LOCUS NC_011411 4082 bp DNA circular BCT 22-JUL-2009 DEFINITION Escherichia coli SE11 plasmid pSE11-6, complete sequence. ACCESSION NC_011411 VERSION NC_011411.1 GI:209916825 DBLINK Project:18057 KEYWORDS . SOURCE Escherichia coli SE11 ORGANISM Escherichia coli SE11 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 4082) AUTHORS Oshima,K., Toh,H., Ogura,Y., Sasamoto,H., Morita,H., Park,S.H., Ooka,T., Iyoda,S., Taylor,T.D., Hayashi,T., Itoh,K. and Hattori,M. TITLE Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult JOURNAL DNA Res. 15 (6), 375-386 (2008) PUBMED 18931093 REFERENCE 2 (bases 1 to 4082) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-OCT-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4082) AUTHORS Hattori,M., Oshima,K., Toh,H., Sasamoto,H. and Shiba,T. TITLE Direct Submission JOURNAL Submitted (21-OCT-2006) Contact:Masahira Hattori Graduate School of Frontier Sciences, University of Tokyo; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan URL :http://www.cb.k.u-tokyo.ac.jp/hattorilab/ COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AP009246. This work was done in collaboration with Yoshitoshi Ogura, Tadasuke Ooka, and Tetsuya Hayashi (University of Miyazaki), Sang-Hee Park and Kikuji Itoh (University of Tokyo), and Hidetoshi Morita (Azabu University). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4082 /organism="Escherichia coli SE11" /mol_type="genomic DNA" /strain="SE11" /db_xref="taxon:409438" /plasmid="pSE11-6" gene 1..702 /locus_tag="ECSE_P6-0001" /db_xref="GeneID:6998253" CDS 1..702 /locus_tag="ECSE_P6-0001" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="YP_002291084.1" /db_xref="GI:209916826" /db_xref="GeneID:6998253" /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCIGRLKSGADAESPK LQKTMTITAAEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKDDEKREEFRWIQYRA QYAKGEARAQITFSDAVMPYLTQLQGQFTRVVIKNISRLSRSYSIRIYELLQQFRSTG ERIIALDDFRSMLDIEHKYQTYKSLNQQLLRPCIDELNKKSDLAVTVETIKKGRTVVA LHFRFKEDKQIKMTI" gene complement(958..3117) /locus_tag="ECSE_P6-0002" /db_xref="GeneID:6998251" CDS complement(958..3117) /locus_tag="ECSE_P6-0002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002291085.1" /db_xref="GI:209916827" /db_xref="GeneID:6998251" /translation="MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTR KSGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPRELPQDAAR ETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTH AETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETE RGEQNRLINRLNLEIQISRTELRNSGLTEPARRVADLLNIVLPDNATSYTLRDIIEAL PKDSNAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRI PLMQWAAPEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGASGL AALRVQLLKREEELRRKEQEDTERSRAERRAEQLRKNDNAVMDSGVLSAVVTGYGEAP MPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRIFERVDLMRDRSGYICDRSEIGQHP PLQRVYSSATFEQLLTQVCQTWPQYTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVD FTQGRLLPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNS QLVISALTDKGLRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQP DHLFRSLGFNRTWDEWRREEDARTHATERRHDRGWSQ" gene 3296..3550 /locus_tag="ECSE_P6-0003" /db_xref="GeneID:6998252" CDS 3296..3550 /locus_tag="ECSE_P6-0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002291086.1" /db_xref="GI:209916828" /db_xref="GeneID:6998252" /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVIVGAALLAKVRK PEEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPGQ" ORIGIN 1 atgtcggatc taattgccta taaatccaat gcgctggttg aagccagtta taaattgacc 61 ctacaggaac agcgtttttt gttactttgc atcggtcgat tgaagtctgg ggctgatgca 121 gaatctccaa aattgcaaaa gacaatgacc attacagctg cggaatattt cgattcattc 181 cctgacatgg ggcggaaaaa tgccgaggtt cagttacagg aagcaattga tcgtttgtgg 241 gacaggtcaa tcattctcaa ggatgacgag aaacgtgagg agttccgctg gatccagtat 301 cgggcacagt acgctaaagg cgaggccaga gcacaaataa cattttctga cgcagtaatg 361 ccttatttga cacaactaca agggcaattt actagagttg taatcaagaa tatatctaga 421 ttatcaagaa gttacagtat aaggatatac gaactcctcc agcagttccg cagtactggc 481 gaacgtatta tcgctctcga tgattttcgc tcaatgcttg atatagagca taaatatcaa 541 acatataaat cacttaacca gcaattatta agaccctgca ttgacgaact