LOCUS NC_011407 6929 bp DNA circular BCT 22-JUL-2009 DEFINITION Escherichia coli SE11 plasmid pSE11-4, complete sequence. ACCESSION NC_011407 VERSION NC_011407.1 GI:209916806 DBLINK Project:18057 KEYWORDS . SOURCE Escherichia coli SE11 ORGANISM Escherichia coli SE11 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 6929) AUTHORS Oshima,K., Toh,H., Ogura,Y., Sasamoto,H., Morita,H., Park,S.H., Ooka,T., Iyoda,S., Taylor,T.D., Hayashi,T., Itoh,K. and Hattori,M. TITLE Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult JOURNAL DNA Res. 15 (6), 375-386 (2008) PUBMED 18931093 REFERENCE 2 (bases 1 to 6929) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-OCT-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6929) AUTHORS Hattori,M., Oshima,K., Toh,H., Sasamoto,H. and Shiba,T. TITLE Direct Submission JOURNAL Submitted (21-OCT-2006) Contact:Masahira Hattori Graduate School of Frontier Sciences, University of Tokyo; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan URL :http://www.cb.k.u-tokyo.ac.jp/hattorilab/ COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AP009244. This work was done in collaboration with Yoshitoshi Ogura, Tadasuke Ooka, and Tetsuya Hayashi (University of Miyazaki), Sang-Hee Park and Kikuji Itoh (University of Tokyo), and Hidetoshi Morita (Azabu University). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6929 /organism="Escherichia coli SE11" /mol_type="genomic DNA" /strain="SE11" /db_xref="taxon:409438" /plasmid="pSE11-4" gene 1..309 /locus_tag="ECSE_P4-0001" /db_xref="GeneID:6998234" CDS 1..309 /locus_tag="ECSE_P4-0001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002290998.1" /db_xref="GI:209916807" /db_xref="GeneID:6998234" /translation="MTEKLKGTASVLHQTKTYEELVQKHSVEVANGLLANAINTALPN AGITSNDVAGFSKVTIALRTGEVDLAKTAEEANADAAAVSANIIAGLKASQKSKDEIK" gene complement(488..1180) /locus_tag="ECSE_P4-0002" /db_xref="GeneID:6998225" CDS complement(488..1180) /locus_tag="ECSE_P4-0002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002290999.1" /db_xref="GI:209916808" /db_xref="GeneID:6998225" /translation="MHLLYVDESGTPSDPTLNHFVLSGISVFEKQTHWIEQEMNAIAA RFNADDPYERELHGSPMRGGRDGWKKFPFDDRKQAIKDCLTLLTQKHRDIRIFACVVP KGSLGGKDVITESFYQISSRFDMYLSRLHHQGATSRGVAIFDKSSTEKSIQSLARTFK DTGYGYGKLRNFSEVPLFLDSKASRLIQLADLVSYSIFRKFELNDDEFYKIIENSFDY NNGKVHGLYVAH" gene complement(1294..1491) /locus_tag="ECSE_P4-0003" /db_xref="GeneID:6998226" CDS complement(1294..1491) /locus_tag="ECSE_P4-0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002291000.1" /db_xref="GI:209916809" /db_xref="GeneID:6998226" /translation="MICCWFWLTAAPFAAKLSGAVRATDVMVNKSDDEATIRLNLCYL IAHDYDMCINYLGKYAFACYH" gene complement(1616..3169) /locus_tag="ECSE_P4-0005" /db_xref="GeneID:6998227" CDS complement(1616..3169) /locus_tag="ECSE_P4-0005" /codon_start=1 /transl_table=11 /product="mobilization