LOCUS NC_012471 2253793 bp DNA circular BCT 23-MAR-2010 DEFINITION Streptococcus equi subsp. equi 4047, complete genome. ACCESSION NC_012471 VERSION NC_012471.1 GI:225869487 DBLINK Project:30765 KEYWORDS complete genome. SOURCE Streptococcus equi subsp. equi 4047 ORGANISM Streptococcus equi subsp. equi 4047 Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. REFERENCE 1 (bases 1 to 2253793) AUTHORS Holden,M.T., Heather,Z., Paillot,R., Steward,K.F., Webb,K., Ainslie,F., Jourdan,T., Bason,N.C., Holroyd,N.E., Mungall,K., Quail,M.A., Sanders,M., Simmonds,M., Willey,D., Brooks,K., Aanensen,D.M., Spratt,B.G., Jolley,K.A., Maiden,M.C., Kehoe,M., Chanter,N., Bentley,S.D., Robinson,C., Maskell,D.J., Parkhill,J. and Waller,A.S. TITLE Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens JOURNAL PLoS Pathog. 5 (3), E1000346 (2009) PUBMED 19325880 REFERENCE 2 AUTHORS Holden,M.T.G., Mitchell,Z., Paillot,R., Steward,K., Webb,K., Ainslie,F., Maiden,M.C.J., Jolley,K.A., Robinson,C., Chanter,N., Kehoe,M., Maskell,D., Parkhill,J., Bentley,S.D. and Waller,A.S. TITLE Evidence for the evolution of host-restriction in the genome of Streptococcus equi subsp. equi, the causative agent of strangles JOURNAL Unpublished REFERENCE 3 (bases 1 to 2253793) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-MAR-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 2253793) AUTHORS Holden,M.T.G. TITLE Direct Submission JOURNAL Submitted (08-AUG-2008) Holden M.T.G., Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FM204883. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2253793 /organism="Streptococcus equi subsp. equi 4047" /mol_type="genomic DNA" /strain="4047" /isolation_source="horse with strangles" /db_xref="taxon:553482" /country="United Kingdom:New Forest" /collection_date="1990" gene 1..1353 /gene="dnaA" /locus_tag="SEQ_0001" /db_xref="GeneID:7696377" CDS 1..1353 /gene="dnaA" /locus_tag="SEQ_0001" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein" /protein_id="YP_002745435.1" /db_xref="GI:225869488" /db_xref="GeneID:7696377" /translation="MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLIKVDNHVATI FLDQMKELFWEKNLKDVILTAGFEVYNAQIAVDYVYEDDLMIEQQHQGQQGYTEQAFQ QLPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHL LNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFRNLDLLLIDDIQS LAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNIT PPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID TITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQDIVLARQ VAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIGQDESLRIEIETIKNKIK" misc_feature 331..993 /gene="dnaA" /locus_tag="SEQ_0001" /inference="protein motif:PFAM:PF00308" /note="HMMPfam hit to PF00308, Bacterial dnaA protein, score 6.5e-116" misc_feature 451..474 /gene="dnaA" /locus_tag="SEQ_0001" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 1075..1284 /gene="dnaA" /locus_tag="SEQ_0001" /inference="protein motif:PFAM:PF08299" /note="HMMPfam hit to PF08299, Bacterial dnaA protein helix-turn-helix, score 7.6e-36" misc_feature 1225..1284 /gene="dnaA" /locus_tag="SEQ_0001" /inference="protein motif:Prosite:PS01008" /note="PS01008 DnaA protein signature." gene 1510..2646 /locus_tag="SEQ_0002" /db_xref="GeneID:7697419" CDS 1510..2646 /locus_tag="SEQ_0002" /EC_number="2.7.7.7" /codon_start=1 /transl_table=11 /product="DNA polymerase III, beta chain" /protein_id="YP_002745436.1" /db_xref="GI:225869489" /db_xref="GeneID:7697419" /translation="MIQFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDIT LTGSNGQISIENTIPVSNENAGLLITSTGAVLLEASFFINIISSLPDVSLEFKEIEQH QVVLTSGKSEITLKGKDVSQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRP ILTGVHITLSQHKNFKAVATDSHRMSQRLITLEKTSADFDVVIPSKSLREFSAVFTDD IETVEVFFSASQMLFRSDYISFYTRLLEGNYPDTDRLLMKQFETEAVFNTQSLRHAME RAFLISNATQNGTVKLEIEANRISAHVNSPEVGKVNEDLDVVSQAGNDLTISFNPTYL IEALKAIKSETVKIHFLSPVRPFTLTPGDDEESFIQLITPVRTN" misc_feature 1513..1890 /locus_tag="SEQ_0002" /inference="protein motif:PFAM:PF00712" /note="HMMPfam hit to PF00712, DNA polymerase III beta subunit, N-te, score 1.9e-25" misc_feature 1915..2262 /locus_tag="SEQ_0002" /inference="protein motif:PFAM:PF02767" /note="HMMPfam hit to PF02767, DNA polymerase III beta subunit, cent, score 8e-32" misc_feature 2266..2637 /locus_tag="SEQ_0002" /inference="protein motif:PFAM:PF02768" /note="HMMPfam hit to PF02768, DNA polymerase III beta subunit, C-te, score 2.9e-30" gene 2724..2921 /locus_tag="SEQ_0003" /db_xref="GeneID:7697420" CDS 2724..2921 /locus_tag="SEQ_0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745437.1" /db_xref="GI:225869490" /db_xref="GeneID:7697420" /translation="MYQVGSLIEMKKPHACVIKETGKKANQWKITRVGADIKLQCTNC NHVIMLSRHDFERKMKKVLQP" misc_feature 2724..2915 /locus_tag="SEQ_0003" /inference="protein motif:PFAM:PF06107" /note="HMMPfam hit to PF06107, Bacterial protein of unknown function (DUF95, score 1.5e-44" gene 3045..3407 /locus_tag="SEQ_0004" /db_xref="GeneID:7697421" CDS 3045..3407 /locus_tag="SEQ_0004" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="YP_002745438.1" /db_xref="GI:225869491" /db_xref="GeneID:7697421" /translation="MTKFAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPD LENLVTLAAVLEVTLDELVTGKEPAIKVIKKTEKPMNVWEFLTEESKRPMRKGDLLML LLVVIVLLGVYFIVIHFS" misc_feature 3066..3230 /locus_tag="SEQ_0004" /inference="protein motif:PFAM:PF01381" /note="HMMPfam hit to PF01381, Helix-turn-helix, score 2.8e-18" misc_feature 3093..3158 /locus_tag="SEQ_0004" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 2169.000, SD 6.57 at aa 17-38, sequence LSQDALAEKLFISRQAISKWEN" misc_feature 3339..3395 /locus_tag="SEQ_0004" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0004 by TMHMM2.0 at aa 99-117" gene 3491..4606 /locus_tag="SEQ_0005" /db_xref="GeneID:7697422" CDS 3491..4606 /locus_tag="SEQ_0005" /codon_start=1 /transl_table=11 /product="GTP-binding protein" /protein_id="YP_002745439.1" /db_xref="GI:225869492" /db_xref="GeneID:7697422" /translation="MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMV EVPDERLQKLTELITPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVH VVRAFDDENVMREQGREDAFVDPLADIDTINLELILADLESINKRYARVEKMARTQKD KDSVAEFAVLEKIKPVLEEGKSARTISFTDDEQKIVRQLFLLTTKPVLYVANVDEDKV AIPDAIDYVKQIRDFAATENAEVVVISARAEEEISELDDEDRSEFLEAIGLTESGVDK LTRAAYHLLGLGTYFTAGEKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDD LIKYGSEKAVKEAGRLREEGKEYIVQDGDIMEFRFNV" misc_feature 3497..3946 /locus_tag="SEQ_0005" /inference="protein motif:PFAM:PF01926" /note="HMMPfam hit to PF01926, GTPase of unknown function, score 7.1e-35" misc_feature 3515..3538 /locus_tag="SEQ_0005" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 4349..4600 /locus_tag="SEQ_0005" /inference="protein motif:PFAM:PF06071" /note="HMMPfam hit to PF06071, Protein of unknown function (DUF933), score 2.9e-61" gene 4765..5334 /locus_tag="SEQ_0006" /db_xref="GeneID:7697423" CDS 4765..5334 /locus_tag="SEQ_0006" /EC_number="3.1.1.29" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="YP_002745440.1" /db_xref="GI:225869493" /db_xref="GeneID:7697423" /translation="MVKMIVGLGNPGSKHQQTKHNVGFMAVDRLVKDLDVSFTEDKTF KALIGSTFINQEKIYFVKPTTFMNNSGLAVRALLTYYNISTKDLMVIYDDLDMAVGKI RLRQKGSAGGHNGIKSIIAHIGTQEFDRVKIGIGRPSHGMSVINHVLGKFDTDDMITI NIALDKVDKAINYYLQEKSIEKTMQQFNG" misc_feature 4774..5328 /locus_tag="SEQ_0006" /inference="protein motif:PFAM:PF01195" /note="HMMPfam hit to PF01195, Peptidyl-tRNA hydrolase, score 4.3e-81" misc_feature 5089..5121 /locus_tag="SEQ_0006" /inference="protein motif:Prosite:PS01196" /note="PS01196 Peptidyl-tRNA hydrolase signature 2." gene 5337..8831 /locus_tag="SEQ_0007" /db_xref="GeneID:7697424" CDS 5337..8831 /locus_tag="SEQ_0007" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="YP_002745441.1" /db_xref="GI:225869494" /db_xref="GeneID:7697424" /translation="MDILELFNQNKSIQTWQCDVTSLKRQLVMGLSGSSKAAAIASAY LSFQGKLVVVTSTQNDMEKLAGDLSALLDEGSIFQFFADDTAAAEFIFSSMDKTISRI EALAFLSNPEARGILVISLAGLRILLPSPKTFQQGQIDLAVGVDTDLDNVVKKLVKIG YQRVAQVLSPGEFSRRGDILDVYEVTQDLPVRIEFFGDEIDGIRSFDIESQKSLQKKD STSIKPASDMIFEPEDFDRASHNLEKQLQLAKAEHKGYLEELLTVTKEGLKHKDIRKF QSLFYDNEWTILDYLPKGTPVFFDDFQKLVDRNAKFDLELAHLLTDDLQQGKSLPFLH YFADNYRELRHYKPATFFSNFHKGLGNIKFDKVYSLTQYAMQEFFNQFPLLIDEIKRY QKSGATVLLQVESHQAYERLAKSLEAYQCQLPLVSADAIVLHQAQIIIGHLAGGFYFA DEKLVLITEHEIYHKRLKRRARRTNMSNAERLKDYNELSKGDYVVHSVHGIGRFLGIE TINIQGVHRDYVTIQYQQSDRISLPVDQLESLSKYVSADGKEPKINKLNDGRFQKAKQ RVKKQVEDIADDLLKLYAERSQQKGFQFSPDDELQRAFEEDFAFVETDDQVRSIKEVK KDMESVRPMDRLLVGDVGFGKTEVAMRAAFKAIGDHKQVAILVPTTVLAQQHYENFRE RFENYPVEIAVLSRFRSKKEQSESLERLKKGQVDIIIGTHRLLSKDVIFSDLGLIVID EEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQ TYVLENNPGLIREAIIREMDRGGQVFYVYNKVDTVDKKVAELQELVPEASIGFVHGQM SDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRV GRSNRIAYAYLMYKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGA SQSGFIDSVGFDMYSQLLEQAIASKQGRALTRQKGNAEINLHIDAYLPSDYIKDERQK IDIYKRIREIDSRAAYSDLQDEIMDRFGDYPDQVAYLLEIGLLKYYLDTAFAELVEKR DHQVMVRFEVASLQYYLTQDYFEALSKTSLKARISEHQGKIEIIFDVRRQKDHVILEE LILFGETLGEIKSRKASS" misc_feature 6795..7088 /locus_tag="SEQ_0007" /inference="protein motif:PFAM:PF02559" /note="HMMPfam hit to PF02559, CarD-like/TRCF domain, score 1e-50" misc_feature 7161..7649 /locus_tag="SEQ_0007" /inference="protein motif:PFAM:PF04851" /note="HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 4.4e-06" misc_feature 7173..7667 /locus_tag="SEQ_0007" /inference="protein motif:PFAM:PF00270" /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 1.1e-40" misc_feature 7251..7274 /locus_tag="SEQ_0007" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 7857..8090 /locus_tag="SEQ_0007" /inference="protein motif:PFAM:PF00271" /note="HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 8.4e-19" misc_feature 8370..8696 /locus_tag="SEQ_0007" /inference="protein motif:PFAM:PF03461" /note="HMMPfam hit to PF03461, TRCF domain, score 6.1e-35" gene 8800..10311 /locus_tag="SEQ_0008" /db_xref="GeneID:7697425" CDS 8800..10311 /locus_tag="SEQ_0008" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein" /protein_id="YP_002745442.1" /db_xref="GI:225869495" /db_xref="GeneID:7697425" /translation="MRLNLEKLPHKTKQSSLLIVISGFMSKLLAASYRIPYQNLVGDR GFYAYQQIYPLLGIISALGLTALPNVIASMAQKKKQLQLAALFKLQCYTSFLLSGILV LSHKALASWMGAQQLAPSIVITAMVLLIVPFISFYRGLAQADMNMAPTALSQVLEQII RVAIIIVAALCYRVLGWTVYLTANVAAFGNLVASLVILAYLKRHSAYSLKSFLSGDTV AIRDLTSLGLPTLVFLLFSIYLLVFQLIDSLLVKNILVSSGLSEITAEMTKGVYDRGQ PLLQFGLIFSTALFTAYLPNLTVLFHIKRESYREQSQCFFEFIFYFSLTLTVGFISIL HLMNRALFEDNKGWLALVVYLMIIAVSSMIQFFHQKCFIEDHIKQSLLILLFGFLLKL GLTPILTYYYAIVGSSLSTLIPLLVVLLLYAVLADIDFKAIVNAKYGLALVIMLMCVL TSQYCLPLSGRLGALISLLVSSAVGLSSFLIACKKLGVFKEKLWSFLPFVKEK" sig_peptide 8800..8889 /locus_tag="SEQ_0008" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0008 by SignalP 2.0 HMM (Signal peptide probability 0.790) with cleavage site probability 0.706 between residues 30 and 31" misc_feature 8833..9702 /locus_tag="SEQ_0008" /inference="protein motif:PFAM:PF01943" /note="HMMPfam hit to PF01943, Polysaccharide biosynthesis protein, score 1e-05" misc_feature join(8848..8910,8953..9021,9040..9108,9151..9219, 9274..9342,9352..9405,9466..9534,9640..9708,9742..9810, 9838..9906,9943..10011,10024..10077,10096..10164, 10177..10245) /locus_tag="SEQ_0008" /inference="protein motif:TMHMM 2.0" /note="14 transmembrane helices predicted for SEQ0008 by TMHMM2.0 at aa 17-37, 52-74, 81-103, 118-140, 159-181, 185-202, 223-245, 281-303, 315-337, 347-369, 382-404, 409-426, 433-455 and 460-482" misc_feature 10216..10248 /locus_tag="SEQ_0008" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 10342..10614 /locus_tag="SEQ_0009" /db_xref="GeneID:7697426" CDS 10342..10614 /locus_tag="SEQ_0009" /codon_start=1 /transl_table=11 /product="S4 domain containing protein" /protein_id="YP_002745443.1" /db_xref="GI:225869496" /db_xref="GeneID:7697426" /translation="MRLDKYLKVSRLIKRRSVAKEVADKGRIKVNGILAKSSTDLKLN DQVEIRFGNKLLTVRVLDMKDSTKKEDAAKMYDIISETRISSDEEA" misc_feature 10342..10482 /locus_tag="SEQ_0009" /inference="protein motif:PFAM:PF01479" /note="HMMPfam hit to PF01479, S4 domain, score 2.3e-10" gene 10601..10972 /locus_tag="SEQ_0010" /db_xref="GeneID:7697427" CDS 10601..10972 /locus_tag="SEQ_0010" /codon_start=1 /transl_table=11 /product="septum formation initiator protein" /protein_id="YP_002745444.1" /db_xref="GI:225869497" /db_xref="GeneID:7697427" /translation="MKKPSIVQLNNHYINEENIKKRFEEEEIQKRNRFMGWILVSMMF LFILPTYNLVKGYVSLKKQGQQIITLEKEYRELEKKTKSEKQLAEQLKNDDFVKKYAR AKYYLSREGEVIYPTPGLLPK" misc_feature 10709..10762 /locus_tag="SEQ_0010" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0010 by TMHMM2.0 at aa 37-54" misc_feature 10724..10960 /locus_tag="SEQ_0010" /inference="protein motif:PFAM:PF04977" /note="HMMPfam hit to PF04977, Septum formation initiator, score 2.2e-21" gene 10982..11101 /locus_tag="SEQ_0011" /db_xref="GeneID:7697428" CDS 10982..11101 /locus_tag="SEQ_0011" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745445.1" /db_xref="GI:225869498" /db_xref="GeneID:7697428" /translation="MDNIVEKIETFLAFSDDKLAELEKENQELKKDHHRTEVK" gene 11114..12400 /locus_tag="SEQ_0012" /db_xref="GeneID:7697429" CDS 11114..12400 /locus_tag="SEQ_0012" /EC_number="3.5.2.6" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745446.1" /db_xref="GI:225869499" /db_xref="GeneID:7697429" /translation="MKKLLAAMLMTFFVTPLTVISTEKIPVFSEATRYHLSQDIVSST LYYSRIPTNPNVFEETVAYRDPELSVPKTMIAPDNRIVIKDVLLNKAAIPVFRLADDT YLEASRQIVYEDIMFEQTAVDLDFWTQKKMTIYAEPYVLGVKTIASDSEPGRKVHASK MAQTEHGTYYFIDHKGWVNQKELSPTDNRMLKVQEMLLQKYNKENYSIFVKQLNTQAS AGINADKQMYAASISKLATLYSVQKKLKSGSLSEGKSLKYIDEVNHFYGDYDPTGSGK ISKTADKKDYNVMELLKAVAQQSDNVATNILGYYLCNQYNQAFQSEIRALAGVDWDME KRLLSSHAAANLMEAIYYQKGQIISYLSQTAFDDQRISKNISVPVAHKIGDAYDYKHD VAIVYGDNPFILSVFTDKASYDDITAIADDVYSILK" sig_peptide 11114..11200 /locus_tag="SEQ_0012" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0012 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.801 between residues 29 and 30" misc_feature 11855..11878 /locus_tag="SEQ_0012" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 12397..13680 /locus_tag="SEQ_0013" /db_xref="GeneID:7697430" CDS 12397..13680 /locus_tag="SEQ_0013" /codon_start=1 /transl_table=11 /product="PP-loop family protein" /protein_id="YP_002745447.1" /db_xref="GI:225869500" /db_xref="GeneID:7697430" /translation="MTYQHIYNIIKKKAYFDAHQAVLIAVSGGVDSMNLLHFLHAFQA KLQIRIGIAHVNHKQRPESDDEEAYLRSWAKKHAIPIYVAYFQGAFSENAARHLRYQF FEEIMQQEHYSALVTAHHADDQAETILMRLIRGSRLRHLAGIREVQPFANGQLIRPFL TVSKAELPNPFHFEDHSNDSMAYFRNRVRHHYLPDFKRENPQATQSLIDLSAESRLLL QAFDDLTKGLEFHRLNCFLAQSAAVQFFLLQHYLETFPQLAIKKSQFDDLLHIIRRQK QGIYPIKNTYCLLIEKESFAIKKIIPKTDLNREFKMVSYGDSLNYRGYRFVFSGSLTD KGHDIAIPLYSLSPVTLRHRQAGDRLFLGEFSKKLRRLFIDGKFTSEQRQNAIVGEQA GVIIFVLVGDETYLRKASKHDIMLAKLYIDKLEKR" misc_feature 12457..13035 /locus_tag="SEQ_0013" /inference="protein motif:PFAM:PF01171" /note="HMMPfam hit to PF01171, PP-loop family, score 7e-85" misc_feature 12457..12525 /locus_tag="SEQ_0013" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0013 by TMHMM2.0 at aa 21-43" gene 13685..14227 /locus_tag="SEQ_0014" /db_xref="GeneID:7697431" CDS 13685..14227 /locus_tag="SEQ_0014" /EC_number="2.4.2.8" /codon_start=1 /transl_table=11 /product="hypoxanthine-guanine phosphoribosyltransferase" /protein_id="YP_002745448.1" /db_xref="GI:225869501" /db_xref="GeneID:7697431" /translation="MLEQDIQKILYSENDIIQRTKELGEQLTKDYHGKNPLMVGVLKG SVPFMAELMKHIDTHVEIDFMVVSSYNGGTTSSGEVKILKDVDTNIEGRDVIFVEDII DTGRTLKYLRDMFKYRKANSVKIITLFDKPEGRVVDIEADYVCYNVPNEFIVGFGLDY AENYRNLPYVGVLKEEVYSK" misc_feature 13697..14131 /locus_tag="SEQ_0014" /inference="protein motif:PFAM:PF00156" /note="HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 2.2e-33" gene 14249..16219 /locus_tag="SEQ_0015" /db_xref="GeneID:7697432" CDS 14249..16219 /locus_tag="SEQ_0015" /codon_start=1 /transl_table=11 /product="cell division protease FtsH" /protein_id="YP_002745449.1" /db_xref="GI:225869502" /db_xref="GeneID:7697432" /translation="MKNNKNNGFVKNSFIYILMIVIVVAGFQYYLRGTSTQSQQISYS KLIKHLKAGDIKSLSYQPSGSIVEVKGKYEKPQKVSIDTGLSFLGNSAATEVTEFTAL ILPSDSVLKEMTSVADKNGTDITVKQESSSGAWITFLMSFLPIVIFAAFMMMIMNQGG GARGAMSFGKNKARSQAKGDVKVRFTDVAGAEEEKQELVEVVDFLKNPKKYKALGARI PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKK AERAIIFIDEIDAVGRRRGAGMGGGNDEREQTLNQLLIEMDGFEGNESIIVIAATNRS DVLDPALLRPGRFDRKVLVGRPDVKGREAILHVHAKNKPLAEDVNLKVVAQQTPGFVG ADLENVLNEAALVAARRNKTKIDASDIDEAEDRVIAGPSKKDRSISQREREMVAYHEA GHTIVGLVLSNARVVHKVTIVPRGRAGGYMIALPKEDQMLLSKDDLKEQLAGLMGGRV AEEIIFNAQTTGASNDFEQATQMARAMVTEYGMSEKLGPVQYEGNHAMMPGQLSPEKS YSAQTAQMIDDEVRDLLNEARNKAADIINDHRETHKLIAEALLKYETLDAAQIKSIYE TGKMPNDPENDEAEVHALSYDEIKDKMTEAKE" misc_feature join(14285..14341,14648..14716) /locus_tag="SEQ_0015" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0015 by TMHMM2.0 at aa 13-31 and 134-156" misc_feature 14363..14833 /locus_tag="SEQ_0015" /inference="protein motif:PFAM:PF06480" /note="HMMPfam hit to PF06480, FtsH Extracellular, score 1.1e-35" misc_feature 14909..15472 /locus_tag="SEQ_0015" /inference="protein motif:PFAM:PF00004" /note="HMMPfam hit to PF00004, ATPase family associated with various c, score 1.4e-91" misc_feature 14924..14947 /locus_tag="SEQ_0015" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 15221..15277 /locus_tag="SEQ_0015" /inference="protein motif:Prosite:PS00674" /note="PS00674 AAA-protein family signature." misc_feature 15488..16114 /locus_tag="SEQ_0015" /inference="protein motif:PFAM:PF01434" /note="HMMPfam hit to PF01434, Peptidase family M41, score 2e-108" gene 16309..17772 /locus_tag="SEQ_0016" /db_xref="GeneID:7697433" CDS 16309..17772 /locus_tag="SEQ_0016" /codon_start=1 /transl_table=11 /product="amino acid permease" /protein_id="YP_002745450.1" /db_xref="GI:225869503" /db_xref="GeneID:7697433" /translation="MKFTIVRNYDKLSRTILRLESDKMTIFRKKRQAINKTEMNRHLK MLDLIFLGLGSMVGTGIFTITGIGAANYAGPALTISIILSAIAISILALFYAEFASRI PANGGAYSYVYATLGEFPAWIVGWYIIMEFLTAISSVAVGWGSYLKGLLANYGLQLPN ALNGTFDPQKGTYVDLLPVLVMLLVTAIVLMNSKAALRFNSFLVLLKFSALALFVIVG LFFIDVANWSHFAPYGFGQIYGGKSGIFAGASVMFFAFLGFESISMTVDEVKEPQKTI PRGIVLSLTIVTILYVIVTMVLTGIVHYTKLDVPDAVAFALRSIGLYWAADYVSIVAI LTLITVCISMTYALARTVYSISRDGLLPRALCQITEKTRIPRNATLVVGALSMICAGI FPLASLAEFVNICTLAYLVIMSFAIIKLRKNAGEPQRGEFKTPFVPLLPILAIIICVT FMSQYMVFTWIAFGISTILGIVVYACYGYTHSQERRN" misc_feature 16447..17769 /locus_tag="SEQ_0016" /inference="protein motif:PFAM:PF00324" /note="HMMPfam hit to PF00324, Amino acid permease, score 1.3e-25" misc_feature join(16450..16518,16528..16596,16630..16698,16819..16887, 16906..16974,17017..17085,17146..17214,17299..17367, 17428..17496,17509..17562,17599..17667,17677..17745) /locus_tag="SEQ_0016" /inference="protein motif:TMHMM 2.0" /note="12 transmembrane helices predicted for SEQ0016 by TMHMM2.0 at aa 48-70, 74-96, 108-130, 171-193, 200-222, 237-259, 280-302, 331-353, 374-396, 401-418, 431-453 and 457-479" misc_feature 17014..17037 /locus_tag="SEQ_0016" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 17704..17736 /locus_tag="SEQ_0016" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 18041..19589 /locus_tag="SEQ__r01" /db_xref="GeneID:7697434" rRNA 18041..19589 /locus_tag="SEQ__r01" /product="16S ribosomal RNA" /db_xref="GeneID:7697434" gene 19809..19881 /gene="tRNA-Ala" /locus_tag="SEQ__t01" /db_xref="GeneID:7696443" tRNA 19809..19881 /gene="tRNA-Ala" /locus_tag="SEQ__t01" /product="tRNA-Ala" /note="tRNA Ala anticodon TGC, Cove score 84.64" /db_xref="GeneID:7696443" gene 20189..23090 /locus_tag="SEQ__r02" /db_xref="GeneID:7696953" rRNA 20189..23090 /locus_tag="SEQ__r02" /product="23S ribosomal RNA" /db_xref="GeneID:7696953" gene 23173..23282 /locus_tag="SEQ__r03" /db_xref="GeneID:7696444" rRNA 23173..23282 /locus_tag="SEQ__r03" /product="5S ribosomal RNA" /db_xref="GeneID:7696444" gene 23303..23375 /gene="tRNA-Val" /locus_tag="SEQ__t02" /db_xref="GeneID:7696445" tRNA 23303..23375 /gene="tRNA-Val" /locus_tag="SEQ__t02" /product="tRNA-Val" /note="tRNA Val anticodon TAC, Cove score 84.84" /db_xref="GeneID:7696445" gene 23389..23461 /gene="tRNA-Asp" /locus_tag="SEQ__t03" /db_xref="GeneID:7696373" tRNA 23389..23461 /gene="tRNA-Asp" /locus_tag="SEQ__t03" /product="tRNA-Asp" /note="tRNA Asp anticodon GTC, Cove score 73.97" /db_xref="GeneID:7696373" gene 23465..23537 /gene="tRNA-Lys" /locus_tag="SEQ__t04" /db_xref="GeneID:7696969" tRNA 23465..23537 /gene="tRNA-Lys" /locus_tag="SEQ__t04" /product="tRNA-Lys" /note="tRNA Lys anticodon TTT, Cove score 82.30" /db_xref="GeneID:7696969" gene 23543..23624 /gene="tRNA-Leu" /locus_tag="SEQ__t05" /db_xref="GeneID:7696992" tRNA 23543..23624 /gene="tRNA-Leu" /locus_tag="SEQ__t05" /product="tRNA-Leu" /note="tRNA Leu anticodon TAG, Cove score 68.24" /db_xref="GeneID:7696992" gene 23632..23704 /gene="tRNA-Thr" /locus_tag="SEQ__t06" /db_xref="GeneID:7696985" tRNA 23632..23704 /gene="tRNA-Thr" /locus_tag="SEQ__t06" /product="tRNA-Thr" /note="tRNA Thr anticodon TGT, Cove score 83.52" /db_xref="GeneID:7696985" gene 23716..23787 /gene="tRNA-Gly" /locus_tag="SEQ__t07" /db_xref="GeneID:7696366" tRNA 23716..23787 /gene="tRNA-Gly" /locus_tag="SEQ__t07" /product="tRNA-Gly" /note="tRNA Gly anticodon GCC, Cove score 83.78" /db_xref="GeneID:7696366" gene 23796..23880 /gene="tRNA-Leu" /locus_tag="SEQ__t08" /db_xref="GeneID:7696977" tRNA 23796..23880 /gene="tRNA-Leu" /locus_tag="SEQ__t08" /product="tRNA-Leu" /note="tRNA Leu anticodon TAA, Cove score 66.62" /db_xref="GeneID:7696977" gene 23895..23968 /gene="tRNA-Arg" /locus_tag="SEQ__t09" /db_xref="GeneID:7696986" tRNA 23895..23968 /gene="tRNA-Arg" /locus_tag="SEQ__t09" /product="tRNA-Arg" /note="tRNA Arg anticodon ACG, Cove score 74.41" /db_xref="GeneID:7696986" gene 23975..24048 /gene="tRNA-Pro" /locus_tag="SEQ__t10" /db_xref="GeneID:7696959" tRNA 23975..24048 /gene="tRNA-Pro" /locus_tag="SEQ__t10" /product="tRNA-Pro" /note="tRNA Pro anticodon TGG, Cove score 80.16" /db_xref="GeneID:7696959" gene 24059..24132 /gene="tRNA-Met" /locus_tag="SEQ__t11" /db_xref="GeneID:7696360" tRNA 24059..24132 /gene="tRNA-Met" /locus_tag="SEQ__t11" /product="tRNA-Met" /note="tRNA Met anticodon CAT, Cove score 76.98" /db_xref="GeneID:7696360" gene 24153..24226 /gene="tRNA-Met" /locus_tag="SEQ__t12" /db_xref="GeneID:7696996" tRNA 24153..24226 /gene="tRNA-Met" /locus_tag="SEQ__t12" /product="tRNA-Met" /note="tRNA Met anticodon CAT, Cove score 89.74" /db_xref="GeneID:7696996" gene 24234..24323 /gene="tRNA-Ser" /locus_tag="SEQ__t13" /db_xref="GeneID:7696355" tRNA 24234..24323 /gene="tRNA-Ser" /locus_tag="SEQ__t13" /product="tRNA-Ser" /note="tRNA Ser anticodon TGA, Cove score 61.73" /db_xref="GeneID:7696355" gene 24335..24408 /gene="tRNA-Met" /locus_tag="SEQ__t14" /db_xref="GeneID:7696362" tRNA 24335..24408 /gene="tRNA-Met" /locus_tag="SEQ__t14" /product="tRNA-Met" /note="tRNA Met anticodon CAT, Cove score 75.45" /db_xref="GeneID:7696362" gene 24433..24505 /gene="tRNA-Phe" /locus_tag="SEQ__t15" /db_xref="GeneID:7696356" tRNA 24433..24505 /gene="tRNA-Phe" /locus_tag="SEQ__t15" /product="tRNA-Phe" /note="tRNA Phe anticodon GAA, Cove score 75.06" /db_xref="GeneID:7696356" gene 24511..24581 /gene="tRNA-Gly" /locus_tag="SEQ__t16" /db_xref="GeneID:7696358" tRNA 24511..24581 /gene="tRNA-Gly" /locus_tag="SEQ__t16" /product="tRNA-Gly" /note="tRNA Gly anticodon TCC, Cove score 71.92" /db_xref="GeneID:7696358" gene 24611..24684 /gene="tRNA-Ile" /locus_tag="SEQ__t17" /db_xref="GeneID:7696978" tRNA 24611..24684 /gene="tRNA-Ile" /locus_tag="SEQ__t17" /product="tRNA-Ile" /note="tRNA Ile anticodon GAT, Cove score 86.72" /db_xref="GeneID:7696978" gene 24694..24781 /gene="tRNA-Ser" /locus_tag="SEQ__t18" /db_xref="GeneID:7696983" tRNA 24694..24781 /gene="tRNA-Ser" /locus_tag="SEQ__t18" /product="tRNA-Ser" /note="tRNA Ser anticodon GCT, Cove score 56.13" /db_xref="GeneID:7696983" gene 24840..25655 /locus_tag="SEQ_0017" /db_xref="GeneID:7696363" CDS 24840..25655 /locus_tag="SEQ_0017" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreC" /protein_id="YP_002745451.1" /db_xref="GI:225869504" /db_xref="GeneID:7696363" /translation="MKKLNLSRLFFWLTSLALLALTLVLLFRVAISPYLSMIIRNPVT KIDAIMSKPFAVIKEGAKELDSLMSAFSENKHLKKELRSYKLDQLQVDKLKSENRELK ELLGLDYGTDNQFAARMISRNPYSWNKSLVIDSGKREIKEKSLVTSELGLIGRVTAVS QSSAHVELLTSGKNIELPIKIVDKDKVIYGNLKAFKSESKTMVASEFNSNDSISLDAK VYTSGLDGETVADIPVGKVTGFKNAADKLKRRIFIKLYADTDNLDYVLVVGKE" sig_peptide 24840..24929 /locus_tag="SEQ_0017" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0017 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.309 between residues 30 and 31" misc_feature 24864..24932 /locus_tag="SEQ_0017" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0017 by TMHMM2.0 at aa 9-31" misc_feature 25188..25652 /locus_tag="SEQ_0017" /inference="protein motif:PFAM:PF04085" /note="HMMPfam hit to PF04085, rod shape-determining protein MreC, score 2.2e-23" gene 25658..26161 /locus_tag="SEQ_0018" /db_xref="GeneID:7697435" CDS 25658..26161 /locus_tag="SEQ_0018" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745452.1" /db_xref="GI:225869505" /db_xref="GeneID:7697435" /translation="MKKSSELLVLLPFLLFFVDAHVSDLISSMLPEGYSVVSHLFLLF FLILMVAFRSKGVICFFSLLLGLLFDYYYFDHIGILSLALPFGTMIVLGLLRFFSGSI SQLQFFLFFTLYMFLVDVSSFILANSYQLTDMTFPYVMTFQLAPTLIVNLLILFCFRK LILSQFY" sig_peptide 25658..25717 /locus_tag="SEQ_0018" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0018 by SignalP 2.0 HMM (Signal peptide probability 0.874) with cleavage site probability 0.501 between residues 20 and 21" misc_feature join(25676..25744,25754..25813,25826..25879,25889..25957, 25976..26035,26063..26131) /locus_tag="SEQ_0018" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0018 by TMHMM2.0 at aa 7-29, 33-52, 57-74, 78-100, 107-126 and 136-158" gene 26257..27435 /locus_tag="SEQ_0019" /db_xref="GeneID:7697436" CDS 26257..27435 /locus_tag="SEQ_0019" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_002745453.1" /db_xref="GI:225869506" /db_xref="GeneID:7697436" /translation="MKKRILSAVLVSGVTLGTATTVGADDLDSKIALQNSVISNLNKE QKAAQDRMKTLQSQVSSLQSEQERLVAKNGELEARSAQFEQEIQVLASQIIARNEKLK GQARSAQKGNTLGYLNALLNSKSISDVITRLVAINRAVSANAQMLEKQKADKLSLEEK QQENQEAINTIASNITAIESNQVALKTQQADLEVAKVDLALQLATAEDEKASLITRKE AAEQAAAQAKAQAEQEAAARAAQAQAQAQSVAAAQAAVTQAVPTPAPAQAQPVVAPAA MVSTPAVSYAYDPSNPYPVGQCTWGVKALAPWVGNYWGNGGQWASSAAAAGFRVGATP MVGSVVVWNDGGYGHVAYVTGVQGGQIQVMEANYAGNQSIGNYRGWFSPGAVSYIYPN" sig_peptide 26257..26328 /locus_tag="SEQ_0019" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0019 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 24 and 25" misc_feature 27088..27426 /locus_tag="SEQ_0019" /inference="protein motif:PFAM:PF05257" /note="HMMPfam hit to PF05257, CHAP domain, score 2.7e-38" gene 27528..28502 /locus_tag="SEQ_0020" /db_xref="GeneID:7697437" CDS 27528..28502 /locus_tag="SEQ_0020" /EC_number="2.7.6.1" /codon_start=1 /transl_table=11 /product="ribose-phosphate pyrophosphokinase 1" /protein_id="YP_002745454.1" /db_xref="GI:225869507" /db_xref="GeneID:7697437" /translation="MEEKMSYSDLKLFALSSNKELAEKVAAAMGIQLGKSTVRQFSDG EIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAEKISVVMPYYGYAR QDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADY FDRHGLVGDDVVVVSPDHGGVTRARKLAQFLQTPIAIIDKRRSVDKMNTSEVMNIIGS VEGKKCILIDDMIDTAGTICHAADALAEAGATAVYASCTHPVLSGPALDNIQKSAIEK LIVLDTIYLPEERLIDKIEQISIADLIAEAIIRIHEKRPLSPLFELGK" misc_feature 27897..27926 /locus_tag="SEQ_0020" /inference="protein motif:Prosite:PS00339" /note="PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2." misc_feature 27927..27974 /locus_tag="SEQ_0020" /inference="protein motif:Prosite:PS00114" /note="PS00114 Phosphoribosyl pyrophosphate synthetase signature." misc_feature 27960..28361 /locus_tag="SEQ_0020" /inference="protein motif:PFAM:PF00156" /note="HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 7.8e-35" misc_feature 28197..28235 /locus_tag="SEQ_0020" /inference="protein motif:Prosite:PS00103" /note="PS00103 Purine/pyrimidine phosphoribosyl transferases signature." gene 28862..29632 /gene="recO" /locus_tag="SEQ_0022" /db_xref="GeneID:7697438" CDS 28862..29632 /gene="recO" /locus_tag="SEQ_0022" /codon_start=1 /transl_table=11 /product="DNA repair protein RecO" /protein_id="YP_002745455.1" /db_xref="GI:225869508" /db_xref="GeneID:7697438" /translation="MRIQRSLGIVLYNKNYREDDKLVKIFTEAAGKRMFFVKHIGRSK LAPVVQPLTAADFLLKINDSSLSYIEDYNQVEAYRHINEDFFRLSYASYVLALADAAI PDNEPDPQLFAFLKKTLDLMEEGLDYDILTNIFEVQILDRFGVRMNFHDCVFCHRTNL PFDFSHKYSGVLCPQHYHEDERRYGLDPNVIYLLNRFQTLNIDELKTISVNTGMKKKL RLFIDALYEDYVGIRLKSKVFIDDLAKWGDIMKNKQGL" misc_feature 28862..29599 /gene="recO" /locus_tag="SEQ_0022" /inference="protein motif:PFAM:PF02565" /note="HMMPfam hit to PF02565, Recombination protein O, score 2.4e-15" misc_feature 29315..29332 /gene="recO" /locus_tag="SEQ_0022" /inference="protein motif:Prosite:PS00190" /note="PS00190 Cytochrome c family heme-binding site signature." gene 29748..30755 /locus_tag="SEQ_0023" /db_xref="GeneID:7697439" CDS 29748..30755 /locus_tag="SEQ_0023" /codon_start=1 /transl_table=11 /product="fatty acid/phospholipid synthesis protein" /protein_id="YP_002745456.1" /db_xref="GI:225869509" /db_xref="GeneID:7697439" /translation="MKKIAIDAMGGDYAPKAIVEGVNQAIESFSDIEIQLYGDQSRIE SYLVKSDRVSIVHTDEKINSDDEPAKAIRRKKNASMVLAARAVKDGRADAVLSAGNTG ALLAAGLFIIGRIKGVDRPGLLSTLPTVDGSGFDMLDLGANAENTAEHLHQYAILGSF YAKHVRGIAKPRIGLLNNGTEATKGDSLRKEVYNFLASDSSLQFIGNVEARDLMSGVA DVVVADGFTGNAVLKSIEGTAMSIMGQLKSAIAVGGVKAKFGALLLKSSLYDLKDTLD YSSAGGAVLFGLKAPLVKSHGSSDAKAIFHTIKQVRTMLETDVVGQLVEEFSKESDVN D" misc_feature 29751..30713 /locus_tag="SEQ_0023" /inference="protein motif:PFAM:PF02504" /note="HMMPfam hit to PF02504, Fatty acid synthesis protein, score 7.8e-129" gene 30748..30996 /locus_tag="SEQ_0024" /db_xref="GeneID:7697440" CDS 30748..30996 /locus_tag="SEQ_0024" /codon_start=1 /transl_table=11 /product="acyl carrier protein" /protein_id="YP_002745457.1" /db_xref="GI:225869510" /db_xref="GeneID:7697440" /translation="MTEEVILEKIIALIKKQRSRIDFDITEKTALKDDLGVDSIELVE FVINIEDEFGIDIPDEDVDGMVSMGDMLNYLVKRLNQS" misc_feature 30769..30972 /locus_tag="SEQ_0024" /inference="protein motif:PFAM:PF00550" /note="HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 1.6e-06" gene 31146..31856 /locus_tag="SEQ_0025" /db_xref="GeneID:7697441" CDS 31146..31856 /locus_tag="SEQ_0025" /EC_number="6.3.2.6" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole-succinocarboxamide synthase" /protein_id="YP_002745458.1" /db_xref="GI:225869511" /db_xref="GeneID:7697441" /translation="MSNQLIYSGKAKDIYETADDGIVLISYKDQVTMLNGAHKEMIEG KGSLNNQISALIFDRLNRVGVSTHFIKQLSETEQLNKRVAIIPLEVVLRNVAAGSFSK RFGVKEGQALDEPIIELYYKNDALDDPFINDEHVSFLKLATDEQIAYIKQETHRINAY LKEWFASVGLTLVDFKLEFGFDKEGMLILADEFSPDNCRLWDNAGRHMDKDVFRRQLG SLTQAYETVLERLRALDQ" misc_feature 31149..31850 /locus_tag="SEQ_0025" /inference="protein motif:PFAM:PF01259" /note="HMMPfam hit to PF01259, SAICAR synthetase, score 3.2e-106" misc_feature 31398..31442 /locus_tag="SEQ_0025" /inference="protein motif:Prosite:PS01057" /note="PS01057 SAICAR synthetase signature 1." misc_feature 31659..31685 /locus_tag="SEQ_0025" /inference="protein motif:Prosite:PS01058" /note="PS01058 SAICAR synthetase signature 2." gene 31969..35775 /locus_tag="SEQ_0026" /db_xref="GeneID:7697442" CDS 31969..35775 /locus_tag="SEQ_0026" /EC_number="6.3.5.3" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase protein" /protein_id="YP_002745459.1" /db_xref="GI:225869512" /db_xref="GeneID:7697442" /translation="MEKRVRLVLILGWFLIGLGILTMNKRIFVEKKADFQIKAQVLLK ELKHQLQLKTLVDLRIVQVYDVFHLDQELLLTAIKHVFSEQVTDQVLSEEALQADLKR YAFFAIEALPGQFDQRAASSQEALLLLGASTDVTVLTSQLYLVNQDIAAEELEALKQY LLNPVDSRFKDILAGLDDQDFSVADKVIPTLDVFNDYTAEDLARYRSEQGLAMEVEDL LFIQDYFKTKGRVPTETELRVLDTYWSDHCRHTTFETELKTLDFSASHFEKQLQATYE TYLAMRDELGRSERPQTLMDMATIFGRYERANGRLEDLEVSDEINAYSVEIEVDVDGV KEPWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDPLSGRSYVYQAMRLSGAGDITSP LSETRKGKLPQQVISRQAAHGYSSYGNQIGLATTYVREYFHPGFVAKRMELGAVVGAA PKENVVREKPRTGDVVVLLGGKTGRDGIGGATGSSKVQTVESVETAGAEVQKGNAIEE RKIQRLFRRGDVTRLIKKSNDFGAGGVCVAIGELAAGLNINLDKIPLKYAGLNGTEIA ISESQERMAVVICPKDLEAFMSACHKENIHAAVVAAVTEKPNLVMTWNGQTIVDIERS FLETNGVRVSVAAKVVDSGAPIPEARQTTAETLEADTIAVLSDLNHASQKGLQTLFDS SVGRSTVIHPLGGRYQMTPVEGSVQKLPVQHGVTKTVSVIAQGYHPYIAEWSPYHGAA YAVIEATARLVATGSHWHKARFSYQEYFQRMDKQAERFGQPVAALLGAIEAQVQLGLP SIGGKDSMSGSFEELTVPPTLVAFGVTTAHVDHILSPEFKAAGENIYYIPGQAISEVI DFELIKSNFMTFEAIQKKHNISSASAVKYGGVVEALALAAFGNRLGACVTLPELDRSL TAQLGGFIFTSKEEITGVIKLGQTTSDFTLVVNDVKLSGARLLKAFEGSLEQVYPTVF QQAGELKPVPVVTTALAAQFKEKIAQPVVYIPVFPGTNSEYDSAKAFEREGARVNLVP FVTLNEAAIDASVDTMVDHIHQAHIIFLAGGFSAADEPDGSAKFIVNILLNEKVRMAI DAFIEKGGLIIGICNGFQALVKSGLLPYGRFEAVHEASPTLFYNDANQHVAKMVETRI ANTNSPWLAGVRVGDIHAVAVSHGEGKLVVTERELAELCKNGQIFSQYVDLDGNPSMD SRYNPNGSVNAIEGLTSKNGQIIGKMGHSERFEEGLFQNIPGNKDQWLFRSAVHYFRG DHVGID" sig_peptide 31969..32055 /locus_tag="SEQ_0026" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0026 by SignalP 2.0 HMM (Signal peptide probability 0.890) with cleavage site probability 0.835 between residues 29 and 30" misc_feature 31987..32055 /locus_tag="SEQ_0026" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0026 by TMHMM2.0 at aa 7-29" misc_feature 33349..33810 /locus_tag="SEQ_0026" /inference="protein motif:PFAM:PF02769" /note="HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 1e-31" misc_feature 34237..34311 /locus_tag="SEQ_0026" /inference="protein motif:Prosite:PS01159" /note="PS01159 WW/rsp5/WWP domain signature." gene 35894..37351 /locus_tag="SEQ_0027" /db_xref="GeneID:7697443" CDS 35894..37351 /locus_tag="SEQ_0027" /EC_number="2.4.2.14" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase precursor" /protein_id="YP_002745460.1" /db_xref="GI:225869513" /db_xref="GeneID:7697443" /translation="MTYDVKSLNEECGVFGIWRHPHAAQVTYFGLHSLQHRGQEGAGI ISNDNGELHQHRDVGLLSEVFKDSSDLDKLKGHAAIGHVRYATAGTASINNIQPFLYR FTDAQFGLCHNGNLTNAMSLKKALESEGAIFNASSDTEILMHLIRRSHHPEFLGKVKE ALNTVKGGFAYLLMTENQLIAALDPNGFRPLSIGRMKNGAWVVSSETCAFEVVGAEWV RDVMPGEVIIIDDQGITYDCYTTTTQLAICSMEYIYFARPDSTIAGVNVHTARKRMGK RLAQEFQHEADIVVGVPNSSLSAAMGFAEASGLPNEMGLVKNQYTQRTFIQPTQELRE QGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVNLLREAGATEVHVAIGSPELKY PCFYGIDIQTRRELISANHTAAEVCDIIGADSLTYLSLDGLIEAIGLDTKAPNGGLCV AYFDGQYPTPLYDYEEAYLKSLEEKVSFHIDQVTK" misc_feature 35894..35941 /locus_tag="SEQ_0027" /inference="protein motif:Prosite:PS00443" /note="PS00443 Glutamine amidotransferases class-II active site." misc_feature 35927..36514 /locus_tag="SEQ_0027" /inference="protein motif:PFAM:PF00310" /note="HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 4.1e-36" misc_feature 36668..37096 /locus_tag="SEQ_0027" /inference="protein motif:PFAM:PF00156" /note="HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 2.4e-10" misc_feature 36950..36988 /locus_tag="SEQ_0027" /inference="protein motif:Prosite:PS00103" /note="PS00103 Purine/pyrimidine phosphoribosyl transferases signature." gene 37408..38430 /locus_tag="SEQ_0028" /db_xref="GeneID:7697444" CDS 37408..38430 /locus_tag="SEQ_0028" /EC_number="6.3.3.1" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine cyclo-ligase" /protein_id="YP_002745461.1" /db_xref="GI:225869514" /db_xref="GeneID:7697444" /translation="MSKNAYAQSGVDVEAGYELVERIKKHAERSKRLGVMGGLGGFGG LFDLSKTGVKEPVLVSGTDGVGTKLMLAIQYDKHDTIGQDCVAMCVNDIIAAGAEPLY FLDYLAAGKNEPAKLEQVIAGIAEGCVQAGAALIGGETAEMPGMYGQDDYDLAGFAVG IAEKSQLIDGSRVAEGDHLLGLASSGVHSNGYSLVRRIFAGYTGEELLPELDGKKLKE VLLEPTRIYVKAVLPLIKSGLVAGIAHITGGGFIENLPRMFSKELAAEIEEASLPVLP IFKVLETYGKINHEEMFEIFNMGIGMVLAVKPEHVEQVKACLDEPVYDIGRVVTRTVA SVVMKP" misc_feature 37411..37896 /locus_tag="SEQ_0028" /inference="protein motif:PFAM:PF00586" /note="HMMPfam hit to PF00586, AIR synthase related protein, N-terminal dom, score 1.2e-70" misc_feature 37927..38424 /locus_tag="SEQ_0028" /inference="protein motif:PFAM:PF02769" /note="HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 1.1e-43" gene 38427..38984 /gene="purN" /locus_tag="SEQ_0029" /db_xref="GeneID:7697445" CDS 38427..38984 /gene="purN" /locus_tag="SEQ_0029" /EC_number="2.1.2.2" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase" /protein_id="YP_002745462.1" /db_xref="GI:225869515" /db_xref="GeneID:7697445" /translation="MTRIAVFASGNGSNFQTIAEQFPVAFVFSDHCDAHVLSRACALG VLSYSFELKDFENKQAYEQTLVALLQRHQIDLIVLAGYMKIVSTTLLDAYEGKIINIH PAYLPEFPGAHGILDAWQAGVSQSGVTVHWVDSGIDTGKIIKQVRVPRLSDDTLESFE ARIHEAEYQLYPEVLDSLGVERLNR" misc_feature 38430..38951 /gene="purN" /locus_tag="SEQ_0029" /inference="protein motif:PFAM:PF00551" /note="HMMPfam hit to PF00551, Formyl transferase, score 1.6e-55" gene 39131..40678 /gene="purH" /locus_tag="SEQ_0030" /db_xref="GeneID:7697446" CDS 39131..40678 /gene="purH" /locus_tag="SEQ_0030" /EC_number="3.5.4.10" /codon_start=1 /transl_table=11 /product="bifunctional purine biosynthesis protein PurH [includes: phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase]" /protein_id="YP_002745463.1" /db_xref="GI:225869516" /db_xref="GeneID:7697446" /translation="MTKRALISVSDKRGIVDLARELKHLGWDIISTGGTRLALEEAGV VTVAIDDVTGFPEMMDGRVKTLHPLIHGGLLARRDIEHHLQAAKQNRIELIDLVVVNL YPFKETICRPDVTYDVAVDMVDIGGPSLLRSAAKNHASVTVVVDPTDYPLVLGELAST GSTSYQTRQSLAAKAFRHTAAYDAVIADYFTRQAGETKPEKLTLTYDLKQSMRYGENP QQAADFYQRALPTTYSIASAKQLNGKELSFNNIRDADAAIRIIRDFKERPTVVALKHM NPCGIGQADDIETAWDFAYAADPVSIFGGIVVLNREVDLATAEKLHAIFLELIIAPGY SKEALAVLTHKKKHLRILELPFAAQEASEIEAEYTGVLGGLLVQNQDVVTESPADWIV VTKRQPNEQEMAALAFAWKTIKYVKSNAIVIANDHMTLGVGPGQTNRIASIRIAIAQA TGQLEGAVLASDAFFPFADSIEEIAAAGIKAIIQPGGSIRDSESIAAANQHGITMIFT GVRHFRH" misc_feature 39170..39517 /gene="purH" /locus_tag="SEQ_0030" /inference="protein motif:PFAM:PF02142" /note="HMMPfam hit to PF02142, MGS-like domain, score 9.1e-52" misc_feature 39530..40480 /gene="purH" /locus_tag="SEQ_0030" /inference="protein motif:PFAM:PF01808" /note="HMMPfam hit to PF01808, AICARFT/IMPCHase bienzyme, score 2.2e-143" gene complement(41056..42210) /locus_tag="SEQ_0031" /db_xref="GeneID:7697447" CDS complement(41056..42210) /locus_tag="SEQ_0031" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_002745464.1" /db_xref="GI:225869517" /db_xref="GeneID:7697447" /translation="MKKVYQLLASGAILLGGNGAISSATTTISQGQSGIVHAAVLGDN YPSKWKQGFGADPWNMYLRQCTSFVAFRLHSSNGFSLPRGYGNVESWGRIAKHQGYHV DHTPRVGAVAWWDKGFNQSHALYGHVAWVAEVNGDTVIIEEYNYNAGQGPEKYHKRQI HKHQVSGYIHFKDLDHNSTSHTQMLHASQAGSTRLAKSGTYYFSSQSPIKAEATLASP DLAYYHTGQLVHYDQTLVADGYEWLSYIGHSGNHRYIPIHKLPVQPQQHSQASIDKPK PVATTPIKVGDTVAFPGVFRVDQVAQNMIASSELAGGEPTSLNWIDSAPLHETDHKGR IAGNQILQVGDYFVVSGTYKVLKVDQPSKGIYVQMGSRGTWLTIDKAKKV" sig_peptide complement(41056..41169) /locus_tag="SEQ_0031" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0031 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.627 between residues 38 and 39" misc_feature complement(41440..41634) /locus_tag="SEQ_0031" /inference="protein motif:PFAM:PF08460" /note="HMMPfam hit to PF08460, Bacterial SH3 domain, score 8.9e-21" misc_feature complement(41701..42075) /locus_tag="SEQ_0031" /inference="protein motif:PFAM:PF05257" /note="HMMPfam hit to PF05257, CHAP domain, score 7.9e-29" gene 42601..43863 /locus_tag="SEQ_0032" /db_xref="GeneID:7697448" CDS 42601..43863 /locus_tag="SEQ_0032" /EC_number="6.3.4.13" /codon_start=1 /transl_table=11 /product="phosphoribosylamine-glycine ligase" /protein_id="YP_002745465.1" /db_xref="GI:225869518" /db_xref="GeneID:7697448" /translation="MKLLVIGSGGREHAIAKKLLESKGVEQVFVAPGNDGMTLDGIER VDIDISEHSALIAFAKTNHIAWTFVGPDDALAAGIVDEFNQSGLKAFGPSRLAAELEW SKDFAKQIMVKYGIPTAAYGTFSDFAKAKAYIEEKGAPIVVKADGLALGKGVVVAETV EQAVEAARDMLLDNKFGDSGARVVIEEFLAGEEFSLFAFVNGDQFYLMPTAQDHKRAL DGDKGPNTGGMGAYAPVPHLSQSVVDTAVETIVKPVLKGMMTEGRPYLGILYCGLILT EDGPKVIEFNARFGDPETQVILPRLTSDFAQNITDILEGNTANITWSDEGVTLGVVLA SNGYPLAYKKGVLLPAKTTGDIITYYAGVKLAENGKALLSNGGRVYMLVTTAVTVPAA QEKIYTELAQQNTEGLFYRNDIGRKAVK" misc_feature 42601..42903 /locus_tag="SEQ_0032" /inference="protein motif:PFAM:PF02844" /note="HMMPfam hit to PF02844, Phosphoribosylglycinamide synthetase, N d, score 1.4e-41" misc_feature 42907..43482 /locus_tag="SEQ_0032" /inference="protein motif:PFAM:PF01071" /note="HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase, ATP, score 1.7e-119" misc_feature 42919..43365 /locus_tag="SEQ_0032" /inference="protein motif:PFAM:PF08442" /note="HMMPfam hit to PF08442, ATP-grasp domain, score 0.0042" misc_feature 42955..43476 /locus_tag="SEQ_0032" /inference="protein motif:PFAM:PF02655" /note="HMMPfam hit to PF02655, ATP-grasp domain, score 0.0011" misc_feature 43462..43485 /locus_tag="SEQ_0032" /inference="protein motif:Prosite:PS00184" /note="PS00184 Phosphoribosylglycinamide synthetase signature." misc_feature 43579..43857 /locus_tag="SEQ_0032" /inference="protein motif:PFAM:PF02843" /note="HMMPfam hit to PF02843, Phosphoribosylglycinamide synthetase, C d, score 1.9e-13" gene 44093..44581 /locus_tag="SEQ_0033" /db_xref="GeneID:7697449" CDS 44093..44581 /locus_tag="SEQ_0033" /EC_number="4.1.1.21" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole carboxylase catalytic subunit" /protein_id="YP_002745466.1" /db_xref="GI:225869519" /db_xref="GeneID:7697449" /translation="MKPIISIIMGSKSDWTTMQKTAEILDQFGLAYEKKVVSAHRTPD LMFTYAEKARERGIKIIIAGAGGAAHLPGMVAAKTTLPVIGVPVKSRALSGLDSLYSI VQMPGGVPVATMAIGEAGATNAALTALRILSIEDETIAEQLSHFHKEQGRIAEESTHE LN" misc_feature 44099..44575 /locus_tag="SEQ_0033" /inference="protein motif:PFAM:PF00731" /note="HMMPfam hit to PF00731, AIR carboxylase, score 7.4e-90" gene 44568..45641 /locus_tag="SEQ_0034" /db_xref="GeneID:7697450" CDS 44568..45641 /locus_tag="SEQ_0034" /EC_number="4.1.1.21" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole carboxylase ATPase subunit" /protein_id="YP_002745467.1" /db_xref="GI:225869520" /db_xref="GeneID:7697450" /translation="MNSTKTIGIIGGGQLGQMMAISAIYMGHKVITLDPAADCPASRV SEVIVAPYSDVEALRQLTERCDILTYEFENVDADALDTVVKEEQLPQGTELLRISQNR IFEKDFLANKASAAVAPYKVVTSSLDLENLDFSKKYVLKTATGGYDGHGQVVIRSEAD LEEANKLANTAECVLEEFVSFDREISVIVSGNGTDVTVFPVQENIHRNNILSKTIVPA RISEAVSAKSQAMAVKIAEQLNLSGTLCVEMFVAGDEILVNEIAPRPHNSGHYSIEAC DFSQFDTHILGVLGQPLPAVKLHAPAIMLNVLGQHMEQAQRYATENPSAHLHLYGKIE AKHNRKMGHVTVFNSQSDEVEEF" misc_feature 44868..45395 /locus_tag="SEQ_0034" /inference="protein motif:PFAM:PF02222" /note="HMMPfam hit to PF02222, ATP-grasp domain, score 7e-64" misc_feature 44874..45371 /locus_tag="SEQ_0034" /inference="protein motif:PFAM:PF02655" /note="HMMPfam hit to PF02655, ATP-grasp domain, score 0.00061" gene 45656..45880 /locus_tag="SEQ_0035" /db_xref="GeneID:7697451" CDS 45656..45880 /locus_tag="SEQ_0035" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745468.1" /db_xref="GI:225869521" /db_xref="GeneID:7697451" /translation="MIKIIVHAFIENGETGVVEVVFASENQESISEKMTELQKQYPND YLAIYDLPLDTDLSQLAHYPSIAIGKGEFE" gene 45904..46014 /locus_tag="SEQ_0036" /pseudo /db_xref="GeneID:7697452" misc_feature 45904..46014 /locus_tag="SEQ_0036" /note="gene remnant. Similar to the N-terminal region of Streptococcus agalactiae hypothetical protein UniProt:Q3D9U7 (EMBL:AAJR01000013 (317 aa) fasta scores: E()=0.0018, 66.667% id in 30 aa. Downstream CDS, SEQ0036a is similar to an internal region of the same protein." /pseudo /db_xref="PSEUDO:CAW91934.1" gene 46054..46170 /locus_tag="SEQ_0036a" /pseudo /db_xref="GeneID:7697453" misc_feature 46054..46170 /locus_tag="SEQ_0036a" /note="gene remnant. Upstream CDS, SEQ0036 is similar to the N-terminus of the same protein. Similar to an internal region of Streptococcus agalactiae COH1 hypothetical protein UniProt:Q3D9U7 (EMBL:AAJR01000013 (317 aa) fasta scores: E()=6.7, 35.484% id in 31 aa" /pseudo gene 46417..47769 /locus_tag="SEQ_0037" /db_xref="GeneID:7697454" CDS 46417..47769 /locus_tag="SEQ_0037" /EC_number="4.3.2.2" /codon_start=1 /transl_table=11 /product="adenylosuccinate lyase" /protein_id="YP_002745469.1" /db_xref="GI:225869522" /db_xref="GeneID:7697454" /translation="MSVFSFLKFSCFLAVLGILIMLNRYSRPEMAKIWSEENKYRAWL EVEILADEAWAELGEIPKEDVAKIRANASFDINRILEIEEETRHDVVAFTRAVSETLG EERKWVHYGLTSTDVVDTAYGYLYKQANDIIRRDLENFTNIVAEKAKEHKMTIMMGRT HGVHAEPTTFGLKLATWYSEMKRNQERFEHAAAGVEAGKISGAVGNFANIPPFVEEYV CGKLGIRPQEISTQVLPRDLHAEYFAVLASIATSIERMATEIRGLQKSEQREVEEFFA KGQKGSSAMPHKRNPIGSENMTGLARVIRGHMVTAYENVALWHERDISHSSAERIITP DTTILINYMLNRFGNIVKNLTVFPENMTRNMNSTFGLIYSQRVMLKLIEKGMTREEAY DLVQPKTAYSWDNQVDFKPILEADENITAKLRQDELDELFNPAYYTKRVDAIFDRLGL" sig_peptide 46417..46521 /locus_tag="SEQ_0037" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0037 by SignalP 2.0 HMM (Signal peptide probability 0.884) with cleavage site probability 0.575 between residues 35 and 36" misc_feature 46483..47334 /locus_tag="SEQ_0037" /inference="protein motif:PFAM:PF00206" /note="HMMPfam hit to PF00206, Lyase, score 8.8e-92" misc_feature 47257..47286 /locus_tag="SEQ_0037" /inference="protein motif:Prosite:PS00163" /note="PS00163 Fumarate lyases signature." gene 48067..48980 /locus_tag="SEQ_0038" /pseudo /db_xref="GeneID:7697455" misc_feature 48067..48980 /locus_tag="SEQ_0038" /note="CDS contains a frameshift after codon 77. Similar to Streptococcus pyogenes serotype M3 transcriptional regulator UniProt:Q1JP26 (EMBL:CP000259 (303 aa) fasta scores: E()=1.4e-83, 74.257% id in 303 aa" /pseudo /db_xref="PSEUDO:CAW91939.1" misc_feature 48091..48258 /locus_tag="SEQ_0038" /inference="protein motif:PFAM:PF01381" /note="HMMPfam hit to PF01381, Helix-turn-helix, score 6.2e-07" /pseudo gene 49195..50202 /gene="ruvB" /locus_tag="SEQ_0040" /db_xref="GeneID:7697456" CDS 49195..50202 /gene="ruvB" /locus_tag="SEQ_0040" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase, subunit B" /protein_id="YP_002745470.1" /db_xref="GI:225869523" /db_xref="GeneID:7697456" /translation="MTRILDNDLIGDEGSVERTLRPQYLREYIGQDRVKDQLMIFIEA AKRREESLDHVLLFGSPGLGKTTMAFVIANELGVHLKQTSGPAIEKAGDLVAILNDLE PGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGDTSRSVHLELPPFTLIGATTR AGMLSNPLRARFGITGHMEYYQTADLTEIVERTADIFDMTIKHEAAYELARRSRGTPR IANRLLKRVRDYAQIMGDGMITTQITDKALTMLDVDQEGLDYVDQKILRTMIEVYQGG PVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVVTEKAYQHLGYPYEKTIK T" misc_feature 49198..49353 /gene="ruvB" /locus_tag="SEQ_0040" /inference="protein motif:PFAM:PF05496" /note="HMMPfam hit to PF05496, Holliday junction DNA helicase ruvB N-termin, score 2.4e-26" misc_feature 49354..49893 /gene="ruvB" /locus_tag="SEQ_0040" /inference="protein motif:PFAM:PF00004" /note="HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.3e-26" misc_feature 49354..49734 /gene="ruvB" /locus_tag="SEQ_0040" /inference="protein motif:PFAM:PF07728" /note="HMMPfam hit to PF07728, ATPase family associated with various cellul, score 0.0002" misc_feature 49369..49392 /gene="ruvB" /locus_tag="SEQ_0040" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 49942..50178 /gene="ruvB" /locus_tag="SEQ_0040" /inference="protein motif:PFAM:PF05491" /note="HMMPfam hit to PF05491, Holliday junction DNA helicase ruvB C-termin, score 1.5e-52" gene 50443..50901 /locus_tag="SEQ_0041" /db_xref="GeneID:7697457" CDS 50443..50901 /locus_tag="SEQ_0041" /EC_number="3.1.3.48" /codon_start=1 /transl_table=11 /product="phosphotyrosine protein phosphatase" /protein_id="YP_002745471.1" /db_xref="GI:225869524" /db_xref="GeneID:7697457" /translation="MKKVCFVCLGNICRSPMAEFVMKSMASPDELQVESRATSGWEHG NPIHHGTQSLLQQYQISYDTKKTSQQITSFDFEAFDYIIGMDSHNIRDLKQMSKHQWD SKIHLFIEGGVPDPWYTGDFEETYRLVKAGCQHWLSQISAEHESHVEIDE" misc_feature 50446..50859 /locus_tag="SEQ_0041" /inference="protein motif:PFAM:PF01451" /note="HMMPfam hit to PF01451, Low molecular weight phosphotyrosine protein, score 3.7e-33" gene 50907..51308 /locus_tag="SEQ_0042" /db_xref="GeneID:7697458" CDS 50907..51308 /locus_tag="SEQ_0042" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745472.1" /db_xref="GI:225869525" /db_xref="GeneID:7697458" /translation="MKAIINNIQKWQITRTKLEIISVLVIIVCGLSVFTLTISSKASL TYDNGQIKYTGYVLNHRMNGKGKLVYPNGDTYVGDFNKGVFDGEGTFTASTGWSYSGQ FKKGQADGKGTLKAKDSKVYKGTFKQGIFQK" sig_peptide 50907..51032 /locus_tag="SEQ_0042" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0042 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.446 between residues 42 and 43" misc_feature 50964..51023 /locus_tag="SEQ_0042" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0042 by TMHMM2.0 at aa 20-39" misc_feature 51063..51131 /locus_tag="SEQ_0042" /inference="protein motif:PFAM:PF02493" /note="HMMPfam hit to PF02493, MORN repeat, score 3.5e-05" misc_feature 51132..51200 /locus_tag="SEQ_0042" /inference="protein motif:PFAM:PF02493" /note="HMMPfam hit to PF02493, MORN repeat, score 0.001" misc_feature 51201..51269 /locus_tag="SEQ_0042" /inference="protein motif:PFAM:PF02493" /note="HMMPfam hit to PF02493, MORN repeat, score 0.00052" gene 51305..53086 /locus_tag="SEQ_0043" /db_xref="GeneID:7697459" CDS 51305..53086 /locus_tag="SEQ_0043" /codon_start=1 /transl_table=11 /product="acyltransferase family protein" /protein_id="YP_002745473.1" /db_xref="GI:225869526" /db_xref="GeneID:7697459" /translation="MRIKWFSFIRVTGLLLVLLYHFFKHTFSGGFVGVDIFFTFSGYL ITALLIDEYVSKQTIDVVAFFRRRFYRIVPPLVLLILLTIPFTFLVKSDFIAGIGQQI AAALGFTTNSYELLTGSSYESQFIPHLFVHTWSLAIEVHFYLLWGLLVWLLAKKGYSQ KKFRGILFLISSAVFTLSYFSMFIRAFFVSDFSSVYFSTLSHSFPFFLGAMFATMTGI KDTTVRFQKNVKLWPRLHVIGVMAGAFALLLFLTLVLDFNHIFTYLFGFVLASLFASV MIYAARVLSDQTPTWQEPLLVTYLADISYGIYLFHWPFYIIFTQLMSNWLAVILTVFF SVVFSTLSYYIIEPLIQGKTPQLFGLAIDCNPYKKWLSGLALGLFLLMVGTCLTAPRV GNFETQLLVDSLQQSQSNLNKTHTLAAGDAHALSDVSIIGDSVALRSSDAFSKLMPTA QLDAAVSRNFSEAFELFENHIQSKSLSKTTVLAVGVNSLYNYAQDIQGFIYALPKGHR LVIVSPYDAKNAAQVAEAREHLLQLAKKYSYVTVADWYKAAVENPNIWYGSDGVHYNN DAKLKGADLYVSTIQAAVERAAKKDAK" misc_feature 51311..52363 /locus_tag="SEQ_0043" /inference="protein motif:PFAM:PF01757" /note="HMMPfam hit to PF01757, Acyltransferase family, score 7.1e-31" misc_feature join(51317..51373,51383..51451,51509..51574,51695..51763, 51800..51868,51878..51946,52007..52075,52085..52153, 52187..52255,52283..52351,52412..52480) /locus_tag="SEQ_0043" /inference="protein motif:TMHMM 2.0" /note="11 transmembrane helices predicted for SEQ0043 by TMHMM2.0 at aa 5-23, 27-49, 69-90, 131-153, 166-188, 192-214, 235-257, 261-283, 295-317, 327-349 and 370-392" gene 53506..56148 /locus_tag="SEQ_0044" /db_xref="GeneID:7697460" CDS 53506..56148 /locus_tag="SEQ_0044" /EC_number="1.1.1.1" /codon_start=1 /transl_table=11 /product="aldehyde-alcohol dehydrogenase 2 [includes: alcohol dehydrogenase; acetaldehyde dehydrogenase]" /protein_id="YP_002745474.1" /db_xref="GI:225869527" /db_xref="GeneID:7697460" /translation="MTEKNSTVETTSVAATIDALVQKGLVALDKMRQLTQEQVDYIVA KASVAALDAHGELAKHAYEETGRGVFEDKATKNLFACEHVVNNMRHQKTVGIIEEDDV TGLTLIAEPVGVICGITPTTNPTSTAIFKSLISLKTRNPIIFAFHPSAQESSAHAARI VRDAAIAAGAPEDCVQWIETPSLEATNALMNHDGIATILATGGNAMVKAAYSCGKPAL GVGAGNVPAYVEKSANIRQAAHDIVMSKSFDNGMVCASEQAVIIDKEIYDEFVSEFKS YHTYFVNKKEKALLEEFCFGAKANSKNCAGAKLNPNIVGKPAAWIAEQAGFTVPEGTN ILAAECKEVSENEPLTREKLSPVIAVLKAESRTDGVEKARQMVEFNGLGHSAAIHTAD ADLAKEFGTKIRAIRVIWNSPSTFGGIGDVYNAFLPSLTLGCGSYGRNSVGDNVSAVN LLNIKKVGRRRNNMQWFKVPSKTYFERDSIQYLQKCRDVERVMIVTDHAMVELGFLDR IIEQLDLRRNKVVYQIFADVEPDPDITTVMKGTELMRTFKPDTIIALGGGSPMDAAKV MWLFYEQPEVDFHDLVQKFMDIRKRAFKFPELGKKTKFVAIPTTSGTGSEVTPFAVIS DKANNRKYPIADYSLTPTVAIVDPALVLTVPGFIAADTGMDVLTHATEAYVSQMANDF TDGLALQAIKIVFENLEKSVKEADFESREKMHNASTMAGMAFANAFLGISHSMAHKIG AQFHTVHGRTNAILLPYVIRYNGTRPAKTATWPKYNYYRADEKYQDIAKLLGLPASTP EEGVESYAKAVYDLGCRLGIKMNFRDQGIDEEEWKAHTRELAYLAYEDQCSPANPRLP MVEHMEEIMNDAYYGYAERPGRRK" misc_feature 53515..54801 /locus_tag="SEQ_0044" /inference="protein motif:PFAM:PF00171" /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 3.4e-07" misc_feature 54775..54807 /locus_tag="SEQ_0044" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 54913..56088 /locus_tag="SEQ_0044" /inference="protein motif:PFAM:PF00465" /note="HMMPfam hit to PF00465, Iron-containing alcohol dehydrogenase, score 1.3e-142" misc_feature 55435..55521 /locus_tag="SEQ_0044" /inference="protein motif:Prosite:PS00913" /note="PS00913 Iron-containing alcohol dehydrogenases signature 1." misc_feature 55693..55755 /locus_tag="SEQ_0044" /inference="protein motif:Prosite:PS00060" /note="PS00060 Iron-containing alcohol dehydrogenases signature 2." gene 56643..57695 /locus_tag="SEQ_0045" /db_xref="GeneID:7697461" CDS 56643..57695 /locus_tag="SEQ_0045" /codon_start=1 /transl_table=11 /product="zinc-binding alcohol dehydrogenase" /protein_id="YP_002745475.1" /db_xref="GI:225869528" /db_xref="GeneID:7697461" /translation="MKAATYVAPGQLELIDQPKPEILAPTDAVVRLLKTTICGTDLHI LGGDVPETTHGTILGHEGIGIVESVGSAVNNFKVGDKVIISCITACNTCYYCKKGIPA HCESGGWILGHLINGTQAEYVHIPQADGSLYHAPKTVEDDALVMLSDIFPTSYEIGVQ SAKVKPGDTVCIVGAGPIGLAALLTAQFYSPAKLIMVDLSESRLEAAKRFGATDTICS GDLDDIVKKVHELTDGRGVDVAIECVGYPATFDICQKIIAIGGHVSNVGVHGKPVSLD LQDLWIKNITMSTGLVNANTTEMLLNVLKSGKIDATKMVTHHFKLSEVEKAYEVFKNA GSNNALKVIIENDITA" misc_feature 56715..57047 /locus_tag="SEQ_0045" /inference="protein motif:PFAM:PF08240" /note="HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 2.4e-37" misc_feature 56817..56861 /locus_tag="SEQ_0045" /inference="protein motif:Prosite:PS00059" /note="PS00059 Zinc-containing alcohol dehydrogenases signature." misc_feature 57138..57560 /locus_tag="SEQ_0045" /inference="protein motif:PFAM:PF00107" /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 8.7e-36" gene 57898..58914 /locus_tag="SEQ_0046" /db_xref="GeneID:7697462" CDS 57898..58914 /locus_tag="SEQ_0046" /EC_number="1.1.1.1" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase" /protein_id="YP_002745476.1" /db_xref="GI:225869529" /db_xref="GeneID:7697462" /translation="MKAVVVNQTSSGVEVVEHDVPSIGHGEALVKVEYCGVCHTDLHV AHGDFGQVPGRILGHEGIGIVEKLGEGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRET LCRSVKNAGYSVDGGMSEYAVVTADYAVKVPDGLDPAQASSITCAGVTTYKAIKEAGA APGQWIVIFGAGGLGNLAVQYAKKVFNAHVVAVDINNDKLELAKEVGADIVVNGKEIE DVAGYIQEKTGGAHGVVVTAVSKVAFNQAIDSVRAGGTVVAVGLPSEYMELSIVKTVL DGIKVVGSLVGTRKDLEEAFAFGAEGLVVPVVEKVPVETAPEVFDEMERGLIQGRKVL DFTL" misc_feature 57970..58293 /locus_tag="SEQ_0046" /inference="protein motif:PFAM:PF08240" /note="HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 9.5e-49" misc_feature 58000..58017 /locus_tag="SEQ_0046" /inference="protein motif:Prosite:PS00190" /note="PS00190 Cytochrome c family heme-binding site signature." misc_feature 58069..58113 /locus_tag="SEQ_0046" /inference="protein motif:Prosite:PS00059" /note="PS00059 Zinc-containing alcohol dehydrogenases signature." misc_feature 58381..58800 /locus_tag="SEQ_0046" /inference="protein motif:PFAM:PF00107" /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 1.2e-39" repeat_region 58987..59006 /note="20mer direct repeat flanking genomic island" misc_feature 59007..64976 /note="genomic island" gene 59630..61222 /locus_tag="SEQ_0047" /db_xref="GeneID:7697463" CDS 59630..61222 /locus_tag="SEQ_0047" /codon_start=1 /transl_table=11 /product="ABC transporter, ATP-binding/permease protein" /protein_id="YP_002745477.1" /db_xref="GI:225869530" /db_xref="GeneID:7697463" /translation="MKEIVRSHRLLYVIVAFFSVISAFLMTLFSIQLGKILDSISNSS SELLFQIVVCVCTIMAWFIMIWSYSYFKSYYVKKVILDLKERLFIGYLLREFNEIDTC DRYNSDFLNNVTKNIDIIQENLLVPRVAVIVDLASMVTSVVAIVLIEWRLALVFLLLS IVTVFLSQIPGKLMSKATRYYSEKSNHYLAEMTSFIEGFEQIKLLNIQKWIQKIEQNT TLEFEDSRQKYQYRKDLASNTGMFLSFFSQVACMVAGIFFVRNNLLTVGLLVASIQLL NGVFGPLQSFLYNKNLIKSTGTILTSIQEVLDKTNFVNGYIENKTFYEGDISSISINN LTYQVENRKIFTNFSFEFKKGNTYAIIGPSGVGKTTLAKLILNYYPKHLYDGEIRIDG RNIAEINSESLYKKIAFVQKNDFLVEGNVSDNIKLDGSLNLTDKLKDSLGFDETFLNK KLFRVQSLISEGEKQRIDLARFLNRRYSIYIFDEPTGNLDPARSKAILDYILSIKNAI IIVITHNQDIKTLEQFDEVICL" sig_peptide 59630..59719 /locus_tag="SEQ_0047" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0047 by SignalP 2.0 HMM (Signal peptide probability 0.950) with cleavage site probability 0.368 between residues 30 and 31" misc_feature 59663..60478 /locus_tag="SEQ_0047" /inference="protein motif:PFAM:PF00664" /note="HMMPfam hit to PF00664, ABC transporter transmembrane region, score 1.1e-05" misc_feature join(59663..59731,59774..59842,59999..60067,60077..60136, 60332..60400) /locus_tag="SEQ_0047" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0047 by TMHMM2.0 at aa 12-34, 49-71, 124-146, 150-169 and 235-257" misc_feature 60692..61201 /locus_tag="SEQ_0047" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 4.6e-27" misc_feature 60713..60736 /locus_tag="SEQ_0047" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 61385..62507 /locus_tag="SEQ_0048" /pseudo /db_xref="GeneID:7697464" misc_feature 61385..62507 /locus_tag="SEQ_0048" /note="CDS contains a frameshift after codon 214. Similar to Enterococcus faecalis (Streptococcus faecalis) HesA/MoeB/ThiF family protein UniProt:Q835P7 (EMBL:AE016830 (377 aa) fasta scores: E()=8.8e-21, 28.609% id in 381 aa" /pseudo /db_xref="PSEUDO:CAW91956.1" misc_feature 61751..62020 /locus_tag="SEQ_0048" /inference="protein motif:PFAM:PF00899" /note="HMMPfam hit to PF00899, ThiF family, score 1.3e-08" /pseudo gene 62500..63675 /locus_tag="SEQ_0050" /db_xref="GeneID:7697465" CDS 62500..63675 /locus_tag="SEQ_0050" /codon_start=1 /transl_table=11 /product="Insulinase family metallopeptidase" /protein_id="YP_002745478.1" /db_xref="GI:225869531" /db_xref="GeneID:7697465" /translation="MNKKIIFKGDQDSKFAYFSLMFSAGTAIENTEELGFSHLIEHLL LRSGGEQSLNELFDNNGAFIGGETSRDYINLMGYCKAENFKNIFEAIVSRVFNLNLTE EELLREKRVVLVELTQYENGSKTEKLVSDNRLIFKNSKWSEDIIGVRENIESVDLKKL YKFYTENIQNGEFQIAISGPNHLKEEIAIIENKLPVGRTPVKSNFPIFSSGVTERKKN QQVSEISMYIDISKMTTSSHDVAILTILNAMLTGVKGSVLGGKLRTKNQWVYNIISFP IFYNGLTILKILTRTPEIHKHQVVQVLKEDLVNREDLKNTKLFDKAKKRVINEVLMSY EVKKVEFLKTLCREKLFNIPSWESVTGEIEKVSLNELNQFAKDALMQNKQFHIIINC" misc_feature 62509..62946 /locus_tag="SEQ_0050" /inference="protein motif:PFAM:PF00675" /note="HMMPfam hit to PF00675, Insulinase (Peptidase family M16), score 0.00016" misc_feature 62572..62643 /locus_tag="SEQ_0050" /inference="protein motif:Prosite:PS00143" /note="PS00143 Insulinase family, zinc-binding region signature." misc_feature 62959..63477 /locus_tag="SEQ_0050" /inference="protein motif:PFAM:PF05193" /note="HMMPfam hit to PF05193, Peptidase M16 inactive domain, score 0.00018" gene complement(63659..64522) /locus_tag="SEQ_0051" /db_xref="GeneID:7697466" CDS complement(63659..64522) /locus_tag="SEQ_0051" /codon_start=1 /transl_table=11 /product="regulatory protein" /protein_id="YP_002745479.1" /db_xref="GI:225869532" /db_xref="GeneID:7697466" /translation="MILGETYRKMREEKGISISSLAGYEISKSQISRFELGETEISIF KLLYLLEKLGITFEEFLLACNNYEPSEFNTLIKAVQNSAYNNKVETLISMIEQENKLF EETNSHYHKLNSIFIQSIISGLDNNHQLTNQDISYLSNYLFSLENWGYYETLILGNCC RSLPPKLLFKYTKEALKKGKLYNSIPRNKQSLIQLLLNSLLLMIENDFYEEAIFLNQA SKNLLSNSTYFFELTILLYLEGYLELKFNIHTEKSNSKIEEALKIFNSLNKTIYQNYQ EHFNKYISNLL" misc_feature complement(64343..64504) /locus_tag="SEQ_0051" /inference="protein motif:PFAM:PF01381" /note="HMMPfam hit to PF01381, Helix-turn-helix, score 2.2e-05" repeat_region 64957..64976 /note="20mer direct repeat" gene 65158..66642 /locus_tag="SEQ_0052" /db_xref="GeneID:7697467" CDS 65158..66642 /locus_tag="SEQ_0052" /codon_start=1 /transl_table=11 /product="threonine synthase" /protein_id="YP_002745480.1" /db_xref="GI:225869533" /db_xref="GeneID:7697467" /translation="MPMMYQSTRNAANKVTASQAILSGLADDGGLFTPTSMPVLDLDF EELKTKSYQEVAKLILSAFFDDYTEAELDACISSAYDDKFDTAVIAPLATLKDYHNLE LFHGSTIAFKDMALSILPYLLTTAAKKQGVERKIAILTATSGDTGKAAMAGFVDVPGT DIIVFYPKSGVSRIQELQMITQAGHNTHVVAIEGNFDDAQTEVKRLFNDPDLRERLAA QQIQLSSANSMNIGRLIPQVVYYIYAYAQLVRHQRLEAGETINIVVPTGNFGNLLVAY YAKEIGLPVAKFICASNENNVLTDFFASGRYDKKRPFKVTTSPSMDILVSSNLERLVF YLLGNDAQKTAVLMKSLAETGQYQLADADQSILDLFAAGFATEQETAKEIKTIFESDH YVLDPHTAVASAVYRAYREQSGDSRPTIVASTASPYKFPRVVVEAISGQQVASDFEAL EQLADISGVVVPQAVNGLQEAPIRHSLLVTVADMQQAVEAYLGV" misc_feature 65404..66276 /locus_tag="SEQ_0052" /inference="protein motif:PFAM:PF00291" /note="HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 3.8e-08" misc_feature 65461..65505 /locus_tag="SEQ_0052" /inference="protein motif:Prosite:PS00165" /note="PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site." gene 66673..67983 /locus_tag="SEQ_0053" /db_xref="GeneID:7697468" CDS 66673..67983 /locus_tag="SEQ_0053" /codon_start=1 /transl_table=11 /product="multi antimicrobial extrusion (MATE) family transporter" /protein_id="YP_002745481.1" /db_xref="GI:225869534" /db_xref="GeneID:7697468" /translation="MNIMTHNRKKILSLALPSMAENILQMLMGMIDNYLAAQIGLTAV SGIAIANNILTIYQALFIALGAAVSSLIARSVGEQNHSKEIDYMANAILVTGALSVLL GLMSVVGHKSILAFLGAASLVARLGGQYLAIVGGMILSLGLFTSLGAIIRAKGQPSIP MKVSLLTNLLNAVFSALSLYIWGFGVIGIAWSTVASRLIGVVILCHFLPIKEIIKRFA NPLDKEIFSLSLPAAGERLMMRAGDVLIVTIIVRFGTEALAGNAIGETLTQFNYMPGL AMSTATVILVANQLGSGKGATIAKTVKETFLLATLMMLVMGLITYLLGPNLLPLFTAD AKAQQAGMVVLVFSLLGVPATAGTLVYTAAWQGIGQAKLPFYATTIGMWLVRISLGYF IGVTLNYGVIGVWLATILDNATRWLILAVAFKKQQRQLFSDCHS" misc_feature 66721..67203 /locus_tag="SEQ_0053" /inference="protein motif:PFAM:PF01554" /note="HMMPfam hit to PF01554, MatE, score 9e-21" misc_feature join(66751..66819,66829..66897,66931..66999,67057..67125, 67159..67218,67228..67296,67588..67656,67699..67767, 67831..67899) /locus_tag="SEQ_0053" /inference="protein motif:TMHMM 2.0" /note="9 transmembrane helices predicted for SEQ0053 by TMHMM2.0 at aa 27-49, 53-75, 87-109, 129-151, 163-182, 186-208, 306-328, 343-365 and 387-409" misc_feature 67363..67848 /locus_tag="SEQ_0053" /inference="protein motif:PFAM:PF01554" /note="HMMPfam hit to PF01554, MatE, score 1.3e-27" gene 68363..68671 /gene="rpsJ" /locus_tag="SEQ_0054" /db_xref="GeneID:7697469" CDS 68363..68671 /gene="rpsJ" /locus_tag="SEQ_0054" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S10" /protein_id="YP_002745482.1" /db_xref="GI:225869535" /db_xref="GeneID:7697469" /translation="MANKKIRIRLKAYEHRTLDTAAEKIVETATRTGATVAGPVPLPT ERSLYTIIRATHKYKDSREQFEMRTHKRLIDIVNPTQKTVDALMKLDLPSGVNVEIKL" misc_feature 68375..68662 /gene="rpsJ" /locus_tag="SEQ_0054" /inference="protein motif:PFAM:PF00338" /note="HMMPfam hit to PF00338, Ribosomal protein S10p/S20e, score 7.5e-60" misc_feature 68447..68494 /gene="rpsJ" /locus_tag="SEQ_0054" /inference="protein motif:Prosite:PS00361" /note="PS00361 Ribosomal protein S10 signature." gene 68969..69595 /gene="rplC" /locus_tag="SEQ_0055" /db_xref="GeneID:7697470" CDS 68969..69595 /gene="rplC" /locus_tag="SEQ_0055" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L3" /protein_id="YP_002745483.1" /db_xref="GI:225869536" /db_xref="GeneID:7697470" /translation="MTKGILGEKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETD GYEAIQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNIEGLEVGAEITVDIFAA GDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVSPNRVFKNKHLAG RMGGNRVTIQNLEIVQVIPEKNVILIKGNVPGAKKSLITIKSAVKAAK" misc_feature 68993..69571 /gene="rplC" /locus_tag="SEQ_0055" /inference="protein motif:PFAM:PF00297" /note="HMMPfam hit to PF00297, Ribosomal protein L3, score 1.7e-92" misc_feature 69266..69337 /gene="rplC" /locus_tag="SEQ_0055" /inference="protein motif:Prosite:PS00474" /note="PS00474 Ribosomal protein L3 signature." gene 69620..70243 /gene="rplD" /locus_tag="SEQ_0056" /db_xref="GeneID:7697471" CDS 69620..70243 /gene="rplD" /locus_tag="SEQ_0056" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L4" /protein_id="YP_002745484.1" /db_xref="GI:225869537" /db_xref="GeneID:7697471" /translation="MANVKLFDQTGKEVSTVELNDDIFGIEPNESVVFDVVISQRASL RQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLP QKVRRLALKSVYSAKVAEDKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGN EFAALSARNLPNVAVATAATASVLDIVNADKLLVTKEAISTIEEVLA" misc_feature 69665..70234 /gene="rplD" /locus_tag="SEQ_0056" /inference="protein motif:PFAM:PF00573" /note="HMMPfam hit to PF00573, Ribosomal protein L4/L1 family, score 2.4e-72" gene 70243..70539 /gene="rplW" /locus_tag="SEQ_0057" /db_xref="GeneID:7697472" CDS 70243..70539 /gene="rplW" /locus_tag="SEQ_0057" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L23" /protein_id="YP_002745485.1" /db_xref="GI:225869538" /db_xref="GeneID:7697472" /translation="MNLYDVIKKPVITEKSMYALEEGKYTFEVDTRAHKLLIKQAVEA AFDGVKVASVNTVNVKPKAKRVGRYTGFTSKTKKAIITLTADSKAIELFAVEAE" misc_feature 70252..70527 /gene="rplW" /locus_tag="SEQ_0057" /inference="protein motif:PFAM:PF00276" /note="HMMPfam hit to PF00276, Ribosomal protein L23, score 3.1e-32" misc_feature 70471..70518 /gene="rplW" /locus_tag="SEQ_0057" /inference="protein motif:Prosite:PS00050" /note="PS00050 Ribosomal protein L23 signature." gene 70557..71390 /gene="rplB" /locus_tag="SEQ_0058" /db_xref="GeneID:7697473" CDS 70557..71390 /gene="rplB" /locus_tag="SEQ_0058" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L2" /protein_id="YP_002745486.1" /db_xref="GI:225869539" /db_xref="GeneID:7697473" /translation="MGIKVYKPTTNGRRNMTSLDFAEITTSTPEKSLLVSLKNKAGRN NNGRITVRHQGGGHKRHYRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGVKA YIIAPKGLEVGQRIVSGPDADIKVGNALPLVNIPVGTVVHNIELKPGKGGELVRAAGA SAQVLGQEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQQSLVNIGKAGRSRWKGIRP TVRGSVMNPNDHPHGGGEGKAPVGRKAPSTPWGKPALGLKTRNKKAKSNKLLVRRRNE K" misc_feature 70680..70910 /gene="rplB" /locus_tag="SEQ_0058" /inference="protein motif:PFAM:PF00181" /note="HMMPfam hit to PF00181, Ribosomal Proteins L2, RNA binding dom, score 8e-48" misc_feature 70926..71315 /gene="rplB" /locus_tag="SEQ_0058" /inference="protein motif:PFAM:PF03947" /note="HMMPfam hit to PF03947, Ribosomal Proteins L2, C-terminal doma, score 8.8e-87" misc_feature 71208..71243 /gene="rplB" /locus_tag="SEQ_0058" /inference="protein motif:Prosite:PS00467" /note="PS00467 Ribosomal protein L2 signature." gene 71502..71780 /gene="rpsS" /locus_tag="SEQ_0059" /db_xref="GeneID:7697474" CDS 71502..71780 /gene="rpsS" /locus_tag="SEQ_0059" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S19" /protein_id="YP_002745487.1" /db_xref="GI:225869540" /db_xref="GeneID:7697474" /translation="MGRSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSF IGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR" misc_feature 71508..71750 /gene="rpsS" /locus_tag="SEQ_0059" /inference="protein motif:PFAM:PF00203" /note="HMMPfam hit to PF00203, Ribosomal protein S19, score 3.1e-51" misc_feature 71658..71732 /gene="rpsS" /locus_tag="SEQ_0059" /inference="protein motif:Prosite:PS00323" /note="PS00323 Ribosomal protein S19 signature." gene 71796..72140 /gene="rplV" /locus_tag="SEQ_0060" /db_xref="GeneID:7697475" CDS 71796..72140 /gene="rplV" /locus_tag="SEQ_0060" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L22" /protein_id="YP_002745488.1" /db_xref="GI:225869541" /db_xref="GeneID:7697475" /translation="MAEITSAKAMARTVRVSPRKTRLVLDLIRGKKVADAIAILKFTP NKAARVIEKTLNSAIANAENNFGLEKANLVVSETFANEGPTMKRFRPRAKGSASPINK RTTHVTVVVSEK" misc_feature 71820..72134 /gene="rplV" /locus_tag="SEQ_0060" /inference="protein motif:PFAM:PF00237" /note="HMMPfam hit to PF00237, Ribosomal protein L22p/L17e, score 2.3e-60" misc_feature 72054..72128 /gene="rplV" /locus_tag="SEQ_0060" /inference="protein motif:Prosite:PS00464" /note="PS00464 Ribosomal protein L22 signature." gene 72153..72806 /gene="rpsC" /locus_tag="SEQ_0061" /db_xref="GeneID:7696913" CDS 72153..72806 /gene="rpsC" /locus_tag="SEQ_0061" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S3" /protein_id="YP_002745489.1" /db_xref="GI:225869542" /db_xref="GeneID:7696913" /translation="MGQKVHPIGMRVGIIRDWDAKWYAEKEYADYLHEDLAIRKFINK ELAEASVSTIEIERAVNKVIVSLHTAKPGMVIGKGGANVDALRAQLNKLTGKQVHINI IEIKQPDLDAHLVGENIARQLEQRVAFRRAQKQAIQRTMRAGAKGIKTQVSGRLNGAD IARSEGYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEVLPARKNTKGGK" misc_feature 72156..72335 /gene="rpsC" /locus_tag="SEQ_0061" /inference="protein motif:PFAM:PF00417" /note="HMMPfam hit to PF00417, Ribosomal protein S3, N-terminal domai, score 4.9e-29" misc_feature 72336..72500 /gene="rpsC" /locus_tag="SEQ_0061" /inference="protein motif:PFAM:PF07650" /note="HMMPfam hit to PF07650, KH domain, score 4.8e-23" misc_feature 72504..72755 /gene="rpsC" /locus_tag="SEQ_0061" /inference="protein motif:PFAM:PF00189" /note="HMMPfam hit to PF00189, Ribosomal protein S3, C-terminal domai, score 1.4e-50" misc_feature 72636..72740 /gene="rpsC" /locus_tag="SEQ_0061" /inference="protein motif:Prosite:PS00548" /note="PS00548 Ribosomal protein S3 signature." gene 72810..73223 /gene="rplP" /locus_tag="SEQ_0062" /db_xref="GeneID:7695497" CDS 72810..73223 /gene="rplP" /locus_tag="SEQ_0062" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L16" /protein_id="YP_002745490.1" /db_xref="GI:225869543" /db_xref="GeneID:7695497" /translation="MLVPKRVKHRREFRGKMRGEAKGGKEVSFGEYGLQATTSSWITN RQIEAARIAMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKV MFEVAGVSEEIAREALRLASHKLPVKCKFVKREAE" misc_feature 72810..73205 /gene="rplP" /locus_tag="SEQ_0062" /inference="protein motif:PFAM:PF00252" /note="HMMPfam hit to PF00252, Ribosomal protein L16, score 1.2e-82" misc_feature 72984..73019 /gene="rplP" /locus_tag="SEQ_0062" /inference="protein motif:Prosite:PS00586" /note="PS00586 Ribosomal protein L16 signature 1." misc_feature 73053..73088 /gene="rplP" /locus_tag="SEQ_0062" /inference="protein motif:Prosite:PS00701" /note="PS00701 Ribosomal protein L16 signature 2." gene 73233..73439 /locus_tag="SEQ_0063" /db_xref="GeneID:7695498" CDS 73233..73439 /locus_tag="SEQ_0063" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L29" /protein_id="YP_002745491.1" /db_xref="GI:225869544" /db_xref="GeneID:7695498" /translation="MKLEEIKKFVAELRGLSQEELAKKENELKKELFDLRFQAAAGQL DQTARLNEVKKQIARVKTVQSEMK" misc_feature 73260..73433 /locus_tag="SEQ_0063" /inference="protein motif:PFAM:PF00831" /note="HMMPfam hit to PF00831, Ribosomal L29 protein, score 2.1e-28" gene 73467..73727 /gene="rpsQ" /locus_tag="SEQ_0064" /db_xref="GeneID:7695499" CDS 73467..73727 /gene="rpsQ" /locus_tag="SEQ_0064" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S17" /protein_id="YP_002745492.1" /db_xref="GI:225869545" /db_xref="GeneID:7695499" /translation="MERNQRKTLVGRVVSDKMDKTITVIVETKRNHPVYGKRINYSKK YKAHDEKNLAKEGDIVRIMETRPLSATKRFRLVEIVEEAVII" misc_feature 73497..73703 /gene="rpsQ" /locus_tag="SEQ_0064" /inference="protein motif:PFAM:PF00366" /note="HMMPfam hit to PF00366, Ribosomal protein S17, score 1.6e-36" misc_feature 73635..73673 /gene="rpsQ" /locus_tag="SEQ_0064" /inference="protein motif:Prosite:PS00056" /note="PS00056 Ribosomal protein S17 signature." gene 73752..74120 /gene="rplN" /locus_tag="SEQ_0065" /db_xref="GeneID:7695500" CDS 73752..74120 /gene="rplN" /locus_tag="SEQ_0065" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L14" /protein_id="YP_002745493.1" /db_xref="GI:225869546" /db_xref="GeneID:7695500" /translation="MIQQETRLKVADNSGAREILTIKVLGGSGRKFANIGDVIVASVK QATPGGAVKKGDVVKAVIVRTKSGARRPDGSYIKFDDNAAVIIRDDKTPRGTRIFGPV ARELREGGYMKIVSLAPEVL" misc_feature 73929..74009 /gene="rplN" /locus_tag="SEQ_0065" /inference="protein motif:Prosite:PS00049" /note="PS00049 Ribosomal protein L14 signature." gene 74204..74509 /gene="rplX" /locus_tag="SEQ_0066" /db_xref="GeneID:7695501" CDS 74204..74509 /gene="rplX" /locus_tag="SEQ_0066" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L24" /protein_id="YP_002745494.1" /db_xref="GI:225869547" /db_xref="GeneID:7695501" /translation="MFVKKGDKVRVIAGKDKGVEAVVLKALPKVNKVIVEGVAIIKKH QKPNSENPQGAIVEKEAPIHASNVQVLDKNGVAGRVGYKFVDGKKVRYNKKSGEVLD" misc_feature 74210..74311 /gene="rplX" /locus_tag="SEQ_0066" /inference="protein motif:PFAM:PF00467" /note="HMMPfam hit to PF00467, KOW motif, score 6.6e-09" misc_feature 74219..74272 /gene="rplX" /locus_tag="SEQ_0066" /inference="protein motif:Prosite:PS01108" /note="PS01108 Ribosomal protein L24 signature." gene 74533..75075 /gene="rplE" /locus_tag="SEQ_0067" /db_xref="GeneID:7695502" CDS 74533..75075 /gene="rplE" /locus_tag="SEQ_0067" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L5" /protein_id="YP_002745495.1" /db_xref="GI:225869548" /db_xref="GeneID:7695502" /translation="MANRLKEKYTNEVIPALTEKFNYTSVMAVPKVEKIVLNMGVGDA VSNAKNLEKAAAELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLD KLVSVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFDDVDKVRGLDIVIVTT ANTDEESRELLKGLGMPFAK" misc_feature 74605..74775 /gene="rplE" /locus_tag="SEQ_0067" /inference="protein motif:PFAM:PF00281" /note="HMMPfam hit to PF00281, Ribosomal protein L5, score 7.2e-30" misc_feature 74704..74754 /gene="rplE" /locus_tag="SEQ_0067" /inference="protein motif:Prosite:PS00358" /note="PS00358 Ribosomal protein L5 signature." misc_feature 74785..75069 /gene="rplE" /locus_tag="SEQ_0067" /inference="protein motif:PFAM:PF00673" /note="HMMPfam hit to PF00673, ribosomal L5P family C-terminus, score 5.9e-53" gene 75091..75276 /gene="rpsN" /locus_tag="SEQ_0068" /db_xref="GeneID:7695503" CDS 75091..75276 /gene="rpsN" /locus_tag="SEQ_0068" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S14" /protein_id="YP_002745496.1" /db_xref="GI:225869549" /db_xref="GeneID:7695503" /translation="MAKKSMIAKNKRPAKYSTQAYTRCEKCGRPHSVYRKFKLCRVCF RELAYKGQIPGVVKASW" misc_feature 75103..75270 /gene="rpsN" /locus_tag="SEQ_0068" /inference="protein motif:PFAM:PF00253" /note="HMMPfam hit to PF00253, Ribosomal protein S14p/S29e, score 9.7e-20" misc_feature 75157..75225 /gene="rpsN" /locus_tag="SEQ_0068" /inference="protein motif:Prosite:PS00527" /note="PS00527 Ribosomal protein S14 signature." gene 75609..76007 /gene="rpsH" /locus_tag="SEQ_0069" /db_xref="GeneID:7695504" CDS 75609..76007 /gene="rpsH" /locus_tag="SEQ_0069" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S8" /protein_id="YP_002745497.1" /db_xref="GI:225869550" /db_xref="GeneID:7695504" /translation="MVMTDPIADFLTRIRNANQVKHEVLEVPASNIKKGIAEILKREG FIKNVEVIEDGKQGIIRVFLKYGQNGERVITNLKRVSKPGLRIYSKREDVPKVLNGLG IAIISTSEGLLTDKEARQKNVGGEVIAYVW" misc_feature 75621..76004 /gene="rpsH" /locus_tag="SEQ_0069" /inference="protein motif:PFAM:PF00410" /note="HMMPfam hit to PF00410, Ribosomal protein S8, score 4.8e-76" misc_feature 75912..75965 /gene="rpsH" /locus_tag="SEQ_0069" /inference="protein motif:Prosite:PS00053" /note="PS00053 Ribosomal protein S8 signature." gene 76329..76865 /gene="rplF" /locus_tag="SEQ_0070" /db_xref="GeneID:7695505" CDS 76329..76865 /gene="rplF" /locus_tag="SEQ_0070" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L6" /protein_id="YP_002745498.1" /db_xref="GI:225869551" /db_xref="GeneID:7695505" /translation="MSRIGNKVIIIPAGVEIINNDNVVTVKGPKGELTREFNKNIEIK VEGNEMTLVRPDDSKEMKTIHGTTRANLNNMVVGVSEGFKKELEMKGVGYRAQLQGSK LVLSVGKSHQDEVEAPEGITFTVANPTSISVEGINKEVVGQTAAYIRSLRSPEPYKGK GIRYVGEYVRLKEGKTGK" misc_feature 76359..76574 /gene="rplF" /locus_tag="SEQ_0070" /inference="protein motif:PFAM:PF00347" /note="HMMPfam hit to PF00347, Ribosomal protein L6, score 1.5e-24" misc_feature 76596..76823 /gene="rplF" /locus_tag="SEQ_0070" /inference="protein motif:PFAM:PF00347" /note="HMMPfam hit to PF00347, Ribosomal protein L6, score 2.2e-30" misc_feature 76788..76814 /gene="rplF" /locus_tag="SEQ_0070" /inference="protein motif:Prosite:PS00525" /note="PS00525 Ribosomal protein L6 signature 1." gene 76968..77324 /gene="rplR" /locus_tag="SEQ_0071" /db_xref="GeneID:7695506" CDS 76968..77324 /gene="rplR" /locus_tag="SEQ_0071" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L18" /protein_id="YP_002745499.1" /db_xref="GI:225869552" /db_xref="GeneID:7695506" /translation="MISKPDKNKIRQKRHRRVRGKLSGTADRPRLNVFRSNTGIYAQV IDDVAGVTLASASTLDKEVSKGTKTEQAVVVGKLVAERAVAKGISEVVFDRGGYLYHG RVKALADAARENGLKF" misc_feature 76983..77321 /gene="rplR" /locus_tag="SEQ_0071" /inference="protein motif:PFAM:PF00861" /note="HMMPfam hit to PF00861, Ribosomal L18p/L5e family, score 7.2e-56" gene 77343..77837 /gene="rpsE" /locus_tag="SEQ_0072" /db_xref="GeneID:7695507" CDS 77343..77837 /gene="rpsE" /locus_tag="SEQ_0072" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S5" /protein_id="YP_002745500.1" /db_xref="GI:225869553" /db_xref="GeneID:7695507" /translation="MAFKDNAVELEERVVAINRVTKVVKGGRRLRFAALVVVGDGNGH VGFGTGKAQEVPEAIRKAVEAAKKSMIEVPMVGTTIPHEVYTNFGGAKVLLKPAVEGS GVAAGGAVRAVIELAGIADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGISV SDLA" misc_feature 77367..77567 /gene="rpsE" /locus_tag="SEQ_0072" /inference="protein motif:PFAM:PF00333" /note="HMMPfam hit to PF00333, Ribosomal protein S5, N-terminal domai, score 1.3e-42" misc_feature 77421..77519 /gene="rpsE" /locus_tag="SEQ_0072" /inference="protein motif:Prosite:PS00585" /note="PS00585 Ribosomal protein S5 signature." misc_feature 77526..77573 /gene="rpsE" /locus_tag="SEQ_0072" /inference="protein motif:Prosite:PS00589" /note="PS00589 PTS HPR component serine phosphorylation site signature." misc_feature 77592..77813 /gene="rpsE" /locus_tag="SEQ_0072" /inference="protein motif:PFAM:PF03719" /note="HMMPfam hit to PF03719, Ribosomal protein S5, C-terminal domai, score 6.2e-35" gene 77852..78034 /gene="rpmD" /locus_tag="SEQ_0073" /db_xref="GeneID:7695508" CDS 77852..78034 /gene="rpmD" /locus_tag="SEQ_0073" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L30" /protein_id="YP_002745501.1" /db_xref="GI:225869554" /db_xref="GeneID:7695508" /translation="MAQIKITLTKSPIGRKPEQRKTVVALGLGKLNSSVIKEDNAAIR GMVTAISHLVTVEDVK" misc_feature 77855..78013 /gene="rpmD" /locus_tag="SEQ_0073" /inference="protein motif:PFAM:PF00327" /note="HMMPfam hit to PF00327, Ribosomal protein L30p/L7e, score 2.8e-14" misc_feature 77915..78013 /gene="rpmD" /locus_tag="SEQ_0073" /inference="protein motif:Prosite:PS00634" /note="PS00634 Ribosomal protein L30 signature." gene 78236..78676 /gene="rplO" /locus_tag="SEQ_0074" /db_xref="GeneID:7695509" CDS 78236..78676 /gene="rplO" /locus_tag="SEQ_0074" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L15" /protein_id="YP_002745502.1" /db_xref="GI:225869555" /db_xref="GeneID:7695509" /translation="MKLHELKPAKGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGG GVRLGFEGGQTPLFRRIPKRGFTNINTKEYALVNLDQLNAFEDGTEVTPVVLKEAGIV RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI" misc_feature 78236..78541 /gene="rplO" /locus_tag="SEQ_0074" /inference="protein motif:PFAM:PF01305" /note="HMMPfam hit to PF01305, Ribosomal protein L15 amino terminal re, score 5.3e-59" misc_feature 78563..78658 /gene="rplO" /locus_tag="SEQ_0074" /inference="protein motif:PFAM:PF00256" /note="HMMPfam hit to PF00256, Ribosomal protein L15, score 3.1e-11" misc_feature 78563..78655 /gene="rplO" /locus_tag="SEQ_0074" /inference="protein motif:Prosite:PS00475" /note="PS00475 Ribosomal protein L15 signature." gene 78693..79997 /gene="secY" /locus_tag="SEQ_0075" /db_xref="GeneID:7695510" CDS 78693..79997 /gene="secY" /locus_tag="SEQ_0075" /codon_start=1 /transl_table=11 /product="preprotein translocase SecY subunit" /protein_id="YP_002745503.1" /db_xref="GI:225869556" /db_xref="GeneID:7695510" /translation="MFLKILKDALKIKNVRNKIFFTIFIILIFRIGTHITVPGVNAKS LEQLSELPFLNMLNLVSGNAMRNFSVFSMGVSPYITASIVVQLLQMDILPKFVEWGKQ GEVGRRKLNQATRYISLVLAFAQSIGITAGFNTLSSVALVKTPDVRTYLLIGALLTTG SVIVTWLGEQITDKGFGNGVSMIIFAGIISSIPNAIATIREDYFVNVKSGDLQSSYIV VGILILAVLAIVFFTTYVQQAEYKIPIQYTKLVQGAPTSSYLPLKVNPAGVIPVIFAS SITTIPSTIIPFFQNGRDIPWLTTLQGIFNYQSPTGMIVYALLIILFSFFYTFVQVNP EKTAENLQKNSSYIPSVRPGRETEEFMSSLLKKLATVGAIFLAFISLVPIAAQQALNL SSSIALGGTSLLILISTGIEGMKQLEGYLLKRKYVGFMNITE" sig_peptide 78693..78818 /gene="secY" /locus_tag="SEQ_0075" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0075 by SignalP 2.0 HMM (Signal peptide probability 0.935) with cleavage site probability 0.860 between residues 42 and 43" misc_feature join(78750..78818,78888..78956,79041..79109,79137..79196, 79215..79283,79326..79394,79491..79559,79602..79670, 79794..79862,79875..79934) /gene="secY" /locus_tag="SEQ_0075" /inference="protein motif:TMHMM 2.0" /note="10 transmembrane helices predicted for SEQ0075 by TMHMM2.0 at aa 20-42, 66-88, 117-139, 149-168, 175-197, 212-234, 267-289, 304-326, 368-390 and 395-414" misc_feature 78897..79940 /gene="secY" /locus_tag="SEQ_0075" /inference="protein motif:PFAM:PF00344" /note="HMMPfam hit to PF00344, eubacterial secY protein, score 5.7e-167" misc_feature 78897..78956 /gene="secY" /locus_tag="SEQ_0075" /inference="protein