LOCUS NC_009346 5153 bp DNA circular BCT 24-JUL-2008 DEFINITION Shigella sonnei Ss046 plasmid pSS046_spB, complete sequence. ACCESSION NC_009346 VERSION NC_009346.1 GI:145294031 DBLINK Project:13151 KEYWORDS . SOURCE Shigella sonnei Ss046 ORGANISM Shigella sonnei Ss046 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella. REFERENCE 1 (bases 1 to 5153) AUTHORS Yang,F., Yang,J., Zhang,X., Chen,L., Jiang,Y., Yan,Y., Tang,X., Wang,J., Xiong,Z., Dong,J., Xue,Y., Zhu,Y., Xu,X., Sun,L., Chen,S., Nie,H., Peng,J., Xu,J., Wang,Y., Yuan,Z., Wen,Y., Yao,Z., Shen,Y., Qiang,B., Hou,Y., Yu,J. and Jin,Q. TITLE Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery JOURNAL Nucleic Acids Res. 33 (19), 6445-6458 (2005) PUBMED 16275786 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5153) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (17-APR-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5153) AUTHORS Yang,J., Yang,F., Chen,L. and Jin,Q. TITLE Direct Submission JOURNAL Submitted (27-MAR-2007) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 100 YingXin Street, XuanWu, Beijing 100052, P.R.China COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000642. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5153 /organism="Shigella sonnei Ss046" /mol_type="genomic DNA" /strain="Ss046" /db_xref="taxon:300269" /plasmid="pSS046_spB" gene 1..1566 /gene="cea" /locus_tag="SSON_PB01" /db_xref="GeneID:4991510" CDS 1..1566 /gene="cea" /locus_tag="SSON_PB01" /codon_start=1 /transl_table=11 /product="colicin E1 protein" /protein_id="YP_001139957.1" /db_xref="GI:145294032" /db_xref="GeneID:4991510" /translation="METAVAYYKDGVPYDDKGQVIITLLNGNPDGSGSGGGGGTGGSK SESSAAIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRDALTQHLKDIVNEAL RHNSTHPEVIDLAHANNAAMQAEAERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIE KEQAETERQLKLAEDEEKRLAALSEEARAVEVAQKNLAAAQSELAKVDEEINTLNTRL SSSIHARDAETNTLSGKRNELDQASAKYKELDERVKLLSPRANDPLQSRPFFEATRLR ARAGDEMEEKQKQVTASETRLNQISSEINGIQEAISQANNKRSTAVSRIHDAEDNLKT VQTNLLNSQIKDAVDATVSFYQTLSEKYGEKYSKMAQELADKSKGKKISNVNEALAAF EKYKDVLNKKFSKADRDAIFNALEAVKYEDWAKHLDQFAKYLKITGHVSFGYDVVSDI LKIKDTGDWKPLFLTLEKKAVDAGVSYVVVLLFSVLAGTTLGIWGIAIVTGILCAFID KNKLNTINEVLGI" gene complement(1563..1904) /gene="imm" /locus_tag="SSON_PB02" /db_xref="GeneID:4991511" CDS complement(1563..1904) /gene="imm" /locus_tag="SSON_PB02" /codon_start=1 /transl_table=11 /product="colicin E1 immunity protein" /protein_id="YP_001139958.1" /db_xref="GI:145294033" /db_xref="GeneID:4991511" /translation="MSLRYYIKNILFGLYCALIYIYLITKNNEGYYFLASDKMLYAIV ISTILCPYSKYAIEHIFFKFIKKDFFRKRKNLNNAPVAKLNLFMLYNLLCLVLAIPFG LLGLFISIKNN" gene 1952..2089 /gene="lys" /locus_tag="SSON_PB03" /gene_synonym="kil" /db_xref="GeneID:4991512" CDS 1952..2089 /gene="lys" /locus_tag="SSON_PB03" /gene_synonym="kil" /codon_start=1 /transl_table=11 /product="colicin E1 precursor lysis protein" /protein_id="YP_001139959.1" /db_xref="GI:145294034" /db_xref="GeneID:4991512" /translation="MRKRFFVGIFAINLLVGCQANYIRDVQGGTVAPSSSSKLTGISV Q" gene complement(2372..2743) /locus_tag="SSON_PB04" /db_xref="GeneID:4991513" CDS complement(2372..2743) /locus_tag="SSON_PB04" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001139960.1" /db_xref="GI:145294035" /db_xref="GeneID:4991513" /translation="MSKKQSTGRSQRRRRFSIGSAPLTSITKIDAQARGGETRQDYKD TRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISARCRSFAPSWAVCT NPPFSPTAAPYPVTIVLSPTR" gene complement(2931..3125) /gene="rom" /locus_tag="SSON_PB05" /db_xref="GeneID:4991514" CDS complement(2931..3125) /gene="rom" /locus_tag="SSON_PB05" /codon_start=1 /transl_table=11 /product="RNAI modulator protein" /protein_id="YP_001139961.1" /db_xref="GI:145294036" /db_xref="GeneID:4991514" /translation="MNKQQQAVLNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHEL AEELQNSIQTRFEVENSTER" gene 3409..3732 /gene="mobA" /locus_tag="SSON_PB06" /db_xref="GeneID:4991515" CDS 3409..3732 /gene="mobA" /locus_tag="SSON_PB06" /note="plasmid mobilization protein A" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001139962.1" /db_xref="GI:145294037" /db_xref="GeneID:4991515" /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLR AAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLS RLMAD" gene complement(3957..4376) /gene="exc" /locus_tag="SSON_PB07" /db_xref="GeneID:4991516" CDS complement(3957..4376) /gene="exc" /locus_tag="SSON_PB07" /codon_start=1 /transl_table=11 /product="entry exclusion protein 2" /protein_id="YP_001139963.1" /db_xref="GI:145294038" /db_xref="GeneID:4991516" /translation="MRRTGNKLCLIAMITATVALTACTPKGSVEQHTRHYVYASDDGF DPNFSTQKADTTRMMVPFFRQFWDMGAKDKATGKSRSDVQQRIQQFHSQEFLNSLRGT TQFAGTDYRSKDLTPKKSRLLADTISAVYLDGYEGRQ" gene complement(4457..4876) /gene="exc1" /locus_tag="SSON_PB08" /db_xref="GeneID:4991517" CDS complement(4457..4876) /gene="exc1" /locus_tag="SSON_PB08" /codon_start=1 /transl_table=11 /product="entry exclusion protein 1" /protein_id="YP_001139964.1" /db_xref="GI:145294039" /db_xref="GeneID:4991517" /translation="MAWHTLRDALKMTGRSRSQFYRDMRSGLVSYRTSQDGRREFETS ELIRAYGELKRNETPERHTQGHSEKPHDQQTERILRELNELKQCLTLMLEDKQAQDTE RRRQEAERKQLQNEIAQLRQALEQEKKRGFWSRLFGH" ORIGIN 1 atggaaacag ctgtagcgta ctataaagat ggtgttcctt atgatgataa ggggcaggta 61 atcattactc ttttgaatgg taatccagac gggagtggct ctggcggtgg tggtggaact 121 ggaggtagca aaagtgaaag ttctgcagcc attcatgcca cagctaaatg gtctactgct 181 caattgaaga aaacgcaggc agaacaggct gcccgagcaa aagctgccgc agaagcacag 241 gctaaagcaa aagcaaaccg ggatgcgctg actcaacatc tgaaggatat tgtgaatgag 301 gcgcttcgcc ataattccac tcatccggag gttattgacc tggctcatgc caataatgca 361 gcgatgcagg cagaagcaga gcggttgcgc cttgcaaaag cagaagaaaa