LOCUS NC_011263 6131 bp DNA linear BCT 17-SEP-2008 DEFINITION Borrelia recurrentis A1 plasmid pl6, complete sequence. ACCESSION NC_011263 VERSION NC_011263.1 GI:203288465 DBLINK Project:18233 KEYWORDS . SOURCE Borrelia recurrentis A1 ORGANISM Borrelia recurrentis A1 Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia. REFERENCE 1 (bases 1 to 6131) AUTHORS Lescot,M., Audic,S., Robert,C., Nguyen,T., Blanc,g., Cutler,S.J., Wincker,P., Couloux,A., Claverie,J.-M., Raoult,D. and Drancourt,M. TITLE The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degradated subset of tick-borne Borrelia duttonii JOURNAL PLoS 4 (9), e1000185 (2008) REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6131) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (17-SEP-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6131) AUTHORS Audic,S. TITLE Direct Submission JOURNAL Submitted (17-MAR-2008) Institut de Biologie structurale et Microbiologie (IBSM), CNRS-Information Genomique et structurale, CNRS - UPR2589, Parc Scientifique de Luminy - 163 Avenue de Luminy - Case 934 FR-13288, Marseille cedex 09, France COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001000. DNA/Bacteria source is available for Michel Drancourt, Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Faculte de Medecine, Marseille, France: michel.drancourt@medecine.univ-mrs.fr Plasmid sequence lacks part of the telomeres. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6131 /organism="Borrelia recurrentis A1" /mol_type="genomic DNA" /strain="A1" /db_xref="taxon:412418" /plasmid="pl6" gene complement(166..681) /gene="pf49" /locus_tag="BRE_7001" /db_xref="GeneID:6919773" CDS complement(166..681) /gene="pf49" /locus_tag="BRE_7001" /codon_start=1 /transl_table=11 /product="PF49 plasmid partition protein" /protein_id="YP_002223881.1" /db_xref="GI:203288466" /db_xref="GeneID:6919773" /translation="MKLDILNTIKSRVGSVTQVEDSSDKERAMLRYRQLKEEIRARTL EEAVNKVELSKALYEIKKNKLYKFDGYDNFYEFCLDYKFSRTMIYRYVKIGAYLERES ISEQDIMQSSLNKIINDIRVKRDSSYCKPVVVKFNLKDKEKQLVLIKNKQKLEKFLLK CLLDNWESFIV" gene complement(744..1505) /gene="pf32" /locus_tag="BRE_7002" /db_xref="GeneID:6919770" CDS complement(744..1505) /gene="pf32" /locus_tag="BRE_7002" /codon_start=1 /transl_table=11 /product="PF32 plasmid partition protein" /protein_id="YP_002223882.1" /db_xref="GI:203288467" /db_xref="GeneID:6919770" /translation="MRDIIAISSIKGGVGKSITAIMLGYIFSSKKYRTLLIDIDSQAS VTSYFLPYFENKIDIREYNIYEVLKSKKSFMSIVHKITDDLHFAPSHIKLSQFSGENI IGQEYKLKTILTPYFEEYDYILIDTPPSVNKELINSLMIATKVVIPLPAELWAIESYE ILKSKMQEIINAYQKQDFKNYYVIQTLYEENRKIKKEFFYSLQQLYKEYVPIKIHRSA AIQKMITYRLEPQKDERYYNEYLRVAEVIEGVYNM" gene 2242..2766 /locus_tag="BRE_7003" /db_xref="GeneID:6919771" CDS 2242..2766 /locus_tag="BRE_7003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002223883.1" /db_xref="GI:203288468" /db_xref="GeneID:6919771" /translation="MKNLNFFLYNNSNLKKNQVRLIKLISVLKYLNKNRLGYNQQDIL NLINFFLKKEGYAVIKMKTLQKDLGFMKKHHIIKAFIIRLGEYRGSKIKYIPKKNAYR ILGQVLDATEELLEKTFNIIYKLSKEEKEKNKNELKNSTKNSSVYNTIYNNINNIKKK MKIKQQKQQSNKKT" gene complement(4417..4773) /locus_tag="BRE_7004" /note="pseudogene; uncharacterized conserved protein; fragment" /pseudo /db_xref="GeneID:6919772" ORIGIN 1 ccccaattca atttcatatt cattctctca tttaatgttt tcatttatta ttaaactacc 61 aacatcaact attaactgac tatactgata cccaatataa aattatatat caacttactt 121 tatttaatat attattatat atatagaatt tccattctat atatactaca ctataaacga 181 ttcccaatta tccaacaaac atttaagtaa gaatttttca agtttttgtt tattctttat 