LOCUS NC_010550 1765 bp DNA circular BCT 05-APR-2008 DEFINITION Exiguobacterium sibiricum 255-15 plasmid pEXIG02, complete sequence. ACCESSION NC_010550 VERSION NC_010550.1 GI:172059059 DBLINK Project:10649 KEYWORDS . SOURCE Exiguobacterium sibiricum 255-15 ORGANISM Exiguobacterium sibiricum 255-15 Bacteria; Firmicutes; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium. REFERENCE 1 (bases 1 to 1765) AUTHORS Rodrigues,D.F., Goris,J., Vishnivetskaya,T., Gilichinsky,D., Thomashow,M.F. and Tiedje,J.M. TITLE Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov JOURNAL Extremophiles 10 (4), 285-294 (2006) PUBMED 16489412 REFERENCE 2 (bases 1 to 1765) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kiss,H., Chertkov,O., Monk,C., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Vishnivetskaya,T., Rodrigues,D.F., Gilichinsky,D., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of plasmid2 of Exiguobacterium sibiricum 255-15 JOURNAL Unpublished REFERENCE 3 (bases 1 to 1765) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-APR-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 1765) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kiss,H., Chertkov,O., Monk,C., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Vishnivetskaya,T., Rodrigues,D.F., Gilichinsky,D., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (02-APR-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001024. URL -- http://www.jgi.doe.gov JGI Project ID: 2662203 Source DNA and bacteria available from James Tiedje (tiedjej@msu.edu) Contacts: James Tiedje (tiedjej@msu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..1765 /organism="Exiguobacterium sibiricum 255-15" /mol_type="genomic DNA" /strain="255-15" /db_xref="taxon:262543" /plasmid="pEXIG02" gene 49..942 /locus_tag="Exig_3056" /db_xref="GeneID:6172514" CDS 49..942 /locus_tag="Exig_3056" /note="KEGG: lhe:lhv_0265 putative replicative protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001806717.1" /db_xref="GI:172059060" /db_xref="GeneID:6172514" /translation="MEHEKSSNISPSSTVRVTKMNHLVEVQHMERMNRTNHIQKLDKE RYLNLKTGEIGEFKQGEVRSDSLNSLRQTFKKLRYLINTNYVGAGNELFITLTYKENM TDVKRLYSDFKKFMLKFRYKYEKQYGSIDYMTVVEPQERGAWHHHLLVRFNDMTGSKM YIPNNDVAALWGHGFTNMHSLNGVDNIGAYLSAYLADVELTTDNVFLAFDDNVEVVSK VVDGQEKKFIKGGRLHLYPSGMNLYRKSKGIKMPVREEMRYGDIKKVVGSEKPHYVKT LVVEQDDFKNTITYEQYNTKR" gene 1388..1615 /locus_tag="Exig_3057" /db_xref="GeneID:6172516" CDS 1388..1615 /locus_tag="Exig_3057" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001806718.1" /db_xref="GI:172059061" /db_xref="GeneID:6172516" /translation="MANENEMKRFNIRMPQDMFDRIEKTAHAKGVPVSAFINLKMDEI LKQDEMAQSMNLLTDPVAFAKILEQYNGGKK" gene 1612..1758 /locus_tag="Exig_3058" /db_xref="GeneID:6172515" CDS 1612..1758 /locus_tag="Exig_3058" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001806719.1" /db_xref="GI:172059062" /db_xref="GeneID:6172515" /translation="MSTPVERLKETLDEFSDEHMMITVSRKDLEALIRSYENLKKELE KRSE" ORIGIN 1 tttattaact tgattttaat taaacattag cagaaaagcg gtgaggttat ggaacacgaa 61 aaaagctcta atatttctcc ttcctctacg gtgcgagtaa ccaaaatgaa ccaccttgtg 121 gaagtgcaac atatggagcg aatgaatcgt actaaccata ttcaaaagtt agacaaggaa 181 cggtatctta atctcaagac tggtgagatt ggtgagttta aacaaggcga ggttagaagt 241 gacagtctta actctttaag acagacgttt aagaagctcc gttatttgat taatactaac 301 tatgtgggtg ctggtaatga gcttttcatt acccttacat acaaagagaa tatgaccgac 361 gttaagcgtt tatatagtga ttttaagaag ttcatgctta agttccgtta taagtacgaa 421 aaacagtatg gatcaattga ctacatgact gttgttgaac ctcaagagcg tggggcatgg 481 catcaccatt tactcgttag attcaacgat atgaccggta gcaagatgta tattcctaat 541 aatgatgttg cagcactgtg ggggcatggt ttcacgaata tgcattcttt aaacggtgtc 601 gataatattg gtgcgtatct gtcggcttac cttgctgatg tggaattgac tactgataat 661 gtgtttttag cttttgatga caatgtagag gttgtttcga aggttgttga tggtcaagag 721 aagaagttta tcaagggtgg tcgcttgcat ctatatccga gtggcatgaa tctttaccgt 781 aagtctaaag ggattaaaat gcctgttcgt gaagaaatga gatatgggga cataaaaaaa 841 gtagtagggt ctgagaaacc ccactacgtc aagactttag tcgtcgagca ggacgacttc 901 aaaaacacta tcacctacga acagtataac acaaagcgtt aacaactgaa tagcggaagg 961 gagggctgcg aaccctcctt tttgcgtacc cggaaagcgt agcgaagacg gagcgcaaac 1021 tgagacgcat gtccagttga gcaacggctc gcacgctact ggatacacaa ctggaaggta 1081 cggcccccac ctactaacag gggggtagga aatacatgtg taagtgccgt agggcattgg 1141 tgcttatgga ttcaggtcac ttttaaaact gtacacgtta gcgtttatgt cgcgaaagct 1201 tattgatatt gagcagaccc ccataaacac tgaaaccagt ggctcccaga ggggcgaaga 1261 ccctcggagg cgatgggttt gggggtttgg gggtcagagg ctcgatgtca ataagtcgtg 1321 aaataaaaag cgttgacata gtaagtccta aaggtgtata ttatacacag aagggagttg 1381 gataataatg gctaacgaaa atgagatgaa acgttttaat atcagaatgc cacaagatat 1441 gtttgaccgt atcgagaaaa cggctcatgc aaagggtgtt ccagtttcgg catttatcaa 1501 cttgaaaatg gatgaaattc tgaaacaaga cgaaatggcg caaagtatga atttgctgac 1561 tgatccagtt gcctttgcaa aaattctaga acagtataac gggggaaaaa aatgagtaca 1621 ccagttgaac ggctcaaaga aactctagac gagtttagtg atgaacatat gatgattact 1681 gtaagccgaa aagatttaga agctctaatt cgttcgtatg agaatctgaa aaaagagttg 1741 gaaaagcgtt cagaatgagt ttgtc //