protein MobA" /protein_id="YP_002291001.1" /db_xref="GI:209916810" /db_xref="GeneID:6998227" /translation="MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELI DATPFAKKYTSGVLSFAEKELPPGGREKVMESFERVLMPGLEKNQYSILWVEHQDKGR LELNFVIPNMELQSGKRLQPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRTLTLP DNLPETKQALAESVTRGLEVLYHAGEIKGRQDVIQALTEVGLEVVRVTRSSISIADPN GGRNIRLKGAFYEQSFTDGRGVREKAERESRIYRENAERRIQQARRICKRGCDLKRDE NQRRYSPVHNVDRGIAEKTPGRGERGDDAAPEGHVKAGREFGHEVAGDSLSPVYREWR DALVSRREDTDEPGRNQGTGRDIAETEREDMGCGVCSGRGKKISGHSARDVSRGDALS GEGLDTTDGVIRNDRAGNTFTERLRAAATGLYAAAERMGERLRGIAEDVFAYATGQRD AERAGHAVESAGAALERADRTLEPVIQRELEIREERLIHEREHALSLERERQLEIQER TLDGPSLSL" gene complement(1963..2481) /locus_tag="ECSE_P4-0004" /db_xref="GeneID:6998229" CDS complement(1963..2481) /locus_tag="ECSE_P4-0004" /codon_start=1 /transl_table=11 /product="mobilization protein MobB" /protein_id="YP_002291002.1" /db_xref="GI:209916811" /db_xref="GeneID:6998229" /translation="MSNLLRTGAEFEKKLKERAESTEKMLNDEFSRLGESVSEAVTSN ETKIKDAIALFTTSTEESLKKHREGVKEAMMQHRKDMLKLAGSSGMRLLGIVFLLFTA SGGTLWYLGGRIQTNLEEIRVQEETLRKLNAKTWGVEFVQGGGRKFLVIPQGMSAEVT HYQGKDWIQLTE" gene complement(3159..3482) /locus_tag="ECSE_P4-0006" /db_xref="GeneID:6998228" CDS complement(3159..3482) /locus_tag="ECSE_P4-0006" /codon_start=1 /transl_table=11 /product="mobilization protein MobC" /protein_id="YP_002291003.1" /db_xref="GI:209916812" /db_xref="GeneID:6998228" /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPT LAPPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIEGELRSLRQVVREQG ARDDC" gene 3548..3739 /locus_tag="ECSE_P4-0007" /db_xref="GeneID:6998230" CDS 3548..3739 /locus_tag="ECSE_P4-0007" /codon_start=1 /transl_table=11 /product="RNA I inhibition modulator protein Rom" /protein_id="YP_002291004.1" /db_xref="GI:209916813" /db_xref="GeneID:6998230" /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDH ADELYRSCLARFGDDGENL" gene complement(4040..4195) /locus_tag="ECSE_P4-0008" /db_xref="GeneID:6998231" CDS complement(4040..4195) /locus_tag="ECSE_P4-0008" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002291005.1" /db_xref="GI:209916814" /db_xref="GeneID:6998231" /translation="MSVGFCDARQGGGAYGKTPAAWPFVALCLFAHMFFPALSPDSVD NRITAFE" gene complement(4749..5423) /locus_tag="ECSE_P4-0009" /db_xref="GeneID:6998232" CDS complement(4749..5423) /locus_tag="ECSE_P4-0009" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002291006.1" /db_xref="GI:209916815" /db_xref="GeneID:6998232" /translation="MRTIVYVDGFNFYHGLVKRSGYKWLDLYKLFEEQLLPIRARESQ LIQVKFFTAEIKAKFATRGELAHQAQQAYHRALLQIYGEKLQIIKGYYSERQECAMTF NEGYPPSKTDRTTVWKLEEKQTDVRMALEMYRDAIRGEAEQLVLCTNDSDMIPPIEMI KADRPELKIGIVVPREQDTSRVISSLASLGDWSLPYVSYEALRLALLPDKVPTRRKPI LKPNHW" gene 5771..6187 /locus_tag="ECSE_P4-0010" /db_xref="GeneID:6998233" CDS 5771..6187 /locus_tag="ECSE_P4-0010" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002291007.1" /db_xref="GI:209916816" /db_xref="GeneID:6998233" /translation="MSDQKNNFDLQKQTLESKWGKEALSMGWSAIPTSLFFLQGALNM TPTTFNVLLHLIIHWWKPYDWPHPSQESIAVRMGVSSRTVQRSLQELENYGLLTKIRT SKDNPKYKGRNIYDMSLLVKSLNILTPDLNAKLNEK" ORIGIN 1 atgaccgaga aactaaaagg aacggctagc gttctgcatc aaaccaaaac ttatgaggaa 61 ttggttcaga agcattcagt agaagtcgct aacggcttgc tggcaaatgc gataaatact 121 gctttgccta acgcaggaat aacttcaaat gacgttgccg gattcagtaa ggtaacgata 181 gccttgcgca caggagaagt tgatctagcc aaaacagcgg aagaagcgaa cgctgatgcg 241 gcagctgttt cagcaaatat tattgcggga ttgaaagcat cacaaaagag caaggatgaa 301 ataaagtgat tatcagcggg gtaaaaagcc acctgaatgg tggctttttt atatccataa 361 cgggctgtac tcactataac atccgttgtg cgatgctaat gagaaatgca acgtaggctc 421 tgcatcgata gaaaatggtg gccacagcgg catctgactc ggagacaaac tctccacagc 481 gattcaatta gtgagctacg taaagtccgt gaactttacc attattgtag tcaaaggaat 541 tctcaataat cttgtagaac tcatcatcat tgagctcaaa cttcctgaaa attgagtatg 601 atacaagatc cgcaagctga atcagccttg acgctttgga atccaaaaac aaaggcactt 661 cagagaagtt acgaagtttt ccatatccat atccagtatc tttaaacgta cgagcaagag 721 actgaatact tttctctgtt gacgatttat caaaaatggc cacccctcga gatgttgctc 781 cttggtgatg taagcggctc aaatacatgt cgaaacgaga cgatatctga taaaaagatt 841 ctgttattac gtcctttcca cctaaggatc ccttgggtac aacacacgca aatatacgga 901 tatcccgatg cttttgagtc aggagtgtta ggcaatcttt gatcgcttgt tttctgtcat 961 cgaaaggaaa ttttttccag ccatctcgcc cacctctcat aggcgaacca tgcaattctc 1021 tttcatacgg atcatcagca ttaaatctgg ctgcgatagc attcatctct tgctctatcc 1081 aatgagtctg cttttcaaac actgagatac cagaaaggac aaaatgatta agtgtagggt 1141 ctgatggtgt accagactca tcaacgtata agagatgcat cgaagattcc ttaaacgaaa 1201 aaggccgcgc atttgcgcgg ccttttcatg aattaggcaa gccagtgcga taaaaatcgc 1261 atacaccgct atgggcagcg aactgactca gttttaatga taacaggcaa acgcatattt 1321 acccaaataa tttatacaca tatcataatc atgagcaatt aaataacata aattcaatcg 1381 gatagttgct tcatcgtcac tcttatttac cataacatcc gttgcccgca ccgccccgga 1441 cagcttcgcc gcgaacgggg cggcagtcag ccaaaaccaa caacaaatca cccgaaaagc 1501 taccgcgatc gcgcctgata aattttaacc gcatgaatac ctatgcaacc agatggtgca 1561 gactacatta gtccgtcaaa atccactgaa cctgccattt tttatagttt cgccatcaca 1621 gcgacaacga aggaccatcc agtgtgcgtt cctgtatttc cagctggcgt tcccgttcca 1681 gggataacgc atgttcgcgc tcatgtatca gccgttcctc tcttatctcc agttctcgct 1741 gtataactgg ctcaagcgtt ctgtctgccc gctcaagtgc tgcacctgct gactcaactg 1801 catgacccgc tcgttcagca tcgcgttgtc ccgttgcgta agcgaaaaca tcttctgcaa 1861 ttccacgaag gcgctctccc attcgttcag ccgctgcata tagtcctgtt gcagctgctc 1921 taaggcgttc agtaaatgtg tttccagctc tgtcattccg tatcactccg tcagttgtat 1981 ccagtccttc ccctgatagt gcgtcacctc tgctgacatc ccttgcggaa tgaccagaaa 2041 ttttcttccc ccgccctgaa caaactccac accccatgtc ttcgcgttca gtttccgcaa 2101 tgtctcttcc tgtaccctga tttcttccag gttcgtctgt atcctcccgc cgagatacca 