LOCUS NC_009473 5629 bp DNA circular BCT 24-MAY-2007 DEFINITION Acidiphilium cryptum JF-5 plasmid pACRY07, complete sequence. ACCESSION NC_009473 VERSION NC_009473.1 GI:148244127 DBLINK Project:15753 KEYWORDS . SOURCE Acidiphilium cryptum JF-5 ORGANISM Acidiphilium cryptum JF-5 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium. REFERENCE 1 (bases 1 to 5629) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of plasmid7 pACRY07 of Acidiphilium cryptum JF-5 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5629) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5629) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (04-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000695. URL -- http://www.jgi.doe.gov JGI Project ID: 4000181 Source DNA and bacteria available from Timothy Magnuson (magntimo@isu.edu) Contacts: Timothy Magnuson (magntimo@isu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5629 /organism="Acidiphilium cryptum JF-5" /mol_type="genomic DNA" /strain="JF-5" /db_xref="taxon:349163" /plasmid="pACRY07" gene complement(897..1094) /locus_tag="Acry_3628" /db_xref="GeneID:5159434" CDS complement(897..1094) /locus_tag="Acry_3628" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001220362.1" /db_xref="GI:148244128" /db_xref="GeneID:5159434" /translation="MITTSYDPEADALYVRFAPKGATIAETRELEPGILLDMDEIGHL VGIEVLGVRSRATLPAIPYAA" gene complement(2806..3369) /locus_tag="Acry_3629" /db_xref="GeneID:5159436" CDS complement(2806..3369) /locus_tag="Acry_3629" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001220363.1" /db_xref="GI:148244129" /db_xref="GeneID:5159436" /translation="MATGNPIVDALDALAAEVAKCTESVKAANPDALTRSVDQAATKA VSSIKTALDGASEAVKEIQKAASDTAQAASSAVEQVAEVRTATRWLNLRSVAVLALAV VLVVSGSLASIWWERHKFHRLHTKVIALRAEVQTERANLKALKAKGARVKWETCGGHL CFEASSDQHSGWVTTKGNIKLVIPRGY" gene complement(3371..4456) /locus_tag="Acry_3630" /db_xref="GeneID:5159435" CDS complement(3371..4456) /locus_tag="Acry_3630" /note="PFAM: MobA/MobL protein" /codon_start=1 /transl_table=11 /product="MobA/MobL protein" /protein_id="YP_001220364.1" /db_xref="GI:148244130" /db_xref="InterPro:IPR005053" /db_xref="GeneID:5159435" /translation="MAIYRCEIKNISRGQGRSCVAAAAYRHRTRLHDQRQELDHAYTH KGDVELSEIVAPEAAPEWVHDRERLWNAADAAEKRKDARTAKEVLVALPRELNTAEQA SLVREFARAEFASKGLVADIAIHAPKAQDGETQPHAHIMLTTRPLENGNFAKGKDYSL DKPPGIEAIRERWATHCNRALERVRSPERVDHRSLADQRQAALAAAENPAQPEPDRIR AAARAMELDRAPEPKIGPVAMQMARQGRGTRAYALRDAMQVRQDRGMLRTMSRSWEQV RQAGSNLMQTMRERLPGLASVLRQALPLPSALIAATTSPDMQRATQMLDMRAAEKILK TREHENQQRQQQRTPDQGRERGRGIEM" gene 4650..4973 /locus_tag="Acry_3631" /db_xref="GeneID:5159437" CDS 4650..4973 /locus_tag="Acry_3631" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001220365.1" /db_xref="GI:148244131" /db_xref="GeneID:5159437" /translation="MAKRTDDEILADLTAKQREIETRINAVKARSKERARKEETRRKV LVGAVILAEAERSEAAKQRLQALLDKHLVRPIDREVFGLPPRPDQSGQAATSSDSTAR PDDAD" gene 5065..5613 /locus_tag="Acry_3632" /db_xref="GeneID:5159433" CDS 5065..5613 /locus_tag="Acry_3632" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001220366.1" /db_xref="GI:148244132" /db_xref="GeneID:5159433" /translation="MAKNSRDGNRERAARRRAALAERGIRPIQVLAPDAAHPLIRQAA ALMTRDDAPLEPRAALRRAGGANEPEPGEASPGLAAELEAAKARITEIERQAEAQRVM ADDAAERQRRALEVEQEKARASAEEAQKAARSAQVAEGRAAEALRRAEKAEATIRQAK ALPGLKGRLVRLLAGEVLKWPD" ORIGIN 1 taatagggtt