LOCUS NC_008500 4449 bp DNA circular BCT 25-JUL-2008 DEFINITION Streptococcus thermophilus LMD-9 plasmid 1, complete sequence. ACCESSION NC_008500 VERSION NC_008500.1 GI:116326679 DBLINK Project:13773 KEYWORDS . SOURCE Streptococcus thermophilus LMD-9 ORGANISM Streptococcus thermophilus LMD-9 Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. REFERENCE 1 (bases 1 to 4449) AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B., Koonin,E., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K., Goodstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J., Goh,Y., Benson,A., Baldwin,K., Lee,J.H., Diaz-Muniz,I., Dosti,B., Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E., Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D., Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sullivan,D., Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P., Kozyavkin,S., Weimer,B. and Mills,D. TITLE Comparative genomics of the lactic acid bacteria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006) PUBMED 17030793 REFERENCE 2 (bases 1 to 4449) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (21-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4449) AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S., Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S., Makarova,K., Koonin,E., Mills,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc. TITLE Direct Submission JOURNAL Submitted (22-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000420. URL -- http://www.jgi.doe.gov JGI Project ID: 2662188 Source DNA and bacteria available from Robert Hutkins (rhutkins1@unl.edu) Contacts: Robert Hutkins (rhutkins1@unl.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by Kira Makarova and Eugene Koonin Finishing done by Fidelity Systems Inc. (Gaithersburg)URL -- http://www.fidelitysystems.com Project Information available at: http://genome.jgi-psf.org/mic_home.html The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4449 /organism="Streptococcus thermophilus LMD-9" /mol_type="genomic DNA" /strain="LMD-9" /db_xref="taxon:322159" /plasmid="1" gene complement(65..385) /locus_tag="STER_A1" /db_xref="GeneID:4405942" CDS complement(65..385) /locus_tag="STER_A1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_796427.1" /db_xref="GI:116326680" /db_xref="GeneID:4405942" /translation="MVNWTQLFNRNERQDSSKDEWAEYTEKSLQDFMKSEFMQSFAED CSQMLKDEGNEFYESYDTIKAKMNSVLTDFGYMSLEVYEDAFSEEKQLEDLLKFKAEY LASK" gene complement(1030..1611) /locus_tag="STER_A2" /db_xref="GeneID:4405943" CDS complement(1030..1611) /locus_tag="STER_A2" /codon_start=1 /transl_table=11 /product="DNA segregation ATPase FtsK/SpoIIIE or related protein" /protein_id="YP_796428.1" /db_xref="GI:116326681" /db_xref="GeneID:4405943" /translation="MSEFYPANRIAVEIDDVLRMLSYVCDKISSRQKIVADGVKTHQK MGLRAYDLGLSPIVVMADEIGSLVASMDSKQKKEFLALVTQIVQKGRSVSCFAIFGTQ SPKTDTTLSSDIRSQFATKILLGLASGENQRMAFDGEVARKGNIERFKGFYVSDGKTE QPMLFHVPDLHSHGLNDLKIIKKAYELGFSGNQ" gene complement(2378..3484) /locus_tag="STER_A3" /db_xref="GeneID:4405944" CDS