LOCUS NC_012657 9953 bp DNA circular BCT 08-MAY-2009 DEFINITION Clostridium botulinum Ba4 str. 657 plasmid pCLJ2, complete sequence. ACCESSION NC_012657 VERSION NC_012657.1 GI:229599876 DBLINK Project:29077 KEYWORDS . SOURCE Clostridium botulinum Ba4 str. 657 ORGANISM Clostridium botulinum Ba4 str. 657 Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. REFERENCE 1 (bases 1 to 9953) AUTHORS Smith,T.J., Hill,K.K., Foley,B.T., Detter,J.C., Munk,A.C., Bruce,D.C., Doggett,N.A., Smith,L.A., Marks,J.D., Xie,G. and Brettin,T.S. TITLE Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids JOURNAL PLoS ONE 2 (12), E1271 (2007) PUBMED 18060065 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 9953) AUTHORS Shrivastava,S., Brown,J.L., Bruce,D., Detter,C., Munk,C., Smith,L.A., Smith,T.J., Sutton,G. and Brettin,T.S. TITLE Genome sequence of Clostridium botulinum Ba4 strain 657 Plasmid pCLJ2 JOURNAL Unpublished REFERENCE 3 (bases 1 to 9953) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (03-MAY-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 9953) AUTHORS Shrivastava,S., Brown,J.L., Bruce,D., Detter,C., Munk,C., Smith,L.A., Smith,T.J., Sutton,G. and Brettin,T.S. TITLE Direct Submission JOURNAL Submitted (15-MAY-2008) Los Alamos National Laboratory, Los Alamos, NM, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001082. The authors wish to acknowledge the Intelligence Technology Innovation Center for funding the sequencing and the NIH/NIAID for funding the annotation at the Pathema Bioinformatics Resource Center. For more information about this strain contact Theresa Smith, Integrated Toxicology, United States Army Medical Institute of Infectious Diseases, theresa.smith@amedd.army.mil. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..9953 /organism="Clostridium botulinum Ba4 str. 657" /mol_type="genomic DNA" /strain="657" /db_xref="taxon:515621" /plasmid="pCLJ2" /note="bivalent Ba strain" gene complement(2038..2157) /locus_tag="CLJ_A0001" /db_xref="GeneID:7847858" CDS complement(2038..2157) /locus_tag="CLJ_A0001" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002860867.1" /db_xref="GI:229599880" /db_xref="GeneID:7847858" /translation="MCCAFFSVGLLYRGNDFVSLVDRPGVVYGVDWGSQLHIP" gene complement(2192..2377) /locus_tag="CLJ_A0002" /db_xref="GeneID:7847856" CDS complement(2192..2377) /locus_tag="CLJ_A0002" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_002860868.1" /db_xref="GI:229599877" /db_xref="GeneID:7847856" /translation="MNNIKRTPRNEAGLTPRQQEKANKEKLIKELVSKGLNKSQVANE LGVNRSTITRSYGYLFI" gene complement(4152..4724) /locus_tag="CLJ_A0003" /db_xref="GeneID:7847853" CDS complement(4152..4724) /locus_tag="CLJ_A0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002860869.1" /db_xref="GI:229599878" /db_xref="GeneID:7847853" /translation="MVHSLNIEFDKLSIKEQVEFINRELQKDKKISVTKLCKKYGINK