LOCUS NC_008320 6499 bp DNA circular BCT 04-SEP-2006 DEFINITION Shewanella sp. MR-7 plasmid1, complete sequence. ACCESSION NC_008320 VERSION NC_008320.1 GI:113951722 DBLINK Project:13903 KEYWORDS . SOURCE Shewanella sp. MR-7 ORGANISM Shewanella sp. MR-7 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella. REFERENCE 1 (bases 1 to 6499) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Plasmid1 of Shewanella sp. MR-7 JOURNAL Unpublished REFERENCE 2 (bases 1 to 6499) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-SEP-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6499) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000445. URL -- http://www.jgi.doe.gov JGI Project ID: 4000370 Source DNA and bacteria available from James Tiedje (tiedjej@msu.edu) Contacts: James Tiedje (tiedjej@msu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6499 /organism="Shewanella sp. MR-7" /mol_type="genomic DNA" /strain="MR-7" /db_xref="taxon:60481" /plasmid="Plasmid1" gene 912..1604 /locus_tag="Shewmr7_4036" /db_xref="GeneID:4250551" CDS 912..1604 /locus_tag="Shewmr7_4036" /note="PFAM: initiator RepB protein; KEGG: gka:GKP02 replication initiator protein" /codon_start=1 /transl_table=11 /product="initiator RepB protein" /protein_id="YP_732132.1" /db_xref="GI:113951723" /db_xref="InterPro:IPR000525" /db_xref="GeneID:4250551" /translation="MNSKLTVTKSNLLIDASYRLNVQAQKLVLACLSKIDSRPDSEPK KEIKLTAIEFSELMGIDIKNAHRELYKAADALFKSSILLRNEHEETELYWIQKKVKKL RGEGAVTLVWSDEVLRYICQLKSHFTSYKLRNIASLQSGHSIRLYELLMRFNATNSRV IALDDFRSALGLEEKYPQFKELNKFVIKFAVEELNQRSDLVITYETLKKGRTVTALAF TFKQNKQLKMDL" gene 1638..2108 /locus_tag="Shewmr7_4037" /db_xref="GeneID:4250552" CDS 1638..2108 /locus_tag="Shewmr7_4037" /note="KEGG: cps:CPS_0716 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_732133.1" /db_xref="GI:113951724" /db_xref="GeneID:4250552" /translation="MARKWMQHMAKLNLSQAAKAVGKNRVTLWRHINTGKLSAERDRD GNPLVDTSELIRVYGEIKQPATPRNTKKQHYTTPSYDELLLLIKELKSEQSEMKEIIL DLKNRLEYKPTNSPNEDEKVTNSIAEDDPEWPQEVSSFADILLRNKIKLRYRNK" gene complement(2121..2582) /locus_tag="Shewmr7_4038" /db_xref="GeneID:4250553" CDS complement(2121..2582) /locus_tag="Shewmr7_4038" /note="KEGG: rme:Rmet_6065 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_732134.1" /db_xref="GI:113951725" /db_xref="GeneID:4250553" /translation="MGSFDWVALAAFIFSVYNMYRGRQFARKQEDLTDVKNALSKVQL QLEKIRVLEMYKADFGARFVKEGTSKKLVITNKGKAEARNVTLTFTEGPYFVINQEVS SKFPMTSMDSMSSVRLLATSSLERTEVKEKFVVGWVDDSGVHNKTFDIPVY" gene complement(2584..2859) /locus_tag="Shewmr7_4039" /db_xref="GeneID:4250554" CDS complement(2584..2859) /locus_tag="Shewmr7_4039" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_732135.1" /db_xref="GI:113951726" /db_xref="GeneID:4250554" /translation="MNNIVTQVALLCPICGNELFHGNEDSEGFIACSDCGHECTNDEL IADNSELIDEELKVSLGKAKKNLEDQMFKSLQRAFKGSKNIKIKRGR" gene complement(3743..4039) /locus_tag="Shewmr7_4040" /db_xref="GeneID:4250555" CDS complement(3743..4039) /locus_tag="Shewmr7_4040" /note="TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: son:SOA0023 proteic killer suppressor protein" /codon_start=1 /transl_table=11 /product="XRE family plasmid maintenance system antidote