LOCUS NC_010331 3936 bp DNA circular BCT 12-FEB-2008 DEFINITION Francisella philomiragia subsp. philomiragia ATCC 25017 plasmid pFPHI01, complete sequence. ACCESSION NC_010331 VERSION NC_010331.1 GI:167626220 DBLINK Project:27853 KEYWORDS . SOURCE Francisella philomiragia subsp. philomiragia ATCC 25017 ORGANISM Francisella philomiragia subsp. philomiragia ATCC 25017 Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella. REFERENCE 1 (bases 1 to 3936) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of plasmid of Francisella philomiragia subsp. philomiragia ATCC 25017 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3936) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-FEB-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3936) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (11-DEC-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000938. URL -- http://www.jgi.doe.gov JGI Project ID: 2773039 Bacteria available from ATCC: ATCC 25017 Contacts: Patrick Chain (chain2@llnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3936 /organism="Francisella philomiragia subsp. philomiragia ATCC 25017" /mol_type="genomic DNA" /strain="ATCC 25017" /db_xref="ATCC:25017" /db_xref="taxon:484022" /plasmid="pFPHI01" gene join(3817..3936,1..822) /locus_tag="Fphi_0001" /db_xref="GeneID:5907059" CDS join(3817..3936,1..822) /locus_tag="Fphi_0001" /note="KEGG: cvi:CV_2292 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001672023.1" /db_xref="GI:167626221" /db_xref="GeneID:5907059" /translation="MASFYEYIQHVIDSNKFLEEKNLDKKKLNLKDLSGGVNKKFDPS MGRVITMKNNARSDYEKEDRVKKVLEENDYTPSFLKSLDKPYYYYFISFQNSLDDSDD VEELYGRERVDFRRVSIYENMNPSGYLYIDQRQQLFSCIHQLMFIHFILFVNRIKHGD MHMKNIKWIKFHKNNKDFYSVKAFDFGHAEVNCGGIIGSRYTDINYLFKLKSQKKSLV GFFEGRSRFNDYISGENQNRMEKHFPLHHLLTNHQVPNLRKIHKNIAIDFLNREGDRL ERNLREIKDKNITNEYSCNLVLKEFAASSERVVGILR" gene 1458..2378 /locus_tag="Fphi_0002" /db_xref="GeneID:5907061" CDS 1458..2378 /locus_tag="Fphi_0002" /note="KEGG: ssn:SSON_PC01 Rep" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001672024.1" /db_xref="GI:167626222" /db_xref="GeneID:5907061" /translation="MKNNNSILAQKQHITQLKNNQTRIQRLFSFNTKIQNNICDCGRY IQLNKKRNYDTAEIKKEVEQAYTCKYRYCPLCNYYRICSVSPQMVKALEDQQNKGNKI LFLTLTVPNCDYSETRKTISNMNRAYKRLTEQNLFKNIEAWIRTTEVTFNTKGEAHPH FHIALAVNENYFKKGNYKTTREWSKIWSKAYKSDKQLIVDIRKSYKSKKHSKRDLDIH STVKELAKYCIKSTDLQRIKTPENMEIIFNQLKGLRFIATSQNIKLSEDKKDELNSNE WELIESIILKYYPDMKQYLHHRTVSKNETV" gene 2365..2646 /locus_tag="Fphi_0004" /db_xref="GeneID:5907060" CDS 2365..2646 /locus_tag="Fphi_0004" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001672025.1" /db_xref="GI:167626224" /db_xref="GeneID:5907060" /translation="MKQFDLFGGFSKPTKSKTKTGNQGRPKKITPGVVFETKKLLSSK KKISNDEIMQKLNLTKSIFYRIKKGYYDDLFKRFLETNIQNFSLTQEEN" gene complement(3155..3415) /locus_tag="Fphi_0003" /db_xref="GeneID:5907058" CDS complement(3155..3415) /locus_tag="Fphi_0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001672026.1" /db_xref="GI:167626223" /db_xref="GeneID:5907058" /translation="MDNLAFKIQLGVILPKLDEKISKSTLEIFDELVGFVQSGEVEGQ DINVEEIKEILVKDFEIFLDKKIIPKSQKLKKEEASEEIEEA" ORIGIN 1 tttgatccaa gtatgggacg tgttattaca atgaaaaata acgcaagaag tgattatgaa 61 aaagaagata gagtgaaaaa agttttagaa gaaaatgatt atactccttc attcttaaaa 121 tcattagaca aaccatatta ttattatttt atatcattcc aaaatagttt agatgatagt 181 gatgatgttg aagaattata cggtcgcgaa agagttgatt ttcgtagagt tagtatttac 241 gaaaatatga atccatccgg atatttatat atagatcaaa ggcaacaatt attttcctgt 301 attcatcagt taatgtttat tcattttatt ttattcgtaa atagaataaa gcatggagat 361 atgcatatga aaaatattaa atggattaaa tttcacaaaa ataataaaga tttttattct 421 gttaaggctt ttgattttgg gcatgctgag gtgaattgtg gtgggattat aggttcacgt 481 tatactgata ttaattattt atttaaattg aaatctcaaa aaaaatctct cgtaggattt 541 tttgagggca gatcaagatt taatgactat ataagtggtg aaaatcaaaa tagaatggaa 601 aagcactttc cattacatca tttgttaacc aatcaccaag taccaaattt aagaaaaatt 661 