagcg gattccccgt catgtacagg 5761 tcacgggcga catctatgga tttactacct ggaatgccgc tttgatctac ggactcgtct 5821 taatactggt ggtttttggt gcctggttac tgtgtgacta ctaccgggag caagctcagg 5881 aaacggttat ctacaaacaa gcccaggaag taattcggga acgagactac tattacaacc 5941 aaattcaaga ttataagcgt aacaactcaa aatatgctcg gttattcccc acttacgacg 6001 acaaaggatt ctgggatcag ttcaataaac cttgatttga atgaggcaaa actatttgat 6061 tatttacaac ag //