LOCUS NC_009789 6199 bp DNA circular BCT 06-JAN-2010 DEFINITION Escherichia coli E24377A plasmid pETEC_6, complete sequence. ACCESSION NC_009789 VERSION NC_009789.1 GI:157149498 DBLINK Project:13960 KEYWORDS . SOURCE Escherichia coli E24377A ORGANISM Escherichia coli E24377A Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 6199) AUTHORS Rasko,D.A., Rosovitz,M.J., Myers,G.S., Mongodin,E.F., Fricke,W.F., Gajer,P., Crabtree,J., Sebaihia,M., Thomson,N.R., Chaudhuri,R., Henderson,I.R., Sperandio,V. and Ravel,J. TITLE The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates JOURNAL J. Bacteriol. 190 (20), 6881-6893 (2008) PUBMED 18676672 REFERENCE 2 (bases 1 to 6199) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-SEP-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6199) AUTHORS Rasko,D.A., Rosovitz,M.J., Brinkley,C., Myers,G.S.A., Seshadri,R., Cer,R.Z., Jiang,L. and Ravel,J. TITLE Direct Submission JOURNAL Submitted (13-AUG-2007) The Institute for Genomic Research, 9712 Medical Center Dr., Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000798. Source DNA and bacteria available from Jacques Ravel (jravel@tigr.org). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6199 /organism="Escherichia coli E24377A" /mol_type="genomic DNA" /strain="E24377A" /db_xref="taxon:331111" /plasmid="pETEC_6" gene complement(665..781) /locus_tag="EcE24377A_B0001" /db_xref="GeneID:5585816" CDS complement(665..781) /locus_tag="EcE24377A_B0001" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001451539.1" /db_xref="GI:157149501" /db_xref="GeneID:5585816" /translation="MLPRLRKSVKCFMWQEKKGSTGASAEYAIQEIFRFLAH" gene 877..1026 /locus_tag="EcE24377A_B0002" /db_xref="GeneID:5585815" CDS 877..1026 /locus_tag="EcE24377A_B0002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001451540.1" /db_xref="GI:157149500" /db_xref="GeneID:5585815" /translation="MPSEYDEQLDSTDTQLPGEYDLFDLMAQVTEENLHAPVDFGSPV GREAL" gene complement(3372..3974) /locus_tag="EcE24377A_B0003" /db_xref="GeneID:5585813" CDS complement(3372..3974) /locus_tag="EcE24377A_B0003" /note="identified by match to protein family HMM PF04655" /codon_start=1 /transl_table=11 /product="streptomycin resistance protein, StrB" /protein_id="YP_001451541.1" /db_xref="GI:157149503" /db_xref="GeneID:5585813" /translation="MLEYAGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSA LLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNASELRGLHGDLHHENIMF SSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRR LLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY" gene complement(4208..5011) /locus_tag="EcE24377A_B0004" /db_xref="GeneID:5585814" CDS complement(4208..5011) /locus_tag="EcE24377A_B0004" /note="identified