| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102826
Identifier: 222102826
GI number: 222102826
Start: 498464
End: 499396
Strand: Reverse
Name: 222102826
Synonym: Avi_7551
Alternate gene names: NA
Gene position: 499396-498464 (Counterclockwise)
Preceding gene: 222102827
Following gene: 222102825
Centisome position: 79.05
GC content: 55.84
Gene sequence:
>933_bases ATGGGTGACGGCCGCTTTGACCCAACTGACTGGGATAGCTTCACAACCAGGACTACGGCAGGCAAAACGCGGGACGCGGT GTTTTCCAGTCGCAGCCTCCATGACAGCCTTAACCCTGCCAAGGCAAAGGGGCTTATGCGGGAATCGCGCGATGGCACAG TTAACCCGTCGTCCAACCCGATCATCATTGGGCTGGATGTGACTGGCTCCATGGGGACGATTCCGGACTATATGGTTCGC GATGGGCTTCCCGCGTTTTTTACCAGCATCTATGAGCGCAAGCCTGTATCCGATCCGCACGTCATGTTCATGGGAATTGG GGACGTGGTATGTGATCGCGCTCCGCTACAGGTTTCGCAATTTGAAGCGGATATTCGCATTGCCGAACAGCTGAAGGATC TCTTTCTGGAAGGCGGCGGCGGTGGTAACTCCAGCGAGTCTTATACTCTGCCGTGGTATTTCGCCGCCATGCACACATCA ACTGATGCGTTTGAAAAGCGCGGGAAAAAGGGGTTTCTTTTCACTGTTGGCGATGAAGAAGTCCCTCCTCTGTTGAAGGC TGAGGAAATCGAACGCGTGATGGGCGTTCGCCCCCAAATGGATTACACTGCCGAACAGCTTCTGGACCTTGTGAGCCGTC GGTATCATGTGTTCCACGTCGTGGTTGAGCAGGGCTCTCACTTCCAGAGCTATCCCGACCGCGTCCGCAACAGTTGGCAG TCCGTGCTGGGCCAGCATGTCCTCATGCTTTCCGACTATACGAAGCTCGCGGAAGTCGTTGTTTCCACGATCCAGATCGT CGAAGGCGAGCATGCGGCAGATGTGGCTTCGAGTTGGAGCGGCGATACAGCTTTGGTCGTCCAGAAGGCGACGAAAGGTC TTTCGCCTGCGACCAAAAGCGGAGGCCTGCGTTGGTTCGGCGGTAAGAAATGA
Upstream 100 bases:
>100_bases TACAGAGCTTGGATCAAGGCTCTTGAAGACAGCTTCGGTGCTCGTCGCTTCACCGAACTGTCCGTTAACGCAAGCGATGT TTATGGAAAGGATGCCCACA
Downstream 100 bases:
>100_bases GCACCGCTTATGCAGTTCTCGGCGCTGGTTGGGGCGATGAGGGCAAGGGCTTGATGACTGATGCCCTGGCCAGCGCTGGA AGCGTTGTCGTGCGGGCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MGDGRFDPTDWDSFTTRTTAGKTRDAVFSSRSLHDSLNPAKAKGLMRESRDGTVNPSSNPIIIGLDVTGSMGTIPDYMVR DGLPAFFTSIYERKPVSDPHVMFMGIGDVVCDRAPLQVSQFEADIRIAEQLKDLFLEGGGGGNSSESYTLPWYFAAMHTS TDAFEKRGKKGFLFTVGDEEVPPLLKAEEIERVMGVRPQMDYTAEQLLDLVSRRYHVFHVVVEQGSHFQSYPDRVRNSWQ SVLGQHVLMLSDYTKLAEVVVSTIQIVEGEHAADVASSWSGDTALVVQKATKGLSPATKSGGLRWFGGKK
Sequences:
>Translated_310_residues MGDGRFDPTDWDSFTTRTTAGKTRDAVFSSRSLHDSLNPAKAKGLMRESRDGTVNPSSNPIIIGLDVTGSMGTIPDYMVR DGLPAFFTSIYERKPVSDPHVMFMGIGDVVCDRAPLQVSQFEADIRIAEQLKDLFLEGGGGGNSSESYTLPWYFAAMHTS TDAFEKRGKKGFLFTVGDEEVPPLLKAEEIERVMGVRPQMDYTAEQLLDLVSRRYHVFHVVVEQGSHFQSYPDRVRNSWQ SVLGQHVLMLSDYTKLAEVVVSTIQIVEGEHAADVASSWSGDTALVVQKATKGLSPATKSGGLRWFGGKK >Mature_309_residues GDGRFDPTDWDSFTTRTTAGKTRDAVFSSRSLHDSLNPAKAKGLMRESRDGTVNPSSNPIIIGLDVTGSMGTIPDYMVRD GLPAFFTSIYERKPVSDPHVMFMGIGDVVCDRAPLQVSQFEADIRIAEQLKDLFLEGGGGGNSSESYTLPWYFAAMHTST DAFEKRGKKGFLFTVGDEEVPPLLKAEEIERVMGVRPQMDYTAEQLLDLVSRRYHVFHVVVEQGSHFQSYPDRVRNSWQS VLGQHVLMLSDYTKLAEVVVSTIQIVEGEHAADVASSWSGDTALVVQKATKGLSPATKSGGLRWFGGKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34147; Mature: 34016
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDGRFDPTDWDSFTTRTTAGKTRDAVFSSRSLHDSLNPAKAKGLMRESRDGTVNPSSNP CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC IIIGLDVTGSMGTIPDYMVRDGLPAFFTSIYERKPVSDPHVMFMGIGDVVCDRAPLQVSQ EEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHH FEADIRIAEQLKDLFLEGGGGGNSSESYTLPWYFAAMHTSTDAFEKRGKKGFLFTVGDEE HHHHHHHHHHHHHHHEECCCCCCCCCCEECCEEEEEHHCCHHHHHHCCCCCEEEEECCCC VPPLLKAEEIERVMGVRPQMDYTAEQLLDLVSRRYHVFHVVVEQGSHFQSYPDRVRNSWQ CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHH SVLGQHVLMLSDYTKLAEVVVSTIQIVEGEHAADVASSWSGDTALVVQKATKGLSPATKS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEHHHCCCCCCCCC GGLRWFGGKK CCEEECCCCC >Mature Secondary Structure GDGRFDPTDWDSFTTRTTAGKTRDAVFSSRSLHDSLNPAKAKGLMRESRDGTVNPSSNP CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC IIIGLDVTGSMGTIPDYMVRDGLPAFFTSIYERKPVSDPHVMFMGIGDVVCDRAPLQVSQ EEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHH FEADIRIAEQLKDLFLEGGGGGNSSESYTLPWYFAAMHTSTDAFEKRGKKGFLFTVGDEE HHHHHHHHHHHHHHHEECCCCCCCCCCEECCEEEEEHHCCHHHHHHCCCCCEEEEECCCC VPPLLKAEEIERVMGVRPQMDYTAEQLLDLVSRRYHVFHVVVEQGSHFQSYPDRVRNSWQ CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHH SVLGQHVLMLSDYTKLAEVVVSTIQIVEGEHAADVASSWSGDTALVVQKATKGLSPATKS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEHHHCCCCCCCCC GGLRWFGGKK CCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA