LOCUS NC_012417 3125 bp DNA circular BCT 07-MAY-2009 DEFINITION Staphylococcus aureus subsp. aureus USA300_TCH1516 plasmid pUSA01-HOU, complete sequence. ACCESSION NC_012417 VERSION NC_012417.1 GI:225631039 DBLINK Project:19489 KEYWORDS . SOURCE Staphylococcus aureus subsp. aureus USA300_TCH1516 ORGANISM Staphylococcus aureus subsp. aureus USA300_TCH1516 Bacteria; Firmicutes; Bacillales; Staphylococcus. REFERENCE 1 (bases 1 to 3125) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-MAR-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 3125) AUTHORS Highlander,S.K., Hulten,K.G., Qin,X., Jiang,H., Yerrapragada,S., Mason,E.O., Shang,Y., Williams,T.M., Fortunov,R.M., Liu,Y., Igboeli,O., Petrosino,J., Tirumalai,M., Uzman,A., Fox,G.E., Cardenas,A.M., Muzny,D.M., Hemphill,L., Ding,Y., Dugan,S., Blyth,P.R., Buhay,C.J., Dinh,H.H., Hawes,A.C., Holder,M., Kovar,C.L., Lee,S.L., Liu,W., Nazareth,L.V., Wang,Q., Zhou,J., Kaplan,S.L. and Weinstock,G.M. TITLE Direct Submission JOURNAL Submitted (19-MAR-2009) Molecular Virology and Microbiology and the Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001544. DNA and bacteria are available from: Sarah K. Highlander, Ph.D., Associate Professor, Baylor College of Medicine, One Baylor Plaza, MS280, Houston, TX 77030, 713-798-6311. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3125 /organism="Staphylococcus aureus subsp. aureus USA300_TCH1516" /mol_type="genomic DNA" /strain="TCH1516" /sub_species="aureus" /db_xref="taxon:451516" /plasmid="pUSA01-HOU" /note="derived from methicillin-resistant clonal population USA300" gene 1..996 /gene="repA" /locus_tag="USA300HOU_pUSA10HOUMR0001" /db_xref="GeneID:7670069" CDS 1..996 /gene="repA" /locus_tag="USA300HOU_pUSA10HOUMR0001" /codon_start=1 /transl_table=11 /product="replication initiation protein" /protein_id="YP_002727814.1" /db_xref="GI:225631040" /db_xref="GeneID:7670069" /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADIL EILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQK VIEKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFM RSTEVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVAN VKAIKPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSY GGLLKQKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH" gene 1348..1464 /locus_tag="USA300HOU_pUSA10HOUMR0002" /db_xref="GeneID:7670064" CDS 1348..1464 /locus_tag="USA300HOU_pUSA10HOUMR0002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002727815.1" /db_xref="GI:225631041" /db_xref="GeneID:7670064" /translation="MGSVKKLVTGFAEIFVCEITIYLFGSYLRFKSLYIFLS" gene 1579..1767 /locus_tag="USA300HOU_pUSA10HOUMR0003" /db_xref="GeneID:7670065" CDS 1579..1767 /locus_tag="USA300HOU_pUSA10HOUMR0003" /codon_start=1 /transl_table=11 /product="possible membrane protein" /protein_id="YP_002727816.1" /db_xref="GI:225631042" /db_xref="GeneID:7670065" /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILM GINAIYLVVKVMNFKKNN" gene 1801..1923 /locus_tag="USA300HOU_pUSA10HOUMR0004" /db_xref="GeneID:7670066" CDS 1801..1923 /locus_tag="USA300HOU_pUSA10HOUMR0004" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002727817.1" /db_xref="GI:225631043" /db_xref="GeneID:7670066" /translation="MFSHCFFIPIGVVAYFLFFYKDDAFDEMEEKYDYHEDNKK" gene complement(2093..2674) /locus_tag="USA300HOU_pUSA10HOUMR0005" /db_xref="GeneID:7670067" CDS complement(2093..2674) /locus_tag="USA300HOU_pUSA10HOUMR0005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002727818.1" /db_xref="GI:225631044" /db_xref="GeneID:7670067" /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIA DKNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDI ENKKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVA KKLAKIGIKGNLAGIAATMVSKDVQCNLKYGLL" gene 2749..2922 /locus_tag="USA300HOU_pUSA10HOUMR0006" /db_xref="GeneID:7670068" CDS 2749..2922 /locus_tag="USA300HOU_pUSA10HOUMR0006" /codon_start=1 /transl_table=11 /product="possible membrane protein" /protein_id="YP_002727819.1" /db_xref="GI:225631045" /db_xref="GeneID:7670068" /translation="MNKFFYFLIILLSVFLIFNFVNSILFDNPFDFLESFIYSLVFTL IYLGLEGHKKKKE" ORIGIN 1 atgcaatata atactactag aagtataacc gaaaatcaag ataataaaac gttaaaagat 61 atgacgaaaa gtgggaaaca acgcccatgg agagaaaaga aaatagataa tgtaagctat 121 gcagatatac tagaaatttt aaaaatcaaa aaggctttta atgtaaaaca atgtggtaat 181 attttagaat ttaagccaac tgatgaaggc tatttgaagt tacataagac atggttttgt 241 aaatcaaaat tatgtccggt ttgtaattgg agacgtgcta tgaaaaatag ttatcaagct 301 caaaaagtga ttgaaaaagt aattaaggaa aagccaaaag cacgttggtt gtttttaaca 361 ctttcaacaa aaaatgcgat agatggagat actttagaac aaagtttgaa gcatctaact 421 aaagcatttg ataggttgag tagatataaa aaggttaaac aaaatcttgt tggatttatg 481 cgttcaacag aagttaccgt taataaaaat gacggtagtt ataatcagca catgcatgtt 541 ttgttatgtg ttgaaaatgc atattttaga aaaaaagaga attatataac tcaagaagaa 601 tgggttaatt tatggcaaag agcattacaa gttgactatc gacctgttgc taatgttaaa 661 gcgatcaaac cgaatagaaa aggcgataaa gacattgaat cggcaatcaa agagacctca 721 aaatattcgg ttaaatcatc tgatttttta actgatgatg atgaaaaaaa tcaagaaatt 781 gtaagtgatt tagaaaaagg tttgtatcga aaacgtatgt taagttatgg tggattgctt 841 aaacaaaaac ataaaatttt aaacttagac gatgtcgaag atggtaattt gattaatgca 901 agtgatgaag ataaaacaac agacgaagaa gaaaaagcac attcaattac cgcaatttgg 961 aatttcgaaa agcaaaatta ttatttaaga cattagtgtt gactaatgtc ttttttgttg 1021 attttttata aaaaagtact gtcttatttt tgtgacaaat gctgtatgta gtgtcacaaa 1081 aataagacaa acgcaatata ttgtgtcaca aaaataagac agtacagctt tgtatgatat 1141 cactttaaaa taccttaaaa cccctggaat ttctggcttt gccagaccta tcatttttga 1201 atgatagcaa attctcctta tgctcttacg gagtttttag agaaaaatta aaaattctcg 1261 atttttgata aaaaacgccc tgcaggaatt tagaaaaaca tgtggaagtt ttaaaggatt 1321 ttatgctaat ttttaatttg catgtaaatg ggcagtgtta aaaaattagt cactggtttt 1381 gctgaaattt ttgtttgtga aattaccata tatttatttg gctcatattt gcgttttaag 1441 agcttgtata tatttttaag ttaaaaacct atatgatacc ccctaaacct ttaaaatacc 1501 cccttaaaac tcaaaataaa ggtatttata atttgagtaa gtcttgtgat aaagtttttt 1561 aaaaaaggag tgtttatttt gaataaaaac acagtgttag atgaaggtta cgttatagca 1621 actattttaa atgttttctt tttacttgga ttaattttta tatctcattt ggaaaattta 1681 tatatattaa ttccgtatgt tattttgatg ggaataaatg ctatttattt ggttgttaag 1741 gttatgaatt tcaaaaagaa taattagaat atttgagggg attttgaaac gagtttcttc 1801 ttgttttcac actgtttttt tattcctatt ggtgttgttg cttacttttt gtttttctat 1861 aaagatgatg cttttgacga gatggaagaa aaatatgatt atcatgaaga taataaaaaa 1921 tagacgacgc atttatgccg agaaaattta ttgatgttga gaagaaccct taactaaact 1981 tgcagacgaa tgtcggcata gcgtgagcta ttaagccgac cattcgacaa gttttgggat 2041 tgttaagggt tccgaggctc aacgtcaata aagcaattgg aataaatagt atctaaagta 2101 acccgtattt aagattacat tgtacatcct tcgaaaccat agtagctgcg attccagcta 2161 ggtttccttt tatcccaatt ttagctaatt tttttgctac gccctttaag tttttggctt 2221 taacatcttc aaaaactgct gtgattatgt ttccagttaa aagttctcca tatgagttta 2281 aaacttcaga atagaaacag tcaccgctat ttttgtagtt cccaccaact gctctaggtg 2341 atattgaact agttttcttt ttattctcta tgtcgttttt tagtttttgg aatccttcag 2401 gaacatatcc atatcgagat ttggcatttt ctagattaac atctttagct gttccgtctt 2461 tatctaaaat aataattttg ccatatatgt attttagttc tttttcaatt tctttttcgt 2521 ttaaagtttc aacgttttta tctgcaatgt tatttttgtt ttgggcttga gcttctttga 2581 aattaaaatc caagaccatt gaaagtatgg ttaaaatact taaagatact actaaaatct 2641 ttcttagtga tatactgttt tgaattgcat tcattgtaaa tgcccccttg ttttgttatt 2701 taaatgaatt caatataata ttaacatata aaaacaaagg agtttaatat gaataagttt 2761 ttttactttt tgattatttt attatctgta tttttaattt ttaattttgt taattcgatt 2821 ttatttgata atccttttga ctttttagaa agttttattt attcattggt tttcacatta 2881 atttatttag gtttagaggg tcataaaaag aagaaggaat aggttgtttt ttgaaacgag 2941 tgtgaacgag tttcttcttg tcttgatact atatagaaat aactcgattt tatatatata 3001 gctgtaactg ttgatattac agtgtttaaa cgtgtttttg tgcgtgaaag gaaaatttga 3061 caataaaaaa ccccagttat attattaagg tgtcgaatct taaataatac tgggggtctt 3121 tttat //