LOCUS NC_010672 7437 bp DNA linear BCT 25-JUL-2008 DEFINITION Shigella boydii CDC 3083-94 plasmid pBS512_7, complete sequence. ACCESSION NC_010672 VERSION NC_010672.1 GI:187918703 DBLINK Project:15637 KEYWORDS . SOURCE Shigella boydii CDC 3083-94 ORGANISM Shigella boydii CDC 3083-94 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella. REFERENCE 1 (bases 1 to 7437) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-MAY-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 7437) AUTHORS Rasko,D.A., Rosovitz,M., Maurelli,A.T., Myers,G., Seshadri,R., Cer,R., Jiang,L., Ravel,J. and Sebastian,Y. TITLE Direct Submission JOURNAL Submitted (01-MAY-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001061. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7437 /organism="Shigella boydii CDC 3083-94" /mol_type="genomic DNA" /strain="BS512; CDC 3083-94" /db_xref="taxon:344609" /plasmid="pBS512_7" gene 82..405 /locus_tag="SbBS512_C0003" /db_xref="GeneID:6277287" CDS 82..405 /locus_tag="SbBS512_C0003" /note="identified by similarity to SP:P13657; match to protein family HMM PF05713" /codon_start=1 /transl_table=11 /product="mobilization protein MobC" /protein_id="YP_001883437.1" /db_xref="GI:187918708" /db_xref="GeneID:6277287" /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGRLPT LAPPLLRQLAAIGNNLNQAARKVNSGQWSSGNRVQVVAALMAIGDELRRLRLAVREQG TRDDS" gene 395..1765 /locus_tag="SbBS512_C0004" /note="mobilization protein MobA; this gene contains a premature stop which may be the result of sequencing error; identified by similarity to SP:P13658; match to protein family HMM PF03432" /pseudo /db_xref="GeneID:6277293" gene 1620..1853 /locus_tag="SbBS512_C0005" /db_xref="GeneID:6277290" CDS 1620..1853 /locus_tag="SbBS512_C0005" /note="identified by match to protein family HMM PF04899" /codon_start=1 /transl_table=11 /product="mobilization protein MobD" /protein_id="YP_001883438.1" /db_xref="GI:187918710" /db_xref="GeneID:6277290" /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQRDN AMLNERVMQLSQQVQHLSEQTERLSQLYSENRR" gene complement(1972..2088) /locus_tag="SbBS512_C0006" /db_xref="GeneID:6277283" CDS complement(1972..2088) /locus_tag="SbBS512_C0006" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001883439.1" /db_xref="GI:187918705" /db_xref="GeneID:6277283" /translation="MRFNAFLCFQQGLTEARSRCPRTNHYPKKCTGNALTTF" gene complement(2049..2270) /locus_tag="SbBS512_C0007" /db_xref="GeneID:6277289" CDS complement(2049..2270) /locus_tag="SbBS512_C0007" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001883440.1" /db_xref="GI:187918704" /db_xref="GeneID:6277289" /translation="MQPCESRRNCQPETAETDFFHAFGSEEDGDLSGKTEVQGNERDL AIEAKHSNKRHTRIAPVCVLTRSCVFSKV" gene complement(2292..2435) /locus_tag="SbBS512_C0008" /db_xref="GeneID:6277288" CDS