motif:Prosite:PS00755" /note="PS00755 Protein secY signature 1." misc_feature 79188..79244 /gene="secY" /locus_tag="SEQ_0075" /inference="protein motif:Prosite:PS00756" /note="PS00756 Protein secY signature 2." misc_feature 79212..79268 /gene="secY" /locus_tag="SEQ_0075" /inference="protein motif:Prosite:PS00095" /note="PS00095 C-5 cytosine-specific DNA methylases C-terminal signature." gene 80149..80790 /locus_tag="SEQ_0076" /db_xref="GeneID:7695511" CDS 80149..80790 /locus_tag="SEQ_0076" /EC_number="2.7.4.3" /codon_start=1 /transl_table=11 /product="adenylate kinase" /protein_id="YP_002745504.1" /db_xref="GI:225869557" /db_xref="GeneID:7695511" /translation="MNLLIMGLPGAGKGTQAAKIVETFELIHISTGDMFRAAMANQTE MGVLAKSYIDKGDLVPDEVTNGIVKERLAQADIKEKGFLLDGYPRTIEQAHALDETLK ALGLTLDGVINIEVDPASLIDRLSGRIINKKTGETFHKIFNPPVGDYKEEDFYQREDD KPETVKRRLDVNIAQGEPIIKHYRQAGIVRDIDGNKDISEVFADIKKVIENLK" misc_feature 80161..80712 /locus_tag="SEQ_0076" /inference="protein motif:PFAM:PF00406" /note="HMMPfam hit to PF00406, Adenylate kinase, score 2e-86" misc_feature 80392..80427 /locus_tag="SEQ_0076" /inference="protein motif:Prosite:PS00113" /note="PS00113 Adenylate kinase signature." gene 80908..81126 /gene="infA" /locus_tag="SEQ_0077" /db_xref="GeneID:7695512" CDS 80908..81126 /gene="infA" /locus_tag="SEQ_0077" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="YP_002745505.1" /db_xref="GI:225869558" /db_xref="GeneID:7695512" /translation="MAKEDVIEIEGKVVETMPNAMFTVELENGHQILATVSGKIRKNY IRILVGDRVTVEMSPYDLTRGRITYRFK" misc_feature 80911..81123 /gene="infA" /locus_tag="SEQ_0077" /inference="protein motif:PFAM:PF00575" /note="HMMPfam hit to PF00575, S1 RNA binding domain, score 3.2e-13" misc_feature 80920..81117 /gene="infA" /locus_tag="SEQ_0077" /inference="protein motif:PFAM:PF01176" /note="HMMPfam hit to PF01176, Translation initiation factor 1A / IF-1, score 1.5e-35" gene 81152..81268 /gene="rpmJ" /locus_tag="SEQ_0078" /db_xref="GeneID:7695513" CDS 81152..81268 /gene="rpmJ" /locus_tag="SEQ_0078" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L36" /protein_id="YP_002745506.1" /db_xref="GI:225869559" /db_xref="GeneID:7695513" /translation="MKVRPSVKPICEYCKVIRRNGRVMVICPTNPKHKQRQG" misc_feature 81182..81262 /gene="rpmJ" /locus_tag="SEQ_0078" /inference="protein motif:Prosite:PS00828" /note="PS00828 Ribosomal protein L36 signature." gene 81286..81651 /gene="rpsM" /locus_tag="SEQ_0079" /db_xref="GeneID:7695514" CDS 81286..81651 /gene="rpsM" /locus_tag="SEQ_0079" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S13" /protein_id="YP_002745507.1" /db_xref="GI:225869560" /db_xref="GeneID:7695514" /translation="MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIR VKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNT KNNARTRKGKAVAIAGKKK" misc_feature 81292..81609 /gene="rpsM" /locus_tag="SEQ_0079" /inference="protein motif:PFAM:PF00416" /note="HMMPfam hit to PF00416, Ribosomal protein S13/S18, score 5.3e-55" misc_feature 81544..81585 /gene="rpsM" /locus_tag="SEQ_0079" /inference="protein motif:Prosite:PS00646" /note="PS00646 Ribosomal protein S13 signature." gene 81669..82052 /locus_tag="SEQ_0080" /db_xref="GeneID:7695515" CDS 81669..82052 /locus_tag="SEQ_0080" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S11" /protein_id="YP_002745508.1" /db_xref="GI:225869561" /db_xref="GeneID:7695515" /translation="MAKPTRKRRVKKNIESGVAHIHATFNNTIVMITDVHGNALAWSS AGALGFKGSRKSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAG LEVTAIRDVTPVPHNGARPPKRRRV" misc_feature 81717..82046 /locus_tag="SEQ_0080" /inference="protein motif:PFAM:PF00411" /note="HMMPfam hit to PF00411, Ribosomal protein S11, score 2.1e-72" misc_feature 81951..82019 /locus_tag="SEQ_0080" /inference="protein motif:Prosite:PS00054" /note="PS00054 Ribosomal protein S11 signature." gene 82099..83037 /locus_tag="SEQ_0081" /db_xref="GeneID:7695516" CDS 82099..83037 /locus_tag="SEQ_0081" /EC_number="2.7.7.6" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase alpha chain" /protein_id="YP_002745509.1" /db_xref="GI:225869562" /db_xref="GeneID:7695516" /translation="MIEFEKPIITKIDENKDYGRFVIEPLERGYGTTLGNSLRRVLLS SLPGAAVTSIRIDGVLHEFDTIPGVREDVMQIILNVKGLAVKSYVEDEKIIELDVEGP AEVTAGDILTDSDIELVNPDHYLFTIADGYTLKASMTVAKKRGYVPAEGNKKDDAPVG TLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIMTNGTIIPEDALGLSARVLIEH LNLFTDLTDVAKATEVMKEAEKVNDEKVLDRTIEELDLSVRSYNCLKRAGINTVFDLT EKSEPEMMKVRNLGRKSLEEVKVKLADLGLGLKNDK" misc_feature 82138..82770 /locus_tag="SEQ_0081" /inference="protein motif:PFAM:PF01193" /note="HMMPfam hit to PF01193, RNA polymerase Rpb3/Rpb11 dimerisation, score 6e-26" misc_feature 82258..82605 /locus_tag="SEQ_0081" /inference="protein motif:PFAM:PF01000" /note="HMMPfam hit to PF01000, RNA polymerase Rpb3/RpoA insert domain, score 1.5e-55" misc_feature 82804..83007 /locus_tag="SEQ_0081" /inference="protein motif:PFAM:PF03118" /note="HMMPfam hit to PF03118, Bacterial RNA polymerase, alpha chain C, score 1.3e-31" gene 83052..83438 /gene="rplQ" /locus_tag="SEQ_0082" /db_xref="GeneID:7695517" CDS 83052..83438 /gene="rplQ" /locus_tag="SEQ_0082" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L17" /protein_id="YP_002745510.1" /db_xref="GI:225869563" /db_xref="GeneID:7695517" /translation="MAYRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTV EKMITLGKRGDLHARRQAAAYVRNEIASENYDEATDKYTSTTALQKLFSEIAPRYAER NGGYTRILKTEPRRGDAAPMAIIELV" misc_feature 83097..83435 /gene="rplQ" /locus_tag="SEQ_0082" /inference="protein motif:PFAM:PF01196" /note="HMMPfam hit to PF01196, Ribosomal protein L17, score 1.7e-62" misc_feature 83139..83207 /gene="rplQ" /locus_tag="SEQ_0082" /inference="protein motif:Prosite:PS01167" /note="PS01167 Ribosomal protein L17 signature." gene complement(83656..83887) /locus_tag="SEQ_0083" /pseudo /db_xref="GeneID:7695518" misc_feature complement(83656..83887) /locus_tag="SEQ_0083" /note="Similar to the C-terminal region of Streptococcus mutans transposase UniProt:Q8DTK6 (EMBL:AE014133 (46 aa) blastp scores: E()=5e-04" /pseudo gene 84743..85993 /locus_tag="SEQ_0084" /db_xref="GeneID:7695519" CDS 84743..85993 /locus_tag="SEQ_0084" /note="Possible gene remnant. Similar to the N-terminal regions of several proteins, including Staphylococcus aureus hypothetical protein. UniProt:Q99W16 (EMBL:BA000017 (464 aa) fasta scores: E()=2.3e-15, 28.804% id in 368 aa. Similar to the N-terminal region of SEQ1361, 38.717% identity (41.266% ungapped) in 421 aa overlap (1-410:1-406)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745511.1" /db_xref="GI:225869564" /db_xref="GeneID:7695519" /translation="MSIDMYLSLSEEQAQSVEAVLARRQTAYQSLQETLIQLISNSPD LSGRTYDSAKAYSSQVLIPLLKGCMLLDEAIITACKRLPSEYRSQVDQIDLKESDLVE RIAQFDHVIGRYMDLISIEYSREEPSYSYISHLRSAEQLHRAVKRRLEEILRRLRHFD TNSVHLFSTIQTLAAAVQIGMRQARTSWHAGSQVFVISEDMAWADTINSKWSKSKGLS YLSDYVYDPDVLSKRAAINHSWIKTGYTMSKNFGKAVSKDYTKASFLSYGKAAKATGW TSMAVDTGITSVREYNKKNSRAYGSEGKALIHASVAQIKSMGPIEGAIIGSKAGPWGA LMGFVTGGINVTWGVVHPESKDNMFLWIQDKMDDVYDSIVQTDLGKGTHHAKESVKGH IGRAIVRTWDFVSQSFGKGVGYDI" gene 85983..86858 /locus_tag="SEQ_0085" /pseudo /db_xref="GeneID:7695520" misc_feature 85983..86858 /locus_tag="SEQ_0085" /note="CDS contains a nonsense mutation (amber) after codon 115" /pseudo /db_xref="PSEUDO:CAW92020.1" misc_feature join(86109..86168,86250..86318) /locus_tag="SEQ_0085" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0085 by TMHMM2.0 at aa 43-62 and 90-112" /pseudo gene 86664..86732 /locus_tag="SEQ_0086" /db_xref="GeneID:7695521" misc_feature 86664..86732 /locus_tag="SEQ_0086" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0086 by TMHMM2.0 at aa 73-95" gene 86879..87172 /locus_tag="SEQ_0087" /db_xref="GeneID:7695522" CDS 86879..87172 /locus_tag="SEQ_0087" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745512.1" /db_xref="GI:225869565" /db_xref="GeneID:7695522" /translation="MQKELLPLGSVVYLEGATSKLMIVGRGPIFESNGQNVYSDYVGV MYPEGINPEDAIFFNHEDIAKTVFEGFKDEEEQRFLEVYSDWESTLEISKIKL" gene 87627..89175 /locus_tag="SEQ__r04" /db_xref="GeneID:7695523" rRNA 87627..89175 /locus_tag="SEQ__r04" /product="16S ribosomal RNA" /db_xref="GeneID:7695523" gene 89395..89467 /gene="tRNA-Ala" /locus_tag="SEQ__t19" /db_xref="GeneID:7696446" tRNA 89395..89467 /gene="tRNA-Ala" /locus_tag="SEQ__t19" /product="tRNA-Ala" /note="tRNA Ala anticodon TGC, Cove score 84.64" /db_xref="GeneID:7696446" gene 89775..92676 /locus_tag="SEQ__r05" /db_xref="GeneID:7696954" rRNA 89775..92676 /locus_tag="SEQ__r05" /product="23S ribosomal RNA" /db_xref="GeneID:7696954" gene 92759..92874 /locus_tag="SEQ__r06" /db_xref="GeneID:7696447" rRNA 92759..92874 /locus_tag="SEQ__r06" /product="5S ribosomal RNA" /db_xref="GeneID:7696447" gene 92889..92961 /gene="tRNA-Val" /locus_tag="SEQ__t20" /db_xref="GeneID:7696448" tRNA 92889..92961 /gene="tRNA-Val" /locus_tag="SEQ__t20" /product="tRNA-Val" /note="tRNA Val anticodon TAC, Cove score 81.00" /db_xref="GeneID:7696448" gene 92967..93037 /gene="tRNA-Gly" /locus_tag="SEQ__t21" /db_xref="GeneID:7696374" tRNA 92967..93037 /gene="tRNA-Gly" /locus_tag="SEQ__t21" /product="tRNA-Gly" /note="tRNA Gly anticodon TCC, Cove score 71.92" /db_xref="GeneID:7696374" gene 93067..93140 /gene="tRNA-Ile" /locus_tag="SEQ__t22" /db_xref="GeneID:7696979" tRNA 93067..93140 /gene="tRNA-Ile" /locus_tag="SEQ__t22" /product="tRNA-Ile" /note="tRNA Ile anticodon GAT, Cove score 86.72" /db_xref="GeneID:7696979" gene 93153..93224 /gene="tRNA-Glu" /locus_tag="SEQ__t23" /db_xref="GeneID:7696984" tRNA 93153..93224 /gene="tRNA-Glu" /locus_tag="SEQ__t23" /product="tRNA-Glu" /note="tRNA Glu anticodon TTC, Cove score 64.66" /db_xref="GeneID:7696984" gene 93235..93324 /gene="tRNA-Ser" /locus_tag="SEQ__t24" /db_xref="GeneID:7696975" tRNA 93235..93324 /gene="tRNA-Ser" /locus_tag="SEQ__t24" /product="tRNA-Ser" /note="tRNA Ser anticodon TGA, Cove score 61.73" /db_xref="GeneID:7696975" gene 93336..93409 /gene="tRNA-Met" /locus_tag="SEQ__t25" /db_xref="GeneID:7696364" tRNA 93336..93409 /gene="tRNA-Met" /locus_tag="SEQ__t25" /product="tRNA-Met" /note="tRNA Met anticodon CAT, Cove score 75.45" /db_xref="GeneID:7696364" gene 93434..93506 /gene="tRNA-Phe" /locus_tag="SEQ__t26" /db_xref="GeneID:7696357" tRNA 93434..93506 /gene="tRNA-Phe" /locus_tag="SEQ__t26" /product="tRNA-Phe" /note="tRNA Phe anticodon GAA, Cove score 75.06" /db_xref="GeneID:7696357" gene 93526..93606 /gene="tRNA-Tyr" /locus_tag="SEQ__t27" /db_xref="GeneID:7696359" tRNA 93526..93606 /gene="tRNA-Tyr" /locus_tag="SEQ__t27" /product="tRNA-Tyr" /note="tRNA Tyr anticodon GTA, Cove score 63.49" /db_xref="GeneID:7696359" gene 93613..93683 /gene="tRNA-Trp" /locus_tag="SEQ__t28" /db_xref="GeneID:7696371" tRNA 93613..93683 /gene="tRNA-Trp" /locus_tag="SEQ__t28" /product="tRNA-Trp" /note="tRNA Trp anticodon CCA, Cove score 54.14" /db_xref="GeneID:7696371" gene 93695..93767 /gene="tRNA-His" /locus_tag="SEQ__t29" /db_xref="GeneID:7696370" tRNA 93695..93767 /gene="tRNA-His" /locus_tag="SEQ__t29" /product="tRNA-His" /note="tRNA His anticodon GTG, Cove score 65.52" /db_xref="GeneID:7696370" gene 93776..93847 /gene="tRNA-Gln" /locus_tag="SEQ__t30" /db_xref="GeneID:7696982" tRNA 93776..93847 /gene="tRNA-Gln" /locus_tag="SEQ__t30" /product="tRNA-Gln" /note="tRNA Gln anticodon TTG, Cove score 64.56" /db_xref="GeneID:7696982" gene 93866..93949 /gene="tRNA-Leu" /locus_tag="SEQ__t31" /db_xref="GeneID:7696973" tRNA 93866..93949 /gene="tRNA-Leu" /locus_tag="SEQ__t31" /product="tRNA-Leu" /note="tRNA Leu anticodon CAA, Cove score 70.28" /db_xref="GeneID:7696973" gene complement(94293..95423) /locus_tag="SEQ_0089" /db_xref="GeneID:7696987" CDS complement(94293..95423) /locus_tag="SEQ_0089" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745513.1" /db_xref="GI:225869566" /db_xref="GeneID:7696987" /translation="MILRKYNDFCRLFLGRLISNCGDSIYTLVLSWYVLETTNSTWYV GLLNFLIFIPNTFSFIFGKKIDSYPKKNLLVILEWAQLLAVLGIILGMSLREIHASLS LTIIFSCVFLASMVGLNTYTVQDALVPKLIPTKDLAKAEMYMSVAYNGTDYVFTAISG FLLSVISYIPLLFINIVTFLGSILFFRRIAFKEIIEQTNERTDFLSGLRFIWHNKVVL AITLGGAIANFLFASLNVYQLLIAREVGNSAFYGLLVSVSAIGTLVGTTFVANLVLQK LSVGKAFWLATTLLGTGIGLTALVPNRFGLLLLWFLSCLFLGITHVTQKPILRTEIPD EHLGEVFSAFYTVTIPTLALGSLILISLLYFSNKMLRQYDIC" misc_feature complement(join(94329..94397,94455..94508,94527..94580, 94608..94676,94713..94778,94875..94943,95061..95129, 95142..95201,95238..95306,95319..95387)) /locus_tag="SEQ_0089" /inference="protein motif:TMHMM 2.0" /note="10 transmembrane helices predicted for SEQ0089 by TMHMM2.0 at aa 13-35, 40-62, 75-94, 99-121, 161-183, 216-237, 250-272, 282-299, 306-323 and 343-365" misc_feature complement(94482..94514) /locus_tag="SEQ_0089" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature complement(95097..95129) /locus_tag="SEQ_0089" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 95988..97181 /locus_tag="SEQ_0090" /db_xref="GeneID:7695524" CDS 95988..97181 /locus_tag="SEQ_0090" /codon_start=1 /transl_table=11 /product="collagen-like surface-anchored protein SclG" /protein_id="YP_002745514.1" /db_xref="GI:225869567" /db_xref="GeneID:7695524" /translation="MTTKEKQTKLMRRYGIFSVVVALTALAGLGAANEVKATAKKSLN ELPNPVEIIQYNSTRTTDREARKYLNQLYEFLKPYLGSLEEEAQKGGPQGPVGPAGPR GERGEPGPKGDRGPEGQRGEQGPAGPIGPQGPRGDKGETGEIGPRGEQGPTGPTGKPG ERGPKGDRGERGEKGEQGQRGEKGEQGQRGEKGEQGQRGEKGEQGQRGEKGEQGQRGE KGEQGQRGEKGEQGQRGEKGEQGQRGEKGEQGQRGEKGEQGQRGEKGEQGQRGEKGEQ GQRGEKGEQGQRGEKGEQGQRGEKGEQSQRGEKGEQGKDTKPSAPKAPEQSPAPQVPK TSEQQSASPKVPAPKSAPSKSAAPAAQKGILPATGETNHPFFTLAALGVIASAGLLTL KRKNN" sig_peptide 95988..96098 /locus_tag="SEQ_0090" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0090 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.930 between residues 37 and 38" misc_feature join(96024..96083,97110..97163) /locus_tag="SEQ_0090" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0090 by TMHMM2.0 at aa 13-32 and 375-392" misc_feature 96258..96437 /locus_tag="SEQ_0090" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 2.9e-13" misc_feature 96438..96617 /locus_tag="SEQ_0090" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 3.6e-14" misc_feature 96618..96797 /locus_tag="SEQ_0090" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 3.6e-16" misc_feature 97056..97175 /locus_tag="SEQ_0090" /inference="protein motif:PFAM:PF00746" /note="HMMPfam hit to PF00746, Gram positive anchor, score 1.3e-07" misc_feature 97080..97097 /locus_tag="SEQ_0090" /inference="protein motif:Prosite:PS00343" /note="PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide." gene 97675..98199 /locus_tag="SEQ_0091" /db_xref="GeneID:7695525" CDS 97675..98199 /locus_tag="SEQ_0091" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_002745515.1" /db_xref="GI:225869568" /db_xref="GeneID:7695525" /translation="MVEYWDIYTMNRLKTGRLMERGAAFVEGAYHLVVHACVFNDKGE MLIQQRQKDKEGWPSYWDITVGGSALAGETSQEAVMRELKEELGLTLDLAGVRPHFSI TFDNGFDDTFLILQAVDVRKLVLQTEEVQAVRWASRDEILAMIDAGIFIPYFKSKIDM CFELVGQYGAIKWS" misc_feature 97762..98145 /locus_tag="SEQ_0091" /inference="protein motif:PFAM:PF00293" /note="HMMPfam hit to PF00293, NUDIX domain, score 4.3e-22" misc_feature 97873..97932 /locus_tag="SEQ_0091" /inference="protein motif:Prosite:PS00893" /note="PS00893 mutT domain signature." gene 98414..99265 /gene="ipk" /locus_tag="SEQ_0092" /db_xref="GeneID:7695526" CDS 98414..99265 /gene="ipk" /locus_tag="SEQ_0092" /EC_number="2.7.1.148" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2-c-methyl-D-erythritol kinase" /protein_id="YP_002745516.1" /db_xref="GI:225869569" /db_xref="GeneID:7695526" /translation="MTAIIERAPAKINLGLDIQGKRPDGYHDLSMVLVSVDLCDYITV DHLEEDRILLTSNCPRLPINEHNDVYKAAYLLKERFQISTGVSIFLDKRVPVCAGMGG GSSDAAAAIRALNQLWQLKLSPRQMIDIGMQIGSDVPYCLFAGCAQVTGKGEVVKPIN GRLSSWVVLVKPEFGISTRTIFWDIDCETISRVPIEDLVSAIEAGDYQRLLATMGNSL EDISIAKRPFIQKVKDKMLQSGADIALMTGSGPTVFALCQTEKQANRVVNSLKGFCKE VYKVRTL" misc_feature 98672..98848 /gene="ipk" /locus_tag="SEQ_0092" /inference="protein motif:PFAM:PF00288" /note="HMMPfam hit to PF00288, GHMP kinases N terminal domain, score 1.3e-18" misc_feature 99005..99241 /gene="ipk" /locus_tag="SEQ_0092" /inference="protein motif:PFAM:PF08544" /note="HMMPfam hit to PF08544, GHMP kinases C terminal, score 3e-09" gene 99335..99778 /locus_tag="SEQ_0093" /db_xref="GeneID:7695527" CDS 99335..99778 /locus_tag="SEQ_0093" /codon_start=1 /transl_table=11 /product="MarR-family regulatory protein" /protein_id="YP_002745517.1" /db_xref="GI:225869570" /db_xref="GeneID:7695527" /translation="MTILEKKLDNLVNRILLKAENQHELLFGACQSDVKLTNTQEHIL MLLSQEKLTNTDLAKRLNISQAAVTKAIKGLIKQEMLAGTKDTVDARVTYFELTDLAR PIAKEHTHHHDKTLAVYHRLLAHFSAEEQVIVEKFITAFAEELEG" misc_feature 99440..99646 /locus_tag="SEQ_0093" /inference="protein motif:PFAM:PF01047" /note="HMMPfam hit to PF01047, MarR family, score 6.7e-14" misc_feature 99449..99619 /locus_tag="SEQ_0093" /inference="protein motif:PFAM:PF08279" /note="HMMPfam hit to PF08279, HTH domain, score 0.0028" misc_feature 99488..99553 /locus_tag="SEQ_0093" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 2017.000, SD 6.06 at aa 52-73, sequence LTNTDLAKRLNISQAAVTKAIK" gene 99781..100500 /locus_tag="SEQ_0094" /db_xref="GeneID:7695528" CDS 99781..100500 /locus_tag="SEQ_0094" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_002745518.1" /db_xref="GI:225869571" /db_xref="GeneID:7695528" /translation="MRYISVENLSFQYDSEPVLEGISYHLDSGEFVTLTGENGAAKST LIKATLGILKPRAGQVTIAKQNIHGKKLRIAYLPQQVASFNAGFPSTVYEFVKSGRYP RSGWFTRLSKHDEEHVRTSLESVGMWDSRHKRIGSLSGGQKQRVVIARMFASDPDIFV LDEPTTGMDSGTTDTFYELMHHSAHRHGKAVLMITHDPEEVKAYADRNIHLIRNQRLP WRCFNIHDAEADESKGGSFHA" misc_feature 99865..100425 /locus_tag="SEQ_0094" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 2.6e-47" misc_feature 100192..100236 /locus_tag="SEQ_0094" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." gene 100493..101302 /locus_tag="SEQ_0095" /db_xref="GeneID:7695529" CDS 100493..101302 /locus_tag="SEQ_0095" /codon_start=1 /transl_table=11 /product="ABC transporter permease protein" /protein_id="YP_002745519.1" /db_xref="GI:225869572" /db_xref="GeneID:7695529" /translation="MLEILSYDFMQRAVMAVVAISIFAPILGIFLILRRQSLLSDTLS HVSLAGVAFGVVLGVSPTFTTIIVVVLAAILLEYLRVVYKHYMEISTAILMSLGLAIS LIIMSKSTSSSSMSLEQYLFGSIITISTEQVAALFVIALIILALTILFIRPMYILTFD EDTAYVDGLPVRVMSVLFNIVTGVAIALTIPAAGALLVSTIMVLPASIAMRLGKNFKS VIFLGIMIGFTGMLSGIFLSYFWETPASATITMIFIAIFLVVNLLSFIRQK" misc_feature 100508..101284 /locus_tag="SEQ_0095" /inference="protein motif:PFAM:PF00950" /note="HMMPfam hit to PF00950, ABC 3 transport family, score 1.7e-90" misc_feature join(100520..100588,100649..100717,100745..100813, 100892..100960,101018..101086,101147..101215, 101225..101293) /locus_tag="SEQ_0095" /inference="protein motif:TMHMM 2.0" /note="7 transmembrane helices predicted for SEQ0095 by TMHMM2.0 at aa 10-32, 53-75, 85-107, 134-156, 176-198, 219-241 and 245-267" misc_feature 100529..101263 /locus_tag="SEQ_0095" /inference="protein motif:PFAM:PF01032" /note="HMMPfam hit to PF01032, FecCD transport family, score 0.004" gene complement(101337..102593) /locus_tag="SEQ_0096" /db_xref="GeneID:7695530" CDS complement(101337..102593) /locus_tag="SEQ_0096" /EC_number="6.1.1.1" /codon_start=1 /transl_table=11 /product="tyrosyl-tRNA synthetase" /protein_id="YP_002745520.1" /db_xref="GI:225869573" /db_xref="GeneID:7695530" /translation="MNIFEELKARGLVFQTTDEEALVKALTEGQVSYYTGYDPTADSL HLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERILQTKETVLDWSQKIK EQLSCFLDFDNGENKAELVNNYDWFSQISFIDFLRDVGKHFTINYMMSKDSVKKRIET GISYTEFAYQVMQGYDFYELNAKHNVTLQIGGSDQWGNMTAGTELLRKKADKTGHVMT VPLITDATGKKFGKSEGNAIWLDAKKTSPYEMYQFWLNVMDDDAVRFLKIFTFLSLDE IAAIEEQFNAARHERLAQKTLAREVVTLVHGEAAYQQALNITEQLFAGAIKNLSAAEL KQGLSNVPNYQVQAEDSLNIVDMLVTAGISPSKRQAREDLQNGAIYLNGERLQDLDYS LSTADRIDNQLTVIRRGKKKYAVLTY" misc_feature complement(101397..101540) /locus_tag="SEQ_0096" /inference="protein motif:PFAM:PF01479" /note="HMMPfam hit to PF01479, S4 domain, score 1.2e-06" misc_feature complement(101625..102518) /locus_tag="SEQ_0096" /inference="protein motif:PFAM:PF00579" /note="HMMPfam hit to PF00579, tRNA synthetases class I (W and Y), score 2.6e-116" misc_feature complement(102447..102479) /locus_tag="SEQ_0096" /inference="protein motif:Prosite:PS00178" /note="PS00178 Aminoacyl-transfer RNA synthetases class-I signature." gene 102686..104998 /locus_tag="SEQ_0097" /db_xref="GeneID:7695531" CDS 102686..104998 /locus_tag="SEQ_0097" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 1B" /protein_id="YP_002745521.1" /db_xref="GI:225869574" /db_xref="GeneID:7695531" /translation="MRYVMVKWKKNQTSKNHQRLELVDFGTVFLRTLKFMSSFFYVAV FLFGMLGAGMAFGYLASQIDSVKIPSKESLVKQVESLTMMSQITYSDNSLISGIDTDL LRTPVANDAISDNIKKAIVSTEDDNFQRHNGIVPKAIFRATLASVLGFGESSGGSTLT QQLIKQQVLGDDPTFRRKSKEIIYALALERYMSKDDILSHYLNVSPFGRNNKGQNIAG VEEAARGIFGVSAKDLTVPQAAFLAGLPQSPIVYSPYLPTGQLKSADDMAYGIKRQQN VLYNMYRTGVLTEKEYRDYKAYPISNDFIKPETVTANTHDYLYYSVLAEAQKAMYSYL IKRDKVPAKDLKNDETKAAYEERALTELQHGGYTVKTTINKPIHQVMQKAAAQFGGLL DDGTGTVQMGNVLTDNATGAVLGFIGGRDYAQNQNNHAFNTVRSPGSSIKPIIAYGPA IDQGLMGSASVLSNYPTTYSSGQKIMHVDSEGTAMMPLQEALNTSWNIPAFWTQKLLR DKGVDVENYMSKMGYRIADYSIESLPLGGGIETSVAQQTNAYQMIANNGLYQKQYMVA SITASDGSVVYQHEAKPVRIFSAPTATILQELLRGPISSGATTTFKSRLAGINPSLAG ADWIGKTGTTENYTDVWLVLATPRVTLGGWAGHDDNTSLAPLTGYNNNSNYMAYLVNA ISQADPNLFGLGQRFSLDPGVIKASVLKATGLKPGTVTINGQTISIGGELTTSLWAQK GPGATTYRFAIGGTDADYQKAWGGFSGRRN" misc_feature 102797..102865 /locus_tag="SEQ_0097" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0097 by TMHMM2.0 at aa 38-60" misc_feature 102938..103456 /locus_tag="SEQ_0097" /inference="protein motif:PFAM:PF00912" /note="HMMPfam hit to PF00912, Transglycosylase, score 1.6e-76" misc_feature 103370..103456 /locus_tag="SEQ_0097" /inference="protein motif:Prosite:PS00402" /note="PS00402 Binding-protein-dependent transport systems inner membrane comp. sign." misc_feature 103886..104740 /locus_tag="SEQ_0097" /inference="protein motif:PFAM:PF00905" /note="HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 7.9e-15" misc_feature 104555..104578 /locus_tag="SEQ_0097" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 105260..108826 /gene="rpoB" /locus_tag="SEQ_0098" /db_xref="GeneID:7695532" CDS 105260..108826 /gene="rpoB" /locus_tag="SEQ_0098" /EC_number="2.7.7.6" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase beta chain" /protein_id="YP_002745522.1" /db_xref="GI:225869575" /db_xref="GeneID:7695532" /translation="MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFLDSG LKEVFEDVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLINKE TGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGS TVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVR NTIEKDIHKNQSDSRTDEALKEIYERLRPGEPKTADSSRSLLTARFFDARRYDLAAVG RYKINKKLNIKTRLLNQIIAENLIDSETGEILVEAGTEMTRSVIESIEEQLDGDLNKF VYTPNDYAVVTEPVILQKFKVVSPVDPDRVVTIVGNANPDDKVRALTPADILAEMSYF LNLAEGLGKVDDIDHLGNRRIRAVGELLANQFRIGLARMERNVRERMSVQDNDVLTPQ QIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLTRDRAGYEVR DVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRVIGRVTNEIV WLTADEEDEFTVAQANSKLNPDGTFAEEIVMGRHQGNNQEFPASQVDFVDVSPKQVVA VATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAVIAQH NGKVVFSDAERVEVRREDGSLDVYHITKFRRSNSGTAYNQRTLVKIGDIVEKGDFIAD GPSMEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDT KLGPEEITREVPNVGEEALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERL LHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRANGDELQSGVNMLVRVYIAQKRK IKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHL GMAARNLGIHIATPVFDGATSEDLWETVREAGMDSDAKTVLYDGRTGEPFDNRVSVGV MYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVL QEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDN EVELRDLDEGEDDDVMHVDDLEKAREKQAQETQDIAESTEDN" misc_feature 105341..106666 /gene="rpoB" /locus_tag="SEQ_0098" /inference="protein motif:PFAM:PF04563" /note="HMMPfam hit to PF04563, RNA polymerase beta subunit, score 3e-55" misc_feature 105677..106243 /gene="rpoB" /locus_tag="SEQ_0098" /inference="protein motif:PFAM:PF04561" /note="HMMPfam hit to PF04561, RNA polymerase Rpb2, domain, score 1.9e-08" misc_feature 106676..106885 /gene="rpoB" /locus_tag="SEQ_0098" /inference="protein motif:PFAM:PF04565" /note="HMMPfam hit to PF04565, RNA polymerase Rpb2, domain, score 1.6e-39" misc_feature 107288..108454 /gene="rpoB" /locus_tag="SEQ_0098" /inference="protein motif:PFAM:PF00562" /note="HMMPfam hit to PF00562, RNA polymerase Rpb2, domain, score 1.4e-211" misc_feature 108011..108049 /gene="rpoB" /locus_tag="SEQ_0098" /inference="protein motif:Prosite:PS01166" /note="PS01166 RNA polymerases beta chain signature." misc_feature 108458..108688 /gene="rpoB" /locus_tag="SEQ_0098" /inference="protein motif:PFAM:PF04560" /note="HMMPfam hit to PF04560, RNA polymerase Rpb2, domain, score 1.1e-49" gene 108917..112552 /locus_tag="SEQ_0099" /db_xref="GeneID:7695533" CDS 108917..112552 /locus_tag="SEQ_0099" /EC_number="2.7.7.6" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase beta' chain" /protein_id="YP_002745523.1" /db_xref="GI:225869576" /db_xref="GeneID:7695533" /translation="MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPERE GLFDEVIFGPTKDWECACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVS HIWYFKGIPSRMGLTLDMSPRALEEVIYFAAYVVIDPKDTPLEPKSLLTEREYREKIQ EYGHGSFIAKMGAEAIQDLLKRVDLVTEIAELKEELKTATGQKRIKAVRRLDVLDAFH KSGNKPEWMILNILPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELN APGIIVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLG KRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKPFVIREIVAREFAGNVKAAKRMVE RGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLVCEAYNAD FDGDQMAIHVPLSEEAQAEARLLMLAAEHILNPKDGKPVVTPSQDMVLGNYYLTMEDA GREGEGMVFKDKDEAVMAYRNGYVHLHSRVGIAVDSMPSKLWKDSQRHKIMVTTVGKI LFNDIMPEDLPYLQEPNNANLTEGTPDKYFLKPGQNIQEVIDSLPINVPFKKKNLGNI IAETFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVGIADIPVIDNKAEIIEAAHHRVE EINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIETQDPKNPIVMMMDSGARGNIS NFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMTDTALKTADS GYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETLEERLQGRYTRKSVKHP ETGEVLIGADQLITEDMARKIVDAGVEEVTIRSVFTCATRHGVCRHCYGINLATGDAV EVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQEIFEARNPKGEAV ITEVKGTVIEIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVEVGDEVNRGAALTEG SIQPKHLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGD TDLLPGTLMDIADFTDANKEIVISGGIPATSRPVLMGITKASLETNSFLSAASFQETT RVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMVRYRNIEPQAINEVEVIEEAEATE EPAIIKE" misc_feature 108926..109912 /locus_tag="SEQ_0099" /inference="protein motif:PFAM:PF04997" /note="HMMPfam hit to PF04997, RNA polymerase Rpb1, domain, score 2.2e-142" misc_feature 109916..110344 /locus_tag="SEQ_0099" /inference="protein motif:PFAM:PF00623" /note="HMMPfam hit to PF00623, RNA polymerase Rpb1, domain, score 1.3e-83" misc_feature 110351..110908 /locus_tag="SEQ_0099" /inference="protein motif:PFAM:PF04983" /note="HMMPfam hit to PF04983, RNA polymerase Rpb1, domain, score 6.3e-71" misc_feature 110993..111223 /locus_tag="SEQ_0099" /inference="protein motif:PFAM:PF05000" /note="HMMPfam hit to PF05000, RNA polymerase Rpb1, domain, score 4.2e-23" misc_feature 111227..112333 /locus_tag="SEQ_0099" /inference="protein motif:PFAM:PF04998" /note="HMMPfam hit to PF04998, RNA polymerase Rpb1, domain, score 1.7e-78" gene complement(112624..112878) /locus_tag="SEQ_0100" /pseudo /db_xref="GeneID:7695534" misc_feature complement(112624..112878) /locus_tag="SEQ_0100" /note="gene remnant. Similar to C-terminal region Streptococcus pneumoniae IS1167 transposase UniProt:Q97SC5 (EMBL:AE005672 (422 aa) fasta scores: E()=5e-12, 65.714% id in 70 aa" /pseudo /db_xref="PSEUDO:CAW92044.1" gene 113123..113677 /locus_tag="SEQ_0101" /db_xref="GeneID:7695535" CDS 113123..113677 /locus_tag="SEQ_0101" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745524.1" /db_xref="GI:225869577" /db_xref="GeneID:7695535" /translation="MRLKKLIYSSIAALAILTYGTISANADASIPEIDQTEVITILKS DGYLNIDEGTQEVTITEKYKQAVLSSIDLDRQEAIFTENSVTIRDIFSPRSFTGVNKI VFTWKGYDLYLDSTNANRLSALGWGSTALSGLIPDPIVSKVLAAALGVVSASISYANA AGRGVIVAFVGTFPRGVIHWVASQ" sig_peptide 113123..113200 /locus_tag="SEQ_0101" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0101 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.814 between residues 26 and 27" gene 114238..115287 /locus_tag="SEQ_0103" /db_xref="GeneID:7695536" CDS 114238..115287 /locus_tag="SEQ_0103" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745525.1" /db_xref="GI:225869578" /db_xref="GeneID:7695536" /translation="MMTKESQKVTDSLNTSVVSLLQYCFAIMVIVIHSGRLFQYEPLH FFLKSFLGRMAVPYFLICTAFFLRGRLREANREKQYFKQILKTYLLWSLIYLPYAYAF FESLRLPKHYLPLGLCLALSYFGMCYHLWYIPALWLGWVLVQLSLKTFGKKVTLIIVA GLYLLGSMETYSHFLSSTPFEPLLTGYMHIFQTSRNGIFYTPAYLCAGCLLYDHFSSS LFSQRYMRKAAVCLILLALESLLIYHHQGLDKNFFLLSALFTTFLFNASVRISLLSKY SLAKLKKLSYYYFFLHPMFIECSLFLLRPYQLAPATKGKLVFLMTLLATHLCSEALML LVRSQAHAKAYLKRQ" misc_feature join(114274..114342,114385..114438,114496..114549, 114592..114660,114697..114765,114823..114882, 114919..114978,114991..115050,115087..115155, 115183..115251) /locus_tag="SEQ_0103" /inference="protein motif:TMHMM 2.0" /note="10 transmembrane helices predicted for SEQ0103 by TMHMM2.0 at aa 13-35, 50-67, 87-104, 119-141, 154-176, 196-215, 228-247, 252-271, 284-306 and 316-338" gene 115348..115713 /locus_tag="SEQ_0104" /db_xref="GeneID:7695537" CDS 115348..115713 /locus_tag="SEQ_0104" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745526.1" /db_xref="GI:225869579" /db_xref="GeneID:7695537" /translation="MYQVIEMYGDWEPWWFIDGWQDDIVQEKSFDSWPAALAYFEEEW QRMKKSYPSYHSQKSLLATFWREDERRWCEDCDEELQQYHSLLLLKDRDIVPKHHYQS YFEQRNDCPQASLSCKLSI" misc_feature 115348..115710 /locus_tag="SEQ_0104" /inference="protein motif:PFAM:PF06279" /note="HMMPfam hit to PF06279, Protein of unknown function (DUF1033), score 6.2e-68" gene 116250..118253 /locus_tag="SEQ_0105" /db_xref="GeneID:7695538" CDS 116250..118253 /locus_tag="SEQ_0105" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745527.1" /db_xref="GI:225869580" /db_xref="GeneID:7695538" /translation="MKRLFIILSNILVSLFLVWVFTIWSDTFVSHYYPSVVVLDASPK ASYNQVEAGLTRLADETDSLIAMQHQEPGPEGTPIVTYTLFGKGKLPGGLAEKVIEEP SRLSVENNYFILKGGLTVERLRDTLAGLGMTKMTALKPSFLGTLVLIFSSGSQALGIV IFCLTFGALTLIGHIRTLRAVGIRLISGERRWQIFLYPIRSDVCYCCLGLLLGLSLAA IMSQLMSFSPLVLYLIGIGLVCYNLLLIAIALFFAGLFVIGIKRVHLMQVIKGQIPVR GIISLILIAQLLAVLVVSFGASRTLLYVQAERQQKQGQAAWLQEDRLVTLLIGRDGLD IGNTKEAIAKQKTWFHVMDQAVSEHGAILSRHYLVERDLQSGLSMLTASSSWNDYSPQ GNVLLVTPQYVKHQKVEVAPDISEKINQLSLGEFVLLLPEHLKTQAAQYQSVFESAVT GLASGEGHQPMTATVSYTKTGQERFLYNTTPISYQQFLRDPIIVVLTPKSTGEQAYAF WEVALQNYFLFDQLADTQTLIKQNGIENWVGELKTGYRIYETLLNNLRREIWLMIAGA ILGIATSMLMFNTMNLLYFEEFRRDIFIKRVSGLRFFELHRRYLLSQLLVFFVGLVIS ALLTQNPLMCLLVFFLFLGNAILLLYRQMRIENKMSLLILKGA" sig_peptide 116250..116372 /locus_tag="SEQ_0105" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0105 by SignalP 2.0 HMM (Signal peptide probability 0.921) with cleavage site probability 0.215 between residues 41 and 42" misc_feature join(116262..116321,116706..116774,116856..116924, 116934..117029,117066..117134,117936..118004, 118062..118130,118140..118199) /locus_tag="SEQ_0105" /inference="protein motif:TMHMM 2.0" /note="8 transmembrane helices predicted for SEQ0105 by TMHMM2.0 at aa 5-24, 153-175, 203-225, 229-260, 273-295, 563-585, 605-627 and 631-650" misc_feature 117948..118247 /locus_tag="SEQ_0105" /inference="protein motif:PFAM:PF07242" /note="HMMPfam hit to PF07242, Protein of unknown function (DUF1430), score 4.1e-37" gene 118255..118902 /locus_tag="SEQ_0106" /db_xref="GeneID:7695539" CDS 118255..118902 /locus_tag="SEQ_0106" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_002745528.1" /db_xref="GI:225869581" /db_xref="GeneID:7695539" /translation="MIRLEKVSKCFGDRVLFSDLSMTFESGKVYALIGSSGSGKTTLM NMLAALEDYQGEIFFRGKNLKTYRSSDFFRHELGYLFQHFGLLESQTIADNLKLGLIG QKISKEEGRQRELEALRAVGLDYLSLEKPVFELSGGEYQRVALAKVMLKDPPFILADE PTASIDPEASKAIMAILLSLRHKNRTIIIATHSPSIWEMADEVISVDQLSSLTRL" misc_feature 118333..118881 /locus_tag="SEQ_0106" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 8.7e-53" misc_feature 118354..118377 /locus_tag="SEQ_0106" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 118699..118719 /locus_tag="SEQ_0106" /inference="protein motif:Prosite:PS00092" /note="PS00092 N-6 Adenine-specific DNA methylases signature." gene 119084..120022 /locus_tag="SEQ_0107" /db_xref="GeneID:7695540" CDS 119084..120022 /locus_tag="SEQ_0107" /codon_start=1 /transl_table=11 /product="competence protein" /protein_id="YP_002745529.1" /db_xref="GI:225869582" /db_xref="GeneID:7695540" /translation="MIQELAKRLIRQAEELQAQDIYILPRGTGYELLMRVGDDRRLID VCESDRMANLISHFKFVAGMNVGEKRRCQLGACDYDLDDTKVSLRLSAVGDYQGQESL VIRLLYHHQRQLRYWFDGLERVTSAIGARGLYLFSGPVGSGKTTLMYQLVSDYCKELQ VISIEDPVEIKNDQLLQLQVNDSIGMTYDNLIKLSLRHRPDVLIIGEIRDTQTARAVI RASLTGAMVFSTVHAKSISGVYARLLELGISRAELDNSLAMVAYQRFISGGALIDCAQ KEFEHHQANRWNQQIDQLLAEGHLNTRQARLEKIIQ" misc_feature 119084..119890 /locus_tag="SEQ_0107" /inference="protein motif:PFAM:PF00437" /note="HMMPfam hit to PF00437, Type II/IV secretion system protein, score 4e-30" misc_feature 119495..119518 /locus_tag="SEQ_0107" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 119669..119713 /locus_tag="SEQ_0107" /inference="protein motif:Prosite:PS00662" /note="PS00662 Bacterial type II secretion system protein E signature." gene 119955..120989 /locus_tag="SEQ_0108" /db_xref="GeneID:7695541" CDS 119955..120989 /locus_tag="SEQ_0108" /codon_start=1 /transl_table=11 /product="competence protein" /protein_id="YP_002745530.1" /db_xref="GI:225869583" /db_xref="GeneID:7695541" /translation="MISFLRRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTE VIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAALGYSDAVMTQINLADKHGNIKLT LEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNTLTDLLL HLPHYFLGFCLLVLLLIGSFYLYAKSCSRLKLFSQLSYYPIIGSLLRQYLTAYYAREW GNLIGQGLELITILEMMSNEKSQLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSL MIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLVVAVVIVMIYAAILL PIYQQMGDVF" misc_feature 120036..120395 /locus_tag="SEQ_0108" /inference="protein motif:PFAM:PF00482" /note="HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 5.1e-16" misc_feature join(120324..120392,120435..120503,120897..120965) /locus_tag="SEQ_0108" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0108 by TMHMM2.0 at aa 124-146, 161-183 and 315-337" misc_feature 120594..120959 /locus_tag="SEQ_0108" /inference="protein motif:PFAM:PF00482" /note="HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 9.4e-20" gene 120990..121313 /locus_tag="SEQ_0109" /db_xref="GeneID:7695542" CDS 120990..121313 /locus_tag="SEQ_0109" /codon_start=1 /transl_table=11 /product="competence protein" /protein_id="YP_002745531.1" /db_xref="GI:225869584" /db_xref="GeneID:7695542" /translation="MKMRLSILKDQGVQAFTLLEMLLVLLIISVLMLLFVPNLSKQKD KVTDTGNAAVVKLVENQAELYELSHGEKPSLKQLQEDGSISDKQQKAYQDYYAKHKDE AKKLN" sig_peptide 120990..121115 /locus_tag="SEQ_0109" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0109 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.534 between residues 42 and 43" misc_feature 121029..121100 /locus_tag="SEQ_0109" /inference="protein motif:PFAM:PF07963" /note="HMMPfam hit to PF07963, Prokaryotic N-terminal methylation motif, score 6.8e-06" misc_feature 121032..121100 /locus_tag="SEQ_0109" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0109 by TMHMM2.0 at aa 15-37" gene 121291..121716 /locus_tag="SEQ_0110" /db_xref="GeneID:7695543" CDS 121291..121716 /locus_tag="SEQ_0110" /codon_start=1 /transl_table=11 /product="competence protein" /protein_id="YP_002745532.1" /db_xref="GI:225869585" /db_xref="GeneID:7695543" /translation="MKLRSSIKAFTLLEGLLTLFLISFMLLYLSLPVSDSYARVEEHL FFMRFEQAYRHLQKLSILRQKEHVLVLKPHYIKAEEAILPLPKQVKLKSTQTLTIDKL GGNHSLARVVFENRDRQITYQFYLGSGNYQKTSQSLHRS" sig_peptide 121291..121404 /locus_tag="SEQ_0110" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0110 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.974 between residues 38 and 39" misc_feature 121309..121377 /locus_tag="SEQ_0110" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0110 by TMHMM2.0 at aa 7-29" gene 121673..121963 /locus_tag="SEQ_0111" /db_xref="GeneID:7695544" CDS 121673..121963 /locus_tag="SEQ_0111" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745533.1" /db_xref="GI:225869586" /db_xref="GeneID:7695544" /translation="MVIIKKQVKAYIALEGLIATGLILVIVTLILSALRYSQQELSAC RQKQELLNTAVMAMQTKQRALSLNGCHIKLLSHQKGIAIVEKDQTIIRIERQ" misc_feature 121706..121774 /locus_tag="SEQ_0111" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0111 by TMHMM2.0 at aa 12-34" gene 121950..122384 /locus_tag="SEQ_0112" /db_xref="GeneID:7695545" CDS 121950..122384 /locus_tag="SEQ_0112" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745534.1" /db_xref="GI:225869587" /db_xref="GeneID:7695545" /translation="MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMANERYLAA NDQNNWLLFSQQLRAELSGTTLQGVRNNRLYVEKDKKALSFGQVKGHDFRKAASNGQG YQPMLFGLSSSQITAVGQQVTIKLKWQSGLERTFIYAFQEKG" sig_peptide 121950..122060 /locus_tag="SEQ_0112" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0112 by SignalP 2.0 HMM (Signal peptide probability 0.786) with cleavage site probability 0.473 between residues 37 and 38" misc_feature 121974..122042 /locus_tag="SEQ_0112" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0112 by TMHMM2.0 at aa 9-31" misc_feature 122268..122315 /locus_tag="SEQ_0112" /inference="protein motif:Prosite:PS00012" /note="PS00012 Phosphopantetheine attachment site." gene 122362..122724 /locus_tag="SEQ_0113" /db_xref="GeneID:7695546" CDS 122362..122724 /locus_tag="SEQ_0113" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745535.1" /db_xref="GI:225869588" /db_xref="GeneID:7695546" /translation="MHFKRRVKAGVLLYALLMASVFLLLLQAYLSHISQLHQEYQAQM DYAKAQLIAEMVYQEQPSGDGQIAFNCGQVSYKSHKQRFIIEIKLPHQQLYQFSYPEV QQASQTSKKQSELKQSLP" sig_peptide 122362..122451 /locus_tag="SEQ_0113" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0113 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.386 between residues 30 and 31" misc_feature 122386..122454 /locus_tag="SEQ_0113" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0113 by TMHMM2.0 at aa 9-31" repeat_region 122736..124164 /note="ISSeq3" repeat_region 122744..122755 /note="perfect inverted repeat flanking IS element" gene 122790..123305 /locus_tag="SEQ_0114" /db_xref="GeneID:7695547" CDS 122790..123305 /locus_tag="SEQ_0114" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745536.1" /db_xref="GI:225869589" /db_xref="GeneID:7695547" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature 122844..122909 /locus_tag="SEQ_0114" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" misc_feature 122952..123233 /locus_tag="SEQ_0114" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature 123111..123149 /locus_tag="SEQ_0114" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" gene 123329..124132 /locus_tag="SEQ_0115" /pseudo /db_xref="GeneID:7695548" misc_feature 123329..124132 /locus_tag="SEQ_0115" /pseudo /db_xref="PSEUDO:CAW92069.1" repeat_region complement(124145..124156) /note="perfect inverted repeat flanking IS element" gene 124217..125170 /locus_tag="SEQ_0117" /db_xref="GeneID:7695549" CDS 124217..125170 /locus_tag="SEQ_0117" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745537.1" /db_xref="GI:225869590" /db_xref="GeneID:7695549" /translation="MNFEKIEQAYELILENSQLIENDLKTHIYDAIVEQNSFYLGAQG ASPQVAKNIETLKALQLTKEEWRQAYQFVLIKAGKTEPLQANHQFTPDAIGFIMLYIL ETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEIMGSS AQFIQEDAIRPQLLKESDLIISDLPVGFYPNDDIASRYQVASSDEHTYAHHLLMEQAL KYLKKDGFAIFLAPVNLLSSPQSHLLKQWLKGYAQVVALITLPEAVFGNPANAKSIIV LCKQSNRFAETFVYPIRDLKSVDNVRDFMENFKNWKRDNVI" gene 125230..126429 /locus_tag="SEQ_0118" /db_xref="GeneID:7695550" CDS 125230..126429 /locus_tag="SEQ_0118" /EC_number="2.7.2.1" /codon_start=1 /transl_table=11 /product="acetate kinase" /protein_id="YP_002745538.1" /db_xref="GI:225869591" /db_xref="GeneID:7695550" /translation="MSKTIAINAGSSSLKWQLYQMPEEKVLAQGIIERIGLTDSISTV KYDGKKEEHILDIPDHTEAVKRLLNDLIHFGIIGTYDEITGVGHRIVAGGEYFKESVV VDDKVVEQVEELAALAPLHNPGAAAGIRAFRKILPDITSVCVFDTSFHTTMQKHTYLY PIPQKYYTDYKVRKYGAHGTSHKYVAEEAAKMLGRPLDELKLITAHVGNGVSITANYH GQSVDTSMGFTPLAGPMMGTRSGDIDPAIIPYLIAQDPELKDAADVVNMLNKQSGLGG VSGISSDMRDIEAGLQANNPDAVLAYNIFIDRIKKFIGQYFAVLNGADALVFTAGMGE NAPLMRQDVVNGLSWFGMEIDPEKNVFGYRGDISTAASKVKVLVISTDEELCIARDVE RLKQTIS" misc_feature 125236..126396 /locus_tag="SEQ_0118" /inference="protein motif:PFAM:PF00871" /note="HMMPfam hit to PF00871, Acetokinase family, score 4.1e-196" misc_feature 125833..125886 /locus_tag="SEQ_0118" /inference="protein motif:Prosite:PS01076" /note="PS01076 Acetate and butyrate kinases family signature 2." repeat_region 126643..128079 /note="ISSeq5" repeat_region 126650..126662 /note="imperfect inverted repeat flanking IS element" gene 126696..127184 /locus_tag="SEQ_0119" /db_xref="GeneID:7695551" CDS 126696..127184 /locus_tag="SEQ_0119" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745539.1" /db_xref="GI:225869592" /db_xref="GeneID:7695551" /translation="MKLSYDDKLRIYELRKNGMSCSRIGQQYDIQVSNLKYMVKLMDR YGVEIVRKGKNKYYPPELKQEIIDKVLLEGQSQLSVSLEYALPNAGMLPNWIAQYKKN GYTILEKQRGRPTKMGRKPKKTWEEMTELERLQEELEYLRTENAYLKKLRELRLQDEA RE" misc_feature 126858..127139 /locus_tag="SEQ_0119" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00051" gene 127208..128047 /locus_tag="SEQ_0120" /db_xref="GeneID:7695552" CDS 127208..128047 /locus_tag="SEQ_0120" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745540.1" /db_xref="GI:225869593" /db_xref="GeneID:7695552" /translation="MVQEGFRLNLLLEIAKMARSTYYYQVKQLDKSDKDEAINSEIKA IYEEHKGNYGYRRIHLELKNRGFIVNHKKVQRLMKEMRLAARIRRKRRYSSYKGETGK KADNLIQRQFEAAKPYEKCYTDVTEFALPNNDEKLYLAPVLDGYNSEIIDFTLSRSPD LKQVQTMLEKAFPADSYNGTILHSDQGWQYQHQSYHHFLESKGIRPSMSRKGNSPDNG MMESFFGILKSEMFYGLETTYQSLNELEQAITDYIFYYNNKRIKAKLKGLSPVQYRTK SFH" misc_feature 127544..128032 /locus_tag="SEQ_0120" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 7.5e-38" repeat_region complement(128060..128071) /note="imperfect inverted repeat flanking IS element" gene complement(128235..128825) /locus_tag="SEQ_0121" /db_xref="GeneID:7695553" CDS complement(128235..128825) /locus_tag="SEQ_0121" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745541.1" /db_xref="GI:225869594" /db_xref="GeneID:7695553" /translation="MKKVKQLIIAMIASLLLIANTVPSIVYASEVTKIQQEEKVIEEK LSQPLEISKSELDTLIQEKKALYPNLTEQEMREIAYKAMSPYTFRASVWDGQGVTLDE FAWAFDVIVGGLISGYATIGKYVAKHGVAAARAVLSRAAKAAAQRLGVLTGFISGLLR AAFSVINIYYNVGYALAQYVDARDYHPNNGRINAWA" sig_peptide complement(128235..128318) /locus_tag="SEQ_0121" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0121 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 between residues 28 and 29" misc_feature complement(join(128319..128387,128448..128516, 128739..128807)) /locus_tag="SEQ_0121" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0121 by TMHMM2.0 at aa 7-29, 104-126 and 147-169" gene 129348..131390 /locus_tag="SEQ_0122" /db_xref="GeneID:7695554" CDS 129348..131390 /locus_tag="SEQ_0122" /codon_start=1 /transl_table=11 /product="PTS multi-domain regulator" /protein_id="YP_002745542.1" /db_xref="GI:225869595" /db_xref="GeneID:7695554" /translation="MVDSKAVVILMTLMTYQDLSLYELSVKTKFTIREIKDRIDELNE FLAQHELSELDATRSGYRISQQLKAESDHLFTLINAEQVYLSQAERINLIYLYTFCRR DFVSNSHYQDFLKVSKNTALTDIKALRQKLADVDLELKYTRASGYILVGDEINKHRLA LVMIATLLKSPIGLWALDYILASWHYQVSFEALEKRVSHFYQTFQMSPILDRLQVCLY AVIFILCRYQRRVDRVKQRQVVVSEQLDQLTALLVAEIMQQLSLKYQLFEADEAYFQL LLAGCFEGEGTVGDDFFESLTVAIVDQMQGVALLSFSQADQLKENLKRHLIPAYYRLR YGLPSDNDYTLRIKDSYSELFDLVKQSLEPLAKELGSPIPDSEIAYFVLHFGGYLKQQ GRDFHRQAYQAVIVCPNGVSSSLMIKEHLKLLFPDIAFRGLSRLDQLGQLDKSGYDLV FSTIRLETDKPFYLVPMIMTDEQAFQLVSLVNRDFPDIGYRLEVEELLHLISSYAVIH QKEKLRFALQQYLRQGVKRKDIRPVLQDLITKKTYQSTSEQLGWREAIYLAAQPLLES GQIQASYPEAMIAKVEEFGTFINLGKGIAIPHARPEDGVNQVGMSMLVLEHPIYLLDD PKQEIRLLICIAAIDNETHLKALSRLTTILRDNEQVKALLASKSFEDIKTIIAEEA" misc_feature 130239..130511 /locus_tag="SEQ_0122" /inference="protein motif:PFAM:PF00874" /note="HMMPfam hit to PF00874, PRD domain, score 1.2e-14" misc_feature 130953..131384 /locus_tag="SEQ_0122" /inference="protein motif:PFAM:PF00359" /note="HMMPfam hit to PF00359, Phosphoenolpyruvate-dependent sugar phosph, score 9.8e-27" misc_feature 131094..131144 /locus_tag="SEQ_0122" /inference="protein motif:Prosite:PS00372" /note="PS00372 PTS EIIA domains phosphorylation site signature 2." gene 131392..131679 /locus_tag="SEQ_0123" /db_xref="GeneID:7695555" CDS 131392..131679 /locus_tag="SEQ_0123" /codon_start=1 /transl_table=11 /product="sugar phosphotransferase system (PTS), lactose/cellobiose-specific family, IIB component" /protein_id="YP_002745543.1" /db_xref="GI:225869596" /db_xref="GeneID:7695555" /translation="MALRIGTACGSGLGSSFMVQMNIESVLKDLGVTGVEVEHYDLGG ADPTAADVWIVGRDLADSAEHLGDVRILNSIIDMDELTSLVKAICQEKGLV" misc_feature 131401..131661 /locus_tag="SEQ_0123" /inference="protein motif:PFAM:PF02302" /note="HMMPfam hit to PF02302, PTS system, Lactose/Cellobiose specific IIB, score 1.4e-26" gene 131692..133035 /gene="ulaA" /locus_tag="SEQ_0124" /db_xref="GeneID:7695556" CDS 131692..133035 /gene="ulaA" /locus_tag="SEQ_0124" /codon_start=1 /transl_table=11 /product="sugar-specific permease, SgaT/UlaA family" /protein_id="YP_002745544.1" /db_xref="GI:225869597" /db_xref="GeneID:7695556" /translation="MTFLLDIVSTPAILVALIAIVGLLLQKKPAPDIVKGGIKTFVGF LVVSGGAGIVQGSLNPFGTMFEHAFHLSGVVPNNEAIVAVALTTYGSATALIMFTGMI FNILIARFTRFKYIFLTGHHTLYMACMIAVIMSVAGLTSVSLIVFGGLALGIIMSVSP ALVQRYMIQLTGNDKVALGHFSSLGYWLSGFVGGLVGDKTKSTEDIDFPKSLAFLRDS TVSITLSMAIIYLIVAIFAGPTWISKELSSGTHGLVFALQLAGQFAAGVFVILAGVRL ILGEIVPAFKGISEKLVPHSKPALDCPIAYPYAPNAVLIGFVSSFVGGLVSMAVMIVS GTTVILPGVVPHFFCGATAGVIGNASGGVRGATVGAFLQGVLISYLPIFLMPVLGGLG FEGSTFSDADFGLSGILLGTLNSIGGVTAIVIGIFVILAGLVGLSVVGKSVAKEE" sig_peptide 131692..131772 /gene="ulaA" /locus_tag="SEQ_0124" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0124 by SignalP 2.0 HMM (Signal peptide probability 0.651) with cleavage site probability 0.481 between residues 27 and 28" misc_feature 131692..132909 /gene="ulaA" /locus_tag="SEQ_0124" /inference="protein motif:PFAM:PF04215" /note="HMMPfam hit to PF04215, sugar-specific permease, SgaT/UlaA, score 2.6e-113" misc_feature join(131701..131769,131788..131856,131947..132015, 132034..132102,132112..132180,132349..132417, 132460..132528,132622..132690,132700..132768, 132802..132870,132937..133005) /gene="ulaA" /locus_tag="SEQ_0124" /inference="protein motif:TMHMM 2.0" /note="11 transmembrane helices predicted for SEQ0124 by TMHMM2.0 at aa 4-26, 33-55, 86-108, 115-137, 141-163, 220-242, 257-279, 311-333, 337-359, 371-393 and 416-438" misc_feature 132241..132291 /gene="ulaA" /locus_tag="SEQ_0124" /inference="protein motif:Prosite:PS00453" /note="PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1." misc_feature 132994..133017 /gene="ulaA" /locus_tag="SEQ_0124" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 133038..133895 /locus_tag="SEQ_0125" /db_xref="GeneID:7695557" CDS 133038..133895 /locus_tag="SEQ_0125" /codon_start=1 /transl_table=11 /product="transketolase subunit" /protein_id="YP_002745545.1" /db_xref="GI:225869598" /db_xref="GeneID:7695557" /translation="MVLSDEPLTDVKRFAAEIRLNTLETLNHLGFGHYGGSLSIVELL AVLYGEIMPMTPELFVQSDRDYLVLSKGHAGPALYSTLYLKGFFDKAFLQSLNTNGTS LPSHPDRLLTPGIDMTTGSLGQGISVATGIAYAQALEQSPHYTYAIVGDGELNEGQCW EAIQLAAHQQLSHFIVFVDDNKKQLDGTTEAICRPGDFVEKFTAFGFESLRVDGRDVQ AIFEAIRALQASSSHKPKCIVLDTVKGQGVSQLESMAANHHLRPTAAEKEMLAAAVRK LRASLEVTR" misc_feature 133065..133883 /locus_tag="SEQ_0125" /inference="protein motif:PFAM:PF00456" /note="HMMPfam hit to PF00456, Transketolase, thiamine diphosphate b, score 1.2e-19" gene 133892..134824 /locus_tag="SEQ_0126" /db_xref="GeneID:7695558" CDS 133892..134824 /locus_tag="SEQ_0126" /codon_start=1 /transl_table=11 /product="transketolase subunit" /protein_id="YP_002745546.1" /db_xref="GI:225869599" /db_xref="GeneID:7695558" /translation="MTRASQEMRHVYRDFLIAANQEHPEVVVLEADLSSSMATNHLDQ VFGKRYINVGIMEAEMVGLAAGLAIKGYKPYLHTFGPFASRRVFDQLFLSLAYAQLGA TVIGSDAGVSAEMNGGTHMPFEDLGLLRLIPRAIVYEVSDDVQFKAVLKETLSLDGLK YIRTIRKKPEAIYQGHEDFSNGYCLLRQGKDLVLACSGIMVKRCLEVADKMAEQGYSI GVIDVFRVKPLADELKGLLTGSPVLTVENHNRIGGLGSAICELLAQESNTPVYRMGVD ERFGQVGQMDYLLEEYQLTPAAIEQQVLRILAAD" misc_feature 133907..134407 /locus_tag="SEQ_0126" /inference="protein motif:PFAM:PF02779" /note="HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 1.4e-15" misc_feature 134435..134788 /locus_tag="SEQ_0126" /inference="protein motif:PFAM:PF02780" /note="HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 2e-16" gene 135376..137271 /locus_tag="SEQ_0128" /db_xref="GeneID:7695559" CDS 135376..137271 /locus_tag="SEQ_0128" /codon_start=1 /transl_table=11 /product="endopeptidase O" /protein_id="YP_002745547.1" /db_xref="GI:225869600" /db_xref="GeneID:7695559" /translation="MTTYQEDFYQAVNGQWAETAVIPDDKPRTGGFSDLADEIEDLML TTTDAWLAGEHVPNDAILENFVKFHRLVADYDKRDQVGVAPALDLIEEYKALGSFAEF ASKVADYELNGKPNQFPFSVAPDFMNAQLNVLWAEAPGLILPDTTYYAKDNDKGKELL AIWRGMQEELLPKFGFSHEEVKDLLDKVITLDKQLADYVLSREEYSEYAKLYHPYDWA EFTKLVPELPLDNIFTVILGEVPDKVVVPEERFWTEFAADYYSEKNWELLKAWLVLTA AGAYHAYLTDEIRVLSGVYSRALSGTPQAMDKKKAAYYLAQGPFNQALGLWYAGEKFS PEAKADVEHKVAKMIEVYKSRLETADWLAPATREKAITKLNVITPHIGYPEKLPETYA KKVIDDKLSLVENAQNLAKISIAHSWSKWNKPVDRSEWHMPANMVNAYYDPQQNQIVF PAAILQAPFYSLSQSSSANYGGIGAVIAHEISHAFDTNGASFDEHGSLKNWWTDEDYA AFKERTDKIVEQFDGLDSYGAKVNGKLTVSENVADLGGVACALEAAQSEPDFSARDFF INFATIWRMKAREEFMQMMASIDVHAPGQWRTNVTLTNFDEFHQEFNIKEGDPMWRAP EDRVIIW" misc_feature 135382..136527 /locus_tag="SEQ_0128" /inference="protein motif:PFAM:PF05649" /note="HMMPfam hit to PF05649, Peptidase family M13, score 1.2e-171" misc_feature 136687..137259 /locus_tag="SEQ_0128" /inference="protein motif:PFAM:PF01431" /note="HMMPfam hit to PF01431, Peptidase family M13, score 2.5e-73" misc_feature 136801..136830 /locus_tag="SEQ_0128" /inference="protein motif:Prosite:PS00142" /note="PS00142 Neutral zinc metallopeptidases, zinc-binding region signature." gene complement(137471..138511) /gene="tsf" /locus_tag="SEQ_0129" /db_xref="GeneID:7695560" CDS complement(137471..138511) /gene="tsf" /locus_tag="SEQ_0129" /codon_start=1 /transl_table=11 /product="elongation factor Ts" /protein_id="YP_002745548.1" /db_xref="GI:225869601" /db_xref="GeneID:7695560" /translation="MAEITAKLVKELREKSGAGVMDAKKALVETDGDMEKAIELLREK GMAKAAKKADRVAAEGLTGVYVNGNVAAVVEVNAETDFVAKNAQFVELVNATAKAIAE GKPANNDEALALIMPSGETLADAYVNATATIGEKISFRRFALVEKTDDQHFGAYQHNG GRIGVITVVEGGDEALAKQVSMHVAAMKPTVLSYTELDPQFIKDELAQLNHAIELDNE SRAMVNKPALPFLKYGSKAQLSADVIAQAEEDIKAELAAEGKPEKIWDKIIPGKMDRF MLDNTKVDQAYTLLAQVYIMDDSKTVEAYLDSVNAKAISFARFEVGEGIEKKANDFES EVAATMAAALNN" misc_feature complement(137543..138343) /gene="tsf" /locus_tag="SEQ_0129" /inference="protein motif:PFAM:PF00889" /note="HMMPfam hit to PF00889, Elongation factor TS, score 2.7e-54" misc_feature complement(138380..138502) /gene="tsf" /locus_tag="SEQ_0129" /inference="protein motif:PFAM:PF00627" /note="HMMPfam hit to PF00627, UBA/TS-N domain, score 5.5e-12" gene complement(138679..139449) /gene="rpsB" /locus_tag="SEQ_0130" /db_xref="GeneID:7695561" CDS complement(138679..139449) /gene="rpsB" /locus_tag="SEQ_0130" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S2" /protein_id="YP_002745549.1" /db_xref="GI:225869602" /db_xref="GeneID:7695561" /translation="MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQ QTVKLADQAYEFVRDAAANDAVILFVGTKKQAAEAVADEATRAGQYFINHRWLGGTLT NWGTIQKRIARLKEIKRMEEEGTFEVLPKKEVALLNKQRARLEKFLGGIEDMPRIPDV MYVVDPHKEQIAVKEAKKLGIPVVAMVDTNADPDDIDVIIPANDDAIRAVKLITAKLA DAVIEGRQGEDAEVAFEADTQAESIEEIVEVVEGSNEA" misc_feature complement(138775..139425) /gene="rpsB" /locus_tag="SEQ_0130" /inference="protein motif:PFAM:PF00318" /note="HMMPfam hit to PF00318, Ribosomal protein S2, score 1.5e-100" misc_feature complement(139399..139434) /gene="rpsB" /locus_tag="SEQ_0130" /inference="protein motif:Prosite:PS00962" /note="PS00962 Ribosomal protein S2 signature 1." gene complement(139910..141442) /locus_tag="SEQ_0131" /db_xref="GeneID:7695562" CDS complement(139910..141442) /locus_tag="SEQ_0131" /EC_number="1.6.99.3" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase" /protein_id="YP_002745550.1" /db_xref="GI:225869603" /db_xref="GeneID:7695562" /translation="MALSPDIKEQLAQYLNLLESDLVLQAYLGSDDSSQKVKDFIEEI AAMSDRITVEETTLTRQPSFKITQKGQDSGVIFAGLPLGHEFASFILALLQVSGRAPK IEQDIIDRIRAIDRPLSFETYVSLTCHNCPDVVQALNIMAVLNKNISHTMVEGGMFQE EVKAKGIMSVPTVFLNGEEFTSGRATIEQLLEQIAGPLSKEAFADKGVYDVLVIGGGP AGNSAAIYAARKGLNTGLLAETFGGQVMETVGIENMIGTLYTEGPKLMAQVEEHTKSY DVDIIKAQLATSIEKKDLVEVTLANGAVLKAKTAILALGAKWRSINVPGENEFKNKGV TYCPHCDGPLFEDKNVAVIGGGNSGLEAALDLAGLAKHVYVLEFLPELKADKVLQDRA AKTDNMTILKNVATKDIVGDDHVTGLNYIERDSNQEKHLDLEGVFVQIGLVPNTAWLK DSGISLTDRGEIIVDKYGSTNIPGIFAAGDCTDSAYKQIIISMGSGATAAIGAFDYLI RQ" misc_feature complement(139985..140815) /locus_tag="SEQ_0131" /inference="protein motif:PFAM:PF07992" /note="HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 5.9e-51" misc_feature complement(140120..140398) /locus_tag="SEQ_0131" /inference="protein motif:PFAM:PF00070" /note="HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 1.7e-17" misc_feature complement(140372..140434) /locus_tag="SEQ_0131" /inference="protein motif:Prosite:PS00573" /note="PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site." misc_feature complement(140498..140815) /locus_tag="SEQ_0131" /inference="protein motif:PFAM:PF00070" /note="HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 0.0026" gene complement(141463..142023) /locus_tag="SEQ_0132" /db_xref="GeneID:7695563" CDS complement(141463..142023) /locus_tag="SEQ_0132" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase subunit C" /protein_id="YP_002745551.1" /db_xref="GI:225869604" /db_xref="GeneID:7695563" /translation="MSLVGKEIAEFSAQAFHNGKFITVTNEDLKGKWAVVCFYPADFS FVCPTELGDLQEQYEILKSLGVEVYSVSTDTHFVHKAWHDDSDVVGTITYPMIGDPSH AISQAFDVLGEDGLAQRGTFIIDPDGVIQMMEINADGIGRDASSLIDKIRAAQYVRKH PGEVCPAKWKEGAETLTPSLDLVGKI" misc_feature complement(141490..142014) /locus_tag="SEQ_0132" /inference="protein motif:PFAM:PF00578" /note="HMMPfam hit to PF00578, AhpC/TSA family, score 7.7e-90" misc_feature complement(141562..142017) /locus_tag="SEQ_0132" /inference="protein motif:PFAM:PF08534" /note="HMMPfam hit to PF08534, Redoxin, score 6e-14" gene 142371..142441 /gene="tRNA-Cys" /locus_tag="SEQ__t32" /db_xref="GeneID:7695564" tRNA 142371..142441 /gene="tRNA-Cys" /locus_tag="SEQ__t32" /product="tRNA-Cys" /note="tRNA Cys anticodon GCA, Cove score 60.11" /db_xref="GeneID:7695564" repeat_region 142425..142442 /note="18mer direct repeat flanking prophage" misc_feature 142443..182238 /note="prophage phiSeq1" repeat_region 142543..142563 /note="21mer direct repeat flanking prophage" gene complement(142548..143615) /locus_tag="SEQ_0133" /db_xref="GeneID:7696972" CDS complement(142548..143615) /locus_tag="SEQ_0133" /codon_start=1 /transl_table=11 /product="integrase" /protein_id="YP_002745552.1" /db_xref="GI:225869605" /db_xref="GeneID:7696972" /translation="MAKFRKRGDKWSYRIYYTDSQGNKREKSKGGFKTKALASAAAIK VEAELNKDIDDISLYDFCKDWAEIYKRPHVVDKTWETYTKNLKHIKKYFGDIKLNKVT HTLYQKKMNVFASKYAQETLEKFHYQIKGAVKVAVRDGLIKTNFAEGAIVKSQKEARA KEFDFLEEDEYLNLIKVTSEKYQYISYFTLYIIAVTGLRFAEATGITWSDIDFEKGFI DINKSFDYSKTQEFKETKNEQSKRQIPIDQQTIKLLRAFKENYYKENKLNRVLYGASN SLCNRLVKKIVGRPVRNHSLRHTYASFLILKGVDLISISQLLGHENLNITLKVYAHQL DKLKEKNNQAIKDIFGNLTDF" misc_feature complement(142596..143096) /locus_tag="SEQ_0133" /inference="protein motif:PFAM:PF00589" /note="HMMPfam hit to PF00589, Phage integrase family, score 4.5e-19" gene complement(143883..144569) /locus_tag="SEQ_0134" /db_xref="GeneID:7695565" CDS complement(143883..144569) /locus_tag="SEQ_0134" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745553.1" /db_xref="GI:225869606" /db_xref="GeneID:7695565" /translation="MGKIDKAARKFKFVSNSKISKFRFLPDWVLSEATYFEKEVIEPS QNHKIYKRGALVFVDFGVNVGSELSGHHFAIVLNKKDSFKNGVLTVIPVSSKGNKFSV KLDGFISQKSKEYLDKTLAQKQEGFYRYRAERIKKHNGKSKTHDELMQYEKQKWVYFK IAEEIKEVAKAYEKYNKVSYAKCLDIRTISKNRIMEINRFDPIGKIRVSDDTLTKIDK MIINNFIHTI" gene complement(144580..145326) /locus_tag="SEQ_0135" /db_xref="GeneID:7695566" CDS complement(144580..145326) /locus_tag="SEQ_0135" /codon_start=1 /transl_table=11 /product="phage repressor protein" /protein_id="YP_002745554.1" /db_xref="GI:225869607" /db_xref="GeneID:7695566" /translation="MDIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVP TEVLEKISKILNTNPAYFMGWSDTPTPVQTQTLQEIIVTSKQLEQPRQEKVLSFANEQ LEEQNKVVSIFDKKSEETEDYITDYVEGLVAAGLGAYQEDNLHMEVKLRADDVPDEYD TIAKVAGDSMEPLIQDNDLLFIKVSSQVNMNDIGIFQVNGKNFVKKLKRDYDGAWYLQ SLNNSYEEIYLSEDDSIRTIGEVVDIYREG" misc_feature complement(144631..144837) /locus_tag="SEQ_0135" /inference="protein motif:PFAM:PF00717" /note="HMMPfam hit to PF00717, Peptidase S24-like, score 4.8e-17" misc_feature complement(145141..145308) /locus_tag="SEQ_0135" /inference="protein motif:PFAM:PF01381" /note="HMMPfam hit to PF01381, Helix-turn-helix, score 1.7e-15" misc_feature complement(145216..145281) /locus_tag="SEQ_0135" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 2380.000, SD 7.29 at aa 16-37, sequence VSVEELAKKLGVSKTTIYRYEK" gene 145490..145705 /locus_tag="SEQ_0136" /db_xref="GeneID:7695567" CDS 145490..145705 /locus_tag="SEQ_0136" /codon_start=1 /transl_table=11 /product="phage repressor" /protein_id="YP_002745555.1" /db_xref="GI:225869608" /db_xref="GeneID:7695567" /translation="MVNVQKLKGVIVEKGTTQQAVADSIGIDRSTFYRKMKSGGAFTL DEAGNIARAISLTKEEAIEIFFSNVVA" misc_feature 145535..145600 /locus_tag="SEQ_0136" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1591.000, SD 4.61 at aa 16-37, sequence TTQQAVADSIGIDRSTFYRKMK" gene 145740..145889 /locus_tag="SEQ_0137" /db_xref="GeneID:7695568" CDS 145740..145889 /locus_tag="SEQ_0137" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745556.1" /db_xref="GI:225869609" /db_xref="GeneID:7695568" /translation="MPEDLIKQLEAGSEFLAKTCLHSKIIITVDGIRLVETKEFHPVS GTLLD" gene complement(145886..146086) /locus_tag="SEQ_0138" /db_xref="GeneID:7695569" CDS complement(145886..146086) /locus_tag="SEQ_0138" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745557.1" /db_xref="GI:225869610" /db_xref="GeneID:7695569" /translation="MQRQYVSSSNVRSVGWENNTLEVEFNNGSIYHYHNVSQTEYRSV LVGSVGSNIHRLAKIHTYTRIV" gene 146197..146481 /locus_tag="SEQ_0139" /db_xref="GeneID:7695570" CDS 146197..146481 /locus_tag="SEQ_0139" /codon_start=1 /transl_table=11 /product="DNA-binding phage protein" /protein_id="YP_002745558.1" /db_xref="GI:225869611" /db_xref="GeneID:7695570" /translation="MDSRLLQMLDEFEAGLIDRKIKVIGMLNNETEIYPLELNKKQIS KMLGVDPKTFDVRFNSHKDFPRIETGGREKYPRDLVIEWYSKNWERTGIR" misc_feature 146308..146373 /locus_tag="SEQ_0139" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1182.000, SD 3.21 at aa 38-59, sequence LNKKQISKMLGVDPKTFDVRFN" gene 146478..146624 /locus_tag="SEQ_0140" /db_xref="GeneID:7695571" CDS 146478..146624 /locus_tag="SEQ_0140" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745559.1" /db_xref="GI:225869612" /db_xref="GeneID:7695571" /translation="MIKKLFNFIFAKPKEESRQPYQQPRGFLDFETGRRIEIDPKTQK EYFV" gene 146621..146734 /locus_tag="SEQ_0141" /db_xref="GeneID:7695572" CDS 146621..146734 /locus_tag="SEQ_0141" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745560.1" /db_xref="GI:225869613" /db_xref="GeneID:7695572" /translation="MMHQIKLSLRNFVETGEIDNIFDIFRILDFYFREVVS" gene 146828..147073 /locus_tag="SEQ_0142" /db_xref="GeneID:7695573" CDS 146828..147073 /locus_tag="SEQ_0142" /codon_start=1 /transl_table=11 /product="DNA-binding phage protein" /protein_id="YP_002745561.1" /db_xref="GI:225869614" /db_xref="GeneID:7695573" /translation="MLLTILSNSDEWRVYPEELAKRCRDSVDAVRTQLKALEKAGYIR SYRKSLGGRYGTETHRFCSDTKISDEVFQELLKELNC" gene 147250..147633 /locus_tag="SEQ_0143" /db_xref="GeneID:7695574" CDS 147250..147633 /locus_tag="SEQ_0143" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745562.1" /db_xref="GI:225869615" /db_xref="GeneID:7695574" /translation="MDEKKLFENFQLTFGRMISPFEIEDIQKWIHQDNMPIDVVNLAL REAVENNKINWKYINKILVEWHKAGDTTIEKVKERLQRFEDSKEQRHATISNVPSWSN PDYQGPTYDDLKVNPSEVSDGAGDF" gene 147614..147847 /locus_tag="SEQ_0144" /db_xref="GeneID:7695575" CDS 147614..147847 /locus_tag="SEQ_0144" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745563.1" /db_xref="GI:225869616" /db_xref="GeneID:7695575" /translation="MAQEIFDGFNALINKMYGRQSSIETFNRFVEYCQKRREENGVEP VLNPINLFAFGVGITTEEANKLRIKRYKQENGL" gene 147844..147984 /locus_tag="SEQ_0145" /db_xref="GeneID:7695576" CDS 147844..147984 /locus_tag="SEQ_0145" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745564.1" /db_xref="GI:225869617" /db_xref="GeneID:7695576" /translation="MTKQYRETLIWHRASHQEREKLLDFGLVDKSQYMMLLRQLRKKY AI" gene 147993..148199 /locus_tag="SEQ_0146" /db_xref="GeneID:7695577" CDS 147993..148199 /locus_tag="SEQ_0146" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745565.1" /db_xref="GI:225869618" /db_xref="GeneID:7695577" /translation="MTPEEAEKAKSRAKQEIEVFSIYLEQAIDTFGSMLSPQEVFLAA GITYLGAGQTDIHAAVEGLYEQIQ" gene 148183..148359 /locus_tag="SEQ_0147" /db_xref="GeneID:7695578" CDS 148183..148359 /locus_tag="SEQ_0147" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745566.1" /db_xref="GI:225869619" /db_xref="GeneID:7695578" /translation="MNKSNDFNFSDDWESNYFEVQALLGQEIDKLQNRVIALSQENNR LKAENWQLKHRKRK" gene 148361..149281 /locus_tag="SEQ_0148" /db_xref="GeneID:7695756" CDS 148361..149281 /locus_tag="SEQ_0148" /codon_start=1 /transl_table=11 /product="phage RecT family protein" /protein_id="YP_002745567.1" /db_xref="GI:225869620" /db_xref="GeneID:7695756" /translation="MANQLAHKDFFNAPVVQKKFSEVLGNNSTQFIASLLGIVNNSDL LAKASNESIMTAAMTAATLKLPIQQSLGYAYIVPYKGQAQFQLGYKGLIQLAQRSGQY KNINTGIVYKSQLISYNPLFEELVLDFSKPQDEIVGYFAAFKLLNGFEKVSFWSAEKA AAHGKRFSKSFASGPWKTDFDAMAQKTVLKDILSKYGPLSVEMQKAIEEDNKDSRVSN PKDITPPETNSLDDLIGHQNEKKDAPSNLKDVTDDLHSEPEKTLTDENKTVLEDASYP ADEIPDFDQETGEIMASDGNLFDNLGDLMP" misc_feature 148442..149071 /locus_tag="SEQ_0148" /inference="protein motif:PFAM:PF03837" /note="HMMPfam hit to PF03837, RecT family, score 2.4e-66" gene 149278..150075 /locus_tag="SEQ_0149" /db_xref="GeneID:7695757" CDS 149278..150075 /locus_tag="SEQ_0149" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745568.1" /db_xref="GI:225869621" /db_xref="GeneID:7695757" /translation="MTKLDLLGKDYYSRESAIRYWSISQYKHFKECEARALAELRGDW TDTRDNTALLVGNYVHSYFESKAAHEEFKAQNGSEMISTRGATKGQLKKDYLVAEQMI EALKSDSNFMAIYQGEKEAAITGFLGEIEFKGKIDCLNVERGYFVDIKTTKGPIDDTI WNGAERVRWFEAYGYILQMAAYKTMLEAKYNKPFEPIIYAVTKETPPDTRAIRIQNLD AMQNELDNLAQNIKRLDDVKKGIEKSKPCGHCEYCRANQLTQRVMIF" gene 150181..150595 /locus_tag="SEQ_0150" /pseudo /db_xref="GeneID:7695758" misc_feature 150181..150595 /locus_tag="SEQ_0150" /note="CDS contains a frameshift after codon 18. Similar to Streptococcus pyogenes serotype M18 phage protein UniProt:Q8P088 (EMBL:AE010065 (137 aa) fasta scores: E()=5.3e-45, 96.350% id in 137 aa. Possible alternative translational start site after codon 24 which may generate a functional protein. Similar to Streptococcus pyogenes serotype M18 phage protein UniProt:Q8P1S1 (EMBL:AE010005 (113 aa) fasta scores: E()=3.6e-36, 98.230% id in 113 aa" /pseudo /db_xref="PSEUDO:CAW92128.1" gene 150592..151104 /locus_tag="SEQ_0151" /db_xref="GeneID:7695759" CDS 150592..151104 /locus_tag="SEQ_0151" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745569.1" /db_xref="GI:225869622" /db_xref="GeneID:7695759" /translation="MSNLVLSLDISTSGTGWALFKGSDLIQSGVLKHKSDSYFERGRY MASQLRAIQSRALKKYDCSFSTIAVEKNSVMGPNQQSMLKIGIVTGIILGRLIADNVV FINVSTWRKHWKFSYKDRSKKAMKAQSKAKAAENFGKIVKDDEADAVLIGAYYVNQGY LDGLETHDYY" gene 151091..151303 /locus_tag="SEQ_0152" /db_xref="GeneID:7695760" CDS 151091..151303 /locus_tag="SEQ_0152" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745570.1" /db_xref="GI:225869623" /db_xref="GeneID:7695760" /translation="MTTTKKHVVRIYNKGITATYAVTDKRLFREHEFATKREAMQFIR ELELANDKRATEYYLREWRDANGRYV" gene 151287..151565 /locus_tag="SEQ_0153" /db_xref="GeneID:7695761" CDS 151287..151565 /locus_tag="SEQ_0153" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745571.1" /db_xref="GI:225869624" /db_xref="GeneID:7695761" /translation="MEDTFKKIKELEAACQDRTDNIKKPSHYQGRHGMEAIDVVKNFA ACPEHEEGFYWGNAVKYLLRYHAKNGVEDLKKARQNLDWLIEKLEEVE" gene 151562..151813 /locus_tag="SEQ_0154" /db_xref="GeneID:7695762" CDS 151562..151813 /locus_tag="SEQ_0154" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745572.1" /db_xref="GI:225869625" /db_xref="GeneID:7695762" /translation="MILTKDLAKKHLGCYVDRYRRNDVINGMFPKRIVELPDGRLYLR NPIGVYTKIEEDLDIDYIFKPIKVLEFLSETEVNDDTEI" gene 151797..152189 /locus_tag="SEQ_0155" /db_xref="GeneID:7695763" CDS 151797..152189 /locus_tag="SEQ_0155" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745573.1" /db_xref="GI:225869626" /db_xref="GeneID:7695763" /translation="MIPKFRVWDEDNHKMSYSDYYNVVVLSDKVYLRETLRKHQKEGK ESLVESNVKDEYIMPLAYSDGKTTIYDKDIIRDWSTGELGVVVYDNEDCAWKVKTDTT EEWLYNWLGCDVIGNTYEDPELLERVEE" gene 152186..152392 /locus_tag="SEQ_0156" /db_xref="GeneID:7695764" CDS 152186..152392 /locus_tag="SEQ_0156" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745574.1" /db_xref="GI:225869627" /db_xref="GeneID:7695764" /translation="MTVKELIEKLQEYPDWLNVKLRLFDVDLLEAAYEANNPRRDDVI SDEKETINVDRTDLNELEISAQGY" gene 152403..152672 /locus_tag="SEQ_0157" /db_xref="GeneID:7695765" CDS 152403..152672 /locus_tag="SEQ_0157" /codon_start=1 /transl_table=11 /product="phage membrane protein" /protein_id="YP_002745575.1" /db_xref="GI:225869628" /db_xref="GeneID:7695765" /translation="MTEEQMIDCLLYELVKKDKAIEKKNIIIAVLTVMLCLVSVFSIA LQNHYEPQIYGLRAQLSRTQKQLKRASEDRARQTKRLADLTGNGG" misc_feature 152478..152537 /locus_tag="SEQ_0157" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0157 by TMHMM2.0 at aa 26-45" gene 152669..153343 /locus_tag="SEQ_0158" /db_xref="GeneID:7695766" CDS 152669..153343 /locus_tag="SEQ_0158" /codon_start=1 /transl_table=11 /product="phage DNA methylase" /protein_id="YP_002745576.1" /db_xref="GI:225869629" /db_xref="GeneID:7695766" /translation="MKMFTNEDCMQLMARYPDKHFDLAIVDPPYFSGPEKRQYYGRKI SPIGVKRVYEQTTQWAIPGKDYFDELFRVSKNQIIWGVNYYDYPFGSGRIIWDKVNGS SSFSDCEIAYCSLHDSARLFRYMWNGMMQGKSIAEGHVQQGNKKLNEKRIHPTQKPVN LYIWLLQKYAKTGDKILDTHVGSASSLIACKELGFDYVGCELDTHIYNKAIDRLCEYD NKIKLV" misc_feature 152729..153304 /locus_tag="SEQ_0158" /inference="protein motif:PFAM:PF01555" /note="HMMPfam hit to PF01555, DNA methylase, score 1.2e-05" misc_feature 152738..152758 /locus_tag="SEQ_0158" /inference="protein motif:Prosite:PS00092" /note="PS00092 N-6 Adenine-specific DNA methylases signature." misc_feature 153206..153238 /locus_tag="SEQ_0158" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 153359..154132 /locus_tag="SEQ_0159" /db_xref="GeneID:7695767" CDS 153359..154132 /locus_tag="SEQ_0159" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745577.1" /db_xref="GI:225869630" /db_xref="GeneID:7695767" /translation="MNINDLKKGDKVWVEGIISSSFSNGGVHVNHAGIDAFYNLERTK IKPDGYAEQSPKYLKNIIAKMRELPEHDRAVWIEGIFNEFGIDNSISYYLGHKQGVLQ EKDSLKPEIPSFVADWIEKHKAYYIKWEKDDKADFVFRSIDDLFNYGESLCTNDFVIS SDLSKWTKEHAYDFIIAILFGYTVKKEKLYIVELPNPNSDIEHKHIALVRLANGKLGF SEIIDTDFSLREDIKLTEEEIRKDHDWAWREEFPKEVNE" misc_feature 153674..154126 /locus_tag="SEQ_0159" /inference="protein motif:PFAM:PF07852" /note="HMMPfam hit to PF07852, Protein of unknown function (DUF1642), score 2.4e-20" gene 154129..154296 /locus_tag="SEQ_0160" /db_xref="GeneID:7695768" CDS 154129..154296 /locus_tag="SEQ_0160" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745578.1" /db_xref="GI:225869631" /db_xref="GeneID:7695768" /translation="MNKSEIKNLVDRLSDLIDKCDNDFEAMVFNPDQTFDLLLASHSA LSKVLRGEVTE" gene 154293..154508 /locus_tag="SEQ_0161" /db_xref="GeneID:7695769" CDS 154293..154508 /locus_tag="SEQ_0161" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745579.1" /db_xref="GI:225869632" /db_xref="GeneID:7695769" /translation="MKSYQKRFVEEYRQLTQRLSKLDKMLKKYAQGTLGFEPDCPIRL LQEQRRVMSEYVDILEARAKFEGVDLE" gene 154524..155018 /locus_tag="SEQ_0162" /db_xref="GeneID:7695770" CDS 154524..155018 /locus_tag="SEQ_0162" /codon_start=1 /transl_table=11 /product="autolysin regulatory protein" /protein_id="YP_002745580.1" /db_xref="GI:225869633" /db_xref="GeneID:7695770" /translation="MRTTPWLYLLTPLYHTEGAFMTFFPEIDIQKTKSNAKRKLKEYP RWRRIANDVDTQKVTATYSFEPRQPHGVPSKPVERLALNRVSAEQELDAIEQAVSMIL EPERRRILYDKYLSPYKKADKVIYTELCMSESFYYDTLDIALLAFAELYREGSLIVEQ GVFS" gene 155228..156394 /locus_tag="SEQ_0163" /db_xref="GeneID:7695771" CDS 155228..156394 /locus_tag="SEQ_0163" /codon_start=1 /transl_table=11 /product="phage DNA methylase" /protein_id="YP_002745581.1" /db_xref="GI:225869634" /db_xref="GeneID:7695771" /translation="MQIQKVSISEIKMYENNAKLHPKKQIEQIKSSIKAFGNNDPIAI DESNIIIEGHGRYTALKELGYDEVDVIKLTHLTEEQKKAYILAHNKLTMNTGFDIDIL TEELQSIMDIDMSVFGFDVDLAAAFEEIDKELDNFDNTLPEDPKSKFGQIYQLGRHRL MCGDGTNQSDVKKLMGGELADLLITDPPYNVAYQGKTKDALTIQNDNMDSNAFRQFLG EAFKAADSVIKPGAVFYIWHADSEGYNFRGACLDVGWTVRQCLIWNKNAMVLGRQDYH WKHEPCLYGWKDGASHLWASDRKQTTVIDFDKPQRNGDHPTMKPVGLFDYQIKNNTKG HDIVLDLFGGSGTTLIACESNGRCARLMECDPKYVDVIIKRWEELTGESVIQLN" misc_feature 155237..155497 /locus_tag="SEQ_0163" /inference="protein motif:PFAM:PF02195" /note="HMMPfam hit to PF02195, ParB-like nuclease domain, score 7.8e-11" misc_feature 155765..156349 /locus_tag="SEQ_0163" /inference="protein motif:PFAM:PF01555" /note="HMMPfam hit to PF01555, DNA methylase, score 7.9e-15" misc_feature 155774..155794 /locus_tag="SEQ_0163" /inference="protein motif:Prosite:PS00092" /note="PS00092 N-6 Adenine-specific DNA methylases signature." misc_feature 156251..156283 /locus_tag="SEQ_0163" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 156675..157151 /locus_tag="SEQ_0164" /db_xref="GeneID:7695772" CDS 156675..157151 /locus_tag="SEQ_0164" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745582.1" /db_xref="GI:225869635" /db_xref="GeneID:7695772" /translation="MANEDNLIPNSKRTPGELREIAKKGGIASGKARREKANLRKAVE LVLGSTVPSAMLREQLEQLDISPTNQSAIALKLVENALKGDVRSAELLAKITTTEVKD SLDRKEQRQRIKAAELATDEQRTRIELLKVKLDAEKGAKPDTHLMEKLLEVVEDGS" gene 157141..158436 /locus_tag="SEQ_0165" /db_xref="GeneID:7695773" CDS 157141..158436 /locus_tag="SEQ_0165" /codon_start=1 /transl_table=11 /product="phage terminase" /protein_id="YP_002745583.1" /db_xref="GI:225869636" /db_xref="GeneID:7695773" /translation="MAVRIKKLSTKQKDIIRRPFNYELEVNEGTPRSGKTTAGHFRYA RYLIESEDENHLVTAYNQEQAYRLFIDGDGTGLMHIFDGNCEIKHDERGDHLLVTTPK GNKRVYYKGGGKVNSVGAITGMSLGSVVFCEINLLHMDFIQECFRRTWAAKLRYHLAD LNPPAPQHPVIKDVFDVQNTRWTHWTMDDNPILTAERKQNIINSLKKNPYLYKRDVLG QRVMPQGVIYGLFDMEKNVLDTLIGEPVEMYFCADGGQADATSMSCNIVTRVRDNGKI SFRLNRTAHYYHSGADTGQIKAMSTYAVELKAFIAWCVKKYQMRYTEVFVDPACKALR EELHKLGIFTTPAPNNAKDVSSKSKGIEVGIERGQNIISDGVFHLVNHIEEEYDHYHF LKEIGLYSRDDNGKPIDKDNHAMDEFRYSVNVFVHRYYN" misc_feature 157216..158415 /locus_tag="SEQ_0165" /inference="protein motif:PFAM:PF03237" /note="HMMPfam hit to PF03237, Terminase-like family, score 1.6e-27" misc_feature 157225..157248 /locus_tag="SEQ_0165" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 158449..159951 /locus_tag="SEQ_0166" /db_xref="GeneID:7695774" CDS 158449..159951 /locus_tag="SEQ_0166" /codon_start=1 /transl_table=11 /product="minor capsid protein" /protein_id="YP_002745584.1" /db_xref="GI:225869637" /db_xref="GeneID:7695774" /translation="MGVIQQIKNFLIRSKYVMTTQDLVNITDHPKIAVTEGEYQRIQS NLVYYQSIFNDVEYLNTDGELKKRKLNHLPIARTAAKKIASLVFNEQAEIKVTDKVAD EFINSTLKNDRFNKNFERYLESCLALGGMAMRPYVDNDKIRVAFIQAPVFLPLQYNTQ DVSSAAIVIKTVKKVGDKTFYYTLIEIHEWKNQNDYVITNELYKTDNSSEVGRRVPLE ELYGDLKDKVNVTKVTRPLFTYLKPPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDE FRWEVKMGQRRVAVPESLTALNVRTVDSDVVPRPRFEPDQNVYIRMGGRDLDSSAIQD LTTPIRADDYIKAINEGLALFEMQLGVSAGLFSFDGKSVKTATEIVSENSDTYQMRNS IVALVEQSLKELVISIFELAAGTGLYEGSIPGMDDISINLDDGVFTDRKAELDYWIKV VGAGFGTQAMAIQKVLNVTDEEAKKIQAEVNTGIAKAINKQRTDVDLYGE" gene 159956..161119 /locus_tag="SEQ_0167" /db_xref="GeneID:7695775" CDS 159956..161119 /locus_tag="SEQ_0167" /codon_start=1 /transl_table=11 /product="minor capsid protein" /protein_id="YP_002745585.1" /db_xref="GI:225869638" /db_xref="GeneID:7695775" /translation="MKKKPVKLNDEQFFLEASQVSDLYHQLILDLFDQVIQRIKARGP ASLTDNPYLWQTAKLHETGLLNADNIKLISKYSGVAEAQLRRVIENEGFKIYDDTAQQ LREALNTRPEISSSIQDDLANYARQAIADVHNLINTTLPASVIGAYQSIVQETVAGVV TGLKTPDQAINQTVMRWFKKGFYGFTDKSGRQWRADSYARTVVNTTAWRVFNEAKEAP AREFGIDTFYYSKKATARDMCAPLQHQIVTTGEAREKDGVKILALSDYGYGKPEGCLG TNCKHTKTPYVIGANTKPELPDYLKNLTPAQAKANANAQAKQRAIERSIRRSKELLHV AKQLADKDLVSKYQTQIRVKQGALKHLINNNDFLTYRQANIKAFLHHKTGGTK" misc_feature 159956..161050 /locus_tag="SEQ_0167" /inference="protein motif:PFAM:PF06152" /note="HMMPfam hit to PF06152, Phage minor capsid protein, score 5.5e-213" gene 161116..161340 /locus_tag="SEQ_0168" /db_xref="GeneID:7695776" CDS 161116..161340 /locus_tag="SEQ_0168" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745586.1" /db_xref="GI:225869639" /db_xref="GeneID:7695776" /translation="MNKRIKKKRKLETAVVMLTKEVAELRAIVSTKAQATNSELTVVK SAVSDNQAAIKSIGDDVDYIKKNYKRKWRK" sig_peptide 161116..161220 /locus_tag="SEQ_0168" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0168 by SignalP 2.0 HMM (Signal peptide probability 0.785) with cleavage site probability 0.435 between residues 35 and 36" gene 161342..161599 /locus_tag="SEQ_0169" /db_xref="GeneID:7695777" CDS 161342..161599 /locus_tag="SEQ_0169" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745587.1" /db_xref="GI:225869640" /db_xref="GeneID:7695777" /translation="MEYTEKAKVLASQEFTRLTGLEIKPEDCFVVWFSKTLQNWKALV STSKTKIADYAEVTHNGDKKETYVDVYTKVSNKAFADHQAR" gene 161710..162258 /locus_tag="SEQ_0170" /db_xref="GeneID:7695778" CDS 161710..162258 /locus_tag="SEQ_0170" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745588.1" /db_xref="GI:225869641" /db_xref="GeneID:7695778" /translation="MENVANENVDQETTNLENSQSENKTFTQDDLTRVGTKEHSKGYN KALKELGFDDADSAQEALKAYRDWQESQKSEAEKQAEVLAAKDKELEEALANNKALNA KLAAMSLGVNVDSIDDVIALSERLVTDEISIDDAIKKVLDKYPHFGQVQDKAPKITVT GNPSVATTNSNDAFLKALGLNN" gene 162273..163145 /locus_tag="SEQ_0171" /db_xref="GeneID:7695779" CDS 162273..163145 /locus_tag="SEQ_0171" /codon_start=1 /transl_table=11 /product="phage major capsid protein" /protein_id="YP_002745589.1" /db_xref="GI:225869642" /db_xref="GeneID:7695779" /translation="MSINYITKHEGVFEKKLMQAALTNILETPKVNWLGAKSFELPTI SVTGYKAHTRSKGYNAGTVSNDKNTYTLGFDRDVEFFVDKADVDETNQELSMANISNT FITEHATPEVDAYRFSKIATNAIDNSHFKQEDDYSTTNVYERLKAAILPIRKYGAGNI IIYVSSEIMDFLERSKDFTRSIATTSPQGIDTRVTSLDGVQLIEVWDDARFKTKFDFT TGFVKDGSGKDINFLIVAKPAVIAKAKFNSIYLFAPGQHTEGDGYLYQNRLYHDLFVL KSKQDGVYVSHKSA" gene 163156..163299 /locus_tag="SEQ_0172" /db_xref="GeneID:7695780" CDS 163156..163299 /locus_tag="SEQ_0172" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745590.1" /db_xref="GI:225869643" /db_xref="GeneID:7695780" /translation="MKTYEKDNQVYKVQEGSELEIQLIADGFKEVKKKQGRKTKEDQS GES" gene 163299..163727 /locus_tag="SEQ_0173" /db_xref="GeneID:7695781" CDS 163299..163727 /locus_tag="SEQ_0173" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745591.1" /db_xref="GI:225869644" /db_xref="GeneID:7695781" /translation="MVFDWGVIVIAFLTQQEFEDLGFDKVEDFAKLEKRAGHAVNLYC RNRYDHKDFKKELAFIQKAVKRAVAYQIAYLDESGVMTAEDKQSFAGISLGRTSISYT VGHGQGSQRKTLADRFNLCLDAENELLAVGLGYAGISYDR" gene 163717..164049 /locus_tag="SEQ_0174" /db_xref="GeneID:7695782" CDS 163717..164049 /locus_tag="SEQ_0174" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745592.1" /db_xref="GI:225869645" /db_xref="GeneID:7695782" /translation="MIDKRLLIDSLQVKLVKRAGDYGGFVYDDPFTISPVRFDRSFAA VGKDNTRQEIKPSVIFIYPKYCKIRADKTWEDAIVIDSDTEYTVNKVIPIYYPHRHKI FCYEVEVI" gene 164049..164405 /locus_tag="SEQ_0175" /db_xref="GeneID:7695783" CDS 164049..164405 /locus_tag="SEQ_0175" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745593.1" /db_xref="GI:225869646" /db_xref="GeneID:7695783" /translation="MAKIVVELGGIKRKVSPQALAKGKLVMNNQVMITMNPYVPYRDG SLRGSSRADSIGVTWSGPHARPQFYGGAYNKYKSFKFKKYTTPGTGKRWDKRALANAT IVKDWEQSLLRGMGFR" gene 164402..164800 /locus_tag="SEQ_0176" /db_xref="GeneID:7695784" CDS 164402..164800 /locus_tag="SEQ_0176" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745594.1" /db_xref="GI:225869647" /db_xref="GeneID:7695784" /translation="MTNDFAVVLRQFIAGLDLGIEPRLDYLTRAEDLVIYPMPGGKVN AEYMDGTREISLPFEIAIKTKNQELANATMWAINGALSNFDLKLQSLNNSYTFTSLDV EKPFLNDLSDQGFYIYVLDLTAHLEIEGKN" gene 164800..165261 /locus_tag="SEQ_0177" /db_xref="GeneID:7695785" CDS 164800..165261 /locus_tag="SEQ_0177" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745595.1" /db_xref="GI:225869648" /db_xref="GeneID:7695785" /translation="MRQKNAFRGHFIAPYKTGVEETDVTKENLLELAKWIKDVSDDTD EKTEDEAYYDGDGTEETTVVGVKGAYTFEGTYDPEDKAQAHIASLKYKLGDDRKVWHR VISSDGKRQWTGVATVTEIIAGSGAAADFEAFGCKITYNSLPKESVPSEVH" gene 165305..165748 /locus_tag="SEQ_0178" /db_xref="GeneID:7695786" CDS 165305..165748 /locus_tag="SEQ_0178" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745596.1" /db_xref="GI:225869649" /db_xref="GeneID:7695786" /translation="MSGIAVDLKRTGFPVKIGQVELWFDTSQERLLEFFDIENEVNRR LNTYEKQIIEANLDKEIEAKGVTKEVAQSALCLEAKYLEINYDLLFGEGAFAQLYAEY PDKEALENTLEIVCREIEAKLKDMAIEREEIVKQKTKKYKKRSNL" misc_feature 165377..165415 /locus_tag="SEQ_0178" /inference="protein motif:Prosite:PS00018" /note="PS00018 EF-hand calcium-binding domain." gene 165745..166326 /locus_tag="SEQ_0179" /db_xref="GeneID:7695787" CDS 165745..166326 /locus_tag="SEQ_0179" /codon_start=1 /transl_table=11 /product="phage Gp15 protein" /protein_id="YP_002745597.1" /db_xref="GI:225869650" /db_xref="GeneID:7695787" /translation="MKLNDPLVESFDFKGEIYSVDLSFNKVLDVFDVINDDFLNEAEK CFLCLDILLDRTDLPFTDAVDLWIYIKTNFIDIERPEKPQLDLKGNPMPVAKAKEDNK KVIDFNLDAEFIYASFMQAYQINLFKVQNKLSWVEFKALLNALPDDTIMQRIIAIRQW KDDGKGDKDYRDNMRKLKTKYSLNDDEEEDDGS" misc_feature 165748..166293 /locus_tag="SEQ_0179" /inference="protein motif:PFAM:PF06854" /note="HMMPfam hit to PF06854, Bacteriophage Gp15 protein, score 3.8e-126" gene 166316..169576 /locus_tag="SEQ_0180" /db_xref="GeneID:7695788" CDS 166316..169576 /locus_tag="SEQ_0180" /codon_start=1 /transl_table=11 /product="phage minor tail protein" /protein_id="YP_002745598.1" /db_xref="GI:225869651" /db_xref="GeneID:7695788" /translation="MAADGKVTILVDVDGKQVKVLNSELDKVAKHGDKGSSSLKKFAI GAGVFKLASAAVDLVTHSLGKAITRFDTLEKYPRVMKAMGHSAEDVARSTDKLANGID GLPTTLDEVVGTAQRLTSITKDINKSTNLTLALNNAFLASGASSEAASRGLEQYAQML SAGKVDMQSWKTLQETMPYALQKTAEAFGFAGTSAQKDFYEALKNGQITFDQFSRKLI ELNDGVGGFAELARENSKGIETSFNNIKNAIAKGVANSIKALDNLSKAATGKSIAEHF DNLKVVINAAFSIINASIKASTPLFKILFSVIGAGISIVKALSPILLGAAAGIAAMRV VNTVITGINAFNAAWAASSAIMAMSSARIALVAPAIQAGTFATKADIVARLSQIGVLK ASTLIYGVMTGVISLSTAATIAATAAVTAFKTALTVLTGPIGWVVAGVGALVAAGVSL WSWLTRESDETKKLKKEQEGLVESNKKLRDSVKEGVQERKKNLESVKESTAAHQKLAD EIVKLAAKENKTAGEKQNLKNKIDQLNGSIDGLNLAYDKNSNSLSHNADQIKARISAM EAESVWQTAQQNLLSIEQKRSEVSKKLAENAELRKKWNEEANVSDSARKEKIAELTEE EGKLKNMQTQLQEEYNKTSATQQAAADAMAAAEEAGAARQVIAYENMSEAQRTAINNM RTKYSELLETTTSIFDAIEQKTALSVAQMSANLEQNRLATEQWANNLKTLAERGVDQG IIEQLRRMGPEGAAQTQVFVDATDAELAPLQENFRAATETAKNAMGNVLDSAGIEMPE KVKSMVTNVSTGLQAELQAANFAQLGQEIPNGVSQGISQGAGKASDASVKMGQEVKNS FKNELGIHSPSRVFTEYGSHITDGLSNGVTNGTSKVMQTMQSMAQQMSQKGQQIVNDM RNKSNEMTNAFSTMSSPMYSHGVNAMQGLANGIYAGAGSALAAAQNIAAQITATIQSA LDIHSPSRVMRDEVGRFIPQGIAVGIDADRKVIDLSMQKLKESMTINATPEIASGFTG GLTGVSNQTTNNSSNSFTLNVNVDESDGNSRDKYQRMFREFCWLIQQQQGRLGDIK" misc_feature join(167228..167296,167315..167383,167504..167572, 167609..167677) /locus_tag="SEQ_0180" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0180 by TMHMM2.0 at aa 305-327, 334-356, 397-419 and 432-454" gene 169573..170289 /locus_tag="SEQ_0181" /db_xref="GeneID:7695789" CDS 169573..170289 /locus_tag="SEQ_0181" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745599.1" /db_xref="GI:225869652" /db_xref="GeneID:7695789" /translation="MTAFIKFDGKKSSDFDLKIINDVEHDSTFCDVDQVKIPGRDGVV LKDNQRLEAIERSYPLRLHSKRRLTEVETDISNWLNAKGWKDLELSWEPDYIYKATHI TPFSIKEVLRNFGSLRANFLIHPIKYLKTGKQEVSLVNGGTLQNPGNVQAKPILKIKG