LOCUS NC_010549 4885 bp DNA circular BCT 05-APR-2008 DEFINITION Exiguobacterium sibiricum 255-15 plasmid pEXIG01, complete sequence. ACCESSION NC_010549 VERSION NC_010549.1 GI:172059053 DBLINK Project:10649 KEYWORDS . SOURCE Exiguobacterium sibiricum 255-15 ORGANISM Exiguobacterium sibiricum 255-15 Bacteria; Firmicutes; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium. REFERENCE 1 (bases 1 to 4885) AUTHORS Rodrigues,D.F., Goris,J., Vishnivetskaya,T., Gilichinsky,D., Thomashow,M.F. and Tiedje,J.M. TITLE Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov JOURNAL Extremophiles 10 (4), 285-294 (2006) PUBMED 16489412 REFERENCE 2 (bases 1 to 4885) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kiss,H., Chertkov,O., Monk,C., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Vishnivetskaya,T., Rodrigues,D.F., Gilichinsky,D., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of plasmid1 of Exiguobacterium sibiricum 255-15 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4885) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-APR-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 4885) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kiss,H., Chertkov,O., Monk,C., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Vishnivetskaya,T., Rodrigues,D.F., Gilichinsky,D., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (02-APR-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001023. URL -- http://www.jgi.doe.gov JGI Project ID: 2662203 Source DNA and bacteria available from James Tiedje (tiedjej@msu.edu) Contacts: James Tiedje (tiedjej@msu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4885 /organism="Exiguobacterium sibiricum 255-15" /mol_type="genomic DNA" /strain="255-15" /db_xref="taxon:262543" /plasmid="pEXIG01" gene 240..707 /locus_tag="Exig_3051" /db_xref="GeneID:6172512" CDS 240..707 /locus_tag="Exig_3051" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001806712.1" /db_xref="GI:172059054" /db_xref="GeneID:6172512" /translation="MKNMDLTILDVIEFNKQMKFLDVAKTHAPVGREKLREAMKLAGA TFDQQTKRWHIQEGHPNEKKRVLDFVQSSRITKPNQEKAQDPLRVDPVTGQSQLDDGY FEIETKPEKIIRKKVSLDLDVTLHKRLKHTALEKDVKLYELIEGILRNYIEKK" gene complement(758..1009) /locus_tag="Exig_3052" /db_xref="GeneID:6172511" CDS complement(758..1009) /locus_tag="Exig_3052" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001806713.1" /db_xref="GI:172059055" /db_xref="GeneID:6172511" /translation="MKNAKNILIANSIVLIIILIAQLISPSIGSYLLDSKIEFLDENS TYWIAKLIETSSVQGFCLLVGLLNISLIAVSVNHLLKQK" gene complement(1030..1737) /locus_tag="Exig_3053" /db_xref="GeneID:6172513" CDS complement(1030..1737) /locus_tag="Exig_3053" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001806714.1" /db_xref="GI:172059056" /db_xref="InterPro:IPR001917" /db_xref="GeneID:6172513" /translation="MKKYKFLFPALLMTTFISSNVIHAEEPSIDPDLIEEVDSIGVNE DTSELVEGIDYDIEEATVYSEESSDLENSNFESSAPLQSSSNNDRITPSMVLMPGPEY KFSGVKYIKETIGKSILWKTSGVPGVTIGLDFTKSRNASVSTTYGASYHDISQSLSFT IGKSYSVSSSGSYKVPKSRGGKAIKRTEVTGQPIYKKYSVKVSKRNDILFRYDYKGLL YAYKPIGVHIKYKHYYK" sig_peptide complement(1030..1104) /locus_tag="Exig_3053" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 25" gene complement(2550..2891) /locus_tag="Exig_3054" /db_xref="GeneID:6172509" CDS complement(2550..2891) /locus_tag="Exig_3054" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001806715.1" /db_xref="GI:172059057" /db_xref="GeneID:6172509" /translation="MKNKTIIYFMVILFLGIGLIGAWGYKTLYYDEKQSTSENIDGFL