complement(2292..2435) /locus_tag="SbBS512_C0008" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001883441.1" /db_xref="GI:187918706" /db_xref="GeneID:6277288" /translation="MAMREDSKWIYHNLLLYAPLKRVRRDHGSRQVKMATNHPKNCRD RTR" gene complement(2413..2832) /locus_tag="SbBS512_C0009" /db_xref="GeneID:6277291" CDS complement(2413..2832) /locus_tag="SbBS512_C0009" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="YP_001883442.1" /db_xref="GI:187918709" /db_xref="GeneID:6277291" /translation="MRRTGNKLCLIAMITATVALTACAPKGSVEQHTRHYVYASDDGF DPNFSTQKADTTRMMVPFFRQFWDMGAKDKATGKSRSDVQQRIQQFHNQEFLKSLRGK TQFAGTDYRSKDLTPKKSRLLAETISAVYLDGYEGRQ" gene complement(2913..3350) /locus_tag="SbBS512_C0010" /db_xref="GeneID:6277294" CDS complement(2913..3350) /locus_tag="SbBS512_C0010" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001883443.1" /db_xref="GI:187918707" /db_xref="GeneID:6277294" /translation="MGHCHFMAWHTLRDALKMTGRSRSQFYRDMRAGLVSYRTSKDGR REFETSELIRAYGELKQNETPERHNTGQEENPHNQQTERILQELNELKQCLTLMLEDK QARDTERQRQEAEREQLQNEIAQLRQELEQEKKRGFWSRLFGH" gene 3609..5468 /locus_tag="SbBS512_C0012" /note="colicin U; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01024" /pseudo /db_xref="GeneID:6277292" gene complement(5496..6020) /locus_tag="SbBS512_C0013" /db_xref="GeneID:6277295" CDS complement(5496..6020) /locus_tag="SbBS512_C0013" /note="identified by match to protein family HMM PF03857" /codon_start=1 /transl_table=11 /product="colicin immunity protein" /protein_id="YP_001883444.1" /db_xref="GI:187918711" /db_xref="GeneID:6277295" /translation="MQKEHNDNKQLNNMLSWIAFAGTIPFFIILIIYKLNPNLYLTNI IPDSIINIPSVISSYNPIMTKLMDIYGKSAPLLAIITFILQFRHRKLEKGINREKLIT ACILTPFIYVFYAYFFLWNNFELTTSGRTVRWMSENDFTLLFFFICMYYCSFFMTYIL CYVPVAVYKIWKER" gene complement(6313..6416) /locus_tag="SbBS512_C0015" /db_xref="GeneID:6277284" ncRNA complement(6313..6416) /locus_tag="SbBS512_C0015" /ncRNA_class="antisense_RNA" /product="RNAI" /db_xref="GeneID:6277284" gene complement(6512..6883) /locus_tag="SbBS512_C0014" /db_xref="GeneID:6277286" CDS complement(6512..6883) /locus_tag="SbBS512_C0014" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001883445.1" /db_xref="GI:187918712" /db_xref="GeneID:6277286" /translation="MGKRPGTGKRPRRWRFSIGSAPLTSITKTDAQVRGGETRQDYKD TRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCT NPPFSPTAAPYPVTIVLSPTR" gene complement(7031..7360) /locus_tag="SbBS512_C0002" /db_xref="GeneID:6277285" CDS complement(7031..7360) /locus_tag="SbBS512_C0002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001883446.1" /db_xref="GI:187918713" /db_xref="GeneID:6277285" /translation="MNRQTSVNRFTTTPMSFTAVASLASGMTVKTSDACSSRRRSKLI CERMPGADKPVRARQRVLAGVSGCRGAAMTQSRRDSGVYTGLTMRHQCGLYEKCAIPG VKCRTDA" ORIGIN 1 ttttcctgtt tggtcactga tgcctccgtg taagggggat ttctgttcat gggggtaatg 61 ataccgatga aacgcgagag gatgctcacg atacgggtta ctgatgatga acatgcccgg 121 ttactggaac gctgtgaggg taaacagctg gcggtatgga tgcggcgggt ctgcctgggt 181 gagccggttg