by similarity to SP:P18150; match to protein family HMM PF01636" /codon_start=1 /transl_table=11 /product="streptomycin resistance protein, StrA" /protein_id="YP_001451542.1" /db_xref="GI:157149502" /db_xref="GeneID:5585814" /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG" gene complement(5072..5887) /gene="folP2" /locus_tag="EcE24377A_B0005" /db_xref="GeneID:5585812" CDS complement(5072..5887) /gene="folP2" /locus_tag="EcE24377A_B0005" /EC_number="2.5.1.15" /note="sulfonamide resistance mechanism; identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase" /protein_id="YP_001451543.1" /db_xref="GI:157149499" /db_xref="GeneID:5585812" /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR" ORIGIN 1 tgaatcgtaa tctcttgctc tgtaaacgaa aaaaccgcct ggggaggcgg tttgttcgaa 61 ggttaagtca gttggggaac tgcttaaccc ggtaacaggg ttcacgagac cgccattacc 121 aaaactgttc tttcagtgta gccgcagtca ggcctctact tcaagacctc ttaatctatc 181 ttctcgtgca ctcctgttac taatggctgc tgccagtggc gttttgtcgt gtctttccgg 241 gttggactca agttgatagt taccggacaa ggcgcagcgg tcggactgaa cggggggttc 301 gtgcatacag tccagcttgg agcgaactgc cttcacggaa ctgagtgtca ggcgtggaat 361 gagaaaccgc ggccataaca gcggaatgac accggtaaac cgaaaggcag gaacaggaga 421 gcgcacgagg gagctaccag ggggaaacgc ctgggatctt tatagtcctg tcgggtttcg 481 ccaccactga tttgagcgtc agattttgcg atgcttgtca ggggggcgga gcctatggaa 541 aaacggcttc gccgtggcct tatctcttct ttgctaagtg tcttcctggt atcttccagg 601 aaatttccgt ccccgtccgt aagccggtac cgctcgccgc agccgaacga ccgagcgtag 661 cgagtcagtg agcgaggaag cggaatatct cctgtatcgc atattctgct gacgcgccgg 721 tgctgccttt tttctcctgc cacatgaagc acttcactga ttttcgcaat cgtggcaaca 781 tagtaagcca gtatacactc cgctagcgct acatgactgg ttcagggctg cgccccgaaa 841 cccgctaaca acctctcagc tactggatat caccccatgc catctgaata tgatgaacaa 901 ctggattcga ctgatacgca gcttcccggc gaatatgacc tttttgattt aatggcgcag 961 gttactgaag agaacctgca tgcccctgtg gattttgggt cgcctgtcgg ccgggaagcg 1021 ttatagcttt ttcgcttgcc cgcgtacgtg gtaatactcc ggtattacct tttatttctt 1081 tattttcatg taattacagt ggatttttaa tacccgggta ttactcgtga aaacgaaata 1141 ttcctttttt tcttttaatt catgcagttg cgatgaaaat cgcggctgcg ttaggtgtat 1201 gaccattttg aggttgaaaa ataatcaacc atggcgggtg atttacgcag gttaagggga 1261 gatcgtgaca aaaaaagcgt tcctcactgt atcgttcatg cctgcatgaa cgggttattc 1321 ttcctgacta cagaattaca tcgctccttc agttcataca tcacttttac atcacttata 1381 catcactttt acatcattcc ttcagctcat acgtcacttt catcctctgt gccatttgta 1441 catcaccccc ttcctgaacg tgctgacagc gggttttccg gctgcgccgg caacgcttca 1501 cggccacgca ataaattgcg tccccgttca ccgttttcgg atgggaagaa cgccggaaac 1561 aggacttacc ccggctgaat ggtgtgaatt tccgcgctat gcacttgtgc gcatactcat 1621 gcatgccgta aaaacagagc ctgcgcgttt ctggcgggtt