LOCUS NC_011602 6147 bp DNA circular BCT 08-MAY-2009 DEFINITION Escherichia coli O127:H6 str. E2348/69 plasmid pE2348-2, complete sequence. ACCESSION NC_011602 VERSION NC_011602.1 GI:215274578 DBLINK Project:32571 KEYWORDS . SOURCE Escherichia coli O127:H6 str. E2348/69 ORGANISM Escherichia coli O127:H6 str. E2348/69 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 6147) AUTHORS Iguchi,A., Thomson,N.R., Ogura,Y., Saunders,D., Ooka,T., Henderson,I.R., Harris,D., Asadulghani,M., Kurokawa,K., Dean,P., Kenny,B., Quail,M.A., Thurston,S., Dougan,G., Hayashi,T., Parkhill,J. and Frankel,G. TITLE The complete genome sequence and comparative genome analysis of enteropathogenic E. coli O127:H6 strain E2348/69 JOURNAL J. Bacteriol. (2008) In press PUBMED 18952797 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 6147) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-NOV-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6147) AUTHORS Thomson,N.R. TITLE Direct Submission JOURNAL Submitted (16-JUL-2008) Thomson N.R., Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FM180570. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6147 /organism="Escherichia coli O127:H6 str. E2348/69" /mol_type="genomic DNA" /strain="E2348/69" /serotype="O127:H6" /db_xref="taxon:574521" /plasmid="pE2348-2" gene 141..956 /gene="sulII" /locus_tag="E2348_P2_01" /db_xref="GeneID:7056255" CDS 141..956 /gene="sulII" /locus_tag="E2348_P2_01" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase" /protein_id="YP_002332147.1" /db_xref="GI:215274579" /db_xref="GeneID:7056255" /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR" gene 1017..1820 /gene="strA" /locus_tag="E2348_P2_02" /db_xref="GeneID:7056264" CDS 1017..1820 /gene="strA" /locus_tag="E2348_P2_02" /codon_start=1 /transl_table=11 /product="streptomycin phosphotransferase StrA" /protein_id="YP_002332148.1" /db_xref="GI:215274580" /db_xref="GeneID:7056264" /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG" gene 1820..2656 /gene="strB" /locus_tag="E2348_P2_03" /db_xref="GeneID:7056262" CDS 1820..2656 /gene="strB" /locus_tag="E2348_P2_03" /codon_start=1 /transl_table=11 /product="streptomycin phosphotransferase StrB" /protein_id="YP_002332149.1" /db_xref="GI:215274581" /db_xref="GeneID:7056262" /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT SY" gene complement(2628..3167) /locus_tag="E2348_P2_04" /db_xref="GeneID:7056263" CDS complement(2628..3167) /locus_tag="E2348_P2_04" /note="pseudogene, N-ter part of putative transposase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002332150.1" /db_xref="GI:215274582" /db_xref="GeneID:7056263" /translation="MPHVAARTASRDRDTGRYQSHRPEQTLLYQIVDEYYPAFAALMA EQGKELPGYVQREFEEFLQCGRLEHGFLRVRCESCHAEHLVAFSCKRRGFCPSCGARR MAESAALLVDEVLPEQPMRQWVLSFPFQLRFLFGVVCGKGRNPTLRLWPAIFSGEIDV FPGDRRSRLISSMTSVAPA" gene complement(3211..3600) /locus_tag="E2348_P2_05" /db_xref="GeneID:7056256" CDS complement(3211..3600) /locus_tag="E2348_P2_05" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002332151.1" /db_xref="GI:215274583" /db_xref="GeneID:7056256" /translation="MSTELNSGTVGGFGHMGPNDPYNDGHSGSGSSGGSFNGGGNGGH