gaacaaaaaa 601 agcgacctgg ctgtaacggt tgagacgatc aaaaaggggc gcacggttgt agccctgcat 661 tttcgcttca aggaagacaa acaaatcaag atgacgatct aaaatcgatt ttaaggcacc 721 taaaacgctc cctgccgcgt tttttttgtg ttagtagtgc gaaggtacta ttgaagtgaa 781 aaattgcgtc aaaagcgctc taatgcagcg aaaaaagaac ccccattttt tgggggcgga 841 aaaacaaaac tatgcttgca ttatgtgtgt gcttcttgca ttcatccctg tcgatgaaca 901 tcgaagaaca tcgacgaaca taacacgatg ttaaacaaaa caaaatattg ttcacattca 961 ctgtgaccaa ccgcgatcat gtctcctctc ggtggcgtgt gttcgtgcat cttcctcgcg 1021 ccgccattcg tcccaggtac gattaaaacc cagcgagcgg aacagatgat ccggctgttt 1081 ttctggtgtg ttgacggcag caaaaagcgg tgcctcacgg gttttcagat gaaactccat 1141 aagttccggc gcaggtgata tgtggctgtc tgcatcgtga tttacggcaa caccataccc 1201 tgcataccgt aaccccttat cggtcagtgc actgatgacc agctggctgt tatcggctga 1261 gggaacggca aacgcgggat acagcgtacc attaagccgg acaacaccgc ccagagagtc 1321 atccacgccc atgaccagca aaagctgaag ctggcgggtt tcccggtcga cagaactcat 1381 taccggcatc agcgtcggta gcagacgtcc ctgcgtaaaa tccaccttcc ttgctgccag 1441 tgatggcatg gctggctggc ggtcttctcc aagacagaaa gactccggcc atgtcttcgg 1501 ctggcggaga ttgcgggtat attgcggcca tgtctggcaa acctgcgtca gaagttgctc 1561 aaaggtcgca gaggaataaa cacgttgcag tggtggatgt tgaccgattt cgcttcggtc 1621 acagatataa ccactcctgt cacgcattaa atcaacacgc tcaaagattc tggtgcggta 1681 tttctccagc tcgttccccc agagcgtgta ttctccgttc cggttgtgaa gcagaaggta 1741 acaggtcatt tccccgttac caggcatggg ggcctcgcca taccccgtaa cgactgcgct 1801 cagtacccct gaatccataa cggcattgtc atttttcctg agctgttccg ctcgtcgctc 1861 cgcgcgacta cgttctgtat cctcctgctc cttccggcgc aattcctctt cacgtttaag 1921 caactggact ctgagagctg caaggccgga tgccccccac tgctgccact gtttttcaaa 1981 tgccgtctga ctcgcgggaa tgtcctgttt ctccaccttc cggtaatgct gtcgcaattt 2041 ttccatttgc tggctcagcg actggatttt tccctgttcg ctacggtatt ccggtgccgc 2101 ccattgcatc aggggaatac gggaaaaacc ggacgaaaac ggcgatgatt ttttcaggct 2161 ggcagcatgg ctcatcgctt cctttcgttc ggtgttcagc tcttcccagc gtctgcgcgt 2221 cgcctgcata tctgccatca tcgacatggc attactggtg agtttccatg ccgcattact 2281 gtccttcggc aacgcttcga tgatgtcacg tagtgtgtac gaagttgcgt tgtcaggaag 2341 cacgatattc agaaggtcag ccacacggcg ggcaggctct gtcagcccgc tgtttctgag 2401 ttcggtacgg gaaatctgta tttccaggtt aagtctgtta atcagacgat tctgttcgcc 2461 gcgttctgtt tcgataccgc gtgtttccat cgcacaggca gactttccga ggtgaatacc 2521 aggcgttttc tcaagcccct gtcgctcgta tgaacgatgg tctatctctt cctgataacc 2581 ggcgttcgcc agtgccctgt tcgcatggtc agcccatgat gcacgccacg tctcggcatg 2641 tgtccggtcg ttccagtccc tgacctttcc accgaatcca gcaggtccga cagctctcgt 2701 ggtcagcatg atgtgcgcat ggggatttgt tttatccatg tgatggaacg ccacatcagc 2761 aatcatgccc tgactgacaa agttttctct gacaaaggcg agaacggttt cccgtgcggc 2821 atcctgcggt agttcgcggg ggatggcgag ttcaatttcc cgcgcaagtt gtgagttctt 2881 ccggcgttcg gccttctcaa cggcattcca gagttcggca cggttcgtac accaggcagg 2941 ggctgtcgcg ggagtcagaa tcacagcttc agccacaccg cttttgcggg tgtagtcgtg 3001 agtcagtccg gtacgctcat caagcatcag tgaaccggaa cgataggcag cagaagcaac 3061 ggcgctgtag ccgctgtttc tggagatgat tttcatgctg agatgataaa tcgccatttc 3121 tgccgtaatg cctttttgtg gttttctttc agccccgcag ggcgcacaca atcgaaacgg 3181 agtggagatt gtataagtgc gcacttcgtg attttccgtg cattatgcca gctcagtttt 3241 taaactacca gtgacgcgct aaaatgcgat ttttcatcgc gcacggagtt acatcatgag 3301 cagaacactc gaacagaaga ttgctgatgc tgaggccaga ttacagcgcc tgaaggcgaa 3361 gagcaggagt ctggacacag cgcagaaggt cattgtgggt gcagcattgc tggcaaaggt 3421 cagaaagccg gaggaggtgc agttgcgtgc ctggttactc cagttcctga aggcagaggt 3481 gacacgacag gctgatgtga cgcgcatact accgctgatt aacgagctgg aagcgctgcc 3541 aggacagtga ttgtatcgtc cgctcgccgc agtcccagcg accgagcgtt agcgagcgag 3601 tgggcgagga agcggaagtg aatccgtcgc ctgattgagc acatacgcac ggtttttcgg 3661 gaggtgatat gcgctgaacc cgcatgaata ctggatttcc acagggttgg agggggtgta 3721 ttcggaactt gcaattctgc ttttttgcaa cgcattgttt ttattggttt tttgttttca 3781 gcactccaag ttatccacag gctcgtcgtt aagtttttag atcttgtttt taagatcttg 3841 tttttaatac ttgttttagc gccaaaattc cttatagaaa acaaaatgtt acaacgctat 3901 aggtaatatg atttaaggta aaggtaatat gatttaaggt gtttaggggg aggaatttaa 3961 ggtaaaggca atatgattta aggtaatatt cacagaaaaa gggatattaa aataaaaagg 4021 cattgccttt cgttgagggt atgtttatct tttattcatt accttttggg gagggatgct 4081 ct //