LOCUS NC_008389 5824 bp DNA circular BCT 28-JUL-2008 DEFINITION Roseobacter denitrificans plasmid pTB4, complete sequence. ACCESSION NC_008389 VERSION NC_008389.1 GI:115345712 DBLINK Project:16426 KEYWORDS HTG. SOURCE Roseobacter denitrificans OCh 114 ORGANISM Roseobacter denitrificans OCh 114 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter. REFERENCE 1 (bases 1 to 5824) AUTHORS Swingley,W.D., Sadekar,S., Mastrian,S.D., Matthies,H.J., Hao,J., Ramos,H., Acharya,C.R., Conrad,A.L., Taylor,H.L., Dejesa,L.C., Shah,M.K., O'huallachain,M.E., Lince,M.T., Blankenship,R.E., Beatty,J.T. and Touchman,J.W. TITLE The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism JOURNAL J. Bacteriol. 189 (3), 683-690 (2007) PUBMED 17098896 REFERENCE 2 (bases 1 to 5824) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-SEP-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5824) AUTHORS Touchman,J.W. TITLE Direct Submission JOURNAL Submitted (11-JUL-2006) DNA Sequencing Center, Translational Genomics Research Institute, 445 N. Fifth Street, Phoenix, AZ 85004, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000467. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5824 /organism="Roseobacter denitrificans OCh 114" /mol_type="genomic DNA" /strain="OCh 114" /db_xref="taxon:375451" /plasmid="pTB4" /note="type strain of Roseobacter denitrificans" gene complement(838..936) /locus_tag="RD1_D0001" /db_xref="GeneID:4312109" CDS complement(838..936) /locus_tag="RD1_D0001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_771890.1" /db_xref="GI:115345713" /db_xref="GeneID:4312109" /translation="MIGIFRPSLQLHHDDMRTHAPDALVSHRCASF" gene 983..1570 /locus_tag="RD1_D0002" /db_xref="GeneID:4312110" CDS 983..1570 /locus_tag="RD1_D0002" /codon_start=1 /transl_table=11 /product="oxidoreductase, putative" /protein_id="YP_771891.1" /db_xref="GI:115345714" /db_xref="GeneID:4312110" /translation="MRSAHLSFRQDVWPDGLTYLENYISEDEAGRLVQEIDAALWRTD LKRRVQHYGYRYDYKARQAWREDYLGPLPELFQSLAERLTAEGHFQTVPDQVIVNEYQ PGQGISAHIDCQPCFGETIASLSLLSACVMRFASRIYSQQMELHLQPSSLLVLQSDAR HLWTHAIPPRKTDVFEGQKYARARRISLTFRTMKF" gene 1855..2859 /locus_tag="RD1_D0003" /db_xref="GeneID:4312111" CDS 1855..2859 /locus_tag="RD1_D0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_771892.1" /db_xref="GI:115345715" /db_xref="GeneID:4312111" /translation="MSLLPDRHPQKDFFILDIADVVPKDDTASMEHPLFSLATKPDMR HLVYQNGENRLEIAPSILGLPTIKDKDILIFCISQLMHMKNRGEKIGKRVRFSARELS IATNRPVGGDHYKRLEQAFKRLQGTQFTTTIRTGKKPGVKIFSLVDQAGFVMQEDTWR LDYCEVVLSDWLMRAIEANEVVTITNDYFRLRRPLERRIYEIARKHCGEQKKWQIGLA NLQNKTGSNAPLKKFRLNIRQIISDDHMPFYRMELTSDDLVIFRPRKAKTTLAPSITL PDWAEEKARGIARDKGWDYHALRAKWMEFAQDEAGKGNPPQNAGAAFVAYCQKQQSVR" gene 2663..3529 /locus_tag="RD1_D0004" /db_xref="GeneID:4312112" CDS 2663..3529 /locus_tag="RD1_D0004" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_771893.1" /db_xref="GI:115345716" /db_xref="GeneID:4312112" /translation="MRLPSPCQTGPRKRPAGSRGIRAGTITLSAPNGWNSPRTRLAKG TRPRTQARPLWPTARNNSRLGKMAFEIKTITDTWQSVSANRSFVHPSDERALTQSTAK FSQGRVPEPWFGNPRLARIFVLTLNPGHGKADDNHSTATQDFFWSMMDCKADYSDYLS GVSQDGLNWGRRHYGSFLERSMSAICNLRLVAYPSPDKAATGNISAAPADVLPTARLM RDFVHNSLAPAARNGDCLLLVMRSPQAWGFGNPDADSWDNGLFVSRSLRTASITPSSR VGPAIQEWLAKV" gene complement(4109..4621) /locus_tag="RD1_D0005" /db_xref="GeneID:4312113" CDS complement(4109..4621) /locus_tag="RD1_D0005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_771894.1" /db_xref="GI:115345717" /db_xref="GeneID:4312113" /translation="MSAVGQNFPSQHFVDPALPPRTRGLELGDDLLVQPDRHGYLWVC RPGAPADVLAHFLGESGKGLRERPSLRHLRVRDLRRIRITGDQLLNPGLFGIGDWRVL LVRHSRLLSLRLAGRIEITETPSVPRRAKTTAMVPSSRRPIAMWRPSFAGTVTASRKN HSSRSAKSSP" gene 4784..5047 /locus_tag="RD1_D0006" /db_xref="GeneID:4312021" CDS 4784..5047 /locus_tag="RD1_D0006" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_771895.1" /db_xref="GI:115345718" /db_xref="GeneID:4312021" /translation="MPDLCVIRFVERKRLPPVLGIVHPPGDLRDVVAHLVERTLHRME RLGQLGIRRGHTSHIPDDIAQRFTSVSNAGLFQLLIEQRQIRR" ORIGIN 1 tacgcgaaac cggccatcta tcggcaatcg tcaatcagta catggcgcaa gtcgaaatcc 61 gactaaagaa ccagcttgcc cgcgtcgcaa gagccaaacg caatggccgg atcactgaca 121 cattttacaa cagctatggc atgaccaatg tcgttttcag tatcggcgat acagtgatcg 181 gcggcgaatt ttcaggtagc gtagaagaac agcatggtgt cctgagcatg gaaggctcgt 241 ttgatttcta cttgcgggac gagtttgccg accctgccga cataggcgtt gaggtgatcg 301 atccaggcga gacaatcttt gagaacatcc acagacctct cgataattat ctcagaggac 361 gcaccggcct tgcgccgcgt ggcccccaac ggcttggtgt tcaaaccggt gagccgtatt 421 cgataactga cgattggtca ggaacgctga gcgggcaaat atacttggat cctgcgcgaa 481 gtgcctatgg atagcttccg ccctcctttg gcagtcggaa tggtagctgc agtttttgca 541 ttggggttct tctggggggt tccgacgcac tgcgtgcagc ttcccaacgg attgaacatc 601 ggcaaacaag ctctgctcga tctgaaccga ccatatttca gaccagacat tgttcctaag 661 tttgacaacg ggcaatcgct gttacctgga gacgcctggc cgttctacgc cacagaaaca 721 acagttcacg ggctcgcgct agaagccgat cctgaagatg atttctggtt tgcatggcga 781 gaagacacag gtctggtgct caaagctgaa gatccggcgc tttacgagag actcgtttca 841 gaagctggca caccgatggg aaacaagggc atcaggggcg tgggttctca tatcgtcatg 901 atggagctgc aaagacggcc ggaatatgcc aatcaaacct gtcggacgcg gtggatagtc 961 gttggcacag gggggcttta gtttgcggtc agcccacctc tcatttcgtc aggatgtatg 1021 gccggacggg ctgacctacc tggaaaatta catctcggag gatgaagcgg gcaggctcgt 1081 ccaggagatc gacgcggccc tctggcgcac cgatctgaaa cggcgggtcc agcattacgg 1141 ctatcgttac gactacaagg cgcggcaagc ctggcgggaa gattatcttg gaccgttgcc 1201 cgagctgttc cagagccttg cggaacggct gactgcagaa ggtcatttcc