LOCUS NC_011315 5360 bp DNA circular BCT 07-MAY-2009 DEFINITION Aliivibrio salmonicida LFI1238 plasmid pVAL43, complete sequence. ACCESSION NC_011315 VERSION NC_011315.1 GI:209809832 DBLINK Project:30703 KEYWORDS complete genome. SOURCE Aliivibrio salmonicida LFI1238 ORGANISM Aliivibrio salmonicida LFI1238 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio. REFERENCE 1 (bases 1 to 5360) AUTHORS Hjerde,E., Lorentzen,M.S., Holden,M.T., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. TITLE The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay JOURNAL BMC Genomics 9, 616 (2008) PUBMED 19099551 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5360) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (02-OCT-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5360) AUTHORS Hjerde,E. TITLE Direct Submission JOURNAL Submitted (26-JUN-2008) Hjerde E., Department of Molecular Biotechnology, University of Tromso, Breivika, 9037 Tromso, NORWAY COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FM178383. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5360 /organism="Aliivibrio salmonicida LFI1238" /mol_type="genomic DNA" /strain="LFI1238" /isolation_source="Atlantic cod" /db_xref="taxon:316275" /plasmid="pVAL43" /country="Norway:Hammerfest" gene 346..1212 /gene="repZ" /locus_tag="VSAL_p54_01" /old_locus_tag="pVSAL54_01" /db_xref="GeneID:6989608" CDS 346..1212 /gene="repZ" /locus_tag="VSAL_p54_01" /old_locus_tag="pVSAL54_01" /inference="similar to sequence:UniProt:Q7DJZ7" /note="Weakly similar to Plasmid ColIb-P9 Replication initiation protein RepZ UniProt:Q7DJZ7 (343 aa) fasta scores: E()=0.06, 24.111% id in 253 aa" /codon_start=1 /transl_table=11 /product="putative replication initiation protein" /protein_id="YP_002265400.1" /db_xref="GI:209809833" /db_xref="GeneID:6989608" /translation="MKTTLSPLNTWHPQESLSSEFEVIPLRDRKKKHIPTLNRKIFNT LEKHGAWINSQWPFLVHKLVEVGMRKRNLSFKEVHKRNIENTLRWIAYHSDTVTGCIN VTHLCIEIGKEIGVSSSTISVIMKELVIMGLLYEPEQSGQSIQDIMHDGRLPRTLCTT PLFYEILGIKNDELDRLRSIEIKRREIEYAKRKEKYDADIVLKTYCHSNILRVWEYRH TQSTSSYKIKLADMEPMTRLTYISRKLLERIKAKGWPISTEKEHITKMANNLLRRMGL SVKRSEFAPPIT" misc_feature 658..723 /gene="repZ" /locus_tag="VSAL_p54_01" /old_locus_tag="pVSAL54_01" /note="Predicted helix-turn-helix motif with score 1355.000, SD 3.80 at aa 105-126, sequence HLCIEIGKEIGVSSSTISVIMK" gene complement(1648..2388) /locus_tag="VSAL_p54_02" /old_locus_tag="pVSAL54_02" /db_xref="GeneID:6989604" CDS complement(1648..2388) /locus_tag="VSAL_p54_02" /old_locus_tag="pVSAL54_02" /inference="similar to sequence:UniProt:Q6XGE7" /note="Similar to Escherichia coli MobC-like protein UniProt:Q6XGE7 (248 aa) fasta scores: E()=0.0018, 25.692% id in 253 aa" /codon_start=1 /transl_table=11 /product="putative