LOCUS NC_011079 3605 bp DNA circular BCT 23-SEP-2008 DEFINITION Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid pSL254_3, complete sequence. ACCESSION NC_011079 VERSION NC_011079.1 GI:194442198 DBLINK Project:18747 KEYWORDS . SOURCE Salmonella enterica subsp. enterica serovar Newport str. SL254 ORGANISM Salmonella enterica subsp. enterica serovar Newport str. SL254 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Newport. REFERENCE 1 (bases 1 to 3605) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (25-JUL-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 3605) AUTHORS Ravel,J., Fricke,W.F., White,D., McDermott,P., Mammel,M., Rosovitz,M., Leclerc,J., Cebula,T. and Sebastian,Y. TITLE Direct Submission JOURNAL Submitted (08-JUL-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001112. The sequenced strain has been deposited at the Salmonella Genetic Stock Centre at the University of Calgary under the care of Dr. K.E. Sanderson. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3605 /organism="Salmonella enterica subsp. enterica serovar Newport str. SL254" /mol_type="genomic DNA" /strain="SL254" /serovar="Newport" /sub_species="enterica" /db_xref="taxon:423368" /plasmid="pSL254_3" gene complement(237..614) /locus_tag="SNSL254_B0001" /db_xref="GeneID:6482140" CDS complement(237..614) /locus_tag="SNSL254_B0001" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002039226.1" /db_xref="GI:194442200" /db_xref="GeneID:6482140" /translation="MSTKKYRLYNYLILLNHKDSIVTFFYRTISYSIYHNIRCVHRLR GSQGVSDGKPVKQGNKPPENQPETRRLCFYGMHEYARKCIAQNFTPCSQWKSCFRRSS HPKTVNGDAIYCVTVKRWQEHQA" gene 744..2276 /locus_tag="SNSL254_B0002" /db_xref="GeneID:6482144" CDS 744..2276 /locus_tag="SNSL254_B0002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002039227.1" /db_xref="GI:194442199" /db_xref="GeneID:6482144" /translation="MKKSVVRQVLEMSGPCISSDLAERIQWQYPSMSPEAIRKMISRS TDIGKLPFLKFSHNRRFIYLKDDFGSFKFWRALEKCMYEANSTYSHAILSVINNGGYL KVKDFGIVSGSPIKQAKHLSYETVLRNLLSAKILRAVYIDGVGDCVLINNNIANDVNI RTMANCESFFDKPIFELVKAWLRNLGLVAFNQIKTKYDGEGNPVVGSFEWDMTAPSYV SPLAEYVGGKLMPGFVACDFSLGFNRDEITTAAAETFIRKVQMTKSSRASQRIMFVIF ARRFGKIAFNKLRSEGVLAVTIANAFGNKVDESLTRLSRVVQGSLSIEKHPDELLQMV KDLESVSGENGNLRGYVFELFVSSQISNFYGLGNIYINREYKINGKHAEADVVLESSD DIYIIECKNVKVLPSTELTRWMKERVPIINSYYKINNLEKKNIHHYLWVTGNVYNKDL KRLDSFKNNNKNIDVDYLFGEHLDDFFYKKKRVFNLYRKVISPDYKKGVMPDFELEDD FF" gene complement(2330..2431) /locus_tag="SNSL254_B0003" /db_xref="GeneID:6482143" ncRNA complement(2330..2431) /locus_tag="SNSL254_B0003" /ncRNA_class="antisense_RNA" /product="RNAI" /db_xref="GeneID:6482143" gene complement(2465..2905) /locus_tag="SNSL254_B0004" /note="conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error" /pseudo /db_xref="GeneID:6482142" gene 3182..3331 /locus_tag="SNSL254_B0005" /db_xref="GeneID:6482141" CDS 3182..3331 /locus_tag="SNSL254_B0005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_002039228.1" /db_xref="GI:194442201" /db_xref="GeneID:6482141" /translation="MPSEYDEQRDATDTQLPGEYDLFDLMAKVTEENLHAPVDFGPPV GREAL" ORIGIN 1 ttgtatgaac agcttattcc tcctgactac taataaacta cagcgtcact actgatttac 61 tactgattta ctacaaaccg gagggggggg actacagaaa cactactgat ttactactga 121 tttactacaa atcggaggag gatgactact tatctactac tgatttacta ctgaattact 181 actgaattac gtcataacag ttctctgaac cattcgtaca tccgaccccc ttctcttcat 241 gcttgatgct cttgccaacg ctttacggtc acgcaataaa ttgcgtcccc gttcaccgtt 301 ttcggatgag aagaacgtcg aaaacaggac ttccactggc tgcacggcgt gaaattctgc 361 gctatgcact tgcgcgcata ctcatgcatg ccgtaaaaac agagcctgcg cgtttctggc 421 tggttttcgg gtggtttgtt gccttgtttt accggtttcc cgtcagaaac gccctgagag 481 cctctcaggc ggtgcacgca acggatgtta tggtaaatgg