LOCUS NC_013719 3910 bp DNA circular BCT 07-JAN-2010 DEFINITION Citrobacter rodentium ICC168 plasmid pCROD3, complete sequence. ACCESSION NC_013719 VERSION NC_013719.1 GI:283454955 DBLINK Project:43089 KEYWORDS . SOURCE Citrobacter rodentium ICC168 ORGANISM Citrobacter rodentium ICC168 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter. REFERENCE 1 AUTHORS Petty,N.K., Bulgin,R., Crepin,V.F., Cerdeno-Tarraga,A.M., Schroeder,G.N., Quail,M.A., Lennard,N., Corton,C., Barron,A., Clark,L., Toribio,A.L., Parkhill,J., Dougan,G., Frankel,G. and Thomson,N.R. TITLE The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli JOURNAL J. Bacteriol. 192 (2), 525-538 (2010) PUBMED 19897651 REFERENCE 2 (bases 1 to 3910) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (07-JAN-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3910) AUTHORS Petty,N.K. TITLE Direct Submission JOURNAL Submitted (19-AUG-2009) Petty N.K., Pathogen Genomics, Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UNITED KINGDOM COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3910 /organism="Citrobacter rodentium ICC168" /mol_type="genomic DNA" /strain="ICC168" /db_xref="taxon:637910" /plasmid="pCROD3" gene 67..1623 /gene="mob" /locus_tag="ROD_p301" /db_xref="GeneID:8690830" CDS 67..1623 /gene="mob" /locus_tag="ROD_p301" /codon_start=1 /transl_table=11 /product="putative plasmid mobilisation protein" /protein_id="YP_003368555.1" /db_xref="GI:283454956" /db_xref="GeneID:8690830" /translation="MASYHCTVKAGAKGSALKHANYISRSGEYKSYKSREDLEFSSSG NMPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGD RHAYQYAIHNPSGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKK ASIPQTAGERKAALVALRSRWADVQNEHLARYGHESRVDHRSLKEQGINRTPEVHLGP VQAASLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSACSPEL LLQYRKVMKTVIQGEERLARLGDANPNALKEHKLLQNAKAKNESLSEWSRRIHEGTRY LDKLGRDVISAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQESVLETAEREE NEFRYKLQQAESEWKEKYAAFQRTEGYKYVDPTGLDKYREREILAAVSLENTRQKVAE EISVARSQMLSLEPELNMSGDEKAQMRHELLAEMALEQQQQEEKALRIQQTWVREASR SNERDQDMER" misc_feature 106..747 /gene="mob" /locus_tag="ROD_p301" /inference="protein motif:PFAM:PF03389" /note="HMMPfam hit to PF03389, MobA/MobL protein, score 2.2e-73" repeat_region 1706..1711 /note="Rep region repeat" repeat_region 1721..1726 /note="Rep region repeat" repeat_region 1737..1742 /note="Rep region repeat" repeat_region 1744..1749 /note="Rep region repeat" repeat_region 1776..1781 /note="Rep region repeat" repeat_region 1809..1814 /note="Rep region repeat" repeat_region 1822..1827 /note="Rep region repeat" repeat_region 1832..1837 /note="Rep region repeat" repeat_region 1841..1846 /note="Rep region repeat" repeat_region 1851..1856 /note="Rep region repeat" repeat_region 1863..1868 /note="Rep region repeat" gene 2079..3098 /gene="rep" /locus_tag="ROD_p311" /db_xref="GeneID:8690828" CDS 2079..3098 /gene="rep" /locus_tag="ROD_p311" /codon_start=1 /transl_table=11 /product="plasmid replication