mobilization protein" /protein_id="YP_002265401.1" /db_xref="GI:209809834" /db_xref="GeneID:6989604" /translation="MLITDPIYRAEQAIKNRNTVMIFLSHHRYSTLENIRYELGMKSK ASASRILKKLCQEGHVKKEELSDNITNVTLFGVTRKGLDTYHFNLDNNKSFLKSRVSL RTLNHTLTNQKVGSLLKKSARLTDVRVINAEIGNFKQYEHIMKFKHRPDLVLVGKTKT DIVVHVIETELTLKDSKRYNPILKEYLQLRRINKISTVWYFVKNEKAKERLRQMMDKL KYKLIKHRDEREVWDHLFRIETIALLGK" gene 3432..5360 /locus_tag="VSAL_p54_03" /old_locus_tag="pVSAL54_03" /db_xref="GeneID:6989606" CDS 3432..5360 /locus_tag="VSAL_p54_03" /old_locus_tag="pVSAL54_03" /EC_number="2.3.1.-" /inference="similar to sequence:UniProt:P74874" /note="Weakly similar to Salmonella typhimurium O-antigen acetylase OafA UniProt:P74874 (609 aa) fasta scores: E()=6.3e-54, 33.591% id in 646 aa" /codon_start=1 /transl_table=11 /product="acyltransferase" /protein_id="YP_002265402.1" /db_xref="GI:209809835" /db_xref="GeneID:6989606" /translation="MNFRYDINGLRAIAVIAVVLFHFNPAWVPGGFAGVDVFFVISGF LMTSIIFRGLDNDNFNLFKFYVARANRIIPALAVLCLVLMVFGWFYLNPLDYKALGKH VASSMGFLSNIIYWRESGYFDAASHEKWLLHTWSLSVEWQFYIIYPIVLVALKKFLSL ENLKRLIVIGTVLGFCLSVIATMKWPNPAYYLLPTRAWEMMMGGVAFLYPWNLSESKK KIIEVTGLALILGSYAFVSSDVSWPGYLALLPVLGAYLVIVANQQSSFITNNYLFQNL GKWSYSIYLWHWPVVVAGIFFEYKSFELAGVFLSVVLGFLSFKFIESANFPSFERWSD ALKVKPLHFTLMLGFIGSLVFVFRPNQFLFPMKESVLNSIERKPYECFDKEMMHENDD VVCQLTKGESAILAIGDSHSYSSLPAIESIAKSNNLELYYTGFNGCPPIIGVSPIRGD QHLKNCKILNQRALDFALGKQVKTVFLAARWTYYTEGTYSKTGVQYLTIDNNERGLDV SKRALMTGLKDTFKAYFDNGINVVVMLQVPMQKHDPDKIYYRSISNGKLLTSKLAKNS ISLEEHVKFQFETNHLIKSLAVSYPNVTIYDPTSDMCVEGQCLVGSVDVSYYFDDDHL SILGARKLVEPISKFLVD" misc_feature 3441..4415 /locus_tag="VSAL_p54_03" /old_locus_tag="pVSAL54_03" /inference="protein motif:HMMPfam:PF01757" /note="HMMPfam hit to PF01757, Acyltransferase family,score 2.9e-55" misc_feature order(3450..3503,3516..3584,3645..3704,3822..3890, 3927..3980,4149..4208,4269..4328,4341..4409,4443..4502) /locus_tag="VSAL_p54_03" /old_locus_tag="pVSAL54_03" ORIGIN 1 acataaattt cgtatcacga atcgaaaggt cgcctaaatt ggcggccttt ttcgtatatg 61 gacgttacac gatcacgcgc gttctgaact gatttaacga aaataaactg acagggatta 121 acttgatgta tgtgaaaata caatggcgta aaaacaaaaa agccctacgc acttgaagtg 181 cgtagagctt aatgctttaa tagtttccgt tcttagtgct acaacacttt gaacagaggg 241 cagttaagaa cctactaaat tctaactgca ttacacaaac aaaacagact tgcttgagta 301 gttgtgatta tagctatcta gcctgtaatt acaagagacg aatgaatgaa aacgacactt 361 tcccccctaa atacatggca tccgcaagaa tctttaagtt ctgaatttga agttattccg 421 cttcgtgatc gcaagaaaaa acacattcca accctaaacc gaaagatatt caacacgctt 481 gaaaagcatg gtgcgtggat caattcgcaa tggcctttct tggttcataa gttggttgag 541 gtcggtatgc gtaagcgtaa tctctcattt aaagaagtac ataagcgcaa tattgaaaat 601 actttacgtt ggattgccta ccattcagac acggtaaccg gttgtattaa tgtcactcat 661 ttgtgtattg aaattgggaa agagatcggg gtatcgagtt cgaccatttc