>gi|99079842|ref|YP_611996.1| chromosomal replication initiation protein [Ruegeria sp. TM1040]
MTDDTWGLLRKRLLKTVGQNNFTTWIEPLELDQVDGGVATFHVPTNFMGNYVSQNFADLILHEFNKSGEA
VQRLAFKVAANSPTRPVQPTMSEAIEEPAPLQTTVVDQLGNQEGNTSVKSPPEDLQAAPLDPRFTFDSFV
VGKPNELAHAAARRVAEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELKERNPELNVLYLSAEQFMYRFVQ
ALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRV
KSRLQCGLVVDLHPTDYELRLGILQTKVQQNRKNYPDLKIADGVLELLAHRISTNVRVLEGALTRLFAFA
SLVGREIDMDLTQDCLADVLRASERKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVAMYLCKQL
TSRSLPEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRRSLEA
>gi|99079843|ref|YP_611997.1| DNA polymerase III subunit beta [Ruegeria sp. TM1040]
MKISIERATLLKAVAQAQSVVERRNTIPILANVLIEAEGSDVMFRATDLDIEVVDKAPAQVERAGATTVA
ATTLHEIVRKLPDGALVTLDADAASGRLTVEAGRSNFSLATLPREDFPVMATSEYHSNFTANAAMLRRLF
DKSKFAISTEETRYYLNGVYMHVATGESGGKALRCVATDGHRLARIDADLPMGAEDMPGVIVPRKTVGEL
RKLLDEDDMDIAVSVSETKVRFATPNITLTSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATV
SSERSRAVKLQLDEDRLVLSVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEIANQVDRENAVFMFNSS
GDPTLMREGSDESAVYVVMPMRV
>gi|99079844|ref|YP_611998.1| recombination protein F [Ruegeria sp. TM1040]
MSHFRSHLRADLHLDTRPVAIHGNNGAGKTNILEAVSLFSPGRGLRRASAADMARQPEALGWKLRGVLQS
SGQAYEVETSSEVGNARQVKIDNKSASQVALGRIARVVWLVPAMDRLWIEGAEGRRRFLDRIALSFDPDH
AEASLSYEKAMRERNRLLKDNVRDAAWYRVLEGQMAETGFRIHQARMDAVARLTAAQAEAETAFPVAQLQ
LVQAEGDMPASAEALREMLDAGRMRDLTVGRTLVGPHRSDLIGTFLAKGLPAKDCSTGEQKALLVSLILA
NARALQAQEGAAPILLLDEVAAHLDAGRRAALYDEICALGTQAWMTGTGPELFQELGSRAQHLTVSDRGG
TSEVTLQ
>gi|99079845|ref|YP_611999.1| lysine exporter protein LysE/YggA [Ruegeria sp. TM1040]
MSLSLWDLVIYASAVFVLFLTPGPVWLALVARAMSGGFHAGWPLALGVAIGDVVWPLVAILGVAWITAAS
AQIALVLKGVAVLVFVLMGLSTIRSAGQPISTNSRLTKPGRWAGFVAGVIVILGNPKAALFYMGILPGFF
DLSQVTSADIALICAVSMAVPLIGNVMLAGFVSQVRVLLSSPVALRRMNLGAGYLLIAVACIIPFT
>gi|99079846|ref|YP_612000.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MGRAPQRRRLETRAKLLTVAAEIIDSHGVSALRVEDVVAQAGVAKGTFFSHFGDKDGLLAVILGARVMRY
IEDMEDAPAPSSPAEIAQRLAPLLDFISQDRIIFDLLLRYSGTTGAEIEEVVTEGFLRQIALFIRWITNM
QAKGQISQNGNPELLAEGIQGFLNHVLATGFCMEHSNTPPPSKALVPYLEQWLLK
>gi|99079847|ref|YP_612001.1| NAD(P)H dehydrogenase (quinone) [Ruegeria sp. TM1040]
MSTRKILVLNGHPGQNSLNKSLADAYRRAAEAAGHELRYQDLSQMQFDMDFGEGGYHDTKPLEPALQSFV
ADLEWAEHLVVTTPLWWGAFPAKLKGLFDRALLPGQAFDTRNTNAFGVPAPMMTGKTARVMLTSDTPSWF
LRLLYGNAIKKIMSRQILGFVGIKPVRYTSFAAASHPKPGQADQWLKTVANLGRAAA
>gi|99079848|ref|YP_612002.1| DNA gyrase subunit B [Ruegeria sp. TM1040]
MSENEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADRVTVTIH
ADSSVSVSDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLELRI
WRNGKEHVARFERGDTVKHLTVVGDCGDRTGTEVRFLASTDTFSNLEYSFETLEKRLRELAFLNSGVRIV
VADERPAERLESELFYEGGVNEFVKYLDRSKTPVMDAPIYIKGEKDDIGVEIAMWWNDSYHETVLPFTNN
IPQRDGGTHVAGFRGALTRTINSYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVS
SEVRPVVESLMGEKLAEWFEENPNVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE
KDPAKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLSSQEIGNLVMALGTGIGRDE
FNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKVSRGKSEVYLKDQAAM
DDYLINQGVDGALLRLGDGSEIAGQDLTRVVDEARRLKRLLDAFPTHYPRHILEQAAIAGAFVPGAVDAD
LQGVADKVAARLDLIALEYERGWQGRITQDHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTKSLQE
IYGAPATLHRKDRQQAIYGPLDLLKAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD
MIEADDLFTKLMGDVVEPRREFIQKNALSVENLDF
>gi|99079849|ref|YP_612003.1| DNA repair protein RadC [Ruegeria sp. TM1040]
MGKSERFEEDMLPLFEGANGDSDEAPLLPIMQGRIPSYIRDHRARLRERFMSAGAIGLPDYELLELILFR
SIPRKDVKPLAHQLLASFGDLNRVVTASPERLAEVQGIGQAVICDLKIFEAAAQRMARSRVLQRQVIASW
DALLDYCHTAMAHRETEQFRVLYLDRKNILIADEEQARGTVDHVPVYPREVAKRALELNASALILVHNHP
SGDPTPSQADIGMTRKVGAALGALDITLHDHLIIGASDELSFRSEGLL
>gi|99079850|ref|YP_612004.1| chaperone DnaJ [Ruegeria sp. TM1040]
MSKRDYYEVLGVSKGASADEIKKGFRKKAKELHPDRNADNPDAEAQFKEANEAYDVLKDPERKAAYDRYG
HAAFENGMGGGGGGRAGGHPGGDFSSAFSDVFDDLFGDFMGGGGGRAGARQRATRGADLRYNLRLSLEEA
FAGLHKTINVPTSVSCTSCEGTGAEGGAEPTTCPTCSGMGKVRAQQGFFTVERTCPTCSGLGQMIKNPCK
TCNGHGRVEKDRSLSVNIPAGVETGTRIRLAGEGEAGLRGGPPGDLYIFIEVARHELFEREGNNLHCRVP
VSMAKAALGGAIEVPTIDGGRGRVQIPEGSQSGRQMRLRGKGMPALRGGGTGDMFIELAVETPVNLTPRQ
KEILKEFDEISEENTNPETRSFFSSVKSFWDGMKG
>gi|99079851|ref|YP_612005.1| molecular chaperone DnaK [Ruegeria sp. TM1040]
MSKVIGIDLGTTNSCVAIMDGSQPRVIENAEGARTTPSIVAFTDEERLVGQPAKRQAVTNPDNTIFGVKR
LIGRRFDDSDLAKDKKNLPFAVINGGNGDAWVEAKSEKYSPSQISAFILGKMKETAESYLGEEVTQAVIT
VPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAETQTIAVYDLGGGTFDVTILEIDDGLF
EVKSTNGDTFLGGEDFDMRIVNYLADEFKKEHGVDLTKDKMALQRLKEAAEKAKIELSSSSQTEINQPFI
SMDPSSGQPLHLVIKLTRAKLESLVGDLIKNSMKPCAAALKDAGLSASDIDEVVLVGGMTRMPKVIEEVT
KFFGKEPHKGVNPDEVVAMGAAIQAGVLQGDVKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQ
VFSTAEDNQNAVTIRVFQGEREMAADNKMLGQFNLEDIPPAPRGMPQIEVTFDIDANGIVSVSAKDKGTG
KEQKITIQASGGLSDEDIEKMVKDAEDNAEADKERRELIEARNQAESLIHSTEKSIEDHGDKVDPSTIEA
IELAIAALKDDLEGDKANAEKIKSGIQNVTEAAMRLGEAIYKAQAEEGGADEPSAADEDASAGPGDDDIV
DAEFEDLDDNKR
>gi|99079852|ref|YP_612006.1| DNA-N1-methyladenine dioxygenase [Ruegeria sp. TM1040]
MTRLKVRGFEIHKGFLSVQAQKELISALRPVLRAAPLFSPEVPGGGQMSVRMTSAGEYGWFSDPSGYRYE
GKHPSGRKWPEIPSEVLNVWTTLVDRERLPDCCLFNYYGEGARMGLHQDKDEADFSFPVVSISLGDDGLL
RLGGTSRKEKTQTVWLNSGDVVVMGGEARLAYHGIDRIRFRSSRLLPKGGRVNLTLRVVT
>gi|99079853|ref|YP_612007.1| ABC transporter, permease protein [Ruegeria sp. TM1040]
MDQQEIHVRISHLLLNSEAMFRYRTDKSPLSRAITLSEVVFHSVVRSVRSKHNNAFMALGINIIQSVLFV
MFFYFMFTVMGIKGAAIRGDFLLYMMSGVFLFMTHTKTVGAVVGAEGASSPMMQHAPMNTTIAILSAALG
ALYLQVLSMLIILFAYHVAFTPIHIEEPVPAFGMLLLAWASGAAIGLVLYVLKPWMPSAIGIISTIYQRS
NMLFSGKMVLANTLPGYMLPMFIWNPLFHTIDQARGYIFINYNPHVTWWEYTMWLALIFLVLGLMGEFYT
RRAVSLSWGARR
>gi|99079854|ref|YP_612008.1| 3'(2'),5'-bisphosphate nucleotidase [Ruegeria sp. TM1040]
MNYDDLVVVMRRLALEAGDKIMEIYNSDDFDVKQKSDDSPVTVADEAADALISAGLRSAFPDVMLVTEEQ
AESHSATGDTFLIVDPLDGTKEFINRRGDFTVNIAYVEAGVPTRGVVYAPARDRMFYTLADGSAVEEKGP
FSKNEVGETTALKVAESDNSALLVVASKSHRDQATDDYINKYSVKDTRSAGSSLKFCLVATGEADLYPRV
GRTMEWDTAAGHAVLSGAGGRVVRFDDHNPLRYGKDGFANPFFIAHAPAVELKDA
>gi|99079855|ref|YP_612009.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Ruegeria sp. TM1040]
MSVLIVIPARYASTRFPGKPLAELTGATGKTRSLIERSWRAACAVNGVDRVVVATDDDRIKAASETFGAE
VVMTSETCANGTERCAEAHAALGGGYEVVVNLQGDAPLTPPWFIEDLINGLQAAEGMGLATPVLRCDGAT
LNSLLEDRRAGRVGGTTAVFGADHSALYFSKEVIPFQSGRYSDAECTPVFHHVGVYAYRPDALLAYPTWP
VGPLETLEGLEQLRFLENGRKILCVEVDARGREFWELNNPEDRPKIEEMMRKMGVE
>gi|99079856|ref|YP_612010.1| UDP-glucose pyrophosphorylase [Ruegeria sp. TM1040]
MPRKVTKAIFPVAGLGTRFLPATKSVPKEIMTLVDRPLVQYAIDEARAAGIKEFIFVTSRGKGALEDYFD
HAPVLEQELRKKGKDQLLEVLKATNMGSGDIAYIRQHKALGLGHAVWCARRLIGDEPFAVMLPDDVIAAD
KPCLQQMVEAYAETGGNMVAAMEVAPEKTSSYGILDVKDSKDAVMPINAMIEKPSPEEAPSNLAVIGRYI
LSPSVLQNLNKRKQGAGGEIQLTDAIAEDIARDVPVCGYRFKGRRFDCGSKSGFLQATVAFALEREELRD
DLMEYLSTLSAHRQAAE
>gi|99079857|ref|YP_612011.1| UDP-galactose 4-epimerase [Ruegeria sp. TM1040]
MANVLVTGGAGYIGSHACKALKQAGYTPVTYDNLVTGWQDAVKFGPFEQGDLTDRGRLDEVFAQYKPVAV
MHFAALSQVGEAMSEPGRYWANNVGGSLCLIEAAVAAGCLDFVFSSTCATYGEHDNVVLDENTPQQPLNA
YGASKRAVEDILKDFEAAHGLRSVIFRYFNVAGADPEAEVGEFHQPETHLVPLMIQAIKGERAALTVFGT
DYDTPDGTCIRDYVHVCDLVDAHILGLKWLEDGKGSRVFNLGTGTGFSVKEVLSHSHAVTNTEVPHVIGP
RRAGDCTKLVSGSVRAGEELGWEPKRSTMDQMISDAWRWHQSGHYER
>gi|99079858|ref|YP_612012.1| hypothetical protein TM1040_0017 [Ruegeria sp. TM1040]
MPKISLMAAYRLRLKRRRCLWRAYRARRQLRCIVDNTINIGRDDILVVVVLRNEAQRLPYFLEYYRRLGA
AHFLVVDNTSEDGSLALLQREARRGDLSLWQTHDSYRASRFGIDWSGWLLMQHGSGHWCLTVDADELLVY
PGMDQMDLPMLTQRLDQIGLEGFGALMLDLYPKGPLGTQEYRVGQDPTEVLRWFDASPYHAVRQAPQGNL
WLQGGARARMFFADTPERAPTLNKIPLMRWHWRYAYTNATHALLPPRLNAIYGGTEGQAPSGVLLHTKFL
PEIVSKSKQERSRAEHFHNPTLFEGYYAQIETKPDFWHPDSQEYHSPEQLAELGLCRGFDARTTVAGGQR
NQF
>gi|99079859|ref|YP_612013.1| hypothetical protein TM1040_0018 [Ruegeria sp. TM1040]
MRIRRKRRILRALRKSRNLHCVQNNTSRIRPGDILLVCTFRNEQVRLPYFLQYYRSLGVNHFLFIDNGST
DGAQGYLAGLQDVSVWNAQGSYKRATFGVDWANALLRKYGHGHWCLVVDADELFVYPFCDTRPIRALTDW
LDSSQIRSFSAMLLDMYPKGRVDEVPYKPGQDPLEITQWFDSGNYSITRNKRYGNLWIQGGPRARVFFAD
RPKLAPALNKIPLVKWDRRYAYVSSTHMLLPRGLNQVYEINGGEKASGILMHTKFLDTFPAKAEEELKRR
EHYAGSVEYQAYVKEAESSPELWCKWSEKYINWRQLEILGLMSKGNWA
>gi|99079860|ref|YP_612014.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MSNVGVIMLVHTALERAEQVVRHWTAAGCPVVLHVDRQVSKQVFQEFCARLKDDPLVRFSRRHRCEWGTW
GIVAASQSASELMLSEFPDVSHIYLTSGSCLPLRPVKELQTYLAARPDIDFIESATTSDVPWIVGGLSTE
RFTMRFPFSWKRHRKLFDRYVRLQRKLKLRRRIPAGLVPHMGSQWWCLTRRTLTAILTDADRARYDAYFR
HVWIPDESYYQTLARLHSDNIESRSLTLSKFDYQGKPHVFYDDHLQLLRRSDCFVARKIWPHAERLYQAF
LCPSATDINRTEPNPGKIDRIFAKAVERRIRGRKGLYMQSRFPAKGVESQQTCGPYSVFQGFSELFEDFE
SWLARATGARVHGHLFAPERAEFAGEQRLFNGCLSDSALLRDRNPQSFLSNLIWNTRGERQCFQFGPHDT
QSINWFIAQDSNAQISVISGAWSVSLFKTNRSFSDLRREAAKLQRIEAEHLKILRGRWTHARIRVWSMAE
FIEAPMENLQTIVDEIGPMSRSHILEAPQMVDLTGFGQFLQNLKNQGMHPYLMGDFPARSAPKQPMRQAR
KTYIVK
>gi|99079861|ref|YP_612015.1| hypothetical protein TM1040_0020 [Ruegeria sp. TM1040]
MSADFTSFVVLAEMRTGSNFLEANLNALRGVSCLGEAFNPHFIGYPNQESIFEVSREARDDDPHALVDAI
HAAEGLCGFRYFHDHDPRILERILNDPQVAKIILTRNPLDSYVSWKIARTTGQWKLTNVKRRKEAKAVFD
AEEFGAHVDGLQEFQIAVLNQLQRTGQTAFYVAYEDLQSLEVMNGLATWLGVDARLDALDDSLKRQNPAP
VIAKVENPEEMTEALAGMDRFNLTRTPNFEPRRGPAVPGYVAGVVTPILYMPVRNGLEAHVSEWIGGLDK
VPAEGLITGMNQKQLRQWRHANPGHRSFTVVRHPLARAHHVFCTKILPNGPGSMKHIRNTLRRQFHLDIP
QDGIDVGYSRERHRQAFEQFLTFLKSNLAGQTAIRVDARWASQAQSISGFAELGAPDLILREEDLATDLP
WLARKLGRMSPAEVPPVPADQPIALAEIYDDALEVLCRSIYTRDYLTFGFDSWSPRIER
>gi|99079862|ref|YP_612016.1| PTS IIA-like nitrogen-regulatory protein PtsN [Ruegeria sp. TM1040]
MQISNILTQEAVRVIGAASSKKRLFQEVAEVAQTAYGLKASLTVEALLDRESLGPTGVGHGVALPHARLS
GIDRVVGVYVSLEKPLDFGAVDRQPVDIVFALLAPVDAGVEHLKALALVSRTLREQSFCTKLRANPDTAT
LYTILTESQSVQAA
>gi|99079863|ref|YP_612017.1| SSU ribosomal protein S30P / sigma 54 modulation protein [Ruegeria sp. TM1040]
MRYKVSGKQIDIGESLQTHVETELSAVLEKYAGRPTDAQVVFSRNAHEFVCEAIVHLSTGLTCQAKAHAT
EIYASFESCLEKMDKQLRRYKRRLKDHHRDRAEPVELMGASSYILASEEAESDQEPDSLQPIIVAEMETK
IPSLSVGEAVMQMELAGSPVLVFRNEGKDGLNVVYRREDGNIGWIDP
>gi|99079864|ref|YP_612018.1| hypothetical protein TM1040_0023 [Ruegeria sp. TM1040]
MQCAETGIPKAGSKRRLLRFAHVPYFNSMPNPGRSQWNSDCIFKCGTTYRRAPANHSARKGYAHAYAPAL
QDWL
>gi|99079865|ref|YP_612019.1| ABC transporter related [Ruegeria sp. TM1040]
MAKPKLEVTSGSSGLRIEKMRKSYRKRVVIRDVSMELNRGEVVALLGPNGSGKTTSFYTIAGLVFPEAGR
VTLDGQNVTSLPMYRRARLGIGYLPQEMSIFRGLSVEDNISAVLDIAVSDDHKRRERLEELLSDFSIEHL
RRAPALALSGGERRRVEIARCLAADPKYLLLDEPFAGVDPISVGDIRNLVADLKNRGIGVLITDHNVRET
LEIVDRAYILHDGQVLMSGSPSEVVENENVRRVYLGDNFRIS
>gi|99079866|ref|YP_612020.1| OstA-like protein [Ruegeria sp. TM1040]
MAQGTGVSFGVLQTDTSQPVDIASDNMSVNQEDGSALLTGNVLIIQGEMRLSADNVLVVRRTEGNGIERL
EARGNVLLVSGEDAAEAREADYTIQSGTVVMRGNVLLTQQGSTLGAEQMTVNMTTGNATLSGRVRTTLPG
SGGN
>gi|99079867|ref|YP_612021.1| hypothetical protein TM1040_0026 [Ruegeria sp. TM1040]
MDRYSRVVSYLKVALPLTALALLSTLFLISHNINTDPSIPFAEIELENRLRGQQVTAPFFTGTTATGQEI
TIAATKALPGGDGEGASASDLEAEILTTEGRRILLLSDRGSIRPDQDLAVLVGNVRIITADGTRVESERL
NAELSGLQVVSPGPVTAQGPMGDFSAGTMRIFTDSKNAPVHIEFTEGVKLVYDPAKIER
>gi|99079868|ref|YP_612022.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
MATHLYQHDLPNSLDLGPVVAIDCETMGLNPHRDRLCVVQMSSGDGDAHLVQIAKGQTDAPNLTAMLTNP
DVLKLFHYGRFDIAALYHRFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQDLLGQDISKQQQMSDWGAE
TLTRAQMDYAASDVLHLHRLRDALDQRLVREGRSDLAQACFDFLPTRARLDLAGWPDTDIFAHS
>gi|99079869|ref|YP_612023.1| xylulokinase [Ruegeria sp. TM1040]
MFLGLDVGTSGLRALLADEGGNVIGVADAAYGVSHPKTGWSEQDPQDWITACQSAVAELRGEHPEAISAL
RGIGLSGHMHGATLLDVDGKVLRPCILWNDTRSATEAAELDGTEGVRDLSGNIVFPGFTAPKLAWVKTHE
PDIYAQIAKVLLPKDYLRFWLTGSYISDMSDSAGTSWLDVGARDWSPTLLEASGMRRDQMPDLVEGSAAG
GELRADLRADWGIKGSVVVAGGGGDNAVAACGAGCFREGEGFVSLGTSGVLLAAKSAYKPDPASAVHTFC
HAVPQTWYQMGVILAATDCLNWLSRTLGQTPATLAGRLPNEVKGPSSITFLPYLSGERTPHNDAQIRATL
AGLDIGDGPAELTQAVMEGVAFALRDCLEALKGTDTSFTRLLAVGGGTRSPYWVETLATVLGVSLDIPDK
GEFGAALGAARLAMTATGADLATVMRAPPISHTIDPRSDLIEAYDTSYARYRALYPNMKALMT
>gi|99079870|ref|YP_612024.1| xylose isomerase [Ruegeria sp. TM1040]
MTTGFFGDVSKITFEGADSTNPLAFRHYNPDEVILGKRMEEHLRFATCYWHNFVWPGGDPFGGQTFDRPW
FKDTMHAAKLKADVAFEMFTLLQSPYYCFHDADVRPEGANFAENTRNLNEIVDYFAQKQEETGVKLLWGT
ANLFSNARYMSGASTNPDPDVFAFSAATIKTCMDATHRLGGENYVLWGGREGYETLLNTDLAQEDQQMGR
MLNMVVEYKHKIGFKGAILVEPKPQEPSKHQYDYDAATVYGFLKRHGLENEVKLNLEQGHAILAGHSFEH
EIATAQALGIFGSIDMNRNDYQSGWDTDQFPNNTPEVALAYYHILKHGGFTTGGTNFDAKLRRQSIDAED
LLMAHIGGMDICARGFKAAAAMIEDGTLDQFVTDRYAGWQTDPAQDMLAGKLSLDEIAKRVEAEDINPKP
RSGRQEYLENLINRFV
>gi|99079871|ref|YP_612025.1| aldose 1-epimerase [Ruegeria sp. TM1040]
MKDAQIVEHGLHRGHTLKEARLQSAGLSISLLNFGAVTRDLRLLEENRPLILGFQDPADYLLNPGYLGVI
AGRVAGRIKNARFTLGRQRFQLNPNEGDTLLHGGANGLCHVFWNLEVLSENTARLRYHSPEGEGGFPGAA
EITLTVMLEAQAVVYDLTAEVTAPTPFSLAQHNYYNLMGGAQSIREHRLQVDATSYLGLDDANVPDGRLL
ALDGCHHDFRLGRSFAELDPQTKGSDVAVVFDECRDPEQPVASLIAPDGLQMRVISDQPCAQIYTASALP
EQPGALPGQRIGSDMGVCIEPQGYANAVNLPQFPSMIATPERPYRQRLRLEFGRI
>gi|99079872|ref|YP_612026.1| methylamine utilization protein MauG, putative [Ruegeria sp. TM1040]
MRWFILLTLMGASATQAQSRPDLGPRPAFPAPDMAAVELGQLLFYDPILSGNRNIACSTCHHPRLGTGDG
LSLGLGEGGIGLGPDRKPDPANLPEQRIPRNAPGLWNLGAPEFTVMFHDGRLEDHPDHPGGIRTPLGEDM
VAGFDDALAAQAMFPVLSADEMAGHYSENEVAQAVRLGQLSTPGGAWDRIAARVEAIPAYRVAFDEVLGE
GTPITFADIGNVLADFIRFEWRADMSPFDAYMLGQGDLPKAAKRGMELFYGAADCSQCHTGWFQTDHGFH
ALAVPQIGPGKAARFETHSRDEGRIRVTGRAEDAFAFRTPSLRNVGQTAPYGHSGAFATLEDIVWHHLSP
EQSLSSYSKSQAVLPQLEGAQDWTIQDNAAERAALIAAVDLDPVSLTAAEVADIVAFLHALTDEEAAKGR
LGVPAEVPSGLPVDQ
>gi|99079873|ref|YP_612027.1| phospholipase D/transphosphatidylase [Ruegeria sp. TM1040]
MMRFLKTLALIGLTLAAFVMLARLLFPLPDISNREISSALPASDQTSIGATVADLNAAHVGQSGIIPLRS
GTDALASRVELIRRAEASIDAQYYIWHDDTSGVLLLEELRNAALRGVRVRLLLDDNGVPGLDATMATLNA
QPNFEIRLFNPSTIRRPKLLGYSFDFFRMNRRMHNKSLIVDGAVAIIGGRNIGDEYFDVQRDAFYIDMDA
LAAGKVVPETATVFDDYWNSASVFALETIVSSDGNLITFDQRVSEVMATPEAQRLMGDLQSSADKFARGE
MPMEWTNVRVVADDPVKGQGSATSDQLMISRLGEILGQVETRLDLVSAYFVPGQRGTEYLTDLAAAGVDV
RVLTNAMNTTDVLMVHSGYTRYRRALLEADVSLYELKLRAQMSADANRQLKPFGLSGASLHAKTFAVDGD
RVFIGSFNFDPRSATLNCEMGFLIESPTLAGQVSAGFDGPLLTVSYQPALTPKGKMIWREPIEDGETLIY
QEEPGATWFQQIAIAVIGVLPVEWLL
>gi|99079874|ref|YP_612028.1| sodium/hydrogen exchanger [Ruegeria sp. TM1040]
MTFLILLVLLAFALYSLFSKRIDRSVLTLPILFTGLGFLLSKPLSEVIPAGLIHEGKAGLAEVTLILVLF
SDASHVRLRSLARGWQYPTRMLVIGLPLTIASGTAVAFWLNPSSGLAVALLTAAVLTPTDAALGQAVVNS
PDVPDRLAQTINVESGLNDGLVLPFVLTGAILASGFAGEAHTAGLALEALIEVILGPLAGIAVGWVAARA
MDWAQNRDLMQEAAGAVVFLVTAFAAYLFAVLIHGNGFIAAFVAGMVFGNSYRHNIHFISEFMEGAGQLL
TMAAFLVFGAFLLPDGLAHAGVSTLVLALLFLTVVRMGPILLSLIGSGLPTREKLFLGWFGPRGLASILF
TLLMMDQFDIPNEEELLACVSLTVGLSILLHGITSTPLASWISQEGKRNT
>gi|99079875|ref|YP_612029.1| ABC transporter related [Ruegeria sp. TM1040]
MRTAIDIKGLNVYFGDSHNLFHAVKNASFSVDSGASFGLVGESGSGKSTILKAITGLAPYWEGEMTVAGH
PLAGKRDRTFYKTVQMVFQDPYASLHPRQSVDQVLSETLRLHGFKDINDRVDQLLKDVGLGPAFRFRYPH
QLSGGQRQRVAIARALAPNPKILLLDEPTSALDVSVQAEILNLLKDLQAEHDLTYVMVSHDLAVVAHMCS
TAAVMRNGEIMEILSIDDMRAGKTAHDYTQHLLNASANRVASVETA
>gi|99079876|ref|YP_612030.1| ABC transporter related [Ruegeria sp. TM1040]
MSTLLDIENLWVKFPTRNGIFDAVRGVSFSLGKERLGIVGESGSGKSMTGRAILRLIRKPGIVEAGHIKL
HDTNLLDLSERDMRKVRGEKISMVMQDPKFSLNPVVTVGDQIIEAYRLHAKSSRAEARSKALEMLEAVSI
RDPERVMKAYPHEMSGGMGQRIMIAMMLIPNPEILIADEPTSALDVSVQGQVLSIMDKLVRERGMGLIFI
SHDLNLVSQFCDRVLIMYAGRIIEVCDADKLHEAKHPYTQGLLGSLPRFDHPKPRLQVLDRDPQWRDTAS
VEGRP
>gi|99079877|ref|YP_612031.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSSQTMTLREWLLTDTPTSRRQARLAAYYKGWLTLRSNHMAMGGLAIIVLLVAVAIFAPLLAPHDPYYQD
LGNRLQPLGTEGHILGTDSLGRDILSRLIWGARITLYIVALVAMIAPIVGLLVGTVSGYVGGWVDIMLMR
VTDIFLAFPRLVLALAFVAALGAGIENAVLAISLTAWPPYARLARAETLTIRSSDFISAIRLQGAGPLLI
ITKHIWPLCISSLIVRVTLDMAGIILAAAGLGFLGLGAQPPSPEWGAMISEGRRFILDYWWVATMPGLAI
FAVSLAFNLLGDGLRDVLDPKDSSS
>gi|99079878|ref|YP_612032.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MAFYSNVPKRQPWLPLPPWARSMGITLLSVSITMLGLLFVTFLIGRVMPIDPVLAVVGERASEEQYNAVY
LELGLDKQLIIQFFYYVGDVLQGDFGKSLLTARPVSEDIARVFPATFELATIGIIFGCVLGVPLGVIAAV
RRGSWVDQIARVVALVGYSMPIFWLGLMGLLLFYGMLGWVGGPGRQGIFYEDMIPSVTGMILVDSIIAGD
WGAFWDAFSHIILPASLLGYYSLAYISRMTRSFMLEQLSAEYITTARVKGMSEWAVVMNHAFKNIRVQLI
TVIALSYANLLEGSVLTEIIFSWPGIGNYITTALLSADMNAVLGGTVVVGLVFIVLNVFSDLLYKVFDPR
SK
>gi|99079879|ref|YP_612033.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MNAFSKLIGSAALGLALGVTALPAVAATPDNMLVIANRIDDITTLDPAQSFEFAGADVIRNMYGKLVNFD
PSNLEAGYQPDLAESWTVSEDGKTITFTMREGVKFHSGNPVRAEDAAFSLRRVIKLNKTPSFILTQFGFT
PENVDEMITVDGNTVSITTDKRYATSFVLNCLTATLGAIVDEKLVMEHDKDGDLGNEWLMTNSAGSGPYK
LASWKPKESVTLTANPDYYEGAPAMQRVIVRHVQESATQRLMLERGDIDVARDLTPADVDGLAGIDGVEV
QREMRGRLMYVSFNQKHPELSKPQVRQALKYLIDYDGMENSFLKNWYVKHQNFLPKTYLGAVDENPFSLN
IEKAKELLAEAGVPEGLELTVGVREAQERLEIAQSLQNTFSQAGIKLNLEVGTGKQVLGKYRARELDIYL
GAWGPDYPDPQTNAGTFAYNPDNSDAANATGLLAWRNGWDTAGLTDKVAAAVVEGDTVKRADMYHEIQAE
FRDTAPFAVMFQLVEQAGISEKVEGLNLGGAITAAAYWDVTK
>gi|99079880|ref|YP_612034.1| dipeptidase AC [Ruegeria sp. TM1040]
MNTPLIFDGHNDLLLRLHNKDVGMDQAGVFGSGGRQIDVDKAKAGGFGGGFFAIFVPGEESVSHDEEMMK
DTYDLPLPEQVTWHNAIKVALSQAALLIELERQGALQICRSTAEIRTAMEQGLMAAVMHMEGAEAIDRDF
HTLDVLHGAGLRSLGPVWSRPTRFGHGVPFRYPSTGDTGEGLTEDGFRLIKRCNEMRIMIDLSHMTEAGF
WDVARVSDAPLVATHSNAVALTRHSRNLTDRQLHAIRDSDGMVGLNFAVAFLREDGRMDENTPISRMLDH
LDYLIAEVGEDRVGMGSDFDGATVPAEIGTIAGLPALRRAMRDRGYDDALMKKLCHENWLRVLGKTWGE
>gi|99079881|ref|YP_612035.1| alcohol dehydrogenase GroES-like protein [Ruegeria sp. TM1040]
MKAVLYETFKELPKLVTVEDPTPDPDGVVIKVEATGLCRSDWHGWMGHDSDIVLPHVPGHEFAGVIVALG
KNVRNWTVGDRVTVPFISGCGACSECHAGHQQVCHNQQQPGFTHWGSFAEYVGVRQADLNLVALPQEMDF
ATAASLGCRFATSFRAVVDQAQTRAGQWVAVHGCGGVGLSAVMIAQAVGANVIAIDIDDEKLNLAQELGA
VATINGARVADVPEAVIDLSRGGAHVSLDALGHPLTCFNSIQNLRPRGKHVQVGLMLAEHSTPSVPMAKV
IAKELEILGSHGMQAHRYDAMLDMIASGKLDPRRLVGREISLDAAPSALVKMDQFQSIGATVITTF
>gi|99079882|ref|YP_612036.1| HI0933-like protein [Ruegeria sp. TM1040]
MQDWDAVVIGGGPAGLMAAGEVARQGHRVLLVEAKPSPARKFLMAGKSGLNLTKDEPFEDLLAQYGDSAE
WLAPMIKAFDAAAVQDWARGLGQELFTGSTGRVFPTVMKGSPLLRAWLQDLDTHRVTRQLGWRWTGWQQD
GQLLFGTAAGPQIVTSRATILALGGASWARLGSDGAWAALLASRGVALAPFQPSNAALSVAWSDHMTPHF
GAALKAVAWQAGALQARGEATLSQRGLEGGGLYTLTPALREGQPLFVDLSPDLNEGDLARRLAKPRGKTS
WSNHMRRTLKLATVKMALLQEFGRPLPQDPESLARLIKHLPVRHTGLRPMDEAISTAGGVRRDALDDGLM
LKAIPGTFCAGEMLDWDAPTGGYLLTACFATGRWAGQAAARYLASSATR
>gi|99079883|ref|YP_612037.1| glutathione S-transferase-like [Ruegeria sp. TM1040]
MYQVIGVPKTRAFRVLWTLEELGQSYDLVPAQPQSAEARAANPSGKVPALVEDGESITDSVAIITYLADK
HGALTAPAGTLARARQDAITNMVIDEMDAILWTAARHSFILPEDRRVPEIKDSLRWEFANSIKRINAQLS
GEFVAGDQFTIADVLMTHCLNWARGAKFDVEGDAVLDYGKRMRARPAFQRVAELAK
>gi|99079884|ref|YP_612038.1| DNA polymerase III, delta subunit [Ruegeria sp. TM1040]
MKLSPREAEGYFARPDPGKTGLLIYGADAMRVSLKRQQMLAALLGPGAEEEMRLTRMPASELRKDPAQLL
DAVKAVGFFPGIRAVFVEDANDSATPAITTALEAWQPGDAQIVVTAGQLKASSKLRKAFETHTNAYATGI
YDDPPSRAEIERILSEAGVRDVPGDSMSALADIANDIGPGDFSRMIEKLSLYKNGDNSPLTLEDIDAVAP
QSTEAALDDLLNVVAEGRSADIGPVLRRLQAQGTNAVTLCIGATRHFRTLYTIAAHPGGAAQGIGGLRPP
LYGKRRDRMLRQAQGWGAQKLQNALTILTDTDLQLRSAGQSAPALALTERAMIRLAMLARAR
>gi|99079885|ref|YP_612039.1| putative lipoprotein [Ruegeria sp. TM1040]
MLLPDRRKFLKLTLALPLGASLSACGFEPVYGPVGAGTALRDQIAFQSPETIGAPRDSDAYYFVRRLETR
LGRSGAPAYRMDLTLDTKEVGQAITAEGSITRYSLTGTAGYSLVRLSDGQIVASGEVENFSGYSASGTTV
QTQAGETDAHERLMVILADQIVTRLYAAPGLGRPEGS
>gi|99079886|ref|YP_612040.1| leucyl-tRNA synthetase [Ruegeria sp. TM1040]
MSRYEASDIEARWQKAWEEAAIFQAKEDHSKPKYYVLEMFPYPSGKLHMGHVRNYTMGDVIARYKLSTGH
NVLHPMGFDAFGMPAENAAMASGGHPKDWTYSNIDTMVEQMKPLGLSLDWSRMFATCDPEYYGQQQALFL
DFLEKGLVYRKNAVVNWDPVDMTVLANEQVENGRGWRSGALVERRELTQWFFKISDYSDELLEALDGLEN
WPAKVRLMQENWIGKSRGLQFSFERTDGEEAIEVYTTRPDTLMGASFVGISPDHPIAKKLEAESQEVADF
VAECRKGGTTEEAIETAEKLGYDTGLRVKHPLDPNWELPVWIANFILMDYGTGAIFACPAHDQRDFEFAT
KYNLPIIPVLEPVEGAGELTEAYVPTKAEKVRYVRGFAGDELQTGEEGVNTAVDKAEAEGWGQGVTKFRL
RDWGLSRQRYWGCPIPVVHCPDCGVVPEKKENLPIALPYDEDGKAIDFSVPGNPLDRHPSWRNCACPNCG
KPAQRETDTMDTFVDSSWYFARFTAPRAETPTDLDAANYWMNVDQYIGGIEHAILHLLYSRFFARAMQIC
GHLPESAKEPFDALFTQGMVTHAIYENAERKDDNGRAIYHYPSEVEERDGGVFVKETGERIKVIPSAKMS
KSKNNVVDPLAIISTYGADTARWFVLSDSPPERDVEWTASGAEAAYKHLNRVWNLCDRIGEMDPDAKGEG
DEELLREMHKAIRDVTLGVESFGFNAAIAKLYGFTNTLSKSKASAAVQKQAIKTLAQLMSPMTPHLAEDI
WAHQGGEGLIANAAWPVADESMLVEDSVTLPIQVNGKRRGEITVAKDLDKAEVEKLALAHEAVQRVLEGA
APKKVIVVPGRIVNVVA
>gi|99079887|ref|YP_612041.1| hypothetical protein TM1040_0046 [Ruegeria sp. TM1040]
MRGIKTFFLLSALAVTASCGAFRSLDTSTEVNDTDTIVLAGEGREANDDKTTIWEAFGPRKSEQRVQVNR
YLWAASLEVLDFLPVQSVDPFTGVIITGYGTPPGGGRAYRATIHIKDPALEARALNVALQSRGGAVSSAT
ARAVEDAILSRARQLRMADKKI
>gi|99079888|ref|YP_612042.1| outer membrane porin [Ruegeria sp. TM1040]
MKKILFASTALVATAGVAAAELTIGGSARFGLAYDESQTEETRIEQRMRVNITGIAETDAGVKLEARFRL
EANEDSHANDISGRGPGAAGFAVSYGGLRVDVGNVSNVLDSGDQVDYYGYGVGFTSFLEHNANFNGPATG
FGAGSQDATTIKARYNVGDFSASLSYKETRAQAAVANAPGVLGSTAVAADEEWQLGLGYTLANGMAIGAV
YSDTDSSGDYWVIGLNGTAGAVGYSVIVGDGDNQADASFGASINYEVSSATSIRAVVSDGGAANADTSYG
LGFRHGLGGGVTLAGGVGSKNDNTLADLGVSFSF
>gi|99079889|ref|YP_612043.1| hypothetical protein TM1040_0048 [Ruegeria sp. TM1040]
MSLSEIKSRIAAAESAAGRVPGSVELIAVSKVQPNERVEAVLEEGHRCFGENRVQEAAGKWPQFREKFTG
VDLHLIGPLQTNKARQAMELVNVIHSVDRPKLANALARLAQELGHCPDLFIQVNTGEEEQKAGILPQDAD
GFVAECRKLDLPIKGLMCIPPVDEEPSLHFALLAKMAERNGLNGLSMGMSGDFESAIALGATHVRVGSAI
FGARAYSA
>gi|99079890|ref|YP_612044.1| hypothetical protein TM1040_0049 [Ruegeria sp. TM1040]
MGRLLPCTIGKGGLSTAKREGDGATPVGTHHISGMLYRPDRISAPQDWARPILPGDLWSDDTQARDYNQM
VRAPYPFSHERLRRADPLYDLVLLTDWNWPNATSGRGSAIFLHQWRRPGYPTEGCIAFSRQNLRWIAERL
RPGAQLIVGSR
>gi|99079891|ref|YP_612045.1| GTP cyclohydrolase II [Ruegeria sp. TM1040]
MSLMPTMLERIARARVDLRMGLPVILTTGESAILAISVESLSPERLTDLRSLGPVTLALTARRAATLKAR
VYDNDIARVTVPSDAGLAWVQALADPADDLETPMKGPLLSEREGDASLPRLAIAMVKSARLLPATAYVAL
ENAGDFALKHDLTLLPQSAAEPLLNTSSPLHPVAAARLPMEASEAGRLHIFRPEDGGEEHYAIEIGRPDR
SQPVLARLHSACFTGDVLGSLKCDCGPQLRGALSHMGQEGAGILLYLNQEGRGIGLANKMRAYSLQDQGF
DTVEANHRLGFEDDERDFRLGASILRELGFSSVRLMTNNPGKIAMMEKTGISVVERVPLKVGENAFNRHY
LATKAAKSGHML
>gi|99079892|ref|YP_612046.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MAQLKKILLVDDDEDLREALSEQLVMTEDFDVFEAGDGQGAMERAKEAIYDLIILDVGLPDTDGRELCRL
MRKQGVKSPILMLTGHDSDADTILGLDAGANDYVTKPFKFPVLLARIRAQLRQHEQSEDAVFVLGPYTFK
PAMKILITEDERKIRLTEKETNILKFLYRSNNGVVPRDVLLHEVWGYNAGVTTHTLETHIYRLRQKIEPD
PSNARLLVTESGGYRLVA
>gi|99079893|ref|YP_612047.1| gamma-butyrobetaine,2-oxoglutarate dioxygenase [Ruegeria sp. TM1040]
MTGGHHRVVPLCAKAQTALTHDISNARRFLMAQAALQPQNACVLLSFSDGTTAQYPYIWLRDNDPEGFHP
DTQERITDLSAISPDITVADVELNDSQLLIHWEGADSATSRFDLDWLRSYVPGTRTADPARTGFQHWRCD
LGAGGIPRATAQEILSSDLALRTWLEQTQIYGISIVEGLADSTEAGMDVARRIGFLRQTNFGVTFEVKSK
PNPNNLAYTPIALPLHTDLTNQELPPGFQFLHCLANEARGGGSLFCDGYAIAEDLRRDDPESFELLSTVS
VPFRFHDQDTDIRNRKKVITLDEDGRVIEICFNAHLADIFDLEPALMQRYYRAYRKFMILTRSTNYLVTL
KLKGGEMVVFDNRRVLHGREAFDPQTGYRHLHGCYVDRGEFESRLRVLHRGQ
>gi|99079894|ref|YP_612048.1| exodeoxyribonuclease III [Ruegeria sp. TM1040]
MSFTLATWNINSVRLREPIVVKLLEEEGPDVLCLQECKSPVDKIPMEAFRALGYEHMIARGQKGYNGVAI
LSRLPIEDVGDKDFASLGHARHVAGRLENGVTIHNFYVPAGGDEPDREKNVKFGQKLDYLTEMRDWFHAE
RPEKSVLVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEHLDQVMDAGGWADVTRKDIPEGQLYSWWSYRA
KDWDAADKGRRLDHVWTTADITNAAHSSRILRHARGWEKPSDHAPVFATFDL
>gi|99079895|ref|YP_612049.1| thioredoxin domain-containing protein [Ruegeria sp. TM1040]
MMDILGGGASAAPAGDLIKDVTEETFMADVVEASMDVPVVVDFWAPWCGPCKTLGPMLEAAVTKAKGAVK
MAKINVDENQRLAAALAQQGLPLQSIPTVVGFYQGRPVDMFQGALPQSEIEAFLQKMAEAAGSTADGGLG
EALETAEQMLEEGAAADAAQVFAAILGEDDKNAAAYSGLARCHVAMGELDQAEAVLNGAPAEISTAAEIE
AAHAQIELARQAENAGPVAELRAAVDANPDDHQARFDLAQALHAAGDAEAAVTELLELFRRDREWNEGAA
KAQLFTIFEALKPNDPVVLNGRRKLSSMIFA
>gi|99079896|ref|YP_612050.1| peptidase S16, lon-like [Ruegeria sp. TM1040]
MIKAADLPDTIPVFPLPGALLLPRAKLPLHIFEPRYLQMLEDVLKTPNRVIGMIQPSHARNADGSGLHAI
GCAGRVTQFSETEDGRYFITLSGLSRFRVKEEIEGFTPYRRCAVDWAGFDMDLGPAECDDGFDRTALMGL
LGRYLDARGMSTDWGALDEAGDELLVNSLSMLLDFEPEDKQALLEAPSLSTRRETLVTLMEFALRGGSLE
EKLQ
>gi|99079897|ref|YP_612051.1| hypothetical protein TM1040_0056 [Ruegeria sp. TM1040]
MNETTPAFDRHMLEALVCPVTQTVLEYDAEAQELVSRAANLAFPIRNGIPVMLTDEARPLE
>gi|99079898|ref|YP_612052.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase [Ruegeria sp. TM1040]
MTDTRDILIVGGGLNGPSLALALAQAGHSVTLIDALPAPLREDAEFDGRSYALALASTRLLQQIGIWAVI
EDHAQPMNEIKVSDGVAGRGPSPLFLHFEESDLDEGPMGYMVEDRYLRRALLKALEAEPKITQISGQPVI
AQTVSADAITVTLEDGTQLSGALLVGADGRQSGTAARAGIKRTGWDYGQTALVCAISHAQPHNGIAHQFF
MPPGPLAILPLPGNRSSIVWSETHAEAARIQALSDQDYLSVLRPRFGSFLGEIDLEGKRFSYPLKLSLAN
AFYGERLALVGDAAHGLHPIAGQGLNAGLRDIASLAEVLTDAARRGEDLASPLVLARYQQWRRFDTTSLA
LATDVFNKLFSNDNPILRATRDLGLGLTNALPGLRRGFVREAAGLSGDLPRLLRGRPL
>gi|99079899|ref|YP_612053.1| amidase [Ruegeria sp. TM1040]
MQDWLTMSAAQLGRGIASGEIDPVALTEAYLTAIDSHPETARIYTKVTHERARAEAKAAQERAKAGLRRS
PLDGVPISWKDLFDSAGVETESGSDLLKGRIPDTDALVLDTATALGSVCLGKTHMSELAFSGLGLNPIKA
TPPCVNDPEAVPGGSSSGAAASVAFGLAAGAIGSDTGGSVRIPSAWNDLVGLKTTSGRVSLEGVVPLCLK
FDTIGPLARSVEDAALMLALIEGSATAPDLEGATVEGKRFADLRTVAQDDLAPEVATAHAAALDKLREEG
AEIVPLEVPELPDAMALSAILFTTEAYGLWKDVIEASPDLMFPEILARFRSGAEFSGSDYVAAWAKLEQV
RMAWDQAVAGFDAVLAPAAPILPPNLARLQSDHDYYVTSNLMALRNTRIGNLMGVCALSLPTGTPSCGLQ
VIGQPDCEEALLRIGAGVEAALA
>gi|99079900|ref|YP_612054.1| aminotransferase [Ruegeria sp. TM1040]
MKFPERFAHLPPYAFPRLRALLDHHAPGGDVVQLTIGEPKHEFPAWVTDVIVENASAFNNYPQNEGSDAL
RGAMADWAAQRYGVTLDPATRVMALNGTREGLYNAAMALCPEEKNGQRPVVLIPNPFYQVYMIAAISVAA
EPVFVPATDETGHLPDYASLPEEVLNRTAIAYICSPANPQGAVASREYWQQLFALAEKYDFKVFADECYS
EIYRDTAPVGALTVADEMGLDPERVVLFNSLSKRSNLPGLRCGLLAGGPETLVQVKKLRAYSGAPIPGPL
QAAAAKVWADEVHVAENRALYQEKYRIADEVFAGLNGYMSPEAGFFLWLPVEDGEAATLKLWQETGVRVL
PGAFLAQGKGAENPGHGYIRVALVASEEQTRASLQLLRDCLY
>gi|99079901|ref|YP_612055.1| DNA translocase FtsK [Ruegeria sp. TM1040]
MAFQTRSRNPLLDSNMQAAIEKRGKELIGLVLIGVGLLVAAIIGSYTPDDSNWMVSTDAPVQNWLGQTGA
TIAFLLITFLGKGAWAISVFLFAWGTRFLLHKGEGRILWPALMLVFWLIVVALHFETLVPDEEWRAFHNA
GLGGMIGNTALGALLALLPFGLAFLVKSLSFLTAVAMIALGAFVLGFSRDELKRIGRFLLLGVLLAYDMI
ARLLGRGASGGLQAARTWQQRRAERRSDAAYDDDALVYSDPVEPAAFTRAEPQFGLHAPAPTPEPHPEPA
TSTEDRGGLFSRATNLIRRAEPVEMPEPELVEPQPVADVEHAPGDERIAQKIANAVRIRRAQALPPEQDP
NLPLTKGRGKRPEPLIFNAPAQEATTEPPLSAPVQQIPAAPTITSVIPQAPQVEDTVSGPNEAFFVDEVP
TEDLPQDPVTSKTAAPEPAPAPAVGSAPRVQITPRVDPTPAAPVSEPRAAMAIPVAEPRKAVVEQPQRKP
LQPSTRAKAEAQPNLFKEENSDFELPPLSLLTNPTAIERHHLSDEALEENARMLETVLDDYGVKGEIVSV
RPGPVVTMYELEPAPGLKASRVIGLADDIARSMSALSARVSTVPGRTVIGIELPNENREKVVLREILASR
DFGDGNQHLPLALGKDIGGDSMVANLAKMPHLLIAGTTGSGKSVAINTMILSLLYKLTPEECRLIMIDPK
MLELSVYDGIPHLLSPVVTDPKKAVVALKWVVGEMEDRYRKMSKMGVRNIAGYNGRVSEALAKGEMFSRT
VQTGFDDDTGEPVFETEEFEPKKLPYIVVIVDEMADLMMVAGKEIEACIQRLAQMARASGIHLIMATQRP
SVDVITGTIKANFPTRISFQVTSKVDSRTILGEMGAEQLLGMGDMLYMAGGAKITRCHGPFVSDEEVEEV
VNHLKQFGPPDYVGGVVEGPDDEKADNIDAVLGLNTGGNTNGEDALYDQAVGIVIKDRKCSTSYIQRKLG
IGYNKAARLVEQMEEEGLVSAANHVGKREILVPEQ
>gi|99079902|ref|YP_612056.1| outer membrane lipoprotein carrier protein LolA [Ruegeria sp. TM1040]
MKQFVFALALGATSLASAAASAAEQLSLNEISAYLNSFATAKADFTQVNDDGSLSTGTLYLRRPGKVRFE
YADNAGLVLAEAGTVAIMDPKSNQPPETYPLSRTPLSIILARNVNLAQANMVVGHGFDGVSTVVRAQDPK
APEHGSIEMMFTDNPVQLRKWVIHGGSGEETTVILGEMQTGLSFPSSLFSISRPKRDR
>gi|99079903|ref|YP_612057.1| hypothetical protein TM1040_0062 [Ruegeria sp. TM1040]
MSRIISALALLLALAACGGGYNSPPRDLDDACSIVTERPNYLRAFKNTERRWGIPVHVQMATIHQESRFV
GNARTPHRFALGIIPMGRISSAYGYGQALDGTWEDYKDDTGRRRARRDRIEDATDFMGWYMTRSLQRNGI
PLSDARNQYLAYHEGHTGYARGTYRSKGWLLNVANKVEARSNAYQVQLSNCRKFR
>gi|99079904|ref|YP_612058.1| hemimethylated DNA-binding region [Ruegeria sp. TM1040]
MLKTRAKYNLGQVVRHRKHPFRGVVFDVDPEFANTEEWYEAIPEDSRPAKEQPYYHLLAENEQTYYVAYV
SEQNLVADYSGEPVTHPDLHEMFTGFDDGNYQLQYQLN
>gi|99079905|ref|YP_612059.1| gamma-glutamyltransferase 2 [Ruegeria sp. TM1040]
MRDFQTPGRSAVFAQNGLCATSHPLAAQVAVDVLKRGGNAMDAAIAGAVLLGICEPQMTGIGGDCFVLYN
RAGETTVRALNGSGRAPKAAQAADLRARGLEAVPLNSADAVTVPGAIDAFCHLSETEGKLGLDALLAPSI
HYAEEGVPVAPRVAFDWGNDAETLQGSARDTYLINGRVPRVGEIFRAPGQAEVLRRIARDGRDAFYSGEI
AEDMISALTTRGGVHTAEDFAATQATATDPIQGHYKGVDLLEHPPNGQGATAILMLNILKHFDIAGMDPF
GAARAHIEAEAAKLAYDTRNRFLADPDHMSRLDYMLAPETAEKLAALIDPKRAMASPADISEAVHKDTIY
ITVVDKDRMAVSLIYSIFHGFGSGIASDKFGILLQNRGAGFCLEDGHANELAGGKRPMHTIIPAMLAENG
RITMPFGVMGGAYQPNGHARFVSNLRDFGMEPQAAMDAPRAFTDRGVFNVERGYSDAVRAELTEMGHKVD
IPTTAIGGSQAIHIHDTGVLEGASDPRKDGCALGY
>gi|99079906|ref|YP_612060.1| putative anti-sigma regulatory factor, serine/threonine protein kinase [Ruegeria sp. TM1040]
MVETFACSFRATEIEARRGIVLVVQRLKDMGIADTRVDEVQIALAEAVNNVVEHAYAETATGDVLIRCNL
HSDRLWVEIRDAGTPFPDAKLPEGKPALVDPSTPLEDLPEGGFGWFLIRELASDIQYQRNPDNNQLSLCF
EIQLTQ
>gi|99079907|ref|YP_612061.1| anti-sigma-factor antagonist [Ruegeria sp. TM1040]
MSLTSTEAGGAQVVTVNAQRIDAAMAIQFKEDMRTETEAGPSRVILDLSHVEFIDSSGLGAIVAAMKQLG
KDRKLDLAGLTPMVDKVFRLTRMDTVFSLFDTLQEALDTEHAEN
>gi|99079908|ref|YP_612062.1| Acetyl-CoA C-acetyltransferase [Ruegeria sp. TM1040]
MTKIVIAGAARTPMGGFQGMYDGVSAADLGGAAIKAALERAGATTVDEVLMGCVLPAGQGQAPARQAGFA
AGLGEEVPATTLNKMCGSGMKAAMVAYDQIALGHSDVMVAGGMESMTNAPYLLPKMRGGARIGHGQVIDH
MFLDGLEDAYDKGRLMGTFAEDCAEHYQFSREEQDAFALGSLSNALAAQESGAFEGEITEVTVKTRKGAV
VTDADEQPKSARPDKIPTLKPAFREGGTVTAANSSSISDGAAALVLASETAAAARGLSVRGHILGHASHA
QAPGWFTTAPVPAARKLMAQIGWDVEDVDLWEVNEAFAVVPMAFMREMGIPREKVNVNGGACALGHPIGA
SGARIMVTLLNALEKRGLKRGIAAICIGGGEGTAIAIERA
>gi|99079909|ref|YP_612063.1| putative GAF sensor protein [Ruegeria sp. TM1040]
MRVNYEDLSKVVAALTEGETDEVALMATVVCELHHADDRFDWTGFYRVTEPEVLKIGPYQGGHGCLVIPF
ARGVCGAAARLNETQLVDDVDAFPGHIACSSSTRSEIVLPVRNRAGEVIGVLDIDSNQPAAFDRDDQDAL
ETLLHAVFGRLPLQS
>gi|99079910|ref|YP_612064.1| lysine exporter protein LysE/YggA [Ruegeria sp. TM1040]
MSFDAWIIFTLFWIAFVTTPGPNAVNCISNGMNLGFAKAMLGVLAILTQACAFLILSALGVTALIAASPT
AFFIAKLVGAGFLIALGIRGWRNATKPAPAAARPARHVYVHALAVATINPKSVAGYLAAFSQFVQPDVPI
WSQMLVIMPTALTLTALSYAGFTLLGALMGRAALAAVFNVWIRRLLGVCFIIYGVLLGLSSAPTPTAAP
>gi|99079911|ref|YP_612065.1| glutathione-dependent formaldehyde-activating, GFA [Ruegeria sp. TM1040]
MIKGHCLCGQIQFETTARPEASSMCHCSQCRRQSGGIWSSAHVTQDALHITGDVSWYNASPEAKRGFCAT
CGSFLFWKRSDEDTISFSLGAIDNPTGLKLEKHIFVAEKGDYYDIADGVTQQS
>gi|99079912|ref|YP_612066.1| rarD protein [Ruegeria sp. TM1040]
MSTKPENVDTPQGLSFALTAYIMWGFLPLYMKMLAHIPPTEVVAHRVIWSVPIAGVLLLALGRMGDLKAA
LRSPRVLGMGCVTAAFVSINWGIYVWSVGAGYALEAALGYYINPLFSIALGALLLGERLTRAQMVAVGLA
TLAVVILTVEAGRLPLAALGLTFSWGFYAFFKKSLPIGPNQGFLLEVLILTIPAIGYIAYLTTTGQSHFA
SVRFDTLLLLGCGVVTAVPLIIYANGAKLLKLSTIAILQYIAPTMIFLVAVFVFKEPFGGARMVAFPLIW
AALVIYSTSLLREMRRKGRQALTDAAPPREA
>gi|99079913|ref|YP_612067.1| ribosomal large subunit pseudouridine synthase A [Ruegeria sp. TM1040]
MTVSSEYCPPSDPLDILHHDAQLLVVNKPAGLLSVPGKGAHLADCLIARIQAAFPEALLVHRLDRDTSGV
MVFAMTPHAQRHLGLQFEKRMTKKAYVARLTGRLEPRSGTVDLPLIVDWPNRPLQKVCHETGKPAHTDWK
VISYGENETRVRLSPKTGRSHQLRVHMQSLGHPILGDPLYASGAALEHPRMMLHSEELRLKHPEGGASQK
FRVKAPF
>gi|99079914|ref|YP_612068.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MDFRAALGLRVASDAPPDDIRRAIARSDTAVVRSLCLVPDPGVICGKFLRLQRYCALEIRMAVQDVGDRS
LRLAIDPAASQDRVEEQLIILHALMERAGLQVRTSRQGVIHWQDAPPLPEVDTGTSQRLTDHLHHLIASD
PARAWRIEETAAWLGLSTRSLQRYLLAEGGRFSATLRHMRTSLASDMLRNSDQSLGEIGFCCGYADQAHF
QREFRKVSGQTPRRFRSQPRESVKTAL
>gi|99079915|ref|YP_612069.1| aldehyde dehydrogenase [Ruegeria sp. TM1040]
MLEKREFYINGQWVEPSAANDCAVIDPSTEEPCTVISLGSQADTDAAVAAAKAALPGWMATPPAERIALV
EKLVEIYNSRAEDLAQAMSSEMGAPIDMSRSSQVGAGSWHLNGFIEAAKNFQFERPLGDHAPNDRIIYEA
VGVAALITPWNWPMNQITLKFGAAAIAGCTMVLKPSEQSPLNAMIFAELVHEAGFPPGVFNLVNGDGAGV
GTQLSSHPDVDMVSFTGSTRAGTAISKAAADTLKKVHLELGGKGANLVFEDADEKAVKRGVLHMMQNTGQ
SCNAPSRMLVQKSIYDRVVEEAAAVANKVEVGPASQEGRHIGPVVNELQWTKIQDLIQKGIDEGARLVAG
GTGRPDGLNKGYYVKPTVFADVNNQMTIAREEIFGPVMAIIPFETEEEAVEIANDTPYGLTNYVQTQDGA
RANRLARVLRSGMVEMNGKSRSAGSPFGGMKQSGNGREGGVWGLEDFMEVKAVGGWTPDA
>gi|99079916|ref|YP_612070.1| 1-Cys peroxiredoxin [Ruegeria sp. TM1040]
MGLRINDVVPNFTAETDQGTITFHDWIGDSWAILFSHPKDFTPVCTTEFSAVAQLSEEWAKRNTKVIGVS
VDGVEDHKKWKGDIESYGNAPAGFPIIADEGLAVSKAFDMLPAEAYLPDGRTPADSATVRSVFIIGPDKQ
