LOCUS NC_013452 4440 bp DNA circular BCT 22-NOV-2009 DEFINITION Staphylococcus aureus subsp. aureus ED98 plasmid pT181, complete sequence. ACCESSION NC_013452 VERSION NC_013452.1 GI:262225767 DBLINK Project:41455 KEYWORDS . SOURCE Staphylococcus aureus subsp. aureus ED98 ORGANISM Staphylococcus aureus subsp. aureus ED98 Bacteria; Firmicutes; Bacillales; Staphylococcus. REFERENCE 1 (bases 1 to 4440) AUTHORS Lowder,B.V., Guinane,C.M., Ben Zakour,N.L., Weinert,L.A., Conway-Morris,A., Cartwright,R.A., Simpson,A.J., Rambaut,A., Nubel,U. and Fitzgerald,J.R. TITLE Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus JOURNAL Proc. Natl. Acad. Sci. U.S.A. 106 (46), 19545-19550 (2009) PUBMED 19884497 REFERENCE 2 (bases 1 to 4440) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-OCT-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4440) AUTHORS Lowder,B.V., Guinane,C.M., Ben Zakour,N.L. and Fitzgerald,J.Ross. TITLE Direct Submission JOURNAL Submitted (30-SEP-2009) The Roslin Institute and Centre for Infectious Diseases, Royal (Dick) School of Veterinary Studies, University of Edinburgh, The Chancellor's Building, New Royal Infirmary, 49 Little France Crescent, Edinburgh EH16 4SB, Scotland, UK COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4440 /organism="Staphylococcus aureus subsp. aureus ED98" /mol_type="genomic DNA" /strain="ED98" /sub_species="aureus" /db_xref="taxon:681288" /plasmid="pT181" gene 44..1285 /locus_tag="SAAV_b1" /db_xref="GeneID:8554421" CDS 44..1285 /locus_tag="SAAV_b1" /codon_start=1 /transl_table=11 /product="plasmid recombination enzyme type 3" /protein_id="YP_003283623.1" /db_xref="GI:262225768" /db_xref="GeneID:8554421" /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLN YDLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQ FFEYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALT AFQDRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIK QKNDKLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQK QIKAAQDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKP LKENIEIALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELY SEQEQQQEQQKNQKRDRGMHL" gene complement(1623..1717) /locus_tag="SAAV_b2" /db_xref="GeneID:8554419" ncRNA complement(1623..1717) /locus_tag="SAAV_b2" /ncRNA_class="antisense_RNA" /product="ctRNA" /db_xref="GeneID:8554419" gene 1812..2756 /locus_tag="SAAV_b3" /db_xref="GeneID:8554420" CDS 1812..2756 /locus_tag="SAAV_b3" /codon_start=1 /transl_table=11 /product="replication initiation protein" /protein_id="YP_003283624.1" /db_xref="GI:262225769" /db_xref="GeneID:8554420" /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLS FDAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADS WDRRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDK AVKKTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELK RDMVDYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLI KEISPVDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK" gene 2918..4297 /locus_tag="SAAV_b4" /db_xref="GeneID:8554422" CDS 2918..4297 /locus_tag="SAAV_b4" /codon_start=1 /transl_table=11 /product="tetracycline resistance protein" /protein_id="YP_003283625.1" /db_xref="GI:262225770" /db_xref="GeneID:8554422" /translation="MFSLYKKFKGLFYSVLFWLCILSFFSVLNEMVLNVSLPDIANHF NTTPGITNWVNTAYMLTFSIGTAVYGKLSDYINIKKLLIIGISLSCLGSLIAFIGHNH FFILIFGRLVQGVGSAAFPSLIMVVVARNITRKKQGKAFGFIGSIVALGEGLGPSIGG IIAHYIHWSYLLILPMITIVTIPFLIKVMVPGKSTKNTLDIVGIVLMSISIICFMLFT TNYNWTFLILFTIFFVIFIKHISRVSNPFINPKLGKNIPFMLGLFSGGLIFSIVAGFI SMVPYMMKTIYHVNVATIGNSVIFPGTMSVIVFGYFGGFLVDRKGSLFVFILGSLSIS ISFLTIAFFVEFSMWLTTFMFIFVMGGLSFTKTVISKIVSSSLSEEEVASGMSLLNFT SFLSEGTGIAIVGGLLSLQLINRKLVLEFINYSSGVYSNILVAMAILIILCCLLTIIV FKRSEKQFE" ORIGIN 1 attaaataca catgaaacct ttgtgcttag gagtgatttt tatatgtctt attccattgt 61 tagagtttca aaagttaaat ctggaacaaa tacaacgggc atacaaaaac atgttcaaag 121 agaaaataat aattatgaaa atgaagatat agaccatagt aaaacttact taaattatga 181 tttggtaaat gctaataaac agaattttaa taacttgatt gatgaaaaaa tcgaacagaa 241 ttatacaggc aaaagaaaaa ttagaacaga cgcgattaaa cacattgatg gtttaattac 301 atcagacaat gatttctttg ataatcaaac gccagaagat acaaagcagt tttttgaata 361 tgctaaagag tttttagaac aagaatacgg taaagataat ttattatatg caacagttca 421 catggacgaa aaaacaccac atatgcatta tggcgttgtt ccaataactg atgatggtcg 481 tttaagtgct aaagaagttg taggtaataa aaaagcttta acagcgtttc aagatagatt 541 taatgagcat gttaaacaac gaggatatga tttagaacgt gggcaatcaa gacaagtaac 601 aaatgctaaa catgagcaaa taagtcagta taaacaaaaa acagaatatc ataagcaaga 661 atatgaacgt gagagccaaa aaacagacca tataaagcaa aagaacgata aattaatgca 721 agagtaccaa aaatcgttaa atacgcttaa aaagcctata aatgttccgt atgagcaaga 781 aactgaaaaa gtaggtggtt tatttagcaa agaaatacaa gaaactggaa atgttgtaat 841 aagccaaaaa gatttcaatg aatttcagaa acagataaaa gctgctcaag atatttcgga 901 agattacgag tatataaagt ctggtagagc cttagatgat aaagataagg aaatacgaga 961 gaaagatgat ttattaaata aagcagttga gcgtattgaa aacgcagacg ataattttaa 1021 ccaactttac gaaaatgcaa agccacttaa agagaatata gaaatagcgt taaagctttt 1081 aaaaatctta ctaaaagagt tagaacgagt tttaggaaga aatacctttg cggaaagagt 1141 taataagtta acagaagatg aaccaaaact aaatggttta gcaggaaact tagataaaaa 1201 aatgaatcca gaattatatt cagaacagga acagcaacaa gaacaacaaa agaatcaaaa 1261 acgagataga ggtatgcact tatagaacat gcatttatgc cgagaaaact tattggttgg 1321 aatgggctat gtgttagcta acttgttagc gagttggttg gacttgaatt gggattaatc 1381 ccaagaaagt accaactcaa caacacataa agccctgtag gttccgacca ataaggaaat 1441 tggaataaag caataaaagg agttgaagaa atgaaattca gagaagcctt tgagaatttt 1501 ataacaagta agtatgtact tggtgtttta gtagttttaa ctgtttacca gataatacaa 1561 atgcttaaat aaaaaaagac ttgatctgat tagaccaagt cttttgatag tgttatatta 1621 ataacaaaat aaaaaggagt cgctcacgcc ctgaccaatg tttgtgaacg acatcattca 1681 aagaaaaaaa cactgagttg tttttataat cttgtatatt tagatattaa acgatattta 1741 aatatacatc aagatatata tttgggtgag cgattcctta aacgaaattg agattaagga 1801 gtcgattttt tatgtataaa aacaatcatg caaatcattc aaatcatttg gaaaatcacg 1861 atttagacaa tttttctaaa accggctact ctaatagccg gttggacgca catactgtgt 1921 