LOCUS NC_011316 4327 bp DNA circular BCT 13-JUL-2009 DEFINITION Aliivibrio salmonicida LFI1238 plasmid pVSAL43, complete sequence. ACCESSION NC_011316 VERSION NC_011316.1 GI:215538592 DBLINK Project:30703 KEYWORDS complete genome. SOURCE Aliivibrio salmonicida LFI1238 ORGANISM Aliivibrio salmonicida LFI1238 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio. REFERENCE 1 (bases 1 to 4327) AUTHORS Hjerde,E., Lorentzen,M.S., Holden,M.T., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. TITLE The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay JOURNAL BMC Genomics 9, 616 (2008) PUBMED 19099551 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4327) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (02-OCT-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4327) AUTHORS Hjerde,E. TITLE Direct Submission JOURNAL Submitted (26-JUN-2008) Hjerde E., Department of Molecular Biotechnology, University of Tromso, Breivika, 9037 Tromso, NORWAY COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FM178384. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4327 /organism="Aliivibrio salmonicida LFI1238" /mol_type="genomic DNA" /strain="LFI1238" /isolation_source="Atlantic cod" /db_xref="taxon:316275" /plasmid="pVSAL43" /country="Norway:Hammerfest" gene 281..940 /gene="repA" /locus_tag="VSAL_p43_01" /old_locus_tag="pVSAL43_01" /db_xref="GeneID:6962657" CDS 281..940 /gene="repA" /locus_tag="VSAL_p43_01" /old_locus_tag="pVSAL43_01" /codon_start=1 /transl_table=11 /product="putative replication initiation protein" /protein_id="YP_002265403.1" /db_xref="GI:215538593" /db_xref="GeneID:6962657" /translation="MNNLSVTKSNNLVDASYKLNVQAQKLILACLGKIDSRAEIPNEI TITAIEYGDLMGISNARRDLYKAADHLFDAVITLKDNNEEIKLRWVQKSVLKKKGEGS VTITWSDDVLKYISVLKNRFTTYKLRHISELKSGHSIRLYELLMRFNSTGARIISIAD FKSALGVSDKYPQFKELTRRVINPAIDELNKSSDLIVQYESLKKGKTVTALAFSFTQK D" misc_feature 281..925 /gene="repA" /locus_tag="VSAL_p43_01" /old_locus_tag="pVSAL43_01" /inference="protein motif:HMMPfam:PF01051" /note="HMMPfam hit to PF01051, Initiator Replication protein, score 3e-54" gene complement(1028..1993) /locus_tag="VSAL_p43_02" /old_locus_tag="pVSAL43_02" /db_xref="GeneID:6962656" CDS complement(1028..1993) /locus_tag="VSAL_p43_02" /old_locus_tag="pVSAL43_02" /EC_number="2.3.1.-" /inference="similar to sequence:UniProt:P23214" /note="Weakly similar to Bacteriophage Sf6 O-acetyl transferase UniProt:P23214 (333 aa) fasta scores: E()=4.2e-11, 28.614% id in 339 aa" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_002265404.1" /db_xref="GI:215538594" /db_xref="GeneID:6962656" /translation="MIKNNFDILRIVLALIVMLFHIGGLANIPVLTFFPGGLAVKCFF VISGFLITKSYLKNNGIKTYIKSRFMRVYPLYFVVIITSFLIGLVITSYDYHTYLVES LRYLASNLVFLNFLQPTLPGVFTDIGNHSAVNGSLWTIKVEVMFYISIPIIYGFFTKF FSKEKLTILIFILSVSCFYVLSYIINEYGLNKSVNNQLPSLMSYFMVGAYLSFVGLNS KYIKGLLLPSLLGIYSSIELFMPLSVGILTAYLAFYTPQIKVDKKVGDLSYGIYIWHF PVIQLYLYLGLFSSPLLGVFMVTLTVGALAYISWHYLENRIIHRY" misc_feature complement(1034..1987) /locus_tag="VSAL_p43_02" /old_locus_tag="pVSAL43_02" /inference="protein motif:HMMPfam:PF01757" /note="HMMPfam hit to PF01757, Acyltransferase family,score 