LKLSMTYPMTVGRNFAEILRALDGLQMSGKGVATPANWVPGEDVIIPPTVSNEDAKAKFGEFETIFPYLR
KTKAPE
>gi|99079917|ref|YP_612071.1| lipopolysaccharide biosynthesis protein-like [Ruegeria sp. TM1040]
MSLPLWKIKRELKRQGRQLKNIGPRLASLLFSRTYYDLFLSGKKTVTEGQIPKRPKVAVYLIFPSSGILG
SHIEALRYLAQNGYAPVVVSNLPLDEGDLEHLRAHAHLVIQRPNYGYDFGGYRDGVLEVAARHTSVERFV
LLNDSAWFPLPGSRNWLADAEALELDFAGAATNYGHTRVDPKNFRDIRWHYSSNHRNFHYCSFALMMSGK
LFNDKRFQRFWKSFPLTNDKTVTVRRGEIGLTKWVIQQGFSHGSTLDIAALDQRLAEYGIDELRAIAAQT
LMPQSPSMKEVLEDTVRSAESKEDLVNVILTAIARKGISYAQPRLIHRDYGFAFLKKSPLWLDEDASNLT
LAFTRDLDGEFGKVLQAEALDLRRTRAAEFAPAPD
>gi|99079918|ref|YP_612072.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MTRVTLVTVAYNSAAVLPTLLASIPAGVDCIVVDNGSKDPGEIRDLAQAHGAEFIASERNIGFGRGCNLG
AARATMEFLFFVNPDAQLAPGAIEALLAAADAHPDACAFNPRLREGNGKVAFKRRSKLLPKAQWLPREAA
DADCELPVLQGSAIFVRRAAFEAVKGFDPKIFLYHEDDDLSLRLKADCGPLRLVTGAEVVHLFGESTARS
PRTAALKAWYMGQSRVYACRKHGMPNAFGNALIEALSKLLSPLTLLSARKRAKHLAFLRGVLAARQCADA
LKPFDAR
>gi|99079919|ref|YP_612073.1| polynucleotide phosphorylase/polyadenylase [Ruegeria sp. TM1040]
MFNVTTKTMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLTVHYQEKYYAA
GKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDIVAMIAASAALTI
SGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPEQRLDLVVAGTKDAVMMVESEAYELTEEEMLGA
VTFAHEQIQPVIDLIVSLAEETAKEPFDFTPPDYSDLYAAVKAAGEEKMRAAYAISDKQERVAAVGAAKE
EIIASLTEEQQEDGNLGSALKKLESVVLRGDVVKNGRRIDGRALDQVRAIECQTGLLPRTHGSALFTRGE
TQGLVVTTLGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
PTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEEDGSYGILTDILGDED
HLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKNALAQAKAGRLHILGEMAKSLTEASEFSQHAPRIET
MQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKIASANGEAIQKAYDMIHAIVAEPEEGAVYTG
KVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETG
EEIVAEKKEAE
>gi|99079920|ref|YP_612074.1| hypothetical protein TM1040_0079 [Ruegeria sp. TM1040]
MAAYDRLPAPLRAWLREAALPWSAQSCRRIWQAATREGLSPEAALARLDAAERKTLERGVRS
>gi|99079921|ref|YP_612075.1| cobalamin synthesis protein, P47K [Ruegeria sp. TM1040]
MSDPRLPVTVLSGFLGAGKTTLLNRILNNREGRRVAVIVNDMSEVNIDADLVREGGADLSQTEETLVEMS
NGCICCTLRDDLLAEVRRLAAENRFDYLLIESTGISEPLPVAATFDFRDAEGESLSDVARLDTMVTVVDA
VNLLNDFASHDLLADRGETLGEEDERTLVHLLTDQIEFADVVVLNKVSLASAEQVDAARKIIRSLNADAE
IIETDFSEVSADKILDTKLFDFEKAHEHPMWAKELYGFADHVPETEEYGIASFVYRARAPFDPSKLHVVL
NGNLPGVIRAKGHFWVATRPEWVAEFSLAGALSSVAPLGTWWASVPAERWPTHQQARDYIQTHWQEPFGD
RRQELVFIGAGIDWPALKATLDACLIPEATAETLQDYADLDDPFPLWRRADQAA
>gi|99079922|ref|YP_612076.1| 30S ribosomal protein S15 [Ruegeria sp. TM1040]
MSITAEEKTRLMKEFATKEGDTGSPEVQVAILTSRINTLTEHFKTHKKDNHGRRGLLKMVAQRRKLLDYL
KGKEEARYQDLIKKLGIRR
>gi|99079923|ref|YP_612077.1| type I secretion target repeat-containing protein [Ruegeria sp. TM1040]
MLWLASILGMVAVGSAIMIDFESDDADSDETNPDAEADGTGSTIVSPDEFLTGVDPAGNDASDTTETDES
PQVADGDDTDERNIILGTEDLDQLSGGATDDEISGLGGDDQINGYDGNDYLSGGAGADDLYGAAGEDTLH
GDAGDDHLDGGEGQDSLSGGDGADSLLGGLEADSLQGDAGDDTLHGGSGADVVAGGAGSDAVHGNDDDDR
VFGGAGEDTLFGGRGNDVVTGADDDAERDFINGGDGDDTLIAGASDYVTGGDGADQILLGDWIAQGTVEL
VDFNSAEDQLLLIYDSAQGLPELELEPDPDTPGQTLVRLDGEIAMRLTGAETLTADEILLVEAEAGDVAH
LPLPE
>gi|99079924|ref|YP_612078.1| hypothetical protein TM1040_0083 [Ruegeria sp. TM1040]
MITRHHVKGDAPSTALYSDCETYRYSLTRIWEPQGQKVMFVMLNPSKATEVQNDPTIERCERRARALGFG
GFQATNIFAYRATDPRDMRAAADPEGADNMSVLQAGLDWADMVICAWGTHGAHRNQGPRVAAALRASGRP
LHHLGLSKAGHPKHPLYIPYAQQPLLWRQDIEP
>gi|99079925|ref|YP_612079.1| tRNA pseudouridine synthase B [Ruegeria sp. TM1040]
MGRKRKGRDISGWLVVDKPAGLTSTAVVNKVRWAFDAKKAGHAGTLDPEATGVLAVALGEATKTVPFITD
AMKAYTFTVTLGAATNTDDAEGEVIATSAERPTDDDIKEALLGFIGEIQQVPPKFSAVKIDGQRAYKLAR
DGEEVELSARPLWVEELVMLDRPDADHVVLEMTCGKGGYVRSIARDLGEKLGCLGHVRELRRIWSGPFDA
EDGVTLEQIDALAKSPEIDQFLRPLEEGLADLPELKCTPQGATRLRNGNPGMVIASDVEYGEEAWASLEG
KAVAVGTFKAGELHPSRVFNQD
>gi|99079926|ref|YP_612080.1| hypothetical protein TM1040_0085 [Ruegeria sp. TM1040]
MWRALLWGLPLGIVLWSGQASAVECQDLAYEGNRYALCEVDASREELRLFLRDDTGAVMGHFSTIEDRLE
AEGKTLAFATNAGMYHSDRSPVGLYVEDGSQEMRLVTNPGPGNFGLVPNGVFCLREGRADVIETLAFEAS
GTTCKSATQSGPMLVIDGELHPRFLKDSDSRYIRNGVGTSADGRRVVFAISRNTVNFHDFAGLFRDHLQL
PQALYFDGNISRLHAPDLQRSDAGFMMGPVVGVIEDRDTNEGDTLQN
>gi|99079927|ref|YP_612081.1| ribosome-binding factor A [Ruegeria sp. TM1040]
MAKNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDIHDPELNRLSITVGEVRTSPDLKIATAYVLPLGGK
GQEDVLQLLARNKSELRRAIGKKTGLKFTPDLRFQIDETFDRMDDTRRLFNQDAVRRDLED
>gi|99079928|ref|YP_612082.1| dihydrodipicolinate reductase [Ruegeria sp. TM1040]
MTDKPGIVITGASGRMGQMLIKTVLDSDKAELAGVVEREGHDWVGQDIGIAMGGAALGVVVTDDAGSAFA
GAQAVIDFTAPQATIAFSKLAAEAGCVHVIGTTGMSEAEIAQLDPAAQDTVLVRAGNMSLGVNLLVQLTK
KVAAALDEDFDIEVIEAHHHHKVDAPSGTALMLGEAAAEGRGVALAEVSDRGRDGITGARKKGDIGFSAI
RGGDIVGEHDVLFAAAGERIVLRHMATDRAIFARGALKAALWGQGKDAGAYDMIDVLGL
>gi|99079929|ref|YP_612083.1| hypothetical protein TM1040_0088 [Ruegeria sp. TM1040]
MSDTPESNRAKDLPAAAQRALAEAEERRKARDAEKPLPTELGGRDGPDPARYGDWEKKGIAIDF
>gi|99079930|ref|YP_612084.1| Fmu (Sun) [Ruegeria sp. TM1040]
MTDHPSSASDARRAAVALLDKVLGEGLLLSECQTQILERLEPADRARAQRLALQVLRALERADRVLAKHL
RKPPALHVRNALRLGTVELCSGGAAHGVVNDIVNLVARHRRHGQLKGLVNAVLRKVATEGPGEWAKLRVP
RLPKWLRAPLVQAWGSDAMLAIEAAHFKGAPLDLSAKPGADLAALEGAMTPTGSLRLQDAGQVSALPGYE
QGAWWVQDAAAALPAQLLNAARGERVLDLCAAPGGKTLQMAAAGAQVTAVDISENRLARLQENLTRTGLS
ATVVAGDVFEQKGQYDAVLLDAPCSATGTIRRHPDLPHAKDGAGFGGLIELQAQMLAHAWGLVRPGGRLV
YCTCSLLPDEGECQVEDMLEMFPGARIGDRLKSLSGIDPSWITEEGGLRLRPDYWAEIGGMDGFYMAELV
KAEV
>gi|99079931|ref|YP_612085.1| heparinase II/III-like [Ruegeria sp. TM1040]
MSKYDRMASRGTRLLNRYTAWKARKQPAATGFVSQPEPRTIGSFARGRQLVAGNLLFAGYLVESDTTGLW
DVEAPDFAFEAERQGCTWLDDLAAVGDLKARSKAQHWVRGWIDEFGKGTGPGWSPDLTGRRVIRWINHAL
FLLSGQDKPASDAFYRSLSQQTWFLSQRWKGASPGLPRFEALTGLIYAGLALKGCEELADPAVKALAQDC
AQQINAEGGLPTRNPEELLDVFTLLTWAAAALHEAGRSVPREHHAALDRIAPTLRALRHSDGALARFHGG
GRGQEGWLDHALAASHVPARPFEGLAMGFARLSARRTSLIIDATVPPVGKASYNAHASTLAFELTSGRRP
LIVNCGAGENFGLEWRRAGRATPSHSALCIEGHSSARLAAPQKGTGHEFLIDAPTDVPIEREDLVDGYRF
QGAHDGYAKSYGVTIARSLELSVDGRMVSGEDMVLALDDAAKKCFDRALDAGGLRGIGYDLRFHLHPDVD
AALDLGGAAVSMALKSGEIWVFRHDGQCDLKLETSVYLEKARLKPRQSLQIVLSGRAIQYATQIRWTLSK
AQETAVAVRDLARDDPMAYEE
>gi|99079932|ref|YP_612086.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Ruegeria sp. TM1040]
MTDLHPVRRALLSVSDKTGLIELGKSLAERGVELLSTGGTAKALRDAGLTVKDVSEVTGFPEMMDGRVKT
LHPMVHGGLLALRDNDAHVAAMTDHGIGEIDLLVVNLYPFEAALKRGAAYDEMIENIDIGGPAMIRAAAK
NHAFVNVVVDVEDYGVLLEELDQNDGQTSFAFRQWLAQNAYARTAAYDAAVSNWMAGAIGLDAPRRRAFA
GQIAQTLRYGENPHQDAAFYTDGTERVGVATAEQLQGKELSYNNINDTDAAFELVSEFAPEDGPAVAIIK
HANPCGVARGATLLEAYNKAFDCDRTSAFGGIVALNMPLDAETAEAITQIFTEVVIAPGASDEAKAIFAA
KKNLRLLITEGLPNPQDAGLTTRQVSGGMLVQDKDVGHRAMDDLKVVTEKAPTEEQMADLLFAWKVAKHV
KSNAIVYVKDGQTVGVGAGQMSRVDSATIAGVKAQRMADAMELPESLAKGSAVASDAFFPFADGLMEAAS
NGATCVIQPGGSMRDDEVIKAANDAGLAMVFTGMRHFRH
>gi|99079933|ref|YP_612087.1| signal peptidase II [Ruegeria sp. TM1040]
MRSYALYLAALIALIVDQATKIGVVFGLDLVRVLRIDVAPPLLNFRYGENRGINFGLFNDGGDSSRWILI
GISLIICAAVFLWVRRSHANSRLMLISAGLVIGGALGNVLDRVLYGYVLDFLNMSCCGINNPYVFNVADV
FIFAGAAGLILFEGRAKKPA
>gi|99079934|ref|YP_612088.1| hypothetical protein TM1040_0093 [Ruegeria sp. TM1040]
MRFVTAPIILSSVLLLGACANKPLHDLDARRNSPDEFLVLPSKPLEQPESYAALPEPTPGGSNRTDRNPQ
AEAIVALGGRPSGAGIPASEGTLVAAASRYGVEGDIRETLTAEDTKRRKRAGILANIKLFPVDRYAETYE
DDALDPQRVSAAYRRAGVPTPSSPPNGE
>gi|99079935|ref|YP_612089.1| peptidase M16-like [Ruegeria sp. TM1040]
MTTEAAILSGLRASWRSALCAVVMATGLGAPGLMAQETSVDGAGAAQTSQSGAEMVTTFTLENGMMVVVV
EDHRAPVVQHMVWYRAGSADEPVGQSGVAHFLEHLLFKGTDTLEAGELSATVARNGGRDNAFTSYDYTAY
FQRVAADRLELMMQMEADRMRNLRLTETDIVTEREVILEERNQRTDNDPTALFREQMRAVQYLNHRYGQP
VIGWRHEMETLSMEDALSYYGTYYAPNNAILVVSGDVQPEAVRKLAETYYGVIPANPDLPERLRSEEPPQ
TAARRLTFADPRVSQPYVQRSYLAPERDSGSQEKAAALYLLSQLLGGGSTSYLANALQFEQQVAVYTAAF
YSGVSLDDTTFDFVIVPADGVTLDEAEAALDRSVAQFLEAGVDTAQLDRIKLQLRASEIYARDDVDRIAN
RYGRALTSGLTVEDVQDWPRVLQSITEDEIIAVAREVLRPQASVTGYLIQSPQEVAQ
>gi|99079936|ref|YP_612090.1| peptidase M16-like [Ruegeria sp. TM1040]
MSRFKTARRARAFDMRPVKRALMALCLGFALMFAAQMARAEIDIKEVTSPGGIKAWLVEDHSIPFAALEL
RFRGGTSLDAPGKRGAVHLMGGLLEEGAGELRAQDYARALEALAADFSYDADKDTVSISASFLSENRDDV
MELLRQTIQEPRFDQDALDRVRAQVLVGLRSDQTDPNAIAGKTFAQQAFGDHPYGSDGKGTIESVSALTR
QDMFAAHEAVFARDRLYVSAVGDITPEALGALLDELLGDLPAEGAPMPGPAEVLLTGGTTVVPFATPQSV
ALFGQKGMDRNDPDFFAAYVLNQILGGGSFETRLMQEVRTKRGLTYGVYSYLVPRDLAATYMGSFASANE
KMAEAVGVVRDQWQALVESGVTEAELQDAKTYLTGAYPLRFNGNSQIASILVAMQMDGLSTDYVVTRNQK
VEAVTLEDVNRVAKELLDPEGLRFVVVGEPEGLSSTD
>gi|99079937|ref|YP_612091.1| aldehyde dehydrogenase [Ruegeria sp. TM1040]
MTIKEIFETMDYGPAPENAAEALAWLVDQGSQFGHFINGDFTAPGTVFESKNPATGEVLAELTQATQKDI
DAAVKAARAAQEGWAAMGGSGRATYLYAIARLLQKHSRLFAVLETLDNGKPIRESRDIDVPLVQRHFYHH
AGHAQLMDDEMSDRAALGVCGQIIPWNFPLLMLAWKVAPALAMGNTVVLKPAEYTSLTALLFADICRQAG
LPKGVVNIVTGDGAVGEMIVNAEVDKIAFTGSTSVGRKIREATAGSGKALTLELGGKSPYIVFDDADLDS
AIEGLVDAIWFNQGQVCCAGSRLLVQEGVSERFHQKLRARMKTLRLGDPLDKCIDIGAVVDPVQHAEISR
LVASATNCTVHQSAVNMPAKGCFFPPTLIEGLSPSDPLMQEEIFGPVLVSTTFRTPAEAVELANNTRYGL
AATLWTENVNLALDVAPKLVAGVVWVNGTNMFDAAAPFGGVRESGFGREGGVEGLMAYTKPKAQSEALQP
VVAFEGNAKSATPEGIDRTAKMFVGGKQARPDSGYSKPVYGPKGDLLGHVGLGSRKDVRNAVEAANAAKG
WAKTTGHLRAQILYYLAENLAARAGEFAARIDAMTGKGEGAAEVEASLQRLFSAAAWADKYDGLAHGVPI
RGVALGMKEPVGTIGVLCADEAPLLGLVSAMAPAIAMGNRVVLAASEAFPLAATDLYQVLETSDVPAGVV
NILTGPHKDLGDTMAKHLDIDAVWSFSSSDLSKMIEAASAGNLKRTWVNNGHAFDWSRDQSKRFLQAATE
VKTVWIPYGE
>gi|99079938|ref|YP_612092.1| deoxyribose-phosphate aldolase [Ruegeria sp. TM1040]
MDSQTAEDGTQPPKTSAAKPSAKAKPTAAATQDHEHSDLPRNPGIALDLDWALSLEANTSAIERRCASLP
GRRSVKKDYQAAWLLKAISLIDLTTLSGDDTEARVRRLCAKARQPVRADILSALGIDGITTGAVCVYHDM
IPAAVRALHGTHIPVAAVSTGFPAGLSPFHLRLEEIRESVRAGAKEIDIVISRRHVLSGDWQALYDEMKA
FREACGDAHVKAILATGELGTLRNVARASMICMMAGADFIKTSTGKESVNATLPVSLVMIRAIREYYERT
GFHVGYKPAGGISKAKDALVYLSLMKEELGNRWLQPDLFRFGASSLLGDIERQLEHHVTGAYSAGYRHPM
A
>gi|99079939|ref|YP_612093.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MLNRRHTLLGLGAVAALAATPVVATEGRLDVVATTGMIADAARQIGGADVEVTALMGAGVDPHAYRQTRS
DIAAMTRADLVLWHGLYLEAQMEDFFHGLARKREVVAVAEAMPKDLLRGHDDYADKFDPHVWMSPELWKH
VVREVARALTAARPALADRFAANLERHLGELDRLSDYGRRVVSGVPQENRVLVTAHDAFGYFGRDYGFEV
MGLQGISTQSEAGLNRIGALVDTLVERQIKAVFVETSVADRSMRALIEGAAAKGHAVAIGGELFSDAMGA
DGTYEATYVGMLDHNFTTIAGALGAEVPGAGMDGKLGAGH
>gi|99079940|ref|YP_612094.1| ABC transporter related [Ruegeria sp. TM1040]
MMQLSLASHNGQTAPDTQWDQSPLAIRGLTVSYGEKPAVFSVDMTVEPGQMTAIIGPNGAGKSTLLKAAL
GIVPPVSGRVQVFGRPLDHQRARIAYVPQRASVDWDFPTRVIDVVMMGLYRELGLLGRIRGTHHKIARDC
LERVGMSEFATRQIGQLSGGQQQRVFLARALAQGADLYLLDEPFAGVDAATEKAIIGVLKALRAEGKTVV
VVHHDLATVGDYFDNVFLINTRKVAEGPVAEAFTAENLQTAYGGRLATAQIEQIARPL
>gi|99079941|ref|YP_612095.1| hypothetical protein TM1040_0100 [Ruegeria sp. TM1040]
MLIDALFLQLGYNATLVAIGAALLGAASGITGTFLFLRKRALVSDAVSHATLPGVCVAFLILVALGGDGR
SLAALLVGSAVSAGIGLWCMNWLTRNTRLAEDAAIGAVLSVFFGFGVVLLTVIQTLGVGRQAGLEGFLLG
STAGMLYSDALVIASGGAAVLLVILLTRRPMTMVAFDPEYAAARGLPVDKIDLLMMGLVMAVTVVGLKVV
GLILIVALLIIPPVTARFWTERADYVVILAGGLGAVAAYLGAVVSALAPNLPTGPIIVLMSFALFALSLL
VAPNRGVLAAVLRHRRFQRRVHIRQGLLALAQAQTIYEPLTLRLLSRAGLVRADGVATKAGQARAAKALR
DERRWDILRRDQAQEAAAALYDGLREIETVLTPDQIAEIDRKIGTPREAF
>gi|99079942|ref|YP_612096.1| hypothetical protein TM1040_0101 [Ruegeria sp. TM1040]
MGSEFVTLSLTPLLIGIFAAVACALPGNFLLLRKQALIGDAISHVALPGIVVAFLLTGAISTWPMMLGAA
GAAVVAVVMIEGIRRLGRIEPGAAMGVVFTTLFAAGVLLLEQSDTSSVHLDVEHALYGNLESLIWLDGTG
WGSLLDPEALAYLPVELPRMAATLVVVAGFIALFWRPLNISTFDEGFARTMGLRTDLLGLALVIMAAIAA
VAAFDAVGSIIVIAMFICPPAAARMMTNRLEIQIAWSVVFATLSAILGYVLAGYGPLWIGMNDAVSAAGM
IATVSGVILALAALFGPCRTRAGAPSGV
>gi|99079943|ref|YP_612097.1| DNA mismatch repair protein [Ruegeria sp. TM1040]
MATLDPQISEKPPIEAPAKPARPVIRQLDDGAINRIAAGEVVERPASAVKELVENAIDAGATRITVEIAD
GGKTLIRVIDNGCGMTPEDLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLAITSRAEGHDA
AQIRVSGGHMEPVRPAALRQGSIVELRDLFFATPARLKFMRTDRAEMQAISDTVKRLAMAEPSVGFTLRD
VSGGGEGRVTFRADPMNGDLFDALHGRLAHVIGREFAENALKIDATREGIRLYGYAALPTYSRGAAVTQF
LFVNARPVKDKMLTGALRAAYMDFLSRDRHPAAALFIDCDPTLVDVNVHPAKSEVRFRDPGLARGLIVSA
LRHALAEAGHRASSTVAGATLGAMRPEQPTATGAPRVYQMDRPSLGARHSAYAAQTPAQPQAPSYAAPPP
SDAVGFAEFSGTYSGRLVEETPLEEAQPPAEDQPLGAARGQVHENYIIAQTRDGMVIVDQHAAHERLVYE
RLKRQLAENGVATQGLLIPEIIELSDGDCARLLEVAEDLARLGLGIEAFGGSAVAVRETPAILGEVNAEA
MIRDILDELADQGESQLVQARLEAILSRVACHGSIRSGRRMRGEEMNALLREMEQTPHSGQCNHGRPTYV
ELKLADIERLFGRS
>gi|99079944|ref|YP_612098.1| hypothetical protein TM1040_0103 [Ruegeria sp. TM1040]
MDGMEIAIANMSAAGPVLWAAGAGMLLVLVLLFQSWRTSARTARALEPLSQQMHTLGHVAQQLSAGQDAL
RGNLQTVSDTQAHAQMQILQTMEARLGDVQQRMNDRLAENAMKQARAMSEMQERMAESLHGNAKRTATSL
TQLQERLAVIDKAQDNITKLSGDVLSLQDILSNKQTRGAFGEIQLNDIVSKALPSDSYAFQHTLSNGKRA
DCLIHLPNPPGPIVIDSKFPLEPYEALRGAETQEARAQAARLLKGALRKHIRDIAEKYILEGETADGALM
FLPSEAVYAELHANFSDVVREGFSLKVWIVSPTTCMATLNTMRAILKDARMREQAGAIRQELGLLHKDVE
RLGDRVGNLDRHFAQAQRDISDIKISADKAGRRAQRLDNFDFEDLNPESVSRVVALEHPGE
>gi|99079945|ref|YP_612099.1| adenylate/guanylate cyclase [Ruegeria sp. TM1040]
MRPLRHRRTAPDAALLREAELRAEKVVSILRIFVALGLMVVFFLAVGEPPEEIADFLREQWIFAVLSMLS
YLLLGVFSLWLARSGRFRRWMIWPVVTLDCLFMLVNAWVGLENISMPGALTFLLPPTWLVPVVMAFAVLR
FNPYLQAYCVVLIVAGLGYLSFVSDVTVSPDAINRIKHLVSVPPNIVRLTMILLAGVVLVVAAAALRDLL
HRTLIETEKRLLLTRYLPARLADRIQGETLADVRQEQRQDMAVMFVDIRGFTSWAEGRDPAEVGAFVTEY
RIRVQKAARETGGMVDKFIGDGAMLLFDGEAAPQRALECAQRLSEEVQDWSETRLKAGRSAVSVGIGLHW
GEVFSGVVGDEDRLEYTALGDTVNIAARLEQMTKACAMEIIVSDAVLAAAGEPAREGWIALEPAPLRGRN
QPLALFGQKERPRREAC
>gi|99079946|ref|YP_612100.1| hypothetical protein TM1040_0105 [Ruegeria sp. TM1040]
MTEIASNKAEQVALMAREIERAEPELRAFIADMNEDEQAELVALVWTGRGVFEAEEFEQAVETARREKTT
PTEDYLLATPNLAYDIEAGLEALGIDVTAAAEDVMGR
>gi|99079947|ref|YP_612101.1| saccharopine dehydrogenase (NADP+, L-glutamate forming) [Ruegeria sp. TM1040]
MTIHWCGTGLSAIPGLRRLLEAGHDVAVWNRTPEKAAEAVGDLTTNIHKFSIARLSELLSPADVVVSMLP
GDWHVELAELAISKGAHFVSSSYISPEMRALDQKAKDAGVALVNEVGLDPGIDHLMAHALVAEYAESPAF
DADNEISFLSYCGGIPKIPNPFRYKFSWSPLGVLKALRSPSRSIRDFEVLDVARPWDAISSYDAPLATPE
TFEVYPNRDSLPFMEQYHFDKDWKVKTFVRGTLRLNGWTEAWADVFKEVETLEGPEGDARLKEMSDQFWD
ENAYDEGEPDRVVLCVDLKAEKDGQTKWHKTYVMDAWGDERGSAMARLVSYPVSYAIEAAMNGKIAPGVS
AAPSDPALVDSWMGRIGALAQHLQVVSHRS
>gi|99079948|ref|YP_612102.1| saccharopine dehydrogenase (NAD+, L-lysine-forming) [Ruegeria sp. TM1040]
MTHLWVRAEQRLNEDRVGLTPAGAKALLEAGIRVTVEESSSRAIPLQGYIDAGCEIAPENAWPDAPRDAI
IFGLKELPDDGTPLPHRHIMFGHAFKGQHSGKELLRRFREGGGTLYDLEYLVDPSGRRVAAFGYWAGYAG
AAVTLKAWAAQQRGETCGPVGVYKNKDALLADLGRELDATGADRPKAIVIGALGRVGTGAADLCEAMGVA
VTKWDMNETASGGPFPEILDHDLFLNCIFARPGTPVFVPKEALTAARNLTAIGDVACDPDSDYNPVPVYS
RATTWDAPVVRVANDPVLDVMAIDNLPSMLPAESSEDYADQLLASLLTLSDLDAGVWGRAKAVFDEHVAG
>gi|99079949|ref|YP_612103.1| glutathione S-transferase-like [Ruegeria sp. TM1040]
MQLYYAPNTISVAVAIALEEAGLAYEAVKIDFAEKQQTTRAYHQINPKGRVPALAVEGGILTETGALLEF
IADLAPDADLRPSDPVLQARMREVMFYLASTMHVNHAHKMRGSRWASNPASFKDMARKVPETMAASCEYI
CNHGLRGPFVLGDTPCLADFYLYVVCTWLEGDGVKLAGFPKLRAFIEAMDARDSVKTVRAKDML
>gi|99079950|ref|YP_612104.1| phosphoglycerate mutase [Ruegeria sp. TM1040]
MSEITLVRHGQANTAARDEASYDKLSPLGHQQAQWLGDHLRDCKDHYARVYCGTLTRHEETARAMGFDAG
DIIRDPRLNEMEYFTLAQAMEAQHGLAIPKEREGFVAHLPKVFAAWEADCIDTPPESWRDFETRTKAALA
EISEGEGPALVVTSGGLISMVMRQCLGLDTAATARIALAIMNTSLHRLHNIGGTYAPVLFNGVPHLQAPD
RQYARTHL
>gi|99079951|ref|YP_612105.1| hypothetical protein TM1040_0110 [Ruegeria sp. TM1040]
MATCLLYNHSESRPARFYRIELAMNLFDEVSLLREWGVKGGKGCSTIHIFGNLRDASVAADRHRHRMLKR
GYDRA
>gi|99079952|ref|YP_612106.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MPDANASPLVTILDDEPEIRQLLTETLEDAGYRTQSFSRARDFEAALKRVTPDVCLVDLSLPDTDGLALV
HRLALEQGASVIIISGRAQVQDRVTGLELGADDYITKPFDPAEVVARIRVRLRDTSRGGQPDTGDRAEFS
GWTAHFDRYALEDENGEETAFSHAEGEVLRLFLESPKRLISRAQMMERLGGGAGDSFDRAMDVRISRLRT
KLREDPKNPRLIKTIYGAGYIFLGDVSWR
>gi|99079953|ref|YP_612107.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MKQNTAQRMAMIDAGLNLIAQAMSIYDRNLRLAACNHRFQEMFSLPPELVQEGATFEDTIRFIAVQGDYG
PIDDIDSFVQLRVEQARAFVPHYVERQRANGHVISIEGAPLPEGGWVTVYTDITRTKRVEELLRARSEEL
SDQVMSYTEELSATNRKLAATITTLEETQRQLTQTEARTRLTTEMMPAHIAHVDADGHYTFTNGRLSKVF
PGRPSDILGQHIAEALGSAAYARIAPHLSAAYQGESPVFEFTEDQDSRRLRVAFTPDNEGGVFILSMDVT
EETQTRVALQQARKREIAAQMTSGLAHDFSNLLTIILGMQTRLDRMTLPEGAGELVEATLSAARRGGRLL
DRMAEMTSHRGLRPQATDLHALLDEMKILATPSLPQGIGLSVLDNTSEGPVLLDPGRLQDALLNLILNAR
DACGTSGQITVAAHLVGQTWIEFSVSDTGPGFSVQALENALNPFFTTKGQEGSGLGLSMVYDMVKSAGGD
IRISNTVSGAMVTLRLPYRPAPMAAGGIALLVEDSDTLRATYRQVLMDLGYSVIEATSVDEAVALLADVE
GIALILSDIKLEGDATGVDLCTRLGPDAPPVVLMTSLPHTDPLYRAALTLAPLLPKPFESAHLMALLQQK
ADHA
>gi|99079954|ref|YP_612108.1| AMP-dependent synthetase and ligase [Ruegeria sp. TM1040]
MSQTAAQTSSGAGQLMSVPALLERNATVHANRPAYREKEFGIWQSWTWKETAEEIEALALGLMNLGVAEG
DFIAIIGRNRPSLYWSMVAAQSVGAVPVPVYQDSSAEEMAYVLDHCGAAYVIAGDQEQVDKVLEVQDTLT
NLKHMIYVDPKGLRKYDHHQLHQYSHVQEQGRAARDELSSDLAARKAKLTYDSTCVMLYTSGTTGRPKGV
VLSNRNVIESAKNASTFDKLTENEDILSYLPMAWVGDFIFSLGQSYWCGFCVNCPESEDTMMTDLREIGP
TYFFAPPRVFEGQLTNVMIRMEDAGKLKQKMFHHFLAHAKKVGGLILDGKPVGMMDRLKYRLGDLLVYGP
LKDTLGYGRIRVGYTAGEAIGPEIFDFYRSLGINLKQLYGQTEATVFITVQPDGEVRADTVGVPAPDVEI
KIDDKGEIHYRSPGTFVEYYKNAESTASTKDAEGWVATGDAGFIEESSGHLRIIDRAKDVGKMASGAMFA
PKYVENKLKFYPDILEAVLFGNGRDRCVAFINIDLTAVGNWAERNNIAYASYQELAGHPRVLETIRNHVE
AVNVSVAQDEMLSGCQVHRFVVLHKELDADDGEMTRTRKVRRRIVEEKFADIIAALYDGSEQISTRTEVT
YEDGRKGAISATLTCVDAKVQSPMAQQVAAE
>gi|99079955|ref|YP_612109.1| ABC transporter related [Ruegeria sp. TM1040]
MLDAADSYVTEDGRTIGGVVMEMKNITLRFGGVVAIKDISFDIREGEIRAIIGPNGAGKSSMLNVISGFY
VPQEGEVWFHGAKRPPMKPYEVARQGIARTFQNIALFDGMSVLDNVMTGRLNYMKAGMFQQAFWKGRAEK
EEVENREVVEKIIDFLEIQAIRKTPVARLPYGLKKRVELARALAAEPKLLLLDEPMAGMNVEEKEDMSRF
ILDVNDEFGTTIALIEHDMGVVMDLSDRVVVMDYGKKIGDGTPDEVRNNQDVIDAYLGVSHD
>gi|99079956|ref|YP_612110.1| inner-membrane translocator [Ruegeria sp. TM1040]
MPDQLIFAMEVTLNGLMAGVLYALVALGFVLIYKASGIFNYAQGVMALFAAMTLVGIMQGQVPFSHLINA
VFGGHITHFGWTVPSFVAIMMTVAVMVLLAWLVQVLVMKHLVGQEPIILFMATIGLAYFLEGVADLMWGS
EIKTLDVGLPQGINLWIDETTFGIFGYGFFIDNLDIVATVIAALLVTGLVLFSQYTKQGRAMRAVADDHQ
AALSVGISLNYIWVLVWSVAGFVALVAGIMWGTKSGVQFSLSLIALKALPVLMLGGFTSIPGAIVGGLII
GVGEKLFEFLIGPMVGGATENWFAYVLALIFLVFRPQGLFGEKIIERV
>gi|99079957|ref|YP_612111.1| hypothetical protein TM1040_0116 [Ruegeria sp. TM1040]
MTVMLERLRQLEAARKRGDLTDAQYRDARSKLLSVVEDAEVEPTGPRPRTTATRSQAARPRSRPAAPAPT
RRAAPAAAPHSDSVEPQDMSFFWGLVLVGLCGAAMITFLIGRLIGDITIALTLAVTVVAAVVIAAFQRMQ
G
>gi|99079958|ref|YP_612112.1| hypothetical protein TM1040_0117 [Ruegeria sp. TM1040]
MAKLISILNVIAWSGFWAFGYLALTGEGYTGGQVTVATLLAALGLFAGIFAYLKLVRISERKGYAKPSNR
MTRTQRDDAQSKWGEV
>gi|99079959|ref|YP_612113.1| inner-membrane translocator [Ruegeria sp. TM1040]
MFYREAGDFKLSYVEDSQTFPIKFDRYRYYAVLALAFGVVPFVVNDYWVNAILLPFLIYAIAAIGLNILV
GYCGQVSLGTGGFMAVGAYACYKLMTAFPEVSMFIHVLLAGGITALVCVLFGLPSLRIKGFYLAVATLAA
QFFLVWLFNRVPWFYNYSASGQINAPERDVFGIIITGPNAPAWATYLFCLIFLTFCAIVARNLTRGTQGR
TWMAIRDMDIAAEIIGVNPLKAKMTAFAVSGFFVGISGALFFAVYLGAVEVGEAFGINKSFLVLFMVIIG
GLGSIFGSFAGAAFLVLLPVILKVVGVDWLGWPTDIVAHFQLVIVGALIITFLILEPHGLAQLWRVAKEK
LRLWPFPH
>gi|99079960|ref|YP_612114.1| branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid binding protein, putative [Ruegeria sp. TM1040]
MKLKLTSVALSALIAASPAMADLVFPDLSYRTGPYAAGGIPFSDGYNDYFTLVNERDGGIGGVKARVIEC
ETGYNTEKGVECYESTKGEGALVYQPLSTGITYQLIPKVTADGIPLHTMGYGRTSAANGKVFSNVFNYPA
NYWDGASGVINYLLEENGGDLNGKKIALVYHNSAYGKEPIRTLEELSKKHGFELSLLPVDHPGQEQKSQW
LQIRRDRPDNVVMWGWGVMNQVAIQEASNIRFPMENFIGVWWSGAEHDVMAAGDKADGYKAVTFHNVGRD
FPIFEDIQTHVVDKGLAAGAGDQIGNVLYNRGMYAAMLAVEAAKTAQEIHGTAEIDASMMRDGMEALSIT
AEKMNALGMPNFGPSFDVSCENHGGPGLVGVTQWDAETQTWSLVSGFNPTDQEVIDALVAEDSASYAAEN
NIEERCN
>gi|99079961|ref|YP_612115.1| ABC transporter related [Ruegeria sp. TM1040]
MLDAANSTDVQAETLLEVNNIEVIYNHVILVLKGVSLNVPKGGITALLGGNGAGKTTTLKAISNLLHSER
GEVTKGSVRYRGRDVHEQDPAELVKTGVIQVMEGRHCFEHLTVEENLLTGAYTRGDSNAKIQEDLELVYT
YFPRLKERRKSQAGYTSGGEQQMVAMGRALMSRPETILLDEPSMGLAPQLVEQIFEIVKSINENEGVTFL
LAEQNTNVALRYAHYGYILESGRVVMDGPAAELRENPDVKEFYLGMSDEGRKSFRDVRSYRRRKRWLS
>gi|99079962|ref|YP_612116.1| phenylacetate-CoA ligase, putative [Ruegeria sp. TM1040]
MTYFDKLETRSAEERAADLATLLPEQIARAKAAPGFATQLADVDPKKITSVSALAELPVLRKSDLSAAQS
AKPPFGGFTVKPAHGFAHIFQSPGPIYEPGGVDHDWWRMGRFLHAAGVGERDVVQNCFGYHLTPAGMIFE
NGARAVGAAVLPAGTGQTELQVTAARDVGATTYAGTPDYLKVILDKAEEMGVELGFKKAAVGGGALFPSL
RQEYADRGISCLQCYATADLGNIAYESAAMEGMIVDEQVIVEIVTPGTGTPVAPGEVGEVVVTTLNRDYP
LIRFATGDMSAVMPGQSPCGRTNMRIKGWMGRADQTTKIKGMFVRPEQVAALVDKHDEIVKARVVASRNG
EMDVMTVRIEANGGDEITFARSVVDVLKLKGTVDIVTPGSLPKDGLVIEDQRSYD
>gi|99079963|ref|YP_612117.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MTHASQTQAPAPRRKTSARIKGARRFQVVAWVVAIACLLPMAAVAIAALTGGVETITHLGQTVLPRYART
TVYLVLLVSLGTFSIGVGAAWLVTMTRFPGARFFEIALVLPLAFPAYVLAYGYTFLLDHPGIVQTTLREV
TGWGPRDYWFPEIRSLGGAALMLVLVLYPYVYLLARAAFLQQSASAFLAARALGDSSWRAFWRVSLPMAR
PAVASGVLLTVMETIADYGTVAYFGVQTFATGIYTSWFSMADRAGAAQLALCLLGFALMLAVAERISRGR
ARYHHAGKQQAALPPATLSRGKAAGAIILCALPVVFGFLVPLISLTLMGLNSEQNLLSRRYISFITNSLT
LASTAAVVTLLAAVCLGFYQRLKPGRLSSTAANVSRLGYAVPGGVIAVGLMVPFAAFDNALDAWMQANFG
LRTGLLVTGSIWLLVVAYMVRFMAAALGAYEGGQATVHANMDAAARSLGQSPLGMLRRVHLPILTPSLLT
ALLIVFVDVMKELPATLIMRPFNFDTLAVQAHRLAADERLEGAAVPSLVIMAVGLLPVILVCRQVRRRS
>gi|99079964|ref|YP_612118.1| cobalamin synthesis protein, P47K [Ruegeria sp. TM1040]
MRIPVTIISGYLGAGKTTLINSLLGEDHGLRLSVLINDFGSINIDEALISNKTVDSVALTNGCVCCSLGD
DLALSVNDLVSRAEPPDHILIETSGVAEPVAIANALLNDSRLSYAGIVTVVDGSNFSTLMDDPLLKPQVT
QQICAADLVLVSKLEHESDDGVIAALGALGARTPTLTSDIELSRLLFDITPLPRSKSTVSHPGYVSWHHR
STEVIDRRALGDKLAERPEGLYRMKGFVLTSGGAYQLHIVGRHVEARRCDANETLLVALGPEQRISHDQI
EAWWTGS
>gi|99079965|ref|YP_612119.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKIKVFTTVIAASLATTAVADGVVNLYSSRHYDTDERLYTDFEEATGITINRIEGKADELVARMQAEGAN
SPADVLITVDTSRLERAKNAGVLQSIDSDILEERIPANLQDSDNQWFGFSQRARIVFYDKTDVANPPADY
MDLAKPEYKGMVCHRSSSNVYSQTLLSAIIENHGEEAARDWAEGIVANFARDPQGGDTDQLRGLISGECD
VSIANTYYFARALRKDVKGLSAEIEKIGVAFPAQDAEGAHMNLSGAGVAAHAPNRENAIKFLEYLASDQA
QEYFSGGNDEFPAVPGVSKSESVAQLGEFKADDVDLSKVAKNVPTAQKIFNEVGWE
>gi|99079966|ref|YP_612120.1| 50S ribosomal protein L36 [Ruegeria sp. TM1040]
MKVKNSLRSLKNRHRDCRVVRRKGRVYVINKTQRKFKARQG
>gi|99079967|ref|YP_612121.1| N-formylglutamate amidohydrolase [Ruegeria sp. TM1040]
MSGQAYSIEMPQGWQSPVVIASPHSGSNYPKTFVSQSILDANRLRSSEDAFVDQLFAAAPRLGMPLLTAK
MPRAYVDLNRSSDELDPALIEGARRRGQNPRIASGLGVIPRVVANGREIYRGKIPMDEAVARIDDYWVPY
HAALQRLLDASHTRFGRAILIDCHSMPHEAIESCSPRRERRPQIVLGDRFGAAADAAIVDQVEAAFAEVG
FRVARNSPFAGAYITQTYGRPFRHQHAIQVEIDRSLYMHEADVAPNDGFDDVRARLTLALQRIAQLGEDL
TPMAAE
>gi|99079968|ref|YP_612122.1| DNA polymerase IV [Ruegeria sp. TM1040]
MPALCRECLHCFDPGTSPRGPKRCPVCRSPRVKQHEELLSLSIAHMDCDAFYASVEKRDNPELADKPVII
GGGHRGVVSTACYVARIRGVRSAMPMFQALKLCPDAVVIKPRMEVYAETSRAIRAMMDELTPEVEPLSLD
EAFMDLSGTERLHGAAPAVMLARLVKRMKDELGVTGSIGLSHNKFLAKVASDLDKPRGFSVIGKAETAEF
LRDKPVRLIWGIGPAAQASLEKAGIRAFSDLLRWERRDLHDRFGSMGDRLWHLARGEDRRKVSARAPVKS
ISKETTFFEDTMHSEVLDGHLWRLAEQVSDRAKAKGLAGRVVTLKLKRANHSTLTRRQSLHSPTQYADQI
YRTARRLLDQTIQQGPFRLLGCGISELAPEAQADATGDLLDPDATKRANAERATDEIRKRFGKEAIRKGR
SLR
>gi|99079969|ref|YP_612123.1| NUDIX hydrolase [Ruegeria sp. TM1040]
MSFKGAKLLLFLGPHLLVILRDQKAGIPFPGHWDFPGGGREGDETPQACALRETYEEVGLILPESRIHYS
RRYPRPDGATWFFAAEIGARCVGDIKFGDEGQGWDLMTPEDYIAHPLGIPRFKVRLQDYLQSGRRAAEI
>gi|99079970|ref|YP_612124.1| orotidine 5'-phosphate decarboxylase [Ruegeria sp. TM1040]
MTSPLADDRLIVAMDVPNALEGLKLAEQLGDAVSFYKIGLGMLTGGGLALANELKQELGKKIFLDMKLFD
IGATVENAVRGLAQFDLDFLTVHGDPYVVRAAKEGAAGKDLKILAVTILTSLDRDDLDGAMIKSGEIKDL
VQERAGKAFSAGADGVIASPQEAAMIRSLPEAEGKLIVTPGVRPVGADLGDQKRVTTPAQALASGVDHIV
VGRPIWQAEAPRVAAESILQEMNSPQAKAPN
>gi|99079971|ref|YP_612125.1| ATPase AAA-2 [Ruegeria sp. TM1040]
MDLNKFTERARGFVQASQTIALREGHQRLTPEHILKALLDDDQGMASNLIAHAGGNIARVSEAVEAAIGK
LPKVSGDAGQIYLDGQTAKVLDEAAKVAEKAGDSFVPVERLLTALALVKSKAKDALDAGGVTAQKLNEAI
NDVRKGRTADTATAEDTYEALKKFTLDLTERAREGKIDPIIGRDDEIRRAMQVLSRRTKNNPVLIGEPGV
GKTAIAEGMALRIVNGDVPESLKDKRLLALDMGALIAGAKYRGEFEERLKGILNEVTDAAGEIILFIDEM
HTLVGAGKSDGAMDAANLIKPALARGELHCIGATTLDEYRKYVEKDAALARRFQPVMVTEPTVEDTISIL
RGIKEKYELHHGVRIADAALVSAATLSNRYITDRFLPDKAIDLMDEAASRLRMEVDSKPEELDALDRQIL
QMQIEEEALKLEDDAASKDRLEHLQKELADLQERSREMTAQWQSERDKLASARDLKEQLDRARAELDIAK
REGNLAKAGELSYGVIPGLEKQLSEAEQKEEQGLMVEEAVRPEQIAAVVERWTGIPTSKMLEGEREKLLR
MEDGLHKRVIGQNAAVTAVANAVRRARAGLNDENRPLGSFLFLGPTGVGKTELTKAVAEFLFDNDSAMVR
IDMSEFMEKHAVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTD
GQGRTVDFKQTLIILTSNLGAQALSQLPDGADAADAKRDVMDAVRAHFRPEFLNRLDETVIFDRLGRHDM
DGIVEIQLGRLAKRLAQRKITLELDEGAKTWLADEGYDPVFGARPLKRVIQRALQNPLAEALLAGDIKDG
EIVPVSAGAEGLVIGDRVGSSDRPLPDDAVVH
>gi|99079972|ref|YP_612126.1| ferredoxin-dependent glutamate synthase [Ruegeria sp. TM1040]
MGFAMNAVSILAVMFICLIGVLGLVALIMFLIDRSQTQDAIRRNYPVLGRFRHLFSTLGEFFRQYFFAMD
REELPFNRAQREWIARACAGVTNTVAFGSTRNTSVPGTPIFVNAPFPPLDDQFASAEPMLIGPTARVPYN
APSFFNISGMSYGALSRPAITALSRGAREAGVWLNTGEGGLSPFHLDGGCDIVFQIGTAKYGVRDTAGNL
SDARLKELAEIPQVKMFELKLAQGAKPGKGGILPAEKVNAEIAEIRGITEGEASISPNRHLDIANYDDLL
DIVARIREVTGKPVGIKTVAGSEVALREMFLNFAARPEDVPDCITIDGGEGGTGAAPMPLIDLVGMSVRE
ALPLVCNLRDEYGFKDRIRLISSGKLVNPGDVAWALAAGADFVTSARGFMFSLGCIQALKCNRNTCPTGI
TTHDPRFQKGLVVEDKYKKVARYAREVIHEVETIAHSVGVDEPRKMRRRHVRIVGEGGASVPMNVDQPSY
GSRGSNA
>gi|99079973|ref|YP_612127.1| hypothetical protein TM1040_0132 [Ruegeria sp. TM1040]
MTDVSMNPLTVILGIKILVTLGLTHLFLFAPQKRLNGLMAQYGDSPLTYRLYGLTLLVLLGMYFSGLIAA
LGGEVSHEVLALGILSNGGAAVLMQAWSGHPTLRRASWIFAGIAVALLAALLFPDQALLPLLP
>gi|99079974|ref|YP_612128.1| putative sulfite oxidase subunit YedY [Ruegeria sp. TM1040]
MAKRWTDDLTAADVTPEAVFWNRRKLLAGLAGAGLGSIASGAIADDALEPNTWEEVTTYCNFYEFGTGKT
DPATYAHEMTTSPWEVEIDGLVDNPGTYGFEQILAEMTLEERIYRFRCVEAWSMVIPWQGFELADLLNLA
GVQEGAKYVAFETLLRPSEMPGTRYPVLDWPYREGLRLDEAMHPLTLMATGIFGKPLPNQNGAPLRLVVP
WKYGFKSIKSVVKITLTDQEPPTSWNMANAREYGFYSNVNPEVDHPRWSQATERRIGGGLFSRRQPTLMF
NGYEKEVASLYDGMDLTKYF
>gi|99079975|ref|YP_612129.1| putative sulfite oxidase subunit YedZ [Ruegeria sp. TM1040]
MDLSTLNTALRRVPSWLVYLCGLAPAVWLFWQGLTGALGVEPIKALEHRYGELALQFLIASLAVTPLRRI
VGLNLMSHRRALGLLSFVYVVCHLLVWLLLDVQIPSQILADIAKRPYITVGMLAFVLLVPLALTSNVVSI
RKLGTRWRKLHKLSYPAAILAAVHFVLLAKGFQIEPLLYLGGIGVLLVLRLRLPAPKRA
>gi|99079976|ref|YP_612130.1| hypothetical protein TM1040_0135 [Ruegeria sp. TM1040]
MRRACTRALHAKPEFILMKIKDILKICGKNDSFAKKGLRAFVVMRRTPFTGGAEARLAAAGTLLTDRKDG
YDAQERLGHSSMDVGGGA
>gi|99079977|ref|YP_612131.1| response regulator receiver protein [Ruegeria sp. TM1040]
MALTKIYAIDDDMLDRKMLQRVVERSGKVNSLELYSYAESAIEELERCDRLPELILLDINMPRMNGFEFL
EIVDEKLSQAQPPVKVALLTTSSNPADARKAESFASVGWFLSKPLGRDMLDQLVSEFS
>gi|99079978|ref|YP_612132.1| histidine kinase [Ruegeria sp. TM1040]
MTMSMLESEVTEAWAEQYETAFVTYCNTGSEEALIEAYAFAREGLAASMTLAVFACLHHAAFFKLLEQSG
PGNNLYERALDFYLEGVSVFDMAIHGYQNNVARLKEEVTERRRIEEDLRAATFELSRQRSDLDIQVRQRT
AELRERAEELEQSNRLLLQTNKETSEFSYALSHDLKSPINTIGMLLDAIREELPPDSESECADLVSDASL
TAERMKRLIDDVLQYSQVVGNTLERELVDMSQLCQDALSDMRHAIDEAQADISCSHLPVVRGSAFQLAIM
LRNFLSNALTYRDASRPLRVEISAGPTAETGRVLISIADNGIGMPPDCHARIFNLFTRLHTYSDFEGSGI
GLALCKRVANNHNSDIEVESVEGQGTIFSFSIESEEVDTWH
>gi|99079979|ref|YP_612133.1| hypothetical protein TM1040_0138 [Ruegeria sp. TM1040]
MASHLTDGVIHATTRAASLHWCIAQATKTDGALNGDGYLLKRDEDTLLFALADGVGSGQLAHDASSACLR
ILAASDDMDLPSLFETCHTQLTSTRGAALGLVKFFLGQGFLEWAAVGDIEGCIYPTEPTSSRTISMMQRG
GTLGHYFTGITPQQHAWPPTSMLALCTDGVSRKFRERHPNDQAPREFADSCFNDFGRDNDDRTLATFSWT
QEGT
>gi|99079980|ref|YP_612134.1| putative anti-sigma regulatory factor, serine/threonine protein kinase [Ruegeria sp. TM1040]
MNAILTETDLVQLEIEDDRDVVTARSNGRKMAAEMGFSRPDQALIATAISELARNIVNYAGKGGIELGKL
QKPGYVGIQVVAHDEGPGIADIESAMIDGFSTGNSLGLGLPGTKRIVDEFQLQSAPGDGVTVTAVKWLRI
>gi|99079981|ref|YP_612135.1| anti-sigma-factor antagonist [Ruegeria sp. TM1040]
MALRVPILSQGELLIASIQEELSDSEILDLQARILDEVAAKKARNVIVDVSLLDVLDSFGTRTLSEIAAA
VRLRGAQMVIVGIQPEVAMAMVLLGLSLEGVPTALDLDHGIELLKARP
>gi|99079982|ref|YP_612136.1| anti-sigma-factor antagonist [Ruegeria sp. TM1040]
MSQIISSTISEDTTGMNDAFGWFDVSAEDRTRVSALEPLVRDNIDEIINDFYERAGGFDHSALKIQDKNS
LELIKEEQKRHFLELMDAGLGEDYFQTRKNAGIFNERFGVSPSFYMGAYSYFYDRICDIVKREAKNKDEA
IEIFLSLHRIAACHKSLTIEAFAKAREQTIEDREREISELPVPVLKMREGLLLVPVVGTLDSHRARLLTS
RMLDEISKVGARAVVLDITGVPAVDSAVANHLIQSMGAARLMGAHSVLTGISSDVAQSLVKLGVTGETLN
PAGDLQRGIETAEALLDG
>gi|99079983|ref|YP_612137.1| hypothetical protein TM1040_0142 [Ruegeria sp. TM1040]
MAGKTLNKNNLVALGAEMLADLLLESVKGDAARQRRVRMALAANQGPETVAADVRKRFASIRRARSFISR
KTQKTLAKELANHTQLIEARIAPHAPDLAFDLLWAQLHLANDILDRTDDSQGVIANVMQEAMAAVTRLSS
SLTRDPVALADDIFEAVSTDSYGVFDTTVEALAEALGGSGLARLETLAERAREAPLSDADLLLFGYITDP
QQREDRARNARDRASEMLLLDIADLRGDVDAWLSHYAPEELTQDAIAPEASARLLDAGRAEEALALIEQA
LPNGDLWHDKADLDDAHFACLEALGRQEDLRSALWARFERRLCPRALRQYLKRLPDFDDIEAAEQARQHV
LTFAPIEVALGYCLDAPDLSLASELILARHPEIDGETFTCLAPLAEALRAEFPLPAVLLWRAMIDDTLSE
ARAARYRHAARQLTACETEDAQISDYRGHPPHGAYLRDLQKAHARKSGFWGRLS
>gi|99079984|ref|YP_612138.1| ETC complex I subunit region [Ruegeria sp. TM1040]
MRARIYRPARNAMTSGMAKTRKWVLEYAPADAREVDPLMGWTSSSDTQSQVRLKFDTKEEALEYADDHGI
EVEVHEPKTRKPNLRAGGYGENFATNRRGPWTH
>gi|99079985|ref|YP_612139.1| excinuclease ABC subunit B [Ruegeria sp. TM1040]
MPYAHSDKTLPMMADRAPERREKLEGGKKFVMQTAFSPAGDQPTAIAELSQGVLDGERDQVLLGATGTGK
TFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVPRSDTYIEKESQI
NEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLIVGQDYDQRQIMADLVAQQYKRND
QAFQRGAFRVRGDTLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGERTGSFEKIRVYANSHYVTPKPT
LNQAVISIKNELRQRLDNLVSEGKLLEAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTL
FEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKMTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSAT
PAAWEMEQSGGVFAEQVIRPTGLLDPEVEIRPVGMQVDDLLDEIRDVTARGYRTLATVLTKRMAEDLTEY
LHEQGIKVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSL
IQTIGRAARNSEGKVIMYADRITGSMERAIAETNRRREKQIAYNEEHGITPETVKKNVDDVLAGLYEGDT
DMSRVTATIDKPLHGANFEAHLDGLREQMRKAAENLEFEEAARLRDEVKRLEAVDLAIADDPLARQSAVE
AAAEEATRTRGRSTAGKAGQRGGNVKRRGR
>gi|99079986|ref|YP_612140.1| deoxyguanosinetriphosphate triphosphohydrolase [Ruegeria sp. TM1040]
MEWTQLLNPRRLCRPDYADKPNRPAYLQDYDRILFSEPFRRLAQKTQVHPLYDHDHVHHRMIHSMETSSV
GRSLGIQVGEALVADGRLEDGLQHVMAGTVQAACLVHDIGNPPFGHSGEASIGAWFAQQFAANNGTGIGI
AAGIAPEHRAEFEAFEGNAQGFRIVSRLEMARREGGMRLSYATLGAFAKYPCTASAAADAQDTYVGLKKF
GCFAGEEALFAEVASALGLPQERTPSGERWWRRHPLAFLVEAADDICYRILDLEDAATVGDLGGEVVSEI
LEEITGKPNRSPEPEMTLRERTGMQRAMAIGAAIDSAVEAFLEHYDAIMDGTFNDGLMEVSSKAATFARL
KEISNARIFTAQRKTALEVVGRKVIFTILDEFHALFVALKACDWDAQRLLKEHGYWTQLVRAVDLDLRGV
TDDYTAAHALTDFVSGMTDRYAIRVRDMITGQVPS
>gi|99079987|ref|YP_612141.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MATAEITVRGAGIFGLSIAWACHRRGARVQVIDPAGPGAGSSGGLVGALAPHVPENWNPKKAFQLESLLM
AEGFWAEVEATGGISAGYGRLGRLQPISDDRALELAHARRETAAELWQDNAIWEVRPTTDFAAWCPPSPT
GMVIHDTLSARMHPRRACAALVAALRAGGIEVEGDGRDEGQVVHATGYQGLLDLNALSPRLVGTGVKGQA
ALLAYDAGDVPQLYADGLHIIPHADGTLAIGSTSEREFLHPDEPDAQLDQVISRAIAAMPQLAGAKVLER
WAGVRPRARTRAPMLGEYPGRVGHFIANGGFKIGFGMAPKVAEVMAELLLDGNDTIPEGFRVSDNF
>gi|99079988|ref|YP_612142.1| hypothetical protein TM1040_0147 [Ruegeria sp. TM1040]
MADQQARLSWREGDLPVSDQFDDPYFSLQNGLLETEHVFLAGNDLPARFGPGFHIAELGFGTGLNMLAAW
RAWEESGQDTPLHFTSFEAFPMTPSDMARALEAFPAVSPWADRFLAKWSGGGRCDLGSLQLNVILGDARE
ALPVWSGAANAWFLDGFAPAKNPELWQEDLMQAVADHTAAGGTAATYTAAGFVRRGLETAGFTVERSPGF
GRKRHMTRAVLTPAAED
>gi|99079989|ref|YP_612143.1| hypothetical protein TM1040_0148 [Ruegeria sp. TM1040]
MDQLMAKNDTRMGILLMIGATIIFALQDGISRHLASEYNVFMVITIRYWFFAAFVITLALRQTGSIRAAA
QTSQRWVQIFRAFVLVAEICVMVLAFTVLGLVESHAVFVCYPLLIAALSGPILGEQVGWRRWAAIGVGFI
GVLIILQPGSGVFQIAALIPLLAALMFALYGLLTRYVARRDTTATSFFYTGVYGMLFVTPLGVWWWEPMT
AADWGWMATLCVTGALGHWLLIKCYEMAEASAVQPFAYMQLPWAAMIGLLVFGEDMRTNVIIGAAIVVAA
GLFTFWRESLKRAAR
>gi|99079990|ref|YP_612144.1| lytic transglycosylase, catalytic [Ruegeria sp. TM1040]
MTRRLACSLLICATLFGAPALARGLDTALPLMRDGQWQEALIDAGSEGSIQRDIIEWHRLRAGEGTARDV
LSFIDRRPDWPGMDYLRRQSEETLAKAGHSAILAFYRDMPSAQTAEGALSLGEALIEAGRTGEGQAEIVR
AWRSMAMPQEVHDAYLARHKTLLAAHHEARLSRLLWDGHKVSSRRMLELVSDGARKLAEARIALQEQANG