complement(2378..3484) /locus_tag="STER_A3" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_796429.1" /db_xref="GI:116326682" /db_xref="GeneID:4405944" /translation="MGRNPYASMVYKVDWFAFTVSDEIDTNGAEKGFVLLENLGYDLD EFEPIPGRYFYNSGLTLGGYVNLYYNDYEKNLARNTSNSRNYVFTGQGCTDLAQKINN DWVGLFSILKKLGVKITRFDIALDDFNGVLSFPRMENKLVKGHYRSSKKTYNVVKQAD VNGDIKGYTLYIGSQAKSSTGTYFLRCYDKFAQYKEKAQIPPKEAIDTGIWQRYEISY TKKKARKIVDLMTDEGRTIGSVFMDTMRDIVEFLEPTKTQAKAIHKNKNRWKVSKWWQ DFLDSAEKVQLGEAERDLDLGGLLRWLRVSVVPALKLLEELGDAKGFDIHQIIKDITP SDYSKKQKRLFNNAMKQSSREIMTYLERFKEGEY" gene complement(3609..4016) /locus_tag="STER_A4" /db_xref="GeneID:4405945" CDS complement(3609..4016) /locus_tag="STER_A4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_796430.1" /db_xref="GI:116326683" /db_xref="GeneID:4405945" /translation="MSEEQTNGLSQLRKLQALQAQKKAQAKTSSMVKLENIVGVYLGT EPTEHFPKILDSNGNKVQEEKNGRKVDKRSETSDGWTYTFAEFATCKTIKIVLPQRVN VQLMGAYKLGGLGYDIKSGNMYFIEKDTTITNY" ORIGIN 1 tcctcccttt ccgtattgtt gaccttgtgc tttttcgatt gtgccgacga aaagaataaa 61 ccaactactt agaagctaga tattcagcct taaatttcaa caagtcttca agttgctttt 121 cttcagaaaa agcatcttca tacacttcaa gtgacatata cccaaaatct gtaagaacag 181 aattcatttt agctttgatt gtatcataac tttcataaaa ctcattacct tcgtctttta 241 gcatttgact acaatcttca gcaaaacttt gcataaactc agatttcata aagtcttgaa 301 gacttttttc agtatattca gcccattcat cttttgaaga atcttgacgt tcattgcgat 361 taaataattg tgtccaattt accataatgt aaatcctcct ttctttcttt gtacttttat 421 tataccacgc ttttatataa tattaaggga gggtttcata tctagaaaac ccattaatac 481 caacgattaa cagacttttc ttgcactttt aatttgacta aatttgccga ttttgctaaa 541 ataaatgcac ctatttggtc aattttataa ctaattaagc agaaaagaga catatatgtc 601 aaaatataaa agaaaattaa acataaaatg gtttgcaact acaaagctag gaatcgaaga 661 gcttgccaaa aatacagact tctcattaac atcatcagat ttcagacttc tgttttattt 721 actttcaaaa attgatgagg acaatctagc aaccttacca aaacaaaaag atatatctac 781 tgaaataaat atttcagtaa gaaaaatctc agaaggatta cgacgattac atgaagctaa 841 aatcatagtc aaatctggta agccaaaaac ttatttcatc aatccagcct ttttttacac 901 tggaggagct caagttttag aacttaaaca agaagatttt gacagtaact ttgcccccaa 961 agtagacaca tatactccaa tcgctgatgc tgctgaacta gaacgtcaat tacaaaccaa 1021 tccatatctt tattgattac ccgaaaagcc taattcatag gcttttttta tgatttttaa 1081 gtcatttaaa ccatgtgagt gtaggtcagg aacatgaaac aacatcggct gttctgtttt 1141 accatcagac acgtagaagc ctttaaaacg ctctatatta ccttttcttg ccacttcccc 1201 atcaaaagcc atacgttgat tttcgccact agccaaccct aataatatct tagtagcgaa 1261 ctggcttcta atatcgcttg ataacgtagt atcagtttta ggcgactgtg ttccgaatat 1321 tgcaaagcaa gaaacgctac gtcctttttg aacaatctga gtgacaaggg ctaaaaattc 1381 ttttttctgc ttactatcca ttgaagccac taacgaccca atttcatcag ccattacaac 1441 gataggtgac aaacctaaat cataggcacg taagcccatt ttttgatgtg ttttgacacc 1501 gtcagcaact atcttttggc gtgagctaat tttatcgcaa acatacgaca acattctcaa 1561 aacgtcatca atttcaactg caatacggtt agctggataa aattcagaca tagcactaaa 1621 ttcattttta gggtcaacta tatagatttc agatttcgac cacatcaatg attgaacaag 1681 caaagatatt aaggtagttg atttgccagc tcctgatttc ccccaacaaa tgatatgtgg 1741 gaaatcagct agatttatct tcaatccttc ttgtaaggtc aacacgtgac taggttgttt 1801 catctgtttt aaggtcgctg gtcgccaagt tttatcagtt gccacgtctt ctagtacaaa 