LOCUS NC_013358 4551 bp DNA circular BCT 03-NOV-2009 DEFINITION Zymomonas mobilis subsp. mobilis NCIB 11163 plasmid pZA1003, complete sequence. ACCESSION NC_013358 VERSION NC_013358.1 GI:260738835 DBLINK Project:41019 KEYWORDS . SOURCE Zymomonas mobilis subsp. mobilis NCIMB 11163 ORGANISM Zymomonas mobilis subsp. mobilis NCIMB 11163 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas. REFERENCE 1 (bases 1 to 4551) AUTHORS Kouvelis,V.N., Saunders,E., Brettin,T.S., Bruce,D., Detter,C., Han,C., Typas,M.A. and Pappas,K.M. TITLE Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163 JOURNAL J. Bacteriol. 191 (22), 7140-7141 (2009) PUBMED 19767433 REFERENCE 2 (bases 1 to 4551) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (07-OCT-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4551) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Kouvelis,V., Typas,M.A. and Pappas,K.M. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (01-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. URL -- http://www.jgi.doe.gov JGI Project ID: 4084589 Source DNA available from Katherine M. Pappas (kmpappas@biol.uoa.gr) Organism available from NCIMB: NCIMB 11163 Contacts: Katherine M. Pappas (kmpappas@biol.uoa.gr) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4551 /organism="Zymomonas mobilis subsp. mobilis NCIMB 11163" /mol_type="genomic DNA" /strain="NCIB 11163" /db_xref="taxon:622759" /plasmid="pZA1003" gene complement(92..1543) /locus_tag="Za10_1910" /db_xref="GeneID:8470636" CDS complement(92..1543) /locus_tag="Za10_1910" /inference="protein motif:PFAM:PF03432" /note="PFAM: Relaxase/mobilization nuclease family protein; KEGG: pna:Pnap_5006 relaxase/mobilization nuclease family protein" /codon_start=1 /transl_table=11 /product="Relaxase/mobilization nuclease family protein" /protein_id="YP_003227017.1" /db_xref="GI:260738836" /db_xref="InterPro:IPR005094" /db_xref="GeneID:8470636" /translation="MIIGFSKHGQGKAAPAIKYLLDQHREGRENHIPEVVRGNPDLTA SIIDSLTFKHHYTSGVLSFAAEDHVSAEQEKDIINDFEKLAFAGLQADQFNILWVRHS HAGHHELHFITPRIELSSKKSFNIKPPGKNTQKEFDDLRSAINAKYGFADPEDPMRAR NVKTPSYELKIARNVLREQKAPSEDIRQLIDSLLTERAVQGLIHDRKTLLTNVEELGF EVTRAGKNYITVKDPESSKRFRLKGQLYEQDFTSSRTIETAAAKRTRDYSRPDSTAAR QFEEQVKLHIRKRAEFNRKRYRATEPELRMEIPPISLADTSRDQHHDIVWPALGRRRD NQALYPPDQSFAGGKSRDGSDRRTAQQSRWEDAIQPLRRKRKALHQSKHTRDLRDNQR LSDRERTEIDNDGIGTGFTERLGKFTAEIRSTTEKFITRAKRITADVRNYLNREYLFT TASRNLGRAIEQFSQMKTLSRKLQKRRGRSRSR" gene complement(1540..1887) /locus_tag="Za10_1911" /db_xref="GeneID:8470631" CDS complement(1540..1887) /locus_tag="Za10_1911" /inference="similar to AA sequence:KEGG:Arad_12040" /note="KEGG: ara:Arad_12040 