VDAAIAAVPDALKDDAGLAYDRFAWRDAKRRQDDAIAMMFERSTSAEALGEPAKWLRRRADFARQLMRDN
DNTRAYKLAAYHFATPDAGYGYADNEWIAGYVALRKLDDAELAVYHFTRFLAAVESPISVGRAGYWLGRA
YAQLGEIDKAHAAYRLGAKYQSSYYGLFSAQALGRSFDPRLTRPEAPNWRNAPFLQSSVYAAGIALLEAG
EVSLAERFLTHLVESLPPDQALQLGQMAVDMKLPHLAVMISKRAAQDGLELAGAYYPLHPVTDLDLPMAP
EMVLAIARRESEFDPVVVSHAGARGLMQVMPGTAELVAKGLGILEEHAVARLTSDWQYNAKLGATYLAAL
AKEFDGNVVLMAAGYNAGPHRPIAWMERYGDPRDPKVDVIDWIEHIPFNETRNYVMRVTESLPVYRARLG
EAPLPVPFSRELSGRTLQAFAPKGE
>gi|99079991|ref|YP_612145.1| dihydrodipicolinate synthase [Ruegeria sp. TM1040]
MKTTNWSVPMFKGSMPALVTPFRNGELDLDTLKHLVEWHIAEGSTGLVPVGTTGESPTLTHEEHELVIKV
VVETAAGRVPVIAGAGSNNTVEAIRFVEYAHRVGADAALVVTPYYNKPTQRGMIAHFSALHDCADIPIII
YNIPPRSVVDMSPATMGELAKLPRIIGVKDATGKLERVSQQRASCGADFIQLSGEDATALGFNAHGGVGC
ISVTANVAPKLCAEFQAATLAGDYKKALDYQDRLMPLHEAIFIEPGLVGAKYGMSKLGLCTEEVRSPLTG
LEDSTKAKIDAAMAHAGLL
>gi|99079992|ref|YP_612146.1| ECF subfamily RNA polymerase sigma-24 factor [Ruegeria sp. TM1040]
MNHGTENTGTDAFLSVRPRLFAVAYRMLGSVADAEDILQDAYLRWQSAPRGEVRDPTGYLVRVVTRLCLD
QLKSARVKRETYTGAWLPEPLLTEDPAELIDHDVSVALLLALERLTPLERAAFLLHDVFGNSHDEVASAL
DRSPSACRQLVSRARRHVQSERPRSQVAPEESRALTEAFFRASKTGDMAALTQLLAQDVELVSDGGGKAM
AALNPIYGRDKVMRLAEGLARKYGAHLPPRWRFAMLNGLPAILSQEPEGLVQATALEIRDGRIAKVYVIR
NPEKTAHLAAVL
>gi|99079993|ref|YP_612147.1| alkylhydroperoxidase AhpD core [Ruegeria sp. TM1040]
MTQRLDQFAAAGDLFKPMMQQEELLKTSGLEFSLIELVKLRASQINACAFCIHMHTHDARNAGESEDRMH
LLPAWRESTLYTPRERAALAWTEALTLVADTAAPDADYELVAKAFSPREQVALTLLIGAINAWNRIAIGF
RTPHPAAKEASAA
>gi|99079994|ref|YP_612148.1| hypothetical protein TM1040_0153 [Ruegeria sp. TM1040]
MPETSPSPRLPLSIARLRSRAKVLFPGVAVSFIVAATAQFLAEHYATPAMLMALLLGIAVSFLGEEGRTV
PGVAFSARTLLRLGVALLGVRVSMMVLAGLGLPLIFLTAGGVVATIFFGLWVARFFGQEWRFALLTAGSV
AICGASAAMAIAAILPRDKSSEQRLIFTVMGVTVLSTIAMILYPILAGSLQFDHIQAGVFLGGTIHDVAQ
VVGAGFSISEETGDTATLVKLIRVSMLAPVVLVASLFIRARIETSAEGRQPPLLPGFVIGFIALAALNSL
ALIPPVVADFLSACSRWLLLIAIAAVGMKSNLKQVLSVGGAAIGLLVTETVFIAGLILLGILLLT
>gi|99079995|ref|YP_612149.1| hypothetical protein TM1040_0154 [Ruegeria sp. TM1040]
MLVDLPFALTAMQGLFLAAALFFAAVIRGYSGFGFSAIFIVIASMVTNPLPLIPVVFTCEIAMTAFQARG
IRAHIDWHRAIALLVGAAIAVIPAVALMARLEPTHARMVVSALILLLSLILLSGWQLRRPIGALGHAGVG
ILSGTANAAGVGGLPTAAFLSAQAMPPAAFRATMIIFLTGIDLMALPTMSAHGLVTSETAWAAVMAFPIL
ALGVWCGSRGFANARPDGFRQKVVILLATLATISLIRAMF
>gi|99079996|ref|YP_612150.1| sulfoacetaldehyde acetyltransferase [Ruegeria sp. TM1040]
MRMTTEEAFVKTLQMHGIEHAFGIIGSAMMPISDLFPKAGITFWDCAHEGSAGMMADGYTRVTGNMSMMI
AQNGPGITNFVTAVKTAYWNHTPLLLVTPQAANKTIGQGGFQEVEQMKLFEDMVAYQEEVRDPSRVAEVL
NRVICNAKRASAPAQINIPRDMWTQVIDIALPEILTFERPAGGAQAVSEAASLLSEAQNPVILNGAGVVL
SGGGIAASMALAERLDAPVCVGYQHNDAFPGTHPLFVGPLGYNGSKAAMELIRDADVVLCLGTRLNPFST
LPGYGIDYWPTEADIIQVDINPDRIGLTKPVRVGIVGDAAKVADGILQQLSEDAGDAGRSARKAHIAATK
SRWAQQLAAMDHEDDDPGTTWNARARSAKPDWMSPRMAWRAIQSALPSDAIISSDIGNNCAIGNAYPTFE
AGRKYLAPGLFGPCGYGLPAIMGAKIGCPETPVVGFAGDGAFGISVNELTAIGRAEWPAITQVVFRNYQW
GAEKRNSTLWFDDNFVGTELDTKVSYAGIAQACGLKGVVARTMEELTATLRHAIEDQGRGITTLIEALIN
QELGEPFRRDAMKKPVAIAGISAADMRPQARA
>gi|99079997|ref|YP_612151.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MAISVETFFLNTDAQGTLQAQIQEMIAAGILSGRFRAGEKLPSSRKLAQHLGVSRITVTLAYTELVANDY
LSARGRSGYFVSQTAPVPPSFSPIQKEADSVDWNRAITQDFTGGDSPPKPRDWRNYRYPFIYGQADATLF
DHANWRLCALRALGQKDFAAMTGDYFDQDDPLLIEYIARNTLPRRGVIARPEEILITLGAQNALWTVVQL
LLQPGRKAAIEDPSYYTLRDQLSHTGCDLDVIAVDEDGLPPAQIATNTDVIFTTPSHQSPTTATMPMARR
KALLSRATEIGAVVVEDDYEFEMSFRNQPSPALKSIDRDGRVIYLGSFSKSLFPGLRLGYLVGSEPFIRQ
ARALRANVLRHPPGHVQRTVAYFLSLGHYDAQIRRTAKVLQERRAVLERAVEAEGLCPANRSLYGGSSLW
MQAPDQVNMGQVGLKLREKGVLIEPGAPFFARDTRRHNFYRLGYSSIASERIPQGIAHVAEAIRDSQS
>gi|99079998|ref|YP_612152.1| ArsR family transcriptional regulator [Ruegeria sp. TM1040]
MDEAVAAQGFAAMGSEARLEVLRVLVRAGETGVSVGDIRERTGIAASTLAHHLKFLAAAGVVSQEKVGRS
TICRADLAHLERLAGYILSECCLDEKLGQVARVANDG
>gi|99079999|ref|YP_612153.1| permease [Ruegeria sp. TM1040]
MADTSLSLRPMRAALEGMQSPWTLGALILAVVALVDGANFWPVLSFAAQALLSTSKYILFAVTLLAYLKA
TGAEAMVARAFVGRETRMIFLAALLGGLAPFCSCEVIPFIAGLLALGAPLSAVMAFWLSSPLIDPPTLLI
TAAALGWPFALAKAVSAVALGLFGGFVVKALRRGGLFAEPLKRAPVKSCCGCAAPATDARPNWRFWQDAE
RREIFRGQFVENALFLLKWLAFAYVLEALLVTYVRPEWIAAIVGGEGVVPIAIAAVVGMPAYLNSYVAPP
LLAGLMSQGMSAGAALAFMIAGAVSSIPAMAAVWSLVKPRVFATYLGLGVSGAILSGVVFQMI
>gi|99080000|ref|YP_612154.1| aminotransferase [Ruegeria sp. TM1040]
MHGTFTDNDLSHVIEADKAHVWHHLVQHKPFETSDPRIIVEGKGMRVWDQNGKEWLDAVSGAVWTVNVGY
GRESICKAVYDQMMKMCYFAQAAGSVPGALYAEKLIEKMPGMSRVYYCNSGSEANEKAFKMVRQIAHKKY
GGKKTKILYRDRDYHGSTLAAMSAGGQDERNAQYGPFAPDFVRVPHCMEYRKHELGLEHLSGEEFGIAAA
NLIEEVILREGPETVGALCLEPVTAGGGVIEAPEGYWPRVQEICKTYDVLLHIDEVVCGIGRTGTHWFGY
QHYGIKPDFVTMAKGVASGYAAIACMVTTEEVFELFKDDTSDKLNYFRDISTFGGCTAGPAAALENMRII
EDEGLLENCTKMGERMISNLRVLQEKHAVIGDVRGKGLFLGAELVTDRDTKEPVEEALAQKVVAECGNHG
VIIGVTNRSVPGRNNTLCFSPALIATADDIDKITDAVDKALTTVFG
>gi|99080001|ref|YP_612155.1| hypothetical protein TM1040_0160 [Ruegeria sp. TM1040]
MTEFTLMVAPNGARRGKADHPALPMTAPELAETALACHRLGAQALHLHVRDAEGVHSLDAGRYREAMSLV
SEAVPTMGIQITTESAGLFDVGAQLACLEALRPAAASVSVREMARDKSLAARAYALCSEAGTQVQHILYT
PECVEQLEAWYADGTVPDEMRDVILVLGQYATGQPARPAMLPPFLALIAPLDLRWSLCAFGPEEHACLLA
AVEAGGQVRIGFENSLGPMGGPAWADNAASVEAFLNLTVARGHTLDPHQNMPGANLRELT
>gi|99080002|ref|YP_612156.1| hypothetical protein TM1040_0161 [Ruegeria sp. TM1040]
MSHVFPRHTKSDLPTAVGGDGCYLIDANGKRYFDGSGGAAVSCLGHSDAAVIKAVQEQVEKLAFAHTGFM
TSEPAEALADLLISKAPGTLDRVYFVSGGSEATEAAIKLARQYHLERGEPQRRHLIARRQSYHGNTLGAL
AAGGNAWRRQQFDPLLIGVSHIAPCYEYVDRSDGESSFDYGQRVANELEAEILRLGPDTVMAFMAEPVVG
ATLGAVPAVEGYFKRIREICDTYGVLLILDEVMCGMGRTGHLFACDADGVAPDILCIAKGLGAGYQPIGA
MLCSSAIYDAIAQGTGFFQHGHTYLGHPVATAAGLAVVNQMLERDLVSRVAEKGTQLQAALMERFAQHPN
VGDIRGRGLFRGLELVQDRDSKAPFDPAHGLAARIKRAALEAGLICYPMSGTRDGRMGDHILLAPPFILS
ETQIEEICDKLAIAIEEGLASI
>gi|99080003|ref|YP_612157.1| L-threonine aldolase [Ruegeria sp. TM1040]
MPRHRDDTAPRRQKRTAIMSQYTQTPGARPQQVLCDLRSDTVTRPDAGMRAVMADAEVGDDVYGEDPSIN
RLESALAERAGKEAALFLPTGTQSNLVAMLAHCGRGEEVITGRDYHVYKYEAGGASALGGVVLDALRVSE
DGGLEPAEIAAAIKEDDSHHPISRLLSLENTHNGKVVSLARLDKSIAVARDAGLAVHLDGARVFNAVTAL
GCELTDIAGRFDSVSICLSKGLGAPVGSVLVGPTEIIVRARRLRKMVGGGMRQAGVLAAAGLYALEHNVT
RLAEDHARAAELAETLRGLGAGMVAHNTNMVFFTPEAGNNAALGAALAEAGVVISAGGTGAIRMVLHKDV
TSEGFEATLAALRSHYG
>gi|99080004|ref|YP_612158.1| putative carboxyphosphonoenolpyruvate phosphonomutase protein [Ruegeria sp. TM1040]
MSQIEKATRFAALHQKGDPVVLYNIWDAAGAKALAENGAPAVATGSLSMAAAHGYADGESIPLDFVLRIV
ARICETVSVPVTVDFEGGYATAPSEVGENVRKVLRAGAVGINFEDRVVGGSGLHPVSVQVDRIHAIKTVA
AEEGVPLFINARTDLFLGRDPETHRDQLPEALERAAAYSEAGACGFFVPGLTELDLIAHCVEHTHLPVNV
MMRGQAQSLKEIAALNVARVSYGPGPFFKFLTDLKAAEARLRA
>gi|99080005|ref|YP_612159.1| recombination protein RecR [Ruegeria sp. TM1040]
MAAQDNSDIEALIALMAKLPGLGPRSARRAVLHLIRKRALVLTPLADAMSRVAETARECLNCGNVGTSDI
CALCEDETRANGELCVVEDVADLWAMERAGVFKGRYHVLGGTLSALDAIGPEDLRIPRLVDRVSTEGVSE
VILALNATIDGQTTAHYIADQLSGRVKLTSLAQGVPIGGELDYLDDGTISAALRARKEI
>gi|99080006|ref|YP_612160.1| hypothetical protein TM1040_0165 [Ruegeria sp. TM1040]
MFKGLSGLGDMAGMMKKAQEMQSKMGEMQEELHNIMVVGEAGAGLVKATASAKGDLKSLDIDPSIFNGDD
KEVVEDLILAAVKDAQTKAAERAQDEMTKLTEGLGLPKDMKLPF
>gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
MSEHSPEISDAVQSGQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTAR
IIAKGMNCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSVAYRAASARYK
IYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEPEVMIDLLRRIA
TSEQAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTADQVRAMLGLADRGRVLDLMDMILRGDA
AAALTELSAQYAEGADPMAVLRDLAEITHWVSVVKITPDAAEDPTISPDERARGQDMAARLPMRVLTRMW
QMLLKALEEVAAAPNAMMAAEMAVIRLTHVADLPSPEELLRKLQDTPPPPHPGGPGGGHPMQGMGSPAAG
GGGGAPAYASAPPQGAPGGDPRGGHTMSTSGGQSAVLAQRADSALARYPSFEHVIELIRHHRDVKLLVEV
ETGVRLVSYQPGRIEFTPAANAPQDLAARIGTALQNWTGSRWVVSIAPDGDAPTIAELRDAAQNALRAEA
SAHPLVQAVLQNFPKAKITKIRTQEELAAEVQAEALPEVEDEWDPFEE
>gi|99080008|ref|YP_612162.1| protein tyrosine phosphatase / dual specificity protein phosphatase [Ruegeria sp. TM1040]
MVSATKLQPQQAEPTLSLHALSVGDGILALSRAPGAGGDYAADLRLIHEWRPSMVISMTTRVEHVILGVE
TLGTDIQGLGSRWFHMPVEDYQTPTKDLEDHWHQVSALARQALSGGGRVLVHCRGGCGRSGMAVLRLMIE
SGEPPDAALARLRALRPCAVETDAQMAWAYGRRRQAPPA
>gi|99080009|ref|YP_612163.1| hypothetical protein TM1040_0168 [Ruegeria sp. TM1040]
MSRSSLRPLDPSAEGTRMTDHTETRDAGTHEFVSTTCLHLGRPCPAAQRMLAALAKALDSARGLTKDDFE
ISGESRLDGCEKACPARFAASHARIRVFCDVQATTKTETLDRFADAMLSADGGSAHGTSSADMPRAFGEA
RPARPPVQAPSIRHPQGAQRPRLMS
>gi|99080010|ref|YP_612164.1| 5'-nucleotidase-like [Ruegeria sp. TM1040]
MTQDDQDATGTQEEAGDQPGVTGRLRVLATSDVHSHLLGFDYYADQEHPGIGLSRTAQLIAEARKEAAEA
GDIAVLLDNGDWLQGSPLAEPALATDSALAPAIHAFEVLGYDAVGLGNHEFNYGLSALSRVLSALPCPAV
SSNITPLSADDTLPVHKHLILTRHFRRATGGQDGVAEVKIGLLSVLPPQTMLWDADHLAGRLHVDDMLRS
AKAAISDLRASGADVVIALAHTGEGDDTARDGMENALRPLSRLPGLDAAIGGHTHLLLPPPDGSGRDWEI
PVVMPGSGGSHLGVIDLGLRQTPQGWRVEGGSAALRAVAHQTRDGLRPVVSEAPDLVLALRDVHEQTRAE
MAAKVGTLSEAHHSYFTYFAEDRALALIATAQAAAVQPMLLKSEYADLPLLSAVAPAKFGGRAGPLNYTD
VPPGEISRRHVADIYSYPNELRCIIVNGHQVRDWLEMSAGLFNQLEPDADARLLADPARPGHNFDVIFGL
QYEIDPREHARFDAEGRRLHEGPGRIRNLQWNGRPMHGDQQFAVAFNSYRSSGGGNFRMLMDAPGLPLPP
QMIRDVVGAYVASAHDLSAVFPAPWRFSPDLGVDAIALTGPGARRHLHELPENVARSATELDTGFLALKL
RL
>gi|99080011|ref|YP_612165.1| NUDIX hydrolase [Ruegeria sp. TM1040]
MKRAEQVTFGGSGLDRAALLRADGDALQTLWDAADVQIMLLWRGKPLCVFAPDHAEIEGLAFLNARDPLV
SGRRAEALFLGRSAEGAGYFAVSLEDWQPEGLDTTTLDSFLDPSEQRHPDLPDSYAFLELRRVMTHLSAR
DAELAATAKAMLSWHASHGFCACCGEPSRVEQAGWQRRCPSCNAPHFPRTDPVVIMLITRGDRVLMGRSP
GWPEGMYSLLAGFVEPGETLEAAVRREVLEESGVRVGEVGYLASQPWAFPMSLMFGCSGVALSEDITLDP
QELEDAFWMTRQEAMDAIAGHHPKVRAPRKGAIAGFLLENWVADTLE
>gi|99080012|ref|YP_612166.1| hypothetical protein TM1040_0171 [Ruegeria sp. TM1040]
MHFETKEDTDSPIDEVFAAVTDFESFERSAIRRGVEVRRNGDSDAAPEDLSWDVVFMFRGSERKMRVEVA
ECDRPNTVVFAATGSGMTGLLRVDLMALSPRRTRMTVRLEMKPKTLAARLLVQSLKLARNKLNRRYRKRV
AEFVDLLENRQSQTA
>gi|99080013|ref|YP_612167.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
MYRLLDCITQEHDYAFVAVAALICVIGSLLSVHMSGRLTEWTGKRKIVQLPLAGLVTGATIWSTHFIAMT
AYDPGYEHGYEPVLTATSLFVGVIGSFAANASLAFVPGRGAPVLAGGLFGLTVSAMHYTGMQAYLVPGTL
YWNTGAVAASVLLGVGLGALSYVLMARPMRGIVGRLGPALVMVLAICLMHFTGMSAIEVLFDVAVDVPPK
TISDNAMALLVFAVTAIILLIAMASASIEVNMEDDARDQLNHAATHDPLTGMPNRMWLTRKLDALKIRLD
ENETRRCAIMTIDLNLFKEVNDVYGHSAGDAVLRCVALRMMQHEGEGECVTRVGGDEFVAIKEGFRRMEE
VLSFAERLHAAIVEPVDLEDVSLRVGASIGIATTMDDGRDPADLLHKSDVAMYRAKSDPDTPICRFNAEM
DRRSREKTQIVHDLRLAVDNDEFELVYQLQNALDTMEPVGFEVLLRWNHPKRGRVSPDVFIPIAEETGLI
RDIGHWVLREACREASLWRRPFSVAINVAPQQLVQPSFVEDVMDILMETGLDPARLELEVTEASIIDDQA
HTLKVMHKLKSIGIRIAMDDFGTGYSSLATLQAFPFDKIKIDRSFVQDVHKDAQRAAIVRSTLLLGAALD
IPVLAEGVEVEDELRFLRAESCSSVQGFYFGKPMPRDDMRAIACRDDGEADVGVA
>gi|99080014|ref|YP_612168.1| IS5 family transposase [Ruegeria sp. TM1040]
MARLKPFFPKSHGRPRVDDRRVLSGIIFINRNGLRWCDAPSAYGPHKTLYNRWKRWNDKGIFAQMMAGLA
AEHGEEKTVMIDATYLKAHRTATSLGVKKGGVDA
>gi|99080015|ref|YP_612169.1| IS4 family transposase [Ruegeria sp. TM1040]
MTTKLHAICDSRGRPLNLFVTAGQVSDYNGARALLSSLPDVEWLLGDRGYDADWFREALNDKGIRACIPG
RKQRKKPVKYDKRRYRRRNRIEIMFGRLKDWRRIATRYDRCPKVFLSAIALAALVIYWL
>gi|99080016|ref|YP_612170.1| DNA polymerase III, alpha subunit [Ruegeria sp. TM1040]
MEPNRTHRPVETFSTARLSPPHAGPGYAELCVTSNFTFLTGASHPEELVTRAAELGLAAIAITDRNSLAG
VVRAWSALKELRREAEAGIQIRSHQRVDPSSRQKIDTSAPLEPPAAPTLPKLIVGCRLVLRDSQTDWIAL
PRDRAAYARLTRLLTLGKRRAPKGECHLDARDLMAACRGMSLIALPQSDLKTAIPEIRRMQQCFPHYVFL
GAAPRYDGSDQAYLAACAHAAQITSAPMVAVGDVLMHRASRRPLADVLTCMREHITIDEIGSRALPNSER
RLKAGADMARLFQAHPAALRRTLEIADKCSFDLGELSYDYPHEIVDGETPQARLERLAAEGLRRRYPDGP
TQKAVVLMDKELKLVAELGFAAYFLTVHDIVQYAKSQNILCQGRGSAANSILCYLLGITDVSPDMITMVF
ERFVSRYRGEPPDIDVDFEHERREEVIQWIYQKYGRDRAGLCATVIHFRSRAAIREVGKVMGLSQDVTAG
LSGQIWGMSNGGVDLKRIEELGLDIQDRRLMQTIRLIGEIIGFPRHLSQHVGGFVITKGRLDELAPIENA
AMEDRTVIEWDKDDIDALGILKVDVLSLGMLTCLQKSFALLKAHEGETLSIGTVPQEDAKTYAMLCRADA
VGVFQVESRAQMNFLPRMQPREFYDLVIEVAIVRPGPIQGDMVQPYIRRRNGLEEPEPFGPELEQVTKRT
LGVPLFQEQAMQIAVVGAGFTPEEADHLRRSLASFRRMGTIGTFRDKFINGMLDKGYSQEVAARCFSQIE
GFADYGFPESHAAAFAMLAYVSAWLKCHHPAVFACALLNSQPMGFYAPAQIVRDAREHGVEIRPICVNAS
DWDNQLERRPDGALALRLGFRQIKGFREEDAGWITAARGNGYPDPESLWLRAGLRPDVLTRLAEADAFSD
MGLTRRDALWQVKAIRSAKPLPLFDDPIDGESISEPAVDLPVMHLGEEVVEDYISTRLTLRAHPMELLRP
ALPGLTPHAALLDAPLGRHTVCGLVITRQRPGTASGVIFLTLEDETGVSNVVVWPKIYEQYRRIVMGGRL
LQVRGYLQREGIVVHLIAQEITDMSHRLSDLGHPLDEAVGITQPQADDAPRPRQATTSARHPREQAKRLF
PSRDFH
>gi|99080017|ref|YP_612171.1| hypothetical protein TM1040_0176 [Ruegeria sp. TM1040]
MTYSDARAFCPDLRSQVAHPPEDQRFLQGLRRWATRYCPWVGLEGDDGLVLDVTGSTHLFGGEEAMLTQM
RRRLARAGMTVRIGLGNTRGAAWALAHHGEGIAPAGDMLEALAPLPVAALRLDTNTSVALQRLGIRTIRE
LATTPRAPLTRRFGPTALMRLDQALGNQPEEISPQAEPPHYGVRLTLPEPIGLVGDVMAGIRRLLEQLCP
KLQAQEVGARRLCVTLGRVDRDSQQIELRLARPLHDAHRILPLFERGLKDLDAGFGIERLRLEATVVEPL
PARQLTHVSAARKDKLEDLISRLGTRVGLENIQRFLPADSHIPERSFIISPAAYSDPAPHWTLPRPRPLL
LFAPEPIAGRTPRPPQRFRWRRMALTTGRAIGPERICPEWWMEDEAWRSGLRDYWRVETQEGRRLWLFFT
PQAPSWFVQGEFA
>gi|99080018|ref|YP_612172.1| hypothetical protein TM1040_0177 [Ruegeria sp. TM1040]
MANAPLPFPLVEGRAHEVCGAGAYSFAFALAAARGGQVLWVRETWEAARINPDGFAEFINPADLLLCNAP
SQIDALAATEEALRSGAVALVVVSLTKPLGLTEGRRLQLAAKEGKSIGLALIPEGMGSNAAETRWRCSPH
FDAAETSLNRPSPSPDDSTLQRWELIKNKSGTLGVWYVRWDRASRRLAMVSPAGK
>gi|99080019|ref|YP_612173.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MSKAGQVRGRGRPRKFDEQVVRQTILSVFWEKGYAATSLDDLSKATGLVRPSLYAAFGNKEEMFLRAMDD
FVIRVQSDLNRQVPRDATPEDALRIIYTAMLEIYSGAHAKGCLVFSTAVAEAPAHPEIRARLAQRLVQTD
AQFRRLFDHTAPGASETARQAAAEMAAAVLHSLGLRVRAGAEPDEVRRFIETAARSIAAGLAP
>gi|99080020|ref|YP_612174.1| metal dependent phosphohydrolase [Ruegeria sp. TM1040]
MLLTDLVTPPDTALCAAAEEMARMASDPFLYNHVSRSYIFGALAARATGTQYDPELFYIAAMLHDLGLTE
TYMAEDRFEVDAAEAAAKFLAAQNVEQSRIDRVWDAIALHTTFSIPQKKSPEAALVQIGAGLDVGVMPHD
HITPEVMEQVLDAYPRLGFKKAMEQALIKVYAAKPMTAMHNFGADVAHRHVPDFHPPHFCDVLHGADFPE
>gi|99080021|ref|YP_612175.1| enoyl-[acyl-carrier-protein] reductase [NADH] [Ruegeria sp. TM1040]
MTGVLTGKRGLIMGVANERSIAWGIAKAMHEAGAELAFTYQGEAFGKRLEPLAASVDSDFMVDVDVTDDA
SLDTAFAQLGARWPKIDFLVHAIAYSDKNELTGRFINTSRANFKNSMDISAYSFIEVARRAYPLMQENGG
GTMMTLTYGGSNRVTPNYNVMGVAKAALESATRYLANDLGPDGIRVNAISPGPMKTLAGAAIGGARKTYK
HTEQNAPLRSNATLEAVGGTAVYLASDAGAYTTGEIIRVDGGFHVLGMPQQEHL
>gi|99080022|ref|YP_612176.1| 3-oxoacyl-[acyl-carrier-protein] synthase I [Ruegeria sp. TM1040]
MRRVVVTGLGIVSSIGNNAEEVIASLRAGKSGIVASEEMAEHGFRSQIAGTLKIDPAEHVDKRTLRFMGP
GAAYAHIAMGQAIADAGLSEDQVVNERTGLVAGSGGPSTSSMLTAHQTVLKTGATKRIGPFAVPKCMSST
ISANLATAYKIKGINYSITSACSTSLHCIGNAAEQIMMGKQDVMFAGGGEELDWTLSCLFDAMGAMSSKY
NETPEKASRAFDQDRDGFVISGGGGIVVLEDLEHALARGAKIYAEVTGFAATSDGHDMVAPSGEGGERAM
RLALQTLPEGRKVSYINAHGTSTPVGDVGEVEAARRVFGAGNVPPISSTKSMTGHAQGAAGALEAIFCLL
MLDNDFITPSINVETLAEGIEEGEVATQYVENAGLDSVMTNSFGFGGTNGSMVLSKYKE
>gi|99080023|ref|YP_612177.1| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Ruegeria sp. TM1040]
MAQYPNSFDKEDLLKCARGELFGPGNAQLPAPPMLMMDRITEVSADGGEHGKGHILAEFDITPDLWFFDC
HFPGNPIMPGCLGLDGLWQLTGFNLGWRGWQGRGYALGVGEVKLTGMVRPDRKMLTYRVDFTKAIQTRRL
TMGVADGIVEADGEVIYQVKDMKVALSES
>gi|99080024|ref|YP_612178.1| ferric uptake regulator family protein [Ruegeria sp. TM1040]
MTPTHEENANKWLMEAGLRPTRQRVTLAALLIGDGQHRHVTAESLFDAAKDDGAAVSLATVYNTLRAFCD
AGVLQEITVDGSKSYFDTNVHDHPHYYWEGEGRVSDAPSEELVIQSLPEPPEGMEIASVDVVIRLRHKAE
RG
>gi|99080025|ref|YP_612179.1| hypothetical protein TM1040_0184 [Ruegeria sp. TM1040]
MHYRALGDFLQTGKPILSKGPVALIFIEDEVEIGTTLRHHLNCGFKAVVALMPDAFDIPEDVAPLIHRVP
YDCSSANSVTMAMNQIIAAATPGCWLYYCYNSEYLFYPFCETRTVSEMLTFHTEERRNAMLTYVIDLYAG
DLAAHPGAVSIENAHLDKSGYYAQGRKDPETGHPRERQLDFFGGIRWRHEEHIPETSRKIDRIALFQAKP
DLTLQSDHTFNDQEYNTYSCPWHHNLTAAICSFRAAKALKRNPGSTFDIQSFKWHNSAPFEWHSRQLLDL
GLMEPGQWF
>gi|99080026|ref|YP_612180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruegeria sp. TM1040]
MSAPKKLYIKTYGCQMNVYDSERMAETLGGQGYVETQTPDDADMILLNTCHIREKAAEKVYSELGRFKGL
KAEKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPEMEAKAGTGEKVLDTDFPEEDKFEKLK
RRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTRGAEVSRPVDRVLREAEDLVERGVREITLLGQNVNAYHG
AGPNGDMTLAQLIWELDKIDGLERIRFTTSHPNDMMDDLIEAHGTCKKLMPYLHLPVQAGSDKILKRMNR
SHTAESYIRLIERIRAARPDILISGDFIVGFPEETEEDFQATLDLVEEVKYGTAYSFKYSTRPGTPAAER
AQVDPKEADDRLQRLQAVLTRQQREVQDSMVGRELGVLFEKAGRFAGQMVGKSDYLHAVHVADCDAKIGD
LRRVRIVSSGANSLAGELID
>gi|99080027|ref|YP_612181.1| OmpA/MotB [Ruegeria sp. TM1040]
MFDQVFAKTSAVLACVGFSIVLSGASPALAQDGNQIRAERYVPTIWVDPDGCEHWVMDDGAEGYMTTHMT
PDGKPVCRRGQLCGMMPTDQFFPTNGSTVNAAGRKRLQEWFQSVMPGTRSFVVAGHTDSRASDEYNMALS
QRRADAVAQIGRSVGARIKDVRAYGERSPRVPNRGAANLAQNRRVEIYCIRR
>gi|99080028|ref|YP_612182.1| putative lipoprotein [Ruegeria sp. TM1040]
MKTTKAIAILMLGLSLAACSDNGDKTRDRNFFDGGDGDLAGLVAGIWVDPQGCEHWIVDDGVEGYLDPRR
TPDGRPVCNSDLPRNTASGPFKSGSRFADPI
>gi|99080029|ref|YP_612183.1| PhoH-like protein [Ruegeria sp. TM1040]
MATSVLPPSSEHAQPPEVLLEFPDNRLLIELCGEFDRNLAEIEQRLGVQIVRRGNQLIVHGDADMRQQAG
ELLQVLYERLESGRPVEREDIDREIRLDRSDEDGGAGPDSQLEMFSGGKVEIKTRKKLVEPRTDAQKVYV
KNLFEHEMAFGIGPAGTGKTYLAVAVGVSMFIQGHVDKIILCRPAVEAGERLGFLPGTQEEKVDPYMQPL
YDALNDFLPGKQLAKLKEEKTIEIAPLAFMRGRTLSNAFVVLDEAQNATTMQMKMFLTRLGEGSRMVITG
DRSQVDLPRGVQSGLQDAERLLSPIPKISFNYFTAKDVVRHPLVAAIIEAYDKDENSA
>gi|99080030|ref|YP_612184.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MPTALDIRPADPASAPVKPLLEAHLKHTSTTSSPEACHALDLDALKAPEIHFFAAYDNDIAVGCGALKDL
GQGQMEVKSVHVAASARGRGIARALMLRLHAFAAQSGARTLFLETGSDQLPAFDAARALYERLGYTYCAP
FGDYTAHPESAFMRYACAG
>gi|99080031|ref|YP_612185.1| hypothetical protein TM1040_0190 [Ruegeria sp. TM1040]
MGSFIGRVLSKVLFFRGGSSYGGRMILDVVIEDARWDAAALEKQAQEAVSATLAYLELEDEDWEVTVLGC
DDARIADLNAEFREKPKPTNVLSWPAQELAAAQDGGQPTPPEVDFMGDAALGDIAISYDTCVKEANLAHK
SREDHVRHLLVHGTLHLLGYDHIRDGDATIMETLEVGILGKLGIPDPYIIEDGP
>gi|99080032|ref|YP_612186.1| CBS domain-containing protein [Ruegeria sp. TM1040]
MGDIEGSSNAAHRALQDIEATEPHVDGAETPGFLSKIFGSFSPSAEDDEPESGEDEVLADPPPGMMNLRR
LRVEDVAIPTAEIDAVPVTISREDLVRVFRDSGFTRIPVYEGTLDTPLGFVHLKDLALTYGFDCENDDFD
ITPMLRPLLFVPPSMPIGVLLTKMQAERRHMALVIDEYGGVDGLVTIEDLIEQVVGEIEDEHDSGEDQTW
VQEKPGCYVAQARTPLVDFENEIGIPLTQHEDVDGEEIDTLGGLVFMLSGRVPARGEVIEHPEGAEFEVV
DADPRRIKRLRVRLPGIAAE
>gi|99080033|ref|YP_612187.1| apolipoprotein N-acyltransferase [Ruegeria sp. TM1040]
MNLPQRLGRLGSYGLAAGAGALMAQGLAPVSAVWATPISLLVVAALFHHASSPRAAAVVGWLFGCGYFGF
GLSWIMEPFQVDAATFGWMAPFALMLMAAGLALFWGVAFWGAARLGRGNGRIFALIGGWTLMELARAYVL
TGFPWAGFAQLALIGDLALRAVPWVGPHGVALAILLAILPLVLIRRRPLLAIGPAALVGVVTIWLPQGQP
FGGHLPLTEQTVRLVQPNAPQAEKWLPEKRWSFVQRMLEYTAAEPEQAFGNRPDLVIWPETAIPTLQNYI
DDFRPALVEATRGSELLYGIQREENGRYMNSAVVMNAAGEALDIYDKMHLVPFGEYMPLPQFWERFGVFG
LASRAKGGYAPGTERRLLQTSAGRALALICYEGVFAQDVNAAPERPDYLVLITNDAWFGSYSGPYQHLVQ
AQLRAAEQGLPMVRVANTGITAVIDPYGQIRDSLALNTSGYLDARLPAPLPPTLYSGTGDWPAALVAAFL
LGVSVLPRLRLKRRRTLA
>gi|99080034|ref|YP_612188.1| S-adenosylmethionine synthetase [Ruegeria sp. TM1040]
MSRTNYTFTSESVSEGHPDKVCDRISDAVLDALIAEEPEARVAAETFATTNRVVIGGEVGLSDQAKLKDY
MGKIDEIARACIKDIGYEQDKFHHETVEITNLLHEQSAHIAQGVDAAGDKDEGAGDQGIMFGFATDETDA
LMPAPIQFSHAILRRLAEVRKNGTLPVLGPDAKSQISVRYDAGKPVEVTSLVLSTQHLDEKLTSADIRAL
VEPYIRETLPEGWLTDNTVWHVNPTGKFVIGGPDGDAGLTGRKIIVDTYGGAAPHGGGAFSGKDPTKVDR
SAAYAARYLAKNVVAAGLAHKCTLQLSYAIGVAAPLSIYVNTHDTGAVPDENIETAIRKCMDLTPRGIRT
HLGLNKPIYQRTAAYGHFGRAPEADGGFSWERTDLTEALKGAV
>gi|99080035|ref|YP_612189.1| hypothetical protein TM1040_0194 [Ruegeria sp. TM1040]
MAMAAWKKTIWVHAAVVCVALVALAGPALARKGSDKRLYVDGATLVFDTESVSKGQPGEIVVSDIDLFRS
MLQERSGIETLRLNSSGGSVYASSEIAWIVSDYGLHTQVDGECVSACVDIFLAGARRQMTLGSKIGFHRR
SWSPEAVEGYYNDLRENQGWDTPFVFGSWIYADTQREMYEYLSYLVERGVEAGFAIETLQVDSGDEWYPS
RLQLMAAGVLREAP
>gi|99080036|ref|YP_612190.1| tRNA (guanine-N(7)-)-methyltransferase [Ruegeria sp. TM1040]
MSDSDASRPSAIASDGPDAAGKHASGAPWRNFYGRFKGKTLKPNQVRDLDEMLPELSPGAVGWDENPERE
PLDLEAQFQGRDVWLEVGFGGGEHLVHQAESNPDVGIIGAEPYVNGVAMLLGKLRKSSAENVRVHAGDAR
DLMDVLPAQSLSRAFLLYPDPWPKARHHRRRFVTQEHLEPLARVLKPGAIFRVATDIPDYVRQTLEEVPK
AGFKWLAEGPEDWRKPWGDWISTRYEQKALREGRTPHYLTFQRQD
>gi|99080037|ref|YP_612191.1| nitroreductase [Ruegeria sp. TM1040]
MFLDKLNWRYAAKKMDPSKPVSEDKVAQIVEAIRMAPTSSGVQPFELLVIRNKDLREKIRPVSWDQAQIT
DGSHLLVFAAWDNYTEERIDAVVAQMVEERGDSELLQNYFANLKEMLLPRPAEVNHAHAAHQAYIALGFA
LAAAAELGVDSTPMEGFDPDQVDEILDLRAKGLRAKVLLPLGTRAEEGDWLLPMPKVRKSKAALVTEID
>gi|99080038|ref|YP_612192.1| cytidylate kinase [Ruegeria sp. TM1040]
MAFTIAIDGPAAAGKGTISKAVAAHFGFGHLDTGLLYRAVGAKMLDGDNPVAAAEALDVSDLDREDLRTP
EVAQAASKVAVIAAVRAALVDFQRAFARRSGGAVMDGRDIGTVICPEAEAKLFVTASADVRARRRFLELT
AKGSVITLDEVLADVKARDERDMNRAEAPLRPAEDAVIIDTSALSIDDAVAKAIAAIEARKPR
>gi|99080039|ref|YP_612193.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MADVDLSRMPPPQGLRVVTGGPLDPQALAELRAEAMRPSLEASGRFDPGRVRRRFLDRYDPTATAAFYDG
SELVGVLVLRQMPDHLYLDHLYLAPTHQGTGLGAQILQSIQEEIARPSRQEIRLIALTGSPAGPFYERAG
FQRTGSDGIDDSYRWRPQPA
>gi|99080040|ref|YP_612194.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Ruegeria sp. TM1040]
MSGHGTPIPMTSRRASPLKGEAHVPGDKSISHRSLILGAMAVGETKISGLLEGEDVLDTAKAMQAFGAEV
VNHGGGEWSVFGVGVGGFAEPENVIDCGNSGTGVRLIMGAMATSPITATFTGDASLNKRPMARVTDPLAL
FGAQSVGREGGRLPMTIVGAAEPVPVRYEVPVPSAQVKSAVLLAGLNAPGKTVVIEREATRDHSERMLAG
FGAEITVEDTKEGRVITLTGQPELKPQVIAVPRDPSSAAFPVCAALITPGSDVLVPGIGLNPTRAGLFYT
LQDMGADLTFENPRTEGGEPVADLRAKYSPDMKGIEVPPERAASMIDEYPVLSVVASFATGTTMMAGVKE
LRVKESDRIDAMAKGLRANGVTVEEGEDWWSVEGCGPEGVKGGGTAESFLDHRIAMSFMVMGMGAQNPVS
VDDGSPIATSFPIFERLMGDLGASIIRTDG
>gi|99080041|ref|YP_612195.1| 30S ribosomal protein S1 [Ruegeria sp. TM1040]
MAQTTSMEEFEALLQESFEMDTPEEGSVVKGKIIAIEAGQAIIDVGYKMEGRVELKEFANPGEAPEVSVG
DEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRVKGGFTVDLGGAVAFLPGSQ
VDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLSEGQAVDGVVKNITEY
GAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPWDLVGAKYP
LESVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEIDGAKRRVSLG
LKQTMRNPWEVFAETHPEGTQVEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNYRKGDMV
SAVVSEVDVEKERISLSIKALGGDKFADAVGGVKRGSIVTVEVTAIEDGGIEVEYEGMKSFIRRSDLSRD
RAEQRPERFSVGDKVDVRVTNIDSKTRRLGLSIKAREIAEEKEAVEQYGSSDSGASLGDILGAALKSE
>gi|99080042|ref|YP_612196.1| hypothetical protein TM1040_0201 [Ruegeria sp. TM1040]
MRPFSTGALALVAAMTVGFSSPGAAGNKHDHAHTHDEEVYKGYFDDSQIQPRTLSDWEGDWQSIYPFLVD
GTLDPVLAHKAEHSEKTAEDYRAYYEIGYATDVDAITIQGQTVTFTANGASYGGEYVSDGYEVLTYKKGN
RGVRYVFAKESGDALAPAFIQFSDHHIAPKKVSHYHLYWGDDRAEVLKELTNWPTYFPASYSGDDIVHDM
IAH
>gi|99080043|ref|YP_612197.1| integration host factor subunit beta [Ruegeria sp. TM1040]
MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMSRGDRVELRGFGAFSVKKRDARVGRNPRTGETV
HVEEKHVPFFKTGKLLRDRLNGKEE
>gi|99080044|ref|YP_612198.1| hypothetical protein TM1040_0203 [Ruegeria sp. TM1040]
MRYIRYAVWGVLAVVLVSVSLANRGLVSLKLMPEALAELVGFNPSITLPLFVVVLGGLALGVALGYVLEY
LREYKHRREARVKHGEVKKLSREVKRLKRQKHEGKDEVLALLDDAS
>gi|99080045|ref|YP_612199.1| N-(5'-phosphoribosyl)anthranilate isomerase [Ruegeria sp. TM1040]
MADIRVKICGMKTRADMEAAAAAGAAYVGLNFYAKSARSVTIAQAAALASDAPVGLAKVGLVVNPTDADL
DAITGSVPLDMIQLHGQESVERVAEIKTRYGLPVMKVIGVAEAADLDPIDLYAQVADQLMVDAKAPKGAK
LPGGNGISFDWQLLASKKYWQAPWMLAGGLTPENVAEAIRKTGARQVDVASGVESAPAQKDPDLMRAFVE
AAQAV
>gi|99080046|ref|YP_612200.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MKSIPSLDDLDLFARIAQAGGLAVVARQSGVSVPTLSRRMRALELQIGVHLFERGSHGYRVTALGRAFLS
ETRAFQAEAQRLRRMVATPLMAEVRITAGSWTSAFLAQQLPRFWQEDAQWRPAFLEADTRLDIARRGADI
GIRNQRPEQAWLAGRYTGLITYAVYAISDQVRGYVVLPENQAKTPSARWVWSHHGGEVAATARSPRMVAD
LACAGVGQVVLPRFAAAMFPALQQVGPEIAELSHEEWLVCHHDGRHDPPVRAALEGIAAVLTDTTLRPIG
A
>gi|99080047|ref|YP_612201.1| tryptophan synthase subunit beta [Ruegeria sp. TM1040]
MAEDLINSFMNGPDENGRFGIFGGRFVSETLMPLILSLEEEYEKAKVDPDFWAEMDDLWKNYVGRPSPLY
FAERLTNHLGGAKVYMKRDELNHTGAHKVNNVLGQILLARRMGKTRIIAETGAGQHGVATATVCAKFGLK
CVVYMGAHDVRRQAPNVFRMRLLGAEVIPVTSGRGTLKDAMNDALRDWVTNVRDTFYCIGTVAGPHPYPA
MVRDFQSVIGKEVRWQLAEQEGEGRLPDTVIAAIGGGSNAMGLFHPFLDDPSVNIIGVEAGGKGVDEKME
HCASLTGGRPGVLHGNRTYLLQDDDGQILEGFSISAGLDYPGIGPEHAWLHETGRAQYVSITDKEALEAF
QLSCAMEGIIPALEPSHALAHVTKIAPELPKDHIIVMNMCGRGDKDIFTVARHLGFDMSDTEEGRDLEE
>gi|99080048|ref|YP_612202.1| HxlR family transcriptional regulator [Ruegeria sp. TM1040]
MDARVEEDGTGRRQAYNVCLEPCAIERGMRIIGGKWTGSILWHLKDGPVRFNDLSRMIGGASKKMISERL
RQLETQGLITRTVMETAPVSVHYEITELGRTALGFLDELRKWSESLPEGLTTS
>gi|99080049|ref|YP_612203.1| NAD(P)H dehydrogenase (quinone) [Ruegeria sp. TM1040]
MSKILILNGAQPYPFAPGGLNATLAERARARLLAQGHEVRLTTVAEGYDVEQEVANHQWADAIILQFPVN
WMGVPWSFKKYMDEVYTAGMDGRLCAGDGRTADAPKANYGMGGTLGGTRYMISATFNAPAEAFDTPDEPF
FEGASMDDLLRPVHLNAKFFDMAPLPSFAAFDVMKNPEIDADLIRFDAHLDSLFAEAEDVAT
>gi|99080050|ref|YP_612204.1| glutathione S-transferase-like [Ruegeria sp. TM1040]
MSQPDIILYTANTMNGWKPLIFLHEAEIDYELVNVDFSKKEQHAPDYVKMNPNGKIPTIWDRSEGRAIFE
SGAILWHLAEKYGRFLSSDPVERSETLQWLFFQVGHIGPIMGQAMFFQRIAKPNGDEVPYAIKRYVDESR
RLLEVLDTRLAGRDWLVGTEMSIADIATYPWARSHFWATVEVEGLPHLQAWFDRLDAMPKVQEALQLPEP
RPSAFGKGDIAAAASANAARFKE
>gi|99080051|ref|YP_612205.1| DSBA oxidoreductase [Ruegeria sp. TM1040]
MTLRVDIVSDVVCPWCVIGYLQLAKAAAETGTDLEVHWHPFELNPQMAPEGENLREHLAAKYGTTPEDSR
AARLRLTELGAALGFAFDYADDMRMVNTFRAHQLIDWAEDQGKAHEMKRALFAAFFTRREDLNDVSVLAD
VAESLGLDRVAAVAMLEGGERADAVREKQQFWTSKGITGVPAMIFERQYLVTGAQGEETYARILTELSET
TPA
>gi|99080052|ref|YP_612206.1| Beta-lactamase [Ruegeria sp. TM1040]
MRARLMLLLSALVMCFAAPVWAETRLLDRASVVAPHDGRVSDFLAVDIGAGTRCVLSGSDLTRRHAPWSS
FKIPNFVIALETGVATGPDHWRAWDPSLRPAAGFWPKSWRQGQTLETALQRSVVWYFQDIARDVGGSRYR
EILKRWSYGNAEAPDGDDGFWLYGPLAISVEEQVAFVSALLSGGIARSQDTLAALFAATRDSEDKGRIIY
GKTGSGPLEQGRAGAGFEGWYVGWVTRQDRAPVAFAHYVRARTYADLRVFRRDQSLILLEACGF
>gi|99080053|ref|YP_612207.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MTPTPRTFSHIGLSVPDLDAAVKFYSEVLGFYVLMPPSKVVEDDSAIGVMCTDVFGPGWEHLRIAHLSTG
DGIGIELFEFAGNHAPDDNFAFRRHGTFHFAIQDPDLEGLLEKIIAAGGKQRMPVREYFPGEKPYRMVYV
EDPFGNIFELYSHSYELTYSAGAYA
>gi|99080054|ref|YP_612208.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MVIILVLNSTWLETFTVLAEEGHFTRAAARLNMTQPGVSQHLRKLEQQLGRALISKEGKRFTLTSAGEAV
RDLGLARRVEEQALRDTITRDDPDRGELRIACSGSFAMLFYPRAIALMKEAPGLVIHVEATPQARVLEGV
LAGHFDLGIVSDVPHHPRVEAQQLGQEELCLLLPAEVEDPVSFETLEALGLVAHPDVANYADDLFSRNFP
IDFAGADRLKLRTYINQISQIPSPVAAGVGYTLLPRSGLAAFAQSAQIRTARLPQPRYRELWRITRRGRI
ASARLKRVLAVVEDIAATLG
>gi|99080055|ref|YP_612209.1| peptidyl-tRNA hydrolase [Ruegeria sp. TM1040]
MKLFVGLGNPGAKYAGNRHNIGFMALDQIASDHGFSPWKSKFQAQMSEGTLSGEKVILLKPQTFMNNSGQ
SVGEALRFFKLTPADVVVFHDELDLAPSKCRVKNGGGHAGHNGLRSIHAHIGADYGRVRLGVGHPGHKDA
VAGYVLRDFPKADQGWLDDLMRGLSDGAAALATGDSGRFMNAVALRVAPPRSSTGEASKGRKKAQKSEPG
VAKTPAKAATPEAPAAGDIPAAPEDSRSPMQKLLDKFK
>gi|99080056|ref|YP_612210.1| hypothetical protein TM1040_0215 [Ruegeria sp. TM1040]
MKDAISGRSQSPAGARLLHRLGAKAAVIACGLSVAGCAAVESGPAVPAKSGSTVFEARQSLAFCAPQGPK
GAKAAVTSSYIASMLFLGILPGAVIAAAGEEHTRSQGAVNAVDDCLKDQGYERRELTAEETTAIKQRDRY
AREQLLSHLIGGGTLADYTGP
>gi|99080057|ref|YP_612211.1| 50S ribosomal protein L25/general stress protein Ctc [Ruegeria sp. TM1040]
MANEIPDLECQVRAGTGKGAARAARRANLVPGVVFGGDADPLAIQIPYNVLLKRLKAGRFKSTLFNLKVE
GHDDVRVICRDVQRDVVKDLPTHFDLMRLRRTSKINLFIPVEFINEEECVGLKRGGVLTVVRAEVELVVT
AGDIPEKLTVDLTGKAIGDVIHISDVTLPEGSKPTIDRDFVIANISAPSGLKSADDEAEGEDAEEAAAE
>gi|99080058|ref|YP_612212.1| hypothetical protein TM1040_0217 [Ruegeria sp. TM1040]
MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADIVFRKSQKHTS
AQRFHRRIRPFVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPEFAGHLSFDAYVGAVLSEDPP
PCAQIGSQYRMLSGRGGRILVDHLFAYERWDQLETFLADRFGHRIIFEPHNVSPFAKAELSPSLQRKLRA
ARRAEFDLHARLMDTDGKLQPRLRNMAD
>gi|99080059|ref|YP_612213.1| major facilitator transporter [Ruegeria sp. TM1040]
MGFCVGAFAAYVPQLKSQAGLSDAEFGLALLIGAAGAVGAMWLAPRVDRLLGHAAMTICALLLATAFLLP
GLAQSWAGFAAAMFLASGAGGLLDVVMNARLSGLEARSGRSLMNLNHGLFSLAYALAALVAGLVREAGVP
PVWCFAGILLVSGLLALGMRDEVPPAPAEDPQGNASLPLPGAMIVIAGLIVLIAFTAEQATEHWSALHLE
RAFGANAAEGALGPAILGFTMGIGRLSGQELVRRVAEGRLMQIAAALAASGLILAAFAPVQALAYAGFAI
LGLGVSTVGPTALAWVGKTIPSRLRAAAISRLVMIGYCGFFVGPPVIGFIAEVFGLRLALALMGAMLLCI
TVLLVPALRASARKSELIA
>gi|99080060|ref|YP_612214.1| L-lactate dehydrogenase (cytochrome) [Ruegeria sp. TM1040]
MPVITNIEDLKRIYARRVPKMFYDYAESGSWTEQTFRENSTDFDQIRLRQRVAVDMAGRSTASQMIGQDV
AMPVALAPVGLTGMQCADGEIKAARAAEAFGVPFTLSTMSINSIEEVSEATSKPFWFQLYTMKDDDYIRR
LIARAKDANCSALVITLDLQILGQRHKDLKNGLSAPPKLTPKTIANLMTKWAWGIEMLGAKRRNFGNIVG
HVEGVSDASSLGSWTAEQFDPSLDWGKIEKLKEMWGGKVILKGILDEEDAKMAAKVGADAITVSNHGGRQ
LDGALSSIRMLPRIMDAVGDQVEVHLDSGIRSGQDVLKALALGATGTMIGRAFVYGLGAMGQKGVTRALE
VIHKELDTSMALCGEKHVTDLGRHNLLVPEDFTGRWA
>gi|99080061|ref|YP_612215.1| hypothetical protein TM1040_0220 [Ruegeria sp. TM1040]
MFSYQYLTVLASQPVVTMHLRISASLSVNICWNHYVCVHEPAEQEASGELPEFRQLTNARLGVFVAPIAE
QPGVFVILVLAPANRSF
>gi|99080062|ref|YP_612216.1| histidine kinase [Ruegeria sp. TM1040]
MSDPAYDAMTPEELRAALMQERRLRAELEESMERKSQSLRRANASLVSLARQIDRMVKERTEDLARDRAE
AEAESAAKTQFLATMSHEIRTPLNGVLGMASALADTELAERQSQILGVLRESGQLLLNIVDDILDLSKIE
EGKLELERLPTDVVALIETVYRQFKPRIEAKGLNFSSIYGEGLAQGPAWVHIDPTRFQQVLTNLLSNAIK
FTDTGAIALSSSLVLQHDGELILCVAVRDTGVGLTDAQVERLFQPYMQADASVARSHGGTGLGLAIARQI
CERMGGTLTCRSHEGDGSEFCATFRAAPAEPVVSSHDPQDENELEALRAQRWKVLVAEDNRTNRMVLHHI
LRGYDLDLYWVDNGEEAVKTWRQERPDLVLMDVNMPQLDGVSATSVIRQEEADAQAAPVPIIAVSANALV
HQIKSYLASGMTDHVAKPIRKKKLLSAMARALKSRPTLPPVPEEPADKGAARVLSP
>gi|161899031|ref|YP_612217.2| tryptophan synthase subunit alpha [Ruegeria sp. TM1040]
MTRPTTRIDAKFAELAAAGKKAFVTYVMAGDPDYDTSLEVVKGLPAAGVDVIELGLPFTDPMADGETIQL
AGQRALEAGMTLERTLQLARDFRKEDDTTPIVLMGYYNPIYSRGVETFLSDAKEAGIDGLIVVDLPPEED
SELCLPAQAAGLNFIRLATPTTDDARLPRVLQNTSGFVYYVSITGITGAAEAEAADVGPEVARIKAATDL
PIIVGFGIKTPERAQTIASISDGAVVGSAIVAEIGAGKSPAEVLAFVKTLADGAHAG
>gi|99080064|ref|YP_612218.1| hypothetical protein TM1040_0223 [Ruegeria sp. TM1040]
MRKIIIAATLISTLLQSHALRAQELTFGLGHAEFNNEIAESGAYFSAEYLGPRDWQVWGFDAGLGVAGHI
HETGDVFFGGGLQAQRDIGRGWFIEASLMPGLYFENEARNDLGSNFEIRSLIGIGRDLRGGKRLSLALTH
MSNASLARENPGLNTITLRLHMPLGQRALN
>gi|99080065|ref|YP_612219.1| GTP-dependent nucleic acid-binding protein EngD [Ruegeria sp. TM1040]
MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDARLDKLAAIAQSKQIIPTRMT
FVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVDGRVDPVADADTIETELMLADLES
IEKRRANLVRKLKGNDKEAQQQDRLLAAAQAMLEDGKPARLVEVDAEDQKAWTMLQLLTTKPVLYVCNVG
ESESVEGNAHSAKVAEMAAAQGNAHVIISAQIEEEISQLEPEEAQMFLDEMGLAEAGLDRLIRAGYELLH
LETYFTVGPKEARAWTIRSGTAAPQAAGVIHGDFEKGFIRAETIAYDDYIACGGESGAKEAGKMRAEGKS
YIVKDGDVMHFLFNT
>gi|99080066|ref|YP_612220.1| inosine/uridine-preferring nucleoside hydrolase [Ruegeria sp. TM1040]
MTTKLIIDTDPGIDDAMAIFYAAAAPDIELLGLTTIFGNVTTKMATRNALRLLEAAELDLPVAHGAEKPL
VLPPFEPSAHVHGDEGFGDIPAVNPKGQAIAEDAADFLIRMAREHKGELVVCPVGPLTNIAIAIERDPEF
VKNCKRIVIMGGSLEAGGNITPHAEANIYHDPHAAEAVFAAAAGKVVMVGLDVTLKILCTPEDFDGIKER
SPELGGMLKDMSVFYIKFYQEVANLNGCSLHDPAAVIACTHPDLFKTRAVKLAVSVEEETSGKTQLAEDG
RGDTHVAMDVDAEAVKALFLKRLSLLP
>gi|99080067|ref|YP_612221.1| preprotein translocase subunit SecE [Ruegeria sp. TM1040]
MATINPVKFIQQVRAEVSKVVWPTRREVLLTTVMVFIMAALAAAFFAVVDLLIRTGLNGVLGLFG
>gi|99080068|ref|YP_612222.1| transcription antitermination protein nusG [Ruegeria sp. TM1040]
MAKRWYSVSVLSNFEKKIAEQIRTAVVEQGLEDEIDEVLVPTEEVIEIRRGKKVSTERRFMPGYVLVHME
MSDQGYHLISSINRVTGFLGPQGRPMPMRDAEVQGILGRVEEGVEAPRTLISFEVGEKVKVNDGPFEDFD
GMVEGVDDENQKLKVTVSIFGRETPVELDFTQVTKQV
>gi|99080069|ref|YP_612223.1| glycosyl transferase, group 1 [Ruegeria sp. TM1040]
MKLLVVSTNAALTMGGEAMKALQYMQQLLADGRDATLITHERCREALAGQLPEDRVIYVHDSRAMKACWR
TPGLGRLVNSFFHLEVARICRGFNPSEVVIHYLCPISPVEQRFPPKGYRYVIGPLSGNIFYPEGFRHLAG
RGLRLQHQAYRPLQMALGLLSRQFTRASTVLVSGYDRTREALGWAGCPEARMQDVWDAGLSPDFFARSRI
RPGKNPAHFVWIGRMVPYKGADLALRALALAPAEARLTLYGDGPDRAELEALARDLGLMSRVTFAGWLAH
GDLSEALGQYRALLFPSLKEANGIIVQECMAIGLPVVALRWGGPVGLADDTEALFVEAQNAVQVEQDLAA
AMARLTEDPALAEALSDAARRKAENEFPWPQVAQSWCSAALRAQDAAAAEPKHRGGG
>gi|99080070|ref|YP_612224.1| 50S ribosomal protein L11 [Ruegeria sp. TM1040]
MAKKLVGSMKLQVPAGQANPSPPVGPALGQRGINIMEFCKAFNAKTADMEPGAPCPTVITYYQDKSFTMD
IKTPPASYYLKKAAKIKSGANNPSRETAGTVTAAQVKEIAEAKMKDLNANDIEAAMQIILGSARSMGIEV
K
>gi|99080071|ref|YP_612225.1| 50S ribosomal protein L1 [Ruegeria sp. TM1040]