ttcgggtggt ttgttgcctg 1681 ttttaccggt ttcccgtcag aaacgccctg agggcctctc aggcggtgct gataacagat 1741 gttatggtaa atcagagtca cctgcactgt tactctgaac cggagcgaaa cagccgcgac 1801 cagaatcccc gctttttttc ctgtgccagc gcgtcagcca gacggctaat ttcggcctgt 1861 agttgttccc tctcctcatt tcgcaggcgg ttttctgctt cccgcgccat cttgtcttca 1921 agcattaggg taacagtctg ctgcagagcg tccagtttct gctgaatgac gtctagctga 1981 gcattttccg cctggctaac gacagatttg gagtgtccct ccttgtgcct ttttggtgtc 2041 tcagaagtgc gcagctcgcc ataggcccga atcagttcac tggtctcgaa ctcccggcga 2101 tcattttttc ctgtgcgata gctgacaagg cctttagcca tgtcacgata taattgcgag 2161 cgcgactttc ctgttaattt cagtgtctct tgaactgtgt gccatgccat aaaagtgaca 2221 gtgtctcctg tgtgtaccgt attgtaacag cagaacatat tactgtttta acacaaaagg 2281 tctgaggctg cccgtgaggc gtgaaaaata cacaaaaaac ctgttgacgg tgtggttttg 2341 acgggcgtag tatttcgaat actgtatata aacacattgt tataaataca gtttttgctg 2401 tttttaaaag tcaaagagga taattttatg agtacagagt taaatagcgg tactgtcggt 2461 ggttttggtc acatgggacc aaatgacccc tacaatgatg gtcatagcgg ctctggaagt 2521 tcgggaggta gttttaacgg tggtggtaat ggtggccatg ataatagtag tggttcatct 2581 tatactgcat cctttggtct catcactggc cgacacccga taactgtccc aggtacgaag 2641 aatattaatt ctgtcgatct ttctgctgtc attaataaca ttatacatca tgaaggtgca 2701 cgcaataaca tgtacctaga tactgcgaac aatgtaagag tgggagtgac gggcactggc 2761 tggcaatgtc tagcaacggc aggcatttcg gctgagggta aaagaacttt ccgctaagcg 2821 atagactgta tgtaaacaca gtattgcaag gacgcggaac atgcctcatg tggcggccag 2881 gacggccagc cgggatcggg atactggtcg ttaccagagc caccgacccg agcaaaccct 2941 tctctatcag atcgttgacg agtattaccc ggcattcgct gcgcttatgg cagagcaggg 3001 aaaggaattg ccgggctatg tgcaacggga atttgaagaa tttctccaat gcgggcggct 3061 ggagcatggc tttctacggg ttcgctgcga gtcttgccac gccgagcacc tggtcgcttt 3121 cagctgtaag cgtcgcggtt tctgcccgag ctgtggggcg cggcggatgg ccgaaagtgc 3181 cgccttgctg gttgatgaag tactgcctga acaacccatg cgtcagtggg tgttgagctt 3241 cccgtttcag ctgcgtttcc tgtttggggt cgtttgcggg aaggggcgga atcctacgct 3301 aaggctttgg ccagcgatat tctccggtga gattgatgtg ttcccagggg ataggagaag 3361 tcgcttgata tctagtatga cgtctgtcgc acctgcttga tcgcggccgc gatagctaga 3421 tcgcgttgct cctcttctcc atccgcgttc caagctgcgg aaaggcaccc ataagcgtac 3481 gcctggtcga gcaggcgacg cggatcgacg tccagcgcac gagagaatgc gtccgccatc 3541 tgtgcaatgc gtctaggatc gagacaaagg tcgtctctgt cagccggatc gtagaacata 3601 ttggcggcgc caaagcccac ttcaccgacc agaccgacgg gatctatcac cagccagccg 3661 cgactggaga acatgatgtt ttcatgatgc agatcgccat gtagcccacg cagttccgag 3721 gcattgctca tcatttgatc ggctataatc gccgcgtgga cgtagtcagt ttgacaacct 3781 gcgttttgat catcgcgcgc ccgctgaaac aaagctgcaa agcgatcccg gatcgggaga 3841 agggcagaag gcaggggttc ctcagatgcg gcatacagct tcgccattag ttccgctgca 3901 atttcggtcg cctggtagtc gccgtgctcg