STVISRFTTKGYKYNAELRVYTKDIVIQNNNKSINNIKHEQIEVSKKNNLMELQDIKE LKELLEMKEQLKEIIQEYNKNKNIIDVPEEPELKVDKDKFEGELKGRLIKVYNNINND WIKFCKKNNQFKMQDLYSLALLEFMEKYKR" gene complement(5110..5802) /locus_tag="CLJ_A0004" /db_xref="GeneID:7847854" CDS complement(5110..5802) /locus_tag="CLJ_A0004" /note="identified by match to protein family HMM PF00239" /codon_start=1 /transl_table=11 /product="putative resolvase" /protein_id="YP_002860870.1" /db_xref="GI:229599882" /db_xref="GeneID:7847854" /translation="MNKIYGYCRISTNKQSIERQQRNILALYPSAIIINEVFTGTKIY ERKEFNKLLKQIKKGDMIVFDSVSRMSRNSEEGFKLYEELFNKGIELIFIKEQHINTS TYKKALTNNIALTGTNVDFILEGVNKYLLALAKEQIKIAFNQSEKEVTDLQQRTREGI ETARLNGKQIGQKEGIKLTTKKSITAKKDIIKYSKDFQGTLRDTEVIKLLGIARNTYY KYKKEIIEREGK" gene 7220..8173 /locus_tag="CLJ_A0005" /db_xref="GeneID:7847857" CDS 7220..8173 /locus_tag="CLJ_A0005" /note="identified by match to protein family HMM PF07968" /codon_start=1 /transl_table=11 /product="alpha-hemolysin" /protein_id="YP_002860871.1" /db_xref="GI:229599879" /db_xref="GeneID:7847857" /translation="MEKQSLSYGNDNVQTSIIGGDNESVQLSTSNGKSIASTTKDGVK TYTSSKIISSNGFKISLEGTFIDDPKDDKLTLLLSTDGSFMPSGMEKTGDYWSGQMIW PSTFQLRMGLSENKFKKTAILKVAPINSIETIDVSETMGYSVGGSIEVTGSSTGGSGG SSGNANYSVSKTISYKQPDYQTILKTNDSLDVLWNITYNRNKEGYDRDSWNTLYGNQL FMRSRNSNTGIENLTLNNDLSSLITGGFSPKGIIAIKTGREHISGTSNTDLLTVKLTR IMDKYDLIWATSHWKGINTKDYTNKFLSSSIWIDWTNYRLS" gene complement(8721..9359) /locus_tag="CLJ_A0006" /db_xref="GeneID:7847855" CDS complement(8721..9359) /locus_tag="CLJ_A0006" /note="identified by match to protein family HMM PF00589" /codon_start=1 /transl_table=11 /product="integrase/recombinase XerD" /protein_id="YP_002860872.1" /db_xref="GI:229599881" /db_xref="GeneID:7847855" /translation="MKAKSINRKLTSINQLFKSININYGVKCKRMKEQKQTFLDDVLT RDEIEKMLNKCGTNIRDKAIIMTLYKTGLRVSELLQLRIRDIRKKSIEIEGKGGKYRY IIVPKELKEIWLQYLKVRKPVETDKLFVGTNGEMHRHNINRIIKKYAVQARITKGKAH PHALRHSFCKALAIQNVGIEVIADLAGHEDLNTTRIYTRQTQKELREKIELI" ORIGIN 1 tttaccacta catattaaca attatattaa cataactcta tagctaagtt aaccttataa 61 ttttttatga ttttatgatg atttctttaa aatgctttta tattctttaa aattctatat 121 tgaataaaaa acaattgcat tttctcattt gaacgcattt ccaaataccc taaaatttac 181 attagtaaca tcaactaaaa aaacattact ctaaaagttt gtttgacaaa acaataacaa 241 attgtgtgaa aaaaatataa gtaaacaata aaattttaga agttcctaat ataacagagc 301 atactatttc ataaaacaga ctaatgttcg taatttataa ttgttctaat atatctaata 361 cttctttagt attaataatg tctaaatatg ctccatattt attttcatta atagatatag 421 atttgttaat gtcatgttgc caagctttta gcattgatac catagtaaat atatcttttt 481 gttcttgtga taaagaatcc atactatagc taccatagtc taacttttca atacatttca 541 tagctttatc tatgttaaga cctaaattac aacattcttc atatttactc actttagaat 601 cctcctaatt aatctaacta aaatataaat