cataaaaata ttgctattga ttttttaaat cgagaaggtg atcgattgga gagaaattta 721 agagaaatta aagacaaaaa tattactaat gaatattcat gtaatttagt tctcaaagaa 781 ttcgcagcat catctgaaag agtagttggt atacttagat gaaattttat tctggattgc 841 ttatagaggt tttaaggcga tttaagagcc atttttgatt ttaacgtgaa aaactatatc 901 gaagcttaaa atcgcttaaa atcgctttct atgtttccag aatgcgacaa tttgaagtgg 961 ctagccgtct gcaagactat tagccttgat gatttttaaa atgtccaaaa atgataatac 1021 aatcataaca taatcatttt tttgttttct gttttatttt gttttctttc tcagtttctt 1081 ttttgtcttt tgctatgact tgctttagtc tttctttttg agattttttc cttttgagaa 1141 agttaaacat ttttctgttc ttctgagttg aatgtctaat ttttccacct tttttcttaa 1201 agctcaatat gcattgactg cgtcaaagta aaattgagtt gttttcacag ttagtaaaaa 1261 tcgctaatcg ctggatttta acccctgcaa aaatgaaaaa atgaagcttg agaagatcgc 1321 caaaaaaggc gaagccgttt tggtctttac ttgatacaaa gtatattgga aacaagtgca 1381 gattttatga ttgaatagat acaaaaaaag tcctatactt ttaagcgacc aaactaaaaa 1441 atacaggact aattttaatg aaaaataata attcaatttt ggcacaaaag caacacataa 1501 cccaattgaa aaataatcaa actcgcatac aacgattatt ttctttcaac acaaaaatac 1561 aaaataacat ttgtgattgt ggtcgctata ttcagctaaa caaaaaaaga aattacgata 1621 cagcagaaat taaaaaggaa gttgaacaag cttatacatg caaatatcgt tattgtccgt 1681 tgtgtaatta ttaccgtatt tgttctgtgt ctcctcaaat ggttaaagca cttgaagacc 1741 aacaaaacaa aggaaataag atattgtttc taaccttaac tgttccaaat tgcgattatt 1801 cagaaactag aaaaactatc tcgaatatga atagggcata taagagattg actgaacaaa 1861 atttatttaa aaatattgaa gcttggatac gaactacaga agtaacattt aacacaaaag 1921 gcgaagcaca cccacatttt cacattgccc tagcagttaa tgaaaactac ttcaaaaaag 1981 gtaattacaa gactactaga gagtggtcta aaatatggtc aaaagcttac aagagcgata 2041 agcaattaat cgtagatatc cgaaaatcat acaagagtaa aaagcactca aagagagatt 2101 tagacattca ttcaactgtt aaagagttgg ctaaatactg cataaaatca accgacttgc 2161 agagaattaa aacccctgaa aatatggaga ttatattcaa tcaattaaag ggtttgaggt 2221 ttattgccac tagtcaaaac atcaaactat cagaagataa aaaagatgag ttaaattcta 2281 atgaatggga actaattgag tcaattattt tgaagtacta cccagacatg aaacaatatt 2341 tacatcatag aacggtatca aaaaatgaaa cagtttgatt tgtttggggg attttctaaa 2401 cctacaaaat caaaaactaa aactggtaat caagggcgac caaaaaagat aacgcctgga 2461 gttgtttttg aaactaaaaa acttttgagt tccaaaaaga aaatctcaaa tgatgaaatt 2521 atgcaaaaac ttaatctaac aaaatcaatt ttttatcgaa tcaagaaagg ttattatgat 2581 gaccttttta aaagattttt agaaacgaac attcaaaact tttcacttac tcaagaagag 2641 aattagataa gatatatttt tttatttttt ttgctcatac cctttttgaa aaagtaaaat 2701 ttatcttttg tattgctttt gtatcaagct ttttagtgtt cgacgctatt cgctctttaa 2761 acaagcatct tgaagcatct tttagatttt tctaaaggct cattatccat tgaaaaaatt 2821 tcaatggtaa ttcgtagaaa atagacacgc tataaactca aattttgagt ttatagcgtg 2881 cccttttatc cctgtcaatt tgcataattt ttgagcatag tgacagggtg ataaaactag 2941 tgatgattaa ttgtactcaa aggggattac tagaatgtta aaaagtgata agccgtttta 3001 aggcgattta agagccattt ttgattttaa cgtgaaaaac tatatcgaag cttaaaatcg 3061 cttaaaatcg cttttaaatc atctagaatg agctgttttg atgctgttat tgatttaaaa 3121 gattatattt cttgatattt ttgattttga tattttatgc ttcctctatt tcttcagatg 3181 cttcctcttt ctttagtttt tgagactttg gtattatttt tttatcaaga aatatttcaa 3241 aatcttttac tagaatttct tttatttctt ctacatttat gtcttgacct tctacttctc 3301 cggattgaac aaaacctaca agttcatcaa aaatctctaa agttgatttt gatatttttt 3361 cgtctaattt tggaagtatt acacctaatt ggattttaaa agctaagttg tccattttaa 3421 tctatattgt ttttttttga ttttgatatt ttctcataaa agttttgtga ttaaaaaaat 3481 atttacactt tccagaatgc gacaatttga agtggctagc cgtctgcaag actattagcc 3541 ttgatgattt ttaaaatatt aaaaaataat aatgcagtca taacagatta ttgaaggcaa 3601 taaaaataac tgccctttat tagcctttga aagaatttga acctttgata atgctaaatt 3661 gcgaatagcg ttaaggggtg tgctttcttt gagtgttatt tttagaacta aagtgaatta 3721 gaaaggaaag cacaataaaa tcatagcata attatttttt tgttttatac gtttaggttt 3781 attgttacaa tgtttttttt ggcaattttt taatatatgg caagttttta cgaatatatt 3841 cagcatgtta tagattctaa taaattttta gaagaaaaga atcttgataa aaaaaaatta 3901 aatcttaaag atttatccgg tggggttaat aaaaaa //