LOCUS NC_011093 4585 bp DNA circular BCT 31-JUL-2008 DEFINITION Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 plasmid pCVM19633_4, complete sequence. ACCESSION NC_011093 VERSION NC_011093.1 GI:194733896 DBLINK Project:19459 KEYWORDS . SOURCE Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ORGANISM Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4585) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (31-JUL-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 4585) AUTHORS Ravel,J., Fricke,W.F., White,D., McDermott,P., Mammel,M., Rosovitz,M., Leclerc,J., Cebula,T. and Sebastian,Y. TITLE Direct Submission JOURNAL Submitted (24-JUL-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001126. The sequenced strain has been deposited at the Salmonella Genetic Stock Center at the University of Calgary under the care of Dr. K.E. Sanderson. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4585 /organism="Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633" /mol_type="genomic DNA" /strain="CVM19633" /serovar="Schwarzengrund" /sub_species="enterica" /db_xref="taxon:439843" /plasmid="pCVM19633_4" gene complement(160..1095) /locus_tag="SeSA_C0001" /db_xref="GeneID:6515240" CDS complement(160..1095) /locus_tag="SeSA_C0001" /note="identified by match to protein family HMM PF03090; match to protein family HMM PF08708" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="YP_002113005.1" /db_xref="GI:194733901" /db_xref="GeneID:6515240" /translation="MSAALQYFEENLPRRPYHTDDLAFGLRISGKGRALLARYIQQNQ PHAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASV KALKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLS ASARHSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPV PLSPPECRAIGKSIAKYTHRNFTPETFAQYVANTHTPEIQAKRGRKGGIAKGEAYADK RFMALCMLENGYSQKAIAAMLEVSTRTIRNWKSGK" gene 1596..1931 /locus_tag="SeSA_C0002" /db_xref="GeneID:6515239" CDS 1596..1931 /locus_tag="SeSA_C0002" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002113006.1" /db_xref="GI:194733898" /db_xref="GeneID:6515239" /translation="MKRIVFSILLPLSFHANAYYLSCEQVGKIAVAVTTSSNEKATQN DTKYGDIQKNNLSKIENHAVLFCQEVRKFKVTPETADSWAEYTSLKAELDSEMKNNIK IITRLSVIQ" gene complement(1983..2306) /locus_tag="SeSA_C0003" /db_xref="GeneID:6515241" CDS complement(1983..2306) /locus_tag="SeSA_C0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002113007.1" /db_xref="GI:194733900" /db_xref="GeneID:6515241" /translation="MTIIFNSDKQTDSESAFEKWLLHHPDGFVVNLRKAANGLSGKSD KHKTFIHSASCHCLSSTKGGFTNGEYQKICSSSFEKAEALAKYMTGLDEIKRCSFCFG KDKEC" gene complement(2398..3933) /locus_tag="SeSA_C0004" /db_xref="GeneID:6515238" CDS complement(2398..3933) /locus_tag="SeSA_C0004" /note="identified by match to protein family HMM PF03389" /codon_start=1 /transl_table=11 /product="43 kDa relaxation protein" /protein_id="YP_002113008.1" /db_xref="GI:194733899" /db_xref="GeneID:6515238" /translation="MASYHCTVKTGAKGAALKHADYISRSGEYKSYKSREDLEFSSSG NMPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGN RHAYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKK ASIPQTAGERKAALVALRSRWADVQNEHLARHGHESRVDHRSLKEQGIKRTPEVHLGP