aaaccgtccc 1261 agaccaggtc atcgtcaacg aatatcagcc cggacagggc atctctgccc atatcgactg 1321 ccagccgtgc tttggagaga caatcgcctc cctgagcctt ctctccgcct gtgtgatgcg 1381 gtttgcctct cggatttatt ctcagcaaat ggaactacat ctccaacctt cgagtctgtt 1441 ggttttgcag agtgatgctc gccatctgtg gacccatgcc atcccgccca gaaagacgga 1501 tgtctttgag ggtcaaaagt atgcccgtgc tcgacgcatc tcactgacgt ttcggacgat 1561 gaagttttaa aacccttagt gttaatagtg ttacctacgg agtagtgtta cgggccaaaa 1621 aatcagccct aaccatatga tctaaaaaca ggaaaccatc cacagggttc cgaaagggcc 1681 aaacttgggt tccgaaaggg ccaaacttgg gttccgaaag ggccaaacgg aaaatcagct 1741 gaaacggttc ctgaagggcc aaacttgggt tcccgatgta aagaacctca gatcggttcc 1801 tgatcggcca aatttatggt tcctgatcgg ccaaacattt tgtagcattc ggacatgtca 1861 ctgctacccg atagacaccc tcagaaagac ttctttatcc tcgatatcgc tgatgtcgtt 1921 cccaaggatg ataccgcctc gatggagcac cccttgttct ccctcgcgac caaaccggac 1981 atgcggcacc tggtctatca gaacggcgag aataggctgg agatcgcacc ttccatcctg 2041 ggactgccaa ccatcaagga caaagacatc ctgatcttct gcatcagcca gctgatgcac 2101 atgaagaacc ggggagagaa gatcggaaaa cgcgttcgtt tctccgcgcg tgagttgtcc 2161 attgccacga accggcccgt tggcggggac cattacaagc ggctggagca ggccttcaag 2221 cggctgcaag gcacgcaatt taccaccacg atccgcaccg gaaaaaagcc cggtgttaag 2281 attttcagtc tcgtcgacca ggcaggcttc gtgatgcagg aggacacatg gcggctcgac 2341 tattgcgagg tggttctgtc tgactggctc atgcgcgcga tcgaagccaa cgaggtcgtg 2401 acaatcacca acgactattt ccgcctacgt cgcccgctgg aacggcgcat ctacgagatc 2461 gcccgcaaac actgcggcga gcagaagaag tggcaaatcg gcctggccaa cctgcagaac 2521 aagacaggca gcaacgcccc cctcaagaaa ttccgcctca acatccgcca aatcatctca 2581 gacgatcaca tgccgttcta ccgcatggag ctaacgtcag atgatctggt gatcttccgc 2641 ccccgcaagg caaagaccac gcttgcgcct tccatcaccc tgccagactg ggccgaggaa 2701 aaggcccgcg ggatcgcgcg ggataagggc tgggactatc acgctctccg cgccaaatgg 2761 atggaattcg cccaggacga ggctggcaaa gggaacccgc cccagaacgc aggcgcggcc 2821 tttgtggcct actgccagaa acaacagtcg gttaggtaag atggcttttg agattaaaac 2881 catcacagac acatggcaga gcgtctcggc caatagatct ttcgttcatc cctccgatga 2941 gcgcgccctg acccaatcca cagcgaaatt ctctcaaggc cgcgtcccgg aaccatggtt 3001 cggcaacccc agattggcac gcatatttgt tctgacgctc aacccaggac atggaaaagc 3061 cgacgataat cacagcacgg caacgcagga tttcttctgg tcgatgatgg actgcaaggc 3121 agattactcg gactacctga gcggcgtttc acaagatgga ctaaactggg gtagacgaca 3181 ctacggtagc tttcttgagc ggtccatgtc tgcaatttgc aacttgcgcc tggttgcata 3241 cccgagccct gataaggccg ctacgggcaa catttccgcc gctcccgcag acgttcttcc 3301 cacagccagg ctcatgcgtg attttgttca caactcgctt gcccctgcag ctcgcaacgg 3361 tgactgcttg ttgctcgtga tgcgttcacc acaagcctgg gggtttggaa acccagacgc 3421 ggacagctgg gataatgggc tgttcgtctc tcgaagcctg aggactgcct cgatcacacc 3481 atcttcgcgc gtgggtccgg cgatacagga atggctcgca aaggtttaag ccggtaacac 