TGNGVLTINGFETGLENVQGELVIDMERHLVYKDVLSAWDNIVRTERHRMPLFDVGQN SISWTGNFTITAVPNWGVKV" gene 170286..172427 /locus_tag="SEQ_0182" /db_xref="GeneID:7695790" CDS 170286..172427 /locus_tag="SEQ_0182" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745600.1" /db_xref="GI:225869653" /db_xref="GeneID:7695790" /translation="MIPVLYEAKETKFRTFGLGEIADAYEVRITRERNGNYSLYIKYP LDGVFASVFKEELKIKSDAGRRTKWQTFEINRVLRNSKDHIEIFARHISMRTQDIALK PFVSGSSIDAESALEVWRDNLVGDDTFDVKSDILTLGSFNWEVDKIGNARGALGGVAG SILDVYGGEYEFDNRTIILHKQMGRKAPTVLEYGRNIVSVEEERLLDGNYTSIYPYVR YTPQPKPHEEASGKPHIGEQEQPEEQLVTLPEFILDGQYLDLYAQRRIQMVDLSSHFN DDKKEPTVEEIRKLAQKYLKDNNVGAPKISIEVDYIDLSQTLDYQDFRVMEEVELCDI VPLYYPKFGITTETEKVVEIVYDVYTDSNHTIKLGTIGQSISKSLTGGVTQRIETLEN NQKVITNNQQQFELNLPKYLNDLNGTKIWYEKPDDNVEHKIGDFWFEKNGKYQRTWVW DGNQWVKIIDTEDLNPNQRVFDEAMAEIEKLKQHQQQIDKRNQRELEEFRDTLKNLAL PEEAIKKITEAIKVDDIPSIKQSFDDLKNKVSETSETARLNAEIIGTDGKTRYNKNLL VGDPSRTKSYDEDFIEIEANDGGFKRGETYTISFSQTCELLKKVAITLTQPHNKGLKL VLTSTKAKMEAQTFDLTKDIEVISVYPLSYRAVLTGDWYKSKQMDFNAAEVQDLALEM SYRDVVDSNNASLILDWSSNPDVIFDGNGGS" gene 172427..173101 /locus_tag="SEQ_0183" /db_xref="GeneID:7695791" CDS 172427..173101 /locus_tag="SEQ_0183" /codon_start=1 /transl_table=11 /product="collagen-like repeat phage protein" /protein_id="YP_002745601.1" /db_xref="GI:225869654" /db_xref="GeneID:7695791" /translation="MSETISAIVVHKSMTKNEWESSDIILPQGQLVYESDTGHSKFGD GKNRYADLIYQGGPPGPPGPQGPTGKTGDQGPPGPTGQRGETGPQGPPGPPGADGKMT FEQLTPEQKQQLKGDKGDRGPKGDIGPRGLTGPQGPKGEPGINGMDGPRGATGPRGPQ GPAGDPASIPDDVVRRGELAAYLLKSEYKAKGTGSGLSYKVVTQSEYDELYDYSDNEL ILVVEG" misc_feature 172757..172933 /locus_tag="SEQ_0183" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copies), score 2.4e-06" gene 173103..173717 /locus_tag="SEQ_0184" /db_xref="GeneID:7695792" CDS 173103..173717 /locus_tag="SEQ_0184" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745602.1" /db_xref="GI:225869655" /db_xref="GeneID:7695792" /translation="MAYKLYTKADAGDNLLLVAGHLPDDTKRLKIRRETLDVLSITHY QTYDMVHLKSTVKKAYSKNTVVTAVAAAASKPKVKPKQVLNFAKATKVYIGSTRVVAV YMGDRLLWSDKDSSGTKTVSVVGSLDIRQSQKMLYLYLIASDIADVKSKRIKSIAING VNLSSAAQINFEDSDYYCLVTIERVANIKEIKNIAQKNKLTLEF" gene 173728..175611 /locus_tag="SEQ_0185" /db_xref="GeneID:7695793" CDS 173728..175611 /locus_tag="SEQ_0185" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745603.1" /db_xref="GI:225869656" /db_xref="GeneID:7695793" /translation="MSRDPTLMIDESNLVIGKDGRMHYTFTAEDDNQKVRLKSNCLGT AHFNQLMIERGDQATDYVAPVVVEGSGNPTGLFKDLKELSLELTDTKNSNLWSKIKLT TNGMLREYHRDHISTEIVETADGIAKRISDDTGQKLALINETIKGIKREYQDADERLS ASYQAGIEGLKAQLANDKIGLQAEIKLSAQGLSQKYDDELRKLYAKITTTSSGTTEAY ENKLEGLRAEFTRSNQGMRTELESQISGLKAVQQSTAKQISQEIRDRTGAISRVQQDL ASYQRRLQDAEKNYSSLTQTVKGLQSTVSDPSGKIQSRFTQLQNQIDQRVTRDDVMSI INLSGDSIKLAIQKAGGIDAKMSAKEIISAINLNGYGVRISGERIALDGNTTVNGAFG AKLGEFIKLKADQIIGGTIDAAKIRVINLNASSIVGLDANFIRAKIEHTITSLLEGKV IRARNGAMMIDLNSAKMDFNSNATINFNNKDNALVRKDGTHTAFVHFSNATPKNYTGS ALYASIGITSSGDGVNSASSGRFCGARFFRYARGYEHTALVDQAEIYGDDIVFSDDFN IDRGFKMRPSLMPKMVDLNKMYQAILALGRCWLHANNTAWTFNSDTTSAIIREYNSYI NGL" misc_feature 173728..175566 /locus_tag="SEQ_0185" /inference="protein motif:PFAM:PF07902" /note="HMMPfam hit to PF07902, gp58-like protein, score 0" misc_feature 174700..174774 /locus_tag="SEQ_0185" /inference="protein motif:Prosite:PS00043" /note="PS00043 Bacterial regulatory proteins, gntR family signature." gene 175620..176057 /locus_tag="SEQ_0186" /db_xref="GeneID:7695794" CDS 175620..176057 /locus_tag="SEQ_0186" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745604.1" /db_xref="GI:225869657" /db_xref="GeneID:7695794" /translation="MDLTVQNKDLNTLYSVLDKIKVTNMRVNRGRAKLLAKVEAKLRE YAKDEVDIIDQYAAKNDKGKWIVDDKGNAKLADVTKVAELNELLDELANESIVIKGHE YSKRFIDFLEYLAEAEDEFTGAEIILIDNILEQYEANKKGAEA" misc_feature 175620..176048 /locus_tag="SEQ_0186" /inference="protein motif:PFAM:PF07761" /note="HMMPfam hit to PF07761, Protein of unknown function (DUF1617), score 2.9e-93" gene 176054..176665 /locus_tag="SEQ_0187" /db_xref="GeneID:7695795" CDS 176054..176665 /locus_tag="SEQ_0187" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745605.1" /db_xref="GI:225869658" /db_xref="GeneID:7695795" /translation="MRNWKIVGKYPQPNALGVIEGTHVIITGDDGASIPQTIKKDLSS TNDLDVIKMVLDEFKKSEYVEIAMGEAVQKVDDLEKLSQETAKTATTAQAAAGLAKVS AERTQKMINLQTIHMLTSVDKIEPDIYKGMLELIEPAKKGQYQEHDVFTVVDESHEEQ AGEGNLVFVYVNEAFEYDKQTLKDLESEDKVTVIKYADLVKGK" gene 176676..177047 /locus_tag="SEQ_0188" /db_xref="GeneID:7695796" CDS 176676..177047 /locus_tag="SEQ_0188" /codon_start=1 /transl_table=11 /product="phage holin" /protein_id="YP_002745606.1" /db_xref="GI:225869659" /db_xref="GeneID:7695796" /translation="MFIFLRQLIQTQDGKILFTLGAIAVAMMIDFLTGTVAAKINPNI DFRSKEGINGILRKICSIALMIFFIPLSILLPNDTGVAFLYVMYVGYLLFELKSILEN LNKMGIDVALFKQFIDMFSKK" sig_peptide 176676..176789 /locus_tag="SEQ_0188" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0188 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.986 between residues 38 and 39" misc_feature 176688..177044 /locus_tag="SEQ_0188" /inference="protein motif:PFAM:PF05105" /note="HMMPfam hit to PF05105, Holin family, score 4e-23" misc_feature join(176721..176789,176832..176900,176913..176972) /locus_tag="SEQ_0188" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0188 by TMHMM2.0 at aa 16-38, 53-75 and 80-99" gene 177057..177167 /locus_tag="SEQ_0189" /db_xref="GeneID:7695797" CDS 177057..177167 /locus_tag="SEQ_0189" /codon_start=1 /transl_table=11 /product="phage membrane protein" /protein_id="YP_002745607.1" /db_xref="GI:225869660" /db_xref="GeneID:7695797" /translation="MRAITRLAIVLAIAVLYVPLSVIALIVYPFLDKEDR" sig_peptide 177057..177128 /locus_tag="SEQ_0189" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0189 by SignalP 2.0 HMM (Signal peptide probability 0.799) with cleavage site probability 0.476 between residues 24 and 25" misc_feature 177075..177143 /locus_tag="SEQ_0189" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0189 by TMHMM2.0 at aa 7-29" gene 177164..178378 /locus_tag="SEQ_0190" /db_xref="GeneID:7695798" CDS 177164..178378 /locus_tag="SEQ_0190" /codon_start=1 /transl_table=11 /product="phage-associated cell wall hydrolase" /protein_id="YP_002745608.1" /db_xref="GI:225869661" /db_xref="GeneID:7695798" /translation="MTFLDDIKQGCLDGWTKYKILPSLTAAQAILESGWGKYAPHNAL FGIKADSSWTGKSFNTKTQEEYQPGVVTDIVDRFRAYDSWDESILDHGQFLVDNPRYK SVVGETDYKKACHAIKAAGYATASDYAELLIQLIEENNLQKWDAEALAKRKESQMISS QCREVIEFYINLANAGMGVDKDGAYGTQCADVPCYAAKHWFGVDLWGNAADLLDSASA QGWEVHRMPTEANPRAGAFFVMDAWFDGVNYGHTGLVYVDSDGYTMQTIEQNIDGNAD ALYVGGPARFNTRDFTGVIGWFYPPYQGDAVTQTVSTDPKTSDTIVETSQAGTFTLDV AEINIRRWPSLASEVVGSYKQGDTVSFDSEGYANGYYWISYVGGSGMRNYMAIGITDK DGNIISLWGKLN" misc_feature 177182..177586 /locus_tag="SEQ_0190" /inference="protein motif:PFAM:PF01832" /note="HMMPfam hit to PF01832, Mannosyl-glycoprotein endo-beta-N-ace, score 2.7e-19" misc_feature 177500..177532 /locus_tag="SEQ_0190" /inference="protein motif:Prosite:PS00639" /note="PS00639 Eukaryotic thiol (cysteine) proteases histidine active site." misc_feature 177671..178060 /locus_tag="SEQ_0190" /inference="protein motif:PFAM:PF05257" /note="HMMPfam hit to PF05257, CHAP domain, score 5.1e-25" misc_feature 178127..178324 /locus_tag="SEQ_0190" /inference="protein motif:PFAM:PF08460" /note="HMMPfam hit to PF08460, Bacterial SH3 domain, score 3.5e-09" gene complement(178456..179112) /locus_tag="SEQ_0191" /db_xref="GeneID:7695799" CDS complement(178456..179112) /locus_tag="SEQ_0191" /codon_start=1 /transl_table=11 /product="DNA-binding phage protein" /protein_id="YP_002745609.1" /db_xref="GI:225869662" /db_xref="GeneID:7695799" /translation="MNPSVKIKWLLTASGITTYKIGKKIGESTQFLDRYKNDPQKIGG MRLEKAEKLLDYIGTLKQEDVIRNTWNNQQILVQNSTEDEITDYFNSYPFAVKLNWIK PHKEMFIVNFDTVGDNTFKKYPYDLDNLYFFAGINREYMVRFADFLRACGTKLYFGGS RALYQVDGKKYQIIAKIKRPSEIGPALKVINVIETDVYREDLVPKISEEESILSPEEL" misc_feature complement(179002..179067) /locus_tag="SEQ_0191" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1031.000, SD 2.70 at aa 16-37, sequence ITTYKIGKKIGESTQFLDRYKN" gene complement(179129..179500) /locus_tag="SEQ_0192" /db_xref="GeneID:7695800" CDS complement(179129..179500) /locus_tag="SEQ_0192" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745610.1" /db_xref="GI:225869663" /db_xref="GeneID:7695800" /translation="MRYNKSEIMKNAWAMFNSCNWGAENFKFVSVEEKTFAACLKEAW AEEKEYVEEKIKESANAPKSEEAKAWDWACRKLNANKLQNVEATDKVAWVSEMAKEMW SSNIWAQAIKAVKLHIKLFAA" gene complement(179637..179993) /locus_tag="SEQ_0193" /db_xref="GeneID:7695801" CDS complement(179637..179993) /locus_tag="SEQ_0193" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745611.1" /db_xref="GI:225869664" /db_xref="GeneID:7695801" /translation="MTKTTVQRKKSIYINGALEKVYDECNNGSRNRKFSGRVTDIVER YDILMALTEIPELTPEQKMILGEAILGGFMDRNKIRYLPDAIADTDLDGCLALAKIVK DLDYTQRIKLIESINI" gene complement(179986..180132) /locus_tag="SEQ_0194" /db_xref="GeneID:7695802" CDS complement(179986..180132) /locus_tag="SEQ_0194" /codon_start=1 /transl_table=11 /product="phage membrane protein" /protein_id="YP_002745612.1" /db_xref="GI:225869665" /db_xref="GeneID:7695802" /translation="MTTKNMLLGLLTVSTIIFLVVSKSWDLKMLTAAIYIATLYLKAV IEDD" sig_peptide complement(179986..180057) /locus_tag="SEQ_0194" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0194 by SignalP 2.0 HMM (Signal peptide probability 0.985) with cleavage site probability 0.735 between residues 24 and 25" misc_feature complement(180067..180120) /locus_tag="SEQ_0194" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0194 by TMHMM2.0 at aa 5-22" gene complement(180129..181439) /locus_tag="SEQ_0195" /db_xref="GeneID:7695803" CDS complement(180129..181439) /locus_tag="SEQ_0195" /codon_start=1 /transl_table=11 /product="DNA-binding phage protein" /protein_id="YP_002745613.1" /db_xref="GI:225869666" /db_xref="GeneID:7695803" /translation="MVKCMGKREIREEINGKVYKTFSEIARDYSMYPSTVIIRYDRGL RGAELVAKRVIRNPKKNIKKPKKHIDKGFPLKIEGVVYNKVSDLADKYGINQATLRNG IAAGFTGDEIVKPVTKSIRGRSISINGIDYPSLSAAAKELGFDRMKLRRLYYSGYRDD ELLTKMKCERKMQRFTGAVIFGTEYTRIRDIALKFNIPETTLRGRYQNGARDEQLICN KKGEFTLPGRKLPAFIRFKEAQGEYIFQRTYKNETVTKGRKRFEDIMAISRLVDDYIK IFDRLPRDLGNDTIKIDYNTILGKQFGELFVKGIVLQDNKRKLWCVCSCGKEKYYLPP GVVEGKIKSCGHLEGLMLTQKNEELKEIQRNRDVALASNTTTGKKNISYNNSKKAFEF KITRGETSLFQRFKTLDQALEYKQKVLNYIKKHDGKLPSKEDIK" misc_feature complement(180819..180884) /locus_tag="SEQ_0195" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1139.000, SD 3.07 at aa 186-207, sequence TRIRDIALKFNIPETTLRGRYQ" misc_feature complement(181128..181193) /locus_tag="SEQ_0195" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1368.000, SD 3.85 at aa 83-104, sequence NKVSDLADKYGINQATLRNGIA" gene complement(181462..181848) /locus_tag="SEQ_0196" /db_xref="GeneID:7695804" CDS complement(181462..181848) /locus_tag="SEQ_0196" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745614.1" /db_xref="GI:225869667" /db_xref="GeneID:7695804" /translation="MNKEQLIKTIKETDYNFYAVRGWDEGYKIGEVLPESVKWDYERD MPTDIEVGGTCTTIPDSQHSDFKDYYETEEEMIEAIEKAVKINKSNYCYSKLYLVGSY NRNPYNAYEADENEAILADAVVLMEL" gene 181998..182216 /locus_tag="SEQ_0197" /db_xref="GeneID:7695805" CDS 181998..182216 /locus_tag="SEQ_0197" /codon_start=1 /transl_table=11 /product="phage protein" /protein_id="YP_002745615.1" /db_xref="GI:225869668" /db_xref="GeneID:7695805" /translation="MFMLIYDEFKQAVDDGYITGDTVAIVRKNGQIFDYVLPGEEVQP WEVVTEEKVENVLRELDWRSVKSRSKLL" repeat_region 182186..182206 /note="21mer direct repeat flanking prophage" repeat_region 182239..182256 /note="18mer direct repeat flanking prophage" gene 182462..182671 /locus_tag="SEQ_0199" /db_xref="GeneID:7695806" CDS 182462..182671 /locus_tag="SEQ_0199" /codon_start=1 /transl_table=11 /product="cold shock protein" /protein_id="YP_002745616.1" /db_xref="GI:225869669" /db_xref="GeneID:7695806" /translation="MTMAQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQSDGFRSLD EGQRVTFDVEDGQRGPQAVNITKLS" misc_feature 182468..182665 /locus_tag="SEQ_0199" /inference="protein motif:PFAM:PF00313" /note="HMMPfam hit to PF00313, 'Cold-shock' DNA-binding domain, score 1.5e-43" misc_feature 182510..182566 /locus_tag="SEQ_0199" /inference="protein motif:Prosite:PS00352" /note="PS00352 'Cold-shock' DNA-binding domain signature." gene 182841..183302 /locus_tag="SEQ_0200" /db_xref="GeneID:7695807" CDS 182841..183302 /locus_tag="SEQ_0200" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_002745617.1" /db_xref="GI:225869670" /db_xref="GeneID:7695807" /translation="MPTKNTSDSIEEYIKELLAQSGIAEIKRSMLADSFQVVPSQINY VIKTRFTESRGYEVESKRGGGGYIRIAKVHFSDKHHLIGTLIASIDDCLSEQAFTDSI QLLFDEQLLTEREGNIILAVASNDVLGHQAPEIRARMLYRLLQRIDRKGSN" misc_feature 182841..182960 /locus_tag="SEQ_0200" /inference="protein motif:Prosite:PS00430" /note="PS00430 TonB-dependent receptor proteins signature 1." misc_feature 182847..183287 /locus_tag="SEQ_0200" /inference="protein motif:PFAM:PF05848" /note="HMMPfam hit to PF05848, Firmicute transcriptional repressor of class, score 1e-99" misc_feature 182916..182981 /locus_tag="SEQ_0200" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1287.000, SD 3.57 at aa 26-47, sequence IKRSMLADSFQVVPSQINYVIK" gene 183302..185743 /locus_tag="SEQ_0201" /db_xref="GeneID:7695808" CDS 183302..185743 /locus_tag="SEQ_0201" /codon_start=1 /transl_table=11 /product="stress response-related Clp ATPase" /protein_id="YP_002745618.1" /db_xref="GI:225869671" /db_xref="GeneID:7695808" /translation="MMIYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLA AMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQFKPQSKALSEILAFAHAICQVIN EHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKE VSRMVQVLCRKTKNNPVLVGDAGVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMS VVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSGIDSTLDAANILKPA LSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVEDAYQILLGLKPSYEQY HNVTISDTAVHTAVKLARRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQ ALLDGDMSKVSALLVKEDKQPKLKPTAVTEDDMLHTLSKLSGIPLEKLTQADSKKYLN LEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTELAKALA ELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFD EVEKAHPDIFNILLQVLDDGMLTDSRGCKVDFSNTIIIMTSNLGATALRDDKTVGFGA KAIGHDHQAMEKRILEELKKAYRPEFINRIDEKVVFHSLTQENMRDVVKIMVKPLIAA LAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQS LKIGVSRGKLAFDIA" misc_feature 183344..183508 /locus_tag="SEQ_0201" /inference="protein motif:PFAM:PF02861" /note="HMMPfam hit to PF02861, Clp amino terminal domain, score 0.036" misc_feature 183491..183514 /locus_tag="SEQ_0201" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 183581..183769 /locus_tag="SEQ_0201" /inference="protein motif:PFAM:PF02861" /note="HMMPfam hit to PF02861, Clp amino terminal domain, score 0.27" misc_feature 183998..184582 /locus_tag="SEQ_0201" /inference="protein motif:PFAM:PF00004" /note="HMMPfam hit to PF00004, ATPase family associated with various cellul, score 5.3e-07" misc_feature 184013..184036 /locus_tag="SEQ_0201" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 184277..184315 /locus_tag="SEQ_0201" /inference="protein motif:Prosite:PS00870" /note="PS00870 Chaperonins clpA/B signature 1." misc_feature 184928..185446 /locus_tag="SEQ_0201" /inference="protein motif:PFAM:PF07724" /note="HMMPfam hit to PF07724, ATPase family associated with various cellul, score 1.4e-100" misc_feature 184940..185449 /locus_tag="SEQ_0201" /inference="protein motif:PFAM:PF07728" /note="HMMPfam hit to PF07728, ATPase family associated with various cellul, score 6.3e-05" misc_feature 184955..184978 /locus_tag="SEQ_0201" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 185033..185089 /locus_tag="SEQ_0201" /inference="protein motif:Prosite:PS00871" /note="PS00871 Chaperonins clpA/B signature 2." gene 186516..186950 /locus_tag="SEQ_0202" /db_xref="GeneID:7695809" CDS 186516..186950 /locus_tag="SEQ_0202" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745619.1" /db_xref="GI:225869672" /db_xref="GeneID:7695809" /translation="MKKSTKAFIALMILIGGLLMVFSLNGKITEEQQKKDLETSIAKL LVHDYEGVKTIKFQGWGHSRETGSWGTTVIINESNQMSFSFSSIKTLEDIGSTRYNPN TFKLVEKPETDSKPRIMDRMNEINATSLAGVTVIYSNNNQED" sig_peptide 186516..186608 /locus_tag="SEQ_0202" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0202 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.348 between residues 31 and 32" misc_feature 186534..186587 /locus_tag="SEQ_0202" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0202 by TMHMM2.0 at aa 7-24" gene 187171..187602 /locus_tag="SEQ_0203" /db_xref="GeneID:7695810" CDS 187171..187602 /locus_tag="SEQ_0203" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745620.1" /db_xref="GI:225869673" /db_xref="GeneID:7695810" /translation="MKKSTKAFIALMILIGGLLMVFSLNGKRTEEQQKKDLETSIAKL LVHDYEDVKEVKFTGWGRSRETGSWGTIVVINGENEIGFSFDGLSGLADISGRSYHPD TFKLVEKNSLEEMGPVKYRIKDIEKVSLEGVSITYSREKRS" sig_peptide 187171..187263 /locus_tag="SEQ_0203" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0203 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.396 between residues 31 and 32" misc_feature 187189..187242 /locus_tag="SEQ_0203" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0203 by TMHMM2.0 at aa 7-24" gene 187607..188893 /locus_tag="SEQ_0204" /db_xref="GeneID:7695811" CDS 187607..188893 /locus_tag="SEQ_0204" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745621.1" /db_xref="GI:225869674" /db_xref="GeneID:7695811" /translation="MISDSSYKKLSEQVYNVEPSKAKSNDAPIVLKGNRLIDDKTGKQ YRVLLVQDNNNDAHKINDNGMQAMAVAPIVQGDVDTSQVVIAYAGTNAADSRDLDTDW QLLIRGNQDDLVSGNLDGGNFVIAENQLRSAQKFYQQVKRKYPHSALTTTGHSLGAYL ALIVAAEHKIPATTFNGPDPVRGMSAEAITWVKANSNMYNNFRINFDGIGNFGAYFGT DDLAISRNVDAMLLSANPLYYHDLGAYRFNQKGQIVDRDGKLIGTQYLVSRAYLTVLA SKKRMSSYNQLKKHWQSTGKGISSSEELFLDAAQGMILGSSMAKVAREGADEALDHKT VADAKLMEVWSAIDFNAFHELPYYEVQALFASYGITYDRFVRDFQDYTQSKVSKLSAL ATDFENLNRDIQTVIDSKLETDQQLAGEFRAWQTEL" gene 188875..189267 /locus_tag="SEQ_0205" /db_xref="GeneID:7695812" CDS 188875..189267 /locus_tag="SEQ_0205" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745622.1" /db_xref="GI:225869675" /db_xref="GeneID:7695812" /translation="MADRIVEEVAIYRKLREMDDAEQDFLRQKKGYQKREDSLSERRH VLDDLINSEYQKMSVFLKRLDLSANAASDFFKELDRLKDQSNAEFHLQRAALEEERAQ STKTFRQEQDQRETELLDMRRAYANTNN" gene 189248..189538 /locus_tag="SEQ_0206" /db_xref="GeneID:7695813" CDS 189248..189538 /locus_tag="SEQ_0206" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745623.1" /db_xref="GI:225869676" /db_xref="GeneID:7695813" /translation="MLIPITEYYIEEEYAYALRLMRQMLERQRIATVARLANSQGEAI KKTFKDQIKATASQTKESLQIMEGQLDTAIKGAVRDQLEQVVKKKLPKYNKL" repeat_region complement(189701..191130) /note="ISSeq3" repeat_region 189710..189721 /note="perfect inverted repeat flanking IS element" gene complement(189734..190537) /locus_tag="SEQ_0207" /db_xref="GeneID:7695814" CDS complement(189734..190537) /locus_tag="SEQ_0207" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745624.1" /db_xref="GI:225869677" /db_xref="GeneID:7695814" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITDYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature complement(189749..190231) /locus_tag="SEQ_0207" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 1.1e-37" gene complement(190561..191076) /locus_tag="SEQ_0208" /db_xref="GeneID:7695815" CDS complement(190561..191076) /locus_tag="SEQ_0208" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745625.1" /db_xref="GI:225869678" /db_xref="GeneID:7695815" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature complement(190633..190914) /locus_tag="SEQ_0208" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature complement(190717..190755) /locus_tag="SEQ_0208" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" misc_feature complement(190957..191022) /locus_tag="SEQ_0208" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" repeat_region complement(191111..191122) /note="perfect inverted repeat flanking IS element" gene complement(191230..192855) /gene="groEL" /locus_tag="SEQ_0209" /db_xref="GeneID:7695816" CDS complement(191230..192855) /gene="groEL" /locus_tag="SEQ_0209" /codon_start=1 /transl_table=11 /product="60 kDa chaperonin" /protein_id="YP_002745626.1" /db_xref="GI:225869679" /db_xref="GeneID:7695816" /translation="MAKDIKFSADARESMVRGVDILADTVKVTLGPKGRNVVLEKAFG SPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREG LKNVTAGANPIGIRRGIEAATTTAVEALKAVAQPVSGKEAIAQVASVSSRSEKVGDYI SEAMERVGNDGVITIEESRGMETELEVVEGMQFDRGYLSQYMVTDNEKMVADLENPFI LITDKKISNIQDILPLLEEVLKTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKA PGFGDRRKAMLEDIAVLTGGTVITEDLGLELKDATMAALGQAAKVTVDKDNTVIVEGA GSSEAISNRVSLIKSQLETTTSEFDREKLQERLAKLAGGVAVIKVGAATETELKEMKL RIEDALNATRAAVEEGIVAGGGTALINVMDKVAALELDGDAATGRNIVLRALEEPVRQ IAYNAGYEGSVIIDKLKNSAAGIGFNAATGEWVDMIATGIIDPVKVTRSALQNAASVA GLILTTEAVVATKPEPAAPAMPQGMDPGMMGGF" misc_feature complement(191290..192792) /gene="groEL" /locus_tag="SEQ_0209" /inference="protein motif:PFAM:PF00118" /note="HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin family, score 4.5e-195" misc_feature complement(191614..191649) /gene="groEL" /locus_tag="SEQ_0209" /inference="protein motif:Prosite:PS00296" /note="PS00296 Chaperonins cpn60 signature." gene complement(192923..193210) /gene="groES" /locus_tag="SEQ_0210" /db_xref="GeneID:7695817" CDS complement(192923..193210) /gene="groES" /locus_tag="SEQ_0210" /codon_start=1 /transl_table=11 /product="10 kDa chaperonin" /protein_id="YP_002745627.1" /db_xref="GI:225869680" /db_xref="GeneID:7695817" /translation="MLKPLGDRVVLKFEAEKEQTVGGFVLAASHKEATKVGTVVAVSE TGIRTITGDIVPPSVAVGDKVLVEYGSGLEVKDGDQELVICREADILAVLA" misc_feature complement(192929..193210) /gene="groES" /locus_tag="SEQ_0210" /inference="protein motif:PFAM:PF00166" /note="HMMPfam hit to PF00166, Chaperonin 10 Kd subunit, score 2e-32" misc_feature complement(193133..193207) /gene="groES" /locus_tag="SEQ_0210" /inference="protein motif:Prosite:PS00681" /note="PS00681 Chaperonins cpn10 signature." repeat_region 193352..194788 /note="ISSeq5" repeat_region 193359..193371 /note="imperfect inverted repeat flanking IS element" gene 193405..193893 /locus_tag="SEQ_0211" /db_xref="GeneID:7695818" CDS 193405..193893 /locus_tag="SEQ_0211" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745628.1" /db_xref="GI:225869681" /db_xref="GeneID:7695818" /translation="MKLSYDDKLRIYELRKNGMSCSRIGQQYDIQVSNLKYMVKLMDR YGVEIVRKGKNKYYPPELKQEIIDKVLLEGQSQLSVSLEYALPNAGMLPNWIAQYKKN GYTILEKQRGRPTKMGRKPKKTWEEMTELERLQEELEYLRTENAYLKKLRELRLQDEA RE" misc_feature 193567..193848 /locus_tag="SEQ_0211" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00051" gene 193890..194756 /locus_tag="SEQ_0212" /db_xref="GeneID:7695819" CDS 193890..194756 /locus_tag="SEQ_0212" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745629.1" /db_xref="GI:225869682" /db_xref="GeneID:7695819" /translation="MRKAETIREMVQEGFRLNLLLEIAKMARSTYYYQVKQLDKSDKD EAINSEIKAIYEEHKGNYGYRRIHLELKNRGFIVNHKKVQRLMKEMRLAARIRRKRRY SSYKGETGKKADNLIQRQFEAAKPYEKCYTDVTEFALPNNDEKLYLAPVLDGYNSEII DLTLSRSPDLKQVQTMLEKAFPADSYNGTILHSDQGWQYQHQSYHHFLESKGIRPSMS RKGNSPDNGMMESFFGILKSEMFYGLETTYQSLNELEQAITDYIFYYNNKRIKAKLKG LSPVQYRTKSFH" misc_feature 194253..194741 /locus_tag="SEQ_0212" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 2.2e-37" repeat_region complement(194769..194780) /note="imperfect inverted repeat flanking IS element" gene complement(194883..195353) /locus_tag="SEQ_0213" /db_xref="GeneID:7695820" CDS complement(194883..195353) /locus_tag="SEQ_0213" /codon_start=1 /transl_table=11 /product="mutator protein" /protein_id="YP_002745630.1" /db_xref="GI:225869683" /db_xref="GeneID:7695820" /translation="MLEVIKNWVNICVKEGDKILLLNRQHDDFPGWIQPGGKVNTSES FFEAAVRELKEETGLTALNLQLKGISGFTNPDKPERYVYYDFLCEDFEGKLLTKSREG LPQWHAIADLDKLDMQEDIRQRLPLYWRQGSFERLHYWSDKEKKVVKTITHLYD" misc_feature complement(194961..195341) /locus_tag="SEQ_0213" /inference="protein motif:PFAM:PF00293" /note="HMMPfam hit to PF00293, NUDIX domain, score 1.1e-14" misc_feature complement(195186..195245) /locus_tag="SEQ_0213" /inference="protein motif:Prosite:PS00893" /note="PS00893 mutT domain signature." gene 195574..196424 /locus_tag="SEQ_0214" /pseudo /db_xref="GeneID:7695821" misc_feature 195574..196424 /locus_tag="SEQ_0214" /note="CDS contains a frameshift after codon 207. Similar to Streptococcus ratti MutR-like protein UniProt:Q3YB74 (EMBL:DQ145753 (292 aa) fasta scores: E()=7e-56, 56.842% id in 285 aa" /pseudo /db_xref="PSEUDO:CAW92240.1" gene 196727..197047 /locus_tag="SEQ_0216" /db_xref="GeneID:7695822" CDS 196727..197047 /locus_tag="SEQ_0216" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745631.1" /db_xref="GI:225869684" /db_xref="GeneID:7695822" /translation="MRANGLGRRKRMATLERHHKMLLLSMALGAASWLALGLISLPNL AGALGISTANANTTVNLLSAYSTVSSVVAIVGAVTGVGSIGAGIAATVLYLIKQKGKA AALW" sig_peptide 196727..196891 /locus_tag="SEQ_0216" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0216 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.953 between residues 55 and 56" misc_feature join(196787..196855,196946..197014) /locus_tag="SEQ_0216" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0216 by TMHMM2.0 at aa 21-43 and 74-96" gene 197061..198200 /locus_tag="SEQ_0217" /db_xref="GeneID:7695823" CDS 197061..198200 /locus_tag="SEQ_0217" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745632.1" /db_xref="GI:225869685" /db_xref="GeneID:7695823" /translation="MKHVFKYHKGDILGYLNIVGFTLLFYGSVIGMIMFRDYLTYDGA GSLISTFILVSGTYHSVKSTFPYEGKRHPTFILTPYYLFKHLLLSVTKVYAFQIRVVT IGIICLAIAFPEQLVWIALSVLAVFIYWLSLPLVAIFRVAGRLLNLLMIYGMYLNQEL LVIACLCLNVVILVLSVTINVHYPYQWLAVRARKEEKTITLLKLVINTITDHLALMVL FSIFCIAVTYFTQRLLLSFDYSSFSIPVFFLSASTYIALLEVMVGKNIKELELDRGLA VLQFLNRDISVYKAYRNSQFLLSAHILAVIHTGCAIGLLPFLLNGQAALFLSNLVMIP FIYFISFCYFVKSLKIVAGDLSVFRWVILVLYFILVVIAMVGSRL" misc_feature join(197097..197165,197337..197396,197415..197483, 197541..197609,197670..197738,197781..197849, 197949..198017,198027..198095,198129..198188) /locus_tag="SEQ_0217" /inference="protein motif:TMHMM 2.0" /note="9 transmembrane helices predicted for SEQ0217 by TMHMM2.0 at aa 13-35, 93-112, 119-141, 161-183, 204-226, 241-263, 297-319, 323-345 and 357-376" misc_feature 197979..198011 /locus_tag="SEQ_0217" /inference="protein motif:Prosite:PS00133" /note="PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature." gene 198197..198679 /locus_tag="SEQ_0218" /db_xref="GeneID:7695824" CDS 198197..198679 /locus_tag="SEQ_0218" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745633.1" /db_xref="GI:225869686" /db_xref="GeneID:7695824" /translation="MIMRKFLRYYISFIIFSIAIGILIGLLITSDTVILSKPERGWDF TLEVLKNNSNNFLSYIFLFFLSPALQLIDLVSVVIQITLGMRKSGFLITALGLFPHGL LEIPNFLFYQGLSQYMLWTVLTEKSMTSFLERERRYVRYYLISYYVLLIAGIMEGLLG" sig_peptide 198197..198304 /locus_tag="SEQ_0218" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0218 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.514 between residues 36 and 37" misc_feature join(198215..198283,198362..198430,198608..198661) /locus_tag="SEQ_0218" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0218 by TMHMM2.0 at aa 7-29, 56-78 and 138-155" gene 198676..199263 /locus_tag="SEQ_0219" /db_xref="GeneID:7695825" CDS 198676..199263 /locus_tag="SEQ_0219" /codon_start=1 /transl_table=11 /product="ABC transporter, ATP-binding protein" /protein_id="YP_002745634.1" /db_xref="GI:225869687" /db_xref="GeneID:7695825" /translation="MKIVNESKSFSNRKILNHISFDFSKGLYKVEGNNGSGKTTFLRL LAGLERFDSGHRLQHKGDILYLDTNAIGVVPLTIEDNLTLLWKTFNASPDEETLSVIN QFFGERLLDHYLTASVGTKAKVGLSLLFVKDWDYIFIDEALSTLDGFSLDMVAGRLLA LKEKATVFYVSHNLSHQQLLSESQVIYLNGKGEIY" misc_feature 198748..199245 /locus_tag="SEQ_0219" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 3.3e-08" misc_feature 198769..198792 /locus_tag="SEQ_0219" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 199260..199742 /locus_tag="SEQ_0220" /db_xref="GeneID:7695826" CDS 199260..199742 /locus_tag="SEQ_0220" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745635.1" /db_xref="GI:225869688" /db_xref="GeneID:7695826" /translation="MKGNPFNRNLSWLIAYVLLLSCYVFILVDGGFLKNSVQELEVLL GQTSLAIKLFLMVISIAFSIISLLVEYFLSKFLVLLFIEAGIVSLNDVLTAKSVTLVI HLSALLLKLSPSPLFQFVVNALGIVIMYGLSIKRQGNRTTALLFCLPFTLDILATLLL" misc_feature 199293..199325 /locus_tag="SEQ_0220" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature join(199296..199355,199398..199466,199485..199544, 199602..199661) /locus_tag="SEQ_0220" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0220 by TMHMM2.0 at aa 13-32, 47-69, 76-95 and 115-134" gene 199767..200282 /locus_tag="SEQ_0221" /db_xref="GeneID:7695827" CDS 199767..200282 /locus_tag="SEQ_0221" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745636.1" /db_xref="GI:225869689" /db_xref="GeneID:7695827" /translation="MKKILYLSVLLGTSILATLIKIYNTFFAKLKASSGHSTGNIEID ALLSESRLVLERQHAFTTNGINKLFVMMMSLMLLLALYYLIKKDLKAVYSYLLYLVLT LVHAIYSFFSLSPLAKLYSDDMLGATIQTGEKAKLIFSVVLFLLYLLIVVANNRVKSS VEPASSIGIDV" sig_peptide 199767..199868 /locus_tag="SEQ_0221" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0221 by SignalP 2.0 HMM (Signal peptide probability 0.964) with cleavage site probability 0.422 between residues 34 and 35" misc_feature join(199779..199847,199968..200021,200040..200108, 200151..200219) /locus_tag="SEQ_0221" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0221 by TMHMM2.0 at aa 5-27, 68-85, 92-114 and 129-151" gene 200916..202550 /locus_tag="SEQ_0222" /db_xref="GeneID:7697416" CDS 200916..202550 /locus_tag="SEQ_0222" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745637.1" /db_xref="GI:225869690" /db_xref="GeneID:7697416" /translation="MTRFFQKKQAKSLAIGFVSLFAVLIGYGAFHYSKASRINAYLQA RSSGSGQVLENIKEYLVWADTNEQLTNDQARYTSFKRYSKAELVSKRQQLQTATAADD MYVKSVGRKFLIFPDYRIAVKPVALTIKTNVPNVDILLNHKKIAVSQSEDFSTTIERL PAADYKASINGYYKDRKIKVSKAYDGKNHTLDLRVTFKTFTVTSNVRDGELYIDGERV ETLKAGQLQLEEYPVTEIAKAYIKKTFPDGELTSSKHSLAPVAEGSQLEINIDHLLTE EQAGQVLVAAFDQLLTYLNQGQDPAGLSTVFEQGANNAFYKGLKDSIKAKFQTDTRKA SRLSIPSILLSKLTQIGKQSYLVDFTAVYDFVYDKETDPEKGTSGNVRQDLTGKLTLK KSGDSYLVSQSGPKNITVASEKNQVKPSIFPEGLVGTWIGHRSDMTFTMILAKDGSIT TTIGNKNGNGSQTTKSAKITKVEEKGDGLFLYTVAPDADIAALVPGGGLGGVNVKYAF GVKWSGDVATIVVWQTANNAAFDYSKPMLGPDMKKQ" sig_peptide 200916..201026 /locus_tag="SEQ_0222" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0222 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.484 between residues 37 and 38" misc_feature 200952..201011 /locus_tag="SEQ_0222" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0222 by TMHMM2.0 at aa 13-32" gene complement(202691..203596) /locus_tag="SEQ_0223" /db_xref="GeneID:7696622" CDS complement(202691..203596) /locus_tag="SEQ_0223" /codon_start=1 /transl_table=11 /product="RNA pseudouridylate synthase" /protein_id="YP_002745638.1" /db_xref="GI:225869691" /db_xref="GeneID:7696622" /translation="MTGSMTTANKPEMGFQISFINPYQATTVKELLEDRLLIPRKIRH FLRIKKHVWVNDELINWQSPVKQGDHIKLQFDQEDYPDKGILMGKPGLVDCLYQDEHL IIVNKPEGMKTHGNEPTELALLNHVSAYTGKTCYVVHRLDMETSGAILFAKNPFILPI LNRLLEHRDIKRDYWALIEGQLEQQTVTYRDPIGRHRHDRRKRVVDSKHGQEAITHLA LLQAFDQTCLVNCRLETGRTHQIRVHLAHHKHPLIGDPLYSRQKAERLMLHAHQLTLR HPLAQEMIRVTAPSKSFKEGLQQLN" misc_feature complement(202856..203296) /locus_tag="SEQ_0223" /inference="protein motif:PFAM:PF00849" /note="HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 1.6e-47" misc_feature complement(203141..203185) /locus_tag="SEQ_0223" /inference="protein motif:Prosite:PS01129" /note="PS01129 Rlu family of pseudouridine synthase signature." gene complement(203568..203765) /locus_tag="SEQ_0224" /db_xref="GeneID:7696623" CDS complement(203568..203765) /locus_tag="SEQ_0224" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745639.1" /db_xref="GI:225869692" /db_xref="GeneID:7696623" /translation="MIMNKFQAFKETLSAESLKAVYDETRLEVASDEREGTEAFSVTL ATQMAINLIEKYHDWLNDNSK" gene 203994..205748 /locus_tag="SEQ_0225" /db_xref="GeneID:7696624" CDS 203994..205748 /locus_tag="SEQ_0225" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745640.1" /db_xref="GI:225869693" /db_xref="GeneID:7696624" /translation="MNKPLIKSCLLALLTLAGLTSMAAQADVNTYNQGRTYNDTPYYS AYHHYYDHTRDTADNGIDNWGRLTRYHYYRETYYQLEAERQQLVRTYLELKASYDDQV ALSSQRLQQYQSGWSDLQSRFEQLRKTNPVVGGDYRIVELEGNFQSYQTLLQQLSMAD FVSQYKDRLDTLTRLDTERARLIDTWWESDSNYSDLNTNLTLVNGYIKELNQALQELL KDHQGKMTSDLQTLGDRQAELARRLTDIESRPKRQATSQPRGSQTHWRSAPRADVALW NELRNEGDYASATTDNALPLQPYRADLTAVHDLEALQAQSDRAHRLRAKEIVFTLQRS NISRQGDIDLSGAITAFIKEKLLVTPNARGVSSGFRWQMQTYDNERLTITLMPQYYMT DDQYKEYYDHLKAWTAQHIQSTDTEVEKIDKIQDYIMTNYHYATGKVGGVTRTGISVQ TPYAFIKDKEAVCQAYAQMFKDMGRLAGLDVHYIQGYGDPVGGLSSLHAWNIVKVDGQ YYHIDLTWNDTIDSTNHNHTYTLRGNDFMSKTHLWNAAYAISDSDYAAYPRRSFLRYG TYATNYSRNTFYPGYSYA" sig_peptide 203994..204071 /locus_tag="SEQ_0225" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0225 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.949 between residues 26 and 27" gene 205889..206269 /locus_tag="SEQ_0226" /db_xref="GeneID:7696625" CDS 205889..206269 /locus_tag="SEQ_0226" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745641.1" /db_xref="GI:225869694" /db_xref="GeneID:7696625" /translation="MKSIRRYDVNEEWAHTGLVEAGDFYFLNYCVGNVGQDIEAQING AFDEMERRLGLVGLTLEVVVQMDCLFRDIWNVPVMEKIIKERFNGKYPARKFLQTAFA HQGGPDGLLFQVDGVAYSKHISVS" misc_feature 205928..206248 /locus_tag="SEQ_0226" /inference="protein motif:PFAM:PF01042" /note="HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 0.0017" gene 206307..208640 /locus_tag="SEQ_0227" /db_xref="GeneID:7696626" CDS 206307..208640 /locus_tag="SEQ_0227" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2a" /protein_id="YP_002745642.1" /db_xref="GI:225869695" /db_xref="GeneID:7696626" /translation="MTFLELLQKKFFPKKYQEKQALKERAAQHMADKEATTQATATAL ADQEAQAGQTERQSVLQRSKSYGVKRKNRPIWLQRLEAILPSQQGPIRRFLRRYHVGK ILLILMGTFVLLLGSYLFYLSKTAKVSDLQDALKATTVIYDRKGEYAGSLSGQKGTYV ELDAISDDLEKAVIATEDRTFYTNNGINFKRFLLAIVTAGRFGGGSTITQQLAKNAYL SQEQSIKRKAREFFLALELTKKYSKNDILTMYLNNSYFGNGIWGVEDASQKYFGTSAA NLTLDEAATLAGMLKGPEIYNPYYSIEKATNRRDTVLSAMVDAGKISKQQAQEAQAIG MGNRLADTYVGKTDDYQYPSYFDAVINEAISRYGISEKDIVNDGYKIYTELDQNYQAG MQTTFNEDSLFPVSEFDGSSAEAASVALDPKTGAVRGLVGRVNSTENQPFRSFNYATQ AKRSPASTIKPLVVYTPAVAAGWSLEHELPNSVQDFGGYQPHNYGNYESETIPMYQAL ANSYNIPAVSILDQLGVDKAFSYGEKFGLKMSETKKELGVALGSGVTTNPLEMAQAYA VFANGGVKHIAHLITRIENAKGKVIKTFTDKTKRVISQSVADKMTSMMLGTFSNGTAV NANVYGYTLAGKTGTTETDFNPDLSGDQWVIGYTPDVVISQWVGFNQTDEHHYLSDSS AGTASAIFSTQASYILPYTKGSQFKVDNAYAQNGISAVYGINETNTQAGIDSQSIIDS LRKSAEEASKSISEAVDQSGLREKAQSIWKSIVDYFR" misc_feature 206604..206672 /locus_tag="SEQ_0227" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0227 by TMHMM2.0 at aa 100-122" misc_feature 206721..207212 /locus_tag="SEQ_0227" /inference="protein motif:PFAM:PF00912" /note="HMMPfam hit to PF00912, Transglycosylase, score 3e-80" misc_feature 207324..207347 /locus_tag="SEQ_0227" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 207549..208379 /locus_tag="SEQ_0227" /inference="protein motif:PFAM:PF00905" /note="HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 1.5e-44" misc_feature 208194..208217 /locus_tag="SEQ_0227" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 208689..208841 /gene="rpmG" /locus_tag="SEQ_0228" /db_xref="GeneID:7696627" CDS 208689..208841 /gene="rpmG" /locus_tag="SEQ_0228" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L33" /protein_id="YP_002745643.1" /db_xref="GI:225869696" /db_xref="GeneID:7696627" /translation="MAQKKASLACVECGSRNYSIGISSTPRPTRLEVNKFCKYCKAYT LHKETR" misc_feature 208695..208838 /gene="rpmG" /locus_tag="SEQ_0228" /inference="protein motif:PFAM:PF00471" /note="HMMPfam hit to PF00471, Ribosomal protein L33, score 5.1e-12" gene 208853..209029 /gene="secE" /locus_tag="SEQ_0229" /db_xref="GeneID:7696628" CDS 208853..209029 /gene="secE" /locus_tag="SEQ_0229" /codon_start=1 /transl_table=11 /product="preprotein translocase SecE subunit" /protein_id="YP_002745644.1" /db_xref="GI:225869697" /db_xref="GeneID:7696628" /translation="MGFISGIFKLLRDTTWPDRKQRWKDFISVLEYTAFFTVIIFIFD QLLSKGILSLINLF" misc_feature 208928..208996 /gene="secE" /locus_tag="SEQ_0229" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0229 by TMHMM2.0 at aa 26-48" gene 209405..209965 /gene="nusG" /locus_tag="SEQ_0230" /db_xref="GeneID:7696629" CDS 209405..209965 /gene="nusG" /locus_tag="SEQ_0230" /codon_start=1 /transl_table=11 /product="transcription antitermination factor" /protein_id="YP_002745645.1" /db_xref="GI:225869698" /db_xref="GeneID:7696629" /translation="MKGSNMLDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLDNI LRVEIPTQTVNVEKNGQVKEVEENRFPGYVLVEMVMTDDAWFVVRNTPNVTGFVGSHG NRSKPTPLLEEEIRAILLSMGQTVDVFDTNIKEGDMVQIIDGAFIGQEGRVVEIENNK VKLMLNMFGSETLAEVELYQIAELSS" misc_feature 209438..209743 /gene="nusG" /locus_tag="SEQ_0230" /inference="protein motif:PFAM:PF02357" /note="HMMPfam hit to PF02357, Transcription termination factor nusG, score 8e-52" misc_feature 209801..209902 /gene="nusG" /locus_tag="SEQ_0230" /inference="protein motif:PFAM:PF00467" /note="HMMPfam hit to PF00467, KOW motif, score 1.4e-07" gene 211008..212525 /locus_tag="SEQ_0231" /db_xref="GeneID:7696630" CDS 211008..212525 /locus_tag="SEQ_0231" /codon_start=1 /transl_table=11 /product="Mga-like regulatory protein" /protein_id="YP_002745646.1" /db_xref="GI:225869699" /db_xref="GeneID:7696630" /translation="MSIENLFTKQQWRELELITLLSETKNPLYYKDACQMLDCSVLTL QSCITNSVFMEDLGKLFYKDSQFHIHYNHQSGLKEVYRRALLESPSLQLMSALFFDDF ASLDDLAEALFISLSTLKRLIRKTNLYLKEHFDIIISAKPIRVVGDEYNIRLFYIKYF SEAYTFSEWPFASLLNENHHEQFVQLMASLIEVKIDFAIFRQLKLLSAVNLIRYLKGF KIGKHKALSSLSLELLQDSQEMKKLSHLFVLKFSVPLDELVLSEMFSNYLDDDLVLEK SLQVDKVKEEVPGPQSLLSWIDLLSEMEGATGIVLPNKYEVARYLHATVILGVEDISE SFLIYDYKKDYLAFFKEHYTYVYFRFTDYVKRLFKDGDMELATNLLNNLVYSLLIAWE NFFLTMCELMKKPKLLIIERSHGSTGSFLKKYIGEFFEITIFDKLTIEALCLQHDYDV IITDTVIRGCEHADIFFFSRFVPTVIVAKLNHYLRKRMGSIFETKTTNKLGNIGY" misc_feature 211029..211202 /locus_tag="SEQ_0231" /inference="protein motif:PFAM:PF08280" /note="HMMPfam hit to PF08280, M protein trans-acting positive regulator (M, score 3.7e-13" misc_feature 211224..211487 /locus_tag="SEQ_0231" /inference="protein motif:PFAM:PF05043" /note="HMMPfam hit to PF05043, Mga helix-turn-helix domain, score 3.3e-29" misc_feature 211314..211379 /locus_tag="SEQ_0231" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1528.000, SD 4.39 at aa 103-124, sequence ASLDDLAEALFISLSTLKRLIR" misc_feature 211533..212189 /locus_tag="SEQ_0231" /inference="protein motif:PFAM:PF08270" /note="HMMPfam hit to PF08270, M protein trans-acting positive regulator (M, score 4.9e-33" gene 212726..213670 /locus_tag="SEQ_0232" /pseudo /db_xref="GeneID:7696631" misc_feature 212726..213670 /locus_tag="SEQ_0232" /note="gene remnant. CDS lacks an N-terminal signal sequence which is required for processing of this cell surface-anchored protein. Similar to the C-terminus of Streptococcus pyogenes serotype M18 Streptococcal protective antigen Spa UniProt:Q8NZA4 (EMBL:AE010108 (570 aa) fasta scores: E()=9.3e-13, 44.062% id in 320 aa" /pseudo misc_feature 213536..213658 /locus_tag="SEQ_0232" /inference="protein motif:PFAM:PF00746" /note="HMMPfam hit to PF00746, Gram positive anchor, score 1.1e-08" /pseudo misc_feature 213560..213577 /locus_tag="SEQ_0232" /inference="protein motif:Prosite:PS00343" /note="PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide." /pseudo misc_feature 213578..213646 /locus_tag="SEQ_0232" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0232 by TMHMM2.0 at aa 251-273" /pseudo gene 214259..216760 /gene="leuS" /locus_tag="SEQ_0234" /db_xref="GeneID:7696632" CDS 214259..216760 /gene="leuS" /locus_tag="SEQ_0234" /EC_number="6.1.1.4" /codon_start=1 /transl_table=11 /product="leucyl-tRNA synthetase" /protein_id="YP_002745647.1" /db_xref="GI:225869700" /db_xref="GeneID:7696632" /translation="MTFYNHKAIEPKWQAFWADNHTFKTGTDASKPKFYALDMFPYPS GAGLHVGHPEGYTATDILSRFKRAQGYNVLHPMGWDAFGLPAEQYAMDTGNDPAEFTA ENIANFKRQINALGFSYDWDREINTTDPSYYKWTQWIFTKLYEKGLAYEAEVPVNWVE ELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLADLEEVDWPESIKD MQRNWIGKSTGANVTFKVKDTDKDFTVFTTRPDTLFGATYAVLAPEHALVDSITTAEQ AQAVAEYKRQASLKSDLARTDLAKEKTGVWTGAYAINPVNGKEMPIWIADYVLASYGT GAIMAVPAHDERDWAFAKQFNLEIIPVLEGGNVDEAAYTEDGIHINSDFLDGLDKACA IAKMVAWLEETGVGHEKVSYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPEQDLPLV LPVTKDIRPSGTGESPLANLTDWLEVTREDGVKGRRETNTMPQWAGSSWYYLRYIDPH NDEQLADKDLLKQWLPVDIYIGGAEHAVLHLLYARFWHKVLYDLGVVPTKEPFQKLFN QGMILGTSYRDHRGALVATDKVDKRDGSFFHMETGEELEQAPAKMSKSLKNVVNPDDV VEQYGADTLRVYEMFMGPLDASIAWSEEGLEGARKFLDRVYRLITTKEIVAENSGALD KAYHETVKAVTEQIEGMKFNTAIAQLMIFVNAANKEDELYVAYAKGFVQLLAPFAPHL GEELWQILTASGQSISYVAWPTHDDSKLVENDVEIVVQIKGKVKAKLVVAKDLSREEL EKVALAHDKIQAEIAGKEVAKVIVVPNKLVNIVVK" misc_feature 214292..216208 /gene="leuS" /locus_tag="SEQ_0234" /inference="protein motif:PFAM:PF00133" /note="HMMPfam hit to PF00133, tRNA synthetases class I (I, L, M and V), score 1.1e-12" misc_feature 214385..214417 /gene="leuS" /locus_tag="SEQ_0234" /inference="protein motif:Prosite:PS00178" /note="PS00178 Aminoacyl-transfer RNA synthetases class-I signature." misc_feature 216302..216661 /gene="leuS" /locus_tag="SEQ_0234" /inference="protein motif:PFAM:PF08264" /note="HMMPfam hit to PF08264, Anticodon-binding domain, score 4.7e-07" gene 216947..217438 /locus_tag="SEQ_0235" /db_xref="GeneID:7696633" CDS 216947..217438 /locus_tag="SEQ_0235" /note="Similar to Streptococcus equi subname: full=se18.9 UniProt:Q2QJF9 (EMBL:DQ068464) (163 aa) fasta scores: E()=4.4e-51, 96.933% id in 163 aa" /codon_start=1 /transl_table=11 /product="anti-phagocytic factor H binding protein" /protein_id="YP_002745648.1" /db_xref="GI:225869701" /db_xref="GeneID:7696633" /translation="MKKLVLASAAALVLAGATVSTGTVSANSSRYNYTGWNQGGYSWK YLRLRNKNPYSRRTLTEDYSDQRKNEAKDSIKELSKLSDKEKKNFADRIDALTDTYAI SSILSEAKNKNNDYLEFDKEYEALFNSNKYKLEIEKIKDRVYFDEGYSARQGINDLKS LEN" sig_peptide 216947..217024 /locus_tag="SEQ_0235" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0235 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.989 between residues 26 and 27" misc_feature 216956..217024 /locus_tag="SEQ_0235" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0235 by TMHMM2.0 at aa 4-26" gene 217829..218200 /locus_tag="SEQ_0236" /pseudo /db_xref="GeneID:7696634" misc_feature 217829..218200 /locus_tag="SEQ_0236" /note="CDS lacks appropriate translational start site and therefore does not have an intact N-terminal signal sequence. Similar to Streptococcus pneumoniae hypothetical protein SPR1549 UniProt:Q8CYF3 (EMBL:AE008523 (130 aa) fasta scores: E()=2.6e-11, 38.400% id in 125 aa" /pseudo /db_xref="PSEUDO:CAW92276.1" gene 218271..219059 /locus_tag="SEQ_0237" /db_xref="GeneID:7696635" CDS 218271..219059 /locus_tag="SEQ_0237" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745649.1" /db_xref="GI:225869702" /db_xref="GeneID:7696635" /translation="MLQYRLFPFRYFYPLVPLLFLGFIYFDSLKHILFFDTSAVDLSG GIEVKKSLLLSMIRLDSVVFDFSFYQSFIYPLVMILVAYAYYYLKSRHLKYLIGRKSD YGKRCIFLKLQLSLYVLLSFYIVIFALTLVSWLNGVAHMNGNLMPYFDQNSILRFFGQ GATTFIAYYCLVKSLALFVHTYFVCFLVDYLQSFIKSSMLYLILMWALSPLLYSYLPP KYVLMTSLMSTSYSDADIPYLLSPYLGLVGVCIVLKLRKHHEII" misc_feature join(218289..218348,218466..218534,218595..218663, 218763..218831,218850..218918,218976..219029) /locus_tag="SEQ_0237" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0237 by TMHMM2.0 at aa 7-26, 66-88, 109-131, 165-187, 194-216 and 236-253" gene 219046..219663 /locus_tag="SEQ_0238" /db_xref="GeneID:7696636" CDS 219046..219663 /locus_tag="SEQ_0238" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745650.1" /db_xref="GI:225869703" /db_xref="GeneID:7696636" /translation="MKLSNLLVVGMKACLTGLLIHLLLIKANMTGERDFHNLVCYRLL MPFPVIEGETADFVKVITLLGLSFNSFYFTISFLADLAEGTKEIFRFHARSQLVFFNK LWRTSTIFYIKEWLLFIVLILGVLMTYYGAPYHIERLCYLMVSWLTIDICLIYVMIRY ASSAVVAMILFASLTLIRYFLFDVWWCLLLIVLVHMLYDNYYKES" misc_feature join(219052..219120,219223..219291,219370..219438, 219466..219534,219571..219639) /locus_tag="SEQ_0238" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0238 by TMHMM2.0 at aa 3-25, 60-82, 109-131, 141-163 and 176-198" gene 219665..220285 /locus_tag="SEQ_0239" /pseudo /db_xref="GeneID:7696637" misc_feature 219665..220285 /locus_tag="SEQ_0239" /note="CDS contains a nonsense mutation (ochre) after codon 128. Similar to Streptococcus pneumoniae ABC transporter, ATP-binding protein UniProt:Q97PD4 (EMBL:AE005672 (210 aa) fasta scores: E()=1.8e-26, 52.913% id in 206 aa" /pseudo /db_xref="PSEUDO:CAW92281.1" misc_feature 219764..219787 /locus_tag="SEQ_0239" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." /pseudo gene 220768..222201 /locus_tag="SEQ_0241" /db_xref="GeneID:7696638" CDS 220768..222201 /locus_tag="SEQ_0241" /EC_number="2.7.1.69" /codon_start=1 /transl_table=11 /product="sugar-specific permease, SgaT/UlaA family" /protein_id="YP_002745651.1" /db_xref="GI:225869704" /db_xref="GeneID:7696638" /translation="MKMLIAPLNWFSQDILQNPAFFVGLLVLIGYLLLKKPLHEVFAG FVKATVGYLILNVGAGGLVNTFRPILVALGKKFELKAAVIDPYFGLAAANTKLEEMGS ISVATTALLIGFGVNILLVALRKVTKVRTLFITGHIMVQQAATISVFVLLLIPQLQNA FGAWAVGIICGLYWAVSSNMTVEATQRLTGGGGFAIGHQQQFAIWFVDKVAPFFGKKE ENLDNLKLASFLTIFHDTVVASATLMLVFFGAILAVLGPDMMSNAELIGAGAFNPAKQ AFFMYILQTSLTFSVYLFILMQGVRMFVSELTNAFQGISSKLLPGSFPAVDVAASYGF GSSNAVLSGFTFGLIGQLITIALLVIFKNPILIITGFVPVFFDNAAIAVYADKRGGWK AAVALSFISGILQVALGAVAVGLLGLTGGYHGNIDLVLPWLPFGYLFKFLGIAGYVVV CVFLLAIPQLQFARAKDKEAYYRGEAQ" misc_feature 220780..222060 /locus_tag="SEQ_0241" /inference="protein motif:PFAM:PF04215" /note="HMMPfam hit to PF04215, sugar-specific permease, SgaT/UlaA, score 2.7e-250" misc_feature join(220810..220869,220888..220956,221068..221136, 221161..221229,221245..221298,221476..221538, 221596..221655,221782..221850,221860..221919, 221956..222024,222067..222135) /locus_tag="SEQ_0241" /inference="protein motif:TMHMM 2.0" /note="11 transmembrane helices predicted for SEQ0241 by TMHMM2.0 at aa 15-34, 41-63, 101-123, 132-154, 160-177, 237-257, 277-296, 339-361, 365-384, 397-419 and 434-456" gene 222316..222594 /locus_tag="SEQ_0242" /db_xref="GeneID:7696639" CDS 222316..222594 /locus_tag="SEQ_0242" /EC_number="2.7.1.69" /codon_start=1 /transl_table=11 /product="sugar phosphotransferase system (PTS), lactose/cellobiose-specific family, IIB component" /protein_id="YP_002745652.1" /db_xref="GI:225869705" /db_xref="GeneID:7696639" /translation="MVKVLTACGNGMGSSMVIKMKVENALRQLGVTDIQSASCSVGEA KGLASGYDIVVASNHLIHELDGRTKGHLVGLDNLMDDNEIKTKLQAVL" misc_feature 222322..222582 /locus_tag="SEQ_0242" /inference="protein motif:PFAM:PF02302" /note="HMMPfam hit to PF02302, PTS system, Lactose/Cellobiose specific IIB, score 1e-25" gene 222810..223295 /locus_tag="SEQ_0243" /db_xref="GeneID:7696640" CDS 222810..223295 /locus_tag="SEQ_0243" /EC_number="2.7.1.69" /codon_start=1 /transl_table=11 /product="sugar phosphotransferase system (PTS), IIA component" /protein_id="YP_002745653.1" /db_xref="GI:225869706" /db_xref="GeneID:7696640" /translation="MNLKKAFIENNSIRLGLSAASWQEAVKLAVQPLIDSGAVTSEYY DAIIASTEKYGPYYVLMPGMAMPHAEAGVGVKRNAFALITLTKPVTFSDGKEASVLLT LAATDPSIHTTVAIPQIVALFELEDAISRLVACHTPAEVLALVDESKNSPYLEGLDLD S" misc_feature 222825..223253 /locus_tag="SEQ_0243" /inference="protein motif:PFAM:PF00359" /note="HMMPfam hit to PF00359, Phosphoenolpyruvate-dependent sugar phosph, score 8.4e-34" gene 223393..224055 /gene="ulaD" /locus_tag="SEQ_0244" /db_xref="GeneID:7696641" CDS 223393..224055 /gene="ulaD" /locus_tag="SEQ_0244" /codon_start=1 /transl_table=11 /product="hexulose-6-phosphate synthase" /protein_id="YP_002745654.1" /db_xref="GI:225869707" /db_xref="GeneID:7696641" /translation="MTHIPKLQVALDHSDLQGAVRAAVAVGHEVDVIEAGTVCLLQVG SELVEVLRSLFPEKIIVADTKCADAGGTVAKNNAKRGADWMTCICCATIPTMAAALKA IKEERGERGEIQVELYGDWTYEQAQLWLDAGISQAIYHQSRDALLAGEVWGEKDLNKV KALIDMGFRVSVTGGLDINTLKLFEGVNVFTFIAGRGITEAEDPAAAARAFKDEIRRI WG" misc_feature 223405..224025 /gene="ulaD" /locus_tag="SEQ_0244" /inference="protein motif:PFAM:PF00215" /note="HMMPfam hit to PF00215, Orotidine 5'-phosphate decarboxylase / HUMP, score 1.8e-55" gene 224060..224923 /locus_tag="SEQ_0245" /db_xref="GeneID:7696642" CDS 224060..224923 /locus_tag="SEQ_0245" /codon_start=1 /transl_table=11 /product="hexulose-6-phosphate isomerase" /protein_id="YP_002745655.1" /db_xref="GI:225869708" /db_xref="GeneID:7696642" /translation="MARPIGIYEKATPKHFTWLERLQFAKVLGFDFVEMSVDESDARL ARLDWSKQERLDIVKAIYETGVRIPSICFSGHRRYPLGSSNPETEATSLELMKKCIVL AQDLGVRTIQLAGYDVYYEEKSPETRARFIKNLRQACTWAEEAQVILAIEIMDDPFIN SIEKYLAVEKEIDSPYLFVYPDTGNVSAWHNDLWSEFYNGHRSIAALHLKDTYAVTET SKGQFRDVPFGQGCVDWEAMFDVLKKTHYHGPFLIEMWSENCETVEETRAAIKEAQDF LYPLIEKAGLS" misc_feature 224123..224758 /locus_tag="SEQ_0245" /inference="protein motif:PFAM:PF01261" /note="HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 4e-45" gene 224923..225639 /gene="araD" /locus_tag="SEQ_0246" /db_xref="GeneID:7696643" CDS 224923..225639 /gene="araD" /locus_tag="SEQ_0246" /EC_number="5.1.3.4" /codon_start=1 /transl_table=11 /product="L-ribulose 5-phosphate 4-epimerase" /protein_id="YP_002745656.1" /db_xref="GI:225869709" /db_xref="GeneID:7696643" /translation="MAKRLQEMRERVCAANKALPLHGLVKFTWGNVSEVCRELGRIVI KPSGVDYDQLTPENMVVTDLDGTIVEGELNPSSDLPTHVQLYKAWPEVGGIVHTHSTE AVGWAQAGRDIPFYGTTHADYFYGPIPCARSLTADEVNGAYEKETGTVILEEFASRGL DPMAVPGIVVRNHGPFTWGKTPELAVYHSVVLEEVAKMNRLTEQINPRVEPAPTYIMD KHYLRKHGPNAYYGQKGSRH" misc_feature 224950..225582 /gene="araD" /locus_tag="SEQ_0246" /inference="protein motif:PFAM:PF00596" /note="HMMPfam hit to PF00596, Class II Aldolase and Adducin N-terminal, score 7.1e-96" misc_feature 225442..225465 /gene="araD" /locus_tag="SEQ_0246" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 225943..227589 /locus_tag="SEQ_0247" /db_xref="GeneID:7696644" CDS 225943..227589 /locus_tag="SEQ_0247" /codon_start=1 /transl_table=11 /product="transcriptional antiterminator" /protein_id="YP_002745657.1" /db_xref="GI:225869710" /db_xref="GeneID:7696644" /translation="MIILDKKSYDLLSYLIRLKEAETVMAISAALGQSRRKIYYHLDK INEALPSHVAQIVSYPRVGILLNSEQKAACQQLLNEVADYHYVMKGDERRSLSAIYIA VATERVTLDKLMMINDVSRNTILNDLAELREELSSYNNKIQLHATKAKGYYFDCHPMA LIQYLYKVLAGVYQGGNSSFIELFDHKLSETQGLSAYFSKEVLDYFHEYLFLSQASLG KTINIQDSQFMLQILPFILLSYRNMQLHSETKTALKRDFNLIWKRKEYQIAKALASEL YHNFKLHLDDIEVGMIAMLMLSFRKDQDHHVESQDYEQMRATIGDFIDQLELRYQLHF THKKDLLRQLTRHCKALVYRKAYGIFSINPLTDHIKEKYEELFAMAQSCAVILEQAWQ IRLTDDDVAYLTIHLGGELRHSHADWDKTKLVIVSDDGIGIQKLLLKQCQRYLPNCQI EAVFTTEQYQSVFDLMSVDIVVSTTDALEALVPVLIVNPILSDDDIIRLIRFSKQGRL SDSSRFSLELEKAIETIVKDDADRYALKTKIEKLIHHELL" misc_feature 226222..226401 /locus_tag="SEQ_0247" /inference="protein motif:PFAM:PF08279" /note="HMMPfam hit to PF08279, HTH domain, score 0.001" misc_feature 226549..226839 /locus_tag="SEQ_0247" /inference="protein motif:PFAM:PF00874" /note="HMMPfam hit to PF00874, PRD domain, score 9.6e-15" misc_feature 226900..227172 /locus_tag="SEQ_0247" /inference="protein motif:PFAM:PF00874" /note="HMMPfam hit to PF00874, PRD domain, score 5.2e-16" gene 227784..228875 /locus_tag="SEQ_0248" /db_xref="GeneID:7696645" CDS 227784..228875 /locus_tag="SEQ_0248" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745658.1" /db_xref="GI:225869711" /db_xref="GeneID:7696645" /translation="MAKVQDITRESWILSTFPEWGTWLNEEIEEEVVPEGNFSMWWLG NCGIWIKTPGGANVVMDLWSNRGKATKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVI DPFMINELDYYLVSHYHSDHIDINTAAAIINNPKLDHVKFVGPYECGKIWESWGVPKD RIIVVKPGDSFAFKDIKVTAVESFDRTCIVTLPVAGAEENGGELAGLPVTDEELARKT VNYIFETPGGTIYHGADSHFSNYFAKHGRDYDIDVVLNNYGENPIGIQDKMTSVDLLR MAENLRAKVVIPVHYDIWSNFMASTDEILELWKMRKERLQYQFHPFIWEVGGKYTYPQ DQDRIEYHHPRGFDDCFLEDSNIQFKALL" gene 228883..229182 /locus_tag="SEQ_0249" /db_xref="GeneID:7696646" CDS 228883..229182 /locus_tag="SEQ_0249" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745659.1" /db_xref="GI:225869712" /db_xref="GeneID:7696646" /translation="MPHLALLGGAFDLSRVLLDMTSSYGQSKLTLCLADLIAIGSLLG SLSIGLVAGQESDRSIKSARGGCWVSSQGAKCQKGLLAVVCSGLLSAWLTSDITA" gene 229381..230577 /locus_tag="SEQ_0250" /db_xref="GeneID:7696647" CDS 229381..230577 /locus_tag="SEQ_0250" /codon_start=1 /transl_table=11 /product="glycine betaine transport ATP-binding protein" /protein_id="YP_002745660.1" /db_xref="GI:225869713" /db_xref="GeneID:7696647" /translation="MGTILEVRHLSKLFGKKQKAALEMIKAGKSKSAIFKKTGVTVGV YDASFEVQEGEIFVIMGLSGSGKSTLVRMLNRLIEPSAGSILLEGRDISKLSVDQLRE VRRHDMNMVFQSFALFPHKTILENTEFGLELRGVPKQERREIAKRALDQSGLLEVRDQ YPDQLSGGMQQRVGLARALANSPKILLMDEAFSALDPLIRRDMQDELLELQETMKQTI IFISHDLNEALRIGDRIALMKDGQIMQIGTGEDILTNPANDFVREFVEDVDRSKVLTA QHIMIKPITTTVDLDGPQVALNRMHNEEVSMLMATNRRRQLIGSLTADGAIEARQKKL PLSEVIDRNVRTVSKDTVITDILPLIYDSSAPIAVTDEQHRLLGVIIRGRVLEALANI PDDDLN" misc_feature 229540..230103 /locus_tag="SEQ_0250" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 4e-64" misc_feature 229561..229584 /locus_tag="SEQ_0250" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 229873..229917 /locus_tag="SEQ_0250" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." misc_feature 230212..230550 /locus_tag="SEQ_0250" /inference="protein motif:PFAM:PF00571" /note="HMMPfam hit to PF00571, CBS domain pair, score 8.6e-13" gene 230595..232325 /locus_tag="SEQ_0251" /db_xref="GeneID:7696648" CDS 230595..232325 /locus_tag="SEQ_0251" /codon_start=1 /transl_table=11 /product="glycine-betaine binding permease protein" /protein_id="YP_002745661.1" /db_xref="GI:225869714" /db_xref="GeneID:7696648" /translation="MENLLQTTLPVAQLVEQLTEWLTKTFSGFFDLLQLVGNALMDWI TQTLLFINPLLFMLLVTCAMFFLARKKWPLPIFTLLGLLFVYNQGLWAELINTFTLVL VASLISVLLGIPLGIWMAKNKIVHQVINPMLDLMQTMPAFVYLIPAVAFFGIGMVPGV FASVIFALPPTVRFTNLALRHIPTELVEASDAFGSTPKQKLLKVELPLAKHTMMAGVN QTMMLALSMVVTGSMIGAPGLGREVLSALQHADIGRGFVSGLALVILAIILDRMTQHF NGKPQERTQTGKTKKWLGLAALAVFLLSALGRGFAAMLSSSADKGQKVTIAYVQWDSE VASTHVIAQVLRDEGYQVTLTPLDNAVMWQTIANGDADFSTSAWLPVTHQQQYQKYQD KLDNLGPNLKGTKLGLAVPAYMSDVNSIEELSDQANQQIIGIEPGAGIMTAADKTQKA YSNLADWELVAASTGAMTTSLDQAVKKKEPIVVTAWSPHWMFAKYDLKYLADPKKTFG SKENINTIARRGLKADLPAVHRIVDHFHWEKEDMEAVMLDINQGMTPEAAAKKWVASH ADKVAKWTQS" misc_feature join(230736..230795,230808..230867,230886..230954, 231024..231092,231237..231305,231348..231401, 231468..231536) /locus_tag="SEQ_0251" /inference="protein motif:TMHMM 2.0" /note="7 transmembrane helices predicted for SEQ0251 by TMHMM2.0 at aa 48-67, 72-91, 98-120, 144-166, 215-237, 252-269 and 292-314" misc_feature 230874..231440 /locus_tag="SEQ_0251" /inference="protein motif:PFAM:PF00528" /note="HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.4e-31" misc_feature 231129..231215 /locus_tag="SEQ_0251" /inference="protein motif:Prosite:PS00402" /note="PS00402 Binding-protein-dependent transport systems inner membrane comp. sign." misc_feature 231558..232289 /locus_tag="SEQ_0251" /inference="protein motif:PFAM:PF04069" /note="HMMPfam hit to PF04069, Substrate binding domain of ABC-type gly, score 3e-93" gene 232731..235391 /locus_tag="SEQ_0252" /db_xref="GeneID:7696649" CDS 232731..235391 /locus_tag="SEQ_0252" /EC_number="2.7.7.7" /codon_start=1 /transl_table=11 /product="DNA polymerase I" /protein_id="YP_002745662.1" /db_xref="GI:225869715" /db_xref="GeneID:7696649" /translation="MWYNKGMENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHT NAIYGFHLMLDHMMKRVQPTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPY IRDMLGALGIAFYELEHYEADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDANTV VEISKKGVAEFEEFTPAYLMDKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKL LHEYGSLEGIYEHIDSFKPSKMKENLLHDKEQAFLSKTLATINTSAPITIGLEDIVYQ GPDLDRLSQFYDEMDFVQLKNALASQLPQEPVAEIAYQEVTDIRADMFSDDTVFYFEA LRDNYHREELIGFAWGNQGQIYASADISLLTTKLFKKVLEQPIATYDFKRSKVLLSHL GLDLPAASYDARLANYLLSTVEDNEMATLARLYTTISLDTDEVVYGKGVKRAVPDKAV LLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLAKMEIEGIAVNQDSL QEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYST AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQDLTQTGR LSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIA AFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGIPRK QAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNVRSFAE RTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAAVKA LVKETMESAVSLAVPLRVDESAGKSWYEAK" misc_feature 232761..233279 /locus_tag="SEQ_0252" /inference="protein motif:PFAM:PF02739" /note="HMMPfam hit to PF02739, 5'-3' exonuclease, N-terminal resolvase-, score 1.7e-93" misc_feature 233283..233585 /locus_tag="SEQ_0252" /inference="protein motif:PFAM:PF01367" /note="HMMPfam hit to PF01367, 5'-3' exonuclease, C-terminal SAM fold, score 5.8e-56" misc_feature 233667..234122 /locus_tag="SEQ_0252" /inference="protein motif:PFAM:PF01612" /note="HMMPfam hit to PF01612, 3'-5' exonuclease, score 0.011" misc_feature 234237..235385 /locus_tag="SEQ_0252" /inference="protein motif:PFAM:PF00476" /note="HMMPfam hit to PF00476, DNA polymerase family A, score 6.7e-212" misc_feature 234864..234923 /locus_tag="SEQ_0252" /inference="protein motif:Prosite:PS00447" /note="PS00447 DNA polymerase family A signature." misc_feature 235554..235586 /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 235631..236083 /locus_tag="SEQ_0254" /db_xref="GeneID:7696650" CDS 235631..236083 /locus_tag="SEQ_0254" /codon_start=1 /transl_table=11 /product="CoA binding protein" /protein_id="YP_002745663.1" /db_xref="GI:225869716" /db_xref="GeneID:7696650" /translation="MIDTFQNPSDETITSYLESSKTIAVVGLSDRQTTAAYDVARFMQ AKGYRIVPVNPRLAGQSVLGEVVYASLAAIPFKVDIANVFRRSEYLPQVAQDFLACQG QVFWAQLGLYSQEAEELLRSAGKADIVMNRCIKIDYLRLISKQDQDSC" misc_feature 235676..235960 /locus_tag="SEQ_0254" /inference="protein motif:PFAM:PF02629" /note="HMMPfam hit to PF02629, CoA binding domain, score 1.1e-06" gene 236120..236593 /locus_tag="SEQ_0255" /db_xref="GeneID:7696651" CDS 236120..236593 /locus_tag="SEQ_0255" /codon_start=1 /transl_table=11 /product="ferric uptake regulator family protein" /protein_id="YP_002745664.1" /db_xref="GI:225869717" /db_xref="GeneID:7696651" /translation="MDIHSHQQALNAYENVLEHLRDKHIRITETRKAIISYMIQSTEH PSADKIYRDLQPQYPNMSLATVYNNLKVLVDEGFVSELKISNDLTTYYDFMGHQHVNV VCEVCGTIADFMDVDVMDIAKEAHQQTGYKVTRIPVIAYGVCPSCQTKQGKDTDY" misc_feature 236183..236542 /locus_tag="SEQ_0255" /inference="protein motif:PFAM:PF01475" /note="HMMPfam hit to PF01475, Ferric uptake regulator family, score 6.8e-50" gene 236953..238779 /locus_tag="SEQ_0256" /db_xref="GeneID:7696652" CDS 236953..238779 /locus_tag="SEQ_0256" /codon_start=1 /transl_table=11 /product="cell surface-anchored protein" /protein_id="YP_002745665.1" /db_xref="GI:225869718" /db_xref="GeneID:7696652" /translation="MKKFTKRCLKGCGLVGLVFSTGLVALSDNIDSALTVGAETTTAS AFENNGTGQHLNWHIDIPQEYTVELGEPITISDLMSQITVTRKGSNGTVNDGDTFDFI SNGDGSRGIDTPGVKIWFDFYNAAGTSFLTDEMLASPTYAVPGGSYTIKAWVFYGKND TKKLFTFKLKNSNSNKTELRKSLEEAKLKLSQPEGTYSDESLQALQSAVTLGKTYLNS DPDQNTVDQSVTTIDSAITSLVNLNALNEAINQATPFITDGKEYPKEAYDGLVQKLAA AAKLQNSFGPSQGDVDKAATDLTQALTTLKTAVAHEALDQALAKLLELYRENPNLALT SESLKELYNKAIEAAGTFYRTVNKDKERKDISLYELERYTTETNSVVDTILKVKAAIA EEGKAKLRSALDQLNALIGENLDLSPYTAASAQAYTDQLAKAKEVAAAGETAYAQETE PTAITNSLVKVLNAKKSLSDAKAALVAKPVDPVDPVDPVDPVDPVDPVDPVDPVDPVD PVDPVDPVDPVDPVDPVDPVDPVDPIDPADPVKPSDPEVKPEPKPESKPEAKKEDKKA ADKQQVLPATADTANPFFTAAALAVIACAGQLAIVSRRKESN" sig_peptide 236953..237066 /locus_tag="SEQ_0256" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0256 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.726 between residues 38 and 39" misc_feature 238645..238767 /locus_tag="SEQ_0256" /inference="protein motif:PFAM:PF00746" /note="HMMPfam hit to PF00746, Gram positive anchor, score 1.8e-07" misc_feature 238702..238734 /locus_tag="SEQ_0256" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 238914..242876 /locus_tag="SEQ_0257" /db_xref="GeneID:7696653" CDS 238914..242876 /locus_tag="SEQ_0257" /codon_start=1 /transl_table=11 /product="carbohydrate-binding exported protein" /protein_id="YP_002745666.1" /db_xref="GI:225869719" /db_xref="GeneID:7696653" /translation="MFKPYTDGKQRFAIKTFKTGAASVLVATLFLTLGLTTVSADEQQ VTASAAIATTLEAQEAVDQQAADQSATAAQDTAAEGSSETLPVVIGTATTETTDSKSQ VAAAEQATEASAEETTKQEQTEVSQAVETTNKTEAKDYIYLSDETRVNPSKVGHGSFL QDKNPAGGTITLVVDGEVLAFDKGIAVHAPSQLYYDVEQYSNEYTRLSAYLGVDYSRR GKDDGVSFNIYKSKDGKSWESLVTTGTVTGTSEAVYVDLDITGAKYVKLIANSLKNNG NDHSVYADLRLLKTDYDLSSEVSYDRLKTTEEYDALLSKNSVTDNYDNPDNLALVLER EFVNRVGYHTIQSAVKKNEKVKVALDWLLSDEDALSLFLEAGSMFNGSTLKTLNALGD LYATNKADLEDKGNGYVYKKMMLATAVAYCKEIKSFVVNYGGTYLASDPVLKYQAFKE LYRDNEFLRKEEFANYNMELVRAVMDAKIDDEEILWLHHYAEQKYGDKVASYTSGYSY TKYKNIGYGGADMRSADNQAQWTEKYQLVGTLNDDAFNVTYDNRHRIWMLMEKGAVCW GLSNLGVAVNEVFGIPAVNIYQNDHEAYLVYRQDDQGNGIWDIRDNVYGNRWAISYSR WGTTTATEARLLLGWGLKSYNDIHKNASYMLLAQAALNQYDKFKESLYYNLIANVYEA GSDQQIEAYSKALDVLELNLDTYDGLIEAYAKNGQKTDQDWLDLGKRVIAAYTYYPQV MVEAIKRITPNISDQAAKAELDLLSYNALIAAKTATDKEVLQSNEVRIIANYILTGNP IETASFSFDDKTLRLHENYQDTDLTVRYSIDNGKTWLETKDKVIVFSDDLLAKLNIED GILVGFDAVSATYRINLTKAAAPTNSSLYGNDLENRLIGAIEHLEVSLDNGQSWQAYD GTERFNDTVTVLARYRAHGTSLASDSVTYTFTADSTDPTMHYISIDDIQAVTYANEQS GRSGKHMVDGRDMATQWHTLFNQVTEDKSYTVEFKDDKNFSAIAYLPGGVNGMIHSAK VDISSDGKVWTTVVDSTDWKQNTELKTVSFTPTTGRFVRITALDTYGKSSGQANKFVS GSAYRFFEDISSPIEAPVRNDILALKDSILTILKETNTATKEIESFAITNSGLTAATT EKNQAIQGKILETIKDLGLTGTYYITLENTGTYDDLADLLNHQLVITYQDKAAGPLYV LAMNSLSSGDEALDAEYSLDLIKSALKSALESENIDLKTFEGLSISSQLPAAKTAVNT ALMEKLQQLLPGDYFIDLAGLPTAASIDELLDSQLFIYYRESHWTTAYALDRGAFQQL" sig_peptide 238914..239033 /locus_tag="SEQ_0257" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0257 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.604 between residues 40 and 41" misc_feature 238929..239009 /locus_tag="SEQ_0257" /inference="protein motif:PFAM:PF04650" /note="HMMPfam hit to PF04650, YSIRK type signal peptide, score 2.5e-05" misc_feature 238974..239033 /locus_tag="SEQ_0257" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0257 by TMHMM2.0 at aa 21-40" misc_feature 239316..239780 /locus_tag="SEQ_0257" /inference="protein motif:PFAM:PF08305" /note="HMMPfam hit to PF08305, NPCBM domain, score 1.2e-16" misc_feature 241386..241421 /locus_tag="SEQ_0257" /inference="protein motif:PFAM:PF02012" /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.63" misc_feature 241614..241649 /locus_tag="SEQ_0257" /inference="protein motif:PFAM:PF02012" /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score 2.3" misc_feature 241794..242171 /locus_tag="SEQ_0257" /inference="protein motif:PFAM:PF00754" /note="HMMPfam hit to PF00754, F5/8 type C domain, score 1.7e-12" misc_feature 242127..242150 /locus_tag="SEQ_0257" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene complement(243072..243917) /locus_tag="SEQ_0258" /db_xref="GeneID:7696654" CDS complement(243072..243917) /locus_tag="SEQ_0258" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745667.1" /db_xref="GI:225869720" /db_xref="GeneID:7696654" /translation="MSIREIKREARQTLKGLKGKYLLFLVPIILSIFYSGIEVHQTYV TTQGIEVSVGASYFPLIVLIMLTVFTLSAAYTMLDVIRYYRREVSFSEATIAFSGNLF GKVLVLLIIKGLLFILWSLIWIVGLVILTISSAALLTSYNTGAAVMTPIIFMVIGFVI FIIGLIVYMNRYCAYSMAEYILYDKVKEGTYMGAITAIEESKDMISGYKGKYFLLHLS FIGWFILVILSFGLIYIYVLPYYTTADVTFYHHLKHIHDETELPIDAERLTITGSKEA PSAIS" misc_feature complement(243150..243917) /locus_tag="SEQ_0258" /inference="protein motif:PFAM:PF06161" /note="HMMPfam hit to PF06161, Protein of unknown function (DUF975), score 4e-79" misc_feature complement(join(243213..243281,243414..243482, 243510..243578,243693..243761,243789..243857)) /locus_tag="SEQ_0258" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0258 by TMHMM2.0 at aa 28-50, 60-82, 121-143, 153-175 and 220-242" gene 244322..245464 /gene="tgt" /locus_tag="SEQ_0259" /db_xref="GeneID:7696655" CDS 244322..245464 /gene="tgt" /locus_tag="SEQ_0259" /EC_number="2.4.2.29" /codon_start=1 /transl_table=11 /product="queuine tRNA-ribosyltransferase" /protein_id="YP_002745668.1" /db_xref="GI:225869721" /db_xref="GeneID:7696655" /translation="MTNYPITYRLIKKEKHTGARLGEIITPHGTFPTPMFMPVGTQAT VKTQSPEELKEIGSGIILSNTYHLWLRPGDELIARAGGLHKFMNWDQAILTDSGGFQV YSLADSRNITEEGVTFKNHLNGSKMFLSPEKAISIQNNLGSDIMMSFDECPQFYQPYD YVKKSIERTSRWAERGLKAHRRPHDQGLFGIVQGAGFEDLRRQSAADLVSMDFPGYSI GGLAVGESHAEMNAVLDFTTPLLPENKPRYLMGVGAPDSLIDGVIRGVDMFDCVLPTR IARNGTCMTSEGRLVVKNAKFAEDFTPLDHHCDCYTCQHYTRAYLRHLLKADETFGMR LTSYHNLYFLVNLMKQVRQAILDDNLLEFRQDFLERYGYNSSSRNF" misc_feature 244715..245428 /gene="tgt" /locus_tag="SEQ_0259" /inference="protein motif:PFAM:PF01702" /note="HMMPfam hit to PF01702, Queuine tRNA-ribosyltransferase, score 4.8e-145" gene 245894..247138 /locus_tag="SEQ_0260" /db_xref="GeneID:7696656" CDS 245894..247138 /locus_tag="SEQ_0260" /codon_start=1 /transl_table=11 /product="collagen-like cell surface-anchored protein SclH" /protein_id="YP_002745669.1" /db_xref="GI:225869722" /db_xref="GeneID:7696656" /translation="MRNKKTSIRLVQKYGICSAVVALATIASLGIGNDVRAEDFTYPS MYNQGYFFQQFIKKEILNPGSGSSSDWETSTHYNNGRMLENVLRYLWRVEQFLKKSTG QSEQLYKLYEKDSLGIPGPQGPMGPAGPQGLRGERGPVGERGPIGPQGPEGKPGQQGP KGDTGPQGEPGQQGPKGDIGPQGEPGLPGPKGDTGPQGAPGQQGPKGDTGPQGEQGLQ GPKGDTGPQGAPGQQGPKGDTGPQGEPGQPGPKGDTGPQGEQGLQGPKGDTGPQGAPG QQGPKGDTGPQGAPGQQGPKGDTGPQGVPGQQGESQKVPEVPKAPETPEKKEQPQAPK EPETPKAPEQSPAPQAPKSSEQPASPKAPAPQSAPNKSAAPAAQKGTLPATGEANHPF FTLAALSVIASAGVLGLKKKQD" sig_peptide 245894..246004 /locus_tag="SEQ_0260" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0260 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.959 between residues 37 and 38" misc_feature 245930..245998 /locus_tag="SEQ_0260" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0260 by TMHMM2.0 at aa 13-35" misc_feature 246251..246430 /locus_tag="SEQ_0260" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 3.5e-12" misc_feature 246431..246610 /locus_tag="SEQ_0260" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 2.4e-12" misc_feature 246611..246790 /locus_tag="SEQ_0260" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 1.4e-12" misc_feature 247013..247132 /locus_tag="SEQ_0260" /inference="protein motif:PFAM:PF00746" /note="HMMPfam hit to PF00746, Gram positive anchor, score 1.5e-11" misc_feature 247037..247054 /locus_tag="SEQ_0260" /inference="protein motif:Prosite:PS00343" /note="PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide." repeat_region complement(247670..249098) /note="ISSeq3" repeat_region 247678..247689 /note="perfect inverted repeat flanking IS element" gene complement(247702..248505) /locus_tag="SEQ_0261" /db_xref="GeneID:7696657" CDS complement(247702..248505) /locus_tag="SEQ_0261" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745670.1" /db_xref="GI:225869723" /db_xref="GeneID:7696657" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITDYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature complement(247717..248199) /locus_tag="SEQ_0261" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 1.1e-37" gene complement(248529..249044) /locus_tag="SEQ_0262" /db_xref="GeneID:7696658" CDS complement(248529..249044) /locus_tag="SEQ_0262" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745671.1" /db_xref="GI:225869724" /db_xref="GeneID:7696658" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature complement(248601..248882) /locus_tag="SEQ_0262" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature complement(248685..248723) /locus_tag="SEQ_0262" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" misc_feature complement(248925..248990) /locus_tag="SEQ_0262" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" repeat_region complement(249079..249090) /note="perfect inverted repeat flanking IS element" gene 249478..249789 /locus_tag="SEQ_0263" /db_xref="GeneID:7696659" CDS 249478..249789 /locus_tag="SEQ_0263" /codon_start=1 /transl_table=11 /product="CHY zinc finger protein" /protein_id="YP_002745672.1" /db_xref="GI:225869725" /db_xref="GeneID:7696659" /translation="MRNCFGIALDQEYRCVHYHTVLDIVGLKCARCQAYYACYHCHDT LQDHAFEPTDHKETYPVICGHCRQLLRRSEYECGSCPFCFSPFNPAYHKHQDIYFSKE L" misc_feature 249520..249738 /locus_tag="SEQ_0263" /inference="protein motif:PFAM:PF05495" /note="HMMPfam hit to PF05495, CHY zinc finger, score 4e-25" misc_feature 249589..249606 /locus_tag="SEQ_0263" /inference="protein motif:Prosite:PS00190" /note="PS00190 Cytochrome c family heme-binding site signature." gene 249793..250332 /locus_tag="SEQ_0264" /db_xref="GeneID:7696660" CDS 249793..250332 /locus_tag="SEQ_0264" /codon_start=1 /transl_table=11 /product="BioY family protein" /protein_id="YP_002745673.1" /db_xref="GI:225869726" /db_xref="GeneID:7696660" /translation="MLSTKDLVKVAMMTTLIIILGLIPAIPLGFVPVPIVLQNLGVML AGLILGGKKGTLSILLFLVIGLFLPVFSGSRTTVPVLMGPSAGYVLAWLFVPLVFAFL YRSWLARYRSLAFLAIFISGVLLVDLLGTIWLAVYTDMPLTRSLVASLVFIPGDTIKA VIATALAVSYKDSFLNTNS" sig_peptide 249793..249906 /locus_tag="SEQ_0264" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0264 by SignalP 2.0 HMM (Signal peptide probability 0.956) with cleavage site probability 0.239 between residues 38 and 39" misc_feature join(249835..249903,249937..250005,250048..250116, 250135..250203,250231..250299) /locus_tag="SEQ_0264" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0264 by TMHMM2.0 at aa 15-37, 49-71, 86-108, 115-137 and 147-169" misc_feature 249868..250314 /locus_tag="SEQ_0264" /inference="protein motif:PFAM:PF02632" /note="HMMPfam hit to PF02632, BioY family, score 3e-18" gene 250431..251213 /locus_tag="SEQ_0265" /db_xref="GeneID:7696661" CDS 250431..251213 /locus_tag="SEQ_0265" /codon_start=1 /transl_table=11 /product="metallo-beta-lactamase superfamily protein" /protein_id="YP_002745674.1" /db_xref="GI:225869727" /db_xref="GeneID:7696661" /translation="MKLTTLGSWGAYPYQDAGTTAYLVTGHDGFQLLMDAGSRSLNEL EKEINPLDLDAVIISHYHPDHVADLGVLRHYYQLYPRHLGKPRLLPIYGHDEDEAEFA KLTLPGVSKGIAYQVDRVEALGPFDITFIKTVHPVVCYAFRIVERATGQVLVFTGDTG YFEELADFAAEADVFLADVYLYEGNEHHMAHLTSKEAGQLASRAKVKRLVLTHMPPLP PEGIDPKRHLEVLRQQAQGYAGQIPVDLALPHRAWDLGSLSQ" gene 251210..251704 /locus_tag="SEQ_0266" /db_xref="GeneID:7696662" CDS 251210..251704 /locus_tag="SEQ_0266" /codon_start=1 /transl_table=11 /product="deaminase" /protein_id="YP_002745675.1" /db_xref="GI:225869728" /db_xref="GeneID:7696662" /translation="MSYSKQEQEYFMREALKEAEKSLLKDEIPIGCVIVKAGHIIGRG HNAREERNQAIMHAEIMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHV VYGASNQKFGGAGSLYQILTDERLNHRVQLEVGLLADDCAKLMQTFFRQRRDQKKQDK ESKI" misc_feature 251222..251527 /locus_tag="SEQ_0266" /inference="protein motif:PFAM:PF00383" /note="HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminas, score 6.7e-34" misc_feature 251378..251491 /locus_tag="SEQ_0266" /inference="protein motif:Prosite:PS00903" /note="PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature." misc_feature 251501..251623 /locus_tag="SEQ_0266" /inference="protein motif:Prosite:PS00041" /note="PS00041 Bacterial regulatory proteins, araC family signature." gene complement(251814..253040) /locus_tag="SEQ_0267" /db_xref="GeneID:7696663" CDS complement(251814..253040) /locus_tag="SEQ_0267" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_002745676.1" /db_xref="GI:225869729" /db_xref="GeneID:7696663" /translation="MKNKLSLFLLAALTIVGLSACAWRSNPLADKEQQFGLTGARRQQ VLDQIDQRYYYQQLSQAEKENYLLLYDSLSAFHEVTSLAPASKHSLMTTIDAFMMDNP AFFWITSANYRLERSDQVAFVTFPLPEKVEQTYHRLQAIGDDIIADMPATNDYERVRY FYEWIIKQTDYNRDAFEAYQSGHEALIASNQDIRSVFLDHLSVCNGYAQAFQFLCQKA GIPVAYIRGSVTFDRSQDVFTHAWNTVQIAGKNYAVDTTFGDPVFDQNESIKQLEVNY NFLCLPDQLMKQSHQASRDIVINQTETLTDVWTIPECSDDSLLYTKLNHSYFTAFDRP DILASLEQQLRTNQPQTSLQFANQDLYNQMVSDLEQHSDSYHSLFQAYWPNAAGYFYS LHPSTFSISISIINQQ" sig_peptide complement(251814..251879) /locus_tag="SEQ_0267" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0267 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.417 between residues 22 and 23" misc_feature complement(252978..253010) /locus_tag="SEQ_0267" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 253219..253311 /locus_tag="SEQ__m0010" /db_xref="GeneID:7696664" misc_RNA 253219..253311 /locus_tag="SEQ__m0010" /db_xref="GeneID:7696664" gene 253353..253973 /locus_tag="SEQ_0268" /db_xref="GeneID:7696433" CDS 253353..253973 /locus_tag="SEQ_0268" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745677.1" /db_xref="GI:225869730" /db_xref="GeneID:7696433" /translation="MRKYLQIRLYELSHYVEIIISIILVISLLVLTGRLALSLTGIFT IKSGIDTYLQSFLNQAMSIAIGVELIKMLSKHTSGTIIEVLLFAIARQIVVAHGSAKD SLLSVIALAILFATRKYLFTSFDDTSSIIVRGSQKVKIANVLARVELPVINKNELMRD LMLRHLEEEGKTATIGASIAFSDVALRVDHMHEGVITRIEIIKSLK" misc_feature 253389..253457 /locus_tag="SEQ_0268" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0268 by TMHMM2.0 at aa 13-35" gene 254370..255623 /locus_tag="SEQ_0269" /db_xref="GeneID:7696665" CDS 254370..255623 /locus_tag="SEQ_0269" /EC_number="2.4.1.212" /codon_start=1 /transl_table=11 /product="hyaluronan synthase" /protein_id="YP_002745678.1" /db_xref="GI:225869731" /db_xref="GeneID:7696665" /translation="MRTLKNLITVVAFSIFWVLLIYVNVYLFGAKGSLSIYGFLLIAY LLVKMSLSFFYKPFKGRAGQYKVAAIIPSYNEDAESLLETLKSVQQQTYPLAEIYVVD DGSADETGIKRIEDYVRDTGDLSSNVIVHRSEKNQGKRHAQAWAFERSDADVFLTVDS DTYIYPDALEELLKTFNDPTVFAATGHLNVRNRQTNLLTRLTDIRYDNAFGVERAAQS VTGNILVCSGPLSVYRREVVVPNIDRYINQTFLGIPVSIGDDRCLTNYATDLGKTVYQ STAKCITDVPDKMSTYLKQQNRWNKSFFRESIISVKKIMNNPFVALWTILEVSMFMML VYSVVDFFVGNVREFDWLRVLAFLVIIFIVALCRNIHYMLKHPLSFLLSPFYGVLHLF VLQPLKLYSLFTIRNADWGTRKKLL" sig_peptide 254370..254450 /locus_tag="SEQ_0269" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0269 by SignalP 2.0 HMM (Signal peptide probability 0.925) with cleavage site probability 0.465 between residues 27 and 28" misc_feature join(254388..254456,254466..254534,255324..255392, 255420..255479,255498..255551) /locus_tag="SEQ_0269" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0269 by TMHMM2.0 at aa 7-29, 33-55, 319-341, 351-370 and 377-394" misc_feature 254505..255617 /locus_tag="SEQ_0269" /inference="protein motif:PFAM:PF03142" /note="HMMPfam hit to PF03142, Chitin synthase, score 0.0039" misc_feature 254571..255086 /locus_tag="SEQ_0269" /inference="protein motif:PFAM:PF00535" /note="HMMPfam hit to PF00535, Glycosyl transferase family, score 2.1e-31" gene 255876..257081 /locus_tag="SEQ_0270" /db_xref="GeneID:7696666" CDS 255876..257081 /locus_tag="SEQ_0270" /EC_number="1.1.1.22" /codon_start=1 /transl_table=11 /product="UDP-glucose 6-dehydrogenase" /protein_id="YP_002745679.1" /db_xref="GI:225869732" /db_xref="GeneID:7696666" /translation="MKISVAGSGYVGLSLSILLAQHNDVTVVDIIDEKVRLINQGISP IKDADIEEYLKNAPLNLTATLDGASAYSNADLIIIATPTNYDSERNYFDTRHVEEVIE QVLDLNASATIIIKSTIPLGFIKHVREKYQTDRIIFSPEFLRESKALYDNLYPSRIIV SYEKDDSPRVIQAAKAFAGLLKEGAKSKDTPVLFMGSQEAEAVKLFANTFLAMRVSYF NELDTYSESKGLDAQRVIEGVCHDQRIGNHYNNPSFGYGGYCLPKDSKQLLANYRGIP QSLMSAIVESNKIRKSYLAEQILDRASSQKQAGVPLTIGFYRLIMKSNSDNFRESAIK DIIDIINDYGVNIVIYEPMLGEDIGYRVVKDLEQFKNESTIIVSNRFEDDLADVIDKV YTRDVFGRD" misc_feature 255876..256433 /locus_tag="SEQ_0270" /inference="protein motif:PFAM:PF03721" /note="HMMPfam hit to PF03721, UDP-glucose/GDP-mannose dehydrogenase, score 5.5e-58" misc_feature 255876..256391 /locus_tag="SEQ_0270" /inference="protein motif:PFAM:PF01210" /note="HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 0.0011" misc_feature 256464..256745 /locus_tag="SEQ_0270" /inference="protein motif:PFAM:PF00984" /note="HMMPfam hit to PF00984, UDP-glucose/GDP-mannose dehydrogenase, score 1.6e-36" misc_feature 256830..257060 /locus_tag="SEQ_0270" /inference="protein motif:PFAM:PF03720" /note="HMMPfam hit to PF03720, UDP-glucose/GDP-mannose dehydrogenase, score 6.6e-06" gene 257131..258039 /gene="hasC1" /locus_tag="SEQ_0271a" /gene_synonym="gtaB1" /db_xref="GeneID:7696667" CDS 257131..258039 /gene="hasC1" /locus_tag="SEQ_0271a" /gene_synonym="gtaB1" /EC_number="2.7.7.9" /codon_start=1 /transl_table=11 /product="UTP--glucose-1-phosphate uridylyltransferase 1" /protein_id="YP_002745680.1" /db_xref="GI:225869733" /db_xref="GeneID:7696667" /translation="MTKVRKAIIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEE ALKAGIEEILVVTGKAKRSIEDHFDSNFELEYNLQAKGKTELLKLVDETTAINLHFIR QSHPRGLGDAVLQAKAFVGNEPFVVMLGDDLMDITNPSAKPLTKQLIEDYDCTHASTI AVMRVPHEEVSNYGVIAPQGKAVKGLYSVETFVEKPSPDEAPSDLAIIGRYLLTPEIF AILENQAPGAGNEVQLTDAIDKLNKTQRVFAREFKGERYDVGDKFGFMKTSLDYALKH PQVKDDLTDYIIKLGKALESTQQQTK" sig_peptide 257131..257208 /gene="hasC1" /locus_tag="SEQ_0271" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0271 by SignalP 2.0 HMM (Signal peptide probability 0.956) with cleavage site probability 0.948 between residues 26 and 27" gene 257131..257955 /gene="hasC1" /locus_tag="SEQ_0271" /db_xref="GeneID:7696936" misc_feature 257146..257955 /gene="hasC1" /locus_tag="SEQ_0271" /inference="protein motif:PFAM:PF00483" /note="HMMPfam hit to PF00483, Nucleotidyl transferase, score 3.2e-20" gene complement(258131..258538) /locus_tag="SEQ_0273" /pseudo /db_xref="GeneID:7696935" misc_feature complement(258131..258538) /locus_tag="SEQ_0273" /note="gene remnant. Similar to the N-terminal region of Streptococcus pyogenes serotype M1 integral membrane protein (rhomboid family) UniProt:Q491A8 (EMBL:CP000017 (223 aa) fasta scores: E()=6.5e-33, 70.229% id in 131 aa" /pseudo /db_xref="PSEUDO:CAW92337.1" misc_feature complement(258134..258388) /locus_tag="SEQ_0273" /inference="protein motif:PFAM:PF01694" /note="HMMPfam hit to PF01694, Rhomboid family, score 2.6e-05" /pseudo misc_feature complement(join(258194..258253,258290..258358, 258437..258505)) /locus_tag="SEQ_0273" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0273 by TMHMM2.0 at aa 12-34, 61-83 and 96-115" /pseudo gene complement(258535..259062) /locus_tag="SEQ_0274" /db_xref="GeneID:7696668" CDS complement(258535..259062) /locus_tag="SEQ_0274" /codon_start=1 /transl_table=11 /product="5-formyltetrahydrofolate cyclo-ligase family protein" /protein_id="YP_002745681.1" /db_xref="GI:225869734" /db_xref="GeneID:7696668" /translation="MIKKDYRQLVLQRLAMMTPEDKLEKDLALLAAVVASSSYQEAQT LVTYLPLPHEYQSHLLIERALQDGKTILVPKTRSRGEMVFVAYDPCDLIQTAFGLMEP RCTIAVAKSEIDAIHVPGLVFHPAGYRIGYGGGYYDRYLRDYQGATFSTIYACQWEDF VVEAHDIAVKEVYCQ" misc_feature complement(258538..259056) /locus_tag="SEQ_0274" /inference="protein motif:PFAM:PF01812" /note="HMMPfam hit to PF01812, 5-formyltetrahydrofolate cyclo-ligase, score 1.4e-43" misc_feature complement(258598..258630) /locus_tag="SEQ_0274" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." repeat_region join(259260..260435,261865..262475) /note="ISSeq4" repeat_region complement(260436..261864) /note="ISSeq3" repeat_region 260444..260455 /note="perfect inverted repeat flanking IS element" gene complement(260468..261271) /locus_tag="SEQ_0276" /pseudo /db_xref="GeneID:7696669" misc_feature complement(260468..261271) /locus_tag="SEQ_0276" /pseudo /db_xref="PSEUDO:CAW92342.1" gene complement(261295..261810) /locus_tag="SEQ_0278" /db_xref="GeneID:7696670" CDS complement(261295..261810) /locus_tag="SEQ_0278" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745682.1" /db_xref="GI:225869735" /db_xref="GeneID:7696670" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature complement(261367..261648) /locus_tag="SEQ_0278" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature complement(261451..261489) /locus_tag="SEQ_0278" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" misc_feature complement(261691..261756) /locus_tag="SEQ_0278" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" repeat_region complement(261845..261856) /note="perfect inverted repeat flanking IS element" gene 262550..263491 /locus_tag="SEQ_0280" /db_xref="GeneID:7696671" CDS 262550..263491 /locus_tag="SEQ_0280" /codon_start=1 /transl_table=11 /product="collagen-like cell surface-anchored protein SclD" /protein_id="YP_002745683.1" /db_xref="GI:225869736" /db_xref="GeneID:7696671" /translation="MKLIDSYSHSNSGHVRISFGKGSYRKLRLFLPQKERKMRYTLNK NKRARNYGLCSAAIALAAVASLGTAGSAKAEEAKTLDQLPNPEEQILYNYWDTNDQKA REYLGDLYGFLKSYLGELEKKAKEPGPAGPKGEKGEKGEKGETGPMGPQGLKGEDGKD GAPGEKGEKGDPGIQGPKGEKGDQGQKGEKGDQGQKGEKGDQGQKGEKGDQGQKGEKG DQGQKGEKGDQGQKGEKGDQGIQGQGEHGHKGHHGKDAKPSAPKADSKSTAKAMAPAA QKGTLPATGETNHPFFTLAALGVIASAGMLTLKGKKN" sig_peptide 262550..262741 /locus_tag="SEQ_0280" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0280 by SignalP 2.0 HMM (Signal peptide probability 0.649) with cleavage site probability 0.397 between residues 64 and 65" misc_feature 