agcccgtaaa 421 gaagcggaag ctgcggaaaa ggcttttcag gaagcagaac aacgacgtaa agagatagag 481 aaggagcagg ctgaaacaga acgccaattg aaactggctg aggatgaaga gaaacgcctg 541 gcagcattga gtgaagaggc ccgggctgtg gaggtggcac aaaaaaatct tgctgctgca 601 caatctgagc tggcgaaagt ggatgaagag attaatacgc tcaatacccg tttaagctcc 661 agtattcatg cccgtgatgc agaaacgaat acgctgtccg gaaaacgaaa tgagttggat 721 caggcatctg ctaaatataa agaactggat gaaagggtta aacttttatc tcctagggcg 781 aatgatccgc ttcagagtcg tccttttttt gaggccacca gactacgggc gagagctggt 841 gatgagatgg aggaaaaaca aaagcaggta acagcatcag aaacgcgtct taaccagatt 901 agctctgaga taaatggaat ccaagaggct atttctcagg ctaataataa gcgaagtaca 961 gcagtttcac gtattcatga tgctgaagat aatttgaaaa cagtacagac taatctcctg 1021 aactcgcaga ttaaggatgc tgtggatgca acagttagct tttatcaaac gctatctgaa 1081 aaatatggtg aaaaatattc aaaaatggca caggaacttg ctgataaatc taaaggtaag 1141 aaaatcagca atgtgaatga agctctagct gcttttgaga aatacaagga tgtattaaat 1201 aagaaattca gcaaagcaga ccgtgatgca attttcaatg cactggaggc ggttaagtat 1261 gaagactggg ctaagcattt agatcagttt gccaagtact tgaagattac gggacatgtt 1321 tcttttggat atgatgtggt atctgatatc ctaaaaatta aggatacagg tgactggaag 1381 ccgctatttc ttacattaga gaagaaagct gtagatgctg gagttagtta tgttgttgtt 1441 ttacttttta gtgtgcttgc tggaactaca ttaggtatct gggggattgc tattgttaca 1501 ggcattctat gtgcctttat tgataagaat aaacttaata ctataaatga ggtgttgggt 1561 atttaattat tctttattga tataaacagt cctagcaatc caaatgggat tgctaggacc 1621 aaacaaagta gattgtatag cataaatagg tttaattttg ccacgggggc attatttagg 1681 ttttttcttt ttctgaaaaa atctttcttt atgaacttaa aaaatatgtg ttcaatagca 1741 tattttgaat atgggcatag aatagtgctt atcactattg cgtatagcat cttatctgac 1801 gctaggaaat aatacccttc gttgtttttt gttataaggt atatatatat aagtgcgcag 1861 tataggccaa acaaaatatt ttttatgtag tatcttaaac tcataaatta aacctcgtta 1921 tatattcttt tcattttata aggatcgagt tatgaggaaa agattttttg tgggaatatt 1981 cgctataaac ctccttgttg gatgtcaggc taactatata cgtgatgttc agggagggac 2041 tgtggctcca tcatcttctt ctaaattgac ggggatctct gttcagtaga aaagatcaaa 2101 ggatcttctt gagatccttt ttttctgcgc gtaatctgct gcctgtaaac gaaaaaaccg 2161 cctggggagg cggtttgatc gaaggttaag tcagttgggg aactgcttaa ccgaggtaac 2221 tggcttcagc agagcgcaga taccaaatac tgtccttcca gtgtagccgt agtcgggcca 2281 ctacttcaag aactctgttg caccatttgc gccatcatcg ctctgctaac caagttacca 2341 acggctgctg ccagtggcgc taagtcgtgt cttaccgggt tggactcaag acgatagtta 2401 ccggataagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc cagcttggag 2461 cgaacgacct acaccgagcc gagataccaa cagcgtgagc tatgagaaag cgccacgctt 2521 cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac aggagagcgc 2581 acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac 2641 ctctggcttg agcgtcgatt tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac 2701 gcctgcggcg ctggcttctt ccggtgcttt gctttttgct cacatgttct ttccggcttt 2761 atcccctgat tctgtggata