2161 gagcgtcccg ccactcgcgg taaacaggag aaagactatc cccagcaacc tcatgcccga 2221 actccctgcc agctttaaca tgtccttccg gtgctgcatc atcgcctctt tcaccccttc 2281 ccggtgtttt ttcagcgatt cctctgtcga cgttgtgaac agggctatag cgtctttgat 2341 tttcgtctcg tttgaggtca cagcctcgct tacagattcg ccgagcctgc tgaattcgtc 2401 gttcagcatt ttctctgtag attcggctct ctctttcagc tttttctcga actccgcgcc 2461 cgtccgtaaa agattgctca taaaatgctc ctttcagtct gatattcctc ccgccgttcg 2521 ggtctgcaat gctgatactg cttcgcgtca ccctgaccac ttcaagcccc acctctgtga 2581 gcgcctgaat cacatcctga cggcctttta tctccccggc atggtaaagc acctccaggc 2641 ctcgtgtaac gctctcagca agcgcctgtt tcgtttccgg caggttatca gggagggtca 2701 gcgttctgcg gttctccggg gcgttggggt catgtagccc gtaatggtga ttcaccagtg 2761 tctgccaggc atcaattctc ggcctgtctg cccggtcgta gtacggctgg aggcgttttc 2821 cgctctgtag ctccatgttc ggaatgacaa aattcagctc aagacgcccc ttgtcctggt 2881 gctccaccca cagaatgctg tactgatttt tttcgagacc gggcatcagt acgcgctcaa 2941 agctctccat cactttttca cgtcctcccg gcggcagttc cttctctgcg aacgacagaa 3001 caccggacgt gtatttcttc gcaaatggcg tggcatcgat gagttccctg acttcttccg 3061 gattaccctg aagcaccgtt gccccttccc ggttacgctc ccttcccagc aggtaatcaa 3121 ccggaccact gccaccgcct tttcccctgg catgaaattt aacaatcatc ccgcgctccc 3181 tgctccctga cgacctgccg taagctgcgc aactctccct cgatggccat cagtgcggcc 3241 accacctgaa cccggtcacc ggaagaccac tgcccgctgt ttaccttcct cgctgtctga 3301 ttcaggttat tcccgatggc agccagctga cgcagtaacg gcggtgccag tgtcggcagc 3361 ttcccggaac gggcaaccgg ctcacccagg cagacccgcc gcatccatac cgccagttgt 3421 ttaccctcac agcgttccag taaccgggca tgttcatcat cagtaacccg tatcgtgagc 3481 atcctctcgc gtttcatcgg tatcattacc cccatgaaca gaaccccccc cttacacgga 3541 ggcatcagtg actaaacagg aaaaaaccgc ccttaacatg gcccgcttta tcagaagcca 3601 gacattaacg ctgctggaga agctcaacga actggacgcg gacgaacagg cagatatctg 3661 tgaatcgctt cacgaccacg ctgatgagct ttaccgcagc tgcctcgcgc gtttcggtga 3721 tgacggtgaa aacctctgac acatgcagct cccggagacg gtcacagctt gcctgtgagc 3781 ggatgccggg agcagacaag cccgtcaggg cgcgtcaggg ggtttcgggg cgaagccctg 3841 aaccagttac gtagcgatag cggagtgtat actggcttaa ccatgcggca tcagtgcaga 3901 ttgtatgaaa agtgcgccat gccgggtgtg aaatgccgca cagatgcgta aggagaaaat 3961 gcagcatcag acgctcttcc gcttcctcgc tcactgactc gctacgctcg gtcgttcggc 4021 tgcggcgagc ggtgccggct cactcaaagg cggtaatacg gttatccaca gaatcagggg 4081 ataaggccgg aaagaacatg tgagcaaaaa ggcaaagggc aacgaaaggc cacgccgctg 4141 gcgtttttcc ataggctccg cccccctgac gagcatcaca aaaaccgacg ctcaagtcag 4201 aggtggcgaa acccgacagg acttaaagat accaggcgtt tccccctggt ggctccctcg 4261 tgcgctctcc tgttccgacc ctgccgctta ccggatacct gtccgccttt ctccctttgg 4321 gaagcgtggc gctttctcat agctcacgct gttggtatct cagttcggtg taggtcgttc 4381 gctccaagct gggctgtgtg cacgaacccc ccgttcagcc cgaccgctgc gccttatccg 4441 gtaactatcg tcttgagtcc aacccggtaa gacacgactt atcgccactg gcagcagcca 4501 ctggtaacag gattcacgga gcggagtagt agagtgttct acagagttct