LOCUS NC_013409 4704 bp DNA circular BCT 16-OCT-2009 DEFINITION Methanocaldococcus vulcanius M7 plasmid pMETVU02, complete sequence. ACCESSION NC_013409 VERSION NC_013409.1 GI:261403873 DBLINK Project:41131 KEYWORDS . SOURCE Methanocaldococcus vulcanius M7 ORGANISM Methanocaldococcus vulcanius M7 Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus. REFERENCE 1 (bases 1 to 4704) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lcollab,F.I., Brettin,T., Detter,J.C., Han,C., Tapia,R., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinikova,G., Sieprawska-Lupa,M., Whitman,W.B. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of plasmid2 of Methanocaldococcus vulcanius M7 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4704) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-OCT-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4704) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Davenport,K., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinikova,G., Sieprawska-Lupa,M., Whitman,W.B. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (06-OCT-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. URL -- http://www.jgi.doe.gov JGI Project ID: 4085125 Source DNA and bacteria available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4704 /organism="Methanocaldococcus vulcanius M7" /mol_type="genomic DNA" /strain="M7" /db_xref="taxon:579137" /plasmid="pMETVU02" gene 487..942 /locus_tag="Metvu_1764" /db_xref="GeneID:8514137" CDS 487..942 /locus_tag="Metvu_1764" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: mja:MJ0129 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003248096.1" /db_xref="GI:261403874" /db_xref="GeneID:8514137" /translation="MDDNPIVKKLDAITKTLFTIIRSLGIVFITIMIDAIISPSYYSG FIALTLGVLSFVPILGMVFYGLIDSCLCNLQYEDRIKGLYNFFLEIFQTIIQFGIVGI GLFLINAYKSNISPKISLAFITTYIVITLLSAVITLLQINKYYEMLKKH" gene complement(1651..4497) /locus_tag="Metvu_1765" /db_xref="GeneID:8514136" CDS complement(1651..4497) /locus_tag="Metvu_1765" /inference="protein motif:PFAM:PF00493" /note="PFAM: MCM family protein; SMART: MCM family protein; KEGG: mae:Maeo_1144 MCM family protein" /codon_start=1 /transl_table=11 /product="MCM family protein" /protein_id="YP_003248097.1" /db_xref="GI:261403875" /db_xref="InterPro:IPR001208" /db_xref="GeneID:8514136" /translation="MDNYVDSSINNLSNNSDEFEHLNIKIDTIFKQDVKALLGFLKAK VSNSKDLDRERKFAHNRGLLDDNDFPTKKAINILEILFKLFPDIDFTNIDTIKLIDIT EIVDKINQIMENNNQIINTELTCINSESENGNSINSDKEVLTCINSESENGNSINSDK EVLTCINSELIQVNNINNMDKIKSSLNKIKEDIRKLCNELLKKEGVNKSSMPKDAFYD CINWLLNSSLDFRYIEENIKDLNASLSAYKVTISYLKKIQWIYEDTTGLYKLNVDKFL SDLNRSGLLKKVEYEKKIATNDYDEETRDRMAGAYEKLVRGFHVDDSGVFRFEFGDGS LDQYYVSSYLLNNTWHVIDRLQRNYFLNWRKEHVSAIECNNTVLFPLLKCHFTNIPMT AKEYIQYPDPSKVGKLIVVEAEVLETSPIKNIVICAEYGEEDNPHIEYFDLNTKKIPE VIKIGSGEDKRELKLIRKYIHTVQEFLLQQPIDELNPKEEPKPIKAVWVGAEGLFDVG AKVRVVGILDIDKSDRPISPYLIRILSIEEIEEFSHGLSEEDIKIAKDYYNSKKGDLF RIADDLFPNIVDNELLKVAVLLQLCNVESEPRDGFNWNIHILMVGDPSTGKSRVLKRV