LOCUS NC_010486 4074 bp DNA circular BCT 01-OCT-2008 DEFINITION Escherichia coli SMS-3-5 plasmid pSMS35_4, complete sequence. ACCESSION NC_010486 VERSION NC_010486.1 GI:170650751 DBLINK Project:19469 KEYWORDS . SOURCE Escherichia coli SMS-3-5 ORGANISM Escherichia coli SMS-3-5 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 4074) AUTHORS Fricke,W.F., Wright,M.S., Lindell,A.H., Harkins,D.M., Baker-Austin,C., Ravel,J. and Stepanauskas,R. TITLE Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate E. coli SMS-3-5 JOURNAL J. Bacteriol. (2008) In press PUBMED 18708504 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 4074) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (21-MAR-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4074) AUTHORS Fricke,W.F., Wright,M.S., Lindell,A.H., Harkins,D.M., Baker-Austin,C., Ravel,J. and Stepanauskas,R. TITLE Direct Submission JOURNAL Submitted (14-MAR-2008) J. Craig Venter Institute, 9712 Medical Center Dr, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000973. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4074 /organism="Escherichia coli SMS-3-5" /mol_type="genomic DNA" /strain="SMS-3-5" /db_xref="taxon:439855" /plasmid="pSMS35_4" gene 165..866 /gene="repB" /locus_tag="EcSMS35_C0001" /db_xref="GeneID:6106614" CDS 165..866 /gene="repB" /locus_tag="EcSMS35_C0001" /note="identified by match to protein family HMM PF01051" /codon_start=1 /transl_table=11 /product="initiator replication protein RepB" /protein_id="YP_001739883.1" /db_xref="GI:170650755" /db_xref="GeneID:6106614" /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCIGRLKSGADAESPK LQKTMTITAAEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKDDEKREEFRWIQYRA QYAKGEARAQITFSDAVMPYLTQLQGQFTRVVIKNISRLSRSYSIRIYELLQQFRSTG ERIIALDDFRSMLDIEHKYQTYKSLNQQLLRPCIDELNKKSDLAVTVETIKKGRTVVA LHFRFKEDKQIKMTI" gene complement(1114..3273) /locus_tag="EcSMS35_C0002" /db_xref="GeneID:6106617" CDS complement(1114..3273) /locus_tag="EcSMS35_C0002" /note="identified by match to protein family HMM PF03389" /codon_start=1 /transl_table=11 /product="MobA/MobL family protein" /protein_id="YP_001739884.1" /db_xref="GI:170650752" /db_xref="GeneID:6106617" /translation="MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTR KSGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPRELPQDAAR ETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNNRTH AETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETE RGEQNRLINRLNLEIQISRTELRNSGLTEPARRMADLLNIGLPDNATSYTLRDIIEAL PKDSNAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRI PLMQWAAPEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFETQWQQWGASGL AALRAQLLKREEELRRKEQEDTERRRAERRAEQLRQNDNAVMDSGVLSAVVTGYGEAP MPGNGEMTSYLLLHNRNGEYTLWGNELEKYRTRIFERVDLMRDRSGYICDRSEIGQHP PLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPEFFCLGEDRQPAMPSLAARKVD FTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNSTLYPAFAVPSADNR HLVISALTDKGLRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQP DHLFRSLGFNRTWDEWRREEDARTHATERRRDRGWSQ" gene 3452..3706 /locus_tag="EcSMS35_C0004" /db_xref="GeneID:6106616" CDS 3452..3706 /locus_tag="EcSMS35_C0004" /note="identified by similarity to SP:P07114" /codon_start=1 /transl_table=11 /product="putative mobilization protein C" /protein_id="YP_001739885.1" /db_xref="GI:170650753" /db_xref="GeneID:6106616" /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVIVGAALLAKVRK PEEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPEQ" gene complement(3675..4040) /locus_tag="EcSMS35_C0003" /db_xref="GeneID:6106615" CDS complement(3675..4040) /locus_tag="EcSMS35_C0003" /note="identified by Glimmer3; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001739886.1" /db_xref="GI:170650754" /db_xref="GeneID:6106615" /translation="MFSIGNFGTKTSIKNKILKTRSKNLTTSLWITWSAENKKPIKTM RCKKAELQVPNTPPPTLWKSSIHAGSAHITSRKTVRMCSIRRRIHFRFLAHSLANARS LGLRRADDTITVLAALPAR" ORIGIN 1 taaaggtaat atgatttaag gtgtttaggt aatatgattt aaggtaaagg caatatgatt 61 taaggtaata ttcacagaaa aagggatatt aaaataaaaa ggcattgcct ttcgttgagg 121 gtatgtttat cttttattca ttaccttttg gggagggatg ctctatgtcg gatctaattg 181 cctataaatc caatgcgctg gttgaagcca gttataaatt gaccctacag gaacagcgat 241 ttttgttact ttgcatcggt cgattgaagt ctggggctga tgcagaatct ccaaaattgc 301 aaaagacaat gaccattaca gctgcggaat atttcgattc attccctgac atggggcgga 361 aaaatgccga ggttcagtta caggaagcaa ttgatcgttt gtgggacagg tcaatcattc 421 tcaaggatga cgagaaacgt gaggagttcc gctggatcca gtatcgggca cagtacgcta 481 aaggcgaggc cagagcacaa ataacatttt ctgacgcagt aatgccttat ttgacacaac 541 tacaagggca atttactaga gttgtaatca agaatatatc tagattatca agaagttaca 601 gtataaggat atacgaactc ctccagcagt tccgcagtac tggcgaacgt attatcgctc 661 tcgatgattt tcgctcaatg cttgatatag agcataaata tcaaacatat aaatcactta 721 accagcaatt attaagaccc tgcattgacg aactgaacaa aaaaagcgac ctggctgtaa 781 cggttgagac gatcaaaaag gggcgcacgg ttgtagccct gcattttcgc ttcaaggaag 841 acaaacaaat caagatgacg atctaaaatc gattttaagg catctaaaac gcgctctggt 901 gcgttttttt tgcgtaaggt atgcgatggt gctacgaagc acaaaaacat cgtcagaatc 961 gctctcgcga gctaaaaaaa tcccccatat acggggggga agaaactatg cggagattat 1021 ctagtttgtt gtgtgtgctt cttgcattca tccctgtcga tgaacattga agaacataac 1081 atgatgtaaa acaaaacaaa atattgttca cattcactgt gaccaaccgc gatcgcgcct 1141 cctctcggtg gcgtgtgttc gtgcatcttc ctcgcgccgc cattcatccc aggtacgatt 1201 aaaacccagc gagcggaaca gatgatccgg ctgtttttct ggtgtgttga cggcagcaaa 1261 aagcggtgcc tcacgggttt tcagatgaaa ctccataagt tccggtgcag gtgatatgtg 1321 gctgtctgca tcgtgattga cggcaacacc ataccctgca taccgtaacc ccttatcggt 1381 cagcgcactg atgaccagat gcctgttatc ggctgaggga acggcaaacg cgggatacag 1441 cgtactatta agccggacaa caccgcccag agagtcatcc acgcccatga ccagcaaaag 1501 ctgaagctgg cgggtttccc ggtcgacaga actcattacc ggcatcagcg tcggtggcag 1561 acgtccctgc gtaaaatcca ccttccttgc tgccagtgat ggcatggctg gctggcggtc 1621 ttctccaaga