MAKLGKRTRAAREAFAGKSNLTIEEAVALVKANATTKFDETVEIAMNLGVDTRHADQMVRGVVGLPNGTG
KTMRVAVFARGPKADEAKEAGADIVGAEDLMETIQGGTIDFDRCIATPDMMPVVGRLGKVLGPRNLMPNP
KVGTVTMDVKAAVEAAKGGEVQFKAEKGGVVHAGVGKASFDEAKLVENVRAFVSAVAKAKPSGAKGAYMK
KIVLSSTMGPGVTLDVDGAVSE
>gi|99080072|ref|YP_612226.1| hypothetical protein TM1040_0231 [Ruegeria sp. TM1040]
MAQANRQLWRVGAIMNEPLAEVLKFCAWYLERGAHELVICFDNPDDPAIARLAGHPRIRAIPCTAAFWGA
LDLTPDVAFVTRQNAALTWIYHQYPDGWLLNVDADEFLYLVGRDVADLLAEVPAEKKSLRVRTAERVLTE
ENPTCAHFRLPMARPVRRAVYGEDAPLFGPRREGLVGHSHGKSFVRSGIRGLVLRQHWPRGLRDDGADEL
VLGHQDRAYLLHMIGARYDIWRDKVTWRSASRGFTTGLTERIAAAQAAPAPEESLRDLHRRLHAATPARL
SALRARDVLLTVPLELDALAEAHFGA
>gi|99080073|ref|YP_612227.1| 50S ribosomal protein L10 [Ruegeria sp. TM1040]
MDRAQKEKVVEELGQIFESSGVVVVAHYTGLTVSEMQDLRARARDAGGSVRVAKNRLAKIALEGKPCESM
SDLLTGMTVLTYSEDPVAAAKVAEDFAKENKKFEILGGAMGENALDRAGVEAVSKMPSREELIASIVGCI
GAPASNIAGAIGAPASNIASILSTIEEKAEAA
>gi|99080074|ref|YP_612228.1| 50S ribosomal protein L7/L12 [Ruegeria sp. TM1040]
MADLKALAESIVGLTLLEAQELKTILKDEYGIEPAAGGAVMVAAGGDAAGGAAEEEKTEFDVVLKNAGAS
KINVIKEVRGITGLGLKEAKELVEAGGKIKEGVDKAEAEDIKGKLEAAGAEVELA
>gi|99080075|ref|YP_612229.1| DNA-directed RNA polymerase subunit beta [Ruegeria sp. TM1040]
MAQTFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDAPQPLDGEGIKGVFQSVFPIKDFNETS
VLEFVNYALERPKYDVDECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSVKDIKEQDVFMGDMPLMTPNG
TFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFACRIIPYRGSWLDFEFDAKDIVFARIDRRRKL
PVTTLLYALGLDQEGIMDAYYNTVNFKLEKSRGWVTPFFPERVRGTRPTYDLVDAATGEIICEAGKKVTP
RAVKKMIDEGNITELLVPFEHIVGKYVAKDIINEENGAIYVEAGDELTLEYDKDGDIIGGSVKELLDAGI
TDIPVLDIDNVNVGPYMRNTMAQDKNMSRETALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV
GRVKMNMRLALDAEDTQRTLRKEDIVACIKALVELRDGKGDVDDIDHLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTR
ERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFARVNKYGFIETPYRVVKDGQVTDEVHYMSATE
EMRHTVAQANANLDEDNRFVNDLVSTRQSGDYTLAPNESVDLIDVSPKQLVSVAASLIPFLENDDANRAL
MGSNMQRQAVPLLRAEAPLVGTGIEEIVARDSGAAIMAKRAGVIDQIDAQRIVIRATSDLELGDAGVDIY
RMRKFQRSNQNTCINQRPLVKVGQTVEKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEKDERALQIEREEVERLARDRD
DELGILDRNIYARLRDLLLGKTAVKGPKGVRGNTVIDEDLLDNQLTRGQWWMLALEEEQDAQILEALNEQ
YEAQKRALDARFEDKVEKVRRGDDLPPGVMKMVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPF
LADGTPVDFCLNPLGVPSRMNVGQILETHMGWAARGLGLKIDDALQDYRRTGDLTPVRDAMREAYGEDVY
EEGISSMDETQLIEAAGNVTRGVPIATPVFDGAKEDDVNDALVRAGFDQSGQSILFDGRTGEQFARPVTV
GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD
VAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE
>gi|99080076|ref|YP_612230.1| DNA-directed RNA polymerase subunit beta' [Ruegeria sp. TM1040]
MNQEITNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDY
ECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRDLERV
LYFENYVVIEPGLTDLQYGQMMTEEEYMDAQDAYGMDAFTANIGAEAIREMLAAIDLEAEAEHLRAELAE
ATGELKPKKIIKRLKVVESFLESGNRPEWMIMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNN
RLKRLIELRAPDIIVRNEKRMLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRV
DFSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMST
NNVLSPANGAPIIVPSQDMILGLYYLTLEREGMKGEGKIFGNLDEVQHALDAGEVHLHSKVTVRVPQIDE
EGNEVFQRFETTPGRARLGSLLPKNAKAPFELVNRLLRKREVQQVIDTVYRYCGQKESVIFCDQIMTMGF
REAFKAGISFGKDDMVIPDNKWTIVDDTRDQVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKLTEAMMS
TISAVKKAEDGSDMEPNSVYMMAHSGARGSVTQMRQLGGMRGLMAKPNGDIIETPVISNFKEGLTVLEYF
NSTHGARKGLSDTALKTANSGYLTRRLVDVAQDCIVREHDCGTERAITAETAVNDGEVVASLGERILGRV
AADDVKRPGTEEVLLAAGQLIDERMADTIEEAGVQSMRIRSPLTCESEEGVCAMCYGRDLARGTMVNSGE
AVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFENTNTLTNANGEVLTIGRNMKLII
QDEHGEERSSHKLGYGTKLFVKEGQEVKRGDKLFEWDPYTLPIIAEKPGTAKYVDLVSGLAVREETDDAT
GMTQKIVIDWRAAPKGSDLKPEIILVGDDGEPVRNSLGNPLTYPMSVDAILSCEDGQKIEAGDVVARIPR
EGAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADESMEAVEYMVPKGKH
IPVVEGDFVQKGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ISDSGETTLLKGEHVDKQEFDAANEKALARGKRPAQGEPILLGITKASLQTRSFISAASFQETTRVLTEA
SVQGKKDKLVGLKENVIVGRLIPAGTGGATQQVRHIAASRDNVVLEARREEAEAAAALAAPMADDAADAD
FLVETPESRD
>gi|99080077|ref|YP_612231.1| hypothetical protein TM1040_0236 [Ruegeria sp. TM1040]
MAATFKMVGVIRFSLLTPTFNADRYPDLEAAAAAIFAPDRMALRLHLFETLCLPSLVRQSDAAFHLVVAT
SDRLPAVILQHLQALLAPHDHMQLIQFAPENHYQILKEAYRAVPQQGESHRILFRLDDDDALDRHYVARC
KRLAAGLVPLQTEAVSPIALAFNRGYYLIREEGQPPVVMDSCERAPLSAGTALVQPIAARGNPYRYNHRK
FAQHYTLYSDISVPSFVRTVHGDNHSTPAMMGLTARQSDAEMDADLQRHFDLSLSDLKAI
>gi|99080078|ref|YP_612232.1| hypothetical protein TM1040_0237 [Ruegeria sp. TM1040]
MLGSMAFFTFNDTLVKLVGETVPLWQIVTVRGVLASLLLLGLARAMGALRFDFSRRDWGLVLARCATEMG
ATYFFLSALLQLPLANVTAVLQMLPLTVTLCAALFLGEAVGWKRSLAIAVGFVGMLLIVRPGGADFGPAT
AYAVLAVGVLTLRDLVTRQMSAAVPSLTVTFLSAFAVMLFGLGLGIGESWQPMGLREWGLLAGTSVLILL
AYLFAVMTIRVGEVSAVAPLRYTGLVWALLLGWAVFGEFPSGLTLLGAVIVVLAGLFTLLRERQVAENT
>gi|99080079|ref|YP_612233.1| hypothetical protein TM1040_0238 [Ruegeria sp. TM1040]
MPRQQALPRWDRPAIVAQDYLRGDFEMQVIGLCRFSYPAIGGFQIEHQSHAERIAFLYDDARLQERFRLF
ETVALPSLRAQTDQDFDLVIVIGSCLPARHEARLRDLISGMPQARIEQHPPRRQREIMKDVLNRARRDPT
APCLQFRFDDDDAVSVDFVERLRSTIADCPGLVARHKSVAVDFNMGYVAEFGAEGIKAAEVHSPYNVAAL
GMYVRGGARVTIMNFAHHKILRFMPTVTLSDAPMFVRGWHGSNDSRQKPVKSLDLAPLTPAQIAEFVARF
AIREDKVRQVFSAT
>gi|99080080|ref|YP_612234.1| 30S ribosomal protein S12 [Ruegeria sp. TM1040]
MPTIQQLIRKPRQPKVKRSKSMHLEQCPQKRGVCTRVYTTTPKKPNSAMRKVAKVRLTNGFEVISYIPGE
SHNLQEHSVVLIRGGRVKDLPGVRYHILRGVLDTQGVKDRKQRRSKYGAKRPK
>gi|99080081|ref|YP_612235.1| 30S ribosomal protein S7 [Ruegeria sp. TM1040]
MSRRHAAEKREVLPDAKFGDRVLTKFMNNLMIDGKKSVAERIVYNAFDRVESKIKRAPVEVFHEALDNVK
PSVEVRSRRVGGATYQVPVEVRPERREALAIRWLITAARGRNENTMEERLAGELLDAVQSRGTAVKKRED
THKMAEANKAFSHYRW
>gi|99080082|ref|YP_612236.1| elongation factor G [Ruegeria sp. TM1040]
MAREYPLELYRNFGIMAHIDAGKTTCSERILFYTGKSHNIGEVHDGAATMDWMEQEQERGITITSAATTT
FWERTEDGETADTPKHRLNIIDTPGHVDFTIEVERSLAVLDGAVCVLDANAGVEPQTETVWRQADRYKVP
RMVFVNKMDKIGADFFNCVRMIEDRTGARAVPVGIPIGAENELEGLIDLVTMKEWLWQGEDLGASWVQVD
IRDSLKEMAEEWRGKMIEAAVEMDDDAMENYLMDGAEPDVATLRSLLRKGTLSLSFVPVLGGSAFKNKGV
QPLLNAVIDYLPSPLDVVDYMGFKPGDEEEVRNIARRADDDMAFSGLAFKIMNDPFVGSLTFTRIYSGVL
NKGDSILNSTKGKKERIGRMMMMHSNNREEIEEAFAGDIIALAGLKDTTTGDTLCDAKEPVVLETMTFPD
PVIEIAVEPKTKGDQEKMSQGLARLAAEDPSFRVETDLESGQTIMKGMGELHLDILVDRLKREFKVEANI
GAPQVAYRETIGHEVEHTYTHKKQSGGSGQFAEVKMIISPTEAGEGYSFESRIVGGSVPKEYIPGVEKGI
NSVMDSGPLAGFPVIDFKVALIDGKFHDVDSSVLAFEIAARMCMREGMRKAGAKLLEPIMKVEVITPEEY
TGGIIGDLTSRRGQVSGQEPRGNAIAIDANVPLANMFGYINTLRSMSSGRAQFTMQFSHYDPVPQNISEE
IQAKYA
>gi|99080083|ref|YP_612237.1| elongation factor Tu [Ruegeria sp. TM1040]
MAKEKFERNKPHVNIGTVGHVDHGKTTLTAAITKYFGDFKAYDQIDGAPEEKARGITISTAHVEYETEGR
HYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMPQTREHILLARQVGVPALVVFMNKVDQVDDEE
LLELVEMEIRELLSSYDFPGDDIPIIAGSALAAMEGRDPEIGENKIKELMAAVDEYIPTPERAVDQPFLM
PIEDVFSISGRGTVVTGRVERGVINVGDNIEIVGIKDTTTTTCTGVEMFRKLLDRGEAGDNIGALLRGID
REAVERGQVLCKPGSVTPHTKFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVTLPEGTEMVMP
GDNLKFEVELIAPIAMEDGLRFAIREGGRTVGAGVVSKILA
>gi|99080084|ref|YP_612238.1| hypothetical protein TM1040_0243 [Ruegeria sp. TM1040]
MVEFLFIVFLIGLLALLLRRDRRRRAIKIAVIDGSNLLYWKGEALSLQPVHDAIEALVAAGYRPCVIFDA
NAGYLVAGQYLDGARFAKLLGLRAAQAYVVPKGEPADPHILQLARKSGGIVISRDRFRDWADKFAPETAS
DRVVRGGYRRDKLWLDLPKDKVA
>gi|99080085|ref|YP_612239.1| hypothetical protein TM1040_0244 [Ruegeria sp. TM1040]
MRAVLMFGASIIVLAACSSGTSEGQVSVSYDNGAFSGKAGSNWSDEELRSNSFGVLCGEDGKVADLAISR
DSKGVATISGKCV
>gi|99080086|ref|YP_612240.1| 30S ribosomal protein S10 [Ruegeria sp. TM1040]
MQSQNIRIRLKAFDYRVLDASTQEIVNTAKRTGAQVRGPIPLPNKIEKFTVLRGPHVDKKSRDQFEIRTH
KRLLDIVDPTPQTVDALMKLDLAAGVDVEIKLQS
>gi|99080087|ref|YP_612241.1| 50S ribosomal protein L3 [Ruegeria sp. TM1040]
MRSGIIAKKVGMTRLFMEDGKQIPVTVLSLDGLQVVAQRTEDKDGYTAVQLGAGSAKVKRVSKAMRGHFA
ASKVEPKRKLVEFRVPADGLIEVGAEISAEHFLEGQKVDVTGTSIGKGFAGAMKRWNFGGLRASHGVSIS
HRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLEVVKTDADRGLVFIKGAVPGPKSGWVTVKDAVKK
KAPEGLPFPAALKTAAEAAAEAPAEGGEA
>gi|99080088|ref|YP_612242.1| 50S ribosomal protein L4 [Ruegeria sp. TM1040]
MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTG
GARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAEAEGKTAALAKQ
VANLGWKRALVIDGAAVNEGFARAAKNIEGLDILPSMGANVYDILKRDTLVLTKSAVEALEARLK
>gi|99080089|ref|YP_612243.1| 50S ribosomal protein L23 [Ruegeria sp. TM1040]
MSAKAEHYDVIRKPIITEKSTMASENGAVVFEVAIDSNKPQIKEAVEALFGVKVKAVNTTVTKGKVKRFR
GQLGKRKDVKKAYVTLEEGNTIDVSTGL
>gi|99080090|ref|YP_612244.1| hypothetical protein TM1040_0249 [Ruegeria sp. TM1040]
MTGIGTFILVNSKADPFKIGRRPLVRLFWNTFGTAFLAHIGFLSAFTTPAMVSTWVSSQWEEAEYQVLNP
HGSSSRLCGKRMDLGDRSSFQYELCGVPDVLRDSLEIGSRVVISGRKNWFGMVPDTIRRAEER
>gi|99080091|ref|YP_612245.1| hypothetical protein TM1040_0250 [Ruegeria sp. TM1040]
MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMYDRRADELVAD
GAPDDDLEVLEYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGLLSRLFGGAAKSSTSATAPEL
STEIASTFRSSKYSTVVVEEPTTLYRVYGGSARMIGGFWTRTKPQGPLQS
>gi|99080092|ref|YP_612246.1| hypothetical protein TM1040_0251 [Ruegeria sp. TM1040]
MSEINEILDSAGETYWQSKVEEAFARSGDRQRDLIASWFGGMGSFSDLMLMKINGHTVEEDQEPQLNERL
RMLRSELYSLIRARN
>gi|99080093|ref|YP_612247.1| 50S ribosomal protein L2 [Ruegeria sp. TM1040]
MALKSYKPTTPGQRGLVLIDRSELWKGRPVKSLTEGLTKSGGRNNTGRITSRRRGGGAKRLYRIVDFKRN
KFDVAATVERIEYDPNRTAFIALVKYEDGEQAYILAPQRLAVGDKVIASAKADIKPGNAMPFSGMPIGTI
VHNIEMKPGKGGQIARAAGTYAQFVGRDGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGR
MRHKGKRPSVRGVVMNPIDHPHGGGEGRTSGGRHPVTPWGKPTKGKRTRNTNKASQKLIIRSRHAKKKGR
>gi|99080094|ref|YP_612248.1| 30S ribosomal protein S19 [Ruegeria sp. TM1040]
MTRSVWKGPFVDAYVLKKAEAARDSGRNEVIKIWSRRSTILPQFVGLTFGVYNGQKHIPVNVTEDMIGQK
FGEYSPTRTYYGHAADKKAKRK
>gi|99080095|ref|YP_612249.1| 50S ribosomal protein L22 [Ruegeria sp. TM1040]
MGKDKNPRRVADNEAMAKVRMLRTSPQKLNLVAQMIRGKKVDKALTDLTFSNKRIAQDVKKCLQSAIANA
ENNHNLDVDELIVAEAWVGKNLTMKRGRPRARGRFGKILKPFAEITIKVRQVEEQA
>gi|99080096|ref|YP_612250.1| 30S ribosomal protein S3 [Ruegeria sp. TM1040]
MGHKVNPVGMRLQINRTWDSRWYADTKDYGDLLLEDIKIREFIKEECKQAGVARVIIERPHKKCRVTIHT
ARPGVIIGKKGADIEVLRKKIASMTDSELHLNIVEVRKPELDAQLVGESIAQQLERRVSFRRAMKRAVQN
AMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRADIDYAHSEASTPYGIIGIKVWIFKGEIMEH
DPQARDRKAQELQDGPAPRGAGGNRRGDR
>gi|99080097|ref|YP_612251.1| 50S ribosomal protein L16 [Ruegeria sp. TM1040]
MLQPKRTKFRKMHKGRIKGLAKGGSDLNFGTYGLKAVTPERVTARQIEAARRAMTRHMKRQGRVWIRIFP
DTPVTSKPVEVRMGKGKGSVDFWACKVKPGRVMFEIDGVNEDIAREALRLAAMKLPVQTRIVVREDW
>gi|99080098|ref|YP_612252.1| hypothetical protein TM1040_0257 [Ruegeria sp. TM1040]
MTSKKCIRLCVTGLCLAALMSCSDTSIRLESADPAAVTRISQAPYRYQHVTYWTLANGCTYSRGFSGRGG
WRWFLVGNPMSPEQGVVHEGCTFVFDASD
>gi|99080099|ref|YP_612253.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKFVTSVATVFALGFAGAVQAADVTLLTEDYAPLNFERDGQIVGLGADQVFEIMSRAGIAYEAELTQWSR
AIGQAERRPNTCVFSTTHTEERDPKFQWVEPLASDSTILVRKAGSDIAPATIEDARSYRTGTQTGDYTVG
VLEEAGFESIDLAPTQSATVKKLLQGRIDLMITSGSFLEAALADGIEIEEALVVSTTTMSLACSLKTDEA
LIARMQDALQSMIDDGTQAEIIARYE
>gi|99080100|ref|YP_612254.1| hypothetical protein TM1040_0259 [Ruegeria sp. TM1040]
MAQIDSLFVTRLYRAALSEHGPKIDPQEMEASCIAIAEDDEAGQDWCEENGYPGYTSYASLTDLPWRFPI
FADLVKSLDAHVAAFAQDLELNLDGRDLKLEDLWINILPEGGTHASHIHPHSVISGTTYVSMPDGASALK
LEDPRHAMMMAHPPRTKDCRRELRSFVYEAPNVGDVLLWESFIRHEVPMNMAEDERISVSFNYAWA
>gi|99080101|ref|YP_612255.1| succinylglutamate desuccinylase/aspartoacylase [Ruegeria sp. TM1040]
MARRSPFEIGGFHIPPGTRRTVDLPVSVLSDHTPVNMSAHVIHGSEDGPTLFVSAAIHGDEVIGVEIARR
LLRSRQFARLRGTLIVVPIVNTFGFLNHSRYLPDRRDLNRCFPGSEGGSLASRLAHLFMTEIVARSDLGI
DLHSAAIHRTNLPQIRVSPKAQDTLAYADAFGAPVVIRSGLRDGSLRKEAQKAGVDILLYEAGEGLRFDE
QSARVGVAGILRVMHALDMIPEDGVPLAEGVPVRAADSAWERAPAGGLLRAYKTTGEMVEAGDVLGIVAD
PFGEEEMELTASQTGLIIGRANMPIVNEGDALFHIASVNSATAEQQIETLNAQLDGAAMFDEDEII
>gi|99080102|ref|YP_612256.1| hypothetical protein TM1040_0261 [Ruegeria sp. TM1040]
MTKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGKTLYSVESSRD
WHKMMQRYFDENDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSIWDIDGFQHPDLILIDGRFRV
ACALAAMLRCTRKVTILFDDYRDRKRYRVLEEFLELKEMRGYMARFEVEPTALPREKMTRIIGLFARAL
>gi|99080103|ref|YP_612257.1| 50S ribosomal protein L29 [Ruegeria sp. TM1040]
MNAKDLRDKTVDELRDELANLKKESFNLRFQQATGQLENTAGIKAARRNAARVKTILNEKAAAAAE
>gi|99080104|ref|YP_612258.1| 30S ribosomal protein S17 [Ruegeria sp. TM1040]
MPKRILQGVVTSDANAQTVTVSVERRFTHPVLKKTIRKSKKYRAHDEKNAFKVGDTVRIIECAPKSKTKR
WEVLEA
>gi|99080105|ref|YP_612259.1| 50S ribosomal protein L14 [Ruegeria sp. TM1040]
MIQMQTNLDVADNSGARRVQCIKVLGGSKRKYASVGDIIVVSVKEAIPRGRVKKGDVRKAVVVRTAKEVR
REDGTAIRFDRNAAVILNNNNEPVGTRIFGPVVRELRAKNFMKIISLAPEVL
>gi|99080106|ref|YP_612260.1| 50S ribosomal protein L24 [Ruegeria sp. TM1040]
MAAKLRKGDKVVVLAGRDKGKEGTIASVDPKAGKAVVDGVNMAIRHTRQTQTSQGGRLPKALPIDLSNLA
LLDSNGKATRVGFREEDGKKVRFAKTTGETV
>gi|99080107|ref|YP_612261.1| 50S ribosomal protein L5 [Ruegeria sp. TM1040]
MLDDATYTPRLKTLYKDTIRGALKEEFGYKNEMQIPKLDKIVLNIGCGRAAVKDSKKAKSAQEDLTKIAG
QKALTTVAKNSIAGFRVREGMPMGAKVTLRGERMYEFLDRLITIAMPRIRDFRGVSGTSFDGRGNYALGL
KEHIVFPEIDFDKIDEAWGMDIVIATTANTDAEAKALLKAFNMPFNS
>gi|99080108|ref|YP_612262.1| 30S ribosomal protein S14 [Ruegeria sp. TM1040]
MAKKAMIEREKKRERLVAKYAAKRAELKEIANDESRPMEERFKARLKLAKLPRNSSATRLHNRCQLTGRP
HAYYRKLKVSRIALRELGSNGQIPGMVKSSW
>gi|99080109|ref|YP_612263.1| 30S ribosomal protein S8 [Ruegeria sp. TM1040]
MNDPIGDMLTRIRNSQMRGKSTVMTPASKLRAWVLDVLQSEGYIRGYESATDERGHPALEISLKYYEGEP
VIRELKRVSKPGRRVYMGVNDIPSVRQGLGVSIVSTPKGVMSDANARAANVGGEVLCTVF
>gi|99080110|ref|YP_612264.1| 50S ribosomal protein L6 [Ruegeria sp. TM1040]
MSRIGKKPVELPSGVSASLSGQTIEVKGPKGAQTFTATDDVTLTVEDNVVKVEPRGKSKRARQQWGMSRT
MVANMVQGVTQGFKKELEIQGVGYRAQMQGNTLKLNLGYSHDVDFTAPEGVTITAPKQTEIVVEGADAQA
VGEVAAKIRDWRRPEPYKGKGIRYKGEFIFRKEGKKK
>gi|99080111|ref|YP_612265.1| 50S ribosomal protein L18 [Ruegeria sp. TM1040]
MANSKRTLFLKRRLRVRNKLRKVNAGRLRLSVHRSNKNISVQLIDDVKGVTLAAASTLEKDLGFVGKNNI
EAATKVGSVIAERAKAAGVTEAYFDRGGFLYHGKVKALADAAREGGLKI
>gi|99080112|ref|YP_612266.1| 30S ribosomal protein S5 [Ruegeria sp. TM1040]
MAERENRRGNRRDREETPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQKGRVGFGKGKAKEVPEAIR
KATEQAKRQMIRVPLKEGRTLHHDMYGRHGAGKVVMRTAPEGTGIIAGGPMRAVFEMLGIKDVVSKSVGS
QNPYNMIRATIDGLKKEQSPRSVAQRRGKKVADILPKRDEAPAEAEA
>gi|99080113|ref|YP_612267.1| 50S ribosomal protein L30 [Ruegeria sp. TM1040]
MAKTIVVKQIGSPIRRPAEQRATLIGLGLNKMHKTRELEDTPSVRGMVNKIPHLVEIVEERD
>gi|99080114|ref|YP_612268.1| hypothetical protein TM1040_0273 [Ruegeria sp. TM1040]
MAHVLNTNIASSSFVARLRDAIEQTRSSWALYKEYKNTYNELASLTDRDLADIGVRRCDIADLARSHVYG
A
>gi|99080115|ref|YP_612269.1| 50S ribosomal protein L15 [Ruegeria sp. TM1040]
MKLNELRDNPGASPKRTRVGRGPGSGKGKMGGRGIKGQKSRSGVAINGYEGGQMPLYQRLPKRGFNKPNA
KKYAVVNLGLIQKFIDAGKLDAASITEDSLVASGLVRRKLDGIRVLAKGEFTAKATIAVTGASKSAVEAV
SKAGGALTVASEAAAE
>gi|99080116|ref|YP_612270.1| preprotein translocase subunit SecY [Ruegeria sp. TM1040]
MVSAAEQMAANTSWAALGKATDLRNRILFTIGLLIVYRLGTWIPVPGIDADALRQFMDTAGQGIGGMVSM
FTGGALGRMGIFALGIMPYISASIIVQLLTSMVPALEQLKKEGEQGRKKINQYTRYGTVLLATAQAYGLA
ASLEAGDMAFDPGLYFRLSCMITLVGGTMFLMWLGEQITNRGIGNGISLIIFVGIIAEIPAAIVQFFASG
RSGAISPAVIIAVIVMVVAVIMFVVFMERALRKIHIQYPRRQVGMKVYDGGSSHLPVKVNPAGVIPAIFA
SSLLLLPTTISTFSQGSASSPVMSWLLANFGPGQPLYLLFFTAMIVFFAYFYTFNVSFKPDDVAQNLKNQ
NGFVPGIRPGKKTAEYIEYVVNRVLVLGSAYLALVCLLPEILRNNFAIPVYFGGTSVLIVVSVTMDTIQQ
VQSHLLAHQYEGLIEKSQLRGRNKKRTKRGPSRR
>gi|99080117|ref|YP_612271.1| adenylate kinase [Ruegeria sp. TM1040]
MTNIILLGPPGAGKGTQASHLVKTRNMTQLSTGDMLRAAQSSGSEMGKKVAAIMAEGKLVTDQIVIGLIR
ERLQEGSEGGFIFDGFPRTLAQADALEKLLTEMGLKLDAVIEMQVDDEVLVKRIVNRAEEARAAGKEARA
DDNEDSVRIRLMEYYKKTSPLIGYYWAKGNLQRLDGMASIDEVQKSIAWILGD
>gi|99080118|ref|YP_612272.1| 30S ribosomal protein S13 [Ruegeria sp. TM1040]
MARIAGVNIPTAKRVPIALTYITGIGPASAKAICEAVNIDATRRVNELSDAEVLAIREHIDATYTVEGDL
RREVQMNIKRLMDLGCYRGLRHRRNLPVRGQRTHTNARTRKGPAKAIAGKKK
>gi|99080119|ref|YP_612273.1| 30S ribosomal protein S11 [Ruegeria sp. TM1040]
MARDKTRTKRKERKNIASGVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSRKSTPYAAQMAAEDA
GRKAQDHGVKTLEVEVQGPGSGRESALRALAAIGFNITNIRDVTPIAHNGCRPPKRRRV
>gi|99080120|ref|YP_612274.1| DNA-directed RNA polymerase subunit alpha [Ruegeria sp. TM1040]
MIHKNWAELIKPTQLEVKPGNDPARQATLVAEPLERGFGLTLGNALRRILMSSLQGAAITSVQIDNVLHE
FSSVAGVREDVTDIILNLKQVSLRMEVEGPKRLSINAKGPAVVTAGDIAETAGIEVLNREHVICHLDDGA
DLFMELTVNTGKGYVSAEKNKPEDAPIGLIPIDAIYSPVKKVSYDVQPTREGQVLDYDKLTLKVDTDGSI
TPEDALAFAARILQDQLSIFVNFDEPESAGRQDEDDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIG
DLIQKTEAEMLRTPNFGRKSLNEIKEVLSGMGLHLGMDVEDWPPDNIEELAKKFEDSF
>gi|99080121|ref|YP_612275.1| 50S ribosomal protein L17 [Ruegeria sp. TM1040]
MRHARGYRRLNRTHEHRKALFSNMAGSLIEHEQIKTTLPKAKELRPIIEKMITLAKRGDLHARRQAASKL
KEDKDVAKLFDVLGPRYKDRQGGYVRILKAGFRYGDMAPMAIIEFVDRDVSAKGAADKARLAEIEAVEDE
E
>gi|99080122|ref|YP_612276.1| hypothetical protein TM1040_0281 [Ruegeria sp. TM1040]
MFNQIITKAAFILGLSLAGALPAGSETVAGQEDAAYLSAREDWLAGNDIKALKALGVLARQGNTAAQILL
SRIAASKLTHQHVTADLPRRERIALLRKEQGLSGKDWLTEARSSSELVEALWTLNRTPDAMDAGQAVEIL
WDHGEAKAAINMMLEAWSRGEEDSVLKRIEASSHDLGPDGAQMLAFLKGDIDQWRVDELRGRLALEGLLE
PLTSLSDASRLAKVEEIPSLEPLSKYCAATCPESVALCLRSGLRAATVAGRFPQPFASPSQSLIPDEEYW
DSARFQGDFSALMKAGGGLTCE
>gi|99080123|ref|YP_612277.1| alkylphosphonate utilization operon protein PhnA [Ruegeria sp. TM1040]
MTDSLPPCPECGSVYAYAMDALLVCPECGHEWSAETASDAPVVRDSVGNVLSDGDTVTVIKDLKVKGSSS
VVKVGTKVRGIRLVDGDHDIDCKVPGIGQMGLKSQFVKKAAE
>gi|99080124|ref|YP_612278.1| NAD-dependent epimerase/dehydratase [Ruegeria sp. TM1040]
MRILFTGGSGKAGRHVIAYLLAQGHRVVNVDLTPLDLPGVDNRIADMTDAGQMHDVMHAWAGYDEMEQHR
SPPPFDAVVHFAAIPRLLMRSDNECYRINTVGTYNVIDAALKAGVRKVIFASSETTYGICFAGGERKPEY
LPIDEAHPVVPEDAYAMSKVANEQAALSFQRRSGADIYGLRINNVIEPHEYKANFPAYMADPELRRRNIF
AYIDARDLGQMVQRCLDADGLGYEIFNVANEDHSVNLSTSEIISHYYRGIPKAEMGETETFYSIEKAKRM
LGFAPEHNWRMYLNDPREA
>gi|99080125|ref|YP_612279.1| hypothetical protein TM1040_0284 [Ruegeria sp. TM1040]
MRTPQTKPLLTLFDLQGLVFGVLMCSLGVVFLKAAGLVTGQTAGIALLLSYVLPLGFGPLFFMIGLPFLV
LAWVKRGAVFALRTVLVVLGISAGAQILPLYLSFDTLHIGIAALLGGACSGAGLIAIFRHNASAGGMTIL
GIIIEHRTGFKAGWFQLGVDACVFAVSALVLSPEQLIYSFVGAMFTNLCIVWNFDVAQSGTGRPGYGRAA
PKGASDD
>gi|99080126|ref|YP_612280.1| MATE efflux family protein [Ruegeria sp. TM1040]
MEQAKFLKGNLLRHITVMSLTSSVGLMAVFAVDFIDMVFIAMLGKEELAAAVGYAGAILFFTTSFNIGIA
IAAGALVARALGAGESVLARQQASNALIWGGIFSAIFALVIWFNLASLVALLGAKGRALDLAVAYLQIIV
PTLPLLLMGMAGGAILRAHGDARRAMMATIAGGVVNAALDPILIFGFDLELIGAAWASAASRVAVAVFAL
GPIFRHHGGLERPPFALFVAGLAPIFAISFPAILTQLATPVGQAFVTRAMAEFGEEAVAGMAVIARMSPL
AFGTIFALSGAIGPIVGQNYGAGNFDRVRRAFWDALLFTGLFVVAVTAILFVLRAPIAALFDAQGTALSL
IYLFCGPLALAFFFNGAIFVANASFNNLGHPFHSTWLNWGRHTIGTIPLVWIGAHFFGAPGALIGQAVGG
VIFGLFAIWLARRVIAEVEARGGAPKGPGLFQRQARQIILAFSRR
>gi|99080127|ref|YP_612281.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Ruegeria sp. TM1040]
MTTLSQTPTHDLRITDMQELICPEALAVKHPLTDAARETVLSARASIQKILHGADDRLVVVVGPCSIHDP
EAALDYARRLAPLRAELGDALEIVMRVYFEKPRTIAGWKGLINDPNLDGSFRINKGLSVARKLCLDLSEM
GLPVGTEFLDASVPQYISDLVSWAAIGARTTESQIHREMASGLSCPVGFKNGTRGNVQIAIDAVRSAATP
HHFMALAPSGLAAIAATAGNPDCHIILRGGGGTNFDAESVDSACKKAEADGIRPQVMIDASHANSAKDPA
KQPEVLSDVAGQMAQGETRITGIMIESHLEQGRQDLPKDGDLSKLTYGQSITDGCIGWEQTEAELRKLAQ
AVKTRRTQGARLAG
>gi|99080128|ref|YP_612282.1| peptidase S1C, Do [Ruegeria sp. TM1040]
MIRSLALPLTIALATALPLASPAETKIPQSQTEISLGFAPLVKEAAPAVVNIYAKIIRQDRARSPFADDP
FFDDFFRQFAQPRPRVQNSLGSGVILSEDGIVVSNYHVVGEASDIRVVTNDRREYQAEVILADQASDLAI
LQLQDAEGLPHLGLRNSDEVEVGELTLAIGNPFGVGQTVSSGIISGLARTGTGGGQGFGYYIQTDAPINP
GNSGGALIDVNGDLIGINTRILSRSGGSNGIGFAIPANLVREFVRQARAGAEEFQRPWAGMTGQPVDSDL
AEALGLGQVDGMLISELHPQSPFVEAGFEVGDVVLAVDGEPVNSPSEMAFRLSVAELGGTSAVTRVRQGK
TDTVEVALIEAPDTPAADPITLSERTPMPGLVVGRVNPQVITKMQLPLSTEGVVVMDPGPYAGRGGVRAG
DLIFAINGEAVEAPEDVANLLMSSDRWMRMDLMRQGQRVSLRFRL
>gi|99080129|ref|YP_612283.1| recombination factor protein RarA [Ruegeria sp. TM1040]
MADLFDSEEAGARAAQNGASDAPRPLADRLRPRTLAEVIGQDQVLGAEAPLGVMLSSGSLSSLIFWGPPG
VGKTTIARLLAQETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHM
EDGTILLVGATTENPSFELNAAVLSRAQVLVLERLSLADLERLTQRAEQALERRLPLSPEARDALHQMAD
GDGRALLNLIEQVSAWKVDQPLGREALATRLMRRAAKYDKSGDEHYNLISALHKSVRGSDPDAALYWFAR
MLEGGEDPKYLARRLTRMAVEDIALADPQAQAICLQAWEAYERLGSPEGELALAQAVIYLALAPKTNAGY
MAYKAARRLAKETGSMSPPKHILNAPTKLMAEQGYGKGYDYDHDAEDGFSGQNYFPDGVKRPVLYQPVER
GFERELRKRTEFFAKKRIQRQGE
>gi|99080130|ref|YP_612284.1| multicopper oxidase, type 3 [Ruegeria sp. TM1040]
MTSKSKRCVMNPSRRHVLAGLTACASLPALPRFAQASTETNVESAAHRLTLAPARQQIAPTDYPATDLWC
VNGTMPGETLRRTQGARLVVEVDNQLPQATSLHWHGIRIDNAMDGVPGVTQDPIQPGTRFTYDFALPDAG
TYWYHSHAQSVEQVERGLQGALIIEEPDAPDVDQDLPLVIDDLRVTAEAAIDANFAVPHDLSHAGRMGNI
LLCNGKMVADHPVKTGDRLRLRLINSANARIFTLGLQGLEGWVMAYDGMPLATPEALPDRLLLAPAQRVD
LFVDVTAAAGEDAFLVQFERDGGYELARFPVASGTRARRPAPSALPPNPDFPIDLPSARSVDLITEGGAM
AWLSGARFKGEDLSGQDLAQLGQFWAFNGSAGRPPEPFVTARLGETIRIRMVNDTRFPHAMHLHGMHFSE
VRADGSLGPLRDTLLMLQGETREIAFQAHNAGDWLFHCHMLSHHAAGMGTWVRVTA
>gi|99080131|ref|YP_612285.1| camphor resistance protein CrcB [Ruegeria sp. TM1040]
MRLVQSGHGGRDEPQNLTSCAPRAKGAGMLITVLNVALGGAIGASCRYLIGVGVLRALGPTGFPVGVLGV
NILGSALMGAFVVLAAHKGLTHLSPFVMTGVLGGFTTFSAFSLEAVTLFERGAYGQAALYIGLSAGLSIA
ALALGMMAARGVLT
>gi|99080132|ref|YP_612286.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp. TM1040]
MSGVQMITVTEDDGGQRIDRWLRRLFPHVNQGRIEKMCRKGELRLDGGRVKANTRVEAGQVVRVPPLAES
DMKPAEARPVKISDADAKMIRDCVIYKDDDVLVINKPAGLAVQGGSGTTKHVDGLSEALRFDAEDKPRLV
HRLDKDTSGLLVLARNRKAAQGLTAAFRHKNTRKIYWALVAGVPTPYLGEIKTGLVKAPGHGKSGEGEKM
IPVDPRDVDATPGAKRAHTYYATLYRVASRASWVAMEPVTGRTHQLRAHMAGMGHPIIGDGKYGGSGQEN
LGDGWGAQIGGLISKKLHLHARRLQFEHPVTGKVVTVTAALPDHMKESWDTFGWTEDLAADDPFETLF
>gi|99080133|ref|YP_612287.1| HAD family hydrolase [Ruegeria sp. TM1040]
MTSALKLILFDVDGTLVDSQGTIVACMNEAFEREGLVPPSHAAILSIVGLSLPQALAQLAPEQSAQAQGA
LVEGYKQAYMAARQREGAAHSPLYPGAREVLDTLHAVPEYILGVATGKSQRGLDALIEGHDLGMFVTRQV
ADHHPSKPHPSMILTAMSETGIPPADTVMIGDTTFDMEMGRAAGVKTIGVDWGYHPAAHLRADHMLSDYR
ALPDLLRRIWSD
>gi|99080134|ref|YP_612288.1| ATP12 ATPase [Ruegeria sp. TM1040]
MSEWKQKRFWKAVSVEEDDSGFAVALDGRRVKTPAKTALLVPTRALADAIAAEWDAQEEQIDPLSMPYTR
SANAAIDKVAVQFAEVADMLAEYGDSDLLCYRAESPEGLVARQSESWDAALDWAEGALGARLLPRAGILH
APQDSAALETLRTRVHQMTPFQLAAFHDLVGLTGSLILGFATAEGWRALDEIWEISRIDERWQEELWGPD
DEAQAIEAQKKQAFEHAAAFYARA
>gi|99080135|ref|YP_612289.1| lysine-arginine-ornithine-binding periplasmic protein [Ruegeria sp. TM1040]
MNNSVFFGALTVAGLAAGAAAAGTLDDVKARDKLNCGVSTGLVGFSAPNANGEWEGFDIAVCRAVAAAVL
GDPSKVEYVPTTGKTRFTALASGEIDMLARNTTWTFSRDVDLKFEFVGVNYYDGQGFMVPKELGVSSAKE
LDGATVCIQTGTTTELNLADFFRANNISYEPVPIETNAEARQQYLAGACDVYTTDASGLAATRATFDDAA
NHVILPEIISKEPLGPLVRHGDNEWGDVVRWTLNAMIAAEELGITSANLAEKAAGTDNPEINRLLGTEGT
LGEMLGLEADFAQKALAAGGNYGEIFAKTIGEDTPVGLARGLNAQWTDGGLLYAPPFR
>gi|99080136|ref|YP_612290.1| amino acid ABC transporter permease [Ruegeria sp. TM1040]
MSTLTDPPKETFRLSMLIYDTRYRSATIQVVALIGFLILVGSIISNTAQNLADLGKEPSFRFLSEPAGYD
INQRLLDYDNQDSHMRASLMGLLNTLVVAVLGCITATILGVIIGVLRLSSNWLVARLMAVYVEMFRNVPL
LLWIVFIMAILIETLPAPRAFRGENPEATMSVFDSVAVTNRGVYVPEPLFHNSLGNIGVFGDSAVRFDVS
LDLIALLVVLGASLYVSKRIRLWADQTQESTGLRPTTWHMRSAVVVLPSALLLFVLGFHLGYPALKGFNF
AGGTHLRNSLIALWLALSLYTAAFIAEIVRSGILAISKGQTEAAAALGLRPKRIMNLVILPQALRVIIPP
LISNYLNLTKNSSLAIAVGYMDLTGTLMGITMNQTGRELETVLLGMLVYLTISLLISSVMNWYNNRVKLV
ER
>gi|99080137|ref|YP_612291.1| amino acid ABC transporter permease [Ruegeria sp. TM1040]
MSDISFVRTEMLPPKEPPASEVGVLGWMRANLFSNWFNSVLTLVSLYFVIQILIGLITWAWVPTWSAGSL
PECRVIFEELGRTGHNAGACWGVIAERWPQLLFGFYPNGSEPGTADLRWRPVLAFLLLFVALAPVLFADK
VPAKLIYFSAAYPFLMPWLLWGGTVWTPVMIAAGFVVGYFVYKAVSQATSELIGLISGVVGAVVWWLFVA
SFIASVLAGIVPLALESVESRQFGGFMLSILIGVVAIGLSLPIGIVLALGRQSDLLIVKTLCVGFIEFIR
GVPLITLLFVASTLLNIFMPPGTNFDIIMRVFIMVTLFASAYMAEVIRGGLAALPKGQYEGADSLGLNYW
QAQRLIIMPQALKISIPGIVSTFIGVFKDTTLVSVIGLFDPLNLTNAIRADANWNGLVWELYGFIALLFF
VFCFGMSRYSMYLERKLQTGHR
>gi|99080138|ref|YP_612292.1| ABC transporter related [Ruegeria sp. TM1040]
MSELALDREIDRSKMKVSDEVAIQITDMNKWYGAFHVLRDINLTVNQGERIVIAGPSGSGKSTLIRCLNA
LEEHQAGKIVVDGTELSNDLKNIDKIRSEVGMVFQHFNLFPHLTILENCTLAPIWVRKTPKKEAEERAMH
FLEKVKIPEQADKYPGQLSGGQQQRVAIARSLCMMPRIMLFDEPTSALDPEMIKEVLDTMIELAEEGMTM
LCVTHEMGFARQVANRVIFMDAGQIVEQNEPEEFFNNPQSERTKLFLSQILGH
>gi|99080139|ref|YP_612293.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MIRPYSPSDKSTVLDIWRAASAIAHPFLSQRLVAEAEAMIRDQFLDLAETWMIAPGATPVGFIALLGNEV
GGLFVLPDHQGKGYGRALLDHVQARREALTLSVFAANHTARRFYEAYGFTPLEERLNPFFKHKEIVMRLP
S
>gi|99080140|ref|YP_612294.1| putative phosphohistidine phosphatase, SixA [Ruegeria sp. TM1040]
MTCTLFLTRHAKSAWNTDAPSDHARPLNTRGRRSAAALGAWVREQSSPPLQVLSSSAQRTRETYDLMALT
APATFTERLYHATPEILYDVLREATQPNVLLLGHNPGLLAFAHDIVKHPPPHSRFDDYPTGATLLVEFDI
AHWAEMQPHSGRVIDFVVSRELLGE
>gi|99080141|ref|YP_612295.1| hypothetical protein TM1040_0300 [Ruegeria sp. TM1040]
MAAPQFSPDLQNRYDQLSAALPPLGLMVYGSVHPKRVPVPGYDSGTLILIGAASTFWQVLSTAPEGRDNR
PDPVDRYSRRVIERLAHDHGAQKAEFPFGGPPYAPFVAWALASGRAFTSPSQLLVHDEVGMLISYRGALF
FDETFATPPPRLSRSPCASCAARPCLSACPVHALVDEGPYKLAACHNHLDTPQGAECMASGCIARRACPL
SDGAGRQPAQSAHHMRYFHRP
>gi|99080142|ref|YP_612296.1| acetylglutamate kinase [Ruegeria sp. TM1040]
MKTRDMNRDWIATAETLSSALPYLQRYDDAIVVIKLGGHAMGSDEGMESFARDVVLLRQVGVNPVIVHGG
GPMINALLDKLQIKSEFVNGKRVTDAATMEVVEMVLSGMVNKRIVQAINAQGGKGIGLSGKDANLITCEA
TDPALGFVGTPSEVNADMLKNLFEKEFIPVIAPIGSGTAGETFNINGDTAAGAVAAALKADRLLLLTDVA
GVKNAEGVVVTELKAADVEEMTAAGVIAGGMIPKTETALAAVRGGVRACTIVDGRVPNAVLLELFTDHGA
GSMIRS
>gi|99080143|ref|YP_612297.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MRRKTLLLTGASRGIGHATVRRFNAEGWRVITCSRQPFPKECPWGGGEENHVQLDLSDPSDTINAVGVIQ
ERLEDGRLDALVNNAGISPKGPDGERLSTLNTDLMDWAKVFHVNFFASVVLARGLREELAAAKGAVVNVT
SIAGSRVHPFAGAAYATSKAALAALTREMAHDFGPMGVRVNAIAPGEVETSILSPGTDKIVEKLPMRRLG
QPSEVADAIYFLCSEKSSYISGTEIEVNGAQHV
>gi|99080144|ref|YP_612298.1| PepSY-associated TM helix [Ruegeria sp. TM1040]
MALSQTTGVDSRPAAPNLSQKFYFAAWRWHFYAGLYVIPFLIMLAVTGLMMMFITQVDGRDGETLRVSVT
GVEMPIEAQMQAVLAAQPGAIVEWIAPKSADLATVYRIAPPQGGNRMVALNQYTGEVLEIWDRRAGWYDW
ADNMHGTLLIGETGDRLIEIAAGLGIVLVVTGLYLWWPRGNWRAALLPDLRARRRALWKNLHGVLGFWMS
GLLVVFLISGLAWTGIWGEKFVQAWSSFPAQKWDAVPTSDSTHAAHLNHGSTNDVPWALEQTPMPMSGST
AGTQGLAPGEAVSLGSVIALGRALGMEGRFRVALPRDANGVWTLNRDSMSGDSTDPFVDRTVHVDQYTGK
ILADVRFDDYSLAGKAMAVGIPFHMGLMGLWNLVLNTVFCLSMIFVCISGMVMWLKRRPTRAARLAAPPM
PEDLPFWKGAVLIGLFASLAFPLVGLTLLAVLALDVLILSNLPRLKRVVS
>gi|99080145|ref|YP_612299.1| hypothetical protein TM1040_0304 [Ruegeria sp. TM1040]
MAILIAGLIPAGWMPVTAQDGKVLLVLCTPEGVEERWVDLGAPVPAHDEDQSTSRDCPFAAQPTLAAHDA
VLLPLPLSGPERDLWARAPFTHHSAGFHWRYDARGPPALS
>gi|99080146|ref|YP_612300.1| ribosome biogenesis GTP-binding protein YsxC [Ruegeria sp. TM1040]
MQLPFPLAEEPDAAAMETGRKLFAGQSEFLKGVVAMSGLPPADRIEVCFAGRSNVGKSSLINALTGTKGL
ARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLAVVEKWQRLLKQYLSGRQTLRRAFVLIDTRHGV
KKVDEEIMKLLDTSAVTFQVVMTKADKVKEKDRAKILDQVRDALSKHPAAYPEIVLTSSEKGDGIATLRS
IIAHLD
>gi|99080147|ref|YP_612301.1| MOSC domain-containing protein [Ruegeria sp. TM1040]
MTATVRQMWRHPIKGIGAEPLTEVRLETGGPMPLDRAWAVLTGTSEDTGAWQPCRNFARGCFGPELMAIT
AETQGNQITLRHPKQGEITLDPATDGARLLEWLLPLYPAERPQPHTLIKAPAGGMADADFSAVAILSLTS
LKALGDALGQELDPRRFRGNLWIDGTAPFEEFDWVGRELKIGTARLEVVDRITRCRATETNPETGARDAN
TLKALREHWGHTDFGIRARVLSDGDIALSDSLEVL
>gi|99080148|ref|YP_612302.1| putative inner membrane protein translocase component YidC [Ruegeria sp. TM1040]
MDDQNKNLLLATALSFLVILGWYFFFPPPEEAPQPATEVTETAPQGDTTAPAAAPSAGAATAEVDAAAAE
TEITEDVPRLTIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLLSPAGQPHAYYALYGWAPGAG
LGIEDVPTANTLWQAEAGATLTPDTPVTLTWDNGKGLTFSREVSIDEDYMFSITQSVTNSSGASVALAPY
GTLARHGEPANLENFFVLHEGVVGMADGELSEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWM
STLIPAPGEAFRAIAKYDERRDIYQTDVVLPTVTLAAGESTSANTQLFAGAKEWATIREYERAGIEGFLD
SIDWGWFFFFTKPIFAVLHWLNAAIGNMGVAIIALTFLLKILVFPLAYKSYASMARMKELQPEMEKLRER
AGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQDLSVPDPTSL
FNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQRMIFAWMPWVFMFMLGGFASG
LVVYWITNNVITFTQQYLIMRSHGYTPDVFGNIKSGFKKDKAEKAEKK
>gi|99080149|ref|YP_612303.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
MSRVVFGPPMLAFLPAISLSAFWFGGESALLAVALGLPLTYAVLGGFSKSRETTPGRDELTGFLLAPGFE
THVRDVFDRTEGTGLKSALVVVEIDEFDALVAAHGQDAGDIVMQRVGERMRSILRHRDTIARLGRNRFAI
CLTPIMQLDLELCIQLAGRLQFRIEEPIKFGGTSLFVSCSIGICQRHRVPKDAGSSWLDCAVAALDEALV
VGPSSIRAYSSDTHVHLDRTVNLMEDAASALQNGMIQAWFQPQICTDTGRVSGFEALARWCHPVKGMIPP
SAFLPALEHAGLLQKLSQVMVEQALTALKSWDAAGLKVPTVGVNFATDELRDPGLVNRIRWELDRFGLTP
DRLTIEVLETVMTDQPDEVVARNITALGEMGCHIDLDDFGTGHASIASVRRFRVSRIKIDRSFVTKADHD
PEQQKMITAILTMAERLDLKTLAEGVETAGEHALLAQLGCDHVQGFGIGRPMPFDQTIDWVINHEAKLQD
APAIGRQRP
>gi|99080150|ref|YP_612304.1| PP-loop [Ruegeria sp. TM1040]
MLDQDLDDIHPLFQGAPQTTEFKKLRKRIVRYTREAVEQYGMVERREDGSLPKWLVCLSGGKDSYTLLAV
LYELKWRGLLPVDLLACNLDQGQPGFPATVLPEFLEKMQVPHRIEYQDTYSIVMDKVPQGRTYCALCSRL
RRGNLYRIAREEGCSAVVLGHHRDDILETFFMNLFHGGRLATMPPKLVNEEGDLFVFRPLAHVAEADCEK
FARAMNYPIIPCDLCGSQDGLQRQQVKQILDTWESNSPGRRQVMFRALMNARPSHLLDPKLFDFTGLALK
NIDNSTETEEIPELR
>gi|99080151|ref|YP_612305.1| hypothetical protein TM1040_0310 [Ruegeria sp. TM1040]
MRYLWRAALMMGALVAMLGLANCGRPSLEDEKLSDQKLNLEEYFDGKTVAYGQFKDRFGTVRRRFKVEID
GTWDGEQLRLNERFAYADGSSETRNWVLTKTGPDDWVGTAEGVQGEARGREVGDTFNWAYTIDLPLPDGD
SMRVDFDDWMWLLEDGRLLNIAYMERFGVTLGEVTIFFEQR
>gi|99080152|ref|YP_612306.1| hypothetical protein TM1040_0311 [Ruegeria sp. TM1040]
MRLLARLIALPVRGYRLLFSPWVGFNCRYQPTCSAYALDALERHGPFKGTYLMLRRIGRCHPFGGSGYDP
VPGADPKHDRCCGRTP
>gi|99080153|ref|YP_612307.1| ribonuclease P protein component [Ruegeria sp. TM1040]
MASTADQGIQPPAVSVCASSPQEAQAAAKPVKTRAGMVLLTKRGEFLAAARARKQGTRSMMVQGRKRGDE
GSLRVGFTCSKKVGNAVTRNRAKRRLREIARLLLKEHGKPGWDYVLIGRAGETTTCPFEQMQKDFLYALR
KLHGS
>gi|99080154|ref|YP_612308.1| 50S ribosomal protein L34 [Ruegeria sp. TM1040]
MKRTYQPSNLVRKRRHGFRARMATKAGRKILNARRARGRKSLSA
>gi|99080155|ref|YP_612309.1| hypothetical protein TM1040_0314 [Ruegeria sp. TM1040]
MMSDTPSSPKRKNWLRHLPLALVAVGALVGAVTLGDVLSFETLRDNREALLAFRDQNYLGLVLVFLVAYV
AIVAFSLPGAAVASVTGGFLFGLVAGTGLNVLAATIGAMAIFLAARWGLGAALSAKIESSEGRIRRLKSA
LHDTEIEVLLLLRLVPVVPFFVANLLPALVGVRVWNFFWTTALGIIPGAIVFTWIGVGLGEVFDRGESPN
LSLLWEPHIIGPILGLCALAALPILIKALRGTSEV
>gi|99080156|ref|YP_612310.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region [Ruegeria sp. TM1040]
MASIKCDLLIIGAGSGGLSLAAGASQMGADVVLLEGHKMGGDCLNYGCVPSKALLASGHIAHTQAHAQAF
GIADQAAEVDYAAAKGHVQQVIDTIAPVDSQERFEGFGVRVIREMGRFISANEVAAGDTTITARRIVVAT
GSSPFVPPIPGLQDVPYLTNETLWALNERPEHLIVIGGGPIGMEMAQAHRRLGSKVTVLEAQAALGRDDP
EAAAFVLERLRNEGIEIREHTAAQAVRQEAGRIVVQTSAGTVSGSHLLVAVGRKPNLDGLNLEAAGVEVG
RAGIKVGPDLRSSNPKVYAIGDVAGQGQFTHLAGYHASVVIRSLLFGLPAKTKTNHIPRATYTDPEIAQV
GLTEAEAQETYAAKLEIARFDYSHNDRAIATRQAEGFIKVMVVKGRPVGATIAGPQAGELISTWSLAIAN
GMKMSQIAAMVAPYPTISELNKRVAGAYFSPRLFENSAVKRVVRLVQRWLP
>gi|99080157|ref|YP_612311.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MLNTLSGRFLILTTVFVMLAEVLIFVPSISRFRQDYLEDRLERAQIASLALLADDMIESDLERELLENAG
VYNVVLRRDEMRQLVLSSPIPSPITETFDLRDASAPTLIGDALTRLWSPGNEIIRVIGAPVRDAGLLIEI
TMETGPLRAAMIDYGLRILLLSAVISVLTAVLLFIAVRMVLVTPIKGVIGYMQRYAAAPEDARGIITPKA
GVIELREAEEALQKLQTELTHALKQRERLAQLGGAVAKISHDLRNILTSAQLFTDRIEMSEDPLVRRLAP
KLVNSITRAVSLCEGTLAFGRAEEPAPTFGRVCLSEIIDDVAESETLVASDVDVEICNTVPLPTMIRCDK
EQIFRVIMNLVRNARQAIIATGRNGRITVSMREEENAWWVEVADDGPGLPKKALDNLFTPFQGGARKGGT
GLGLAIAAELIKGHGGHLALARTGPEGTVFEICLPKGDGAV
>gi|99080158|ref|YP_612312.1| hypothetical protein TM1040_0317 [Ruegeria sp. TM1040]
MLRHLTTKFVLALLLAACSTTQGSVSRKSIQIDAMTVTWNDMLQLSSLHEAFPTEKGTSIYMFTRLFKDP
TYTPRKAQLSNGWTVTGNIGACDLILRKQPANAQQLYDECRTKLAALAAPKPQPELGLKEFINLAERAVQ
QEGSCQWLGYDRGLDLTVRAHGSLASFSDERLFFAKLKCS
>gi|99080159|ref|YP_612313.1| hypothetical protein TM1040_0318 [Ruegeria sp. TM1040]
MVVGCTCGSGFHDLRFRFGQARRTAASPSPRASCGRCFTDQNHDFAKVTNCAFQSFDQGAAFGKVGLCTR