KENNYMQNVSTKEIVMDTTTDEYFAKVTFKDEPNNEYEIYQTGSNHFKIVGYKDGVQI TNKKEGKYIKR" sig_peptide complement(2550..2624) /locus_tag="Exig_3054" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.703) with cleavage site probability 0.505 at residue 25" gene 2961..3755 /locus_tag="Exig_3055" /db_xref="GeneID:6172510" CDS 2961..3755 /locus_tag="Exig_3055" /note="KEGG: bcy:Bcer98_2290 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001806716.1" /db_xref="GI:172059058" /db_xref="GeneID:6172510" /translation="MIKKSFGIATLVLSLALTSPNLSYAEDLSQSKNDLSKSTYSNFI GEGVVSETVSYNSWVDINTNDSFEELEEEFPVPDRLMEVDPSNEKDKSYSIPSVSYSI MAATSSKGPVLKKGDILVSNATSSYGLTGHAGIAISSSQVLHISGAGAHPKVISSKTW QDRYGIVKGQKEGSNIKTNVYRIKSTTNASKAANWAVKNYKGKKYDYIITPTISSKNP TYCSKIVWQAYRSIKAVNYPAGDIPTPYGLPKYFKKAQNLKGMGYL" sig_peptide 2961..3038 /locus_tag="Exig_3055" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 at residue 26" ORIGIN 1 cgccagcaag cgaagtggag gcgtaaacgc cggaacgaag tgcggtagat caggaaagcg 61 aaaatcttaa acaggcatcc agagagaaag aagaaaggat tgtttatatc aattaccgaa 121 cgttctagag aagcgaaact cgaagaaaga acgcaggtgt ctagccctat catccagaaa 181 attaagaggg taaaaaggaa ggttaatagt tggttatttg ttaaggagga tttgaaggaa 241 tgaagaatat ggacttaacg attctggatg tcattgaatt taacaaacaa atgaagttcc 301 tcgatgtagc aaaaacgcat gctccagtag gacgtgagaa gcttcgtgag gcgatgaaac 361 ttgctggagc gacgtttgat caacaaacca agcgatggca tattcaagaa ggtcatccga 421 atgagaagaa acgggtgttg gattttgttc aatcgagtcg tatcactaaa ccgaatcaag 481 agaaagcgca agatcctttg cgagtggacc ctgtgacggg acaatctcaa ttggatgatg 541 gttatttcga gattgagacg aagccggaaa agattattcg taaaaaagta tcgcttgatc 601 ttgatgtgac tttacataag cgtttgaaac acaccgctct tgagaaagat gtgaagcttt 661 atgagttaat tgaagggatt ttacgtaact atatagagaa gaaatgaatt gaaaaggcta 721 cttcgtctct tgataagacg gagtagcctt tttcaattca tttctgtttt aaaaggtggt 781 ttactgacac tgctattaaa ctaatgttta ataaaccaac taagagacaa aatccttgca 841 cagaacttgt ttcaatcaat ttcgcaatcc agtatgtaga gttttcatct aaaaactcta 901 tttttgaatc tagcaaataa cttccgatag atggtgaaat caattgggct attaagatta 961 ttattaaaac aatcgaatta gcgattaaga tgtttttagc gtttttcata atagattgtt 1021 tatctcctgt tacttgtagt agtgtttata ttttatatga acaccaatcg gtttgtaagc 1081 atataataac cctttatagt catatcggaa aagaatatca tttctttttg aaactttcac 1141 agaatatttt ttatagatcg gttgccccgt tacttctgta cgttttatcg ctttcccacc 1201 gcgactcttt ggcactttat aactaccact agaacttact gagtaacttt ttccaattgt 1261 gaaactcaaa ctttgagaaa tgtcatgata agatgcccca tatgtagtcg aaactgaagc 1321 gtttcttgat ttagtgaagt ctaatccaat cgtcacacca ggtactccac tagttttcca 1381 tagtatagat tttccaattg tttctttgat atacttcaca cctgaaaatt tatattctgg 1441 acctggcatc aaaaccattg aaggagtaat tctgtcgtta ttactacttg actgaagtgg 1501 agcagaactt tcgaagttac tgttttctag atctgaagat tcttcagaat aaacagttgc 1561 ttcttcaata tcatagtcaa tgccttcaac taattccgaa gtgtcttcgt ttacaccgat 1621 agagtcaacc tcttcaatta aatcaggatc gattgatggt tcttctgcat gaatgacgtt 1681 tgaagaaatg aaagtagtca tgagtagtgc tgggaaaaga aacttatact ttttcaatat 1741 tagtgcctcc ttctataaat tgttaatatg taatcgtgaa taaccataac attaccattt 1801 ttaaatgtaa aacatttggt aaatgaaatg ctgccgattt tttgttcgaa aactagcaaa 1861 aaaccgtaag gttgcgtgaa atgacaattc ctcgcaatct tacgactggt agaccaacac 1921 tttcaaaaaa agagacgaga aggatgtgtt ttcacaaact ttttgtctct tttttgcatg 1981 gtgttttttt agtgaatcgt tttatttaag tgttctcttt tgtgtattta attctttttt 2041 