protein" /protein_id="YP_732136.1" /db_xref="GI:113951727" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR013430" /db_xref="GeneID:4250555" /translation="MKSTRKPAHPGMFFKREVLEERGISVTDAAEYLGITRKALSEFV NGKAKCSHAMARRLAESTGTGVAFWINMQAKLDTWEAENMEVENVSLMPTVKVA" gene complement(4089..4394) /locus_tag="Shewmr7_4041" /db_xref="GeneID:4250556" CDS complement(4089..4394) /locus_tag="Shewmr7_4041" /note="PFAM: plasmid maintenance system killer; KEGG: son:SOA0022 proteic killer active protein" /codon_start=1 /transl_table=11 /product="plasmid maintenance system killer" /protein_id="YP_732137.1" /db_xref="GI:113951728" /db_xref="InterPro:IPR007711" /db_xref="GeneID:4250556" /translation="MTIKNFRDKRLKKFFCDNDESGLNPDHIVKIGDALDAIDSSHHP RDLKAIYQRKFSEKKGSGEGVYSIEINGNWRITFQVEDDGAILLDYVDYHGKAIKSR" gene complement(4956..5255) /locus_tag="Shewmr7_4042" /db_xref="GeneID:4250557" CDS complement(4956..5255) /locus_tag="Shewmr7_4042" /note="KEGG: son:SOA0173 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_732138.1" /db_xref="GI:113951729" /db_xref="GeneID:4250557" /translation="MYLENVTQTRAIEMTETSKNQHGGARPGAGRKTKYEKTVVMRVP EKYQDAIKALIAHLDETAYIDGHYRNGHASEPVFLRSLDDNAQHVTFTTKPVLKK" gene complement(5454..6317) /locus_tag="Shewmr7_4043" /db_xref="GeneID:4250558" CDS complement(5454..6317) /locus_tag="Shewmr7_4043" /note="KEGG: noc:Noc_0627 putative integrase" /codon_start=1 /transl_table=11 /product="putative integrase" /protein_id="YP_732139.1" /db_xref="GI:113951730" /db_xref="GeneID:4250558" /translation="MASDFMYGCNQVLKHNRDGSFATQTDRRRTLALVDRQLQELGVK KLKLKNIGARHVDALLHRWQQEGLSAGTIKNRMAHLRWVSEKIGKNGVISRNNDTLGI DARQYVSNRDLSSQLDLERLKLVCDERLQVSFQLQQLFGLRREECMKLQPNVADRGDV LHLDKTKGNRPRDIPVRTPEQRALLDRAKLLAGGGSLIPPDLKYVEQLNRYKTACIRM GLNKAHGLRHGYAQQRYLELTGRQCAACGGLERREMSPDMRQTDREARQLITEELGHT RDEITSVYLGR" ORIGIN 1 ttcaggtttt agtaattccc acacaattga gcacactgtt gcggctgcag attggtatca 61 gttaggagac attgaaacag cgcctgttgg cgtggtttct ataaaaatgt atgtgatgaa 121 ttatctattt tgtgctcaat ggagcggcga gtaagccttg atattaacac tggtgatcgt 181 gggtatcaat aaccccgtcg tcacgtgtta gctacgagaa aaaaagggtg gggtgggttc 241 atatcacaag tattggctcg ttctgtcact gtcagcaagt cgccagtgac agaacgagcc 301 cccacccttt tttgctcctc cctggttcag ctcgacagac ttcctagtcg aacctcacca 361 gggaggtttg attaagttac aaattcaagt ctattccctg ctagaccgga gcgaagcgac 421 cgctttttaa cggaacctgc cgcaccttgg cggctagacg gtcggagaca aaaccagctt 481 gcagcgcggc gttagtctcg cccctagcga agctaggaag tggcgaggca ttttagggga 541 agggtggagc ctttaggcga ccttggggcg cagccccgtg gtcgcggcgc agccgctatc 601 ttttcgttta ggtggccaga tttacgatgg ttatccacag gcgaagccct ttttaataga 661 tctttcttgt ttttatagat ctttcttgtt tttaagctcc tcgctaaccc ttggtgtatt 721 tgagctgtag cgatcgtagg tggtgggatt tacggtgaaa atggctctaa aggtggtggg 781 atttacggtg aaaatagctc taaaggtggt gggatttacg gtgtaatcaa caggtttaag 841 tggtactgat tgacaatcga taccacttat aattatggtg gtatcaaata tagttgagca 901 ccaccataaa gatgaattct aaactaacag taacaaaatc aaatcttctc attgatgcca 961 gttacaggct gaatgtacag gctcaaaagt tggtgctagc ttgcctttct aagatcgatt 1021 cgcgcccaga ttcagaacct aaaaaagaga taaaactcac cgcaattgag ttctctgaac 1081 taatggggat tgatataaaa aatgctcaca gggagctata caaagccgct gatgcccttt 1141 ttaaatcgag cattttatta