VHAANLNEGQIAAIQEHRAARQQERAARNPAPERQQELEQKQKIRTVERSPELLAQYR KVMKTVIQGEERLARLGDANPDALKEHKLLQNAKAKKESLSEWSRRIYEGARYLDKLG RNVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRN KLQQAESEWDKENAAFKRTEGYKYVGDLDRYREREILAAASLENTRQKVAEEVSVARS QMLSLEPELSMSGDEKAQMRHELLAEMAQERQQQEEYARRIQQSLARGMLNSKERDQG IER" gene 4018..4551 /locus_tag="SeSA_C0005" /db_xref="GeneID:6515237" CDS 4018..4551 /locus_tag="SeSA_C0005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002113009.1" /db_xref="GI:194733897" /db_xref="GeneID:6515237" /translation="MILRSHTQADKVILCTITTHINGKSAEVRMTNREDWLSAKIAYI NGLKSPSEQQRLLVLLAEKKNRTTTDEKTLSALIRAEKTAEKAAAAKARVTAIIAAER KAAARAERKARDHELYKAAGLMIVAGLVDSKTGKPKFSAAELVGALAGIAELPRNHPK WQEWEKRGKELLTKDSA" ORIGIN 1 cctcgctcat tcgctcgcta cgctcggtca tgagactgtg gcgagcacga ccacctcaat 61 catacggcaa gccgcaccat tgctgggctg aaaggagaaa accgccggaa agcccgctgc 121 tcaaaaagac gccgaaaagg cgctgttatc tgatataggc tattttccgc ttttccaatt 181 ccgaatagtt cgagtggaaa cctccaacat cgccgcgata gctttctgag aatatccatt 241 ctccagcata catagagcca tgaaacgctt gtcagcgtag gcttcgcctt tagcgatgcc 301 acctttcctg cctctcttgg cctgtatttc tggcgtgtgc gtattagcca catactgtgc 361 gaaagtttcc ggcgtgaagt tcctgtgcgt gtatttcgca atgctcttgc caatagcccg 421 acattcaggc ggagaaagcg gaacgggaag cgatgcgttg tacatttcga cacgctgaat 481 cacggcatca agccactgtg agaatgctgg ccagccctga cgaatcgccc tgtaagccca 541 tttgcgcgtc atttcgaaca ggtggcagtt tcgccccatc ccgtaatgtt tatcgatgct 601 atgacgcgct gaggcgctca aatcgagata atcagccagt tcatcgaggg tataggcttc 661 ctcgcgccac tccatcacct gccattccag gtggaacgga tttttgcaaa tcagtccgct 721 gtagttcaca tcagcacaaa gtttctcaca cagcgaacgt tcaaccgctg cggcatattt 781 cagcgcctta accgacgcat caggcgcggt tctcacggcg atattgagtg catagagcag 841 gtgagcgtgt ccgttcacag gatttttaac ggtgatgttc ggcgcggggg cgttccggtc 901 gctccagtca atcgctgccc cctcgcggtc aacgtcaaaa accagccaga actgcgcatg 961 aggctggttc tgctggatgt accgcgcaag cagcgcacgc cctttgccgg agatgcgaag 1021 accaaaagcg agatcatccg tgtgataggg acggcggggt aaattttctt cgaagtattg 1081 aagcgcggcg ctcatgtgtt acgattcctt ccaggttatc gaccgacatc gcccctgtat 1141 tttcgtgaca gtcttggcgg atagacacga atttcagggg cgtttgtttt tcagtcgctt 1201 acactacccc caacgacaaa acctgtcgag tcttcccgca aacccgatcc atttaccata 1261 actcctgttg tatgcacccc ttaaaacgcc ctcagacgct ttctgacgca aaaaactcaa 1321 aaagacaagt aaacaccagg cagaaccaga aaaacgcgtc agaattgttt ctaggaagct 1381 gcataactat gcacaaaagc gattcgcgaa cagtttcgac cgtttagaag ggcgaacggg 1441 tcaaaacggc aaactttccc catcagaaaa cgcctcacag ggagcgaaat cttttcgctc 1501 cctgtgaggc gttagaaaaa tgctaagaat tgcaaaatac gtatttgtaa atgtagtatc 1561 tacatgtttt ttttattaaa aacgagacac ctataatgaa aagaatagta ttctcaatat 1621 tattgccatt gtcatttcat gccaacgcgt actatttaag ttgcgagcaa gttggaaaaa 1681 tagcagtagc ggtaaccacc tcatcaaatg aaaaggcaac tcaaaatgac acaaaatatg 1741 gagatattca aaaaaacaat ttatcaaaaa tagaaaatca tgctgtttta ttttgccaag 1801 aagttagaaa atttaaagtc actccagaaa ctgccgatag ctgggcagaa tatacatccc 1861 ttaaagctga attagattca gaaatgaaaa acaacataaa aattataaca cgactatctg 1921 taatccaata aataaaaaga tcgcgataaa aatcgcgatc ttgccaataa taaagtagca 1981 tattagcact