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_003227018.1" /db_xref="GI:260738837" /db_xref="GeneID:8470631" /translation="MLIYSFLILLCYHDPMNSSNIRDHLLRIRLSQAELCQLEALASK AGITKSELVRDHIGQTKINNDPANRERLVILGRINANLQQIARWVHETKTPIETTAVL SHLIALEREISEL" gene complement(1973..2248) /locus_tag="Za10_1912" /db_xref="GeneID:8470632" CDS complement(1973..2248) /locus_tag="Za10_1912" /inference="protein motif:TFAM:TIGR02385" /note="TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: vei:Veis_4998 addiction module antitoxin" /codon_start=1 /transl_table=11 /product="addiction module toxin, RelE/StbE family" /protein_id="YP_003227019.1" /db_xref="GI:260738838" /db_xref="InterPro:IPR004386" /db_xref="InterPro:IPR007712" /db_xref="InterPro:IPR012753" /db_xref="GeneID:8470632" /translation="MTLKVAYSGQFKRDLKTIQKRGKDITKLKILMCLLVENRPLPAF YLDHPLRGKWRSFRDAHIEPDWLLIYKKDSQEIRFERTGRHTDLFQQ" gene complement(2245..2505) /locus_tag="Za10_1913" /db_xref="GeneID:8470633" CDS complement(2245..2505) /locus_tag="Za10_1913" /inference="protein motif:TFAM:TIGR02384" /note="TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: yen:YE1928 DinJ-like protein" /codon_start=1 /transl_table=11 /product="addiction module antitoxin, RelB/DinJ family" /protein_id="YP_003227020.1" /db_xref="GI:260738839" /db_xref="InterPro:IPR000985" /db_xref="InterPro:IPR007337" /db_xref="GeneID:8470633" /translation="MNHTAFVRARIDETLKDEASKILATMGLTVSDFVRIGLTKVVSE RGLPFEMRVPNKLTADTLQKSLKGEDLHRFDSIDELFQDLEI" gene complement(2629..2976) /locus_tag="Za10_1914" /db_xref="GeneID:8470634" CDS complement(2629..2976) /locus_tag="Za10_1914" /inference="protein motif:PFAM:PF04471" /note="PFAM: restriction endonuclease; KEGG: met:M446_4420 restriction endonuclease" /codon_start=1 /transl_table=11 /product="restriction endonuclease" /protein_id="YP_003227021.1" /db_xref="GI:260738840" /db_xref="InterPro:IPR007560" /db_xref="GeneID:8470634" /translation="MNPFDYEQYCALLLQNGGWDAQATQKSGDQGADVIATKGRIKII IQCKLYNTTVGNSAVQQVYTAKKFQEAQAAVVVTNSTFSKSARQAAAATGVYLTHHIQ LVATANKIFSEKN" gene complement(3388..4368) /locus_tag="Za10_1915" /db_xref="GeneID:8470635" CDS complement(3388..4368) /locus_tag="Za10_1915" /inference="protein motif:PFAM:PF01051" /note="PFAM: initiator RepB protein; KEGG: pzu:PHZ_p0001 replication initiator protein" /codon_start=1 /transl_table=11 /product="initiator RepB protein" /protein_id="YP_003227022.1" /db_xref="GI:260738841" /db_xref="InterPro:IPR000525" /db_xref="GeneID:8470635" /translation="MRKTLQIIKDRAGNKDQNLHAGEIIDGHFSDLKNPPSLAALKLY ELLIKYAAYNIDKNIWHNISVSEMQKIKGIKNYNSTELTQLLKELRAVVMEYRAKDRT IITGLLDIAAVISNPDTGYLEIQWKFGESFRDLIAKSEYWAIVDYRTTLEMTSRYSLR LYEILALRINLKHKNSDTFTLAELRGKLGVPEGKLKRWSDLRDKAINVAVKEINQRTT FAVTAQPKKMGRSVQAVEFKWERKEIKLPQSIPLKTSKSIVFPLDGSIRYTQWEDIAR