262691..262759 /locus_tag="SEQ_0280" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0280 by TMHMM2.0 at aa 48-70" misc_feature 262925..263101 /locus_tag="SEQ_0280" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 1e-10" misc_feature 263102..263281 /locus_tag="SEQ_0280" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 1.1e-10" misc_feature 263366..263485 /locus_tag="SEQ_0280" /inference="protein motif:PFAM:PF00746" /note="HMMPfam hit to PF00746, Gram positive anchor, score 1.5e-08" misc_feature 263390..263407 /locus_tag="SEQ_0280" /inference="protein motif:Prosite:PS00343" /note="PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide." gene 263960..264562 /locus_tag="SEQ_0281" /db_xref="GeneID:7696672" CDS 263960..264562 /locus_tag="SEQ_0281" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745684.1" /db_xref="GI:225869737" /db_xref="GeneID:7696672" /translation="MISVKKNLCRLGVLSSSLLLLTAATTPSVIAFADIQTSAIKNNT DDADGMYFVQSYEMSVEDKELLVRNVKANHPTVSEDFIREVIERQLVGDYTLPEEETL FRSAWQGVTVDQLGAALDVAIGMALTGGAGSIAAGVLRVGKREAVGRVKSILIKYGLG KMIAEIPVDYMLNLLSPGYHIARYIDSIDTVPNNNRINLW" sig_peptide 263960..264058 /locus_tag="SEQ_0281" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0281 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.917 between residues 33 and 34" misc_feature join(263996..264064,264308..264376) /locus_tag="SEQ_0281" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0281 by TMHMM2.0 at aa 13-35 and 117-139" gene complement(264978..265358) /locus_tag="SEQ_0282" /db_xref="GeneID:7696673" CDS complement(264978..265358) /locus_tag="SEQ_0282" /EC_number="2.7.1.69" /codon_start=1 /transl_table=11 /product="glucitol/sorbitol-specific phosphotransferase system (PTS), IIA component" /protein_id="YP_002745685.1" /db_xref="GI:225869738" /db_xref="GeneID:7696673" /translation="MIKVFETRVTAIGSEAADMISAANMLILFDQGAPADLADFCYTI DNKQVSGSISAGGQLVIDQMAYDITAVGAVVEKNLAQLGHITISFDGSTASSLPGTLH VKGKGLPQVRQGSLVQIFAWLRCS" misc_feature complement(265005..265358) /locus_tag="SEQ_0282" /inference="protein motif:PFAM:PF03829" /note="HMMPfam hit to PF03829, PTS system glucitol/sorbitol-specific IIA, score 3.2e-56" gene complement(265392..266384) /locus_tag="SEQ_0283" /db_xref="GeneID:7696674" CDS complement(265392..266384) /locus_tag="SEQ_0283" /EC_number="2.7.1.69" /codon_start=1 /transl_table=11 /product="glucitol/sorbitol-specific phosphotransferase system (PTS), IIBC component" /protein_id="YP_002745686.1" /db_xref="GI:225869739" /db_xref="GeneID:7696674" /translation="MTYHSITVVKGSGGYGGPLTITPTEAKHKFIYITGGGKKPDIVD KIAALTGMEAVNGFVTSIPDDEIALAIVDCGGTLRCGIYPKKGIPTINIVATGKSGPL AQYITEDIYVSAVGLEQITASDAQAHVASAKESSVPKASSYDTSKKITEQRAESSFVA RIGMGAGKVVAIFNQAAREAIQTLINTILPFMAFVSLLIGFIQGSGVGNWLAKLMVPL AGNIWGLIIIGFICSLPFLSPLLGPGAVISQIIGTLIGVEIGKGTIPPQMALPALFAI NTQNGCDFIPVALGLSEANAETVEVGVPSVLYSRFLNGVPRVVVAWIASIGLYQ" misc_feature complement(265398..265676) /locus_tag="SEQ_0283" /inference="protein motif:PFAM:PF07663" /note="HMMPfam hit to PF07663, Sorbitol phosphotransferase enzyme II C-t, score 2e-51" misc_feature complement(join(265653..265721,265764..265832)) /locus_tag="SEQ_0283" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0283 by TMHMM2.0 at aa 185-207 and 222-244" misc_feature complement(265839..266375) /locus_tag="SEQ_0283" /inference="protein motif:PFAM:PF03612" /note="HMMPfam hit to PF03612, Sorbitol phosphotransferase enzyme II N-t, score 7.5e-111" gene complement(266400..266945) /locus_tag="SEQ_0284" /db_xref="GeneID:7696675" CDS complement(266400..266945) /locus_tag="SEQ_0284" /codon_start=1 /transl_table=11 /product="glucitol/sorbitol-specific phosphotransferase system (PTS), IIC2 component" /protein_id="YP_002745687.1" /db_xref="GI:225869740" /db_xref="GeneID:7696675" /translation="MEMITRFAEGFMKLFQLGGETFVSWMTGIVPVVLMLLVAMNALI GILGDQRVNQLAKISAKNPISRYMVLPFISAFMLGNPMAISMGRFMPEYYKPSYVAAQ MQFCHTSNGVFPHINPGELFVWLGIASGIKTLGLSQMDLAIRYLLVGLIMNFVGGWVT DFTTAYVAKQQGVTLSKMIEL" misc_feature complement(266421..266945) /locus_tag="SEQ_0284" /inference="protein motif:PFAM:PF03608" /note="HMMPfam hit to PF03608, PTS system enzyme II sorbitol-specific facto, score 3.8e-135" misc_feature complement(join(266466..266525,266676..266744, 266805..266873)) /locus_tag="SEQ_0284" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0284 by TMHMM2.0 at aa 25-47, 68-90 and 141-160" gene complement(267081..267542) /locus_tag="SEQ_0285" /db_xref="GeneID:7696676" CDS complement(267081..267542) /locus_tag="SEQ_0285" /codon_start=1 /transl_table=11 /product="glucitol operon activator protein" /protein_id="YP_002745688.1" /db_xref="GI:225869741" /db_xref="GeneID:7696676" /translation="MSFMVIFGLFVIVAYLFQLLLGLRQLKHFNAVYASLRRQGRVAI GRRAGKIRAGTIVMFALDQSGKVLDARQMQGVTVAARFKPMPAYIGQDIHYFDRYNPL IRRENKLLRLAIEDAREVFLRVEAGVYEDAPKYASAFDWTLQAKQLLARFK" misc_feature complement(267129..267533) /locus_tag="SEQ_0285" /inference="protein motif:PFAM:PF06923" /note="HMMPfam hit to PF06923, Glucitol operon activator protein (GutM), score 1.4e-66" misc_feature complement(267474..267533) /locus_tag="SEQ_0285" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0285 by TMHMM2.0 at aa 4-23" gene complement(267542..269314) /locus_tag="SEQ_0286" /db_xref="GeneID:7696677" CDS complement(267542..269314) /locus_tag="SEQ_0286" /note="CDS is truncated at the N-terminus in comparison to orthologues. Possible gene remnant" /codon_start=1 /transl_table=11 /product="transcription antiterminator" /protein_id="YP_002745689.1" /db_xref="GI:225869742" /db_xref="GeneID:7696677" /translation="MSNAASSIGQLNDILDGDATITQQGAFLQLQVYDYARLETILAG SLRKASDFNSASKRVAYLLKRLLQSSSALVIDDLADEIGVSRSTINKDLKAAKALART YSVMIQGKPNHGIQAVGTELNLRLLYVHEVYKYFEPQGLCGDSLFFLDELYQTYQLPR KIQELLTKSFAITIERMRQGRYLTDPIPYYSNEVDSSAFMEELVYHIELAYQLSLSQY ERQFISFPLNIQYIEDLAYQEKPLQQSIVRLYSKMIEHIKTSLLVTIDQDKLFVALHT HLKLLVNRLIFHVQANDIFHGEIRYKYPLAFDMAIVAAQVLAEEFDCAIELSECSYLA LYFEMMMKDAEHVTEPTVKKIAVVCTTGRGTANMICRRLSKVLGPDLLISQFSEEQFN PDDNDHYFAIFTTVPLKFGQLKSPVLQITNLFDDQWLQNEWRRVHHYHQKNLATITLH FARLSKGKAYTDYLTEMAELLEEKQLVDRQFGQRLLEREALQSTLFGNRIAFPHTIND KETKTVLLLGLLDEPYREHDCLVEFIFLVAISKRVEAQMEADLLKIYDDIFKIASDDK LQAELRSLKSQAEFIAFTKEKGVF" misc_feature complement(268295..268564) /locus_tag="SEQ_0286" /inference="protein motif:PFAM:PF00874" /note="HMMPfam hit to PF00874, PRD domain, score 7.3e-12" misc_feature complement(268907..269215) /locus_tag="SEQ_0286" /inference="protein motif:PFAM:PF05043" /note="HMMPfam hit to PF05043, Mga helix-turn-helix domain, score 0.0025" misc_feature complement(268967..269143) /locus_tag="SEQ_0286" /inference="protein motif:PFAM:PF08279" /note="HMMPfam hit to PF08279, HTH domain, score 1.1e-09" misc_feature complement(269033..269098) /locus_tag="SEQ_0286" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1780.000, SD 5.25 at aa 73-94, sequence LVIDDLADEIGVSRSTINKDLK" gene complement(269608..270957) /gene="pgi" /locus_tag="SEQ_0287" /db_xref="GeneID:7696678" CDS complement(269608..270957) /gene="pgi" /locus_tag="SEQ_0287" /EC_number="5.3.1.9" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate isomerase" /protein_id="YP_002745690.1" /db_xref="GI:225869743" /db_xref="GeneID:7696678" /translation="MSHITFDYSKVLEQFAGQHEIDFLQGQVTEADQALRQGTGPGSD FLGWLELPENYDKEEFARILKAAEKIKADSDVLVVIGIGGSYLGAKAAIDFLNSHFAN LQTAKERKAPQILYAGNSISSSYLADLVDYVQDKDFSVNVISKSGTTTEPAIAFRVFK ELLVKKYGQEEANKRIYATTDKVKGAVKVEADANHWETFVVPDNVGGRFSVLTAVGLL PIAASGADITALMEGANAARKDLSSDKISENIAYQYAVVRNILYRKGYVTEILANYEP SLQYFSEWWKQLAGESEGKDQKGIYPTSANFSTDLHSLGQFIQEGYRNLFETVIRVDK PRQNVIIPEMAEDLDGLGYLQGKDVDFVNKKATDGVLLAHTDGGVPNMFITLPEQDEF TLGYTIYFFELAIALSGYLNGVNPFDQPGVEAYKKNMFALLGKPGFEELGAALNARL" misc_feature complement(269620..270939) /gene="pgi" /locus_tag="SEQ_0287" /inference="protein motif:PFAM:PF00342" /note="HMMPfam hit to PF00342, Phosphoglucose isomerase, score 1e-153" misc_feature complement(270310..270351) /gene="pgi" /locus_tag="SEQ_0287" /inference="protein motif:Prosite:PS00765" /note="PS00765 Phosphoglucose isomerase signature 1." gene complement(271133..272515) /locus_tag="SEQ_0288" /db_xref="GeneID:7696679" CDS complement(271133..272515) /locus_tag="SEQ_0288" /EC_number="2.3.1.157" /codon_start=1 /transl_table=11 /product="bifunctional GlmU protein [includes: UDP-N-acetylglucosamine pyrophosphorylase; glucosamine-1-phosphate N-acetyltransferase]" /protein_id="YP_002745691.1" /db_xref="GI:225869744" /db_xref="GeneID:7696679" /translation="MKNYAIILAAGKGTRMKSGLPKVLHKVSGLSMLEHVLNSVSALA PQKQLTVIGHQAEQVRAVLGDQSLTVVQEEQLGTGHAVMMAEEELSGLEGQTLVIAGD TPLIRGESLKALLDYHIREKNVATILTANAKDPFGYGRIIRNVAGEVVNIVEQKDANE AEQEVKEINTGTYIFDNKRLFEALKHLTTDNAQGEYYLTDVISIFKAGQERVGAYLLK DFDESLGVNDRLALAQAEVIMQERINRQHMLNGVTLQNPAATYIESSVEIAPDVLIEA NVTLKGQTRIGSRSVITNGSYILDSRLGEGVVVSQSVIEDSVLADGVTVGPYAHIRPD SQLDESVHIGNFVEVKGSHLGANTKAGHLTYLGNAEIGSEVNIGAGSITVNYDGQRKY QTVIGDHAFIGSHSTLIAPVEVGENALTAAGSTIAQSVPADSVAIGRSRQVVKEGYAK RLPHHPDQPQ" misc_feature complement(271232..271285) /locus_tag="SEQ_0288" /inference="protein motif:PFAM:PF00132" /note="HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 14" misc_feature complement(271286..271339) /locus_tag="SEQ_0288" /inference="protein motif:PFAM:PF00132" /note="HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 1.2" misc_feature complement(271361..271414) /locus_tag="SEQ_0288" /inference="protein motif:PFAM:PF00132" /note="HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 36" misc_feature complement(271463..271516) /locus_tag="SEQ_0288" /inference="protein motif:PFAM:PF00132" /note="HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 42" misc_feature complement(271517..271570) /locus_tag="SEQ_0288" /inference="protein motif:PFAM:PF00132" /note="HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 0.99" misc_feature complement(271616..271669) /locus_tag="SEQ_0288" /inference="protein motif:PFAM:PF00132" /note="HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 9.6" misc_feature complement(271670..271723) /locus_tag="SEQ_0288" /inference="protein motif:PFAM:PF00132" /note="HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 4.2" misc_feature complement(271829..272506) /locus_tag="SEQ_0288" /inference="protein motif:PFAM:PF00483" /note="HMMPfam hit to PF00483, Nucleotidyl transferase, score 1.6e-10" gene complement(272684..273586) /gene="gtaB2" /locus_tag="SEQ_0289a" /gene_synonym="hasC2" /db_xref="GeneID:7696680" CDS complement(272684..273586) /gene="gtaB2" /locus_tag="SEQ_0289a" /gene_synonym="hasC2" /EC_number="2.7.7.9" /codon_start=1 /transl_table=11 /product="UTP--glucose-1-phosphate uridylyltransferase 2" /protein_id="YP_002745692.1" /db_xref="GI:225869745" /db_xref="GeneID:7696680" /translation="MTKVRKAIIPTAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEE ALKAGIEEILVVTGKAKRSIEDHFDSNFELEYNLQAKGKTELLKLVDETTAINLHFIR QSHPRGLGDAVLQAKAFVGNEPFVVMLGDDLMDITNPSAKPLTKQLIEDYDCTHASTI AVMRVPHEEVSNYGVIAPQGKAVKGLYSVETFVEKPSPDEAPSDLAIIGRYLLTPEIF AILENQAPGAGNEVQLTDAIDKLNKTQRVFAREFKGERYDVGDKFGFMKTSLDYALKH PQVKDDLTDYIIKLSKQLNKDVKK" sig_peptide complement(272684..272761) /gene="gtaB2" /locus_tag="SEQ_0289" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0289 by SignalP 2.0 HMM (Signal peptide probability 0.930) with cleavage site probability 0.922 between residues 26 and 27" gene complement(272762..273586) /gene="gtaB2" /locus_tag="SEQ_0289" /db_xref="GeneID:7696934" misc_feature complement(272762..273571) /gene="gtaB2" /locus_tag="SEQ_0289" /inference="protein motif:PFAM:PF00483" /note="HMMPfam hit to PF00483, Nucleotidyl transferase, score 2.1e-18" gene complement(273612..274631) /gene="gpsA" /locus_tag="SEQ_0290" /db_xref="GeneID:7696933" CDS complement(273612..274631) /gene="gpsA" /locus_tag="SEQ_0290" /EC_number="1.1.1.94" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate dehydrogenase [NAD(P)+]" /protein_id="YP_002745693.1" /db_xref="GI:225869746" /db_xref="GeneID:7696933" /translation="MPKQKVAILGPGSWGTALAQVLNDNGHEVRLWGNIPEQINEINT RHTNSHYFKDIVLDEAIKATLDLKEALADIDAILFVVPTKVTRLVAKQVAQVLDHKAI VMHASKGLEPGTHERLSTILEEEIPAQLRSEVVVVSGPSHAEETIVRDITLITAASKD ITAARYVQTLFSNHYFRLYTNTDVIGVETAGALKNIIAVGAGALHGLGYGDNAKAAVI TRGLAEITRLGVKLGADPLTYSGLSGVGDLIVTGTSVHSRNWRAGAALGRGEKLKDIE NNMGMVIEGISTTKVAYEIAQELGVYMPITSAIYKSIYEGADIKESILGMMSNEFRSE NEWHT" misc_feature complement(273654..274088) /gene="gpsA" /locus_tag="SEQ_0290" /inference="protein motif:PFAM:PF07479" /note="HMMPfam hit to PF07479, NAD-dependent glycerol-3-phosphate deh, score 1.2e-70" misc_feature complement(274137..274622) /gene="gpsA" /locus_tag="SEQ_0290" /inference="protein motif:PFAM:PF01210" /note="HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 1.4e-80" misc_feature complement(274155..274616) /gene="gpsA" /locus_tag="SEQ_0290" /inference="protein motif:PFAM:PF02558" /note="HMMPfam hit to PF02558, Ketopantoate reductase PanE/ApbA, score 0.00046" gene 274841..275290 /locus_tag="SEQ_0291" /db_xref="GeneID:7696681" CDS 274841..275290 /locus_tag="SEQ_0291" /codon_start=1 /transl_table=11 /product="MarR family regulatory protein" /protein_id="YP_002745694.1" /db_xref="GI:225869747" /db_xref="GeneID:7696681" /translation="MPRIIAELRELTHQVEQISEEIAKKYDLQHLAGPQGHVLVFLHC HQDRDIFVKDIEKELQISKSVTSNLVKRMEKNGFIRVVASATDKRCKQVVLTSAGRAK LPVLKECRRDIERYFFKEISREELLTVKKVIDQLKQNIRAYKGDTDA" misc_feature 274931..275146 /locus_tag="SEQ_0291" /inference="protein motif:PFAM:PF01047" /note="HMMPfam hit to PF01047, MarR family, score 2.4e-13" gene 275283..276992 /locus_tag="SEQ_0292" /db_xref="GeneID:7696682" CDS 275283..276992 /locus_tag="SEQ_0292" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding membrane protein" /protein_id="YP_002745695.1" /db_xref="GI:225869748" /db_xref="GeneID:7696682" /translation="MLRNAVMKYKWYAALSLVMISGVVASALLQPHYLKDVLAAIMEN DQTRIAEVGFWLLVIAGIGLVSGAVNTILSAKIAQGVSADIREQTFRKIQSFSYANVE AFNAGNLVVRMTNDINQIQNFVMMLFQILLRLPILFVGAFILAVQALPSLWWVLVLVV VMTMVVIGLVMSQMGPRFGIFQRLMDRINQIAKENLRGVRVVKSFVQEKSQYDTFKEA SNDLLGLNLFIGYGFSIMQPILMLVSYMAIYLSLYLVSGLVKTDPAVIGNMASFMTYM GQISFAITMVGFMGMQASRALTSIGRIREILETEPAMTFVNHEQEELTGSIVFDDVSF TYPNDSEATLKHISFEVEPGQMVGIVGATGAGKSTLAQLIPRLFDPQEGQILIGGKAL PSISQETLRDTVSIVLQKAILFSGTIADNLRQGNPYADQLALENAARIAQAKEFIDRM DAGYQSEVEERGNNFSGGQKQRMSIARGVINNPKILVLDDSTSALDAKSEKLVQEALN KELKETTTVIIAQKISSVVKADKILVLDNGRLIGEGTHAELVASNPIYREIYETQKGR EEN" sig_peptide 275283..275399 /locus_tag="SEQ_0292" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0292 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.884 between residues 39 and 40" misc_feature join(275316..275384,275436..275504,275565..275624, 275652..275720,275739..275807,275985..276053, 276072..276140) /locus_tag="SEQ_0292" /inference="protein motif:TMHMM 2.0" /note="7 transmembrane helices predicted for SEQ0292 by TMHMM2.0 at aa 12-34, 52-74, 95-114, 124-146, 153-175, 235-257 and 264-286" misc_feature 275319..276131 /locus_tag="SEQ_0292" /inference="protein motif:PFAM:PF00664" /note="HMMPfam hit to PF00664, ABC transporter transmembrane region, score 4.4e-21" misc_feature 276342..276896 /locus_tag="SEQ_0292" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 4.9e-50" misc_feature 276363..276386 /locus_tag="SEQ_0292" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 276675..276719 /locus_tag="SEQ_0292" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." gene 276992..278788 /locus_tag="SEQ_0293" /db_xref="GeneID:7696683" CDS 276992..278788 /locus_tag="SEQ_0293" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding membrane protein" /protein_id="YP_002745696.1" /db_xref="GI:225869749" /db_xref="GeneID:7696683" /translation="MKILRFFWFYFKRYKLSFVVIFFAIVLATYLQVKAPVFLGDSLA ELGEWVQRYYKAQALSKMTGQPLVEPSMAPFRTVMGKLLLAYLFTAVANLIYSLLFTR VISHSTNRMRKGLFGKLERLTVGFFDSHKDGAILSRFTSDLDNIQNSMNQSLIQVLTN IALYIGLVLMMFRQDSRLALVTIASTPVALILLVVIITMARKYTDLQQKEVSALNAYM DEKISGQKAIIVQGVQQDAIDGFIEHNERVRAATFKGRLFAGLLFPVMNGMSLLNTAI VIFAGSTIVLGDKSMSTAAALGLVVTFVQYSQQYYQPIMQIASSWGELQLAFTGAGRI QEMFDEKEEVRPEHAPVFTALKEGVEIKHVDFGYLPGQKILSDVSISAPKGKMVAVVG PTGSGKTTIMNLINRFYDVDAGSITFDGRDIREYDLDSLRQRVGIVLQESVLFSGTIA DNIRFGNQTISQKEVETAARATHIHEFIMSLPDGYQTQVSDDENVFSTGQKQLISIAR TLLTDPQVLILDEATSNVDTVTESKIQKAMEAIVAGRTSFVIAHRLKTILNADEIIVL KDGKVIEQGSHHELLRQKGFYAELYHNQFVFE" sig_peptide 276992..277123 /locus_tag="SEQ_0293" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0293 by SignalP 2.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.310 between residues 44 and 45" misc_feature 277031..277933 /locus_tag="SEQ_0293" /inference="protein motif:PFAM:PF00664" /note="HMMPfam hit to PF00664, ABC transporter transmembrane region, score 6e-27" misc_feature join(277037..277090,277235..277303,277451..277510, 277523..277591,277760..277828) /locus_tag="SEQ_0293" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0293 by TMHMM2.0 at aa 16-33, 82-104, 154-173, 178-200 and 257-279" misc_feature 277766..277786 /locus_tag="SEQ_0293" /inference="protein motif:Prosite:PS00046" /note="PS00046 Histone H2A signature." misc_feature 278144..278698 /locus_tag="SEQ_0293" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 1.2e-55" misc_feature 278165..278188 /locus_tag="SEQ_0293" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 278950..279717 /locus_tag="SEQ_0294" /db_xref="GeneID:7696684" CDS 278950..279717 /locus_tag="SEQ_0294" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745697.1" /db_xref="GI:225869750" /db_xref="GeneID:7696684" /translation="MIDLQEILARMNPNQKINYDRVMQQMTKVWARESIRPRILMHVC CAPCSTYTLEYLTQYADITVYFANSNIHPKDEYHRRAYVTQKFVAEFNDKTGNSVQFI EADYVPNEFVKTVRGLEKESEGGDRCRVCFDYRLDKTAQKAVELGFDYFASALTISPH KNSQTINDVGIDVQKVYTTKYLPSDFKKNNGYRRSVEMCEEYDIYRQCYCGCVYAANI QGIDLVQVKKDAKAFMADKDLEADFPRIRFSYAGKEI" misc_feature 279064..279663 /locus_tag="SEQ_0294" /inference="protein motif:PFAM:PF02677" /note="HMMPfam hit to PF02677, Uncharacterized BCR, COG1636, score 1e-46" gene 279919..280365 /gene="dut" /locus_tag="SEQ_0295" /db_xref="GeneID:7696685" CDS 279919..280365 /gene="dut" /locus_tag="SEQ_0295" /EC_number="3.6.1.23" /codon_start=1 /transl_table=11 /product="deoxyuridine 5'-triphosphate nucleotidohydrolase" /protein_id="YP_002745698.1" /db_xref="GI:225869751" /db_xref="GeneID:7696685" /translation="MTRIRGFELVSGFTDTDLLPKRETAHAAGYDLSVAEETSIAPGE IVLVPTGVKAYMQDGEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPANEGHIFAQ MKNITDQTITLSAGERIVQGVFMPFLIADGDQAGGERTGGFGSTGG" misc_feature 279961..280359 /gene="dut" /locus_tag="SEQ_0295" /inference="protein motif:PFAM:PF00692" /note="HMMPfam hit to PF00692, dUTPase, score 1.7e-17" gene 280432..281793 /locus_tag="SEQ_0296" /db_xref="GeneID:7696686" CDS 280432..281793 /locus_tag="SEQ_0296" /note="CDS appears to lack an appropriate inframe translational start site. There is an upstream, out of frame methionine codon (ATG) that could be the translational start site for this CDS, therefore this CDS would be a pseudogene resulting from a frameshift mutation. However, alignment of the N-termini of orthologues of this CDS shows that the predicted translational start occurs at an isoleucine codon (ATA), which has been shown to be a rare translational start codon in some bacteria. Similar to Streptococcus pyogenes serotype M6 RadA UniProt:Q5XDZ7 (EMBL:CP000003 (453 aa) fasta scores: E()=1.5e-133, 89.625% id in 453 aa" /codon_start=1 /transl_table=11 /product="DNA repair protein" /protein_id="YP_002745699.1" /db_xref="GI:225869752" /db_xref="GeneID:7696686" /translation="MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKN ARISLTGEKSKPIKLKHINGVRYQRIQTEMNEFNRVLGGGVVPGSLVLIGGDPGIGKS TLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEG TLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNP SQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVIPTVFGNARRTTTGLDFNRVSLI MAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGE IGLTGDIRRVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKA VFT" misc_feature 280714..280737 /locus_tag="SEQ_0296" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 282443..282589 /locus_tag="SEQ_0297" /db_xref="GeneID:7696687" CDS 282443..282589 /locus_tag="SEQ_0297" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745700.1" /db_xref="GI:225869753" /db_xref="GeneID:7696687" /translation="MLPMSRLAHLPLVSVRLVLSACVKKQFSIQTFQAKDDKIDRQLK AEIA" sig_peptide 282443..282544 /locus_tag="SEQ_0297" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0297 by SignalP 2.0 HMM (Signal peptide probability 0.662) with cleavage site probability 0.652 between residues 34 and 35" gene 282615..283121 /locus_tag="SEQ_0298" /db_xref="GeneID:7696688" CDS 282615..283121 /locus_tag="SEQ_0298" /EC_number="4.2.1.1" /codon_start=1 /transl_table=11 /product="carbonic anhydrase" /protein_id="YP_002745701.1" /db_xref="GI:225869754" /db_xref="GeneID:7696688" /translation="MSYFERFLSANEAYVALHGTAHLPLKPKTKVAIVTCMDSRLHVA QALGLALGDAHILRNAGGRITDDMLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAF TAQLHDTLGVDVSDCDFLPFTDVEASVREDMAILQQSPLIPKDVVISGAVYDVATGRM SQVAMPKS" misc_feature 282684..283106 /locus_tag="SEQ_0298" /inference="protein motif:PFAM:PF00484" /note="HMMPfam hit to PF00484, Carbonic anhydrase, score 1.2e-13" gene 283249..283962 /locus_tag="SEQ_0299" /db_xref="GeneID:7696689" CDS 283249..283962 /locus_tag="SEQ_0299" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745702.1" /db_xref="GI:225869755" /db_xref="GeneID:7696689" /translation="MAYNRMTYTIDSSMQFPLVEIDLDMGESVFLQKGSMVYHTPSIS LNTKLNGRGSGLGKLVGAIGRSMVSGESMFITQAIANDVSGKLALAPSMPGQVIALEL GVDQYRLNDGAFLALDGSAHYTMKRQKLGKALFSGQGGFFVMSTQGEGTLLVNAFGSI KKITLHGDSMTIDNSHVVAWSQDLDYDIHLENGFMQSIGTGEGVVNTFSGYGDVYVQS LNLQQFAGVLQSYIVTGGH" misc_feature 283264..283944 /locus_tag="SEQ_0299" /inference="protein motif:PFAM:PF01987" /note="HMMPfam hit to PF01987, Protein of unknown function DUF124, score 3.8e-84" gene 284564..286009 /gene="gltX" /locus_tag="SEQ_0300" /db_xref="GeneID:7696690" CDS 284564..286009 /gene="gltX" /locus_tag="SEQ_0300" /EC_number="6.1.1.17" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA synthetase" /protein_id="YP_002745703.1" /db_xref="GI:225869756" /db_xref="GeneID:7696690" /translation="MSKPIRVRYAPSPTGLLHIGNARTALFNYLYARHHGGDFIIRIE DTDRKRHVEDGERSQLENLKWLGIDWDESPETHERYRQSERLALYQQYIDQLLAEGKA YKSYVTEEELAAERERQEAAGETPRYVNEYLGMSAYEKAAYIAEREAAGIVPTVRLAV NEAGVYKWTDMVKGDIVFEGGNVGGDWVIQKKDGYPTYNFAVVIDDHDMQISHVIRGD DHIANTPKQLMVYEALGWEAPVFGHMTLIINSETGKKLSKRDTNTLQFIEDYRKKGYM PEAVFNFIALLGWNPGGEAEIFSREQLIALFDEIRLSKSPAAFDQKKMDWMSNEYFKH ADLGAVYALCKPFLEAAGRLTEKAEKLVELYQPQLSSADEIVPLTDLFFSDFPELTAK EKEVMAAETVPTVLKAFKEKLEAMSDEDFKPENIFPQIKAVQKETGIKGKNLFMPIRI AVSGEMHGPELPNTIYLLGREQSIEHIANML" misc_feature 284573..285541 /gene="gltX" /locus_tag="SEQ_0300" /inference="protein motif:PFAM:PF00749" /note="HMMPfam hit to PF00749, tRNA synthetases class I (E and Q), cata, score 4.3e-158" misc_feature 284594..284629 /gene="gltX" /locus_tag="SEQ_0300" /inference="protein motif:Prosite:PS00178" /note="PS00178 Aminoacyl-transfer RNA synthetases class-I signature." gene 286454..287800 /locus_tag="SEQ_0301" /db_xref="GeneID:7696691" CDS 286454..287800 /locus_tag="SEQ_0301" /codon_start=1 /transl_table=11 /product="sensor histidine kinase" /protein_id="YP_002745704.1" /db_xref="GI:225869757" /db_xref="GeneID:7696691" /translation="MTDIYYLFLLLSLMIYYVTEISIFSFLSDIKLALWKQIFVLTAA LFLNQFALLPPLIIDPLLLLAVLALEKRPCFSLKALFLAFVPGVFVDLLSRFILAIVL PYIFSVNGSYVRHLVLDFIAYVMIFPSFALINYFVGKDYKQIVKADRFDKASSFYSLF LLFSLAYYIDLFMILGFTDPFLDLKSPIMMSTSYKVLFLIFTLLLIYLLSYFNHQSKE FLKQELKKEQQAYIANLETYGKHLEKLYKGVKVFQLVYLKRLERLGQAIDSGSVSDVQ TVYAQTVDEATDYWDDKHYNISKLSKISVSSIKSLLSSKIIKAEKAGIALSLEVPDRI RDSYISELDLLLLVSIFCDNAIEAALETAQPAVAIAYFLSDDQQIFTVTNTTKDERVM ISRIFEEGYSSKGSGRGIGLSNAKRILQKYPELSLRTRSHDYQFSQTLIMPKIEKE" misc_feature join(286466..286534,286586..286654,286688..286756, 286799..286867,286916..286984,287012..287080) /locus_tag="SEQ_0301" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0301 by TMHMM2.0 at aa 5-27, 45-67, 79-101, 116-138, 155-177 and 187-209" misc_feature 287468..287782 /locus_tag="SEQ_0301" /inference="protein motif:PFAM:PF02518" /note="HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 9.2e-07" gene 287812..289110 /locus_tag="SEQ_0302" /db_xref="GeneID:7696692" CDS 287812..289110 /locus_tag="SEQ_0302" /codon_start=1 /transl_table=11 /product="sensor kinase" /protein_id="YP_002745705.1" /db_xref="GI:225869758" /db_xref="GeneID:7696692" /translation="MLGMSFFYALIFVNSWVIFSTFSGIKLAVRSLLLVGACFVVANL LLDHVLLVDQLVFVAVSVGFAPHKKASEHLFNGLFAIMIVELLFRIIGSFLLPAVLGY SIHQINNDIGLLMVCHALVLPAFYLFSYIFSVDLTLIKFISEDKLKKWVFWMNAALLF YYVMVHCMINIQGDFFKIYFRYRSVMIFLYLMLLIWVIVKLDRFAKDQLSQRLALAQK ERVAYLEKHNQYIERLCREIRAIKHDSENILISLKDSIDSGDIAAISKVYQTVIQESA SSIRQLTPELSALDNVQDSVIRSLLHAKLLEAKLQGIAVYIDIPETLASSSVRLLDVI VLFKVVIDNAILSAKGSSRPFLSIAYFNQDGKRFFIIENSTRLKRVDIAKQFDASRLE LGSHAHKRLLQFSAVLERYPHITFSTKSDHYRLRQLLEMR" misc_feature join(287830..287898,287926..287994,288031..288099, 288142..288210,288259..288327,288355..288408) /locus_tag="SEQ_0302" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0302 by TMHMM2.0 at aa 7-29, 39-61, 74-96, 111-133, 150-172 and 182-199" gene 289114..289854 /locus_tag="SEQ_0303" /db_xref="GeneID:7696693" CDS 289114..289854 /locus_tag="SEQ_0303" /codon_start=1 /transl_table=11 /product="response regulator protein" /protein_id="YP_002745706.1" /db_xref="GI:225869759" /db_xref="GeneID:7696693" /translation="MLNIFILEDNLIQQSRIEAIVASILEEGRIPHNQLEVFSNPQKL FDSIQERGDHQLYFLDIEIGDKSRSGLELASDIRQKDPNAVLVFVTTHSEFAPISFRY KVSALDFIDKAVDSQQFKERIEECIRYTYEMMSSRQVEEMFLFETPQTRLKLPYKDIL YFATATTPHKVCLWTQTERLEFYGNLSEIHAVAPKLFLCHRSYLVNLDNVVRIDKAKQ LVYFENGDSCMVSRLRMKQLFEKWKSFR" misc_feature 289117..289485 /locus_tag="SEQ_0303" /inference="protein motif:PFAM:PF00072" /note="HMMPfam hit to PF00072, Response regulator receiver domain, score 5.4e-07" misc_feature 289558..289842 /locus_tag="SEQ_0303" /inference="protein motif:PFAM:PF04397" /note="HMMPfam hit to PF04397, LytTr DNA-binding domain, score 6.3e-26" gene 290346..290705 /gene="rnpA" /locus_tag="SEQ_0304" /db_xref="GeneID:7696694" CDS 290346..290705 /gene="rnpA" /locus_tag="SEQ_0304" /EC_number="3.1.26.5" /codon_start=1 /transl_table=11 /product="ribonuclease P protein component" /protein_id="YP_002745707.1" /db_xref="GI:225869760" /db_xref="GeneID:7696694" /translation="MKKSYRVKREKDFQAIFKLGQSMANRKFVIYHLKGEHKHFRAGI SVGKKLGNAVTRNAVKRKIRHVLMELGDHLKSEDFVVIARRGAEELDYQAVKQNLHHV LKLAKLLEEGFEIEKKS" misc_feature 290346..290666 /gene="rnpA" /locus_tag="SEQ_0304" /inference="protein motif:PFAM:PF00825" /note="HMMPfam hit to PF00825, Ribonuclease P, score 4.8e-28" gene 290671..291498 /locus_tag="SEQ_0305" /db_xref="GeneID:7696695" CDS 290671..291498 /locus_tag="SEQ_0305" /codon_start=1 /transl_table=11 /product="membrane protein OxaA 1 precursor" /protein_id="YP_002745708.1" /db_xref="GI:225869761" /db_xref="GeneID:7696695" /translation="MRKVLRLKKRVKTAALVPLVLLLVACGRGEVTAQSSSSWEQLVY FFAKAIQWLSFDGSTGIGIILFTIMIRLLLLPLFNMQIKSGQKMQDIQPELKALQKKY AAKDTATRMKLAEESQALYKKYGVNPYMSLLPLLIQMPVMFALFQSLTRVAFLREGTF LWVELARHDHLFILPILAAVFTFLSTWLTNLAAREKTAMITIMTYVMPVFIFFMGFNL ASGVVLYWAVSNAFQVVQLLLFNNPFKVIAERQRLADEEKERRAKERRARKRAMKRK" sig_peptide 290671..290769 /locus_tag="SEQ_0305" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0305 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.536 between residues 33 and 34" misc_feature join(290707..290766,290824..290892,291055..291123, 291181..291249,291286..291354) /locus_tag="SEQ_0305" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0305 by TMHMM2.0 at aa 13-32, 52-74, 129-151, 171-193 and 206-228" misc_feature 290716..290748 /locus_tag="SEQ_0305" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 290839..291405 /locus_tag="SEQ_0305" /inference="protein motif:PFAM:PF02096" /note="HMMPfam hit to PF02096, 60Kd inner membrane protein, score 4.4e-56" gene 291510..292409 /locus_tag="SEQ_0306" /db_xref="GeneID:7696696" CDS 291510..292409 /locus_tag="SEQ_0306" /codon_start=1 /transl_table=11 /product="ssDNA-binding protein" /protein_id="YP_002745709.1" /db_xref="GI:225869762" /db_xref="GeneID:7696696" /translation="MVLFTGKTVEEAIEKGLQELGLSRLKAHIKVISKEKKGFLGFGK KPAQVDIEGINEKTVYKADKKAVRSVPEEINRQNAPVINPDEVELEEMKAVRSQDRRA AESDAHQPTGPLSTAQSAPTQSKAQPVSSAAGASQLDPAAADMSKDIELAAQEISDYV TKIIYEMDIEASIERTNNRRQINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYS KNFSVSLNVHDYVEHRTETLIDFTKKVSKRVLESGQDYTMDPMSNSERKIVHKTVSAI DGVESYSEGNDPNRYVVVSLIHD" misc_feature 292233..292400 /locus_tag="SEQ_0306" /inference="protein motif:PFAM:PF01424" /note="HMMPfam hit to PF01424, R3H domain, score 1.6e-11" gene complement(292449..292697) /locus_tag="SEQ_0307" /pseudo /db_xref="GeneID:7696697" misc_feature complement(292449..292697) /locus_tag="SEQ_0307" /note="gene remnant. Similar to an internal region of Streptococcus thermophilus transposase Tnp1193 UniProt:Q5LYW0 (EMBL:CP000024 (448 aa) fasta scores: E()=1.9e-05, 45.333% id in 75 aa" /pseudo /db_xref="PSEUDO:CAW92396.1" gene 293050..294858 /locus_tag="SEQ_0308" /db_xref="GeneID:7696698" CDS 293050..294858 /locus_tag="SEQ_0308" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745710.1" /db_xref="GI:225869763" /db_xref="GeneID:7696698" /translation="MSYNIKYDEITSLQQSTQTTISAWGDGITSIQTALSALIGDSRL QGQTASSIKSYLSEVHGTLLQTLQSLMNDYSASLLLYKDGYYQIDSNSHAQLPGQVFK TLQSELRLSQAHLKDQLELLQNTRAKLSDLVHYSGVSHAKTVVDYSELITDIHRLDEA IIQYESNHASQDLAAFKELLASTKALIAEYSSKPKRAGSYQVGDIGQLNTIKRFATAY QGVARHLETNAKRLQAAQERDHARFEAVAAEDRAKQGWIDLALSLVTIAVGVAAIVMT AGAATPLVVGAFVVGSGTVAYGASNLYEAGHNIYLGSVGDGLTVATNPLRDTLFMGND RLYHQIGGLFTTASAALILIGQTKSVAKGLTEFTIGEVGGFIGGQASYHGTKLLGGSE QDAQRATLVGNILAGYAASSAARRFSLNEPIAARVTKPTYNHQQLLKNLENSRLARES SNFGGYIKKESVTKYPTQIDSKVTVGAKENLPGWIADSFTDSHYRTVITGEEITLYRT FGGASDAGGGFVTTVPATNRIQAKIDTALLPEWKNTRQYEAVIKIPKGSQLNIGKVAP QTVKSSGTTLIGGGDQVLLPNRWPLEWIQEIRIVPN" gene 294873..295133 /locus_tag="SEQ_0309" /db_xref="GeneID:7696699" CDS 294873..295133 /locus_tag="SEQ_0309" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745711.1" /db_xref="GI:225869764" /db_xref="GeneID:7696699" /translation="MDNNNCFQYTQRLRELIELEYPKQKNYSGILRDLYVLTNDIDNN RIVGNINFSSLARQFVDDTTQYDSPILKTLKDLEVCLNRKRR" gene 295235..295474 /locus_tag="SEQ_0309a" /pseudo /db_xref="GeneID:7696700" misc_feature 295235..295474 /locus_tag="SEQ_0309a" /note="Possible gene remnant" /pseudo gene 295456..295878 /locus_tag="SEQ_0310" /db_xref="GeneID:7696701" CDS 295456..295878 /locus_tag="SEQ_0310" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745712.1" /db_xref="GI:225869765" /db_xref="GeneID:7696701" /translation="MEHSQLEWEDVSQYEEVKGYGQQVWKRQGTYYLVTNEGGIAEQR VVYELPYDLFELLEQGKRNLGEIAFKLRYDCWPPTEEEKIASDKAFLQRSPIALIADP TSWELFTQEELRKLIPIAEQKWIDWKGKLPDDYVSPLK" gene 296077..296946 /locus_tag="SEQ_0311" /db_xref="GeneID:7696702" CDS 296077..296946 /locus_tag="SEQ_0311" /note="Similar to the C-terminal region of Streptococcus pyogenes serotype M3 NAD glycohydrolase Nga UniProt:Q1J8R6 (EMBL:CP000262 (454 aa) fasta scores: E()=6.4e-34, 41.667% id in 264 aa" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745713.1" /db_xref="GI:225869766" /db_xref="GeneID:7696702" /translation="MKNLENSRLATESSRFKSYVAREKLINTLRKQNADLNLITFREK AIEIFNRDLKGNSWVSIRQADEFVETLDDYAQLSVDNGAVSTKADFYKMYSNKNYIYL DGFIKNIKQLYIKTGASSIVNGQDLYNAIEQYGTIGRGKSGNFATSMAEDIALLYDSS GNLVSSGMIEAIKGVDEGKYLSGAFQYEYSPQFVKSFDQIGEVRTVTGKTPGSSLLNI PGAKTWAGKNMALSQSELMMPSIDTSNLKLEDVLLSMESTGIYTLNNPTIVLKDGTKK IVEGQFIIRKLGN" misc_feature 296479..296502 /locus_tag="SEQ_0311" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 296948..297454 /locus_tag="SEQ_0312" /db_xref="GeneID:7696703" CDS 296948..297454 /locus_tag="SEQ_0312" /note="N-terminal region is similar to the N-terminus of Streptococcus pyogenes hypothetical protein UniProt:Q5R2D9 (EMBL:AB128036 (161 aa) fasta scores: E()=0.17, 23.967% id in 121 aa" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745714.1" /db_xref="GI:225869767" /db_xref="GeneID:7696703" /translation="MTQTFFNNDVDERRRQLYLDARSKGHLEKCFRGDSGFKINAKDS YFQSITDINVLIERCLYPLYDLGDSIIPHETERILSQFSTSKNVVELYQVVSYIFYQK NNKLLKKNFSFYIDFNPMIPDLVFSVKRLSPENIVTDDEKAMVGFIKNMFQKIPQVQS YLEAQNCK" gene 297598..298020 /locus_tag="SEQ_0313" /pseudo /db_xref="GeneID:7697417" misc_feature 297598..298020 /locus_tag="SEQ_0313" /note="CDS contains a nonsense mutation (ochre) after codon 109" /pseudo /db_xref="PSEUDO:CAW92407.1" gene 298137..298253 /locus_tag="SEQ_0314" /db_xref="GeneID:7696704" CDS 298137..298253 /locus_tag="SEQ_0314" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745715.1" /db_xref="GI:225869768" /db_xref="GeneID:7696704" /translation="MELPTTGIVELEKLGAREDWTGSLFFVSLSSLSSNNRT" gene 298549..299274 /locus_tag="SEQ_0315" /db_xref="GeneID:7697333" CDS 298549..299274 /locus_tag="SEQ_0315" /EC_number="5.1.3.9" /codon_start=1 /transl_table=11 /product="N-acetylmannosamine-6-phosphate 2-epimerase" /protein_id="YP_002745716.1" /db_xref="GI:225869769" /db_xref="GeneID:7697333" /translation="MLEKPSKAELLTALKDGLIVSCQALPGEPLYSEAGGIMPLMAKA AEEAGAVGIRANGVRDIKEIQAVTDLPIIGIIKKEYPPQAPFITPTMAEVDALAALDV AVIALDCTQRERHDGLAIADFIRSIRKKYPEQLFMADISTLEEGLVAYEAGIDFVGTT LSGYTPYSRQGTGPDMELISALCDAGVSVIAEGKIHSPEEARAVQALGVAGIVVGGAI TRPKEIAERFVAALKKEEKSHGF" misc_feature 298660..299250 /locus_tag="SEQ_0315" /inference="protein motif:PFAM:PF04131" /note="HMMPfam hit to PF04131, N-acetylmannosamine-6-phosphate epi, score 5e-125" gene 299264..300775 /locus_tag="SEQ_0316" /db_xref="GeneID:7697334" CDS 299264..300775 /locus_tag="SEQ_0316" /codon_start=1 /transl_table=11 /product="sugar phosphotransferase system (PTS), IIBC component" /protein_id="YP_002745717.1" /db_xref="GI:225869770" /db_xref="GeneID:7697334" /translation="MDFKKFSKLGQAFMLPISILPVAGLLLGIGGALSNSNAIAQFPI LNQAWLQAIFTIMSTAGNAVFANIALIFAIGVAVGLANGDKGTAGLSGAVAYLVFTAT ISGYLTLFSAKDAQIDTGVLGALTVGLVVVSLHNKYRKIELPAFLGFFGGSRFIPIVS SLAAIVIGSVFYVIWPPIQNLLVVFGEKIADMGSIGTFLYGFFLRLTGAVGLHHTIYP MFWYTSLGGSEVVAGETIQGAQNIFFAQLADANHTDLFTYGTRFFAGRFATMMFGLPA ACLAMYHAIPKANRKKVGSFYSSSALTSLLTGITEPIEFAFLFVAPWLYVVHAFLDGC SFLVADLLKIRIGNSFSGGLIDFLIFGVFQGNDHTNWLLVIPVGIVWFMVYYFVFKFF VSKFQVAVPGMVAQVEAEGQAETTNTQSSSLREVSLAIIEALGGQANIEDVTACATRL RVSLSDSSLVNKNVLTSLGATAVLDVKNGIQAIYGGKAILYSQEINQLLGRED" sig_peptide 299264..299377 /locus_tag="SEQ_0316" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0316 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.427 between residues 38 and 39" misc_feature 299291..300262 /locus_tag="SEQ_0316" /inference="protein motif:PFAM:PF02378" /note="HMMPfam hit to PF02378, Phosphotransferase system, EIIC, score 1.2e-95" misc_feature join(299297..299365,299408..299506,299525..299593, 299606..299665,299726..299794,299837..299905, 300050..300118,300206..300274,300293..300361, 300374..300442) /locus_tag="SEQ_0316" /inference="protein motif:TMHMM 2.0" /note="10 transmembrane helices predicted for SEQ0316 by TMHMM2.0 at aa 12-34, 49-81, 88-110, 115-134, 155-177, 192-214, 263-285, 315-337, 344-366 and 371-393" misc_feature 300542..300646 /locus_tag="SEQ_0316" /inference="protein motif:PFAM:PF00367" /note="HMMPfam hit to PF00367, phosphotransferase system, EIIB, score 5.5e-14" misc_feature 300578..300631 /locus_tag="SEQ_0316" /inference="protein motif:Prosite:PS01035" /note="PS01035 PTS EIIB domains cysteine phosphorylation site signature." gene 300777..301292 /locus_tag="SEQ_0317" /db_xref="GeneID:7697335" CDS 300777..301292 /locus_tag="SEQ_0317" /codon_start=1 /transl_table=11 /product="glucose-specific phosphotransferase system (PTS), IIABC component" /protein_id="YP_002745718.1" /db_xref="GI:225869771" /db_xref="GeneID:7697335" /translation="MIKKWKQLLSAKKADALSDRILSVAKGQLVPITSVSDPVFSERL MGDGFAIIPQEGAIYAPVTGRVMTVFPTKHAYGIVTPAGLEVLIHIGVDTVELGEAAF SSDIVAGQEVVAGQLLAQVSLPVLEAAQKDSTVMVVFTNSQDIADMRLADAGAVAARA EVGQVRLKATL" misc_feature 300822..301220 /locus_tag="SEQ_0317" /inference="protein motif:PFAM:PF00358" /note="HMMPfam hit to PF00358, phosphoenolpyruvate-dependent sugar phosph, score 3.1e-48" misc_feature 301023..301061 /locus_tag="SEQ_0317" /inference="protein motif:Prosite:PS00371" /note="PS00371 PTS EIIA domains phosphorylation site signature 1." repeat_region complement(301564..301591) /note="perfect repeat flanking IS element" repeat_region complement(301591..303135) /note="ISSeq2" gene complement(301647..303044) /locus_tag="SEQ_0318" /db_xref="GeneID:7697336" CDS complement(301647..303044) /locus_tag="SEQ_0318" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745719.1" /db_xref="GI:225869772" /db_xref="GeneID:7697336" /translation="MIESKKYLVIKAVCEGKKQKNRACVELGLSKRQVNRLILAYREK GKSAFVHGNRSKRPTHAMSLETKRRIIEKYQSYGDLRPNVVHFCELLAEEENIAYSDT TVRKLLYQAGFLSPKTQRATKRRLKQEAKQKKREAEKRGSKLPTASNFFEEPDKAHPS RARKKFKGELIQMEASQFPWFGQQETHLHVAIDDASGDIVGAYFDTQETLNGYYHVLE QILEVHGIPFQFLTDKRTVFTYASSQSKKIEEDTFTQFGYACHQLGIAIETSSIPQAK GRVERLNQTLQSRLPIDLQRNQITSISQANRYLKRWIKRFNKQFGGLASESVFEKAPK PAQRNLLLARISERVIDSGHHIRYQNNFYLPVEGDKKIYFTRKTKALVIEAFDGDIYL NIADNIYATRKLPKHEKHSKEFEMVPKTKKERRKYIPPQSHPWKLASFKQYLHKIGKS YEEFKRERNTSQPQL" misc_feature complement(302055..302558) /locus_tag="SEQ_0318" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 6.4e-17" misc_feature complement(302904..302927) /locus_tag="SEQ_0318" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." repeat_region complement(303135..303162) /note="perfect repeat flanking IS element" gene 303267..303401 /gene="rpmH" /locus_tag="SEQ_0319" /db_xref="GeneID:7697337" CDS 303267..303401 /gene="rpmH" /locus_tag="SEQ_0319" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L34" /protein_id="YP_002745720.1" /db_xref="GI:225869773" /db_xref="GeneID:7697337" /translation="MKRTYQPSKIRRQRKHGFRHRMSTKNGRRVLASRRRKGRKVLSA" misc_feature 303270..303329 /gene="rpmH" /locus_tag="SEQ_0319" /inference="protein motif:Prosite:PS00784" /note="PS00784 Ribosomal protein L34 signature." gene 303688..304413 /locus_tag="SEQ_0320" /pseudo /db_xref="GeneID:7697338" misc_feature 303688..304413 /locus_tag="SEQ_0320" /note="CDS contains a nonsense mutation (amber) after codon 144. Similar to Streptococcus pyogenes serotype M3 N-acetylmannosamine-6-phosphate 2-epimerase NanE UniProt:Q8K8P4 (EMBL:AE014074 (234 aa) fasta scores: E()=9.5e-62, 76.923% id in 234 aa" /pseudo /db_xref="PSEUDO:CAW92420.1" misc_feature join(303799..304119,304123..304389) /locus_tag="SEQ_0320" /inference="protein motif:PFAM:PF04131" /note="HMMPfam hit to PF04131, N-acetylmannosamine-6-phosphate epi, score 1.4e-118" /pseudo gene 304432..305745 /locus_tag="SEQ_0321" /db_xref="GeneID:7697339" CDS 304432..305745 /locus_tag="SEQ_0321" /codon_start=1 /transl_table=11 /product="extracellular solute-binding lipoprotein" /protein_id="YP_002745721.1" /db_xref="GI:225869774" /db_xref="GeneID:7697339" /translation="MKMKKLASFVMLGASVLGLAACGSSSKEADKSDSAAKTEITWWA FPTFTQEKADDSVGTYEKKIIAAFEKANPDIKVKLETIDFTSGPEKITTAIEAGTAPD VLFDAPGRIIEYGKNGKLADLNDLFTDEFIKDVNNDNIIQASKAGDTAYMYPISSAPF YMALNKKMLKDAGVLDLVKEGWTTDDFEKVLKALKDKGYNPGSFFANGQGGDQGPRAF FANLYSSRITNDDVTKYTTDDANSVKSMEKIASWIKDGLLMNGSQYDGSADIQNFANG QTSFTILWSPAQAGTQAKLLEASKVDYVEVPFPSEDGKPELEYLVNGFAVFNNKDDKK IEASKKFIQFIADDKEWGPKNVVRTGAFPVRSSYGNLYDDERMAMVSKWTQYYSPYYN TIDGFAEMRTLWFPMVQAVSNGDEKPAAALKAFTEKANKTIEKAQ" sig_peptide 304432..304515 /locus_tag="SEQ_0321" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0321 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.651 between residues 28 and 29" misc_feature 304459..305487 /locus_tag="SEQ_0321" /inference="protein motif:PFAM:PF01547" /note="HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 1.1e-27" misc_feature 304465..304497 /locus_tag="SEQ_0321" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 305846..306733 /locus_tag="SEQ_0322" /db_xref="GeneID:7697340" CDS 305846..306733 /locus_tag="SEQ_0322" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="YP_002745722.1" /db_xref="GI:225869775" /db_xref="GeneID:7697340" /translation="MNVNKLKMRETLVSYAFLAPVLVFFVVFVLVPMIMGFVTSFFNY TMTDFTFVGLDNYVRMFQDPVFIKSLINTLIIVVGSVPIVVFFSLFVATKTYNKHVIS RSFYRAVFFLPVVTGSVAVTVVWKWIYDPMSGILNYVLKYGHVIEQNISWLGDKHWAL LAIIVILLTTSVGQPIILYIAAMGNIDNSLVEAARVDGATELQVFWKIKWPSLLPTTL YITVITTINSFQCFALIQLLTSGGPNYSTSTLMYYLYEKAFKLSEYGYANTMGVFLAI LISLISFAQFKFLGNDVEY" sig_peptide 305846..305953 /locus_tag="SEQ_0322" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0322 by SignalP 2.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.457 between residues 36 and 37" misc_feature join(305879..305947,306053..306121,306158..306226, 306317..306385,306635..306703) /locus_tag="SEQ_0322" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0322 by TMHMM2.0 at aa 12-34, 70-92, 105-127, 158-180 and 264-286" misc_feature 306041..306730 /locus_tag="SEQ_0322" /inference="protein motif:PFAM:PF00528" /note="HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.7e-14" gene 306746..307576 /locus_tag="SEQ_0323" /db_xref="GeneID:7697341" CDS 306746..307576 /locus_tag="SEQ_0323" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="YP_002745723.1" /db_xref="GI:225869776" /db_xref="GeneID:7697341" /translation="MRKKKLTASDILTTAILCLLTILFIFPFYWIMTGAFKSQPDTIV VPPQWWPKAPTVENFKALIIQNPALKWLWNSIYISVATMLLVCGTSSLAGYALAKKRF YGQRLLFSIFIAAMALPKQVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQF SENIPTELLESAKIDGCGEIRTFFNVAFPIIKPGFAALAIFTFINTWNDYFMQLVMLT SRDHLTISLGVATMQAEMATNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG" sig_peptide 306746..306856 /locus_tag="SEQ_0323" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0323 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.534 between residues 37 and 38" misc_feature 306746..306889 /locus_tag="SEQ_0323" /inference="protein motif:Prosite:PS00430" /note="PS00430 TonB-dependent receptor proteins signature 1." misc_feature join(306779..306847,306971..307039,307064..307132, 307145..307213,307289..307357,307460..307528) /locus_tag="SEQ_0323" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0323 by TMHMM2.0 at aa 12-34, 76-98, 107-129, 134-156, 182-204 and 239-261" misc_feature 306959..307558 /locus_tag="SEQ_0323" /inference="protein motif:PFAM:PF00528" /note="HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 7.3e-24" gene 307592..308047 /locus_tag="SEQ_0324" /db_xref="GeneID:7697342" CDS 307592..308047 /locus_tag="SEQ_0324" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745724.1" /db_xref="GI:225869777" /db_xref="GeneID:7697342" /translation="MLYDVLENIRRYKGIHRHLDVAIDFLLTRDLRSLTDGKHVILED KVVLFIQHNCLNKEDNALFEYHKRYADLHLLVEGNERVRYGLGYKQEAVSFDEASDIG FVTCERTYDLDLGNDCFCYFFPNEAHQPNGFNDDGDAVTKCLIKVLMED" misc_feature 307592..308041 /locus_tag="SEQ_0324" /inference="protein motif:PFAM:PF04074" /note="HMMPfam hit to PF04074, Domain of unknown function (DUF386), score 2e-39" gene 308072..308722 /locus_tag="SEQ_0325" /db_xref="GeneID:7697343" CDS 308072..308722 /locus_tag="SEQ_0325" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745725.1" /db_xref="GI:225869778" /db_xref="GeneID:7697343" /translation="MSSKKRKLMQSIFSLDSKWLRASATIFDLIVLNLLFVLSCLPVV TIGIAKMALYASLRDYRQGDIGSVVGVYGSYLRRFAKRGLQLGILEVLLTSFILVDLY LIQAQVSLFFQLFKISCIAILFVAIMVFLYAYPLAMRYDLPLMSLFQRSFILLSLFFP FSFAFLAVMLLVVFLLQLSPLSLLGGLSLLAIIGISSLTYPYVVIMENLLQKVQLY" sig_peptide 308072..308233 /locus_tag="SEQ_0325" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0325 by SignalP 2.0 HMM (Signal peptide probability 0.795) with cleavage site probability 0.601 between residues 54 and 55" misc_feature join(308147..308215,308315..308383,308420..308488, 308531..308599,308618..308686) /locus_tag="SEQ_0325" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0325 by TMHMM2.0 at aa 26-48, 82-104, 117-139, 154-176 and 183-205" misc_feature 308156..308374 /locus_tag="SEQ_0325" /inference="protein motif:PFAM:PF04854" /note="HMMPfam hit to PF04854, Protein of unknown function, DUF624, score 1.6e-07" misc_feature 308159..308191 /locus_tag="SEQ_0325" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 308751..309671 /locus_tag="SEQ_0326" /db_xref="GeneID:7697344" CDS 308751..309671 /locus_tag="SEQ_0326" /EC_number="4.1.3.3" /codon_start=1 /transl_table=11 /product="N-acetylneuraminate lyase" /protein_id="YP_002745726.1" /db_xref="GI:225869779" /db_xref="GeneID:7697344" /translation="MKTLTKYQGIIPAFYACYDAEGNISPERVRALTQYYIDKGVQGL YVNGSSGECIYQSVADRKLVLEHVMAVAKGKLTIINHVACNNTKDSIELAQHAEALGV DAIAAIPPIYFRLPEHAVAAYWNAISAAAPNTDFVIYNIPQLAGIALTPSLYQEMLKN ERVIGVKNSSMPVQDIQTFCAIGGDDHLVFNGPDEQFLGGRLMGASAGIGGTYGAMPE LFLRLNQLIKDKDLETAKALQYAINDIIGLLVSAHGNMYGVIKEVLRINERLDIGSVR SPLPELTENDLVICQQAAALIKQTKEQFCS" misc_feature 308766..309653 /locus_tag="SEQ_0326" /inference="protein motif:PFAM:PF00701" /note="HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 8e-35" misc_feature 308769..308801 /locus_tag="SEQ_0326" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 309686..310570 /locus_tag="SEQ_0327" /db_xref="GeneID:7697345" CDS 309686..310570 /locus_tag="SEQ_0327" /codon_start=1 /transl_table=11 /product="ROK family protein" /protein_id="YP_002745727.1" /db_xref="GI:225869780" /db_xref="GeneID:7697345" /translation="MKRYLAIDIGGTAIKYGLMTETADILEKHEIATEAHKGGPAILD KVKDLVATYQEAGLAGVAISSAGMVDPDKGEIFYAGPQIPNYAGTQFKRVIEETFGIP CDVENDVNCAGLAEAISGSAKDCPVALCLTIGTGIGGCLLIDSQVFHGSSYSACEVGY IHLPDGAFQDLASTTALVRDVARRHGDAVSDWNGRRIFEEAKAGNHHCIAAIDQLVDY LAQGLANICYVANPNAIVLGGGIMAQKDYLQDKILAALNNYLVPSIAEKTQLRFASHE NNAGMIGAYYHFKHKEQV" misc_feature 309701..310216 /locus_tag="SEQ_0327" /inference="protein motif:PFAM:PF00480" /note="HMMPfam hit to PF00480, ROK family, score 8.8e-27" misc_feature 310073..310105 /locus_tag="SEQ_0327" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 310570..310857 /locus_tag="SEQ_0328" /pseudo /db_xref="GeneID:7697346" misc_feature 310570..310857 /locus_tag="SEQ_0328" /note="gene remnant. Similar to the N-terminal region of Streptococcus suis acetyl xylan esterase UniProt:Q8RR40 (EMBL:AB071365 (323 aa) fasta scores: E()=8.5e-20, 55.319% id in 94 aa" /pseudo /db_xref="PSEUDO:CAW92435.1" gene complement(310884..311708) /locus_tag="SEQ_0329" /db_xref="GeneID:7697347" CDS complement(310884..311708) /locus_tag="SEQ_0329" /codon_start=1 /transl_table=11 /product="transcription regulator" /protein_id="YP_002745728.1" /db_xref="GI:225869781" /db_xref="GeneID:7697347" /translation="MIHNHRLISKMEAALDSMTSLEKSIAQFFMETDLKVEELTASDM IKRLHVSQAALTRFAKKCGFTGYREFIFECQKSREAMDQKAPNLQNYNTKKVLMNYRE LIEKATELINEKQLQDIAQWIENAERIYFYGKGSSALAAKEFKLRLMRLGVICEALDD TDSFTWVNSSITDKCLVIGFSLSAQTASVLEALQTAGTRGAKTVLLTTQTDEIPYQLD EIVHIATARHLNYGNRISPQFPMLFVTDIIYAYFLEINKEGKTKIFQETIINPSDK" misc_feature complement(310947..311351) /locus_tag="SEQ_0329" /inference="protein motif:PFAM:PF01380" /note="HMMPfam hit to PF01380, SIS domain, score 1.9e-11" misc_feature complement(311352..311696) /locus_tag="SEQ_0329" /inference="protein motif:PFAM:PF01418" /note="HMMPfam hit to PF01418, Helix-turn-helix domain, rpiR family, score 0.0006" gene 311937..312710 /locus_tag="SEQ_0330" /db_xref="GeneID:7697348" CDS 311937..312710 /locus_tag="SEQ_0330" /codon_start=1 /transl_table=11 /product="TatD related DNase" /protein_id="YP_002745729.1" /db_xref="GI:225869782" /db_xref="GeneID:7697348" /translation="MIEIFDTHTHLNVDHFSGKEEEELALAKEFGVSYHNVVGFDQET IDQALTLADAYREVYATIGWHPTEAGSYTQAVEDSLIACLKHPKVVALGEIGLDYYWM EDPKEVQIEVFKRQLQLAKDHDLPFVVHTRDALEDTYQVLKEAGVGPRGGIMHSYSGS LEMAQRFVDLGMLISFSGVVTFKKAVDVQEAARHLPLDKLLVETDAPYLAPVPKRGRE NHTAYTRYVVEKIAELRGLSVEEIAAATTANAKRVFRID" misc_feature 311940..312701 /locus_tag="SEQ_0330" /inference="protein motif:PFAM:PF01026" /note="HMMPfam hit to PF01026, TatD related DNase, score 1.8e-122" misc_feature 311946..311972 /locus_tag="SEQ_0330" /inference="protein motif:Prosite:PS01137" /note="PS01137 Uncharacterized protein family UPF0006 signature 1." misc_feature 312507..312557 /locus_tag="SEQ_0330" /inference="protein motif:Prosite:PS01091" /note="PS01091 Uncharacterized protein family UPF0006 signature 3." gene 312682..313278 /locus_tag="SEQ_0331" /db_xref="GeneID:7697349" CDS 312682..313278 /locus_tag="SEQ_0331" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745730.1" /db_xref="GI:225869783" /db_xref="GeneID:7697349" /translation="MQRGCLELTEKLKIQEVIVVEGKDDTANLQRFYDVDTYETKGSA ITDEDLERIDRLNKLRGVIVFTDPDYHGERIRKLIMRAVPTARHAFLRRHEAKPRSKS KGRSLGVEHASFEDLQKALSQVTQSFDDESYFDISQTDLIRLGLLLAADSRKRREYLG EVLRIGYSNGKQLLKRLKLFGITLSEVEDVMTSYQTEQ" misc_feature 312724..312957 /locus_tag="SEQ_0331" /inference="protein motif:PFAM:PF01751" /note="HMMPfam hit to PF01751, Toprim domain, score 2.7e-07" gene 313622..314494 /gene="ksgA" /locus_tag="SEQ_0332" /db_xref="GeneID:7697350" CDS 313622..314494 /gene="ksgA" /locus_tag="SEQ_0332" /codon_start=1 /transl_table=11 /product="dimethyladenosine transferase" /protein_id="YP_002745731.1" /db_xref="GI:225869784" /db_xref="GeneID:7697350" /translation="MRIADYSVTKSILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEI DKSVNVIEIGPGIGALTEFLAERAAEVMAFEIDERLVPILADTLRDFDNVQVVNQDIL KADLQTQLKQFSNPDLPIKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRI SAEPNTKAYGSLSIAVQYYMTAKIAFVVPRTVFVPAPNVDSAILKMTRRDQPLIEVQD EDFFFRVSRVGFVHRRKTLWNNLVSHFGKAEDTKARLEQGLALAGIKPSIRGEALSIQ DFGRLADALKQVGF" misc_feature 313670..314452 /gene="ksgA" /locus_tag="SEQ_0332" /inference="protein motif:PFAM:PF00398" /note="HMMPfam hit to PF00398, Ribosomal RNA adenine dimethylase, score 7.8e-77" misc_feature 313769..313852 /gene="ksgA" /locus_tag="SEQ_0332" /inference="protein motif:Prosite:PS01131" /note="PS01131 Ribosomal RNA adenine dimethylases signature." gene 314655..315527 /locus_tag="SEQ_0333" /db_xref="GeneID:7697351" CDS 314655..315527 /locus_tag="SEQ_0333" /codon_start=1 /transl_table=11 /product="GTPase EngC" /protein_id="YP_002745732.1" /db_xref="GI:225869785" /db_xref="GeneID:7697351" /translation="MQGKIIKALAGFYYVESEGQVYQTRARGNFRKRGQTPYVGDLVE FSAEDNSEGYILAIAERKNSLVRPPIVNIDQAAVIMSAKEPDFNTNLLDRFLILLEHK AIHPIIYISKIDLLEQPESIEAIGQHYRAIGYDFVTSLSHLLPLLAGKTTVFMGQTGV GKSTLLNRIAPELALETGDISDSLGRGRHTTRAVSFYDAYNGKIADTPGFSSLDYGID NAEDLNEAFPELRRLSHSCKFRSCTHTHEPKCAVKEALGNGELWSVRYQNYLQFLSEI ENRRETYQKVSKRK" misc_feature 314658..315476 /locus_tag="SEQ_0333" /inference="protein motif:PFAM:PF03193" /note="HMMPfam hit to PF03193, Protein of unknown function, DUF258, score 9.8e-153" misc_feature 315120..315143 /locus_tag="SEQ_0333" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 315536..316198 /locus_tag="SEQ_0334" /db_xref="GeneID:7697352" CDS 315536..316198 /locus_tag="SEQ_0334" /EC_number="5.1.3.1" /codon_start=1 /transl_table=11 /product="ribulose-phosphate 3-epimerase" /protein_id="YP_002745733.1" /db_xref="GI:225869786" /db_xref="GeneID:7697352" /translation="MSSLKIAPSILAADYACFAAELARIEKTDAEYVHIDIMDGQFVP NISFGADVVASMRKHSKLVFDCHLMVVNPERYVEAFAQAGADIMTIHVESTLHSHGAL QKIRAAGMKAGVVINPGTPVSAVEPLLSLVDQVLIMTVNPGFGGQAFIPECLEKVAAI AKMRDERGLSFDIEVDGGVDDKTIRACYQAGANVFVAGSYLFKAADLAAQVQTLRAAL NG" misc_feature 315548..316150 /locus_tag="SEQ_0334" /inference="protein motif:PFAM:PF00834" /note="HMMPfam hit to PF00834, Ribulose-phosphate 3 epimerase family, score 1.6e-107" misc_feature 315557..316177 /locus_tag="SEQ_0334" /inference="protein motif:PFAM:PF00215" /note="HMMPfam hit to PF00215, Orotidine 5'-phosphate decarboxylase /, score 0.002" misc_feature 315632..315676 /locus_tag="SEQ_0334" /inference="protein motif:Prosite:PS01085" /note="PS01085 Ribulose-phosphate 3-epimerase family signature 1." misc_feature 315938..316006 /locus_tag="SEQ_0334" /inference="protein motif:Prosite:PS01086" /note="PS01086 Ribulose-phosphate 3-epimerase family signature 2." gene 316191..316823 /locus_tag="SEQ_0335" /db_xref="GeneID:7697353" CDS 316191..316823 /locus_tag="SEQ_0335" /EC_number="2.7.6.2" /codon_start=1 /transl_table=11 /product="thiamin pyrophosphokinase" /protein_id="YP_002745734.1" /db_xref="GI:225869787" /db_xref="GeneID:7697353" /translation="MVKVALFAGGDLSYFTCDFDYFVGIDRGSLFLLENGLPLNMAVG DFDSIPQVAFEVVKEQAELLVQASPEKNDTDTELALKEVFTRFPEAEVTIFGAFGGRL DHLLSNVFLPADPELAPFMAQICLRDQQNAISYRSSGWQTIRQDKDMTYVAFMADGDA DLTITGAKFDLTTSNFFKKKVYASNEFIDQPIKVHVPKGYLIIIQSKDRS" misc_feature 316212..316577 /locus_tag="SEQ_0335" /inference="protein motif:PFAM:PF04263" /note="HMMPfam hit to PF04263, Thiamin pyrophosphokinase, catalytic d, score 5.7e-43" misc_feature 316605..316799 /locus_tag="SEQ_0335" /inference="protein motif:PFAM:PF04265" /note="HMMPfam hit to PF04265, Thiamin pyrophosphokinase, vitamin B1, score 1.7e-19" gene 316825..318096 /locus_tag="SEQ_0336" /db_xref="GeneID:7697354" CDS 316825..318096 /locus_tag="SEQ_0336" /codon_start=1 /transl_table=11 /product="RmuC family protein" /protein_id="YP_002745735.1" /db_xref="GI:225869788" /db_xref="GeneID:7697354" /translation="MDLILFVLVLVLIGLAAYSFVSIKHLQSRLEKALDDNADNLSDQ LTYQLDMANKSQLLELSTVMNRQQNELFQQLMVIRDTLHQGLAENRDRSDQRLETMTQ SLSQAVKNLQDSNEKRLEEMRHTVEEKLEKTLKNRLQTSFEAVSKQLESVNQGLGEMR TVAKDVGTLNKVLSNTKTRGILGELQLGQIVEDIMTANQYEREFATVSGSSDRVEYAI KLPGNGQGDYIYLPIDSKFPLEDYYRLEDAYEAGDRAAIETSRKALLAAIKRFAKSIH SKYLNPPETTNFGIMFLPTEGLYSEVVRNPAFFDSLRREENIVVAGPSTLSALLNSLS VGFKTLNLQKNADDISKILGNVKLEFEKFGGLLAKAQKQLNTANHTLDQLMSTRTKAI VRALATVEGYQDQSTQSLLHIPLLEEADDED" misc_feature 316831..316890 /locus_tag="SEQ_0336" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0336 by TMHMM2.0 at aa 3-22" misc_feature 317170..318072 /locus_tag="SEQ_0336" /inference="protein motif:PFAM:PF02646" /note="HMMPfam hit to PF02646, RmuC family, score 5.7e-138" gene 318086..319024 /locus_tag="SEQ_0337" /db_xref="GeneID:7697355" CDS 318086..319024 /locus_tag="SEQ_0337" /codon_start=1 /transl_table=11 /product="3'-5' exoribonuclease" /protein_id="YP_002745736.1" /db_xref="GI:225869789" /db_xref="GeneID:7697355" /translation="MKINQMKKDQPFEGFYLIKSAEVRKTRAGKDFIAFTFQDDTGEI SGNLWDAQPYNVEEFVAGKIVFMKGRREVYNGTPQVNQITLRNIRPGEPNDPKEFKEK APVSVTEVRDYLDQMLFKIENATWQRIVRALYRKYDKEFFTYPAAKTNHHAFESGLAY HTATMVRLADSIGDIYPELNKSLLFAGIMLHDLAKVLELTGPDNTEYTIRGNLIGHIA LINEEITKTITELNIDDNKEEVTVLRHVILSHHGQLEYGSPVRPRIMEAEIIHMIDNI DANMMMMSTALSRIGEGEMTNRIFAMDNRSFYKPKY" misc_feature 318131..318343 /locus_tag="SEQ_0337" /inference="protein motif:PFAM:PF01336" /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 0.0052" misc_feature 318557..318922 /locus_tag="SEQ_0337" /inference="protein motif:PFAM:PF01966" /note="HMMPfam hit to PF01966, HD domain, score 4e-05" gene 319124..319939 /locus_tag="SEQ_0338" /db_xref="GeneID:7697356" CDS 319124..319939 /locus_tag="SEQ_0338" /codon_start=1 /transl_table=11 /product="pur operon repressor" /protein_id="YP_002745737.1" /db_xref="GI:225869790" /db_xref="GeneID:7697356" /translation="MKLRRSERMVVISNYLINNPYKLTSLNTFATKYEAAKSSISEDI AIIKKAFEESNIGEIDTLTGASGGVIFTPSISEAEARSIVEELCQRLSESNRILPGGY IYLSDLLSTPKLLQNIGRIIANAFKGQKIDAVMTVATKGVPLANAVANILNVPFVIVR RDLKITEGSTVSVNYASASSYRIEKMFLSKRSLKPNSRVLIVDDFLKGGGTITGMMSL LTEFDSTLVGVAVFAENAQSEREQMSFKSLLKVSEIDVKNNRVVVEVGNIFDK" misc_feature 319433..319849 /locus_tag="SEQ_0338" /inference="protein motif:PFAM:PF00156" /note="HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 6.1e-17" gene 319976..322480 /locus_tag="SEQ_0339" /db_xref="GeneID:7697357" CDS 319976..322480 /locus_tag="SEQ_0339" /codon_start=1 /transl_table=11 /product="membrane anchored protein" /protein_id="YP_002745738.1" /db_xref="GI:225869791" /db_xref="GeneID:7697357" /translation="MEQENSRTKHVKSTIALTSTIALLGTSVGVSHQVKADDAKSGDA NTSNTSEATLAKPETLEEAVLAVKATEETLSERKKELAETNTNIAETEGEIANLEATK KEQIAELAKAEELLETYSSMSEEDLAKSIEKHETELETINTELEKATTESQAQAEAVA KQQETIAAEATKADQLATQLTAAEQKVSDLNTMISQPEAIVSEAQAAKEEVKRISDDL AKATANLATVKETVHSQLTSDLAANKAALAAKEAELQRLQNGVATAQLNVAGSNKLIL PKDYPIEEIKKLAASGYIGTAAYNQYYQAVKDTMIAKAEPGAAMNQYVDIPEDLNRVV DPDNLSQEVQNELAQFAAQMINDVRKQLGLVPVTVTVGSQEFARLLTKSYKETHQNTR PSFVYGQVDASGHRGVGPHDQTIIEESAVKVGLRQKDDNMYENLGAFNEVHTVNGIKR GIYDSIKYMLFTDHLHGNTYGHAVNFLRVDKTDPNAPVYLGFSTSNVESLNEHFVIFP ESDIVDATRFSTTEIPKSGQVIDRSASIQALTNDIASIKGKIASLESRLADPSSEAEV TAAQAKISQLQHQLEAAQAKSHKLDQQVEQLANTKDSLRTQLLAAKEEQAQLKANLDK ALALLASSKATLHKLEAAMEEAKARVAGLASQKAQLEDLLAFEKNPNRIELAQEKVAA AKKALADTEDKLLAAQASLSDLQAQRARLQLSIATIEQQLVLLKNLVQEKQRLRLEAE RLNSMSETRQLLNQLAPQAAKAGVGSELVATGLLVSKVASAIAKQSPTSHSYGAGAAS HAAVDDNTQRAVQAGMVMLAAAGLATVKLKKGSKKR" sig_peptide 319976..320083 /locus_tag="SEQ_0339" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0339 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.974 between residues 36 and 37" gene 322663..323076 /gene="rpsL" /locus_tag="SEQ_0340" /db_xref="GeneID:7697358" CDS 322663..323076 /gene="rpsL" /locus_tag="SEQ_0340" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S12" /protein_id="YP_002745739.1" /db_xref="GI:225869792" /db_xref="GeneID:7697358" /translation="MPTINQLVRKPRKSKIEKSDSPALNIGYNSHKKVHTKLAAPQKR GVATRVGTMTPKKPNSALRKFARVRLSNLIEVTAYIPGIGHNLQEHSVVLIRGGRVKD LPGVRYHIVRGALDTAGVADRKQGRSKYGAKRPKG" misc_feature 322666..323070 /gene="rpsL" /locus_tag="SEQ_0340" /inference="protein motif:PFAM:PF00164" /note="HMMPfam hit to PF00164, Ribosomal protein S12, score 1e-64" misc_feature 322828..322851 /gene="rpsL" /locus_tag="SEQ_0340" /inference="protein motif:Prosite:PS00055" /note="PS00055 Ribosomal protein S12 signature." gene 323097..323567 /locus_tag="SEQ_0341" /db_xref="GeneID:7697359" CDS 323097..323567 /locus_tag="SEQ_0341" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S7" /protein_id="YP_002745740.1" /db_xref="GI:225869793" /db_xref="GeneID:7697359" /translation="MSRKNRAPKREVLPDPLYNSKLVTRLINRIMLDGKRGTASSIVY DAFSEIKEATGNDALEVFETAMDNIMPVLEVRARRVGGSNYQVPVEVRPERRTTLGLR WLVTASRARGEHTMKDRLAKEIMDAANNTGASVKKREDTHKMAEANRAFAHFRW" misc_feature 323097..323543 /locus_tag="SEQ_0341" /inference="protein motif:PFAM:PF00177" /note="HMMPfam hit to PF00177, Ribosomal protein S7p/S5e, score 2e-81" misc_feature 323154..323234 /locus_tag="SEQ_0341" /inference="protein motif:Prosite:PS00052" /note="PS00052 Ribosomal protein S7 signature." gene complement(323815..323991) /locus_tag="SEQ_0343" /db_xref="GeneID:7697360" CDS complement(323815..323991) /locus_tag="SEQ_0343" /note="Doubtful CDS" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745741.1" /db_xref="GI:225869794" /db_xref="GeneID:7697360" /translation="MQTKTRLKSNPIKTITHLEGENFLLKSCSLCLYILIVTEFELQV TDKKDNRSVCLELA" gene 324110..326188 /locus_tag="SEQ_0344" /db_xref="GeneID:7697361" CDS 324110..326188 /locus_tag="SEQ_0344" /codon_start=1 /transl_table=11 /product="elongation factor G (EF-G)" /protein_id="YP_002745742.1" /db_xref="GI:225869795" /db_xref="GeneID:7697361" /translation="MAREFSLAKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETH EGASQMDWMEQEQERGITITSAATTAQWDGHRVNIIDTPGHVDFTIEVQRSLRVLDGA VTVLDSQSGVEPQTETVWRQATEYGVPRIVFANKMDKIGADFLYSVQTLHDRLQANAH PIQLPIGSEDDFRGIIDLIKMKAEIYTNDLGTDILEEDIPEEYLEQAQEYREKLIEAV AETDEDLMMKYLEGEEITNEELVAGIRKATINVEFFPVLCGSAFKNKGVQLMLDAVIA YLPSPLDIPAIKGVNPDTDAEEERPASDEEPFAALAFKIMTDPFVGRLTFFRVYSGVL NSGSYVMNTSKGKRERIGRILQMHANSRQEIETVYAGDIAAAVGLKDTTTGDSLTDEK AKIILESIEVPEPVIQLMVEPKSKADQDKMGIALQKLAEEDPTFRVETNVETGETVIA GMGELHLDVLVDRMRREFKVEANVGAPQVSYRETFRASTQARGFFKRQSGGKGQFGDV WIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGLIESMANGVLAGYPMVDVKAKLY DGSYHDVDSSETAFKIAASLALKEAAKTAQPAILEPMMLVTITAPEDNLGDVMGHVTA RRGRVDGMEAHGTSQIVRAYVPLAEMFGYATVLRSATQGRGTFMMVFDHYEDVPKSVQ EEIIKKNKGE" misc_feature 324131..324955 /locus_tag="SEQ_0344" /inference="protein motif:PFAM:PF00009" /note="HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 7.1e-113" misc_feature 324158..324181 /locus_tag="SEQ_0344" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 324260..324307 /locus_tag="SEQ_0344" /inference="protein motif:Prosite:PS00301" /note="PS00301 GTP-binding elongation factors signature." misc_feature 325073..325276 /locus_tag="SEQ_0344" /inference="protein motif:PFAM:PF03144" /note="HMMPfam hit to PF03144, Elongation factor Tu domain, score 2.3e-18" misc_feature 325538..325897 /locus_tag="SEQ_0344" /inference="protein motif:PFAM:PF03764" /note="HMMPfam hit to PF03764, Elongation factor G, domain IV, score 5.7e-67" misc_feature 325901..326164 /locus_tag="SEQ_0344" /inference="protein motif:PFAM:PF00679" /note="HMMPfam hit to PF00679, Elongation factor G C-terminus, score 1e-46" gene 326542..327579 /locus_tag="SEQ_0345" /db_xref="GeneID:7697362" CDS 326542..327579 /locus_tag="SEQ_0345" /EC_number="1.2.1.12" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase" /protein_id="YP_002745743.1" /db_xref="GI:225869796" /db_xref="GeneID:7697362" /translation="MIFIRRKSLMVVKVGINGFGRIGRLAFRLIQNVEGVEVTRINDL TDPAMLAHLLKYDSTQGRFDGDVEVVEGGCNVNGKFVKVSAEANPENIDWASQEVDIV LEATGFFASKAGAEKHLHANGAKKVVITAPGGNDVKTVVFNTNHEILDGTETVISGAS CTTNCLAPMAKVLQDKFGVVEGLMTTIHGYTGDQMTLDAPHRKGDFRRARAAAVNIVP NSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVSVLEKDVTADEVNAAMKAAA NDSFGYTEDQIVSSDVVGIHYGSLFDATQTKVLTVDGKQLVKTVSWYDNEMSYTAQLV RTLEYFAKIAK" misc_feature 326575..327024 /locus_tag="SEQ_0345" /inference="protein motif:PFAM:PF00044" /note="HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate dehydrogenase, NA, score 1.5e-78" misc_feature 327016..327039 /locus_tag="SEQ_0345" /inference="protein motif:Prosite:PS00071" /note="PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site." misc_feature 327037..327510 /locus_tag="SEQ_0345" /inference="protein motif:PFAM:PF02800" /note="HMMPfam hit to PF02800, Glyceraldehyde 3-phosphate dehydrogenase, C-, score 2.5e-99" gene 328123..328977 /gene="lppC" /locus_tag="SEQ_0346" /db_xref="GeneID:7697363" CDS 328123..328977 /gene="lppC" /locus_tag="SEQ_0346" /codon_start=1 /transl_table=11 /product="acid phosphatase precursor" /protein_id="YP_002745744.1" /db_xref="GI:225869797" /db_xref="GeneID:7697363" /translation="MTSKKILNLVSLGLSLVLISGCTTNGEKKAAPSQDKDKQEKVVR LTNDQLRARENTMATLWYQQSEEAKALYLQGYQVAKQRLDTLLSQATDKPYSIVLDID ETVLDNSPYQAKNIKEGTGFTPDSWDKWVQKKSAKAVAGAKDFLQYANDKGVQIYYVS DRTTKQVEPTMENLEKEGIPVQGKDHFLFLEEGVKSKEGRRQKVQETTNLVLLFGDNL LDFAEFSKTSHEDRRKLLDQLHAEFGSKFIIFPNPMYGSWESSVYNGQKLDSEGQIKA RDKALEAY" sig_peptide 328123..328209 /gene="lppC" /locus_tag="SEQ_0346" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0346 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.685 between residues 29 and 30" misc_feature 328156..328188 /gene="lppC" /locus_tag="SEQ_0346" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 329187..330383 /gene="pgk" /locus_tag="SEQ_0347" /db_xref="GeneID:7696941" CDS 329187..330383 /gene="pgk" /locus_tag="SEQ_0347" /EC_number="2.7.2.3" /codon_start=1 /transl_table=11 /product="phosphoglycerate kinase" /protein_id="YP_002745745.1" /db_xref="GI:225869798" /db_xref="GeneID:7696941" /translation="MAKLTVKDLDLKGKKVLVRVDFNVPLKNGVITNDNRISAALPTI KYIIEHGGRAILFSHLGRVKEEADKEGKSLAPVAKNLAEKLGQEVIFPGSTRGAELEA AIDALEDGQVLLVENTRFEDIDGKKESKNDPELGKYWASLGEGIFVNDAFGTAHRAHA SNVGISANVEKAVAGFLLENEIAYIKEAVETPERPFVAILGGSKVSDKIGVIENLLEK ADKVLIGGGMTYTFYKAQGIEIGNSLCEEDKLDVAKSLLEKSNGKLVLPVDSKEANAF ADYTEVKVTEGEAVDTGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDFQEG TIGVMDAIVKQPGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKELPGL AALTEK" misc_feature 329187..330371 /gene="pgk" /locus_tag="SEQ_0347" /inference="protein motif:PFAM:PF00162" /note="HMMPfam hit to PF00162, Phosphoglycerate kinase, score 1.4e-179" misc_feature 329229..329261 /gene="pgk" /locus_tag="SEQ_0347" /inference="protein motif:Prosite:PS00111" /note="PS00111 Phosphoglycerate kinase signature." gene 330806..331327 /locus_tag="SEQ_0349" /db_xref="GeneID:7697364" CDS 330806..331327 /locus_tag="SEQ_0349" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745746.1" /db_xref="GI:225869799" /db_xref="GeneID:7697364" /translation="MNYHFDASKLKLGMRTFKTGLAVFFVLLLFHFFDFQGLQIGALT AVFSLRESFDKTISFGTSRILGNSIGGFFAIIFYLLDTLFQGAFWVTLVFVPILTMLT IMFNVAFNNQSGIIGAVAALLIITLSIPTGEAFMYVIARVFETFCGVFIAILVNTDVE LIRNKWLSRKLKK" misc_feature join(330866..330934,330977..331045,331064..331132, 331145..331213) /locus_tag="SEQ_0349" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0349 by TMHMM2.0 at aa 21-43, 58-80, 87-109 and 114-136" gene 331403..331774 /locus_tag="SEQ_0350" /db_xref="GeneID:7697365" CDS 331403..331774 /locus_tag="SEQ_0350" /codon_start=1 /transl_table=11 /product="MerR family regulatory protein" /protein_id="YP_002745747.1" /db_xref="GI:225869800" /db_xref="GeneID:7697365" /translation="MKEKELRRSMAVFPIGAVMTLTDLSARQIRYYEDQELIKPERTE GNRRLFSLNDMDRLLEIKDFLDEGLNIAAIKREYAERQDKLMQKQKVLTDADVRRILH DELLNQGGFSTPSQHIGNFRI" misc_feature 331442..331552 /locus_tag="SEQ_0350" /inference="protein motif:PFAM:PF00376" /note="HMMPfam hit to PF00376, MerR family regulatory protein, score 4.5e-10" gene 331811..333157 /locus_tag="SEQ_0351" /db_xref="GeneID:7697366" CDS 331811..333157 /locus_tag="SEQ_0351" /EC_number="6.3.1.2" /codon_start=1 /transl_table=11 /product="glutamine synthetase" /protein_id="YP_002745748.1" /db_xref="GI:225869801" /db_xref="GeneID:7697366" /translation="MAITAADVRREVKEKHVTFLRLMFTDIMGVMKNVEIPATEEQLD KVLSNKVMFDGSSIEGFVRINESDMYLYPDLDTWIVFPWGDENGTVGGLICDIYTAEG KPFAGDPRGNLKRALKHMDEVGYQSFNLGPEPEFFLFKIDEAGEPTLEVNDKGGYFDL APIDLADNTRREIVNVLTKMGFEVEASHHEVAVGQHEIDFKYADALKACDNIQIFKLV VKTIAREHGLYATFMAKPKFGIAGSGMHCNMSLFDKGGNNAFYDENDKRGMKLSDDAY YFLGGLMKHAYNYTAITNPTVNSYKRLVPGYEAPVYVAWAGSNRSPLIRVPASRGMGT RLELRSVDPTANPYLALAVLLEAGLDGIINKIEAPAPIEANIYMMTAEERNAAGIVDL PSTLHNALKALQKDEVIQKALGDHIYTNFLEAKRIEWSSYATFVSQWEIDNYLHNY" misc_feature 331856..332110 /locus_tag="SEQ_0351" /inference="protein motif:PFAM:PF03951" /note="HMMPfam hit to PF03951, Glutamine synthetase, beta-Grasp domain, score 3e-14" misc_feature 331967..332023 /locus_tag="SEQ_0351" /inference="protein motif:Prosite:PS00180" /note="PS00180 Glutamine synthetase signature 1." misc_feature 332126..332896 /locus_tag="SEQ_0351" /inference="protein motif:PFAM:PF00120" /note="HMMPfam hit to PF00120, Glutamine synthetase, catalytic domain, score 2.2e-152" gene 333390..335048 /locus_tag="SEQ_0352" /db_xref="GeneID:7697367" CDS 333390..335048 /locus_tag="SEQ_0352" /codon_start=1 /transl_table=11 /product="peptide binding protein" /protein_id="YP_002745749.1" /db_xref="GI:225869802" /db_xref="GeneID:7697367" /translation="MTVLGTKACKRLGLAAVTLASVAALMACGNKQSASTDKKSEINW YTPTEIITLDISKNTDTYSALAIGNSGSNLLRADAKGKLQPDLAEKVDVSEDGLTYTA TLRDGLKWSDGSDLTAEDFVYSWQRMVDPKTASEYAYLATESHLKNAEDINSGKNPDL DSLGVKADGNKVIFTLTEPAPQFKSLLSFSNFVPQKESFVKDAGKDYGTTSEKQIYSG PYIVKDWNGTSGTFKLVKNKNYWDAKNVKTETVNVQTVKKPDTAVQMYKQGKLDFANI SGTSAIYNANKKHKDVVPVLEATTAYIVYNQTGAIEGLNSLKIRQALNLATDRKGIVS AAVDTGSKPATALVPTGLAKLSDGTDLTEHVAPGYKYDDKEAAKLFKEGLAELGKDAL TITITADADAPAAKSAVDYIKETWETALPGLTVEEKFVPFKQRLEDTKNQNFEVAVVL WGGDYPKGSTFYGLFKSGSAYNYGKFTNADYDAAYNKALTTDALNTDAAADDYKAAEK ALYDNALYNPLYFRSGEGLQNPSIKGLIRNSTGLNVDFTYAYKD" sig_peptide 333390..333497 /locus_tag="SEQ_0352" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0352 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.513 between residues 36 and 37" misc_feature 333441..333473 /locus_tag="SEQ_0352" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 333633..334808 /locus_tag="SEQ_0352" /inference="protein motif:PFAM:PF00496" /note="HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 2.8e-76" gene 335217..336131 /locus_tag="SEQ_0353" /db_xref="GeneID:7697368" CDS 335217..336131 /locus_tag="SEQ_0353" /codon_start=1 /transl_table=11 /product="di-tripeptide transport system permease protein" /protein_id="YP_002745750.1" /db_xref="GI:225869803" /db_xref="GeneID:7697368" /translation="MIKYLLKRVAILVVTLWVVITLSFFLMQVMPGTPYNSPKLTDDM IAMLNQQYGLDKPLWQQYLKYLFDILHGDFGTSYQSINQSVTTLISQRLGVSVHLGVQ ALIVGISSGLAVGAVSARNKNNSIDAILSVISTLGISMPSFIIGLLLLDYLGFKWNLL PLSGWGSFGQTILPTLALAIPVFAQVTRFFRSEMIETLSTDYIQLARAKGLTKRQVTR RHAYRNSMIPVLTLVGPMAAGILTGSALIEQIFSIPGIGQQFVTSIPTKDYPVIMGTT IVYALMLMVAILATDMIISIADPRVRLG" sig_peptide 335217..335324 /locus_tag="SEQ_0353" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0353 by SignalP 2.0 HMM (Signal peptide probability 0.966) with cleavage site probability 0.421 between residues 36 and 37" misc_feature join(335241..335309,335496..335564,335598..335666, 335709..335768,335889..335957,336039..336107) /locus_tag="SEQ_0353" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0353 by TMHMM2.0 at aa 9-31, 94-116, 128-150, 165-184, 225-247 and 275-297" misc_feature 335493..336125 /locus_tag="SEQ_0353" /inference="protein motif:PFAM:PF00528" /note="HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 4.5e-49" misc_feature 335814..335879 /locus_tag="SEQ_0353" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1106.000, SD 2.95 at aa 200-221, sequence TDYIQLARAKGLTKRQVTRRHA" gene 336141..337172 /locus_tag="SEQ_0354" /db_xref="GeneID:7697369" CDS 336141..337172 /locus_tag="SEQ_0354" /codon_start=1 /transl_table=11 /product="di-tripeptide transporter permease protein" /protein_id="YP_002745751.1" /db_xref="GI:225869804" /db_xref="GeneID:7697369" /translation="MLEETKSFKLVGAGSLATQEKIEKPALSFLQDAWRRLKHNKLAV IAMGFLAVLLLFSIGSLFVVSTDDANSFNSKEVSIYRNLPPKLSSSLPFWNGTITYAG NTEPNDAYADQGVPEDKAFLLGTDNLGRSIGKRITVGIRISLLIAIVATLIDLVIGVT YGLVSGFVGGKTDMVMQRIIEIISSIPNLVIVTMLGLLLGNGVTSIIISIAIVGWTSM ARQVRNLTLSYRERDFVLASRALGESNIRIAFKHVLPNISGIIIVQIMMTVPSAIMYE SVLSAINLGVKPPTASIGSLITDAQESLQYYPYQVLLPAFALVLISLAFILLGDGLRD AFDPKSSDE" misc_feature join(336264..336332,336564..336632,336711..336779, 336897..336965,337059..337127) /locus_tag="SEQ_0354" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0354 by TMHMM2.0 at aa 42-64, 142-164, 191-213, 253-275 and 307-329" misc_feature 336558..337166 /locus_tag="SEQ_0354" /inference="protein motif:PFAM:PF00528" /note="HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.6e-44" gene 337184..338230 /locus_tag="SEQ_0355" /db_xref="GeneID:7697370" CDS 337184..338230 /locus_tag="SEQ_0355" /codon_start=1 /transl_table=11 /product="di-tripeptide transporter ATP-binding protein" /protein_id="YP_002745752.1" /db_xref="GI:225869805" /db_xref="GeneID:7697370" /translation="MTNETILSVKNLHVDFKTYAGDVKAIRDISFELKKGETLAIVGE SGSGKSVTTRTLMGLNAKNASISGNICFKGKQLNELKEEEWVKVRGNEIAMIFQDPMT SLDPTMTIGMQIAEAIMIHQSIHKTEALKRALDLMRQVGIPNAEEHLKDYPHQWSGGM RQRAVIAIALAANPDILIADEPTTALDVTIQAQILKLMKDIQSQTASSIIFITHDLGV VAGMVDRVAVMYAGKIVEYGTVDEVFYHPQHPYTWGLLNSMPTTATAAGSLRSIPGTP PDLLNPPKGDAFAARNEFALDIDHIKEPPMFKVSDSHYAATWLLDERAPKITPPFPIR KRWAKWQEMEERKA" misc_feature 337289..337879 /locus_tag="SEQ_0355" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 3.9e-56" misc_feature 337310..337333 /locus_tag="SEQ_0355" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 337886..338080 /locus_tag="SEQ_0355" /inference="protein motif:PFAM:PF08352" /note="HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 2.2e-27" gene 338230..339165 /locus_tag="SEQ_0356" /db_xref="GeneID:7697371" CDS 338230..339165 /locus_tag="SEQ_0356" /codon_start=1 /transl_table=11 /product="di-tripeptide transporter ATP-binding protein" /protein_id="YP_002745753.1" /db_xref="GI:225869806" /db_xref="GeneID:7697371" /translation="MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGL VGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQLKGKKLHSFRKHAQMIFQDPQAS LNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQNHLTRYPHEFSGGQRQ RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVK YISDRIGVMHWGKMLEIGTSDEVYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPS QELDGQERQMHEITPGHFVLATQAEAEQYRAECGL" misc_feature 338344..338919 /locus_tag="SEQ_0356" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 2.2e-61" misc_feature 338365..338388 /locus_tag="SEQ_0356" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 338689..338733 /locus_tag="SEQ_0356" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." misc_feature 338926..339150 /locus_tag="SEQ_0356" /inference="protein motif:PFAM:PF08352" /note="HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 2.3e-08" gene complement(339794..341476) /locus_tag="SEQ_0357" /db_xref="GeneID:7697372" CDS complement(339794..341476) /locus_tag="SEQ_0357" /codon_start=1 /transl_table=11 /product="metallo-beta-lactamase superfamily protein" /protein_id="YP_002745754.1" /db_xref="GI:225869807" /db_xref="GeneID:7697372" /translation="MTNISLRPNEVGVYAIGGLGEIGKNTYGIEYQDEIIIVDAGIKF PEDDLLGIDYVIPDYSYIVDNLERVKALVITHGHEDHIGGIPFLLKQANVPIYAGPLA LALIRGKLEEHGLLRDAVLYEINHNTELTFKHMSVTFFKTTHSIPEPLGIVIHTPQGK VICTGDFKFDFTPVGDPADLHRMAALGKDGVLCLLSDSTNAEIPTFTNSEKVVGQSIM NIIEGIHGRIIFASFASNIYRLQQAAEAAVKTGRKIAVFGRSMEKAIVNGIELGYIKV PKGTFIEPNEIKHYHASEILIMCTGSQGESMAALARIANGTHRQVSLQPGDTVIFSSS PIPGNTVSVNKLINTIQEAGVDVIHGKVNNIHTSGHGGQQEQKLMLSLIKPKYFMPVH GEYRMQKVHAGLAVDIGIPEENIFIMENGDVLALTSDSARIAGHFNAQDIYVDGNGIG DIGTAVLRDRRDLSEDGVVLAVATVDFETQMILAGPDILSRGFIYMRESGELIRESQR VLFNAIRIALKNKDASIQSVNGAIVNALRPFLYEKTEREPIIIPMVLTPDSQ" misc_feature complement(340289..340411) /locus_tag="SEQ_0357" /inference="protein motif:PFAM:PF07521" /note="HMMPfam hit to PF07521, RNA-metabolising metallo-beta-lactamase, score 1.4e-14" misc_feature complement(340295..340381) /locus_tag="SEQ_0357" /inference="protein motif:Prosite:PS01292" /note="PS01292 Uncharacterized protein family UPF0036 signature" gene complement(341478..341708) /locus_tag="SEQ_0358" /db_xref="GeneID:7697373" CDS complement(341478..341708) /locus_tag="SEQ_0358" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745755.1" /db_xref="GI:225869808" /db_xref="GeneID:7697373" /translation="MIYKVFYQETKERSPRRENTQALYLDIDAASELEGRIKARKMVE EHTDYNVEFIELLSDKHLDYEKETGVFTLTEF" misc_feature complement(341481..341705) /locus_tag="SEQ_0358" /inference="protein motif:PFAM:PF07288" /note="HMMPfam hit to PF07288, Protein of unknown function (DUF1447), score 5.9e-50" gene 341994..342692 /locus_tag="SEQ_0359" /db_xref="GeneID:7697374" CDS 341994..342692 /locus_tag="SEQ_0359" /codon_start=1 /transl_table=11 /product="glycoprotease family protein" /protein_id="YP_002745756.1" /db_xref="GI:225869809" /db_xref="GeneID:7697374" /translation="MKTLAFDTSNKALSVALLDDGTLLADLTINVKKNHSISLMPAID FLMSSADLKPKDLDRIVVAEGPGSYTGLRVATATAKMLAYSLSIDLVGVSSLYALAAS TCRENPDSLVVPLIDARRRHVYVGYYHHQKAVKQDKYASFDAVLAELVSCDHVIFVGE VEGFAEDIRSALPEAKIKPSLPSAFEVGLLGSSLSADNVAAFVPQYLKRVEAEENWLK THAAGDDSQYVKRV" misc_feature 342057..342641 /locus_tag="SEQ_0359" /inference="protein motif:PFAM:PF00814" /note="HMMPfam hit to PF00814, Glycoprotease family, score 2.3e-54" gene 342695..343120 /locus_tag="SEQ_0360" /db_xref="GeneID:7697375" CDS 342695..343120 /locus_tag="SEQ_0360" /codon_start=1 /transl_table=11 /product="acetyltransferase (GNAT) family protein" /protein_id="YP_002745757.1" /db_xref="GI:225869810" /db_xref="GeneID:7697375" /translation="MMSIQEKAAAVYQVLKEVYGQSPWTLKQIVSDMQQEHVDYFTFY HQETLLGFLAIQQLPGEMEITNLAVLPSYQGQGIASWLMGQLDGFEGVIFLEVRASNH RAQQLYLKHGFEVVGQRSNYYHDPIEAALIMRREGKNDR" misc_feature 342815..343036 /locus_tag="SEQ_0360" /inference="protein motif:PFAM:PF00583" /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 7.6e-15" gene 343110..344126 /locus_tag="SEQ_0361" /db_xref="GeneID:7697376" CDS 343110..344126 /locus_tag="SEQ_0361" /EC_number="3.4.24.57" /codon_start=1 /transl_table=11 /product="glycoprotease" /protein_id="YP_002745758.1" /db_xref="GI:225869811" /db_xref="GeneID:7697376" /translation="MTDRYILAVESSCDETSVAILKNDNVLLTNIIASQVESHKRFGG VVPEVASRHHVEVITTCFDDALKEAQLEASDLTAVAVTYGPGLVGALLVGLAAAKAFA WANDLPLIPVNHMAGHLMAAREQGELEYPLMALLVSGGHTELVYVTEPGEYHIVGETR DDAVGEAYDKVGRVMGLPYPAGREIDQLAHQGTDTYHFPRAMMKEDHLEFSFSGLKSA FINLHHNAQQKGEELVLEDLCASFQAAVLDILLAKTKKALKQYPSKMLVVAGGVAANQ GLRERLAEEITDIAVVIPPLRLCGDNAGMIALAAVVEYEKGHVAGLDLNAKPSLAFDS FHQQ" misc_feature 343185..344033 /locus_tag="SEQ_0361" /inference="protein motif:PFAM:PF00814" /note="HMMPfam hit to PF00814, Glycoprotease family, score 1.2e-76" gene 344193..345176 /locus_tag="SEQ_0362" /db_xref="GeneID:7697377" CDS 344193..345176 /locus_tag="SEQ_0362" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745759.1" /db_xref="GI:225869812" /db_xref="GeneID:7697377" /translation="MAVYIKEPRTLWLGASFVTTLGVSLLCAMIYIFSIEEKLQGVGI LVLGVIGFLAIVWLMSSPFILLLFLSFNGIRLIKREGLSFRNLLLIGSAVLLFVHPFI SRLLLESIGDSKLLRIMYETSDLLILYLLLIVSVYTISSMLNTFYFRKTKEDYIIVLG SGLNGDQVTPLLASRINKGIQIYQKNPGSKLIMSGGKGADELIAEGEAMCRYAIQQGI KSEDILVENQSRNTRENILLSKQLIPSGASFCLVTNRYHLFRALLLAKELALPCRCYG AKTKLYFSMNAFIREIVGYLQLKKKQHLLAMLILTVGYIAIRVVMIYMLHI" sig_peptide 344193..344294 /locus_tag="SEQ_0362" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0362 by SignalP 2.0 HMM (Signal peptide probability 0.740) with cleavage site probability 0.666 between residues 34 and 35" misc_feature join(344226..344294,344337..344405,344442..344510, 344568..344636,345102..345170) /locus_tag="SEQ_0362" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0362 by TMHMM2.0 at aa 12-34, 49-71, 84-106, 126-148 and 304-326" misc_feature 344646..345077 /locus_tag="SEQ_0362" /inference="protein motif:PFAM:PF02698" /note="HMMPfam hit to PF02698, DUF218 domain, score 7.9e-48" gene complement(345571..345840) /gene="rpsN" /locus_tag="SEQ_0363" /db_xref="GeneID:7697378" CDS complement(345571..345840) /gene="rpsN" /locus_tag="SEQ_0363" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S14" /protein_id="YP_002745760.1" /db_xref="GI:225869813" /db_xref="GeneID:7697378" /translation="MAKKSKIAKYHKQLQLIEQYADLRRELKAKGDYEALRKLPRDSN PNRLKNRDRIDGRPHAYMRKFGVSRINFRELAHKGQLPGITKASW" misc_feature complement(345577..345741) /gene="rpsN" /locus_tag="SEQ_0363" /inference="protein motif:PFAM:PF00253" /note="HMMPfam hit to PF00253, Ribosomal protein S14p/S29e, score 2.1e-17" gene complement(346034..347206) /locus_tag="SEQ_0364" /db_xref="GeneID:7697379" CDS complement(346034..347206) /locus_tag="SEQ_0364" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745761.1" /db_xref="GI:225869814" /db_xref="GeneID:7697379" /translation="MILYDTIIIGGGPAGMMAAISSSYYGYKTLLLDKNKRLGKKLAG TGGGRCNVTNSGSHDELIAGIPGNGRFLYSVFSQFDNHDIIAFFKENGVTLKEEDHGR MFPTTDQSKTIINALEQKIKSLGAQVLISTEIVSVKKRNNLFYLKSVDQTFSCERLIV ATGGKSYPSTGSTGFGYDIARHFNIAVTELEAAESPLLTDFPHKALQGISLADVTLSC GKHQITHDLLFTHFGLSGPAALRLSSFVKGGDIAELDLLPQTSAAELLSYLAQHREKA LKNALKTLMPERVADFLAKGYPEKGKQLTPTQTQELVNRIKQLPIPITGKISLAKSFV TKGGIDLKEINPKTLESKKVAGLYFAGEVLDVNAHTGGFNITAALCSGWVAGSSQS" misc_feature complement(346043..347197) /locus_tag="SEQ_0364" /inference="protein motif:PFAM:PF03486" /note="HMMPfam hit to PF03486, HI0933-like protein, score 6e-207" misc_feature complement(346082..347194) /locus_tag="SEQ_0364" /inference="protein motif:PFAM:PF00890" /note="HMMPfam hit to PF00890, FAD binding domain, score 0.0042" misc_feature complement(346103..347194) /locus_tag="SEQ_0364" /inference="protein motif:PFAM:PF07992" /note="HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 0.00028" misc_feature complement(346400..347194) /locus_tag="SEQ_0364" /inference="protein motif:PFAM:PF01266" /note="HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00026" gene 347281..347862 /locus_tag="SEQ_0365" /db_xref="GeneID:7697380" CDS 347281..347862 /locus_tag="SEQ_0365" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="YP_002745762.1" /db_xref="GI:225869815" /db_xref="GeneID:7697380" /translation="MLLFLIRIFSYSNKEEIMAIEKTVSELADILGVSRQAVNNRVKS LPEEDLDKNDKGVTVVKRSGLVKLEEIYKKTIFDDEPISEETKQRELLEILVDEKNTE ITRLYEQLKAKDSQLAAKDEQMRIKDVQIAEKDKQLDQQQQLTAKAMADKETLKLELE EAKAEADQVRLQAEEIQSEMGPKKGFLNRLFGK" misc_feature 347344..347409 /locus_tag="SEQ_0365" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1868.000, SD 5.55 at aa 22-43, sequence KTVSELADILGVSRQAVNNRVK" misc_feature 347629..347772 /locus_tag="SEQ_0365" /inference="protein motif:PFAM:PF04394" /note="HMMPfam hit to PF04394, Protein of unknown function, DUF536, score 5e-14" gene 347907..348494 /locus_tag="SEQ_0366" /db_xref="GeneID:7697381" CDS 347907..348494 /locus_tag="SEQ_0366" /codon_start=1 /transl_table=11 /product="exonuclease" /protein_id="YP_002745763.1" /db_xref="GI:225869816" /db_xref="GeneID:7697381" /translation="MKQLEAYIAFDMEFNTVNEVSHIIQLSAVKWHKHQEVDSFDSYV YTAVPLQSFINGLTGITSDKIVSAPKVDEVLDAFKQFVGDTPLIGYNAQKSDLPILAA NGLDLSAQYAVDVFDEAYERRSSDLNGIANLRLQTVADFLGIKGRGHNSLEDARMTAR VYEAFVEFDDNKSYLNKQKEAIADNPFAALGGLFD" misc_feature 347925..348392 /locus_tag="SEQ_0366" /inference="protein motif:PFAM:PF00929" /note="HMMPfam hit to PF00929, Exonuclease, score 3.2e-14" gene 348598..349320 /locus_tag="SEQ_0367" /db_xref="GeneID:7697382" CDS 348598..349320 /locus_tag="SEQ_0367" /codon_start=1 /transl_table=11 /product="MerR family regulatory protein" /protein_id="YP_002745764.1" /db_xref="GI:225869817" /db_xref="GeneID:7697382" /translation="MSDIYSTGELAKAAGVTVRTVQYYDKRGILLPSQLTEGGRRIYT ESDLERLKIICFLRDLDFSIEQIKRVLAEDNVMAVLDLLLVDHIQQLEQDLRTKKHQL DTAVKLLSGIRCSSSHSIKNLSDMSLTMNNQKAWRRLQLKMFSNIALAILVHVMLVLL TSYFHLSWLVWIEAPLWIIFFTLLIVYFRKQFEYLCPNCHTIFEPDFKEFALAGHTPR TRRLTCPHCHQKSYCLELAKEK" misc_feature 348610..348675 /locus_tag="SEQ_0367" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1629.000, SD 4.74 at aa 5-26, sequence YSTGELAKAAGVTVRTVQYYDK" misc_feature 348613..348726 /locus_tag="SEQ_0367" /inference="protein motif:PFAM:PF00376" /note="HMMPfam hit to PF00376, MerR family regulatory protein, score 2.7e-12" misc_feature join(349024..349092,349102..349161) /locus_tag="SEQ_0367" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0367 by TMHMM2.0 at aa 143-165 and 169-188" gene complement(349362..349661) /locus_tag="SEQ_0368" /db_xref="GeneID:7697383" CDS complement(349362..349661) /locus_tag="SEQ_0368" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745765.1" /db_xref="GI:225869818" /db_xref="GeneID:7697383" /translation="MMNMQNMMKQAQKLQKQMEQKQADLAAMQFTGKSAQELVTATFT GDKQLVSIDFKEAVVDPEDIETLQDMTAQAINAALAQIDEATKKTLGAFAGKLPF" misc_feature complement(349365..349640) /locus_tag="SEQ_0368" /inference="protein motif:PFAM:PF02575" /note="HMMPfam hit to PF02575, Uncharacterised BCR, YbaB family COG0718, score 1.9e-38" misc_feature complement(349560..349583) /locus_tag="SEQ_0368" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 350059..350646 /locus_tag="SEQ_0369" /db_xref="GeneID:7697384" CDS 350059..350646 /locus_tag="SEQ_0369" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745766.1" /db_xref="GI:225869819" /db_xref="GeneID:7697384" /translation="MTTTKQSKTTLAARYLKLGLTSAMFAGGAFLALGSAPAVSASTH AGNDQPATQRLTDQEIYERAQKLDLPDYVRGSIYGILNQNSSVTYPKDIAGLEQSEAP QPPAAPQLTDQDAQKLDLPDYVRGSIYGILNQNSSVTYPKDIAGLEQSEAPQPPAAPQ LTDQDAQQLDLPDYVRGSIYGILNQNSSITYPRDY" sig_peptide 350059..350181 /locus_tag="SEQ_0369" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0369 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.832 between residues 44 and 45" misc_feature 350110..350178 /locus_tag="SEQ_0369" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0369 by TMHMM2.0 at aa 21-43" misc_feature 350791..351129 /inference="protein motif:PFAM:PF00072" /note="HMMPfam hit to PF00072, Response regulator receiver domain, score 2.1e-39" repeat_region 351331..352759 /note="ISSeq3" repeat_region 351339..351350 /note="perfect inverted repeat flanking IS element" gene 351385..351900 /locus_tag="SEQ_0371" /db_xref="GeneID:7697385" CDS 351385..351900 /locus_tag="SEQ_0371" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745767.1" /db_xref="GI:225869820" /db_xref="GeneID:7697385" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature 351439..351504 /locus_tag="SEQ_0371" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" misc_feature 351547..351828 /locus_tag="SEQ_0371" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature 351706..351744 /locus_tag="SEQ_0371" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" gene 351924..352727 /locus_tag="SEQ_0372" /db_xref="GeneID:7697386" CDS 351924..352727 /locus_tag="SEQ_0372" /codon_start=1 /transl_table=11 /product="transposase for IS1664 element" /protein_id="YP_002745768.1" /db_xref="GI:225869821" /db_xref="GeneID:7697386" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITEYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature 352230..352712 /locus_tag="SEQ_0372" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 8.8e-38" repeat_region complement(352740..352751) /note="perfect inverted repeat flanking IS element" gene 352905..353951 /locus_tag="SEQ_0374" /db_xref="GeneID:7697387" CDS 352905..353951 /locus_tag="SEQ_0374" /codon_start=1 /transl_table=11 /product="histidine kinase protein" /protein_id="YP_002745769.1" /db_xref="GI:225869822" /db_xref="GeneID:7697387" /translation="MRLRTYIVIGYLMSMLITIAGLIVGLNQMLITIEDISYILVIAL IASVAGGIVNMILLSNVFSSLKRLKKKIQAISERNFDSGQLIKCPLEFKDLEEAFNQM SSELKVSFESLSESEHEKSMMIAQLSHDIKTPLTSIQATVEGILDGVIPREEERHYLN TISRQTNRLNQLVEELHMVSLNDQKQDDKQQLQIIYLEKLLIDMLSEFQLTLEQEKRS VHIEVAKEVVKISSRYDALSRIMLNLVSNALKYSKANTALTIHAYQQEQSIRIDVIDQ GQGIKKEDLPLIFKRLYRVEASRNMKTGGHGLGLSIARQLARQLGGDIAVESQLGKGS CFSLLLPASPPLGD" misc_feature join(352923..352991,353019..353087) /locus_tag="SEQ_0374" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0374 by TMHMM2.0 at aa 7-29 and 39-61" misc_feature 353019..353228 /locus_tag="SEQ_0374" /inference="protein motif:PFAM:PF00672" /note="HMMPfam hit to PF00672, HAMP domain, score 5.6e-08" misc_feature 353259..353459 /locus_tag="SEQ_0374" /inference="protein motif:PFAM:PF00512" /note="HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.6e-15" misc_feature 353598..353933 /locus_tag="SEQ_0374" /inference="protein motif:PFAM:PF02518" /note="HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.4e-37" misc_feature complement(354347..354406) /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0375 by TMHMM2.0 at aa 242-261" misc_feature complement(354473..354586) /inference="protein motif:PFAM:PF02986" /note="HMMPfam hit to PF02986, Fibronectin binding repeat, score 1.8e-19" misc_feature complement(354590..354697) /inference="protein motif:PFAM:PF02986" /note="HMMPfam hit to PF02986, Fibronectin binding repeat, score 1.4e-19" misc_feature complement(354701..354808) /inference="protein motif:PFAM:PF02986" /note="HMMPfam hit to PF02986, Fibronectin binding repeat, score 8.8e-18" misc_feature complement(354812..354919) /inference="protein motif:PFAM:PF02986" /note="HMMPfam hit to PF02986, Fibronectin binding repeat, score 8.8e-18" misc_feature complement(354923..355030) /inference="protein motif:PFAM:PF02986" /note="HMMPfam hit to PF02986, Fibronectin binding repeat, score 6.7e-18" gene complement(355853..356071) /gene="fne" /locus_tag="SEQ_0377" /db_xref="GeneID:7697388" misc_feature complement(355853..356071) /gene="fne" /locus_tag="SEQ_0377" /inference="protein motif:PFAM:PF08341" /note="HMMPfam hit to PF08341, Fibronectin-binding protein signal sequence, score 3.9e-27" gene 356463..357971 /locus_tag="SEQ_0378" /db_xref="GeneID:7696931" CDS 356463..357971 /locus_tag="SEQ_0378" /codon_start=1 /transl_table=11 /product="regulatory protein-RofA related" /protein_id="YP_002745770.1" /db_xref="GI:225869823" /db_xref="GeneID:7696931" /translation="MLEEYLEPVINHQALLLTILLGKKRISFHAIQQKTGFSLANIKR YIHQLEELFQGDIAFEWDSTIVRCTVLKRGKPFLKTIYRQSVRLHILKFLLIKAPCYK VKSVSGFAREHFISTPSAYRLIQHMKPFVEECGLALEDNSVVGEEWRIRYLIALLHDK YGIVIYELTDHDLDIVHDFIFSIKKQQTPHPLLDKKFRFFDVLLSLSWKRGEFDVAIP QEGIFKRLKSLALYGYLEDFFKREGKLLLDMDFPSSEIDYIFLVYLTVNNSFSITQWS EEDSSALLTIIQEDPAYQELLGELRQLFGHYIAFDKACIQTLIPYFRKTLFDLSLFIP QKYYYAEEYQGSKLLANRIELMINSWAERVSGVGRLTGSNLHLLCTRLEQLVREGLPP LAIAVIEINKKNIDILYSLVMQQVSPCVAKVYRFNILSEAELPWRTDFDLIVTTAEMT AFIEERLSLNENTKILDFNFDFVMYQAEYLSQVIRELRDKQYQEALDTILNG" misc_feature 356481..356657 /locus_tag="SEQ_0378" /inference="protein motif:PFAM:PF08280" /note="HMMPfam hit to PF08280, M protein trans-acting positive regulator (M, score 5e-06" misc_feature 356670..356936 /locus_tag="SEQ_0378" /inference="protein motif:PFAM:PF05043" /note="HMMPfam hit to PF05043, Mga helix-turn-helix domain, score 6.7e-16" misc_feature 356976..357617 /locus_tag="SEQ_0378" /inference="protein motif:PFAM:PF08270" /note="HMMPfam hit to PF08270, M protein trans-acting positive regulator (M, score 5.7e-32" gene 358593..359270 /locus_tag="SEQ_0379" /db_xref="GeneID:7697389" CDS 358593..359270 /locus_tag="SEQ_0379" /codon_start=1 /transl_table=11 /product="CAAX amino terminal protease family membrane protein" /protein_id="YP_002745771.1" /db_xref="GI:225869824" /db_xref="GeneID:7697389" /translation="MDTIKRHRAAVLVMLYIIAVYLYRQVSNVIELPPLLNTFLFYGR HLLIFALGICWLYRADYQRDWRQFSTKWVKNTLWVLVIFAVLYVANILLSSLPLEESS NAAVLANRYNASEGFETVIFILVVSIIGPFNEELIFRKILIGEGQSGTGMLLARLLGS SLLFGLVHIYSFSELSSIVVYGGLGLLLGLVYVWKKNIYFSTVAHILNNGIGYVFILL ELLGVLR" misc_feature join(358611..358664,358692..358760,358818..358886, 358929..358988,359049..359108,359121..359174, 359193..359261) /locus_tag="SEQ_0379" /inference="protein motif:TMHMM 2.0" /note="7 transmembrane helices predicted for SEQ0379 by TMHMM2.0 at aa 7-24, 34-56, 76-98, 113-132, 153-172, 177-194 and 201-223" misc_feature 358953..359240 /locus_tag="SEQ_0379" /inference="protein motif:PFAM:PF02517" /note="HMMPfam hit to PF02517, CAAX amino terminal protease family, score 7.3e-19" gene complement(359528..359902) /locus_tag="SEQ_0380" /pseudo /db_xref="GeneID:7697390" misc_feature complement(359528..359902) /locus_tag="SEQ_0380" /note="CDS contains a nonsense mutation (opal) after codon 40. Similar to Streptococcus pyogenes serotype M1 repressor-phage associated (transcriptional regulator) UniProt:Q99Y57 (EMBL:AE006612 (124 aa) fasta scores: E()=2.5e-32, 85.593% id in 118 aa" /pseudo /db_xref="PSEUDO:CAW92519.1" misc_feature complement(join(359702..359779,359783..359869)) /locus_tag="SEQ_0380" /inference="protein motif:PFAM:PF01381" /note="HMMPfam hit to PF01381, Helix-turn-helix, score 3.2e-07" /pseudo gene 360060..360338 /locus_tag="SEQ_0381" /db_xref="GeneID:7697391" CDS 360060..360338 /locus_tag="SEQ_0381" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="YP_002745772.1" /db_xref="GI:225869825" /db_xref="GeneID:7697391" /translation="MRGGGKILSKATLKELRIAQKKTQKELSALTGISVRTLARYEKD VQKLRRAKYEKLRGIAEALTISVDDIFFGRRFGFYEIKSACLLIAFLL" misc_feature 360096..360269 /locus_tag="SEQ_0381" /inference="protein motif:PFAM:PF01381" /note="HMMPfam hit to PF01381, Helix-turn-helix, score 6.8e-11" misc_feature 360123..360188 /locus_tag="SEQ_0381" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1876.000, SD 5.58 at aa 22-43, sequence KTQKELSALTGISVRTLARYEK" gene 360492..360884 /locus_tag="SEQ_0382" /db_xref="GeneID:7697392" CDS 360492..360884 /locus_tag="SEQ_0382" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745773.1" /db_xref="GI:225869826" /db_xref="GeneID:7697392" /translation="MLTEEMKEMIAEQLAMVVTVDNEGNPNIGPKRSMRLLDDETLVY NENTGGQTCSNIQANGKIEVAYVNREQLRGYRFVGRAEIITEGPVFEAAKEWAEGKMG APKAAGLIHIESVYSLHSGAEAGKKVSK" misc_feature 360495..360755 /locus_tag="SEQ_0382" /inference="protein motif:PFAM:PF01243" /note="HMMPfam hit to PF01243, Pyridoxamine 5'-phosphate oxidase, score 6.2e-20" gene complement(360990..363275) /locus_tag="SEQ_0383" /db_xref="GeneID:7697393" CDS complement(360990..363275) /locus_tag="SEQ_0383" /EC_number="3.4.14.11" /codon_start=1 /transl_table=11 /product="Xaa-Pro dipeptidyl-peptidase" /protein_id="YP_002745774.1" /db_xref="GI:225869827" /db_xref="GeneID:7697393" /translation="MRYNQLSYIPTSLETAVAELQALGFAVQQEQAPKENFAIFLRKL FFHFQDTDYPLSHMIASKDLDLLTFLTSDATLTKEVFDLVALQVLGFIPAVDFTDAQD FIQKIGFPIVFDSQQLLLNLHQLLATRQKSGVTLIDSLVSQGLLPMDNCYHYFNGKAL ATFDTTSLIREVVYVEAPLDTDQDGQLDLIKVNIIRPKASTAIPSMMTASPYHQGINE TANDKKLHRMEGELSPKAPRRITVEPTDFQPLATKPSRLPVNECQETFSHISSYTLND YFLARGFANLYVSGVGTAGSTGFMTSGDYAQIESFKAVIDWLNGRATAYTSHKRDYQI KADWSNGLVATTGKSYLGTMSTGLATTGVDGLAVIIAEAAISSWYDYYRENGLVCSPG GYPGEDLDVLTELTYSRNLLPGDYLRHNDHYQQLLSQQSQALERQSGNYNQFWHDRNY LPQADRIKCEVVYTHGLQDWNVKPRQVYNIFNALPDSLGKHLFLHHGEHVYMHNWQSI DFREAMNALLCQKMLGQNNGFTLPTIIWQDNQKEQTWKELTAFGGHSKRQIALGDDHV LIDNHYGEEDFKRYSKDFRAFKAELFEGKANQAVIDILLEEDLPINGQACLKLKLKSS ENKGILAAQLLDYGKKKRFADIPAILELDSIDNGQQFAREALKELPFKDSPYRVVTKG VLNLQHRSDLLTIEDIPNDQWMTITFHLQPTIYHMAKGDTLRVVLYTTDFEHTIRDNS NYALTLDLEQSYLLIPTDEEE" misc_feature complement(361014..361733) /locus_tag="SEQ_0383" /inference="protein motif:PFAM:PF08530" /note="HMMPfam hit to PF08530, X-Pro dipeptidyl-peptidase C-terminal n, score 6.6e-78" misc_feature complement(361773..362726) /locus_tag="SEQ_0383" /inference="protein motif:PFAM:PF02129" /note="HMMPfam hit to PF02129, X-Pro dipeptidyl-peptidase (S15 family), score 6.7e-151" gene complement(363296..363955) /locus_tag="SEQ_0384" /db_xref="GeneID:7697394" CDS complement(363296..363955) /locus_tag="SEQ_0384" /codon_start=1 /transl_table=11 /product="Crp family regulatory protein" /protein_id="YP_002745775.1" /db_xref="GI:225869828" /db_xref="GeneID:7697394" /translation="MNHQILQRYIDSHNFPIIEKGYHKYLTFESLEEDFTYILKEGIV KQSVLSKYGMEFNLRYVTGLEITSVLNTGYSKDMREPYNVRIESETASFYKVRHSTFL RDISEDIELQGYVKDFYHYRLQKSMKKMQCMLTNGRIGAISTQIYDLMTLFGRPLANG HILIDFIITNEELGKFCGISTASSVSRLLKQLKKEGIIQINDQHIIITNLEKLKDNIV F" misc_feature complement(363362..363460) /locus_tag="SEQ_0384" /inference="protein motif:PFAM:PF00325" /note="HMMPfam hit to PF00325, Bacterial regulatory proteins, crp family, score 0.00017" gene 364124..365323 /locus_tag="SEQ_0385" /db_xref="GeneID:7697395" CDS 364124..365323 /locus_tag="SEQ_0385" /codon_start=1 /transl_table=11 /product="Major Facilitator Superfamily transporter" /protein_id="YP_002745776.1" /db_xref="GI:225869829" /db_xref="GeneID:7697395" /translation="MEDKLFNKHFIGITVLNFIVYMVYYLFTVIIAFVATKELGAKTS EAGLATGIYILGTLLARLIFGKQLEVFGRRLVLRGGAIFYLLTTLAYFFMPTIGMMYF VRLFNGFGYGVVSTATNTIVTAYIPASKRGEGINFYGLSTSLAAAIGPFVGTFMLDNL HIDFRMIIILCSVLIAVVVLGAFAFPVTDIALNSEQLAKTKSWTVDSFIERKALFITL IAFLMGIAYASVLGFQKLYTTDIHLTTVGAYFFVVYALIITITRPAMGRLMDVKGEQW VLYPSYLFLALGLFLLGSVTSSLPYLLSGALIGFGYGTFMSCGQAASIKGVEEHRFNT AMSTYMIGLDLGLGAGPYLLGLIKDMLLGSGVQSFHQLFWLAGLIPAACAVMYFLKTQ AKAIDKG" misc_feature join(364160..364228,364256..364315,364349..364417, 364445..364504,364523..364591,364619..364687, 364748..364816,364844..364912,364949..365008, 365021..365089,365126..365194,365237..365290) /locus_tag="SEQ_0385" /inference="protein motif:TMHMM 2.0" /note="12 transmembrane helices predicted for SEQ0385 by TMHMM2.0 at aa 13-35, 45-64, 76-98, 108-127, 134-156, 166-188, 209-231, 241-263, 276-295, 300-322, 335-357 and 372-389" misc_feature 365045..365077 /locus_tag="SEQ_0385" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 365343..365795 /locus_tag="SEQ_0386" /db_xref="GeneID:7697396" CDS 365343..365795 /locus_tag="SEQ_0386" /codon_start=1 /transl_table=11 /product="universal stress protein family protein" /protein_id="YP_002745777.1" /db_xref="GI:225869830" /db_xref="GeneID:7697396" /translation="MISKYKRILAAVDGSYESELAVEKAINVALRNDAVLLLAHVIDV KAYQGDAMVSDYVFDTQEEHAKEVLRYYEKMARGRGVSSIKKIIERGNPKKLLASDIP EKEQADLIMVGATGLNTFERLLIGSTSEYILRHAKKDLLVVRNCEKTL" misc_feature 365352..365774 /locus_tag="SEQ_0386" /inference="protein motif:PFAM:PF00582" /note="HMMPfam hit to PF00582, Universal stress protein family, score 4.6e-21" gene 365897..366745 /locus_tag="SEQ_0387" /db_xref="GeneID:7697397" CDS 365897..366745 /locus_tag="SEQ_0387" /codon_start=1 /transl_table=11 /product="glycerol facilitator-aquaporin" /protein_id="YP_002745778.1" /db_xref="GI:225869831" /db_xref="GeneID:7697397" /translation="MEITWTVKYITEFIATAFLIILGNGAVANVDLKGTKGNRSGWLV IAFGYGLGVMMPALMFGNVSGNHINPAFTFGLAVSGLFPWAHVLQYVLAQLLGAMFGQ LVVVAVYKPYFVQTDNPNNILGSFSTISAVDDGDKSSRKAAYINGFLNEFVGSFVLFF GAMALTKNYFGVELVGKLVEAGYDQTTAATQISPYVTGSLAVAHLGIGFLVMTLVTSL GGPTGPALNPARDLGPRLVHHFLPKSVLGQAKGDSKWWYSWVPVAAPVLAAVAAVAAF KFLYIK" misc_feature 365897..366724 /locus_tag="SEQ_0387" /inference="protein motif:PFAM:PF00230" /note="HMMPfam hit to PF00230, Major intrinsic protein, score 2.6e-14" misc_feature join(365909..365977,366020..366088,366107..366175, 366323..366391,366482..366550,366671..366739) /locus_tag="SEQ_0387" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0387 by TMHMM2.0 at aa 5-27, 42-64, 71-93, 143-165, 196-218 and 259-281" misc_feature 366095..366121 /locus_tag="SEQ_0387" /inference="protein motif:Prosite:PS00221" /note="PS00221 MIP family signature." gene 367238..367993 /locus_tag="SEQ_0388" /db_xref="GeneID:7697398" CDS 367238..367993 /locus_tag="SEQ_0388" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745779.1" /db_xref="GI:225869832" /db_xref="GeneID:7697398" /translation="MTLFDNIVFKTPVLRVNNRDLNIAFYQKNLGLRLVSEENAISIF SSWGQGQERFVIEESPAARTRVVDGPKKVNTIVIKTTAPKDIEQLLAHGVDYDLIFKG KKGYAFEVTSPEGDRFLLHAEDDIKELDIVDDVPAIDKEADFRGLSQFSFDLIVLNVL DDEQSRAFYQSIFGDCLPVTLEFNREAGQDLTIVPHVTWDLEILEFQVSDSYDLLALK TYLEDKGCQVYLDKKARVLVLSDPSQIEIWFVK" gene 367990..368931 /locus_tag="SEQ_0389" /db_xref="GeneID:7697399" CDS 367990..368931 /locus_tag="SEQ_0389" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_002745780.1" /db_xref="GI:225869833" /db_xref="GeneID:7697399" /translation="MTLEVIEKVSQQIQEGLYHGASLALFRCGGWQEHYIGTLDGQRP VTKGLVYDLASVSKVVGVATVCIAMINSGALALDTPLRHYYPDAQKLEVTLRQLLTHT SGLDPYIPNRDQLNAQQLRAAMHQLQVKDDKTFHYTDVNFLLLGFMLEHLHGKSLDEL FQEMVFTPFGMTETSFGPRPEAVPTVKGVLDGEVHDPKAKVLGNHAGSAGLFSTIRDL ERFIEHYLKESFSDRLFQSYSRQEKPRSLGWSLEGDWISHTGYTGPFIMLNKKEQQAA IFLTNRTYDKDDRALWIKERRQLRDAIHRTFDRNSPR" misc_feature 368014..368889 /locus_tag="SEQ_0389" /inference="protein motif:PFAM:PF00144" /note="HMMPfam hit to PF00144, Beta-lactamase, score 1.3e-52" misc_feature 368140..368187 /locus_tag="SEQ_0389" /inference="protein motif:Prosite:PS00146" /note="PS00146 Beta-lactamase class-A active site." gene complement(369681..372005) /locus_tag="SEQ_0391" /db_xref="GeneID:7697400" CDS complement(369681..372005) /locus_tag="SEQ_0391" /EC_number="2.3.1.54" /codon_start=1 /transl_table=11 /product="formate acetyltransferase" /protein_id="YP_002745781.1" /db_xref="GI:225869834" /db_xref="GeneID:7697400" /translation="MATVKTNADVFEKAWEGFKGTDWKEKASISRFVQANYTPYDGDE SFLAGVTERSLHIKKVIEETKAHYEATRFPYDTRPTSIADIPAGFIDKDKELIFGIQN DELFKLNFMPKGGIRMAETTLKENGYEPDPAVHEIFTKHVTTVNDGIFRAYTSNIRRA RHAHTVTGLPDAYSRGRIIGVYARLALYGADYLMQEKVNDWNAITEIDEESIRLREEI NLQYQALGEVVKLGDLYGVDVRRPAENVKEAIQWVNIAFMAVCRVINGAATSLGRVPI VLDIFAERDLARGTFTESEIQEFVDDFVLKLRTVKFARTKAYDALYSGDPTFITTSMA GMGNDGRHRVTKMDYRFLNTLDNIGNSPEPNLTVLWTDKLPYAFRRYCMHMSHKHSSI QYEGVTTMAKDGYGEMSCISCCVSPLDPENEEQRHNIQYFGARVNVLKALLTGLNGGY DDVHKDYKVFDIDPVTDDVLDFDTVKANFEKSLDWLTDTYVDALNIIHYMTDKYNYEA VQMAFLPSHQRANMGFGICGFANTVDTLSAIKYATVKPIRDEDGYIYDYETIGDYPRW GEDDPRSNELAEWLIEAYTTRLRSHKLYKNAEATVSLLTITSNVAYSKQTGNSPVHRG VYLNEDGTTNLSQLEFFSPGANPSNKAKGGWLQNLNSLASLDFSYAADGISLTTQVSP RALGKTHDEQVENLVTILDGYFENGGQHVNLNVMDLNDVYDKIMAGEDVIVRISGYCV NTKYLTPEQKTELTQRVFHEVLSMDDAAEAISGK" misc_feature complement(369777..370085) /locus_tag="SEQ_0391" /inference="protein motif:PFAM:PF01228" /note="HMMPfam hit to PF01228, Glycine radical, score 3.1e-41" misc_feature complement(369786..369812) /locus_tag="SEQ_0391" /inference="protein motif:Prosite:PS00850" /note="PS00850 Glycine radical signature." misc_feature complement(370167..371966) /locus_tag="SEQ_0391" /inference="protein motif:PFAM:PF02901" /note="HMMPfam hit to PF02901, Pyruvate formate lyase, score 0" gene 372214..373317 /locus_tag="SEQ_0392" /db_xref="GeneID:7697401" CDS 372214..373317 /locus_tag="SEQ_0392" /EC_number="2.7.7.7" /codon_start=1 /transl_table=11 /product="DNA polymerase IV" /protein_id="YP_002745782.1" /db_xref="GI:225869835" /db_xref="GeneID:7697401" /translation="MLIFPLINDTSRKIIHIDMDAFFAAVEERDNPELKGKPVVIGKN PRESGGRGVVSTCNYEARRFGIHSAMSSKEAYERCPQAIFISGDHAKYRRIGYDIREI FKRYTDQVEPVSIDEAYLDVTTNKLGIKSALKIARLIQHDIWNSLQLTCSAGVSYNKF LAKLASDFEKPHGLTLVLPDDALPFLEKLPIEKFHGVGKRTVERLHEMGIYTGQDLLR VPEMTLIDQFGRFGYELYRKARGISHSPVKPNRMRKSISSERTYAKLLYQEADIKAEL SKHARRVADLLEANKKLGRIIVLKVRYADFTTLTKRVSLPELTRDARIIDQVARELFD SLEEHQAGIRLLGVTMTGLKDKVTDILLDLSFN" misc_feature 372262..373278 /locus_tag="SEQ_0392" /inference="protein motif:PFAM:PF00817" /note="HMMPfam hit to PF00817, impB/mucB/samB family, score 2.4e-103" gene complement(373460..373945) /locus_tag="SEQ_0393" /db_xref="GeneID:7697402" CDS complement(373460..373945) /locus_tag="SEQ_0393" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745783.1" /db_xref="GI:225869836" /db_xref="GeneID:7697402" /translation="MISYEQVRQALRTSTITIIIINAISMVITLFGLAGIFFLKSQLD KPEFRAQFSAEQLRLFEVGISPFTIFMSVISLGLVVLTTVLCGFNLSKIKQGSTVSYV PYIIGIVLYLISIVSQLFSQIEPVSMIIVLAELALYGFAFYKAKTLNEKDKDNPQSIE E" misc_feature complement(join(373517..373573,373586..373654, 373673..373741,373832..373900)) /locus_tag="SEQ_0393" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0393 by TMHMM2.0 at aa 16-38, 69-91, 98-120 and 125-143" gene complement(374041..376440) /locus_tag="SEQ_0394" /db_xref="GeneID:7697403" CDS complement(374041..376440) /locus_tag="SEQ_0394" /codon_start=1 /transl_table=11 /product="RecD/TraA family helicase" /protein_id="YP_002745784.1" /db_xref="GI:225869837" /db_xref="GeneID:7697403" /translation="MEHFFTGTVDRIIFDNASNFFKILLLAIEDTDSDFDEADIVITG TMAEIIEGEAYTFWGELTQHPRYGQQLRLSRYQKAKPTSAGLVSYFSSEHFKGIGQKT AEKIIALYGNNPIDEILKNPSRLNEISSLSKANREAFVAKLKANYGTEQVIAALADLG LANRFAFQLFDKYKEEAVHIVKDNPYQLIEDIQGFGFKLADSLAEQLGIESASPKRFR AALLHCLLEQSIKRGDTYIQARELLALTISLLEDTRPVECDPAIVANQLTQLIDEGKV MTIGTRVFDSSLYYAEDGIQKHLTRLLQQPLTKEPSQDTIDQEIQAIQEELAITYDKI QKQAISQALTSKVFILTGGPGTGKTTVIRGILQAYASLYQIDLKQKDIPIILAAPTGR AARRMNELTGLASATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLT AINSNTQLIIVGDSDQLPSVGPGQVLADLLKVDRIPHITLDKIFRQSEESTIVDLANH IRQGILAPDFCQKKADRSYFEAQAPFIPGMMTKIVQAALKSGIPAEEIQILAPMYKGL AGINSLNQLMQNLLNPLANQTEFLFNETAFRKGDKVLHLVNDAQLNVFNGDIGYITDL IPAKYTESKQDEIIMDFDGTEIVYPRNEWLKITLAYAMSIHKSQGSEFQVVILPVTRQ SGRLLQRNLIYTAITRSKSKLIMLGEIAAFEEAIKKEGDKRHTYLVQRLQVAEADDHT AAASVKESNQSSLSVMPATSPQKEQEQPLYLLTPHNFLAIDPMIGLTEDDMLTFFKKK S" misc_feature complement(375364..375387) /locus_tag="SEQ_0394" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene complement(376669..377268) /locus_tag="SEQ_0395" /db_xref="GeneID:7697404" CDS complement(376669..377268) /locus_tag="SEQ_0395" /EC_number="3.4.21.89" /codon_start=1 /transl_table=11 /product="signal peptidase I" /protein_id="YP_002745785.1" /db_xref="GI:225869838" /db_xref="GeneID:7697404" /translation="MKQFIKEWGAFTLFILLFGLSRLFLWQPVKVDGHSMDPTLAHGE RLIIFNKAKIDRFDIVVASEEDENGQRKEIVKRVVGMPGDKLSYRNDTLYINNKKTKE PYLDTYLTSFKKDKLQSTYAYSDLFQELAENAAAFTVNSEGKTEFDITVPKGEYFLLG DDRIVSRDSREVGSFKKQDIVGEVKFRFWPLNKINLFPR" sig_peptide complement(376669..376767) /locus_tag="SEQ_0395" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0395 by SignalP 2.0 HMM (Signal peptide probability 0.720) with cleavage site probability 0.296 between residues 33 and 34" misc_feature complement(376975..377181) /locus_tag="SEQ_0395" /inference="protein motif:PFAM:PF00717" /note="HMMPfam hit to PF00717, Peptidase S24-like, score 1.3e-20" misc_feature complement(377005..377043) /locus_tag="SEQ_0395" /inference="protein motif:Prosite:PS00760" /note="PS00760 Signal peptidases I lysine active site." misc_feature complement(377149..377172) /locus_tag="SEQ_0395" /inference="protein motif:Prosite:PS00501" /note="PS00501 Signal peptidases I serine active site." misc_feature complement(377191..377250) /locus_tag="SEQ_0395" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0395 by TMHMM2.0 at aa 7-26" gene complement(377293..378252) /locus_tag="SEQ_0396" /db_xref="GeneID:7697405" CDS complement(377293..378252) /locus_tag="SEQ_0396" /EC_number="3.1.26.4" /codon_start=1 /transl_table=11 /product="ribonuclease HIII" /protein_id="YP_002745786.1" /db_xref="GI:225869839" /db_xref="GeneID:7697405" /translation="MHGMISHNRTFYVKIMFMDTLVFKINSQVSSSLIKQLAPYRISN ANPYVRLAAKKDGVTLMLYTSGKLVLQGRQAAKLAQELDLQETPADQRPAPSSAQDIP LIGSDEVGNGSYFGGIAVVASFVQPEEHALLRQLGVDDSKNLNDKSIAQIAPVLKKHI QHRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQA NYDKYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDLGYRLPS GAGRPSDQIASQILAAYGMAGLEHCAKLHFANTKKAQALLKKQ" misc_feature complement(377326..377943) /locus_tag="SEQ_0396" /inference="protein motif:PFAM:PF01351" /note="HMMPfam hit to PF01351, Ribonuclease HII, score 4.7e-62" gene 378319..378630 /locus_tag="SEQ_0397" /db_xref="GeneID:7697406" CDS 378319..378630 /locus_tag="SEQ_0397" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745787.1" /db_xref="GI:225869840" /db_xref="GeneID:7697406" /translation="MKNINRYKLTFGEKTLTLTTDKDNLFMEEVDRVAKEKYQAIKER LPEADDETVAILMTINTLSAQLSREIEIEKIEAEIVELREKALAGIQEKASQADTDEV S" gene 378627..379175 /locus_tag="SEQ_0398" /db_xref="GeneID:7697407" CDS 378627..379175 /locus_tag="SEQ_0398" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745788.1" /db_xref="GI:225869841" /db_xref="GeneID:7697407" /translation="MMLSVLILLLLSWSFYIGYNRGLILQTFYCFGALVSLLFAHHGY KALAGKLALWVPYSNPAEGAATLFFKDINIFELDKVYYAGIAFFILSTVGYAVVRLAG VLVHLAPVDYFDGFEAKLASGLLAVMVSVLFLSMALTVLATIPMPFIQGRLHGSLLSR LLVEHCPFISSILRQLWVTAIL" misc_feature 378630..379151 /locus_tag="SEQ_0398" /inference="protein motif:PFAM:PF02674" /note="HMMPfam hit to PF02674, Colicin V production protein, score 2.4e-44" misc_feature join(378630..378683,378693..378746,378864..378932, 378990..379058) /locus_tag="SEQ_0398" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0398 by TMHMM2.0 at aa 2-19, 23-40, 80-102 and 122-144" gene 379248..381584 /locus_tag="SEQ_0399" /db_xref="GeneID:7697408" CDS 379248..381584 /locus_tag="SEQ_0399" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein" /protein_id="YP_002745789.1" /db_xref="GI:225869842" /db_xref="GeneID:7697408" /translation="MEKKILEQLEFEKVKEQFWPYLQTEQGQLELDLLEPIANKDKIQ AYFTELEEMAAIFVEHHHFALGGLSDVSESMQRLDLEADLSIQELLAVKKLLQVSAEV CRFYADLENVDLVALKALFEKIESFPSLQGSLQAINDAGFVEGFASPELESIRRQISN KEHASRQLLQDILKKQAAYLSESLIASRNGRSVLPVKNTYRHKVAGVVHDMSASGSTV YIEPRALVSLNEELTQLQTDERHEIGRILHELSEQLRPHSRSLRNNAWLLGHLDLVRA KYLYMQAKQATVPVISDDKSLQLLNARHPLIQNPVANDLHFANDLAVIVITGPNTGGK TIMLKTLGLAQVMAQSGLPILADKGSRVAVFNGIYADIGDEQSIEQSLSTFSSHMTHI VEILNQADSDSLILFDELGAGTDPQEGASLAMAILEQLRLTNIKTMATTHYPELKAYG IETAYVENASMAFDNVSLKPTYRFMQGVPGRSNAFDIARRLGLAEHIVKEAQAMTATD HDVNRIIEQLEQQTLESRKRLEHIKEVEQDNLKFNRAVKKLYNEFSHAKDKELEKAAL EAREIVDIALAESDSILSQLHEKAELKPHEIIEAKHRLKQLAPEQSLSQNKVLKKAKK WRAPRVGDDIIVTAYGQRGTLLAQLKDKRWEAQVGLIKLTLKEDEFSLVKLKEEAQQP KKRAVKVVKKAATGKGPRARLDLRGKRYEEAMQELDAFIDQALLNNMSQVDIIHGIGT GVIREAVGKYLRRNKHVKSFGYAPQNAGGSGCTIANLG" misc_feature 380103..380810 /locus_tag="SEQ_0399" /inference="protein motif:PFAM:PF00488" /note="HMMPfam hit to PF00488, MutS domain V, score 5.9e-15" misc_feature 380229..380252 /locus_tag="SEQ_0399" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 381354..381581 /locus_tag="SEQ_0399" /inference="protein motif:PFAM:PF01713" /note="HMMPfam hit to PF01713, Smr domain, score 4.1e-35" misc_feature 381531..381563 /locus_tag="SEQ_0399" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene complement(381924..383243) /locus_tag="SEQ_0400" /db_xref="GeneID:7697409" CDS complement(381924..383243) /locus_tag="SEQ_0400" /codon_start=1 /transl_table=11 /product="pyridine nucleotide-disulphide oxidoreductase" /protein_id="YP_002745790.1" /db_xref="GI:225869843" /db_xref="GeneID:7697409" /translation="MEAYELIVIGFGKAGKTLAAKMAQLGKRVALIEQSPTMYGGTCI NIGCIPTKALITAAEHNASFADAMAHKDTVVHRLRQKNEQLLAQSGVTLYNGKASFVS NKTIQVEAGQERILLEGKHIVINTGAVSNRFPIPGLADSQHVVDSTGILALTEQPQRL AIIGAGNIGLEVASLYASLGSEVTMYEAAPAILGRYEPVVAELAQDYLEKAGVTFKLS ATVELIANDEAGRVLVTANGKTEAFDCLLYAMGRKPATQGLGLENTDIKLDDRYAVVV DDYCQTTVEGLYAVGDVNGGPQFTYTSLDDFRIVFGQLTGTSQYNHKDRGYLPTTVFI EPPLSQIGLTEKEAKEQGLPYKANELLVANMPRAHVNNDLRGIFKVIVNTETNEILGA TLFANNSHEYINLIKMAMDNQIPYTYLKNQLFTHPSMAENLNDVFNL" misc_feature complement(381933..382262) /locus_tag="SEQ_0400" /inference="protein motif:PFAM:PF02852" /note="HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidored, score 2.9e-27" misc_feature complement(382350..383231) /locus_tag="SEQ_0400" /inference="protein motif:PFAM:PF07992" /note="HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 3e-50" misc_feature complement(382353..383231) /locus_tag="SEQ_0400" /inference="protein motif:PFAM:PF01134" /note="HMMPfam hit to PF01134, Glucose inhibited division protein A, score 0.00044" misc_feature complement(382491..382769) /locus_tag="SEQ_0400" /inference="protein motif:PFAM:PF00070" /note="HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidored, score 3.5e-28" misc_feature complement(383094..383126) /locus_tag="SEQ_0400" /inference="protein motif:Prosite:PS00076" /note="PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site." misc_feature complement(383193..383216) /locus_tag="SEQ_0400" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 383423..383737 /locus_tag="SEQ_0401" /db_xref="GeneID:7697410" CDS 383423..383737 /locus_tag="SEQ_0401" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="YP_002745791.1" /db_xref="GI:225869844" /db_xref="GeneID:7697410" /translation="MAHIVTDATFEAETNEGLVLVDFWATWCGPCLMQAPILDQLAAE IDEAELKIVKLDVDDNPNTAQQFGIMSIPTLLFKKDGKVVKQVAGVHTKDQIKAIVAE LS" misc_feature 383423..383731 /locus_tag="SEQ_0401" /inference="protein motif:PFAM:PF00085" /note="HMMPfam hit to PF00085, Thioredoxin, score 4.3e-32" misc_feature 383480..383536 /locus_tag="SEQ_0401" /inference="protein motif:Prosite:PS00194" /note="PS00194 Thioredoxin family active site." gene complement(383983..385104) /locus_tag="SEQ_0402" /db_xref="GeneID:7697411" CDS complement(383983..385104) /locus_tag="SEQ_0402" /codon_start=1 /transl_table=11 /product="cell surface-anchored protein" /protein_id="YP_002745792.1" /db_xref="GI:225869845" /db_xref="GeneID:7697411" /translation="MNKKSARRRRKNLITKLAMTSALTLGVGAATTLAGQTEVRADNI LRLDMTDKEAVEKFANELKNEVHKNYRGSNTWQKLTLILNGYQNLREQIETELKNSEQ KVKELNDKVNSETQGKQELQNQLEKEKEELETLKKELEAEKAKGTGETEKLQKEIEAK NAMISDLQKQLEETKQRVQEFEAEVGKLMAEKADLQTKLNEQEQLNAKLQKEIEDLKA QIEKLKHCQDTPKPEPKPEPKPEPKPEPKPEPKPEPKPEPKPEPKPGPKPEPKPEPKP GPKPEPKPEPKPGPKPGPKPEPKPGPKPEPKPEPKPEPKPEAKKPEQPKPMTKPGAKK PEQSLPSTGDIRNPFFTPAAIAIMIAAGTIAIPKRKEED" sig_peptide complement(383983..384102) /locus_tag="SEQ_0402" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0402 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.448 between residues 40 and 41" misc_feature complement(383992..384114) /locus_tag="SEQ_0402" /inference="protein motif:PFAM:PF00746" /note="HMMPfam hit to PF00746, Gram positive anchor, score 0.00015" misc_feature complement(384073..384090) /locus_tag="SEQ_0402" /inference="protein motif:Prosite:PS00343" /note="PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide." misc_feature complement(385000..385068) /locus_tag="SEQ_0402" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0402 by TMHMM2.0 at aa 13-35" gene complement(385324..385590) /locus_tag="SEQ_0404a" /db_xref="GeneID:7697412" CDS complement(385324..385590) /locus_tag="SEQ_0404a" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745793.1" /db_xref="GI:225869846" /db_xref="GeneID:7697412" /translation="MKLTNALCLVAATAALALAPINTSTGQTNTVLASQKSTGHCTHT RSGWFKCPDGGSYYDESYDTHSSWLIWLYGAFYSAWEIITSWFK" gene complement(385875..387023) /locus_tag="SEQ_0404" /db_xref="GeneID:7697414" CDS complement(385875..387023) /locus_tag="SEQ_0404" /codon_start=1 /transl_table=11 /product="A/G-specific adenine glycosylase" /protein_id="YP_002745794.1" /db_xref="GI:225869847" /db_xref="GeneID:7697414" /translation="MIDLNDYGITMWDQDTIASFRRTLLAWYDQEKRDLPWRRTKDPY HIWVSEIMLQQTQVVTVIPYYERFLDWFPTVEALACADEERLLKAWEGLGYYSRVRNM QKAAQQIMTDFGGIFPSSHADITKLKGIGPYTAGAISSIAFDLPEPAVDGNVMRVMAR LFEINYDIGDPKNRKIFQAVMEVLIDPERPGDFNQALMDLGTDIEAAKNPRPDESPVR FFCAAYRHGTYDKYPIKEPKKKPRPIQVQAFVIRDSKGRLLLEKNTQGRLLGGFWAFP LIETKLVSQQLTLFEDSPIVLETMSQTTLFEERYGLMPIWSQATFPQVKHTFSHQKWT IELCEGFTDSMPLAPDRELVWVAIEDMAAYPMATPQKKMLEAYLKKQS" misc_feature complement(386601..386690) /locus_tag="SEQ_0404" /inference="protein motif:PFAM:PF00633" /note="HMMPfam hit to PF00633, Helix-hairpin-helix motif, score 2e-06" gene 387194..387337 /locus_tag="SEQ_0405" /pseudo /db_xref="GeneID:7697413" misc_feature 387194..387337 /locus_tag="SEQ_0405" /note="gene remnant. Similar to the C-terminal region of Streptococcus mutans hypothetical protein UniProt:Q8DTE7 (EMBL:AE014133 (125 aa) fasta scores: E()=2.9e-12, 72.340% id in 47 aa" /pseudo gene 387609..387740 /locus_tag="SEQ_0406" /db_xref="GeneID:7697329" CDS 387609..387740 /locus_tag="SEQ_0406" /note="Doubtful CDS" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745795.1" /db_xref="GI:225869848" /db_xref="GeneID:7697329" /translation="MKAYRDYQLWPKERSKQYKLEIPVIERTYAMLRFNKGRYKNGD" gene 388399..388689 /gene="rpsF" /locus_tag="SEQ_0408" /db_xref="GeneID:7697330" CDS 388399..388689 /gene="rpsF" /locus_tag="SEQ_0408" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S6" /protein_id="YP_002745796.1" /db_xref="GI:225869849" /db_xref="GeneID:7697330" /translation="MAKYEILYIIRPNIEEEAKNALVARFDSILTDNGATIVESKDWE KRRLAYEINDFREGLYHIVNLEATDAVALNEFDRLSKINGDILRHMIVKLDA" misc_feature 388402..388680 /gene="rpsF" /locus_tag="SEQ_0408" /inference="protein motif:PFAM:PF01250" /note="HMMPfam hit to PF01250, Ribosomal protein S6, score 2.7e-28" gene 388708..389196 /locus_tag="SEQ_0409" /db_xref="GeneID:7697331" CDS 388708..389196 /locus_tag="SEQ_0409" /codon_start=1 /transl_table=11 /product="single strand binding protein (SSB)" /protein_id="YP_002745797.1" /db_xref="GI:225869850" /db_xref="GeneID:7697331" /translation="MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGER EADFINCVIWRQQAENLANWAKKGALIGITGRIQTRNYENQQGQRVYVTEVVADNFQM LESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDGSPFGGSNPMDISDDDL PF" misc_feature 388711..389016 /locus_tag="SEQ_0409" /inference="protein motif:PFAM:PF00436" /note="HMMPfam hit to PF00436, Single-strand binding protein family, score 4.7e-32" misc_feature 389059..389130 /locus_tag="SEQ_0409" /inference="protein motif:Prosite:PS00583" /note="PS00583 pfkB family of carbohydrate kinases signature 1." gene 389355..389594 /gene="rpsR" /locus_tag="SEQ_0410" /db_xref="GeneID:7696275" CDS 389355..389594 /gene="rpsR" /locus_tag="SEQ_0410" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S18" /protein_id="YP_002745798.1" /db_xref="GI:225869851" /db_xref="GeneID:7696275" /translation="MAQQRRGGFKRRKKVDFIAANKIEYVDYKDTELLSRFVSERGKI LPRRVTGTSAKNQRKVTTAIKRARVMALMPYVNED" misc_feature 389412..389573 /gene="rpsR" /locus_tag="SEQ_0410" /inference="protein motif:PFAM:PF01084" /note="HMMPfam hit to PF01084, Ribosomal protein S18, score 6.2e-34" misc_feature 389430..389501 /gene="rpsR" /locus_tag="SEQ_0410" /inference="protein motif:Prosite:PS00057" /note="PS00057 Ribosomal protein S18 signature." repeat_region 389746..391174 /note="ISSeq3" repeat_region 389754..389765 /note="perfect inverted repeat flanking IS element" gene 389800..390315 /locus_tag="SEQ_0412" /db_xref="GeneID:7696276" CDS 389800..390315 /locus_tag="SEQ_0412" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745799.1" /db_xref="GI:225869852" /db_xref="GeneID:7696276" /translation="MTLSYEDKVQTYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature 389854..389919 /locus_tag="SEQ_0412" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" misc_feature 389962..390243 /locus_tag="SEQ_0412" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature 390121..390159 /locus_tag="SEQ_0412" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" gene 390339..391142 /locus_tag="SEQ_0413" /db_xref="GeneID:7696277" CDS 390339..391142 /locus_tag="SEQ_0413" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745800.1" /db_xref="GI:225869853" /db_xref="GeneID:7696277" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITDYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature 390645..391127 /locus_tag="SEQ_0413" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 1.1e-37" repeat_region complement(391155..391166) /note="perfect inverted repeat flanking IS element" gene complement(391294..391944) /locus_tag="SEQ_0414" /db_xref="GeneID:7696278" CDS complement(391294..391944) /locus_tag="SEQ_0414" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745801.1" /db_xref="GI:225869854" /db_xref="GeneID:7696278" /translation="MDLQQLTKKNQEFIHIATNQLIKDGKTDDDIKALLEEVIPTILE NQKKGITARSLYGAPTAWAASFSKEANQKEATPKNTNPWLMWLDTSLLFIGIVGLLNS IMTFFNTNTTVTGLVSLLALGFGGGASMYATYYFVYRHMGKDKSLRPSWFKVIGALTL AMLAWITLYSATAFLPKALNPQLPPVALLITGALAIGLRYLLQRKYNIQNTMAPQR" misc_feature complement(391312..391944) /locus_tag="SEQ_0414" /inference="protein motif:PFAM:PF06570" /note="HMMPfam hit to PF06570, Protein of unknown function (DUF1129), score 2.5e-135" misc_feature complement(join(391339..391398,391426..391494, 391531..391599,391627..391695)) /locus_tag="SEQ_0414" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0414 by TMHMM2.0 at aa 84-106, 116-138, 151-173 and 183-202" gene complement(392203..393147) /locus_tag="SEQ_0415" /db_xref="GeneID:7696279" CDS complement(392203..393147) /locus_tag="SEQ_0415" /codon_start=1 /transl_table=11 /product="CorA-like Mg2+ transporter protein" /protein_id="YP_002745802.1" /db_xref="GI:225869855" /db_xref="GeneID:7696279" /translation="MKQMFLSSAIEFKEIETFEPGAWIKLVNPSQEESIAIADQFNID ISDLRAPLDVEETSRIAVEDDYTLIIVDVPVYEERNNKSYYVTMPLGIIVTESAVITT CLHDMTLFDQFHKRKVKNFYTFMKTRFVFQILYRNAELFLTALRTIDRQSERLEAQLE AATRNEELIDMMELEKSIVYLKASLKFNERIVKKLSSSTSSLKKYIEDEDLLEDTLIE TQQAIEMAGIYENVLNAMTETTASIINNNQNTIMKTLALMTMALDIPTVIFSAYGMNF QDNWLPLNGLSHAFWYIVLLATLLSSFVVIYFIRKKWF" misc_feature complement(392206..393087) /locus_tag="SEQ_0415" /inference="protein motif:PFAM:PF01544" /note="HMMPfam hit to PF01544, CorA-like Mg2+ transporter protein, score 2.6e-07" misc_feature complement(join(392221..392289,392317..392385)) /locus_tag="SEQ_0415" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0415 by TMHMM2.0 at aa 255-277 and 287-309" gene 393343..396165 /gene="uvrA" /locus_tag="SEQ_0416" /db_xref="GeneID:7696280" CDS 393343..396165 /gene="uvrA" /locus_tag="SEQ_0416" /codon_start=1 /transl_table=11 /product="UvrABC system protein A (UvrA protein)" /protein_id="YP_002745803.1" /db_xref="GI:225869856" /db_xref="GeneID:7696280" /translation="MQDKLIIRGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFD TIYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTV TEINDYLRLLYARVGTPYCINGHGAITASSVEQIVEQVLELPERTRMQILAPLVRRKK GQHKTVFEKIQKDGYVRVRVDGEIFDVSEVPALSKSKMHNIEVVIDRLVNKDGIRSRL FDSIEAALRLGDGYLMIDTMDGNELLFSEYYSCPVCGFTVPELEPRLFSFNAPFGSCP TCDGLGIKLEVDLDLVVPDPSKTLREGALAPWNPISSNYYPTMLEQAMQSFGVDMDKP FEQLSEQEKELILYGSGDQEFHFHYVNDFGGERSIDIPFEGVVTNINRRYHETNSDYT RNVMRGYMNELTCASCHGYRLNDQALCVRVGGEYGLTIGQVSELSIADHLQLLDRLEL SDNESTIAKPIIKEIHDRLTFLNNVGLNYLTLSRSAGTLSGGESQRIRLATQIGSNLS GVLYVLDEPSIGLHQRDNDRLIDSLKKMRDLGNTLIVVEHDEDTMMQADWLIDVGPGA GDFGGQIVASGTPQQVARHKRSITGQYLSGRKSIPVPLERRAGNGRYIDIKGAAQNNL QNLDVRFPLEKFIAVTGVSGSGKSTLVNSILKKAVAQRLNRNSEKPGKHRSITGIDHL ERLIDIDQSPIGRTPRSNPATYTGVFDDIRELFAQTNEAKIRGYKKGRFSFNVKGGRC EACSGDGIIKIEMHFLPDVYVPCDVCHGRRYNSETLEVHYKGKNIAEILDMTVDDALV FFSAIPKIARKIQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYIL DEPTTGLHTDDIARLLKVLERFVDDGNTVLVIEHNLDVIKSADHIIDLGPEGGVGGGQ LVATGTPEEVAAVEESYTGQYLKLKL" misc_feature 393436..393459 /gene="uvrA" /locus_tag="SEQ_0416" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 394555..394572 /gene="uvrA" /locus_tag="SEQ_0416" /inference="protein motif:Prosite:PS00190" /note="PS00190 Cytochrome c family heme-binding site signature." misc_feature 394807..394851 /gene="uvrA" /locus_tag="SEQ_0416" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." misc_feature 395242..396066 /gene="uvrA" /locus_tag="SEQ_0416" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 6.5e-33" misc_feature 395263..395286 /gene="uvrA" /locus_tag="SEQ_0416" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 395629..395646 /gene="uvrA" /locus_tag="SEQ_0416" /inference="protein motif:Prosite:PS00190" /note="PS00190 Cytochrome c family heme-binding site signature." misc_feature 395830..395874 /gene="uvrA" /locus_tag="SEQ_0416" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." gene 396456..397532 /locus_tag="SEQ_0417" /db_xref="GeneID:7696281" CDS 396456..397532 /locus_tag="SEQ_0417" /EC_number="3.4.13.9" /codon_start=1 /transl_table=11 /product="metallopeptidase" /protein_id="YP_002745804.1" /db_xref="GI:225869857" /db_xref="GeneID:7696281" /translation="MSSFLAQRLSNCQALLEKKGLEAILITNLTNIYYLTGFSGTSAT VFISPKRRVFITDSRYTLIAKASIEGFDIIESRTPLAEIAAILQADKLSSLAFEDQVS FSFSQSLQAAFSEVTLLPQSGFIEALRLIKDASEIDIIAKACSISDKAFCDVLDFIKP GQTSELEVANFLDFRMRQYGASGISFDTIAASGYRSAMPHGRATDKIIQQGETLTLDF GCYYQHYVSDMTRTIHIGQVTDQEREIYELVLAANQALIAKAGAGMTYREFDAIPRQL ITEAGYGSHFTHGIGHGIGLDIHEDPFFAKTDQRLLAGMVVTDEPGIYLDGKYGVRIE DDLVITETGCQVLTKAPKELIVLT" misc_feature 396867..397502 /locus_tag="SEQ_0417" /inference="protein motif:PFAM:PF00557" /note="HMMPfam hit to PF00557, metallopeptidase family M24, score 3.4e-63" misc_feature 397317..397355 /locus_tag="SEQ_0417" /inference="protein motif:Prosite:PS00491" /note="PS00491 Aminopeptidase P and proline dipeptidase signature." gene 397576..398037 /locus_tag="SEQ_0418" /db_xref="GeneID:7696282" CDS 397576..398037 /locus_tag="SEQ_0418" /codon_start=1 /transl_table=11 /product="cytidine and deoxycytidylate deaminase" /protein_id="YP_002745805.1" /db_xref="GI:225869858" /db_xref="GeneID:7696282" /translation="MTDRLSWQDYFMANAELISKRSTCDRAFVGAVLVKDNRIIATGY NGGVSATDNCNEAGHYMEEGHCIRTVHAEMNALIQCAKEGISTAGTEIYVTHFPCINC TKALLQAGICKITYKSHYRPHPFAIELMDKKGVAYVQHDVPQIILGGAVEP" misc_feature 397588..397929 /locus_tag="SEQ_0418" /inference="protein motif:PFAM:PF00383" /note="HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminas, score 1.2e-31" misc_feature 397786..397893 /locus_tag="SEQ_0418" /inference="protein motif:Prosite:PS00903" /note="PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature." repeat_region complement(398044..398062) /note="perfect repeat flanking IS element" repeat_region complement(398063..399607) /note="ISSeq2" gene complement(398119..399516) /locus_tag="SEQ_0419" /db_xref="GeneID:7696283" CDS complement(398119..399516) /locus_tag="SEQ_0419" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745806.1" /db_xref="GI:225869859" /db_xref="GeneID:7696283" /translation="MIESKKYLVIKAVCEGKKQKNRACVELGLSKRQVNRLILAYREK GKSAFVHGNRSKRPTHAMSLETKRRIIEKYQSYGDLRPNVVHFCELLAEEENIAYSDT TVRKLLYQAGFLSPKTQRATKRRLKQEAKQKKREAEKRGSKLPTASNFFEEPDKAHPS RARKKFKGELIQMEASQFPWFGQQETHLHVAIDDASGDIVGAYFDTQETLNGYYHVLE QILEVHGIPFQFLTDKRTVFTYASSQSKKIEEDTFTQFGYACHQLGIAIETSSIPQAK GRVERLNQTLQSRLPIDLQRNQITSISQANRYLKRWIKRFNKQFGGLASESVFEKAPK PAQRNLLLARISERVIDSGHHIRYQNNFYLPVEGDKKIYFTRKTKALVIEAFDGDIYL NIADNIYATRKLPKHEKHSKEFEMVPKTKKERRKYIPPQSHPWKLASFKQYLHKIGKS YEEFKRERNTSQPQL" misc_feature complement(398527..399030) /locus_tag="SEQ_0419" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 6.4e-17" misc_feature complement(399376..399399) /locus_tag="SEQ_0419" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." repeat_region complement(399612..399630) /note="perfect repeat flanking IS element" gene 399699..400256 /locus_tag="SEQ_0420" /db_xref="GeneID:7696284" CDS 399699..400256 /locus_tag="SEQ_0420" /codon_start=1 /transl_table=11 /product="elongation factor P (EF-P)" /protein_id="YP_002745807.1" /db_xref="GI:225869860" /db_xref="GeneID:7696284" /translation="MIEASKLRAGMTFEAEGKLIRVLEASHHKPGKGNTIMRMKLRDV RTGSTFDTTYRPDEKFEQAIIETVPAQYLYKMDETAYFMNTETYDQYEIPVANVEQEL LYILENSDVKIQFYGTEVIGVQVPTTVELTVTETQPSIKGATVTGSGKPATLETGLVV NVPDFIEVGQKLIINTAEGTYVSRA" misc_feature 399705..399878 /locus_tag="SEQ_0420" /inference="protein motif:PFAM:PF08207" /note="HMMPfam hit to PF08207, Elongation factor P (EF-P) KOW-like domain, score 1.5e-18" misc_feature 399897..400061 /locus_tag="SEQ_0420" /inference="protein motif:PFAM:PF01132" /note="HMMPfam hit to PF01132, Elongation factor P (EF-P) OB domain, score 4.3e-12" misc_feature 400146..400205 /locus_tag="SEQ_0420" /inference="protein motif:Prosite:PS01275" /note="PS01275 Elongation factor P signature." gene 400299..400688 /locus_tag="SEQ_0421" /db_xref="GeneID:7696285" CDS 400299..400688 /locus_tag="SEQ_0421" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745808.1" /db_xref="GI:225869861" /db_xref="GeneID:7696285" /translation="MTTENIGEIVISPRVLEVITGIATMQVEGVHSLHNKNMADTFNK ASLGKGVYLQTEENGTVNADIYVYLQYGVKVPAVSMAIQRAVKSAVYDMAEVTISYVN IHVEGIVPEKTPKPEMKSLFDEDFLDD" misc_feature 400311..400625 /locus_tag="SEQ_0421" /inference="protein motif:PFAM:PF03780" /note="HMMPfam hit to PF03780, Protein of unknown function (DUF322), score 7.5e-41" gene 400681..401133 /gene="nusB" /locus_tag="SEQ_0422" /db_xref="GeneID:7696286" CDS 400681..401133 /gene="nusB" /locus_tag="SEQ_0422" /codon_start=1 /transl_table=11 /product="N utilization substance protein B homolog (NusB protein)" /protein_id="YP_002745809.1" /db_xref="GI:225869862" /db_xref="GeneID:7696286" /translation="MTKHFQHSRRDLRERAFQALFAMEMGGDFLPASQFAYDYDKEAA DDKQPSELPVFLLNLVNGVMDHKAELDEVIKKNLKTSWSIERLTVVDKTMLRLGLFEM TLFEETPDRVALNEIIEIAKKYSDDTSAKFINGLLSQFVSDESAAVTE" misc_feature 400708..401112 /gene="nusB" /locus_tag="SEQ_0422" /inference="protein motif:PFAM:PF01029" /note="HMMPfam hit to PF01029, NusB family, score 1.3e-29" misc_feature 400921..400950 /gene="nusB" /locus_tag="SEQ_0422" /inference="protein motif:Prosite:PS00339" /note="PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2." gene 401332..401598 /locus_tag="SEQ_0423" /db_xref="GeneID:7696287" CDS 401332..401598 /locus_tag="SEQ_0423" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745810.1" /db_xref="GI:225869863" /db_xref="GeneID:7696287" /translation="MSDTITSSPVAASAAISELVGVDTSRVHQQSVAFSVTKGIAGME KGRQVSNQLLQAVSDFSQAVLIQANKFPQLAAKLEKRDLEEATR" gene 401610..401969 /locus_tag="SEQ_0424" /pseudo /db_xref="GeneID:7696288" misc_feature 401610..401969 /locus_tag="SEQ_0424" /note="CDS contains a nonsense mutation (ochre) in comparison to SZO16200" /pseudo /db_xref="PSEUDO:CAW92591.1" gene 401960..403366 /locus_tag="SEQ_0426" /pseudo /db_xref="GeneID:7696289" misc_feature 401960..403366 /locus_tag="SEQ_0426" /note="CDS contains a nonsense mutation (opal) in comparison to SZO16190" /pseudo /db_xref="PSEUDO:CAW92593.1" gene 403363..403869 /locus_tag="SEQ_0428" /db_xref="GeneID:7696290" CDS 403363..403869 /locus_tag="SEQ_0428" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745811.1" /db_xref="GI:225869864" /db_xref="GeneID:7696290" /translation="MKRKILLLMMLLVGVFIFSKRYELYYFFQGKEYLRPNESIELAV RPKYEQIEYSSDLYLESDEKVLLKLEGRDIWSEYIYRRTDSYLSKIGYRYSITEQVIE KYDSTKDNGVVIVEAGHKGATIDGDGLIVPLKGKRKYSVTEDHDYSITITNLSDQPVA FRAIVADR" sig_peptide 403363..403425 /locus_tag="SEQ_0428" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0428 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.714 between residues 21 and 22" gene complement(404246..405211) /locus_tag="SEQ_0429" /db_xref="GeneID:7696291" CDS complement(404246..405211) /locus_tag="SEQ_0429" /codon_start=1 /transl_table=11 /product="sucrose operon repressor" /protein_id="YP_002745812.1" /db_xref="GI:225869865" /db_xref="GeneID:7696291" /translation="MVAKLTDVAALAGVSPTTVSRVINKKGYLSQKTIDKVNKAMREL GYKPNNLARSLQGKSPQLIGLIFPNISNIFYAELIEHLEIELFKQGYKAIICNSENNP IKERDYLEMLAANQVDGIISSSHNLGIDDYERVEAPIVAFDRNLAPHIPIISSDNFEG GKLAAKTLQKHGCQKMIMITGNDHSDSPTGLRQLGFNYQLKKGADIIKLPNDLSSIRR EMEIKSILATRRPDGIFASDDLTAILIMKVAGQLGIAIPDNLKLIGYDGTAFIEHYFP QLTTIKQPIKEIASLTVEVLLKKIGNEKTSKDYVLPITLLPGGSL" misc_feature complement(404255..405034) /locus_tag="SEQ_0429" /inference="protein motif:PFAM:PF00532" /note="HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 3.4e-05" misc_feature complement(405035..405058) /locus_tag="SEQ_0429" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature complement(405128..405205) /locus_tag="SEQ_0429" /inference="protein motif:PFAM:PF00356" /note="HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 1.2e-10" misc_feature complement(405140..405205) /locus_tag="SEQ_0429" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1960.000, SD 5.86 at aa 3-24, sequence AKLTDVAALAGVSPTTVSRVIN" misc_feature complement(405143..405199) /locus_tag="SEQ_0429" /inference="protein motif:Prosite:PS00356" /note="PS00356 Bacterial regulatory proteins, lacI family signature." gene complement(405216..406655) /locus_tag="SEQ_0430" /db_xref="GeneID:7696292" CDS complement(405216..406655) /locus_tag="SEQ_0430" /EC_number="3.2.1.26" /codon_start=1 /transl_table=11 /product="sucrose-6-phosphate hydrolase" /protein_id="YP_002745813.1" /db_xref="GI:225869866" /db_xref="GeneID:7696292" /translation="MDLPRSIRYRPYQEWSKEAYQAIQQKVAQSLWRSHFHIEARTGL LNDPNGFSYFAGSFQLFYQNWPFGAAHGLKQWVHTTSTDLVHFTETKTRLLPDHQNDS HGAYSGSAYPIGDKLFLCYTGNVRSKDWVRHPLQIGAWMDQSGHITKCEQVLIDKPDD VTEHFRDPQLFTYQDQLYAIIGAQNLQQQGIIKLYKANNNDVTSWQFVADLDFDDSGT AYMIECPNLVFIEDKPVLIFCPQGLAKSELDYQNIYPNTYKVFQTFDPKRRKLLGGGP IQNLDFGFEAYATQAFNSPDGRVLAVSWIGLPDIDYPTDKYAYQGALSLVKELRLKNG RLHQAPVPALSKLRDKAQPFQNKKNSSNCYELALTIEAQQATELLLFADTQHKGLKLT VDTCKGQLTIDRSKAGAQYAQEFGAKRSCQIPVNRATLNIYVDKSILEIFVNQGEAVL TSRVFPNEGQSGIELLKGQVSGYYYEMRY" misc_feature complement(405318..405566) /locus_tag="SEQ_0430" /inference="protein motif:PFAM:PF08244" /note="HMMPfam hit to PF08244, Glycosyl hydrolases family 32 C termi, score 2.2e-13" misc_feature complement(405636..406547) /locus_tag="SEQ_0430" /inference="protein motif:PFAM:PF00251" /note="HMMPfam hit to PF00251, Glycosyl hydrolases family 32 N termi, score 1.4e-127" gene 406932..408815 /locus_tag="SEQ_0431" /db_xref="GeneID:7696293" CDS 406932..408815 /locus_tag="SEQ_0431" /EC_number="2.7.1.69" /codon_start=1 /transl_table=11 /product="sucrose-specific phosphotransferase system (PTS), IIABC component" /protein_id="YP_002745814.1" /db_xref="GI:225869867" /db_xref="GeneID:7696293" /translation="MDNHQIAKEVIEALGGRENVRSVAHCATRLRVMVHDEGKINKEK AEAIDKVKGAFFNSGQYQLIFGTGTVNSIYDEVVALGLPAALAGEQKEQVVKSGNAFQ RAIRTFGDVFVPIIPAIVAIGLFMGVRGLLTQPAVMEFFGIHDYGDNFLMYTRILTDT AFVYLPALVAWSAFRVFGGNPIIGIVLGLMLVSNELPNAWVVASGGDVKPLTFFGFVP VVGYQGTVLPAFFVGLVGAKLEKWLHKRVPDALDLLATPFLTFAIMSALGLFVIGPIF HSLENLVLAGTQAVLGLPFGIAGLVIGGVQQLIVVTGIHHIFNFLEAQLVANTGKDPF NAYLTAATAAQAGATLAVAVKTKSAKLKGLAFPSALSALLGITEPAIFGVNLRYPKVF VSGLIGGAAGGWVAGILGIAGTGFGITVLPGALLYLNGQLLQYLVTLLVGLGLAFVIA YIWGFKDKSDQEAPATQVKSEPAQKASAAEELLSPVAGELIDLSSVADPVFSSGSMGQ GVAIKPEGRILCSPVDGRVEAALETGHAYVIKSDKGAEILLHIGIDTVSMAGEGFETF VKVGQMVKAGDALGSFDIARIQQAGLDTTTMLLVTNSADVHAVQILAQGKVTVGSPVI LVK" misc_feature 406950..407054 /locus_tag="SEQ_0431" /inference="protein motif:PFAM:PF00367" /note="HMMPfam hit to PF00367, phosphotransferase system, EIIB, score 9.1e-19" misc_feature 406986..407039 /locus_tag="SEQ_0431" /inference="protein motif:Prosite:PS01035" /note="PS01035 PTS EIIB domains cysteine phosphorylation site signature." misc_feature 407256..408128 /locus_tag="SEQ_0431" /inference="protein motif:PFAM:PF02378" /note="HMMPfam hit to PF02378, Phosphotransferase system, EIIC, score 1.1e-45" misc_feature join(407262..407327,407385..407453,407472..407540, 407568..407636,407691..407759,407802..407870, 407931..407993,408021..408089,408102..408170, 408228..408296) /locus_tag="SEQ_0431" /inference="protein motif:TMHMM 2.0" /note="10 transmembrane helices predicted for SEQ0431 by TMHMM2.0 at aa 111-132, 152-174, 181-203, 213-235, 254-276, 291-313, 334-354, 364-386, 391-413 and 433-455" misc_feature 407826..407918 /locus_tag="SEQ_0431" /inference="protein motif:Prosite:PS00044" /note="PS00044 Bacterial regulatory proteins, lysR family signature." misc_feature 408360..408758 /locus_tag="SEQ_0431" /inference="protein motif:PFAM:PF00358" /note="HMMPfam hit to PF00358, phosphoenolpyruvate-dependent sugar phosph, score 1.4e-66" misc_feature 408561..408599 /locus_tag="SEQ_0431" /inference="protein motif:Prosite:PS00371" /note="PS00371 PTS EIIA domains phosphorylation site signature 1." gene 409044..412100 /locus_tag="SEQ_0432" /db_xref="GeneID:7696294" CDS 409044..412100 /locus_tag="SEQ_0432" /EC_number="3.2.1.96" /codon_start=1 /transl_table=11 /product="endoglycosidase (EndoS)" /protein_id="YP_002745815.1" /db_xref="GI:225869868" /db_xref="GeneID:7696294" /translation="MEKQVLVKKTLKCVCAAALMVAILAAQHDSLIRVKAEDKVVQTS PSVSAIDDLHYLSENSKKEFKEGLSKAGEVPEKLKDILSKAQQADKQAKVLAEMKVPE KIAMKPLKGPLYGGYFRTWHDKTSDPAEKDKVNSMGELPKEVDLAFVFHDWTKDYSFF WQELATKHVPTLNKQGTRVIRTIPWRFLAGGDHSGIAEDTQKYPNTPEGNKALAKAIV DEYVYKYNLDGLDVDIERDSIPKVNGKESNENIQRSIAVFEEIGKLIGPKGADKSRLF IMDSTYMADKNPLIERGAQYIDLLLVQVYGTQGEKGDWDPVARKPEKTMEERWESYSK YIRPEQYMVGFSFYEENAGSGNLWYDINERKDDHNPLNSEIAGTRAERYAKWQPKTGG VKGGIFSYAIDRDGVAHQPKKVSDDEKRTNKAIKDITDGIVKSDYKVSKALKKVMEND KSYELIDQKDFPDKALREAVIAQVGSRRGDLERFNGTLRLDNPDIKSLEGLNKLKKLA KLELIGLSQITKLDSLVLPANAKPTKDTLANVLEAYDSAKKEETKAIPQVALTISGLT GLKELNLAGFDRDSLAGIDAASLTSLEKVDLSSNKLDLAAGTENRQILDTMLATVTKH GGVSEKTFVFDHQKPTGLYPDTYGTKSLQLPVANDTIDLQAKLLFGTVTNQGTLINSE ADYKAYQEQEIAGHRFVDSSYDYKAFAVTYKDYKIKVTDSTLGVTDHKDLSTSKEETY KVEFFSPTNSTKPVHEAKVVVGAEKTMMVNLAEGATVIGGDADPTNAKKVFDGLLNND TTILSTSNKASIIFELKEPGLVKYWRFFNDSKISKADCIKEAKLEAFVGHLEAGSKVK DSLEKSSKWVTVSDYSGEDQEFSQPLNNIGAKYWRITVDTKGGRYNWPSLPELQIIGY QLPAADLVMAMLATAEELSQQKDKFSQEQLKELEVKIAALKAALDSKMFNADAINAST ADLKAYVDKLLADRTDQEKVAKAAKVEQPVATDIKENTEPENPKTD" sig_peptide 409044..409151 /locus_tag="SEQ_0432" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0432 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.930 between residues 36 and 37" misc_feature 409722..409748 /locus_tag="SEQ_0432" /inference="protein motif:Prosite:PS01095" /note="PS01095 Chitinases family 18 active site." gene 412457..413341 /locus_tag="SEQ_0433" /db_xref="GeneID:7696295" CDS 412457..413341 /locus_tag="SEQ_0433" /EC_number="2.7.1.4" /codon_start=1 /transl_table=11 /product="fructokinase" /protein_id="YP_002745816.1" /db_xref="GI:225869869" /db_xref="GeneID:7696295" /translation="MKTLLGSIEAGGTKFVCAVGDRDFAVVDKVQFPTTSPKETIERT IAYFKQFEADLASIAIGSFGPIDIDPKSATYGYITTTPKPGWANVDLLGQLTAAFAIP FYVTTDVNSSAYGEAISRPDVDSLVYYTIGTGIGAGAIQKGEFIGGLGHTEAGHTYVM QHLDDVANAFLGVCPFHRGCLEGMAAGPSLEARAGIKGELLDQKAAVWDIQAFYIAQA AVQATLLYRPQVIVFGGGVMAQEHMLVRVQEAFTRLINGYLPVADVREYLVTPAVAGN GSATLGNFALAKLIAEKS" misc_feature 412475..413026 /locus_tag="SEQ_0433" /inference="protein motif:PFAM:PF00480" /note="HMMPfam hit to PF00480, ROK family, score 1.2e-69" misc_feature 412847..412924 /locus_tag="SEQ_0433" /inference="protein motif:Prosite:PS01125" /note="PS01125 ROK family signature." gene 413445..414401 /locus_tag="SEQ_0434" /db_xref="GeneID:7696296" CDS 413445..414401 /locus_tag="SEQ_0434" /EC_number="5.3.1.8" /codon_start=1 /transl_table=11 /product="mannose-6-phosphate isomerase" /protein_id="YP_002745817.1" /db_xref="GI:225869870" /db_xref="GeneID:7696296" /translation="MRITMSEPLFLTSCMHDKIWGGTKLREVFGYELPTETTGEYWAI SAHPNGVSTVSSGSYQGQRLDQLYAERPELFGNPKEKVFPLLTKILDANDWLSVQVHP DDAYGLAHEGELGKTECWYIISAEEGAEIVYGHHASSKQELRAMIEAGNWEELLTRVP VKAGDFFYVPSGTMHAIGKGILILETQQSSDTTYRVYDFDRRDAEGQLRELHIEKSID VLTIGKPENSTPATLELEHLVSTCLVSNPFFTVYKWEIDQAVSMKQSAPYLLVSVLAG QGSLTIDQAVYELQKGMHFILPNDVTSWSFDGQLEMIVSHPN" misc_feature 413469..414395 /locus_tag="SEQ_0434" /inference="protein motif:PFAM:PF01238" /note="HMMPfam hit to PF01238, Phosphomannose isomerase type I, score 7.5e-98" gene 414777..417305 /locus_tag="SEQ_0435" /db_xref="GeneID:7696297" CDS 414777..417305 /locus_tag="SEQ_0435" /codon_start=1 /transl_table=11 /product="preprotein SecA subunit" /protein_id="YP_002745818.1" /db_xref="GI:225869871" /db_xref="GeneID:7696297" /translation="MSNILRKVIENDKGELRKLEKIAKKVESYADYMESLSDKDLQAK TPEFKQRYQNGETLEQLLPEAFAVVREAARRVLGLYPYRVQIMGGVVLHNGDVPEMRT GEGKTLTATMPVYLNALAGEGVHVITVNEYLSTRDATEMGEVYSWLGLSVGINLAAKS PAEKREAYLCDITYSTNSEVGFDYLRDNMVVRQEDMVQRPLNFALVDEVDSVLIDEAR TPLIVSGAVSSETNQLYIRADMFVKTLDSVDYIIDVPTKTIGLSDSGIDKAESYFNLS NLYDIENVALTHFVDNALRANYIMLLDIDYVVSEEGEILIVDQFTGRTMEGRRFSDGL HQAIEAKEGVRIQEESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREVYNMRIIP IPTNRPIARIDHTDLLYATLNSKFKAVVADVKARYEKGQPVLVGTVAVETSDLISKKL VEAGIPHEVLNAKNHFKEAQIIMNAGQRGAVTIATNMAGRGTDIKLGEGVRELGGLCV IGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFGTDRIKAFLDRMNNDD EDIVIKSRMLSRQVESAQKRVEGNNYDTRKQVLQYDDVMREQREIIYANRRDVITANR DLGPEIKAMIKRTIDRAVDAHSRTNRKDAIDAIVTFARTSIVPEETIGAKELRGLKDD QIKDKLYQRALEIYDKQLSKLRDQDAILEFQKVLILMIVDNKWTEHIDALDQLRNAVG LRGYAQNNPVVEYQSEGFKMFQDMIGAIEFDVTRTMMKAQIHEQERERAIQYATTTAA QNIQSQAIGADFDSSADFSRVERNDACPCHSGKKFKNCHGRKAF" misc_feature 414789..415925 /locus_tag="SEQ_0435" /inference="protein motif:PFAM:PF07517" /note="HMMPfam hit to PF07517, SecA DEAD-like domain, score 1.7e-199" misc_feature 415452..415793 /locus_tag="SEQ_0435" /inference="protein motif:PFAM:PF01043" /note="HMMPfam hit to PF01043, SecA preprotein cross-linking domain, score 3.3e-61" misc_feature 416121..416369 /locus_tag="SEQ_0435" /inference="protein motif:PFAM:PF00271" /note="HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 0.015" misc_feature 416217..416264 /locus_tag="SEQ_0435" /inference="protein motif:Prosite:PS01312" /note="PS01312 Protein secA signatures." misc_feature 416484..417119 /locus_tag="SEQ_0435" /inference="protein motif:PFAM:PF07516" /note="HMMPfam hit to PF07516, SecA Wing and Scaffold domain, score 7.9e-68" misc_feature 417237..417299 /locus_tag="SEQ_0435" /inference="protein motif:PFAM:PF02810" /note="HMMPfam hit to PF02810, SEC-C motif, score 3.7e-07" misc_feature 417249..417266 /locus_tag="SEQ_0435" /inference="protein motif:Prosite:PS00200" /note="PS00200 Rieske iron-sulfur protein signature 2." gene 417421..417777 /gene="acpS" /locus_tag="SEQ_0436" /db_xref="GeneID:7696298" CDS 417421..417777 /gene="acpS" /locus_tag="SEQ_0436" /EC_number="2.7.8.7" /codon_start=1 /transl_table=11 /product="holo-[acyl-carrier protein] synthase" /protein_id="YP_002745819.1" /db_xref="GI:225869872" /db_xref="GeneID:7696298" /translation="MIVGHGIDLQDISAIEKVYLRNARFARKVLTDKELALFEQFSHH RKMTYLAGRWAGKEAFSKAMGTGIGQLTFQDIEIINDSKGRPVITKSPFQGKAFISIS HSGGYVQASVILEDLA" misc_feature 417436..417639 /gene="acpS" /locus_tag="SEQ_0436" /inference="protein motif:PFAM:PF01648" /note="HMMPfam hit to PF01648, 4'-phosphopantetheinyl transferase superfami, score 1.2e-14" gene 417774..418874 /gene="alr" /locus_tag="SEQ_0437" /db_xref="GeneID:7696299" CDS 417774..418874 /gene="alr" /locus_tag="SEQ_0437" /EC_number="5.1.1.1" /codon_start=1 /transl_table=11 /product="alanine racemase" /protein_id="YP_002745820.1" /db_xref="GI:225869873" /db_xref="GeneID:7696299" /translation="MISSLHRPTVARVDLEAIRANIDHIHQHIPKKVRTYAVVKANAY GHGAVAVSKAVEDQVDGYCVSNLDEALELRQAGIDKEILILGVILASELQLAIKHQLT ITVASLEWLELAKKESVDFSQLHVHVKVDSGMGRIGVRSLAEANQLISILSDMGVQLD GIFTHFATADDSDHAMFDKQLTFFKQLVEQLDKRPALVHASNSATSLWHSETIFNAIR LGIVIYGLNPSGNSLSLPCPLKEALSLESRLVHVKQIQAGDSVGYGASYVAAEPEYVG TLPIGYADGWTRNMQGFKVLVEGEFCDIIGRVSMDQLTIRLPKAYPIGTKVTLIGQQG KQVITATDVADYRGTINYEVLCLLSDRIPREY" misc_feature 417795..418460 /gene="alr" /locus_tag="SEQ_0437" /inference="protein motif:PFAM:PF01168" /note="HMMPfam hit to PF01168, Alanine racemase, N-terminal domain, score 2.2e-93" misc_feature 417882..417914 /gene="alr" /locus_tag="SEQ_0437" /inference="protein motif:Prosite:PS00395" /note="PS00395 Alanine racemase pyridoxal-phosphate attachment site." misc_feature 418497..418871 /gene="alr" /locus_tag="SEQ_0437" /inference="protein motif:PFAM:PF00842" /note="HMMPfam hit to PF00842, Alanine racemase, C-terminal domain, score 1e-66" repeat_region complement(419017..419103) /note="perfect repeat flanking IS element" repeat_region 419103..419119 /note="perfect inverted repeat flanking IS element" repeat_region complement(join(419110..419848,421278..422452)) /note="ISSeq4" repeat_region complement(419849..421277) /note="ISSeq3" repeat_region 419857..419868 /note="perfect inverted repeat flanking IS element" gene complement(419881..420684) /locus_tag="SEQ_0439" /db_xref="GeneID:7696300" CDS complement(419881..420684) /locus_tag="SEQ_0439" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745821.1" /db_xref="GI:225869874" /db_xref="GeneID:7696300" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITEYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature complement(419896..420378) /locus_tag="SEQ_0439" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 8.8e-38" gene complement(420708..421223) /locus_tag="SEQ_0440" /db_xref="GeneID:7696301" CDS complement(420708..421223) /locus_tag="SEQ_0440" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745822.1" /db_xref="GI:225869875" /db_xref="GeneID:7696301" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature complement(420780..421061) /locus_tag="SEQ_0440" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature complement(420864..420902) /locus_tag="SEQ_0440" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" misc_feature complement(421104..421169) /locus_tag="SEQ_0440" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" repeat_region complement(421258..421269) /note="perfect inverted repeat flanking IS element" repeat_region complement(422436..422452) /note="perfect inverted repeat flanking IS element" repeat_region complement(422452..422538) /note="perfect repeat flanking IS element" gene 422579..423994 /locus_tag="SEQ_0442" /db_xref="GeneID:7696302" CDS 422579..423994 /locus_tag="SEQ_0442" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_002745823.1" /db_xref="GI:225869876" /db_xref="GeneID:7696302" /translation="MRKNKLLRMIMLMTLLVPHLETARVLAEDTGAEASQVPATANEA AIAQTGESTSTAAATSATDNSSSTTETTPNSGEPGATGSSSNTASSGSASGSTGQSTP TSPAASPQPAPEVATQASQPALNIVPAAPTVDLSLTLALPSVNTYAAYVTHWSGQSAY THNLLSRRYGIKAEQLDSFLKSTKIKYDEKRINGAALLQWEKKSGLDVRAIVAIAMTE SELGTKGNATLLGSNMFGYALFDLDSKKPNQFNDELAIVKLTQETIIKNSNLNFEQQD QKADKFAKKQLNFASDGGLYFTDTNGIGKRRAEIMEKLDAWIDQHGGTPEIPAELKIQ SSSSFAVVPTGYKLSKSYDILSYQASSYAWGQCTWYVYNRAKELGYQFDSFMGNGGDW RFKSGYSISKEPKVGYAVSFAPGQAGADGLYGHVSIVEDVRKDGSILISESNCLGLGQ ISYRTFTAEQANQLTYVVGKS" sig_peptide 422579..422659 /locus_tag="SEQ_0442" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0442 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.611 between residues 27 and 28" misc_feature 423617..423982 /locus_tag="SEQ_0442" /inference="protein motif:PFAM:PF05257" /note="HMMPfam hit to PF05257, CHAP domain, score 1.2e-45" misc_feature 424370..424561 /inference="protein motif:PFAM:PF07550" /note="HMMPfam hit to PF07550, Protein of unknown function (DUF1533), score 0.00011" misc_feature 424769..424972 /inference="protein motif:PFAM:PF07550" /note="HMMPfam hit to PF07550, Protein of unknown function (DUF1533), score 1.9e-13" misc_feature 425258..425569 /inference="protein motif:PFAM:PF05031" /note="HMMPfam hit to PF05031, Iron Transport-associated domain, score 4.4e-06" misc_feature 425758..425796 /inference="protein motif:Prosite:PS00018" /note="PS00018 EF-hand calcium-binding domain." gene 425869..425937 /locus_tag="SEQ_0444j" /db_xref="GeneID:7696303" misc_feature 425869..425937 /locus_tag="SEQ_0444j" /inference="protein motif:PFAM:PF00560" /note="HMMPfam hit to PF00560, Leucine Rich Repeat, score 0.25" gene 425941..426009 /locus_tag="SEQ_0444" /db_xref="GeneID:7696304" misc_feature 425941..426009 /locus_tag="SEQ_0444" /inference="protein motif:PFAM:PF00560" /note="HMMPfam hit to PF00560, Leucine Rich Repeat, score 0.38" gene 426013..426081 /locus_tag="SEQ_0444c" /db_xref="GeneID:7696305" misc_feature 426013..426081 /locus_tag="SEQ_0444c" /inference="protein motif:PFAM:PF00560" /note="HMMPfam hit to PF00560, Leucine Rich Repeat, score 1.3" gene 426085..426153 /locus_tag="SEQ_0444d" /db_xref="GeneID:7696306" misc_feature 426085..426153 /locus_tag="SEQ_0444d" /inference="protein motif:PFAM:PF00560" /note="HMMPfam hit to PF00560, Leucine Rich Repeat, score 0.9" gene 426229..426294 /locus_tag="SEQ_0444e" /db_xref="GeneID:7696307" misc_feature 426229..426294 /locus_tag="SEQ_0444e" /inference="protein motif:PFAM:PF00560" /note="HMMPfam hit to PF00560, Leucine Rich Repeat, score 1" gene 426370..426438 /locus_tag="SEQ_0444f" /db_xref="GeneID:7696308" misc_feature 426370..426438 /locus_tag="SEQ_0444f" /inference="protein motif:PFAM:PF00560" /note="HMMPfam hit to PF00560, Leucine Rich Repeat, score 1.4" gene 426442..426510 /locus_tag="SEQ_0444g" /db_xref="GeneID:7696309" misc_feature 426442..426510 /locus_tag="SEQ_0444g" /inference="protein motif:PFAM:PF00560" /note="HMMPfam hit to PF00560, Leucine Rich Repeat, score 1.6" gene 427063..427554 /locus_tag="SEQ_0444h" /db_xref="GeneID:7696310" misc_feature 427063..427554 /locus_tag="SEQ_0444h" /inference="protein motif:PFAM:PF05031" /note="HMMPfam hit to PF05031, Iron Transport-associated domain, score 1.2e-30" gene 427870..427929 /locus_tag="SEQ_0444i" /db_xref="GeneID:7696311" misc_feature 427870..427929 /locus_tag="SEQ_0444i" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0444 by TMHMM2.0 at aa 767-786" gene 428176..429081 /gene="shp" /locus_tag="SEQ_0445" /db_xref="GeneID:7696312" CDS 428176..429081 /gene="shp" /locus_tag="SEQ_0445" /codon_start=1 /transl_table=11 /product="heme-binding protein" /protein_id="YP_002745824.1" /db_xref="GI:225869877" /db_xref="GeneID:7696312" /translation="MKIINEEHMIKRLFKKLMGGLVVLLVCLAAIGGKAYADKGELYS CVIRRDYRHPVSGQIEDSGGEHAFEIGQGMVEGTVYSNGMLEVTSAGDLYLTFRMSLA DFSGNYQFWVQPGGTGAFQAAAYSVTKVGTDTNGTTKDIAIALPDVNTVVRGSMYVEP MGREVVFYLSPSELQEGYSGDMVASFAAGEAKTDHAVTAPAKADEKKAPSKPDSKDAK SAPNPSARPVGQSSSPKKQSNPSKKGQAVGLSTSLDKSKQESSQKPVNNPLPVLVYYV PTALLLSGALVLFIKKKRKNNEESH" sig_peptide 428176..428286 /gene="shp" /locus_tag="SEQ_0445" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0445 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 between residues 37 and 38" misc_feature join(428212..428271,428986..429045) /gene="shp" /locus_tag="SEQ_0445" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0445 by TMHMM2.0 at aa 13-32 and 271-290" gene 429065..429949 /gene="htsA" /locus_tag="SEQ_0446" /db_xref="GeneID:7696948" CDS 429065..429949 /gene="htsA" /locus_tag="SEQ_0446" /codon_start=1 /transl_table=11 /product="heme-binding lipoprotein" /protein_id="YP_002745825.1" /db_xref="GI:225869878" /db_xref="GeneID:7696948" /translation="MKKVIKLIGLAVLSLVLSACVDQHPRAEKKADKERIVATSVAVV DICDRLSLDLVGVCDSKLYQLPKRYDAVKRIGLPMNPDMEVIASLKPTWILSPNSLQN DLEPKYQQLDTEYGFLNLTSLEGMYQSIDDLGDLFDRKKEAKRLRADYEEFYRAFKKK HKGQKKPRVLILMGLPGSYLIATNKSYVGNLLELAGGENVYHSEDKEFLSANPEDMLQ QQPELILRTAHAIPDKVKDMFDKEFAENDIWKHFEAVKSQQVYDLDNTLFGMSAKFNY KEALNHLSQIFYGAKEVK" sig_peptide 429065..429151 /gene="htsA" /locus_tag="SEQ_0446" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0446 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.530 between residues 29 and 30" misc_feature 429092..429124 /gene="htsA" /locus_tag="SEQ_0446" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 429161..429865 /gene="htsA" /locus_tag="SEQ_0446" /inference="protein motif:PFAM:PF01497" /note="HMMPfam hit to PF01497, Periplasmic binding protein, score 3.5e-29" gene 429951..430973 /locus_tag="SEQ_0447" /db_xref="GeneID:7696937" CDS 429951..430973 /locus_tag="SEQ_0447" /codon_start=1 /transl_table=11 /product="iron/heme permease" /protein_id="YP_002745826.1" /db_xref="GI:225869879" /db_xref="GeneID:7696937" /translation="MQQGSQYSDQVTAARKRTTRLVYMVLLLMLLFGLMLYAVSVGGL SVSYQRIFNGLFVAYDSEVALIYDLRFPRIVIALLAGAGIATSGVLFQAILKNPISDP AIIGVCSGASFMVLLSSLLLPQLLFYGPLLSFVGGCVSFLMIYTLSWKKGLQPIRIIL TGIAINALFLGLSRAITDFSKTSNPFVNALLSGNISQKTWADVGVLWPYTVLGLLLAI GLARQCDLLLLNDGLIRNLGIDSNYLRLGISLVAVLLAAVSTSIVGVVSFLGLIVPHI GRLLVGSKHSYLIPFSALLGAFVFLLADTLGRQLCYPLEISPAVIMSIVGGPYFIYLL RRSDVI" sig_peptide 429951..430079 /locus_tag="SEQ_0447" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0447 by SignalP 2.0 HMM (Signal peptide probability 0.674) with cleavage site probability 0.380 between residues 43 and 44" misc_feature join(430011..430079,430155..430223,430257..430316, 430326..430394,430413..430481,430545..430613, 430695..430763,430806..430859,430878..430946) /locus_tag="SEQ_0447" /inference="protein motif:TMHMM 2.0" /note="9 transmembrane helices predicted for SEQ0447 by TMHMM2.0 at aa 21-43, 69-91, 103-122, 126-148, 155-177, 199-221, 249-271, 286-303 and 310-332" misc_feature 430038..430958 /locus_tag="SEQ_0447" /inference="protein motif:PFAM:PF01032" /note="HMMPfam hit to PF01032, FecCD transport family, score 1.1e-86" misc_feature 430332..430364 /locus_tag="SEQ_0447" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 430970..431752 /locus_tag="SEQ_0448" /db_xref="GeneID:7696313" CDS 430970..431752 /locus_tag="SEQ_0448" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_002745827.1" /db_xref="GI:225869880" /db_xref="GeneID:7696313" /translation="MSHEQGLIRVEDLSFTYRDRPILDRLSFTIPKGKITTIMGANGC GKSTLLGLLTKNIPVKSGQIFLEGQAISSISLKQFAQKVAVVHQDNQAVADLLVGDLV AVASQAHRRFFKGSSQEDDDIVAWALEVTNLRELAFREMQELSGGEKQRVWIAMALAQ KTGVLVLDEPTTYLDIKYQLDILALIKKINQELGMTIIMVLHDINQALAVSDCVLGLQ KGAIYAQGSPQEVLDQAFVEAVFGVSLPFIEKQDRRFVLTTL" misc_feature 431066..431629 /locus_tag="SEQ_0448" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 6.7e-49" misc_feature 431087..431110 /locus_tag="SEQ_0448" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 431399..431443 /locus_tag="SEQ_0448" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." gene 431798..433561 /locus_tag="SEQ_0449" /db_xref="GeneID:7696314" CDS 431798..433561 /locus_tag="SEQ_0449" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding membrane protein" /protein_id="YP_002745828.1" /db_xref="GI:225869881" /db_xref="GeneID:7696314" /translation="MNDTTEKISRAKKKMLLRRLKERIAPKRFLLYVSAFLSWLQFLM RLMSFYLIAKQFTAFLAGQALQLTRLLVILLILNAVGFGLAMIAKQLQGLASQFARDS LKQSFFDAFIAMDGQFDQQSTEADVLTVASQGIDSLDTYYSYYLSLAMLTAFNCTTVL LLVFLIYPIGGLVFILSLPLIPISIVAMQKRSKRIMNHYWSTYMDVGNLFMDDLKGLN TLYSYQADERYEESFVNKAEAFRKATMQLLGFQLQAVGYMDAVMYLGIGLSGFLAVQA LSAGGISFFDFLFFILIATEFFAPIREQGYGMHLVMMNTKMADQIFGFLDSVEAVDQD KGVALPAFDRIDIQDLSFSHGEKALLRDITMTIKKGELTAVAGVSGQGKTSLAQLLLK RYQADSGQIFLGDVTIDLASKQAINQEILYVSDQSTLLNMSIYENLAMAAQLTRKELL SWIDEHGILSFIYWLPDGIDTIVGENGCHLSAGQRQQVICARALLSQRSCYIFDEATS SLDAENEAAIHRLLQQLAKQAIVIVITHKMKYLKQADQVLFLSPEQSASLASPRELYR HHLAYRQLVDTQVELEANLYG" misc_feature join(431882..431950,431993..432061,432224..432292, 432302..432361,432575..432643) /locus_tag="SEQ_0449" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0449 by TMHMM2.0 at aa 29-51, 66-88, 143-165, 169-188 and 260-282" misc_feature 431984..432106 /locus_tag="SEQ_0449" /inference="protein motif:Prosite:PS00041" /note="PS00041 Bacterial regulatory proteins, araC family signature." misc_feature 432905..433456 /locus_tag="SEQ_0449" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 7.1e-40" misc_feature 432926..432949 /locus_tag="SEQ_0449" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 433554..435236 /locus_tag="SEQ_0450" /db_xref="GeneID:7696315" CDS 433554..435236 /locus_tag="SEQ_0450" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding membrane protein" /protein_id="YP_002745829.1" /db_xref="GI:225869882" /db_xref="GeneID:7696315" /translation="MVKSDYSTYRLVLRLLAMMKHLLAWIALAVMFAVLGFVLTVGIP TSLAYLGLEVMAGHAITFKWLYLFVAMALLRGLVRYGEHYFGHFVAFHSLAAFRRIVF KKLRALSPARLDSQDSGHLLKMIGEDIEALEVFFAHTLAPICTAFISASLMAYYLWQV SWKLALGAIVTYVLLAVIIPVYFSNVLQSLLKKQNEGRRAYVSSFLESLRSVKDLLQF QSIEKRFKLLSNQSKHVNALDRQVAQAQFLQMAITFLALGLSILTFAYVTLFELSQQT VTFAGGLLAFVAFTASFAPFLELGRLPLGFKRAMNAARNVFQLLDEEALVDKGDQRIS SVTRIAVEDLTFAYPKHQETIYHHLSVAFEKKGIIGIQGESGSGKSTLMKIIMKWYNW QAGHIFLSEVDSQTLNAASLQANFAYVPQNAQLFQQTLRDNITLGRKDISDDDIMELA EACGMKERILACDEGLDTLVRGSADFSAGEAQRLELMRALLKRADCYIFDEPTSNLDS LNEAIFIDLIKKHCRGMVFLISHRPSTLACADQLFCVRNGFLKEVNNERVNH" sig_peptide 433554..433697 /locus_tag="SEQ_0450" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0450 by SignalP 2.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.412 between residues 48 and 49" misc_feature join(433614..433682,433719..433787,433806..433859, 433956..434024,434043..434102,434295..434363, 434382..434450) /locus_tag="SEQ_0450" /inference="protein motif:TMHMM 2.0" /note="7 transmembrane helices predicted for SEQ0450 by TMHMM2.0 at aa 21-43, 56-78, 85-102, 135-157, 164-183, 248-270 and 277-299" misc_feature 434649..435197 /locus_tag="SEQ_0450" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 2.8e-39" misc_feature 434670..434693 /locus_tag="SEQ_0450" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 435217..435810 /locus_tag="SEQ_0451" /db_xref="GeneID:7696316" CDS 435217..435810 /locus_tag="SEQ_0451" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745830.1" /db_xref="GI:225869883" /db_xref="GeneID:7696316" /translation="MKGLTIKDIMTTGAFAALYFVCVGLGAMLSILFDRSGNMLYAPA FAALLGGPVYMLLIAKLQTFGPISLVGIIMGSFFFLTGHFFASMLPAILFGCLADGIA LLGKYQSRLVNLLSYLVFAFVNSGPIILMWLLKDAYIQSLLARGKDMAYVNRIMYDFT VANVSWFVGVVLLCALVGGLFGQYLLKKHFAKSGMLL" sig_peptide 435217..435354 /locus_tag="SEQ_0451" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0451 by SignalP 2.0 HMM (Signal peptide probability 0.724) with cleavage site probability 0.631 between residues 46 and 47" misc_feature join(435244..435312,435331..435399,435442..435510, 435547..435615,435706..435774) /locus_tag="SEQ_0451" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0451 by TMHMM2.0 at aa 10-32, 39-61, 76-98, 111-133 and 164-186" misc_feature 435472..435504 /locus_tag="SEQ_0451" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 435807..436487 /locus_tag="SEQ_0452" /db_xref="GeneID:7696317" CDS 435807..436487 /locus_tag="SEQ_0452" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745831.1" /db_xref="GI:225869884" /db_xref="GeneID:7696317" /translation="MRLDVRTKLLLLILANACFFFRIDGWLGTMIIGVLLGILFWLGQ GRLAIGMTLLYALLLALSVLPLHVLPAYLFRLLSFAAVAGQLLYPSVLAALIFVKTTT AYELVHGLRKWHVPEVCLLTLAVMLRFLPKIRQEGKIIRQSLKIRGIFLDSWAIVRQP RRYMEYLLVPLLMSLLRSSQDLTIASLTKGLAIKKGASECFVSHLSWKDWGVQIWIFV TIAYMVLQ" misc_feature 435810..436403 /locus_tag="SEQ_0452" /inference="protein motif:PFAM:PF02361" /note="HMMPfam hit to PF02361, Cobalt transport protein, score 4.7e-05" misc_feature join(435864..435932,435945..436013,436032..436100, 436143..436199) /locus_tag="SEQ_0452" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0452 by TMHMM2.0 at aa 20-42, 47-69, 76-98 and 113-131" gene 436484..437878 /locus_tag="SEQ_0453" /db_xref="GeneID:7696318" CDS 436484..437878 /locus_tag="SEQ_0453" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_002745832.1" /db_xref="GI:225869885" /db_xref="GeneID:7696318" /translation="MIKAKQLQFSYTNRRQTACELRDCQIEAGQFIVLCGQSGSGKST FLKLLNGLIPDYFSGQLQGSLKVLSHQAGQASVEVLSRQVSSVFQNPASQFFYREVKH ELVFPCENQGLEPALILERLDTLAADFDIKDLLEADMLKLSGGQKQRVAIAAAIMQGT AIMVFDEPTANLDHASVAAVKAYLKQLKAAGKTIIVAEHRLHYLLDLADHFYYFSAGR LERVLSPKDLLALPDQEREELGLRRCELTAVTKALRAKTVFEHYDPEHALQIKQLEVK AGSRVLYHLNQLSFGAGQITGITGANGLGKSQLALYLAGIFEAKEAKISYLGVTLPAK DRLSITSLVLQDVGLQLFSETVEKELNLGHHRHQATDDLVNRLGLSQLLDKHPASLSG GEQQRVMIAASLLSDKEIVILDEPSSGLDLLQMQALVSLLKELKQQKKVVIVISHDEE LLDQACDSIYQLSR" misc_feature 436568..437134 /locus_tag="SEQ_0453" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 4.8e-43" misc_feature 436577..436618 /locus_tag="SEQ_0453" /inference="protein motif:Prosite:PS00675" /note="PS00675 Sigma-54 interaction domain ATP-binding region A signature." misc_feature 436589..436612 /locus_tag="SEQ_0453" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 436907..436951 /locus_tag="SEQ_0453" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." misc_feature 437360..437869 /locus_tag="SEQ_0453" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 1.8e-30" misc_feature 437381..437404 /locus_tag="SEQ_0453" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 437651..437695 /locus_tag="SEQ_0453" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." gene 438242..440257 /locus_tag="SEQ_0454" /db_xref="GeneID:7696319" CDS 438242..440257 /locus_tag="SEQ_0454" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase" /protein_id="YP_002745833.1" /db_xref="GI:225869886" /db_xref="GeneID:7696319" /translation="MLLKSSIANLKGLGPKSAEKFQKLGIYQIKDLLLYYPFRYEDFK SKSALELLDGEKAVLTGRVVTPPSVQYYGFKRNRLSFKLKQGELVISVSFFNQPYLLE KIVLDQEVAIFGRWDQKKAALTGMKLLMTLEDDLQPVYHVAQGISQPTLIKAIRSAFD SGALAQLEENLPEPLIQKYRLLPRQAAVYAMHFPKHMEDYKQALRRIKFEEFFYFQMN LQVLKLANKAEGNGLAIPFHQQAVAKKIAALPFSLTRAQQRSLEEILADMTSGAHMNR LLQGDVGSGKTVIASLAMYAAQTAGFQSALMVPTEILAEQHYDSLCQLFPDLSIALLT SGMKAAEKRAALSAIADGSVDMIVGTHALIQDAVTYHKLGLVITDEQHRFGVNQRRLF REKGNNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIITRWVKHRQLDSVL AWVKTELAKGTQAYVISPLIEESETLDLKNAVALEAELKDYFKASASVALMHGKMKAD DKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLIMNADRFGLSQLHQLRGRVGRG SKQSYAILVADPKTDSGKERMTIMTTTNDGFVLAEADLKLRGSGEIFGTRQSGLPEFK TADIVEDYHILEEARRVAAEIVAAKDWQLDPRWAPILANLRVADQFD" misc_feature 439001..439489 /locus_tag="SEQ_0454" /inference="protein motif:PFAM:PF00270" /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 2.4e-34" misc_feature 439079..439102 /locus_tag="SEQ_0454" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 439712..439942 /locus_tag="SEQ_0454" /inference="protein motif:PFAM:PF00271" /note="HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 1.9e-21" gene complement(440377..441342) /locus_tag="SEQ_0455" /db_xref="GeneID:7696320" CDS complement(440377..441342) /locus_tag="SEQ_0455" /EC_number="3.5.1.1" /codon_start=1 /transl_table=11 /product="L-asparaginase" /protein_id="YP_002745834.1" /db_xref="GI:225869887" /db_xref="GeneID:7696320" /translation="MKEILVLHTGGTISMQADEAGKVSPNQNNPMNQVGLSLEHIHLT VVDFLNLPSPHITPHHMLKMYHYIQQRASQFDAVVITHGTDTLEETAYFLDTMVLPVE LPIVITGAMRSANEIGSDGIYNYLTALRVASHEKAKGKGVLVVMNDEIHAAKYVTKTH TTNVSTFQTPTHGPLGVVMKDDLLFFKTAEPRVRFELRHISGTVPIIKAYAGMGDGSI LSLLTPDRIQGLVIEALGAGNVPPLAVSELEKLIASGIPVVLVSRCFNGIAEPVYAYR GGGASLKRAGVMFVKELNAPKARLKLLIALNAGLTGQELKDYIEG" misc_feature complement(440395..441336) /locus_tag="SEQ_0455" /inference="protein motif:PFAM:PF00710" /note="HMMPfam hit to PF00710, Asparaginase, score 2.3e-142" misc_feature complement(441301..441327) /locus_tag="SEQ_0455" /inference="protein motif:Prosite:PS00144" /note="PS00144 Asparaginase / glutaminase active site signature 1." gene 441414..442802 /locus_tag="SEQ_0456" /db_xref="GeneID:7696321" CDS 441414..442802 /locus_tag="SEQ_0456" /codon_start=1 /transl_table=11 /product="haloacid dehalogenase-like hydrolase" /protein_id="YP_002745835.1" /db_xref="GI:225869888" /db_xref="GeneID:7696321" /translation="MTIKAVFFDIDGTLLNDRKNVQKTTQRAIQQLKKQGIMVGLATG RGPAFVQPFLENFGLDFAVTYNGQYILTRDKVLYQNQLPKSTIYKIIRYASDKKREIS LGTASGLAGSRIIDMGTSPFGQMVSSIVPRSLVKTVEGSFKNLIRRFKPQSFSNLVTI MREPIYQIVLVASVDDTQKIKERFPHIKVTRSSPYSLDLISSGQSKIKGIERLGEMFG FELSEVMAFGDSDNDLEMLSGVGVGVAMGNAEAVVKSGAHFTTASNNNDGISKALAHY GLIHFDVEKSFKSRDDNFNKVKDFHRLMDGDTIETPRGYSLKEAGYRADFKVEELVEF LYAASQGDKHRFSQALIDLHAALDKAAKKVQAKEHPESPLVGQVDALTDLLYFTYGSF VLMGVDPQPIFETVHEANMGKIFPDGKAHFDPITHKIQKPDDWQERYAPESAIKKELD KQLQKSLQRLEK" misc_feature 441417..442247 /locus_tag="SEQ_0456" /inference="protein motif:PFAM:PF05116" /note="HMMPfam hit to PF05116, Sucrose-6F-phosphate phosphohydrolase, score 4.2e-05" misc_feature 441420..442163 /locus_tag="SEQ_0456" /inference="protein motif:PFAM:PF00702" /note="HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 2.1e-10" misc_feature 441426..441461 /locus_tag="SEQ_0456" /inference="protein motif:Prosite:PS01228" /note="PS01228 Hypothetical cof family signature 1." misc_feature 441429..442232 /locus_tag="SEQ_0456" /inference="protein motif:PFAM:PF08282" /note="HMMPfam hit to PF08282, haloacid dehalogenase-like hydrolase, score 2.3e-80" misc_feature 441624..441689 /locus_tag="SEQ_0456" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 986.000, SD 2.55 at aa 71-92, sequence LTRDKVLYQNQLPKSTIYKIIR" misc_feature 442092..442160 /locus_tag="SEQ_0456" /inference="protein motif:Prosite:PS01229" /note="PS01229 Hypothetical cof family signature 2." gene complement(443088..443540) /locus_tag="SEQ_0457" /db_xref="GeneID:7696322" CDS complement(443088..443540) /locus_tag="SEQ_0457" /codon_start=1 /transl_table=11 /product="universal stress protein" /protein_id="YP_002745836.1" /db_xref="GI:225869889" /db_xref="GeneID:7696322" /translation="MSQTYERIMVAIDGSHGSELAFHKGVNVALRNGAALILTHVVDT RALQSVATFDSYIYDKLEQEAKEVLGDFEKQAREAGLTEVKQVIEFGNPKTLLAHDIP DKEEVDLIMVGATGLNTFERLLIGSSSEYILRHAKVDLLVVREHDKTL" misc_feature complement(443109..443531) /locus_tag="SEQ_0457" /inference="protein motif:PFAM:PF00582" /note="HMMPfam hit to PF00582, Universal stress protein family, score 9.6e-21" gene 443827..445041 /locus_tag="SEQ_0458" /db_xref="GeneID:7696323" CDS 443827..445041 /locus_tag="SEQ_0458" /codon_start=1 /transl_table=11 /product="aminotransferase" /protein_id="YP_002745837.1" /db_xref="GI:225869890" /db_xref="GeneID:7696323" /translation="MKIIEKSSKLEHVAYDIRGPVLDEANRMIANGEKILRLNTGNPA AFGFEAPDEVIRDLILNARSSEGYSDSKGIFSARKAIMQYCQLKGFPDVDIDDIYLGN GVSELISMSLQALLDNGDEVLVPMPDYPLWTACVSLGGGHAVHYLCDEEAEWYPDIAD IKAKITERTKAIVIINPNNPTGALYPREVLEEIVAIAREHQLIIFADEIYDRLVMDGG EHIAIASLAPDVFCVSMNGLSKSHRIAGFRVGWMVLSGPKRHVRGYIEGLNMLANMRL CSNVLAQQVVQTSLGGRQSVDELLLPGGRIFEQRNFIYQAINAIPGLSAVKPKAGLYL FPKIDRNMYRIDDDEEFVLQLLKQEKVMLVHGRGFNWKEPDHFRVVYLPTVEELADVQ EKITHVLKQYKR" misc_feature 443923..445011 /locus_tag="SEQ_0458" /inference="protein motif:PFAM:PF00155" /note="HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.2e-45" misc_feature 443995..444780 /locus_tag="SEQ_0458" /inference="protein motif:PFAM:PF01212" /note="HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.0012" gene 445213..445995 /locus_tag="SEQ_0459" /db_xref="GeneID:7696324" CDS 445213..445995 /locus_tag="SEQ_0459" /codon_start=1 /transl_table=11 /product="GTP-sensing transcriptional pleiotropic repressor" /protein_id="YP_002745838.1" /db_xref="GI:225869891" /db_xref="GeneID:7696324" /translation="MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNAC IINGGGSLLGYAMKYKTNTDRVEEFFETRQFPDAYVKAASRVYDTEANLSVENELTIF PIESKDIYPDGLTTIAPIYGGGMRLGTLIIWRNDNEFSDDDLVLVEISSTVVGIQLLN LQTENLEETIRKQTVVNMAINTLSYSEMKAVAAILSELDGNEGRLTASVIADRIGITR SVIVNALRKLESAGIIESRSLGMKGTYLKVINEGIFDKLKEF" misc_feature 445219..445776 /locus_tag="SEQ_0459" /inference="protein motif:PFAM:PF06018" /note="HMMPfam hit to PF06018, CodY GAF-like domain, score 4.3e-121" misc_feature 445780..445938 /locus_tag="SEQ_0459" /inference="protein motif:PFAM:PF08279" /note="HMMPfam hit to PF08279, HTH domain, score 0.00042" misc_feature 445813..445989 /locus_tag="SEQ_0459" /inference="protein motif:PFAM:PF08222" /note="HMMPfam hit to PF08222, CodY helix-turn-helix domain, score 3.5e-38" misc_feature 445825..445890 /locus_tag="SEQ_0459" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1428.000, SD 4.05 at aa 205-226, sequence LTASVIADRIGITRSVIVNALR" gene 446612..447169 /locus_tag="SEQ_0460" /db_xref="GeneID:7696325" CDS 446612..447169 /locus_tag="SEQ_0460" /codon_start=1 /transl_table=11 /product="isochorismatase family protein" /protein_id="YP_002745839.1" /db_xref="GI:225869892" /db_xref="GeneID:7696325" /translation="MKALISIDYTNDFVADDGSLTAGAPAQVISEAMASVVEAAFEAG YYIFFAIDAHEEGDSFHPEAALFPPHNIIGTRGRDLYGPLMTVYTRYQQDQRVFWLDK RHYSAFSGTDLDIRLRERGVTTLVLTGVLTDICVLHTAIDAYKLGYKLEIITSAVASN STENHQWALNHCRTVLGAKLLDRLS" misc_feature 446615..447157 /locus_tag="SEQ_0460" /inference="protein motif:PFAM:PF00857" /note="HMMPfam hit to PF00857, Isochorismatase family, score 1e-16" gene 447643..447945 /gene="gatC" /locus_tag="SEQ_0461" /db_xref="GeneID:7696326" CDS 447643..447945 /gene="gatC" /locus_tag="SEQ_0461" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA amidotransferase subunit C" /protein_id="YP_002745840.1" /db_xref="GI:225869893" /db_xref="GeneID:7696326" /translation="MKISEEEVRHVAALSKLSFSESETTEFATTLSKIVDMVELLNEV DTTGVAITTTMADKKNIMRADIAEAGVDRKLLFQNVPEKENHFIKVPAILDDGGDA" misc_feature 447697..447912 /gene="gatC" /locus_tag="SEQ_0461" /inference="protein motif:PFAM:PF02686" /note="HMMPfam hit to PF02686, Glu-tRNAGln amidotransferase C subunit, score 3.3e-14" gene 447945..449411 /gene="gatA" /locus_tag="SEQ_0462" /db_xref="GeneID:7696327" CDS 447945..449411 /gene="gatA" /locus_tag="SEQ_0462" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA amidotransferase subunit A" /protein_id="YP_002745841.1" /db_xref="GI:225869894" /db_xref="GeneID:7696327" /translation="MSFNHHTIEELHELLVAKDISAVELTKATLEDIKAREEAVGSFI TIACEAALKQAAALDAKGIDPDNVMSGIPLAVKDNISTKGILTTAASKMLYNYEPIFD ATAVANAYDKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHSRVPGGSSGGSATAV ASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGAVSRYGLIAFGSSLDQIGPFAPTV RENAQLLSVIAGSDRKDSTSAPVQIADYTIKIGQDIKGMKIALPKEYLGEGIDPKIKE TVLAAAKHFEKLGAIIEEVSLPHSKYGVAVYYIIASSEASSNLQRFDGIRYGFRAADA KSLEDIYVKTRSQGFGDEVKRRIMLGTFSLSSGYYDAYFKKAGQVRTLIIQDFEKVFA DYDLILGPTAPTAAFELDTLNHDPVAMYLADLLTIPVNLAGLPAISIPAGFADGLPVG LQLIGPKYSEEVIYQVAVAFEATTDYHKQQPMIFGGDR" misc_feature 448014..449336 /gene="gatA" /locus_tag="SEQ_0462" /inference="protein motif:PFAM:PF01425" /note="HMMPfam hit to PF01425, Amidase, score 1.4e-184" gene 449411..450850 /gene="gatB" /locus_tag="SEQ_0463" /db_xref="GeneID:7696328" CDS 449411..450850 /gene="gatB" /locus_tag="SEQ_0463" /note="allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA amidotransferase subunit B" /protein_id="YP_002745842.1" /db_xref="GI:225869895" /db_xref="GeneID:7696328" /translation="MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNASTNVIDWSF PGVLPVMNKGVIDAGIKAALALNMSIHQHMHFDRKNYFYPDNPKAYQISQFDEPIGYN GWIDITLEDGSTKKIRIERAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMR SPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEAFGTKTELKNLNS FSNVRKGLEFEVERQAKILRSGGVIRQETRRYDEASKGTILMRVKEGAADYRYFPEPD LPLFEIDDAWIEDMRAELPRFPADRRASYINALGLSAYDAGQLTATKALSDFFEQAVA LGGDPKQVSNWLQGEMAQFLNAEGKTIDQIALTPENLVEMIAIITDGTISSKIAKKVF VHLAKHGGSARAYVEKAGLVQISDPAVLIPIIHQVFADNEAAVADFKSGKRNADKAFT GFLMKATKGQANPQIAQQLLAQELQKLLD" misc_feature 449411..450130 /gene="gatB" /locus_tag="SEQ_0463" /inference="protein motif:PFAM:PF02934" /note="HMMPfam hit to PF02934, PET112 family, N terminal region, score 1.5e-143" misc_feature 450179..450385 /gene="gatB" /locus_tag="SEQ_0463" /inference="protein motif:PFAM:PF01162" /note="HMMPfam hit to PF01162, PET112 family, C terminal region, score 2.8e-29" misc_feature 450389..450832 /gene="gatB" /locus_tag="SEQ_0463" /inference="protein motif:PFAM:PF02637" /note="HMMPfam hit to PF02637, GatB/Yqey domain, score 1.9e-58" gene 451079..452023 /locus_tag="SEQ_0464" /db_xref="GeneID:7696329" CDS 451079..452023 /locus_tag="SEQ_0464" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745843.1" /db_xref="GI:225869896" /db_xref="GeneID:7696329" /translation="MSRNGKGSTMILLAGIAWGLSGVSGQYLIAHGVGINALTSLRLI ISGLVLSAMAYVRQREAVISLLKDKRLLRELLIYSLFGLTLNQYAYLLAIRYSNAGTA TVLQYLSPILVLVYLSFKSRRLPAVGESCAICLAILGTVIMACHGDLSHLAINPIGLF WGLFAAVTYAYCVIKPAKLIADWGSLLIVGLAMLMGGVIFPILTRAWQYPLAMTYGNL RALFGIIGIGTIFAYTFFLKGASIIGPIKATLLASIEPVASVCFAIILMKEIFHPIDL LGMALILIAVLVISLRDLLLTKRKKQLALNIKRPPSSD" sig_peptide 451079..451174 /locus_tag="SEQ_0464" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0464 by SignalP 2.