cagaaaaact ccggccatgt cttcggctgg cggagattgc gggtatgttg 1681 tggccatgtc tggcaaacct gcgtcagcag ttgctcaaag gtcgcagagg aataaacacg 1741 ttgcagtggt ggatgttgac cgatttcgct tcggtcacag atataaccac tcctgtcacg 1801 cattaaatca acacgctcaa agattctggt tcggtatttc tccagttcgt tcccccagag 1861 cgtatattct ccgttccggt tgtgaagcag aaggtaactg gtcatttccc cgttaccagg 1921 catgggggcc tcgccatacc ccgttacgac cgcactcagt acccctgaat ccatgacggc 1981 attgtcattt tgcctgagct gctcagcccg tcgctccgcg cgacgacgtt ctgtgtcctc 2041 ctgctccttc cggcgcaatt cctcttcacg tttaagcaac tgggctctga gagctgcaag 2101 gccggatgcg ccccactgct gccactgtgt ttcaaatgcc gtctgactcg cgggaatgtc 2161 ctgtttctcc accttccggt aatgctgtcg caatttttcc atttgctggc tcagagactg 2221 gatttttccc tgctcactgc ggtattccgg tgccgcccat tgcatcaggg gaatacggga 2281 aaaaccggac gaaaacggcg atgatttttt caggctggct gcatggctca tagcttcctt 2341 ccgttcggtg ttcagctctt cccagcgtct gcgcgtcgcc tgcatatctg ccatcatcga 2401 catggcatta ctggtgagtt tccatgccgc gttactgtcc ttcggcaacg cttcgatgat 2461 gtcacgtagt gtgtacgaag ttgcgttgtc aggaagcccg atattcagaa ggtcagccat 2521 acggcgggca ggctctgtca gcccgctgtt tctgagttcg gtacgggaaa tctgtatttc 2581 caggttaagt ctgttaatca gacgattctg ttcgccgcgt tctgtttcga taccgcgtgt 2641 ttccatcgca caggcagact ttccgaggtg aataccaggc gttttctcaa gcccctgtcg 2701 ctcgtatgaa cgatggtcta tctcttcctg ataaccggcg ttcgccagtg ccctgttcgc 2761 atggtcagcc catgatgcac gccacgtctc ggcatgtgtc cggttgttcc agtccctgac 2821 ctttccaccg aatccagcag gtccgacagc tctcgtggtc agcatgatgt gcgcatgggg 2881 atttgtttta tccatgtgat ggaacgccac atcagcaatc atgccctgac tgacaaagtt 2941 ttctctgaca aaggcgagaa cggtttcccg tgcggcatcc tgcggtagtt cgcgggggat 3001 ggcgagttca atttcccgcg caagttgtga gttcttccgg cgttcggcct tctcaacggc 3061 attccagagt tcggcacggt tcgtacacca ggcaggggct gtcgcgggag tcagaatcac 3121 agcttcagcc acaccgcttt tgcgggtgta gtcgtgagtc agtccggtac gctcatcaag 3181 catcagtgaa ccggaacgat aggcagcaga agcaacggcg ctgtagccgc tgtttctgga 3241 gatgattttc atgctgagat gataaatcgc catttctgcc gtaatgcctt tttgtggttt 3301 tctttcagcc ccgcagggcg cacacaatcg aaacggagtg gagattgtat aagtgcgcac 3361 ttcgtgattt tccgtgcatt atgccagctc agtttttaaa ctaccagtga cgcgctaaaa 3421 tgcgattttt catcgcgcac ggagttacat catgagcaga acactcgaac agaagattgc 3481 tgatgctgag gccagattac agcgcctgaa ggcgaagagc aggagtctgg acacagcgca 3541 gaaggtcatt gtgggtgcag cattgctggc aaaggtcaga aagccggagg aggtgcagtt 3601 gcgtgcctgg ttactccagt tcctgaaggc agaggtgaca cgacaggctg atgtgacgcg 3661 catactgccg ctgattaacg agctggaagc gctgccagaa cagtgattgt atcgtccgct 3721 cgccgcagtc ccagcgaccg agcgttagcg agcgagtggg cgaggaagcg gaagtgaatc 3781 cgtcgcctga ttgagcacat acgcacggtt tttcgggagg tgatatgcgc tgaacccgca 3841 tgaatactgg atttccacag ggttggaggg ggtgtattcg gaacttgcaa ttctgctttt 3901 ttgcaacgca ttgtttttat tggttttttg ttttcagcac tccaagttat ccacaggctc 3961 gtcgttaagt ttttagatct tgtttttaag atcttgtttt taatacttgt tttagtgcca 4021 aaattcccta tagaaaacaa aatgttacaa cgctataggt aatatgattt aagg //