1.6e-25" misc_feature complement(order(1055..1123,1136..1195,1232..1300, 1343..1402,1439..1498,1526..1585,1622..1681,1709..1777, 1838..1906,1916..1975)) /locus_tag="VSAL_p43_02" /old_locus_tag="pVSAL43_02" repeat_region 2094..3532 /note="VSa9" gene 2287..3366 /locus_tag="VSAL_p43_03" /old_locus_tag="pVSAL43_03" /db_xref="GeneID:6962655" CDS 2287..3366 /locus_tag="VSAL_p43_03" /old_locus_tag="pVSAL43_03" /codon_start=1 /transl_table=11 /product="transposase, IS91 family" /protein_id="YP_002265405.1" /db_xref="GI:215538595" /db_xref="GeneID:6962655" /translation="MLSCGTAAFGSREYHCCNPDCTHIKYIHQTCKSRACSSCGMKAT ERWIQKQQHVFPECEYQHITFTLPNTLWPIFRHNRWLLNKLFKCAANILLGWAKDKGI DVGIFCALHTYGRKLNWNTHLHLSVTRGGICERTGLWKPIYFQMKTTEPCWRAAIVSL LGKAYYELDLSSEECPYIRNKTDWSRFLSSQYNRRWKLHFAKKTNNVKPTMNYLGRYL KRPPISASRLSHYAKGGMITFNYLDHRTGTTDSLTLSPEEMIRRIVEHYPDKHFKMIR YYGFLSMRRRGEALPRVYAALGMTIEAEPKMPGYAAMLKGYVKVDPYECILCESRLVF TNFRVGNSVNDLVTHAIVQSELRAA" misc_feature 2599..3156 /locus_tag="VSAL_p43_03" /old_locus_tag="pVSAL43_03" /inference="protein motif:HMMPfam:PF04986" /note="HMMPfam hit to PF04986, Putative transposase, score 6.2e-49" ORIGIN 1 gtctaaatag ttatttatcc acaggcgttt tcctttttaa tctttcttgt ttatagatct 61 ttcttgtttt tagcatcgct gtagcccttg ctgcataagg gctacagcga tattaggtgt 121 acaaattgac acgctaaacg acggtttagg tgtacaaatt gacacgctaa atggcttttt 181 aggtgtacaa attgacacgc taactcacaa agttgggtgt acgtcgtttt agttcgtaca 241 cttatgtgta tagtgaataa aaaaatagac tggtttaaat atgaataatc tctcagtaac 301 caaatcaaat aatcttgtag atgcgagtta taaattaaat gttcaagcac aaaaacttat 361 tttagcctgc ttagggaaaa tagattctag agctgaaatt cctaacgaaa ttactattac 421 cgcaatagaa tatggtgatt taatgggtat tagtaatgcg cggagagatc tatataaagc 481 ggcggatcat ctctttgatg cggtaataac attaaaagat aataacgaag aaataaagtt 541 aagatgggtt caaaaaagtg tactaaaaaa gaaaggtgag ggttctgtta ctattacatg 601 gtctgatgat gttttaaaat atattagcgt acttaaaaat agatttacta catacaaatt 661 gcggcatata tccgaattga aatcaggaca ttccattcga ctgtatgagt tattaatgcg 721 atttaattct actggggcta gaattatttc tattgctgat tttaaatcgg cattaggtgt 781 tagtgataaa taccctcaat ttaaagaatt aacacgtagg gttatcaacc cagctattga 841 tgaattaaat aaaagtagtg atcttatcgt tcaatatgaa tcccttaaaa agggtaaaac 901 agtaactgct ttagcattct cgtttacaca aaaggattaa gtttattgat tgataaccat 961 aaacttaata ctagaaaagg tcgccaattt taggcgacct ttgcggttcg tgatacgagc 1021 attatgttca ataacgatga ataatcctat tttctaagta atgccagctt atataagcta 1081 aagctccaac agttaaagta accataaata cacccaatag cggagaagag aacaacccta 1141 agtatagata aagctgaatt actggaaaat gccaaatata aatgccatat gataaatctc 1201 ccaccttttt atcaacttta atttgcggtg tatagaaagc aagataagca gtcaagatcc 1261 caactgacag tggcataaat aattctatac tagagtatat acccaggagg gaaggcagga 1321 gtaagccttt gatatacttg gaatttaaac caacaaaact taagtatgcc cctaccataa 1381 aataagacat gagtgatggt agttgattgt taacagattt gttcaaacca tattcgttaa 1441 taatgtacga taagacataa aagcaagaaa cagacagtat aaaaattaaa atcgttagtt 1501 tttcttttga aaagaacttt gtgaaaaaac cataaataat tggtatagat atataaaaca 1561 taacttcaac tttgattgtc caaagcgatc cattaacagc actatggttg cctatatcag 1621 taaaaacacc tggtaatgtg ggttgaagga agtttaaaaa aacaaggtta gaagctaagt 1681 atctcaacga ctccaccaag