YTLFPNNQYVDLTNATQAGLVGAIEKIKGYLGEVYSFRRGAIPKANGAVLCLDEKNKD TYKYFNTSMEDGFTKVNKVGRDIHLKTNCAYLWGCNPKREKFDLDRTLTEQIDIPDSI LSRFDLIFALFNNVKEKEDIKQIVRAIKGGNEKGYVDEDVLKRYILYARTFNPVISDE IDDFIVDYYYELQGKSEMIDARVIKSLLKLVRAIAKAHLRNEVKKEDFELAKQIYQKY LDTILYDPESGVYDFGKLGKATKSERDKMDKLIEIIKELSELRDDNLAPQVDIEERAK ELLGIEGHEVERLLNKLKGEGEVYNPRAGMWGLT" ORIGIN 1 atatgcgata taatacattt gaaaaactta tgttgttagt ttatttgcca tgttttagat 61 gagatctaac ctattttgca tgtttacgat ttcgacgtaa agtcgaaatt ataattgtaa 121 ttatttgcat gtttttttat atttattatg aaatttaata atctattgtc aacgtttttt 181 atttggctgt taatacgtgt taacacaata tttcatgatt tacgctttaa attataacat 241 tattatattt gtgtaaatac ggatttatac aatattatag agagtgtaat acttaaaatt 301 tgtttaagca aacaattgaa gattaactaa ttgtaattga tgtatctaaa taacgtttct 361 aaattacgag ttattcgaaa aacattacaa ttcgaaaaat agaaaatgat aatagcattt 421 taacgttaac tatatctaaa cattaaaatc ataaaaatat tctttaagga aatttgtggt 481 gttggtatgg atgacaatcc catagttaaa aaattggatg caattactaa aacattattt 541 actattataa gaagtttagg gattgttttt ataaccatta tgatagatgc aattataagc 601 ccatcctact actctggatt tattgcctta acattggggg ttttatcgtt cgttccaata 661 ttgggaatgg tattttatgg attaatagac agttgcttat gtaatttaca atatgaagat 721 agaattaaag gattgtataa cttctttttg gagatatttc aaacgataat acaatttgga 781 attgttggaa ttggattatt cctaataaat gcatataaat caaatataag tccaaaaata 841 agtttagcat ttataacaac ttacattgta attacattgt tatccgcagt tattacgcta 901 ttacaaataa acaaatatta tgaaatgtta aaaaagcatt aatctttaga caaatacttt 961 ttatcaaact taacagccca aatatagaac ataatagtaa tagcaaaaat aaatactgcc 1021 aatccaataa agccgatata aaagttgttt atctccataa ctaccagccc ctatttttct 1081 acttatgatt atgacaacta ttggatataa ttttttgcat gacttataga atcaaagaga 1141 gtgcagttat tatatagttt ttagattgaa gtatttaaat ctataactaa tttaatcagc 1201 tgagtcatta ctcatattta tattttttct tgcagtaaat aatatatcat cacacacaaa 1261 catagtttaa agcaagtttg ctattttttc cttaaaggca attaacaaca acaaggttgt 1321 cgtaatttaa ctccaaaaaa agtatataaa acagcgatgt tttttgcagt tcaaaaataa 1381 tataattatg catttatatt agtcgaattt ttcaattctt aaatttcgcc ttaaagtcga 1441 atttctacat ttcgattaat aacgatattt tgtgccttaa aattgcttaa acaaaaaatc 1501 ttgaaaagat tagctgaata taagatcaag ttgttttcta aatttccatc tgattaataa 1561 tatactcatt tctgcttttt aaatcagtat cattgttcca aactggacag ttttcataat 1621 atgtattttc tcaaaattat taaagttatt ttaagtcaac ccccacattc ctgctcttgg 1681 gttatatact tcaccctccc ctttaagttt attcaacaac ctttcaactt catgaccctc 1741 aatacctaac aactctttag ctctctcttc aatatcaact tgtggagcta aattatcatc 1801 ccttaactcc gaaagctctt ttataatttc tataagttta tccattttgt ctctttctga 1861 ttttgtggcc ttccctaact ttccaaaatc atatactcca ctttcagggt catataatat 1921 agtgtctaaa tacttttgat agatttgttt agccaattca aagtcctctt ttttaacctc 1981 atttcttaaa tgtgccttcg ctatggctct aactaatttt aacaatgatt tgataaccct 2041 cgcatcgatc atttcacttt taccttgcaa ttcataataa taatcaacta tgaaatcatc 2101 aatctcatct gagatcactg gattaaaagt tcttgcatat aaaatgtatc tcttcaaaac 2161 atcctcatca acatacccct tttcattgcc tccttttatt gcccttacta tctgcttaat 2221 atcctccttc tccttaacat tattaaataa cgcaaaaatc aaatcaaacc ttgataaaat 2281 tgagtcagga atatcaatct gctcagtcaa tgttctgtct aaatcaaact tctctctctt 2341 aggattacaa ccccacaaat aagcacaatt tgtttttaaa tgtatgtctc tccctacctt 2401 attaactttc gtaaaaccat cctccatgga cgtgttaaag tatttataag tgtctttatt 2461 tttctcatct aaacacaata ccgccccatt tgccttgggt atagcccccc ttctaaatga 2521 atagacctct cccaaatagc cctttatctt ttcaatagct ccaactaaac ctgcctgagt 2581 agcgttagtc aggtcaacat attgattatt tggaaacagg gtataaactc tctttaaaac 2641 tctcgactta ccagtcgaag gatctccaac cattaagata tggatattcc aattaaaccc 2701 atcccttggc tcactttcaa cattacataa ttgtagcaac acagcaactt ttaacaattc 2761 gttgtcaaca atgttcggaa acaaatcatc agctattcta aataaatctc cctttttact 2821 attgtaataa tccttagcta tctttatatc ctcttctgaa agcccatgac taaattcctc 2881 aatctcctca atactcagga tccttattaa gtaaggagat attggcctat cagatttatc 2941 aatgtctaaa attcccacaa ctctaacctt agccccaaca tcaaacaacc cttcagctcc 3001 tacccaaaca gctttaattg gcttcggctc ttcttttgga tttaactcat ctattggttg 3061 ttgaagtagg aactcctgaa cggtatggat gtattttcta atcaatttta actctctttt 3121 atcctctcca ctgccaattt ttataacctc tgggattttc ttagtgttta aatcaaaata 3181 ctcaatatga ggattatctt cctccccata ctctgcacat atgacaatat tctttattgg 3241 agacgtttcc aatacctctg cctctacaac tattaactta ccaactttcg aaggatcggg 3301 gtattggata tattccttgg cagtcatcgg aatgtttgta aagtggcact tcaataaagg 3361 aaataaaacc gtattattac attctattgc actaacatgc tcctttctcc agtttaagaa 3421 ataattacgc tgcaacctat cgatgacatg ccaagtatta ttcaacaaat acgatgacac 3481 ataatactga tcaagagatc catccccaaa ctcaaaccta aaaactccac tatcatcgac 3541 atgaaaaccc ctcacaagct tttcataagc cccagccatc cgatctctcg tctcttcatc 3601 ataatcatta gttgcaatct ttttttcata ctcaaccttc tttaataaac cagatctatt 3661 caaatcagat aggaatttat ccacattcaa cttgtaaagc cccgtagtgt cttcatatat 3721 ccattggatt tttttaagat atgagattgt aaccttatag gcactcaaag aggcgtttaa 3781 atctttaata ttttcctcaa tgtatctaaa atctaaacta ctatttaata accagtttat 3841 acaatcataa aaggcatctt ttggcattga acttttattc actccttctt tttttagcaa 3901 ttcattacat aactttcgga tgtcttcttt tattttgtta agtgatgatt tgattttatc 3961 catattgtta atattattaa cttgtattaa ttcactgtta atacacgtta atacctcttt 4021 atcgctgtta atactattac cgttttctga ttcactgtta atacacgtta atacctcttt 4081 atcgctgtta atactattac cgttttctga ttcactgtta atacacgtta gttccgtgtt 4141 aataatttgg ttgttatttt ccatgatctg gtttatctta tctactatct cagttatatc 4201 aattaattta attgtatcga tatttgtgaa gtcaatgtct ggaaacaact tgaataatat 4261 ttctaaaata ttgatagctt tttttgttgg gaaatcattg tcatctaata atcctctatt 4321 gtgtgcaaac tttctttctc tgtctaaatc cttagaattg ctaactttgg cttttaaaaa 4381 tcctaacaat gccttaacat cttgtttgaa aatagtatct atttttatgt ttaagtgttc 4441 aaattcatct gaattgttgg ataaattatt tatactacta tctacatagt tatccatact 4501 taatcacctc ttaggcgtta gttttaattt ttgacttggg ggtagggaga taccctttaa 4561 agggtctccc tacctttccc aggaaattca ataaagttat tttagtagaa atacaatagt 4621 ggtatagtta ggggtttaat tctatttttc tcattaaagt ataaatacct aacggaattc 4681 gctgttttta ttttttatta tata //