241 aagaactaat tgcttctctt tatcttttaa attaaattta acaacaacag gtttgcaata 301 tgaagaatct ctcttaactc ttatgtcatt aataatttta tttaaagaac tttgcataat 361 atcttgctcg cttatgctct ctctttccaa ataggcccct atcttgacat atctatatat 421 catagttcta ctaaatttat aatccaaaca aaactcataa aaattatcat atccatcaaa 481 cttgtataac ttattttttt ttatttcgta taaagcttta gacaattcca ctttattaac 541 agcttcctct aaggttcgag ccctaatctc ctccttaagt tgtctatatc tcaacatagc 601 cctttcttta tcagaactat cttcaacctg agtgacactt cctaccctac ttttaatagt 661 attaagtata tctaatttca tttctgtttc ctaaacataa atatttgtaa actggtttac 721 aaatatttat gttttataaa tatttacata ttatagacac cttcaataac ttcagcaact 781 cttaaatatt cattataata cctttcatct ttctgaggtt ccaatctgta agtaatcatt 841 ttttgaatag cagcacttct atgaatctta attggaacat attctttata aagctgctgt 901 aaactataaa aaaattcttt ttttattttt ctattttctt cataaagagt ctgaataaca 961 taataatttt taaaatcctg tttttgataa gcattaataa tttcctgcat tttacttttc 1021 aaaatttcat aactctcaat tgcccaaagt tctgcgggca aaggaataac aaccttagta 1081 gcaatcatca aagaattaat aagctcttta ttaaccgacg gaggggtatc aatcaatata 1141 taatcatatt cttcaaaata aggtgttaaa atcgttttca atttatattc ttgtccaata 1201 atattttctc ccgaaaattg agaaagttta atatgagatg gcgcaaaatg caaatcatct 1261 gttattttgt gaacaatact cataaaagat tttttagatt ttaatacttc ataaatatta 1321 tattctctta tatcaatttt gttttcaaaa taaggaagga aataagaagt aacgctagcc 1381 tgagagtcaa tatctataag caaggttcta tattttttag aagagaaaat ataacctagc 1441 attattgctg ttatactttt accaacgcca cccttaattg aagatatagc tataatatcc 1501 ctcattattt tatacctcta gagtccaaac acttaaatct tttatcataa aaaagtttat 1561 ctaaattatc ttcagaaact aagagctctt cagacaacga atttacaact ccgatgtcct 1621 ttgccttaat tgcgatatta agttttttaa ttttattttt tattgtaaaa taagaaatat 1681 tattaatatt agccaaaaaa agaggagtat aatatttttt accttcatat tcaataaaaa 1741 aatttttcaa atgcattttc attttttctg tcaaaattta ttaccctctt agaattattt 1801 ttttaattta cttttaataa aattttgggc ctcttcactc aaaagcaatt ctcttttttt 1861 aaaaaataaa tctttagaag aaattatacc ttctatttta ttttttttta tatatcttga 1921 caaataagaa gaatcactat aacccatttc ttttgaaaat tctttcaaat tttttaaaga 1981 atttaaaaaa tttaatgtaa tacgcacaaa tttccatcct cctaaataaa ttttcaccaa 2041 tcatcaaata taccaaataa atacaactta actaatatac tttattatat accatgacca 2101 tcattttgta aacgaaattg acaaaataac cattttagta tataaattat attagagttg 2161 actttgtttt ttaatcaaaa tcagagataa aaaagacctg aaaacaaagg tcttaaacaa 2221 actgaaataa aggataaatc gatgaaaaat ttaaatttct ttttatataa taacagcaac 2281 ctcaagaaaa atcaagttag actaattaag ctaatttctg tactaaaata tttaaataaa 2341 aacagattgg gctataacca acaagacata cttaatttaa ttaacttttt cctaaaaaaa 2401 gaaggttatg ctgtaatcaa aatgaaaaca ctacaaaagg acttgggctt tatgaaaaag 2461 catcatataa tcaaagcatt tattatacga cttggagaat atcgagggtc aaaaataaaa 2521 tatataccta aaaaaaatgc atatcgaata ttaggacaag tacttgatgc aacagaagaa 2581 ttattagaaa aaacatttaa cattatatat aaattaagca aagaagaaaa agaaaaaaac 2641 aaaaacgaat taaaaaatag cacaaaaaat agtagtgtat ataatactat atataataat 2701 ataaataata ttaagaaaaa gatgaaaata aaacaacaaa aacaacaatc taacaagaaa 2761 acgtaaaaaa aatagcaaaa aaacgataaa aaaatgaaaa aaataaataa aaaaagtggc 2821 aaaccaagaa aaccatatca aaaaaagaga attttttgag aaaaaagaaa ttagaacgca 2881 aacaaaaggc acacaacagt aattttatta caaacagcaa gcatttttaa aattgattaa 2941 aataaaaaat tttaaaaaaa ttttacgaaa aaatttaagt ttaaagatcg taattacttt 3001 aggaaagaat agtaaccaaa cgcccggcca gaagtcttta ttttgctcca caataaaaga 3061 aatttttaaa aactttataa taacatcccc atacaactat gcccttaaat tgcaaaataa 3121 agggtataaa tattttatga ttatgggaaa tgataaacgt attgtgtaaa caaaggaagc 3181 tatttcttag