agtgatcatg 721 aaagagttgg tgatcatggg gctgttgtac gaacctgagc agagtggaca atccatacaa 781 gatattatgc acgatggacg attgccaaga acgctatgca ccactccgct attctatgaa 841 atattaggca tcaaaaatga tgagcttgat cgtttacgct ccattgagat aaaacgacgt 901 gagatcgaat acgcaaaacg aaaagaaaaa tacgacgcag acatcgtcct aaaaacgtac 961 tgtcacagta atattctgcg tgtatgggaa tatcgacata ctcaatcaac ctctagttat 1021 aaaattaaat tggctgatat ggagccaatg actcgcctca cctatatttc acgtaagctg 1081 cttgagcgca tcaaagcaaa aggctggcct atcagcaccg aaaaagagca catcactaag 1141 atggccaaca atctactgcg tagaatgggg ttatctgtta aacgctctga gttcgccccc 1201 ccaataacat aactcttctt attttattac gctcttagct gagtgggtat tcctatgcgc 1261 gtcatttatg gcggtataaa aatcgtacaa aaacagtaaa acacactggt catttacttg 1321 gtattgatgg ggattgttag cctgttttta taagttatac attaatgtcg gaatagccca 1381 ttcttaattc agatatagcc cctttctaaa ccctgctaat attcttttct tatctaattc 1441 aaaattatcc tattccacct atcggtgttg ataaaaagga agcggcctct cgactgctac 1501 gcagtgaggc cttatgtcgg tgtggtaagt gctttttgtc attcgacagg aaagtaatat 1561 tgactttgtt tcttatgggg tcgctttatc gcttcgctat gattctggca tgaaaagaaa 1621 tcaaaattta cagtgtgtgc aaaatggtta tttccccaat aatgcaattg tttctattct 1681 aaataagtga tcccatacct ctcgttcatc tcgatgtttt ataagcttat attttaattt 1741 atccatcatt tgtcttaatc gttctttcgc tttttcattt ttaacaaaat accaaaccgt 1801 gctgatcttg tttattcttc ttaattgaag gtattccttt aaaatagggt tgtatcgttt 1861 actgtctttt aaggtcagct ctgtctcgat aacatgaacg acgatatctg tttttgtttt 1921 tcctactaac acaagatcag gccgatgctt aaacttcata atatgctcgt attgcttgaa 1981 gtttcctatt tcagcattaa tgactctcac atcagtgagt cgagcacttt tttttagtaa 2041 tgatccgact ttttgatttg ttagcgtgtg gtttaacgtt cgtaaactga ctctactttt 2101 taggaatgat ttattgttat cgagattgaa gtgatacgta tcgagtcctt ttcttgttac 2161 accaaagagt gtcacgttcg tgatgttgtc actgagttct tcttttttta catgcccttc 2221 ttggcatagc tttttaagga tacgactggc tgatgctttg gatttcatgc ccaattcata 2281 acggatattt tctaaggtcg agtatcgatg atgcgataaa aatatcatta cggtgtttct 2341 attttttatg gcttgctctg ctcgatatat tggatcggtt attagcattt tacgtcctat 2401 tcttttattt tctgtcggta acatagtacg gcaaattgcc attgccgaga agttaagcga 2461 tttaaagcag atcaaaatca tttagaaccc ttactgcgta aggctccacc agaaaaactt 2521 gtttttcttc ctgccgcgac tcgcaagtga gtctaccccc atcaataagc gacactggta 2581 cggtttttat ctgcctgttc catgcttcaa aatccaacgc actgtatgcc ttgatgaagg 2641 tagactcgtt tcacttgtcg cggcaaaagc attcactaaa aattagcaat tcccctcact 2701 ggttcggcac tttcagtgat tgaatttttt aaacgttcat gaggcactta acctggcgaa 2761 ctagcaatta aatccaacct agttggacgc tgtgcgattg agttcttggt taacgtaaaa 2821 ttgcgtaggc aatttaaagt gagttgcaga tctgcaattt ttgaatgtta ttgcttcctg 2881 atggtgactc aatgcttctt tgttgctatc caatggtgat cttatgcttc tcgatgcttc 2941 ccaatttcaa gataggcacg atggggacgt tttcaccctc tgctacgcat ttgataaaaa 3001 catcccgtgc caaaggtaaa ccctttgaaa cctgacgcac