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.330 between residues 32 and 33" misc_feature join(451097..451165,451175..451243,451301..451360, 451373..451432,451451..451519,451532..451600, 451625..451693,451721..451789,451826..451879, 451907..451966) /locus_tag="SEQ_0464" /inference="protein motif:TMHMM 2.0" /note="10 transmembrane helices predicted for SEQ0464 by TMHMM2.0 at aa 7-29, 33-55, 75-94, 99-118, 125-147, 152-174, 183-205, 215-237, 250-267 and 277-296" misc_feature 451124..451513 /locus_tag="SEQ_0464" /inference="protein motif:PFAM:PF00892" /note="HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.6e-12" misc_feature 451481..451513 /locus_tag="SEQ_0464" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 451565..451951 /locus_tag="SEQ_0464" /inference="protein motif:PFAM:PF00892" /note="HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.3e-16" gene 452074..452313 /locus_tag="SEQ_0465" /db_xref="GeneID:7696330" CDS 452074..452313 /locus_tag="SEQ_0465" /codon_start=1 /transl_table=11 /product="transglycosylase associated protein" /protein_id="YP_002745844.1" /db_xref="GI:225869897" /db_xref="GeneID:7696330" /translation="MVWSLIVGAIIGMVAGRITEKSHSMGCFTMTAAGLIGSAVGQKL FGDWGIQLAGMAVFPSILGAAIVIIVASALFGKKQ" misc_feature join(452077..452130,452230..452298) /locus_tag="SEQ_0465" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0465 by TMHMM2.0 at aa 2-19 and 53-75" misc_feature 452164..452301 /locus_tag="SEQ_0465" /inference="protein motif:PFAM:PF04226" /note="HMMPfam hit to PF04226, Transglycosylase associated protein, score 1.8e-12" gene 452510..453625 /gene="sfs" /locus_tag="SEQ_0466" /db_xref="GeneID:7696331" CDS 452510..453625 /gene="sfs" /locus_tag="SEQ_0466" /note="Previously sequenced as Streptococcus equi fibronectin-binding protein Sfs UniProt:Q9X6F4 (EMBL:AF136451 (371 aa) fasta scores: E()=1.8e-153, 100.000% id in 371 aa" /codon_start=1 /transl_table=11 /product="fibronectin-binding protein Sfs" /protein_id="YP_002745845.1" /db_xref="GI:225869898" /db_xref="GeneID:7696331" /translation="MRKTEGRFRTWKSKKQWLFAGAVVTSLLLGAALVFGGLLGSLGG SSHQARPKEQPVSSIGDDDKSHKSSSDSMVSRPPKKDNLQPKPSDQPTNHQHQATSPS QPTAKSSGHHGNQPQSLSVNSQGNSSGQASEPQAIPNQGPSQPLGLRGGNSSGSGHHH QPQGKPQHLDLGKDNSSPQPQPKPQGNSPKLPEKGLNGENQKEPEQGERGEAGPPLSG LSGNNQGRPSLPGLNGENQKEPEQGERGEAGPPSTPNLEGNNRKNPLKGLDGENKPKE DLDGKGLSGENDESPKLKDEHPYNHGRRDGYRVGYEDGYGGKKHKGDYPKRFDESSPK EYNDYSQGYNDNYGNGYLDGLADRGGKRGYGYSYNPD" sig_peptide 452510..452653 /gene="sfs" /locus_tag="SEQ_0466" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0466 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.437 between residues 48 and 49" misc_feature 452558..452626 /gene="sfs" /locus_tag="SEQ_0466" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0466 by TMHMM2.0 at aa 17-39" gene 453874..454155 /locus_tag="SEQ_0467" /db_xref="GeneID:7696947" CDS 453874..454155 /locus_tag="SEQ_0467" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745846.1" /db_xref="GI:225869899" /db_xref="GeneID:7696947" /translation="MRRCAMKAIITVVGKDNQGIVAGVSGQIAALGLNIDDISQTVLD DYFTMMAIVSSSEKQDFAHLREVLQAYGKQLQVTINIQSAAIFDAMHNI" misc_feature 453895..454113 /locus_tag="SEQ_0467" /inference="protein motif:PFAM:PF01842" /note="HMMPfam hit to PF01842, ACT domain, score 0.0033" gene 454170..455507 /locus_tag="SEQ_0468" /db_xref="GeneID:7696332" CDS 454170..455507 /locus_tag="SEQ_0468" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745847.1" /db_xref="GI:225869900" /db_xref="GeneID:7696332" /translation="MDIRQVRETVEMIEEQHFDIRTITMGISLLDCIDSDIDRAAAKI YQKITTKAANLVAVGDDIAAELGIPIVNKRVSVTPIALIGAATDAEDYLSLAKALDQA ACDIGVDFIGGFSALVQKGYQKGDKILIESIPQALAQTQKVCASVNVGSTRSGINMTA VADMGRIIKETAKASEIGAAKLVVFANAVEDNPFMAGAFHGVGEADTVINVGVSGPGV VKRALEKVRGESFDVLAETVKKTAFKITRIGQLVGQMASERLGVGFGVVDLSLAPTPA VGDSVARVLEEMGLEIVGTHGTTAALALLNDAVKKGGVMACNRVGGLSGAFIPVSEDE GMIAAVQGGSLNLEKLEAMTAICSVGLDMIAIPEETPSETIAAMIADEAAIGVINQKT TAVRIIPKGKEGDMIAFGGLLGTAPVMAVNPHSSADFIARGGQIPAPIHSFKN" misc_feature 454170..455504 /locus_tag="SEQ_0468" /inference="protein motif:PFAM:PF05167" /note="HMMPfam hit to PF05167, Uncharacterized ACR (DUF711), score 2.2e-270" gene 455582..456289 /locus_tag="SEQ_0469" /db_xref="GeneID:7696333" CDS 455582..456289 /locus_tag="SEQ_0469" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase family protein" /protein_id="YP_002745848.1" /db_xref="GI:225869901" /db_xref="GeneID:7696333" /translation="MTKTRLYIVRHGKTMFNTIGRAQGWSDTPLTKAGEEGIRELGLG LKAAGIPFKAAFSSDSGRTMQTMEIILRKSENEFLPYTRDKRIREWCFGSLDGAYDSE LFLGVLPRTKAFENRDNLRDVPYSELAESIVEVDTANWAEPWEVLSKRIYEGFEAIAL AVENAGGGNAIVVSHGMTIGTFMWLIDPDREKQYIDNGSVTVVEYENGQFTIKTIGDM SYRYRGREIIESIRDEE" misc_feature 455594..456127 /locus_tag="SEQ_0469" /inference="protein motif:PFAM:PF00300" /note="HMMPfam hit to PF00300, Phosphoglycerate mutase family, score 2.5e-37" gene 456279..457022 /locus_tag="SEQ_0470" /db_xref="GeneID:7696334" CDS 456279..457022 /locus_tag="SEQ_0470" /EC_number="3.4.16.4" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase" /protein_id="YP_002745849.1" /db_xref="GI:225869902" /db_xref="GeneID:7696334" /translation="MKNNTIRVLLQALVVLLFLSGVYLFIKPEKQAVGPKANQTVPAP KAAKQAKKTTDLPKVSTTDWQLVLVNRDHPQEEMSPELVEINGIPIDKRIEQETADFL AAAQTIEPQEHLIAGYRSVVQQEELYQSYIAQELANDPSLTQEAAEALVRKYAQPAGT SEHQTGLAIDMSTVDNLNASDPKVAQEIQKIAPQFGFILRYPKGKQTSTGIEYEDWHY RYVGKASALYITAHSLSLEEYLTRLKEKK" sig_peptide 456279..456371 /locus_tag="SEQ_0470" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0470 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.681 between residues 31 and 32" misc_feature 456297..456356 /locus_tag="SEQ_0470" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0470 by TMHMM2.0 at aa 7-26" misc_feature 456537..456947 /locus_tag="SEQ_0470" /inference="protein motif:PFAM:PF02557" /note="HMMPfam hit to PF02557, D-alanyl-D-alanine carboxypeptidase, score 1.8e-50" gene 457019..457591 /locus_tag="SEQ_0471" /db_xref="GeneID:7696335" CDS 457019..457591 /locus_tag="SEQ_0471" /codon_start=1 /transl_table=11 /product="N-acetyl-muramidase" /protein_id="YP_002745850.1" /db_xref="GI:225869903" /db_xref="GeneID:7696335" /translation="MRKRLKFSYFLVFLVFIMVALIGPLLFNAKGTSASQEMSVPYTE RQFIQLVAKEVKPLAKNYGIRPSILIGQIILETNYGRTLLAAKYHNLFSLQPAPGQAS ISLKKQAASKHKTAYAIYRDREDSIRAYLSWLSQGTGEEKKLYQSLATEKGYKKPAKS LQTYRYSDDKGYAQRLVQLIEARGLTSYDD" sig_peptide 457019..457120 /locus_tag="SEQ_0471" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0471 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.362 between residues 34 and 35" misc_feature 457037..457105 /locus_tag="SEQ_0471" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0471 by TMHMM2.0 at aa 7-29" misc_feature 457169..457573 /locus_tag="SEQ_0471" /inference="protein motif:PFAM:PF01832" /note="HMMPfam hit to PF01832, Mannosyl-glycoprotein endo-beta-N-ace, score 0.002" gene 458041..459075 /gene="hrcA" /locus_tag="SEQ_0472" /db_xref="GeneID:7696336" CDS 458041..459075 /gene="hrcA" /locus_tag="SEQ_0472" /codon_start=1 /transl_table=11 /product="heat-inducible transcription repressor HrcA" /protein_id="YP_002745851.1" /db_xref="GI:225869904" /db_xref="GeneID:7696336" /translation="MITERQSNILNLIVDLFTQTHEPVGSKALQSLIASSSATIRNDM AKLEKLGLLEKAHTSSGRMPSAAGFKYFVEHSLNLGSIDEQDLYQLVKAFDFEAFKLE DVLLRASQMLSDTTGYTAAILDVEPARQRLTGFDIVQLSSHDALAVLSLDESKPLTVQ FAIPKNFMNRDLLVLKGIVADRLLGKDVMTVHYKLRTEIPQIVQKYFTVTDNVLDLFD YIFVGLFRETIFVSGKVAALDYAGLATYQFLDEEQRLALSIRQSLSEEEMATVQVADS SEPALANVTLLTYKFLIPYRGFGLLSLIGPVDMDYRRSVSLINVIGQLLAVKLRDYYR YLNSNHYEVH" misc_feature 458341..458985 /gene="hrcA" /locus_tag="SEQ_0472" /inference="protein motif:PFAM:PF01628" /note="HMMPfam hit to PF01628, HrcA protein C terminal domain, score 1.8e-52" misc_feature 458785..458838 /gene="hrcA" /locus_tag="SEQ_0472" /inference="protein motif:PFAM:PF02809" /note="HMMPfam hit to PF02809, no description, score 0.59" gene 459120..459689 /locus_tag="SEQ_0473" /db_xref="GeneID:7696337" CDS 459120..459689 /locus_tag="SEQ_0473" /codon_start=1 /transl_table=11 /product="GrpE protein (HSP-70 cofactor)" /protein_id="YP_002745852.1" /db_xref="GI:225869905" /db_xref="GeneID:7696337" /translation="MSKKPKEELKDQEDILDEAAEEAVEPVEEADQSAELIADEAAEE PSELELALQRAEDFENKYLRAHAEMQNIQRRANEERQSLQRYRSQDLAKKILPSLDNL ERALAVEGLTDDVKKGLEMVQESLVQALKEEGIEEVPVEAFDHNLHMAVQTLPADDDH PADSIAQVFQKGYKLHERLLRPAMVVVYN" misc_feature 459168..459686 /locus_tag="SEQ_0473" /inference="protein motif:PFAM:PF01025" /note="HMMPfam hit to PF01025, GrpE, score 2.9e-59" misc_feature 459546..459680 /locus_tag="SEQ_0473" /inference="protein motif:Prosite:PS01071" /note="PS01071 grpE protein signature." gene 460094..461923 /gene="dnaK" /locus_tag="SEQ_0474" /db_xref="GeneID:7696338" CDS 460094..461923 /gene="dnaK" /locus_tag="SEQ_0474" /codon_start=1 /transl_table=11 /product="chaperone protein DnaK (heat shock protein 70)" /protein_id="YP_002745853.1" /db_xref="GI:225869906" /db_xref="GeneID:7696338" /translation="MSKIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVVSFKN GEIIVGDAAKRQAVTNPDTVISIKSKMGTSEKVAANGKEYTPQEISAMILQYLKGYAE DYLGEKVTKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDK EEKILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDFLVAEFKKEN GIDLSQDKMALQRLKDAAEKAKKDLSGVTQTQISLPFITAGAAGPLHLEMSLSRAKFD DLTRDLVERTKVPVRQALSDAGLSLSEIDEVILVGGSTRIPAVVEAVKAETGKEPNKS VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSK SQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGIPQIEVTFDIDK NGIVSVKAKDLGTQKEQHIVIKSNDGLSEEEIERMMKDAEANAEADAKRKEEVDLKNE VDQAIFATEKTIKETEGKGFDTERDAAQTALDELKKAQESGDLDDMKAKLEALNEKAQ ALAVKMYEQAAAAQQAQAGAEGAADTGSTNSGDDVVDGEFTEK" misc_feature 460103..461815 /gene="dnaK" /locus_tag="SEQ_0474" /inference="protein motif:PFAM:PF00012" /note="HMMPfam hit to PF00012, Hsp70 protein, score 0" misc_feature 460112..460135 /gene="dnaK" /locus_tag="SEQ_0474" /inference="protein motif:Prosite:PS00297" /note="PS00297 Heat shock hsp70 proteins family signature 1." misc_feature 460589..460630 /gene="dnaK" /locus_tag="SEQ_0474" /inference="protein motif:Prosite:PS00329" /note="PS00329 Heat shock hsp70 proteins family signature 2." misc_feature 461012..461056 /gene="dnaK" /locus_tag="SEQ_0474" /inference="protein motif:Prosite:PS01036" /note="PS01036 Heat shock hsp70 proteins family signature 3." gene 462080..463216 /locus_tag="SEQ_0475" /db_xref="GeneID:7696339" CDS 462080..463216 /locus_tag="SEQ_0475" /codon_start=1 /transl_table=11 /product="chaperone protein DnaJ" /protein_id="YP_002745854.1" /db_xref="GI:225869907" /db_xref="GeneID:7696339" /translation="MNNTEYYDRLGVSKDASADDIKRAYRKMSKKYHPDINKEPGAEQ KYKDVQEAYETLSDSQKRAAYDQYGAAGANGGFGGGAGGFGGFDGGGFGGFEDIFSSF FGGGGMRNPNAPRQGDDLQYRVNLSFEEAVFGTEKEVSYHRESTCSTCAGSGAKPGTS PTTCRKCHGSGVINVDTQTPLGMMRRQVTCDVCHGSGQEIKEPCHTCHGTGHEKKVHK VSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLFVILNVLPSKQFERNGSTIYYSLNI SFVQAALGDTVDIPTVHGDVAMSIPAGTQTGKVFRLKGKGAPKLRGGGQGDQHVTVNI VTPTKLNEAQKEALKAFAEASGEKPIAPKKKGFFDKVKDALEDI" misc_feature 462092..462277 /locus_tag="SEQ_0475" /inference="protein motif:PFAM:PF00226" /note="HMMPfam hit to PF00226, DnaJ domain, score 6.7e-33" misc_feature 462215..462274 /locus_tag="SEQ_0475" /inference="protein motif:Prosite:PS00636" /note="PS00636 Nt-dnaJ domain signature." misc_feature 462329..462376 /locus_tag="SEQ_0475" /inference="protein motif:Prosite:PS00225" /note="PS00225 Crystallins beta and gamma 'Greek key' motif signature." misc_feature 462479..462733 /locus_tag="SEQ_0475" /inference="protein motif:PFAM:PF00684" /note="HMMPfam hit to PF00684, DnaJ central domain (4 repeats), score 2.7e-33" misc_feature 462518..462592 /locus_tag="SEQ_0475" /inference="protein motif:Prosite:PS00637" /note="PS00637 CXXCXGXG dnaJ domain signature." misc_feature 462569..462586 /locus_tag="SEQ_0475" /inference="protein motif:Prosite:PS00190" /note="PS00190 Cytochrome c family heme-binding site signature." misc_feature 462647..462664 /locus_tag="SEQ_0475" /inference="protein motif:Prosite:PS00190" /note="PS00190 Cytochrome c family heme-binding site signature." misc_feature 462770..463135 /locus_tag="SEQ_0475" /inference="protein motif:PFAM:PF01556" /note="HMMPfam hit to PF01556, DnaJ C terminal region, score 2.5e-66" gene 463536..464327 /locus_tag="SEQ_0476" /db_xref="GeneID:7696340" CDS 463536..464327 /locus_tag="SEQ_0476" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase family protein" /protein_id="YP_002745855.1" /db_xref="GI:225869908" /db_xref="GeneID:7696340" /translation="MTFQNIIFELEEDLAILTLNRPEVSNGFNIPACQEILEAIRLVK DNPSLRFLVIKAKGKVFSVGGDLVEMQNAVERDDVQSLVRIAELVQDISFAIKQLPKP VILCADGAVAGAAFNIALAVDFCIASTQTKFIQAFVNVGLAPDAGGLFLLTRAVGLNR ATHLVMTGEGVTAEKGLEYGFVYRAAESDKLDKTCSQLLKRLRRGSSNSYAGMKSLVW QSFFAGWEDYAQKELAIQEELAFKEDFKEGVRAYGDRRRPNFRGK" misc_feature 463578..464096 /locus_tag="SEQ_0476" /inference="protein motif:PFAM:PF00378" /note="HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 1.9e-23" gene 464407..464841 /locus_tag="SEQ_0477" /db_xref="GeneID:7696341" CDS 464407..464841 /locus_tag="SEQ_0477" /codon_start=1 /transl_table=11 /product="MarR family regulatory protein" /protein_id="YP_002745856.1" /db_xref="GI:225869909" /db_xref="GeneID:7696341" /translation="MEYNKINQYLVDIFNRILVIEEMSLKTSQFNDVSLKEMHTIEII GKYQQVTPSDIARELMVTLGTVTTSLNKLELKGYIERTRSSVDRRVVYLSLTKKGRLL DRLHARFHKNMVGHVIADMNEDEMQALLRGLGNLHQFLEDLV" misc_feature 464503..464811 /locus_tag="SEQ_0477" /inference="protein motif:PFAM:PF03965" /note="HMMPfam hit to PF03965, Penicillinase repressor, score 0.0016" misc_feature 464503..464712 /locus_tag="SEQ_0477" /inference="protein motif:PFAM:PF01047" /note="HMMPfam hit to PF01047, MarR family, score 2.9e-19" misc_feature 464554..464619 /locus_tag="SEQ_0477" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1065.000, SD 2.81 at aa 50-71, sequence VTPSDIARELMVTLGTVTTSLN" misc_feature 464560..464589 /locus_tag="SEQ_0477" /inference="protein motif:Prosite:PS00215" /note="PS00215 Mitochondrial energy transfer proteins signature." gene 464841..465815 /locus_tag="SEQ_0478" /db_xref="GeneID:7696342" CDS 464841..465815 /locus_tag="SEQ_0478" /EC_number="2.3.1.41" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] synthase III" /protein_id="YP_002745857.1" /db_xref="GI:225869910" /db_xref="GeneID:7696342" /translation="MVFSKISQVAHYTPKQVISNDDLSQIMDTSHEWISSRTGIEKRH ISTVEMTSDLAIRVAEQLLAGSGYDATALDFIIVATISPDASMPSTAAKVQAAIGATN AFAFDMTAACSGFVFALAMADKLIASGAYQRGLVIGAETLSKIIDWQDRSTAVLFGDG AGGVLLEASEQQHFLAEALHTDGAQGQSLTSGQSSLRSPFSQGQEVNSFLQMDGRAIF DFAIRDVSRSITAIIEQSGLAKEELDYLLLHQANRRILDKMAKKIGMPREKFLENMMH YGNTSAASIPILLSESVQNGQLKLDGSQHILLSGFGGGLTWGSLIVKI" misc_feature 465156..465389 /locus_tag="SEQ_0478" /inference="protein motif:PFAM:PF08545" /note="HMMPfam hit to PF08545, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 7.3e-47" misc_feature 465537..465812 /locus_tag="SEQ_0478" /inference="protein motif:PFAM:PF08541" /note="HMMPfam hit to PF08541, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 5.3e-45" gene 465873..466097 /gene="acpP" /locus_tag="SEQ_0479" /db_xref="GeneID:7696343" CDS 465873..466097 /gene="acpP" /locus_tag="SEQ_0479" /codon_start=1 /transl_table=11 /product="acyl carrier protein (ACP)" /protein_id="YP_002745858.1" /db_xref="GI:225869911" /db_xref="GeneID:7696343" /translation="MAVFEKVQEIIVEELGKDAEEVTLETTFDDLDADSLDVFQVISE IEDAFDIQIETEEGLNTVGDLVAYVEEKTK" misc_feature 465885..466079 /gene="acpP" /locus_tag="SEQ_0479" /inference="protein motif:PFAM:PF00550" /note="HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 5.1e-12" gene 466292..467278 /locus_tag="SEQ_0480" /db_xref="GeneID:7696344" CDS 466292..467278 /locus_tag="SEQ_0480" /EC_number="1.3.1.9" /codon_start=1 /transl_table=11 /product="enoyl-ACP reductase" /protein_id="YP_002745859.1" /db_xref="GI:225869912" /db_xref="GeneID:7696344" /translation="MKTRITELLNIDYPIFQGGMAWVADGDLAGAVSNAGGLGIIGGG NAPKEVVKANIDRVKAITDKPFGVNIMLLSPFADDIVDLVIEEGVKVVTTGAGNPGKY MERLHEAGIIVIPVVPSVALAKRMEKLGVDAVIAEGMEAGGHIGKLTTMTLVRQVVDA VSIPVIAAGGIADGRGAAAAFMLGAEAVQVGTRFVVAKESNAHQSFKDKILKAKDIDT VISAQVVGHPVRSIKNKLTSAYAKAEKEFLADRKAASDIEEMGAGALRNAVIDGDVIN GSVMAGQIAGLIRAEESCEAILKDIYYGAAAVISQEAKRWQALAADDKNETI" misc_feature 466295..467203 /locus_tag="SEQ_0480" /inference="protein motif:PFAM:PF03060" /note="HMMPfam hit to PF03060, 2-nitropropane dioxygenase, score 1.3e-107" misc_feature 466784..466846 /locus_tag="SEQ_0480" /inference="protein motif:Prosite:PS00912" /note="PS00912 Dihydroorotate dehydrogenase signature 2." gene 467291..468211 /locus_tag="SEQ_0481" /db_xref="GeneID:7696345" CDS 467291..468211 /locus_tag="SEQ_0481" /EC_number="2.3.1.39" /codon_start=1 /transl_table=11 /product="malonyl CoA-acyl carrier protein transacylase" /protein_id="YP_002745860.1" /db_xref="GI:225869913" /db_xref="GeneID:7696345" /translation="MTKTAFLFAGQGAQTLGMTRDLYDQYAIARDTFDQASQLLGYDL RKLIDTDQDRLNQTAYTQPAILTASVSIYRILTSYGVHPDMVAGLSLGEYSALVAAGV LSFETALELVAKRGRFMEEAAPAGSGKMVAVMNTEARLIEEACQEASSVGVVSPANYN TPGQIVIGGTAEAVNAALEILKAKGVKRLIPLNVSGPFHTALLAPASQRLAEELSKIQ FQDFDLPLVGNTEAKVMEKDRIAELLARQVMEPVRFYDSIEVMKANGITQFVEIGPGR VLTGFIKKIDKKLLCSSVEDMPSLQLYLGK" misc_feature 467303..468208 /locus_tag="SEQ_0481" /inference="protein motif:PFAM:PF00698" /note="HMMPfam hit to PF00698, Acyl transferase domain, score 2.4e-16" gene 468228..468962 /gene="fabG" /locus_tag="SEQ_0482" /db_xref="GeneID:7696346" CDS 468228..468962 /gene="fabG" /locus_tag="SEQ_0482" /EC_number="1.1.1.100" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier protein] reductase" /protein_id="YP_002745861.1" /db_xref="GI:225869914" /db_xref="GeneID:7696346" /translation="MEIKGKNVFITGSTRGIGLAMAHQFAGLGANIVLNGRSAISDEL VETFKDYGVKVVPISGDVSEGADAKRMVDEAIEQLGSVDILINNAGITNDKLMLKMSE EDFERVLKINLTGAFNMTQSVLKPMTKARQGAIINVSSVVGLTGNIGQANYAASKAGL IGFTKSVAREVAARGIRVNAIAPGFIESDMTGVLSEKMQEQILNQIPMKRIGKGQEVA QAASFLASQDYITGQVLAIDGGMTMQ" misc_feature 468243..468743 /gene="fabG" /locus_tag="SEQ_0482" /inference="protein motif:PFAM:PF00106" /note="HMMPfam hit to PF00106, short chain dehydrogenase, score 4e-47" misc_feature 468255..468890 /gene="fabG" /locus_tag="SEQ_0482" /inference="protein motif:PFAM:PF07993" /note="HMMPfam hit to PF07993, Male sterility protein, score 0.0008" misc_feature 468645..468731 /gene="fabG" /locus_tag="SEQ_0482" /inference="protein motif:Prosite:PS00061" /note="PS00061 Short-chain dehydrogenases/reductases family signature." misc_feature 468693..468740 /gene="fabG" /locus_tag="SEQ_0482" /inference="protein motif:Prosite:PS00038" /note="PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature." gene 468978..470210 /locus_tag="SEQ_0483" /db_xref="GeneID:7696347" CDS 468978..470210 /locus_tag="SEQ_0483" /EC_number="2.3.1.41" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] synthase II" /protein_id="YP_002745862.1" /db_xref="GI:225869915" /db_xref="GeneID:7696347" /translation="MTLNRVVVTGYGVTSPIGHTPEEFWSSLKAGHIGIKPITKFDTS DFAVKNAAEIQDFPFDKYFVKKDLNRFDMYSLYALYAATEAIEHAGLDIEAIDSDRFG VIVASGIGGIQEIEEQVIRLHEKGPKRVKPMTLPKALPNMAAGNVAMKLNAQGVCKSI NTACASSNDAIGDAFRTIKFGLQDVMMVGGSEAAITKFAIAGFQSLTALSTTEDPSRS SIPFDKDRNGFIMGEGSGMLVLESLEHAQKRGATILAEIVGYGNTCDAYHMTSPHPEG LGARKAINLALQEAGIDAAAIDYVNAHGTSTPANEKGESQAIVAVLGKEVPVSSTKSF TGHLLGAAGAVEAIATIEAIRHNYVPMTAGTKELSDDIEANVIFGQGKEADIRYAMSN TFGFGGHNAVLAFKRWED" misc_feature 468987..469715 /locus_tag="SEQ_0483" /inference="protein motif:PFAM:PF00109" /note="HMMPfam hit to PF00109, Beta-ketoacyl synthase, N-terminal do, score 6.8e-65" misc_feature 469440..469490 /locus_tag="SEQ_0483" /inference="protein motif:Prosite:PS00606" /note="PS00606 Beta-ketoacyl synthases active site." misc_feature 469455..469511 /locus_tag="SEQ_0483" /inference="protein motif:Prosite:PS00098" /note="PS00098 Thiolases acyl-enzyme intermediate signature." misc_feature 469737..470201 /locus_tag="SEQ_0483" /inference="protein motif:PFAM:PF02801" /note="HMMPfam hit to PF02801, Beta-ketoacyl synthase, C-terminal do, score 6.3e-59" gene 470212..470685 /locus_tag="SEQ_0484" /db_xref="GeneID:7696348" CDS 470212..470685 /locus_tag="SEQ_0484" /EC_number="6.4.1.2" /codon_start=1 /transl_table=11 /product="biotin carboxyl carrier protein of acetyl-CoA carboxylase" /protein_id="YP_002745863.1" /db_xref="GI:225869916" /db_xref="GeneID:7696348" /translation="MNIQEIKDLMAQFDASSLREFSFKSSDGELLFSKNEHRPMAAPA PEPVTLHQEVAPISLTQEIVSKQESIPASSGLQEPEGEVVDSPLVGVAYLAAGPDKPP FVTVGDSVKKGQTLLIVEAMKVMNEIPAPCDGIVTEILVANEDVVEFGQGLVRIK" misc_feature 470455..470679 /locus_tag="SEQ_0484" /inference="protein motif:PFAM:PF00364" /note="HMMPfam hit to PF00364, Biotin-requiring enzyme, score 7.4e-25" gene 470682..471104 /gene="fabZ" /locus_tag="SEQ_0485" /db_xref="GeneID:7696349" CDS 470682..471104 /gene="fabZ" /locus_tag="SEQ_0485" /codon_start=1 /transl_table=11 /product="(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase" /protein_id="YP_002745864.1" /db_xref="GI:225869917" /db_xref="GeneID:7696349" /translation="MMDIKQIQEALPHRYPMLLVDRILEASDDEIVAIKNVTINEPFF NGHFPQYPVMPGVLIMEALAQTAGVLELSKEENKGKLVFYAGMDKVKFKKQVVPGDQL VMTARFIKRRGTIAVVEAKAEVDGKLAASGTLTFAFGQ" misc_feature 470712..471080 /gene="fabZ" /locus_tag="SEQ_0485" /inference="protein motif:PFAM:PF07977" /note="HMMPfam hit to PF07977, FabA-like domain, score 1.5e-68" gene 471138..472502 /locus_tag="SEQ_0486" /db_xref="GeneID:7696350" CDS 471138..472502 /locus_tag="SEQ_0486" /EC_number="6.3.4.14" /codon_start=1 /transl_table=11 /product="biotin carboxylase subunit of acetyl-CoA carboxylase" /protein_id="YP_002745865.1" /db_xref="GI:225869918" /db_xref="GeneID:7696350" /translation="MFNKILIANRGEIAVRIIRAARELGISTVAVYSEADREALHTIL ADQAICIGPSRSKESYLNMNSVLSAAVVTGAQAIHPGFGFLSENSKFVTMCEEMNIKF IGPSGAVMDKMGDKINARAEMIKAGVPVIPGSDGEVYNAQEALEIARQIGYPVMLKAA AGGGGKGIRKVESEADLEAAFNAASQEALGAFGNGAMYLEKVIYPARHIEVQILGDSQ GHVIHLGERDCSLQRNNQKVLEESPSIAIGTTLRQRMGEAAVRAAKAVSYENAGTIEF LLDEASGDFYFMEMNTRVQVEHPVTEFVTGVDIVKEQLRIAAGLPLSVRQEDIVITGH AIECRINAENPSFNFAPSPGKITDLYLPSGGVGLRIDSAVYSGYTIPPYYDSMIAKII VHGDNRFDALMKMQRALFELEIEGIMTNIDFQMDLISDKQVIAGDYDTSFLMETFLPS YNKD" misc_feature 471138..471476 /locus_tag="SEQ_0486" /inference="protein motif:PFAM:PF00289" /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 6.9e-43" misc_feature 471480..472127 /locus_tag="SEQ_0486" /inference="protein motif:PFAM:PF02786" /note="HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 4.3e-95" misc_feature 471594..471638 /locus_tag="SEQ_0486" /inference="protein motif:Prosite:PS00866" /note="PS00866 Carbamoyl-phosphate synthase subdomain signature 1." misc_feature 471909..471959 /locus_tag="SEQ_0486" /inference="protein motif:Prosite:PS00238" /note="PS00238 Visual pigments (opsins) retinal binding site." misc_feature 471996..472019 /locus_tag="SEQ_0486" /inference="protein motif:Prosite:PS00867" /note="PS00867 Carbamoyl-phosphate synthase subdomain signature 2." misc_feature 472146..472469 /locus_tag="SEQ_0486" /inference="protein motif:PFAM:PF02785" /note="HMMPfam hit to PF02785, Biotin carboxylase C-terminal domain, score 2.4e-53" gene 472511..473377 /locus_tag="SEQ_0487" /db_xref="GeneID:7696351" CDS 472511..473377 /locus_tag="SEQ_0487" /EC_number="6.4.1.2" /codon_start=1 /transl_table=11 /product="acetyl-coenzyme A carboxylase carboxyl transferase subunit beta" /protein_id="YP_002745866.1" /db_xref="GI:225869919" /db_xref="GeneID:7696351" /translation="MALFSKKDKYIRITPNNSLKSSVSRNVPEVPDELFAKCPACKHM IYQKDLGPAKICPTCSYNFRISAQERLTLTVDEGSFQELFTDIETKDPLRFPDYQAKL QKARQATGLHEAVLTGTALVKGQRLALAIMDSHFIMASMGTVVGEKITRLFELAISER LPVVIFTASGGARMQEGIMSLMQMAKVSAAIKKHSNAGLFYLTILTDPTTGGVTASFA MEGDMIIAEPQSLVGFAGRRVIETTVRENLPDDFQKAEFLKEHGFVDAIVKRTDLRDR IAHLVAFHGGVS" gene 473374..474144 /locus_tag="SEQ_0488" /db_xref="GeneID:7696352" CDS 473374..474144 /locus_tag="SEQ_0488" /EC_number="6.4.1.2" /codon_start=1 /transl_table=11 /product="acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha" /protein_id="YP_002745867.1" /db_xref="GI:225869920" /db_xref="GeneID:7696352" /translation="MTDVARILKEARDQGRMTALDYASLIFDEFMELHGDRQFADDGS IVGGIAYLADQPVTVIGIQKGKNLQDNLARNFGQPHPEGYRKALRLMKQAEKFGRPVI TFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQ VWMLENTMYAVLSPEGFASILWKDGSRATEAAELMKITAAELYQMGVIDRIIPERGYF SSEIVEMIKSHLIDEITQLQAKPLEELLDQRYQRFRKY" misc_feature 473377..473658 /locus_tag="SEQ_0488" /inference="protein motif:PFAM:PF03255" /note="HMMPfam hit to PF03255, Acetyl co-enzyme A carboxylase carboxyltrans, score 7.3e-22" gene complement(474376..475653) /locus_tag="SEQ_0489" /db_xref="GeneID:7696353" CDS complement(474376..475653) /locus_tag="SEQ_0489" /EC_number="6.1.1.11" /codon_start=1 /transl_table=11 /product="seryl-tRNA synthetase" /protein_id="YP_002745868.1" /db_xref="GI:225869921" /db_xref="GeneID:7696353" /translation="MLDLKRIRTDFDTVAAKLKTRGVSEAILTSLKALDEQRRTLLVQ TEELKAQRNIASAAIAQAKRQKEDASQQIADMQQLAANIKAIDAKLADIDQEITGIIT VLPNTPHDSVPIGADEEDNVEIHRWGKPRQFDFDIKAHWDLGEALDILDWERGAKVTG ARFLFYKNLGARLERALYNFMLDEHLKEGYQEIIPPYMVNHDSMFGTGQYPKFKEDTF ELDGTNFVLIPTAEVPLTNYYRGDIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIR LHQFHKVEMVKFAKPETSYEELEKMTANAEHILQKLKLPYRVLALCTGDMGFSAAKTY DLEVWIPAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTV AAILENYQNEDGSVTIPEVLRPYMGGLEVIKPR" misc_feature complement(474625..475137) /locus_tag="SEQ_0489" /inference="protein motif:PFAM:PF00587" /note="HMMPfam hit to PF00587, tRNA synthetase class II core domain (G,, score 9.3e-70" misc_feature complement(474802..474876) /locus_tag="SEQ_0489" /inference="protein motif:Prosite:PS00179" /note="PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1." misc_feature complement(475330..475653) /locus_tag="SEQ_0489" /inference="protein motif:PFAM:PF02403" /note="HMMPfam hit to PF02403, Seryl-tRNA synthetase N-terminal domain, score 2.4e-44" gene 476307..477305 /locus_tag="SEQ_0490" /db_xref="GeneID:7696354" CDS 476307..477305 /locus_tag="SEQ_0490" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745869.1" /db_xref="GI:225869922" /db_xref="GeneID:7696354" /translation="MFMIVITHVLGKGGLRSTVEGEADSYFIVTWMIQVLVYGAVNCY ALISGYVGIKSPYKYSKIVNIWVQVFFYSFLMTLLFALFGFPVSLENWRQALFPIVSG NYWYITAYFGLLIFMPMINGGLNTLSNKQLGRLVLLVFAIFSLIPALMNQQVDEFSLS KGFEMTWLIILYIIGAYLRRIELSRFSHKLLIAVYMGSLVVTYIMKFMVGNIWYWYVS PSLTLGAIALFILFAKLKLTSETLLLRFIVIVSPTTLGIYLVHLHPLLVKFIIRDFAE PFVNAPILLYPLLIFGVGIVIYFLSFLVEQARLMLFKKLGFQNLLKWVDKKIPFAD" misc_feature join(476397..476465,476499..476567,476610..476678, 476697..476756,476799..476855,476874..476933, 476943..477011,477030..477092,477150..477218) /locus_tag="SEQ_0490" /inference="protein motif:TMHMM 2.0" /note="9 transmembrane helices predicted for SEQ0490 by TMHMM2.0 at aa 31-53, 65-87, 102-124, 131-150, 165-183, 190-209, 213-235, 242-262 and 282-304" gene complement(477626..478009) /locus_tag="SEQ_0491" /db_xref="GeneID:7696705" CDS complement(477626..478009) /locus_tag="SEQ_0491" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745870.1" /db_xref="GI:225869923" /db_xref="GeneID:7696705" /translation="MAQSLNQRVILQTTAVSYLGIGGKVGKILLGDKALEFYNDKNVE DFIQIPWTAINQIGANVSGKKVSRHFEIFTDQGKFLFASKDSGKILKVARETIGNDKV IKLPTLVQTIIAKLFHHQKKDKKSH" misc_feature complement(477644..478009) /locus_tag="SEQ_0491" /inference="protein motif:PFAM:PF06115" /note="HMMPfam hit to PF06115, Domain of unknown function (DUF956), score 2.8e-75" gene complement(478143..479054) /locus_tag="SEQ_0492" /db_xref="GeneID:7696706" CDS complement(478143..479054) /locus_tag="SEQ_0492" /EC_number="2.7.1.69" /codon_start=1 /transl_table=11 /product="mannose-specific phosphotransferase system (PTS), IID component" /protein_id="YP_002745871.1" /db_xref="GI:225869924" /db_xref="GeneID:7696706" /translation="MTEQIKLTKADRKRVWWRSQFLQGSWNYERMQNMGWAYALIPAL KKLYTTKEDRAAALERHMEFFNTHPYVAAPIIGVTLALEEERANGTAIDNAAIQGVKI GMMGPLAGIGDPVFWFTVRPILGALGASLAQTGNLVGPLLFFFGWNIIRMAFLWYTQE FGYKAGSEITKDMSGGILQDITKGASILGMFILAVLVQRWVSINFTINLPGKQLSEGA YVVFPEGAVKGAELKSILGQAMGGMSLDKVQSQTLQGQLDSLIPGLAGLLLTFLCMWL LKKKVSPIAIIIALFAFGIIAHLLHIM" misc_feature complement(join(478149..478205,478224..478277, 478446..478514,478614..478682)) /locus_tag="SEQ_0492" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0492 by TMHMM2.0 at aa 125-147, 181-203, 260-277 and 284-302" gene complement(479070..479879) /locus_tag="SEQ_0493" /db_xref="GeneID:7696707" CDS complement(479070..479879) /locus_tag="SEQ_0493" /EC_number="2.7.1.69" /codon_start=1 /transl_table=11 /product="mannose-specific phosphotransferase system (PTS), IIC component" /protein_id="YP_002745872.1" /db_xref="GI:225869925" /db_xref="GeneID:7696707" /translation="MSDISLISAILVVIVAFFAGLEGILDQFQMHQPLVACTLIGLVT GHLEAGVMLGGTLQMLALGWANIGAAVAPDAALASVAAAIIMVKGGDFTQKGITFAYS TAIPLAVAGLFLTMIVRTISTVLVHAGDKAALEGNFSAIERFHFAALLLQGLRIAVPA ALLVAVPTEAVQSVLKAMPAWLNEGMQIGGAMVVAVGYALVINMMATREVWPFFALGF ALAAVTQLTLIAMGVIGVAIAFIYLNLSKQGGNGGGRAGSADPIGDILEDY" misc_feature complement(join(479151..479219,479262..479321, 479382..479450,479517..479585,479619..479687, 479715..479783,479817..479870)) /locus_tag="SEQ_0493" /inference="protein motif:TMHMM 2.0" /note="7 transmembrane helices predicted for SEQ0493 by TMHMM2.0 at aa 4-21, 33-55, 65-87, 99-121, 144-166, 187-206 and 221-243" misc_feature complement(479154..479870) /locus_tag="SEQ_0493" /inference="protein motif:PFAM:PF03609" /note="HMMPfam hit to PF03609, PTS system sorbose-specific iic component, score 2.2e-137" gene complement(480050..481042) /locus_tag="SEQ_0494" /db_xref="GeneID:7696708" CDS complement(480050..481042) /locus_tag="SEQ_0494" /EC_number="2.7.1.69" /codon_start=1 /transl_table=11 /product="mannose-specific phosphotransferase system (PTS), IIAB component" /protein_id="YP_002745873.1" /db_xref="GI:225869926" /db_xref="GeneID:7696708" /translation="MGIGIIIASHGKFAEGIHQSGSMIFGEQEKVQVVTFMPNEGPDD LYGHFNNAIAQFDADDEILVLADLWSGSPFNQASRVAGENPDRKMAIITGLNLPMLIQ AYTERLMDANAGVEQVAANIIKESKDGIKALPEELNPVEEASTANGGGQALQGAIPKG TVIGDGKLKINLARIDTRLLHGQVATAWTPASKADRIIVASDSVAKDELRKQLIKQAA PGGVKANVVPINKLIEASKDPRFGNTHALILFETVQDALRAIEGGVEIKELNVGSIAH STGKTMVNNVLSMDKDDVAAFEKLRDLGVSFDVRKVPNDSKKNLFELIQKANVQ" misc_feature complement(480086..480538) /locus_tag="SEQ_0494" /inference="protein motif:PFAM:PF03830" /note="HMMPfam hit to PF03830, PTS system sorbose subfamily IIB componen, score 7.2e-87" misc_feature complement(480674..481036) /locus_tag="SEQ_0494" /inference="protein motif:PFAM:PF03610" /note="HMMPfam hit to PF03610, PTS system fructose IIA component, score 9.2e-55" gene complement(481394..482205) /locus_tag="SEQ_0495" /pseudo /db_xref="GeneID:7696709" misc_feature complement(481394..482205) /locus_tag="SEQ_0495" /note="CDS contains a frameshift after codon 128. Frameshift occurs at a poly T pentamer. Similar to Streptococcus pyogenes serotype M18 hypothetical protein Spym18_1809 UniProt:Q8NZP0 (EMBL:AE010088 (270 aa) fasta scores: E()=3.1e-86, 83.704% id in 270 aa" /pseudo /db_xref="PSEUDO:CAW92714.1" gene complement(481726..482190) /locus_tag="SEQ_0496" /db_xref="GeneID:7696710" misc_feature complement(481726..482190) /locus_tag="SEQ_0496" /inference="protein motif:PFAM:PF08282" /note="HMMPfam hit to PF08282, haloacid dehalogenase-like hydrolase, score 5.2e-06" gene 482464..483924 /locus_tag="SEQ_0497" /db_xref="GeneID:7696711" CDS 482464..483924 /locus_tag="SEQ_0497" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_002745874.1" /db_xref="GI:225869927" /db_xref="GeneID:7696711" /translation="MEKFFKLKENGTTVSTELMAGVTTFFAMSYILFVNPSILSAAGM PSQAVFLATIIAAAISTLIMGLFANVPYALAPGMGLNAFFTYTVVFSLGFSWQEALAI VFLCGLFNIFITVTKLRKSIIKAIPVSLQHAIGGGIGVFVAYLGFKNANLITFSLSSA EIVTVNGVEPAKATAETFANGVFSVNANGGVVPAISTFTDPSVLLAVFGLLLTAVLVL KNVRGAILIGITVTTLAGIPIGVVDLSAVNFADNHISSAFAELGTTFLAAFGGMASLF SDSSRLPLVLMTIFAFSLSDTFDTIGTFVGTGRRTGIFSEEDERALENSSGFSSKMDR ALFADAIGTSIGALFGTSNTTTYVESAAGIAEGGRTGLTAVSTAVCFVLSVLLLPIVG IVPAAATAPALIIVGVMMVSSFLDVDWSDFDVALPSFFAAFFMALCYSISYGVAGSFI FYCLVKLVKGKTKEIHPILWGATFLFVLNFIILALL" sig_peptide 482464..482634 /locus_tag="SEQ_0497" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0497 by SignalP 2.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.654 between residues 57 and 58" misc_feature 482506..483804 /locus_tag="SEQ_0497" /inference="protein motif:PFAM:PF00860" /note="HMMPfam hit to PF00860, Permease family, score 3.8e-09" misc_feature join(482521..482589,482608..482676,482734..482802, 482836..482904,483049..483117,483136..483204, 483232..483291,483598..483702,483760..483828, 483865..483918) /locus_tag="SEQ_0497" /inference="protein motif:TMHMM 2.0" /note="10 transmembrane helices predicted for SEQ0497 by TMHMM2.0 at aa 20-42, 49-71, 91-113, 125-147, 196-218, 225-247, 257-276, 379-413, 433-455 and 468-485" gene 484290..484733 /locus_tag="SEQ_0498" /db_xref="GeneID:7696712" CDS 484290..484733 /locus_tag="SEQ_0498" /codon_start=1 /transl_table=11 /product="P-loop hydrolase" /protein_id="YP_002745875.1" /db_xref="GI:225869928" /db_xref="GeneID:7696712" /translation="MFYSKNENELIAYGQGIGRQLKAGDVLVLTGDLGAGKTTLTKGV AKGLGIDQMIKSPTYTIAREYEGRLPLYHLDVYRIGDDPDSIDLDDFIFGGGVTVIEW GELLAKGTLHDYLEILITKTETGRQVDYLAHGHRSEALLEELKHV" misc_feature 484317..484673 /locus_tag="SEQ_0498" /inference="protein motif:PFAM:PF02367" /note="HMMPfam hit to PF02367, Uncharacterised P-loop hydrolase UPF0079, score 5.1e-39" misc_feature 484380..484403 /locus_tag="SEQ_0498" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 484726..485253 /locus_tag="SEQ_0499" /db_xref="GeneID:7696713" CDS 484726..485253 /locus_tag="SEQ_0499" /codon_start=1 /transl_table=11 /product="acetyltransferase (GNAT) family protein" /protein_id="YP_002745876.1" /db_xref="GI:225869929" /db_xref="GeneID:7696713" /translation="MSEQVVTIEEAKASDASALITLIKEAADETDFITGTEDVIAATV EVLECFLEASQESLTDICLLLKVGDILAGLLNIAGKAYRETSYVGDCFMLVLKPYRNH GLGQLLMETTLDWARETKQLCALELEVQARNTCAYHIYEKYGFKIEGVKRKDVKSRNG DYQDVYLMRKYLERE" misc_feature 484912..485163 /locus_tag="SEQ_0499" /inference="protein motif:PFAM:PF00583" /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.9e-11" gene 485254..486516 /locus_tag="SEQ_0500" /db_xref="GeneID:7696714" CDS 485254..486516 /locus_tag="SEQ_0500" /codon_start=1 /transl_table=11 /product="LytR family regulatory protein" /protein_id="YP_002745877.1" /db_xref="GI:225869930" /db_xref="GeneID:7696714" /translation="MKIGKKIFLMLTAIVLLTLGAMGVYLTNAYTFSTGELSKTFKDF ATSSKKSDAIQQTEPFSILLMGVDTGSSHRTSTWQGNSDSMILVTINPKTKKTTMTSL ERDILITLSGPNDNEMNGAEAKLNAAYAAGGAQMAIMTVQDLLNITIDKYVQINMQGL IDLVNAVGGITVTNEFDFPISIADNEPEYQATVAPGTHKINGEQALVYARMRYDDPEG DYGRQKRQREVIQKVLKKILALNSISSYRKILSAVSGNMQTNIEISSRTIPNLLGYTD ALKNIKTYQLKGEGATLSDGGSYQIVTSDHLLEIQNRIRAELGLEKLSQLKTTATVYE NLYGSLKTQSTQDSSYYYNSGSLPAYTDSSTQYSTYSSETSSSSSYQDTTAGTQESGA ANVTPSPQADSPAEQQSSGATTGTPAAP" sig_peptide 485254..485346 /locus_tag="SEQ_0500" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0500 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.693 between residues 31 and 32" misc_feature 485272..485340 /locus_tag="SEQ_0500" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0500 by TMHMM2.0 at aa 7-29" misc_feature 485494..485970 /locus_tag="SEQ_0500" /inference="protein motif:PFAM:PF03816" /note="HMMPfam hit to PF03816, Cell envelope-related transcriptional a, score 5.6e-79" gene complement(486686..486982) /locus_tag="SEQ_0501" /db_xref="GeneID:7696715" CDS complement(486686..486982) /locus_tag="SEQ_0501" /note="Possible gene remnant. Similar to the N-terminal region of Streptococcus pyogenes serotype M18 hypothetical protein Spym18_1739. UniProt:Q8NZU2 (EMBL:AE010084 (118 aa) fasta scores: E()=2.9e-15, 51.546% id in 97 aa" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745878.1" /db_xref="GI:225869931" /db_xref="GeneID:7696715" /translation="MTLKTMTTIGLTSVLAYQVYRKRHQIKETLVAMQTSKKAIQADV DRIKANLAIIQKEARTLQAAGTELAYKWQAFNQEAQAHLTEIQQRMSKYQQETP" gene complement(486979..487398) /locus_tag="SEQ_0502" /db_xref="GeneID:7696716" CDS complement(486979..487398) /locus_tag="SEQ_0502" /codon_start=1 /transl_table=11 /product="HIT-family protein" /protein_id="YP_002745879.1" /db_xref="GI:225869932" /db_xref="GeneID:7696716" /translation="MENCIFCSIISGEIPSSKVYEDEQVLAFLDISQTTAGHTLLIPK KHVRNILAMDAETASQTFERLPKIARAIQKATGATAMNIINNNEELAGQTVFHAHVHL VPRYSQEDGIAIQYTTHEPDFPALAALAQQISQEISQ" misc_feature complement(487075..487389) /locus_tag="SEQ_0502" /inference="protein motif:PFAM:PF01230" /note="HMMPfam hit to PF01230, HIT domain, score 1.7e-38" gene complement(487851..488294) /locus_tag="SEQ_0504" /db_xref="GeneID:7696717" CDS complement(487851..488294) /locus_tag="SEQ_0504" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745880.1" /db_xref="GI:225869933" /db_xref="GeneID:7696717" /translation="MNLSRFLTFGLVSLSALSISGLVQTEAKANEWQTIFEKPQEVVI TDGWQTISEKPQEVSTANEWQVSSEEAQESVPDKFSQNEDPSLWAVPDKFSQNEDPSL WAVPDKFSQNEDPSLWAVPDKFSQNEDPSLWAVPDKFSQNEDPSL" sig_peptide complement(487851..487937) /locus_tag="SEQ_0504" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0504 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.476 between residues 29 and 30" gene 488831..489556 /locus_tag="SEQ_0506" /db_xref="GeneID:7696718" CDS 488831..489556 /locus_tag="SEQ_0506" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_002745881.1" /db_xref="GI:225869934" /db_xref="GeneID:7696718" /translation="MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTI NEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIPETPSLYEELTLAEHINTVAMAY DIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLAD LQAVFGDASASLNDIYLALTKEG" misc_feature 488909..489454 /locus_tag="SEQ_0506" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 2e-44" misc_feature 488930..488953 /locus_tag="SEQ_0506" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 489227..489271 /locus_tag="SEQ_0506" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." gene 489560..490594 /locus_tag="SEQ_0507" /db_xref="GeneID:7696719" CDS 489560..490594 /locus_tag="SEQ_0507" /codon_start=1 /transl_table=11 /product="ABC transporter protein EcsB" /protein_id="YP_002745882.1" /db_xref="GI:225869935" /db_xref="GeneID:7696719" /translation="MKALFRKRRQEFQHKHTKYLPYVFNDHFVLVLLFLLGFILFQYS QLLKHFPANPLPIQLGLLIAVLFLLNLGSVATYLEKADQHFLLTKEAEVIAHIRSAER LSFILWSSLQTVLLLPLFPLFQRLGVSLLAFVLLLGVLVLAKRLLLKRKVASFLSSKG LDWEKAIAFEADRQQAILKFYALFTNVKGISTKVKERPYLNPILKLIKADSKKVWTNL YLRAFLRSSDYLGLWLRLLLLSCLSLAFISNPYLAVGLALVFHYLSLFQLLSLYHHYD YHYMSGLYPTKPQHKQRNLLSLLRQLSGLMLIVNLVLCRSWQNALVLIVAMGLLNLLY LPYKLKKMID" sig_peptide 489560..489715 /locus_tag="SEQ_0507" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0507 by SignalP 2.0 HMM (Signal peptide probability 0.681) with cleavage site probability 0.631 between residues 52 and 53" misc_feature 489560..490585 /locus_tag="SEQ_0507" /inference="protein motif:PFAM:PF05975" /note="HMMPfam hit to PF05975, Bacterial ABC transporter protein EcsB, score 5.2e-146" misc_feature join(489614..489682,489725..489793,489866..489925, 489935..490003,490244..490303,490316..490384, 490445..490498,490508..490564) /locus_tag="SEQ_0507" /inference="protein motif:TMHMM 2.0" /note="8 transmembrane helices predicted for SEQ0507 by TMHMM2.0 at aa 19-41, 56-78, 103-122, 126-148, 229-248, 253-275, 296-313 and 317-335" gene 490657..491448 /locus_tag="SEQ_0508" /db_xref="GeneID:7696720" CDS 490657..491448 /locus_tag="SEQ_0508" /codon_start=1 /transl_table=11 /product="phosphotransferase enzyme family protein" /protein_id="YP_002745883.1" /db_xref="GI:225869936" /db_xref="GeneID:7696720" /translation="MTTTEQDLVLTPLRGKSGKAYKGTYPNGESVFIKLNTTPILPAL AKEQIAPQLLWAKRMGNGDMMSAQEWLNGRTLTREDMNSKQIVHILLRLHKSKQLVNQ LLQLNYKIENPYDLLVDFEQNAPLQIQQNSYLQAIVKELKRSLPEFRSEVATIVHGDI KHSNWVITTSGMIFLVDWDCVRLTDRMYDVAYLLSHYIPRSRWADWLSYYGYKNNDKV MQKIIWYAQFSYLTQILRCFDKRDMEHVNQEIYALRKFREMFRKK" misc_feature 490681..491331 /locus_tag="SEQ_0508" /inference="protein motif:PFAM:PF01636" /note="HMMPfam hit to PF01636, Phosphotransferase enzyme family, score 3.1e-31" gene 491448..492083 /gene="trmB" /locus_tag="SEQ_0509" /db_xref="GeneID:7696721" CDS 491448..492083 /gene="trmB" /locus_tag="SEQ_0509" /EC_number="2.1.1.33" /codon_start=1 /transl_table=11 /product="tRNA (guanine-N(7)-)-methyltransferase" /protein_id="YP_002745884.1" /db_xref="GI:225869937" /db_xref="GeneID:7696721" /translation="MRVRKRKGAQEHLENNPHYVILEPEAAKGRWCEVFGNDHPIHIE VGSGKGAFITGMALKNPEINYIGIDIQLSVLSYALDKVLASQAPNVRLLRVDGSSLTN YFDAGEVDMMYLNFSDPWPKSRHEKRRLTYKSFLDTYKQILPENGEIHFKTDNRGLFE YSLASFSQYGMTLKQVWLDLHASDYQGNVMTEYEARFAKKGQIIYRLEATF" misc_feature 491529..492074 /gene="trmB" /locus_tag="SEQ_0509" /inference="protein motif:PFAM:PF02390" /note="HMMPfam hit to PF02390, methyltransferase, score 7.6e-57" gene 492143..492229 /gene="tRNA-Ser" /locus_tag="SEQ__t33" /db_xref="GeneID:7696722" tRNA 492143..492229 /gene="tRNA-Ser" /locus_tag="SEQ__t33" /product="tRNA-Ser" /note="tRNA Ser anticodon GGA, Cove score 57.61" /db_xref="GeneID:7696722" gene complement(492276..492365) /locus_tag="SEQ_0509a" /pseudo /db_xref="GeneID:7696365" misc_feature complement(492276..492365) /locus_tag="SEQ_0509a" /note="gene remnant. Similar to the C-terminal region of Streptococcus pyogenes serotype M1 phi5005.3 integrase UniProt:Q48X40 (EMBL:CP000017 (359 aa) fasta scores: E()=7.5e-08, 79.310% id in 29 aa" /pseudo gene 492423..492503 /locus_tag="SEQ_0509b" /pseudo /db_xref="GeneID:7696723" misc_feature 492423..492503 /locus_tag="SEQ_0509b" /note="gene remnant. Similar to an internal region of Streptococcus pyogenes serotype M6 transposase UniProt:Q5XBP0 (EMBL:CP000003 (74 aa) fasta scores: E()=3.8e-06, 73.077% id in 26 aa" /pseudo gene complement(492707..492853) /locus_tag="SEQ_0511" /pseudo /db_xref="GeneID:7696724" misc_feature complement(492707..492853) /locus_tag="SEQ_0511" /note="gene remnant. Similar to the C-terminal region of Lactobacillus plantarum integral membrane protein UniProt:Q88TN7 (EMBL:AL935260 (183 aa) fasta scores: E()=0.5, 42.222% id in 45 aa" /pseudo /db_xref="PSEUDO:CAW92738.1" misc_feature complement(492728..492796) /locus_tag="SEQ_0511" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0511 by TMHMM2.0 at aa 20-42" /pseudo gene 493461..493955 /locus_tag="SEQ_0514" /pseudo /db_xref="GeneID:7696725" misc_feature 493461..493955 /locus_tag="SEQ_0514" /note="gene remnant. CDS lacks appropriate translational start site" /pseudo misc_feature 493548..493940 /locus_tag="SEQ_0514" /inference="protein motif:PFAM:PF02576" /note="HMMPfam hit to PF02576, Uncharacterised BCR, YhbC family COG0779, score 3.9e-53" /pseudo gene 494065..495219 /gene="nusA" /locus_tag="SEQ_0515" /db_xref="GeneID:7696726" CDS 494065..495219 /gene="nusA" /locus_tag="SEQ_0515" /codon_start=1 /transl_table=11 /product="N utilization substance protein A" /protein_id="YP_002745885.1" /db_xref="GI:225869938" /db_xref="GeneID:7696726" /translation="MSKEMLEAFRILEEEKHIDKADIIEAVTESLKSAYKRRYGQAES CVIEFNDKTADFQVFTVREVVEEVFDSRLEISLNDALAISSAYELGDKIRFEESVSEF GRVAAQSAKQTIMERMRRQMREITFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQ LSHQDQIPGETFKSHDRIDVYVYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDG TVEIMSVSREAGDRTKVAVRSHNPNVDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGL EIPVEENIDVIQWVDDPAEFIYNAIAPAEVDMVLFDDDDLKRATVVVPDNKLSLAIGR RGQNVRLAAHLTGYRIDIKSASEYERLEAEKEAAMTEAVATEELLTNEEV" misc_feature 494074..494439 /gene="nusA" /locus_tag="SEQ_0515" /inference="protein motif:PFAM:PF08529" /note="HMMPfam hit to PF08529, NusA N-terminal domain, score 1.2e-56" misc_feature 494455..494655 /gene="nusA" /locus_tag="SEQ_0515" /inference="protein motif:PFAM:PF00575" /note="HMMPfam hit to PF00575, S1 RNA binding domain, score 0.0001" misc_feature 495016..495165 /gene="nusA" /locus_tag="SEQ_0515" /inference="protein motif:PFAM:PF00013" /note="HMMPfam hit to PF00013, KH domain, score 0.029" gene 495235..495531 /locus_tag="SEQ_0516" /db_xref="GeneID:7696727" CDS 495235..495531 /locus_tag="SEQ_0516" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745886.1" /db_xref="GI:225869939" /db_xref="GeneID:7696727" /translation="MPKVKKIPLRKSLVSGEIIDKRDLLRIVKNKEGQIFIDPTGKQN GRGAYIKLDNQEALMAKKKQVFNRSFSMEVPESFYDEVIAHVDHKVKRRELGLE" misc_feature 495253..495492 /locus_tag="SEQ_0516" /inference="protein motif:PFAM:PF04296" /note="HMMPfam hit to PF04296, Protein of unknown function (DUF448), score 1.6e-34" gene 495524..495826 /locus_tag="SEQ_0517" /db_xref="GeneID:7696728" CDS 495524..495826 /locus_tag="SEQ_0517" /codon_start=1 /transl_table=11 /product="ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein" /protein_id="YP_002745887.1" /db_xref="GI:225869940" /db_xref="GeneID:7696728" /translation="MNSLNRLSHLIGLAQRAKKVISGEELVIKAIRHQEVNLVFLAND AGPNITKKVTDKSNYYNVEVSTVFSALELSAALGKPRKVVAIADAGFSKKMRTLMK" misc_feature 495536..495811 /locus_tag="SEQ_0517" /inference="protein motif:PFAM:PF01248" /note="HMMPfam hit to PF01248, Ribosomal protein L7Ae/L30e/S12e/Gadd4, score 2.1e-21" gene 495846..498716 /gene="infB" /locus_tag="SEQ_0518" /db_xref="GeneID:7696729" CDS 495846..498716 /gene="infB" /locus_tag="SEQ_0518" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-2" /protein_id="YP_002745888.1" /db_xref="GI:225869941" /db_xref="GeneID:7696729" /translation="MSKKRLHEIAKEIGKSSKEVVERAKSLGLDVKSHASSVEEADAN KIASSFSAGVTKNVQAGSAKDKQVAEQKAKAAKATTPQPAASKAAEKPAAATQEASQP VAVKPKSRNFKAEREARAKEQVARRQAGQNRSNDRKSDYRQLGRSQGQQTERAGHKSQ NQQRDRRFDNRPSSGNNRNDGHRQAGNRDKNRSFNANSRQQDTGRQGQTQAGAPKIDF KARAAALKAEQNAEYARQRESRFREQEEAKRLEQQARQEAKAAALKAQTEDKKHREAS AKATESVASMAAASVAKPVDKRRKKQNRPDKGHDRDHGLEDGQKKNKKSWNSQNQVRN QKNSNWNNNKKNKKGKHHKNSNTAPKPVTERKFHELPKEFEYSEGMTVAEIAKRIKRE PAEIVKKLFMMGVMATQNQSLDGDTIELLMVDYGIEAKAKVEVDEADIERFFTDDSYL NPENIVERAPVVTIMGHVDHGKTTLLDTLRNSRVATGEAGGITQHIGAYQIEEAGKKI TFLDTPGHAAFTSMRARGASVTDITILIVAADDGVMPQTIEAINHSKAAGVPIIVAIN KIDKPGANPERVISELAEHGIISTAWGGECEFVEISAKFNKNIDELLETVLLVAEVEE LKADPTVRAIGTVIEARLDKGKGAVATLLVQQGTLHVQDPIVVGNTFGRVRAMTNDLG RRVKSAEPSTPVSITGLNETPMAGDHFAVYADEKAARAAGEERAKRALLKQRQNTQRV SLDNLFDTLKAGEIKTVNVIIKADVQGSVEALAASLLKIDVEGVRVNVVHSAVGAINE SDVTLAEASNAVIIGFNVRPTPQARQQADTDDVEIRLHSIIYKVIEEVEEAMKGKLDP EYQEKMLGEAIIRETFKVSKVGTIGGFMVVNGKVTRDSSVRVIRDSVVIFDGKLASLK HYKDDVKEIGNAQEGGLMIEGFNDIKVDDTIEAYVMEEITRK" misc_feature 495846..496004 /gene="infB" /locus_tag="SEQ_0518" /inference="protein motif:PFAM:PF04760" /note="HMMPfam hit to PF04760, Translation initiation factor IF-2, N-ter, score 2.5e-13" misc_feature 496974..497129 /gene="infB" /locus_tag="SEQ_0518" /inference="protein motif:PFAM:PF04760" /note="HMMPfam hit to PF04760, Translation initiation factor IF-2, N-ter, score 3.6e-22" misc_feature 497022..497051 /gene="infB" /locus_tag="SEQ_0518" /inference="protein motif:Prosite:PS00215" /note="PS00215 Mitochondrial energy transfer proteins signature." misc_feature 497214..497717 /gene="infB" /locus_tag="SEQ_0518" /inference="protein motif:PFAM:PF00009" /note="HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 9.9e-55" misc_feature 497223..497552 /gene="infB" /locus_tag="SEQ_0518" /inference="protein motif:PFAM:PF01926" /note="HMMPfam hit to PF01926, GTPase of unknown function, score 3.8e-08" misc_feature 497241..497264 /gene="infB" /locus_tag="SEQ_0518" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 497784..497975 /gene="infB" /locus_tag="SEQ_0518" /inference="protein motif:PFAM:PF03144" /note="HMMPfam hit to PF03144, Elongation factor Tu domain, score 6.1e-11" gene 498906..499256 /gene="rbfA" /locus_tag="SEQ_0519" /db_xref="GeneID:7696730" CDS 498906..499256 /gene="rbfA" /locus_tag="SEQ_0519" /codon_start=1 /transl_table=11 /product="ribosome-binding factor A" /protein_id="YP_002745889.1" /db_xref="GI:225869942" /db_xref="GeneID:7696730" /translation="MTNHRIDRVGMEIKREVNEILHKKVRDPRVQGVTITEVQMLGDL SVAKVYYTIMSDLASDNQKAEIGLKKATGTIKRELGKQLTMYKIPDLVFEKDNSIAYG NKIDQLLRELEKKQ" misc_feature 498918..499232 /gene="rbfA" /locus_tag="SEQ_0519" /inference="protein motif:PFAM:PF02033" /note="HMMPfam hit to PF02033, Ribosome-binding factor A, score 2.8e-27" gene complement(499328..500347) /locus_tag="SEQ_0520" /db_xref="GeneID:7696731" CDS complement(499328..500347) /locus_tag="SEQ_0520" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745890.1" /db_xref="GI:225869943" /db_xref="GeneID:7696731" /translation="MTYLKRQLILLALLLTAIGSQTIVQASTRSWKSWFIEQYFWLKR DKSYYAEQDENTFYNYVKSAGEKSNQGFNLTQNEVNGTLKTEYRDNMQVHSWNENSTN PSNQKVILYLHGGSYLNNPTSYHIDMLKTLSTSLDAKIVLPIYPKAPTYTYDVAMPRL VSLYQDILKSTNNNANNITIMGDSAGGGLALGLALALKNEDIKQPKDIILLSPWLDVT LSNPEIPNYEASDPILSAWGLRIVGDIWARRGENNTKHPYVSPIYGDTSNLAPITMFV GTHEIFYPDITKFDGMLKQKGHKHQLFVGEKMNHVYPIYPIEEAKTAQYQIIDTIKKE YEPQK" sig_peptide complement(499328..499405) /locus_tag="SEQ_0520" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0520 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 between residues 26 and 27" misc_feature complement(499406..500023) /locus_tag="SEQ_0520" /inference="protein motif:PFAM:PF07859" /note="HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 5e-29" gene 500595..501029 /locus_tag="SEQ_0521" /db_xref="GeneID:7696732" CDS 500595..501029 /locus_tag="SEQ_0521" /codon_start=1 /transl_table=11 /product="negative regulator of copper transport operon" /protein_id="YP_002745891.1" /db_xref="GI:225869944" /db_xref="GeneID:7696732" /translation="MDTISDAEWEVMRVVWANGSMKSSEIIAILHEKHHWSDSTVKTL IGRLVKKKALRADRQGRSYIYQSLLDQDRRQLAMLRERLDGMCQRHHSRLLLALLKDT PMTLEDIQAFQLLLEAKKVGAVSHVRCDCVPGQCHCQKKERI" misc_feature 500604..500948 /locus_tag="SEQ_0521" /inference="protein motif:PFAM:PF03965" /note="HMMPfam hit to PF03965, Penicillinase repressor, score 9.3e-45" gene 501026..503260 /locus_tag="SEQ_0522" /db_xref="GeneID:7696733" CDS 501026..503260 /locus_tag="SEQ_0522" /EC_number="3.6.3.4" /codon_start=1 /transl_table=11 /product="copper-transporting ATPase" /protein_id="YP_002745892.1" /db_xref="GI:225869945" /db_xref="GeneID:7696733" /translation="MIVKETYLLEGMHCTSCALAIEQAVKQLPGVEGAAVDVTTEKLS VSYSTDSLSSAELIQAVRKAGYRAELLDETNMRGQLERLEEQASNEWYRFLWSALFSL PLLYLAMGPMLGLVLPVALAPQSHAISYGLVQLLLTLPVLFLNRQYYENGFKALIKKR PNMDSLVTLATSFAFIYSSYSCFKIVAGAAQFAHQLYFESVVVILTLITLGSYLEGRT KGRASQAIQKLMSLRVTDVRVIREGALQLIPLEQVTNEDICFIQPGERVAVDGLIVEG QSTVDESMLTGESLPVDKVTGDSVFAGTINGQGALRVKPSRLGNDTLLSQIIELVEQA QQAKAPIAALADRVSGVFVPIVLSLSLLSFLFWLFVMRESFDFALTIAIAVLIIACPC ALGLATPTAIMVGSGRAAEQGILFKGGDILEKAYQVRTIVFDKTGTLTEGQAQLQRII PLAASEKQGLQEVASLEQYSQHPLGEALVRVAQEKGYDLLAVTDFQSLVGLGVTGVID QHRLAVGNSELMSQQGIAISAAQTYAEQAALKGQTVVYYAKDNQLCALLLIADRLKAD SKAAIRALQDLGLQTVMLTGDNALTAQAIANEVGIDQVFSQVLPAQKAQIIADLKASG QLVAMVGDGINDAPALTLADIGISIGSGTDIAIEAADVILMTSAVRDVVECLELSRQT IRVVKQNLFWAFSYNSLMIPVAMGILHVFGGPLLSPMLAGFAMSLSSISVVLNALRLR HKKW" misc_feature 501041..501235 /locus_tag="SEQ_0522" /inference="protein motif:PFAM:PF00403" /note="HMMPfam hit to PF00403, Heavy-metal-associated domain, score 1.7e-15" misc_feature 501050..501139 /locus_tag="SEQ_0522" /inference="protein motif:Prosite:PS01047" /note="PS01047 Heavy-metal-associated domain." misc_feature join(501308..501376,501404..501457,501518..501586, 501599..501667,502067..502135,502163..502231, 503090..503158,503168..503236) /locus_tag="SEQ_0522" /inference="protein motif:TMHMM 2.0" /note="8 transmembrane helices predicted for SEQ0522 by TMHMM2.0 at aa 95-117, 127-144, 165-187, 192-214, 348-370, 380-402, 689-711 and 715-737" misc_feature 501539..501571 /locus_tag="SEQ_0522" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 501632..502297 /locus_tag="SEQ_0522" /inference="protein motif:PFAM:PF00122" /note="HMMPfam hit to PF00122, E1-E2 ATPase, score 1.2e-94" misc_feature 502163..502195 /locus_tag="SEQ_0522" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 502307..502984 /locus_tag="SEQ_0522" /inference="protein motif:PFAM:PF00702" /note="HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 2.2e-35" misc_feature 502325..502345 /locus_tag="SEQ_0522" /inference="protein motif:Prosite:PS00154" /note="PS00154 E1-E2 ATPases phosphorylation site." gene 503704..503817 /locus_tag="SEQ_0523" /db_xref="GeneID:7696734" CDS 503704..503817 /locus_tag="SEQ_0523" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745893.1" /db_xref="GI:225869946" /db_xref="GeneID:7696734" /translation="MLFFLAQHETEKVSITSNQKEQLNHGQAKTACEEQAE" gene 504131..505081 /locus_tag="SEQ_0524" /db_xref="GeneID:7696735" CDS 504131..505081 /locus_tag="SEQ_0524" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745894.1" /db_xref="GI:225869947" /db_xref="GeneID:7696735" /translation="MNENTKRLTDPIVLEKSRAIEASPEHHQKLEQIKSEMSGNARKN NLGWLAMVIGAIILYGMVDRSLALFLIIFVGGLVWPRLKTFKTANELSYVDHFLLPVL QEALPDVKIDYYSGIELSLLKLATPSSRWYDSNCHIIFGDDMQTEFCNLYAYHEENED DNWHRVTDFNGQVLLAKYHTAIKGYIRIVPTQKGFLGREKVHSGYKAKLKGEVQLEME DIRFNETYNVYCTDELSARMLLNPYMLAVLDEWREEMPVAVYMNGDTVVVSFYSGQQL LKTPSSRGAIEKLSLSSEYENIQDKLVKMYRLLDTLNHQL" misc_feature 504263..504316 /locus_tag="SEQ_0524" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0524 by TMHMM2.0 at aa 45-62" gene 505100..505645 /locus_tag="SEQ_0525" /db_xref="GeneID:7696736" CDS 505100..505645 /locus_tag="SEQ_0525" /codon_start=1 /transl_table=11 /product="LemA family protein" /protein_id="YP_002745895.1" /db_xref="GI:225869948" /db_xref="GeneID:7696736" /translation="MTSSMLTLILCMTILWLIGVRNKLERYRIVIEESKRNVDIALEK RYDTISEMLKIAKSYAKHEEKVFTELVKLRQGLSLEETNDVMRTQEQALNEVFAVGEA YPEMRSSEQFLSLQNEIAKENAALAAAKRIVNSNISLFNQAVVAFPVSIVASLINIKQ MTFLDIDLDHKKSLDQLDYTI" misc_feature 505100..505636 /locus_tag="SEQ_0525" /inference="protein motif:PFAM:PF04011" /note="HMMPfam hit to PF04011, LemA family, score 1.2e-08" misc_feature join(505112..505159,505505..505573) /locus_tag="SEQ_0525" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0525 by TMHMM2.0 at aa 5-20 and 136-158" gene complement(506061..506843) /locus_tag="SEQ_0526" /db_xref="GeneID:7696737" CDS complement(506061..506843) /locus_tag="SEQ_0526" /codon_start=1 /transl_table=11 /product="lactose phosphotransferase system repressor" /protein_id="YP_002745896.1" /db_xref="GI:225869949" /db_xref="GeneID:7696737" /translation="MLKRERLLTIMEKVNANGFITVTDIMESLRVSDMTARRNLDELA RAGKLVRIRGGAQSISMPQKLERSNTEKLTVQIEAKKEIARYASQLINDGETIFIGPG TTLECLAEALINRHIRIITNSLPVFTILNKSKTVDLILIGGEYRAITGAFVGSLASQT ILSLKFAKAFISCNGIYKNDIATYSENEGVIQRLACDNAIEKYLLADNQKFNAYDFYS FYHLDNIDAIITDSKISDSVKERYRQFAKLLIARPADNQVSS" misc_feature complement(506151..506615) /locus_tag="SEQ_0526" /inference="protein motif:PFAM:PF00455" /note="HMMPfam hit to PF00455, Bacterial regulatory proteins, deoR family, score 5.3e-67" misc_feature complement(506658..506828) /locus_tag="SEQ_0526" /inference="protein motif:PFAM:PF08220" /note="HMMPfam hit to PF08220, DeoR-like helix-turn-helix domain, score 9.1e-15" misc_feature complement(506673..506828) /locus_tag="SEQ_0526" /inference="protein motif:PFAM:PF08279" /note="HMMPfam hit to PF08279, HTH domain, score 0.0011" gene 506979..507404 /locus_tag="SEQ_0527" /db_xref="GeneID:7696738" CDS 506979..507404 /locus_tag="SEQ_0527" /EC_number="5.3.1.26" /codon_start=1 /transl_table=11 /product="galactose-6-phosphate isomerase LacA subunit" /protein_id="YP_002745897.1" /db_xref="GI:225869950" /db_xref="GeneID:7696738" /translation="MTIILGADAHGNDLKEAIKGFLQQEGFDVTDVTAIADDFVDNTL AVARALKADEESLGIMIDAYGAGPFMVATKIKGMVAAEVSDERSAYMTRGHNNARMIT MGAEIVGQELAKNIAKGFVTGHYDGGRHQIRVDMLNKMA" misc_feature 507150..507392 /locus_tag="SEQ_0527" /inference="protein motif:PFAM:PF02502" /note="HMMPfam hit to PF02502, Ribose/Galactose Isomerase, score 9.3e-45" gene 507420..507935 /locus_tag="SEQ_0528" /db_xref="GeneID:7696739" CDS 507420..507935 /locus_tag="SEQ_0528" /EC_number="5.3.1.26" /codon_start=1 /transl_table=11 /product="galactose-6-phosphate isomerase LacB subunit" /protein_id="YP_002745898.1" /db_xref="GI:225869951" /db_xref="GeneID:7696739" /translation="MKIAIGCDHIVTDEKMAVSDFLKSKGYEVIDCGTYDHTRTHYPI FGKRVGEAVANGLADLGVCICGTGVGITNAVNKVPGIRSALVRDMTTALYAKEELNAN VIGFGGKITGELLMCDIIEAFIKADYKETEENKKLIAKIAHLESHNANQEDPDFFTEF LDKWDRGDYHD" misc_feature 507600..507845 /locus_tag="SEQ_0528" /inference="protein motif:PFAM:PF02502" /note="HMMPfam hit to PF02502, Ribose/Galactose Isomerase, score 3.3e-42" gene 507945..508877 /locus_tag="SEQ_0529" /db_xref="GeneID:7696740" CDS 507945..508877 /locus_tag="SEQ_0529" /codon_start=1 /transl_table=11 /product="tagatose-6-phosphate kinase" /protein_id="YP_002745899.1" /db_xref="GI:225869952" /db_xref="GeneID:7696740" /translation="MILTVTLNPSIDISYPLNRLTLDTVNRVDRTTKTAGGKGLNVTR VLAEAGQSVVATGFIGGKLGDFVIHQLQEQGISNQFFKIKGETRNCIAVLHEGMQTEI LEAGPYIDMDEAEGFLNHMSIIAKQFDVLTFSGSLPKGLAAHYYQDLITMARVYGSKV VLDCSGAPLKAVLAGKDKPTVIKPNLEELEDLIGQPVTLDEERLISLLSQPLFEGIEW IIVSLGAQGAFAKHHNRFYRVTIPKIEVVNPVGSGDATVAGIAWALAEGDDDETLLKK ANVLGMLNAQETRTGHVNMAHFDELFDRIQVEEV" misc_feature 507957..508835 /locus_tag="SEQ_0529" /inference="protein motif:PFAM:PF00294" /note="HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 2.1e-58" misc_feature 508050..508124 /locus_tag="SEQ_0529" /inference="protein motif:Prosite:PS00583" /note="PS00583 pfkB family of carbohydrate kinases signature 1." misc_feature 508686..508727 /locus_tag="SEQ_0529" /inference="protein motif:Prosite:PS00584" /note="PS00584 pfkB family of carbohydrate kinases signature 2." gene 508879..509148 /gene="lacD" /locus_tag="SEQ_0530" /pseudo /db_xref="GeneID:7696741" misc_feature 508879..509148 /gene="lacD" /locus_tag="SEQ_0530" /note="gene remnant. The CDS appears to be truncated at the C-terminus. Similar to the N-terminal region of Streptococcus pyogenes serotype M18 tagatose 1,6-diphosphate aldolase 1 LacD1 UniProt:P63704 (EMBL:AE010082 (325 aa) fasta scores: E()=2.2e-20, 77.528% id in 89 aa" /pseudo gene 509226..509633 /gene="lacG" /locus_tag="SEQ_0531" /pseudo /db_xref="GeneID:7696939" misc_feature 509226..509633 /gene="lacG" /locus_tag="SEQ_0531" /note="gene remnant. The CDS appears to be truncated at the N-terminus. Similar to C-terminus of Staphylococcus aureus (strain MSSA476) 6-phospho-beta-galactosidase LacG UniProt:Q6G7C5 (EMBL:BX571857 (470 aa) fasta scores: E()=5.7e-41, 80.597% id in 134 aa" /pseudo /db_xref="PSEUDO:CAW92769.1" misc_feature 509226..509624 /gene="lacG" /locus_tag="SEQ_0531" /inference="protein motif:PFAM:PF00232" /note="HMMPfam hit to PF00232, Glycosyl hydrolase family, score 3.8e-08" /pseudo gene 509844..510716 /locus_tag="SEQ_0532" /db_xref="GeneID:7696940" CDS 509844..510716 /locus_tag="SEQ_0532" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_002745900.1" /db_xref="GI:225869953" /db_xref="GeneID:7696940" /translation="MKKVMMSLLILATATLGACQASHQSDQPKQEQKEPQAKKGRLFL SNMNSAKSQQEVRAALSHQLKEANVNAFMAGVQEYNSLVGKTGLTGAFTYQKQPDYDV VAIDELWSQKQGNFIGTNCRINTFMLLKDSMTIAPTSSDDTLLFMDEDAITTSQLFTQ AETERFKQLFSRVKTEATKDIQVHAKHMQEHFSAVSFNGPAKMLAVVIHDQLDGDYLF IGHVGVLVEYKSKYLFVEKLSFQEPYQAILFDQKQDCYQYLYHKYKTYQTKTSAEPFL MENNKAVNLASYRS" sig_peptide 509844..509915 /locus_tag="SEQ_0532" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0532 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.660 between residues 24 and 25" misc_feature 509868..509900 /locus_tag="SEQ_0532" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 510877..511491 /locus_tag="SEQ_0533" /db_xref="GeneID:7696742" CDS 510877..511491 /locus_tag="SEQ_0533" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745901.1" /db_xref="GI:225869954" /db_xref="GeneID:7696742" /translation="MTIDMWELLSIIGTIAFALSGAIVAMEEEFDVLGIFILGFVTAF GGGAIRNTLIGLPIEALWGQRPEFACAFIAIILIMLFPKLVAKGWVRAAVLTDAIGLA AFSVQGALHAVRLAQPLSAVIVAAVLTGAGGGVVRDVLAGRKPTVLRSEIYAGWSIIA ALVLYFKLATSNVECYLLVVLLTVMRMIGNKRQWHLPKIKWKED" misc_feature join(510889..510957,510970..511038,511075..511134, 511144..511212,511231..511299,511357..511425) /locus_tag="SEQ_0533" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0533 by TMHMM2.0 at aa 5-27, 32-54, 67-86, 90-112, 119-141 and 161-183" misc_feature 510892..511149 /locus_tag="SEQ_0533" /inference="protein motif:PFAM:PF03458" /note="HMMPfam hit to PF03458, UPF0126 domain, score 1.7e-27" misc_feature 511153..511410 /locus_tag="SEQ_0533" /inference="protein motif:PFAM:PF03458" /note="HMMPfam hit to PF03458, UPF0126 domain, score 6.5e-33" gene 511496..512320 /locus_tag="SEQ_0534" /db_xref="GeneID:7696743" CDS 511496..512320 /locus_tag="SEQ_0534" /codon_start=1 /transl_table=11 /product="haloacid dehalogenase-like hydrolase" /protein_id="YP_002745902.1" /db_xref="GI:225869955" /db_xref="GeneID:7696743" /translation="MIQLIAIDLDGTLLDSKKHIPKENIKAIQAAAQEGIKVVLCTGR PQSGTRPYFEQLGLSDKEEYLILNNGCSTYRSPSWELLHYQSLTFSAIEHLYQLSQPF SDIYLTLTGERDYLVIDSKVPDMVQADGDLVFTKVKATNLSQLSNSSQIIFQAMYMGE KAALDTFEALVREKLSASFSVVRSQETILEVMPECVTKASALKELTADLKLRPDQVMA IGDAANDLEMLAYAGLGVAMGNADEAIKKVADKVSLSNDQAGVAHAINQFALTKGS" misc_feature 511496..512305 /locus_tag="SEQ_0534" /inference="protein motif:PFAM:PF05116" /note="HMMPfam hit to PF05116, Sucrose-6F-phosphate phosphohydrolase, score 0.00061" misc_feature 511499..512221 /locus_tag="SEQ_0534" /inference="protein motif:PFAM:PF00702" /note="HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 9.3e-08" misc_feature 511508..512290 /locus_tag="SEQ_0534" /inference="protein motif:PFAM:PF08282" /note="HMMPfam hit to PF08282, haloacid dehalogenase-like hydrolase, score 7.6e-78" misc_feature 512150..512218 /locus_tag="SEQ_0534" /inference="protein motif:Prosite:PS01229" /note="PS01229 Hypothetical cof family signature 2." gene complement(512731..513288) /locus_tag="SEQ_0535" /db_xref="GeneID:7696744" CDS complement(512731..513288) /locus_tag="SEQ_0535" /codon_start=1 /transl_table=11 /product="TetR family regulatory protein" /protein_id="YP_002745903.1" /db_xref="GI:225869956" /db_xref="GeneID:7696744" /translation="MAGKPISKQSLQNLAHCNQESRRLTREAIEIALLSLLEKKPLGH ITISELVARAGVSRNAFYRNYSSKEDILECLLTSVIRRIFRGLKAFDLKTQAYQAWLY LFTEAKKEATLLSIIFNHHLQQLLTQMVTKRLRAYQKWQEKKLSHYALLFWSNAIVSV LSNWISDDMVVPAEEMAAMGLPLLA" misc_feature complement(513064..513204) /locus_tag="SEQ_0535" /inference="protein motif:PFAM:PF00440" /note="HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3.3e-06" misc_feature complement(513091..513156) /locus_tag="SEQ_0535" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1203.000, SD 3.28 at aa 45-66, sequence ITISELVARAGVSRNAFYRNYS" gene 513420..514262 /locus_tag="SEQ_0536" /db_xref="GeneID:7696745" CDS 513420..514262 /locus_tag="SEQ_0536" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745904.1" /db_xref="GI:225869957" /db_xref="GeneID:7696745" /translation="MTWKIVSDSGCDIRALKSQSNHLRFERVPLTLQIGSDIFRDDDG LDIDQMMETMYQSSKPATSSCPSPDAFLQAYRGADNVIAITITGTLSGSHNSARLAQN DLLEENPNANIHVIDSLSAGGEMDLIVLELERLINQGLSFDEVVEKITAYQEKTRLVF VLAKVDNLVKNGRLNKLIGKVIGLLNIRMVGQASKEGTLELLQKARGQKKAVSAVLEE IQKAGYKGGRVFISHAKNPKICEQIAEKIRAIYPEAEIQTSPASGLCSFYAEAEGLLM GYEV" misc_feature 513624..514256 /locus_tag="SEQ_0536" /inference="protein motif:PFAM:PF02645" /note="HMMPfam hit to PF02645, Uncharacterized protein, DegV family COG1307, score 3.9e-67" gene complement(514868..515614) /locus_tag="SEQ_0537" /db_xref="GeneID:7696746" CDS complement(514868..515614) /locus_tag="SEQ_0537" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_002745905.1" /db_xref="GI:225869958" /db_xref="GeneID:7696746" /translation="MRKPTKETHYLIISLLTIAIAGGAYLIFSSLSPKPATITTQSKG YELLTKAQALVKEAEDNPTKEAIAKAQKAINQLKKTQSKEELQARLTAISLKHNQEDV AIKVLKAAEDNPSPELKEAAQKAISKLSDEAKKAALQARLDAIGLSKPSTAQPETATP AAEKNIAPAPAAPQIKHTTPSSGGTTPAPNPKPSPKPNPQPSPSPAPENPEPTPSPNP QPNPQPETNTPSPQPPATEQSENTAPAGQN" sig_peptide complement(514868..514993) /locus_tag="SEQ_0537" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0537 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.489 between residues 42 and 43" misc_feature complement(515522..515590) /locus_tag="SEQ_0537" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0537 by TMHMM2.0 at aa 9-31" gene 515827..517446 /locus_tag="SEQ_0538" /db_xref="GeneID:7696747" CDS 515827..517446 /locus_tag="SEQ_0538" /codon_start=1 /transl_table=11 /product="Na+/Pi-cotransporter protein" /protein_id="YP_002745906.1" /db_xref="GI:225869959" /db_xref="GeneID:7696747" /translation="MRFIFWGAVQGLGLFLFSIKYMGDDLQQAAGDKLRYYIDKYTSN PFFGILVGIAMSALIQSSSGVTVITVGLVSAGLLTLQQAIGIVMGANIGTTVTSFLIG FKLGDYALPMIFIGAACLFFTSNKKLNNLGRIIFGVGGIFFSLNLMGDAMDPLKSVSA FQHYLATLGDKPFQGVFIGTALTMLIQSSAAIIGILQGLFSGGLLTLQGAIPILLGSN IGTCITAVLAAIGSNIAAKRVAAAHILFNVIGTVIFMILLMPFTSFMLWLQSVLALSP EMTIAFSHGTFNITNTLLLLPFINTLAKLVTTLIPGEDEIVKYEALYLDRLLITQAPS IALGNAHKELVHLASYAIQAFEASYSYIMTAEDKFGEKVRRYEKAVNTIDEELTTYLV DISNEALSPSENEVLAGLLDSSRDLERIGDHSESLATLIEGITAKQIGFSAAARGELT EMYHLTHCLTLDAIRAIVDSDKALAQSIVERHRTIEQKERQLRKTHIERLNRGECTAQ AGINFIDIISHYTRITDHALNLAEKVLSGQL" misc_feature join(515836..515889,515947..516006,516019..516087, 516121..516189,516217..516270,516343..516411, 516454..516522,516559..516627) /locus_tag="SEQ_0538" /inference="protein motif:TMHMM 2.0" /note="8 transmembrane helices predicted for SEQ0538 by TMHMM2.0 at aa 4-21, 41-60, 65-87, 99-121, 131-148, 173-195, 210-232 and 245-267" misc_feature 515866..516339 /locus_tag="SEQ_0538" /inference="protein motif:PFAM:PF02690" /note="HMMPfam hit to PF02690, Na+/Pi-cotransporter, score 1.1e-74" misc_feature 516151..516183 /locus_tag="SEQ_0538" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 517563..518711 /locus_tag="SEQ_0539" /db_xref="GeneID:7696748" CDS 517563..518711 /locus_tag="SEQ_0539" /codon_start=1 /transl_table=11 /product="N-acetylglucosamine-6-phosphate deacetylase" /protein_id="YP_002745907.1" /db_xref="GI:225869960" /db_xref="GeneID:7696748" /translation="MTSYIKADCFYYPNEVKPAGYLELNNGTFGYWTATVDDQAEVID YTGYQIAPGLVDTHIHGYAGADVMDNSAEGLHAISEGLLSTGVTSFLPTTLTSTFEHL EQVSATVASVADQVKGAKIQGIYFEGPYFTEEYKGAQNPIYMKNPRLDEFAAWQKAAK GLIKKIALAPERDGVEAFVSEVTKQGVTVALGHSNGTYTEAKKAVAAGASVWVHAYNG MRGLTHREPGMVGAVYNIPGTVAELICDGHHVSPVACDILMQQKGHEHVALITDCMRA GGSPDGDYMLGEFPVIVENGTARLKDSGNLAGSILKLKDGIKNVVAWGIASPAEAIHM SSYVPAASVGIEDVCGQIKAGHAADFIVLDKDLELVATYLNGQKAFEA" misc_feature 517707..518654 /locus_tag="SEQ_0539" /inference="protein motif:PFAM:PF01979" /note="HMMPfam hit to PF01979, Amidohydrolase family, score 9e-06" gene 518798..519637 /locus_tag="SEQ_0540" /db_xref="GeneID:7696749" CDS 518798..519637 /locus_tag="SEQ_0540" /codon_start=1 /transl_table=11 /product="aldo/keto reductase family protein" /protein_id="YP_002745908.1" /db_xref="GI:225869961" /db_xref="GeneID:7696749" /translation="MIKTVTMANGLAIPVLGFGTFKAADGEEAYQSTLAAIKAGYRHI DTAAIYHNEKSVGQAIRDSGVPREELFITTKLWNDAHSYDGAKAALAASLERLGLEYV DLYLIHWPNPKALRDCWQAANAAAWSYMEEAVEAGLVRSIGVSNFMVHHLEALKQTAT ITPAVNQIRLAPGCYQKETVDYCRRHHILLEAWGPLGQGEIFADDTMQALAKKYNKTV AQLALAWSIAEGFIPLPKSVHKERIVENMAIFDCEISPEDSERIRCLPGMSAIPDPDT KDF" sig_peptide 518798..518866 /locus_tag="SEQ_0540" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0540 by SignalP 2.0 HMM (Signal peptide probability 0.851) with cleavage site probability 0.799 between residues 23 and 24" misc_feature 518816..519598 /locus_tag="SEQ_0540" /inference="protein motif:PFAM:PF00248" /note="HMMPfam hit to PF00248, Aldo/keto reductase family, score 7.6e-109" misc_feature 518915..518968 /locus_tag="SEQ_0540" /inference="protein motif:Prosite:PS00798" /note="PS00798 Aldo/keto reductase family signature 1." misc_feature 519185..519238 /locus_tag="SEQ_0540" /inference="protein motif:Prosite:PS00062" /note="PS00062 Aldo/keto reductase family signature 2." misc_feature 519497..519544 /locus_tag="SEQ_0540" /inference="protein motif:Prosite:PS00063" /note="PS00063 Aldo/keto reductase family active site signature." gene 519670..519891 /locus_tag="SEQ_0541" /pseudo /db_xref="GeneID:7696750" misc_feature 519670..519891 /locus_tag="SEQ_0541" /note="gene remnant. Similar to an internal region of Lactobacillus salivarius subsp. salivarius (strain ucc118) ABC transporter, ATP-binding protein UniProt:Q1WV92 (EMBL:CP000233 (661 aa) fasta scores: E()=0.0006, 48.485% id in 66 aa" /pseudo /db_xref="PSEUDO:CAW92786.1" gene 520158..520691 /locus_tag="SEQ_0542" /db_xref="GeneID:7696751" CDS 520158..520691 /locus_tag="SEQ_0542" /codon_start=1 /transl_table=11 /product="isoprenylcysteine carboxyl methyltransferase (ICMT) family protein" /protein_id="YP_002745909.1" /db_xref="GI:225869962" /db_xref="GeneID:7696751" /translation="MIILLLMLLMFAIRLVFLKKSIKNEKAILANGGKEFGAQNTKFL TLLHIMIYVFAVTEALLKQIKFDGISFLGLLLMIFSIAVLYEVTRILGDIWTVKLMLA KDHKYVDHWLFKTVKHPNYFLNIAPELVGIALLCHAQITAMLLFPCYIIVIYLRIREE NRLLSEVIIPNGTRPKS" misc_feature join(520287..520340,520359..520427,520548..520616) /locus_tag="SEQ_0542" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0542 by TMHMM2.0 at aa 35-52, 59-81 and 122-144" misc_feature 520368..520655 /locus_tag="SEQ_0542" /inference="protein motif:PFAM:PF04140" /note="HMMPfam hit to PF04140, Isoprenylcysteine carboxyl methyltransferase, score 3.1e-47" gene 521057..521968 /gene="glyQ" /locus_tag="SEQ_0543" /db_xref="GeneID:7696752" CDS 521057..521968 /gene="glyQ" /locus_tag="SEQ_0543" /EC_number="6.1.1.14" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase alpha chain" /protein_id="YP_002745910.1" /db_xref="GI:225869963" /db_xref="GeneID:7696752" /translation="MSNKLTFQEIILTLQQYWNDQGCMLMQAYDNEKGAGTMSPYTFL RAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLQSLER LGIDPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATSPVTAE VTYGLERLASYIQEVDSVYDIEWAPGVKYGEIFLQPEYEHSKYSFEVSNQDMLLENFE IFEKEAERALAQGLVHPAYDYVLKCSHTFNLLDARGAVSVTERAGYIARIRHLARSVA KTFVAERKKLGFPLLDDASRVALLAED" misc_feature 521075..521926 /gene="glyQ" /locus_tag="SEQ_0543" /inference="protein motif:PFAM:PF02091" /note="HMMPfam hit to PF02091, Glycyl-tRNA synthetase alpha subunit, score 2.8e-219" misc_feature 521540..521569 /gene="glyQ" /locus_tag="SEQ_0543" /inference="protein motif:Prosite:PS00339" /note="PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2." gene 522334..524373 /gene="glyS" /locus_tag="SEQ_0544" /db_xref="GeneID:7696753" CDS 522334..524373 /gene="glyS" /locus_tag="SEQ_0544" /EC_number="6.1.1.14" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase beta chain" /protein_id="YP_002745911.1" /db_xref="GI:225869964" /db_xref="GeneID:7696753" /translation="MTKDLLVELGLEELPAYVVTPSEKQLVERMADFLKANRLSYDAI EGFSTPRRLAVRVLGLADQQTDLTEDFKGPSKKIALDADGQFSKAAQGFVRGKGLTVD DIEFREVKGEEYVYVTKHEAGKQAKDVLAAVPEVLASLTFPVSMHWANNSFDYIRPVH SLIVLLDDEPLELDFLDIHSGRISRGHRFLGEETSITSADSYEADLRSQFVIASAKER QEMIIAQIRAIEAEQKVQVDIDEDLLNEVLNLVEYPTAFMGSFDPKYLEIPEEVLVTS MKNHQRYFVVRDQAGKLMPNFISVRNGNAKHLQNVIKGNEKVLVARLEDGEFFWREDQ KLSIEDLVAKLAHVTFHEKIGSVAEHMERTKVIAAFLADQAGLSEAEKSAVARAAQIY KFDLLTGMVGEFDELQGIMGEKYALLTGEAAAVATAIREHYLPNSAEGELPETKVGAV LALADKLDTLLSFFSVGLIPSGSNDPYALRRATQGIVRILEHFGWSIPMDKLIDSLYE LSFDSLTYQHKAEVLDFICARVDKMMGSAIPKDIREAVLASSSFVVPELLARAEALAA ASQLDTYKPAVESLSRVFNLAKKAVDAVLIDASLFENDYERALAQAVDSLVLSGSAKE QLAQVFALSPVIDDFFDHTMVMTEDEAIRRNRLALLAELVKKVETIAAFDRLNTK" misc_feature 522346..523992 /gene="glyS" /locus_tag="SEQ_0544" /inference="protein motif:PFAM:PF02092" /note="HMMPfam hit to PF02092, Glycyl-tRNA synthetase beta subunit, score 5.2e-226" misc_feature 524059..524322 /gene="glyS" /locus_tag="SEQ_0544" /inference="protein motif:PFAM:PF05746" /note="HMMPfam hit to PF05746, DALR anticodon binding domain, score 0.00022" gene 524910..525167 /locus_tag="SEQ_0545" /db_xref="GeneID:7696754" CDS 524910..525167 /locus_tag="SEQ_0545" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745912.1" /db_xref="GI:225869965" /db_xref="GeneID:7696754" /translation="MDPKKIARINELAKKKKTVGLTGPEKVEQAKLREEYIEGYRRSV RHHIEGIKIVDEDGNDVTPEKLRQVQREKGLHGRSLDDPES" misc_feature 524916..525110 /locus_tag="SEQ_0545" /inference="protein motif:PFAM:PF05979" /note="HMMPfam hit to PF05979, Bacterial protein of unknown function (DUF89, score 2.9e-42" gene 525696..525860 /locus_tag="SEQ_0546" /db_xref="GeneID:7696755" CDS 525696..525860 /locus_tag="SEQ_0546" /codon_start=1 /transl_table=11 /product="Streptolysin S precursor" /protein_id="YP_002745913.1" /db_xref="GI:225869966" /db_xref="GeneID:7696755" /translation="MLQFASNILATSVAETTQVAPGGCCCCCSCCCCVSASWGNTTIN NNYGAAEPKA" gene 526088..527038 /locus_tag="SEQ_0547" /db_xref="GeneID:7696756" CDS 526088..527038 /locus_tag="SEQ_0547" /codon_start=1 /transl_table=11 /product="Streptolysin S biosynthesis protein" /protein_id="YP_002745914.1" /db_xref="GI:225869967" /db_xref="GeneID:7696756" /translation="MPFFSKEKQRSDNQSDLTREEARQLFEFNTNHLSLSTYHHQTVL KTSKQLVAQHLMPDETDNLSQRFLMNYKANNNYLGFKTSVAEFFTDSAVTTFSNSDYF EDRANTIALPKAKKVSAALSTCITNRRSHRQFIDEEMPLQDLADLLYYACGVSSQAII KEGMTKTVALRNCASGGGLYPITLFFYARNVETLKDGFYEYLPYQHALRCHHLSDQED IRAFAEYGPITAENCNVILIYVYQYIKNTRKYGNQATAYAFIEAGEIAQNVQLVSTAL VYGSVDIGGYNKEYLQEKLGLDGLTQHVIHMTIIGNKESQ" gene 527035..528099 /locus_tag="SEQ_0548" /db_xref="GeneID:7696757" CDS 527035..528099 /locus_tag="SEQ_0548" /codon_start=1 /transl_table=11 /product="Streptolysin S biosynthesis protein" /protein_id="YP_002745915.1" /db_xref="GI:225869968" /db_xref="GeneID:7696757" /translation="MKYQLNSNVRIVQFDDTFCFRKGLWDFNEAVLDIAQEPQALKEA YYSIISDWFNGKVIDTDTYEKTLESDLFAKLSEVITALYYNDLLMLEDAYALEENIMK VLTGNYHFIAESGQAKDTAPVLFISDSSYVNESAELLAKHLNLNLQVASDELKMLIQE TDVTSRLDALEHHRNMKCLSEKLADYQSIVICQGRLNIMMLRHLNEISVALKKQLVLG FVDGPFIHACTLNPPHSADFDSLERRVLARLQDHTLYQRFASQQLPPTQPVSSSYVPL LNVLMNLVVSEAFIIAQTGSSKFEGRLLSVYLPTLEIQVQDILKMSNSQTQGALTKLR YEDQQISTREIVKKLLQEES" gene 528112..529470 /locus_tag="SEQ_0549" /db_xref="GeneID:7696758" CDS 528112..529470 /locus_tag="SEQ_0549" /codon_start=1 /transl_table=11 /product="Streptolysin S biosynthesis