1861 tttataagtc agtccgtccg tcgttatcat tccagacgtt actgcataac agcctaattt 1921 ccctttaaag ctagaattta tatcttctgt cagtctctcg atgtcgtaca taccagctaa 1981 tttctcgact tctacgctga tgcgtgaggg tctgctatca cacaccctca cgctcggaac 2041 cgaaataaag ggggtatctt gcagacgatt aactgacatt gtagccagca agctcttagt 2101 aaccgccttt tctgctcctc gttgtgtgat atatttgccg attgtccccg ctttgatcac 2161 tgactttgtc agtgaatacg ctcgccaaat cgtcaaaata gcgaccagcg accaaagccc 2221 aattatgcca aattggcata atttagacgg aacaaaataa ccaattacca aaaacaatac 2281 cgcaagccca aagactagcc cccaccatgc caaaaattga gcgtataaag gcactttata 2341 gacgttttga gcgttctttt tatacgtctt tgccatatta gtattcacct tctttaaagc 2401 gctcgagata agtcataatc tcacgacttg actgcttcat tgcattgtta aacagacgtt 2461 tctgtttttt cgaataatca cttggcgtaa tatctttaat aatttgatga atatcaaaac 2521 cttttgcatc cccaagttct tccagcaact ttaaggctgg cacaactgat acacgcaacc 2581 agcgaagcaa accgcctaaa tctaagtccc gttctgcttc tccaagttga actttttcag 2641 cactatcaag gaaatcttgc caccatttcg aaactttcca acgattctta ttcttatgga 2701 ttgcctttgc ttgcgttttc gtcggctcta aaaattcaac aatgtctctc atcgtatcca 2761 tgaaaacaga accgatagtt cgtccctcat ccgtcattaa atcaacgatt ttacgggctt 2821 tcttctttgt atatgaaatc tcataacgtt gccaaattcc cgtgtctatc gcttcttttg 2881 gcggaatttg tgccttttct ttgtattgag caaatttatc gtaacaccgt agaaaatacg 2941 tcccagtgct cgacttcgct tgtgagccaa tatatagagt atatccttta atgtcgccgt 3001 ttacgtcggc ttgcttaaca acgttataag tctttttaga cgacctataa tgtcccttaa 3061 ctagtttatt ttccatcctc ggaaaactaa gaactccatt gaaatcatct aacgcaatat 3121 caaaacgcgt aatttttaca cctaattttt ttaagattga aaatagtcca acccaatcat 3181 tattgatttt ttgcgccaaa tccgtgcaac cttgacccgt aaaaacataa ttacgactat 3241 tcgacgtgtt acgtgccaaa tttttctcgt aatcgttata gtaaagattt acatatccgc 3301 ccaatgttaa accagaatta tagaaataac gtcctggaat tggttcaaat tcgtctaaat 3361 cataacctaa attttcaagc aaaacgaagc ctttttcagc tccatttgtg tctatttcat 3421 cagacacagt aaaagcgaac cagtcaacct tgtaaaccat tgatgcgtaa gggtttctac 3481 ccattctaac acccctattc tcgtatctgt agaccccctg attagtgttc ggggtctatc 3541 tgctggaacc tagttccagc agtcccgaaa tttctatttt agcaatgaca taaatgtcat 3601 gttcaaatct agtaatttgt gatagtcgta tctttttcaa taaagtacat gttacccgat 3661 ttaatgtcat aacctaaacc gcctaactta taagccccca ttagttgcac gtttacacgt 3721 tgtggaagta caatcttaat cgtcttacaa gtcgcaaatt cagcaaacgt ataagtccac 3781 ccatccgatg tttctgaccg tttatctact tttcgaccgt tcttttcttc ctgtactttg 3841 tttccgttac tatctagaat tttcggaaag tgttcagtcg gctcagttcc caggtaaaca 3901 ccaacaatat tttctaattt gaccatgctc gatgtcttgg cttgtgcctt tttttgagct 3961 tgtagagctt gcaattttcg caattgtgat aatccgtttg tttgttcttc tgacatataa 4021 aaaatgtcct ttctttagtg aatttttaac gcttgtacac cgccaaaatt tactaaagaa 4081 aagacactaa gatatttttt ttcaaaattt cataacttga ccgtaagaga taaagtttga 4141 tataatgaag ttgcgaatat ttagggtctt gtaaagtaaa ctttgatcgg ttagtacaag 4201 actttttttt atgcttaaaa acagaattgc gacgttcttt tttaagctat gtagacatta 4261 taacacagaa aatcaatcaa taaaagacgg tcccccgtgt tctgttcccg tgggtttcca 4321 cccacacccg acaagcgtag gacgcttgac cccacctctg aaaagaatta ctgctcagtt 4381 gatttattct tttcgtcggc tttcacaatc tagcacttga tcaacaatac ggaaagggtc 4441 gctctcgct //