ctttatcttt accaaagcag aagctgcaac gttttatctc atctagccca 2041 gtcatatatt tagctaacgc ctctgctttc tcaaaagaag atgagcatat tttctgatat 2101 tctccattag taaatccacc tttcgtagaa gagagacaat gacaactagc actgtgaata 2161 aaagttttat gtttatcact tttacccgac aaaccattag cagcttttct caaattaaca 2221 acaaagccat caggatggtg aagcaaccat ttctcgaaag ctgactcgct atcagtttgt 2281 ttatcgctgt taaagataat agtcatttaa tttatcttcc atcacaatca atttcatcta 2341 ctcgttaact atttttagtt aattcagaaa aatttcttta ccagagtaaa tacaacatta 2401 tcgttcaata ccctgatcac gctccttact atttaacatt cctctagcca aagattgctg 2461 tatacgccgt gcgtattctt cttgttgctg cctttcctgt gccatttctg ccagtaactc 2521 atgtcgcatt tgagcttttt catctccaga catactgagt tcaggctcca gagataacat 2581 ctggctacgg gcaacggata cttcttcagc aaccttttgc ctggtattct ctaaagatgc 2641 cgcggccaga atctcacgtt ctctgtacct gtccagatcc ccaacgtact tatatccctc 2701 ggtacgctta aaagcggcgt tttctttgtc ccactcggat tcggcttgct gtagcttgtt 2761 cctgaattca ttcctttcat gttcagcggt ttccagcaca cttttttgct ccagaatacg 2821 cgcatcaatc tcccttttgt cagccccccg aaacaggcca cgaatcccat tcaaagcatt 2881 gcgttgttcc tgtagctccc gcagctccct ttgtgcggaa acaacattac gccccagttt 2941 gtctaaatac cgtgcccctt catatattcg cctgctccat tcggaaagag attctttttt 3001 agctttcgca ttctgaagca gcttatgttc tttgagcgca tcggggttgg catcccctaa 3061 acgagcaagc ctttcctctc cctgaatgac cgttttcata accttgcggt actgagccag 3121 taactccggt gaacgctcaa ctgtcctgat tttttgcttt tgctccagtt cctgttggcg 3181 ctctggcgct gggttgcgtg ctgcgcgttc ttgctgacgc gccgccctgt gctcctgaat 3241 tgccgcgatc tgcccctcgt tcagattggc ggcgtgaaca gggccaagat gaacttccgg 3301 cgtgcgcttg atgccctgtt ctttcagcga acgatgatct acgcgcgact cgtgaccgtg 3361 tcgcgcaagg tgctcattct gcacatcagc ccagcgggaa cgtagcgcaa caagggcggc 3421 ttttcgctct ccggcggtct ggggaatact cgcctttttt gcgcctcccc gctccggtga 3481 tttgctgttg gcgcgtttaa aaaattgctg cggatcgcgt tcaataccat cattaatccg 3541 ctcgcaaaac atgatatgcg cgtgtggctg ttcctttccg tcgattgcac ctggcggatt 3601 gtggatcgcg tactggtagg catggcgatt gccaagttcc ttttgcacga aatcttcaac 3661 aagttctatc cgttgttcgc gtgtcagttc acgcggtaat gcgatctcaa tttcacggta 3721 tgccgtcccg ttttttcgtt caaattcatc tgcggctttc cacagttctg cgggattttt 3781 cttcgcccat gatggcatgt taccggatga cgaaaactcc agatcctccc gcgatttgta 3841 gctcttatat tcgccggatc tggaaatgta atcagcatgt tttaaggctg cgccttttgc 3901 tccggtttta acggtgcaat ggtagcttgc catctgcctt ttagccctcc gcaggagcgc 3961 acagtttctt gatgaaatcg agaaactact aagtgcgcat ccctgaataa atcagggatg 4021 attttacgtt ctcacacgca ggcagacaag gtgatattat gcacaataac aactcacatt 4081 aacggcaaaa gtgcagaggt aaggatgaca aatcgtgaag actggttaag tgcaaaaatt 4141 gcctacatca acggactgaa atcaccgtca gagcagcaga gattacttgt gttactggca 4201 gagaaaaaaa accgaacaac gacggatgaa aaaacgttgt ccgcactgat acgagcagaa 4261 aaaaccgcag agaaagcagc cgcagcaaaa gccagagtaa cggcaatcat agcggcagaa 4321 cggaaggcag ccgcaagggc ggaacgaaag gcacgagatc atgaactcta caaggccgca 4381 ggcctcatga ttgtggcagg actggtggac agcaaaaccg gaaaaccaaa gtttagtgct 4441 gccgaactgg taggcgcact cgcaggaatc gcagagctac cgcgcaacca tccaaaatgg 4501 caggaatggg aaaaacgcgg gaaagagcta ctcaccaaag acagtgcgta agagcctccg 4561 ttcacgttcc ggttccctgg tgctt //