protein" /protein_id="YP_002745916.1" /db_xref="GI:225869969" /db_xref="GeneID:7696758" /translation="MLHYYPSFNHILDKLKGLSGNRTGILNQSQVPICNHPHDVYLKS VTGQMPDYHKQFIGELSQVSYHIIGYGSHYEEALIKYLGESIERYATVIAGELLSDRI VYASYKELSQTDPVMPLEYLQVFTQEQIDRCHDLHMIMCDKMVTQDDVLGWVKCPMFF EDKEMYVPAQMLCVGYKTNQAVGEKHIIPGFSTGTASHTTLEAAMCNSLIEYIQIDSM MLSWHTKKPCPRVIIDDPEILALLEEARLGKDSLYEIIPIDMTVGEDNPLYTFGIILK NKSNEGPYLLFGVQAGLDPKHTLLRGIMEASAISYSYYYNLFYNPTSTQNAESDSPLF LDLDSNVFYYAHPKDQELKWKAFEPLISGEVRLSDLTNHAGKDKKEDLKTLLAYTKKV SPNAVFLDITPPEASEKGWYVTRVLTPELLEMCIPAFPFANHPRMRQFGGVTNAFVHP MP" misc_feature 528271..529380 /locus_tag="SEQ_0549" /inference="protein motif:PFAM:PF02624" /note="HMMPfam hit to PF02624, YcaO-like family, score 1.2e-07" gene 529445..530116 /locus_tag="SEQ_0550" /db_xref="GeneID:7696759" CDS 529445..530116 /locus_tag="SEQ_0550" /codon_start=1 /transl_table=11 /product="CAAX amino terminal protease family protein" /protein_id="YP_002745917.1" /db_xref="GI:225869970" /db_xref="GeneID:7696759" /translation="MPLYTQCLNLCFLMATFCPSIAMQAIFGQGRDSYSFNLIGFLRA VLVYYALVLTGIYLLSPPIKAPLGHSDGRLLIIGFILSFVVLFVEVAFLHLSRCWQKK EWLPLVLSFVGTTQKWPQIGYPLVLACCEEITYRLIWFNILWLQWRLPIALVLLITSL CYALNHFLMGRSIFYAKILTGLIYGSIYYVSQSLWLVLLVHVGGNLWVEGLSHLQSMH KKVVR" sig_peptide 529445..529528 /locus_tag="SEQ_0550" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0550 by SignalP 2.0 HMM (Signal peptide probability 0.830) with cleavage site probability 0.483 between residues 28 and 29" misc_feature join(529463..529531,529559..529627,529664..529732, 529883..529951,529988..530056) /locus_tag="SEQ_0550" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0550 by TMHMM2.0 at aa 7-29, 39-61, 74-96, 147-169 and 182-204" misc_feature 529799..530080 /locus_tag="SEQ_0550" /inference="protein motif:PFAM:PF02517" /note="HMMPfam hit to PF02517, CAAX amino terminal protease family, score 0.00021" misc_feature 529799..529831 /locus_tag="SEQ_0550" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 530113..530799 /locus_tag="SEQ_0551" /db_xref="GeneID:7696760" CDS 530113..530799 /locus_tag="SEQ_0551" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745918.1" /db_xref="GI:225869971" /db_xref="GeneID:7696760" /translation="MIIILALLSFLILVTLFLTSHKRRRLVRWHLRHIRAMSYQQWLD LLLGLIQLGLVLVCLLFSDALALDGLLTFLGRVSFGWEIICYVLLYSIALVELTLLVL VLLFDLMLKKDSRLLLGKMTWLAFKPDRAAASFLLLSLVTLVDAFCYLGLCLFLGKDS VAGLTLVVLGYALVKACRYSGWLQQLLALCLFSVIGVWCVTAALLYGWLIGSLLLTLT YLLISFKEQR" misc_feature join(530122..530175,530236..530304,530362..530430, 530512..530580,530590..530658,530677..530745) /locus_tag="SEQ_0551" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0551 by TMHMM2.0 at aa 4-21, 42-64, 84-106, 134-156, 160-182 and 189-211" gene 530822..531745 /locus_tag="SEQ_0552" /db_xref="GeneID:7696761" CDS 530822..531745 /locus_tag="SEQ_0552" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_002745919.1" /db_xref="GI:225869972" /db_xref="GeneID:7696761" /translation="MSFVELKDVVKVYRGGKKAIDHVSLTIEEGRIYGLLGPNGAGKS TLINAILGLIPLNAGEVTVLQQSYKSIRKISSKIGYVPQDIAVYPDLTAYENVELFGS LYGLKGSELKEQVLKSLEFVGLKSQASQFPSQFSGGMKRRLNIACALVHSPKLIIFDE PTVGIDPQSRNHILESIRLLNEQGATVIYTTHYMEEVEALCDYIYIMDHGQVIEEGSQ AELERRYESDFTKQIMVTVAADQAIDLSNKPNWRLMDNELEAVLLIEHEDIGSVVRQL TDAHIAFSEIRHKHLNLEEIFLHLTGKKLRD" misc_feature 530909..531451 /locus_tag="SEQ_0552" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 1.8e-66" misc_feature 530930..530953 /locus_tag="SEQ_0552" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 531224..531268 /locus_tag="SEQ_0552" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." gene 531754..532881 /locus_tag="SEQ_0553" /db_xref="GeneID:7696762" CDS 531754..532881 /locus_tag="SEQ_0553" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter protein" /protein_id="YP_002745920.1" /db_xref="GI:225869973" /db_xref="GeneID:7696762" /translation="MILFHLIKKESLQIFRDRTALLMMVVFPILMILILSFAFKSSFN TAATVPKLTVRYQLEGKETEYQKNFITFLKLLNKELHLEAKETKDIAKAKQKVSEGAL TAALEVKSDQNIEVTTNSINQQNADLINMLVNIYVDNAKTYDSIANLYPEAISNIKKR KIDYIASSSVQTSKGMSSADYYAISMFTMITFYSIMSAMNLVLSDRQQGVASRIYLTG VSNSAILLGKLIGGMLATAVQLTILYVFTRFVLRVNWGTNDWQIIGVTASLVYLSVAI GIGLATGIRNQSFLTVASNAVIPVFAFLGGSYIPLSTLNSALINQLSNISPIKWVNDS LFYLIFGGQSNPIPVTLMVNLGIGTAFILFALVRMRKQVAA" sig_peptide 531754..531891 /locus_tag="SEQ_0553" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0553 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.522 between residues 46 and 47" misc_feature join(531811..531870,532297..532365,532426..532494, 532537..532605,532618..532686,532786..532854) /locus_tag="SEQ_0553" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0553 by TMHMM2.0 at aa 20-39, 182-204, 225-247, 262-284, 289-311 and 345-367" misc_feature 532159..532773 /locus_tag="SEQ_0553" /inference="protein motif:PFAM:PF01061" /note="HMMPfam hit to PF01061, ABC-2 type transporter, score 8.8e-07" gene 532878..533996 /locus_tag="SEQ_0554" /db_xref="GeneID:7696763" CDS 532878..533996 /locus_tag="SEQ_0554" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter protein" /protein_id="YP_002745921.1" /db_xref="GI:225869974" /db_xref="GeneID:7696763" /translation="MIPFIKALFIKIRRKKTSYITFILLPMLTTMLALSLSFIGGSQA KIGILDKDKSQVSKQFVSQLKHNKKYQIYTRLEEKAIDQYLKAKTLEAVLTIEPGFGE KVLKGDTQKIALRSIADSQITEWFKAQANYLLENYNIIGDAAAGNQEVFKKISAHNTK LSYKVKEITLADRSQSKSVSSTTTGFLLILMLGSTSVLYGGILLDKSSQIYNRLVLSR LSSLQYMLSYVCVGIVAFAIQIVIMLGLLRVANVSFYIPTAIVLLTFFLYSLLAIGFG LMIGAVSKNAQQSSQLANLIVMPTSMLAGCLWPLSITPPYMQAIGKLLPQHWVLTIIS TFQNGGNLGEAWPYFLALFVAAMTLMVLASVLMKPLHR" sig_peptide 532878..533009 /locus_tag="SEQ_0554" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0554 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.969 between residues 44 and 45" misc_feature join(532935..533003,533421..533489,533550..533618, 533646..533714,533751..533819,533910..533978) /locus_tag="SEQ_0554" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0554 by TMHMM2.0 at aa 20-42, 182-204, 225-247, 257-279, 292-314 and 345-367" misc_feature 533322..533891 /locus_tag="SEQ_0554" /inference="protein motif:PFAM:PF01061" /note="HMMPfam hit to PF01061, ABC-2 type transporter, score 1.2e-13" misc_feature 533763..533795 /locus_tag="SEQ_0554" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene complement(534129..535364) /locus_tag="SEQ_0555" /db_xref="GeneID:7696764" CDS complement(534129..535364) /locus_tag="SEQ_0555" /codon_start=1 /transl_table=11 /product="collagen and fibronectin-binding cell surface-anchored protein FneE" /protein_id="YP_002745922.1" /db_xref="GI:225869975" /db_xref="GeneID:7696764" /translation="MRKTMKKMLAASTVCIIMSGSFIGGAARVLAEQYYGYDDGTKDG GDWPVFLYVTPTNHPERKTDKEHCVYCFNRLNSSPELWESQFKDPSKLGIKLPIYEKK EGDESLLRAKSQKPSDNLTSKLVTVLSNGYPNKTLGNLSEDQSRRLTQLAIWHFTDGY ATNHFKDGYHLNKDEDSELKKLIETAEKNFQTTAHTYSLNLYVTSSYNYSTGKFYQHL LGSTLTPKLPNPNPGPKPPGGNNPHHLPGENGQTKYPEGESGEAGAPKKPEPKPEPKP EPMPKPEPKPQPEPMPEPKPDPQPKPEPKPQPEPKPEPKPQPVPKPDPEPMPDPEPKP QPEPMPEPKPKPEPQPKPAPQPEVKPQKPTKPSNTTSQSSGKGLPRTNEAGSLMTGLG TGLLSLLGLGFLTRRKRKD" sig_peptide complement(534129..534221) /locus_tag="SEQ_0555" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0555 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.956 between residues 31 and 32" misc_feature complement(join(534153..534212,535272..535340)) /locus_tag="SEQ_0555" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0555 by TMHMM2.0 at aa 9-31 and 385-404" misc_feature complement(535014..535268) /locus_tag="SEQ_0555" /inference="protein motif:PFAM:PF08341" /note="HMMPfam hit to PF08341, Fibronectin-binding protein signal sequence, score 5.6e-09" gene complement(535678..536973) /locus_tag="SEQ_0556" /pseudo /db_xref="GeneID:7696765" misc_feature complement(535678..536973) /locus_tag="SEQ_0556" /note="gene remnant. CDS lacks an N-terminal signal sequence, therefore it will not be processed correctly. Similar to the C-terminal region of Streptococcus equi subsp. equi collagen-like protein G SclG UniProt:Q1I0L6 (EMBL:DQ158083 (397 aa) fasta scores: E()=4.6e-25, 36.929% id in 241 aa" /pseudo misc_feature complement(535702..535761) /locus_tag="SEQ_0556" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0556 by TMHMM2.0 at aa 395-414" /pseudo misc_feature complement(535957..536136) /locus_tag="SEQ_0556" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copies), score 1.6e-11" /pseudo misc_feature complement(536137..536316) /locus_tag="SEQ_0556" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copies), score 1.3e-12" /pseudo gene complement(537102..538187) /locus_tag="SEQ_0557" /db_xref="GeneID:7696766" CDS complement(537102..538187) /locus_tag="SEQ_0557" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_002745923.1" /db_xref="GI:225869976" /db_xref="GeneID:7696766" /translation="MTTRYFYKLLLTMLTLALGGFSLSACHSKISKPYQVAIFDKDHV RTFMEKADSLVPVETISRTQHKLFERESFKQAKQGYFAKTREGNDLKVLLTHIDQASL EEKVLHADGNDAYTSTTDGDYFYTTAVFADRIDCYKYDRHLKKQAHKSILNQDTINAS NQFLVIDDALYLLVSAVDIKSQQPKTELWKMDKSFTITDRIDLDESTAYLRMVNVGRT LYITQAADGILETGEPRPGNKVMTYDLDSGQKSYLMLHVNSPRAIYHHAKTNELIIEN DQHYNPDFAWTIYQLDTGEERTIRFEELAGQETSSPYFMMTSSNYYFLFPKRLYRYDC SNHQMTCINLDQYGVTHAHALIAKPTP" sig_peptide complement(537102..537197) /locus_tag="SEQ_0557" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0557 by SignalP 2.0 HMM (Signal peptide probability 0.833) with cleavage site probability 0.517 between residues 32 and 33" misc_feature complement(538110..538142) /locus_tag="SEQ_0557" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene complement(538646..539275) /locus_tag="SEQ_0558" /db_xref="GeneID:7696767" CDS complement(538646..539275) /locus_tag="SEQ_0558" /codon_start=1 /transl_table=11 /product="CutC family protein" /protein_id="YP_002745924.1" /db_xref="GI:225869977" /db_xref="GeneID:7696767" /translation="MIKEFCAENLTMLNQLTSQSVNRVELCDNLAVGGTTPSYGVIKE ACDLLHDKQISVATMIRPRGGDFVYNDLELRAMEADILKAIEAGTDALVIGLLTKDNQ LDTDAIEQLLPATQGLPLVFHMAFDLIARDQQIASLEQLIDYGFVRILLHGSSDTRSI YENIDHIKQLVKAAQHRIEIMIGGGVTADNCQELSQLTGTAIVHGTKII" misc_feature complement(538649..539275) /locus_tag="SEQ_0558" /inference="protein motif:PFAM:PF03932" /note="HMMPfam hit to PF03932, CutC family, score 2.5e-116" gene 539486..540040 /locus_tag="SEQ_0559" /db_xref="GeneID:7696768" CDS 539486..540040 /locus_tag="SEQ_0559" /codon_start=1 /transl_table=11 /product="acetyltransferase (GNAT) family protein" /protein_id="YP_002745925.1" /db_xref="GI:225869978" /db_xref="GeneID:7696768" /translation="MEIRLAFPNELSQIMTVINSAKSALAQSGSSQWQKADGYPAYQD IAADVLQGQGYVALLEGQIVAYAAVIDGQEDAYDKIYDGRWQHNHHRYVTFHRVAVLS DRTGQGIAQTFLQGLIEGQHGPDFRIDTHEHNQVMRHIIEKLGFVYCGKVPIDGERLA YQKIKKSHERAAYQEISEDSRYSY" misc_feature 539648..539926 /locus_tag="SEQ_0559" /inference="protein motif:PFAM:PF00583" /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.4e-05" gene 540497..541009 /locus_tag="SEQ_0560" /db_xref="GeneID:7696769" CDS 540497..541009 /locus_tag="SEQ_0560" /EC_number="2.1.1.63" /codon_start=1 /transl_table=11 /product="methylated-DNA--protein-cysteine methyltransferase" /protein_id="YP_002745926.1" /db_xref="GI:225869979" /db_xref="GeneID:7696769" /translation="MWGGQILPLYECVYQSPLGKISLVATDVALIGAWFEGQRYFQAG IKVQPIWQEQHALLKRACLWLDAYFERKPYPMLDCLSPQGTDFQRAVWRELQTIRWGE TLSYGELAKRLQCRSAQAVGGAIGRNPLSIFIPCHRVLAADGRLIGYAGGLEKKAWLL RHEQISVNKE" misc_feature 540746..541000 /locus_tag="SEQ_0560" /inference="protein motif:PFAM:PF01035" /note="HMMPfam hit to PF01035, 6-O-methylguanine DNA methyltransferase, score 2e-39" misc_feature 540896..540916 /locus_tag="SEQ_0560" /inference="protein motif:Prosite:PS00374" /note="PS00374 Methylated-DNA--protein-cysteine methyltransferase active site." gene 541013..541366 /locus_tag="SEQ_0561" /db_xref="GeneID:7696770" CDS 541013..541366 /locus_tag="SEQ_0561" /codon_start=1 /transl_table=11 /product="ArsC family protein" /protein_id="YP_002745927.1" /db_xref="GI:225869980" /db_xref="GeneID:7696770" /translation="MITIYQYPKCSTCQKALAELKTLVSEVDIIDIKANPPKAEQLKQ WLEHSDYSLKSFFNTSGMRYRELGLKDKVNSLSVEEAAELLATDGMLIKRPILLQDNQ VLQVGYRTAYKDLGL" misc_feature 541025..541351 /locus_tag="SEQ_0561" /inference="protein motif:PFAM:PF03960" /note="HMMPfam hit to PF03960, ArsC family, score 1.8e-29" gene complement(541442..542269) /locus_tag="SEQ_0562" /db_xref="GeneID:7696771" CDS complement(541442..542269) /locus_tag="SEQ_0562" /EC_number="3.1.11.2" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease" /protein_id="YP_002745928.1" /db_xref="GI:225869981" /db_xref="GeneID:7696771" /translation="MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQE TKLSAKGPTKKHLESLLGYFPNHLNVWRSSVEPARKGYAGTMFLYKKELNPIVTFPDI GAPTTMDAEGRIITLEFNDFFVTQVYTPNAGDGLRRLEERQLWDQKYADYLAQLDAQK PVLATGDYNVAHKEIDLANPASNHRSPGFTDEERLGFTNLLNRGFTDTFRFIHGDIPN VYSWWAQRSKTSKLNNTGWRIDYWLTSNRLIDKVSRSEMISSGERQDHTPILLEIDL" misc_feature complement(541535..541570) /locus_tag="SEQ_0562" /inference="protein motif:Prosite:PS00728" /note="PS00728 AP endonucleases family 1 signature 3." misc_feature complement(542132..542161) /locus_tag="SEQ_0562" /inference="protein motif:Prosite:PS00726" /note="PS00726 AP endonucleases family 1 signature 1." gene 542622..547526 /gene="scpC" /locus_tag="SEQ_0563" /db_xref="GeneID:7696772" CDS 542622..547526 /gene="scpC" /locus_tag="SEQ_0563" /EC_number="3.4.21.96" /codon_start=1 /transl_table=11 /product="chemokine protease ScpC" /protein_id="YP_002745929.1" /db_xref="GI:225869982" /db_xref="GeneID:7696772" /translation="MEKKERFSLRKYKSGMVSVLIGILFLTGMGSVVAEEQGVSSAHV SAGQHQESREVLSVSQASEGAAVNAQDIDSQSSKAEEKTEEAMATGLVSSEMEALTES NQSVKQQEESRELPPVNMDTHRWIKTEGAWNRGYKGQGKVIAVIDTGIDASHHAMRIT NPAAAKFTSKADIDQRKKAAGIQYGVWLSDKVVFAHNYVENNDKVKEIKDDPFEGLDD LDFDVIVQQIDIRRNRPQSIEAPQETVIKLDDTSGGTIIDWQDTDDDSKYESHGMHVT GIAAGNGLKAAAAGERFLGIAPEAQVMFMRVFTHDLMGTGDPLFIKAIEDAVALGADV INLSLGSANGSQLNGNRALMAAIEKARQAGVSVVVAAGNERAFGSDHADPLVTNPDYG LVGAPSAGRTPTSVASINNKVIIERLMTVEGLKDRADLNHGKAIYLESVDFKDIKTSL GFDVPYSFVYVKALTKEGYQEREVSGKIVLVQRDPNRKYDDIIAEAKQYGAAGVLIFN NEPGKANRTMRLSSKGMVLPSAFISHEFGMAMAALNGNGTGTLTFDAEVSKAISQKGN EMNYFSNWGLTSDGYLKPDITAPGGDIYSTFNDDHYGSQSGTSMATPHIAGASLLVKQ YLEALQPQLAKDKLADLVKNILMSNAQIHINPKTNTTTSPRQQGAGLLNIETAVTSGL YLTGKDNYGSISLGNVTDQISFEVTIHNLSNQAKSLRYQTELLTDQVDTKEGRFALRS RSLKTYQGEQVDVPAQGHKTITITLDASNFTEELSKQMPNGYYLEGFVRFVDSKDEHK DNINIPFVGFKGAFENLPVVEASIYELKAQGKTGFYFDSSGLKDEIYVGNHFTGLVTV GTDTNVSMTTIADNGLHTLGTFRNKDGKFVLERNAVGYPVLAISPNGDNNQDFAAFKG VFLRKYQGLQARVYKGTDTDRKELLWTSPSALQGDKNFNSDIRFAKSTTLLETGFSGK SLTGADLPDGKYHYVVSYYPDVVGAKRQEMVFEVIVDRQTPELGTASYNPVTHRFRPS QWLDRGQAGVLRDSVFYLETKDDKPYTITINDGLKYVTVSDNKQFVERLADGSFVLPV DQVALGDFYYMVEDFAGNVAIAKLGNHLPEKIGQAELALTLTDINAQHQLSYSDNLNM TAADTGLVTNEAELLIISRNRPQSRLAKLGQTAVISPNDDGNKDFVAFKGLPHQVYQD LKVTVFAQEDTAMTSPIWSSQPGASVANVDSTAWYGTRASGARVMSGHYRYVVSYLDA NGMPQAEAYAVTVSHQKPVITPASFQADGATEVFRPGPSKGQSPIGIVREEVFYLVKK DGRKFDLTVEDQLIRFKDNKVMIAQNADGTYTIPKVEGVAEADYYYLVEDEAGQIAYM SLAALRAVGPDKGVVSVALALDVLENKKEPAFTYLIRDEQGKPIEQLDYFNSSANSLI LPFGRYTVELLAYDNHLFELRSDNLVSFSLDADTRLASVAFEMTRPIVASVWLLFNQV LPEGSRVSLKAANGQLISLAPSLYVPSAYGKTLRQGSYEVLVELPEGYQLIGQGGLEV SHNGVIELTFEVIKAKQPQLEHQAGGLTHYTGSSITSSALTAQAVKKAQVLPSTGEQA AVNLVLLGLLSLGAAGSCQRQKKY" sig_peptide 542622..542723 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0563 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.718 between residues 34 and 35" misc_feature 542622..542702 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:PFAM:PF04650" /note="HMMPfam hit to PF04650, YSIRK type signal peptide, score 3.6e-07" misc_feature 542655..542723 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0563 by TMHMM2.0 at aa 12-34" misc_feature 542982..544631 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:PFAM:PF00082" /note="HMMPfam hit to PF00082, Subtilase family, score 6.3e-41" misc_feature 543048..543083 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:Prosite:PS00136" /note="PS00136 Serine proteases, subtilase family, aspartic acid active site." misc_feature 543432..543464 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:Prosite:PS00137" /note="PS00137 Serine proteases, subtilase family, histidine active site." misc_feature 543966..544253 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:PFAM:PF02225" /note="HMMPfam hit to PF02225, PA domain, score 4.2e-13" misc_feature 544440..544472 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:Prosite:PS00138" /note="PS00138 Serine proteases, subtilase family, serine active site." misc_feature 544698..545060 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:PFAM:PF06280" /note="HMMPfam hit to PF06280, Domain of Unknown Function (DUF1034), score 6.8e-46" misc_feature 547404..547520 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:PFAM:PF00746" /note="HMMPfam hit to PF00746, Gram positive anchor, score 8.2e-05" misc_feature 547428..547445 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:Prosite:PS00343" /note="PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide." misc_feature 547473..547505 /gene="scpC" /locus_tag="SEQ_0563" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 547701..549380 /locus_tag="SEQ_0564" /db_xref="GeneID:7696943" CDS 547701..549380 /locus_tag="SEQ_0564" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745930.1" /db_xref="GI:225869983" /db_xref="GeneID:7696943" /translation="MTKKVASLVLIGLDSLILAGFYWIYLPPMNVMSLEFWFFVILAL ILAMVSLFILSLFGLKKTVTSFFTQKSGRKDVTSGLSLKQLTGGIKWLGLALAVIIAG LSLLLAVNTRMFRAKSYAHVIKVKDADFNKDFPDTDLSALALLDRDSAEKIGDTYLGT IDKVSQFGISDEYRQITIGKLPYRVSPLEYKSFWKWLTNRKDGIGYYVKVNQTTGKAE LVKLNQPMKYSHSEFMFRDTMRHLRFQYPMTIFSDPSFEVDDDGNPYYVATTYAPKFG LSSQEPTGVILLDAVSGKSQYYELKDVPKWVDRVYSADNVLERVNDYYTYQKGYWNTV FSQTDVKQTTDSYNYITIGSDIYLYTGITSATADSSNLGFILVNMRTREVTNYKLPSA TEASAMKSAEGEVQEKKYTATAPTLVKLNDKAYYLISLKDGAGLIKSYALVDAEDYQQ VTVNNDIQTLISQFTDKDTSSLSVSDTNDQKVKMITGQVEQLASQIISGTTVYYISSK GQIYKIKASSETSDRLPFLKVGDQFKAQLADDNYLNHMTIESSSADQAITE" misc_feature join(547713..547781,547809..547877,547959..548027) /locus_tag="SEQ_0564" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0564 by TMHMM2.0 at aa 5-27, 37-59 and 87-109" gene 549915..550936 /locus_tag="SEQ_0566" /pseudo /db_xref="GeneID:7696773" misc_feature 549915..550936 /locus_tag="SEQ_0566" /note="CDS contains a frameshift around codon 182. Similar to Streptococcus equi M-like protein precursor emmszw60 UniProt:Q54071 (EMBL:U04620 (376 aa) fasta scores: E()=3.4e-14, 34.615% id in 390 aa" /pseudo /db_xref="PSEUDO:CAW92830.1" misc_feature 549951..550019 /locus_tag="SEQ_0566" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0566 by TMHMM2.0 at aa 13-35" /pseudo gene 550805..550924 /locus_tag="SEQ_0567" /db_xref="GeneID:7696774" misc_feature 550805..550924 /locus_tag="SEQ_0567" /inference="protein motif:PFAM:PF00746" /note="HMMPfam hit to PF00746, Gram positive anchor, score 1.6e-11" misc_feature 550829..550846 /locus_tag="SEQ_0567" /inference="protein motif:Prosite:PS00343" /note="PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide." misc_feature 550847..550915 /locus_tag="SEQ_0567" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0567 by TMHMM2.0 at aa 112-134" gene 551322..552020 /locus_tag="SEQ_0568" /db_xref="GeneID:7696775" CDS 551322..552020 /locus_tag="SEQ_0568" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745931.1" /db_xref="GI:225869984" /db_xref="GeneID:7696775" /translation="MSKRKRKTYQVYEGLRCAMMLCFISGYVNAFTYMTQGRRFAGVQ TGNLLSFAIRLSERQFDQALQFLLPIIVFMIGQAFTYFMHCWANKHGLHWYLLSSFIL TLIALVTAILTPLLSSFFTVSALAFFASIQVDTFKTLRGASYANVMMTGNIKNAAYLL TKGLYENNKELVHIGRNTLIIILSFALGVVCSTLLSLSYGEYALSPMLIPLCYVNYLL AQEFYHHQVSLKND" sig_peptide 551322..551411 /locus_tag="SEQ_0568" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0568 by SignalP 2.0 HMM (Signal peptide probability 0.645) with cleavage site probability 0.515 between residues 30 and 31" misc_feature join(551355..551423,551514..551582,551601..551669, 551853..551921) /locus_tag="SEQ_0568" /inference="protein motif:TMHMM 2.0" /note="4 transmembrane helices predicted for SEQ0568 by TMHMM2.0 at aa 12-34, 65-87, 94-116 and 178-200" misc_feature 551364..551978 /locus_tag="SEQ_0568" /inference="protein motif:PFAM:PF06912" /note="HMMPfam hit to PF06912, Protein of unknown function (DUF1275), score 9e-76" gene 552238..554241 /locus_tag="SEQ_0569" /db_xref="GeneID:7696776" CDS 552238..554241 /locus_tag="SEQ_0569" /EC_number="6.1.1.10" /codon_start=1 /transl_table=11 /product="methionyl-tRNA synthetase" /protein_id="YP_002745932.1" /db_xref="GI:225869985" /db_xref="GeneID:7696776" /translation="MTKKKPFYITTPIYYPSGKLHIGSAYTTIACDVLARYKRMLGYD VFYLTGLDEHGQKIQDKAQEAGLSPQAYVDGMAEEVKALWKLLDISYDKFIRTTGDYH EEVVAAVFERLLAQDDIYLGTYSGWYSVSDEEFFTESQLAEVYRDEAGKVIGGVAPSG HEVEWVSEESYFLRLSKYADRLVAFFKAQPDFIQPDGRMNEMLKNFIEPGLEDLAVSR TTFTWGVPVPSNPKHVVYVWIDALLNYATALGYGQKDHANFDKFWSGRVFHMVGKDIL RFHSIYWPILLMMLDLPMPERLIAHGWFVMKDGKMSKSKGNVIYPEMLVERFGLDPLR YYLMRSLPVGSDGTFTPEDYVGRINYELANDLGNLLNRTVAMINKYFDGRVPAYVRNV TAFDADLEQVVADHISEYHKQMEAVDYPRALEAVWTIISRTNKYIDETAPWVLAKAAD SKEQLASVMAHLAASLRVVAHLIQPFMMTTSAAIMEQLGLGAKYHLEELDLADLPTGV TVVAKGEPIFPRLDMEAEIDYIKEQMTMSIAKPQEADWDPEKVALKSEKDTITFEAFD AVEIRVAEVKEVSRVEGSEKLLRFRLDAGDGSDRQILSGIAAYYPNEQELVGKKVQIV ANLKPRKMMKKYISQGMLLSAEHDGKLTVLTVDPAVPNGTIIG" misc_feature 552298..552330 /locus_tag="SEQ_0569" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 553945..554232 /locus_tag="SEQ_0569" /inference="protein motif:PFAM:PF01588" /note="HMMPfam hit to PF01588, tRNA binding domain, score 2.8e-30" gene 554922..555935 /locus_tag="SEQ_0570" /db_xref="GeneID:7696777" CDS 554922..555935 /locus_tag="SEQ_0570" /EC_number="1.17.4.1" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase beta subunit" /protein_id="YP_002745933.1" /db_xref="GI:225869986" /db_xref="GeneID:7696777" /translation="MTQYYYDRSQSPIDYALSQTKKSLRSVNWNQLNDDKDLEVWNRV TQNFWLPEKVPVSNDLNSWRSLGEDWQRLITRTYTGLTLLDTVQATVGDVAQIQHSLT DHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHDWVVSTESLQERARVLIPYY TGDDPLKSKVAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDIIRLILRDKVIHNYYSG YKYQQKVAALSPEKQAEMKAFVFDLLYQLIDLEKAYLRELYDGFDLADDAIRFSVYNA GKFLQNLGYDSPFTEEETRISPEVFAQLSARADENHDFFSGNGSSYVMGVTEETIDDD WEF" misc_feature 554982..555818 /locus_tag="SEQ_0570" /inference="protein motif:PFAM:PF00268" /note="HMMPfam hit to PF00268, Ribonucleotide reductase, small chain, score 3e-38" misc_feature 555429..555497 /locus_tag="SEQ_0570" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0570 by TMHMM2.0 at aa 170-192" gene 555937..556344 /locus_tag="SEQ_0571" /db_xref="GeneID:7696778" CDS 555937..556344 /locus_tag="SEQ_0571" /codon_start=1 /transl_table=11 /product="ribonucleotide reductase protein" /protein_id="YP_002745934.1" /db_xref="GI:225869987" /db_xref="GeneID:7696778" /translation="MAARVMLVYFSSRSNNTHRFVQKLDVRALRIPVTGEPLLVDEDY ILIVPTYAAGGSDSKGAVPKQVIHFLNKANNRRHCKGVISSGNTNFGDTFAIAGPIIA QKLQVPLLHQFELLGTQRDVIKVQAILAGDEAL" misc_feature 555958..556317 /locus_tag="SEQ_0571" /inference="protein motif:PFAM:PF07972" /note="HMMPfam hit to PF07972, NrdI Flavodoxin like, score 3e-73" gene 556391..558565 /locus_tag="SEQ_0572" /db_xref="GeneID:7696779" CDS 556391..558565 /locus_tag="SEQ_0572" /EC_number="1.17.4.1" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase alpha subunit" /protein_id="YP_002745935.1" /db_xref="GI:225869988" /db_xref="GeneID:7696779" /translation="MSQKESYLSLNALTRFKRADGTYHFDSDKEAVQRYLEEHVYPQS LSFDSLEEKWRYLVAHDYYDQEILKAYSAECITEAFTYAYQQKFSFLSLMGAMKFYQS YALKTLDGSQYLEHFEDRAVMNALFLANGDPDLVRDLIDQILSGRFQPATPTFLNAGK KRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLREVGSPIKGIENQ ATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFLDTKRENADEKIRIKS LALGVVIPDITFQLARENKDMALFSPYDIKRVYGKDMSDIAITEEYDRLVANPAIKKT YISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVMSNLCSEIAQVSTAST FEEDLTFKQIGEDICCNLGSINIAEAMKHAVGFEQLIATSVRALDHVSRASDVSCAPS VEKGNAANHAVGLGAMNLHGFLATNHIFYDSAEAVDFTDLFFHTMAYYAFKASSQLAK EKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYGLRVPSVADWQELVATI QETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHLGRIYVPAYQISDDN YAYYERGAYEVGPEPIINIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKC ASIYYVRVRQDVLEGSEQYEEDTIVALTDTNASGEACQSCML" misc_feature 556409..556654 /locus_tag="SEQ_0572" /inference="protein motif:PFAM:PF08343" /note="HMMPfam hit to PF08343, Ribonucleotide reductase N-terminal, score 5.4e-35" misc_feature 556655..556879 /locus_tag="SEQ_0572" /inference="protein motif:PFAM:PF00317" /note="HMMPfam hit to PF00317, Ribonucleotide reductase, all-alpha d, score 2.5e-25" misc_feature 556892..558466 /locus_tag="SEQ_0572" /inference="protein motif:PFAM:PF02867" /note="HMMPfam hit to PF02867, Ribonucleotide reductase, barrel doma, score 2e-164" misc_feature 558065..558133 /locus_tag="SEQ_0572" /inference="protein motif:Prosite:PS00089" /note="PS00089 Ribonucleotide reductase large subunit signature." repeat_region complement(558954..559698) /note="ISSeq4" gene complement(559031..559699) /locus_tag="SEQ_0573" /pseudo /db_xref="GeneID:7696780" misc_feature complement(559031..559699) /locus_tag="SEQ_0573" /note="gene remnant generated by the insertion of the an IS element and subsequent recombination events" /pseudo /db_xref="PSEUDO:CAW92841.1" repeat_region complement(559699..561127) /note="ISSeq3" repeat_region 559707..559718 /note="perfect inverted repeat flanking IS element" gene complement(559731..560534) /locus_tag="SEQ_0574" /db_xref="GeneID:7696781" CDS complement(559731..560534) /locus_tag="SEQ_0574" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745936.1" /db_xref="GI:225869989" /db_xref="GeneID:7696781" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITEYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature complement(559746..560228) /locus_tag="SEQ_0574" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 8.8e-38" gene complement(560558..561073) /locus_tag="SEQ_0575" /db_xref="GeneID:7696782" CDS complement(560558..561073) /locus_tag="SEQ_0575" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002745937.1" /db_xref="GI:225869990" /db_xref="GeneID:7696782" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature complement(560630..560911) /locus_tag="SEQ_0575" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature complement(560714..560752) /locus_tag="SEQ_0575" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" misc_feature complement(560954..561019) /locus_tag="SEQ_0575" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" repeat_region complement(561108..561119) /note="perfect inverted repeat flanking IS element" gene 561113..561505 /gene="essA" /locus_tag="SEQ_0576" /pseudo /db_xref="GeneID:7696783" misc_feature 561113..561505 /gene="essA" /locus_tag="SEQ_0576" /note="CDS is truncated by the insertion of the upstream IS element" /pseudo /db_xref="PSEUDO:CAW92847.1" misc_feature 561392..561460 /gene="essA" /locus_tag="SEQ_0576" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0576 by TMHMM2.0 at aa 94-116" /pseudo gene 561600..561734 /locus_tag="SEQ_0577" /db_xref="GeneID:7696927" CDS 561600..561734 /locus_tag="SEQ_0577" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745938.1" /db_xref="GI:225869991" /db_xref="GeneID:7696927" /translation="MTVLGKALGPVANMKSSFDQQVASQSIQMLESLPAEKSVCSTIL" gene 561821..562062 /gene="esaB" /locus_tag="SEQ_0578" /pseudo /db_xref="GeneID:7696784" misc_feature 561821..562062 /gene="esaB" /locus_tag="SEQ_0578" /note="CDS contains a frameshift after codon 13. Frameshift occurs at a poly T hexamer" /pseudo /db_xref="PSEUDO:CAW92850.1" gene 562065..563222 /gene="essB" /locus_tag="SEQ_0579" /db_xref="GeneID:7696926" CDS 562065..563222 /gene="essB" /locus_tag="SEQ_0579" /note="membrane protein" /codon_start=1 /transl_table=11 /product="ESAT-6 secretion system protein EssB" /protein_id="YP_002745939.1" /db_xref="GI:225869992" /db_xref="GeneID:7696926" /translation="MEKKMKTIIRELLVEDVKGDAEVAYTLLASEHSLFVPSKLEQAF DKLILEASIDDMYDWSALEAMIVEEKLRHLLNLSELFDQLLDSKFTYSFTPDNLVFNR NAEPQLIFRGIKDQVPPYQPLEREVFVNTLKCMTIALLDKKTSYDALMGGKLPFYKGN LFCEAVAKAEALQELQELLATKYHEEQKDNKEHFSRVANKTISRLKLTTICSSVLALL SLAGVLYFLLFAMPYQEMVASLRMAFINQDYSKVITTAKHTDSKALSQGDKYIVAYSV IMTEPLTDKQKEELSKISNQSNEDYLRYWVLIGQARIDDAMDIASYLDDPQLLMYGLT KKIDDVQRDPNLTAEARTEQLNSYKSKLDELKKAYLTPKEEKAAGSSSDKE" misc_feature 562692..562760 /gene="essB" /locus_tag="SEQ_0579" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0579 by TMHMM2.0 at aa 210-232" gene 563234..567610 /gene="essC" /locus_tag="SEQ_0580" /db_xref="GeneID:7696928" CDS 563234..567610 /gene="essC" /locus_tag="SEQ_0580" /note="membrane protein" /codon_start=1 /transl_table=11 /product="ESAT-6 secretion system protein EssC" /protein_id="YP_002745940.1" /db_xref="GI:225869993" /db_xref="GeneID:7696928" /translation="MTYLIYDDNAYHLYSDTVYQLGPSSGSDIFLPLLEDITLSVEGS GVVLLEESYSTGKHCVALSDEVTVTLLILEAVTKYLLPDSSLYISGETTAALQLLDYP SELVLTLDSDSASCYSPVSYYLNGKWTKGKQPLKASDELVFSDGLVLSFQDQLLSIQS LYAIQTALLPLTEAVAEDRASEFHRSPRIILREPEGKVTIASVPTDDEGKRQSLLKLI ITPLAMIVFTGLSYVFFRGGGMLMMMMGMSVITIGSSIHSYFSDKKWHKEAQQQKIKD YLAYLDTKYVELAGYREEQIEALLYHYPNMTTILEMAQKTDRRIYEKAPYHFDFLTYR LGLGDTPASFHIDYSDSELTKHHEKAKQRVQELIAYYQVTAQVPIQNAIASPIGYIGA RKVVIEQVQQLMMQIATFHSYHDVQFIPIFREEELPLWNWSRWLPHTKLKVLNSRGFV YSQRTRDQLLTSLYQLIKERQLDSEQDKGTEKQYTPHYIVLITDMSLMLDHNIMEYIN EDLSHLGIHYIFVEEVIESLPEHVKTVIDYRGDKHAQLILQEGLYLNKAFTPLQPLSM KDKEVFARHMAGINHVETLRNAIPNSVTFLEMYGVNKVEELNLLKRWKENEAYQTMAV PLGVRGRDDILYLNLHEKAHGPHGLIAGTTGSGKSELVQSYILSLAVNYHPYEVAFLL IDYKGGGMANLFADLPHVVGTITNLDGNQANRALVSIKAELKKRQRIFLENDVNHIDQ YTKLFKEGRVKEPLPHLLIISDEFAELKANQPEFMDELVSTARIGRSLGVKLILATQK PSGVVNDQIWSNAKFKIALKVQDVADSREVIKTPDAAEITQVGRAYLQVGNNEIYELF QSAWSGADYNPKGRHTIQHETTVYEITANGQYQAINKDLSGLDKKREAKSMPTELDAV VAEAQQLFEDLHIPKVASPWLPPLSEKIYASDLQSTHFKDYWGQTQDLQPVLIGYQDI PERQEQSPLYFHMEKAGHILLVSSPGFGKSTFLQGFALDVMRKQTPAQAHFYLYDFGT SGLIALSDFPHVADYFTLDETDKIMKSLRYLSEEIKTRKHALSKAKATNLNQYNQLSK DTFPALFVIIDGFDSVMDAPFVDAVYNVLNVIARDGASLGMYLVVTLSRLNTMRLQLQ SNFKTKLSLFLFDNSDLSSVVGRSNIPLDDIKGRAIMKRDDIIQFQIALPYSSEYYTD YMAEVKREVEAMRAVYQGALPAAIPMLPEKVTPDMIAAMSDSAQDFVIGLEREDVVPA GFTFKKSILMASDSPAFVANYYKLLDFQLQRLADQYRTVILDPSQRIARQFFEDSQRF STALDVGDTLRAIVEDFKKRLAAPGQDYQKWLVVIPDIAATALAAGISEEDFKQLVTE GSQYGVTLIFVGAYQDLVNNTYDNFVKLANQLIEQVFLGMRISDQSHTRYAYISNEPS LRPTQGYILYPEGYDFIQLLEI" misc_feature 563870..563938 /gene="essC" /locus_tag="SEQ_0580" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0580 by TMHMM2.0 at aa 213-235" misc_feature 565046..565636 /gene="essC" /locus_tag="SEQ_0580" /inference="protein motif:PFAM:PF01580" /note="HMMPfam hit to PF01580, FtsK/SpoIIIE family, score 3.4e-38" misc_feature 565187..565210 /gene="essC" /locus_tag="SEQ_0580" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 566084..566653 /gene="essC" /locus_tag="SEQ_0580" /inference="protein motif:PFAM:PF01580" /note="HMMPfam hit to PF01580, FtsK/SpoIIIE family, score 2.4e-24" gene 567623..567952 /locus_tag="SEQ_0581" /db_xref="GeneID:7696929" CDS 567623..567952 /locus_tag="SEQ_0581" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745941.1" /db_xref="GI:225869994" /db_xref="GeneID:7696929" /translation="MSTVTMLPLGSIVILKGNTKKMMIIARVIAAPIKGEVYRFDYGA CLYPEGMMGDSLIYFNHDDIFKIIQEGYADDDNALMLETIAQALATTDIPKGDVSALN DRKTVED" gene 567956..568390 /locus_tag="SEQ_0582" /db_xref="GeneID:7696785" CDS 567956..568390 /locus_tag="SEQ_0582" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745942.1" /db_xref="GI:225869995" /db_xref="GeneID:7696785" /translation="MGQVDYNHINQLQRQVDQHRASLSTATAEIASIDEKLERLRCAK ASVGAIQGDVHQIKVSVMAKRDQPDWKGERKDRLMSSWEEFSHDYRHFQLELDAYYDA ICDTITRLENQKYEQQGLIGWCQSMINSLGNEIEKLFHIREG" gene 568392..568676 /locus_tag="SEQ_0583" /db_xref="GeneID:7696786" CDS 568392..568676 /locus_tag="SEQ_0583" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745943.1" /db_xref="GI:225869996" /db_xref="GeneID:7696786" /translation="MFGVIQLSEVVFGAHVLSLTAAKASLSDVKASFPSHQSSSKVLD LYQSEFEALSQLVAAYARLLEKDIALIAEAGQELALTDKQLGQAIGFRLQ" gene 568686..568763 /locus_tag="SEQ_0583a" /pseudo /db_xref="GeneID:7695495" misc_feature 568686..568763 /locus_tag="SEQ_0583a" /pseudo repeat_region complement(568766..570168) /note="ISSeq11" gene complement(568766..569286) /locus_tag="SEQ_0584" /pseudo /db_xref="GeneID:7695496" misc_feature complement(568766..569286) /locus_tag="SEQ_0584" /pseudo gene complement(569375..570049) /locus_tag="SEQ_0585" /pseudo /db_xref="GeneID:7697415" misc_feature complement(569375..570049) /locus_tag="SEQ_0585" /pseudo misc_feature complement(569375..569593) /locus_tag="SEQ_0585" /inference="protein motif:PFAM:PF01610" /note="HMMPfam hit to PF01610, Transposase, score 1.3e-06" /pseudo misc_feature complement(569633..569698) /locus_tag="SEQ_0585" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1376.000, SD 3.87 at aa 130-151, sequence EAFTHIAAKLAISTSTVYHKLK" /pseudo gene 570430..571140 /locus_tag="SEQ_0587" /db_xref="GeneID:7695579" CDS 570430..571140 /locus_tag="SEQ_0587" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein" /protein_id="YP_002745944.1" /db_xref="GI:225869997" /db_xref="GeneID:7695579" /translation="MELTMLLMVSVFIAGLLSFFSPCIFPVLPVYLGILLDSDDSRSI TIFGKKLYWYGIVKTLAFISGLSTIFIILGYGAGLLGNILYAAWFRYLLGAFVILLGI HQMEIVTIKKLQFQKSVAFQNKKDRNAVLNAFLLGITFSFGWTPCVGPVLSSVLALAA SGGSGAWQGGFLMIIYTLGLGLPFLLLSFASGIVLKHFNKLKPHIPLLKKLGGLLIVI MGLLLMTGNLNSLSGLFE" misc_feature join(570457..570525,570580..570648,570691..570759, 570817..570885,570943..571011,571048..571107) /locus_tag="SEQ_0587" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0587 by TMHMM2.0 at aa 10-32, 51-73, 88-110, 130-152, 172-194 and 207-226" misc_feature 570460..571104 /locus_tag="SEQ_0587" /inference="protein motif:PFAM:PF02683" /note="HMMPfam hit to PF02683, Cytochrome C biogenesis protein transmembran, score 1.8e-56" misc_feature 570847..570876 /locus_tag="SEQ_0587" /inference="protein motif:Prosite:PS00086" /note="PS00086 Cytochrome P450 cysteine heme-iron ligand signature." gene 571154..571804 /locus_tag="SEQ_0588" /db_xref="GeneID:7695580" CDS 571154..571804 /locus_tag="SEQ_0588" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_002745945.1" /db_xref="GI:225869998" /db_xref="GeneID:7695580" /translation="MKKTTFLTTGLACLALLTACSAKDKMAMNDSKKDHMTRTDDKSK MKKDQKDKMSDKKDMMSDDKHMSDADKASKNDGQMAPDFELKSIDGKTYRLSDFKGKK VYLKFWASWCSICLSTLGDTQSLATMKDKDFEVLTIVSPGHQGEKSEADFKKWFEGTD FKDLPVLLDPDGKLLEAYGVRSYPTEIFVGSDGVLAKKHIGYAKKSEIEKTLKEIK" sig_peptide 571154..571216 /locus_tag="SEQ_0588" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0588 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.651 between residues 21 and 22" misc_feature 571181..571213 /locus_tag="SEQ_0588" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 571376..571798 /locus_tag="SEQ_0588" /inference="protein motif:PFAM:PF08534" /note="HMMPfam hit to PF08534, Redoxin, score 1.3e-26" gene 571822..572934 /locus_tag="SEQ_0589" /db_xref="GeneID:7695581" CDS 571822..572934 /locus_tag="SEQ_0589" /EC_number="1.8.4.11" /codon_start=1 /transl_table=11 /product="peptide methionine sulfoxide reductase" /protein_id="YP_002745946.1" /db_xref="GI:225869999" /db_xref="GeneID:7695581" /translation="MEHKWKLLLLVFGALVFLGGVLMVFQRGYATSYHNNQVKLPAKG TSQLKKTANAKLPEKKKEIYLAGGCFWGVEEYFSNVDGVLDAVSGYANGRGDTTSYQL LHQTGHAETVQVVYDANRISLKELLLHYFRIIDPTSLNKQGNDRGSQYRTGIYYTDPS DLTTIDMVFQEKASDYKKKIVVEKAPLKSFTKAEEYHQDYLKKNPNGYCHINVNEASY PVIDKTKYPKPSKEEIKKKLSKDEYRVTQNNETEKAFSNRYWDSFEAGIYVDVVTGEP LFSSKDKFESGCGWPSFSRPISPDVLRYKTDKSFNMNRTEVRSRSGNSHLGHVFTDGP KDQGGLRYCINSLSIRFIPKAEMEAKGYGYLLTAVD" sig_peptide 571822..571911 /locus_tag="SEQ_0589" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0589 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.595 between residues 30 and 31" misc_feature 571840..571908 /locus_tag="SEQ_0589" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0589 by TMHMM2.0 at aa 7-29" misc_feature 572002..572463 /locus_tag="SEQ_0589" /inference="protein motif:PFAM:PF01625" /note="HMMPfam hit to PF01625, Peptide methionine sulfoxide reductase, score 1.4e-83" misc_feature 572512..572883 /locus_tag="SEQ_0589" /inference="protein motif:PFAM:PF01641" /note="HMMPfam hit to PF01641, SelR domain, score 2.7e-81" gene 573202..573942 /locus_tag="SEQ_0590" /db_xref="GeneID:7695582" CDS 573202..573942 /locus_tag="SEQ_0590" /codon_start=1 /transl_table=11 /product="response regulator protein" /protein_id="YP_002745947.1" /db_xref="GI:225870000" /db_xref="GeneID:7695582" /translation="MYSLLIVEDEYLVRQGIRSLVDFDQFAIDRIAEAENGQVAWELF QENPYDIVLTDINMPKLNGIQLAELIKARAPKTHLVFLTGYDDFNYALSALKLGADDY LLKPFSKSDVEEMLKKLKQKLEKLKKTEALQKLVDKPQQEGSEIKLAIQERLADSSLT LKSLSSQLGFSPNYLSVLIKKDLGLPFQDYLIQERLKKAKLLLLTTDLKVYEIAEQVG FEDINYFSQRFKQLVGMTPRQYKKGEGQ" misc_feature 573205..573552 /locus_tag="SEQ_0590" /inference="protein motif:PFAM:PF00072" /note="HMMPfam hit to PF00072, Response regulator receiver domain, score 6.8e-36" misc_feature 573634..573777 /locus_tag="SEQ_0590" /inference="protein motif:PFAM:PF00165" /note="HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 8.7e-06" misc_feature 573676..573741 /locus_tag="SEQ_0590" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1473.000, SD 4.20 at aa 159-180, sequence LTLKSLSSQLGFSPNYLSVLIK" misc_feature 573784..573912 /locus_tag="SEQ_0590" /inference="protein motif:Prosite:PS00041" /note="PS00041 Bacterial regulatory proteins, araC family signature." misc_feature 573793..573927 /locus_tag="SEQ_0590" /inference="protein motif:PFAM:PF00165" /note="HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 2e-12" gene 573939..575657 /locus_tag="SEQ_0591" /db_xref="GeneID:7695583" CDS 573939..575657 /locus_tag="SEQ_0591" /codon_start=1 /transl_table=11 /product="sensor histidine kinase" /protein_id="YP_002745948.1" /db_xref="GI:225870001" /db_xref="GeneID:7695583" /translation="MKRYPLLVQLVSYFFLIVISLITILGVIYYQTSSHNIRQLIERE TRQSIRQSSQFIDAYIKPLKETTSALASHAEIQSFAKAANSSHQEQVLALMTTVLSTN SDLRSAVLVTKDGRMVTTNPKLIMTTSHDMMAEPWYKSAIDRKAMPVLTPARQLSSHS KKDWVVSVTQEVVDETGNNLGVLRLDIGYNTIKSSLDQLQLGRRGFAFIVNDKHEFVY HPKNTVYSSEREMAAMKPYLAVADGYTKPKDYFVYQRVIPDSQWTLIGVASLDQLYHV QRQIFWSFLGTGLLATVICGLGTVFVLRSWIGPIRRLQALILAIQKGNRQLRAEEIGS PELADLARQFNAMLDQIDSLMISVADKEKAIGQYRLQALASQINPHFLYNTLDTIIWM AEFNDSQRVVDVTKSLAKYFRLALNQGNELISLADELDHARQYLFIQKQRYGDKLHYE IKGLEKYQDFMIPKLILQPLVENAIYHGIKEVDRPGMIRVTVLEADRHVILSVWDNGK GISLADDSSQALLECGGVGLKNVDQRLKLQYGHLYRMAITSEQAVFTEIKLYLPKPLD GLNELP" sig_peptide 573939..574028 /locus_tag="SEQ_0591" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0591 by SignalP 2.0 HMM (Signal peptide probability 0.690) with cleavage site probability 0.647 between residues 30 and 31" misc_feature join(573966..574025,574779..574847) /locus_tag="SEQ_0591" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0591 by TMHMM2.0 at aa 10-29 and 281-303" misc_feature 574383..574634 /locus_tag="SEQ_0591" /inference="protein motif:PFAM:PF02743" /note="HMMPfam hit to PF02743, Cache domain, score 1.6e-17" misc_feature 574788..574997 /locus_tag="SEQ_0591" /inference="protein motif:PFAM:PF00672" /note="HMMPfam hit to PF00672, HAMP domain, score 3.2e-13" misc_feature 575043..575291 /locus_tag="SEQ_0591" /inference="protein motif:PFAM:PF06580" /note="HMMPfam hit to PF06580, Histidine kinase, score 1e-42" misc_feature 575310..575630 /locus_tag="SEQ_0591" /inference="protein motif:PFAM:PF02518" /note="HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP9, score 6e-11" gene 575696..576784 /locus_tag="SEQ_0592" /db_xref="GeneID:7695584" CDS 575696..576784 /locus_tag="SEQ_0592" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745949.1" /db_xref="GI:225870002" /db_xref="GeneID:7695584" /translation="MSLESDYFKRKSPVFEALIPYGFTQEGDTYCYQESFMEGDFKAL ITIKSSGQLSARVIDTDLGEDYLPLRNDRQQGVYVGQVRQAYLELLGRLSAACFRSTP FQTRQANQVATSISQQWNDPLDYPFEKFPNIATYRVSGKWYAMVLPLLADKLGQVPKV LQGQMVEVLTVRIAPNQLTHLLQQRGVYPAYHMSKKTWISLLLDGTLADDQLWELVTK SRQLANPNGLANPDGPDYWVIPANLSYYDIDAEFAANPDILWTQKASIKAGDYVFIYI TAPTRSIRYACQVLRSDIPNQGYRKNAKIKTLMSLRLLHCYEDGLISLDLMKQYGVNA VRGPRRLSPQLVAFLKEKEYFKDVKQKE" misc_feature 576038..576367 /locus_tag="SEQ_0592" /inference="protein motif:PFAM:PF04237" /note="HMMPfam hit to PF04237, Protein of unknown function (DUF419), score 1.5e-37" misc_feature 576089..576130 /locus_tag="SEQ_0592" /inference="protein motif:Prosite:PS00213" /note="PS00213 Lipocalin signature." gene 576799..577503 /locus_tag="SEQ_0593" /db_xref="GeneID:7695585" CDS 576799..577503 /locus_tag="SEQ_0593" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745950.1" /db_xref="GI:225870003" /db_xref="GeneID:7695585" /translation="MTQFIADQSFWELFPDAKLGVLLLRNYDNQEDSPQEVKQLLADS HDIAKQYLTEESFSDNEIIQVYRQAYQRFKTKKGARSSIEALLKRVANGQVLSSINPL VDIYNTASLRFGLPVGAEDSDCFVGDLRLTLTEGGDEFYLIGDSKNSPTLPNELCYKD DAGAVCRCLNWRDGERTMITDRTKNAFLVIEALDSKTQARLQDALKFIEDKAKCYLKA ETALYTLDQASPSITF" misc_feature 577003..577437 /locus_tag="SEQ_0593" /inference="protein motif:PFAM:PF03483" /note="HMMPfam hit to PF03483, B3/4 domain, score 2.6e-26" gene 577763..578251 /locus_tag="SEQ_0594" /db_xref="GeneID:7695586" CDS 577763..578251 /locus_tag="SEQ_0594" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745951.1" /db_xref="GI:225870004" /db_xref="GeneID:7695586" /translation="MELFDKVDDTLKALAIDYQLVEHEPALTTEQADQFIEGIEGVRT KTMFLTTRKKNHFYLIIMDDTKRLDMNRFKELVGEKQIKMASAECLLAKMQLPPGVVS PFGLLNNEDKDIQVYVDKAIAHEARMSFHPNTNDKTIFIQTDDLFKFLAAIGYAVNIV DL" misc_feature 577799..578221 /locus_tag="SEQ_0594" /inference="protein motif:PFAM:PF04073" /note="HMMPfam hit to PF04073, YbaK / prolyl-tRNA synthetases associated do, score 8e-08" gene complement(578761..579234) /locus_tag="SEQ_0595" /db_xref="GeneID:7695587" CDS complement(578761..579234) /locus_tag="SEQ_0595" /codon_start=1 /transl_table=11 /product="arginine repressor" /protein_id="YP_002745952.1" /db_xref="GI:225870005" /db_xref="GeneID:7695587" /translation="MNKKETRHQLIRSLISETTIHTQQELQERLRKNGISITQATLSR DMKELNLVKVTTGNDTHYEALAISQTRWEHRLRFYMEDALVMLRVVQHQIILKTLPGL AQSFGSILDAMQISEIVATICGDDTCLIICEDNEQAKACFEILSHYTPPFFFSNK" misc_feature complement(578791..579000) /locus_tag="SEQ_0595" /inference="protein motif:PFAM:PF02863" /note="HMMPfam hit to PF02863, Arginine repressor, C-terminal domain, score 2.7e-25" misc_feature complement(579022..579231) /locus_tag="SEQ_0595" /inference="protein motif:PFAM:PF01316" /note="HMMPfam hit to PF01316, Arginine repressor, DNA binding domai, score 3.8e-24" gene 579375..580055 /locus_tag="SEQ_0596" /db_xref="GeneID:7695588" CDS 579375..580055 /locus_tag="SEQ_0596" /codon_start=1 /transl_table=11 /product="Crp family regulatory protein" /protein_id="YP_002745953.1" /db_xref="GI:225870006" /db_xref="GeneID:7695588" /translation="MIRREDYQYLRKLDDFCHFSIEQFDKIVGQMEFRQAKKDHMLFF EGDKRDRLFLVTSGYFKIEQSDRTGTFTYTDFIRHGTIFPYGGLFTDDYYHFSVVAMT DVTYFYFPTDLFEDYSLHNQQQMKHLYSKMSSLLELHELKVRNLITSSASSRVIQSLA ILLVEMGKDSDTLPFQLTTTDIAQMSGTTRETVSHVFRDLKKEGLIAVKGKYLTYLDK NYFLQYTT" misc_feature 579471..579743 /locus_tag="SEQ_0596" /inference="protein motif:PFAM:PF00027" /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 2.1e-17" misc_feature 579897..579992 /locus_tag="SEQ_0596" /inference="protein motif:PFAM:PF00325" /note="HMMPfam hit to PF00325, Bacterial regulatory proteins, crp famil, score 3.4e-07" misc_feature 579903..579968 /locus_tag="SEQ_0596" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 2209.000, SD 6.71 at aa 177-198, sequence LTTTDIAQMSGTTRETVSHVFR" gene 580324..581559 /locus_tag="SEQ_0597" /db_xref="GeneID:7695589" CDS 580324..581559 /locus_tag="SEQ_0597" /EC_number="3.5.3.6" /codon_start=1 /transl_table=11 /product="arginine deiminase" /protein_id="YP_002745954.1" /db_xref="GI:225870007" /db_xref="GeneID:7695589" /translation="MTAQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDI PFLEDAQKEHDAFAQALRDEGVEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRA TKKAIRELLMSIEDNQELIEKTMAGVQKSELPEIPAAEKGLTDLVESSYPFAIDPMPN LYFTRDPFATIGTGVSLNHMFSETRNRETIYGKYIFTHHPIYGGGKVPMVYDRNETTR IEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHL DTVFTMVDYDKFTIHPEIEGDLRVYSVTYENEELRIVEETGDLAELLAANLGVERVEL IRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSEL VRGRGGPRCMSMPFEREDI" misc_feature 580354..581547 /locus_tag="SEQ_0597" /inference="protein motif:PFAM:PF02274" /note="HMMPfam hit to PF02274, Amidinotransferase, score 3.2e-204" gene 581569..582000 /locus_tag="SEQ_0598" /db_xref="GeneID:7695590" CDS 581569..582000 /locus_tag="SEQ_0598" /codon_start=1 /transl_table=11 /product="acetyltransferase (GNAT) family protein" /protein_id="YP_002745955.1" /db_xref="GI:225870008" /db_xref="GeneID:7695590" /translation="MTRVIVGNQPFQRAASLYIRYQVFVLERQIDRQDEFDCFDDNDR VYAVLYDGDQPVSTARFLPTAKDQARLTRVATLRQYRGRGYGAQVIEALEQYAREQAY ERLVIHSEISAQSFYEGLGYQAFGEPYDEDGEPCQSVEKYL" misc_feature 581707..581937 /locus_tag="SEQ_0598" /inference="protein motif:PFAM:PF00583" /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.4e-14" gene 582015..583028 /locus_tag="SEQ_0599" /db_xref="GeneID:7695591" CDS 582015..583028 /locus_tag="SEQ_0599" /EC_number="2.1.3.3" /codon_start=1 /transl_table=11 /product="ornithine carbamoyltransferase" /protein_id="YP_002745956.1" /db_xref="GI:225870009" /db_xref="GeneID:7695591" /translation="MTQVFQGRSFLAEKDFTREEFEYLIDFAAHLKDLKKRGIPHHYL EGKNIALLFEKTSTRTRAAFTTAAIDLGAHPEYLGANDIQLGKKESTEDTAKVLGRMF DGIEFRGFSQRMVEELAEFSGVPVWNGLTDEWHPTQMLADYLTVKENFGKLEGLTLVY CGDGRNNVANSLLVAGTLLGVNVHIFSPKELFPAEDIVKLAEGYAKASGAHVLVTDNA DEAVKGADVLYTDVWVSMGEEDKFEERVKLLKPYQVNMELVKKAANDNLIFLHCLPAF HDTNTVYGKDVAEKFGVEEMEVTDEVFRSKYARHFDQAENRMHTIKAVMAATLGNLFI PKV" misc_feature 582036..582461 /locus_tag="SEQ_0599" /inference="protein motif:PFAM:PF02729" /note="HMMPfam hit to PF02729, Aspartate/ornithine carbamoyltransferase, ca, score 8.3e-70" misc_feature 582171..582194 /locus_tag="SEQ_0599" /inference="protein motif:Prosite:PS00097" /note="PS00097 Aspartate and ornithine carbamoyltransferases signature." misc_feature 582471..582998 /locus_tag="SEQ_0599" /inference="protein motif:PFAM:PF00185" /note="HMMPfam hit to PF00185, Aspartate/ornithine carbamoyltransferase, As, score 2.2e-79" gene 583190..584683 /locus_tag="SEQ_0600" /db_xref="GeneID:7695592" CDS 583190..584683 /locus_tag="SEQ_0600" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate anaerobic carrier protein" /protein_id="YP_002745957.1" /db_xref="GI:225870010" /db_xref="GeneID:7695592" /translation="MTEEKKRGFKIPSSYTVLFIIIAIMAVLTWFIPAGAYETAKDGG VISGTYQTVKSNPQGFFDILMAPVRGMLGVKGTEGAIQVSFFILMVGGFLRVVNKTGA LDTGIASVVRKNKGREKLLIAILIPLFALGGTTYGMGEETMAFYPLLIPVMIAVGFDS IVAVAIILIGSQIGCLASTINPFATGVAADAAGVSIADGMIWRIIQWVVLVGMSIWFV YSYASKIEKDPSKSLVADKAEEHKEFFQLQNSGEDLTSRQRKVLAIFTLTFVIMILSL IPWEDFDIQLFTNINTWLTTTPVLGGIIGKTMGAFGTWYFPEITMLFIMMGVLVAVVY RMSEDDFFSAFLSGAGEFLGVAIICAVARGIQVIMNGGMITATILHWGETGLAGLSSQ VFVVLAYIFYLPMSFLIPSTSGLAGATMGIMAPLGQFSNVPAHLVITAFQSASGILNM ISPTSAIVMGALALGRIDLGTWWKFIGKFIVMVMLVSVLLLVVATFF" sig_peptide 583190..583303 /locus_tag="SEQ_0600" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0600 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.328 between residues 38 and 39" misc_feature 583220..584677 /locus_tag="SEQ_0600" /inference="protein motif:PFAM:PF03606" /note="HMMPfam hit to PF03606, C4-dicarboxylate anaerobic carrier, score 2.8e-242" misc_feature join(583226..583294,583424..583483,583544..583603, 583631..583699,583712..583780,583790..583858, 583970..584026,584123..584191,584210..584278, 584321..584389,584408..584476,584519..584587, 584624..584677) /locus_tag="SEQ_0600" /inference="protein motif:TMHMM 2.0" /note="13 transmembrane helices predicted for SEQ0600 by TMHMM2.0 at aa 13-35, 79-98, 119-138, 148-170, 175-197, 201-223, 261-279, 312-334, 341-363, 378-400, 407-429, 444-466 and 479-496" gene 584700..586031 /locus_tag="SEQ_0601" /db_xref="GeneID:7695593" CDS 584700..586031 /locus_tag="SEQ_0601" /codon_start=1 /transl_table=11 /product="petidase family M20/M25/M40 protein" /protein_id="YP_002745958.1" /db_xref="GI:225870011" /db_xref="GeneID:7695593" /translation="METYIQPRHQEACVAAIKKIVSYPSVLNEGENDTPFGQAIQDVL EATLALCQDLGFNTYIDPKGYYGYAELGDQTEVLAILCHLDVVPAGDLKLWHKDPFTC IEKDGCLYGRGTQDDKGPSMMALFATKALMDAGVVFNKRIRFIFGTDEETLWRCMNRY NEVEEEATFGFAPDSSFPLTYAEKGLLQAKLVGKGSPKLNLEVGQAYNVVPARASYQG DKLEALKEELDRLGFEYVVKDDELTVYGLAQHAKDAPDGINALIRLAKALVVLEPEPV LDFLAHVVDEDGRAVNIFGPVQDEPSGGLSFNVAGLTLTKEMTEIRLDIRIPVLADKD TLVDQLSQKAQDYGLAYEEFDYLAPLYVPLDSELVTTLLEVYRKKTGDQSPAQSSGGA TFARTMANCVAFGALFPDAVQTEHQENEHIVLADAYRAMDIYAEAIYRLTR" misc_feature 584934..586019 /locus_tag="SEQ_0601" /inference="protein motif:PFAM:PF01546" /note="HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 7e-24" misc_feature 585963..586028 /locus_tag="SEQ_0601" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1077.000, SD 2.86 at aa 422-443, sequence IVLADAYRAMDIYAEAIYRLTR" gene 586049..586999 /locus_tag="SEQ_0602" /db_xref="GeneID:7695594" CDS 586049..586999 /locus_tag="SEQ_0602" /EC_number="2.7.2.2" /codon_start=1 /transl_table=11 /product="carbamate kinase" /protein_id="YP_002745959.1" /db_xref="GI:225870012" /db_xref="GeneID:7695594" /translation="MTKQKIVVALGGNAILSTDASAKAQQEALVSTSKSLVKLIKEGH EVIITHGNGPQVGNLLLQQAAADSEKNPAMPLDTCVAMTEGSIGFWLVNALDNELQAQ GITKEVAAVVTQVIVDENDPAFKNPTKPIGPFLTEEDAKKQMAESGASFKEDAGRGWR KVVPSPKPIGIKEANVIRSLVDSGVVVVSAGGGGVPVVKDPASKTLTGVEAVIDKDFA SQTLSELVDADLFIVLTGVDNVYVNFNKPDQRKLEEVTVSQMKEYIAQDQFAPGSMLP KVEAAIAFVENKSNAKAIITSLENIDNVLSANAGTQIIAG" sig_peptide 586049..586120 /locus_tag="SEQ_0602" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0602 by SignalP 2.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.713 between residues 24 and 25" misc_feature 586058..586939 /locus_tag="SEQ_0602" /inference="protein motif:PFAM:PF00696" /note="HMMPfam hit to PF00696, Amino acid kinase family, score 3.7e-97" gene 587219..588211 /locus_tag="SEQ_0603" /db_xref="GeneID:7695595" CDS 587219..588211 /locus_tag="SEQ_0603" /EC_number="6.3.1.1" /codon_start=1 /transl_table=11 /product="aspartate--ammonia ligase" /protein_id="YP_002745960.1" /db_xref="GI:225870013" /db_xref="GeneID:7695595" /translation="MKKSFIHQQEEISFVKNTFTQYLIAKLDVVEVQGPILSRVGDGM QDNLSGVENPVSVHVLNIPNATFEVVHSLAKWKRHTLARFGFNEGEGLVVNMKALRPD EDSLDQTHSVYVDQWDWEKVIPDGQRNLAYLKETVETIYKVIRLTELAVEARYDIEAV LPKKITFIHTEELVARYPDLTPKERENAITKEFDAVFLIGIGGVLPDGKPHDGRAPDY DDWTSESENGYHGLNGDILVWNEQLGTAFELFSMGIRVDEEALKRQVDITGDQERLQF DWHKSLLNGLFPLTIGGGIGQSRMAMFLLRKKHIGEVQTSVWPQEVRDTYDNIL" misc_feature 587225..587956 /locus_tag="SEQ_0603" /inference="protein motif:PFAM:PF03590" /note="HMMPfam hit to PF03590, Aspartate-ammonia ligase, score 6.1e-179" gene 588383..588922 /locus_tag="SEQ_0604" /db_xref="GeneID:7695596" CDS 588383..588922 /locus_tag="SEQ_0604" /codon_start=1 /transl_table=11 /product="methylase" /protein_id="YP_002745961.1" /db_xref="GI:225870014" /db_xref="GeneID:7695596" /translation="MRIVSGEFGGRPLKTLEGKTTRPTSDKVRGAIFNMIGPYFKGGR VLDLFAGSGGLSIEAISRGMSEAVLVERDRKAQAIIQANIKMTKASQQFTLLKMNAER ALDHLSGQFDVVFLDPPYAKETIVANIEALVEKNLLSDDVMIVCETDRSVALPEAIAW LGIWKEKQYGISKVTVYVR" misc_feature 588383..588916 /locus_tag="SEQ_0604" /inference="protein motif:PFAM:PF03602" /note="HMMPfam hit to PF03602, Conserved hypothetical protein, score 5.3e-91" misc_feature 588722..588742 /locus_tag="SEQ_0604" /inference="protein motif:Prosite:PS00092" /note="PS00092 N-6 Adenine-specific DNA methylases signature." gene 588912..589412 /gene="coaD" /locus_tag="SEQ_0605" /db_xref="GeneID:7695597" CDS 588912..589412 /gene="coaD" /locus_tag="SEQ_0605" /EC_number="2.7.7.3" /codon_start=1 /transl_table=11 /product="phosphopantetheine adenylyltransferase" /protein_id="YP_002745962.1" /db_xref="GI:225870015" /db_xref="GeneID:7695597" /translation="MSGKIGLYTGSFDPVTNGHMDMIKRASHLFEHVYVGIFNNPNKQ SFFTFELRAQMLSEAVCALPNVTVVSAEHGLAVDLARELSVTHLIRGLRNTADFDYEI GLEYFNHRLAPDIETIYLMATHDLQPVSSSRIRELIAFRAPITGLVPQAVINQVEKMN ENNKKN" misc_feature 588930..589322 /gene="coaD" /locus_tag="SEQ_0605" /inference="protein motif:PFAM:PF01467" /note="HMMPfam hit to PF01467, Cytidylyltransferase, score 5.3e-25" misc_feature 588951..589379 /gene="coaD" /locus_tag="SEQ_0605" /inference="protein motif:PFAM:PF08218" /note="HMMPfam hit to PF08218, Citrate lyase ligase C-terminal domain, score 0.0018" gene 589390..590427 /locus_tag="SEQ_0606" /db_xref="GeneID:7695598" CDS 589390..590427 /locus_tag="SEQ_0606" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002745963.1" /db_xref="GI:225870016" /db_xref="GeneID:7695598" /translation="MKTIKKIKWWLIGFVALLFLLLTLFFPLPYYIEMPGGAYDIRSV LTVNGKEDKEKGAYQFVVVSLSRATLAKLLYAWLTPFTEISTMEDTTGGYSDADYLRI NRFYMETSQNSAVYQALTLAGKEVSFDYKGVYVLDVSKDSSFKGVLHLADTVTGVNGK TFTTSADLIDYVSHLTLGDEVQVQFTTAGESKTEKGKIIKLKNGKNGIGITLTDHTQV ISGDEVDFSTGGVGGPSAGLMFTLDIYDQINHEDLRKGRVIAGTGTIGKDGKVGDIGG AGLKVAAAAAAGADIFFVPNNPVHKDVKKANPKAISNYEEAKKAAKRLKTAMKIIPVK TVQDAISYLKK" sig_peptide 589390..589500 /locus_tag="SEQ_0606" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0606 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.403 between residues 37 and 38" misc_feature 589414..589482 /locus_tag="SEQ_0606" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0606 by TMHMM2.0 at aa 9-31" gene 590989..591603 /locus_tag="SEQ_0608" /db_xref="GeneID:7695599" CDS 590989..591603 /locus_tag="SEQ_0608" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745964.1" /db_xref="GI:225870017" /db_xref="GeneID:7695599" /translation="MKRDILPEMYNYNKFPGPEFIHFDHYVKAEGIELLLLKNEKNAF NTTSFGQRFTEILLKYDYIVGDWGNEQLRLKGFYKDHHDVKKASRISRLEDYIKEFCN FGCAYFVLENPNPKDMPKEEERPSRRRKSSKANRRRNQPQHSQQAPAKDNFKKLTKDR SADKPSFTSKKRPAPNKTKGNQRRSRTSQLNHKTDHFIIRKKDN" misc_feature 591064..591321 /locus_tag="SEQ_0608" /inference="protein motif:PFAM:PF06265" /note="HMMPfam hit to PF06265, Protein of unknown function (DUF1027), score 9.8e-57" gene 591607..592689 /locus_tag="SEQ_0609" /db_xref="GeneID:7695600" CDS 591607..592689 /locus_tag="SEQ_0609" /note="23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance" /codon_start=1 /transl_table=11 /product="radical SAM superfamily protein" /protein_id="YP_002745965.1" /db_xref="GI:225870018" /db_xref="GeneID:7695600" /translation="MKPSIYGLTRDELIAWAIDNGQKAFRATQIWDWLYRKRVQSFDE MTNISKEFVAILKDSFCINPLKQRVAQESADGTVKYLFELPDGMLIETVLMRQHYGQS VCVTTQVGCNIGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDKRAQDERVSHVVVM GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS LHAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTNRRVTFEYIMLNKVNDGVEQAQE LADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGT DIDAACGQLRSNTMKKDRQKAAAART" gene complement(593122..593763) /locus_tag="SEQ_0610" /db_xref="GeneID:7695601" CDS complement(593122..593763) /locus_tag="SEQ_0610" /codon_start=1 /transl_table=11 /product="type IV leader peptidase family protein" /protein_id="YP_002745966.1" /db_xref="GI:225870019" /db_xref="GeneID:7695601" /translation="MNTIFYCYCGFLVGNLFRLILNLFSEQQAKAWVKLYIGQLHLSS LFFPMAKPTYNSKHEQKHWVMLPYLEIITSLIFGLAALCGLTWTQLYLLCFSLLLCFF DLDSQEYPLLIWLMSFLFLLPFYSINLLTVLLLLLALLSVAFPINIGAGDFLYLANLA LVVKLSSLLWIVQIASLIGILACLLLQTKKIPFIPYLTLGLIAILLFERLTGS" misc_feature complement(join(593128..593187,593206..593259, 593302..593370,593374..593442,593485..593553, 593701..593754)) /locus_tag="SEQ_0610" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0610 by TMHMM2.0 at aa 4-21, 71-93, 108-130, 132-154, 169-186 and 193-212" misc_feature complement(593212..593496) /locus_tag="SEQ_0610" /inference="protein motif:PFAM:PF01478" /note="HMMPfam hit to PF01478, Type IV leader peptidase family, score 7.6e-11" misc_feature complement(593215..593247) /locus_tag="SEQ_0610" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 593971..594501 /locus_tag="SEQ_0611" /db_xref="GeneID:7695602" CDS 593971..594501 /locus_tag="SEQ_0611" /codon_start=1 /transl_table=11 /product="Dps-like peroxide resistance protein Dpr" /protein_id="YP_002745967.1" /db_xref="GI:225870020" /db_xref="GeneID:7695602" /translation="MTNTLVENIYASVTHNISKKEASKNEKTKAVLNQAVADLSVAAS IVHQVHWYMRGPGFLYLHPKMDELLDRLNANLDEMSERLITIGGAPYSTLEEFSQHSK LDETKGSYDKSVAQHLARLVEVYLYLTSLYQVGLDITDEEGDAASNDLFTAAKADAEK TIWMLQAERGQGPAIF" misc_feature 594055..594495 /locus_tag="SEQ_0611" /inference="protein motif:PFAM:PF00210" /note="HMMPfam hit to PF00210, Ferritin-like domain, score 1.5e-33" misc_feature 594118..594168 /locus_tag="SEQ_0611" /inference="protein motif:Prosite:PS00818" /note="PS00818 Dps protein family signature 1." gene 594874..595107 /locus_tag="SEQ_0612" /db_xref="GeneID:7695603" CDS 594874..595107 /locus_tag="SEQ_0612" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745968.1" /db_xref="GI:225870021" /db_xref="GeneID:7695603" /translation="MKTLYDVQQLLKGFGIVIYMGKRLYDIEMMKIELQRLYDGGLLD KQAYLTAELILRREHRLELKREGQENESKIDRD" misc_feature 594874..595059 /locus_tag="SEQ_0612" /inference="protein motif:PFAM:PF06014" /note="HMMPfam hit to PF06014, Bacterial protein of unknown function (DUF91, score 2e-35" gene 595082..596053 /locus_tag="SEQ_0613" /db_xref="GeneID:7695604" CDS 595082..596053 /locus_tag="SEQ_0613" /EC_number="2.7.1.2" /codon_start=1 /transl_table=11 /product="glucokinase" /protein_id="YP_002745969.1" /db_xref="GI:225870022" /db_xref="GeneID:7695604" /translation="MSQKLIGIDLGGTTIKFGILTSEGDVQEKWAIETNVLEDGKHIV PDIVASLKHRLDLYGLTKDDFIGIGMGSPGAVNRTDHTVTGAFNLNWRGTQEVGSVIE RELGIPFAIDNDANVAALGERWVGAGDNNPDVVFMTLGTGVGGGIIADGNLIHGVAGA GGEIGHMIVEPLKGFACTCGSQGCLETVASATGVVKVARLLAEAYEGDSSIKAAIDNG EAVSSKDIFVAAEAGDAFANSVVEKVSYYLGLAAANISNILNPDSVVIGGGVSAAGEF LRSRVEKYFMTFTFPQVRQSTKIKIAELGNDAGIIGAASLARQFITE" misc_feature 595100..595663 /locus_tag="SEQ_0613" /inference="protein motif:PFAM:PF00480" /note="HMMPfam hit to PF00480, ROK family, score 3e-42" misc_feature 595496..595579 /locus_tag="SEQ_0613" /inference="protein motif:Prosite:PS01125" /note="PS01125 ROK family signature." misc_feature 595601..595633 /locus_tag="SEQ_0613" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 596063..596443 /locus_tag="SEQ_0614" /db_xref="GeneID:7695605" CDS 596063..596443 /locus_tag="SEQ_0614" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745970.1" /db_xref="GI:225870023" /db_xref="GeneID:7695605" /translation="MSPLTMIGWVLLAGVIAYYLWNYVSYRRMAKQVDNDTFKELMRQ GQVIDLRDPASFRARHILGARNFPAQQFTTSIKALRKDKPILLYENVRPQYRVKAVKT LRKAGYTDLYVLKAGLDYWNGKVK" misc_feature 596072..596140 /locus_tag="SEQ_0614" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0614 by TMHMM2.0 at aa 4-26" misc_feature 596162..596434 /locus_tag="SEQ_0614" /inference="protein motif:PFAM:PF00581" /note="HMMPfam hit to PF00581, Rhodanese-like domain, score 8.3e-07" gene 596839..598680 /locus_tag="SEQ_0615" /db_xref="GeneID:7695606" CDS 596839..598680 /locus_tag="SEQ_0615" /codon_start=1 /transl_table=11 /product="BipA family GTPase" /protein_id="YP_002745971.1" /db_xref="GI:225870024" /db_xref="GeneID:7695606" /translation="MTKFREDIRNVAIIAHVDHGKTTLVDELLKQSHTLDERKELQER AMDSNDLEKERGITILAKNTAVAYNDVRINIMDTPGHADFGGEVERIMKMVDGVVLVV DAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDDQ LEFPVVYASAINGTSSLSDDPADQEKTMAPIFDTIIDHIPAPVDNSAEPLQFQVSLLD YNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTTKNFRVTKLFGFFGLERKEIQEAKAG DLIAVSGMEDIFVGETITPTDCVEALPVLRIDEPTLQMTFLVNNSPFAGREGKWVTSR KVEERLLVELQTDVSLRVEPTESPDKWIVSGRGELHLSILIETMRREGYELQVSRPEV IIKEIDGVKCEPFERVQIDTPEEYQGAIIQSLSERKGDMLDMQMVGNGQTRLIFLIPA RGLIGYSTEFLSMTRGYGIMNHTFDQYLPVVAGEIGGRHRGALVSIENGKATTYSIMR IEERGTIFVNPGTEVYEGMIVGENSRDNDLGVNITTAKQMTNVRSATKDQTAVIKTPR ILTLEESLEFLNDDEYMEVTPESIRLRKQILNKAARDKANKKKKSAE" misc_feature 596854..597447 /locus_tag="SEQ_0615" /inference="protein motif:PFAM:PF00009" /note="HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 1.8e-68" misc_feature 596881..596904 /locus_tag="SEQ_0615" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 596977..597024 /locus_tag="SEQ_0615" /inference="protein motif:Prosite:PS00301" /note="PS00301 GTP-binding elongation factors signature." misc_feature 597508..597720 /locus_tag="SEQ_0615" /inference="protein motif:PFAM:PF03144" /note="HMMPfam hit to PF03144, Elongation factor Tu domain, score 3.8e-17" misc_feature 598036..598293 /locus_tag="SEQ_0615" /inference="protein motif:PFAM:PF00679" /note="HMMPfam hit to PF00679, Elongation factor G C-terminus, score 2.1e-27" gene 598762..599016 /locus_tag="SEQ_0616" /db_xref="GeneID:7695607" CDS 598762..599016 /locus_tag="SEQ_0616" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745972.1" /db_xref="GI:225870025" /db_xref="GeneID:7695607" /translation="MFYLIIAALITSYYLFMAPKSVRNTLGMIGLVGLVALLIVLAGL SFIKIMQTPKEIFVGLAMIVLGYYALRDIQKIPKKPKSKH" misc_feature join(598765..598818,598834..598902,598927..598980) /locus_tag="SEQ_0616" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0616 by TMHMM2.0 at aa 2-19, 25-47 and 56-73" gene 599150..600523 /gene="murD" /locus_tag="SEQ_0617" /db_xref="GeneID:7695608" CDS 599150..600523 /gene="murD" /locus_tag="SEQ_0617" /EC_number="6.3.2.9" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoylalanine--D-glutamate ligase" /protein_id="YP_002745973.1" /db_xref="GI:225870026" /db_xref="GeneID:7695608" /translation="MWIKMKTITEFQNKKVLILGLAKSGEAAARLLARLGAIVTVNDS KPFEENPAAQALLEEGIRVICGSHPLELLDEDFYCMVKNPGIRYDNPMVVRALDKAIS ILTEVELAYLVSEAPIIGITGSNGKTTTTTMIADVLNAGNHSALLAGNIGFPASEVAQ AATAKDILVMELSSFQLLGTEQFQPHIAVITNLVPTHLDYHGSFEDYIAAKRRIQHRM TDKDYLVLNADQELVKSLAQKTKASPVFFSTKEKVDGAYLADGYLYFKEERLMSAAEL GVPGRHNIENALATIAVAKLRGISNQVISRTLSHFRGVKHRLQLVGTLNQVTFYNDSK STNILACQKALSGFDNSKVILIAGGLDRGNEFDELVPDLVGLKKMILLGESAERMKRA ADKAGVSYLDAKDVAAATKIAFEQAKAGDIILLSPANASWDMYPSFESRGDEFLAAYD ALKGEAQ" misc_feature 599504..600031 /gene="murD" /locus_tag="SEQ_0617" /inference="protein motif:PFAM:PF08245" /note="HMMPfam hit to PF08245, Mur ligase middle domain, score 1.7e-64" misc_feature 600089..600316 /gene="murD" /locus_tag="SEQ_0617" /inference="protein motif:PFAM:PF02875" /note="HMMPfam hit to PF02875, Mur ligase family, glutamate ligase doma, score 5.3e-17" gene 600520..601602 /gene="murG" /locus_tag="SEQ_0618" /db_xref="GeneID:7695609" CDS 600520..601602 /gene="murG" /locus_tag="SEQ_0618" /EC_number="2.4.1.227" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide)pyr ophosphoryl-undecaprenol N-acetylglucosamine transferase" /protein_id="YP_002745974.1" /db_xref="GI:225870027" /db_xref="GeneID:7695609" /translation="MTKKIIFTGGGTAGHVTLNLILIPKFIKDGWEVHYIGDDKGIEH QEIKKSGLDVTFHAIATGKLRRYFSWQNLLDIFKVGFGVMQSLFIIARLRPKALFSKG GFVSVPPVIAARLLGVPAFIHESDLSMGLANRIAYRFATTMYTTFEQEQTLAKLKHVG AVTKVTGPGSRSVTSKQLEAVLEYFDPNLKTLLFIGGSAGARVFNRFITDHPELKEDF NIINISGDPSLNELSWHLYRVDYVTDLYQPLMEMADLVVTRGGSNTLFELLAMRKLQL IIPLGKEASRGDQLENAHYFTTRGYAEQLLEQELTLPHFQEKVREVFAKQSDYLSAMK SSSELQSPESFYQLLSADISSATKEN" misc_feature 600532..600954 /gene="murG" /locus_tag="SEQ_0618" /inference="protein motif:PFAM:PF03033" /note="HMMPfam hit to PF03033, Glycosyltransferase family, score 7.2e-38" misc_feature 601090..601557 /gene="murG" /locus_tag="SEQ_0618" /inference="protein motif:PFAM:PF04101" /note="HMMPfam hit to PF04101, Glycosyltransferase family, score 1.5e-24" gene 601603..602793 /locus_tag="SEQ_0619" /db_xref="GeneID:7695610" CDS 601603..602793 /locus_tag="SEQ_0619" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="YP_002745975.1" /db_xref="GI:225870028" /db_xref="GeneID:7695610" /translation="MADKTKHSEEKAALTEWQKRNIEFLNKKQQQAEKDKKLKEKLLN EKIAQAQGEAASKADQEDTDEAEEKTEVSQAGTDEGEPLPEASEQEVPSPKDKPLKVP KEKSPKQQALQKGWPVLLVSFVVLCLSIFMITPYSKVKDFSVKGNKKTSVEDLVRDSG IKSSDYWITLLASPGSYENAVLKANPWVKKVALRYGFPNHFRFDVTEFDIIAYAQVAE GFQLILENGKRVAAVKQAALPKSFLILNLEHEKEIQDVINRLTKIPSDLVKAIKSVSS ANSQTTKDLLLLEMHDGNLIRVPRSQLELKLPYYQKIKKNLDTASIVDMEVGIYTTTA EIENMPEVPASAQASQADKPAEASPEQGEEQATQEQPSPETPANPEATNPSVAQPTEQ ANQQ" misc_feature 601945..602013 /locus_tag="SEQ_0619" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0619 by TMHMM2.0 at aa 115-137" misc_feature 602011..602226 /locus_tag="SEQ_0619" /inference="protein motif:PFAM:PF08478" /note="HMMPfam hit to PF08478, POTRA domain, FtsQ-type, score 9.8e-16" misc_feature 602233..602601 /locus_tag="SEQ_0619" /inference="protein motif:PFAM:PF03799" /note="HMMPfam hit to PF03799, Cell division protein FtsQ, score 2.6e-28" gene 603005..604369 /locus_tag="SEQ_0620" /db_xref="GeneID:7695611" CDS 603005..604369 /locus_tag="SEQ_0620" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="YP_002745976.1" /db_xref="GI:225870029" /db_xref="GeneID:7695611" /translation="MARNGFFTGLDIGTSSIKVLVAEFISGEMNVIGVSNVPSTGVKD GIIIDIEAAAAAIKTAVEQAEEKAGMTIERVNVGLPANLLQIEPTQGMIPVPSESKEI KDEDVDSVVKSALTKSITPEREVISLVPEEFIVDGFQGIRDPRGMMGIRLEMRGLIYT GPSTILHNLRKTVERAGIKVENIIISPLAMAKAVLNEGEREFGATVIDMGGGQTTVAS MRAQELQYTNIYAEGGEYITKDISKVLKTSMSIAEALKYNFGQADMAEASLTDTVKVD VVGSDEPVEVTERYLSEIISARVRHILDRVKQDLERGRLLDLPGGIVLIGGGAIMPGV VEVAQEIFGTNVKLHIPNQVGIRNPMFANVISLVEYVGMMSEVDVLAQNAVSGEELLR RKPIDFTGQEAYLPDYNETRGFEPAPNYEQQVPQADYEPQEPAEPKQKISERVRGIFG SMFD" misc_feature 603023..603586 /locus_tag="SEQ_0620" /inference="protein motif:PFAM:PF02491" /note="HMMPfam hit to PF02491, Cell division protein FtsA, score 7.2e-70" misc_feature 603614..604105 /locus_tag="SEQ_0620" /inference="protein motif:PFAM:PF02491" /note="HMMPfam hit to PF02491, Cell division protein FtsA, score 4.8e-47" gene 604393..605721 /locus_tag="SEQ_0621" /db_xref="GeneID:7695612" CDS 604393..605721 /locus_tag="SEQ_0621" /codon_start=1 /transl_table=11 /product="cell division protein FtsZ" /protein_id="YP_002745977.1" /db_xref="GI:225870030" /db_xref="GeneID:7695612" /translation="MAFSFDTASIQGAIIKVIGVGGGGGNAINRMIDEGVAGVEFIAA NTDIQALSSSKAETVVQLGPKLTRGLGAGGQPEVGRKAAEESEEVLTEALTGADMVFI TAGMGGGSGTGAAPVIARIAKSLGALTVAVVTRPFGFEGNKRSNFAIEGIQELREQVD TLLIISNNNLLEIVDKKTPLLEALSEADNVLRQGVQGITDLITSPGLINLDFADVKTV MANKGNALMGIGIGSGEERIVEAARKAIYSPLLETTIDGAEDVIVNVTGGLDMTLTEA EEASEIVGQAAGQGVNIWLGTSIDDSMRDEIRVTVVATGVRQDKAEQASGFRQPRTYT QSNAQQAAGAQYASEQVRQTAQPSFDRRSSSFDFDMGETREMPKSQQAMPAHGHNHNQ GSAFGNWDLRRDNIARPAEGELDNQLNMSTFSSNDDIDDELETPPFFKNR" misc_feature 604429..605010 /locus_tag="SEQ_0621" /inference="protein motif:PFAM:PF00091" /note="HMMPfam hit to PF00091, Tubulin/FtsZ family, GTPase domain, score 4.7e-96" misc_feature 604525..604629 /locus_tag="SEQ_0621" /inference="protein motif:Prosite:PS01134" /note="PS01134 FtsZ protein signature 1." misc_feature 605014..605400 /locus_tag="SEQ_0621" /inference="protein motif:PFAM:PF03953" /note="HMMPfam hit to PF03953, Tubulin/FtsZ family, C-terminal domain, score 7.7e-24" gene 605724..606395 /locus_tag="SEQ_0622" /db_xref="GeneID:7695613" CDS 605724..606395 /locus_tag="SEQ_0622" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745978.1" /db_xref="GI:225870031" /db_xref="GeneID:7695613" /translation="MDLQKNKDIVFENIRLATQAANRPENSVSVIAVTKYVDKAVAGQ LIDMGIEHIAENRIDKFLDKYEALKDRQVTWHFIGTLQRRKVKEVINKVDYFHALDSV KLALEIEKRADHPVKCFLQVNISEEESKHGFKIAELDAAIEEISKMEKLHLVGIMTMA PIDASQQELRSIFQKANQLRKNLQSKKRKNMPFTELSMGMSNDYPIAIQEGSTFVRIG TSFFH" misc_feature 605739..606389 /locus_tag="SEQ_0622" /inference="protein motif:PFAM:PF01168" /note="HMMPfam hit to PF01168, Alanine racemase, N-terminal domain, score 1.1e-07" misc_feature 605946..605990 /locus_tag="SEQ_0622" /inference="protein motif:Prosite:PS01211" /note="PS01211 Uncharacterized protein family UPF0001 signature." gene 606408..607070 /locus_tag="SEQ_0623" /db_xref="GeneID:7695614" CDS 606408..607070 /locus_tag="SEQ_0623" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745979.1" /db_xref="GI:225870032" /db_xref="GeneID:7695614" /translation="MAIKDAFNKMISYFDTDGVSEVEEELSSKKQEEPVTKSQQTSRP NQQQQAARASQPQQPKQARPQMQAQQRPQSQSRAAYAERPYQGQSQARVSHDYNDRRA TSAPSASSRREQYQHAAHQEQTTIALKYPRKYEDAQEIVDLLIVNECVLIDFQYMLDA QARRCLDFIDGASKVLYGTLQRVGSSMYLLTPSNVSVNIEEMNIPNNGQDIGFDFDMK RR" misc_feature 606768..607007 /locus_tag="SEQ_0623" /inference="protein motif:PFAM:PF04472" /note="HMMPfam hit to PF04472, Protein of unknown function (DUF552), score 2.5e-45" gene 607072..607332 /locus_tag="SEQ_0624" /db_xref="GeneID:7695615" CDS 607072..607332 /locus_tag="SEQ_0624" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002745980.1" /db_xref="GI:225870033" /db_xref="GeneID:7695615" /translation="MMIFILLILLKLIKVYSYLLLVYALLSWFPGAYDSWLGRLVSDI VEPILKPFRSLNLQFAGLDFTIYLVMIGLNVLSEILIRVLIS" misc_feature 607075..607320 /locus_tag="SEQ_0624" /inference="protein motif:PFAM:PF02325" /note="HMMPfam hit to PF02325, YGGT family, score 1.4e-26" misc_feature join(607090..607158,607246..607314) /locus_tag="SEQ_0624" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0624 by TMHMM2.0 at aa 7-29 and 59-81" gene 607329..608123 /locus_tag="SEQ_0625" /db_xref="GeneID:7695616" CDS 607329..608123 /locus_tag="SEQ_0625" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745981.1" /db_xref="GI:225870034" /db_xref="GeneID:7695616" /translation="MTVQTMLYQHFQPDEHPFIERMLDLIARVEANYLLEVTDFLNPR EVTILKGLVAATNLQCFSSTDYYPSEYGRVIVAPDYYCLDKADFDLALIEVTYNAKFN QLTHAQILGTLINELGIKRALLGDIFVEIGHAQVMINRQLLSYCLGTIAKIAKARVKL KEIDLDQLLNLTANQQVLTDIMVSSLRVDRLIATVLKQSRNQAIRLVEAGKVKVNYQL VTKASQPVAVGDLISIRGYGRFSILTDNGFTKNGKYKLTLSKMMRK" misc_feature 607884..608024 /locus_tag="SEQ_0625" /inference="protein motif:PFAM:PF01479" /note="HMMPfam hit to PF01479, S4 domain, score 1.4e-10" gene 608133..608888 /locus_tag="SEQ_0626" /db_xref="GeneID:7695617" CDS 608133..608888 /locus_tag="SEQ_0626" /codon_start=1 /transl_table=11 /product="cell-division protein DivIVA" /protein_id="YP_002745982.1" /db_xref="GI:225870035" /db_xref="GeneID:7695617" /translation="MALTALEIKDKTFKTKFRGYSEEEVNEFLEIVVDDYEALVRKNR DNEAKIRELEEKLSYFDEMKESLSQSVILAQETAEKVKSSANAEATNLVSKATYDAQH LLDESKAKANQLLRDATDEAKRVAIETEELKRQTRVFHQRLVSAIESQLSLSNSPEWD ELLQPTAVYLQNSDAAFKEVVKTVLNEDIPEADDSNSFDATRQFTPEELEELQRRVEE SNKELEAYQVQREEQASEPEVNLSETQTFKLNI" misc_feature 608133..608885 /locus_tag="SEQ_0626" /inference="protein motif:PFAM:PF05103" /note="HMMPfam hit to PF05103, DivIVA protein, score 8.8e-112" gene 608894..609130 /locus_tag="SEQ__m0020" /db_xref="GeneID:7695618" misc_RNA 608894..609130 /locus_tag="SEQ__m0020" /db_xref="GeneID:7695618" gene 609159..611957 /gene="ileS" /locus_tag="SEQ_0627" /db_xref="GeneID:7696434" CDS 609159..611957 /gene="ileS" /locus_tag="SEQ_0627" /EC_number="6.1.1.5" /codon_start=1 /transl_table=11 /product="isoleucyl-tRNA synthetase" /protein_id="YP_002745983.1" /db_xref="GI:225870036" /db_xref="GeneID:7696434" /translation="MKLKETLNLGKTAFPMRAGLPNKEPQWQKAWDEAEIYKKRQALN EGKPAFHLHDGPPYANGNIHVGHALNKISKDIIVRAKSMSGYQAPFVPGWDTHGLPIE QVLAKQGVKRKEMDLADYLDMCRQYALSQVDKQRDDFKRLGVSADWDNPYVTLDPSFE ADQIRVFGAMADKGYIYRGAKPVYWSWSSESALAEAEIEYHDIDSTSLYYANRVKDGK GILDTDTYVVVWTTTPFTVTASRGLTVGPDMDYVVVRPAGSDRNYVVAEGLLDSLAAK FAWESFEILANHKGSDLEYIVTEHPWDSEVDELVILGDHVTLDSGTGIVHTAPGFGED DYNVGMTYGLEVAVTVDERGLMMENAGPDFHGQFYGKVTPIVIEKLGDLLLAQEVINH SYPFDWRTKKPIIWRAVPQWFASVSDFRQEILDEIDKTTFHPTWGKTRLYNMIRDRGD WVISRQRAWGVPLPIFYAEDGTAIMTKEVTDHVADLFQEHGSIIWWQKEAKELLPEGF THPGSPNGVFTKETDIMDVWFDSGSSWNGVMNARDHLAYPADLYLEGSDQYRGWFNSS LITSVAVNGHAPYKAILSQGFVLDGKGEKMSKSKGNIISPNDVAKQYGADILRLWVAS VDTDNDVRVSMDILGQVSETYRKIRNTLRFLLANTSDFNPHTDKVAYAELAAVDKYMT IKFNKLVGAINTAYERYDFMTIYKAVVNFVTVDLSAFYLDFAKDVVYIEAANSLARRR MQTVFYDILVNITKLLTPILPHTAEEIWSYLEHEPEDFVQLSELPQAQTFDNQDTILE EWEAFMTLRAQAQKALEEARHDKIIGKSLEAHLTIYASPEVKTLLTALDSDIALLLIV SQLTISEEPAPENAVSFDDVAFTVARAQGEVCERSRRIDPTTRMRSYNAFVCDHSAKI IEENFPEAVAEGFDSAAN" misc_feature 609234..611060 /gene="ileS" /locus_tag="SEQ_0627" /inference="protein motif:PFAM:PF00133" /note="HMMPfam hit to PF00133, tRNA synthetases class I (I, L, M and V), score 8.8e-274" misc_feature 609327..609362 /gene="ileS" /locus_tag="SEQ_0627" /inference="protein motif:Prosite:PS00178" /note="PS00178 Aminoacyl-transfer RNA synthetases class-I signature." misc_feature 611190..611660 /gene="ileS" /locus_tag="SEQ_0627" /inference="protein motif:PFAM:PF08264" /note="HMMPfam hit to PF08264, Anticodon-binding domain, score 1.9e-54" misc_feature 611811..611900 /gene="ileS" /locus_tag="SEQ_0627" /inference="protein motif:PFAM:PF06827" /note="HMMPfam hit to PF06827, Zinc finger found in FPG and IleRS, score 8.9e-05" gene complement(612435..612737) /locus_tag="SEQ_0628" /db_xref="GeneID:7695619" CDS complement(612435..612737) /locus_tag="SEQ_0628" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745984.1" /db_xref="GI:225870037" /db_xref="GeneID:7695619" /translation="MRLINTTSSHPELVRNQLQNTDAHLVEVYSAGNTDVIFTQAPKH YELLISNKYRAIKEDELEVIREFFLKRKIDQSIVIPGHSKTLHTNNLIEISFQTSV" gene complement(612799..613248) /locus_tag="SEQ_0629" /db_xref="GeneID:7695620" CDS complement(612799..613248) /locus_tag="SEQ_0629" /codon_start=1 /transl_table=11 /product="Mut/NUDIX family protein" /protein_id="YP_002745985.1" /db_xref="GI:225870038" /db_xref="GeneID:7695620" /translation="MTVPIFGDKIDDQHYTARYGVYAVIPNSAKTEIILVQAPNGAWF LPGGEIEAGESQLQALERELVEELGFAADIGYYYGQADEYFYSRHRDTYYYNPAYLYE VTSFQAISKPLEDFNHLAWFLPIADAITVLKRDSHRWGVEEWQKKHH" misc_feature complement(612844..613200) /locus_tag="SEQ_0629" /inference="protein motif:PFAM:PF00293" /note="HMMPfam hit to PF00293, NUDIX domain, score 7.9e-12" misc_feature complement(613048..613107) /locus_tag="SEQ_0629" /inference="protein motif:Prosite:PS00893" /note="PS00893 mutT domain signature." gene complement(613408..615660) /locus_tag="SEQ_0630" /db_xref="GeneID:7695621" CDS complement(613408..615660) /locus_tag="SEQ_0630" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease ATP-binding subunit" /protein_id="YP_002745986.1" /db_xref="GI:225870039" /db_xref="GeneID:7695621" /translation="MLCQNCNLNESTIHLYTSINGKQRQIDLCQNCYQIMKTDPKNPI LGGYNGNQKAQQPSQNPFFDDFFGDLNNFRAFGQLPNTPPTQSGGHNGGGHNGYRPNH TQPAQEANKGLLEEFGINITEMAKRGDIDPVIGRDDEIIRVIEILNRRTKNNPVLIGE PGVGKTAVVEGLAQKIVDGDVPQKLQSKQVIRLDVVSLVQGTGIRGQFEERMQKLMEE IRKRHDVILFIDEIHEIVGAGAVGDGSMDAGNILKPALARGELQLVGATTLNEYRIIE KDAALERRMQPVKVDEPSVEETITILKGIQPKYEDYHHVKYSQSAIEAAANLSNRYIQ DRFLPDKAIDLLDEAGSKMNLTLNFVDPKDIDKRLIEAENLKTQATRDEDYERAAYFR DQIAKYKEMQAQKLDEQDIPIITDKTIEAIVEQKTNIPVGDLKEKEQSQLVNLAADLK KHVIGQDDAVDKIAKAIRRNRVGLGVPNRPIGSFLFVGPTGVGKTELSKQLAIELFGS ADNMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEQVRRNPYSLILLDEIEKAH PDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKTEASVGFGAAREGRTNS VLGELSHFFSPEFMNRFDGIIEFQPLSKDNLLHIVHLMLDDVNHRLAHNNIRLDVTQK VKEKLVELGYDPKMGARPLRRTIQDYIEDAITDFYLEHPAEKDMRAVLTSNGHIIIKP VVKSQAKQAD" misc_feature complement(613714..614214) /locus_tag="SEQ_0630" /inference="protein motif:PFAM:PF07728" /note="HMMPfam hit to PF07728, ATPase family associated with various cellul, score 0.00022" misc_feature complement(613729..614226) /locus_tag="SEQ_0630" /inference="protein motif:PFAM:PF07724" /note="HMMPfam hit to PF07724, ATPase family associated with various cellul, score 1.7e-99" misc_feature complement(614065..614121) /locus_tag="SEQ_0630" /inference="protein motif:Prosite:PS00871" /note="PS00871 Chaperonins clpA/B signature 2." misc_feature complement(614176..614199) /locus_tag="SEQ_0630" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature complement(614458..614565) /locus_tag="SEQ_0630" /inference="protein motif:PFAM:PF02151" /note="HMMPfam hit to PF02151, UvrB/uvrC motif, score 0.00014" misc_feature complement(614620..615201) /locus_tag="SEQ_0630" /inference="protein motif:PFAM:PF00004" /note="HMMPfam hit to PF00004, ATPase family associated with various cellul, score 3.3e-10" misc_feature complement(614782..615201) /locus_tag="SEQ_0630" /inference="protein motif:PFAM:PF07728" /note="HMMPfam hit to PF07728, ATPase family associated with various cellul, score 0.00072" misc_feature complement(614884..614922) /locus_tag="SEQ_0630" /inference="protein motif:Prosite:PS00870" /note="PS00870 Chaperonins clpA/B signature 1." misc_feature complement(615163..615186) /locus_tag="SEQ_0630" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 615942..616172 /locus_tag="SEQ_0631" /db_xref="GeneID:7695622" CDS 615942..616172 /locus_tag="SEQ_0631" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002745987.1" /db_xref="GI:225870040" /db_xref="GeneID:7695622" /translation="MESHLVRIINRLELMVTDGGNLKRNFERDGVVVAEVAFVNDPEN GPVFILRDIEARESYSFDSIDLIAMEIYDLLY" gene complement(616654..617592) /locus_tag="SEQ_0633" /db_xref="GeneID:7695623" CDS complement(616654..617592) /locus_tag="SEQ_0633" /codon_start=1 /transl_table=11 /product="collagen-like surface-anchored protein SclE" /protein_id="YP_002745988.1" /db_xref="GI:225870041" /db_xref="GeneID:7695623" /translation="MKKTIRKYSVCSAAIALATMASLGTAGNARAEDYTRLESYPDPA ELIRDGLGDGEVRVYLHTLRQFMQTYLQNLELQAKKGGPQGPVGPAGPRGERGEQGPV GPMGPRGDKGETGETGPKGEQGPAGPKGDRGERGEKGEQGQRGEKGEQGQRGEKGEQG QRGEKGEQGQRGEKGEQGQRGEKGEQGQRGEKGEQGQRGEKGEQGQRGEKGEQGQRGE KGEQGQRGEKGEQKPKGDQGKDTKPSAPKAPEKTPAPKAPEKSAQPKAPAPKSAPAAQ KSTLPATGETNHPFFTLAALSVITSAGVLNLKKKKS" sig_peptide complement(616654..616746) /locus_tag="SEQ_0633" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0633 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 between residues 31 and 32" misc_feature complement(616660..616779) /locus_tag="SEQ_0633" /inference="protein motif:PFAM:PF00746" /note="HMMPfam hit to PF00746, Gram positive anchor, score 1.7e-10" misc_feature complement(616738..616755) /locus_tag="SEQ_0633" /inference="protein motif:Prosite:PS00343" /note="PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide." misc_feature complement(616999..617178) /locus_tag="SEQ_0633" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 3.6e-16" misc_feature complement(617179..617355) /locus_tag="SEQ_0633" /inference="protein motif:PFAM:PF01391" /note="HMMPfam hit to PF01391, Collagen triple helix repeat (20 copi, score 4.5e-10" gene 617934..618617 /locus_tag="SEQ_0634" /db_xref="GeneID:7695624" CDS 617934..618617 /locus_tag="SEQ_0634" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter permease protein" /protein_id="YP_002745989.1" /db_xref="GI:225870042" /db_xref="GeneID:7695624" /translation="MDFTFLPKYWAYFNYGVLVTMMISACVVFFGTIIGLLVTLIKRS HIKPLSWLVSLYVWIFRGTPMVVQIMIAFAWLHFNDLPIVGFGVLDLDFSRLLPGIII ISLNSGAYISEIVRAGIEAVPKGQLEAAYSLGIRPKNAMRYVILPQAFKNILPALGNE LITIIKDSALLQTIGVMELWNGAQSVVTATYLPITPLLFAAFYYLMITTILSQLLGCL ERKLAQGGR" misc_feature 617970..618605 /locus_tag="SEQ_0634" /inference="protein motif:PFAM:PF00528" /note="HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 6.7e-26" misc_feature join(617976..618044,618081..618149,618519..618587) /locus_tag="SEQ_0634" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0634 by TMHMM2.0 at aa 15-37, 50-72 and 196-218" misc_feature 617979..618011 /locus_tag="SEQ_0634" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 618288..618374 /locus_tag="SEQ_0634" /inference="protein motif:Prosite:PS00402" /note="PS00402 Binding-protein-dependent transport systems inner membrane comp. sign." gene 618619..619356 /locus_tag="SEQ_0635" /db_xref="GeneID:7695625" CDS 618619..619356 /locus_tag="SEQ_0635" /codon_start=1 /transl_table=11 /product="glutamine transporter, ATP-binding protein 3" /protein_id="YP_002745990.1" /db_xref="GI:225870043" /db_xref="GeneID:7695625" /translation="MTETVISIRQLHKSFGKHEVLKGIDLTINQGEVVVIIGPSGSGK STLLRTMNLLEVPTKGHISFEGVDITDKANDIFKMREKMGMVFQQFNLFPNMTVLENI TLSPIKTKGMSRAGAEQRAYELLERVGLRDKAAAYPASLSGGQQQRIAIARGLAMDPD VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAKEVADRVIFMDGGLV IEEGSPVQVFEAPKEERTKDFLSKVLS" misc_feature 618709..619266 /locus_tag="SEQ_0635" /inference="protein motif:PFAM:PF00005" /note="HMMPfam hit to PF00005, ABC transporter, score 5.8e-69" misc_feature 618730..618753 /locus_tag="SEQ_0635" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 619039..619083 /locus_tag="SEQ_0635" /inference="protein motif:Prosite:PS00211" /note="PS00211 ABC transporters family signature." gene 619800..621494 /locus_tag="SEQ_0637" /db_xref="GeneID:7695626" CDS 619800..621494 /locus_tag="SEQ_0637" /codon_start=1 /transl_table=11 /product="phosphoglucomutase" /protein_id="YP_002745991.1" /db_xref="GI:225870044" /db_xref="GeneID:7695626" /translation="MDYKAVYQEWLHNDFFNEEIKADLEAIKHDEAEIQDRFYKVLEF GTAGLRGKLGAGTNRMNIYMVGKAAQALANTIIDHGPEAVSRGIAISYDVRYKSKEFA ELTCSIMAANGIKSYIYKGIRPTPMCSYAIRALNCISGVMITASHNPQAYNGYKAYWE