LOCUS NC_010659 5114 bp DNA circular BCT 25-JUL-2008 DEFINITION Shigella boydii CDC 3083-94 plasmid pBS512_5, complete sequence. ACCESSION NC_010659 VERSION NC_010659.1 GI:187734267 DBLINK Project:15637 KEYWORDS . SOURCE Shigella boydii CDC 3083-94 ORGANISM Shigella boydii CDC 3083-94 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella. REFERENCE 1 (bases 1 to 5114) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (07-MAY-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 5114) AUTHORS Rasko,D.A., Rosovitz,M., Maurelli,A.T., Myers,G., Seshadri,R., Cer,R., Jiang,L., Ravel,J. and Sebastian,Y. TITLE Direct Submission JOURNAL Submitted (01-MAY-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001060. Source DNA and bacteria available from Jacques Ravel, Institute for Genome Sciences, Department of Microbiology and Immunology, University of Maryland School of Medicine; jravel@som.umaryland.edu. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5114 /organism="Shigella boydii CDC 3083-94" /mol_type="genomic DNA" /strain="BS512; CDC 3083-94" /db_xref="taxon:344609" /plasmid="pBS512_5" gene 352..1287 /locus_tag="SbBS512_D0001" /db_xref="GeneID:6273323" CDS 352..1287 /locus_tag="SbBS512_D0001" /note="identified by match to protein family HMM PF03090; match to protein family HMM PF08708" /codon_start=1 /transl_table=11 /product="Rep protein" /protein_id="YP_001883068.1" /db_xref="GI:187734271" /db_xref="GeneID:6273323" /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQ PHAQFWLVFDVDRVGAAIDWSDRNAPAPNITVKNPENGHAHLLYALNLAVRTAPDASV KALKYAAAIERALCEKLDADVNYSGLICKNPFHLEWQVMEWREEAYALDELADYLDLR ASERRSVDKHYGLGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPV PLSPPECRAIGKSIAKYTHRNFTPESFAQYVADTHTPEIQAKRGRKGGIAKGEAYDDK RFMALCMLENGYSQKAIAAMLNVHRNTIRNWAMHK" gene complement(1481..2014) /locus_tag="SbBS512_D0002" /db_xref="GeneID:6273325" CDS complement(1481..2014) /locus_tag="SbBS512_D0002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001883069.1" /db_xref="GI:187734269" /db_xref="GeneID:6273325" /translation="MILRSHTQADKVILCIISTHINGKSAEVRMTNREEWLSAKIAYI NGLKSPSEQQRLLVLLAEKKNRTTTDEKTLSALIRAEKTAEKAAAAKARVTAIIAAER KAAARAERKARDHELYKAAGLMIVAGLVDSKTGKPKFSAAELVGALAGIAELPHNHPK WQEWEKRGKELLTKDSA" gene 2099..3649 /locus_tag="SbBS512_D0003" /db_xref="GeneID:6273324" CDS 2099..3649 /locus_tag="SbBS512_D0003" /note="identified by match to protein family HMM PF03389" /codon_start=1 /transl_table=11 /product="mobilization protein A" /protein_id="YP_001883070.1" /db_xref="GI:187734270" /db_xref="GeneID:6273324" /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSG NMPSWAKKNPEELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGD RHAYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKK ASIPQTAGERKAALVALRSRWADVQNEHLARHGHESRVDHRSLKEQGINRTPEVHLGP VQAASLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPEL LLQYRKVMKMVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARY LDKLGRNVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHER NEFRNKLQQAESEWDKENAAFKRTEGYKYVGELDRYREREILAAASLENTRQKVAEEV SVARSQMLSLEPELSISGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWSRGASRSN ERDQDMER" gene complement(3845..4828) /locus_tag="SbBS512_D0004" /db_xref="GeneID:6273322" CDS