tgaagtggtg 4561 gcctgactgc ggctacactg gaaggacagt tttggtacct gcgctccgtg aaagccagtt 4621 accttcggaa gaaagagttg gtagctcttg attccggcaa acgaaccacc gttggtagcg 4681 gtggtttttt tgtttgcagg gcatgagatt acgacgagag taaaaggatc acaagaagat 4741 ccggctgttt accagtgatt tggcttcagt attggtttcc gcctagtggg aaccttatct 4801 ggcaatagcg ctaatctcaa agcttcgtag gatacatatg gcaggctcca atcccctaaa 4861 ctagccagac tactaatcac tcgactagta tcttgctccc ttggcactac aattccaatt 4921 ttcaattcag gtcgatcggc ttttatcatt tctattggcg gtatcatatc cgaatcgtta 4981 gtacagagaa ccaactgctc tgcctcacca cgaatcgcat cgcgatacat ttctaaagcc 5041 attctaacgt cagtctgctt ttcttctaac ttccagaccg ttgttctatc cgttttcgat 5101 ggaggatacc cctcattgaa ggtcatcgca cattcctgac gttctgagta gtaacctttg 5161 attatttgta gcttctcgcc ataaatctgc agtaatgctc gatggtaagc ttgctgagcc 5221 tggtgagcta actcacctcg agtagcaaat ttagctttga tctcagcagt aaagaacttc 5281 acctgaatca actgtgactc tcttgctctt atcggaagta gttgttcttc aaagagctta 5341 taaaggtcca gccacttata ccccgaacgt ttgaccaatc catggtaaaa attgaaccca 5401 tctacgtaaa ctattgttct cattttattt cgcgcataaa aaaaccgcct ctaagggcgg 5461 ttttaacaac aaaaactaac gttagcaaac agtttaagtt gtagttcctc agggttaaaa 5521 ctaaccaaga gggcggtttc aagctcctaa aggaagacgc gtaacctaat cgctgcccac 5581 ctaaagggag gtttagagcc tcaagggagc tgcgtaactt aatcgcgcta ccaagaggtg 5641 agtgtagatt aagtatagtt aaatataatg atattataag cgcgttggtg tcgtactaat 5701 tatatgaatt aatttaccaa cctgctaagc tgaagtcttc atagaagact tcagcttagc 5761 aggttggtat atgtcagatc aaaaaaataa ttttgacctt caaaaacaga cacttgaatc 5821 aaaatgggga aaggaagcat taagcatggg ctggtcagct attcctacat cccttttctt 5881 cttacagggt gcactcaata tgacacccac aacattcaat gttttactcc atctaattat 5941 ccactggtgg aaaccctacg attggccaca cccctctcag gagagcattg cagttagaat 6001 gggtgtttca tcaagaacag tacaacgctc actccaagag cttgaaaact acggattgct 6061 tacaaaaatt cgtacaagta aggacaaccc taagtacaaa ggaagaaaca tttacgatat 6121 gtctcttttg gttaagtcac taaatattct tactcctgac cttaacgcca aactgaacga 6181 aaaataaccg caacatacat ttaaaatcag gccaccgtcg tagcagattt accatgtatc 6241 aggtctgtat cgcggactcc gacaagatga acaggggatt gcctgtacac tccacactca 6301 ccatcgccca aaatttaacc acaacgaaat gcactctaag atagtgcttt acaaggaaaa 6361 catcttaata atatatttgc taaataagat taatgtttaa tggaaagcct taaatgcctg 6421 gaaaaaagtg ccccttctgt aacaagctga ccctcttcgg aaatagctgt acttcttgca 6481 atgctgtagt gagaacacca ccaaacgaag gccggggcgg aagaggtaag caatgtccat 6541 tttgtaagac aatgacactg ttcaaagatg gaacgaatgg ttccctaaaa tgctccatgt 6601 gtcagcgtaa gttttcccaa tcgtaagggt gaaaaatgtc acatccagta ggaaagcaca 6661 tatcgaaaga gcaagaacac gaacttaatt actggctaaa aaagaggggg ttcaaagaga 6721 gtaaagaaaa cagaacatca ctagtgtggc tgattgaatc agcgaagcta ggcctaggaa 6781 tgcctagcaa tgagcatctc gagcatgccg aattagataa atactttgaa gataacaaag 6841 ggttatggat tgacgaattt gagacaaaat aatctctgtt acatctgaga taaatcccac 6901 atctaaatta tcacagacaa gaggtttac //