protein" /protein_id="YP_003368556.1" /db_xref="GI:283454957" /db_xref="GeneID:8690828" /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQ PHAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASV KALKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREDAYTLDELAAYLDLS ASERRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPV PLSLAECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSD KGKKSAAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKK QIIKC" misc_feature 2148..2552 /gene="rep" /locus_tag="ROD_p311" /inference="protein motif:PFAM:PF03090" /note="HMMPfam hit to PF03090, Bacterial plasmid replicase, score 1e-77" misc_feature 2565..2792 /gene="rep" /locus_tag="ROD_p311" /inference="protein motif:PFAM:PF08708" /note="HMMPfam hit to PF08708, Primase, C-terminal 1, score 3.8e-29" misc_feature 2988..3053 /gene="rep" /locus_tag="ROD_p311" /note="Predicted helix-turn-helix motif with score 1525.000, SD 4.38 at aa 304-325, sequence ASTEDIAVAVGVSSRTIRRWMD" gene complement(3359..3892) /locus_tag="ROD_p321" /db_xref="GeneID:8690829" CDS complement(3359..3892) /locus_tag="ROD_p321" /codon_start=1 /transl_table=11 /product="conserved hypothetical plasmid protein" /protein_id="YP_003368557.1" /db_xref="GI:283454958" /db_xref="GeneID:8690829" /translation="MILRSHTQADKVILCTITTHINGKSAEVRMTNREEWLSAKIAYI NGLKSPSEQQRLLVLLAEKKNRTTTDEKTLSALIRAEKTAEKAAAAKARVTAIIAAER KAAARAERKARDHELYKAAGLMIVAGLVDSKTGKPKFSAAELVGALAGIAELPRNHPK WQEWEKRGKELLAKDSA" repeat_region 3699..3706 /note="(t)8" ORIGIN 1 tgcgcactta gtagtttctc tccttcgtcg agaaactgtg cgctcctgcg gagggctaaa 61 aggcagatgg caagctacca ttgcactgtc aaagctggag caaaaggcag tgccttaaaa 121 catgctaatt acatttccag atccggcgaa tataagagct acaaatcgcg ggaggatctg 181 gaattttcgt catccggtaa catgccatca tgggcgaaga aaaatcccgc agagctatgg 241 aaagccgcag atgaatttga acgaaaaaac gggactgcgt accgtgaaat tgagatcgcg 301 ttaccgcgtg aactgacacg cgaacaacgg atagaacttg ttgaagattt cgtgcaaaag 361 gaacttggcg atcgccatgc ctaccagtac gcgatccaca atccgtcagg tgcaatcgac 421 ggaaaggaac agccacacgc gcatatcatg ttttgcgagc ggattaatga tggtattgaa 481 cgcgatccgc agcaattttt taaacgtgcc aacagcaaat caccagaacg gggaggcgca 541 aaaaaagcga gtattcccca gacagccgga gagcgaaaag ccgcccttgt tgcgctgcgt 601 tcccgctggg cagatgtgca gaatgagcac cttgcgcgat acggtcacga gtcgcgcgta 661 gatcatcgtt ctctgaaaga acagggtatc aatcgcacgc cggaagttca tcttggcccc 721 gttcaggccg ccagtctcaa tggtgagcag attgttgcaa tccaggaacg gaggaatgct 781 gagcgggaac tcaagaccgc cagagatgcc gcaaatgcca ttcagcagga acaggagcaa 841 aagcaaaaaa tcaaggcagt tgagcctgtt cgttcagcct gttcaccgga gttattgctt 901 cagtaccgca aggttatgaa aacggtcatt cagggagagg aaaggcttgc tcgtttaggg 961 gatgccaatc ccaatgcgct caaagaacat aagctgcttc agaatgcgaa agctaaaaac 1021 gaatctcttt ccgaatggag tagacgaata catgaaggga ctcggtattt agacaaactt 1081 gggcgtgatg ttatttccgc acaaagggag ctacgagagt tacaggaaca acgcaatgct 1141 ctgaatggga ttcgtggcct gtttcggggg gctgacaaaa gggagattga tgcgcgtatt 1201 ctggagcaag aaagcgtgct ggaaaccgcc gaacgtgaag agaatgagtt caggtacaag 1261 ctacagcaag ctgagtccga gtggaaagag aaatacgctg cttttcagcg taccgaggga 1321 tataagtacg ttgatcctac ggggctggac