complement(3845..4828) /locus_tag="SbBS512_D0004" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001883071.1" /db_xref="GI:187734268" /db_xref="GeneID:6273322" /translation="MTVGKAFDTRSDCINGTWSEKEDNRGRTIVTYTCDISESGLKII NSAIMQEPEDKAEYSITQNNNSIKSTNESLEEYKQKTPLVEKTKEVIIDHIRKLNSAF NEDPMIYSKLTISPYLDRMLYLKDHNDNALNEICGGYEYIQSADSYSWRDVSEEYAKE SCEKHIYKVYQSFKKNASPLITKNFPGFYERVPPCENADECIKKTNIYFDDNFLNIYK RSQDRAPQIISDLKKHNIEIGEKLNDCRKKLNISDAKLTYYWFVTDTGGVDYLDGVLT YNFQGKNRAENFHKQLLQYAYINYSKNQIPRDFVTSIKNSIYYKIEDCTKF" ORIGIN 1 ttttgacctg ttcgctgttc aaaacgagtg aaaccggaca tgaatcgctt tcgtgcatag 61 ttatgcagcc ccctgaaaac aattctggcg cgtttttttg gtctggcctg ttgtttccct 121 gtctttttgc gttttttgcg ccagaaagcg actgagggcg ttttaagggg ggcgcacaac 181 gggagttatg gtaaatggat cgattttgcg ggaaggctcg acaggttttg tcgttggggg 241 tagtgtaagc gactgaaaaa caaacgcccc tgaaattcgt gtctatccgc caagactttc 301 acgaaaatac aggggcgatg tcggtcgata acctggaagg aatcgtaaca catgagcgcc 361 gcgcttcaat acttcgaaga aaatttaccc caccgtccct atcacacgga tgatctcgct 421 ttcggtcttc gtatctccgg caaagggcgt gcgctgcttg ctcgctacat ccagcaaaat 481 cagcctcatg cgcagttctg gctggttttt gacgttgacc gagtaggagc tgcgattgac 541 tggagcgacc ggaacgcccc cgcgccgaac atcaccgtaa aaaatcccga gaacgggcac 601 gctcacctgc tctacgcgct caatcttgcc gtgagaaccg cgcctgatgc gtcggttaag 661 gcgctgaaat acgccgctgc aattgaacgt gcgctgtgtg agaaacttga cgcagatgtg 721 aactacagcg gactgatttg caaaaatccg ttccacctgg aatggcaggt gatggagtgg 781 cgcgaggaag cctacgccct cgatgaactg gctgattatc tcgatttgag agcctcagag 841 cgtcgtagcg tcgataaaca ttacgggctg gggcgaaact gccatctgtt cgaaatgacg 901 cgcaaatggg cttacagggc gattcgtcag ggctggccag cattctcaca gtggcttgat 961 gctgtgattc agcgtgtcga aatgtacaac gcatcgcttc ccgttccgct ttctccgcct 1021 gaatgtcggg ctattggcaa gagcattgcg aaatacacgc acaggaactt cacgccggaa 1081 agtttcgcac agtatgtggc tgatacgcac acaccagaaa tacaggccaa gagaggccgg 1141 aaaggtggca tcgctaaagg cgaagcctac gatgacaagc gtttcatggc gctatgtatg 1201 ctggagaatg gatattctca gaaagctatt gcggcgatgc tgaatgtaca tcgtaatacg 1261 atccgtaatt gggcaatgca caaatagcct atatcagata acagcgcctt ttcggcgtct 1321 ttttgagcag cgggctttcc ggcggttttc tcctttcagc ccagcaatgg tgcggcttac 1381 cgtatgattg aggtgatcgt gctcgccgca gtctcatgac cgagcgtagc gagcgaatga 1441 gcgaggaagc accagggaac cggaacgtga acggaggctc ttacgcactg tctttggtga 1501 gtagctcttt cccgcgtttt tcccattcct gccattttgg atggttgtgc ggtagctctg 1561 cgattcctgc gagtgcgcct accagttcgg cagcactaaa ctttggcttt ccggttttgc 1621 tgtccaccag tcctgccaca atcatgaggc ctgcggcctt gtagagttca tgatcccgcg 1681 cctttcgttc cgcccttgcg gctgccttcc gttctgccgc tatgattgcc gttactctgg 1741 cttttgctgc ggctgctttc tctgcggttt tttctgcccg tatcagtgcg gacaacgttt 1801 tttcatccgt cgttgttcgg ttttttttct ctgccagtaa cacaagtaat ctctgctgct 1861 ctgatggtga tttcagtccg ttgatgtagg caatttttgc acttaaccac tcttcacgat 1921 ttgtcattct tacctctgca cttttgccgt taatgtgagt tgatattatg cataatatca 1981 ccttgtctgc ctgcgtgtga gaccgtaaaa tcatccctga ttaattcagg gatgcgcact 2041 tagtagtttc tctccttcgt cgagaaactg tgcgctcctg cggagggcta aaaggcagat 2101 ggcaagctac cattgcactg tcaaagctgg agcaaaaggc agtgccttaa aacatgctga 2161 ttacatttcc agatccggcg aatataagag ttacaaatcg cgggaggatc tggaattttc 2221 gtcatccggt aacatgccat catgggcgaa gaaaaatccc gaagagctat ggaaagccgc 2281 agatgaattt gaacgaaaaa acgggactgc ataccgtgaa attgagatcg cgttaccgcg 2341 tgaactgaca cgcgaacaac