gcaacgatgt gagagagcat tcgctccccg 3961 gcatattcga gcaacatcag attgttctca cgaccgagca accggactgc tcccctccca 4021 ttgcgccata ccagatagtc ggccccgcgc agttcatcag caatgtcttc tataggtttc 4081 aatcccttga cgattgcagg agtcccgtct ggcaatgaaa ctttccaaac gaggctggaa 4141 aaggtgtccg caatgagaac aggttgcgaa acgtgccaat gagcaggaaa aacaggcggc 4201 atgaacatca accccaagtc agagggtcca atcgcagata gaaggcaagg cgttcgcggt 4261 cgggggcttc gatccccaat acattgaata ggacagcgaa ggcgcgctct gcttcatctg 4321 gcgctgccca gttctcttcg gcgttagcaa tcatgagtgc caaatcggca tagcgatctg 4381 ctgttccgag ccgcccaagg tcgatcagac ccgtgcattg aagagtttta gggtccacca 4441 tgaagttcgg catgcaggga tcaccatggc aaacaaccat atcggtgcgc tcttggtcga 4501 gccgcaccgg tagctctcgt tcgacacgag ccaaaagatc gagctgcggc gtactcttgt 4561 cctcgtccgg taagaagtcg ggattgacgg cattgcggga caccacatca acggcgcgtc 4621 cgaacattcg cgacagcctg cgctcaaacg gacattgatc aaccgatagg ctgtgaacag 4681 cgccaagttg ctgccccatt gacggccacg ctttgagcaa atccgctcca gacagatcag 4741 ccgccggtac tcccggaatt gccgttatca ccaagcatgc accctcctgt tcctcctgcc 4801 agttgatgac ctcggggcaa gccacacctc gacctttgag ccaaatgagg cggtcacgct 4861 ctccagcgag ctcaccgcgg cgggaagcag gtgcgatttt cgcgaaggca tgcccgtcac 4921 cacgtcgaaa aacaaaatca ccagattctc cgcctctgac aggcaaccag tcagaatgcg 4981 attcaccaaa aaaaatatta gttcgattca atggaggttc cttcagtttt ctgatgaagc 5041 gcgaatatag agaaatatcc cgaatgtgca gttaacgaat tcttgcggtt tctttcagcg 5101 ccgccaatac cgccagcccg tcgcgcaagg ggcgcggctc gtgtgtgcgg atgaagtcag 5161 ctccacctgc ggcggcggca agctctgcag cgagtgtcgc ggccccgaca tcccccggac 5221 cacggcctgt gagcgcgcgc agaaaggatt tgcgcgaaac agacagaagc accggcaaat 5281 cgaagcgcag ccgcaattca tcgaaccgcg ccagcaccga gagcgaggtt tcgggagcag 5341 cccccagaaa aaaccccatg ccgggatcaa ggacaaggcg gttgcgtttg ataccggcac 5401 ccgtcagcgc cgcgatgcgc gcgtcaaaga acgccgcaat gtgatccatg atgtcgccag 5461 cgggtgcctc gcgccgatct gcctgcccgt cttgcaccga atgcataacg acgagtttgg 5521 cagatgattt cgccaattgc ggatagaacg cagcgtctgg aaaaccgcga atatcattga 5581 gataggccac accacgcgac aaggcatagg cttgcgtcgc gggttgataa ctgtcgagcg 5641 agacgggaat gccatctgcc ttgagcgcgt ccagcaccgg cgcgatacgc gcgatttctg 5701 tgtcggacga aacaggcgcg gcgtcgggat tgctggatgc cggaccgagg tcgatcacat 5761 ctgccccctc ggccatcagc ttacgcgcct gcgcaatggc tgcgtctggc gccagatacc 5821 ggcctccatc ggagaaactg tccgaggtta tgttgacgat gccgaaaatg atgagcgatt 5881 tattcatggg ggcttctata ataataataa tcgagcatga gtctcatacg gatgctcggg 5941 tcgaaaggga atccccaggc gagtaacctg tttgcggtga tccgtttcat gatgatgtat 6001 ctgtagcatt ttggaaataa atatatcatc tctcaataag tagatatatt tatctttttt 6061 gcttctttgg tgctgcaagt caccaatacg agggaaacct gttacggagc ggtttaaccg 6121 taatcaacag tgactggtgt catgttcgga agattaattg atagtaatct acaaaggatc 6181 ttcttgagat ccttttcaa //