RCFDLHVRPLSILGQKYLTFGSKSRGAAVPFSQALVADWGNGVRRSTPRLQIADAWRRARMWLCPSISS
>gi|99080160|ref|YP_612314.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MTRTGRPRSFDEDTALQAAMTAFWEGGYTGTTYRDLEQATGLRRQSLTYAFGEKPDLFRRALALYIDQRV
RKACALLAQDAPFRDNLSALLNAWEADASSGNGRGCLLVRATAEVGLDPHMTSEIRRGDTLLLQALTQAF
DRAQLAGEIPSAAPPEALARLVISVGNGAMTQAVARQDPEVSRAAHDALLSLLT
>gi|99080161|ref|YP_612315.1| carboxymuconolactone decarboxylase [Ruegeria sp. TM1040]
MTVFTHHSIETAPEAAKPLMEQAVKDYGMLPGLYQVMSASPELLESYFKLHELFERTALSVTERNIVWLT
INVEHDCHYCVPAHTAIAKMQGVDDEIVAALREERPLADPRLEALRQFTLILVRERGNAPKAEVERFLQA
GFEPRAILDILVGLAQKVLSNYTNHLAETPVDAPFQAFAWEKTAVAAE
>gi|99080162|ref|YP_612316.1| redoxin [Ruegeria sp. TM1040]
MLRDTPLCSFGWKAPDFTLRDPEGRPYTMSDHLGEKGLLVAFLCNHCPYVQAVADRLAEDTGTLLDEGIG
VLAVMSNDYHAVPMDHPAYMQRFAREVGWRFPYLVDEDQSVGQAWGAVCTPDFFGLNAAGALQYRGRLDN
ARFDAPAGRNRELVAAMRQIAMTGEGPQEQLSSMGCSIKWRSARG
>gi|99080163|ref|YP_612317.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MRKLPPLNAIRAFEAVARRLSFADAGDELGVTATAISHQIRHLEAYLGFQLIERRPRQIALTPAGQELFP
KLQMAFDTLGEAFAMLDKDVEQSLVRVTATYAFAERWLVPRLTGFFEQHPDIRVEVETDDAILDLRADRL
DLAIRYGPQTAATEHAEVLFSDRFIPLRLASQPEADLQESRLLGFRWRNADMGGPVWEDWFKAAGEPFPA
ERMTRFSDESSAFNALDRGLGLLLSSSALADEGLQSGRYQQVPGPELHGFAFYLVRNPLSRNKQGVRVFT
DWIREAAKES
>gi|99080164|ref|YP_612318.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MTLNIITTRRRLIKGGIAAAATLAAPSVLRAQGRRDLSMLTWAGHADPDVIGAFEEAHNVRIRAKEYVGG
DQMLAQIAQSPAGTYDVILSDAEYVVQLQQAGFIDPLSPEDYPFDDFFPEFQNFRGHWFDGQPYAVFLRF
GFLGLSHHRGAMSEAEARSYRSMWETRHEGRIGHFDWHLPNLGALSLMNGNAAPFDLGAGDWAVLTETMM
SLRPQVRGFYDYGGMLSALRSGEVTAIPGIGDWITGVLARDGADVTTTIPEEGGLQWTESLSIGTRSRNP
DLARQFIQYMLSPDGQVKTATLKAYPAMIPTRSGWARLNAEQPGEAKRQNMVLNGPNALDEIRAGRIRLR
ELPVQQSLETWNDAWTRYKNA
>gi|99080165|ref|YP_612319.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MTSYFSPAPASVRRTPFLFGRFWRALWVLPLPVWLLLFFAVPLGLLVAISFWSVVNYRLTPDATLSAWRY
VLGLEFLWASFWRSYGLAMASAVAISLLAFPASYAMAFVVAPRQRLILLGLAIAPFFTSYLVRVYSWQVF
LTEGGVIPSIVQALGGSGESLLNTYFALFLGHATLALPVVLILQTIALVNVDRTGISAAANLGARPGAIL
LQVILPAARPGLTLGLLFAFLLSYAEFVSASYLGGGSFQTLPILVTDLVRAGQQWPRAAVVALMMIASLL
ITAFVTVLWAYREKG
>gi|99080166|ref|YP_612320.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MPVHLKHALPKAFWIGGLVLVFVLLYAPILSAVMFSFSADRFPSLSLSGFSSKWYAQVLSDRAMLDALWN
SLRVAMLTALIATALGFAAAYADYRFRFTGQRAVLALALLPPTVPLVILGLAMLAFFSRIGIAGTLMAVV
AAHVVIAAPFAMAVCRLRLAQLDDSLEIAAQNLGALPHSALTRIVLPHTLPAIFAAFLITFAVSFDEYVI
SWFTGGLNQTIPVAVLTTLQGQVDPTIHVIGTLSFSVTLTLVLIALGVVLTQSSGAMSKEETT
>gi|99080167|ref|YP_612321.1| ABC transporter related [Ruegeria sp. TM1040]
MTHSHLKLDGLAKSYGSFVAVEEVSLDIAEGEFIAIMGPSGCGKTTSLRMLAGLETADRGEITLAGTRID
QLPVWERETPMVWQSLALFPFMTVRENVEFGLKMRGVSRTERRHRADDWLERLGISGYADRNVARLSGGQ
RQRVALARSLVLEPKVLLLDEPLSALDAHMAIKMQGELKKLQRELGITFVYVTHSHSEAFSLADRVVIMN
GGRVEQIGSPQDIFLRPRSKFVAQFVGGISLLEGKIAGTPGGKRYLETRDGKVQLAGSFTHAEGARADLA
VRADRISVTANPGWGENEIACTLVSEEFAGAVVNLHLTTASGHSLVAQVQQRELEQLDASIGAQVYASWH
PSDGFLLEPPQAEGGDARGRAA
>gi|99080168|ref|YP_612322.1| amidase [Ruegeria sp. TM1040]
MSAVLEATQEALSRAEQAPEVFLSRLPERARAEARESAARRSKLGPLDGATISWKDMIALKGVAARAGAA
HDPKLAPAVSDADVVTRARRAGLVSIGITNQSELAFSGIGYNPHHGTPLLEGRVPGGSSSGAAASVARGI
TRLAVGTDTAGSCRVPAAFQGVVGFRPTRGRYPMAGVMPLAPSYDTVGGFARSVSDMIALDAVLSGDETC
ADAASSLGVLHEVLGAGDVATGVAASFKAAVVRLAEAGLKMERARQSPLLDALALIAAGGWPGAREAVDT
YGHLLAPETALRLDPFVAERLRVSARLDREPLEKVKRQACSLRARMQTEDTLYVLPTVAIEAPLLAPLLA
DPEAFAATNAAALRLTMPASLLDLPAISLPIGQTEAGCWVGLQLVGPPHSDRRLLATSQTVEKLLMRKDK
LR
>gi|99080169|ref|YP_612323.1| polysaccharide deacetylase [Ruegeria sp. TM1040]
MIRNPIKWPNGARCACAITFDVDADSLIHIARPEDAHRRLYPISMGRYGPNSGVPRILDTYRRLGLKQSF
FMPGWVMERYPETVEAILAGGHEIGHHGYLHEDPAEQNAEDQTYWFERALEVHRRLTGRTPRGYRAPVYN
VTPEVLSLAVQHGLTYESSMMADDLPYRIDTPTGALYELPVHWGSDDWPPFAHFDEIGYKMPVMSPRRGL
EASFEEFEAQYEAGGLWIGIWHPFLTGRLARWRVVERWLEAVLARGDVWFAPLEEIAAYAASQEAEGLWQ
PHREPAAPYANPVLMEKTHDQF
>gi|99080170|ref|YP_612324.1| hypothetical protein TM1040_0329 [Ruegeria sp. TM1040]
MTSFDRPFEAARPDGENPSAHETLAEGGRLRPEATYTIPARQGRAIRMAQGEALMVINRDGSQIGDFWAF
VEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSNRRRPILTLLEDSSPGVHDTLVASCDVHRYAQLGHEGYH
DNCTDNLRMALGALGLRPTTVPCPLNLWMNTPVVEGGAMEWRPPVSRRGDHVLFRAELDVVVVISCCPMD
LLPINGEEAQPRALDVRLRPRPA
>gi|99080171|ref|YP_612325.1| (Acyl-carrier protein) phosphodiesterase [Ruegeria sp. TM1040]
MPTLLRIDASAQLEERSLTRHLTDVFTKEFLAKAPDTKVITRDVGREPIPAIDHKFIHAAFTPPEDREPW
MAERLALSDELVDEVIAADILVLGAPMYNYGMPTALKGWIDHVARIGRTFSFDLARGDTPIEPILSGKRL
VVLSSRGEFGFAPGGARAHLNALDPALAACAHYFGVAQADIETIAIEYQEFKDARHEASVASAETRTRAR
AADLAGAAVKAA
>gi|99080172|ref|YP_612326.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MRRLPPLHALRAFEAAARHLHFARAAAELHLTPTAISHQIRLLEEILGVKLFHRYPRPIRLSAEGAALYP
VLREGFDRMADVIAALSAPDARRPLTVSVTVAFASLWLMRRLPALRNEAGLNLKVEADNQPVDLSGGDVD
FAVRYARQPGPEGHWRALFEDRLVPLCAPDLLCRHPVVRDADVLGLPLIAYRWSGGAEAAPSWHGWSRAA
GLSQDVPEVSQHFSEEIHAIDSAIAGQGVVLASSVLAAASVAAGQLKPLSTTSLPGRSFWAVARNDHPRL
EEVERFAAWARDSAEAPVAP
>gi|99080173|ref|YP_612327.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MNKDRLPPLEWIRAFEAAARLGSFTAAAEELGLTQAAVSQRIGQLEQLLGTPLFHRRARAISLTVEGEAW
VPHVRLALEGLRDSTEAVFGTSRQRLTLSASQTVIELWLLPRLARLQTLTNAEISVQSMVVGAHDAPQDD
VIRIRYGSGNWPHAYRASLYKEEIAPVAAPALVAGAPHWTGLPRIACAGPRPGWHAWAARFGIPTTPLPS
LRFDTHLSALGAAKAGLGVFLASLPLCAEALDSGALVRLSTASLPHHETYWMLTSPEGVSRDQWQALTQA
ITEI
>gi|99080174|ref|YP_612328.1| gamma-butyrobetaine,2-oxoglutarate dioxygenase [Ruegeria sp. TM1040]
MPTLSVDPSGTYLSLETATGTQRFHAIWLRDNAQDAETRAPGNGQRLIALRDIPADTRIATAQINPDGVV
QVRFAPEDKTVDYDLAWLEAHSYDRAAPSTQGWLAQEIEPWDAGLMGNVPCGDFAALAEGGQALRDWLGQ
IVRYGFAKLKNAPVEPGGLFKVVDLFGFVRETNYGRHFEVRTEVNPTNLAFTGLGLQAHTDNPYRDPVPT
LQVLYCLESSAAGGENMVVDGFAAALRLREEDPEGFALLATHCAKFEYAGEASVCLTSRRPMIELAPDGE
LIGIRFNNRSCATITDVPFDKMEAYYAAYRRLGEIIDDTAMEVTFRLEPGEAFVVDNTRVLHARKGYSGE
GTRWLQGCYADKDGLRSAYHAMMRDARVEAAE
>gi|99080175|ref|YP_612329.1| hypothetical protein TM1040_0334 [Ruegeria sp. TM1040]
MKPDIDSLNRETIVAFIGSIFDRRGDEEYLGEPVTMGEHMLQGATIAERNGQPEEIIVGALLHDIGHFTS
EFGTFTMDDTEDRHHEDAGAEVLERFFPSVVTDCCRYHVAAKRYLCATRPEYFKRLSDASVHSLNLQGGP
MSPEEVSAFEQNPNLKQIIAVRYLDEAGKVAGMETPDFWHFAPMVQRMVDRHLSAV
>gi|99080176|ref|YP_612330.1| hypothetical protein TM1040_0335 [Ruegeria sp. TM1040]
MIALLGLFFAAFLAATLIPAQSEAVLVGLLLSGGHSALLLVMTATLGNVLGSVVNWVLGRFLTAYADRRW
FPVSEQQLSRAAGWYRRWGYWSLLGSWLPIVGDPLTLAAGVMKEPLWRFLLIVTLSKGGRYVVLAMATQG
FL
>gi|99080177|ref|YP_612331.1| major facilitator transporter [Ruegeria sp. TM1040]
MLSILADRTYRHLFLAQVVALLGTGLSTVALGLLAYDLAGNSAAMVLGTVFTLKMVAYVGIAPVAGAFAD
SVNRRQLLVILDLVRAGVAIALPFVTEIWQVYVLIFLLQSASAAFTPTFQATLPDVLPEEERYTRALSLS
RLAYDLENIISPTLAALLLTVMAYNTLFLGTAIGFLGSALLVVSVLLPSPKPSTRRGIYARTTRGIRIYL
ATPRLRGLLCLNLAVASAGAMVLVNSVVLIRGELGLSESALAWTLFAFGAGSMLASLALPRVLDTLKDRP
VMIAGATLMVGALLGLAAVIALADLSWAGVLVAWFLVGIGYSSTQTPSGRLLRRSAHAEDRPAIFAAQFA
LSHACWLLTYPLSGWLMTGLGPLPALVVLAALSGLGILACLRLWPKNAPDVILHDHEDLPADHPHMRQFG
TTPHQHAIIIDDLHRHWPTQG
>gi|99080178|ref|YP_612332.1| 3-dehydroquinate dehydratase [Ruegeria sp. TM1040]
MTQTVYILNGPNLNLLGTREPEIYGRETLADIEARCRTLCEGHGFELMFLQSNHEGQLVDWIQEARTSAC
GIIINPAAYTHTSVAIRDALSACEMPIFEVHLSNVHAREAFRHHSYVSAIATGVIAGFGSFGYVAALEKL
AQDVGA
>gi|99080179|ref|YP_612333.1| NCS1 nucleoside transporter [Ruegeria sp. TM1040]
MTDITSGYAASEGAAHAQLDRARLDPELYNEDQLPTTAAERTWNWLSISALWVGMVVCIPTYLLASYLIG
AGMSWDQAVLTILAANAIVLIPMVLVGHAGTKYGIPFPVLLRASFGPVGAKIPAVARGIVACGWFGIQTW
VGGSAIFVIVNKLTGGALAAEALPLLGISLGEFVCFLAFWGLHLYFIKNGTESIRWLETYAAPFLLAMGL
ALLAWAYSAAGGFGEMLSTPSAFDVGQPKEGQFWAVFWPSLTGMIGYWATLALNIPDFTRHARSQKDQLV
GQMVGLPIPMALFAFIASAVTSATVVIFGEAIWDPVQLSERMGGSAVIIALFALIVATLTTNLAANVVAP
AHGFANLAPSKINLKRGGYITAAIGIAMFPWILVNHIVGWLIAYSALLGPIAGVMLADYYLLRKTRLEVA
DLFKSNGIYAGHNGTNWAGVLALVIGILPNLPGFLAGVGLTDGTSPFFAMIYTYAWFVGLFVAGAAYLLL
SKMVNK
>gi|99080180|ref|YP_612334.1| hypothetical protein TM1040_0339 [Ruegeria sp. TM1040]
MQQLKQRQDFTARSAHTSRTETSRSPTQIKTISTSGNIKLALKSRPDAEGPADAANLPPKAQPKALSAGP
RQDAPTASEHAFGSGGDFGGQPRGAGFLSDERFAKPALAAAALAGLLILGATTFALLPETEVPVEVSQTA
AGTATPGPSDNLARLMQVAAVNPSPASAEVAPAADTPAMAAAATGAGDDIMSKMTASTLAALRSPAPTAA
AQTDTGGRAPQAGGGALYQLVMTAHAQGQSPAYIDQMLNAAYQRGQISVPEGLVRADGRVDTTTILSLFI
H
>gi|99080181|ref|YP_612335.1| peptidoglycan-binding LysM [Ruegeria sp. TM1040]
MRRLIAAAVLGVSALWAQASAAQTCGGMYTVQPGDSLSVIADRLYKNAGMWTAIHNRNIAAIGPKPGSIR
VGMRLEITCLNGLPVGLEGGRALSASAPTEATPVQIVAGNATVRQKINLLTGDDFEPFTGKSLHNGGLLT
DLVNAAMTEANPAQGFAIHWVDHWAAHFDPLLSNALLDIGFPWYKPNCAELPDNYRCQNLLFSDPLFETL
TLMFADAARPVSFGSDEDLYGKSICRPKGYDTSIFNENGRNWLREDKITLVVGATPGDCFDMVLEGKADG
VVLNEFTGRDKMKEMGIVERIQVVPQPISIQSHHVVVHKSHPQAQELLAIVNTGLRGIREDGSYQAIVED
HLARVWAGF
>gi|99080182|ref|YP_612336.1| hypothetical protein TM1040_0341 [Ruegeria sp. TM1040]
MQRDLAFWIGRLLLVVGLLSGVAPSAARAICDVDYVAQPGDNLFTIAEAHYGDRDRWTVIYYRNQGELAG
PSVIPGRTLFIPCPPNMPIESAPADAVVTQETTPAPTVQPAAELNLLTGGQYAPFTDPDLPEQGLITELV
RAALEVAPSPVPYAIGWDNDWSQHLSPKLESKQFDMGFPWAKPDCAADPSAVRCMRYHYSDPLMEVPVML
FVRSGGGMVYGSDADVIGKTLCRPLREDVFDLDTAARRWISDDKVTLVQPAAAGDCLRMVADGRVDAAAL
NLFVGASALVAEGLRGRVEPLEKPLSQVSLHVIISKTHWRGTSHLYRMNAGLRHLRESGRYDEIVSRHME
LFWSGLQ
>gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MRDWLQSFFVALGNRTYLPTWIALFVVGIAFAYAERQNQIINDQELRAEVQAEVGLIRSHLEGKLTADVQ
LIKGLVGALMAEQLMTQETFNEVASYAAGDRHEILNIAIAPDLVVTMVYPYERNKAVLGLDYNKNEAQRE
AVMRMRDSGEIVLAGPVNLVQGGTGFIIRYPVFAGEGADRRFWGMVAAVIDADALYAEAGLAAEDLPIEI
ALSGRDGTGHQGGVFYGDQNIHDHDPIVTDVFLPTGTWELAAIPRGGWPKQPGNLLELRLVLLAAGILII
VPTFMACRLSAVRRATINTLRKRETELERNQAELEQLSTVAQNASDSIVLSGPDQRIFWVNEAFSRMTGY
TVDEAVGKRPGELLNGPETDPATIREISEYISRGERLHREILNYTKSGKTIWVDTNLVPVLDEDGEINMV
IGIERDVTSQKQNAAELAVAKVAAEQADRTKTEFLANMSHEIRTPMNGIIGMADLLSETELHEDQEQYVQ
IIRTSSKALLKIINDILDLTRMESGKLSLEPVDFDLESCIENAVDILRPVASEKGLDLTVNYASGLPRTV
RADDGRLRQILVNLVGNAVKFTASGRVDVRVLCASTNPYRLTIDVQDTGIGMTSAQLHNIFDRFSQADAA
TTRSFGGTGLGLTISRLLAKQMDGDITVYSDPGRGSCFSLHIQCQAPLGLPGHIDADEAPDLDLIYGCKV
LLAEDNRTNRLLIRKYLSDLSVDLIEASNGQEAVELCAHHRPDLILMDMSMPEMDGLTATRLIRMPQNPH
QPPIVALTANAFASDREACLAAGMNGFLSKPINKRELLHGMAGVLDDPDNLRRVASG
>gi|99080184|ref|YP_612338.1| hemin importer ATP-binding subunit [Ruegeria sp. TM1040]
MTLHAQQISLSIGKKQILKDVTFAARAGALSAIVGPNGSGKSTLLKALVAELPSEGQISLNGRLLQDYAA
WELASLRGVLPQAAHLAFPFTVLEVVRLGLMAGPEAQNTRLPFEALARVDLEGYAGRSYQELSGGEQQRV
QLARVLAQVGAPMREGQPCWLFLDEPVSSLDIAHQLTVMDIARQFADGGGGVVAVMHDLNLTAMYADHVH
VMTGGETAGAGTVADVLTDQRLSEVYGCDLRIGKVPADAAVFVLPQTARA
>gi|99080185|ref|YP_612339.1| transport system permease protein [Ruegeria sp. TM1040]
MVALSDPSPGPYARDIRQLDRRILARRLSVVLVVLLALAIVVNLALGASGTSLWGALGKLLSGQDLSTME
RVVLWDIRLPRVLLCVLVGAALAVSGAVMQGLFRNPLADPGLVGVGAGAGLGAILSIVLGGLLPVGVQGL
FGHYVTPAAAFVGGWGSTLILYRVSTRAGRTSVATMLLAGIALGALAGAVSGILVYMADDNQLRDLTFWQ
MGSLAGATWEKSMIAGPVIVIAIAGATWLAHGLNCLALGEAAAAHMGISVQRMKNAAIFSVAAATGVAVA
ATGGIGFVGIVVPHVLRLATGPDHGTLLPNAALLGATLLLGADLISRTIIAPAELPIGIVTAVLGAPVFL
WILLKRRGMVDQ
>gi|99080186|ref|YP_612340.1| periplasmic binding protein [Ruegeria sp. TM1040]
MRHLLLVATATASLMTAPVAQAADRILSIGGSVTEIIYALGAEDKIVARDTTSSYPAEAEALPDVGYMRA
LAPEGVLSVNPNLIVSEAGAGPAETLAVLKQADITFVEVPDDFSAQGIVDKINAVGAAIGEPDAAATLAD
KVEGELVAVAERVARLPDSERKRVLFVLSTRGGRIMASGTNTAADGIIALAGGVNALSEFEGYKLMTDEA
VTRAQPDVILMMDRGGDHGMPDETLLALPAIVTTPAAETGSVVRMNGLYLLGFGPRTADAALTLARALYG
EI
>gi|99080187|ref|YP_612341.1| hemin-degrading [Ruegeria sp. TM1040]
MDQAHSPSANAQSALSPQVIRDLRAEHNALRARDFCDRFQIREAQLLAAYTGRGVTRLHAHPDAVMPQIE
RLGEVMALTRNASCVHERVGVYGNYKSGPHAAMILQPEIDLRLFPSHWIHAFALNEDTDTGPKRSIQIFD
AAGDAVHKIHLRETSDHAAWDEVVAALASGDTSDVLEVAARKPVEAPKSNPAKCEVLRDEWRKMTDTHQF
LRLTSKLKMNRLGAYRIVGAPFVERVPPEAVDAALQALAKSKTEIMLFVGNRGCIQIHSGPIETLRAMGP
WQNVMDPRFNLHLRLDHIKEVYVVNKPTQRGPALSLEAFDGEGNIILQIFGRNAEARDSRPAWADILSTL
PRLHTEETV
>gi|99080188|ref|YP_612342.1| TonB-dependent receptor, plug [Ruegeria sp. TM1040]
MQIKDMRGVLLCSASAMALALSAPVAKAQDVSEEDGFLGLLVLGNNKREVQTDTAAPETVINAEEIQDRQ
ASSIAELIDSVPGVALVNSGTPTGAGINIRGHGADGTYGANQKVQIQIDGASVGSEELYRIGTQLTTDPE
LYREVSVIRGTVGSFEYGSGVIGGVVRLDTINASDLTDGQVGLSGRQTLGYHGNSNARISSTILGWQPTE
NLEFLFNYTRREQDDYTDGNGDVVSDTASEVSSLLLKGKYSFGDNAAQSLTLSFNESTSDEKDVPYDAFA
GNAAFGNVDRLTETKSAVLEYAYNPLGNDLVDLTATLSYADQYIEQEQVSGTPFGIQDADHRYETTKLTV
KNSALFQAFGAKHTLRAGAEILRKERLNAASAPGGTDQRLALFAIDELDFDNGLTVTPALRYERQEIEAS
TDGNNIRAGETFNNSALMGGVSARYAFQNGFAVFGSVAYTAGFPIIDDVDYADYPTLMTQTEKAVTHEIG
ASFDRVGVFASDDVVMAKVNLWQTRLWDYTSSGSSFAEFDRQDTKGVEIEASYSHMSGFYVDMNANISSG
HWTKFQSGTNERYRERYDGMPPTNLALTLGKKFNEQLDVSWEGAFFKRFEDTPGFAVHNLRASYDIDTGF
LKEAKLRVGVDNLFDKQYQTHLATRPAPGRNIKVSLTAAF
>gi|99080189|ref|YP_612343.1| hypothetical protein TM1040_0348 [Ruegeria sp. TM1040]
MMIQSQVYKAVCALAVLTSLGGAAMAQDTATPPTAVPSPVGVAIELNALQDQAGACRLSFMAQNKAQIAI
ETAVYEAVLFDRAGEVMLLTLFDFRELPAGRPRVRQFDVAGVACADLGRVLINGASQCQSSGDGDLCEAG
LGLSSRTEVELLG
>gi|99080190|ref|YP_612344.1| MotA/TolQ/ExbB proton channel [Ruegeria sp. TM1040]
MSEIREFWTAIKASLLEVVEIGGPVVVVLIGLSIVSAATVLYKLWQFRRSGVGRHRSISMALEAYERGDA
KTARALLAQSSSYLVAPLQRAMQGGAGPDHARQSDRCDAEAEALFSRLETGLGFLDLVAQLAPLIGLFGT
VLGMIEAFQGLQAAGTSVDPTVLAGGIWVALLTTAAGLAVAMPVAAVHGWLSAAVERDRVFANHALRRVF
APDALTPVQLSPKEAA
>gi|99080191|ref|YP_612345.1| biopolymer transport protein ExbD/TolR [Ruegeria sp. TM1040]
MALRLGCKKRRRLSMTSLIDVIFLLLLFFMLSSTFSRFGSVDLMAANAGSGRSDETRPVFLKLAPTQMSL
NGEALALEGLGMRLDALRAQRQGTPHQLLLSLSGAVTSQRLVDVLAVLRRQPDLAVTVVE
>gi|99080192|ref|YP_612346.1| hypothetical protein TM1040_0351 [Ruegeria sp. TM1040]
MPIERRTKKSHREPTIALINVVFLMLVFFMVAGSLAPSLDPTVRLVQASELEAAPPPDALVIRADGSLHF
RGAELTSPEAYVRIIWEEEDAFTARLVPDRALPASTLLTIAKELRRLGAERVTLLSEQSLT
>gi|99080193|ref|YP_612347.1| TonB-like [Ruegeria sp. TM1040]
MIARSPLIACVSLFCALAAHAALLVDLEETAVEIEGGDTQAPAALGSSFADLVQGTATTVEADATRHTTP
VDPVPPAPTTQVSATPIAPVSTPASAPRSAAVSAPVMPAVPPVTEASPSPIAAAVAPVEAPAREVQPDQA
EALDTASELAPQESPRPLRRPEAAPQARDKAETQAPAAPAPRGNSTVNARAGSETGAEQQRASQAASTRP
AAGSGAGNAAASNYPGQVMRKISRVRKPRTSVRGVAHVSFVIGSGGQLASVRIRKSSGSTELDQLALQQI
RRAAPFPPPPVGARTQYSIAIKGR
>gi|99080194|ref|YP_612348.1| hypothetical protein TM1040_0353 [Ruegeria sp. TM1040]
MQRGGKTVYGASIGVLMLETRFPRIPGDIGHAESFDFPMQYRVVRGATPDRAVRQDPRALVEDFIAAGRD
LVDMGCDGITTTCGYLSLIQDQIKDALGVPVAASSLMQVPMVQALLPAGQRVGILTVSRPALTEAHLAAA
GVAADTPVVGTEEGRAFCDGFLNDRLEIDIEACRADLLGAAQQLCTTHPEVGAIVLECTNMVPFAYDIRR
ATGLPVYSIESFLKWFQAGLMPRRFQSELADPRWR
>gi|99080195|ref|YP_612349.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MKLRFRQLQAFHAIVETGTVTGAAGLLGISQPGVSNLLSQLEDQAGMALFERLHGRLLPTPEAELLFAEV
DTVMRGMSKVTQTMVDLKTRKLGQLQIASQHAMSFGFMPRLIARFASDRPELNISFQSQYSSKVQEWVWN
GLFEIGVCEMPLLYDTLTVYPLYVETMLALHKDNPLARHEVLTPELLAGEPFIVMGQDHMTHRRLREAFQ
DAGVPLRTRVHSHLFKNLLSFVQEGMGVALLDRFMFDYDMQGDVITRPFRPTIRMDMCVITSKSRPMSQL
GKEFLDLLLGELQHYSVEGRPLVPAERKRR
>gi|99080196|ref|YP_612350.1| D-amino-acid dehydrogenase [Ruegeria sp. TM1040]
MATQHIVVVGAGIMGAASAIWLRRAGLEVTLVDKGRPGMGASYGNACILARCAMVPVTTPGLIAKGPKYL
LDPNFPLYLRWSYLPRLLPWLGRYLKHANDQDTRRISQGLAGIVGDSVEQHKALTEGMPAAKWIQDSDYN
FVYRDRAAFEAESYVWSLRREAGFEPEIIEGDDVHAREPILSRDMRLLAVNKDHGYILNPGNYVQDLVRQ
LEEMGGRFVQAEVKDFDLMGGQITAVDTDQGRIACDRAVLSAGVWSAALMKRLGLDVPLEAERGYHIVFK
DPSQLPTAPMMLTEGKFVATPMDQGLRCAGIVEFGGLSDVKSKKPLEMLRRTVARTFPNLSHSAEEEWLG
FRPAPSDSLPLIGEVRGSGVFTAFGHHHIGLTGGPKTGRLVADMITGNWPNADTSAFDPMRFATQ
>gi|99080197|ref|YP_612351.1| TRAP dicarboxylate transporter- DctP subunit [Ruegeria sp. TM1040]
MTKMTLKTTVAGAALVLAAGVAQAEKWDMPMAYAASNYHSEMGVVFADKVRDYTGGEIDITVHPGGSLFK
GGEIKRAVQTGQAPIGERFMSAHANEEPLLGWDNLPFLATTYAENDKLWSVAKDKVNAALADQNLVTLYT
CPWPGQGFYFNKEVTSSEDTQGVKFRSYNTATATFAEELGMIPVQVEAAELSQALATGVAEAFISSGSTG
YDRKVWEQLSHYYKVNAWLPRNYVMVNKQVWDGLSAETQGAIQKAADETGAACAAKSEELANWYFEQLEA
NGMTVADAGPEFLAELQAIGAKMTDDWLASAGEDGQAIVDAFKAN
>gi|99080198|ref|YP_612352.1| hypothetical protein TM1040_0357 [Ruegeria sp. TM1040]
MRRVLRPWWAFLDRIYNGAGVVAAVFMVTILLLIVGQMIARWASLTFPGSTEYAGYAMAATSFFALAYTL
THGGHIRVSIFLNIGGRHHFWLDAGAMLISALTATYFARYAIKTNLLSHMLNDRTQGQDYAPEWLLTLVS
MFGTWPWNWGQLWAESGSGWVYTPVWLPQLPMSIGTVLLAIALWDYLSRMLVTGAPQIKGEALE
>gi|99080199|ref|YP_612353.1| TRAP dicarboxylate transporter- DctM subunit [Ruegeria sp. TM1040]
MSEIYTTVIFLFVLFALLGGSVWIGLALMGVAWVGMELFTTRPAGDAMITTIWSGASSWTLTALPLFIWM
GEILYRTRLSEDMFRGLAPWMRFLPGGLLHTNIAGCTIFAAVSGSSAATLNMVGKMSIPELRARGYPEYM
IIGTLAGAATLGLMIPPSLTLIVYGVTINESITKLFMAGVFPGLVLAGLFMLYIVGWHFFGPGERPKPEP
RLTFGERIAESRFLLPLFGLVFVVIGSMYMGFATATEAAAVGVLGALGLSLMQGSLSWGTFVESLMGATR
TSAMIAFILMGAAFLSLSMGFTGLPRALAGMIESYNLSPIALIAVLTVFYLILGMFMDGLSSVVLTMAIV
EPMIRQAGIDVIWFGIFLVVVIETAQVTPPIGFNLFVLQGMTRHEISYIAKTAVPMVALMLLMVVILVVW
PELATWLPNNIR
>gi|99080200|ref|YP_612354.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MPKLKTSSSIKRPGFGVFRSIRAKMSLILFVMGASFCVFAYMIHTVLSGIDRDMTTLNSKDLPGLELAGE
ISLASEQAKNTMLSLISATEVSVIDTASREAEAAAEHMMQLIGQLDAEMQPVFEAQATQVAGALSDLADA
RRDALNSEAQIEAEIEAFNIIVNDLGELMTGLVQAASVELNRGAANTYDAIDKSLKLLVERDFHNLELLL
EARAELNLLAGAAVAFGGTKDKETIARLQALADSSDARLQEISEEIEANAPEMLDVSLIHSALFTLQSVI
AQSLFPSESLRQAAMKSRADTDRFIVMAIDAQLLKLSASAARTSKENGDTLRELMTNEVGFLNVLMEISQ
HLNSFQVAALDVLTASDEQQVKDAAFSLSQASRNLANYTDFQDPLVVELLSRVAAFAEEEAGLAALRMNE
LSARAAAQEATQKTEATVLEIADRASEFAAQTLGVIRTMSSDISGEVATASRNMVISLAMAAGVFLTALL
VTQLLILRPLNRISASTERLAEGDRSPVTGFERTSTEIYRIARSLSVFRDGIVEKEELEEMAAAERQERE
RVQAKAVEALGTGLERLSSGDLTGHIHEELGEGYDRLRLDFNRTLDTLNDTVGQVIDTSASIRNGASEIS
QASQDLSHRTESQAATLEETAAALDEMTASVTSAAEGARDVERTSNEARSEAEASGDIVRSAVSAMTEIE
QSSGKIAQIISVIDDIAFQTNLLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSDAALEIKNLISDSS
KQVERGVDLVGKAGEALDNILNRVSHVSELISGIATGAQEQSTGLLEINTGMNQLDQVTQQNAAMVEEAT
AASQLLNTDAETLADLVARFQTANTARTPAAGAGDVGEDAGSEALAPTSWGDAQDIEWEATEVEEPFVPE
QTDWSDFDGDDTQATGT
>gi|99080201|ref|YP_612355.1| short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [Ruegeria sp. TM1040]
MSDPVLLEITDDIAVIAIANPPVNALSHSVRQGLDAAFDEIARRDDVKAAVIYGTDRTFIAGADIREFGK
PPQEPFLPDLINRIEACAVPVVAALHGTALGGGLEVALGAHYRIAVPSARFGLPEVTLGILPGAGGTQRL
PRLAGVEFALEAITSGRQIGAEEALAAGVIDRISDTADIREMGLSYARELIASGAQPRRTSDIAPEPVSP
DVFEQARAKLAKKARGQLAPQNCVKAVEGALSLPFAEGLANERALFQELMESDQRAALIHAFFAERQVAK
VPEINGVEPRAISRIGVIGGGTMGAGIAVSALLAGLQVTLIERDAEAVSRAETNVAKILQGSVKRGKLTQ
EKFDAIMREAFEASAEYATLATADVVIEAVFESMEVKKEVFTKLDAICKPGAVLASNTSYLDVNEIAAMT
TRPQDVIGLHFFSPAHVMRLLEIVVADETAPDVTATGFALAKRLKKVAVRAGVCDGFIGNRILSHYRKAG
DGAVLAGASPFEVDRALVNFGLAMGPYAVSDLAGLDIGWATRKRLAPTRDPREVYAEFVDRLCEAGHLGR
KTGKGFYVYDDGGQTPNAEVLDHIAEERAAKGIAAREIPEQEIVDRYMAAMINEAARVVEEGIALRPLDV
DVTLLNGYGFPRWRGGPMQYADTVGLEKVLADIERFAQEDDFLWQPAPLLKRLVAEGKTFADLNNA
>gi|99080202|ref|YP_612356.1| Acetyl-CoA C-acyltransferase [Ruegeria sp. TM1040]
MKQAVIVSTARTGLAKSYRGAFNDTHGAQMAGHAIEHAVARSKVDPALIEDAFIGCGYPEGWTGGNIARQ
AVVRAGLPVTVAAATVNRFCSSGLQALAMASHAVTMEGASAAIAGGVESISQMPPSRPAQRRDAWIEANK
PDVYMTMIETADVVAKRYGVSREAQDELALQSQMRTAAAQAAGKFDDEIVPITVTQKLTDKETKEVSYKE
VAFAMDDCNRPGTTLEGLAGLKPVRGEEHFVTAGNASQLSDGAAALVVMDADLAAKQGLEPLGALKGFVT
AGCEPDEMGIGPVFAVPRLLERHGLKVSDIDLWELNEAFASQALYCRDRLEIDPEICNVNGGSISIGHPF
GMTGARMSGHLLLEGKRRGAKLGVVTMCIGGGQGAAGLFEIF
>gi|99080203|ref|YP_612357.1| IclR family transcriptional regulator [Ruegeria sp. TM1040]
MMRDLEQDRRYANTLARGLKILRAFRPSDNGLGNLEISERTGIPRSTVSRLTFTLCALGYLTHGRHFDKY
RLGPAALALGNIASAAFGFVTVAAPIMQELANKVNALVGVAIQDDGTMLIVKTWRPEGSGAIWLDVGYRM
PVLTSSSGVAYLGALTQEEREKLEALLPEEGAEICEEVWQHQSAQLRRVGYACVAEDMRYSRAIHAVATP
FRPSEIGEPVSIFCGANVDDLSTEQMHVEVGPELVKAVNRLKLLTGHAVSAVASA
>gi|99080204|ref|YP_612358.1| glucokinase [Ruegeria sp. TM1040]
MWNLIADVGGTNMRLAAVNAEGEILEQARYDSKGTQNLEEACADFAAHRGSAPGRAVIAAAGVVRGGSVQ
LTNANQSFSERGIAVALQTERVKVLNDFEAAAWSLASVSAGDVTVLQGQAVFPKEPCLIIGPGTGLGVGA
LIWANGEPCVVPGEGGHVAIGPRTADEVAIFEALREEWPEIGMGPGLAVEAEGILSGTGLPYFYRAVARS
MELTAPLTTGAEIFQSAQARLDTAAVRAVSLFAQYLAGVAGDLGLVFAAKGGVFVTGGVAAANPWIFDAA
FVEAFNAGGRHTAWREELPLHLYHQPNFGLIGARNYLRAR
>gi|99080205|ref|YP_612359.1| hypothetical protein TM1040_0364 [Ruegeria sp. TM1040]
MTDSTLPSPQIFTFRGQPVIRDGELAELFSYTTGNLNKLVNNNADRFGEDFAFRLTDEEFAELKFQLGIS
KTHGGLRHPPMMYTEHGAVMAATLMRSPRAAEASRFVVRSFVAARRGLMAKAQGQNLPLSLPVNDLVPIA
GRERSGLVGKLDAALGRVLDAIADPVQETTVRDEARQIALEGLSAIKAHLKKQDIANEKTLAEVQKLLKE
AEAIDAEISARHIENNHRQMAYLAKQLRIVIEVQRYLDQGDVDTLLAVLKDLGT
>gi|99080206|ref|YP_612360.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MALSHPNPPEQALREAILNAGASPDGRLPPERILAAQLSISRTQLRGILDAMARDGLIFRRHGQGTFLQP
PPVQAAERLSTLAKRVTPRDLMEVRLDLEPALAAHAARRGSAKDKARLLQLMEHSLAADDIERYEHADDL
FHYKIAEMAGNPLFLSLFEEIRTLRRAGDWQRTRRAALTGDDIARLPALHRDIAQSICAGSAEDARAAMR
QHLQQVSGALRRGDAASGES
>gi|99080207|ref|YP_612361.1| hypothetical protein TM1040_0366 [Ruegeria sp. TM1040]
MLEFQTLLPLLGVAAGAGVAGGILAGLLGVGGGIVIVPALYFALGLTGMDPALTMQVAVGTSLATIVFTA
LSSGYGHYKKGAIDMALLKLWAPSILGGVVIGGVLGGLVSGIVLLVVFATIAMAVALDLMLRKPNDSPEP
RSFSKPVWAALGVFAGSVSAMMGIGGGTVCVPTLSFLGYDIRKAVGTSAAIGFIIGLPGAVIYMATGFGA
EGLPPLSLGYVNLLLAAVIIPLSTTFARVGVKLAHSIPRRALKLSFGVFLMATSLRMFADLAEQMGWL
>gi|99080208|ref|YP_612362.1| ROK domain-containing protein [Ruegeria sp. TM1040]
MQALASNAGGAHRPVMPDPRPYSTGASQSELRAYNERLLLTLLHQGGALPGSEMARRTGLSSQTVSVILR
KLEQDGLVLRGESQKGRVGKPSVPMGINPEGLFSFGVKIGRRSTDLVLTDFRGGLRAERQLRYAYPQPDD
VFEFIKTGIEDISADLSAEQQARICGIGVATPFDLWRWHAQVGAPKSSLTAWRALDPTIEIARFSPLRVF
VINDATAACRAEHMFGASSRWRDSIYFFIAAFIGGGVVLNHSVYEGGMGNAGALGPLPSQRADGSNCRLL
DSASIRELERLLNEADIDPRALWEQPQDWSAFAPQVDQWLEETACALARAALTTCAVIDFQAVVVDGVLP
RSIRQRLVDRIREELPKLDARGLILPDVQEGQIGPHASALGAAAKPLIAQYLLDTHAGFTATS
>gi|99080209|ref|YP_612363.1| periplasmic binding protein/LacI transcriptional regulator [Ruegeria sp. TM1040]
MKKLLLTTIAGVGLLAGAAQADEKVTACLITKTDTNPFFVKMKEGATAKAEELGMELKAFAGKIDGDHET
QVAAIETCIADGAKGILLTASDTSSIVPAVQQARDAGLVVIALDTPLNPIDAADATFATDNFLAGELIGQ
WAAAALGDDAANAKIGMLDLAVSQPTVGVLRDQGFLQGFGIDIGDPNKWGDETDPRIVGNDVTAGNEEGG
RKAMENLLAKDPMINVVYTINEPAAAGAYEALKSIGRENDVLIVSVDGGCPGVQNVKDGVIGATSQQYPL
MMASLGVEAIKKWAEEGVKPEPTPGKAFFDTGVALVTDQPVDGVESIDTTEGTNLCWG
>gi|99080210|ref|YP_612364.1| inner-membrane translocator [Ruegeria sp. TM1040]
MMSTPQSYEAAVAGSPDKVAEFDQGPQSFIQKFQHALHVTPSLVPLIVLVLSIIIFGLLLGSKFFSPFAL
TLILQQVGIVGIVACAQSLVILTAGIDLSVGAIMVLSSVVMGQFTFRYGLPPTLGVACGLLCGTLCGYIN
GWLVAKMKLPPFIVTLGMWQIVLASNFLYSANETIRSQVIAEEAPFLQFFGEKFKVGGAVFTYGVIFMIV
LVLVLAYVLRHTAWGRHVYAVGDDKDAAELSGVNTDKVLISVYMLSGLICAFAGWALIGRIGSVSPTSGQ
LSNIESITAVVIGGISLFGGRGSVLGTFFGALIVGVFTLGLRLLGADAQWTYLLIGVLIIAAVAVDQWIR
KVSV
>gi|99080211|ref|YP_612365.1| ABC transporter related [Ruegeria sp. TM1040]
MMEPILKGRNLVKRYGKVTALDHCDFDLMPGEILAVIGDNGAGKSTLIKALSGAVIPDEGTVELEGKPVN
FHSPIDARESGIETVYQTLAMSPALSIADNMFMGRELRKPGWRGQLLRQLDRSRMEEIARQKLNDLGLMT
IQNINQAVETLSGGQRQGVAVARAAAFGSKVIILDEPTAALGVKESRRVLELIQDVKSRGIPIILISHNM
PHVFEVADRIHVHRLGRRLCVIDPKEHEMADAVAYMTGAKEPDAELSAA
>gi|99080212|ref|YP_612366.1| putative fructose transport system kinase [Ruegeria sp. TM1040]
MTLAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPR
GLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW
RDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQA
>gi|99080213|ref|YP_612367.1| hypothetical protein TM1040_0372 [Ruegeria sp. TM1040]
MKRSEVNEILDRSWSFIKSHGVHLPPFAHWTPDQMRTPEAADIRSRGLGWDITDYGQGRFDELGLFLFTA
RNGSHEDLSAGRGMLYAEKIMISRAEQLSPMHRHNIKAEDIINRGGGTLVIELFAPDRDGGIDRAAPVTV
PCDGIARTLPAGGKLKLAPGESVTLMPGIWHAFWSEGGDCLIGEVSTVNDDRTDNVFEMEIGRFSQIDED
TAPTHLLVSDY
>gi|99080214|ref|YP_612368.1| NAD-dependent epimerase/dehydratase [Ruegeria sp. TM1040]
MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAPALEGQDVVIH
AAITFDEEMAAADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRILHEADGFNPIPAFRPFLNQAE
RLMREPTLSTATLHPAMVYHQEGGVFDRMLADIAAERPIELWGNASIRWPLIHRKDLAVAYRLLAEDPDL
TGHFNAVAQCGVEIGAIAATLARAHGHDETLNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQ
YQDLEQCFPPL
>gi|99080215|ref|YP_612369.1| glutathione-dependent formaldehyde-activating, GFA [Ruegeria sp. TM1040]
MTQDYTGSCLCGAIAFELTGDIAAFFLCYCSRCRKGTGSAHAANLFAPDALIYWTRGAEHLRQYQHNNSR
HCRSFCPTCASPMPQVQPDCIVIPAGCLDQVPEVPISAGICWSDRAKWVDGIAAADKTDGLPQNHSRR
>gi|99080216|ref|YP_612370.1| 2-keto-3-deoxy-phosphogluconate aldolase [Ruegeria sp. TM1040]
MTLTPQQSSAKAREICALAPIVPVLVVHDVAHARPLAEALVAGGLPALEVTLRTPAALDVIREMSKVEGG
VVGAGTLVTPADVTAAVEAGAKFGVSPGSTPLLLDAALAADLPMLPGAATASEAMTLLERGYDMLKFFPA
EASGGAPALKAIGAPLPQISFCPTGGVSPSNAESYLGLSNVVCAGGSWVAPAKLVEAGDWKAIEDLAREA
STLAR
>gi|99080217|ref|YP_612371.1| phosphogluconate dehydratase [Ruegeria sp. TM1040]
MSLNATLAAVTDRIIERSRPTREAYLARMRAAASKGPARAHLSCSGQAHAYAATGPDQETLATGTGGHLG
IVTAYNDMLSAHQPFETYPMLIREAVREAGGTAQVAGGVPAMCDGITQGEAGMELSLFSRDSIAMSVGIA
LSHNVFDATVFLGVCDKIVPGLVIGAQAFGHLPAVFLPAGPMTSGLSNDEKAQIRQKFAKGEIGRDELLK
AEMAAYHGPGTCTFYGTANTNQMLMEFMGLHLPGSSFVNPGTELRDALTREGAKRALSLSALGNHYTPTC
DILDEKAFVNGMVGLMATGGSTNLLIHLIAMARAGGIILDWQDFSEISDVVPLLARVYPNGLADVNHFHA
AGGLGYMIGELLENGYLHPDTKTVTGEGLGAYLMEPFLDGGALTWRKGTTESLNDKIVRPASDPFQKTGG
LARLTGNLGTGVMKISAVAEEHRVVEAPVRVFHDQDEAKAAFKAGELDEGDVVIVVRFQGPKANGMPELH
SMTPFLSIMQGRGQKVALVTDGRMSGASGKVPSAIHVVPEALDGGAIAKLQDGDIVRVDAISGNLEVLTE
GVLDRPAATADLTSYQHGTGRELFALFRSSVTSADTGATVFGV
>gi|99080218|ref|YP_612372.1| glucose-6-phosphate 1-dehydrogenase [Ruegeria sp. TM1040]
MVSRVIPVDSFDFVLFGATGDLARRKILPSLFHRFQIGQFDDNSRIIGASRSKMDQGEFQTLVGDALKEF
GDIPADAEPDVERFLSLLDYASVDAKGDGGWSDLGSKLRDGVVRAFYLSVAPSLFGDIAGRLKSTGIADD
QSRIVVEKPFGHDLASAQALNAALREHFEESQIYRIDHYLGKETVQNLMALRFANSLFEPQWNSHHIDHV
QITVSESISVAGRGEYYDKSGAMRDMVQNHLMQLLCLTAMEPPSTFEPNAVRNEKLKVIESLVPVAADDI
VRGQYRAKSGNDSYLDHAGDPQSRTESFVAMKVEVANWRWAGTPFYLRTGKCLRERVSEIAVYFRKPPHN
IFGEDNAIDGNMLVIRLQPDEGITLKTTIKDPGPGGMRLTSADLDMTFADSLPEAGRPQDAYERLIMDVI
RGNQTLFMRGDEVEAAWTWADPIINAWDTSTRAPQPYDQGGSGPEDALLLLHRDGRRWRSIGA
>gi|99080219|ref|YP_612373.1| glucose-6-phosphate isomerase [Ruegeria sp. TM1040]
MSDIWQQLSAHRAATEATPLTDYFAQDADRFARYSASAGEMLLDYSKTALDDTARDLLVQLAESVDLKSR
IAAMMSGAKINSTENRAVLHTALRAPKDAVIEVDGENVVPGIQKVLAQMGAFATALREGSYQTKTGTAFT
DVVNIGIGGSDLGPVMATLALAPYHDGPACHFVSNVDGAHIHDVLAGLNPETTLVVIASKTFTTIETMTN
AETAIQWLKGALGEDVSTHLAAVSTALDKTAAMGIPDARVFGFADWVGGRYSMWGPIGLPIMIAVGPESF
GEFLAGAAAMDQHFRDAPLMENLPALLGLIGVWHNNICGYGSRAVLPYDQRLSRLPAYLQQLDMESNGKS
VALDGSPLPRASGPVVWGEPGTNGQHAFYQLLHQGTQVIPTEFLIAATGHEPELAHQHNLLKANCLAQSE
ALMLGRSWDEAREIAIARGFDGVDADRMAGHLSFPGNRPSVTLAYPKLTPFVFGQIVALYEHRVFTEGVI
WGINSFDQWGVELGKELATRLLPMVEGADASQKDASTRGLLAKLST
>gi|99080220|ref|YP_612374.1| hypothetical protein TM1040_0379 [Ruegeria sp. TM1040]
MGLDILCLVCLRLGNLPRRRHISAIFVLCIGFGQAHADDQNHQCTCFNMLDHIGILWRQGQHSPLTPAGL
TCSLHAKYEAVHIRRKKLRPSLGPDHRACDKLGLELASPAPLGLAQDLQASKTNPSVASLRKFGI
>gi|99080221|ref|YP_612375.1| urease accessory protein UreG [Ruegeria sp. TM1040]
MTSQTTAPHGPLRVGIGGPVGAGKTTLMAELARALKDHHSIGVITNDIYTQEDAEALMRQQILPQDRVIG
VETGGCPHTAIREDASINLAAVAEMQNRHPEVEIVLIESGGDNLSATFSPELADVTLYVIDVAAGEEIPR
KGGPAITRSDLLIINKTDLAPHVGASLEVMERDAKRMRNGLPFAFTALRHGEGVDTVLRHLFDIGGIDSG
AVT
>gi|99080222|ref|YP_612376.1| urease accessory protein UreF [Ruegeria sp. TM1040]
MTSEATLKLMQWLSPAYPVGAFAYSHGLEGAVSEGHVRDGDTLSDWLSDLLTHGGARSDALLLACAYRTE
TAESLAEIDDTARAFCPSAERLQETDLQGAAFCRTTAAIWDTALPSLTYPVAVGHAARLNDVALDLTLNM
YLHAFLSNLVAAGQRLLSLGQTEAQQRLNACGPQLRRTVDAALSGTIDDLFGASFAADIASMRHETQYSR
IFRS
>gi|99080223|ref|YP_612377.1| UreE urease accessory-like [Ruegeria sp. TM1040]
MSAPRLIARHYHGHPHDESPRDCVVLDYDARFLRRKVLTCESGERLLVDLSHTTSLDHDGVLLLEGGGEI
RVVAAPEPLLEVTADHLPRMAWHIGNRHTPCQIEASRLLIQRDHVIRAMLEQLGAQLREVEEPFTPEGGA
YGHGRTHAHEHGHTNHHGQHHDHADHGHSHDHSHDQ
>gi|99080224|ref|YP_612378.1| hypothetical protein TM1040_0383 [Ruegeria sp. TM1040]
MAYASNAQTSTPFNPFGLIAGFFRAIGNGLVHLAESNHRVNRARTLMELSDEELAQRGLKREDVVKHVFS
DIMYV
>gi|99080225|ref|YP_612379.1| hypothetical protein TM1040_0384 [Ruegeria sp. TM1040]
MSRLSAVLLAAILPLPLWAQACPTASDLTEGGIIFEFEEGDSETFRELRPGLIESVYAHDAEASGATRVL
LAKGLYVLEIIELERGELRPNTRLTYAFPVAADALLLPETETNGLAEWSYKVAYNDVGYIDQETQTFTPQ
PKFEKSYGDCTYDVLPVHVHYSETPLTDRDVLHYLPALGISYLAGNITAEGEETYEYQSIRSVK
>gi|99080226|ref|YP_612380.1| urease subunit alpha [Ruegeria sp. TM1040]
MPANIPRSDYAAMYGPTTGDRVRLADTDLIIEVERDLTGPYGEEVKFGGGKVIRDGMGQAQTTRAGGAVD
TVITNALILDWTGIYKADVGLKDGRIHAIGKAGNPDTQPNVTIIVGPGTEVIAGEGRILTAGGFDSHIHY
ICPQQIEDALHSGLTTMLGGGTGPAHGTLATTCTPGAWHLGRMMQAADAFPMNLAFAGKGNASLPAAIEE
QVNAGACALKLHEDWGTTPAAIDCCLGVADAMDVQVMIHTDTLNESGFVEHTVKAMKGRTIHAFHTEGAG
GGHAPDIIKICGEEFVLPSSTNPTRPFTVNTIEEHLDMLMVCHHLDKSIPEDVAFAESRIRRETIAAEDI
LHDMGAFSIIASDSQAMGRVGEVIIRTWQTADKMKKQRGRLSEETGENDNFRVRRYVAKYTINPAIAHGI
AHEIGSIEVGKRADLVLWNPAFFGVKPEMVLMGGTIACAQMGDPNASIPTPQPVYSRPMWGAYGRSVEHS
AVTFVSEAAQAAGIGKTLGLAKQTLAVKGTRGIGKSALKLNTATPEIEVHPETYEVRANGELLTCQPAEE
LPLAQRYFLF
>gi|99080227|ref|YP_612381.1| urease, beta subunit [Ruegeria sp. TM1040]
MIPGELMPAAGDLTLNEGAEALTLMVANTGDRPVQVGSHYHFAEANPALDFDREAARGLRLDIAAGTAVR
FEPGQRREVPLIPIGGARRIFGFNAEIMGDL
>gi|99080228|ref|YP_612382.1| urease, gamma subunit [Ruegeria sp. TM1040]
MNLTPREKDKLLVAMAAEVARKRLARGVKLNHPEAIALITDAVVEGARDGRSVAEMMQAGAEVITRDQCM
SGVAEMIHEVQVEATFPDGTKLVTVHNPIR
>gi|99080229|ref|YP_612383.1| urease accessory protein UreD [Ruegeria sp. TM1040]
MPQAADIATAPQRPSAPGDVVAAGQPPRARGRAHVSSKRRDDGAVALDTLHQSGALKLLFPTGRPDLEAV
TVNTAGGITGGDDFALTAKAGAQSQLTLTTQAAERVYRAQPHQTGQMTTRLSVEPQARLRWVPQETILFQ
HSAFRRSLHVELADDAELLLVEPLVFGRVAMGEHLSALRFHDQIQIRRAGRILFRDAIRLDGDAMAQLKR
PGIAGVLSGPCTAMVTLVLASPGAEAALAWLRTQLPAGKEAYGGASLLAPNLLHMRLLARDSFVLRQSLL
PILDKLTEGSLPRCWRL
>gi|99080230|ref|YP_612384.1| L-carnitine dehydratase/bile acid-inducible protein F [Ruegeria sp. TM1040]
MTPLHGLKVVELARILAGPWIGQALADLGAEVVKVESPEGDDTRRWGPPFVEREGDKTAAYYYAANRGKT
CVTADFRTSEGQAQVRDLVRDADILIENFKVGGLKKYGLDFESLSALNPRLIYCSVTGFGQDGPYATRAG
YDFLLQGMSGLMSITGAADGEPQKVGVAITDVVTGLYGSIGILAAVEQRHRTGRGQHIDMSLLDCATAML
ANQNMNYLVTGESPTRMGNEHPNIAPYQVMAVRDGHVILAVGNDGQFTRLCDVLNLAGLKDDPRFSTNQL
RVAHRADLTPLLAAALAQWSQSDLLAALEAATVPAGPINTIGQAFEDAQIKHRQMQIAPEGVPGVRGPWV
FSDADLALDRSAPVLPRDTKPEKD
>gi|99080231|ref|YP_612385.1| hypothetical protein TM1040_0390 [Ruegeria sp. TM1040]
MRTAFSQNLRFLCAETPSIAQTCRDIGLNRQQFNRYLSGAGLPSAHNLRRIARHFDVPEADLFTNPDQFA
AARRPKRSPQLPAPLFHLGTGFADQARILRRFLGSYHGYFTTPTWPGQVLRTLIHLRDVDGYVTSHTFER
ARSLDGSIHQRSSYRGLVAERGGRLCLLERPRNAVGALSETILMPEHPHQISYLQGLVLGVSAGANRRPF
STRTVWVRIEEKTSARAALAATGTLAKDSPRLDPKVRRLLGDDSPLSIVSDLLAPS
>gi|99080232|ref|YP_612386.1| peptidase S15 [Ruegeria sp. TM1040]
MTQPSAITVTEHLWIPLPDGRRLAARMWMPEGKGPFPVILEYLPYRKRDGTAPRDATTHPVFAAEGYACL
RVDIAGSGDSDGRFDDEYSEQELSDGEAVLEWIAAQPWSSGNVGMIGISWGGFNGLQMAYRRPEALKAVV
SVASTVDRYADDIHYMGGCLLSDNKNWASQMFAYMTRPLDPKLRPDWREEWLGRINDLPFMAADWLKHPT
RDTFWKHGSVSEDWSAIKAPVLAITGWADAYVNAPSALAAKMTGAPAKALMGPWEHRYAHISQIEAADFH
GEVLRWFDHYLKGEDAGADALPDYRVFLQEFTEPSPKNLPQNGRWVAEAHWPSPNVSDVTWPLARAGFAA
APQAGTVVVKSAATVGQAGGYFCPGIRIDNERPGDQSVDDAASTCFDSTPLLAPMEILGRPRVRLAFSVD
KPVAQVVARLCDVAPSGQSQRITYRPRNLCHDDSHEVATKLEPGKRYEVEFELNECAHRVLAGHRLRLAL
STSYWPIVWPAPEAAEIMLHLEDCALVLPERRVEVEIDAQAPGAARDYPRYQAQVLEKPWGEATTRIEAD
GTHVLESYDSYGAARDLSHGQQVSSNVRMRYAIHPDDPASARFDCAWVFAFGRETDGDAPDWNLRIETDS
AMWCDTETFTLWREIKAFEGEDLILTRDWKEVIPRGCH
>gi|99080233|ref|YP_612387.1| hypothetical protein TM1040_0392 [Ruegeria sp. TM1040]
MRNSIFAALALSLVGSLAQASSLFLEAGNWAAVYKGDTCHVYTLSSARDTSGYLEFTFQNNGFNATFDYI
YTPYTPDEIDAPWDESMDSVSLYIGDQPVWYGEEMFFYTGPGFTYGASLTPGFISELTAEMIANGERFDF
AVDRAVDGETWLYGGFSLEGFDQALAKAGKMCQFDPRALPQS
>gi|99080234|ref|YP_612388.1| hypothetical protein TM1040_0393 [Ruegeria sp. TM1040]
MKLARAIHFDESDMNVFASPARTGEWCISGGFEFSNWSEGDLVGKQRQAFANGWMGLETAGRVTFVAVTQ
IEPEEVTKLVEQLAQHFMEIYGAPDLASARPVAEAEIDHMAELCEDHDPNTLLTVARELTEAGVRESFRV
IEAQSAGLEQFAIHVTED
>gi|99080235|ref|YP_612389.1| hypothetical protein TM1040_0394 [Ruegeria sp. TM1040]
MSETITFPPLMTGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVC
GVGFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETP
DETALYAEGCADVAAPRLLESWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTEAGRSGTFLGVDE
DFGMLLRDETTTHLIPLTTVLVQD
>gi|99080236|ref|YP_612390.1| Mrp/NBP35 family protein [Ruegeria sp. TM1040]
MSITRDAVLDALKTLNDPVSGSDIVAAGIVRALTLEGSTVRFVLEIDPAKSDAYAPVRDQAEAVVSALAG