cccgttccgg gaggctgccg acactggcac cgccgttact gcgtcagctg 241 gccgccatcg ggaataacct gaatcaggca gcgaggaagg tgaacagcgg gcagtggtct 301 tccggtaacc gggttcaggt ggtggccgca ctgatggcca tcggggatga gctgcgccgg 361 ctgcgtctgg ccgtcaggga acaggggacg cgggatgata gttaagtttc atgcccgggg 421 aaaaggcggt ggccgtggtc cggttgatta cctgctggga agggagcgta accgggaagg 481 ggcaacggtg cttcagggta atccggaaga agtccgggaa ctcatcgatg ccacgccatt 541 tgcgaagaaa tacacgtccg gtgttctctc gttcgcggag aaggcgctgc cagcgggagg 601 acgtgaaaaa gtgatggcga gttttgagcg tgtactgatg cccggtctcg aaaaaaatca 661 gtacagcatc ctgtgggtgg agcaccagga caagggacgg cttgagctga attttgttat 721 tccgaacatg gagctacaga ccggaaaacg ccttcagccg tactacgacc gggcagacag 781 gccgagaatt gatgcctggc agacgctggt gaatcaccat tacgggctgc atgacccgaa 841 cgccccggag aatcgccgga cgctgacact ccctgataac ctgccggaaa cgaaacaggt 901 gcttgctgag ggcgttactc gtgggataga cgcactttac catgccggag agataaaagg 961 ccgtcaggat gtgattcagg cgctcacaga ggcggggctt gaagtggtca gggtgacgcg 1021 aagcagtatc agcattgcag acccgaacgg cgggaggaac atcagactga aaggagcgtt 1081 ttatgagcaa tcttttacag acgggcgcgg agttcgagaa aaagctgaaa gagagagccg 1141 aatctacaga gaaaatgctg aacgacgaat tcaggaagct cggcgaatct gtaagcgagg 1201 ctgtgacctc aaacgagacg aaaatcaaag gcgctatagc ccagtttacg gcctcgacgg 1261 aggaatcgct gaaaaaacac cgggaagggg tgaaagaggc gatgatgcag caccggaagg 1321 acatgttaaa gctggcaggg agttcgggta tgaggttgct ggggatagtc tttctcctgt 1381 ttaccgcgag tggtgggacg ctctggtatc tcggcgggag gatacagacg aacctggaag 1441 aaatcagggt acaggaagag acattgcgga aactgaacgc gaagacatgg ggcgtgcgtt 1501 atcacgaggg gagcaacgga cgttttctgg ttttgcccga ggggatgaaa gccgaaacga 1561 actggacgat ggaaaacggg aaacagaatg ccgtaaggct gctacaggag taacagagca 1621 tgacggagct ggaaagacat ttgctgaacg cattagagca actgcaacag gactatatgc 1681 agcggctgaa cgaatgggag agcgccttcg tggaattgca gaaaatgttt tcgcttacgc 1741 aacgggacaa cgcgatgctg aatgagcggg tcatgcagtt gagtcagcag gtgcagcact 1801 tgagcgagca gacagaacgc ttgagccagt tatacagcga gaacaggaga taagggacga 1861 acggctgata caggaacgcg aacatgcgtt atccctggag cgtgagcgcc agctggaaat 1921 acaggaacgg acactggatg gcccttcgct gggatggtaa tcagagacag gctaaaatgt 1981 tgtcagcgcg tttccggtgc attttttggg ataatggttg gttcgggggc accgggaacg 2041 cgcttcagtc agaccttgct gaaaacacag gaacgcgtta aaacgcatac gggcgcgatt 2101 ctggtgtgtc ttttgttgct gtgttttgcc tctattgcca gatcgcgctc attcccctga 2161 acttctgttt tcccgctcag atccccgtct tcttcgcttc cgaaagcatg aaaaaaatcc 2221 gtttcagctg tctctggctg gcaattcctg cgtgattcac atggctgcat agctatgcat 2281 gtggttaaaa tttaccgggt gcgatcgcgg cagtttttcg ggtggtttgt tgccattttt 2341 acctgtctgc tgccgtgatc gcgccgaacg cgtttcagcg gtgcgtacaa taagagatta 2401 tggtaaatcc acttactgtc ttccctcata gccatcgaga taaaccgcag aaatcgtctc 2461 agccagcagc ctggattttt tcggggtaag gtctttgctg cggtaatcag tacccgcaaa 2521 ttgtgttttg ccccggagtg actttaaaaa ttcttggttg tgaaactgct gaatgcgttg 2581 ctgcacatca ctccgtgatt ttcctgtcgc tttatccttt