cgtaatgaac atgaagaaac tgaactttac tggattcaaa 1201 agaaagtcaa aaaactgcgc ggagaagggg ctgtaacgct ggtatggtca gatgaagttt 1261 tacgttatat ttgccagcta aaatcgcact tcacctccta caaactgcgt aatattgcta 1321 gcttgcaatc agggcacagt attcgcctat acgagctact aatgcgtttt aacgctacca 1381 atagtcgagt gattgcccta gacgatttcc gttcagcttt gggcctggaa gagaaatacc 1441 ctcagttcaa agagctaaat aaattcgtta taaaatttgc cgttgaagag cttaatcaac 1501 gtagtgactt ggttatcaca tacgagacgc tcaagaaagg acgaacagtg acagcgttag 1561 cttttacatt caaacaaaac aagcaactga aaatggattt ataatccagc tgcaacacat 1621 gcaacaccag cggcccattg gccagaaaat ggatgcaaca catggcgaag ttaaatttaa 1681 gtcaagccgc caaagccgtt ggcaaaaaca gagtcacact ttggcggcat atcaatactg 1741 gtaagctttc tgctgagcga gatagggacg gaaacccatt agttgatacg tctgaattaa 1801 tccgtgttta tggagagatc aaacaacctg caacaccgcg aaacactaaa aagcaacact 1861 acacaacacc ttcttacgat gagcttttac tactaataaa agaactaaaa tcagaacaat 1921 ctgagatgaa agaaatcatc ctcgatttga agaatagact tgaatataaa ccgactaact 1981 cccctaatga agatgaaaaa gttacaaatt caattgcaga agacgatcct gaatggccgc 2041 aagaagtcag ctccttcgca gacattctac tcagaaataa aattaagctg aggtacagaa 2101 ataagtgatg tggtgaggta tcagtagact ggaatatcga atgttttatt atgaactccg 2161 gaatcatcta cccatccaac aacgaatttc tcttttacct cagttctttc tagtgaacta 2221 gtagccagca aacgcacact actcatagag tccatagatg tcatggggaa tttcgagcta 2281 acctcttgat taattacaaa atatggccct tcagtaaaag taagggtaac atttcttgct 2341 tcagctttcc ctttgttggt tataacaagc ttttttgaag tgccctcttt gacaaaacga 2401 gcgccaaagt cagctttata catttcaaga acgcgaattt tttcaagctg cagctgtact 2461 ttgctcagtg cgttttttac gtccgttaaa tcttcctgtt ttctagcaaa ctgacgccca 2521 cgatacatgt tgtatacact aaagataaat gcagctaatg ccacccaatc aaagcttccc 2581 aattcagcgg cccctcttaa ttttaatatt tttacttcct ttaaacgctc tctgtaaaga 2641 cttaaacatt tgatcttcta aatttttttt agcctttcct aacgacacct taagttcttc 2701 atcgattagc tcagagttgt ctgcaatcaa ttcgtcattg gtgcattcat ggccgcaatc 2761 gctacatgca ataaagcctt cactatcttc attgccatga aaaagctcat taccacaaat 2821 tgggcataac aacgccactt gagtcactat attattcatt cagcactcca aaagtagatg 2881 ccatttctga ctactatttg atttacaatt tccagagttc aaaaaacaac ccaactttta 2941 aattcacctt caaaaaacag gtgcgcccaa gagtcattat gttaaatcaa tgactttagg 3001 tgtgtttttg ccggcttagt gacataaaac aggaaagaag gccgaataat cttcttatcc 3061 tccccagaaa agtgggattg gggctgaaat attatttcag aaaaaaaact aagacagact 3121 tggaaaacac caaattgcgt aaatggctta atcgccgcgt aagccgcaaa aaactaagtt 3181 tactgccgct aaatgtgagg tgttgatatc accaacacct caccacatta cctagcgctt 3241 aggggtagag cggcagtgct cacgaacgcg ctcccaacgc ccaaaacgac ggcgaaggta 3301 agtgtttacg tgcacagggc tcaggatagg gcacatcaac atgtgtcacc tccataaagt 3361 gcattcttat aacttgcgct aagaatctgc acttcctata ctctacgctc ctcgccaaag 3421 gaaacttaga gttagaagtg cggaacagtt tccgcataaa ctgctcgatc ccagttttgg 3481 gggtgaatgt tcttagcatt cactttccaa aactgcgccc cactatcttc acggttattc 3541 atcaattctc tattccaatt tctccttttc tatttattat gtaaaacatt aagtacaatc 3601 ttttaaaaac actacatata gtagctcatc tctaaaaaaa caccacatat agtgttatcg 3661 ttataaaaat actacatgtt gtttttctaa tttttgctct ataaatgaaa aagccgacca 3721 ttattggtcg gctttttcac ttctatgcca ccttcacagt tggcattaat gacacgttct 3781 caacttccat attttctgct tcccaagtat ccagtttagc ctgcatgttt