tttaaaacta aataagcatt ttattaaata 661 tagttaattt cattatacat aaagataata catatatata gctttaaata agcataagaa 721 cctatataac agttttaaaa taattgtttg atgattttat taaatatatt atttatagct 781 taaaaagctt cgtaagctat aaataatata tttaaaaaat taggagcggg gaaaaaacta 841 gctttaaagt aaaatctctt ttacaacact ttttgtatct aacaaaaact attcactata 901 tatatttaat agatttatct tttaatagat ttatctttta atagattaat attttgtttg 961 ggaaataaat ccgatagggt acggatttat ttccgactta ttaatttaag tatcctatta 1021 agtaaaattg taatactaat ctaattgtac ttataaaaat aataaaaaaa gagcataagg 1081 gaaatatgat actacttact aaatagtaag tagtaagtta gctgtgccaa ctatatttct 1141 atctaaaaaa atcttaaaaa agtgatatca ttttaagatt tttttaactc tgttttggct 1201 ctatttgaac tctgttttaa ctccatatga gttctatttg tctccatttt tactctaaat 1261 taactctatt tcaactctac acttataacc ctattatcaa tataaataat aaatatttta 1321 atgtactaaa cctagttata tcagtatcgc accatccgtt aatcaagaat aaagaaactt 1381 ctttcggagc taggtggctt tttagcacct ttttataata taaaaaatca aaaatgtttg 1441 gcggattcta taagtattaa tatagccatt agaaaaatac aaaattaata tctaaagcat 1501 tataaagttt cagacataaa ctaaatagaa tataagagat agtttaattt aatctaattt 1561 atttgaaatc catctcaagc ttatttaaaa cgtctgtaat ccattttcat aatctcactt 1621 ttgaatacaa gtattgacac ctgcttatat attgattaca cgctatttgt tttatagttt 1681 caatactttt aagttttgac accgttcacg gataggcatt aaggttatac ccctttatat 1741 acaaaggatt gaggatggca cttgagttcg tatcttatta tatttttaat gttttcatct 1801 attgttaggc tttattatca atgtaaaacc taatctaagc cttatttatc aatggtttta 1861 tgatattttt ttatatcttt ataaatccgc cataacatat agtattgcgg atttattttt 1921 ttggtgcata taatgtaaga attttttatt ttattaaaaa tccgcaacat cgactttttt 1981 gcggattttc ctaaaaggac actatatatt tatattgtta tttttatata gttcttttta 2041 gggtatgtgg agctgactac cccagtcaac cccatagacc acccctggtc tgtctactag 2101 actaacgaaa tcatttcctc tatagagtaa tccaacacta aaaaaagcac aacacataat 2161 tataaagagc atttcatgca acacattata attatataaa taaataacca taacttcgtg 2221 ttattgtact tctgtttact cctaattcgt tagctacttg acttttattt aaccctttac 2281 ttactaactc tttaattaat ttttctttat tagctttttc ctgctgtctt ggtgttaatc 2341 ccgcttcatt ccttggagtt ctttttatat tattcattct atactttagt atagcttaac 2401 actagctttc acacctcctc aattcctaag tactaatttc ttcaatctcc aatgtactca 2461 aattatttaa atttacaact tgactttcaa tctatattaa tttaccttag gggtttgaac 2521 aggaaacggc tactccctcc ctcctaattt ccaaaattaa taaactttga aaattaaaag 2581 agtgagatac ttatttttta cctctgtgga atcacaggta tccgtatcac accgtcacag 2641 ccttacaact gcaaccaact attcaaagac ttttgtctta actcgctcat tagtggcatt 2701 atcaagattt tagttgctcc ctcaactctt ttaagagttc caaaagtata cttatgtatt 2761 catatactta ctacgttatc cttgttaatg agttttttgc cctcttccat tgtaccaacc 2821 aacaacttca ccgagggcta ctatcctttc agctttatag cttaataggg ttgtgcatcc 2881 caagttcatg gggaattatt ttaacgtgat tttttctcaa cacgtgtttg ccttgataac 2941 ggtcttttcc atcatttttt