gttcataact aaacataaaa aatagcatta tgttcaacaa gattttttaa 3241 atattttata gggagaatgt ttctaatcga agttgcttca gggaaaagct tatacacaaa 3301 ggaaagaact tatctcctat caatccaaac tcaactatcc aaactaccga ataaatagca 3361 ttatacagca atgcaaactt ttttccagta ttaatttttc agagaatcaa acctaaacta 3421 atgagcttta aggcttagga attaatgcaa atgaggacat gtatgaaata taaaaaatta 3481 acgaaataac atattgcaaa ccataaaaca aaaatataaa aaagaaaacc ccttggggaa 3541 ggggattatt taaaagaatg tatggtatga agtaaatatt gataataaat tcttttaatt 3601 ttaaaaaagg agaatattta ataactaatt attagttcaa aaaaacaatc atttcaattt 3661 ttttttgcaa tatttctaat attttttcat tctatgttaa tgattctatg ttaatgattt 3721 tgaagatttt gaattttatt gttatcaaat acaatttgat aacaataaaa caagagatat 3781 aacaagggaa tatcttaaaa agattaagat atatttatct catagtaata gagaaaagaa 3841 agtccctact cctatgtctt gttttggaga ggattgatag gagtgttggg gactgttgat 3901 agaatgcttt ctaccgtatt tatatctgtt tataacatta ttttattttt ttaattttgt 3961 aaatattttt aaataatttt attatataaa aacaagactt caaatttctg taatgtgacc 4021 taaaaaataa agcaaaaaag tataaaggag ttatcaattg ttaatattaa agaattgtaa 4081 ggaaaataat taacaattat gtatttatag taaataaagt tataattatt tttttatatt 4141 aaatgaatga tcgaaatttt ttattgctct caagagtttt atgtatccca attggatagg 4201 gggaattttt cttttctgat ttttaaagtg taattttcgg tttatttttt tattcaattc 4261 ttgcatttct tgaatttcta agatgcttgg ttcataatcg atccattttt tatcaatcca 4321 tcctttttcc cattcataat aactttcgtt atagctagtg ccattagatt catcaaaatg 4381 tcttgacaga gcagatatta tcttagcact gtactaaagc attttgtctg tttctgtact 4441 agatataaat tcatcataat cgtaagtttt acctgtctgc atattaacaa tatcaacaat 4501 caacttaaag gtatttatgc aattaagagc gatattacca aaaggaagat ccggattact 4561 tagacatgta atattaacct tatatttatt tttcaaactt ttaggtattt taaagaagtc 4621 aacaataaat ccattgactt tggatttata atttgcctca tattgagaat tttcaaaaaa 4681 gatttcttga agaccttttg ttatatgttt atcatgattt aacatcatag gtagcttact 4741 tttttgaaca ttattttgtt taatattttc catctcatat cctcagaaat caaaaattct 4801 ttcttttatc ttgatatcat acattattat aatacatatt aaataagaat gaatataaat 4861 agctaatatt ttctaatatt tttggtaaat ttttaataaa aaaattaagt atttatttta 4921 tggcaccatt atctttccag ttgacattgt ttttttacta atttgtgata aatttaattt 4981 atctttaacc tttaaccatt tataagaagc tttgagcgag caattctctc aaggcttctt 5041 attgctatta ttatttccta ttacccttat ttattaaata ataaaaattc gttgactcat 5101 tgtaagttag ccttttactt tgatatatcc aaaattatat ttttagtaaa aatctagata 5161 tagaacttta gaggcataaa gtttattttt taatcaaaaa taataaataa ttatttaata 5221 ataaataaac ttttatctta tatattctta acatattatt taataaataa gggtaatagg 5281 aaatcctcct cgccgtccgc cgccgtgcgc gccttgcccg ctccccgctc cttactcctg 5341 gttcccggct cccgcctccc ttccctcctc cccccttccg tccccccccc tgtcccctgc 5401 gccgttcccg gcgccctcnc ntctctcctt ngtttttttg ttggcccttt gccgggcgtg 5461 ttcgcccccc tccgctcttt ctccccctcc ttatttacca tcgcttctaa tccctgcctg 5521 cctccccccg aacaaccgcc cgactcttct cgattcccgc gaggcctctc gacgacggca 5581 aaactatgta accccaaaca ctcccggttt caaaaaaacc gtcaccgccc ccccctacgg 5641 cacgccctac acctccatgg cctccaaacc ctcctcacac ccaaaccggg tccctctgcc 5701 gcggcacccc ctcccttctc ttcccggcgc cgcccctccc ctccaccctc ctccggcggc 5761 gccccccgct tttcatccgc acgacccccc ccccgggccc cccacggggg cgcccgccat 5821 gtgggctgcg gccccttccc cctcccccca gctccccccc ccaacaccgg ctgtccgccc 5881 ccaccccccc ctcccccccc ggggccccac ccctccccac cctgcgccct cccggctccc 5941 cccccggggc accccccccc ccctctgcgc gccacacccc cgcccccccc aacttcgccc 6001 ccaaaccccc ccgcctccag gccgggcctc ggccggcccc cccggctcaa tcacggccgg 6061 acggggctac cccccctccc cggcttcgcg ccgcgcccct ccccccccgg ccccgcgccc 6121 cggcccgggt c //