EGSQILDDIANQIAVHMDAIERFEDVKQIPFEEALASGLTSYIDDSIEEAYKKEVLGL TINDTDIDKSVRVVYTPLNGVGNLPVREVLKRRGFDHVFVVPEQEMPDPDFTTVGYPN PEVPKAFAYSERLGQEVGAAILIATDPDCDRVALEVRAADGSYVFLNGNKIGALLSYY IFSQRHARHNLPDNPVLVKSIVTGDLSKAIAAKYDVETVETLTGFKNICGKANDYDIT KEKTYVFGYEESIGFCYGTFVRDKDAVSASMMVVEMAAYYKQRGQSLLDVLQDIYKEF GYYNERQVALELEGVEGQKRIARIMEDFRNEPIEHAGAMSLKTIVDFKDGYLDFPKQN CLKYYFDDGSWYALRPSGTEPKIKLYIYTIGETEADSIAKLDAIESACQAKMDSVS" misc_feature 619920..620351 /locus_tag="SEQ_0637" /inference="protein motif:PFAM:PF02878" /note="HMMPfam hit to PF02878, Phosphoglucomutase/phosphomannomutase, al, score 1.1e-56" misc_feature 620217..620261 /locus_tag="SEQ_0637" /inference="protein motif:Prosite:PS00710" /note="PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature." misc_feature 620424..620762 /locus_tag="SEQ_0637" /inference="protein motif:PFAM:PF02879" /note="HMMPfam hit to PF02879, Phosphoglucomutase/phosphomannomutase, al, score 0.017" misc_feature 620766..621149 /locus_tag="SEQ_0637" /inference="protein motif:PFAM:PF02880" /note="HMMPfam hit to PF02880, Phosphoglucomutase/phosphomannomutase, al, score 0.012" misc_feature 621261..621461 /locus_tag="SEQ_0637" /inference="protein motif:PFAM:PF00408" /note="HMMPfam hit to PF00408, Phosphoglucomutase/phosphomannomutase, C-, score 0.029" gene 621606..622460 /locus_tag="SEQ_0638" /db_xref="GeneID:7695627" CDS 621606..622460 /locus_tag="SEQ_0638" /EC_number="1.5.1.5" /codon_start=1 /transl_table=11 /product="FolD bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase]" /protein_id="YP_002745992.1" /db_xref="GI:225870045" /db_xref="GeneID:7695627" /translation="MVQIIDGKALAQKMQAALAKKVESLKAEKGIVPGLVVILVGDNP ASQVYVRNKERAALAAGFKSETVRLSDSVCQEELIELIEQYNQDDTIHGILVQLPLPH HINDKSIILAIDPKKDVDGFHPMNTGHLWSGRPNMVPCTPAGIMEMFHDYGIELEGKN AVIVGRSNIVGKPMAQLLLDKNATVTLTHSRTRRLADICRRADILIVAIGQGHFITKE FVKEGAVVIDVGMNRDVNGRLIGDVAFDEVSELASMITPVPGGVGPMTITMLLEQTYQ AALRRVSQ" misc_feature 621612..621965 /locus_tag="SEQ_0638" /inference="protein motif:PFAM:PF00763" /note="HMMPfam hit to PF00763, Tetrahydrofolate dehydrogenase/cyclohyd, score 1.2e-66" misc_feature 621828..621905 /locus_tag="SEQ_0638" /inference="protein motif:Prosite:PS00766" /note="PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1." misc_feature 621972..622451 /locus_tag="SEQ_0638" /inference="protein motif:PFAM:PF02882" /note="HMMPfam hit to PF02882, Tetrahydrofolate dehydrogenase/cyclohyd, score 9.8e-110" misc_feature 622380..622406 /locus_tag="SEQ_0638" /inference="protein motif:Prosite:PS00767" /note="PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2." gene 622457..623311 /locus_tag="SEQ_0639" /db_xref="GeneID:7695628" CDS 622457..623311 /locus_tag="SEQ_0639" /codon_start=1 /transl_table=11 /product="carbohydrate kinase" /protein_id="YP_002745993.1" /db_xref="GI:225870046" /db_xref="GeneID:7695628" /translation="MIIDQSFVARVVVPRQADSHKGSYGRVLLVGGLYPYGGAIIMVA LACVHSGAGLVTVATDRETIAALHSHLPEAMAIAVDDEELLLSQLGMADLILIGPGLS ENSRAARLFELVLAHVADHQVLVIDGSALRLLAKRAADVKQLRCPLVLTPHQKEWEAL SGLAIDQQYDAANQAALKHFPRATILVAKSSATKIYHGNQIYRLRVGGPYQATGGMGD TLAGMIAGIAVQFPESSLVAKVACATYLHSAIADELAKTAYVVLPTAISYELPRWLKA ISTGQKLG" misc_feature 622526..622594 /locus_tag="SEQ_0639" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0639 by TMHMM2.0 at aa 24-46" misc_feature 622535..623272 /locus_tag="SEQ_0639" /inference="protein motif:PFAM:PF01256" /note="HMMPfam hit to PF01256, Carbohydrate kinase, score 2.3e-66" misc_feature 622565..622597 /locus_tag="SEQ_0639" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 623096..623128 /locus_tag="SEQ_0639" /inference="protein motif:Prosite:PS01050" /note="PS01050 Uncharacterized protein family UPF0031 signature 2." gene 623580..624935 /gene="xseA" /locus_tag="SEQ_0640" /db_xref="GeneID:7695629" CDS 623580..624935 /gene="xseA" /locus_tag="SEQ_0640" /EC_number="3.1.11.6" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII large subunit" /protein_id="YP_002745994.1" /db_xref="GI:225870047" /db_xref="GeneID:7695629" /translation="MKGKLMADYLSVTQLTKYLKLKFDRDPYLERVYLTGQVSNFRKR PNHQYFSLKDEGAVIQATMWAGAYKKLGFDLEEGMKLNVVGRIQLYEPNGSYSMIIEK AEPDGIGALALQFEQLRQKLAGEGFFDERHKQALPQFVTKVGIVTSPSGAVIRDIITT ISRRFPGVSILLFPTKVQGEGAAQEVAANITKANQREDLDLLIVGRGGGSIEDLWAFN EEIVVQAIFESRLPVISSVGHETDTTLADFVADRRAATPTAAAELATPITKTDIVSWI AEQQSRSYQACLRYIRQGQERVDKLSYSVIFRQPERLYDAYSQRLDRLTTSLMTTFKE TLSGAKQEHLILEHRLASVNVQARLERYQDRLATAHRLLIANMTNQYDSKLAGFERAQ AALLSLDTSRIIARGYALLKKDGVVAACVKDIKKGDHLSIIMRDGQLEVEVEDVNEKN I" misc_feature 623673..623897 /gene="xseA" /locus_tag="SEQ_0640" /inference="protein motif:PFAM:PF01336" /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 2.3e-14" misc_feature 624174..624728 /gene="xseA" /locus_tag="SEQ_0640" /inference="protein motif:PFAM:PF02601" /note="HMMPfam hit to PF02601, Exonuclease VII, large subunit, score 8.5e-42" gene 624913..625128 /locus_tag="SEQ_0641" /db_xref="GeneID:7695630" CDS 624913..625128 /locus_tag="SEQ_0641" /EC_number="3.1.11.6" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII small subunit" /protein_id="YP_002745995.1" /db_xref="GI:225870048" /db_xref="GeneID:7695630" /translation="MSTKKIFEERLQELEAIVTRLENGDVPLEEAISEFQKGMVLSKD LQKTLQAAEKTLVKVMQADGTELEMDA" misc_feature 624925..625116 /locus_tag="SEQ_0641" /inference="protein motif:PFAM:PF02609" /note="HMMPfam hit to PF02609, Exonuclease VII small subunit, score 1.1e-28" gene 625128..625997 /locus_tag="SEQ_0642" /db_xref="GeneID:7695631" CDS 625128..625997 /locus_tag="SEQ_0642" /EC_number="2.5.1.10" /codon_start=1 /transl_table=11 /product="geranyltranstransferase" /protein_id="YP_002745996.1" /db_xref="GI:225870049" /db_xref="GeneID:7695631" /translation="MDKLTRINATIHQYYDRQSTVSADLEEAILYSVDGGGKRLRPLM LLELLEGFGLALTDAHYAVAAAVEMIHTGSLIHDDLPAMDNDDYRRGRLTSHKQFNEA TAILAGDSLFLDPFALIAGADLPADLLVQLIQQFSLASGTFGMVGGQLLDMKGEHQLL DIQELSDIHANKTGKLLTLPFVAAGIIAEQSADVLSCLWEAGRLVGQAFQIRDDILDL TASFADLGKTPQKDLAAAKSTYPSLLGLERSRAILEESLSQALAIFSRLEREEGFESQ AIIKRIEGLRLNG" misc_feature 625197..625976 /locus_tag="SEQ_0642" /inference="protein motif:PFAM:PF00348" /note="HMMPfam hit to PF00348, Polyprenyl synthetase, score 1.9e-61" misc_feature 625350..625400 /locus_tag="SEQ_0642" /inference="protein motif:Prosite:PS00723" /note="PS00723 Polyprenyl synthetases signature 1." misc_feature 625740..625778 /locus_tag="SEQ_0642" /inference="protein motif:Prosite:PS00444" /note="PS00444 Polyprenyl synthetases signature 2." gene 625990..626817 /locus_tag="SEQ_0643" /db_xref="GeneID:7695632" CDS 625990..626817 /locus_tag="SEQ_0643" /codon_start=1 /transl_table=11 /product="hemolysin-like protein" /protein_id="YP_002745997.1" /db_xref="GI:225870050" /db_xref="GeneID:7695632" /translation="MAKERVDVLAYRQGLFETREQAKRGVMAGLVISAISGLRFDKPG EKIDEGIELRLKGEKLKYVSRGGLKLEKALQVFGISVQDKVTIDIGASTGGFTDVMLQ AGARLVYAVDVGTNQLVWKLRQDSRVRSMEQYNFRYAKLADFSEGQPAFASIDVSFIS LSLILPTLHCILQEGAEAVALIKPQFEAGREQIGKKGIVKDRLIHEKVIKQVADTALN CGFIVKGLDFSPIQGGHGNIEFLAHLVKGKGSKAIDDQLIQSVVSSAHKEFKQHEKE" misc_feature 625999..626148 /locus_tag="SEQ_0643" /inference="protein motif:PFAM:PF01479" /note="HMMPfam hit to PF01479, S4 domain, score 0.013" misc_feature 626173..626679 /locus_tag="SEQ_0643" /inference="protein motif:PFAM:PF01728" /note="HMMPfam hit to PF01728, FtsJ-like methyltransferase, score 0.00016" gene 626804..627274 /locus_tag="SEQ_0644" /db_xref="GeneID:7695633" CDS 626804..627274 /locus_tag="SEQ_0644" /codon_start=1 /transl_table=11 /product="repressor protein" /protein_id="YP_002745998.1" /db_xref="GI:225870051" /db_xref="GeneID:7695633" /translation="MKKSERLDLIKKMVLSHEIETQHELLKLLADYGLELTQATISRD MNEIGIVKIPSGTGRYVYGLSQDSGKRVVQRPASIKKTILEMSEKTAGLEQHIHLNVV PGNSKLIKRYLMTDFSGQLFSLIADDDSLLLIAKSEADADHIRQELSLWMQGLV" misc_feature 626804..627013 /locus_tag="SEQ_0644" /inference="protein motif:PFAM:PF01316" /note="HMMPfam hit to PF01316, Arginine repressor, DNA binding domai, score 1.9e-24" misc_feature 627056..627256 /locus_tag="SEQ_0644" /inference="protein motif:PFAM:PF02863" /note="HMMPfam hit to PF02863, Arginine repressor, C-terminal domain, score 5.2e-19" gene 627292..628953 /locus_tag="SEQ_0645" /db_xref="GeneID:7695634" CDS 627292..628953 /locus_tag="SEQ_0645" /codon_start=1 /transl_table=11 /product="DNA repair protein" /protein_id="YP_002745999.1" /db_xref="GI:225870052" /db_xref="GeneID:7695634" /translation="MLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNM LLGARASTEVIRHGADKAEIEGFFSVDANPHLAAVLAESGISMEEELILRRDIFANGR SVSRINGQMVTVSTLKKLGQFLVDIHGQHDQEELMRPQLHQHILDSFGDEAFDQLKQS YQQIFDRYKALRRQALEKQKNEKEHQARLDLLAFQIGEIEAADLVRGEDDLLNQERQR LLNHKKIADTLTSAYLSLDNEDFSSLSQVRSSMNELLSIEDLAPEYQLISAGVSEAYY ILEEVTKQLSDTIDQLDFDAGRLQDIELRLDSINSLTRKYGGGVNDVLDYYANITKEY QLLSGDDRSSDELERELKVLEKQLVMTASQLSDKRHALALELEADIKAELRELYMEKA DFKVHFTRSKFNREGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISKKE DKTSIVFDEVDTGVSGRVAQAIAKKIYKIGSYGQVLAISHLPQVIAIADNQYFISKES KEESTVSKAKLLTQEERIEEIAKMIAGADVTETARNQARELLGKD" misc_feature 627292..628830 /locus_tag="SEQ_0645" /inference="protein motif:PFAM:PF02463" /note="HMMPfam hit to PF02463, RecF/RecN/SMC N terminal domain, score 2.8e-11" misc_feature 627376..627399 /locus_tag="SEQ_0645" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 629174..630046 /locus_tag="SEQ_0646" /db_xref="GeneID:7695635" CDS 629174..630046 /locus_tag="SEQ_0646" /codon_start=1 /transl_table=11 /product="cell surface-anchored protein" /protein_id="YP_002746000.1" /db_xref="GI:225870053" /db_xref="GeneID:7695635" /translation="MLKKRMGLASLLVLMTFVYQCCSVTAEQYSDTEVEVLQISEEKS QIMENQEALKDLTTSSDQLKKEALKPKEAATNKSKQEASTVYLAEDDPVTIDSSDEES NQDIIADSVPDLVIKGDQVDVSEVMVSVKEDSSKVAKQRTDAAQRYSIAKHQLTQKLE AFNAATDQLLTMIAKKSDLTGQYYVVGHSLGEMLAAQNEKKLAEQLVMQQKHKKGLGS SVTILDELGRVISDISGHKGMLPFNRKISFKVHQVRYDLPLTGDRTVLPAQLAGLLLL LIGLMLPKVANKKS" sig_peptide 629174..629251 /locus_tag="SEQ_0646" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0646 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.506 between residues 26 and 27" misc_feature 629942..629959 /locus_tag="SEQ_0646" /inference="protein motif:Prosite:PS00343" /note="PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide." gene 630184..631035 /locus_tag="SEQ_0647" /db_xref="GeneID:7695636" CDS 630184..631035 /locus_tag="SEQ_0647" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002746001.1" /db_xref="GI:225870054" /db_xref="GeneID:7695636" /translation="MELKMGTIKIVADSSMTIEPELIKSLDITVVPLSVMIDSKLYSD NELKEEGQFLQLMRASKSLPKTSQPPVGLFADIYERLVKEGATAIVAIHLSPALSGTI EASRQGAEIAAAPVTVLDSGFTDQALKFQVVEAARLAQAGASLEEILEAVEDIKRKTE LYIGVSALEHLVKGGRIGRVTGLLSSLLNIRVVMEMKNDTLQTLVKGRGNKTFTKWLD SYLAENSQRQIAEVAISYAGQRDFADSLKKTIATVFDGPITVLETGSIIQTHTGEGAF AVMVRYE" misc_feature 630412..631032 /locus_tag="SEQ_0647" /inference="protein motif:PFAM:PF02645" /note="HMMPfam hit to PF02645, Uncharacterized protein, DegV family COG1307, score 3.6e-69" gene 631028..631870 /locus_tag="SEQ_0648" /db_xref="GeneID:7695637" CDS 631028..631870 /locus_tag="SEQ_0648" /codon_start=1 /transl_table=11 /product="GDSL-like lipase/acylhydrolase protein" /protein_id="YP_002746002.1" /db_xref="GI:225870055" /db_xref="GeneID:7695637" /translation="MNKRGFLGGLIFFFSVFALSFVILAVLIPKSDPQLKKSDFLKNK KISLNYIAIGDSLTEGVGDLTNQGGFVPLLSGDLGDYFNATVNTENYGVSGNTSQQIL TRMTENKEITEQLKKANLMTLTVGGNDVLAVIRKNLANLKVSSFKKPARQYQERLRKI LDLARKDNQDLPIFVLGIYNPFYLNFQELTEMQTVINDWNKKTQEVVDDYDHVYFVPI NDLLYKGVDGKEGIVQSTGEQTTIVNDALFSGDHFHPNNTGYQIMSDAVMETIRKNGK EIKP" sig_peptide 631028..631120 /locus_tag="SEQ_0648" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0648 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.494 between residues 31 and 32" misc_feature 631040..631108 /locus_tag="SEQ_0648" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0648 by TMHMM2.0 at aa 5-27" misc_feature 631175..631828 /locus_tag="SEQ_0648" /inference="protein motif:PFAM:PF00657" /note="HMMPfam hit to PF00657, GDSL-like Lipase/Acylhydrolase, score 4.8e-22" gene 631890..632435 /locus_tag="SEQ_0649" /db_xref="GeneID:7695638" CDS 631890..632435 /locus_tag="SEQ_0649" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002746003.1" /db_xref="GI:225870056" /db_xref="GeneID:7695638" /translation="MLLLAFNAAFLAVIGSRIIQIREPKSELINQKAAKNIKIGTLTT TKEQLNEAVVSYLKDFQTEKMTYKVYATSSTILFEGTYQLLGYEVPLYIYFQPHRLTN GAIQLQVLSFSVGTLSLPEKDVLQYLKSSYKLPKFVEVLPKQSAIIINLQQLENDANI YLKAQKIDLVKDDIRFDIYKK" gene 632533..632808 /locus_tag="SEQ_0650" /db_xref="GeneID:7695639" CDS 632533..632808 /locus_tag="SEQ_0650" /codon_start=1 /transl_table=11 /product="DNA-binding protein HU" /protein_id="YP_002746004.1" /db_xref="GI:225870057" /db_xref="GeneID:7695639" /translation="MANKQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQ LIGFGNFEVRERAARKGRNPQTGEEIEIAASKVPAFKAGKALKDAVK" misc_feature 632536..632805 /locus_tag="SEQ_0650" /inference="protein motif:PFAM:PF00216" /note="HMMPfam hit to PF00216, Bacterial DNA-binding protein, score 1.1e-51" misc_feature 632671..632730 /locus_tag="SEQ_0650" /inference="protein motif:Prosite:PS00045" /note="PS00045 Bacterial histone-like DNA-binding proteins signature." gene complement(632869..633657) /locus_tag="SEQ_0651" /db_xref="GeneID:7695640" CDS complement(632869..633657) /locus_tag="SEQ_0651" /codon_start=1 /transl_table=11 /product="mono-ADP-ribosyltransferase" /protein_id="YP_002746005.1" /db_xref="GI:225870058" /db_xref="GeneID:7695640" /translation="MTHQHHNAKLSYQRIAIRTLCLFTFFLSLLVVQPSTIKAQSYDE GQTVVFEPYGNSFKPYYKFSEPDVTKYIITNRWRSQTAFTEAEKKMMYQYTYASASPI NLALEQVMGDTSQLDAQLQQSVALLDSATHKLTIPWNIIVYRYVYETFLTELGTSEEE LARYYHDKTFDPQILSAIKPGTHYTKQGFMSTTAIKNAAMPHRSVELRIQVPQGSQAA FVQPYSFYPYEMELLFPRQCTLEIIGANLSDDHTRLLIETRLLP" sig_peptide complement(632869..632985) /locus_tag="SEQ_0651" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0651 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.991 between residues 39 and 40" misc_feature complement(633211..633381) /locus_tag="SEQ_0651" /inference="protein motif:PFAM:PF03496" /note="HMMPfam hit to PF03496, Clostridial binary toxin A, score 5.6e-09" misc_feature complement(633562..633615) /locus_tag="SEQ_0651" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0651 by TMHMM2.0 at aa 15-32" gene complement(633884..635092) /locus_tag="SEQ_0652" /db_xref="GeneID:7695641" CDS complement(633884..635092) /locus_tag="SEQ_0652" /codon_start=1 /transl_table=11 /product="transporter protein" /protein_id="YP_002746006.1" /db_xref="GI:225870059" /db_xref="GeneID:7695641" /translation="MRKNDYQLLASRAINKIGNTVYDYSNSSGIAGLGATGRQYLGYY QLAEGLISLILNPIGGAIADRYKRRQLLLWTDAIGAISCGLLALIANPTIMLYGLITV NALLAISYAFSGTAFRAYVVTLVETERLVHFNAQLEIVSQIISISSPMLAFLVMDCFG IKTALALDSISFLLSFLCLYTIKDKERHITKQSSQGNRLQLLTDIKEGLQFIYHDNDI FSLLIIASLVNFFIAAFNYLIPFSNQLLGSQSSYASLLSMGALGAILGAFMANKLFKN NQQSLLLSLGLSGLGMLLITAMALLKLPVIVIALGNLWFECFLTIFNIHFFSIVQKKV PEALLGRVFSSIVTTAILLMPLATTIMTCIPASVHLATFAVIGIGIMATASLAYYCNY RQSSKKKPFI" misc_feature complement(join(633917..633985,634013..634081, 634115..634183,634193..634252,634271..634330, 634373..634441,634547..634615,634625..634684, 634745..634813,634823..634882)) /locus_tag="SEQ_0652" /inference="protein motif:TMHMM 2.0" /note="10 transmembrane helices predicted for SEQ0652 by TMHMM2.0 at aa 71-90, 94-116, 137-156, 160-182, 218-240, 255-274, 281-300, 304-326, 338-360 and 370-392" gene complement(635147..636040) /locus_tag="SEQ_0653" /db_xref="GeneID:7695642" CDS complement(635147..636040) /locus_tag="SEQ_0653" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="YP_002746007.1" /db_xref="GI:225870060" /db_xref="GeneID:7695642" /translation="MTNHQLGKAFRSIRQNRNITLQQLASKDVSLSQLSRFERGESDL SVTKFLTALDSMQVEISEFMDIAANFKQTEQIQFMSQLIKLEYARDIEGFKQLQKQEL AKHQADPDTNRYYLNSILLQGFICKCNPSIPFPKAYLDEVTDYLFRTESWHIYELILI GNLYLFIDIPLLDKMGKEILNNHTYYESISTNKHLVTITLLNIWETCIHRHQLDYARY YQKQILALLNNETKLYEKTIFLFLKGLEDYQRGQCLSGIKDMTTAISIFESLDCPHLA HNYQKDFERFVASSSLICKKT" misc_feature complement(635852..636013) /locus_tag="SEQ_0653" /inference="protein motif:PFAM:PF01381" /note="HMMPfam hit to PF01381, Helix-turn-helix, score 2.9e-06" gene 636409..636582 /locus_tag="SEQ_0654" /db_xref="GeneID:7695643" CDS 636409..636582 /locus_tag="SEQ_0654" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002746008.1" /db_xref="GI:225870061" /db_xref="GeneID:7695643" /translation="MPIIVILGLAIFSVVKVIIFLCFYKAFEKKQLKKLEQDQKETKQ AIDQEESKKAFPF" misc_feature 636418..636480 /locus_tag="SEQ_0654" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0654 by TMHMM2.0 at aa 4-24" gene complement(636627..637562) /locus_tag="SEQ_0655" /db_xref="GeneID:7695644" CDS complement(636627..637562) /locus_tag="SEQ_0655" /EC_number="1.3.3.1" /codon_start=1 /transl_table=11 /product="dihydroorotate dehydrogenase" /protein_id="YP_002746009.1" /db_xref="GI:225870062" /db_xref="GeneID:7695644" /translation="MVSTATKIATFAFNNCLMNAAGVYCMTKEELLAIEASEAGSFVT KTGTLAPRQGNPEPRYADTALGSINSMGLPNHGYQYYLDIVTEMQKDQASKHHFLSVV GMSAEETETILKAIQASDYQGLVELNLSCPNVPGKPQLAYDFEATDQLLKKIFSYYTK PLGIKLPPYFDIVHFDQAAAIFNQYPLAFANCVNSIGNGLVIDDEQVVIKPKNGFGGI GGDYIKPTALANVHAFYQRLNSSIQIIGTGGVKTGRDAFEHILCGAAMVQIGTALHQE GPAIFKRITKELQDIMAEKGYQTLDDFRGQLQYKP" misc_feature complement(636687..637556) /locus_tag="SEQ_0655" /inference="protein motif:PFAM:PF01180" /note="HMMPfam hit to PF01180, Dihydroorotate dehydrogenase, score 9.9e-110" misc_feature complement(636771..636833) /locus_tag="SEQ_0655" /inference="protein motif:Prosite:PS00912" /note="PS00912 Dihydroorotate dehydrogenase signature 2." gene 637805..638500 /gene="gpmA" /locus_tag="SEQ_0656" /db_xref="GeneID:7695645" CDS 637805..638500 /gene="gpmA" /locus_tag="SEQ_0656" /EC_number="5.4.2.1" /codon_start=1 /transl_table=11 /product="2,3-bisphosphoglycerate-dependent phosphoglycerate mutase" /protein_id="YP_002746010.1" /db_xref="GI:225870063" /db_xref="GeneID:7695645" /translation="MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIK EAGIAFDLAFTSVLKRAIKTTNLALEYSDQLWVPVEKSWRLNERHYGGLTGKNKAEAA EQFGDEQVHIWRRSYDVLPPDMAKDDEHSAHTDRRYAHLDHSVIPDAENLKVTLERAL PFWEDKIAPALVDGKNVFVGAHGNSIRALVKHIKQLSDDEIMNVEIPNFPPLVFEFDD KLNLTAEYYLGGE" misc_feature 637811..638371 /gene="gpmA" /locus_tag="SEQ_0656" /inference="protein motif:PFAM:PF00300" /note="HMMPfam hit to PF00300, Phosphoglycerate mutase family, score 1.9e-44" gene 638609..639130 /locus_tag="SEQ_0657" /db_xref="GeneID:7695646" CDS 638609..639130 /locus_tag="SEQ_0657" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="YP_002746011.1" /db_xref="GI:225870064" /db_xref="GeneID:7695646" /translation="MKVKERREAITDRLSQAQEAISATSLAKALGVSRQVIVGDIALL RAQQLDIISTPKGYILSNALFSHHYSARIVCQHGPEQTRQELELILAHDGIVTNVEVE HPIYGMLTAPLNIKSSADINNFIEKLGASKAELLSSLTEGLHTHLLSCPDQEAFEEIK RDLAAAGILYGEQ" misc_feature 638624..638785 /locus_tag="SEQ_0657" /inference="protein motif:PFAM:PF08279" /note="HMMPfam hit to PF08279, HTH domain, score 1.2e-15" misc_feature 638669..638734 /locus_tag="SEQ_0657" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1167.000, SD 3.16 at aa 21-42, sequence ISATSLAKALGVSRQVIVGDIA" misc_feature 638825..639118 /locus_tag="SEQ_0657" /inference="protein motif:PFAM:PF02829" /note="HMMPfam hit to PF02829, 3H domain, score 2.8e-24" gene 639525..640064 /locus_tag="SEQ_0658" /db_xref="GeneID:7695647" CDS 639525..640064 /locus_tag="SEQ_0658" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002746012.1" /db_xref="GI:225870065" /db_xref="GeneID:7695647" /translation="MTKKPTQLIAYSSILVAFAILIPMIMPIKLIIGPASFTLASHLP LFLAIFISIPVAILVGIGTGLGFLLAGFPMIIVMRAFSHVLFAAIAAFMLKRQPKWLE TPLRTFVFGIIANVIHGLAEFLVVYLMTATAATDLSYFWSMLMLVGFGSLLHGMVDFY LALFIWRFLRQKGHLSVTS" sig_peptide 639525..639644 /locus_tag="SEQ_0658" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0658 by SignalP 2.0 HMM (Signal peptide probability 0.907) with cleavage site probability 0.722 between residues 40 and 41" misc_feature join(639552..639620,639657..639725,639738..639806, 639843..639911,639954..640022) /locus_tag="SEQ_0658" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0658 by TMHMM2.0 at aa 10-32, 45-67, 72-94, 107-129 and 144-166" gene 640202..640972 /locus_tag="SEQ_0659" /db_xref="GeneID:7695648" CDS 640202..640972 /locus_tag="SEQ_0659" /codon_start=1 /transl_table=11 /product="formate/nitrite transporter family protein" /protein_id="YP_002746013.1" /db_xref="GI:225870066" /db_xref="GeneID:7695648" /translation="MKTPEQILAATITIGEHKVAKPFLAKAILGFIGGAMISLGYLLY VRIAASGLETFGAFSSILGACAFPIGLIIILMAGGELITGNMMAVSAAFFAKKIKAKD LMANWLVITLFNILGALFVAFVFGHFLGLTATGSFKEEVIEVAHAKLAATPLQAIVSG IGCNWFVGLALWLCYGASDATGKLLGTWFPVMTFVALGFQHSVANAFVIPAAIFEGGA SWIDFATNFALVYVGNVLGGAIFVSLFYYKAYDHSKEA" misc_feature 640202..640966 /locus_tag="SEQ_0659" /inference="protein motif:PFAM:PF01226" /note="HMMPfam hit to PF01226, Formate/nitrite transporter, score 7.8e-39" misc_feature join(640268..640336,640379..640447,640508..640576, 640667..640735,640772..640840,640868..640936) /locus_tag="SEQ_0659" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0659 by TMHMM2.0 at aa 23-45, 60-82, 103-125, 156-178, 191-213 and 223-245" misc_feature 640364..640396 /locus_tag="SEQ_0659" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 640424..640453 /locus_tag="SEQ_0659" /inference="protein motif:Prosite:PS01005" /note="PS01005 Formate and nitrite transporters signature 1." misc_feature 640658..640690 /locus_tag="SEQ_0659" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 640736..640774 /locus_tag="SEQ_0659" /inference="protein motif:Prosite:PS00213" /note="PS00213 Lipocalin signature." gene 641084..643138 /locus_tag="SEQ_0660" /db_xref="GeneID:7695649" CDS 641084..643138 /locus_tag="SEQ_0660" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2b" /protein_id="YP_002746014.1" /db_xref="GI:225870067" /db_xref="GeneID:7695649" /translation="MASWIKKKKASIPRRIHLLFLVIVFLFVALILRLAQMQIYEKDF YKAKLTASTVYKVKSSMPRGTIFDRNGKVLVSNRIKDVVTYTRSPKASAKDIKALAHQ LAAYISYPEAKVTVRAKKDYYLADPEAYAKTVQALPQKDKVDRFGNKLVEAQIYQNAA ASLKETDLTYSDQELKVIAIFNQMNAAAVFSTVKLKTSALSEQDIAIIMANKSKLPGI SVGTDWERQVEETSLAAIIGRVSSEEAGLPKEEAKAYLKKGYSLNDRVGTSYLEKQYE EVLQGKHEIREIKTSRSGEVISDKIVEKGQMGRNLKLSVPLDFQQGVEQILNQHFQTE LKNGQAAYSEGIYAVALNPNTGAILAMAGLSHNPKTGELQKDALGTITDVFTPGSVVK GATLAAGWQAGVIQGNQVLIDQPIQFGGSQPINSWFTSGQHPITASQALEYSSNTYMV QVALRMMGQDYVTGMTLANTGMKETMKKLRAAYAEFGMGVATGVDLPGESSGYLIDQY NTANVLTEAFGQFDNYTTMQLAQYVSTIANGGSRLAPHIVEGIYQDNDQSGPGKLSKA IETTLLNKVHLAADSLAIIQDGFYQVVNSGSGYATGRALAGGPVTISAKTGTAETYAK DKNGQALSTFNLNVVAYGPSASPQIAVAVMYPHATDSLAKAHQYVAKDIINLYMKMYK NQ" sig_peptide 641084..641206 /locus_tag="SEQ_0660" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0660 by SignalP 2.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.263 between residues 41 and 42" misc_feature 641129..641188 /locus_tag="SEQ_0660" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0660 by TMHMM2.0 at aa 16-35" misc_feature 641255..641986 /locus_tag="SEQ_0660" /inference="protein motif:PFAM:PF03717" /note="HMMPfam hit to PF03717, Penicillin-binding Protein dimerisatio, score 1.3e-37" misc_feature 642119..643108 /locus_tag="SEQ_0660" /inference="protein motif:PFAM:PF00905" /note="HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 8.7e-86" gene 643150..643746 /gene="recR" /locus_tag="SEQ_0661" /db_xref="GeneID:7695650" CDS 643150..643746 /gene="recR" /locus_tag="SEQ_0661" /codon_start=1 /transl_table=11 /product="recombination protein RecR" /protein_id="YP_002746015.1" /db_xref="GI:225870068" /db_xref="GeneID:7695650" /translation="MLYPIPIAKLIESYSKLPGIGVKTATRLAFYTIGMSDEDVNDFA KNLLAAKRELTYCSICGNLTDDDPCHICTDSSRDKEIILVVEDSKDVSAMEKIQEYHG YYHVLHGLISPMNGVGPDDINLKSLITRLMAGEATEVIVATNATADGEATAMYISRLL KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL" misc_feature 643261..643386 /gene="recR" /locus_tag="SEQ_0661" /inference="protein motif:PFAM:PF02132" /note="HMMPfam hit to PF02132, RecR protein, score 7.6e-20" misc_feature 643318..643380 /gene="recR" /locus_tag="SEQ_0661" /inference="protein motif:Prosite:PS01300" /note="PS01300 RecR protein signature." misc_feature 643387..643668 /gene="recR" /locus_tag="SEQ_0661" /inference="protein motif:PFAM:PF01751" /note="HMMPfam hit to PF01751, Toprim domain, score 3e-16" gene 643894..644940 /gene="ddl" /locus_tag="SEQ_0662" /db_xref="GeneID:7695651" CDS 643894..644940 /gene="ddl" /locus_tag="SEQ_0662" /EC_number="6.3.2.4" /codon_start=1 /transl_table=11 /product="D-alanine--D-alanine ligase" /protein_id="YP_002746016.1" /db_xref="GI:225870069" /db_xref="GeneID:7695651" /translation="MSKQTLILLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFIS QTGQFIKTQEFSSRPTLTERLMTNDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGS IQGFLEVLKMPYVGTNILSSSVAMDKITTKRVLESAGIPQVAYTVYIEGQDLDRCLAE TEAVLSYPVFVKPANMGSSVGISKAESEEELRAAILLALTYDSRILIEQGVLAREIEV GLLGNTDVKSTLPGEVVKNVDFYDYQAKYIDNEITMAIPAAIDESAMTSMRTYAETAF KAIGACGLSRCDFFLGQDGQIYLNELNTMPGFTQWSMYPLLWEHMGLSYAELIEELVR LAQEMFEKREGHLI" misc_feature 643909..644271 /gene="ddl" /locus_tag="SEQ_0662" /inference="protein motif:PFAM:PF01820" /note="HMMPfam hit to PF01820, D-ala D-ala ligase N-terminus, score 3.6e-36" misc_feature 644173..644208 /gene="ddl" /locus_tag="SEQ_0662" /inference="protein motif:Prosite:PS00843" /note="PS00843 D-alanine--D-alanine ligase signature 1." misc_feature 644272..644895 /gene="ddl" /locus_tag="SEQ_0662" /inference="protein motif:PFAM:PF07478" /note="HMMPfam hit to PF07478, D-ala D-ala ligase C-terminus, score 1.3e-94" misc_feature 644272..644817 /gene="ddl" /locus_tag="SEQ_0662" /inference="protein motif:PFAM:PF02222" /note="HMMPfam hit to PF02222, ATP-grasp domain, score 0.002" misc_feature 644728..644814 /gene="ddl" /locus_tag="SEQ_0662" /inference="protein motif:Prosite:PS00844" /note="PS00844 D-alanine--D-alanine ligase signature 2." repeat_region 645102..645134 /note="perfect repeat flanking IS element" repeat_region join(645134..646309,647739..648483) /note="ISSeq4" repeat_region 645134..645150 /note="perfect inverted repeat flanking IS element" repeat_region complement(646310..647738) /note="ISSeq3" repeat_region 646318..646329 /note="perfect inverted repeat flanking IS element" gene complement(646342..647145) /locus_tag="SEQ_0664" /db_xref="GeneID:7695652" CDS complement(646342..647145) /locus_tag="SEQ_0664" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002746017.1" /db_xref="GI:225870070" /db_xref="GeneID:7695652" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITEYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature complement(646357..646839) /locus_tag="SEQ_0664" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 8.8e-38" gene complement(647169..647684) /locus_tag="SEQ_0665" /db_xref="GeneID:7695653" CDS complement(647169..647684) /locus_tag="SEQ_0665" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002746018.1" /db_xref="GI:225870071" /db_xref="GeneID:7695653" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature complement(647241..647522) /locus_tag="SEQ_0665" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature complement(647325..647363) /locus_tag="SEQ_0665" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" misc_feature complement(647565..647630) /locus_tag="SEQ_0665" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" repeat_region complement(647719..647730) /note="perfect inverted repeat flanking IS element" repeat_region complement(648467..648483) /note="perfect inverted repeat flanking IS element" repeat_region 648483..648515 /note="perfect repeat flanking IS element" gene 648560..649945 /locus_tag="SEQ_0667" /db_xref="GeneID:7695654" CDS 648560..649945 /locus_tag="SEQ_0667" /EC_number="6.3.2.10" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase" /protein_id="YP_002746019.1" /db_xref="GI:225870072" /db_xref="GeneID:7695654" /translation="MKLTLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLP LQGERDGHDFIDLAFENGAVATFSERAISGRPYILVENCLAAFQKLAQYYIDKLRVDV IAVTGSNGKTSTKDMIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMG QDHMGDIQLLSRIARPHIALLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAP GDPILDPYLPDSQMVIRFGDHQELVVEDIKECKDSLTFRTNVLPRPVTLPLTGKYNAT NAMIAAYVGKLLAVPDEDIIEALETVKLTRHRTEWVKAANGADLLADVYNANPTAMRL ILETFAAIPANPNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQA LAKLASQDYPSGRVSFFKKNNREDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVD RLTAPHAGKSS" misc_feature 648632..648844 /locus_tag="SEQ_0667" /inference="protein motif:PFAM:PF01225" /note="HMMPfam hit to PF01225, Mur ligase family, catalytic domain, score 1.2e-11" misc_feature 648866..649414 /locus_tag="SEQ_0667" /inference="protein motif:PFAM:PF08245" /note="HMMPfam hit to PF08245, Mur ligase middle domain, score 9.4e-52" misc_feature 649472..649747 /locus_tag="SEQ_0667" /inference="protein motif:PFAM:PF02875" /note="HMMPfam hit to PF02875, Mur ligase family, glutamate ligase doma, score 5.2e-07" gene 650023..650724 /locus_tag="SEQ_0668" /db_xref="GeneID:7695655" CDS 650023..650724 /locus_tag="SEQ_0668" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002746020.1" /db_xref="GI:225870073" /db_xref="GeneID:7695655" /translation="MFMNFFAIEPIGLPHVSLLFYLLSVMIAPFLVFMTLQLYQLKSY RYIFLGLQLVQLVGLYSWYALRGFPLTEALPLYHCRMAMLAIFFLPDRSSLKQLFMVL GIGGTFLALLSPDLYPYQLWHVANISFYLGHYALLVNGLVYLLRFYNPSQLKPVLVCR YLATINFVLVLINLATKGNYGFVMDIPIIHTHHLLMNFVIVTMGLTGLIKLIELIYVR FSEANQLELKLSKER" misc_feature join(650053..650121,650158..650217,650383..650451, 650488..650547,650605..650673) /locus_tag="SEQ_0668" /inference="protein motif:TMHMM 2.0" /note="5 transmembrane helices predicted for SEQ0668 by TMHMM2.0 at aa 11-33, 46-65, 121-143, 156-175 and 195-217" gene 650893..652437 /gene="prfC" /locus_tag="SEQ_0669" /db_xref="GeneID:7695656" CDS 650893..652437 /gene="prfC" /locus_tag="SEQ_0669" /codon_start=1 /transl_table=11 /product="peptide chain release factor 3" /protein_id="YP_002746021.1" /db_xref="GI:225870074" /db_xref="GeneID:7695656" /translation="MSITEEIKKRRTFAIISHPDAGKTTITEQLLYFGGEIREAGTVK GKKSGQFAKSDWMDIEKQRGISVTSSVMQFDYAGKRINILDTPGHEDFSEDTYRTLMA VDAAVMVVDSAKGIEAQTKKLFEVVKHRNIPVFTFINKLDRDGREPLELLEELEEVLG IASYPMNWPIGMGRAFEGLYDLHNKRLELYKGEQRFADLEEGARIFASNPFYEQVLED IELLEEAGNDFSEQAILDGQLTPVFFGSALTNFGVQTFLDTFLAFAPEPHGHKTTTDQ MIDPLNQDFSGFVFKIQANMDPKHRDRIAFVRIVSGEFQKGMAVKLSRTGKSVKLSNV TQFMAESRENVQNAVAGDIIGVYDTGTYQVGDTLSVSKNLFEFEPLPTFTPEIFMKVA PKNVMKQKSFHKGIEQLVQEGAVQLYKNYQTGEYMLGAVGQLQFEVFKHRMEGEYNAE VIMTPMGKKTVRWISEEDLDQRMSSSRNILARDRFDQPVFLFENDFALRWFADKYPDV KLEAKM" misc_feature 650914..651696 /gene="prfC" /locus_tag="SEQ_0669" /inference="protein motif:PFAM:PF00009" /note="HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 1e-66" misc_feature 651055..651102 /gene="prfC" /locus_tag="SEQ_0669" /inference="protein motif:Prosite:PS00301" /note="PS00301 GTP-binding elongation factors signature." misc_feature 651796..651999 /gene="prfC" /locus_tag="SEQ_0669" /inference="protein motif:PFAM:PF03144" /note="HMMPfam hit to PF03144, Elongation factor Tu domain, score 4.5e-13" misc_feature 651844..651873 /gene="prfC" /locus_tag="SEQ_0669" /inference="protein motif:Prosite:PS00732" /note="PS00732 Ribosomal protein S16 signature." gene 652853..654469 /locus_tag="SEQ_0670" /db_xref="GeneID:7695657" CDS 652853..654469 /locus_tag="SEQ_0670" /codon_start=1 /transl_table=11 /product="DEAD box helicase family protein" /protein_id="YP_002746022.1" /db_xref="GI:225870075" /db_xref="GeneID:7695657" /translation="MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQ AQTGTGKTAAFGLPTLNKIRTADNTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRS VYGGSSIEKQIKALKSGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADECLNMGF LEDIEAIISRVPDDRQTLLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYY VRVKEQEKFDTMTRLMDVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQN KRLRVIRDFKNDQLDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAG KSGESITFVSPNEMGYLTMIEHLTKKRMKPLKPATAEEAFQAKKKVALKKIERDFADD AIRSNFEKFKGDAMKLAAEFTPEELALYILSLTVQDPDTLPEVEIAREKPLPFKYVGG GHGNKNGKTGRGNRSRSGRDNRRGGYRHEKRNVYDGDRRPRRDKRDSHDSSGSYDFKR KQKRSNKDLHKKGKAVEAKTSGFIIRHKGN" misc_feature 652925..653425 /locus_tag="SEQ_0670" /inference="protein motif:PFAM:PF00270" /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 2.5e-72" misc_feature 652985..653008 /locus_tag="SEQ_0670" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 653294..653320 /locus_tag="SEQ_0670" /inference="protein motif:Prosite:PS00039" /note="PS00039 DEAD-box subfamily ATP-dependent helicases signature." misc_feature 653624..653854 /locus_tag="SEQ_0670" /inference="protein motif:PFAM:PF00271" /note="HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 6.9e-35" gene 654596..656599 /locus_tag="SEQ_0671" /db_xref="GeneID:7695658" CDS 654596..656599 /locus_tag="SEQ_0671" /codon_start=1 /transl_table=11 /product="potassium transport system protein" /protein_id="YP_002746023.1" /db_xref="GI:225870076" /db_xref="GeneID:7695658" /translation="MSNAHHDAFDKATKAGFIIALGIVYGDIGTSPLYTMQSLVDNQG GLSQVSEAFILGSVSLIIWTLTLVTTIKYVLIALKADNHHEGGIFSLFTLVRRMSRWL IIPAMLGGATLLSDGALTPAVTVTSAIEGLKAVPELSSIYQNQTNVILTTLLILMVLF GLQRFGTGVIGKLFGPVMLVWFSVLGISGLLNSLQHLEILKAINPYYALHLLVSPENH RGIFILGSIFLATTGAEALYSDLGHVGRGNIYASWPFVKVCIILSYCGQAAWILAHKD SGIALNPFFASVPEGLRVYLVILATLAAIIASQALISGSFTLVSEAMRLKIFPLFKIT YPGANLGQLYIPVINWSLFAVTSCTVLYFRTSAHMEAAYGLAITITMLMTTILLAYYL IKEGVKPLLASLLMAFFAFIEFIFFLASAVKFMHGGYVVVVLALAIVFVMVIWHAGTM IVAKYVKSLSLNDYKHQIKLLRDDLRFDLYQTNVVYLTNRMKKDLIDRSILYSILDKR PKRAQVYWFVNVRVTDEPYTATYKVDMLETDYIVCVELYLGFRMPQTVPRYLRTIVQD LMESGRLPKQAQDYTITPGREVGDFRFVIIEERVSHARQLSTLERFVMQTKASIKHVT ASPMRWFGLQYSEATVEVVPLLLSDVLKLPIKEIKACTKDEKA" misc_feature join(654629..654697,654755..654823,654902..654970, 655013..655081,655100..655168,655253..655321, 655340..655408,655466..655534,655595..655663, 655706..655774,655793..655861,655871..655939) /locus_tag="SEQ_0671" /inference="protein motif:TMHMM 2.0" /note="12 transmembrane helices predicted for SEQ0671 by TMHMM2.0 at aa 12-34, 54-76, 103-125, 140-162, 169-191, 220-242, 249-271, 291-313, 334-356, 371-393, 400-422 and 426-448" misc_feature 654647..656569 /locus_tag="SEQ_0671" /inference="protein motif:PFAM:PF02705" /note="HMMPfam hit to PF02705, K+ potassium transporter, score 1.4e-37" misc_feature 655637..655669 /locus_tag="SEQ_0671" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." repeat_region complement(656603..658031) /note="ISSeq3" repeat_region 656611..656622 /note="perfect inverted repeat flanking IS element" gene complement(656635..657438) /locus_tag="SEQ_0672" /db_xref="GeneID:7695659" CDS complement(656635..657438) /locus_tag="SEQ_0672" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002746024.1" /db_xref="GI:225870077" /db_xref="GeneID:7695659" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITEYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature complement(656650..657132) /locus_tag="SEQ_0672" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 8.8e-38" gene complement(657462..657977) /locus_tag="SEQ_0673" /db_xref="GeneID:7695660" CDS complement(657462..657977) /locus_tag="SEQ_0673" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002746025.1" /db_xref="GI:225870078" /db_xref="GeneID:7695660" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature complement(657534..657815) /locus_tag="SEQ_0673" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature complement(657618..657656) /locus_tag="SEQ_0673" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" misc_feature complement(657858..657923) /locus_tag="SEQ_0673" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" repeat_region complement(658012..658023) /note="perfect inverted repeat flanking IS element" gene complement(658186..658467) /locus_tag="SEQ_0674" /db_xref="GeneID:7695340" CDS complement(658186..658467) /locus_tag="SEQ_0674" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002746026.1" /db_xref="GI:225870079" /db_xref="GeneID:7695340" /translation="MTTQKAYMYVLECADKTLYTGYTTDLDKRLKAHNAGKGAKYTRC RLPVSLLYYESFDSKQAAMRAEALFKKRNTRQQKLTYIAEQQNKKAKPD" misc_feature complement(658210..658455) /locus_tag="SEQ_0674" /inference="protein motif:PFAM:PF01541" /note="HMMPfam hit to PF01541, GIY-YIG catalytic domain, score 7e-23" gene complement(658500..659267) /locus_tag="SEQ_0675" /db_xref="GeneID:7696111" CDS complement(658500..659267) /locus_tag="SEQ_0675" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002746027.1" /db_xref="GI:225870080" /db_xref="GeneID:7696111" /translation="MLHSILKDGERIDQLFSSDVQIIQNKEVFSYSIDSVLLSRFPKL PSRGLIVDLCSGNGAVGLFDSTQTKASIVEIELQPRLADMGQRSIRLNQLEDQVTMIC DDLTNLLQHVPRSGVDIILYNPPYFKSSQTSKKNLSEHYLLARHEITTNLAKICQIAR HALKSNGRLAMVHRPDRFLEILDTLKINGLAPKRLQFVYPKLGKEANMLLIEAIKDGS MEGLKILPPLIVHKDNGDYTDTIKEIYFGAKDKAFKN" misc_feature complement(658695..659213) /locus_tag="SEQ_0675" /inference="protein motif:PFAM:PF05175" /note="HMMPfam hit to PF05175, Methyltransferase small domain, score 5.3e-05" misc_feature complement(658890..658910) /locus_tag="SEQ_0675" /inference="protein motif:Prosite:PS00092" /note="PS00092 N-6 Adenine-specific DNA methylases signature." gene 659353..660126 /locus_tag="SEQ_0676" /db_xref="GeneID:7696112" CDS 659353..660126 /locus_tag="SEQ_0676" /codon_start=1 /transl_table=11 /product="acyltransferase" /protein_id="YP_002746028.1" /db_xref="GI:225870081" /db_xref="GeneID:7696112" /translation="MSRIISEKETDVFYVYLRGLVVFLLWVVNGNAHYHNEDRILDKS ENYILVAPHRTFWDPVYMAFAARPKQFIFMAKKELFTNRLFAWWIKMCGAFPIDREKP SPDAIRYPVNMLKKSNRSLVMFPSGSRHATDVKGGVAVIAKMAKVKIMPAAYQGPMTL KGLLAGERVDMNFGHAIDVSDIKRMNDEEIEEVARRIQAEFDRLDQEMAPFKSNQRRS MLTYLYRIPLGILLVLILALTMLFSYLASFVWDPDKHRS" misc_feature join(659386..659454,660034..660102) /locus_tag="SEQ_0676" /inference="protein motif:TMHMM 2.0" /note="2 transmembrane helices predicted for SEQ0676 by TMHMM2.0 at aa 12-34 and 228-250" misc_feature 659443..659817 /locus_tag="SEQ_0676" /inference="protein motif:PFAM:PF01553" /note="HMMPfam hit to PF01553, Acyltransferase, score 3.9e-25" gene 660445..661005 /locus_tag="SEQ_0677" /db_xref="GeneID:7696113" CDS 660445..661005 /locus_tag="SEQ_0677" /codon_start=1 /transl_table=11 /product="competence protein" /protein_id="YP_002746029.1" /db_xref="GI:225870082" /db_xref="GeneID:7696113" /translation="MLEELFLKSKEMIKSPYFLSRCVTGVLSVGLLLVLWIALTGKEK AREESAPFPDHSQVQQSEKPAQLEASEQEMAAAEDIVVDIKGAVHKEGVYKLAKGSRI TDLIELAGGLTDQADKNAINLAEKLSDEKVVYVAKLGENISVIKGSSAEAQSASADHQ KPEKVHLNRASLADLQSIPGIGAKRA" sig_peptide 660445..660579 /locus_tag="SEQ_0677" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0677 by SignalP 2.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.840 between residues 45 and 46" misc_feature 660493..660561 /locus_tag="SEQ_0677" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0677 by TMHMM2.0 at aa 17-39" gene 661106..663349 /locus_tag="SEQ_0678" /db_xref="GeneID:7696114" CDS 661106..663349 /locus_tag="SEQ_0678" /codon_start=1 /transl_table=11 /product="competence protein" /protein_id="YP_002746030.1" /db_xref="GI:225870083" /db_xref="GeneID:7696114" /translation="MRFPLTKYFPIAPIQFALLVLVLHYLIYRPSWLTAGLLAGLLVL LGYRFVLKQVLKTLLLLGLFGCLFAYQKGQLEANQINQPDRLSTVELIPDSIMVNGDH LSFIGRHSGHHYQLAYRMTSKEEADFFKQQSQFLKLKADIRLEEAAGLRNFKGFNHQA YLAYQGIFRVGKIKSLQSLKTISPRSVSDRISQWRRQAIVWCQSRFPQPMSHYMTGLL FGYLDKSFGQMTELYSQLGIIHLFALSGMQVGFFLTYLRRGLVWLHIPIDKIKLLEVV CSFCYSGLTGHSISVIRSLLQAQLRHIGLTGLDNLAMTFLMMFLINGHFLMSIGGVLS FAYAFIIATVRFEELSGNKQRLLKALAISFGIVPLLAYYFSVFNPISVVLTALLAYLF DGLILPGLAILFFFSPLAVVTAVNPFFLYLEKGIGMIGSYFSAPLVLGSPTALQLCLC MACLAIVYDYRGNRGLQLVAGGLLLLTLFTVKWPMTNEVTLVDVGQGDSIFIRDKQNH TMLIDVGGVPAPQEKEQWRRKYQACNAHKTLIPYLRSRGVDTIDQLVLTHTDTDHVGD MEAVVKAFRVKQIYVSQGSLTNASFVKRLQGLAAKVKAISAGDHLPIMGSFLEVLYPW EIGDGKNNDSLVLYGRLLDKSFLFTGDLEAEGEERLIARYPKLKADVLKAAHHGSKGS SIPAFLDHIQPQLSLISAGRNNQYQHPNPETLARFEARHIPYYSTASKGAIRLTGQAH WQLESCR" misc_feature join(661118..661186,661199..661258,661811..661870, 661913..661981,662060..662128,662213..662281, 662300..662368,662411..662479,662498..662566) /locus_tag="SEQ_0678" /inference="protein motif:TMHMM 2.0" /note="9 transmembrane helices predicted for SEQ0678 by TMHMM2.0 at aa 5-27, 32-51, 236-255, 270-292, 319-341, 370-392, 399-421, 436-458 and 465-487" misc_feature 661754..662494 /locus_tag="SEQ_0678" /inference="protein motif:PFAM:PF03772" /note="HMMPfam hit to PF03772, Competence protein, score 1.3e-38" gene 663462..664523 /gene="holA" /locus_tag="SEQ_0679" /db_xref="GeneID:7696115" CDS 663462..664523 /gene="holA" /locus_tag="SEQ_0679" /codon_start=1 /transl_table=11 /product="DNA polymerase III delta subunit" /protein_id="YP_002746031.1" /db_xref="GI:225870084" /db_xref="GeneID:7696115" /translation="MIAIEKIDALSKESLGLITVVTGEDIGQYSHMKALLLKKIAFDP ADLTYSYFDMSEALYQTAEMDLVSMPFFADQKVVIFDHLLDITTSKKSYLKEKELKAF EDYLENPVETTRLVIFAPGKLDGKRRLVKILKRDALIFEASPLKAAEKRTYFQKYSHQ LDLSFASGAFDQLLLKSNDDFSQIMKNMTFLKAYKKSGPITVEDIAQAIPKSLQDNVF DLTRLVLQGKIDAARELVHDLRLSGEDDIKLIAIMLGQFRLFLQLATLVRSGKTEQQL VTSLSDLLGRRVNPYQVKYALKDSRALSLSYLQLAVKTLIETDYHIKTGVYTKDYLFD LALLKLVAHSQGNTDLSDL" misc_feature 663516..664475 /gene="holA" /locus_tag="SEQ_0679" /inference="protein motif:PFAM:PF06144" /note="HMMPfam hit to PF06144, DNA polymerase III, delta subunit, score 2e-115" gene 664601..665206 /locus_tag="SEQ_0680" /db_xref="GeneID:7696116" CDS 664601..665206 /locus_tag="SEQ_0680" /EC_number="1.15.1.1" /codon_start=1 /transl_table=11 /product="superoxide dismutase [Mn]" /protein_id="YP_002746032.1" /db_xref="GI:225870085" /db_xref="GeneID:7696116" /translation="MTITLPDLPYAYDALEPYFDTETMTLHHDKHHATYVANTNTALE KYPELGENLEELLADVSSIPADIRQAVINNGGGHLNHALFWELLSPEKQEVSADVAAA IDDAFGSFAAFKEQFTAAATGRFGSGWAWLVVNKAGQLEITSTANQDTPISEGKQPIL ALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSEFYQAAK" misc_feature 664604..664867 /locus_tag="SEQ_0680" /inference="protein motif:PFAM:PF00081" /note="HMMPfam hit to PF00081, Iron/manganese superoxide dismutases, alpha-, score 2.2e-42" misc_feature 664886..665191 /locus_tag="SEQ_0680" /inference="protein motif:PFAM:PF02777" /note="HMMPfam hit to PF02777, Iron/manganese superoxide dismutases, C-term, score 3e-61" misc_feature 665087..665110 /locus_tag="SEQ_0680" /inference="protein motif:Prosite:PS00088" /note="PS00088 Manganese and iron superoxide dismutases signature." gene complement(665457..666671) /locus_tag="SEQ_0681" /db_xref="GeneID:7696117" CDS complement(665457..666671) /locus_tag="SEQ_0681" /codon_start=1 /transl_table=11 /product="exported protein" /protein_id="YP_002746033.1" /db_xref="GI:225870086" /db_xref="GeneID:7696117" /translation="MKYIHSGLMFLLFVLFVVSFAKHEQARLAFEQSHQAYKDMVISF EKRHIKQQPSSLSDQFQLRKDLLHYAKKLAQDGWSYEAIEKGYLGHLKPKQASYNFEQ LYQSLQIIGSPAFHRMWERQPRAQHKLEAKRDLSLLLSYVKMPEELSGQSAETKQLLK QFSPSLSPTDAFWDQLASLIQLYYDHLEHIPYQTFNRKLYQLRYVLSVQQIEWVRNNY GRAGKTDADALARYLATLDESDYSLNESARYHNKVASHLDTANQLQITYPDNFPQANY KILIHFHSEFILSEAGHFLAALDPQQPSQNGLINGSSFNYANQNNDLHRLLDIEPIEL FEPDFIETAMINLDSPFIVPDLEQQNDQQHPIFSRDGKSSKQLTKAAAKAFKKLLRHY QQAHQSFPSKTP" sig_peptide complement(665457..665534) /locus_tag="SEQ_0681" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0681 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.573 between residues 26 and 27" gene complement(666681..667709) /gene="queA" /locus_tag="SEQ_0682" /db_xref="GeneID:7696118" CDS complement(666681..667709) /gene="queA" /locus_tag="SEQ_0682" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine:tRNA ribosyltransferase-isomerase" /protein_id="YP_002746034.1" /db_xref="GI:225870087" /db_xref="GeneID:7696118" /translation="MNTNDFDFELPEELIAQTPLEQRDRSKLLIIDHQEHTMTDSHFD HIIDQLEPGDALVMNNTRVLPARLYGEKMETHGHVELLLLKNIQGDQWEVLAKPAKRL KAGAQISFGDGRLKARVIQELEHGGRIVEFSYDGIFLEILETLGEMPLPPYIHEKLAD AERYQTVYAKENGSAAAPTAGLHFTQELLQKIEAKGVHLVYLTLHVGLGTFRPVSVDN IDEHDMHSEFYLLSEEAAQTLRKVKAAGGRIIAVGTTSIRTLETIGSKFQGQILADSG WTNIFIKPGYQFKVVDAFSTNFHLPKSTLVMLVSAFAGRDFVLEAYKHAIDEHYRFFS FGDAMFVK" misc_feature complement(667062..667709) /gene="queA" /locus_tag="SEQ_0682" /inference="protein motif:PFAM:PF02547" /note="HMMPfam hit to PF02547, Queuosine biosynthesis protein, score 6.3e-118" gene 667977..668681 /locus_tag="SEQ_0683" /db_xref="GeneID:7696119" CDS 667977..668681 /locus_tag="SEQ_0683" /EC_number="3.5.99.6" /codon_start=1 /transl_table=11 /product="glucosamine-6-phosphate isomerase" /protein_id="YP_002746035.1" /db_xref="GI:225870088" /db_xref="GeneID:7696119" /translation="MKIIRVQDQLEGGKVAFSLLKESLAKGATTLGLATGSTPITFYQ ELVNSDLDCSALTSINLDEYVGLPVENDQSYDYFMRDQLFNAKPFKESFLPNGLADDL EAEVKRYDQVIAEHPIDFQILGIGRNGHIGFNEPGTSFAEKTHVVDLQASTIEANSRF FASIDDVPKQAISMGIASIMASKMIVLLAFGKEKAAAIKGMVSGPVTEALPASVLQQH DNVVVIIDEAAASELD" misc_feature 668031..668675 /locus_tag="SEQ_0683" /inference="protein motif:PFAM:PF01182" /note="HMMPfam hit to PF01182, Glucosamine-6-phosphate isomerases/6-, score 6.8e-41" gene 668853..669569 /locus_tag="SEQ_0684" /db_xref="GeneID:7696120" CDS 668853..669569 /locus_tag="SEQ_0684" /EC_number="4.2.1.70" /codon_start=1 /transl_table=11 /product="ribosomal small subunit pseudouridine synthase A" /protein_id="YP_002746036.1" /db_xref="GI:225870089" /db_xref="GeneID:7696120" /translation="MRLDKLLEVTGFGSRNQVKQLIKGRSVLIDGQPARAGCQSVDSG LQVIMVNGRQIKAFAHRYYLLHKPAGVVSACSDRKHQTVIDLIRKEDRVANLYPIGRL DRDTTGLVLLTDNGPLGFRMLHPKHHVNKTYLVTVNGSLAADAVPFFENGVTFLDGTR CKSAALRIIKADQMESQAEVTLSEGKYHQIKKMFLSYGLKVTQLKRIGFAEIALGDLA EGAYRQLTVKEKKLIKTYLT" misc_feature 668853..668993 /locus_tag="SEQ_0684" /inference="protein motif:PFAM:PF01479" /note="HMMPfam hit to PF01479, S4 domain, score 2.5e-07" misc_feature 669033..669440 /locus_tag="SEQ_0684" /inference="protein motif:PFAM:PF00849" /note="HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 7.2e-15" misc_feature 669150..669194 /locus_tag="SEQ_0684" /inference="protein motif:Prosite:PS01149" /note="PS01149 Rsu family of pseudouridine synthase signature." misc_feature 669661..670194 /inference="protein motif:PFAM:PF06054" /note="HMMPfam hit to PF06054, Competence protein CoiA-like family, score 4.7e-27" repeat_region 670195..671623 /note="ISSeq3" repeat_region 670203..670214 /note="perfect inverted repeat flanking IS element" gene 670249..670764 /locus_tag="SEQ_0686" /db_xref="GeneID:7696121" CDS 670249..670764 /locus_tag="SEQ_0686" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002746037.1" /db_xref="GI:225870090" /db_xref="GeneID:7696121" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature 670303..670368 /locus_tag="SEQ_0686" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" misc_feature 670411..670692 /locus_tag="SEQ_0686" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature 670570..670608 /locus_tag="SEQ_0686" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" gene 670788..671591 /locus_tag="SEQ_0687" /db_xref="GeneID:7696122" CDS 670788..671591 /locus_tag="SEQ_0687" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002746038.1" /db_xref="GI:225870091" /db_xref="GeneID:7696122" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITDYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature 671094..671576 /locus_tag="SEQ_0687" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 1.1e-37" repeat_region complement(671604..671615) /note="perfect inverted repeat flanking IS element" gene 672060..673862 /locus_tag="SEQ_0689" /db_xref="GeneID:7696123" CDS 672060..673862 /locus_tag="SEQ_0689" /codon_start=1 /transl_table=11 /product="oligopeptidase" /protein_id="YP_002746039.1" /db_xref="GI:225870092" /db_xref="GeneID:7696123" /translation="MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLLAAIEAARQQA GHLLDSSSSLLDITELHLELARRVEKVYVYASMKNDQDTTVAKYQEYQAKASGIYAKF SEAFSFYEPEFMALSQEAYQAFLAETPELTVYDHFFDKLFKTREHVLSQAEEELLAGA QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRKVRRAAYEAM YSTYEQFQHTYAKTLQTNVKVQNYKARVHKYASARQAAMSANFIPEAVYDTLLENVNK HLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALEKAEKVLAVFGQDYS ERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSL HSTFTRETQPYVYGDYSIFLAEIASTTNENIMTEALLHEVQDDKERFAILNHYLDGFR GTVFRQTQFAEFEHAIHQADQNGEVLTSEYLNNLYADLNEKYYGLKKEDNHFIQYEWA RIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPLEVIAKA GVDMAKGDYLEAAFRVFEERLTELEDLVARGAHL" misc_feature 672393..672602 /locus_tag="SEQ_0689" /inference="protein motif:PFAM:PF08439" /note="HMMPfam hit to PF08439, Oligopeptidase F, score 1.2e-24" misc_feature 672660..673805 /locus_tag="SEQ_0689" /inference="protein motif:PFAM:PF01432" /note="HMMPfam hit to PF01432, Peptidase family M3, score 6e-148" gene 674061..674618 /locus_tag="SEQ_0690" /db_xref="GeneID:7696124" CDS 674061..674618 /locus_tag="SEQ_0690" /codon_start=1 /transl_table=11 /product="acetyltransferase (GNAT) family protein" /protein_id="YP_002746040.1" /db_xref="GI:225870093" /db_xref="GeneID:7696124" /translation="MKEIRTIALADQAAFKRFQDILLAEKASGNTFVETKKVEDFAAF VEQSRRFEVQTDHPDWSTSTNYYYFLDGQLVARIGCRWQLEKGDLATIGGHIGYVTRT DYRGRGIMTDLLAFALQQYQERGIKRVLITANKDNIASRKTIEKAGGILEDIVQVADD YPTTSLAGQAIARYWIDLRGKDCDS" misc_feature 674256..674510 /locus_tag="SEQ_0690" /inference="protein motif:PFAM:PF00583" /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.6e-10" gene 674608..675240 /locus_tag="SEQ_0691" /db_xref="GeneID:7696125" CDS 674608..675240 /locus_tag="SEQ_0691" /codon_start=1 /transl_table=11 /product="haloacid dehalogenase-like hydrolase" /protein_id="YP_002746041.1" /db_xref="GI:225870094" /db_xref="GeneID:7696125" /translation="MTVNLIWDFDGTLVQSSEAIRQALGLLYQTYQLPFDEAWVMDTI IQESIGQLLKRLAEAHQLDFSELLAFFTREQEARDHLIALMPTAKETLALTSQQGVKP FIVTHKGRTTQAVLQRLGIADYFTEVITADCGFKRKPDPEALLFLIHHYQMDKSQTYY IGDRPLDLAAARAAGISSINLLLPDSDDNHHISQLSDIVELFSGKNSSSN" misc_feature 674611..675159 /locus_tag="SEQ_0691" /inference="protein motif:PFAM:PF00702" /note="HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 4.4e-22" gene 675290..675928 /locus_tag="SEQ_0692" /db_xref="GeneID:7696126" CDS 675290..675928 /locus_tag="SEQ_0692" /codon_start=1 /transl_table=11 /product="haloacid dehalogenase-like hydrolase" /protein_id="YP_002746042.1" /db_xref="GI:225870095" /db_xref="GeneID:7696126" /translation="MKTSLIFDMDGVIVDSEYIFLSTKTQMLLDRGIDTNEAYQYQFM GTTFDDMWTTMKKECQLEDSVEALIAEMNHRRQAMLERDGVKAIAGAAQLIKHLHAKG YRLAVASSSPKADIIRNLTALGLLDCFEVLVSGEEVARSKPAPDIFLKAAEWLSVDPK TCLVIEDSKHGSQAAKAAQMTCIGFANPDYPLQDLSACDSIVKQLKAVCELL" misc_feature 675293..675853 /locus_tag="SEQ_0692" /inference="protein motif:PFAM:PF00702" /note="HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 8.1e-25" gene 676011..676718 /locus_tag="SEQ_0693" /db_xref="GeneID:7696127" CDS 676011..676718 /locus_tag="SEQ_0693" /codon_start=1 /transl_table=11 /product="O-methyltransferase" /protein_id="YP_002746043.1" /db_xref="GI:225870096" /db_xref="GeneID:7696127" /translation="MVKSYSKNANHNMRRSIVKEDIVHYMRTQLKQNEGFLAELEAFA RQENIPIIQHEVVAYFRLLLQSLQPKRILEIGTAIGFSALLMAENAPEAEIITIDRNA EMIGFAKENFAKYDSRKQITLLEGDAADLLAGLTGEFDFVFMDSAKSKYIQFLPEVLK HLKIGGMVVLDDVFQGGDIAKPIKEVRRGQRTIYRGLQDLFAATLDNPGLTASLLPLS DGLLMIRKNQADIRLLD" misc_feature 676086..676691 /locus_tag="SEQ_0693" /inference="protein motif:PFAM:PF01596" /note="HMMPfam hit to PF01596, O-methyltransferase, score 6.8e-13" misc_feature 676227..676520 /locus_tag="SEQ_0693" /inference="protein motif:PFAM:PF08241" /note="HMMPfam hit to PF08241, Methyltransferase domain, score 6.2e-09" misc_feature 676227..676514 /locus_tag="SEQ_0693" /inference="protein motif:PFAM:PF08242" /note="HMMPfam hit to PF08242, Methyltransferase domain, score 6e-05" gene 676781..677782 /locus_tag="SEQ_0694" /db_xref="GeneID:7696128" CDS 676781..677782 /locus_tag="SEQ_0694" /EC_number="5.2.1.8" /codon_start=1 /transl_table=11 /product="foldase protein PrsA precursor" /protein_id="YP_002746044.1" /db_xref="GI:225870097" /db_xref="GeneID:7696128" /translation="MKKSTKLLAGIVTLASAMTLAACQSTNDNTSVITMKGDTISVSD FYNETKNTEISQRAMLNLVVSRVFEDQYGKKVSKKRTEEAYNKSAEQYGASFSAALAQ SGLTTDTYKRQIRSAMLVEYAVKEAAKKELTDADYKKAYESYTPEMTTQVTTLDNEET AKAVLGEVKAEGADFAAIAKEKTTAADKKVDYKFDSGDTKLPADVIKAASGLKEGDIS EVVSVLDPATYQNKFYIVKVTKKAEKASDWKKYKKRLKEIVLAEKTQNIDFQNKVIAK ALDKANVKIKDQAFANILAQYANTDKKASKANTSKSDQKSSSDSSKDSQSSKSKSEK" sig_peptide 676781..676852 /locus_tag="SEQ_0694" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0694 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.517 between residues 24 and 25" misc_feature 676817..676849 /locus_tag="SEQ_0694" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." gene 678138..680756 /gene="alaS" /locus_tag="SEQ_0695" /db_xref="GeneID:7696129" CDS 678138..680756 /gene="alaS" /locus_tag="SEQ_0695" /EC_number="6.1.1.7" /codon_start=1 /transl_table=11 /product="alanyl-tRNA synthetase" /protein_id="YP_002746045.1" /db_xref="GI:225870098" /db_xref="GeneID:7696129" /translation="MKQLTSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSG VATLKKYFDGSVIPENPRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRD EAIEWGFELLTSPEWFDFPKEKLYMTYYPDDKDSYNRWIALGVEPSHLIPLEENFWEI GAGPSGPDTEIFFDRGEAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRS EYKELPNKNIDTGAGLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNMS FKVIADHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATV GHIMESYYPEILEKRDFIEKIIKREEETFARTIDAGSGHLDQLLAQLKEKGQDRLDGK DIFKLYDTYGFPVELTEELAEDAGYKIDHEGFKAAMKEQQDRARAAAVKGGSMGMQNE TLAGITEPSEFLYETETVASRLSVIIVDNERSEMVSEGQALLVFDQTPFYAEMGGQVA DHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEVLASLALDTVYTLAIDHKRRYAVEKN HTATHLLHAALHKVIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIW KALAITTTETDIETAKAMGAMALFGEKYGKTVRVVQIGDYSVELCGGTHLSNSSEIGL FKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDILKEIAHTLKVPQIEQLPSKVVSLS EQLRDLQKEMAELKEKAAAAQAGDVFKKVQEANGLRYIASEVSVSDAGVLRTFADNWK QRDYSDVLVLAASIGEKVNVLVASKDKRAHAGNLIKALAPIVSGRGGGKPDMAMAGGS DASKLSELLAAVPEHL" misc_feature 678159..679814 /gene="alaS" /locus_tag="SEQ_0695" /inference="protein motif:PFAM:PF01411" /note="HMMPfam hit to PF01411, tRNA synthetases class II (A), score 5.3e-260" misc_feature 678828..678857 /gene="alaS" /locus_tag="SEQ_0695" /inference="protein motif:Prosite:PS00339" /note="PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2." misc_feature 680103..680234 /gene="alaS" /locus_tag="SEQ_0695" /inference="protein motif:PFAM:PF07973" /note="HMMPfam hit to PF07973, Threonyl and Alanyl tRNA synthetase seco, score 5.8e-23" misc_feature 680544..680747 /gene="alaS" /locus_tag="SEQ_0695" /inference="protein motif:PFAM:PF02272" /note="HMMPfam hit to PF02272, DHHA1 domain, score 4.8e-15" gene complement(680879..682042) /locus_tag="SEQ_0696" /db_xref="GeneID:7696130" CDS complement(680879..682042) /locus_tag="SEQ_0696" /codon_start=1 /transl_table=11 /product="DNA/RNA non-specific endonuclease" /protein_id="YP_002746046.1" /db_xref="GI:225870099" /db_xref="GeneID:7696130" /translation="MSQKLGKQLIRSVVTALAAIAFGIFPASETTNHITYAEVNSLTP SVEWPLEQYPNYYSIEGKSNINTKDFPKLYTTTEKVYKKSGRSTKRVTVSDLQYAALD GYGRSGAAYGIITKDMIAMSAGYREKWESNPEPSGWYTYHFKETGKLATEADYLHSKS KIKRTSNNSYESIVLSNGKIRNGYLFDRSHLIADSLGGRPFRNNLITGTRTQNVGNND RKGGMQYIENKVLNYINHNPQVHVYYKAVPIYSGSELLPRAVVVSALSSDGKIDETVR VFNTVNGFTINYQYSGISHDKGMEASSESEAEDITDESTPVAEPADEEAMETEAAAND TIVYVTSNGQSKVYWYNKDHLPEKVNLNKVVEMTEQEALNRGKHHSSLEKINQ" sig_peptide complement(680879..680965) /locus_tag="SEQ_0696" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0696 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.311 between residues 29 and 30" misc_feature complement(681137..681775) /locus_tag="SEQ_0696" /inference="protein motif:PFAM:PF01223" /note="HMMPfam hit to PF01223, DNA/RNA non-specific endonuclease, score 4.5e-31" gene 682464..683750 /locus_tag="SEQ_0697" /db_xref="GeneID:7696131" CDS 682464..683750 /locus_tag="SEQ_0697" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase family protein" /protein_id="YP_002746047.1" /db_xref="GI:225870100" /db_xref="GeneID:7696131" /translation="MKKLNYILIILLSLLLVGVAFTFIRSWKIGQDTQRVIKLEQTAS KDSPKIKKVKYLKKGKQDWYYLSPIEKADDFYVSNLPMSLYQGKQTDKAVIMVKPKLE ASHIKQVNQLVIYKTVYKPQLFGLKKTTEKAVSRYHVKEDYSPFKLEELVAGRLDRIE EEVGKLYPGKEIKLSTDTMIEKNQVLSDGFAIDSGNLILFGHMSIPLASLFDVINPDF LEGSDKTAYEEYLEEKKAKEAEKEGQKLVALTFDDGPDPVTTPQVLDILAKYQAKGTF FMMGSKVVGHEALVKKVSAAGHDVENHSWDHPDLTTLTVDQIQTQINTTNQAIEKACG KRPVYLRPPYGATNDIVRRASGLKEMLWTVDTRDWENRNTAAIMANVKQQLQPGGVVL MHDIHQTSVDALPSIMEYLKAEGYKCVTLSELYGSR" sig_peptide 682464..682547 /locus_tag="SEQ_0697" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0697 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.345 between residues 28 and 29" misc_feature 682476..682544 /locus_tag="SEQ_0697" /inference="protein motif:TMHMM 2.0" /note="1 transmembrane helix predicted for SEQ0697 by TMHMM2.0 at aa 5-27" misc_feature 683181..683543 /locus_tag="SEQ_0697" /inference="protein motif:PFAM:PF01522" /note="HMMPfam hit to PF01522, Polysaccharide deacetylase, score 2.8e-52" gene complement(684015..685109) /locus_tag="SEQ_0698" /db_xref="GeneID:7696132" CDS complement(684015..685109) /locus_tag="SEQ_0698" /codon_start=1 /transl_table=11 /product="RNA helicase" /protein_id="YP_002746048.1" /db_xref="GI:225870101" /db_xref="GeneID:7696132" /translation="MITNLPTQWQEKLAKLGFTNLTPIQEQVFQPIVDGKSLLGISPT GTGKTLAYLWPSLLRLSPKKAQQLLILAPNTELAGQLFEVTKEWAEPLGLTAQLFISG SSQKRQIERLKKGPEIIIGTPGRIFELVRLKKIKMMAINTIILDEYDDLLSDSQYQFV QKLSHYAPRDHQMIYMSATNKIEQASLADHTLVIDLSKQALPCIEHCYMLVDKRHRTD ILRKLANIPDFRGLVFFNSLSDLGATEERLQYSGASVASLASDVNVKQRKAILEAFKE QSISLLLATDIVARGIDIDQLEYVINAEVPRNKEQYTHRAGRTGRMGRSGIVITLVSH PEDIKRLKKFTKVTEMYLKHQQLYQKEIRG" misc_feature complement(684141..684371) /locus_tag="SEQ_0698" /inference="protein motif:PFAM:PF00271" /note="HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 1.5e-25" misc_feature complement(684549..685046) /locus_tag="SEQ_0698" /inference="protein motif:PFAM:PF00270" /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 1.7e-36" gene 685205..685831 /locus_tag="SEQ_0699" /db_xref="GeneID:7696133" CDS 685205..685831 /locus_tag="SEQ_0699" /EC_number="2.7.1.48" /codon_start=1 /transl_table=11 /product="uridine kinase" /protein_id="YP_002746049.1" /db_xref="GI:225870102" /db_xref="GeneID:7696133" /translation="MLKKPIIIGVTGGSGGGKTSVSRAILNSFPNARIAMIQHDSYYK DQSHISFEERVKTNYDHPLAFDTDFMIQQLKELLAGRPVDIPIYDYKEHTRSNRTFRQ EPQDVIIVEGILVLEDERLRELMDIKLFVDTDDDIRIIRRIQRDMVERGRSLESIIEQ YTSVVKPMYHQFIEPSKRYADIVIPEGVSNVVAIDLINTKIASILGEL" misc_feature 685223..685783 /locus_tag="SEQ_0699" /inference="protein motif:PFAM:PF00485" /note="HMMPfam hit to PF00485, Phosphoribulokinase / Uridine kinase family, score 3.7e-54" misc_feature 685238..685261 /locus_tag="SEQ_0699" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene 685821..686126 /locus_tag="SEQ_0700" /db_xref="GeneID:7696134" CDS 685821..686126 /locus_tag="SEQ_0700" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002746050.1" /db_xref="GI:225870103" /db_xref="GeneID:7696134" /translation="MSCSAVIGDRQMLPSLILLFGWNAVVFAAYGSDKHRAQKGQWRL SEKMLLTLSLLCGGIGAYLAGHYFNHKTKKWYFVLSWYMGILMTLVLCYYLYQWYIL" misc_feature join(685857..685916,685959..686027,686046..686114) /locus_tag="SEQ_0700" /inference="protein motif:TMHMM 2.0" /note="3 transmembrane helices predicted for SEQ0700 by TMHMM2.0 at aa 13-32, 47-69 and 76-98" misc_feature 685887..686051 /locus_tag="SEQ_0700" /inference="protein motif:PFAM:PF06961" /note="HMMPfam hit to PF06961, Protein of unknown function (DUF1294), score 7.6e-29" gene complement(686308..687123) /locus_tag="SEQ_0701" /db_xref="GeneID:7696135" CDS complement(686308..687123) /locus_tag="SEQ_0701" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_002746051.1" /db_xref="GI:225870104" /db_xref="GeneID:7696135" /translation="MPLLRYKKIIATTLFMLLVFNGIEYECLNLVSPKQTFYQSAALI LSTSLLGIYLIPFSLAIAYLKRIYQIRISTLLLAGLGGLYISGFLASFGNQVLEQFWI SLIKPNIALEEWTGALTGPFVEEPIKAFAAMLVIYLLPAINLKQKLVISLISGMGFQL TEDISYIASAADRSINDILPTTLARISSSPNSHWVYTGIFTMGAYLLIKKSQLFPRSL QIFWVVSPLALHFIWNSPISDLAGVAVIHGTITTLIFISLFKKIHALDDSIAY" misc_feature complement(join(686347..686415,686500..686553, 686707..686775,686833..686901,686935..687003, 687031..687099)) /locus_tag="SEQ_0701" /inference="protein motif:TMHMM 2.0" /note="6 transmembrane helices predicted for SEQ0701 by TMHMM2.0 at aa 9-31, 41-63, 75-97, 117-139, 191-208 and 237-259" gene 687258..687755 /locus_tag="SEQ_0702" /db_xref="GeneID:7696136" CDS 687258..687755 /locus_tag="SEQ_0702" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002746052.1" /db_xref="GI:225870105" /db_xref="GeneID:7696136" /translation="MNKTTKIEHYQLLLAQAKALFSNESNALANLSNASALLKMTLPH SVFAGFYLFDGQELILGPFQGKVSCVHIKLGKGVCGESAQSGQTIIVDDVKKHANYIS CDSAAMSEIVVPMLKAGRLVGVLDLDSSLVADYDQIDQDYLEQFVALLLENTSFRFDM FGVEN" gene 687755..689431 /locus_tag="SEQ_0703" /db_xref="GeneID:7696137" CDS 687755..689431 /locus_tag="SEQ_0703" /EC_number="2.7.7.7" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit gamma/tau" /protein_id="YP_002746053.1" /db_xref="GI:225870106" /db_xref="GeneID:7696137" /translation="MYQALYRKYRSQTFAEMVGQSVISTTLKQAVESEKISHAYLFSG PRGTGKTSAAKIFAKAMNCPNQVKGEPCNHCDICRDITTGSLEDVIEIDAASNNGVDE IRDIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHK IPATILSRVQRFEFKAIKQPAICEHLAAILDKEGIAYEIEALHLIARRAEGGMRDALS ILDQALSLSFDNRVTLAIAEEITGSISISALDDYVQHLIRQKTSQALANLETIYDSGK SMSRFATDLLTYFRDLLIVKSGGDHHRQSALFDDNLAVSFDQLFTMIATVTKHLPEIK KGTHPRIYAEMMTIQLAEQGQAADTAIPSSLLADVDDLKHEISQLRETISQLQAQKGL TAQATPAHSIKPKAFTYKVDREKILKIMEETVQDSQQSRQYLEALKSAWNEILDSISA QDRALLLGSEPVLANSENAILAFEAAFNAEQAMKRQDLNDMFGNIMSKAAGFSPHILA VPKADFHHIRSEFAMTIKTKKETAKESEQATFDMPEGFDFLTDKIHLIED" misc_feature 687869..688441 /locus_tag="SEQ_0703" /inference="protein motif:PFAM:PF00004" /note="HMMPfam hit to PF00004, ATPase family associated with various cellul, score 9.3e-11" misc_feature 687884..687907 /locus_tag="SEQ_0703" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." gene complement(689990..690931) /locus_tag="SEQ_0704" /db_xref="GeneID:7696138" CDS complement(689990..690931) /locus_tag="SEQ_0704" /EC_number="6.3.4.15" /codon_start=1 /transl_table=11 /product="BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase]" /protein_id="YP_002746054.1" /db_xref="GI:225870107" /db_xref="GeneID:7696138" /translation="MKTSEKIYQLLACSDDYVSGEYLAEQLKLSRTSVWKSIKSLESQ GLHIESLKHKGYRLIQGDILLPELISQELNMPLSYHEKSQSTQLDAKQGIELKHTAPR LYLAPSQYAAKGRLNRQFFASPHGGIYMSLHLKPNVPYADMPPYTMMVASSIVKAISR LTGIDTQIKWVNDIYLGHKKIAGILTEAITSVETGVITDVIIGVGLNFFVTEFSENLK ERAGSLFSNKPSITRNALIIDIWKLFTTIPIKDHIKVYKEKSLVLQKQVSFQENDRQK TATAIDLTDEGHLIVQLDNGQLQVLRSGEISLSSWGD" misc_feature complement(690005..690148) /locus_tag="SEQ_0704" /inference="protein motif:PFAM:PF02237" /note="HMMPfam hit to PF02237, Biotin protein ligase C terminal domain, score 1.7e-09" misc_feature complement(690401..690697) /locus_tag="SEQ_0704" /inference="protein motif:PFAM:PF03099" /note="HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase famil, score 0.0025" misc_feature complement(690761..690928) /locus_tag="SEQ_0704" /inference="protein motif:PFAM:PF08279" /note="HMMPfam hit to PF08279, HTH domain, score 4.4e-16" misc_feature complement(690815..690880) /locus_tag="SEQ_0704" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1186.000, SD 3.23 at aa 18-39, sequence VSGEYLAEQLKLSRTSVWKSIK" gene 691458..693677 /locus_tag="SEQ_0705" /db_xref="GeneID:7696139" CDS 691458..693677 /locus_tag="SEQ_0705" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_002746055.1" /db_xref="GI:225870108" /db_xref="GeneID:7696139" /translation="MKSKKLMLMASLFMACHLTLTACQSTKQPTNQPKTKQTAKKATK KKQSKKVKQTRKDRKGVAGIDFPTDDGFILTKDSKILSRTENGIVVEHNGHSHFIFYA DLKGSKFEYLIPKDADLNKPEQTKAASGHHHTSANDPHHHYVFNPADIVAEDALGYIV RHGDHYHYILKSSLGGQVAYPVPNHVPLSAPSSPSGKFAGVDYPTSDGFLFDGTGIVG RTSYGLIVDHNGHNHLVTYESLRNSKWKHLIEQPKEEAPAKPQSDLEKTIALKKAYLA KSLNIPEDSIRVEHTEEGIILDYPHGDHRHATYIDDIDLSKPFDPHAVDPHAKDRIGM ATLRKLGFDEEVISSIIHANAPTEFPSRERDLEKMKAWLATVEYLNIGEIKDPLKRAG LNLMPNIQILGIGFTPITDITPVYQFKNLKQLWMTQTGIKNYDFLKNLPTLEGIDISQ NGVSDLSFLKAFPHYKVISAAGNDITDISILKELPNLESVNLDFNKITDLSALANAQK LVAVSLEHNQIKDLSALSNKGQLTKLFVSNNPDLDLSTLKSSALKEITAKEVNLQSLS FVKDLPALEQLVVDQNKLNSLTGLEHNKSLIQLSANQNMINSLALPGTQSSLQSLNLE ENQLTNFEGVNNYLALEAINVNRNKINTLALKEPNQTLKYIQADGNHFPAEELAAESG QFPQGIIKNFKAAEGGSLNNATPAEAVEDEHKPADTDQEAADKHDHEHHDHDEHHHG" sig_peptide 691458..691580 /locus_tag="SEQ_0705" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0705 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.547 between residues 41 and 42" misc_feature 691473..691505 /locus_tag="SEQ_0705" /inference="protein motif:Prosite:PS00013" /note="PS00013 Prokaryotic membrane lipoprotein lipid attachment site." misc_feature 691653..691820 /locus_tag="SEQ_0705" /inference="protein motif:PFAM:PF04270" /note="HMMPfam hit to PF04270, Streptococcal histidine triad protein, score 0.034" misc_feature 691884..692009 /locus_tag="SEQ_0705" /inference="protein motif:PFAM:PF04270" /note="HMMPfam hit to PF04270, Streptococcal histidine triad protein, score 0.00026" misc_feature 692064..692210 /locus_tag="SEQ_0705" /inference="protein motif:PFAM:PF04270" /note="HMMPfam hit to PF04270, Streptococcal histidine triad protein, score 0.016" misc_feature 692913..692975 /locus_tag="SEQ_0705" /inference="protein motif:PFAM:PF00560" /note="HMMPfam hit to PF00560, Leucine Rich Repeat, score 2" misc_feature 693306..693368 /locus_tag="SEQ_0705" /inference="protein motif:PFAM:PF00560" /note="HMMPfam hit to PF00560, Leucine Rich Repeat, score 7" gene 694010..695215 /locus_tag="SEQ_0706" /db_xref="GeneID:7696140" CDS 694010..695215 /locus_tag="SEQ_0706" /EC_number="2.5.1.6" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine synthetase" /protein_id="YP_002746056.1" /db_xref="GI:225870109" /db_xref="GeneID:7696140" /translation="MSERKLFTSESVSEGHPDKIADQISDAILDAILAKDPEAHVAAE TCVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSP DIAQGVNEALEAREGQSDDFNAIGAGDQGLMFGFAIDETPELMPLPISLSHQLVRRLA TLRKSGEISYLRPDAKSQVTVEYDEHDKPVRVDTVVISTQHDPEVSNDQIRQDMIEQV IKAVIPAHYLDEKTRFLINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSG KDATKVDRSASYAARYIAKNLVAAGLASKAEVQLAYAIGVAQPVSVRVDTFGTSTVSE SILEAAVRQVFDLRPAGIIKMLDLKRPIYRQTAAYGHMGRTDIDLPWEQLDKVSPLTE AVAALSEGA" misc_feature 694016..694315 /locus_tag="SEQ_0706" /inference="protein motif:PFAM:PF00438" /note="HMMPfam hit to PF00438, S-adenosylmethionine synthetase, N-te, score 2.4e-48" misc_feature 694376..694735 /locus_tag="SEQ_0706" /inference="protein motif:PFAM:PF02772" /note="HMMPfam hit to PF02772, S-adenosylmethionine synthetase, cent, score 1e-78" misc_feature 694385..694417 /locus_tag="SEQ_0706" /inference="protein motif:Prosite:PS00376" /note="PS00376 S-adenosylmethionine synthetase signature 1." misc_feature 694739..695158 /locus_tag="SEQ_0706" /inference="protein motif:PFAM:PF02773" /note="HMMPfam hit to PF02773, S-adenosylmethionine synthetase, C-te, score 1.5e-82" misc_feature 694817..694843 /locus_tag="SEQ_0706" /inference="protein motif:Prosite:PS00377" /note="PS00377 S-adenosylmethionine synthetase signature 2." gene 695531..696790 /locus_tag="SEQ_0707" /db_xref="GeneID:7696141" CDS 695531..696790 /locus_tag="SEQ_0707" /EC_number="2.5.1.7" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2" /protein_id="YP_002746057.1" /db_xref="GI:225870110" /db_xref="GeneID:7696141" /translation="MRKIIINGGKALSGEVAVSGAKNSVVALIPAIILADDVVTLDGV PAISDVDSLIEIMKLMGAMVTYQGDTLEIDPRGVQDIPMPYGKINSLRASYYFYGSLL GRFGQAVVGLPGGCDLGPRPIDLHLKAFEAMGAQISYEGASMHLMTEAQQLHGAHIYM DTISVGATINTMIAATKAKGKTIIENAAREPEIIDVATLLNNMGAHIRGAGTDVITIE GVERLHGTRHQVIPDRIEAGTYIALAAAVGSGVRITNVLYEHLESFIAKLEEMGVRMT VEEDSIFVEKQEALKAVTIKTSPYPGFATDLQQPLTPLLLRTEGRGSIIDTIYEKRVN HVPELARMGADIAILGSQIVYHGSNRLSGAQVKATDLRAGAALVIAGLMAQGKTEISN IEFILRGYANIIDKLTALGADIQLIED" misc_feature 695546..696751 /locus_tag="SEQ_0707" /inference="protein motif:PFAM:PF00275" /note="HMMPfam hit to PF00275, EPSP synthase (3-phosphoshikimate 1-car, score 1.2e-100" misc_feature 696053..696076 /locus_tag="SEQ_0707" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." misc_feature 696671..696694 /locus_tag="SEQ_0707" /inference="protein motif:Prosite:PS00017" /note="PS00017 ATP/GTP-binding site motif A (P-loop)." repeat_region complement(696914..698342) /note="ISSeq3" repeat_region 696922..696933 /note="perfect inverted repeat flanking IS element" gene complement(696946..697749) /locus_tag="SEQ_0709" /db_xref="GeneID:7696142" CDS complement(696946..697749) /locus_tag="SEQ_0709" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_002746058.1" /db_xref="GI:225870111" /db_xref="GeneID:7696142" /translation="MLEILDLSRSTYYYQVKQLAQEDKDMDLKELIQGIYDEHHGNYG YRRIHLELRNRGFIVNHKKVQRLMTVMGLKARIRRKRKYSSYKGEVGKKADNLIKRQF EGSKPYEKCYTDVTEFTLPEGKLYLSPVLDGYNSEIIDFTLSRSPDLKQVQTMLEKAF PADSYNGTILHSDQGWQYQHQSYHHFLETKGIRPSMSRKGNSPDNGMMESFFGILKSE MFYGLETTYQSLNELEQAITDYIFYYNNKRIKAKLKGLSPVQYRTKSFH" misc_feature complement(696961..697443) /locus_tag="SEQ_0709" /inference="protein motif:PFAM:PF00665" /note="HMMPfam hit to PF00665, Integrase core domain, score 1.1e-37" gene complement(697773..698288) /locus_tag="SEQ_0710" /db_xref="GeneID:7696143" CDS complement(697773..698288) /locus_tag="SEQ_0710" /codon_start=1 /transl_table=11 /product="insertion element DNA-binding protein" /protein_id="YP_002746059.1" /db_xref="GI:225870112" /db_xref="GeneID:7696143" /translation="MTLSYEDKVQIYELRHIGKSIKCLSEKFSIAESDLKYMIRLIDR YGLAIVQKGKNSYYSPELKQEIIDKVLIDGQSQKQTSLDYALPNSSMLSRWIAQYKKN GYTILEKRRGRPPKMGRQPKKTLEQMTELERLQKELDYLRAENAVLKKLREYRLRDEA KLKEQQKSSKN" misc_feature complement(697845..698126) /locus_tag="SEQ_0710" /inference="protein motif:PFAM:PF01527" /note="HMMPfam hit to PF01527, Transposase, score 0.00062" misc_feature complement(697929..697967) /locus_tag="SEQ_0710" /inference="protein motif:PFAM:PF02178" /note="HMMPfam hit to PF02178, no description, score 0.21" misc_feature complement(698169..698234) /locus_tag="SEQ_0710" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 19-40, sequence KSIKCLSEKFSIAESDLKYMIR" repeat_region complement(698323..698334) /note="perfect inverted repeat flanking IS element" gene 698649..700193 /locus_tag="SEQ_0711" /db_xref="GeneID:7696144" CDS 698649..700193 /locus_tag="SEQ_0711" /codon_start=1 /transl_table=11 /product="sugar transporter" /protein_id="YP_002746060.1" /db_xref="GI:225870113" /db_xref="GeneID:7696144" /translation="MEKTIDQRVEEVTYNRAKVWQLVLFALNNASTNIYLFTFMFVTY FSTGVLGLAAIFVSQIMGYIRIFDGFIDPAIGILIDKTETKFGKYRPILIIGNIITAL SLILLLGLSGVSENIRFPLFILVLIIHKIGYSMQQTITKAGQTALTNDPKQRPIFNIV DAIMTTLLMTGGQFVVSSFLVPKFGNFTPAFFHVLIYGTIVISAILGLLAVLGIWSKD RKEFFGLGENTQKTALKDYLKVIKGNQPLQVLSIAAALVKFAVQFFGDSVVMVILFGV LFGNYALSGQFSLLFIVPGILINIAFSGIARKRGLRFSYIRALQIGLVGLLAFGIVLF MGNKGDLSLSHINLYTILFTVTLIIARYASQAPASLVLTMGADISDYETSESGRYVSG MIGTIFSLTDSIASSFAPMVIGAVLAGIGFSKTYPTIETPLTPSLKMALIALHVGIPF VALLVALILMSFYKLDKEEMVRIQEKIQVMKASSDKERVQAIAKNVPLSDMDYVDVTK YPVDKD" misc_feature join(698748..698816,698919..698987,698997..699050, 699111..699179,699222..699290,699411..699479, 699507..699566,699585..699653,699681..699740, 699858..699926,699969..700037) /locus_tag="SEQ_0711" /inference="protein motif:TMHMM 2.0" /note="11 transmembrane helices predicted for SEQ0711 by TMHMM2.0 at aa 34-56, 91-113, 117-134, 155-177, 192-214, 255-277, 287-306, 313-335, 345-364, 404-426 and 441-463" gene 700277..701305 /locus_tag="SEQ_0712" /db_xref="GeneID:7696145" CDS 700277..701305 /locus_tag="SEQ_0712" /codon_start=1 /transl_table=11 /product="PfkB family carbohydrate kinase" /protein_id="YP_002746061.1" /db_xref="GI:225870114" /db_xref="GeneID:7696145" /translation="MKKVVSLGEILLRLSPPQYQTLKQATSLDCQFGGSELNVISSLA QLGHQVSLISAIPDNDLGQMTKTFLFSRQINQEHIIEKGQRLGLYYYQKGFSLRASRV TYDRCHSAFWESKRADYDLEHVFDEADWFHVSGITPALTSDLYELTYYLMTKARAEGL TISFDLNFRASLWSSFQEARDLLSPLVQLADVCIGIEPLTLKGSGALDLKDQLGLNRP YDDEALLKEVLARLADTYGVKCFAFTQREMDYTNEYLLKAYLYQNGSLYKTQKSGIQV LDRVGTGDAFTAGLIHGLLSYKDEQATLDVAMASFKFKHTIEGDSNIMTQDDIDHLLA KESHEIQR" misc_feature 700277..701254 /locus_tag="SEQ_0712" /inference="protein motif:PFAM:PF00294" /note="HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 3.4e-16" gene 701326..703116 /locus_tag="SEQ_0713" /db_xref="GeneID:7696146" CDS 701326..703116 /locus_tag="SEQ_0713" /EC_number="3.2.1.31" /codon_start=1 /transl_table=11 /product="beta-glucuronidase" /protein_id="YP_002746062.1" /db_xref="GI:225870115" /db_xref="GeneID:7696146" /translation="MLYPILTKTRKIYDLGGLWQFKLGDHNPQELLASDELMVVPTSF NDVVVDKDKRNYIGDFWYERFVDVPDLAADEELVLRFGSVTHNATVYVNGQALGQHKG GFTPFEVLVPETHYQDNQIKVSVCANNILDYTSLPVGNYSEETQEDGSIKKIVKENFD FFNYAGIHRPVKLMVRPKCHISDITITSDLSEDMTSALVEVSVETSAAVDEVKVTIFD EEHKLVAQAIDGKARLDKVRLWEVLDAYLYTAHVEIIVDGNVVDSYDEPFGIRSIAVE KGQFLLNGKPVYFKGFGKHEDTFINGRGLNEAANLMDMNLLKELGANSFRTSHYPYSE EMMRLADRMGILVIDEVPAVGLFQNFTASLDLSPKDNGTWSVMKTKEAHEQAIRELVK RDKNHPSVVMWVVANEPASHEEGAHEYFEPLIALYKALDPQQRPVTLVNLLLATPDRD KVMDLVDVISLNRYYAWYVDHGDLIKGEVGLRQELLEWQKKFPNKPILMTEYGADTLP GLHSMWDIPYTEEFQCRFYEMSHRVFDEIPNLVGEQVWNFADFETNLMIFRIQGNHKG LFSRNRQPKHVVGLFKERWNTIPHYNYKKK" misc_feature 701350..701856 /locus_tag="SEQ_0713" /inference="protein motif:PFAM:PF02837" /note="HMMPfam hit to PF02837, Glycosyl hydrolases family 2, sugar b, score 4.7e-42" misc_feature 701860..702138 /locus_tag="SEQ_0713" /inference="protein motif:PFAM:PF00703" /note="HMMPfam hit to PF00703, Glycosyl hydrolases family 2, immunog, score 2.3e-12" misc_feature 702142..703095 /locus_tag="SEQ_0713" /inference="protein motif:PFAM:PF02836" /note="HMMPfam hit to PF02836, Glycosyl hydrolases family 2, TIM bar, score 4.8e-93" misc_feature 702292..702369 /locus_tag="SEQ_0713" /inference="protein motif:Prosite:PS00719" /note="PS00719 Glycosyl hydrolases family 2 signature 1." gene 703158..703829 /locus_tag="SEQ_0714" /db_xref="GeneID:7696147" CDS 703158..703829 /locus_tag="SEQ_0714" /codon_start=1 /transl_table=11 /product="GntR family regulatory protein" /protein_id="YP_002746063.1" /db_xref="GI:225870116" /db_xref="GeneID:7696147" /translation="MARPLVEKTAERLLKLILERGYEVGAKLPNEYELAQDLEVGRST IREAVRSLATRNVLEVRQGSGTYISSKKGVSEDPLGFSLVKDTAKLTADLFELRLLLE PRIAALTAQHATPKEVEALEKLVVDIEEAVAAGDPKHLQLDVNFHSLMAKYSGNIAMD SLLPVINQSIHLINANYTNRQMKEDSLQAHRDILNAIKAGDPIAAHDAMLLHIMTVKR TAFLS" misc_feature 703170..703361 /locus_tag="SEQ_0714" /inference="protein motif:PFAM:PF00392" /note="HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 2.5e-18" misc_feature 703239..703313 /locus_tag="SEQ_0714" /inference="protein motif:Prosite:PS00043" /note="PS00043 Bacterial regulatory proteins, gntR family signature." misc_feature 703242..703307 /locus_tag="SEQ_0714" /inference="protein motif:helixturnhelix:EMBOSS" /note="Predicted helix-turn-helix motif with score 1121.000, SD 3.00 at aa 29-50, sequence PNEYELAQDLEVGRSTIREAVR" misc_feature 703434..703802 /locus_tag="SEQ_0714" /inference="protein motif:PFAM:PF07729" /note="HMMPfam hit to PF07729, FCD domain, score 2.4e-31" gene 703961..704629 /locus_tag="SEQ_0715" /db_xref="GeneID:7696148" CDS 703961..704629 /locus_tag="SEQ_0715" /EC_number="4.1.2.21" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxy-6-phosphogalactonate aldolase" /protein_id="YP_002746064.1" /db_xref="GI:225870117" /db_xref="GeneID:7696148" /translation="MIYIIKLRQRFHEKEEPMLNRLKENYFFAIIRGKTVEDAIAIAK HAILGGIRNIEITYSTPNASEVIRILSAEFEHDDAVIIGAGTVMTPDLAREAIAAGAS FLVSPHFSREIAEVANQASNLYFPGCATATEIVTAMNASCPIIKVFPGGVVGPGFIKD IHGPIPEVDLMPSGGVSIDNVKEWKNAGAVAVGIGSALASRVEAEGYDSVTRIAASFV SALD" misc_feature 704012..704599 /locus_tag="SEQ_0715" /inference="protein motif:PFAM:PF01081" /note="HMMPfam hit to PF01081, KDPG and KHG aldolase, score 2.9e-31" gene 704657..706054 /locus_tag="SEQ_0716" /db_xref="GeneID:7696149" CDS 704657..706054 /locus_tag="SEQ_0716" /EC_number="5.3.1.12" /codon_start=1 /transl_table=11 /product="uronate isomerase" /protein_id="YP_002746065.1" /db_xref="GI:225870118" /db_xref="GeneID:7696149" /translation="MAFNDDNFMLKNEAAKRLYQQIKDQPIFDYHCHLDPKEIFEDKV YDNIVDLWLGGDHYKWRLMRANGISEEEITGSASKLDKFKAFARTLQRSYGNPVYHWS VMELKNVFGVCELLTEDNAEEIYHRINAYLVEHQISPRKLIADSRVRFIGTTDHPLDD LAWHKRLAADDTFETVVAPTFRPDEAFIEHQRFADFVARLAQATGRTITDFKSFIAAM EERIAYFAENGCKASDISFTEIVFEAAEPEQLDRLMTRVLEGYQPQPLEVKQWQTAVF AELCRLYKHYGFVTQVHFGALRNNHSAIFNKLGADVGVDSLGDQTGLAINMNRLLDHL VQRDSLPKMIWYNLNPSYNIAVANTLANFQANENGIAGYLQFGAGWWFADTKLGMISQ MNALAEQGLLANFVGMLTDSRSFLSYQRHDYFRRILSTYLGEWIEEGEVPEDYQALGK MAQDIAYNNAIQYFN" misc_feature 704657..706051 /locus_tag="SEQ_0716" /inference="protein motif:PFAM:PF02614" /note="HMMPfam hit to PF02614, Glucuronate isomerase, score 1.2e-165" gene 706265..707410 /locus_tag="SEQ_0717" /db_xref="GeneID:7696150" CDS 706265..707410 /locus_tag="SEQ_0717" /EC_number="4.2.1.8" /codon_start=1 /transl_table=11 /product="mannonate dehydratase" /protein_id="YP_002746066.1" /db_xref="GI:225870119" /db_xref="GeneID:7696150" /translation="MCESKGKGVYENSRYDTMKMSFRWYGKHDPVSLEEIKAIPGMQG IVTAVYDVPVGQAWPLENILELKRIVEAAGLEISVIESIPVHEDIKQGKPNRDELIEN YKTSIINVGKAGIPVVCYNFMPVFDWTRSDLNYPLPDGSTSLAFLKADLADVDPVADD LNLPGWDFSYSKEEMKAIIEHYRHHISEEDLWANLDYFIKAIMPTAEAAGVKMAIHPD DPPYGIFGLPRIITGQKAVERFLDLYDSPNNGITMCVGSYASDPQNDVIAMTEYALKR QRINFMHTRNVTAGDWGFQETAHLSQAGDIDMNAIIKLLVDYDWQGPLRPDHGRRIWG DQTKTPGYGLYDRALGATYFNGLYEANMRAAGKIPDFGITVKTVGDK" misc_feature 706316..707353 /locus_tag="SEQ_0717" /inference="protein motif:PFAM:PF03786" /note="HMMPfam hit to PF03786, D-mannonate dehydratase (UxuA), score 9.7e-183" gene 707426..708265 /locus_tag="SEQ_0718" /db_xref="GeneID:7696151" CDS 707426..708265 /locus_tag="SEQ_0718" /EC_number="1.1.1.125" /codon_start=1 /transl_table=11 /product="2-deoxy-D-gluconate 3-dehydrogenase" /protein_id="YP_002746067.1" /db_xref="GI:225870120" /db_xref="GeneID:7696151" /translation="MSRVIEFKDKVVVITGAGGVLCGSMAKAFAKAGAKVALLDLNQE AAQAFVDDIEAEGGIAKAYQANVLSKENLEAVRQAVLADFGPADILVNGAGGNSPKAT TDNEFHDTSLPEDTKTFFDLDEAGISFVFNLNYLGTLLPTQVFAQDMVGRKGANIINI SSMNAFTPLTKIPAYSGAKAAISNFTQWLAVHFSKVGIRCNAIAPGFLVTNQNRSLLF TEDGQPTARAEKILKNTPMGRFGEAEELIGGLFFLADEQSASFVNGVVLPIDGGFAAY SGV" sig_peptide 707426..707515 /locus_tag="SEQ_0718" /inference="protein motif:SignalP:2.0" /note="Signal peptide predicted for SEQ0718 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.910 between residues 30 and 31" misc_feature 707453..708007 /locus_tag="SEQ_0718" /inference="protein motif:PFAM:PF00106" /note="HMMPfam hit to PF00106, short chain dehydrogenase, score 2.8e-10" misc_feature 707909..707995 /locus_tag="SEQ_0718" /inference="protein motif:Prosite:PS00061" /note="PS00061 Short-chain dehydrogenases/reductases family signature." gene 708529..709332 /locus_tag="SEQ_0719" /db_xref="GeneID:7696152" CDS 708529..709332 /locus_tag="SEQ_0719" /codon_start=1 /transl_table=11 /product="haloacid dehalogenase-like hydrolase" /protein_id="YP_002746068.1" /db_xref="GI:225870121" /db_xref="GeneID:7696152" /translation="MTAKTEQFVFCVDSDGCAMDTMTYKHQLFFGPLAADYFAVADQA SFLKEWDRINLYSRTRGVNRFVGLVMGLEYAGVTGIDALKQWVQHTASLSNQSLEAEL LKRPSDDLQKALDWSNEVNRQIEAYKGEALAFLGALAALKALHQLGQVFVVSSANKEA VQKEWQDQGLMTHVDGLYCQDRGKKEAVIAQLIDEGYVRERMMMIGDSPGDLAAAEQN QITFFPILVGKEASSWQDLSHAAEAFTTGDLTELDVKSLTEAFWRNLDR" misc_feature 708568..709212 /locus_tag="SEQ_0719" /inference="protein motif:PFAM:PF00702" /note="HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 0.00022" gene 709447..711237 /locus_tag="SEQ_0720" /db_xref="GeneID:7696153" CDS 709447..711237 /locus_tag="SEQ_0720" /codon_start=1 /transl_table=11 /product="glycosyl hydrolase family protein" /protein_id="YP_002746069.1" /db_xref="GI:225870122" /db_xref="GeneID:7696153" /translation="MTHLVDLRKKPYSLDEEAICWVEDTIAAMTLEEKIGQLFVNMGA SRSEDYLTQVLEDYHIAAVRYNKGMASEIWDQNYILQTKSKIPMLIAANTEAGGDGAV NDGTKVGDEIKVAATNDPKYAYEMGRIAGLEASAVGCNASFAPIVDLTRNWRNPIIAN RNWGVNVDQIIELSKEYMKGIMEYGIMPFAKHFPGDGIDERDHHLSFASNPMTKEEWL SSFGRIYGELAEAGLPGIMAGHIHLPNVEKAMHPERELDDMLPASLNKTLLDELLRGE LGYNGAIVTDASHMVAMTASMPRRLLLPTAIEAGCDLFLFFNDPDEDLQWMKEGYEAG ILSDERLHDALRRTLGLKAKLGLHRFEGHREDIMLPKDKAMVLINTPEAQAIADEVAD KAITLVKNKQAGIFPVTPERYKRVLIVNVEGYKGGFGAMIAGQKKRASDIVKELLEAR GHEVTVWESTEERIMQLPEEERAAAIANVYAQKQPISNITEHYDLILNLVDVNSGGTV QRIIWPAAKGTPDQPFYVHEVPTIVVSVQHAFALADMPQVGTYINAYDGKDNTMKALV AKLAGESEFTGVSPVDAFCGLIDTQLWHSF" misc_feature 709678..710394 /locus_tag="SEQ_0720"