aagtacagag aacgtgagat tctggccgca 1381 gtctctttag agaacaccag gcaaaaagtt gccgaagaaa tatccgttgc ccgtagccag 1441 atgttatctc tggagcctga acttaatatg tctggagatg aaaaagctca aatgcgacat 1501 gagttactgg cagaaatggc gttggaacag cagcaacagg aagaaaaagc gctgcgtata 1561 cagcaaacct gggtcagaga ggcatctcgt agtaacgaac gtgatcaaga tatggagcgt 1621 tgaaaatgta gcaatatcgg gactgcgccc cgaaccccgc caacgtttca cggaacgcga 1681 aaaaattccg cgtcccgttc accgttttct gatgagaaag tttgctgttt tgacccgttc 1741 gcccttctga acgctcgaaa cagatcgcgc attgctttcg tgaatagtta tgcagcctcc 1801 taaaaacaat tctgccgcgt ttttctggtt cttcctggtg tttccttgta tttctgcgtt 1861 ttttgcgtca gaaagcgtct gagagcgttt taaggggggc gcacaacggg agttatggta 1921 aatggatcgg ttttgcggga aggctcgaca ggttttgttg ttgggggtag tgtaagcgac 1981 tgaaaaacaa acgcccctga aattcgtgtc tctccgccaa gattgtcacg agaatacagg 2041 ggcgaggtcg gtcgataacc tagaaggaat cgtaacacat gagcgccgcg cttcaatact 2101 tcgaagaaaa tttaccccac cgcccctatc acacggatga tctcgctttc ggccttcgca 2161 tctccggcaa agggcgtgcg cttcttgcgc ggtacatcca gcagaaccag cctcatgcgc 2221 agttctggct ggtttttgac gttgaccgcg agggggctgc gattgactgg agcgaccgga 2281 acgcccccgc gccgaacatc accgttaaaa atcctgtgaa cggacacgct cacctgctct 2341 acgcactcaa catcgccgtg agaaccgcgc ctgatgcctc ggttaaggcg ctgaaatatg 2401 ccgcagcggt tgaacgttcg ctgtgtgaga aactttgtgc tgatgtgaac tacagcggcc 2461 tgatttgcaa aaatccgttc cacctggaat ggcaggtgat ggagtggcgc gaggacgcct 2521 ataccctcga tgaactggca gcttatctcg atttgagcgc ctcagagcgt cgtagcatcg 2581 ataaacatta cgggatgggg cgaaactgcc acctgttcga aatgacgcgc aaatgggctt 2641 acagggcgat tcgtcagggc tggccagcgt tctcacagtg gcttgaagcg gtgatccagc 2701 gtgtcgaaat gtacaatgca tcgcttcccg ttccgctttc actggctgaa tgtcgggcta 2761 ttggcaagag cattgcgaaa tacacgcaca ggaacttcac gccggaaact ttcgcacagt 2821 atgtggctga tacgcacacg ccagaaattc aggcagcacg cggtcgcaag ggcgggaagg 2881 ccaattcgtc agaaaatcag tcggacaaag ggaaaaaaag cgccgctgtt cggtggactg 2941 ctaacgacga caaacgtcgt agggcgcttg atatgtatat cttgggagcg tcaacggaag 3001 atattgcagt ggcggttggt gttagcagcc ggactattcg acgctggatg gataattctg 3061 gagaatggct aaccaagaaa caaataatta aatgttagtt aacaaagaag caacaatacc 3121 ccccgttttt tgttaatggt tggttaaatt cgcggacatg aacaagccta tatcagataa 3181 cagcgccttt cggcgtcttt ttgagcagcg ggctttccgg cggttttctc ctctcagccc 3241 agcaatggtg cggcttaccg catgattgag gtggtcgtgc tcgccgcagt ctcatgaccg 3301 agcgtagcga gcgaatgagc gaggaagcac cagggaaccg gaacgtgaac ggaggctctt 3361 acgcactgtc tttggcgagt agctctttcc cgcgtttttc ccattcctgc catttgggat 3421 ggttgcgcgg tagctctgcg attcctgcga gtgcgcctac cagttcggca gcactaaact 3481 ttggttttcc ggttttgctg tccaccagtc ctgccacaat catgaggcct gcggccttgt 3541 aaagttcatg atcccgcgcc tttcgttctg cccttgcggc tgccttccgt tctgccgcta 3601 tgattgccgt taccctggct tttgctgcgg ctgctttctc tgcggttttt tctgcccgta 3661 tcagtgcgga caacgttttt tcatccgtcg ttgttcggtt ttttttctct gccagtaaca 3721 caagtaatct ctgctgctct gacggtgatt tcagtccgtt gatgtaggca atttttgcac 3781 ttaaccactc ttcacgattt gtcattctta cctctgcact tttgccgtta atgtgagttg 3841 ttattgtgca taatatcacc ttgtctgcct gcgtgtgaga ccgtaaaatc atccctgatt 3901 aattcaggga //