accgtattac cgcttttgag tgagctgaca ccgctcgccg 2821 cagtcgaacg tccgagcgta gcgagtcagt gagcgaggaa gcggaagagc gccttatgtg 2881 acattttctc cttacgctct gttgtgccgt tcggcatcct gtcctgagcg ttatctctct 2941 gtgctatttt ctacttcaaa gcgtgtctgg atgctgttct ggagttcttc tgcgagttcg 3001 tgcagcttct cacacatggt agcctgttcg tcagcatcga gtgcgtccag cttttcgagc 3061 agcgtcaggc tttggctttt tatgaatcct gccatgttga gtacggcttg ctgctgcttg 3121 ttcatctttt cgttttctcc gttctgtctg tcatctgcgt tgtgtgatta tatcgcgtac 3181 cacttttcaa ctgttttacc gccggtattc tgccgtctga cgctttgacg ggtatttctg 3241 cctgacaata ctgtcactgc caaaaaactg ccgtgccttt gtcggtaatt cgaacttgct 3301 gacaggacag gatgtgtaat tgttataccg cgcatacatg cacgctatta caattaccct 3361 ggtcagggct ttgccccgac acccatgtca gatacggagc catgttttat gacaaaacga 3421 agtggaagta atacgcgcag gcgggctatc agtcgccctg ttcgtctgac ggcagaagaa 3481 gaccaggaaa tcagaaaaag ggctgctgaa tgcggcaaga ccgtttccgg ttttttacgg 3541 gcggcagctc tcggtaagaa agttaactca ctgactgatg atcgggtact gaaagaagtt 3601 atgagactgg gggcgttaca gaaaaaactc tttatcgacg gcaagcgtgt cggggacagg 3661 gagtatgcgg aggtgctgat cgctattacg gagtatcacc gtgccctgtt atccaggctt 3721 atggcagatt agcttcccgg agagaaaact gtcgaaaact gacggtatga acaccgtaag 3781 ctcccaaagt gatcaccatt cgctttcatg catagctatg cagagagctg aaaacgatcc 3841 tgacgcatcc ttcctgtttt tccggggtaa aacatctctt tttgcggtgt ctgcgtcaga 3901 atcgcgttca gcgcgtttca gtggtgcgta caattaaggg attatggtaa atccacttac 3961 tgtctgccct cgtagccatc gagataaacc gcagaaatcg tgtcagccag cagcctggat 4021 tttttcgggg taaggtcttt gctgcggtaa tcagtacccg caaattgagt tgtgccccgg 4081 agtgagttta aaaattcctg gctgtgaaac tgttgaatgc gttgttgcac atcactccgt 4141 gattttcctg tcgctttatc tttagctccc atatcccaga actgccgaaa aaaaggcacc 4201 atcattcgtg ttgtgtcggc tttttgggtg gaaaagttgg gatcaaaacc gtcatcagaa 4261 gcatatacgt aatgccgggt atgttgttcc acgctgccct ttggggtaca ggctgtgaga 4321 gctactgttg ctgttatcat ggcgataaga caaagtttgt ttccggtacg tctcatgagt 4381 gtctccctac cttaaagtat ttattctcgg tgagttatta tccgaagatt atcttatcat 4441 cagtttctga gcgcgttcag tgaccgaaca gcctggacca gaatccccgt ttcttttcct 4501 gctccagagc ctgcctgagc tgggctatct cattctgtag ctgtttccgt tctgcttcct 4561 ggcgccggcg ctccgtatcc tgggcttgtt tatcctcaag catcagcgtc aggcattgtt 4621 tcagctcatt cagttcccgg agaatgcgtt ctgtctgctg atcatgaggt ttttctgagt 4681 gtccttgagt gtgcctttct ggtgtctcat tccgctttaa ttcgccgtat gcccggatca 4741 gttcactggt ttcaaactcc cgtcgtccgt cctggctggt acggtaactg acaagacctg 4801 agcgcatatc acggtaaaac tgtgaacgcg atcttccagt cattttcagt gcgtcccgga 4861 gtgtgtgcca tgccataaag ttacagtgtc ccataggtgt ctcatctcat ggtttcagta 4921 aaacataatg aggtctgaga acggtaatgt ttgtgctggt ttttgtggca tcgggtggaa 4981 atagcacgtg gtgtgggtgg ctgttttttt gatcgttttc acaaaaatga aaatccacag 5041 ggttgacagg gaaaatgcag cggcgtaatt ttaaactgta tataaaacca gtgattatat 5101 atacagtatg ttgcttttaa ctatttgttt ttaatgtcaa agaggatttt ata //