tttaaacttg tccaaatttt aattatttat ttataacaaa 3001 aatttattaa aattattttt atctctaaca tgtagcggta gttaacgttc tatacaatat 3061 caaatacaca acgtcttaat atttctaaca ctaaaaaagc acctcttaag gttctaccct 3121 taaaaagtgc ttgaaatatc tctataatta atatataatc tattctatat tgaatagtaa 3181 ttataaagtt ctctaacttt tgctttggta gtgcgaatac cttagtaact ggcttatatt 3241 agtgggtgcg aaccattaat atgagagttg aggacttttt atttggtttt aaaaagcttg 3301 tttatatttt accttttttt ttaccacatt tcaacatttt ttatttttaa ttaaaacttt 3361 atgatattat attaccacat aatctgactt caacgaatct aatttatgaa atatgtaaat 3421 aaaatattta tatattttaa tttatttttc taaaatcaat gtatccttca tcaaattgaa 3481 aataaaaact atcatttctt tcaatattta aaaaagctac ttctttttta tctaaaaata 3541 attttaaagt tatttcctcc attgacctat ccaacaaaat tttaaaatca tcaaaataaa 3601 tatttgctaa actaactcct atccatgcat actcatatgt agatttttgt aataattctt 3661 tcatttctaa aaacatacct tttaatttaa aaaaatcttc ttgaaagttc tcttttgtca 3721 atgtaactat cataacaatt ataccccctt attaacctta caaggttatt atataacttt 3781 atatagttaa aagtcaatgc gttttatata aatatgttat aatatatagt aattattcgc 3841 tttggagggt taatataatg ataaaatgta atctaagaat gtttatggct aaagataaaa 3901 tagatacagt aaccgaactt atgtataaga gtggtctaag tagaaatgca ataaatagaa 3961 tatacaaaga aaatgctatt gaaaaagcag atttagaaac acttataact ttatgtgata 4021 ctttcaaatg taaattatca gatttaattg aatatgatcc aaacaaataa gcactttaaa 4081 attaaagtgc tttattatgt tttaaataat attattagtt gctacttctt caatattttc 4141 atgactaaac tctatctttt atatttttcc ataaattcta ataaagcaag agaatatagg 4201 tcttgcattt taaactgatt atttttctta caaaatttaa tccaatcgtt attaatatta 4261 ttatagacct ttattaatct gccctttaat tctccctcaa atttatcctt atcaactttt 4321 aattctggct cttctggcac atctattata tttttatttt tgttatattc ttgtataatc 4381 tcttttaatt gttctttcat ctctaataat tcttttaact ctttaatatc ttgtaattcc 4441 attaaattat tttttttaga tacttcaatt tgttcatgtt ttatattatt tatactttta 4501 ttattatttt gtataactat atcttttgta taaactctta attctgcatt atatttataa 4561 ccttttgttg taaacctact tataactgtg cttttattta tgccatattt tttacataat 4621 tttgtaacac ttattttttt atctttttgt aattctctat taataaattc cacctgttct 4681 tttatgctta acttatcaaa ctctatattc aagctatgca ccaccttata caatataata 4741 agttatatat aacttatata taacttatag ttttataata gtttaattta tataaaaaat 4801 atagttatat ataagttatt attatataaa ttctatacat ctgtataatt tccttttatt 4861 tactatttta atatatccat attatataaa aaataactat gttatgtaac tagaagtatt 4921 atacttgata ctccatataa taaatgtaat ttcatccctt ctccatctcc aatatttata 4981 tagataattt aataatacac gcattattct agcttttaaa aaagttaagc gtaagttttt 5041 acttcttaat tttaaattct cttagaatag cttaaaatga gttttaaaag cataaaaaaa 5101 agaaggtatt tatttaccct ctctttcgat tatttctttt ttatatttgt agtatgtatt 5161 tcttgcaatt cctaaaagtt ttattacttc tgtatctctt aaagtacctt gaaaatcttt 5221 tgaatatttt attatatctt ttttagccgt aatacttttt ttagttgtaa gtttaatacc 5281 ttctttttgt