VEKVSALMTAHSTKAPPDLKPNKPAEPQGPQKIPGIAKIIAVASGKGGVGKSTVSANLACALAQAGRRVG
LLDADVYGPSQPRMLGVSGRPASPDGKTILPLRNHGVTMMSIGLMTNDDQAVVWRGPMLMGALQQMMMQV
QWGALDVLIVDLPPGTGDVQMTLAQKAQVDGAIVVSTPQDVALIDARKGIDMFHKLNVPILGLIENMSTH
ICSNCGHEEHIFGHGGVAAEAEKLNVPLLAEVPLHLDVRLAADGGAPIVVSKPDSAQARAFQDIAAALLE
RGAA
>gi|99080237|ref|YP_612391.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
MPKHPILCDCSGSQPLDSEALSAATGLPCSKVHSHLCTTESEAAAAALQDPDAIFCCGQESRFFTALAEE
LGQDAPAFLDLRDRAGWSRDALKAADVLPKMSALVSEAQLDLRPAKSVDVVSEGLCLIVGTADAALPAAE
KLQDSLGVTVLLTDAAEPPLSRGFDTIRGQLRSAQGALGGFEITVDALQSLDVTGREWSWSAPRDGGRSE
CDIILDLRGGTPLFPAPEKREGYLRADPKSPVAVADAVFAASQLVGTFEKPLYVKAEPLLCAHSRARQTG
CTRCLDACPTGAITPNGDSVAIDPMICAGCGACASLCPSGAITYDAPPTESLFLRIQTLAKAYLDAGGEA
PRLLVVDAHGAEMIRLAARFDRGLPAAVIPLEVEAFNTFGHAEILAARAAGFREVCLLPGPRADLDVQTR
ERELANAISADAARLLHAAEPEALCDALYEARTLPAAPETPQRPMGTRRQITRQAALALTAADTELPLPE
GAPYGAVVVDTDACTLCLSCVSLCPSGALGDNEDLPQLRFQEDACLQCGLCANACPEDAITFAPRLNLAP
SALDQIVLNEEEPFACIECGSLFGVKSTVERIMEKLAGNHAMFASSEAAKMIQMCDDCRVNAQFHQKDSP
FASKERPRVRTTEDYLSTRRDH
>gi|99080238|ref|YP_612392.1| hypothetical protein TM1040_0397 [Ruegeria sp. TM1040]
MLNLGALCAFACRPFCGKLGETSQGTSVNQANAKTVVMPLGVVIRRTPGVTPWAKWSWRAVAVLPGAAEA
DWSLLREEGEASEFHAATLPLELHRADAEAYMQGLTANPPSIYVVMRPGADARPEVALVTASPFEAQDYA
DTGEDQVEKVDMPVGLVAWVRDFTLAHFKEEEFKKRRRDRQRVDLEEEGVGDARIPQLSDVYRAPVKARK
ERLQ
>gi|99080239|ref|YP_612393.1| hypothetical protein TM1040_0398 [Ruegeria sp. TM1040]
MSAQDFWSRRRAAVEAEAAQGERALKEAEAAERDAEAAERSDEELLAELDLPDPDTLGPGDDFKAFLSEA
VPARLKTRALRRLWMTNPVLANLDGLLDYGEDFTDAAMAVENIQTAYQVGKGMTAHVEELARQAELEAAA
ARATEEQPVEDAPDVDQDEADFDAPAETNEPPATAPKDATPSVTAHASAAGGDHEEEAVAPVTSRRMRFV
FEDGAAST
>gi|99080240|ref|YP_612394.1| cytoplasmic chaperone TorD [Ruegeria sp. TM1040]
MTQESPMTEAAVTAETVTEEDRLRADLYNYLGLMLAAPPAEMLLEQTAGLSGDDTPLGEAITQLARVAKR
TKPAAAEREFNALFIGLGRGELLPYASYYLTGFLNEKPLAALRNDMSARGLSRAPNVFEPEDNIASLMEM
MGAMIVGRFNTPVSLAEQKTFFNKHIGPWAAHFFADLEGAKNSVLYASVGAVGRAFMEIEAEGFRMGG
>gi|99080241|ref|YP_612395.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MSRKEDGASRRDFLKLAATTTPAAVVALATTGGEAEAATPDLSSSKMQDTAHTRAYYDSTRF
>gi|99080242|ref|YP_612396.1| formate dehydrogenase alpha subunit [Ruegeria sp. TM1040]
MLRKKTNGVARRPQRTSILSKVGESAVDRRAFLRGSGLAIGGLAAISATGGTVTQANAAASATGAMETIK
SVCTHCSVGCTVVAEVQNGVWVGQEPGWDSPFNLGAHCAKGASVREHAHGERRLKYPMKKEGGEWKRISW
EQAIDEIGDGMMQIREESGPDSVYWLGSAKHNNEQAYLFRKFAAYWGTNNVDHQARICHSTTVAGVANTW
GYGAMTNSYNDIHKSKAIFIIGGNPAEAHPVSLLHVLKAKEENNAPLIVCDPRFTRTAAHADEYVRFRPG
TDVALVWGILWHIFENGWEDTEFIRTRVWGMDQIRTEVAKWTPEEVERVTGTPGSQLKRVARTLVNNRPG
TVIWCMGGTQHTNGNNNTRAYCILQLALGNMGVSGGGTNIFRGHDNVQGATDLGVLSHTLPGYYGLSAGA
WGHWGRVWGEDMDWLKGQFETVKGADGKDKNLMNLTGIPVSRWIDGILEDKENMDQPNNVRAMVLWGHAP
NSQTRMTEMKTAMEKLDMLVVVDPYPTVSAVLHDRTDGVYLLPACTQFETRGSVTASNRSLQWRDQVVEP
LFESLPDHVIMAKFANKFGWADRLFRNIEMEDAETPNIESITREFNAGMWTVGYTGQSPERIKLHMANQH
TFDRTTLQAVGGPADGDYYGMPWPCWGTPEMKHPGTPNLYDMSKPVAEGGLCFRARFGVERDGENLLAEG
VSNPGAEIQDGYPEFTMQMLMDLGWDGDLTAEERAAIDAVAGPKTNWKTDLSGGIQRVAIKHGCAPFGNA
KARAVVWTFPDPVPLHREPLYTNRRDLVADYPTYEDRKFYRLPTMYASIQKNDVSKEYPIILTSGRLVEY
EGGGDETRSNPWLAELQQDMFVEINPRDANDIGIRDGSQVWVEGPEGGKVKVMAMVTERVGAGVAFMPFH
FGGHFQGKDLRDKYPDGADPYVLGESTNTAQTYGYDSVTQMQETKATLCKISAA
>gi|99080243|ref|YP_612397.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
MSRAKFLCDAERCIECNACVTACKNEHEVPWGINRRRVVTINDGKPGERSISVACMHCSDAPCMAVCPVD
CFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQFPQAGNFGSRGKMDKCTFCAGGPEENNSQAEFQKYGR
NRIAEGKLPICAEMCSTKALLAGDGDTVSSIYRERVVARGFGSGAWGWGTAYDQKGG
>gi|99080244|ref|YP_612398.1| formate dehydrogenase gamma subunit [Ruegeria sp. TM1040]
MPRLIFVFVLKLALLCGLSVNAQEASPAAPDRSATGGAQTLEDILARQRGEDLDDSFRSEATGNPELAAG
IEQQLGTLGGQSDPELWRALRYNSADISVSAGGDVATVLVQDGGMSWLSFREGPLRQYGGWLLLGTIAAL
AVFFVLRGRIGIDADKTGRTVTRFAFVERMAHWTLAGSFILLGITGLLTLFGRVAILPYLGKDVNSVLLI
GSKWIHNSVSWAFMLALIVVFFMWVAHNIPNKLDLVWLKQFGGIIGSKHPPAKKFNAGQKVIFWSVILLG
ASISVSGLSLLFPFEMPLFAKTFAALNSTGIPELLGFGVLPTELTPHGEMQLAQLWHAIVGFVLMAIIIA
HIYIGSVGMEGAYDAMGSGEVDEAWAHQHHSIWLEEVKEKERAKGSDASATPAE
>gi|99080245|ref|YP_612399.1| cytochrome c, class I [Ruegeria sp. TM1040]
MLRRLALGLLLCAASGVSAEEFQTLKGHGGPIMALAVNDRGHVASASFDNSVSLWQEGAPSWLEAHEAAA
TVVAFGPDDTLFSAGDDFVIYRWQQGHPQEIGRHTAKIRALDLSRDGEWLASASWDGGIGLWPMSAGTPR
RIAVGTGVNDLAFDGAGRLFVATMTGQIQVFDSPEAAPRILAEQGFGINRLVLSAAGWLAYGAVDGGTRV
INAETGAEIADFTLDRRPILALAHHAESQQIAVGDGHGYIMMIDTHDWSIARDFRAMREGPVWALAFSKD
GQRVWAGGIHDVIYGWPIALMASSPAAGTETRTFLQAPETMPNGERQFMRKCSVCHDLVATEQRRAGPHL
AGLFGRPAGSLPGYRYSDTLAQSDIIWGAETIDALFDLGPDHYIPGSKMPMQRITAPTDRQDLIDYLKTA
TQLSEDN
>gi|99080246|ref|YP_612400.1| two component, sigma54 specific, Fis family transcriptional regulator [Ruegeria sp. TM1040]
MNVSSVIRDEYSESLSSASILVIDDEPGMRHFMTKILEPRCKRVEQAASAAEASDILDKAHFDLIVLDNI
MPGKTGLDWVAEQRRVGLFADTILVTAYADLDTAIQALRIGIADFVLKPFRANQILNAVARALDRKYLRR
ENYLLKHELSAEKSSARGRLLGKSAAIEKVRKMLQRLAPLPTPVLFTGASGTGKEIAARTLHSLSDRAEQ
PFVAINCASLSPDRLAEELFGVVDAQDRRRDGLFLHADGGTLFLDEVAQMPEQVQAALLRVLEDQKVRPV
GAERDIPLNLRFLLATNADLLQAVEEGKFRADLYHRINVVNIEMPALKERIEDIVELAALFMDQFALSLG
MPALELDEETLLKFSRYAWPGNVRELRNLIERSVILGAFPEEFSGTGSVIGAAAVENLDMVMQRHIMHVL
DACDGNRAEAARRLGVSRKTVDRKCASWGL
>gi|99080247|ref|YP_612401.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MLKSVRLRLLILALLPLIVLMPLLMVVAMARWNADYDKILIEKVESDLRIAEQYLGHLQSNSARALQGLA
QSAEIADVLTRDPGLTPAFLEQSQDRLGLDFLYLLQGDELTDAKEKWPVIFQAAAGRMVSEIDILSASDL
AALSPALAAEARIELIETEAAAPADHTVEDRGMVVHTAAPVRVNGEIRVLVGGILLNRNLDFIDTLNELV
YLQGQYSDGRQGTATLFLSDTRVSTNVRLFEDVRALGTRVSAAVRDAVLGKGRTWLDSAFVVNDWYISGY
LPISDSFGKRVGMLYVGFLEAPYETAKRAAYWTVVGAFVLVIALTAPLFLWLAKGIFAPLEQMTRTMARV
ERGDLTARNQTSARGDEIGQVANHLNTLLDQVQERDRRLRNWAGELNLRVEERTRELQVANAKLEETFRQ
LVMSEKLASIGEITAGVAHEINNPVAVIQGNVDVMRMTLGDAAEPVRTELDLIDNQVMRIGAIVGKLLQF
ARPSEFGTFAEHVDVAAVVRDCLVLVDHVISKQEVRVLTQFDAAPHVRIDPGELQQVVINIIINASQAME
GKGTLAISVAGEVRDAQTGVALRIADTGPGIPMERIDHIFDPFFTTKQGEGTGLGLSISQTLIQRAGGRI
TVRNRRARGAEFLIWLPEPTDADDPDQR
>gi|99080248|ref|YP_612402.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MTDPRTVVIFGASGGIGRALVETYAGMSAVETVHAVSRGGDISFEGSPAGQEKIAQHQADITSDSDLEAL
ATRIGAAEMVIVATGILTDQETGLSPEKSYRHQDKAAFEQVFGINTIGPALVAKHFLGRMPRKGRTVFAA
LAARVGSISDNGLGGWHAYRASKAALCMLMRNYAIEVARKNEDAICVCLHPGTVDTGLSAPFQGNVPEGK
LFTPEYSAKCLASVLSQLTPKDSGKQFDWAGAEVPA
>gi|99080249|ref|YP_612403.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MSFKNQTWWIIGASEGLGRALAEALDQEGASLILSARNADRLQALSDGLGDAQALPMDVTDSRSVASAAE
AASDADGVIYCAGLYDPMTVQEWEPETAEAICEVNFMGAMRAMGRVAPRFARRGHGHIVLIGSLAGFTGL
PGAIGYGASKAAVMHLGENLHRDLRDSGVKVQVVNPGFIKTRLTAKNDFKMPMIQTPEDAAACCIKAMRS
NRFQTSFPAPFSWVFRIAALLPRKLVTRLI
>gi|99080250|ref|YP_612404.1| hypothetical protein TM1040_0409 [Ruegeria sp. TM1040]
MKLLLGITVLVLLLLLWRPGFGFRAQRPSDYTGTGPAFDIRTHLNGRFISEGMIYGPTGRVVSRFVAEMN
GTWDGTRGTLSEDFSYAGGGTQARQWNLEIHENGSFTATAEDIIGTGTGQHEGATVRLQYRIRLPKDAGG
HVLDVTDWMYLMENGTIMNRSEMRKFGIKVAELVATIRPAPDTDAPEQS
>gi|99080251|ref|YP_612405.1| sodium:galactoside symporter family protein [Ruegeria sp. TM1040]
MNWRVSTYALMLAAAGLPLYIHLPRYATGELGMSLATLGVILAGIRVMDFAQDPAIGWLVDRYPRQKPAF
ATLAALGMALGFVMLYTLRPETGSTVWFTAALAVVFTAYSLGTILFYGQSAALAAQGNGLISLAGYREAG
TLAGIIIAASAPAALVALGASGSGYGAFGILLAAICLVALWSSRPLWRVPSASDAPLTLSDLRSSGALGL
LALAFVNALPVAITSTLFLFFVEDRLLLPEFAGPFLILFFLAAGLSVPVWTRTAARYGATRSLIFAMCLA
ILAFVGAALLPAGAAFGFALICIGSGAALGADMVILPALFAGALDRAGLQAGRAFGLWSFAAKLALASAA
ALLLPLLEVSGYRPGETNSAAALTALTLAYAVLPCVIKCAAIVLALQLPREEVHA
>gi|99080252|ref|YP_612406.1| hypothetical protein TM1040_0411 [Ruegeria sp. TM1040]
MRPKTGLTALCCWFAGVALFTAVTLATPLAANPVSTGLRAPVELGKATLRFLGFEIYTATLHIEGARRFD
WNQPLSLRIDYARGFSDAELLEGTEKELQRIEGARSDQPQMLQKLASCFRDVNSGDSYVAVSPAANVIDM
RLNGQRTCRISHPDLRKRFLGIWLSPNSRSARLSAQLRGE
>gi|99080253|ref|YP_612407.1| cyclopropane-fatty-acyl-phospholipid synthase [Ruegeria sp. TM1040]
MLFITNRVKRDFLDSCASIRRGSLRLITPEGEVYEFGQGEPAAEMQINDWSVVTALASRGDIGLGETYVA
GLWDTPSIEAVTQVALLNLDYLEGFAYPSRLATLKFRIVDRILRANSRSGASRNIKAHYDVGNEFYQLWL
DESMTYSSALFAPGDATLEDAQHRKYDRILNRTGEAERILEVGCGWGGFAERAADHGRHVTGITISPSQH
GFADARLDGRADIQLCDYRDTSGKFDGIVSIEMIEAVGERYWPQYFAMLKDRLAEGGRAVVQAITVPDAY
FDIYRKGSDYIRQYTFPGGMLLSDAMIAHHARNAGLQVTDNFGFGQDYARTCRMWSERLSAASDKVLGLG
YDQSFLRNWQFYLQICAASFETRQTDVVQVELAHAT
>gi|99080254|ref|YP_612408.1| hypothetical protein TM1040_0413 [Ruegeria sp. TM1040]
MSASAPISPLVKGPLHLAGTTTHARRGAIQNAFRYGVDYVLIDPQSTRGPLLFSRNRWNLASVMDRNHGG
APKKGRGLDWAKEVFEHAGLAPQNLRILLLTQPSFLGYIFNPVSFWLAYDGATLRGVIAEVSNTFGDRHS
YLCAEPEFAPITAKSCLSAQKIFHVSPFQEVAGDYRFTFDITGTRIAIRIAHKNGSEGVIATLMGELHDL
NNARLIKASLRRPFGAMRTVALIYWQALKLKLKGARYRRRPLPPEQEVS
>gi|99080255|ref|YP_612409.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEAGLHGTQPVDT
GFIVFNYVNYPHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDALFGQRRNLARPAFFGMVRDIL
RFNARAEEFARDDSTTIGELVKELSLGDWFQRYYLMPICGAIWSTPPEEISAFPARSLVRFFRNHALLSA
TGQHQWWTVKGGSREYVRRLTRHLQNTGVDLRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDD
ALRLLAAPTPQEQATLGVMRYQDNHMILHRDASQMPKRRACWSSWVYKADLRDDRPAIGVTYWMNRLQNL
PENDPLFVSLNPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGENHTWFAGAYLRHGFHEDGFAS
AVRVARAIDARTMGSRSAQDLVA
>gi|99080256|ref|YP_612410.1| RNA polymerase sigma factor RpoE [Ruegeria sp. TM1040]
MGEGTSGCRESDRVTGEAYSETTVWMLAVRDDRDKAAFGRLFDHFAPRLKGVICRSGVSPAQAEDIVQDV
MLTVWRKSHMFDPGRAQVSAWIYQIARNRQIDILRKEKRPVPEELKPVEDTEDDASQVVALEQETQALRA
ALQTLKPAQREMVERAYLGELTHAEIKAETGLPLGTIKSRIRLGLEKLRHELKGTQRS
>gi|99080257|ref|YP_612411.1| anti-ECFsigma factor, ChrR [Ruegeria sp. TM1040]
MTGITHHIPDELLIAYAAGSLTKAFSLVVAAHVSMCDECRARLGAHEALGGALLDDMPVAEVSADMKGRL
FDALDDPVAREKRYDRAGIFPAPVMEALGGLPPKWKPLGLGVRQMILDHDRSGSVRLLYIPAGQGVPDHG
HNGLELTLVLQGAFYDETGHFGVGDLEVADGDLEHEPVAADGPACICLAATDASLRFRSFVPRLLQPIFR
I
>gi|99080258|ref|YP_612412.1| glyceraldehyde-3-phosphate dehydrogenase [Ruegeria sp. TM1040]
MTLKIAINGFGRIGRNVLRALLENDTTDVEVVAINDLAPPATQVHLLKFDSVHGRLDAEVTVEGDTMKVG
RHEIRLTAIRNPEELPWSDVDIAYECTGLFTTRDKAAAHLKNGSKRVLISAPGTEVDRTVVFGVNDRDLT
AEDIVVSNASCTTNCLAPVAKVLDDAFGIKTGYMTTIHAYTGDQPTHDTTHKDLYRARAAALSMIPTSTG
AARAISLVLPHLKGRLEGSAIRVPTPNVSVVDLTFQPERVASVEEINAAIAAAAKEGPLQGILGYEEAPL
VSIDFNHDKRSSIFAAPQTAVTSEGLVRVVSWYDNEWGFSNRMIDTGRAMGKFL
>gi|99080259|ref|YP_612413.1| alpha amylase, catalytic region [Ruegeria sp. TM1040]
MATSFAARLSQLLTQIYPDLDTEILGSKVVEAFWPEGSHRRKRPRRPGNSLWSERDALLITYGNTMRDGA
HKPLDLLHDFLLTYMKGVVNGVHILPFFPFTSDDGFAVTDYRKVNPELGDWADIRRIGGAFHLMSDMVLN
HVSSQSAWFNAYRQGQPPYDRFFYEASPSDDLSAVVRPRTTPLLQEVETATGAKHVWCTFSHDQVDLNFE
NPEVLLEILRIIRLHIDQGVRIIRLDAVAFIWKEVGTSSIHLPQTHAIVQLLRLLADYATETVVLLTETN
VPRAENLSYFGNRNEAHVVYNFPLPPLILHAMMAGSARYLLNWARAMPPAPLGCAYLNFTASHDGIGMRP
AEGVLPQEEIDQMIACVRAVGGLVSMRALPGGGEAPYEVNCTYFDALGRTFDRGEARKVDRFICAQTIPM
SLEGIPAFYIHAMLATANDHDAVARRGMNRAINRHRWDYGELKARLNDADSAQAQVMSALSERLRVRAEQ
PAFHPNATQFTLQLDDRVFALWRQSLDRAQSIFALHNVSGDGVILHPGALNLIEGETWRDLLSGDMFESD
AEITLAPYQCRWITNQA
>gi|99080260|ref|YP_612414.1| hypothetical protein TM1040_0419 [Ruegeria sp. TM1040]
MNISKNEQRVLHVLAQGGRILYERAPNGRVTEVTCYTREGLILANCKLDVFNKLRRKRLVESKSSRPYQI
SEKGRRSVRAQLDNR
>gi|99080261|ref|YP_612415.1| glycosyltransferase involved in cell wall biogenesis [Ruegeria sp. TM1040]
MADFHQNGNIAQFHNLRSRPVEELEYELTTFAQTRKISLILPCLYSELEGPALRPILDELARVPYLHHIV
IGLDRASEAEYRHARTYFASLPQSHRVLWNDSPRMKQLGARLAAQGLAPPEPGKGKNVWSCIGYLLAQAE
SSVVAIHDCDISTYSKEMLARLVYPVAHPAFSYQLSKGFYARVGGGKLNGRVSRLLVSPLLIALKRTIGD
RDYIDYLRSFRYPLSGEMALRAPLLPDLRIPSDWGLEIGVLSEAWRNLGRKAVCQVEIADNYDHKHQSLS
PEDASAGLNRMSTDICKAIFRKLAADGTVFTPNVFRTLKATYYRSALDLLEAYAHDAMMNGLALDRHGEE
KMVEMFANNIMAAGQVFLENPHETPFIPNWNRIHSANPTFLQDLKAAALADEAEYSPSP
>gi|99080262|ref|YP_612416.1| mannosyl-3-phosphoglycerate phosphatase [Ruegeria sp. TM1040]
MPRLLVFSDLDGTLLDHTTYSHAAAQPALSALRSRDAVLILASSKTAVEMLPLHQELGLGDAPMIVENGS
ACQRPTEIDSDPATYNKLRRLLTRLEMPFEGFGDMSTQKVAALTGLSDEGAVRAKTRQFSEPGIWHGTPA
QKDAFLAALAREGVTARQGGRFLTLSYGATKAQQMQKIRQQHAPCFTVALGDAPNDAEMIATADIGVIVR
NDHGPDMPAIPPEHRIMHTQQEGPKGWNAAMLQILSEWDHDHKGAAAHG
>gi|99080263|ref|YP_612417.1| BCCT transporter [Ruegeria sp. TM1040]
MPVFCAKFAYGRDAAARRDWICGFATWLSASRHPPEFQSQRMPHRRVFLSDRSWRRWRQIETIAQSTCRL
LLRWQPRLRPAHSPEVAFPQQRGPTTMPLKPPLTELEIKTADSGFYKGFTKDVTITAKILVAALILWAVA
FPNQAASVLSHLNGVILASFNYWYIYVVAFFVVVSLGLAIWPASGRLRLGAEHEKPEFSAFSWFSMMFGA
GMGIGVLTYATGEPIYHFQNNPDVIQGFVEGASAETVRSAYKWSFLHWGLSPWGAYALTGLALAFFAYRR
GLPLTIRSALTPLFGDRLSGFAGHAVDVVAVIATVLGVAQTLGFGVEQFVAGLSRIGFGDWLLVTTDEGT
QKASVVAIVLSLVIIMGASTLSALSGVGKGIKWLSNINMGLSVFLLSFFLIFGSTVFGLTALVTGIYDYL
LAFPAMLFTVWSDKGTETSSALESWQGGWTIFYWAWWIAFAPFVGLFLARISRGRTIREYVFGAMLVPSV
MCFVWFALIGGTAIDLELSGIAEGAILGTGLSDQLYATLAVLLSDGLAWVFSVVVAVLLMTYLVTSADSA
VLIINTINAAGDEGPKARPHIIFWGVALALVVGALLIIGGLGAIQTAMIIGALPFSVVMALMGVALIKAI
ILDGLRGRAGLPVTADQLAGE
>gi|99080264|ref|YP_612418.1| fumarylacetoacetate (FAA) hydrolase [Ruegeria sp. TM1040]
MHSNAWPSGAKPLSLLVTKRKGPPMPAAQPDYVIAPPPQPALPIAESTALFPVRRVYCIGRNYAAHAVEM
GHDPDREPPFFFQKTPDSLDASGRFPYPVMSEDVHHEAELLVALGKGGENISEDAALDHVWGYGLALDMT
RRDLQGIAKKAGRPWEIGKSFEHAAPVAPLTPATTIGHPDAGVMTLTVNGTPRQQGDLNQMIWKIPEMIA
HLSQYYRLAAGDVILTGTPAGVGPVLRGDQLELTFDGLTPLRVLVE
>gi|99080265|ref|YP_612419.1| hypothetical protein TM1040_0424 [Ruegeria sp. TM1040]
MTVEFDAARLGPILYYRGLEGDALQLAAMVMLPIGERPETLRTDAGDHAPTLLREIGRSAVWRYDFGLTP
SCGSYRLGDQSYDVQTDLHGDMRIAFASCNGEEKGDLDRDQEERNRMWAHMCAEHRRAPFALLLQGGDQI
YADEATEGHPLSEDWPDKAGRPRNAEELKDLADHLRLRFAERYVQALFGEAPSWIMARVPTLAIWDDHDI
CDGWGSLYRSKTHSEVGQCLYAVAREMYLLFQHAAVEGDIPDLFMDETGTSLSWQRALPGVKLLAPDLRA
ERGRRQVLGAYGWSAVEAMKPGSEHTFVISSVPLLGPRLSLVEGLMLMIPTMQKYEDDLRDQWQSRAHRK
EWIRMLKQVIAWREEAPVTILSGEIHLATRAEMGPDETRVHQLVASGIAHRAPPQSYARSLGTLAGLGDA
PVSGHPIRIHPLPGQSQRYTAERNYLELRRTHGKWHAVWHLEESGDTVPMVLE
>gi|99080266|ref|YP_612420.1| hypothetical protein TM1040_0425 [Ruegeria sp. TM1040]
MSEKDQRRPSGLRGAEFLGVATALILAVLAGQGQARLPHDTGFAALQGPGATPLSRDRRVVKAPMPQMSP
LSWRCQLVCDETGHVRQSCLMLADPRLSSIGQRLDYLSKNKSALKSLGDLGLSDLTETPTC
>gi|99080267|ref|YP_612421.1| mannitol dehydrogenase-like [Ruegeria sp. TM1040]
MTSLRLSNDTLSDLPKHITRPTYDRAALTAGILHIGLGNFHRAHQSWYLHRLMQQGEAQDWAIIGAGVRD
YDAAMRARLKAQDCLTTLIALSPDTTSAEVVGSMIDYLPIEADNGALIAAMARPEIRIVSMTVTEGGYYR
DPVSGAFDDTHPDILHDIANPSTPRTVFGAIIAALALRRTAGVGPFSVQSCDNLQGNGDVTRQTVLGLAR
RSDPELASWIAAQCTFPNSMVDCIVPATGPAEIALAAEMGVADQAPVTHEPYRQWVIEDNFCAGRPDWDK
VGATFTNQVHAYETMKIRILNAGHQVIANAGELLSCETIADCMQDPDIRSMFEKVETQEIAPYVSPVPGI
TADAYVALIADRFSNPAIHDTTRRVAFDGSSRHAGFILPILRDALAARGPVDGLALVEALWARMCAGLRE
DGTEIEANDPNWPQLQQAAQAARTAPEVWLAQSEYYGDLAQETHFADRFCHWHALIWSKGTREALRSYTT
QI
>gi|99080268|ref|YP_612422.1| sorbitol dehydrogenase [Ruegeria sp. TM1040]
MRLEGKTALITGAARGIGRSFAEAYIREGARVAVADIDTERARQTALELGDQAVAIELDVTCQESIERAV
EQTVEALGCIDILVNNAAIFTAAPITEIHRDDFERVFDINVAGTLFTMQAVAKHMISRGAGGKIINMASQ
AGRRGEALVAVYCASKAAIISLTQSAGLNLIQHGINVNAIAPGVVDGEHWDGVDAFFAKYENKAPGEKKR
EVGDAVPFGRMGTADDLTGMAIFLASAEADYVVSQTYNVDGGNWMS
>gi|99080269|ref|YP_612423.1| ABC transporter related [Ruegeria sp. TM1040]
MGRITLDKVTKSFGATEVIPPLDLTIEDGEFTVFVGPSGCGKSTLLRLIAGLEDVTSGQIRIDGQDATMT
PPAKRGLAMVFQSYALYPHMSVRKNIAFPMKMAGIDDAEQTRRIDAAAKALNLTDYLDRKPGQLSGGQRQ
RVAIGRAIVREPAAFLFDEPLSNLDAALRVGMRMEISELHKKLATTMIYVTHDQVEAMTMADKIVVLRAG
HIEQVGSPLELYHSPRNLFVAGFIGSPKMNFIEGDEAAKYDAHTIGVRPEHIDIGESGGMWSGVVGVSEH
LGSDTFFHIHDTGLAETITVRADGEVGFRHGDRVSLTPRTDVMHRFDAQGLRIP
>gi|99080270|ref|YP_612424.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MARSVTQHRKAINTIAAWSVGLLIFFPILWTILTSFKTEAQAINDPPLFLAFDWTLENYAVVQERSNYLR
FLWNSIAIAGGSTLLGILIAVPAAWSMAFVPSKRTKDILLWMLSTKMLPAVGVLYPIYLIFIRLGLLDSR
TGLIVVLMLCNLPIIIWMLYTYFKEIPGEILEAARMDGATLKEEILYVLTPMAIPGIASTVLLNIILAWN
EAFWTLNLTAAKAAPLTAFIASYSSPEGLFYAKLSAASTMAIAPILILGWFSQKQLVRGLTFGAVK
>gi|99080271|ref|YP_612425.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MATQHSRSAARFMMAPAVILLLGWMLVPLTMTLLFSFKKYLPLRGGDLGWVGFDNYVRFVSSSAFWPSVQ
ATLLIVGGVLVITVIFGVLLALLLDQPMWGQGIVRILVIAPFFVMPTVSALVWKNMFMDPVNGLFAHLWK
FFGAEPIAWLSEASMQSVIIIVSWQWLPFATLILLTAIQSLDREQLEAAEMDGASPLARFGYIILPHLGR
AITVVVLIQTIFLLSIFAEIFVTTQGSFGTRTLTYLIFQRVLESQNVGLGSAGGVYAIILANIVAAFLMR
IVGKNLDA
>gi|99080272|ref|YP_612426.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MYLRNALCAASALAVMATGAVQAETTLTIATVNNGDMIRMQGLTDDFTAKHPDIQLEWVTLEENVLRQRV
TQDIATNGGQFDVMTIGMYETPIWAAQNWLVPLTDMGADYDADDILPAMRAGLSHNGTLYAAPFYGESSM
VMYRTDLMEAAGLTMPEAPTWEFIKEAAAAMTDKDAEIYGACLRGKAGWGENMAFITTVANSFGARWFDE
DWTPQLDSPEWKEAVTFYNDLLQSYGPPGASTNGFNENLALFQQGKCGMWIDATVAASFVTNPDDSTVAD
KVGFALAPDTGKGKRANWLWAWALAVPAGSDAKDEAKAFIEWATSKEYLALVAENEGWANVPPGSRTSLY
ENPEYAKVPFAQMTLDSINAADPNSPTVDPVPYVGIQYVAIPEWAGIGTSAGQEFSAMVAGQQTPDEALA
KAQALVADEMEAAGY
>gi|99080273|ref|YP_612427.1| LacI family transcription regulator [Ruegeria sp. TM1040]
MSESKIRNMEELASVSGISRPTLSKYFNNPDSVRASTRKKVEAALQEHHYQPNIYAMNQNRRLTKNIGIV
VPYLADPFFAEIARVIENLVIQGGFRPILLSSHGETRQEVENLDSLRSIRPAGVLLAPLGRRSDTAAVDR
FCTDVPTVLFDNNLDDLGQAFFGLDNPQSVGLMVKHLCKTGEPPVFFEMKTPTNPNAYKRRRAYIDTMEA
LGLDPKLVQVEGETWDFEEIGYKGGLAAIRNRELCTNTVLCSNDRLAIGFLAAAYECGLRVGCGTGCALR
VAGHDDHPYARFTCPPLTTIAQDYSAIATRSVEAILNLIESGEHPDLRNSTLFEGTLIKRASA
>gi|99080274|ref|YP_612428.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MRTLPKCACMTLKETTPVLLKPSSVSLKLKLPVLMVALTVAFVVTVSLLIYTMAERSIHEKVASAKESKA
HAGAQALRFSIDAAQRDVSNLAALPTTFRAINNFERVIGMIEVDDKIGFLKTHYIVENPNTEEERAALVD
PGDGSYYSQSHVTYHPTFVQTAELSGYSDIYLITPAGLVAYSVHKKGDFAENINDSVLADTALSRVAQAA
LAAEPGSVVVEDFSAYGPSGAVDAFLASPILNKRGDPVGVIAVRIGTDFVQSALNANLADDGYENIFLVD
PDGRTKSPGMIAGAFSLLSVLPDAPHIAAARAGEAGNFTATVTALGTPATAVVVPLDLNGFDWSVVMETD
SAQAFAVIYRIRWMVLSLIGASIVVSIGVSWAAANRVTRPIHQLRDATNALAQEDYDIAISGLSRGDEFG
DLARSLDTFRDKLKSADEAAEREEEAKRETDFVVDEMSRALAQLQDGNLVSEIEHPFSEDYETLRENYNH
SLQNLRNSLREVVEASQHVDRFSQEQRAAANEMAERTESQGSTLEKTATAMQDLSQRLRETAEKATEVDS
TMRGTRREAEQSNEVVRSAVAAMDQIQQASSEIAKFINMIDDIAFQTNLLALNAGVEAARAGEAGAGFAV
VASEVRNLARRASEAAGEIKTLTSASEEHVANGVSMVDKAGNALTSIIAQVSSVGDLVSEIAGGVQHQSQ
GLEDINTAMRELDAVTQQNTAMAEEASASSQLLQSEARTLSSVTGRFQIDPPMSTDAPASWDDGSDTPAA
SHEAAG
>gi|99080275|ref|YP_612429.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MPSSLPTQAQVVIIGGGSIGCNIAYHLTQLGMTDVVILERDKLTAGTTWHAAGEIVPAVLGAEWECELYL
HGRELIAGLEAETGLATGWREVGYIQPADTAERLEEMRRGAAFMNLHGFEIHEISPREAQERFPIGDFSN
TLAAFWYPKEGRTNPVDTTMALARGARTRGAQILEDVAVTDILTRQGRAVGVRTDHGDIAAEHVVIAAGM
WSRQIGAKAGLNLPLQAAEHYYLITEEIEGIHRDLPLLEDPHNWSYYREEVGGLLVGMFEPDAAPWMIDA
IPDNFAFGEIEPDWDRMAPHLEAAFSRVPLVAEAGVRKLFCGPESFTPDLAPLIGEAPSLRNCWVAAGMN
SLGILYGPGVGKTLAHWIVEGRCPVDHTAFNVSRFADGTHNTPAYRRARTPELLAKSFGAHFPNDSFKTA
RGLKRSPLYDRLRAAGAYFTESHGWELPDWFAPTPEAAKIDRYSWGRQNWFDWHAEEHRAAREDAIVMDM
SSMAKFLVQGRDACTLLNRISCNDIDVPIGKVVYTAWTNQAGGFEADLTVTRMDVDRFMVVVGENSHGHT
ETWMRRHIGADEFVTITDMTDGITQINLHGPKARDILAKVSAADLSQEAFPFMTAQHIDVGLFRIHALRV
TYVGELGWELHVPSLHAVQVYDLLMQAGADHGLRNAGMQTLSSLRLEKAYRDFGVDLDNTDTPIEAGLGF
AVKLDKPGGFIGRDALAKIKAAGAPKRRMLQFLLRDPEPLLHGNEIIYLDDKPVGYIQVGAYGHTLQGAV
GIGFAEIETPLTSEIATSGAWSIDIAGTKIAATASLKPLFDPAMERVRK
>gi|99080276|ref|YP_612430.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MSDNLPKKQPRTAPPEARREQLIDATITAISTYGLSGTTLAKVTAEAGLSLGLVNFHFKSKEALLTATLT
HLADEHRALWFTRSSQPDVSAADKLKLIVDAQFHAKICNRRKLSVWFAFFGESRPRKAYRELTGPLDEER
QIATSRLCADIIAEGGYSGIDSDTVSAMLESLFDGFWLNILMYPDRFTRQSAKAQVLSYLRLCFPQHFTC
LDAETFA
>gi|99080277|ref|YP_612431.1| PaaX-like [Ruegeria sp. TM1040]
MAVGLALTRASPYRICMTQHTDDWFTTAITALTEPDGLRVWSIIVSFLGDMAQDKGAGVSSAALTRVITP
LGIKPEAIRVALHRLRKDGWTESQRRGRGSFHFLTPFGRQQSALVTPRIYARSTCETDAWTLLVAGTPDG
LETLDALCDQTPLTSIRVNRHAAITPGPAMQHAAETSHMLVANLDVAHVPGWLQDDLFPEPLRQSCAALD
QALAPLGSPPDLSPLQRACLRTLLVHRWRRITLRHPDVPRIFHPADWSGESCRTRVFALLDKLPQPELAE
IEDAAPVAVQAAPQGTIAVTG
>gi|99080278|ref|YP_612432.1| bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase [Ruegeria sp. TM1040]
MCPKDVASFAAGEWIAPDHSAREIASAITGEVIARAGNATLDVQAMLDHARDTGGPALRAMTFHDRARML
KALAQHLDAHKQELYDQSFDTGATQKDHLIDVDGGIGTVFVFASKGRREMPDSTVYTDGAVEQLSRHGSF
MGQHICTSLPGVAVHINAFNFPVWGMLEKLAPTLLAGVPAIVKPATATCYVTEAAVRLMLDSGLLPEGAL
QLVSGGLGDMLDRLTCQDVVSFTGSAATALKLRQTPAIVENSVRFVAEQDSLNASILGPDAAPGSAEFDL
FLKEVQREMTTKAGQKCTAIRRIIVPDAQVNAVIDGLSAALAKITIGDPRADSTRMGALVSAAQKRDVLE
QADKIATEATRVFGDPDNFTVEGADKDKGAFVPPMLFHCADPDAARHVHDTEAFGPVSTVMGYRDLSHAS
ELANRGQGSLVASLITADPVVAREVTLNIAAFHGRVYINNATSMKESTGHGSPLPHMVHGGPGRAGGGEE
LGGVRAVKHYMQRTAVQGSPEILSAITGKWVPGGPETTGPAHPFTRRFGALTIGETLHTAPRVVTSDDVA
HFAQFTGDTFYAHMDDAAAERNPFFPGRVAHGYLLLSFAAGMFVEPNEGPVLANTGLDNLRFMKPVVPGD
SIKVRLTVKAKTPRNEEYGEVRWHVTLTNQDDELVAEYDLLTMVAF
>gi|99080279|ref|YP_612433.1| enoyl-CoA hydratase [Ruegeria sp. TM1040]
MEQSILTQDHDTWCEITLNRPDRLNAFTDEMHLALRAALEEARDSGKRALLLTGAGRGFCAGQDLSARNP
DAAGGPVDLGYTVRTFYAPLVNLIRSLEFPVVCAVNGVAAGAGANLSLAADIVLAAQSAKFIQSFAKVGL
IPDTAGSYHLPRLLGEARAKALALTGEPLSAEQAADWGLIWKCVADEALMDEARTLTAKLADGPTLGLGL
TKSLIQTSGAYTLAEQLEREADAMKTCGESADYAEGVRAFLEKRTPVFRGQ
>gi|99080280|ref|YP_612434.1| phenylacetic acid degradation protein PaaD [Ruegeria sp. TM1040]
MSLTAQQRAEKSAQAMWADDQASKWAGMGIERVDEGSAALALTVEAHHCNGHGICHGGVIFMLADSAFAF
ACNSRNQATVAQHNMISFIAPGRKGDRLLAEAREVSLTGRSGIYDVSVKNQDGQLIAEMRGCSRAIKGHL
FEE
>gi|99080281|ref|YP_612435.1| phenylacetate-CoA ligase [Ruegeria sp. TM1040]
MLDLTPNRDELDPIEIASIDEIRSLQLERLKWSLRHAYDNVAMYKARFDAAGVHPDDLQELSDLAKFPFT
TKGDLRDAYPFGMFAVPREQILRLHASSGTTGKPTVVGYTRKDIDTWADLLARSLRASGLRRGDMVHNAY
GYGLFTGGLGAHYGIERLGATVVPMSGGQTEKQVTLIEDFRPDGIMVTPSYMLNILEQYHRMGIDPRSSS
LKVGVFGAEPWTDAMRREVEAAFDMHAVDIYGLSEIMGPGVANECVETKDGPVIWEDHFLPEIIDPETGA
VLPDGELGELVFTTLTKEGLPMVRYRTRDLTRLLPGTARSMRRMAKITGRSDDMIILRGVNVFPSQIEEQ
MLTVEALAPYYQIELYSKGRMDAMRIHVEVLPAATAPEQREACTKQLAKRIKDIVGISAEISVGEPGSVE
RSQGKARRVVDNRNKG
>gi|99080282|ref|YP_612436.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MARTIAKDHDQKRAQILAASARLFAEEGYDRASMTQIARACGISKANIYHYYEGKDALLFDLLDSYLRGL
RDRVCGLELSDPDPVVRLRLILTEVLLAYEGADHEHKVQLNAMSALPEPQQEHLRAYQREMVKFMSAAIR
DAAPDTLAADKDKLRAVTMSVFGMLNWHYMWNAGADTEDRKGYADVVARLTLHGVSGL
>gi|99080283|ref|YP_612437.1| 17 kDa surface antigen [Ruegeria sp. TM1040]
MSKTSGLLATLFAASVLVAGCSDNQDINAVSGALAGAAVGNQVGSGSGKVAATLIGGAVGAQIGANAPRQ
CTYRNSAGQTYKAACPS
>gi|99080284|ref|YP_612438.1| tryptophanyl-tRNA synthetase [Ruegeria sp. TM1040]
MSETSFTPRVFSGIQPSGNLHLGNYLGALKRFVDWQSRDVESIYCMVDLHAITVWQDPADLKKATRELCA
GFIAAGLDPEKSILINQSQVPEHAQLAWIFNCVARMGWMQRMTQWKDKAGKNQQNASLGLLAYPSLMAAD
ILIYHATHVPVGEDQKQHLELTRDIATKFNHDYGVDFFPLTEPVIEGAATRVMSLRDGSKKMSKSDPSDA
SRINLTDDADTIAKKIRKAKTDPEALPSEAKGLEERPEARNLVNIYAAMADQTVDQVLADVGGKQFSEFK
PMLADLAVERMAPITTEMARLMENQDEIDKILARGSERARAITAPILRKTYDIVGMVAPVEI
>gi|99080285|ref|YP_612439.1| rhomboid-like protein [Ruegeria sp. TM1040]
MQDQNQSPFNALPPVVVALVIVIIGIEAMFSFGARGYIGGPEAVGWRLNALQEYGFGAQYFWWMWENGTW
PFDLLKRFVTYAFVHGAFTQAVFVCVFLLAMGKMVGEAMGEIAVVLIFIGSAIGGALAYALLVGGNVALF
GGFPAVYGLIGGFTHLLWLSLATVGAQQYRAFTLIAFLMGVQLLFGLIFGGSPEWVADLAGFVTGFVMSF
FLVPGGWARILQKLRQDR
>gi|99080286|ref|YP_612440.1| integral membrane protein MviN [Ruegeria sp. TM1040]
MKPIKLMSGFLTVGFWTLASRVLGFLREILIAAYIGPGLLGDAFYAAFRLPNLFRRFFAEGAFNAAFVPM
FAKRWEAGENPQGFAQDAFNLLAAAVLGLTALGMVFMPFLVWLTAGGFEGDARFDLTVGYGRIVFPYILC
MSLAALFSGVLNATGRFAAAAAAPVLLNIFACAAMIAGALRGQAVIDWLVWVVPLAGIAQLALVWIAAAR
AGVSLRPGLPRLTPEMRQLVRVALPAALAMGVTQVNLVVGQAVASAYQGAVSWLSLADRLYQLPLGVVGI
AVGIVLLPDLSRRLRAGDDEGARDAFSRAGEFSLLLTIPAAAALIAIPVPLVSVLYERGATGAEDVAAIA
MAVAIYGAGLPAFVLQKVLQPLFFAREDTRSPFHYALVAMVVNAVLAVGLQPLVGWLAPAIAAPAAGWVM
VLQLWLGSRRMGEAAQFDARFQRRCLRIVLASVAMGVVLLGAATILSDVLSLAYWRYLALLALIVVGAVA
YFTIGQIIGAFRLSEFRSALRRGKA
>gi|99080287|ref|YP_612441.1| PII uridylyl-transferase [Ruegeria sp. TM1040]
MAQDHQGAEFRAAVVALLREANKSGRSAIAEAFELQPFAARELARSYTYLTDGLVTSAQMAAVEVLHPIA
TPTTGERISVFAVGGYGRGEMAPFSDVDLLFLTPYKITAWAESVIESMLYILWDLRLKVGHSSRTIKDCI
RLGSEDFTIRTAMLEHRFLAGHGPLAAELEARLAKDLFAKDSAEFIDAKLAERDARHLKQGERYMVEPNV
KEGKGGLRDLQSLFWIAKYLYKVQDVAELVPLGLFRPEEFDFFAKAENFLWAVRAHLHLSAGRATEQLTF
DMQVQVAERMGYEDTSGRRAVEVFMQDYFRHATQVGDVTRILLSKLEDSQLKSEPLLERIFRRKPRVKPG
YRIHHNRLEIADPESFLEDKLNLLRMFEEALRTGLLLHPDSMRLVRANLHLIDDEMRNSPDAQRIFLDLL
LKHGNPERVLRRMNELGVLSTLIPEFEPIVAMMQFNMYHSYTVDEHTIQVISNFSAIERGELENELPLSS
SLIKQGVNRKVLIIAMLLHDIGKGRPQDHSILGAQIARKVAPRLGLNKSESETVEWLVRYHLLMSDTAQK
RDIADPRTVRDFAKAVQTVKRLDLLLLLTVCDIRGVGPDTWNNWKAVLLRALYSQTRDAMENGLEAFNRE
HRGTEAKKRLRTALPDWEKAAVKRETARHYPPYWQGLHVTAHVDFAEMLREIDALDDPSAMLVRLHPDED
RDATRACFVMPDHPGIFARIAGALALVGANVVDARSYTTKDGFVTDAFWIQDADGHPFEASRLPRLRSMI
EKTLRGEVIARDALKSRDKIKKRERAFRVPTHITFDNDGSDIYTIIEVDTRDRPGLLYDLARTLAASNVY
IANAVIATYGEQVVDSFYVKDMFGLKYHSASKQQSLEKKLREAIVDGAKRADT
>gi|99080288|ref|YP_612442.1| extracellular ligand-binding receptor [Ruegeria sp. TM1040]
MRFMFAVFNRARKIALTATAVVASAFVAACDPGALSGGGPTINTSKPVPVALLVPRGSAQHGDGVLAQSL
ENAARLAIADLNGVEVDLRVYDTAGNPETAAAVASQAVQDGARIILGPVYAEAANAAGIAAAKRGVNVLA
FSNNASIAGGNVFVLGSTFENSANRLTQYAKRQGKNSMVVVSGNNAAGQAGRSAIQQAAVQSGMTITGNV
SYELSQQGVINAIPTISQNVRQNKADVMFMTATTAGALPLLSQLLPEAGVTPEDVQYMGLTRWDIPAQTL
ELPGVQNGWFALPDPQKSASFRARYQSAYGAAPHPIGGLAYDGIAAIGALVSSGNSGALTGAALTQPAGF
QGTGGIFRLRPDGTSERGLAIATIQDKKVVIIDPAPRSFPGAGS
>gi|99080289|ref|YP_612443.1| hypothetical protein TM1040_0448 [Ruegeria sp. TM1040]
MNHKIVSLPPGLYFVATPIGTARDITLRALDILASADVIAAEDTRSMRKLLDIHGVPLGDRPVVAYHDHS
GTGARARLMADLAAGKSVAYASEAGMPMIADPGYDLSREAARAGHLVTAAPGASAALCALTLAGLPTDAF
FFAGFLPNASGARRKRLQEVGNIPGTLVFYESPKRVAASLADMAEVLGARDAALCRELTKKFEEVRRGPL
AELASGLADAPVKGEIVILVDRQRAATVTAADLEADLRAALRENSVKDAAAIVAEAHGEPRRKIYQQALQ
IAREDQG
>gi|99080290|ref|YP_612444.1| hypothetical protein TM1040_0449 [Ruegeria sp. TM1040]
MTQDARARGQNAHFAGAAAEEIAIRAYLARGLTLVKSRWRGPHGEIDLILRDGETVIFAEVKSSTTRDKA
AARIKPAQMQRVFNSAGAFLEGEPLGQLTPARLDVVLVWGAGEVEIIENAYGHG
>gi|99080291|ref|YP_612445.1| glutathione synthetase [Ruegeria sp. TM1040]
MKIAFQMDPIMGVDVNADSSFRLAEEAQKRGHELFYYSPDQLAYQEGRITARGHDMVVQRVEGTPATLGE
LREVDLADFDVIWLRQDPPFDMHYITSTHLLDRLKGQALVVNDPFWVRNYPEKLLVLNFPDLTPPTTIAR
DLETIKAFKAKHGDVILKPLYGNGGAGVFRLDANDRNLSSLHELFTGFSREPLIVQKFLPDVSNGDKRVI
LVDGEPVGAINRVPAAGETRSNMHVGGRPEKIGLTERDLEICAAIGPLLKEKGQVFVGIDVIGDYLTEIN
VTSPTGIQELERFNGVNIAEKVWEAIEARVA
>gi|99080292|ref|YP_612446.1| Alpha/beta hydrolase fold-3 [Ruegeria sp. TM1040]
MSLALDLLLVGLRHVVRPRLRRAHGPLEARRAFDRAAAVTFRAPPFLCRIKDRAGLDRIHCGPRLHGKII
LYFHGGGYVAGGPHTHAAMLGQLSGLSQLEVCAPAYPLAPEHPFPAAFEGAVASWEHLMAAGYAPSDVVL
GGDSAGGGLALALLSYLCHAATPPAAAFAMSPWCDLSLSGDSLQGNAERDPLLPAERIRELVGYILPEGA
DDTDPRVSPLFAEFPTCPPVLLQYSETEILFDDCRRMAERLRGFDADVLERRHPRAPHVWHLFQGWVPEA
RKSLREIADFARAAFTAR
>gi|99080293|ref|YP_612447.1| Mg chelatase-related protein [Ruegeria sp. TM1040]
MISRAQTVAFQGVEACPVEVQCAVAPGLPAFSIVGLPDKAVSEARDRVRSALAVMSIALPAKRITINLSP
ADLPKEGSHFDLPIAVALLTALEILPPEAAEETLSLGELSLDGTLVAITGALPAALTAAEQQRTLLCPKS
SSAEAAWVEAATVIGAASLSDVIRHFTGQGVLAPAQPGEVLDDPLEKDLADVKGQEGPRRALEIAAAGRH
HLLMSGPPGAGKSMLAARLPSILPPLSPGEALETSMIQSICGLIKAGGVSRARPFRAPHHTASMAAIVGG
GRRAHPGEISLAHNGVLFLDELPEFARAVLETLRQPLETGDVMVARANAHVRYPSRFMLVAAANPCRCGY
LTDPARACPRAPGCGADYMGRISGPLMDRFDLRIEVEPVAFADLERSRPGESSASVASRVAQARALQGER
YAACDGTHTNADAEGEMLEKVAELGTDSRALLLQAAEQFGLSARGYHRVLRVARTIADLDAEAQIARDHV
AEALSYRLPS
>gi|99080294|ref|YP_612448.1| hypothetical protein TM1040_0453 [Ruegeria sp. TM1040]
MTYTLYIADRMYSSWSLRGWLMLEKFSLPYDTRLVGLYNGTMAQDLAEVAPARLVPTLVLPDGTVVGETM
AMAETLAERHPEAGLWPASEASRATARWLCAEMAAGFEALRSACPMQLGHIWQGFEPSEAVLNDLSRLEK
LFAHARAVSGHARGPLFGAYSLADVFYTPVAARVIGFDLPVSTETRAYCVELLSDPAVLAWQAEARKVHY
DPEPYALDLERKPWAL
>gi|99080295|ref|YP_612449.1| phosphoglycerate mutase [Ruegeria sp. TM1040]
MITRFHMIRHGPTHAKSMVGWSDLPADLSDAAMLSRLSRALPDTAVVISSDLSRAVATADAIQGSRTRLP
HTSDLREIHFGDWELRRWSEIDAEDPDHIRAFWEKPGDVAPPNGESWNRLMQRVSRQFDRLAETYRGQDV
VVVGHFGQILCQVQRALGLTATEAFAHKIDNLSLSRIDHESTGWSAGAINQIL
>gi|99080296|ref|YP_612450.1| adenosylcobinamide kinase [Ruegeria sp. TM1040]
MLYASWSPAKLRIIRAWASWRMMLNAPTTLRIRKLASKVTIILGGAASGKSAFAEQACVKTGKSRVYWAT
SQIFDSEMQEKVARHVDQRGAGWTTIEEPYEAKTALGAAQSQDVLLMDCATMWLTNHLLAENDLEKETRV
LLEAIKDCPAEVVIVTNETGLGIVPENALARRFREAQGRLNIALAAAADTVVLVAAGLPMTLKGTT
>gi|99080297|ref|YP_612451.1| RNA polymerase factor sigma-32 [Ruegeria sp. TM1040]
MALDETTKNPLPKQAMKAELLDAETELALAYAWRDEKDVQALHRLITAYMRLAVSMASKFRRYGAPMNDL
IQEAGLGLMKAAEKFDPDRGVRFSTYAVWWIKASIQDYVMRNWSMVRTGSTSSQKSLFFNMRRVQAQLER
EAAGEGVELDRHKLMQMVAEEIGVPLRDVEMMDGRLAGADFSLNAVQSADEDGREWIDALEDDSEQAADR
VEADHDRRQLREWLLSALNGLNERERFIVRERKLREEARTLESLGNELGLSKERVRQLEAAAFSKMRKSL
EGQSREVQNFLA
>gi|99080298|ref|YP_612452.1| hypothetical protein TM1040_0457 [Ruegeria sp. TM1040]
MRNMHFRRGPGGRQFHLAAVLALLPFITNAQALAETKLAHIIEEAKQADVVLLGEIHDNPAHHKVQSEVI
AEIAPVAVVWEMLTEDQAARLTPDALSDPAGLGEVLDWGESGWPAFAMYQPLFEAAPEAQHWGAAVPRSV
ARDAVAKGAVAFFGVEDAARFGLDLALSQEEQAAREAEQQAAHCNALPYDLLPGMVEVQRLRDATLARVA
LLAREAAPAGAEGPVVIVTGNGHARLDRGAPVYLRYAAPDLDLLSLGQAEDGQIRGEFDLVRNAAPIARP
DPCAAFY
>gi|99080299|ref|YP_612453.1| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase [Ruegeria sp. TM1040]
MLSGKHILLIIGGGIAAYKSLELIRRLQDQGARVTPVLTRAGEEFVTPLSVSALAGNAVHRDLFDLTAEA
EMGHIQLSRSADLLVVAPATADLMAKMAQGHANDLASTLLLATDTPILLAPAMNVRMWEHPATQRNLTQL
KNDGVSVVGPNEGGMACGEYGAGRLAEPEEIIAAITTRLAAGPLAGKRIIVTSGPTHEPIDPVRYIANRS
SGAQGTALARALRALGAEVVFITGPATVRPPEGVQVVPVETASDMHAAVQAALPADAGVFAAAVADWRVA
SASDRKLKKTKDGMPRLAFEENPDILREVASQTQDRPGLVVGFAAETNDVVEHATAKRLRKGCDWIVAND
VSPATGIMGGAENAVILITAEGEEHWPRMPKDQVAQRLAEKIAATLTPPVSGG
>gi|99080300|ref|YP_612454.1| hypothetical protein TM1040_0459 [Ruegeria sp. TM1040]
MTQPAGDILVLEDDITLGQLLCNMIRMYRLGDPYLSLSEVDACQMLRERDFKLCFLGLRLRSGVCKRAVA
EADARMVPTLLMVDSEGLEELVPPPRRGLVLQMPAREEVIRAAAVTLLEQNAAD
>gi|99080301|ref|YP_612455.1| MCP methyltransferase, CheR-type [Ruegeria sp. TM1040]
MSDRSIPFLVGIAASAGGLEALSELVQELGEQNEAAYVIAQHMSPNHKSMLSALISRETRLPVRELTPDA
DIWPEANTIYVVMPGHDVIVTEGGQLGLRAPSGLRGQPKPLADLLLKTMAEECGENCAAIILSGTGSDGS
YGVRAIREVGGITIAQDPESSKYSGMPTSALQTGCVDLTLRPREIGEHLGKILSRPRDFTELQELHQKPN
HLSDLFQILTARTGVDFREYKASTINRRIARRMLALGFSEYNAYVDFCRSDLAEVDALYKDLMISVTRFF
RDPQQFDALKADIQKLVAKLESSSDQRTVRVWVSGCATGEEAYSVAILFLEAMGGLEKVSQRRLQVFATD
IDQHALDVARRGEYPISAINDIPQELVDRYFVERTDTIEVKKALRAFVLFSRHNVIQDPPFTNLDCVSLR
NLLIYFNGPLQDKVLARIGYALVPDGLLFLGAAETVGGMETIFEPTSTSDRIYRKRLVTRKPALQPFIED
ATARRPLEQSALPYLADKNKHHSATRQFDNLIRVLAPNGFLASATGAILRVIGDISFVTALTENTGLQVD
LKILLPELRSEASSLINVTLRSRGVRSGQWHPLPRSKHEQVRLTCYPIVSAPDGEMDGNSIVLIGVESRI
KEEQAAPPESRNPEEQDRYIRQIEDEVISTREALQQTIEELQTANEELQSVNEEMQAANEELQSTNEELE
TSNEELQSTNEELITVNEEIQVNSSEIQHLSAELSAVLRANPFVMIVVDQALQVRHASRQAMTMFELDAL
PKSGIHISQCAPVEGMPDLTSRISHVFRTSAPLVENAEFGGASHEMTFTPFREREGRDLIGVAVTIV
>gi|99080302|ref|YP_612456.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Ruegeria sp. TM1040]
MTASQFAVDVKIIDPRIRDWGMPSYQTQGSAAIDLFACIDAPKEIAPQAPAVLIPSGLAFYMGDQSCAAL
VMPRSGLGHKKGLVMGNNVGLIDADYTGEVFISAWNRNPPGAAPIVIEPGERIAQLMFVPVLRATLNEVE
TFSNSTERGAGGFGSTGSGATGA
>gi|99080303|ref|YP_612457.1| UBA/THIF-type NAD/FAD binding fold [Ruegeria sp. TM1040]
MILVLGLAGLIWWGGRLFGASQSMRWALLGLLFLAVLSIQLTLPEGNPLRAATGGSASLWLLIAGTGALV
ALYGRVLKRLRNRADAREDSADAPEAAAPFRDSELDRYARHIVLREVGGAGQKRLKDARVLVIGAGGLGA
PALQYLAAAGVGTIGVIDDDRVENANLQRQVIHRDADIGMPKVFSAQAAMEAQNPFVTVRPYHRRLSEDI
ASELFAEYDLILDGTDNFDTRYLANAAAVAQRKPLISGALSQWEGQISVFDPASGGPCYQCIFPESPAAG
LAPSCAEAGVIGPLPGVLGAMMAVEAVKQITGAGEVLRAQMLIYDGLYGETRRIALKARADCPICGPNAG
TPAPTGEN
>gi|99080304|ref|YP_612458.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MTRTFALTALATAVFATGALAADLPDLEGREVVFATENTYPPLQFIDPNSGEAIGWEYDAVAEIAKRINI
TVVYENSSWDAMIPAITASQYDVAMNGITIRDDRKEKVDFSESYLTSQMRMIVAGDEDRFEDAAGFAADD
DLLAAAQPGTTPFYVTVYDVLDGDEANPRIKLFETFGASLQALRAGDVDLALSDSTAASGVVAASDGALK
IVGEPLGTEDFGFIFPKGSDLVEPVNAALAAMKADGTLDALNKKWFLDYKMGQ
>gi|99080305|ref|YP_612459.1| amino acid ABC transporter permease [Ruegeria sp. TM1040]
MTNRHKREDKEDFPWWLVAVGLTALYLGIEVALSDVYAQIMNTLWRGVGITIFVTIVSFFSASALGLALA
LGAESRWLVLRQVCRFYVEVVRGVPIIVLLLYVAFVLAPALVDLRNWLGGFLGLEDIRTRNFPLLWRAIV
ALMIAYSAFIAEVFRAGLQSVPDGQIEAAKALGLSGWKRFRFVVFPQAIRTILPPLGNDFVALVKDSSLV
SVLGVLDITQLGKVTAASNFRYFETYNMVALIYLAMTISLSLALRALERHLRSKQEHR
>gi|99080306|ref|YP_612460.1| peptidyl-dipeptidase Dcp [Ruegeria sp. TM1040]