DNSSGSSYTASFGLITGRHPITVPGTKNINSVDLSAVINNIIHHEGARNNMYLDTANN VRVGVTGTGWQCLATAGISAEGKRTFR" gene 3770..4258 /locus_tag="E2348_P2_06" /db_xref="GeneID:7056257" CDS 3770..4258 /locus_tag="E2348_P2_06" /codon_start=1 /transl_table=11 /product="entry exclusion protein 1" /protein_id="YP_002332152.1" /db_xref="GI:215274584" /db_xref="GeneID:7056257" /translation="MFCCYNTVHTGDTVTFMAWHTVQETLKLTGKSRSQLYRDMAKGL VSYRTGKNDRREFETSELIRAYGELRTSETPKRHKEGHSKSVVSQAENAQLDVIQQKL DALQQTVTLMLEDKMAREAENRLRNEEREQLQAEISRLADALAQEKKRGFWSRLFRSG SE" gene complement(4317..4592) /locus_tag="E2348_P2_07" /db_xref="GeneID:7056258" CDS complement(4317..4592) /locus_tag="E2348_P2_07" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002332153.1" /db_xref="GI:215274585" /db_xref="GeneID:7056258" /translation="MYITPFLNVLTAGFPAAPATLHGHAINCVPVHRFRMGRTPETGL TPAEWCEFPRYALVRILMHAVKTEPARFWRVFGWFVACFTGFPSETP" gene complement(4950..5099) /locus_tag="E2348_P2_08" /db_xref="GeneID:7056259" CDS complement(4950..5099) /locus_tag="E2348_P2_08" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002332154.1" /db_xref="GI:215274586" /db_xref="GeneID:7056259" /translation="MPSEYDEQLDSTDTQLPGEYDLFDLMAQVTEENLHAPVDFGSPV GREAL" gene 5224..5628 /locus_tag="E2348_P2_09" /db_xref="GeneID:7056260" CDS 5224..5628 /locus_tag="E2348_P2_09" /codon_start=1 /transl_table=11 /product="probable plasmid replication initiation protein" /protein_id="YP_002332155.1" /db_xref="GI:215274587" /db_xref="GeneID:7056260" /translation="MLHVAGEKRQHRRVSRICDTGDIPLPRSLTRYARSFGCGERYRL TDGDGNFLEDTRKTLSKEEIRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRR FPLVAPSCALLFLPFGLPVSFRCYGRGFSFHA" gene 5849..5950 /locus_tag="E2348_P2_mR_1" /db_xref="GeneID:7056261" misc_RNA 5849..5950 /locus_tag="E2348_P2_mR_1" /product="antisense RNA, antisense repressor of the replication of plasmid" /note="idenitfied in Rfam screening as RNAI" /db_xref="GeneID:7056261" ORIGIN 1 gatatattta tttccaaaat gctacagata catcatcatg aaacggatca ccgcaaacag 61 gttactcgcc tggggattcc ctttcgaccc gagcatccgt atgagactca tgctcgatta 121 ttattattat agaagccccc atgaataaat cgctcatcat tttcggcatc gtcaacataa 181 cctcggacag tttctccgat ggaggccggt atctggcgcc agacgcagcc attgcgcagg 241 cgcgtaagct gatggccgag ggggcagatg tgatcgacct cggtccggca tccagcaatc 301 ccgacgccgc gcctgtttcg tccgacacag aaatcgcgcg tatcgcgccg gtgctggacg 361 cgctcaaggc agatggcatt cccgtctcgc tcgacagtta tcaacccgcg acgcaagcct 421 atgccttgtc gcgtggtgtg gcctatctca atgatattcg cggttttcca gacgctgcgt 481 tctatccgca attggcgaaa tcatctgcca aactcgtcgt tatgcattcg gtgcaagacg 541 ggcaggcaga tcggcgcgag gcacccgctg gcgacatcat ggatcacatt gcggcgttct 601 ttgacgcgcg catcgcggcg ctgacgggtg ccggtatcaa acgcaaccgc cttgtccttg 661 atcccggcat ggggtttttt ctgggggctg ctcccgaaac ctcgctctcg gtgctggcgc 721 ggttcgatga attgcggctg cgcttcgatt tgccggtgct tctgtctgtt tcgcgcaaat 781 cctttctgcg cgcgctcaca ggccgtggtc cgggggatgt cggggccgcg acactcgctg 841 cagagcttgc cgccgccgca ggtggagctg acttcatccg cacacacgag ccgcgcccct 901 tgcgcgacgg gctggcggta ttggcggcgc tgaaagaaac cgcaagaatt