tgttgctgca gatctatctg gtgaatcagt tttgagaggt atatcgagtc cggaaaatga 2101 tttttaaaat cacaaaactt gaaaagaaag aggcaaatta aaatacacct taaaaccaaa 2161 aatgcacaaa acagtgaaaa agagcataag gggaaactgc tatcactaag cgtgctaggc 2221 taggcaaagc ctagtgtttc cctgatatca tcaaaatcgc gaaaaggtca caccccgtgc 2281 cagtgaaaac gccattttgg cacggggtgt gcctctgttt ttcactaaat attttgtgtt 2341 cccaatgaaa ataatatcaa gtggagcgcc ttctttttta tttaagaggt attttcaagc 2401 tttgtatttt ctagccactt tgtggaggca atacagcttg tcggggattt ccccgacccc 2461 ctttctttaa aaattaatgc cataaaaaaa gacattctct aatagaaatg tctttgacaa 2521 tacaataatg tctatatttt tattctggac tatctcttaa tatatttgcc ttcttttttg 2581 tttgtaattt ggaccccgtc tttataacca acaattttaa aatgattcga tcctgtttga 2641 tagatttcat attcattatt aggttcgtct ttaaaagtta ctttggcgaa atactcatca 2701 gttgttgtgt ccataacaat ttcttttgtt gaaacatttt gcatgtaatt attttctttt 2761 aaaaatccat ctatattctc actagtagat tgtttttcat cataataaag agttttataa 2821 ccccatgctc caattaagcc gatccctaaa aaaagtataa ccataaaata tataatagtc 2881 ttgtttttca taaattatcc ctaccaatcg tttatttttt acattataat caatttatac 2941 taaaaaatgg atgttttaat ttgattaaga aaagttttgg tattgctact ttggttttat 3001 ctttagcatt aacatcccct aacttatcat acgctgaaga tctaagccaa tcgaaaaatg 3061 acttatctaa aagtacgtac agcaatttta ttggtgaagg tgtggttagc gaaactgtat 3121 cttacaattc atgggtggac atcaatacta atgattcttt tgaggaatta gaagaagaat 3181 ttcctgtccc tgatagatta atggaagttg atccatcaaa cgaaaaagat aagagttaca 3241 gtattccctc agtatcatat tcaataatgg ccgcaacttc ttctaaagga ccggttttaa 3301 aaaaaggaga tattttagtt agcaatgcta catcttctta tggtttgacg gggcatgctg 3361 gaattgcaat cagttctagc caagttcttc atatctctgg tgctggtgcc caccctaagg 3421 tcatttcatc taaaacctgg caagatcgat atggaatagt gaaaggacaa aaagaaggct 3481 caaatataaa aacgaatgtt tatcgtataa aaagtacgac gaatgcctct aaagcagcta 3541 attgggctgt gaaaaattat aaaggtaaaa aatatgatta cattatcacc cctacaattt 3601 cttctaaaaa tccaacatac tgttcgaaaa ttgtttggca agcctacaga tctattaagg 3661 ctgtaaatta tcctgcagga gatatcccta ctccgtatgg attaccaaaa tactttaaaa 3721 aagctcaaaa tcttaaaggg atgggttatc tctaataaca tatgtatata aagaggactt 3781 taaaatagta gttattttaa agtcctcttt actgtttaaa aaatattaag atctgaattg 3841 tgttaaccaa aagaatagtc tttttatgaa ttatagctat tttgatattg tcataaaaat 3901 gatgtaggcg tacaataagc agtaacaaaa tacggacgga acaacaaaaa acgccacttc 3961 tcctatctac ttgtcgccaa acgagtagat gatcaacgaa gtgacgcttt tgaatagcga 4021 gtgctcgaac acttgctatt gaatagttga aggcacattg gacgtgactt caacttagat 4081 gcacttatca tactaaggaa acctttaaca ttcaaggttt tagtatagaa aaaggacatc 4141 attcagtagc aagttttacg aaacacgcta ctgaatgatg tcctttttgt tttggtctta 4201 cataaaaaga ggtctgcact cgctctttaa acgagtaggt tcatccagcc gacgcagtaa 4261 aatggatcgg tcgtcatcgc agttccagca cgtggcgcga cgttagcagg ggaaggacgg 4321 agagccctgt acatagccta agtcccgaag ggatacggta aaaatcgttg agaggttcag 4381 acggggtcat atggtacgag accgtaggca gtcccacgac aaacggtggg gaatttccta 4441 gtaggcggct gtatgattgc tgtgacacga cgtatgacgg ccaaaagccg tcatacagtg 4501 ggttatatga cgagtcgccg aaaggcagca aggtagggcg tggaaacgcc ttgtgtgcgc 4561 gagagcgcag cgagtcatat cgtaggggcg agactcccct acaatcttgg aacgcctaga 4621 catacggata cctcgtccta cactggacgc agtgcaccga tgggcagatt taactctttc 4681 cttttgcaag gggttagtct gcccatccag ccgttttcct cgcctgcctc ccgcagtatg 4741 ccctcgctct tcaggttcta caagtctttt tatttaaaaa aagaatagaa agttcaggaa 4801 agatgaagat caacgacggg ttcatgtgtc gtgcgaggca tgttgaagga gggagcgaag 4861 cgattccatt caacatgccg cagtg //