cctatttgct taccgtttaa tctagctgtt tctattcctt ctcgtgtacg 5341 ttgttgcaaa tccgtaactt ccttctctga ctgattaaat gctattttaa tttgctcttt 5401 tgcaagtgct aataaatatt tatttacacc ttctaaaata aaatctacat tagttccagt 5461 taatgctata ttatttgtaa gtgctttttt atatgttgat gtgtttatgt gttgctcttt 5521 aataaatatt aactctatac ccttattaaa taattcttca tatagcttaa atccttcttc 5581 actattccta ctcatacgac ttacactatc aaatacaatc atatcacctt ttttaatttg 5641 ctttaataac ttgttaaact ctttacgctc ataaatctta gtacctgtaa acacttcatt 5701 tattattatt gcacttggat ataatgctaa tatatttctt tgctgacgtt ctatgctctg 5761 cttatttgta cttattctac aatatccata aatcttattc atgttatcac ctcataatac 5821 atttatagta tcaaatctta cgaccgttac ttttgatact ataaatatat catatttttt 5881 atattaagtc aatagtttta atactatttt tgtatacgtt atttttgata ctattttata 5941 atataaatat tattgtttga atcatattct atgtaaactt tataataaaa ataaatatct 6001 ttactttaaa caatacgatt cttatttttt gaagtaataa ttattatagt aacttatatt 6061 taataaatag ctgacccttt taatggttct ggtttcctta ttataaattg catataaatt 6121 caaatatata tatattgtgt aaaaattaat ataaaagtta gataaattgc attaaattat 6181 aaaattacat aaaaagtatt aaaatagtaa gttaataata tgcaatacac ctattctttt 6241 atgtttaact taaaattaac atgttattat ataaattata ggaaatgagg tgatacatat 6301 aagaaaaaaa tatagaaaaa aaatccttca agtactcatt taaaacctat tttacaaatt 6361 ccccaacctg taaaataagg cattgatgaa ggcttgaaag ctttttcaaa aaaattactt 6421 gttatatatt atttatatat tatttatcta aataaggatt cttttgccct tattttttat 6481 aatttacaca tactatatat tttaatcata atgtaacata ttaaatatat tctatcaaat 6541 agtaaatatt ttaatttaaa gtaagtttat tggttaatat aaagctacgt ttatattaac 6601 ttacatttta acatttgtat acttataatt gatataaata ttctaagaaa accaataaat 6661 ataaatatct ctagtgacat agtatttatt attatttgct taaatattct tagttaattg 6721 agtggctatg ttactcttag agctgtagta tacaactctt tatcctgcaa tatctaaaat 6781 attattaatt actccatatt tcattttatt ttctaaaaaa tgaatatcta atttattata 6841 aataaaaagt cataggaaaa actatgactt tatctttgca tttgaaagta aagacaggtg 6901 gtaatctgta tctcctaccg cttaatacgt ggtggcggct acctgttccg ccctcaatta 6961 ctttcattaa tattctatgt tatttatatc tttattatat ccaataaata atattattac 7021 aactactatt tataaacttt aaatgcatct ttaaaaaaaa gaagaaaata tagagttgga 7081 agacatacta gaattactat ctgaagacat ttccgaaaga gttaaaaata aaataaaaga 7141 attataataa tgcattattt tagtttttat atcatatata tatttaatat attaatatta 7201 tttaatagga ggatgtttta tggaaaaaca atctttaagt tacggtaatg acaatgttca 7261 aacttccatt attggtggtg ataatgaaag tgtacaatta agtacttcta atggtaaaag 7321 tattgctagt actactaaag atggtgttaa aacttacacc tcaagtaaaa tcatttctag 7381 taatgggttt aaaatttcac ttgaaggaac atttattgat gatccaaaag atgataagtt 7441 aacactgtta ttgtctacag atggttcttt tatgccatcc ggtatggaaa aaacaggaga 7501 ttattggtca ggacaaatga tatggccttc aacatttcaa ttaagaatgg gtttatcaga 7561 aaacaagttc aaaaaaacag ctattctaaa ggtagcacct ataaattcaa tagaaactat 7621 agatgtatca gaaacaatgg gatattctgt gggaggttca atagaagtaa caggatcaag 7681 tactggaggt tctggaggaa gcagtggaaa cgcaaattat agtgtttcaa aaactatatc 7741 ctataaacaa ccagattatc aaactatatt aaaaacaaat gatagtttag atgtattatg 7801 gaatataacg tataatagaa ataaagaagg ttatgacaga gatagctgga atactttata 7861 tggaaatcaa ttgttcatga gaagcagaaa ttctaataca ggaattgaaa atttaacttt 7921 gaataatgat ttatcatcac taataacagg aggattttca cctaaaggaa taatagctat 7981 aaaaacagga cgagagcata ttagtggtac aagtaataca gacctactaa cagttaaatt 8041 aacaagaatt atggataaat atgatttaat ttgggcaact agtcattgga aaggtataaa 8101 tactaaagat tatacaaaca aatttctttc ttcaagcatt tggatagatt ggacaaatta 8161 taggttatct taatctttca tgttagtatt ttttattatt tttaaaaaat actaacgtga 8221 aagatataat tagtcaaaaa aacaatgatt ataattactg tttttatagt cgttgttttt 8281 ttgtgttatt gacagaaaaa tagatgttct ttaaatttag tcaaattatt tttagctata 8341 tagtaaggct taagaaaaaa tttataaaaa ccccttgtca attcattgag taaattttta 8401 taaatagttg ctcaaaactt ttaagattta aatcaaacgt ttctataact tgtttagtta 8461 aatgtccaac tgttttatgc tttttcatct aaatatattc tccttattat ctcttaaatt 8521 cgtatctatc taaatacttt atatcataaa aaaggtaatt attcttttct tcaaacttaa 8581 cttaaatatt ttatattctt tcaagttcgg atttaaatcc cgaacaaaaa taactctact 8641 aatatatcct ttgtatcctt ctactaatac ataatcttat tattaattat cttatagcaa 8701 atatttattt tagtatatat ctatattaat tctatctttt cccttagttc cttttgtgtt 8761 tgtcttgtat atatcctggt tgtatttaaa tcttcatgtc ctgctaaatc tgctataact 8821 tcgattccta cattttggat tgctaacgct ttacaaaatg aatgacgtaa agcatggggg 8881 tgtgcttttc cttttgttat tctcgcttgt actgcatatt tttttataat tctatttata 8941 ttatgcctat gcatctcccc atttgtccct acaaatagtt tatctgtttc tactggcttt 9001 ctaactttta aatattgtag ccatatttct tttaactctt taggaactat tatatatctg 9061 tatttacccc cttttccttc tatttctatt gactttttcc ttatatctcg tattcttaat 9121 tgtaataatt ccgaaactct taatcctgtt ttatataagg tcattattat tgctttatct 9181 cttatattag ttccacattt atttaacatt ttttctattt catctcttgt caatacatca 9241 tcaagaaacg tttgcttttg ctctttcatt cttttacatt taacaccata attaatatta 9301 atagatttaa ataattgatt aatagaagtc aatttcctat taattgactt tgctttcaat 9361 ccctctctaa ataaatattt tttatatgat tctatatcgc tagatgttaa tgtattaatt 9421 tctttttctt taaaatctaa atactttaaa aactgtctta aatctattaa ataattttct 9481 attgttttaa atcttttatc tttttctatg ctaaatatta taaaaccttt taatatatct 9541 tgatgttcta agcatacttt ttttaatatt tttacatata cttctatttc ttcattatta 9601 acaccaatat ttattaattt atttttaaaa tccttcgttt ttaatacctc ctatattatt 9661 ttatatacaa acgtgaatta cacttttatt tatattataa atacatatgt tctaatattc 9721 atggtacctg cattacataa aaatcgtata ttttatacac tttgcgttta taactaattt 9781 taataaatta tagtttctta cagcttcatg tcttatatta aatgttttaa taatactacc 9841 tatacccatt gatattacta tgtttaattt atatttattt tttaatataa ttgatggtaa 9901 aatattcata atatgtaaaa tcaataaccg atttttagta tattataata tca //