cgttaactgc 961 acattcggga tatttctcta tattcgcgct tcatcagaaa actgaaggaa cctccattga 1021 atcgaactaa tatttttttt ggtgaatcgc attctgactg gttgcctgtc agaggcggag 1081 aatctggtga ttttgttttt cgacgtggtg acgggcatgc cttcgcgaaa atcgcacctg 1141 cttcccgccg cggtgagctc gctggagagc gtgaccgcct catttggctc aaaggtcgag 1201 gtgtggcttg ccccgaggtc atcaactggc aggaggaaca ggagggtgca tgcttggtga 1261 taacggcaat tccgggagta ccggcggctg atctgtctgg agcggatttg ctcaaagcgt 1321 ggccgtcaat ggggcagcaa cttggcgctg ttcacagcct atcggttgat caatgtccgt 1381 ttgagcgcag gctgtcgcga atgttcggac gcgccgttga tgtggtgtcc cgcaatgccg 1441 tcaatcccga cttcttaccg gacgaggaca agagtacgcc gcagctcgat cttttggctc 1501 gtgtcgaacg agagctaccg gtgcggctcg accaagagcg caccgatatg gttgtttgcc 1561 atggtgatcc ctgcatgccg aacttcatgg tggaccctaa aactcttcaa tgcacgggtc 1621 tgatcgacct tgggcggctc ggaacagcag atcgctatgc cgatttggca ctcatgattg 1681 ctaacgccga agagaactgg gcagcgccag atgaagcaga gcgcgccttc gctgtcctat 1741 tcaatgtatt ggggatcgaa gcccccgacc gcgaacgcct tgccttctat ctgcgattgg 1801 accctctgac ttggggttga tgttcatgcc gcctgttttt cctgctcatt ggcacgtttc 1861 gcaacctgtt ctcattgcgg acaccttttc cagcctcgtt tggaaagttt cattgccaga 1921 cgggactcct gcaatcgtca agggattgaa acctatagaa gacattgctg atgaactgcg 1981 cggggccgac tatctggtat ggcgcaatgg gaggggagca gtccggttgc tcggtcgtga 2041 gaacaatctg atgttgctcg aatatgccgg ggagcgaatg ctctctcaca tcgttgccga 2101 gcacggcgac taccaggcga ccgaaattgc agcggaacta atggcgaagc tgtatgccgc 2161 atctgaggaa cccctgcctt ctgcccttct cccgatccgg gatcgctttg cagctttgtt 2221 tcagcgggcg cgcgatgatc aaaacgcagg ttgtcaaact gactacgtcc acgcggcgat 2281 tatagccgat caaatgatga gcaatgcctc ggaactgcgt gggctacatg gcgatctgca 2341 tcatgaaaac atcatgttct ccagtcgcgg ctggctggtg atagatcccg tcggtctggt 2401 cggtgaagtg ggctttggcg ccgccaatat gttctacgat ccggctgaca gagacgacct 2461 ttgtctcgat cctagacgca ttgcacagat ggcggacgca ttctctcgtg cgctggacgt 2521 cgatccgcgt cgcctgctcg accaggcgta cgcttatggg tgcctttccg cagcttggaa 2581 cgcggatgga gaagaggagc aacgcgatct agctatcgcg gccgcgatca agcaggtgcg 2641 acagacgtca tactagatat caagcgactt ctcctatccc ctgggaacac atcaatctca 2701 ccggagaata tcgctggcca aagccttagc gtaggattcc gccccttccc gcaaacgacc 2761 ccaaacagga aacgcagctg aaacgggaag ctcaacaccc actgacgcat gggttgttca 2821 ggcagtactt catcaaccag caaggcggca ctttcggcca tccgccgcgc cccacagctc 2881 gggcagaaac cgcgacgctt acagctgaaa gcgaccaggt gctcggcgtg gcaagactcg 2941 cagcgaaccc gtagaaagcc atgctccagc cgcccgcatt ggagaaattc ttcaaattcc 3001 cgttgcacat agcccggcaa ttcctttccc tgctctgcca taagcgcagc gaatgccggg 3061 taatactcgt caacgatctg atagagaagg gtttgctcgg gtcggtggct ctggtaacga 3121 ccagtatccc gatcccggct ggccgtcctg gccgccacat gaggcatgtt ccgcgtcctt 3181 gcaatactgt gtttacatac agtctatcgc ttagcggaaa gttcttttac cctcagccga 3241 aatgcctgcc gttgctagac attgccagcc agtgcccgtc actcccactc ttacattgtt 3301 cgcagtatct aggtacatgt tattgcgtgc accttcatga tgtataatgt tattaatgac 3361 agcagaaaga tcgacagaat taatattctt cgtacctggg acagttatcg ggtgtcggcc 3421 agtgatgaga ccaaaggatg cagtataaga tgaaccacta ctattatcat ggccaccatt 3481 accaccaccg ttaaaactac ctcccgaact tccagagccg ctatgaccat cattgtaggg 3541 gtcatttggt cccatgtgac caaaaccacc gacagtaccg ctatttaact ctgtactcat 3601 aaaattatcc tctttgactt ttaaaaacag caaaaactgt atttataaca atgtgtttat 3661 atacagtatt cgaaatacta cgcccgtcaa aaccacaccg tcaacaggtt ttttgtgtat 3721 ttttcacgcc tcacgggcag cctcagacct tttgtgttaa aacagtaata tgttctgctg 3781 ttacaatacg gtacacacag gagacactgt cacttttatg gcatggcaca cagttcaaga 3841 gacactgaaa ttaacaggaa agtcgcgctc gcaattatat cgtgacatgg ctaaaggcct 3901 tgtcagctat cgcacaggaa aaaatgatcg ccgggagttc gagaccagtg aactgattcg 3961 ggcctatggc gagctgcgca cttctgagac accaaaaagg cacaaggagg gacactccaa 4021 atctgtcgtt agccaggcgg aaaatgctca gctagacgtc attcagcaga aactggacgc 4081 tctgcagcag actgttaccc taatgcttga agacaagatg gcgcgggaag cagaaaaccg 4141 cctgcgaaat gaggagaggg aacaactaca ggccgaaatt agccgtctgg ctgacgcgct 4201 ggcacaggaa aaaaagcggg gattctggtc gcggctgttt cgctccggtt cagagtaaca 4261 gtgcaggtga ctctgattta ccataacatc tgttatcagc accgcctgag aggccctcag 4321 ggcgtttctg acgggaaacc ggtaaaacag gcaacaaacc acccgaaaac ccgccagaaa 4381 cgcgcaggct ctgtttttac ggcatgcatg agtatgcgca caagtgcata gcgcggaaat 4441 tcacaccatt cagccggggt aagtcctgtt tccggcgttc ttcccatccg aaaacggtga 4501 acggggacgc aatttattgc gtggccgtga agcgttgccg gcgcagccgg aaaacccgct 4561 gtcagcacgt tcaggaaggg ggtgatgtac aaatggcaca gaggatgaaa gtgacgtatg 4621 agctgaagga gcgatgtaat tctgtagtca ggaagaataa cccgttcatg caggcatgaa 4681 cgatacagtg aggaacgctt tttttgtcac gatctcccct taacctgcgt aaatcacccg 4741 ccatggttga ttatttttca acctcaaaat ggtcatacac ctaacgcagc cgcgattttc 4801 atcgcaactg catgaattaa aagaaaaaaa aggaatattt cgttttcacg agtaataccc 4861 gggtattaaa aatccactgt aattacatga aaataaagaa ataaaaggta ataccggagt 4921 attaccacgt acgcgggcaa gcgaaaaagc tataacgctt cccggccgac aggcgaccca 4981 aaatccacag gggcatgcag gttctcttca gtaacctgcg ccattaaatc aaaaaggtca 5041 tattcgccgg gaagctgcgt atcagtcgaa tccagttgtt catcatattc agatggcatg 5101 gggtgatatc cagtagctga gaggttgtta gcgggtttcg gggcgcagcc ctgaaccagt 5161 catgtagcgc tagcggagtg tatactggct tactatgttg ccacgattgc gaaaatcagt 5221 gaagtgcttc atgtggcagg agaaaaaagg cagcaccggc gcgtcagcag aatatgcgat 5281 acaggagata ttccgcttcc tcgctcactg actcgctacg ctcggtcgtt cggctgcggc 5341 gagcggtacc ggcttacgga cggggacgga aatttcctgg aagataccag gaagacactt 5401 agcaaagaag agataaggcc acggcgaagc cgtttttcca taggctccgc ccccctgaca 5461 agcatcgcaa aatctgacgc tcaaatcagt ggtggcgaaa cccgacagga ctataaagat 5521 cccaggcgtt tccccctggt agctccctcg tgcgctctcc tgttcctgcc tttcggttta 5581 ccggtgtcat tccgctgtta tggccgcggt ttctcattcc acgcctgaca ctcagttccg 5641 tgaaggcagt tcgctccaag ctggactgta tgcacgaacc ccccgttcag tccgaccgct 5701 gcgccttgtc cggtaactat caacttgagt ccaacccgga aagacacgac aaaacgccac 5761 tggcagcagc cattagtaac aggagtgcac gagaagatag attaagaggt cttgaagtag 5821 aggcctgact gcggctacac tgaaagaaca gttttggtaa tggcggtctc gtgaaccctg 5881 ttaccgggtt aagcagttcc ccaactgact taaccttcga acaaaccgcc tccccaggcg 5941 gttttttcgt ttacagagca agagattacg attcattgaa aaggatctca agaagatcct 6001 ttgtagatta ctatcaatta atcttccgaa catgacacca gtcactgttg attacggtta 6061 aaccgctccg taacaggttt ccctcgtatt ggtgacttgc agcaccaaag aagcaaaaaa 6121 gataaatata tctacttatt gagagat //