atccaaaaag 3841 caacaccggt tccggtagac tcagctaggc gtcgagccat tgcatgagaa cattttgcct 3901 ttccattcac aaactcactc agtgctttcc tggtaattcc aaggtattca gctgcgtcag 3961 taacagagat acccctctct tccaaaactt ctcttttaaa gaacatgcca ggatgagctg 4021 gttttctcgt tgatttcata actaactcct caaaacgcct acaacataaa agcgttcata 4081 gatggagatc atcgagattt aatggctttg ccgtgatagt caacgtagtc caacaaaatt 4141 gcaccatcat cttctacctg gaatgtgatc cgccaattcc cattgatctc tattgagtat 4201 acaccctcgc cagaaccctt cttctcagag aactttctct gatagatagc tttcaggtct 4261 ctcggatgat gactcgaatc gatagcgtct aatgcatcgc caattttaac gatgtggtca 4321 ggatttagac cgctttcgtc attatcacag aaaaacttct tcaggcgttt gtcgcgaaaa 4381 tttttgatag tcaaaactgc ccccttgaaa aaccatccac ccacatcttt gggtggtttc 4441 gataattaaa taatccatag ctcgctccag tcatggcaaa ttttatgtta ttaaaataat 4501 taacccattt taatcaaacg gttatttgca tctgtgcagt attcagtcaa gggcagtaca 4561 cagaatttgt ttaaatacat aactcatctg taattgctgc atcattccgt tatgcagcaa 4621 aataatagta acccgacacg ttacacgtgt caactgctat aattaggttc acgaaagaat 4681 acatatgctc tggaggtggc gactatctgt cgcctaaagt cgttattgaa ttgtcacgac 4741 accatttttg acagcatcat ctttctccag cttgattaac aagatctgaa gactctcaaa 4801 atactgttca actgcagaag aaactatttt ttctgacatc atttcaggcg agaaaaattc 4861 ctctacaagc gcctgaacct ctgccgtttc gccatgttca tggagcaatt cgctaaattc 4921 ttcctgctct aaaatgccac tcatatttga ttccgttact ttttcaaaac tggtttcgtg 4981 gtgaaagtga cgtgctgcgc gttgtcatcg agagagcgca gaaatacagg ctctgaggcg 5041 tgcccgttcc ggtagtgacc atcgatgtat gcagtctcgt ccaaatgcgc gattaacgct 5101 ttaatggcgt cctgatattt ctctggaacc cgcatgacta ctgtcttttc gtatttggtt 5161 ttgcgtcccg caccagggcg agcgccgcca tgttggtttt tgcttgtttc tgtcatttcg 5221 atagctcttg tttgtgttac gttttcaaga tacattgaag ctattcacca tgcaacaaca 5281 ggtggttcct atgagaatcg ttctgctagt tatcacgttt atcatcccgt ttagcgccat 5341 ttttggggca gtttttagcg tgattcagtt agagaatttt gggctaatag cttcacccct 5401 ggcactgatt gcggcactcg gttacttcta ccttgaaaac caacgccaag gcgttaacgg 5461 ccaaggtaaa cggacgtaat ttcgtctcgt gtgtgcccca attcttcggt gatcagttgc 5521 cgcgcctctc ggtctgtttg ccgcatatct ggcgacattt ccctacgctc caagccacca 5581 caggccgcac attgacggcc tgttagttcc aaataacgct gctgcgcgta gccatgccgt 5641 aatccgtggg ccttgttcaa tcccatccga atacaggcgg ttttatagcg atttagctgc 5701 tcaacgtatt tcagatctgg cgggatcaaa gatccgcctc cggccagcaa ttttgcccta 5761 tccagtaacg cccgttgttc cggtgtccgg accggaatat ctcgcggccg attgcccttg 5821 gttttatcta aatgcagtac atcgccgcga tcggccacat tgggttgtaa cttcatgcac 5881 tcttcacgcc gcagcccgaa aagttgctgc aattggaaag acacctgcag ccgttcatcg 5941 caaacgagtt ttaaccgctc taaatcgagc tgagagctga gatctctatt tgacacatac 6001 tgacgggcat ctattcctaa agtatcgtta tttcgagaaa taacgccatt cttaccgatt 6061 ttctcagaca cccagcgaag atgagccatg cgatttttga ttgtgccggc actgagtcct 6121 tcttgctgcc acctgtgcaa caacgcatct acgtgccgag cgccaatatt tttgagtttg 6181 agcttcttca cgcccaattc ctgcaactgg cgatcgacca gcgcgagcgt tcggcgcctg 6241 tcagtttgag ttgcaaagga accatcacgg ttatgtttca gcacttgatt acaaccatac 6301 atgaaatctg aggccatctt ttcccacctt tttaaaacaa aaaagccctg cggttgcagg 6361 gcttattcat ggatattcaa tggtctggaa actggtcaga agaacatgat tcgattgatt 6421 agtgtaattc cgcacctgcg ttttagacac aggtatccct tgaaaaagtt acattttcaa 6481 gaaatgaaag cggtagatc //