ggatagaact tgttgaagat ttcgtgcaaa aggaacttgg 2401 cgatcgccat gcctaccagt acgcgatcca caatccgcca ggtgcaatcg acggaaagga 2461 acagccacac gcgcatatca tgttttgcga gcggattaat gatggtattg aacgcgatcc 2521 acagcaattt tttaaacgtg ccaacagcaa atcaccagag cggggaggcg caaaaaaagc 2581 gagtattccc cagacagccg gagagcgaaa agccgccctt gttgcgctgc gttcccgctg 2641 ggcagatgtg cagaatgagc accttgcgcg acacggtcac gagtcgcgcg tagatcatcg 2701 ttctctgaaa gaacagggta tcaatcgcac gccggaagtt catcttggcc ccgttcaggc 2761 cgccagtctg aatggggagc agattgttgc aatccaggaa cggaggaatg ccgagcggga 2821 actcaagacc gccagagatg ccgcaaatgc cattcagcag gaacaggagc aaaagcaaaa 2881 aatcaaggca gttgagcctg ttcgttcagc ccgttcaccg gagttattgc ttcagtaccg 2941 caaggttatg aaaatggtca ttcagggaga ggcaaggctt gctcgtttag gggatgccaa 3001 tcccaatgcg ctcaaagaac ataagctgct tcagaatgcg aaagctaaaa aagactctct 3061 ttccgaatgg agtagacgaa tatatgaagg ggcacggtat ttagacaaac tggggcgtaa 3121 tgttgtttcc gcacaaaggg agctgcggga gctacaggaa caacgcaatg ctttgaatgg 3181 gattcgtggc ctgtttcggg gggctgacaa aagggagatt gatgcgcgta ttctggagca 3241 aaaaagtgtg ctggaaaccg ctgaacatga aaggaatgaa ttcaggaaca agctacagca 3301 agccgaatcc gagtgggaca aagaaaacgc tgcttttaag cgtaccgagg gatataagta 3361 cgttggggag ctggacaggt acagagaacg cgagattctg gcggcggcat ctttagagaa 3421 caccaggcaa aaggttgctg aagaggtatc cgttgcccgt agccagatgt tatctctgga 3481 gcctgaactc agtatatctg gagatgaaaa agctcaaatg cgacatgagt tactggcaga 3541 aatggcgcag gaacggcagc aacaggagga aaaagcactg cgtatacagc gatcctggtc 3601 caggggggca tcacgtagta acgaacgtga tcaagatatg gagcgttgaa aatgtagcaa 3661 tatcgggact gcgccccgaa ccccgccaac gtttcacgga acgcgaaaaa attccgcgtc 3721 ccgttcaccg ttttctgaat gagaaaaatt gtcgttttga tttactcaca gttcagatta 3781 atgaagttaa caggtgttaa atatttgcag gtggttatat gtgtaaccac ctgtaaggga 3841 aggactaaaa cttagtgcaa tcttctattt tataataaat actatttttt attgatgtta 3901 caaagtcccg aggtatttga tttttgctgt agttaatgta tgcatattgc aatagttgtt 3961 tatgaaagtt ttcagcccta ttctttccct gaaaattata tgtcaacacc ccatctaaat 4021 aatcaactcc tccggtgtct gttacaaacc agtaataggt taatttggca tctgagatat 4081 ttagtttttt tctgcaatca tttaactttt cacctatttc tatattgtgt ttttttaaat 4141 cagaaattat ttgaggtgct ctatcttggc ttcttttgta gatatttaga aagttatcat 4201 caaagtatat atttgttttt tttatgcatt catctgcgtt ctcacagggg gggacacgtt 4261 cgtagaaacc ggggaagttt ttagttatta atggtgatgc atttttctta aatgattgat 4321 atactttata tatatgcttt tcgcatgatt cttttgcata ctcttcactt acatcacgcc 4381 aactgtaact atcggcagat tgaatgtatt cgtacccacc acaaatttca tttagcgcat 4441 tgtcattatg gtcctttaga tatagcattc tgtctaaata agggctaatt gtgagtttgc 4501 tatatatcat tggatcttca ttaaaagcac tgtttagctt tcttatatga tctattatga 4561 cctcttttgt tttttccacc agaggcgttt tctgtttgta ttcctctagt gattcattgg 4621 ttgattttat gctgttgtta ttttgtgtta tagaatattc agccttatct tcaggttctt 4681 gcataatggc tgaatttatt atttttaggc cactttcact aatatcacag gtatatgtga 4741 cgatggttct gcctcgatta tcctcttttt cactccatgt gccattgatg caatcactcc 4801 ttgtatcgaa ggctttacca acagtcattg agtcgtcaat gtcgtaatat acgaaagact 4861 ttaccttgct tattccatca gagtcgcatc ctgaaataaa aaatgacgac aataaaggaa 4921 ggatatgttt aaagttaata ttcatttttc ccatttttat ttctaacaat aacgaggaaa 4981 tattaataca ggcgatatgt taatggaatc catacatacc gataaaccga cttactatgt 5041 ttgtgctcaa cgtcttacgc agttcgaaaa gatttcgcac cagttcacct ttttctggat 5101 gagaaagttt gctg //