gcatatctga tccaaaatta agttttgatg caatgacgat cgttggaaat ctcaaccgag 1981 acaacgctca agccctttct aaatttatga gtgtagagcc ccaaataaga ctttgggata 2041 ttcttcaaac aaagtttaaa gctaaagcac ttcaagaaaa agtttatatt gaatatgaca 2101 aagtgaaagc agatagttgg gatagacgta atatgcgtat tgaatttaat ccaaacaaac 2161 ttacacgaga tgaaatgatt tggttaaaac aaaatataat aagctacatg gaagatgacg 2221 gttttacaag attagattta gcctttgatt ttgaagatga tttgagtgac tactatgcaa 2281 tgtctgataa agcagttaag aaaactattt tttatggtcg taatggtaag ccagaaacaa 2341 aatattttgg cgtgagagat agtaatagat ttattagaat ttataataaa aagcaagaac 2401 gtaaagataa tgcagatgct gaagttatgt ctgaacattt atggcgtgta gaaatcgaac 2461 ttaaaagaga tatggtggat tactggaatg attgctttag tgatttacat atcttgcaac 2521 cagattggaa aactatccaa cgcactgcgg atagagcaat agtttttatg ttattgagtg 2581 atgaagaaga atggggaaag cttcacagaa attctagaac aaaatataag aatttgataa 2641 aagaaatttc gccagtcgat ttaacggact taatgaaatc gactttaaaa gcgaacgaaa 2701 aacaattgca aaaacaaatc gatttttggc aacatgaatt taaattttgg aaatagtgta 2761 catattaata ttactgaaca aaaatgatat atttaaacta ttctaattta ggaggatttt 2821 tttatgaagt gtctatttaa aaatttgggg aatttatatg aggtgaaaga ataatttacc 2881 cctataaact ttagtcacct caagtaaaga ggtaaaattg tttagtttat ataaaaaatt 2941 taaaggtttg ttttatagcg ttttattttg gctttgtatt ctttcatttt ttagtgtatt 3001 aaatgaaatg gttttaaatg tttctttacc tgatattgca aatcatttta atactactcc 3061 tggaattaca aactgggtaa acactgcata tatgttaact ttttcgatag gaacagcagt 3121 atatggaaaa ttatctgatt atataaatat aaaaaaattg ttaattattg gtattagttt 3181 gagctgtctt ggttcattga ttgcttttat tggtcacaat cactttttta ttttgatttt 3241 tggtaggtta gtacaaggag taggatctgc tgcattccct tcactgatta tggtggttgt 3301 agctagaaat attacaagaa aaaaacaagg caaagccttt ggttttatag gatcaattgt 3361 agctttaggt gaagggttag gtccttcaat agggggaata atagcacatt atattcattg 3421 gtcttaccta cttatacttc ctatgattac aatagtaact ataccttttc ttattaaagt 3481 aatggtacct ggtaaatcaa caaaaaatac attagatatc gtaggtattg ttttaatgtc 3541 tataagtatt atatgtttta tgttatttac gacaaattat aattggactt ttttaatact 3601 cttcacaatc ttttttgtga tttttattaa acatatttca agagtttcta acccttttat 3661 taatcctaaa ctagggaaaa acattccgtt tatgcttggt ttgttttctg gtgggctaat 3721 attttctata gtagctggtt ttatatcaat ggtgccttat atgatgaaaa ctatttatca 3781 tgtaaatgta gcgacaatag gtaatagtgt tatttttcct ggaaccatga gtgttattgt 3841 ttttggttat tttggtggtt ttttagtgga tagaaaagga tcattatttg tttttatttt 3901 aggatcattg tctatctcta taagtttttt aactattgca ttttttgttg agtttagtat 3961 gtggttgact acttttatgt ttatatttgt tatgggcgga ttatctttta ctaaaacagt 4021 tatatcaaaa atagtatcaa gtagtctttc tgaagaagaa gttgcttctg gaatgagttt 4081 gctaaatttc acaagttttt tatcagaggg aacaggtata gcaattgtag gaggtttatt 4141 gtcactacaa ttgattaatc gtaaactagt tctggaattt ataaattatt cttctggagt 4201 gtatagtaat attcttgtag ccatggctat ccttattatt ttatgttgtc ttttgacgat 4261 tattgtattt aaacgttctg aaaagcagtt tgaatagtta tattatattt tggtttagaa 4321 ctatgagtgg ctagcatttt gccactcatt ttttgcgtta gcaaaaacag gtttaagcct 4381 cgcagagcac acgtattaac gacttattgt aaaataagtc tagtatgtta gacttaaact //