ccaattcttc agctttttgc tgatgctcca agttaaggcg aagtgtgatc 61 gaccaaggtt cggtcatatg gtcgtaggcg aggattccta cgggtttcgc ggaaaagcca 121 tccgccatcg aaattttttt ctggaggtca acatgcatca gcatgtttta aatccagcga 181 tggtgcgtag tttggctgaa ttgatatacg caatcgctgt attgttgaaa gccgtatggc 241 caaaagggtt taattaacaa taacttctgg gtcatgaaac aattttatca tggcccagtt 301 tttttattga tattagatat ttctattggc aattcgattt ctaggtctga attataatgg 361 aaagagggga atttataatt tttgctaaat tttattatat cattgtcaat aatttttgat 421 ccgctacttt tgtatatttt tactttttcg gcatgaccga gattgtttat ttctaatgaa 481 ataattggtg atatcttttt aatatgatat ttttcaaaat catttataat atctgattta 541 taaatagact tcttaaatga tgacatccaa attttttcgt aacttaaagc ggaattttta 601 ttccaaactt tatgccgacc gatcgacata atattatatc ctacaaatat aacaataata 661 gaaaacataa taataattgc cgtataccaa agcactggat aaagataata aaataaaata 721 gataaagcta aagccggaat ccatcctatt ataattccta ttaaaaatcc aaataaatgt 781 atagataata cgtatgttga aatgaatatt aaaattgaaa ttataaatag taataaatct 841 aacatcatat tattcgaaaa gagattttct tgaaaaatct atgatgccga atattttcat 901 gccgcatatg gaattgccgg tagtgttgcc cgtgatcgca cacccagcac ttcgatcccg 961 actaggtgtc cgatctcgtc catatccagc aggatgccag gctccagttc cctggtctcg 1021 gcaatcgtcg ctcccttagg ggcgaaccgg acatagagcg catccgcctc gggatcatag 1081 ctggtcgtga tcacggtctg gctcctcgat caaaactctc tacgatcctg tgcgccgtgc 1141 cagatgcgaa ggacttcagc gttctggccg acaattcgat aaacgataat gtagggccaa 1201 atcacggtca gttccctcgt ccctgaaacc aagccgggcc gcccacgctc aggtagatac 1261 tcaagccgat cacaggccgc tacgagctgc accgcgatgc gagtggctgc ggcagggttt 1321 tcccggccga tgtggtggcg aatatggaca agatcattga tagcctcagc cgtgaagatt 1381 accggcattt aggttcggac agctcgtttt cagttcccca ggaaagcagc catttccgag 1441 cttcctcgta gggtacggtg cgcccggagt ccgcagccgc aatccctttt ttgacggctt 1501 caacgaaagc ttccgtatca ggatcatctg gcatggatac agggttcggg atcattcagc 1561 ggactcctct tggtggaggt gagtactacg cgctggcaag tcatgttcta gtccatcaaa 1621 tggtggttga gatggcggag gctcgccatt accagacggg agttggcgtt cacctggtag 1681 caatgttgga atttgcctta gaggatcttg gctgatctct tcctgttcgt cggaacgagc 1741 caaaacttcg gctgagaacc tagcgtagcg gagcttgtcg cgctcttgcg tccaagcaac 1801 tcggctattg atgactatgg cattggcggc acctttgccg cctatctgaa taacctcaat 1861 ccaacgttcg ctacggagat cagcgattgc ccgacgaacg gttgcgaccg acatcccgct 1921 aatcgaggct agggtcgccc acgacgccac cacagcatca ctatgaccca tttgagcaac 1981 gagatagtgc atcaatgcgg ctgctcgagg tttgctgacg gaaagccgcc cccaagcttc 2041 atgggaagct cgatcggtct gaatccatct tggaggggag ttggcgttct gagtgagcaa 2101 ccccctgctc atatgtgcac cattcgtttg cactggagta ttcatatgaa tcactcgtga 2161 tcgatacggg tgattcatat atgatcacat ctgatccata caaatcaacc ctgctcacct 2221 aagtgagcag ggggctgctc acttaggtga gcagcccccc ctttgtaaca tattgattta 2281 attggaaatt ttttcgcccc ctctctatga tcttaggact ggggctcccc ctcatttttg 2341 tcgtcccggt agtccacagg gaacgagggc cgcgagccgc ccgaagggag gcgaagcgag 2401 cggcccgaac ttccctgtgg gcccaccggg gcgacgggca ctacgcacgc gcgagcgcgc 2461 gaggctgcga agttgggaag ggggtgcggg ggaaaccaga tgcggcaaat cgcgatgcga 2521 tttgaccatg aaaggcggcc ctgacgggcc gcgctagggg aaggtaaggg ctggcgcggg 2581 cgcgatgcgc cctccgggtc tcccgctctg cgctcgaccc gcgccacgag gtcaggggca 2641 acgggacggt aagcaaaagc ggcattggag acgaagcggc gaggatggcc gtgaaacccc 2701 gtcagacggg cgtacacggg ttttttgggt ttggtgctgt tttggggtgt caggacataa 2761 aacccgttct acggccttct gccgggccgg aatgcccatt ccggatcaat agccgcgtgg 2821 aatgaccagc