gctcccatat cccagaactg 2641 ccggaaaaaa ggtaccatca ttcgtgttgt gtcggctttc tgggtggaaa agttgggatc 2701 aaaaccgtca tctgaagcat atacgtaatg ccgggtatgt tgttccacgc tgccctttgg 2761 ggcacaggct gtgagagcta ctgttgctgt tatcatggcg ataagacaca gtttgtttcc 2821 ggtacgtctc atgagtgtct ccctacctta aagtatttat tctaggtgag ttattatccg 2881 aagactatct tatcatcagt ctctgagcgc gttcagtgac cgaacaatct ggaccagaat 2941 ccccgtttct tttcctgctc cagctcctgc ctgagctggg ctatctcatt ctgtagctgt 3001 tcccgttctg cttcctggcg ctggcgctca gtatcccggg cttgtttatc ctcaagcatc 3061 agcgtcaggc attgtttcag ctcattcagc tcctggagaa tgcgttctgt ctgctgatta 3121 tgtggatttt cttcctgtcc cgtattgtgc ctttctggtg tctcattctg ctttaattct 3181 ccgtatgccc ggatcagttc actggtttca aactcccgtc gcccgtcctt gctggtacgg 3241 taactgacaa ggcctgcgcg catatcacgg taaaactgcg aacgcgatct gcccgtcatt 3301 ttcagtgcat cccggagtgt gtgccatgcc ataaagtgac agtgtcccat aggtgtctca 3361 tctcatggtt tcagtaaaac atactgaggc cggagaacgg taatgtttgt gctggttttt 3421 gtggcatcgg gcgggaatag ctcgtggtgt ggggggctgt ttttttgaac gttttcacaa 3481 aaacgaaaat tcccagggtt gacagggaaa acgcagcggc gtaactttaa actgtatata 3541 aaaccagtgg ttatatatac agtatttgtt tttaacggtt tgttttacaa gtcaaagagg 3601 agttagttat gcctggattt aattatggtg gacatggtga cggtactggc tggagttctg 3661 aacgtggtga tggtccggct ccgggcggtg gtatgcaggg aaacggtggc ggtcatagcg 3721 gaaataatga cagtggtagc aattctgtga gtcagcagat ttctgccatt cagaatgatc 3781 agaaacttaa acagaaagtg gtgaatatgc tgattgctgc gagaaaaatg aatcctgatg 3841 cgaaaatgat tctgggaagt attgctcctt ctggtgttat gcaggtcacc attgaggggg 3901 taacctccac gcaggccagg cagcttggtc tgggagggct ggtcatggga tataacgctt 3961 caggtgttat tggggctgtg ggcgaaatag acaccggtca ccgccttaat gcatcaggag 4021 caagtactcc cggaagcgaa acctctgtgg acagttttgt gaacggacag aaacccgccg 4081 aagaatggca tgctgtggcg aaggacagct ggaccggggc tggtccggtg aatacagggc 4141 tggttaataa cgccatcaaa agtgtccgga ttatcaaaaa aggctatgtg acgggcgttc 4201 tcacgccaga agaggtgatg aataaagcag agtacaaagc aatgcgacag gcttttgatt 4261 cccttccact ggcaaaacag ggagaggctg tcagacagat tgtcgcagcc tggagtctgg 4321 catatcagga ttttccggta aatctgaaaa aagagatggg gcgtgtcact gaacggattg 4381 ttgatgctat taacctggcg ctcattctta atcagacaga gtcccgtttg tcggaatcac 4441 aaaagaatgt tgatgtagcg aaccagatta tcagtgatac agtaaaagct attaatgatg 4501 taaataagaa aatagcagaa aaacgaaatc agcaggtatc actgactgat ttgatgaata 4561 aaaaacaaaa agaggtcgaa gatcttaaaa agatattcaa aaatcactct tatcaccgta 4621 ttcgtgatgc ccagagggaa tatgatgatg cccgaaataa atatgcttta ctggccagtg 4681 atattaatgc gctgcaggca caggtttccg gactgacggc aaggaaacag caggcagaac 4741 agaacaaggc agcagcagaa aaagcaaagg cagatgcagc ggcgaaagct gcagcagaaa 4801 aagcggctgc tgaagcgaaa gcaaaggctg aagctgaaaa agccagaaag gaagcagagg 4861 aaaaagcaaa tgatgagaag gctgttctga caaaagccag tgaaattatc atcagtgttg 4921 gtgataaggc tggggagtat ctgggtgata aatataaagt tctttctcgt gagatagcag 4981 ataatatcaa aaactttcag ggcaaaacga ttcgtagtta cgatgaggcg atggcttctg 