LOCUS NC_011878 6054 bp DNA circular BCT 31-MAR-2010 DEFINITION Buchnera aphidicola (Cinara cedri) plasmid pLeu-BCc, complete sequence. ACCESSION NC_011878 VERSION NC_011878.1 GI:219882535 DBLINK Project:33585 KEYWORDS . SOURCE Buchnera aphidicola (Cinara cedri) ORGANISM Buchnera aphidicola (Cinara cedri) Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera. REFERENCE 1 (bases 1 to 6054) AUTHORS Perez-Brocal,V., Gil,R., Ramos,S., Lamelas,A., Postigo,M., Michelena,J.M., Silva,F.J., Moya,A. and Latorre,A. TITLE A small microbial genome: the end of a long symbiotic relationship? JOURNAL Science 314 (5797), 312-313 (2006) PUBMED 17038625 REFERENCE 2 (bases 1 to 6054) AUTHORS Gil,R., Sabater-Munoz,B., Perez-Brocal,V., Silva,F.J. and Latorre,A. TITLE Plasmids in the aphid endosymbiont Buchnera aphidicola with the smallest genomes. A puzzling evolutionary story JOURNAL Gene 370, 17-25 (2006) PUBMED 16413149 REFERENCE 3 (bases 1 to 6054) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-JAN-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 6054) AUTHORS Gil-Garcia,R., Perez-Brocal,V., Ramos,S. and Latorre,A. TITLE Direct Submission JOURNAL Submitted (14-OCT-2003) Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de Valencia, Poligono La Coma, s/n, Paterna, Valencia 46980, Spain COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY438025. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6054 /organism="Buchnera aphidicola (Cinara cedri)" /mol_type="genomic DNA" /strain="BCce" /host="Cinara cedri" /db_xref="taxon:261318" /plasmid="pLeu-BCc" gene 1..1551 /gene="leuA" /locus_tag="pLeuBCc_001" /db_xref="GeneID:7279652" CDS 1..1551 /gene="leuA" /locus_tag="pLeuBCc_001" /note="LeuA; catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="YP_002477700.1" /db_xref="GI:219882536" /db_xref="GeneID:7279652" /translation="MNEKIIIFDTTLRDGEQALLTSLTSNEKIQIALALERLGVDVIE VGFPVSSPGDFKSVQMLSKIIKNSKICSLARCLPNDITIAADAMQFSKNFRIHLFLGT SDLHVSSKLKKNFNEIIEMAVASVKQAKKFTNDIEFSCEDAGRTTLQNLYCIIEAVIK AGATTVNIPDTVGYTTPTQFKKIITMLFNHVKNIHQAIISVHCHNDLGMAVANSISAV EAGVRQIEGTMNGLGERAGNAALEEVIMTLNVHKNSLKVSTDINIKEIHRTSKIVSQF CNTPIPLNKAIIGKNVFSHSSGIHQDGVLKNRKNYEIIDPNSIGFTDYCSLNLTSRSG RAAVKHHMKKMGYENSDYNLNELYIDFLKLADKKGRIFDYDLEALAFFKKQQNTEEYY KLEYFDVQSKLSGLSTAYIVLICGSQTNIQKATTYNGPVDAIYQALNKATLYSIVLKK FHLEANGEGKDALGKVNIIVQYKLRNFHGVGLATDIIEASAQAMVNVLNYIWKSQQVN KELERLQK" gene 1600..2445 /gene="repA1" /locus_tag="pLeuBCc_002" /db_xref="GeneID:7279648" CDS 1600..2445 /gene="repA1" /locus_tag="pLeuBCc_002" /note="RepA1" /codon_start=1 /transl_table=11 /product="replication-associated protein" /protein_id="YP_002477701.1" /db_xref="GI:219882537" /db_xref="GeneID:7279648" /translation="MFKRKKYVDNPYPKFVQPKNHKKRPAFIRYAMRCAAQTDVARNE LYYTNPLKNPITGCVLHRKRRLNEHRARALRAVVQAMLYYFNIASMLVMASVEKLSDV CGLSTYSSAGNKSITRASRLITQFMEPMGLISCEKIWDKILGMYIPKIIYLKPLFFML FDISKIRLKRVRIKQLEWINSQLKKKGEYPITLLEIEKQAKEKHIHSALLFRKSKYII KKQKNKAKKFLELDEKYAKSYILNNLVKKYSTKELCKLGLTKLKRKVNCEYFRLKKLA QLPVV" rep_origin 2446..2772 gene 2773..3876 /gene="leuB" /locus_tag="pLeuBCc_003" /db_xref="GeneID:7279649" CDS 2773..3876 /gene="leuB" /locus_tag="pLeuBCc_003" /note="LeuB" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="YP_002477702.1" /db_xref="GI:219882538" /db_xref="GeneID:7279649" /translation="MKKKKEYRIAVLPGDGIGPEVMQEAYKILNVINKKFDFNIYTNE YDIGGIAIDKYGAPLPKKTLNGCIESHAILFGSIGGKEWTHLPADEQPERGGLLPLRK FFNLFVNLRPIKLHFSLKKLSPLKKEIIQDGFDILCVRELIGGIYFGLPKGKNTFDKK NISAFDTEIYSTKEIEKIADIAFQLSLKRKKKVFSIDKANVLESSMLWREVVIQVSKR YPNVELIHLYIDNAAMQLIKNPNQFDVILCSNLFGDILSDECAALTGSLGMLPSASLN ESFFGLFEPAGGSAPDLKGKNIANPIAQILSLALLFKYSLQLEKISHLIELSVLKTLE KGYRTLDISNGKKYITTDQMGNYIAKTLSELIN" gene 3876..5267 /gene="leuC" /locus_tag="pLeuBCc_004" /db_xref="GeneID:7279650" CDS 3876..5267 /gene="leuC" /locus_tag="pLeuBCc_004" /note="LeuC" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase large subunit" /protein_id="YP_002477703.1" /db_xref="GI:219882539" /db_xref="GeneID:7279650" /translation="MKTTLYQKIFDSHLIYEDKNTTPIIYIDLHLIHEVTSPQAFDGL RLKKRLVRNPLKTFATMDHNVSTISRKISDSKKMAKIQMRTLIKNCKDFNIPLYDLKN INQGIVHVIGPEQGMTLPGMTVVCGDSHTSTHGAFGALAFGIGTSEVEHVFATQTILQ NRMKNMRISIYGNIKKNIFSKDIILNIINKIGTSGGTGYVVEFSGSVIKKMSMESRMT ICNMAIEMGAKSGIIEPDAITYNYLKNKNFVPKNRSWKEYIRKWNNLKSGPKSFFEQD FSINISHISPQITWGTNPSQVIPINGKIPILKDIQDVNVREDTERSLEYMGLKPGTSL LNIPVDKVFIGSCTNSRIEDLRVVASVVQNKKISDNIEALIVPGSGLVKKQAEKEGLD KIFKNAGFQWRHAGCSMCLGMNEDQLKPYERCASTSNRNFEGRQGPKGRTHLMSPWLA AQTALYGKFVHIA" gene 5318..5923 /gene="leuD" /locus_tag="pLeuBCc_005" /db_xref="GeneID:7279651" CDS 5318..5923 /gene="leuD" /locus_tag="pLeuBCc_005" /note="LeuD" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase small subunit" /protein_id="YP_002477704.1" /db_xref="GI:219882540" /db_xref="GeneID:7279651" /translation="MKNFIQHIGVLVPLDISNIDTDIIIPKQFLQKITRTGFGKHLFF NWRFKDSEGKIKNDKFILNHDNYRKASILLTRENFGCGSSREHAVWALMDYGFKVIIA QSFSDIFVNNCLNNRLLLISLSKKHIEKLFFITQHKKRKICLIDLLKEKIIVDKYNIS FKIDFIQKQSIMYGFDNIDYTLKHKKKIDLYEKKKNKYVFF" ORIGIN 1 atgaacgaaa aaataattat ttttgacact actttacgcg atggcgaaca ggcgttgcta 61 actagtttaa cgtctaatga aaaaattcag atagctttag ctttagaacg tttgggagta 121 gatgtaattg aggtgggttt tcctgtttcc tctccgggag attttaaatc ggtacaaatg 181 ctttctaaaa ttataaaaaa cagtaagatt tgtagtttag ctcgctgttt accaaacgat 241 ataactattg cagcggatgc tatgcaattt tcaaaaaatt ttagaattca tttattttta 301 ggcacttctg atttgcatgt atcttctaaa ttaaaaaaaa attttaatga aataattgag 361 atggcagttg cttcagtcaa acaagcaaaa aaatttacga atgatattga attttcgtgc 421 gaagatgctg gtcgaactac attacaaaac ttatattgta ttattgaagc tgtaattaaa 481 gcgggtgcaa ctactgttaa tattccagat actgtaggat atactactcc aacccaattc 541 aaaaaaataa ttactatgtt atttaatcac gtaaaaaata tacatcaagc aattatttct 601 gtacattgtc ataatgattt aggaatggct gtagcgaact ctattagtgc tgttgaggct 661 ggagtgagac aaattgaagg aactatgaat ggtttgggag aacgtgctgg aaatgctgct 721 ttagaagaag ttattatgac attaaatgtc cataaaaatt ctttaaaagt ctctactgat 781 attaatataa aagagattca cagaaccagt aagatcgtta gtcaattttg caatacaccg 841 attcctttaa ataaagccat tataggaaaa aatgtgtttt ctcattcctc tggtattcat 901 caagacggtg tattaaaaaa tagaaaaaac tatgaaatta ttgatccaaa ttctatcgga 961 tttactgatt attgttcttt gaacttgact tctcgctccg ggcgagcagc agtcaagcat 1021 catatgaaaa aaatgggata cgaaaatagc gattataatt taaacgaatt gtacatagat 1081 tttttaaaat tagccgataa aaaaggtcga atttttgatt atgatttaga agctttagca 1141 ttttttaaaa aacaacaaaa tacagaagaa tattataaat tggaatattt tgatgttcaa 1201 tcaaaattat caggattgtc tactgcatat attgttttaa tatgtggttc tcaaactaac 1261 attcaaaaag ctaccaccta taatggtcca gtggatgcaa tatatcaagc tttaaataaa 1321 gcaactctat attcaatagt tttaaaaaaa tttcatttgg aagcaaatgg agagggaaaa 1381 gatgctttgg gaaaagtaaa tattattgtt caatacaaat tacggaattt tcatggagtt 1441 ggtttagcta ctgatattat tgaagcatca gctcaagcta tggtaaatgt acttaattat 1501 atttggaaat ctcaacaggt taataaggaa ctggaaagat tgcagaaata aaaaaataat 1561 tgtgttcttt ttttttaaaa atattatttg gagacaattg tgtttaaaag aaaaaaatat 1621 gttgacaatc cttatcctaa atttgttcaa cctaaaaatc ataaaaaacg tccagctttt 1681 attcgatacg caatgcgatg tgctgctcaa actgatgtag ctagaaacga attgtattat 1741 actaatccat taaaaaatcc tataacagga tgtgttttgc atagaaaaag acgtttaaat 1801 gaacatagag cacgagcatt aagagctgtg gtgcaagcga tgctatatta ttttaatata 1861 gcatctatgt tagttatggc atctgttgaa aaattgtctg atgtatgtgg attatctact 1921 tattctagcg cagggaataa atctattaca cgcgcttctc gtcttattac tcaatttatg 1981 gaacctatgg gtcttataag ttgtgaaaaa atttgggaca aaattttagg aatgtatatt 2041 cctaaaatta tttatttgaa acctttgttt tttatgcttt ttgatatttc taaaataaga 2101 ctcaaacgtg ttcgaataaa gcaattagaa tggatcaatt cgcaattaaa gaaaaaaggg 2161 gaatatccga taacattatt agaaattgaa aaacaggcta aagaaaaaca catccattcc 2221 gctttattat ttagaaagtc taaatatatc attaaaaaac aaaaaaacaa agcaaaaaaa 2281 tttttggaat tagacgaaaa atatgcaaaa tcgtatatat taaataattt ggtgaaaaaa 2341 tattcgacca aagaattatg caaacttgga ttgactaaat tgaaaagaaa ggtaaattgc 2401 gaatatttta gattaaaaaa attagcacaa cttccagttg tgtgataatt tttttttgaa 2461 attttttttt tttttttttg gattattatg cgtttaatta cgtagggggt atttttttta 2521 aaaattttat tttacgaatc tattattttt tttcacttgc atctaatgtt tttttttatt 2581 tttttttttt tttttgagta ttctttttta aaaaaaacat tagatgcaag tgaaaaaaaa 2641 taatagatgc ttcttaaaga gatacatgca aaataacttt taaaaaaaaa aaaaaaaaaa 2701 ataaagatat atactataat atatagtata ttaatacagt aaaacagatc aataaaaata 2761 ggcgaaacag aaatgaagaa aaaaaaagag tatagaattg cggttcttcc tggagatgga 2821 attggtccag aagttatgca agaagcgtat aaaatattaa atgttattaa taaaaaattt 2881 gattttaata tttatacaaa cgaatacgat attggcggta tagccattga taaatatggt 2941 gcgccgttac caaaaaaaac attaaatgga tgtatagaat ctcatgctat tttatttgga 3001 tctattggag gaaaagaatg gacgcattta ccagcagacg aacaacccga aagaggcgga 3061 ttgttaccat taagaaaatt ttttaattta tttgttaatc ttagacctat aaaattgcat 3121 ttttctttaa aaaaattgtc tcctttaaaa aaagaaatta tacaagatgg atttgatatt 3181 ttatgtgttc gtgaattaat tggtggaata tattttggtt taccaaaagg aaaaaataca 3241 tttgataaaa aaaatatttc tgcttttgat accgaaattt attcgaccaa agaaattgaa 3301 aaaattgcag atattgcatt ccagttgtct ttaaaaagaa aaaaaaaagt tttttctatt 3361 gataaagcaa atgttttaga aagttcgatg ttatggagag aagttgtgat ccaagtttca 3421 aaaagatatc caaatgttga actaattcat ttgtatattg ataacgcagc tatgcaactt 3481 attaaaaatc caaatcaatt cgatgttatt ttgtgttcca atttgtttgg tgatattttg 3541 tctgatgaat gtgccgcttt aacaggatct ttaggtatgt tgccttcggc tagtttaaat 3601 gaaagttttt tcggattatt tgaacctgca ggtggttctg caccagattt gaaaggaaaa 3661 aatatagcga atcctattgc tcaaattctt tcattagcat tattatttaa atattcttta 3721 caattagaaa aaatatcaca cttaatagaa ttatcagttt taaaaacgtt agaaaaagga 3781 tatcgtacat tagatatttc taatggtaaa aaatatatca caactgatca aatgggcaat 3841 tacattgcaa aaactttatc tgagttaata aactaatgaa aactacttta tatcaaaaaa 3901 tatttgattc acatttaata tatgaagata aaaataccac accaattatt tatattgatt 3961 tacatttaat tcacgaagtc acatctccac aagcattcga tggattacga ttaaaaaaaa 4021 ggttagttcg taatccttta aaaacttttg ctaccatgga tcacaatgtt tcaacaattt 4081 ctagaaaaat tagtgattct aaaaaaatgg caaaaattca aatgcgaaca ttaataaaaa 4141 attgtaaaga tttcaatatt cctctttatg atttaaaaaa tattaatcaa ggaattgtac 4201 atgttatagg tccagaacag ggtatgactt taccaggtat gaccgttgtt tgtggtgact 4261 ctcacacttc tacacatgga gcttttggtg ctttagcatt tggtataggt acttctgagg 4321 tagaacatgt ttttgctaca caaaccatac tacagaatcg tatgaaaaat atgagaatat 4381 ctatttatgg aaatataaaa aaaaatattt tttctaaaga tattatttta aatattatca 4441 ataaaattgg tacttcaggt ggtactggtt atgtcgtaga attttctggc tcagtaataa 4501 aaaaaatgag tatggaaagt cgtatgacca tatgcaatat ggctattgaa atgggagcaa 4561 aatcaggaat tattgaaccc gatgcaataa cttataatta tttaaaaaat aaaaattttg 4621 ttccaaaaaa tcgttcttgg aaagaatata ttcgaaaatg gaataattta aagtctggac 4681 caaaatcttt ttttgagcaa gacttttcta ttaatattag tcatatttct ccacaaatta 4741 cctggggaac taatccttct caagtaattc caattaatgg aaaaatacca atattaaaag 4801 atatacaaga tgttaatgta agagaggata ccgaacgatc tttagaatac atgggtttaa 4861 aacctggtac aagtttgtta aatataccag ttgataaagt ttttataggt tcttgtacta 4921 attcaagaat tgaagattta agagttgtag cgtctgttgt acaaaacaag aaaatttctg 4981 ataatattga agcattaata gttcctggat cggggttagt aaaaaaacaa gctgaaaaag 5041 aaggtctcga taaaattttt aaaaatgctg gttttcaatg gagacatgcg ggttgttcta 5101 tgtgtttagg tatgaacgaa gatcaattaa aaccatacga aagatgcgct tcgactagta 5161 atagaaattt tgaaggaaga caggggccaa aaggaagaac tcatcttatg agtccttggt 5221 tagctgctca aaccgctcta tatggaaaat ttgtgcatat tgcataacaa ttttctattt 5281 taaaaaatta tttttaaaaa gataagtcaa tataataatg aaaaatttta tacaacatat 5341 tggtgtttta gttccactag atatatcaaa tattgataca gatattatta ttccgaaaca 5401 gtttttacaa aaaatcacac gtactggttt tggtaaacat ttatttttta attggagatt 5461 taaagattct gaaggaaaaa ttaaaaatga taaatttatt ttgaatcatg ataattatcg 5521 aaaagccagt attttattaa caagagaaaa ttttggttgt ggttcttctc gagaacacgc 5581 agtttgggct ttaatggatt atggatttaa agtcattata gctcagagtt tttctgatat 5641 atttgttaat aattgtttaa ataatagatt attattaatt tctctttcta aaaaacatat 5701 tgaaaaatta ttttttataa ctcaacacaa aaaaagaaaa atttgtttaa ttgatttatt 5761 gaaagaaaaa attattgtag ataaatataa tatttctttc aaaattgatt tcattcaaaa 5821 acaatcaatt atgtatggct ttgataacat tgactataca ttaaaacata aaaaaaaaat 5881 tgatttatac gaaaaaaaga aaaataaata tgttttcttt tgatttttat tgttgaaatt 5941 gtaattcaag tctctagtat tttagagcat aaaatactag agacatttta aaaaaaatta 6001 ataaaaatat atttttttta cacaaatatt atttttacaa taggtattta aaac //