KNLPKPLPDLDMVAQQFRKWLKNKNISSNSINVLSIFKKFCEKYRIEFNN" ORIGIN 1 ataagttcag ggctttttta tcggaaatcg ccaactaaaa tcgactatca gaaagataaa 61 aaacttttcg gaattagcgt ccttttcaag tttatcgaga gcgagaacga cctctccgtt 121 tttgtagctt tcgacttaag gttttcatct gggaaaactg ttcaatcgct cgaccaagat 181 ttctacttgc tgtcgtaaat aagtattctc ggttgaggta gtttcgaaca tctgccgtaa 241 ttcgctttgc gcgtgtaata aacttttctg ttgttgatcg aatctctgct gtaaattttc 301 caaggcgttc agtaaaacct gttccaattc cgtcattgtc tatttccgtt ctttcacgat 361 cagataatct ctggttatcc cgaaggtctc tcgtgtgttt actctgatgc aaagcctttc 421 tttttctccg caatggctga attgcatctt cccacctgct ttgttgagct gttcgacggt 481 cacttccatc tctgcttttt cctcctgcaa agctttgatc tggtgggtat agagcttgat 541 tatcccttct gcgcccaaga gcaggccaaa caatatcatg atgctggtca cgactggtat 601 cagccagcga gataggagga atttccatcc taagctccgg ttcagtcgct cgatatcgtt 661 ttctattgaa ttcagctcgt tttcgaatgt ggagtttaac ttgttcctca aattgtctag 721 ctgctgttga gtcaggtcga gaataatctc ttgttctttt agctgctgct gtttcaatcg 781 ttcggctaga ggtaaagtct tgttcataga gttggccttt gagacgaaat cgttttgagc 841 tttcagggtc tttgacggta atataattct tgcctgcgcg agtaacttcg aagcctaact 901 cttcaacatt agtgagaaga gtttttctgt catgtatcag gccttggacg gctctttcag 961 ttaaaaggct atcaataagc tgtcttatgt cctcagaggg cgctttttgc tctctaagga 1021 cattcctagc gatttttagt tcatagctag gtgttttgac gtttctcgct ctcatcgggt 1081 cttctgggtc agcaaagcca tatttggcat tgatggcact ccgcaagtca tcaaattcct 1141 tttgggtatt cttcccgggg ggcttgatgt tgaaggactt cttggatgaa agttctatcc 1201 ttggagtgat gaaatgaagt tcatgatgac ccgcatgaga atggcgcacc caaaggatat 1261 taaactggtc tgcttgcagg ccagcaaaag ccagcttttc gaaatcgttg ataatatctt 1321 tttcctgctc ggcagaaaca tgatcttcgg cagcgaaaga aagaactccg ctagtatagt 1381 gatgtttgaa agtcaggctg tcgataatgg atgcggttaa gtctggatta cctctcacca 1441 cttcaggaat atgattttct ctgccctctc tgtgctgatc gagcaggtat tttatggctg 1501 gagcagcttt gccctgtcca tgttttgaga agccgataat cataattctg atatctccct 1561 ttcaagggct atcagatggc taagaacagc tgttgtctct atcggtgttt tggtttcgtg 1621 aacccatcta gcgatctgtt ggagattagc gttaatgcga ccaaggataa ctaagcgttc 1681 tctattggct gggtcattat tgatttttgt ttgtccgata tgatcgcgga ctaattcgga 1741 ctttgtgata cctgccttac tggcgagagc ctccagttgg caaagctctg cttgagataa 1801 gcggattcta agcaggtgat cacggatatt tgagctattc atagggtcat gatagcatag 1861 aagtataaga aaagaataaa ttaacaaggc tactccgtgt tgctacgcaa caacggagcc 1921 ttgccggggg ttccccccag acccccttaa ttaaaacata taaaaaatga ttttattgtt 1981 gaaagagatc tgtatgtctt cctgttcgtt caaatcggat ttcttgactg tcttttttat 2041 aaattagtaa ccaatctggt tctatatggg catcacgaaa actacgccat tttccacgca 2101 acggatgatc aagataaaaa gctggtaaag ggcgattttc aactagaaga cacatcaaaa 2161 ttttgagttt tgttatatcc ttacctcgtt tttggatagt tttaaggtca cgtttaaact 2221 ggccggaata ggcaaccttt aatgtcatat ctctaaatct tgaaacaatt