3541 cggattaccc cccaaccaag cgcgcccaaa atcccttctt ccgggtgctc tgatcctcga 3601 tcaacgccgt gatcttctga gcctggtctt tccagctatc ccgatcagct cgggtttcct 3661 ccagcatctc acgcaatagc tcaacttcgc gctctaacgc actggtttca gaaggggttt 3721 cacttcctaa cattgttcgg gttgcgccac tttcatctga aacggcgggc caaacccgaa 3781 aaagctctga tgcttcgatg atccacccac caccgtcacg tggttctgcg gacaatttcc 3841 ctttttttat ggctcttgtg atcgtcggaa cgctctttcc gactttcttc gctgcctgcg 3901 atgcggatag tgacatgccc gttacctcac ccctttcaaa ccgtaaaaat gttagtttct 3961 gaaagggtaa catctttaca cccccgtgta aaacctctcc atggtgcgcc tttcatgcga 4021 tcttgacgaa ggattaagtt tttgtatata cataaactat gattactatc gtctgggatg 4081 agccaaagcg gcaaaccaat ctggcaaatc atgggctgga cttcgcggac ctggatgagt 4141 ggtttttcct cgaagccgtc accgttcccg caaaagaggg tcgccacatg gcaattggac 4201 gtctggacga tgggaccatc gccgtagtct ttgcccttct ggggacagaa ggcgtctcgg 4261 tgatctcaat gcgccctgca agccgcaagg aaaggagcct gctatgacgg acaagaagca 4321 cacgccaatc tccgatgccg aagaggcccg gattcaaaag ctgatcgcca gtgatcctga 4381 tgcgcctgag atcacggacg cgcaaatggc ggaggctagg ccgttcacgg aggcctttcc 4441 cgctctcgcc gagaaaatgc gcaagaacgt cggcgggcgc cccaggtcgg caaacccaaa 4501 ggtacccgtg tcgatccggc tggaccaaga ggtcgtcgcc aagctcaagg ccacgggtcc 4561 tgggtggcag agccgggtca acgaaatgct gcgacgggaa gttctgaccg accgctgaca 4621 agcctgcacc cgaccgcccc catatggcgg ggagggcgca ggcttagccc ccgcgcttgg 4681 ccaggttctt caactcgtcc gaaatcttga gctcaagtga gctgcgccgc ccatcagcca 4741 tcagtgcaac ctcgtccgca aagtcgagca ccattccggc caggtgccgg atctctgcgt 4801 gatccgtttc gttgaacgga agcgactgcc cccggttctt ggcatcgttc atccgcctgg 4861 cgatctgaga gacgttgttg cccaccttgt tgagcgcacc cttcatcgta tggagcgcct 4921 cggccagctc ggcatccggc gcggccatac ctcccacatt ccggatgaca ttgcgcaacg 4981 cttcacttcg gtttcgaacg ccggcctctt tcagcttctc atcgaacaac gccagatccg 5041 caggtgacac acggcagacc acggtttccg tcctgctgcc ccgctcgatc tgtatctcgc 5101 gcatgaactg ggcgcagcga tagaccgttc gcacggtaac gccatactcc cgtgccagaa 5161 cgtccgggcg gacgccttca cgcaacttct tggcgatgga ttggcgggtt gtgtgatcta 5221 gtctgcgggc catttgtcac aaatgtaata cgttgctatt tcctgccact ctcacacaac 5281 cgaaatcaag ctctcaaggg gcaaacctct cggaaacggc tgtaagccct ctgaaggcgc 5341 tgtgagggga tttcagggtg cgctgcatca acggggaacc cggcgaactc atggttaacg 5401 atttctaaag cgctcaacag cacaaagatg tgctgaatga acaacctggc gcgcgaaatg 5461 actctgatca atccgaatga gtatcgggaa gcctttgtgc aatatctgcg caagggaaca 5521 ccgatccggt ttgagaccaa aaacgctcag gcaaccacgc attacatctg gcggacacga 5581 cgcgacggta aagtgcgctt gtctcatgct gaacgcgaag gtcaggtttt cgcgtgggac 5641 gatccgccgg aaggtggcca ccccggggaa gattatggat gccgctgcac ggcagaacca 5701 tacctcccac agacctcgga attcatggaa atctccttgc agggcgtttc aggcggcggt 5761 gccgcttgga gtggcaggga tttcgtgaac cactattacc aaggaaacgg tagaggcgtc 5821 accg //