ttgatattcc ccttggtggt tacccaaccg ctgtgctggt cactgctggc 2881 ctcgaagcag agatgaccgc cgcaggtctc ccacttcacc cgcgcgccct tggccttgag 2941 tgccttgagg ttggcccgtt cggtctggac ctcggcccgc agggcaatga ccttggtatg 3001 gaggcggtgg aatttgtgtc gttcccacca gatcgaggcg agactgccgc tcaccaccag 3061 cacaacggcc agcgccagga cggcgactga gcgcagattg agccagcgtg tcgcggtgcg 3121 gacctcggca acctgctcga cggcgctgga cgctgcctga gcggtgtccg aggcggcctt 3181 ctggatctcc ttcacggcct cgctggcgcc gtccagagcg gtcttgatgc tgctcacggc 3241 cttggtggcg gcctgatcga cggagcgggt gagggcgtcc ggattggcgg ccttcacgga 3301 ctcggtgcat ttggcgacct cggcggcgag ggcatccaga gcgtctacga tggggttgcc 3361 ggttgccatg ctacatctcg atcccccggc cgcgttcccg gccctggtcc ggtgtgcgtt 3421 gctgctggcg ttgctggttc tcgtgctcgc gggttttgag gattttctcg gcggctcgca 3481 tgtccagcat ctgggtggcg cgttgcatgt ccgggctggt ggttgcggcg atcagggcgg 3541 agggcagggg cagagcctgt ctgagcacgc tggcgaggcc ggggaggcgt tcgcgcatgg 3601 tctgcatgag gtttgagccg gcctggcgga cctgttccca ggagcggctc atggtgcgga 3661 gcatgccgcg atcctgcctg acctgcatgg cgtcccggag ggcgtaagcc cgcgtgccgc 3721 gtccctggcg tgccatctgc atggcgacgg ggccgatctt gggttccggg gcgcggtcca 3781 gttccatggc tctggcggct gccctgatgc ggtcgggttc gggctgggcg gggttctcag 3841 cggctgcgag ggcggcctgg cgctgatcgg cgagggagcg gtgatcgacc cgttcggggc 3901 ttctgacgcg ctcgagcgcc cgattgcagt gggtagccca ccgttcgcgg atggcctcga 3961 tgccgggtgg cttgtcgagg ctgtagtcct tgcccttggc gaagttgccg ttctcgaggg 4021 ggcgggtggt gagcatgatg tgggcgtgag gctgtgtctc gccgtcctga gccttggggg 4081 cgtggatggc gatatcggca accagcccct tgctggcgaa ctcagcgcgg gcgaactcgc 4141 ggaccaggct ggcctgttcg gcggtgttca gttcgcgtgg gagggcaacc agcacttcct 4201 tggcggtgcg ggcatccttg cgcttctcgg cggcatcggc ggcattccac aggcgttcgc 4261 ggtcgtggac ccattcgggt gcggcctctg gtgcgacgat ctcggagagt tcgacgtcgc 4321 ccttgtgggt gtaggcatgg tcgagttcct gacgctggtc gtgcaggcgg gtacgatgcc 4381 gataggcggc agcggcgacg caggatcgac cctgaccccg gctgatattc ttgatctcgc 4441 aacggtagat tgccacagat cggcctcgac gaatgaggaa atcaggttaa gctattttgg 4501 cggtttgaac aaccacgaaa ggattgagtg cgcggttacg tgttgctgcg caacacccgc 4561 ggcaatcctg ggggcgttgc ccccgccctg cgggcgcccc ccaccaatgg gcttgcgcgc 4621 cccttggaac cccgactagt ttttgtgtca tggcaaagcg gacggacgac gaaatccttg 4681 ctgatctcac cgcgaagcag cgtgagatcg agacgcggat caatgcggtg aaggcgcgct 4741 cgaaagaacg cgcccgcaag gaggagaccc gccgcaaggt gctggttggc gcggtcatcc 4801 ttgcggaagc ggagcggtct gaggccgcga agcaacggct ccaagccctg ctcgacaagc 4861 atcttgtacg ccctatcgat cgcgaggtgt tcgggctacc gccccggcca gaccagtctg 4921 gccaggcggc tacgtccagc gactcaacag cccgccctga cgatgccgac tgagtctcaa 4981 tcggccctga accatagccg gctcaaacca tgacatgtca tggtttgagc gtgacatgtc 5041 atggttgcct tgccatgata tgtcatggct aagaatagca gggacgggaa tcgagagcgc 5101 gccgcccggc gccgggcggc tctcgccgag cgtggtatca ggcccattca ggtgctggca 5161 ccggacgcgg ctcatccttt gatccgtcag gctgcggccc tcatgacccg cgacgatgcc 5221 cccctggaac cacgggcggc gctgcgtcgg gctggcgggg cgaatgagcc tgagcccggt 5281 gaggcatcgc ccggcctggc tgcggaactg gaagctgcca aagccaggat cacggaaatc 5341 gagcgtcagg cagaggcgca gagggtcatg gcggacgacg ccgcagagcg tcagaggcgg 5401 gcgctagagg ttgagcagga gaaggcgcgc gcgagcgcag aggaggccca gaaggccgcc 5461 agatccgccc aggtagccga agggcgggcg gcagaggcgc tacggcgcgc ggagaaggcg 5521 gaagccacca tacggcaggc caaggctcta ccgggcctca aaggccggct tgtgcgcctt 5581 ctggccggcg aggtgctgaa gtggcctgat tgacggcctc caccatcga //