agtagctgat agttcgataa 541 aaaaatgtca caatactatc tttatgattt aaaaggatta aataattata aagacgatat 601 ttctttgtgc tcaatttaaa gtaagtaatt aaccatctga tttttaatta ttttttatag 661 tcactttttt ttaaaagact gcgccctatt acacgtagtg taatattata aatagcgtag 721 tgtgacagaa ataaggtgag gatatgaaaa aaagtgttgt tagacaggtg cttgaaatga 781 gcgggccatg catctcttcg gatcttgcag agagaattca gtggcaatat ccctcaatgt 841 cccctgaagc gatacgtaaa atgatctcgc gaagcacgga cataggtaag ctgccatttt 901 tgaaattcag ccataacagg agattcattt atctaaaaga tgattttggc agtttcaaat 961 tttggcgagc tctcgaaaag tgcatgtacg aagcaaactc aacttactca cacgcgatac 1021 tttccgtaat aaataatggc ggttatttga aggtgaaaga ttttgggatt gtgtctggat 1081 ctcctataaa acaagctaaa catttaagtt atgaaacagt tctaagaaat ctactttcgg 1141 caaaaatact tagagccgtg tatattgatg gagttggtga ttgcgtactg ataaataaca 1201 acatagccaa cgatgttaat attagaacaa tggcaaattg cgaatccttt tttgacaaac 1261 caatatttga gcttgttaaa gcttggttga ggaatttagg cctagtcgct tttaatcaga 1321 taaaaacaaa atatgatggg gagggaaatc cagttgtagg ctcttttgaa tgggatatga 1381 ccgctccaag ttacgtttcc cctctcgctg aatatgtcgg cggaaaactg atgcctggtt 1441 tcgttgcctg tgatttttct ctcggcttta atcgtgatga aattactacc gctgcagcag 1501 aaacattcat aagaaaagtc cagatgacca agtcttctcg agcgagtcag aggataatgt 1561 ttgttatttt cgcaaggcgt ttcggcaaaa tagccttcaa taagttgaga agtgaggggg 1621 ttctggctgt aactatagca aatgcgtttg gtaataaagt tgatgaaagc ttaaccaggt 1681 tgtcgagggt ggttcagggt tctttgtcca ttgaaaagca tccagatgag ttgcttcaga 1741 tggttaaaga tctggagtct gtttctggag agaatggcaa tttgagaggg tatgtttttg 1801 agctttttgt atcctcgcaa atttctaatt tttatggcct tggtaatatt tacattaata 1861 gagagtataa gataaatggt aagcatgcag aagctgatgt tgtattggag agtagtgacg 1921 atatttatat aatagagtgc aaaaatgtta aggtcttacc ttcaactgaa cttacgcgtt 1981 ggatgaaaga aagggttcca attataaact cttactataa aataaataat ttagaaaaaa 2041 agaatatcca ccattatttg tgggttacag ggaatgtgta caacaaagat ttaaaaaggt 2101 tagactcttt taagaataat aataagaata tcgatgttga ttatttgttt ggtgagcatt 2161 tggatgattt cttttacaag aaaaagcggg tgttcaactt atatagaaaa gtcatttcac 2221 ctgattataa aaaaggcgta atgcctgatt ttgagttaga ggacgatttt ttctagctac 2281 tgcgtttctt gacgatggcg ctttgaaagg cgtatcttcc atctctgaaa cgaaaaaacc 2341 acccggcaag gtggtttttc gaaggttcag gaaaccggca agtttctgaa ccgtggtaac 2401 tggcttaaac ggagcgcagt gaccaaatct gtccttccag tgtagccgta gtcaggtcaa 2461 cacttcaaga actctgtgta tgcttgtaca cgcctctccg ctccgtaaac cagataccaa 2521 tggctgctgc cagtggcgtt ttgtcgtgtc tttccgggtt ggactcaagt cgatagttac 2581 cggaacaggc gcagcagtcg gactgaacgg ggggttcgtg catacagtcc agcttggagc 2641 gaactgcctt cccggaactg agtgtcaggc gtggaatgag ataaacgcgg ccataacagc 2701 ggagtgacac cggtaaaccg aaaggcagga acaggagagc gcacgaggga gctaccaggg 2761 ggaaacgcct gggatcttta tagtcctgtc gggtttcgcc accactgatt tgagtgtcag 2821 atttcgtgat gcttgtcagg ggggcggagc ctatggaaaa acggcagcgc cgcgtccttt 2881 tcctgccctg tttgtcatgc cacatgcttt tgctcttatc cgtgtgcagc taacgcccgc 2941 cgcagccgaa cggcaggagc ggtagcgacc gagtgagcga ggaggcgtca tatcacagta 3001 acccccattt tctcccgtac gccctgtagc tgcattttcc cctgtcacat gaagcacttt 3061 cctgaacccc gaccccgccg taacatattc agctagttta gactccgcta gcgctacgtg 3121 actggttcag ggctgcgctc cgaaacccgc taacaacccc ttagctactg gatatcaccc 3181 catgccatct gaatatgatg aacaacggga tgcgactgat acgcagcttc ccggcgaata 3241 tgaccttttt gatttaatgg cgaaggttac tgaagagaac ctgcacgccc cggtggattt 3301 tgggccgcct gtcggccggg aagcgttata gctttttcgc ttacccgcgt acgtgtaata 3361 cgccggtatt acatcttatt tctttatttt catgtgatta caggtggttg taatacgttg 3421 cgtattacat aaataaacgg gaacttcagt ttttaccttt taattcatgc aattgcgatg 3481 aaaatcgcgg ttgcgtatgg tgtatggcca tttaagggat aaagaatcat ctccttaccg 3541 ggctgagctt tgcctattct gaggagatct gtgaaaaaaa gcgtccataa ctagctcgtt 3601 catac //