catctattga 2281 atcgaagcga tgtaaatcct cgcctttgag gcttttttgt aaggtatctg ccgtcagttt 2341 attcgggaca cgcatttcaa agggcaagcc tctttcactc accacttttg ttaatccaat 2401 acgaacaaaa tcagagacgg taagtcccat tgttgccaga attttgctgg cctcatcttt 2461 taaggtctcg tcaattctcg cacgaacaaa tgctgtatga ttcatcattt atctccttcc 2521 atatttgtag ctcaaataag ctacaatatc tataaaaatg aaattggctt tagctattag 2581 aaggaaagat taaagctata aaaatttttc taggattaga aactattttt aatttttttc 2641 tgaaaatatt ttatttgcag tagcaactaa ttgtatatga tgtgtcaaat atacaccagt 2701 tgccgctgct gcttgtctag ctgactttga aaaagttgag tttgttacta caacagcagc 2761 ttgtgcttct tgaaactttt tcgctgtata tacttgttga acagcactgt ttcctacagt 2821 tgtattatat agcttacact gaataatgat ttttattcta cctttggtag caatcacatc 2881 agctccttga tctccgcttt tttgtgttgc ttgcgcatcc caacctccat tttgtaataa 2941 aagtgcgcaa tattgctcat aatcaaaagg gttcatttgt tcgttaaata tcaatggatt 3001 gcttttgtat tctttaggca aaatcgatat tttaagcgga atagatgcaa catcatcaat 3061 taatatctga gcttctgttc ttaataaata tatacttttt ttatttttta tattgctgaa 3121 tataattgga tctattcttg tttttataaa ataatttatt tcttttaccc aatcatcttc 3181 gataatggat ccgtattgat cttttattac tttttgattt ttggatattt gaagatttgt 3241 tttctgtcta tttatttcaa atgtaatttt tttaaagtat ctttatattt ttttttattg 3301 taaataatat aaaaaattat tccaaataaa gcagataata aatatttcat tttagagaac 3361 tctttctatg aataatagaa ttatatttta attattaaat tctattctgt atttttcaca 3421 aaatttctta aaaatggaca aaacattaat actgtttgat gaaatgtttt tattttttaa 3481 ccattttcta aattgttgtg ctaccatatc taaatcaggt aaaggcttag gaagattttt 3541 tcgtgcaata tcttcccatt gagtatatct aatacttcca tctaatggaa aaacaatgct 3601 tttagatgtt tttaatggta tactttgagg aagtttaatc tcttttcgtt cccatttaaa 3661 ttctacggct tgaacggatc ttcccatttt ttttggttgt gctgttacgg cgaaagtagt 3721 ccgttggtta atttctttta ccgcaacatt gatcgcttta tctcttaaat cagaccatct 3781 ttttaatttt ccttcaggaa ctcccagttt tcctctaagc tcggctaaag taaatgtatc 3841 tgaatttttg tgttttaaat ttattctaag agctaatatt tcatataaac gaagggaata 3901 tcggctcgtc atctctaacg ttgttctata atcaacaatt gcccaatatt ctgacttagc 3961 tattaaatct ctaaaacttt ctccaaattt ccattgtatc tctagatatc ctgtgtctgg 4021 gttagatatg accgcagcaa tatctaaaag accagtaata atagttctat cttttgctct 4081 atattccata acaacagctc taagttcttt taataattga gttagctctg ttgagttata 4141 gttctttatt cctttgattt tttgcatttc tgatacagaa atattatgcc atatattttt 4201 atctatatta tatgctgcgt atttaataag caactcatag agttttagtg cagctaggct 4261 aggcggattt ttaaggtctg aaaaatgtcc atctataatt tcacctgcat gtaaattttg 4321 atctttattg ccggctctat ctttaattat ttgtagtgtt tttctcatta caactttatt 4381 aaccacttaa tatatttttt gaagtggttt ttcactcccc aaaagtggtt tttcactccc 4441 caaaagtggt ttttcactcc ccaaaagtgg tttttaaagt cgtaaggcat tgattttttt 4501 gaataaaaaa gccctgaact tattgaactt attgaaatat aggaaagttc a //