taagtatgat aatcgtaaga tgtaattact aagccaatca 1741 aaaatgaagt gataataacc acaaaatata atggatagac cctcataaac ctagatttta 1801 tataagtttt tataccatta ttttttaaat aactctttgt gatcaaaaaa ccacttatta 1861 caaagaagca cttaacagcc aaacctcctg gaaaaaacgt caaaacaggt atgtttgcca 1921 acccgccaat atgaaaaagc atcacaatta atgctagaac aatccttaat atatcaaaat 1981 tattttttat cattactaaa agactataga aaaaagttag ttcacattgt atagccttac 2041 gacaagcaat tatagataac acaagggaat acatgcgtga tatgcccctt atggaacaat 2101 aggcgcctac ggcgcaaatc aaaaggactc aacctcttcc attgttgcca ataaatcgtt 2161 tatcctatcg ccatgcacgc atataaaccc ctgaaacaat tatttaatag tcaaaataac 2221 tggcttaaat ttcttcataa taacaaagct aacctaagag cggtcgtgat tgaaaatgtc 2281 acaaagatgc tgtcctgtgg gacagcggct tttggctctc gcgaatatca ttgttgcaac 2341 cctgactgta cccatatcaa atatattcac caaacctgta aatctcgagc gtgcagtagc 2401 tgtggcatga aagccacaga gcgatggata caaaagcaac aacatgtctt ccctgaatgc 2461 gaatatcaac acatcacctt tacccttcca aacacgctat ggcctatctt tcgtcataac 2521 cgttggctgt taaataaatt attcaaatgt gctgcaaaca ttctgctggg atgggcaaaa 2581 gataaaggaa tagatgtcgg tatcttttgt gctcttcata cttacggtcg aaaactgaat 2641 tggaatacgc acttacattt atcggtcact cgtgggggaa tttgtgaacg taccggttta 2701 tggaaaccca tttacttcca aatgaaaacg acagagcctt gttggagagc ggctatcgtc 2761 agtttattgg gtaaggctta ttatgagctt gatttatcaa gcgaagaatg cccctatatc 2821 cgtaataaaa cggattggtc acgcttttta agcagtcaat ataatcgtcg ttggaagctt 2881 cattttgcta aaaagacaaa taatgtaaaa ccgacgatga actatcttgg tcggtattta 2941 aaacggcccc caatttcagc gtcacgttta agtcattacg ccaaaggcgg aatgataacg 3001 tttaattatt tagaccatcg aacaggaaca acagacagcc taacattatc accagaagag 3061 atgataagac ggatagtaga gcactatcct gataaacatt tcaagatgat ccgatactac 3121 ggttttttat caatgcgtcg tcgtggagaa gctctgccta gagtttatgc agctttaggt 3181 atgacaatag aagctgagcc gaaaatgcca gggtatgccg caatgttaaa aggatatgta 3241 aaagtagatc cgtacgaatg tattttatgt gaaagtcgtc tggtgtttac gaatttccga 3301 gtcggaaatt cggtcaatga tttagtcacc catgcgatag ttcagtcaga attgagggca 3361 gcataataag gtttgtagga taagtgtatc taaaactcat gaaatagggc taaaacagtt 3421 ataaaatccc cgataattat attttcgata ccttttaaaa aaacagcgat ggtgaaattg 3481 gcttttttag acgggccaat gctaactcag caacattcaa attccttacc ttcaagtatg 3541 ttaccgaaat taatttgacc aattttaacc cgactaaata taatcgttag aaaaagaact 3601 tattccatac acgaaaagca tctaacaaaa ttcaaaacgc atttaatatt tgttcaagat 3661 cgaggatata tttaactcaa aagaagcaaa aaacacgatc actaaaaaat ggccacaaaa 3721 gataaaaaat accgcaaaat ataccaatag aaacagtgat ttatcatttt ttgaggcgtc 3781 tcattaaaaa acagctcaaa aaacaggcac gacaggagtg tttacacttt aaaacttcgt 3841 tttagcgtca ctccctgtgc caaagggtag cccctttgaa accctttttt actccgcatt 3901 ttgacatccg ttttaatcat aatttcagat attgaaaacg ttattttaag agcatcttcg 3961 tagggcgcga ggtgactttt ttagatgggg ttattttgga gaacgcgctc gactttactg 4021 cgcgcatttc gatattggca aaaagcgcct agtatctacg atgttccaaa caagagcatt 4081 acccgtcatt caaaatcaat tctaaggcac atagatgcca tgtagacagc tataacacta 4141 aaaagacata actatgtacc ctttcgttaa tctaacggcc ttagagagct ttacagctct 4201 aaaaaacaaa aaaagaaaat ttattgagcg cggagcgcaa actcaaagcg acaaaacagg 4261 tcaattgacg attgtgggca atgtgtttga taacatgctc catcgttatc aaaacttgcc 4321 catgtga //