5041 tcaataaact gatggctaat cctgatctta aaattaatgc cgccgacagg gatgcaattg 5101 tgaatgcctg gaaagcattt gatgcagagg atatggggaa taagtttgcc gcgctgggta 5161 agacgtttaa agccgcagat tatgtgatga aggcaaacaa cgtccgggag aagagtatcg 5221 aggggtatca gaccggaaac tgggggccgc tgatgttgga gattgagtcc tgggtattga 5281 gtggtattgc ttctgctgtg gcgctatcat ttttctcagc tatctttggt acttttgcta 5341 tgctgggtgt tttttcgact agtttagctg ggatcttggc tgttattttg gctggtttag 5401 ttggggcgtt gattgatgat aattttgttg ataagttaaa taatgaaatt attcgtcctg 5461 cgtattaatt gagagtcgaa aggtagtcag gaggactacc tttctttcca gattttatat 5521 actgcaactg gaacataaca caggatgtag gtcatgaaga aagaacaata atacatgcag 5581 atgaaaaaaa ataataatgt aaaatcattc tcagacatcc atctaactgt ccttcctgat 5641 gtggttaatt cgaagttatt ccacaggaag aaatacgcat aaaaaacata aataaaaggg 5701 gttaatatgc aggcggtaat tagtttttct ctgttgattc ctttttctag ttttctgtgt 5761 cggaactgaa ggataaaagt gataattgcc agtaaagggg cgcttttgcc gtagatatcc 5821 atcaactttg tcattatagg attgtatgag gaaattaccg aaggtatgtt tattatgcta 5881 tcgggaatga tgttggttaa atataggttt ggatttaact tgtaaattat aagaataata 5941 aagaaaggaa ttgttcctgc aaaagcaatc caagaaagca tgttgtttaa ctgtttgttg 6001 tcattatgct ctttttgcat tggaataata ccccatgttt tatattttta ttaatccaat 6061 cgttaatgta tataagcata tcatgctatt tgagtaatgt tagagggaat atatgaaaaa 6121 aatattatca ggagggatgg ttgtcttgat ggtttttcta tcaggctgcc aggctaatta 6181 cattcgtgat gttcagggtg ggacggtcgc gccatcttct tctgaactaa cagggatctc 6241 ggttcagtag aaaaaaagat caaaggatct tcttgagatc ctttttttct gcgcgtaatc 6301 tgctgcttgc aaacaaaaaa accaccgcta ccaacggtgg tttgtttgcc ggatcaagag 6361 ctaccaactc tttttccgaa ggtaactggc ttggaggagc acagtcacca aaacctgtct 6421 tttcagttta gccttaaccg gctcataact tcaagaccaa ctcctctaaa tcagttacca 6481 gtggctgctg ccagtggcgt taagtcgtgt cttaccgggt tggactcaag acgatagtta 6541 ccggataagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc cagcttggag 6601 cgaacgacct acaccgaact gagataccta cagcgtgagc tatgagaaag cgccacgctt 6661 cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac aggagagcgc 6721 acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac 6781 ctctgacttg agcgtcggtt tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac 6841 gccagcggcg tggccttttt cctgttcctg gtcttttgcc cacatgttct ttccggcgtt 6901 atcccctgat tctgtggata acagcatttc gtttttgagt gagtagatac cgctcgccgc 6961 agtcgaacga ccgagcgtag cgagtcagtg agcgaggaag cggaaaagcg cctggacgtg 7021 cattttctcc ttacgcatct gtgcggcatt tcacacccgg tatggcgcac ttttcataca 7081 atccgcactg atgccgcatg gttaagcctg tatacactcc gctatcgcga cgtgactggg 7141 tcatggctgc gccccgacac ccgctaacac ccgctaacac ccgctgacgc gccctgacgg 7201 gcttgtctgc tcccggcatc cgctcacaga taagctttga ccgtctccgg gagctgcatg 7261 cgtcagaggt tttcaccgtc atccccgaag cgagcgaggc aactgcggta aagctcatcg 7321 gcgtggtcgt aaagcgattc acagatgtct gcctgttcat ccgcgtccag ttcgttgagc 7381 ttctccagca gcgttaatgt ctggcttctg ataaagcggg ccatgttaag ggcggtt //