ttcgtttgtc tccagaacgc 3061 ccaaaaaagc cggctacgct tcggactttt tcgagcgcac cggttaattg tttaaaacgg 3121 acgttacagg gggattattg agtgaaccag ttcgagattt tattgccctg taaatcgctc 3181 tgaaagcgtc ataaactttc aaacgtgttt tggggtatat cggtgtggtt tatatctgaa 3241 aagcggcact gtgagcttct gagggggcga aagcatggtt ttcataggct aacttacgga 3301 tttaacataa agggcatatc gcgcatcaca acatttgtgg actaacaaat aaaattgaat 3361 gcagcataat ttattgcctt gccttgctct atctatacaa tacgcacaac ttttatttat 3421 gtgtgtaatg tatgaatttt cggtatgaca ttaatggttt aagagcaatt gcagtgatcg 3481 cagtggttct tttccatttt aaccctgctt gggttcccgg tggtttcgct ggcgtagatg 3541 tgttctttgt gatttcagga tttctgatga caagtattat ctttcgaggg ttagataatg 3601 ataattttaa cttgtttaag ttctacgtag ctcgagccaa tcgaataatt ccagctcttg 3661 ctgttttatg tttggttctt atggtctttg gttggttcta tcttaacccg ttggattaca 3721 aagccctcgg taagcatgtt gctagtagta tgggttttct ttctaatatt atttattgga 3781 gagaatctgg atactttgat gcagcctctc atgagaaatg gctgttacat acatggtcat 3841 tatctgttga atggcagttc tacattatct atccaattgt attagtagca cttaagaaat 3901 ttttatctct tgaaaactta aagcgattaa ttgttattgg gacagtttta ggtttttgtc 3961 taagtgttat cgcaacaatg aagtggccaa acccagcgta ctatcttctt ccaacaagag 4021 cttgggaaat gatgatgggg ggtgtggcgt ttctttatcc ttggaacttg tctgaaagta 4081 aaaagaaaat catagaggtt acaggcctag ctctaatcct aggttcgtat gcttttgttt 4141 ctagtgatgt gtcatggcca ggatatcttg ctttgcttcc agtccttggt gcttatcttg 4201 tgattgttgc aaatcagcag tctagtttta ttactaataa ctatctattc caaaacttag 4261 ggaaatggtc atattcaatt tacttgtggc actggcctgt tgttgttgca gggatctttt 4321 ttgagtataa aagttttgaa ttggcaggtg tttttctatc agttgtttta ggctttttaa 4381 gttttaaatt tattgagagt gctaatttcc catcttttga aaggtggtct gatgcactaa 4441 aagtaaaacc gttgcacttc actcttatgc taggttttat tggctctttg gtgtttgtgt 4501 ttaggcctaa ccaattttta tttccaatga aagagtcggt gcttaactct atagaaagaa 4561 aaccttatga atgtttcgat aaagaaatga tgcatgagaa tgatgatgtt gtttgccaat 4621 taactaaagg tgaatcagct attcttgcga ttggtgattc tcactcatac tcatcacttc 4681 ccgctattga atctattgct aagagcaaca acttagaact ttattacaca gggtttaatg 4741 gctgccctcc tatcatcgga gtatctccaa ttcgaggtga tcagcattta aagaactgta 4801 aaattttgaa tcaaagagca ttagactttg cgttgggtaa gcaagttaaa accgtatttt 4861 tagctgctcg atggacgtac tatacggaag ggacatactc aaaaacgggt gttcaatact 4921 taactattga taataatgaa cgtggcttag atgtatcaaa aagagcacta atgacagggc 4981 ttaaagatac atttaaggct tattttgata atggcataaa tgttgttgta atgcttcagg 5041 ttccaatgca gaagcatgat ccagataaga tttattatcg atcgatatct aatggaaagc 5101 tactaacttc aaagttagct aaaaactcaa tttctttaga agaacatgtt aaatttcaat 5161 ttgaaaccaa tcatttaatt aagtcactag ctgtttccta tccgaatgtg actatttacg 5221 atcctacttc agatatgtgt gtcgaaggac aatgtttggt aggtagtgta gatgtttctt 5281 attattttga tgatgaccac ttgtctattc ttggtgctag aaagttagtt gaaccaatta 5341 gtaagttttt agtcgattaa //