MTNPLLRDWQTPFGIAPFDQISDEDFAPALDEALKAHTAQIDAIATNPAPPTFANVIEALETPCQPLEQV
LSVFFSVAGADSNPAREALQRAFSPNLAAHFSAITANKALYARVQAVWDQRDTLDLTDEQARVLMLTHRG
FVRGGAALNGAEDTRMQEIKSRLATLGTNFTQNLLADERDWFMELSEDDLEGLPDFVVKAARTAGAEKGV
SGPVITLARSIVTPFLQFSPRRDLREKAFRAWAARGANGGAHDNRAIAAEILSLREERAKLLGYRNFAAY
KLETEMAKTPEAVRELLMDVWGPAKAQADKDAEVLTRMMHEDGINGDLAPWDWHYYAEKRRKIEHDLDEA
ELKPYLQLDRMIEAAFACANRLFGLEFAPLDVPLYHKDCRAWEVTREGKHLAVFIGDYFARGSKRSGAWC
SAMRAQAKFPEEQTPIVVNVCNFAKGDPALLSYDDARTLFHEFGHALHQMLSNVTYESVSGTSVARDFVE
LPSQLYEHWLEVPEVLQEFATHAETGAPMPKEMLDKVLGAATFNMGFQTVEYVASALVDLEFHDGSAPED
PMVKQAEVLAQIGMPAAIVMRHATPQFAHVFSGDGYSSGYYSYMWSEVMDADAFESFEEAGGAFDPARAA
ALEAHILSKGGSEDAAELYTAFRGRLPGVDALLKGRGLAAK
>gi|99080307|ref|YP_612461.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [Ruegeria sp. TM1040]
MINALFAARPERWDTYEPTLRAAFEAEGLAVDLRQDFAPEDVDYIVYAPNSDLQDFRPYTRCKAVLNLWA
GVEKITTNETLTQPLCRMVDPGLTQSMIEWVTGHVLRYHLDIDRSLALQNSWSPYIPPLAEERPITILGL
GALGQACATALTQLGFPVSGWSRTAKSVAGVTCHHGPEGLNAALAEAQIVILLLPDTPHTQNILNAQSLA
RLPKGARIINPGRGPLIDDEALLAALETGQIAHATLDVFRIEPLPEDHPYWAHPKVTVTPHIAAETRPIT
ASRVIAENIRRGEAGEDFVHLVDRNRGY
>gi|99080308|ref|YP_612462.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MSIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGRVGEHMVPMPH
LGVILPQDEWVRLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGNPIEVKGFADMDGVFAT
>gi|99080309|ref|YP_612463.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MDTRFVASLLAIIEEGSIAAAARRSGVTASALSQRISALEAELGVTLLRREGRMVQPTHACRSVLPRLRA
MLRLEQDLRADLRGQRLAGPLRVGAISTALGDWAAQLLRHLHHAAPDVDLRFVPGTSPGLMALLEAEEID
LALVVEPPLSLPKSLRFQQMFQEPVGLLRPALDSASTLPYLVYSREAWGGAICWSALTAREPNPSVLVEM
DALEALAQMVEDGVGQAVLPAWRSLARHAPAARFTAWPGVYRSIGLLHRLRDQDSPFLTLVREGIGQEGG
P
>gi|99080310|ref|YP_612464.1| rod shape-determining protein RodA [Ruegeria sp. TM1040]
MSYLEYHAKSTPTGLRKILFLNWPLVLLLCAAAGVGFLMLYSVAGGSFSPWVEPQAKRFLVGLGVMLVVA
MVPIWFWRNISVLAYLMALVLLVAVELFGSVGMGAQRWVDIGPLRLQPSELMKITLVMVLAAYYDWLPAN
RTSRPLFVLVPVFLILAPTFLVLKQPDLGTSILLLTAGGGVMFLAGVHWAYFAAVIAAAGGLVAAVFQSR
GTDWQLLKDYQYRRIDTFLDPSQDPLGAGYHITQSKIALGSGGWSGRGFMQGTQSRLNFLPEKHTDFIFT
TLAEEFGFVGGVMLLSIYVMIIVFCVATAISARDRFSSLVTLGIALNFFLFFAVNMSMVMGLAPVVGVPL
PLVSYGGSAMLVLLAAFGIVQSANVHRPR
>gi|99080311|ref|YP_612465.1| peptidoglycan glycosyltransferase [Ruegeria sp. TM1040]
MKRNQKDQDHSHRKLARRTLLLGGLQLGFTGALAMRMRFLQVDQADQFRLLAEENRINIRLLAPSRGEIY
DRNGNIIAQNSPSYRIVLVPEDAGDVEEVIANLNRLLPLDEEDLERARNEMRRSRPFLPITLADQISWDD
ISKVAVNAPALPGITPEVGLSRVYPQGPDFAHVVGYVGPVSDYDLSKMEDPDPVLLTPRFQFGKVGFESK
QEDSLRGKAGIKRVEVNAAGRVMRELDRREGEPGADMQLTLDADLQSYVQARLGSESAAAVIMDVENGDL
RAICSSPSFDPNLFVRGISVADYRALTEDPYRPLANKTVQGTYPPGSTFKMVTALAGLEAGVITPAETTW
CPGHLEVSGRRFHCWKRAGHGHVNLLDSLKSSCDVYYYDLAIKVGMDRISEMANRLGLGVRHDLPMSAVA
AGLAPNREWKSRTYGQDWLVGDTVNASIGQGYMLASPMQLAVMTARIASGREISPRLVKSINGIEQPSGL
GEPLGLNQNHLNHVRKSMYAVSNDRRGTGYRSRIIAEDMRMAGKSGTSQVRNITAAERASGVIRNQDLPW
ERRDHALYVCYAPYDNPKYAVSVVVEHGGGGSTAAAPIARDVLLQALYGGTPPLEAYPRGDRSKIQAQQE
RLQREMHQREESGGSDRA
>gi|99080312|ref|YP_612466.1| putative rod shape-determining protein MreD [Ruegeria sp. TM1040]
MAKTSPAAIWLMRAVFAGVALLIMFFHLLPLDTMPRRWSPPDLLLAFALAWSSRRPDFVPPLLIAAVMLL
ADLLFQRPPGLWALLALLACEFLKSRLSTHRETPFLGEWVAVSIVMIAIALLNRMILGILAVEQAHIALI
LVQVIMTIAAYPLVVLISQSLFGVRRLSAADAETLGARL
>gi|99080313|ref|YP_612467.1| rod shape-determining protein MreC [Ruegeria sp. TM1040]
MAKDRSQREDYAGPLKRLLVGLLVLVLAVIFLVWRIDSPRVERFRAQVVDAVVPNMQWAMAPVTGAINLV
RDFQSYQRLSEQNRELRSELRQMRAWKEAALQLEQENARLLDLNNVRLDPQLTYVTGVVLADSGSPFRQS
VLLNVGARDGIQDGWAAMDGIGLVGRISGTGLDTARVILLTDAASAVPATLQPSGQTALVSGDNTAAPLL
NFVENPELVRPGDRVVTSGDGKVFPPGLLIGQVAQDRAGRLRVRLSADYERLEFLRVLRHQGSAPISDPG
ALIAPVPDDMIPLPRPEGFLERAAPGGTQDEGDNG
>gi|99080314|ref|YP_612468.1| rod shape-determining protein MreB [Ruegeria sp. TM1040]
MALFGNLGGLFTSDMAIDLGTANTLVYVKGRGVILSEPSVVAYHVKDGVKKVLAVGEDAKLMLGRTPGSI
EAIRPMREGVIADFDTAEEMIKHFIRKVHKRSTFSKPKVIVCVPHGATPVEKRAIRSSVLAAGARRAGLI
AEPIAAAIGAGMPITDPTGNMVVDIGGGTTEVAVLSLGDIVYARSVRVGGDRMDEAIISYLRRQQNLLIG
EATAERIKTSIGTARMPDDGRGQSMQIRGRDLLNGVPKEIEISQAQVAEALAEPVQQICEAVMTALETTP
PDLAADIVDRGVMLTGGGALLGDLDLALREQTGLAVSIADESLNCVALGTGKALEYEKQLRHAIDYDS
>gi|99080315|ref|YP_612469.1| hypothetical protein TM1040_0474 [Ruegeria sp. TM1040]
MSLRTSLKPGVAIALALIFSLPHSALHANSAGFSLVGDGGFFMRTSTPSAREAILNDDATGRGAVSMNPS
AASLFRGRSSGSLFARAAVAVGVDVAEIMNVIASAEAGRANYDAVQHGAKIKPPAKPTDMTLLEIYTWID
ATPGQPHAIGRYQFIPATLRRLVKHQGVPLGRKFNKSLQDQLAHQLIEEAGLSQFKAGEISQTKFMNNLA
KIWAGLPTSNGKSYYHNYAGNRATVTWDTYKARMDAIFSG
>gi|99080316|ref|YP_612470.1| hypothetical protein TM1040_0475 [Ruegeria sp. TM1040]
MLSYQHIYHAGNLADVQKHALLAWMLDYMTQKDKPLSYLETHAGRALYDLGSSEALKTGEAAKGIDIARD
WFAPEHPYARVLELVQAQHGATSYPGSPQIAAELLRPGDRLHLAELHPQEAAALREAMRGSGAKVHVQDG
FEMVQSLAPPEPRRGLVLIDPSYEIKADYARIPGIIAKLHRKWNVGVIALWYPILSDGTHVPMLKALEAH
ALPEVFRHEVRFAPARDGHRMVGSGMFVVNAPFGLSQEAVRLDAKFASL
>gi|99080317|ref|YP_612471.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MPAAFYGLSTRIYALVALALVAAASLTFYTLNHASQTAYDLRAGELRHITDIARSHLDAHNARVEAGEMT
QAEAQASVAQILNDLRFGENGYVYAFDSDIVYSVHPFRPQWVGGESQRDLKDVHGNRIFENILGNLDAEG
HSLSTIYFENPATKAVEPKLTYAQYYEPWDWYLGTGAYMNDIEADIAQMRMQALMGLGVALAVLIGVSLL
IIRSMLPPLDALKARMATMADGDLDADVPGLSDRSEIGQMAHAVANFRDGLQMQAALEAEAHIKDEERQR
VVAILSQRLAKFAQGDLTVRVDDAMPDEFRQVAEDFNATVTQISDLMRTLVAGVERIESESESLDSSSRE
LGMRTETQAASLEETSAALTELSASVKNSAEESRAASERVQQASERTERGAQVVRRTIEAMQGIEESSDK
ISSITSLIDDIAFQTSLLALNAGVEAARAGEAGRGFAVVAGEVRALAGKSSDAAREIAELITNASREVET
GVSLARDSGTALDEINAHISAINETVSALAEAAREQATSLSEITSAADQLDQVTQQNAAMFEETSAATQR
LRDEANALAQNARQFQVDDADPAAQRRAS
>gi|99080318|ref|YP_612472.1| isocitrate dehydrogenase, NADP-dependent [Ruegeria sp. TM1040]
MAENSTPDILYTIVDEAPELASASFLPIIRKFADAAGVSVGTKDISLAARIIATFPENLTEEQRQSDDLA
ALGELVKTPDANVIKLPNISASVPQLVAAIEELQAQGYKLPDYPYEPATDAEKEIRARYDTIKGSAVNPV
LREGNSDRRSAKAVKNYAQNNPHSMGAWSGDSKTKVSSMPGNDFYANEKSATISAEQAGDAKIEFVAKDG
SVTVLKDGWPLAEGTVADATFMSAKALAAFLSGAIEDTKADGTMFSLHMKATMMKVSDPIIFGHAVKAWL
GPVWDKHGAAIAAAGGSPNSGLGAVLAAIDSLPNADEIKSEIAALERPSMYMVDSDKGITNLHVPSDVII
DASMPAVIRAGGKGWDETGAKGDTNCVIPDRCYSTVYDETINFFKANGALDVTTAGSVANVGLMAQKAEE
YGSHPTTFEAPADGEIRVILANGETLHSHEVEAGDIWRACTVKKAPIENWIQLALDRQRLTGSEAIFWLD
ANRAHDAELIKYVKPALDAAGVADKFLIMAPREATRQSLETITAGKDSIAITGNVLRDYLTDLFPILELG
TSAKMLSIVKLMNGGGLFETGAGGSAPKHVQQLVEENHLRWDSMGEFCALGESLKFLADVKGNEKAGVLG
AAAEVATQGILDNNKSPERKVGQPDNRDSHYWFARYWAEALAAQGDDAELAAHFKPIAEALASNEAAILS
ELAAAQGGAADIGGYYHPSVEKKAAVMRPSATLNGIIG
>gi|99080319|ref|YP_612473.1| glycosyl transferase, group 1 [Ruegeria sp. TM1040]
MRSMAAGDLFIYAPVPVYRDAGTLYIERQAVNGLRLWSQHFSRVTVLMPEKNHDVPKGWIPVDMALADLP
AVRLETVPSAFTPLQFLRAWRRERRRIGALVAEASYLSFAIGGLFGDWGAVCALEALRQRKRFAIWTDRV
ESDVLRKSRDWGDWKQRLKSRLYSRPMAWLERALISRAALGLFHGRETFDSYAGFSPNPQLVHDIHISGR
DHIRTSALQKKLSGLGARPLRIVYAGRAEGMKGPGDWISVLERLAVLNIPFEAEWLGEGSCLAMMRNRVR
RAGLEDQVRLPGFLEDHAEVRARLQRADVFLFCHKTAESPRCLIEALTGATPIVGYEGGYARDLIAGHGG
GILVPQGDTERLAQTLSMLQGAPDTLATLMQSAHLEAAPFTDEKVFAHRCDLIRRYLAPSASRRGPGGPG
GRILRVVAER
>gi|99080320|ref|YP_612474.1| hypothetical protein TM1040_0479 [Ruegeria sp. TM1040]
MGIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTLGPVTNLPLPR
YVSMKAAEGNVRRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQGGWVHYALLSGVRTVLVEQD
LVQVRARPQEDAPAVAAFELGVVAQLGACTRDWCEITAGGHSGWTHKDNLWGVDPDELRE
>gi|99080321|ref|YP_612475.1| glycolate reductase [Ruegeria sp. TM1040]
MPRERLSVVVTRRLPEPVETRLSELFDVRLRTDDTPMTRTELAAAMKEADVLVPTVTDTIDAGLLGQAGE
RLRLIANYGAGVDNIDVATARQRGILVSNTPGVLTDDTADMTMALIMAVVRRIPEGLAIMQRGDWEGWSP
TAMLGGRLAGRRLGILGMGRIGQAVARRARAFGMQVHYNNRRRLRPEVEEELEATWWESLDQMVARMDVI
SIHCPSTPSTFHLMNARRLKLLKPDAVIVNTSRGEVIDENALTRGLRAGEIAGCGLDVYEHGTTVNPRLR
ELPNVVLLPHMGSATIEGRIEMGEKVLLNIKTFEDGHRPPDQVVPAML
>gi|99080322|ref|YP_612476.1| hypothetical protein TM1040_0481 [Ruegeria sp. TM1040]
MASAALPPSRSTRAPASTASGFAAATIQFSASTGVPASRAAIAAAAASESESPAAPAPVVAVSGATASAA
CCADKGCASAAQSAAPKNNGLISFLPNRAARVAPDSALTTWQAPPDPVGDAHLQMS
>gi|99080323|ref|YP_612477.1| gamma-glutamyltransferase 1 [Ruegeria sp. TM1040]
MGTPGTPALLEAAHRKWGRANWGGLFTDAIRLAELGFAVSPRMADSIANDAERLGRFPETAAYFLPEGIP
LAAGEVITNQPYANVLRRIAMEGTRAFYSGPVAADIVRAVQGATGNPGVLSELDLALYQVKERPAVCASY
RAFEACGMGPPSSGALTVGQILGMLEPYDLAALGPDSPESWRLIGDASRLAFADRGRYMADSDYVPVPTK
GLLDPEYLSKRAALLEGDAALETVAPGAPEFDHALIWADDESIEFPSTSHISIVDQYGNVLSMTTTIENG
FGSRLMTNGFLLNNELTDFSFRSHRDGVPIANRLEPGKRPRSSMAPTIVMQDGKPVLAIGSPGGSRIIGY
VATAIIGWADWGLDIQDAISLPHAVNRFGTYDLEAGTGAEALEAALTDMGYQVNVRDLTSGLHAIEIDNG
LKGGADPRREGIALGDE
>gi|99080324|ref|YP_612478.1| FAD linked oxidase-like [Ruegeria sp. TM1040]
MVQAITLPRNEGGIKAAIAALSEAFGDRLQTGQALREQHGHTTTWIDNQAPDAVVFPTSSEEVSGIVKIC
AEFGVPIIPFGTGTSLEGHVNAPAGGICVDMMRMDQIVAVHAEDLDVVVQPGVTREQLNTYLRDQGLFFP
IDPGANASLGGMVATRASGTNAVRYGTMKDNVLSLEAVMADGSIIRTASRAKKSSAGYDMTRLLVGSEGT
LGLITEITLKLQGIPEAIRSARCSFRSVDEACQAVMMTIQYGIPVARIELLDEMSVRAANQHSGLDLPEV
PLLLLEFHGSDAGVVEQSDTFAQIAEEFGGFDIAATSTPEERNKLWQARHDMYWASLGLRPGAKGISTDV
CVPISKLADCVSAARSKAEEMGLIAPIVGHVGDGNFHALLLIDMESAEEREKADTYVSWLNDLAISMEGT
CTGEHGIGQGKRPYLVRELGETTRFMAAVKAALDPDNILNPGKILIDG
>gi|99080325|ref|YP_612479.1| hypothetical protein TM1040_0484 [Ruegeria sp. TM1040]
MFFIRRLLSLFRFYMFILICGLIMVGVDYDMQAKAVGRTIATYDVDSYRLTLQRRLGGEPLRVASDGRVG
APEGEVTSPLDVAFRALRGLAVAKAHVMGQDLEMEQVVLLPPPSATQVPIPQQPQTMPVRDTQEQRPCVR
RGNVLDC
>gi|99080326|ref|YP_612480.1| glutathione-dependent formaldehyde-activating, GFA [Ruegeria sp. TM1040]
MSDQISEKSGKCACGAVQFKVLAPDTYGACHCQMCRRWTGGVWMGVVCTKVLSIEGPVRSWESSRIGSRG
SCRYCGSSLWHKPRHSEHYTFGQGLFDDQTGWYLRREIFSDEKPDHYALADKGQTALTGWGTLWAVILGR
LPK
>gi|99080327|ref|YP_612481.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MKTQVKALVVGGGAVGTSIAYHLAKAGWDDVMLIERDELTSGSTWHAAGLLPLFNMSYATTHIHKYSVDF
YKTLEEETGLNAGFAVVGNLRMAQTQERMDEYMLYASTAETCDVAYEWLTPEQIKERWPLIETGDLKGAI
YHTEDGYINPADVTQAMAKGARQRGVEIVRKMQADAFHWNGTHWEVTCTVMAEKGGNLVETDEQVVITAE
HVVTASGNHAQRTAKMLGIKMPAIPVEHTFIVMDKDPELVKWREAGNPEHPVIRDADNESYAREERGGWI
LGIYEHGAPARFEHGVPDSFRADLFPLDLDRIAEQYMAMAERVPSCADSGLKDDFNGPICYTPDGNPLVG
PAPGLRNMWLAEGFSFGITAAGGTGYYLAQMMVDGEAEIDMASLDPKRYSSNWMTTEFAARKNEECYEHV
YILHHPDEERPAARPLRTAPAFDRQKARGAQFGWVNGWERPNYFGPVDAPDNFDEEARSFRRGGWWQHAV
DEAKAIREGVGLIDATAFTKHVVKGPGATQFLDWFTCNKLPKVGRINLTYALTAFGTTRTEYTIVRNGEN
NYYLVSAGAWSEYDADFLRKAAEDKMEEFGYIEIQDVTTQWGVFAIAGPKSRDVLKEVIVDADPATALSN
KRFPWLSAKQIELGMCPVNAIRVAYTGELGWELHHPIEMQNYLFDLLEKAGEKHGMKLVGARAQNWLRQE
KSYRAFGNELGRDATPLEADLPRFVDLEKDFHGKDKLVETGVRVKCCTLLIDGPEDADPWGREALYAEDG
TRVGRLTSGGYSVAFEKSIGMGYVKPEMAVEGTKLKVKIQDKLWDAVVTCDSPYDPKNETIRKDG
>gi|99080328|ref|YP_612482.1| hypothetical protein TM1040_0487 [Ruegeria sp. TM1040]
MILSKFLAVVADIPARYLDSITRGFCVALLLGLAVKSVLLSHWALSAILVVLAGIILVNIIALHLEREAF
IPLWMLVTVLTATVILTTCYVGLSGATWMFPTLVGLRFAAPPSQYQPARLVLIAVVPLVVLLQGDPGNAA
RLLAAGLITSAYLWLAEGEIVSLRSRLDGDDGRDPVTRAFSRARMEQDKSMIASHAPVGLVVVRLDGLMD
LRVRGEGARADDIMASVAAAIIPLLSTRERLYRLGSSEFLIGLAGWRAFECFELGQTVCKTVQPHLPKGI
RARSGVAEVTTPQDFDAALDLASSMVSKSGDLGRSVLSTAL
>gi|99080329|ref|YP_612483.1| calcium-binding EF-hand [Ruegeria sp. TM1040]
MAQPLPSFVASAPSGPRVLTLAILCLVATLGAQTAGADPDFLASLDFDGDGAVTVSEVALVRNQKFEQID
RDGDGFIDADEFDRSLQETRTRFRQMGQGYEEHRASPGRIDAFTFADSDADGLISRREFHRHSDRFAQSL
DRDGDGIVSDRDMAR
>gi|99080330|ref|YP_612484.1| hypothetical protein TM1040_0489 [Ruegeria sp. TM1040]
MPFRSVPGQASVAEQSEGGKLFAPSAARNLEPLLQIVSQHAPQRGRALEIASGTGQHVIGYARALPDIAW
HPSDIDPSRRASIDAYASEAGLTNIAPAAALDATTEGWGALIGPFDLIVLSNLLHLISNTEAQTLLSEAA
TALTRSGRLLIYGPFSREGLLVSAGDKAFHTALTEHDPDIGYKNVETVSIWAAEAGLQMAPPNHMPANNL
CLVLTTT
>gi|99080331|ref|YP_612485.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MIDTLIIGGGVAGLGAAAHLSPSHQVVVLEREEVLGYHASGRSAAMFEQDYGPPAIKALSRASRTFFEAP
GEGRETYLSPRGLMLVGRADQRAAFDADLAELDLQEIPINDALARVPILNREVVAFAALHDTATDIDTDR
LMGDWTKDLRRQGGQTVLRQEVMTISRTDKGWRVETRDTQYEARQIVNAAGAWADIIAETAGVTPIGLQP
KRRSIAQLPAPEGRDVANWPMLMGVGEAWYAKPQAGKLLVSPADADPLPPQDAWADDMVLAEGLARYEEM
VTTPVTRLETSWAGLRSFAPDGVPVIGEDPDHPGFWWYAGQGGYGFQSAPASARLLRDLMTGQRPEIAPH
IIDALDPARLR
>gi|99080332|ref|YP_612486.1| aldo/keto reductase [Ruegeria sp. TM1040]
MIRPNSALRAPGLRVSLRRMTAQTCPPLTTLDGHDVGRFAFGCMQFGGRADAQASAEMYEACRAAGLRHF
DTAWLYTEGASEEILGQLIAKDRESLYVATKVGFTGGASAANMRAQFDQCRQRLKLDQVDLLYLHRFDPE
TPLEDTLTCFAELKQEGHIRHVGLSNFAAWQVMKAVALAARLGLRIDVLQPMYSLVKRQAEVEILPMCAD
QGILPVPYSPLGGGLLTGKYAQGGTGRLSEDENYRARYGQDWMHRTASDLLHLAEDLGTDPATLAVAWAA
GHPARPAPILSARSATQLAPSLKATEFDMSPELYARIEALSPRPAPATDRLEEA
>gi|99080333|ref|YP_612487.1| CDP-alcohol phosphatidyltransferase [Ruegeria sp. TM1040]
MFDAKIRPLIDPFLNAQGARLAARGVTANQVTLAGLGLGLASAGLIAIGLTCWALAFLLASRMADGLDGA
VARQHAPSDFGGYLDIVCDFVFYGAVPLGFVALAPEANGLAGAFLLCSFYANGASFLGYAVLAEKREMKT
SARGVKTLYFTGGLLEGAETIGFFVVLCLWPDGFAPLAYVFGTLCFATAASRVVLAAKVFSA
>gi|99080334|ref|YP_612488.1| basic membrane lipoprotein [Ruegeria sp. TM1040]
MKLTKLLASAAVALGLAAGGALAEDKTKVGFVYVGPVGDGGWTYEHDQGRKAVVEEFGDAVETVYVENVA
EGPDAERVITQMALQGADLIFTTSFGYMDPTINVAKKFPNVKFEHATGYKRAENVSTYSARFYEGRAVQG
VIAGHMTESNIIGYIGSYPIPEVIRGINSAYIHAKKVNPDVQFKIVWAFTWFDPAKEADAAKVLIEQGAD
VILQHTDSTAPQAAAQAAGNVITFGQASDMAEYAPKPRVSSIIDNWAPYYIARTKAVMDGTWTSVDTWDG
IGPGMVGIGEITDAVPEDVKAEALALKDAIASGEYHPFTGPLKKQDGSVFLAEGETADDGTLAGMNFYVE
GIEGTIPE
>gi|99080335|ref|YP_612489.1| inner-membrane translocator [Ruegeria sp. TM1040]
MDLSAINPVLLIASLMVAATPLLLAAIGELVVEKSGVLNLGVEGMMIVGAIAGFATAVETGSPLLGFVAA
AAAGALLSLLFVIMTQVALANQVASGLALTLFGLGLSALMGQRYVGVKPPQMGRVDIPLLSDLPVVGRIL
FGHDVVLYFGIALTAAVWAVLKYSRVGLILRAVGENHDAAHALGYKVVKIRTLAILFGGACAGLGGAYIS
LIRVPQWTEGMTAGIGWIALALVVFASWKPWRALLGAYLFGGVTVVQLNLQAAGVAIPVEYLAMSPYLIT
ILVLVILSADKSSAPASLGRSFHASR
>gi|99080336|ref|YP_612490.1| inner-membrane translocator [Ruegeria sp. TM1040]
MIRLEKRPQPSRVWSMATPLLAVLATMVMGGLLFATLGKNPVEAIRTIFWEPLFGEFAFYYRPQLLVKGA
PLVLIAIGLSLGFRAGIWNIGAEGQYIIGALTGAGVGLAFYPTDSWVIFPLMVLAGALGGWAWAMIPAVL
KTRFGTNEILVSLMLVYVAEQLLASMSLGLMKNPEGFGFPGSRNLQQYESAHNAELIAGTGMHWGVVAAM
IAVIFSYVLLNRHMLGYHIRLTGEAPRAARFAGVKPARLVLFCLGMSGALAGLAGMFEVSGPSGQVSIDF
NVGYGFTAIIVAFLGRLHPVGILLAGALMALTYIGGDIAQGNLGLPSSAIQVFQGMLLFFLLALDLLTNY
RIAIGKPEAL
>gi|99080337|ref|YP_612491.1| ABC transporter related [Ruegeria sp. TM1040]
MSTPPLLTLDGLTKAYPGVVANDQVSFTIGTGEVHALLGENGAGKSTLVKMIYGLVKPDSGRMTLRGAAY
EPSEPRQARADGIAMVFQHFSLFDALNVAENIALGMESPPALRDLAARIREVSEAYGLPLDPYRTVGDLS
AGERQRVEIIRCLLQDPKLLIMDEPTSVLTPQEVEILFETLRKLKSEGTSILYISHKLEEIRALCDHATI
LRLGKNVGECVPRETSAREMAELMVGSALKTPERGARRFGDVALDISGLSVPAPSAFGTALKNVHLTVRR
GEILGIGGVAGNGQDELLSVMSGEVTTARDAVKFDGQPIGRMGPTARRALGVLSAPEERLGHAAAPDMSL
TENALLTGSVREGLEQNGFLKWGATKSFAEKIIKAFDVRTPGPENAARSLSGGNLQKFVIGREVLQRPEV
LIVNQPTWGVDAAAAAAIRQSLLDLAAQGTAVICISQDLDELMEISDNFAALNEGRLSAPRPTGELTVDE
IGLMMGGAHGMEVAHV
>gi|99080338|ref|YP_612492.1| molybdenum cofactor sulfurylase [Ruegeria sp. TM1040]
MGFDVEALKAALEAHGRVIRVVVAEVKGSAPREVGAAMLVWDGGQSGTIGGGTLEFEAADAARRQDAPYR
LSTHALGPDLGQCCGGAVTLLSEVYTEVNIAQLTGQVISRAVAPGPEPLAVSRILNHARAQGLAPAPQLI
AGWMIEPVACATRPLWIWGAGHVGRALVEVLAPLPDYAITWVDVMRSKYPQEIPASVTALPAQEPGRLVP
HAPTEAYHLILTYSHQLDLALCHRLLEHGFDFAGLIGSKTKWARFRARLAALGHRPEQIARLTCPIGMPE
LGKHPHAIAIGVAAELMALSQRLDLKKEHSA
>gi|99080339|ref|YP_612493.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein / xanthine oxidase [Ruegeria sp. TM1040]
MSVSTPLPHDAAALHVTGQARYVDDIPTPKGTLHLAFGLAPIASGSITAMNLAEVHASDGVVAVLTADDL
PFDNDVSPSAHDEPLLAKGEVHYLGQPVFLVVATSHRAARVAARKGDIEYRKTDALLSVEAALAADSRFE
DGPRIYEKGDAPAAIQASLHVIEDSFDIGGQEHFYLEGQAALALPQEDGGMIVNSSTQHPTEIQHKVAEA
IGLPMHAVRVETRRMGGGFGGKESQGNALAVACAVAARLTGKACKMRYDRDDDMTITGKRHSFRISYRAG
FDAEGRITGVEFTHLVNCGWAQDLSLPVADRAMLHADNAYAIPAIRIESHRLKTNLQSATAYRGFGGPQG
MVGIERVMDHAAQVLGMDPVELRVRNYYAAPLASKGGSAPRSATSPRDISGKEKDNTTPYGMEVIDFELH
EMTAQLVKSADYAARKAEISAWNARHDRLKRGLAFSPVKFGISFTLTHLNQAGALVHVYQDGSIHLNHGG
TEMGQGLFQKVAQVAAARFGVDLGRVKITATDTAKVPNTSATAASSGSDLNGMAVKAACDIIRDRMAAHL
AEVYQQPQSAVSFEKDQVRIGSERISFEAAAMQCYTGRVSLSATGFYKTPSLEWDRIKGAGRPFFYFAYG
AAITEVVVDRLTGENRILRADILHDAGASLNPALDIGQVEGAYVQGAGWLTTEELVWDETGRLRTHAPST
YKIPACSDRPDVFNVALYDGSNREETIYRSKAVGEPPFMLGISAWLALSDAVSRFGEGHPHLNAPATAEE
IWRATETLRHGV
>gi|99080340|ref|YP_612494.1| molybdopterin dehydrogenase, FAD-binding [Ruegeria sp. TM1040]
MTITFHLNGEQVSLAKPDPTTTLLDWLREERGLTGTKEGCNEGDCGACTVMVTDQSGAKALNACILFLPQ
LHGKSVRTVEGVAAPIGTLHPVQRAMIDHHGSQCGFCTPGFVMSMVTAHTNGATDHDDQLAGNLCRCTGY
APIIRAAEAAQDAPVPDHIAQDRSFTFSEIPLGEDADRGAEPPNALRPCSSDDLARVYAARPEATLIAGA
TDVGLWVTKHLRQLRDVIFLDGCRDLKKITISDAEVRIGAMADMNHLRAALAPLHPSYAEMLRRYASQQV
RAAATLGGNIANGSPIGDNPPALIALRATLHLRKGDMRRSLPLQDFFIDYGKQDRAPGEFIEAVSFDRQP
DSLRVYKLSKRFDQDISAVLGAFNVTVVNGNVTAAVIAFGGMAAIPKRATHVEEALVGRPWTEATLVAAQ
ATFDHDFTPLSDMRASAAYRLDCARNMLRRYFSDLNGAPEHVLEVQP
>gi|99080341|ref|YP_612495.1| DNA polymerase III subunit alpha [Ruegeria sp. TM1040]
MTAHPRFIHLRTHTEYSLLEGAVRLKKLPDLCKANQMPAIAITDTNSMFAALEFSVTLSGAGIQPIIGCQ
VDLTFEKSDPGEKPKFPAPVVLLAQDETGYEHLMRLSSCLYVDNGGQLPQVSLEELEANAGGLICLTGGP
EGPIGKLLQQGQRPAAETLMQRLKGMFPDRLYVELQRHPGEDGQPEAETLTERGHVEMAYAMDLPLVATN
DVYFPKTEMYEAHDALICIAEGAYVDQAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFM
AYRRDPILPKFADDEVDELRRQANEGLQQRLAVIPHAVPVEKYQERLDFELGIIESMGFPGYFLIVADFI
KWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIKYV
QQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLSKMIPVEGVKPVSIEKALQDEPRLAEEAR
NEPVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDF
LGLKTLTVIENAMKLIFKSGRDLHIGADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVES
TGMMDALKRMKPTCIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQV
MQIAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFANYGFNKSH
AAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFEEVKKGLQLPYVAPDINRSLATFDVVDGE
LVYALGALKNVGVEAMNMIVTARGDKPFVNLYDFARRVDLKRVGKRPLEMLARAGAFDVLDPNRRRVFES
LEGLVQYSAAIQEQKNSNQVSLFGEAGDDLPEPRMAGVPDWLPAERLSEEFKAIGFYLTGHPLDDYMPAL
KRKDVMTLDEVMAKAERGPFMAKMAGVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIFSDVLEKSRDHL
ETGSKVVITAEATMESDQLKLLMRSAGPVDSAIADAGRSSLRVYLESASAVATVATVLEDAKKAAKNASP
GEIYVYLQDPALPGDVEMDLGQLFPINPQIKGALKSLEGVMDVEEI
>gi|99080342|ref|YP_612496.1| hypothetical protein TM1040_0501 [Ruegeria sp. TM1040]
MARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFSPNNQARAWCS
EQSESLGVGTWSVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGWGVLYRSWEGDSEWWPVTNSN
NVRDFKNGYVFQSEVNSVKNKLGL
>gi|99080343|ref|YP_612497.1| SlyX protein, putative [Ruegeria sp. TM1040]
MQHLEEQIAYLSRTVDELNEVVTSQQADLDLLKRRVQMLMEREAQREAEGSGGAVFGDERPPHY
>gi|99080344|ref|YP_612498.1| histidyl-tRNA synthetase [Ruegeria sp. TM1040]
MAKAKKQPRPKAITPKGFRDYFGEEVTQRTHMLATIAEVYHHYGFEALESSAVETVEALGKFLPDVDRPN
EGVFAWQEAEDDGKGDWMALRYDLTAPLARVYAQHRNDLPSPYRRYAMGPVWRNEKPGPGRFRQFYQCDA
DTVGTASMAADAEICMMLSDTLEKVGIPRGDYLVRVNNRKVLNGVLEAMGLLEDDPKRDDVLRTIDKFDK
VGESGVRELLGKGRLDASGAYIDGVGLEDHQAEPVLAFLTSKGDTVTETMTNLRAAVGDSKVGQEGIAEL
ELMGSLFAAAGYGEDRILIDPSIVRGLGYYTGPVFEAELTFEIFDEKGRKRQFGSVAGGGRYDGLVKRFT
GQEVPAVGLSIGVDRLLAALREKGRLAATPTGPVVVTVMDRDRMADYQAMVAELRQAGIRAEVYLGNPKN
FGNQLKYADKRHSPIAVIEGGDEKDRGVVQIKDLILGAKIAESATLEEWKERPSQFEVPRTELVAKVREI
LVSQSSDREG
>gi|99080345|ref|YP_612499.1| ATP phosphoribosyltransferase regulatory subunit [Ruegeria sp. TM1040]
MPNRSQIEARAALLRQRFEVAGGVVVDPPLLQPADVLLDLYGEDIRARAYVTSDALRGEQMLRPDFTLPM
VQMHMKGGAEPARYTYAGQVFRRQEHDPERANEFVQVGYEVFDRTDPADADAEVFALFQLQLRGLELRVA
TGDIGILMAAVEGLNTTEVRKAALRRHIWRPRRFRALLDRFAGRTPMSESRKKLLSTTGPLTGSAPEIGK
RRTAEIDARVETLRADAGAPPISEHEMEALEALLAVRETVPYALEQMRDIAVDLPAILPALERLEARSAA
MKARGIAIDQLDFEAAYGRTSMEYYDGFVFGFYAERRPDLPPIATGGRYDALTRYLGQGDEIPAVGGVIR
PDLILALEGEAEA
>gi|99080346|ref|YP_612500.1| ATP phosphoribosyltransferase catalytic subunit [Ruegeria sp. TM1040]
MSIKLGVPSKGRLMEKTFDWFAKRGITLSRTGSDREYAGAVEGVEGVDLVLLSAGEIPRELAAGRIHLGV
TGTDLVHEKLPRWEQQVEELEPMGFGEADLILAVPQFWIDVDTLEDLDAVAAAFRRTHGHRLRIATKYHR
LIREFLADAGVADYQLIDSQGATEGTVKNETAEMVADITSTGETLRANHLKILSDGLVLRSQATLWRSRV
AKCTPEEKQTLQTLLTKIEG
>gi|99080347|ref|YP_612501.1| hypothetical protein TM1040_0506 [Ruegeria sp. TM1040]
MTTSKQTTLDTPMDKHINLVKLSVGSESVESLLDWQQSYARRWPDGLPRHITRMWPKRESEIVDGGSIYW
VIKGLIQCRQRIIRMDEVFGDDDIRRCAIVLDPEVHRTHTAPKRPFQGWRYLKPEDTPADLPEGRESEEP
LPAELSQALAEMGVI
>gi|99080348|ref|YP_612502.1| hypothetical protein TM1040_0507 [Ruegeria sp. TM1040]
MPKEEWGTKRVCPTTGKRFYDLNNNPIISPYTGEVVEIDTTKSRMIEADAEDAASLKAKQNTDSDDAVLD
DDDDAVDMDLGDDVLDDDDDEDNVSLDELADVASEDEES
>gi|99080349|ref|YP_612503.1| hypothetical protein TM1040_0508 [Ruegeria sp. TM1040]
MPELSLSGEPEVRVTLRRSAQARRMSLRISSLDGRVTLTLPKRVSEREGRAFLLEKEDWIRSHLARQPER
IDVGIGISLPIEGRTITIKAGAGRRVRHAEDTLVVPEPAPARRLERYLRELARDRLAAASDLYAERLGRR
YSSLTLRDTRSRWGSCSSAGGLMYSWRLILAPPDILHYVAAHEVAHLKEMNHSRAFWATVEDIHGDYRDQ
RHWLQTEGNALHRYRFEENVERD
>gi|99080350|ref|YP_612504.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MDKLLTGNRPTAENTGSAHDRVYRALRTRIMHGAIAPGASLTLRGIGKEYDVSMTPAREAVRRLVAEGAL
FLSSSGRVSTPELSNERIEELAALRALIEVELASRALPRAHMALIDRLQAINGTVAEMISKRDAVGYIRT
NLEFHRTLYLRAQAPAMLAMAETVWLQLGPTMRALYGRLGRTEPPQNHKLIIAALKAGDEPGLRLALRTD
VTQGLRLLAG
>gi|99080351|ref|YP_612505.1| Serine O-acetyltransferase [Ruegeria sp. TM1040]
MGANPLRQSLLQEVRDLFAQEPALRGLYGYDPDQVGTVPALFAAVLSSSSPDPKLRDLVRDLALKVFETG
SELVEVILDDLLATTARDEAESAAQVLHSAHGFQALMSYRLTRALWLDGRQTLALALKLQFTRVFSVEIW
PQAQIGRGVWVDHGLGLVIGQAAVIEDDVCLWHGVTLGSNFVDMGEARHPTLRRGVVVGAGATLLGPIEI
GAGATIAAGAVVTRDVPAGHVVAGPPASDRGVGRFAGFTPLQQLRGQDR
>gi|99080352|ref|YP_612506.1| hypothetical protein TM1040_0511 [Ruegeria sp. TM1040]
MTTLGIDHPLVCVRDLAAKRATYQSLGFLMKPPGMHPWGTSTALVIFRNQLLELVSIEDESLLDGYAAGS
FRFGRHVEAWLAEREGVCLSALNSMDAEADEAAVLARGGSCAGTVEFGRDVVRDDGTPDRTKTTLKIFPH
AGLPRLSMFACQQHRRDLIEFPDWMDHPNGAHGFASATILAAPSDQGRVRDWLSVLHGADAVRDTDWGFE
VATTNGRWRVVSRATAPALLGKLPDGLASDGAPSVISLDIRCHALSQLRPFVEAGEFVCQDVNGALVLTE
VARLGGILLSFHEIPKV
>gi|99080353|ref|YP_612507.1| peptidase M20D, amidohydrolase [Ruegeria sp. TM1040]
MFDTTHIEEAIALRHDLHRHPELGFEEHRTSEIIAGLLHGWGWRVHRGLAGTGVVAQMGQGEPVIGLRAD
IDALPMEEATGLAYASGTPGKMHACGHDGHTAMLLLAARKIAEEGVATGTVTLIFQPAEENDGGARVMIE
QGLFREFPVDQVYGIHNWPGLAPGRMVARDDKMMAAFAVFEIEVAGQGGHGAMPEQSDGVIAAAAAMAST
LQEIPARALSPLEPGVVSVTQIHSGSAWNVCPDRAVLRGTARWFDPAAGDTIEARLTQVANACAAAQGCS
ARIDYQRRYPATINSAVEAAAARAVAAEMGLETANVAPSMASEDFAFMLNEVSGAYIWLGAARDGENPGL
HSAKFDFNDAVLPVGAEFWVRLARRQLAT
>gi|99080354|ref|YP_612508.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MDALETKFLREFLAVAHEGSIRRAADRLNVVPSAISRKIAEAEARLGVTLFERSSKGVVLTEAGELLREH
AQHMRDEQTYLLDQIGHFRDGRSQIVRIATGEGFAADLMGKGLLGLTRAHPELRFIVDHAGTDEIQRKVI
EGESDIGIAYNPLITDATRSLAQARQSLCVIAPTHSPLAQRKSVTLAEVLEHPVAMLNAGYAIRHLVGQA
AADRGLALRVQAEMASIPLLIHYVCAGVGISFLPRFCATSQAERGDLAVLDIEESSLQQVSTHLMVRARR
RLPKSVALVARYLAENMQAFRD
>gi|99080355|ref|YP_612509.1| 6-phosphogluconate dehydrogenase, NAD-binding [Ruegeria sp. TM1040]
MVATQNKRAGVIGLGAMGLGMARSLLKAGFAVSGYDPAETARENAAAAGVWLTADTDAVFADCDVIVLSL
PTAQHVLAVVQAAQAAGHLAQTGAARVIVDTSTSEAATSRTLAAELSALGHGFLDAPVSGGPAGAASGQL
SVMLGGETQWLEAARPALEAMAAKILHVGPSGAGNVAKLVNNMLVANHMVTTLEALRLGEAAGVAAKEML
EVVNSATGRSAISEVHYPNWVLPRSFDSGFSAGLMRKDLRLARALAAEVSVATPMADRVAELWAETQSGL
SDSDDFMRMGDPQVDRLSAKEEQA
>gi|99080356|ref|YP_612510.1| aldehyde dehydrogenase [Ruegeria sp. TM1040]
MTKEMIDITGRVATLLRDLTGTSEVRSYVGGELVQGSGAELELTDPASGVVFARYRDAGPDVVARAAEAA
QVAQKIWYAKTASERGRILFEIGRQIRQHAAALSELEALSSGRPMRDTGGEPARMAEMFEYYAGWCDKIT
GDVIPVPSSHLNYTRQEPLGVVAQITPWNAPLFTCCWQVAPAICAGNAVMIKPSELTPLTSVVIGILCEK
AGAPKGLVNVIAGDGPGSGQAMIAHPETALVVFVGSAEAGSKIAAAAAKRLIPSVLELGGKSANIVFDDA
DIDRAVVGAQAAIFASCGQSCVAGSRLLVHRSVQTEVVEKLSAAAARIPVGDPMDPATQVGPVNNLRQWN
KIDTMVQAATRAGASVASGGGKPAALAASGGFFYAPTVLDAVTPQMEIANEEVFGPVVSVLPFDDEEEAI
QLANATPYGLAGAVWTRDVGRAHRVAGAVRAGTFWINSYKTINVMSPFGGFGRSGYGRSSGREALSAYTQ
TKSVWVETAENPAQGFGYAPG
>gi|99080357|ref|YP_612511.1| hypothetical protein TM1040_0516 [Ruegeria sp. TM1040]
MNIKHIVLDWRLHLSAVVITVVAEAIGVVKVPIGFGAILLLPLLYAFVLGLLINPNVVGAAKVWISDRNV
KAASPMIVIAIMPFIAKFGTIIGPSMETIIAAGPALILQELGNLATIVLAFPVAVLVLRMGRESIGACFS
VAREPNIAIIADKYGLKSQEGAGVMGVYVIGTLFGTFIFGILASILATTGMFSIEALAMACGIGSGSMMA
ACSGALASAVPEMKDQILALAGASNVLTYATGMYLCVFVALPVTEKLYDWLGSKETTAPQAGE
>gi|99080358|ref|YP_612512.1| hypothetical protein TM1040_0517 [Ruegeria sp. TM1040]
MSETQFFEDPTVEQKLGLGVHAAALIVVCVVVLVGNTVATDNSLPDGLVGLIVLWLISMVGLTLTEIVPF
KLPSVAWISLVGIIATLPWTPGSAWVLDKVAHVNFLTLATPCLAYAGIAIAKREIDIAKTSGWKIAVVAV
LVMTGTYVGSAVVAQMFL
>gi|99080359|ref|YP_612513.1| ribonucleotide-diphosphate reductase subunit beta [Ruegeria sp. TM1040]
MKGPCPQAAEIECMKDMTQARAVPKAINWNRLQDDKDLEIWNRLTVNFWLPEKVPLSNDIQSWSQLTPDE
QTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEEAVLSNISFMEAVHARSYSSVFSTLCQTTEVDEAF
RWSAENEHLQAKSRLILGEYDATASPLRKKIASVFLESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRD
EAIHGYYIGYKFQRGLERASEAERKELKDFAFGLLFDLYDIEARYTEQLYDGLGLTEDVKNFLHYNANKA
LQNLGFEALFPEETCRVNPAIMAALSPGSDENHDFFSGSGSSYVIGKAVATEDDDWDF
>gi|99080360|ref|YP_612514.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp. TM1040]
MLDASVTADLDYHALNAMLNLYDDEGNIQFDADRMAARQYFLQHVNQNTVFFHSLDEKLGYLVEKGYYEP
EVLDQYSRNFHRKIWDAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQRYLERYEDRVVMNALTLARGDEKL
AMKLMSEIIDGRFQPATPTFLNAGKKARGEFVSCFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNI
REHGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIK
TLSLGVVIPDITFQLAKKNEDMYLFSPHDVEKVYGQAFSEISVTEKYHEMVDNPQIRKKKINARAFFQTI
AEIQFESGYPYIMFEDTVNAANPIAGRIAMSNLCSEILQVNEPSKFNDDLSYEQMGTDISCNLGSMNIAR
AMDGGDLAGTVGTAIRALNAVSEMSSIDSVPSIRKGNEEGHAIGLGQMNLHGYLARERIHYGSAEGVDFT
NIYFCTVLYHAISASNALAKEKKSKFKGFEDSAYADGSFFEKYVEKDWLPETDRVKELFETAGVEIPTRK
DWEALRDKVMKHGLYNRNLQAVPPTGSISYINYATSSIHPITAKIEIRKEGKIGRVYYPAPYMTNDNLEY
YRDAYEIGPEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINRAQIYAWKKGIKTIYYIRLRQQALEGT
EVEGCVSCSL
>gi|99080361|ref|YP_612515.1| ribonucleotide reductase stimulatory protein [Ruegeria sp. TM1040]
MVGLVYYSSRSGNTARLMERLGLEALRLPQTEPSPEVDAPYVLVTPTFADGEGRGAVPKPVIKFLNNSRN
RALLRGVIAGGNRNFGDTFALAGDVIAKKCNVPVLYRFELAGTETDIARMRAGLARFWAAQEQQTCLTQA
>gi|99080362|ref|YP_612516.1| ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit [Ruegeria sp. TM1040]
MSITVYSKPACVQCTATTRALEAKGISFDLVDLTEDAAALEMVQGLGYRQAPVVVAGEEHWAGFRPDLIG
QLA
>gi|99080363|ref|YP_612517.1| glutathione-dependent formaldehyde-activating, GFA [Ruegeria sp. TM1040]
MSEVTASCLCGDIRVRASGSPIGVGLCHCMDCRKHHGAVFWAAAVYPAEAVEVFGQTQQYQGRHFCPRCG
SSVYSCSEGEVELHLGAMDQPNQFTPTYELWTDRREHWLTPLARAHQHSRNRGA
>gi|99080364|ref|YP_612518.1| bile acid:sodium symporter [Ruegeria sp. TM1040]
MSIFEKYLSLWVALAMTAGIALGSLAPGVMEAIAALEVARVNLVVAALIWAMVYPMMIGVNPRSLRDVAR
QPKGLAITLVVNWLIKPFTMAALGVLFFEVVFAPFLEPQDAQQYIAGLILLGAAPCTAMVFVWSQLTRGD
ESYTLLQVSVNDLIMVVAFAPIVAFLLGVTDIEVPWSTLILSAVLFVALPLMAGLWTRNRLAEEARITAF
LARIKPLSMLGLITTVVILFGLQGQVILDRPSVIAMIAVPILIQSYGIFFLAYGAAYALRVPHRIAAPCA
LIGTSNFFELAVAVAISLFGLHSGAALATVVGVLVEVPVMLTLVAFANRTRARFALTGADHQAS
>gi|99080365|ref|YP_612519.1| major facilitator transporter [Ruegeria sp. TM1040]
MTQSPAQNGLAAYMAVTAAYWAFMLTDGALRMLVLLHFHTLGFSPVQLAYLFILYEIAGMVTNLSAGWIA
ARFGLTTTLYAGLALQVVALLALTQLDPGWQIATSVAFVMGVQGLSGVAKDLAKMASKSAVKLLAPKEGD
GLFRWVAVLTGSKNAVKGLGFGLGAVLLALAGFTWATLGMALILAAILIAVLIAMPKGLPTGRKGAKFSE
VFSKSANINWLSAARVFLFGARDVWFVVGIPVYFYAVISDGTEASNRAAFFMIGSFMAVWIICYGAVQAA
APRILRASSRSEAELISAARHWASLLALVPAALTVAVVMSGAPAPWLTATLVIGLLLFGALFAVNSSLHS
YLILAFSKDERVTMDVGFYYMANAGGRLLGTLLSGLTYQLGGVAACLGTAALMIALSALAAGRLSAPTSE
RATA
>gi|99080366|ref|YP_612520.1| glyceraldehyde-3-phosphate dehydrogenase [Ruegeria sp. TM1040]
MTVYAVNGLGRMGKLALNPLLERGAQIAWINDAVGDAEMHAHLLEFDTVHGRWDAEFTCDAESITIDGTR
LPVLNKTNLADLPLDGVDVVIDCTGVFKTDAKLAPYFEAGVKKVVVSAPVKDGDAANIVMGVNHDIYDPS
RHRIVTAASCTTNCLAPVVKVLHEGIGIKHGSMTTIHDVTNTQTIVDRPAKDLRRARSALNSLIPTTTGS
ATAITLIYPELEGKLNGHAVRVPLLNASLTDCVFEVARDTTVEEVNAFFKEAANGALDGILGYELRPLVS
ADYTNDTRSSIVDAPSTMVVNGTQVKIYAWYDNEMGYAHRLVDVAMMVGESL
>gi|99080367|ref|YP_612521.1| ArsR family transcriptional regulator [Ruegeria sp. TM1040]
MEKEIPLRLSVLGHPQRLMVFRLLMRRYPDRVPAGEIATALDVKPSTLSSYLSALMQAGLVTQTREGTWL
NYQVDMTGMRETLDALFLDCCRGRPDLCVPASADMTSEVPAMPDSKYNVLFICTGNSARSIFAETILHSE
GAERFNVYSAGTRPYSELNPVALDVLRSKGHDVSRLRAKNVSEFIGDTAPKFDFVFTVCDRAANEECPAW
EGQPISGHWGMPDPVKAEGSEAEQSLAFQQAYGTLKNRIRAFAALPFTELDRISLQRAVDDIARTH
>gi|99080368|ref|YP_612522.1| peptidase S1 and S6, chymotrypsin/Hap [Ruegeria sp. TM1040]
MRRVLAIIAACLSLGLAETATAKDGRASSLPGWEAVGRLNIAGKYMCTGTLIAPNLVLTAAHCVYDARTG
QRVNPRGIRFEAGLDGRRVKAQRSVSKAVVHPAYEFRTGGNSQLGADLAVLRLSQPINRSDIRPFAMSAS
ANQGASVDVLSYSYHNATRASREQDCQVLSRRTRTLVMSCRVDFGASGAPVLEITPGQPPKIVSVISSKA
AMGRRPVSIGTALDRTLRAMMQNAI
>gi|99080369|ref|YP_612523.1| Type I secretion membrane fusion protein, HlyD [Ruegeria sp. TM1040]
MSIAADMDILEGTHGASRMIKLVALVLVMFVTWAGFASVDEIVRADGQVVSSSRAQIVQNLEGGILAELY
VRQGDTVQAGQILAKLQDTKFRAASDDLQDQIDALEIKQYRLEAEIEGAYEFAVPDALASRSPDILASER
ALLKARQSDFDSRRNSAEDILRQLKNELSNLQSLHEQKIVALLEVNEAKKKVSDAQAKFDEIGTQAELTL
AEEYSDTLRELTSLRQEQRLARDQLDRTVITSPMAGIVNSLAVTTIGGVVRPGDEILEIIPLGEELFVEA
RVKPEDIANVQRGQDVTIKLTAYDYTIYGSLRGKVDIVSADTFEDERDPRAAPFYRVTVRVDRSSLTARQ
KQIEIRPGMRATAELQTGSKTILSYLLKPLYKSREAFREP
>gi|99080370|ref|YP_612524.1| ABC transporter related [Ruegeria sp. TM1040]
MTDQDSHTPAPPASKPAKRGLKLSSITPNLTRKRRGDAANQTEGPVKISMVAPTANPKPANAEAKLDARL
SVPKFLQRKAKPAAAETPAAPQTQAPPAVDPIEIESFVAPRPAATKPDAAPATEPLATFEPEEDPQNAEA
ADQDQMRPEPAPQTARETEAASASMVAAEDTLGRLKARAQLLCRLAALRGCTLHAQDMLEHLQASGPAAL
RPEAMMSALITAGLKARVQSVKRPTPRHWPGIAIMQGGQPVLVLSQGKAGVTIYDSSCPDGRAEVPMQEF
MPYYAGQILTTRATLSQLTQRHTPQLDTSHWFWGEFPKYRRQMGEIMLGSLVANVLAVAVALFSLQVYDR
VVPHQSQATLWVLAVGALMAIGMEGILKLARARITDAAGRQIDMAVQHKLMRRVIGLKMDQSPLPPSGLF
AALRDFASVREFFTSSTLSTLADVPFIAVFLLLVASIGGPVVYVILIGAVLMLLPAYFIQKKMLAMTRLA
QGASTKSGRLLNEVVNEMETIKTQRGEERVLRLWDELNLLSSQASNGQRKLASALTYWSQGVQQATYICA
VILGTYMVFAGEFTVGTIIATGILTSRTLAPLTQFAGTLARWSNVRAALDALDMIADAPQEREKGRAYLR
RESIEGRFELREVVFRYDPDAAPTVDVPAVAVLPGQRVAILGVNGSGKSTLLKLLAGLYTPERGRVMLDG
TDMSQIEPRDLRRHIGYLGQEVRLFAGTLRDNLNLSYLPHEDERIMEALEFAGLAAFVRGHPRGLDLEIG
DGGAGLSIGQRQAVGWARLHLQNPSVVLLDEPTAALDQTLERTLVSRLDSWLGTRTAIVATHRMPILSLT
NRTLILQAGRMVVDGPRDEVLAHLNGGSKAS
>gi|99080371|ref|YP_612525.1| outer membrane efflux protein [Ruegeria sp. TM1040]
MALARRISAVALLCSLTACGLPLPGTLSGTQDSTAGRSNFAQAEDAPQSEVITALMQRQSLLQGGTAYDT
VASAALSASARASEAALISAKLRAEAKSTNWLPSLRPTVSLNDLGEMVASMLLEQVLFDNGRRKAERAFA
AADVEVAAVTLSADMNDRVKTALSLYVSGLRGDEKAAYAHRAIRTMRDFERVVVGRVNGGVSDRSDLNVV
QSKISGMQSSMATANDAARTARAELQAMTGQSFPASPQRLSLDLPPDGSNYLSVLKAKSEATRAIEQAKM
ERAGLLPQVSASGQVGSEGNGAGVLLNLAEPLGLGTPAALRAVEASKQAALRRIGEAEEDARREYSREMQ
RLASYRRQEREALALSRASRETYNLFKAQFEAGQRPVMDVIPIYEELVKREQAYIDAKYEVVMIQLALAA
SLGLLADGDKI
>gi|99080372|ref|YP_612526.1| hypothetical protein TM1040_0531 [Ruegeria sp. TM1040]
MSTVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLFDGTVVELEGF
YDPVATGSKNLFLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDDMVFLDVDRIEPVVAPLAAPL
LGGLGGLGAAAAGAAVLVGGGGGGGGDGDGAIVPTVDDADGTYDVPEGDPDGVTITGTGEAGSTVEVDIG
GVTGTTTVGEDGTWSVDFPTSDLPGDGVYETVVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVN
DIVNGDEQESGTIISGTGEAGATVTLVIEGHSQTTTVDENGNWTVTFSSDEIDTGEYETDIEITTTDPHG
NSTVSSDVLVVDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAGAAVEVVVEGVTRTTTADSNG
TWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVINEDERADGVT
ITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISATIQDSAGNTASDTDTVAYDT
EVTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVEINGTTHDAVVDSSGNWSLTVDGDDIGSFSQ
GGLVATVTATDPAGNVDTLMQPIDIDTLYETPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQL
DATETSSGISGVDKLDLDTPISDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFE
DGTDGANLVLTEALIKEMSDNSDTLTIRADELANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDA
GISLNGTPVI
>gi|99080373|ref|YP_612527.1| putative serine protein kinase, PrkA [Ruegeria sp. TM1040]
MNKVAELFAEAYGQTREQEMSLQDYLMACRDDPSMYANVAERMLKAIGDEELVDTSKDARLGPIFQNRTI
KRYSAFKDFYGMEDTVERIVGYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKRIVEDEPIYVLKAGD
QMSPIFESPLGLFDPVRMGKLLEEEYGIATHRLPGLMSPWAVQRLDEFEGDINKFTVVKLHPSRLRRICV
AKVEPGDENNQDISTLVGKVDIRQLEHFSQDNPDAYSFSGGLNRATQGVLEFVEMFKAPIKMLHPLLTAT
QEGNYMGTESFGAIPFNGLILAHSNESEWQTFKNNKNNEAFIDRVSIVKVPYCLRVSDEAQIYEKLIQNS
ELREAPCAPETLKILSRFSVLTRLKPHENSNLYSKMRVYDGESLKDTDPKAKTVQEYQDRAGVDEGMNGV
STRFAFKVLSSVFNHDTQEVAADPVHLMYVLEGMIKREQFPQETEQKYLEFIKTELAPRYEEFIGNEIQK
AYLESYTEYGQNVFDRYISYADAWIEEQDYKDPDTGQLYDREVLDAELSKIEKPVGIANPKDFRNEVVKF
ALRHRANTGSNPAWNSYEKLRDVIEKHMFSQVEELLPVISFGSKKDSKTESKHQEFVERMRAHGYTDRQV
RRLVEWYMRVNKAG
>gi|99080374|ref|YP_612528.1| hypothetical protein TM1040_0533 [Ruegeria sp. TM1040]
MHHFIDRRANPKGKSLGNRQRFLRRARENIKERVDRSVKEKSIGAGETVPENGEKITIPSKGLKEPRLYH
GPGGNRRHVLPGNKDFVVGDTLDRPQGGAGEGGRQASEDGGGMTSFPSP
>gi|99080375|ref|YP_612529.1| hypothetical protein TM1040_0534 [Ruegeria sp. TM1040]
MEKATVETETIGTRRAGLTTAGTPNNLNLVRTMRNSLGRRIALQRPSTQTQRDLEAQVAELEEIEARSPS
QDELLAELVAKLDGIKRKRRVVGYIDPLDLRYDTFVPEKIRNSRAVVFCLMDVSGSMQEREKDLAKRFFL
LLHLFLTRGYEHTEIVFVRHTHYAQEVDEETFFYARETGGTIVSTALEKMKEIIDERYPPDEWNIYGAQA
SDGENFGNDSVRCRKILTEQLLPMCQFYAYVEIVEESAQMLLDNTEAGEDLWQNYRQVKEACRHFEMQRV
SEPGHIYPIFREFFLPKVKG
>gi|99080376|ref|YP_612530.1| SpoVR family protein [Ruegeria sp. TM1040]
METAKTATAPLFDGPEWTFELLEKARDAIEKIALGDLGLDVYPNQIEIISAEQMLDAYSCVGLPLMYQHW
SFGKHFARDEALYRTGRQGLAYEIVINSNPCISYNMEENTMAMQTLVMAHAAFGHNHFFKNNYLFQQWTD
ADGIQDYLAFAKNYIAACEERYGFDAVEEILDAAHALQSQGVFRYGRPPKPTIEERRAMQQLREAYEKGQ
SALDIWTDATLGLKRDADAPDADLDHSERRKRMNLPQENILYFLEKHSPVLEPWQREILRIVRMLAQYFY
PQKQTKVMNEGCATFVHYYIINELYEQGLITQGAMMEMMHSHTNVVMQPEYDDPRYSGINPYALGFAMMQ
DIRRICEEPTEEDREWFPDIAGSKDWRGVLRNAWANYRDESFIQQYLSPHLIRKFKLFTLTDDESHPKLV
ISQIHNRAGYKAIRRDLAKQYDLAYIEPDIQVSDADLKGDRTLKLVHKVRDNVHLAEADRDEVLKHLRRL
WGYDVKLDAVADGPQ
>gi|99080377|ref|YP_612531.1| alcohol dehydrogenase GroES-like protein [Ruegeria sp. TM1040]
MIKTRAAVALEAGKPLEIMEVNLEGPKAGEVLVEIKATGLCHTDEFTRSGDDPEGIFPAILGHEGAGVVI
EVGEGVKSLKPGDHVIPLYTPECRECDYCLNPKTNLCQAIRSTQGQGLLPDGTTRFSLPDGTPIHHYMGC
STFANHTVVPEIALAKIREDAPFDKVCYIGCGVTTGIGAVINTAKVEIGSTAIVFGLGGIGLNVIQGLRL
AGADQIVGVDLNPGKVAMAEKFGMTDFVNPSEVEGDLVAHLVELTGGGADYTFDATGNVSVMRTALEAAH
KGWGESIIIGVAPAGAEISTRPFQLVTGRSWRGTAFGGASGRTDVPKIVDWYMDGKIEIDPMITHKLTLD
QINEGFDLMHEGKSIRAVVEF
>gi|99080378|ref|YP_612532.1| MerR family transcriptional regulator [Ruegeria sp. TM1040]
MNIGDVAAKSGLPAKTIRYYEDIGLICPNRSANGYRCFEERDLHKLAFLGRARALGFSIEDCRVLLGLYE
DDSRASADVKQLAQAHLCKIEAKISDLAAMRETLSELITCCSGDNRPDCPILKDLSGETDPIG
>gi|99080379|ref|YP_612533.1| SARP family transcriptional regulator [Ruegeria sp. TM1040]
MVVVLKVRQYGAFGVYRPDGEPIQLGAKHQALMALMVTAEEGVRTRAFLEHTLWSFAQPEQAKASLRTAL
STLRKHIGPTASAAFKANRERVTLDLSMIEVERDPARGEFMEGFELPHENAFSEWLSEMRSQASGTASVA
QEQPWAPRDRSRVILDELLPSIAVLPFAQRAPGGSTAPLGAILSEELSRQLSRSQAFSVTSYLASRQFSL
EDVRPAEVSSVAGVSYLVSGSVFVRVTILLRKLICMTRIGKKSFGRGSFVGAFRIC
>gi|99080380|ref|YP_612534.1| hypothetical protein TM1040_0539 [Ruegeria sp. TM1040]
MGQGGALRDATSQIGQTVVGEAVRLVSFRPLGNLANHTLLMAAIVMMQSKHPDQFEKSNEILDTLMEREM
HHPVVLTWAGIWHVMRVQKGLSGDRRKSTLMAENLANAALAQDPAFSLAHTLKGMIASYLTFDFDNAQYS
YDKALQDNPNEALALLLKGATRAMQNRPDEGVVLTEAARKLTPLGPQRYYFDSLAAAVSLAARDYNRAIE
LADRSLEENDSYPSTLRTKAIALQMSGRSDEARHVVESLMKVTPDFSLSRYMQEHAAGFTPSGPDWASAL
REAGVPE
>gi|99080381|ref|YP_612535.1| phosphoglycerate mutase [Ruegeria sp. TM1040]
MASFPALPARSFCLIRHGETTANRDEIIAGRLDVALTDLGRQQASLLKEISFPEPITLFCSPMDRAIKTA
SLGFHDTTAQVVPDLRERDWGVFEGRPLSELPPRDSTPPQGEGWRDMILRVHAAITWCCTQSQGALPVLV
CHSGVIRATRLLAQQTGVGTRPANATPILFEHHSGKHIEQWPDHSGANTARLR
>gi|99080382|ref|YP_612536.1| beta-lactamase-like [Ruegeria sp. TM1040]
MSTITVLSGIGDKGPAAMRLDTGRHRWLLDCGFGPEANATFDPDWLIGVDAVFVTHDHIDHIGGAAYAVE
AGLPIYATRRTAQALPPSAQVIALPEQGETHLDGICLTTGRNGHALGGVWMHFDLGAGLFYSGDWSEESQ
WFAFDEPPDAATAIIDCSYHLSNVPQSQRLQDLDALIDDLGGQILFPVPPSGRAGELALHLMHRFGPEAV
LLDPECCDSLRAALRSGGVAPRAQEIAPLLERGPLDEARFLICDTPNADGGAAWAYVRAWRESGRLGRDA
HVIFTGHMTAHARGIEAVEGGYFRRWNVHPPLSDQIAMIRRLGTKRYAPAFCTMPEDYLVEEGFDAQVFL
HETVEL
>gi|99080383|ref|YP_612537.1| ABC transporter related [Ruegeria sp. TM1040]
MAELTLSDITKHFGDAPALRSISTTVRDGEFLALLGPSGCGKSTLLRLLAGFETPSEGRISIGTREVANA
ERRLNLPPEERNIGFVFQSYALWPHMNVRRNVGYPLEIRRLPRAEQDARIDAALQATALEPYGARMPAEL
SGGQRQRVALARCLVSDPTAVLLDEPLANLDVALRASMQQVFSDFHQRTQATMVYVTHDQAEAMAMADRI
AVMNQGEIVQLDTPEALYARPRSRFVAEFVGEGAVVPLIGATHHDRGAEATLLGARYPIETDTQTPALAC
LRPENLQISDAGNIRARVERVTYLGGRYRLELTAASGDSLVTQSATRFALGEQIGLTLSAPWAFAA
>gi|99080384|ref|YP_612538.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSSLAAYSSSSRSEGRLLSLILVLAVVLTLAPVVRLFVEGLTAGDQLNFGFFAEVLQKPATLSALKHSLV
TAGLGTALSLLIGGCFAFLVALTDLRRKGALVFCLMIPMMIPPQITALSWTQIMGPSSVFLKTLGLAPPL
GAPQPLYSPAGIILLLGIQHTSIIFLTLRAGLRAIPQDVVEAARVSGAKGFRIWAQVVLPLTLPSLLAGV
AITFVTALGNFGIPAMLGIPAGYATLPTLIYQRLAGMGTTVLAEVAVLATLIGVVAIAGILLQRFCQSRQ
RVHLVGGSGRALSIPLGKARLPIEIALWSVIATILVLPMAGLLATSLVPAYGVPLRLDTLSFEGWHEALF
RQPVTQRAFVNSFGLSLGAAALLMALCLPLAWLMERHKTRLGRVFDSLLDLPYALPGVVLAIAMILLLIN
LPFTDVTLYGTIWIIFIAYLARFFAVMFRPVQSSLRQLDPAMDEAAQAVGAPLWRRLRDIILPLSAPSAA
AGAILVFLTAFNELTVSALLWSSGTETLGVVIFNLDDSGETVMASAVAMTIVFVVMILMAVIQATSRHLP
KGVVPWQS
>gi|99080385|ref|YP_612539.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKPLLSAALLAFTASASMAETLTLYTSQPNADAQMTVDAFMKANPEIEVEWVRDGTTKLMARLMAEIEAG
NPQPDVLLIADTATLEGMAQNGQLKAYQSPEAAAYDPALYSAEGYYHSTKLITTGIVYNTGAATQPTSWA
DLADPALKGQIAMPSPLYSGAALIHLATLTGDKDLGWDYYGDLASNDARAQGGNGGTFKAVASGEKPYGV
VVDFLAIRNKADGSPVEFVFPEEGVSYVTEPVAILESAKNVDAAQKFVDFVLSQQGQDLVLDMGYIPARN
DMGVPAGFPARDEIKLMSFDPAQALTDADANKAKFAELFGAE
>gi|99080386|ref|YP_612540.1| DeoR family transcriptional regulator [Ruegeria sp. TM1040]
MRRGELNERRDAIIRLLCAQDELSAQDLAARLNVSVQTIRTDLRELDEAALVQRRHGRVRLRQPSENIGY
APRMSVARSEKQQIAMAVKPMIEDGSRVALGTGTTVEACARQLAASHRDLFVATNNIHAVIALQGASGVS
VSLAGGAVRLRDLDFVGAASRAFFADYMVDIAIFSCGGLSLSGDVLDYNTDEIAAREAISTCATRRVLVV
DREKFGRALPCRKHMIWDYDVVVTGADFPREIMRKCQEAGCEVLRVATDERPLRA
>gi|99080387|ref|YP_612541.1| hypothetical protein TM1040_0546 [Ruegeria sp. TM1040]
MIPVSLKAATAAAFAISLSACGGNPRTDFNEFSSVSTRLDIDSDLSGLTRVAIAPDQEQSMNVFLTGYSW
WDNTPRGSAIIARPVIHRSAGGIGTYDDPITLAVGHKKTGGRSIMDYKPGTRFYIERLQKYAIVEDMCGD
GPRPQDGPCHTGHKGHDWIDIYVGGRRMDEASVDACMRHITGIQSVILNPRPGYPVTPGEIASTGCRTF
>gi|99080388|ref|YP_612542.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MKRRCFLKSLGAGAALIPVKSFATDFIGAVTPQTYPVITGIDATTSVPHLIAALDSFWERNIPVTCVVSP
FDGEGAPLSPQHPLARVLSGYLLGGSGIELAPLTADLATLSQHFQARRAHGALAALREMLSPVERTLGLP
IRVPTLACHDVARPASPMAVRSAGVFNILSLPRASAPIVSQTWENGVARLFGGRLVDLFQTGEAAPELPA
ATQNVDYLSATSFAQVDVDDLKALTDRYAQRLAQQEVDGTASLLPVSDLQLRDAYDFKRSICVYVQSSLN
APAPDAPSALTRLLDRMKLPYLQSPALAGPSASQLAIWVPTETPTHGGEPPPQPHPVTLTGVSATGAPLL
TTTRPLSAGIAVRLDVDPASHLGIGADGVLTLPRRDVDAPITPESLQAAFTGLNDVVVVLRSDDFSDDST
LTALEHALTSAKRTPVTEFTSLEKMTQGMIPNGPLPLRYRRVAATQPELTLRKLQLSEERRAELLEDAQV
AWRYLERFTHPETGLCPSTVDSSPGGRLHEAVTMWDVGSHINGLVAAKQIGLIDKQRFETAIRKILPNIA
GRVSDDRRLPQGWIRTDRTRWGNRNFDASDAGRLLASLDNLRRHSDFGDQLLKLVASYDLDQVIIDGEVH
SVTDGKLHSAYVSHSAHYVARAFRRWGHDVRSPYEVFEGRSEPDGQMALLEAVATIGPIGAEPLLLEALE
LGMSQESAYLADVLFSTQLEDFRETGRLICVSEGPIDTSPWFLYQGLQLDAETRTWAMDTVGQEPEYRTP
EFRDEYLAVSSKAAYLWSALQPHSYSDRLRAYVRENAKTDNGYSSSIFVRSGRATRNYTDLNTNSVILQA
IAHQLTTSG
>gi|99080389|ref|YP_612543.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MSLNESCNQLGVLVPDWLRLETTPEGPVVKIESEESRAPLVDYRSTSGHAPDLMPVLEVDTGSDKAGFLR
NLSTPETAQSVTSQVLAQLRPLYAQGTCISIPGLETADLDVLQPFFKTLTSSLRSEGHSPCLILSGTSTA
WQSRETTALFDKVILKLFLDPWVGTAPSPLATDAWFEKTAKAALQEIGKDKLVIALGTFAVEWVSGEPLP
KVLPYAAAMEKIAAAGAELRFSEKTSGSLASYRDPEGRLNKIWMQDVASLINQLVILQQLEIPNSAVWSL
GLEDPGIWSVLQNRDLSHDALSADLALVKLDSYVSYRGEGALLRLHRRQSPGIRQIGFDTETGRVVSQSY
DLLPRPYALERYGKPAGRKVVLTFDDGPHPVFSEQILDILQETQTPATFFVTGKSVMNAPEVLNRMIDEG
HEIGAHTFSHPRMDQVSKTRATLEYAMLDKVVAGAAGRQLTLYREPFQRSGGPVTADRVAALEIAWDRDM
QVVGMDVVPHDWAGWSGREIADFAIEEVERGAGNVILLHDGGEDRTASVEATRLIITELSAKGYEFTTVA
DLTGSTRAALMPVTEGGYQTFDRVSFSLVAWGQDAIVILFWLALGIGVVRSVAILLLAVLNWRGHRTISL
TTPKVAVIIPAHNEEKVIRSCIQSVRASDYKNLEIIVVDDGSSDNTLNEIFAFSHMREVRLISQPNQGKW
SALNRALMNTSAEIVVCIDADTQIEKSAIGHMVRHFDNPRIGAVAGKIIAGNKVNLLTRLQALEYTTAQN
VERKAFDLINGMLVVPGALGAWRVAALRKAGHFSDETMTEDTDLTIEVNRAGYRIAYEPLARGYTEVPER
IGQLLKQRLRWSFGMFQSAWKHKKAMFEGRSVGLISIPDMFIFGYLFPLLAPIADLFVAILLYQMVSGGW
DSGAVGAQNMQYLLAYLTLPALEFVIAAFALARDKDESMWSLLLFPVQRVLYRPILYYSVIRAILRAITG
RLFSWGAQKRLGRDYSLATSGT
>gi|99080390|ref|YP_612544.1| hypothetical protein TM1040_0549 [Ruegeria sp. TM1040]
MHYINISDLTDRSWRFLEPYDTEARMGWEMHHGLARNALERAITRPALGRYRACLEAVRAARRRADAVLV
SHLPNVTVATAALARGLRVTRPHVAFAFNYTQVPTGRRLALSRRVLRNIEEFTVFSRYEIGLYAELFDLP
SERFTYLPWAMEPPEVAEGMERPFDRPYFSAIGGEGRDYRVLAEAMAQAPELRLAIVARPAGIAGIAFPD
NVSVFTNLPAPVTWAIAQQSCGMAIALKSNHTPNGHVTMVGAQRLGIPLVVTDSLGVADYVDAETALMVA
PQEVTDMTRALRAVVEDPEAATQRAERAKERAATCSDPRVWLRYFAGLDLRLSGAR
>gi|99080391|ref|YP_612545.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MSDHPRNRTDESLIALRRILRATELYSRNLAQASGLTPAQLRVLQLLATNGGSATPKELAQTMGVAQATV
TALVDKIVSRGMATRMRSEADRRQTNVVLEPSGREAVKAAPDALQQRYVRAFEKLRDWEQAQLLASLERV
AAMLDADDMDAAPVLTTGDIKSADRPS
>gi|99080392|ref|YP_612546.1| L-2,4-diaminobutyric acid acetyltransferase [Ruegeria sp. TM1040]
MPKDILQTETDSPRTCQPRLRKPNATDGADIWELVRACEPLDRNSMYANLIQADHFRDTCVVAELDGDIV
GWISGHIIPGEDAFFVWQVAVGEAARGMGLGKKMLKALIARDDIRDASVLKTTITKDNAASWGLFRSFAR
DIGGELSDAPHFEREVHFDGAHDTEHMVTITLDNEAKILKRAA
>gi|99080393|ref|YP_612547.1| diaminobutyrate--2-oxoglutarate aminotransferase [Ruegeria sp. TM1040]
MPKDMATDTSIYTRRESNARSYCRSFTASFDTARGSELFTEDGTRYIDFLAGCSSLNYGHNDPDMKDALV
AHILKDGITHGLDFHTEAKEAFLHSFTDLILAPRGMDHKVMFTGPTGANAVEAAMKIARKVTGRTNVISF
TNGFHGVTMGALAATGNGYHRGGAGMDKAGVTRMPYDAYVDGVDSAALLDKMLSDPSGGIDAPAAIMLEP
VQGEGGLNAASAGFVKKVQEIAHKHGALLIIDDIQSGCGRTGTFFSFEDMGVQPDVVTMAKSVSGFGLPM
AMVLVRPQHDVFGPAEHNGTFRGNTHAFVTARVAIEKFWADDAFQTELARKSELVTSALQEVASHIPGAY
LKGRGLMQGVDVGSGELAGDICARAYELGLVVETSGPNDEVVKILAPLTTSEQLLCEGFAILSTAAREVA
AKTKIAAQ
>gi|99080394|ref|YP_612548.1| L-ectoine synthase [Ruegeria sp. TM1040]
MIVRDFNELKNTDRSVSDARWTSTRMLLADDGMGFSFHITVLEAGSEHQFHYKHHFESVYCMKGKGSITD
IATGETHEIKPGVMYALNLHDKHILRAEEELHMACCFNPPVTGTEVHREDGSYAPAEELA
>gi|99080395|ref|YP_612549.1| aspartate kinase [Ruegeria sp. TM1040]
MTHTVEKIGGTSMSRVNELVGTLFTGGRKPDDLYGRVFVVSAFGGITNLLLEHKKTGEPGVYARFADAES
DHGWHEALSRVGDEMRKAHEAVLENAGDVAQADAFVSERIEGARNCLIDLQRLCSYGHFRLAEHMLQIRE
LLSGLGEAHSAYVTALLLQRAGVNARFVDLSGWRDEGDVTLEERISSALNDVDPATEMPIVTGYAQCAEG
LMREFDRGYSEVTFSCLAALTGASEAIIHKEFHLSSADPKLVGEGVAQKLGHTNYDVADQMSNMGMEAIH
PKAAKTLRQADVPLRVTNAFEPEDPGTLIDDKPADQPAVEMITGLDIIALELFEQDMVGVKGYDAAILEV
LTRHDVRIVSKTSNANTITHYLDTSLTVLKRVEKDLAKIYPNADISARLLSMASAIGRDLKGLSVLTRGL
QAIADVGLASLGASQGPRNVDVQFIVEREDLKPVISALHKVLVEGRPAKQEKPIKAAA
>gi|99080396|ref|YP_612550.1| 3-carboxy-cis,cis-muconate cycloisomerase [Ruegeria sp. TM1040]
MNPLTSSNPYFAGLFADQEITALFEGAATADAFLAYEMALTRAAAEVGQIDIGLAQRALAAMVDFTPDVA
ELQSDLSADGMAVPGYVRQLKAHVGAECVAAVHPGATSQDLIDTAQALALRAANEIYISRLTTLIDALRD
LEETHGDNRLMGRTRMQAALPISAGHRISSWISPLVRHTSRLEILRPEVEALQFGGPVGDGQRSQPHAAA
MADHMGKALGLRAPERCWHTERDSLVTYAGWLSALTGSLGKFGQDVCLMVQQGVDALAQAGGGSSSAMAH
KQNPVTAEMLVTLSRYNAGQVALMHQASVHEQERSGAMWTLEWMVLPAMMTCTGAALRLATRQVQAITRI
GEPPTTR
>gi|99080397|ref|YP_612551.1| hypothetical protein TM1040_0556 [Ruegeria sp. TM1040]
MSTPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSDPEKFERLKEG
LEKHCPGMIIQFSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYENPPDLVDWLAGEMRTHQVTP
EVEAFDLSHILNAIALHKSGALYGKLYVQFVMGVKNAMPADKEVFDFYVDLVKRRAPDANWCAAGIGANQ
LVVNEWAIAAGGHTRAGLEDNVRLDRNTLAPSNAALIRRAAELCEKYERPVATWQQAREILDVPLRA
>gi|99080398|ref|YP_612552.1| protocatechuate 3,4-dioxygenase, alpha subunit [Ruegeria sp. TM1040]
MVQPLTHLKESPSQTAGPYVHIGCTPNFADIAGVYPEDLGQKMILGDVKGQRIRITGHVIDGTGTPLRDA
LVEIWQPDAAGLFNAPSETRGAADPNFTGFGRCPSDMTTGAFAFDTVKPGAVPFVDGRMQAPHVTFWIVA
RGINLGLHTRMYFPDEADANVADPILTRIEHQTRVKTLIAEAQGDGQYHFDIRLQGHNETVFFDI
>gi|99080399|ref|YP_612553.1| protocatechuate 3,4-dioxygenase, beta subunit [Ruegeria sp. TM1040]
MSNGYVNRDRRWHPPSITPDYKTSVARGPRHAPLSFPTTLVEETGPVFGHEILGPRDNDLILNFAKDGGM
AIGPRIIVHGQLRDEFGRGVPGALIEVWQANAGGRYRHKKESYLAPLDPNFGGCGRCITDAEGFYEFRTI
MPGPYPWPNTMNDWRPAHIHFSIFGASFAQRLITQMYFEGDPLIWRCPIVDTIPTREAIESLVAPLDMAR
TVPMDARAYKFDITLRGRRQTLFENRMEGL
>gi|99080400|ref|YP_612554.1| 4-carboxymuconolactone decarboxylase [Ruegeria sp. TM1040]
MSDCPSNDRYGAGMAVRRKILGDAHVDRAEAAKTAFDEPFQTLITETAWGNVWASDGVSDRERSMLTLAL
LAALGNFDEIPMHIRATARTGASKTDVLEAFQHVAVYAGVPRANHALKLAKETYAEMDREDQQS
>gi|99080401|ref|YP_612555.1| 3-oxoadipate enol-lactonase [Ruegeria sp. TM1040]
MRVARLQNAMLHWREDGSPDGPAVVFANSLGTDLRLWDAVIARLPQNLRLIRYDKRGHGLSSCPEGPYSI
DDLAEDALELLDYAGVSSCVFVGLSIGGMIGQTLAARAPDRISALVLSNTAAKMGERQMWLDRIQAIESG
GIAALSDAVMARWFAPAFLETDAHILWRHMLERTPEAGYIASCHAIANADLHALTQTLHQPTLGIAGRYD
GASPPALVEATIDLIENARFNVIEDSGHLPCVEAPDAYAGMLTDFIKELGHV
>gi|99080402|ref|YP_612556.1| 4-hydroxybenzoate 3-monooxygenase [Ruegeria sp. TM1040]
MRTQVVIVGGGPSGMLLGQLLHLNGIDTIVLERRTKEHVLSRIRAGILEQGLVELMHKAGVGARLERESF
RHHGTLISHNDEMFGINFERLIGKSVTLYGQTEVTRDLYEARESVGATTFFDVEDATIHDADTESPYVTF
QKDGKETRIDCDFIAGCDGFHGVSRRTIPASVRTEYEKVYPFGWLGILSETPPVNEELIYANSEDGFALC
SMRNANLSRYYVQCSLGDDVGDWTDTRFWDTLRRRLPSEVAEALVTGPSIEKSIAPLRSFVSEPMRWGRL
FLCGDAAHIVPPTGAKGLNTAASDVHYLYTGLIQYYEDKDSEGIDRYSEKALARVWKAERFSWWMTSLLH
RFPDQGPFDVKMQAAELAFLRDNKDAQRVLATNYVGLPY
>gi|99080403|ref|YP_612557.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MVNYQHARQVKIRHMQCLLEVVSCGSLKGAAERLYLTQPAISRTLKELEDILGSTLLLRSRAGVELTEAG
EVFAHFARMSLAALDHGLESLERTRGGALQQTVTIGALPSVAAGLLPRVAEGFQRLAPGAVLHLSDGPHG
ALIDLLRGGAVSMVIGRLGDPASMQGVSFTQVYTEEVVCVVRPGHPCLAAPELDDLSRWPVIFPPVSAAI
RPQVERWLISHGLSEPPNRIETVSGAFARVHARDTDAIWMISHGVVRNELSDGRLIRLPFDTSLTKGPVG
LMQRQDADPSPLESLFVKALHEAIEVLGYDAS
>gi|99080404|ref|YP_612558.1| RNA polymerase factor sigma-32 [Ruegeria sp. TM1040]
MANYANLPAPSPEGGLNRYLQEIRKFPLLEPEEEYMLAKRWVEEQDTEAAHKMVTSHLRLAAKIAMGYRG
YGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGTTSAQKKLFFNLR
KAKARIGALEDGDLRPEVVKKIATDLGVTEDEVISMNRRMSGGDASLNAMVGSDGDSTMQWQDWLEDEDA
DQAGDYEARDELQARRELLAEAMSVLNDREKDILTQRRLAEQAKTLEELSVQYDVSRERIRQIEVRAFEK
LQKKMRELAAGKGMLQSKL
>gi|99080405|ref|YP_612559.1| peptidase M19, renal dipeptidase [Ruegeria sp. TM1040]
MPAFARWIKRLVGLAICAIMAFFIFAPAALDRQRNPVAEHDSYPISDAARDLHQSLIIGDLHADPLLWKR
DLTKRNARGHVDIPRLIEGNVTLQVFTAVTKSPAGQNYDHNDADARDNITLLAIGQLWPLPTWTSLYERA
LHQAEKLHRFQERSEGRLRIIRTEADLDILLERKRAGHEVVGGLLGIEGAHPLEGDISKLQGLEEAGYRL
IALQHFFDNALGGSLHGAGDLGLSAFGRDVVSESVDRGLILDLAHSSPQVVRDVIAMTDVPLVLSHTGIH
KACPVKRNLPDALMRDIAATGGVIGIGYWADAVCDASPSGIARAIHSAIEVVGENHVALGSDFDGSVATT
FDSSELAALTQAMLDEGLSETQIRKVAGENMLRVLRARLD
>gi|99080406|ref|YP_612560.1| oxidoreductase-like [Ruegeria sp. TM1040]
MTQPIRWGILGAAKFAREHMGPAIHAANGAELAALATSSADKAAPFQSFAPGIAVHESYEALLADPLIDA
VYIPLPNHLHVEWALKAMQAGKHVLVEKPATLREEEFDQLIAARDAAGVLAAEAYMIVHHPQWQRARELV
HTGALGQVKHVSGKFSFDNRRDVDNIRNRPETGGGALRDIGVYVLGSARFVTGEEPQDISAQIEWENGVD
VLSNVQARFPSFLYTAYVSTRLQPFQEMVFHGDKGVLRLTAPFNPRVFGEARLELHQASHAAGSGRVIEE
RFPIADHYKLQVEAFGKSVRDGTPYACPLEFSRGTQRALDQIFACATTL
>gi|99080407|ref|YP_612561.1| hypothetical protein TM1040_0566 [Ruegeria sp. TM1040]
MAGGWAKDGAVSEQIEASISDELARMNARRAPAGESLTHCADCEEEIPEARRLAIPGVKLCIDCQEERDG
VQRQRGGINRRGSKDSQLK
>gi|99080408|ref|YP_612562.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MTSPRPQNTASPSLLPLSRSDHDLVRDIAVAPEQVVYCGTIAMAFASDEAGVDFYAIQQAGRFVGFFKID
VKYPRTYNFARQGDLGLRAFMIDHRVQGSGIGSGALRVLPSLLRRTYPKAQALVLTVNMRNHAALRTYLN
CGFRDTGDIHDGGIAGPQHVMRLPLFD
>gi|99080409|ref|YP_612563.1| hemolysin-type calcium-binding region [Ruegeria sp. TM1040]
MAILTSSDSIDAILFPSTFISGGYIFPTPVYRYDVTDSYISYTLDQTRGSTGYYNINPTVRIFGDNLSVD
SSGRASGTITAMEFRSSNRGEIARIEQISINASDFTDIIFARISGDNTSSTQFETLLAEALDVLEFGNRN
QDISDRGMLQYLSFIDLQGGNDEFHLARPKTDGTRTIDGGAGQDTLHLDDFGVPDSFVVNLKTGQIITDS
TSVNITGFEIIDGNPFVDRYIGSNSGDHIRAAGRADQINGFGGRDTLSGGWGDDRITGGRGKDRLHGDEG
NDFLRGDAGADLLVGGAGRDRLVGRAGQDTLIADDGRDRLIGGAGSDLFVFNLSGSGSKIRDFDISEGDH
IRLDTDGSYAFDTDSLKLTRSGFRINTIDSDSNVETLRVVLNDDARHDLSLDALWDVLTFG
>gi|99080410|ref|YP_612564.1| peptidase M3B, oligoendopeptidase-related clade 3 [Ruegeria sp. TM1040]
MFQLPFPVRDANASSGAGDLGKLPEWDLSDLYAGEDAAELSRDLDWLQGECAAFAADYEGKLAELDAEGL
LTCVHRNEKINNIAGRIMSYAGLRYYQLTTDADRAKFLSDVQEKVTVFTTPLVFFTLEINRIEDAKLDAL
FEANADLARYKPVFDRIRAMKPYQLSDELERFMHDLGIVGDAWEKLFDETIAGLTFEIEGEELGIEATLN
FLTEQDRSKREAAARELARVFADNIKIFARVHNTQAKEKEIIDRWRGMPSPQMGRHLSNDVEPEVVEALR
EAVVAAYPKLSHRYYELKRKWLGLDRMQVWDRNAPLPMETTRVVDWEEARATVMEAYEAFDPRMGELAQP
FFDKGWIDAGVKPGKAPGAFAHPTVTNVHPYVMLNYLGKPRDVMTLAHELGHGVHQVLAADQGEMLSSTP
LTLAETASVFGEMLTFRKMLEKAQTKEERKVLLAGKVEDMINTVVRQIAFYDFECKLHAARAEGELTPED
INALWMSVQAESLGESFDFMEGYETFWAYIPHFVHSPFYVYAYAFGDGLVNALYSVYAEGAEGFEDKYFD
MLKAGGSKHHKELLAPFGLDASDPKFWDKGLSMISGLIDELEAMEA
>gi|99080411|ref|YP_612565.1| alpha/beta hydrolase fold [Ruegeria sp. TM1040]
MAETAPAPYFSEIARGPDQVEAHWLTTQDGQRIRAGLWRSHGPSAGTILLFPGRTEYIEKYGPLAIDLTD
RGFDVLTVDWRGQGLADRSLSDGRLGHVAEFGAFQLDVAALVAHAEALNLPRPWYLLGHSMGGAIGLRAL
HEGLPVAACAFTAPMWAIRIPFALRPAARLLARFGTALGVSEKLVPTTTIEQYVQVTPFEGNTLTNDPEM
YAFLQMQMTQHPELALGGPTVQWLSQAMLECADLRARPSPDVPCVTFLGENEQIVATEAIHDRMARWPSG
KLEMIPDAQHEILMEIPQTRRQTCAILTAHFKKHV
>gi|99080412|ref|YP_612566.1| sterol-binding [Ruegeria sp. TM1040]
MKHHQGKTTMSDTLEQAAAKLNEKMDGGFDSSAKFEITGMGAIILDANGARVGDEDADVTMTADAETFEE
ILSGELNPTAAFMGGKLTIDGDMGVAMQLAQALA
>gi|99080413|ref|YP_612567.1| tetratricopeptide TPR_2 [Ruegeria sp. TM1040]
MGKTRTNLKAIVAAISLGVIPCLPSISMAQEDAHRIPQTEADLLERLRAADPADAARIARELQAEWSKSG
SAAMDLLLRRGREAMARQDWQAAIEHFTALTDHAPEFAEGWSERARAFFNAELFGPAVADLERALALNPN
DFNAIFGLGQVFEFFGDPERAYAAYERAEAIHPHHEEVTKALDRLSTKVEGQAL
>gi|99080414|ref|YP_612568.1| helicase-like [Ruegeria sp. TM1040]
MTTASRVVAVLGPTNTGKTHYAIDRMLGYRTGVMGFPLRLLAREVYDKIVKLRGPSVVALVTGEERIVPP
RAQYWICTVEAMPEGMGCDFLAIDEIQLCADPERGHVFTDRLLRSRGMKETLFLGADTMRGPIAALVPGV
EFVRRERMSELVYAGSKKISRMPPRTAIVGFSVDSVYAIAELIRRQKGGAAVVMGALSPRTRNAQVALYQ
NGEVDYLVATDAIGMGLNLDVDHVAFSATSKFDGRRMRPLAPNELAQIAGRAGRGMSHGSFGVTGDARPL
EEGVAQAIMDHRFTPLQKLNWRSADLRFGSIDALIHSLEASPNHEVLLKAREADDLMVLKSLAQDGAIRD
RATDAASVRLLWDVCRIPDFRGISHAEHASLLSGIYGYLHQGGVVPDDWFARQIRRIDRTEGDIDTLSKR
LAFIRTWTYVAQRNGWLRDESHWREETRTVEDRLSDALHARLTQRFVDRRTSVLLRRLKQKEALLAEVND
KGEVTVEGEFVGKLEGFRFSPDKTAQGAEAKALKSASLQALAPQYHLRADRFYNAPDTEIDFTDQGGLMW
GEHAVGKLVAGADALSPQIEVFVDETAGPDVAQKVERRLQHFISRKVQALFEPLIALQKDEALTGLARGF
AFRMVEALGILPRAGVAQEVKDLDQDARGALRKHGIRFGQFTIFMPALLKPAPTRLRLLLWSLANGLQEF
PEAPPPGLVTVPSMPEAPEGYDTMAGYRAAGQRMIRIDMLERLADLLRNEDSRGGFEAKPDMLSITGMTL
EQFADLMQGLGYRAEKGERAKVKAVDAVVTEGGTPAADQPVMDAAADAENTPAAAPAETTPDEAAADVLA
GTSEIVDEGVAPVAAGPAESSADEPIAETAEAETAVGAAADATVEEPEIEVFYTFTWGRNTRQGNAGRGQ
RRGEGRGPKADGAGRGKPRGGKPQGKPGGKKGGRPDRGGDKGSKTYSARPPKKEKQIDPDNPFAAALMGL
KQGD
>gi|99080415|ref|YP_612569.1| RNA-binding S4 [Ruegeria sp. TM1040]
MSDHADKMRVDKWLWHARFFKTRSLAAKQVGAGHVRVNGSKAAKPSQNVSIGDVLTFPQGHQVRVVRITS
LSERRGPATEAQTLYFDMTEKQDKPPANPKYEGKGRPDKKERRALGLTRVWDGH
>gi|99080416|ref|YP_612570.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTEPDMDQWVEFN
RKYAELWPVIVSKKDPMPGHEERDGEEGKLEKYFSEAPGEGG
>gi|99080417|ref|YP_612571.1| CarD family transcriptional regulator [Ruegeria sp. TM1040]
MTKSKKLEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVPTHKAIDIGMRSLSSP
DVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVRDLHRTDDQREQSYSERQLYEAALER
LTREVAAVSGGDEIAAAKQVDEVLTSRAA
>gi|99080418|ref|YP_612572.1| cobalamin-5'-phosphate synthase [Ruegeria sp. TM1040]
MRKNDFKPIDLLLALVLLTRLPLPHLSKEVFARQAAAVWAFPLVGAVVGVVSIFAGAVALIWCPPFVAAG
IALATQVLVSGAMHEDGLADMADGFWGGFDPKRRLEIMKDSHIGTYGVLALLFGLGLRWSILAALFEAGD
IWCLMALASLSRAAMPVMMASMPNARGRGLSQSVGRPAWPATLVGLLIALVVGFLSTGGSVIWAALVLGP
LLLGLRQLAMTKIGGQTGDVLGATQQLSEIALGLTLLALL
>gi|99080419|ref|YP_612573.1| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Ruegeria sp. TM1040]
MLPDLTTLSDFRNALAQAPGADADARAACEDRNGQLTKPPGALGQLEEIAIWYGSWRGTARPEVRAPQVI
VFAGNHGVTARGVSAFPAEVTVQMVANFKAGGAAINQLAQLADARMDVHALELDRPTADFTQGPAMSEED
LLAALRTGWNAVDPASDVLVVGEMGIGNTTSAAAICHALYGGEPGDWTGRGTGVDDEGLALKTAVIAEAV
ALHGSRDGLEVLRCLGGREIAAMAGAIAAARVLRIPVILDGFICCAAAASLARLHDQALDHAVAGHQSAE
GGHQALLARLGKAPLLSLGLRLGEGSGAALAIQVLKGALACHSGMATFAEAGVSDG
>gi|99080420|ref|YP_612574.1| potassium efflux system protein [Ruegeria sp. TM1040]
MDSFLSQASIYLAAAVIAVPIAARLGLGSVLGYLAAGIIIGPILGLVGAEAEELQHFAEFGVVMMLFLIG
LELDPRALWAMRHHLIGLGGLQITASTALLAGAAIFFGHSWQVGLAVGLALSLSSTAIVLQTLSEKGLTR
TGGGRATFSVLLTQDIAVIPILALLPLLATQHALSLSEDGSIVRAEEAHGAGHHSLSLVEGLPGWAVTLT
TIGAIAFVILAGVYLTRPVFRFIHASNLREMYTALALLIVVGISFLMTLVGLSPALGAFLAGVVLANSEF
RHELESDLEPFKGLLLGLFFITVGAGINYRLFLAEPGDVIGLALLVIFAKGAVLYFVGRAFGLRGRNHWL
FTLGLAQAGEFGFVLLAFSLQLNVVTADLSEKLLLVIALTMLITPLLFILYEILSKRMKDAQVEHTPDEI
DEEGTVIIAGIGRFGQIVHRLVNASGFKTVLLDSDMKAVQLMRRFGVKSFLGDPTRPELLKAAGISKAKV
LVVALDDQESATKLVTYARRNYPDIHIVARAYDRNHVFELYKAGANDIVREMFDSSLRAGRYVLENIGLS
EYEAAQAEQTFYAHDRHTIRELAGHWIPGTPASENPAYIKRARELEKDLETALLSLAEDHIKHRA
>gi|99080421|ref|YP_612575.1| hypothetical protein TM1040_0580 [Ruegeria sp. TM1040]
MSFVDRRIETRPSSGAAPFELNEVFFSRTDERGVILSCNYVFQRVAHYEWEEIIGAPHKLVRHADTPKGL
FYLFWEMLKSGKTVGAYVKNKSKDGLHYWVFATVVPCGDGYLSARIKPSSKLFAEIQTLYAKIVKAEQEG
DLSAEESAQIMLDWVHEKGFDDYQHFASHALAEELISRDLGLGRKVDPQISELREMLRNAEKLLDETHGL
VKDFEAMHTIPHNLRVIASRIEPSGGPVTVLSQNYGAMSREMSDWFERNVMGENTNFATVKHSVNSSLFI
AGMTRILMECDTQLQKERRDLGDVDMEEERRRLADLVKQQAGHAQKGMAEVDIEAVRIINACQVMHRHFL
GLSSTRVLCKIESARLPSSGETLSDIIDQLGAFQERISERLEHIAKLGEEIRSLEGE
>gi|99080422|ref|YP_612576.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MLDATDIKLLAQLQKNAQATAQELGDVLNLSASQAGRRRQRLEEDGFIQNYVARLDPSKLGLAVQCFVQV
HLHSHGPDNAASFARLVSNRPEITSAWTMTGEADYLLRVYCHDLQELNTLLHEIILPHPAVGRVHSQIVM
AQLKGDSPLPV
>gi|99080423|ref|YP_612577.1| 4-hydroxyphenylpyruvate dioxygenase [Ruegeria sp. TM1040]
MGPFPHDAPKSVISAENPAGTDGFEFVEFASPNPEELRELFAKMGYELVGRHKTKPGIELWQQGDITYIL
NAEKGSFAEKFVELHGPCAPSMGWRVVDAQKAFEHAVAKGAEPYEGDDKTMDVPAIKGIGGSLIYFIDQY
YDTSPYNEEFEWLKQSKPRGVGFYYLDHLTHNVFKGNMDKWFHFYGDLFNFKEIRFFDIQGKYTGLFSRA
LTSPCGRIRIPINEDRGETGQIVAYLKKYNGEGIQHIAVGARDIYDATDEISERGIQFMPAPPATYYDMS
HDRVQGHEEPLDRMKKHGILIDGEGVVDGGETRILLQIFSKTVIGPIFFEFIQRKGDDGFGEGNFKALFE
SIEQEQINNGEISAAE
>gi|99080424|ref|YP_612578.1| hypothetical protein TM1040_0583 [Ruegeria sp. TM1040]
MKPEFALSLSFDGITVLTRGAGGWYRLGSVSPDAKDLPEQLAKLRAEALALSEAPLHAKLVLPDSQIRYL
SLETGELSHDARISAARAALEGATPYKVDELAFDISVDGAITHVAAVALVTLDEAESFATEHGFAPVSFV
AAPEDAAYLGEPFFGTARSARHLTVEPDGIAVVEVPPPADPAVAKGDTAEEPDLYPESAADDDLAPRSDA
PIILPAAPPVLDASPEEAAPSTDDSTDTKLADTEDETAAQSAESTSAEEPEDIGPAVGFSSRRSRAKLEV
TSTKTTAPKAPSVTPKSAGTSEPAAPKAPSATTAKTGVALATSSVPAAPSLALPTPVLAHTTSAPPKPSP
SAIAQPVSGPAPEQLQTPQARPMRARSGRIGLLAAGLAAVSAIGAWAVVQELPNLWSDLKRADLIETEDP
VATPVLAAPDAALDANKELTTTAQGGLGLNLPSAPARTVATGAETGPAPGELAADTLTETDAAVLEALGA
PVVDEAAPLDGQDLIIASLPAPQDITSGTSETALAPIDDEAAVFDDSAEIDPEALADGVVPEDQPTDLLQ
EAPSELEQAAQYAATGIWQQVPDIADVPALISLDNVYVASIDNTELSQDAIALPAPDAFETDTPFGAVSS
PTEAGRQFDFDDRGLVVASPDGTLNPDGIMIYAGRPVKVPPPTPDRPTERVLAAAEEAERLALLQQVRPR
TRPNDLVEQAERAQLGGVVRSELLSKRPKLRPDSLKTEAQESQPATALAVASAPQPRARPTNFANIVDRA
QRRQQQAPDQSSSATVASAAVTPAIPSSASVARQATTQRALNLRRLNLIGVYGKPSDRRALVRLPSGRYV
KVKVGDRIDGGRIVAIGDSQLQYQKGSRNTVLNLPNG
>gi|99080425|ref|YP_612579.1| hypothetical protein TM1040_0584 [Ruegeria sp. TM1040]
MLKSKTAALMLASAVALTPLSLGAEELRQIHVTGEATSEVTPDRAHITLGVRVEAKDAGAAMEQVSQRMQ
EVTARLGDSGIAAQDMQTEQVSLHPVWNQVTRDGDQMREVTGFEASNLLRVTLQDLDAMGGVLDDVLAAG
ANEFRGLTFTYSEREAAENLLRTMAYENAYRKAQQLAEASGMALGPVRDIRDGGASGGAPMMAMEMARSS
DMPISPGALSLRHSVTVTFDISVPDGPN
>gi|99080426|ref|YP_612580.1| O-acetylhomoserine/O-acetylserine sulfhydrylase [Ruegeria sp. TM1040]
MSDSPTYGFDTLQIHAGARPDPATGARQTPIYQSTAYVFRDADHAAALFNLQEVGYIYSRLTNPTVAVLQ
ERLATLEGGVGAVCCSSGHAAQIMALFPLMGPGKNVVASTRLYGGTVTQFSQTIKRFGWSAKFVDFDDLD
ALREAIDDDTRAVFCESVANPGGYVTDIRAVADVADAAGLPLIVDNTSATPYLCQPISQGATLVVHSTTK
YLTGNGTVTGGCIVDSGKFDWSASDKFPSLSAPEPAYHGLKFHETFGNLAFTFHGIAIGLRDLGMTMNPQ
AAHYTLMGIETLSLRMQRHVENAVKVATWLENDPRVDYVTYAGLPSSPYAERAQRCYPKGTGGLFTVAIK
GGYDACVKLVDSLEIFSHVANLGDTRSLIIHSASTTHRQLTPEQQEAAGAGPNVVRVSIGIEDADDLIRD
LDQALAKACG
>gi|99080427|ref|YP_612581.1| hypothetical protein TM1040_0586 [Ruegeria sp. TM1040]
MPRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGGVLEALARLEA
EVIPFESRHFGQAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPFDFDRPSASLRREGTWPKPTL
YGPGYTEIWRSLYARFGLDFESSLDLSQPDEHWRRYLYFNAGYFYGACPHRFGTRFLEYALSIRDDLPPA
LIGQSLDPWLDQIALPLVIHSFGGARDSLPQGHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLK
KVLKGYEPIKRMVYQGRGQRVRALFDQHNLPRKEQAIRNRIKSAGLWMR
>gi|99080428|ref|YP_612582.1| hypothetical protein TM1040_0587 [Ruegeria sp. TM1040]
MQIIIHAGAHGTEEDRLMKTLLRNKEDLLARGTAVPGPAKYRTLLKDCMSAAQQGDPAPGARDFLWDAIL
EEETAERVILSNPHFFGSQRDALEGQRLYPEAEQRLLALQALFPEDELHLYMAIRSPVSFLSKLLEKAGA
GRRHAVLNETNPLDLRWSAMAARIRTAVPDIPITLWCYEDSPFLWAQIMREMGHLKPDSKVKGGMDLLAS
IMTREGMRLLRQYLHDRPEMTEVYKRKVFAAFLDKFALDEELEEELDIPDWSPEFIERIDQAYDADVAQL
QAIPGVTLLSP
>gi|99080429|ref|YP_612583.1| MaoC-like dehydratase [Ruegeria sp. TM1040]
MLDNFPRGTICIEDIEMGMTRYLRKQVTDRDIEMFAEVSTDRNPVHLDEDYAQDTMFHGRIAHGMLTAGL
ISAVIGEQLPGHGTIYMSQNLKFLAPVRPGDLVHAEVEVTDIQIDKRRVKLDCRCIVDGKKVLVGEAMVM
APSRKFD
>gi|99080430|ref|YP_612584.1| HAD family hydrolase [Ruegeria sp. TM1040]
MSQIISALSEVSDRYKALFVDLWGCVHNGITAYPDAVAALQAYRKSGGVVVLVTNSPKPRAGVAEQLSQF
GVPDDAYDTIATSGDSARAAMFTGAVGEKVYFMGEWERDAGFFEPMKVIHEPIEITRVPLKEAEGIVCCG
PFDTLADPEVNRADFLYAKQMGMKLLCANPDIIVDRGEVREWCAGALAKLYTEMGGESLYFGKPHPPIYD
LARRRLTEIGHDVSDRDILAIGDGPHTDISGGMGEGVDTLFITGGLAAKDTQTAHQPEPAALEAYLAQEQ
IAPTYSIGFLR
>gi|99080431|ref|YP_612585.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
MRYERTPHLIPTLQQALERRGYTSLTPVQEAVSNPELAGADLLVSAQTGSGKTVGFGLAIAPTILGEDGT
FERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASCVGGMDMRDERRALERGAHIVVATPGRLRDH
ITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDRQTLLFSATVSKPIAALAQTYQNDAQRIS
TINKSEQHSDISYLAHVVAPHDIENAIINVLRFHEAPNAIVFANTRAAVNRLLTRLSNRGFQVVALSGEL
SQSERAGALQAMRDGRARICVATDVAARGIDLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMV
TPRSVRKAERLLREAKLSAEWIDAPSADEVRGRDLERMLSDTVWTEEAPESQQETLAKLVESFSPEQLAA
GYLRLWSAARSAPEELTDVAAMDTRKKKEDRAPFGPSVWFAIDGGRDAGADPRRLLPMLCKAGGIDKTAI
GAIRIVGDKSYAEIAEDKVEGFMATLGGEMALDDGSALERLSEAPNLPERSKPPFRKGGGGGRGGFGGGK
PGGYKGERKGGGDFKGDRKPYRDRDGDADRTVKPRAAKPRPHGDKPAFDKPRGDRSEKGKFDKPRSDKPR
GDKPWGDKPRGDKPRGDKPHRDKPHGDKPRGDKPKFDKPRASKPKGPPPPKGKPNSKKNKARRSDASNTS
KRFTPPGRKA
>gi|99080432|ref|YP_612586.1| peptidase M48, Ste24p [Ruegeria sp. TM1040]
MMLQYFSRLSRPLLMTAGLLTLLSCGTTYELPDTGGVHSDAAARLYAEARQSPPPKTLSPTAAQARFARV
EPRIMRAGRETCLQLQTGVNCNVDIAIDREMKERNAYFTYQDGQPIIRISLPLIQDTGSDDEVAFVLAHE
YGHLIGRHVEKQQQQVLAGALIGGALAGIVGDSSDAIGLGMGVGASAGGIVYSQSYELESDTLGTRIAYA
AGYDPVEGARFFARSEAARGASGGYSIWGTHPPDRRRVATVLATKAQIEGQVGLKAAN
>gi|99080433|ref|YP_612587.1| putative manganese-dependent inorganic pyrophosphatase [Ruegeria sp. TM1040]
MTIQVFGHKSPDTDSTGSAIVWAWYLNEVKGEAATPVLLGEPNTEAAFMLKRWGFEQPAIIADVEADAPV
VIVDTNNPAELPASINSADIRAIIDHHKLVGGLETKGPIDITVRPLACTATIMYDLMGEDAARMPENIKG
AALTCILSDTLEFRSPTTTDHDRAVAEKLAADLGLNITDYAAEMFAAKSDVSAFSDAELIRMDSKEYEVD
GTKFRVSVLETTAPEIPLGRKDSLMETFNTVQTEDGVDQVLLFVVDILKEEATLLVPNDLVKTVAEKSFG
ASVDGDLVVLPGVMSRKKQIIPNLKV
>gi|99080434|ref|YP_612588.1| GumN [Ruegeria sp. TM1040]
MKYLRGRATLIERCGKALLELRARAFTVLIAAVLMASLTQAAAARCDGIDLRQHLTESARHKLDDALAKV
PFAVGNHWVAIKGDQRIDVIGTQHSGDARMFPIMRRLRPVIEQADAIFLEVTEPQMRAADTAQDSFARYF
LLPPGQRLDQMIPEAEWRLLMARLAPFGISSDAAARMQPWYLSDFLTGTDCRKRGLGSRRGLDDRIEHVA
RTAGIPTFGLESPEAGLAALASMPLSDQVRMLRFDLRSETRHQDLYVTLSDSFFEGRLTEGRILLLWMMY
RDLDVPRQEVHRLLASFDRVVLERRNRTWVKRLLARKEPRLVVAVGAAHLAGDTGVLNLLHRAGYALSPV
DDR
>gi|99080435|ref|YP_612589.1| GumN [Ruegeria sp. TM1040]
MLSRAQRSGDRRHALGHSGAVPATLRPFLSLICFCLVAVWMATPLRAACSGLDLRESAAPGMWAEIEAEI
ALTPFARGLSWVATRGDRRLHIIGTMHLNDPRHDALVAHMAPAIQAADAVLLEVNRADKARLERTLAETP
SLIFITEGPTLIDRLPPEEWDEIAERAGAAGIPPFMAAKMRPWFLSLSMSVPLCARAIEDVTDGLDMKLM
TLAERAGVETLSLEDPLGLFQLFDATPIEEQIKELRSYIAMAGVGADDFYTMVESYFDGEVQAYVLLQLK
QFLTSESDLSVAERQAQVDDLLEALLYQRNRDWIPVIEATAGNRLVIAVGAAHLPGEAGVLALLEAEGYQ
IEEALR
>gi|99080436|ref|YP_612590.1| hypothetical protein TM1040_0595 [Ruegeria sp. TM1040]
MAGMEREQDLYAPVKALLEAQGYAVKGEIGAADVVALRGEEPPVIVELKLRFSLALFHQAIERLKVSDTV
YVAVARPTGKTARRALKDNLALCRRLGLGLITVRADGRTEVHCDPGPYAPRKSPSKSVRLLREFSRINGD
PNAGGAIRGGLMTGYRQDALACVSYLQEHGPARGADIAKAKGVSRATHVLYTNHYGWFERVTKGVYGLTD
KGRVEPLDWFASAAVSATPRPK
>gi|99080437|ref|YP_612591.1| co-chaperonin GroES [Ruegeria sp. TM1040]
MALKPLHDRVLVRRTESEEKTAGGLIIPDSAKEKPSEGVVVACGEGARKDSGELIAMAVKEGDNILFGKW
SGTEVTVDGEELLMMKESDIMGVIV
>gi|99080438|ref|YP_612592.1| chaperonin GroEL [Ruegeria sp. TM1040]
MAAKDVKFDTDARNRMLKGVNTLADAVKVTLGPKGRNVVLEKSFGAPRITKDGVSVAKEIELEDKFENMG
AQMVKEVASRTNDEAGDGTTTATVLAQSIVREGLKQVAAGLNPMDLKRGIDLATDKVVEAIKAMAREVKD
SDEVAQVGTISANGEAEIGRQIADAMQKVGNDGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADK
MTAELEDCLILLHEKKLSSLQPMVPLLEQVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPG
FGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGTAKKIQITKDETTIVDGAGEKAEIEARVAQIR
AQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGVIVGGGVALV
QAGKSLEGLTGVNADQNAGIAIVRRALEAPLRQIAENAGVDGAVVAGKIRESEDKNFGFNAQTEEYGDMF
SFGVIDPAKVTRTALEDAASIAGLLITTEAMVADKPAKEGAAPAGGMPDMGGMGGMM
>gi|99080439|ref|YP_612593.1| hypothetical protein TM1040_0598 [Ruegeria sp. TM1040]
MLPDLCSVFFGGRSAASPQKKRGRGRVSNVTAHCVRTISRFWKFVTLCYDTLRVQPQTDGGTMMNIVIKL
RSGVVWTDQGRGSRAYGSPQTGHMAGTCWS
>gi|99080440|ref|YP_612594.1| hypothetical protein TM1040_0599 [Ruegeria sp. TM1040]
MGNTKMLDHPALPHMAPKPMLARLVVEDHFRGLSLMRRLALAVRLVLIARPARAGVIDMPLSAHLRADVG
LPARTDRVEPPEWYPPPLY
>gi|99080441|ref|YP_612595.1| hypothetical protein TM1040_0600 [Ruegeria sp. TM1040]
MRLIALTTLVMIAFAANSILGRWAIGPGHMDATGFGLLRLASGAAMLWALCALQGRRPREAWRRSLAGGA
SLTLYMVGFSMAYVALDAGLGALILFGVVQISMFGWSLLSRQPVSMLQIAGASIALAGLAYVVWPSAEIE
APLWAVLLMGAGGLGWGIYSLVGRAAQVPLAASAVNFLLATGLILPFVWLAGGGTVISVFGCVLAVVSGA
VTSGLGYALWYRVLPQLSAPVAATVQLSVPVIAILFGALILGEPVGARLMLGTFVVLGGIGLVILCPRPQ
PRPRKDAQGLSGSPPNA
>gi|99080442|ref|YP_612596.1| lipase, putative [Ruegeria sp. TM1040]
MIRYILAAALLSFAFEAGAQEGASSPASPEAPVTQPTKGCVILLHGLARTETSFLLMEEALVARDYEVVR
PGYPSTEHTVERLADAVLPRAFDACTQTPVHLVTHSMGGILVRYWLSHTRPVTLGRVVMLAPPNQGSELV
DEMGDWAVFDLLHGPAGQELGTGPNSLPKRLPAVDYPVGIVAGSQSLNPVFSALLPGPDDGKVSVASTAV
EGMKTQIILPVTHTYLMNNPRVIAQVVQFLETERFEPSLGWLDGVLGRDWDGGLNGVD
>gi|99080443|ref|YP_612597.1| amidohydrolase 3 [Ruegeria sp. TM1040]
MSEDGYVTLRLVGADVLRADGLERSGALTLADGLLQDASGAREVDLNGYRLLPGIVDLHGDGFERHVAPR
RGAMKQMGEGIRATEAELAANGITTGVLAQFLSWEGGLRGAEFAHQVFEGIREVRSQLVTDLIPQLRFEI
HLLDLYDTLPAQIADWEVPYVVFNDHLPHDRLAQGKKPPRLTGQALKAGRNPEKHFEMLLEMHARRDEVG
PALDRLCNLLRQNGICFGSHDDHSAQDREIWRARGAHISEFPETAEAAEAARSAGDHIILGSPNVVRGGS
HKGNASAVELISMGLCDALASDYHYPSPRRAALMLAKTGLLPLEQAWALVSSGPAKILGLHDRGVLTDGK
RADLVILDENNQVAATLSGGRVSYMSGAIAARFLS
>gi|99080444|ref|YP_612598.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Ruegeria sp. TM1040]
MTDLDQILEPGAVIGILGGGQLGRMLSVAASRLGFTTHIYEPAANPPAGHVADRVTTAAYEDEAALRAFA
QTVDVITYEFENIPTSALDILEDLKPIRPGREALRVSQDRLTEKTFLQELGLATAPFAEVDDAASLEVAL
EKVGTPSILKTRRFGYDGKGQMRIMHPEEAPEALAAMQGAPAVLEGFVPFSHEVSVIAARSLNGKVACYD
PGENVHLEGILSTTTVPANLTTGQSMDAVLMAGKILNALDYVGVLAVEIFVTAHGLVVNEIAPRVHNSGH
WTQEGCTIDQFEQHIRAITGWTIGNGARYADVVMENLIGEDVGRIADLARDPDCAIHLYGKAETKPGRKM
GHVNRVIHTEGREGY
>gi|99080445|ref|YP_612599.1| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Ruegeria sp. TM1040]
MADIKVGIIMGSQSDWPTMKEAANILDELGVAYETRIVSAHRTPDRLWDYGKTAAERGLHVIIAGAGGAA
HLPGMMASKTRVPVVGVPVQTRALSGVDSLYSIVQMPKGFPVATMAIGAAGAANAGLMAAGILATSDAAL
AERLDAWRDALAASIPEEPTDD
>gi|99080446|ref|YP_612600.1| phenazine biosynthesis PhzC/PhzF protein [Ruegeria sp. TM1040]
MQDFQFDWVDAFTDRPFGGNGCAVVHGGAHLPEAVACAYVRETSLVECTFTGPSEVADIKVRYFLASREI
PFAGHPTIATVAAMRDRGLISGQRITLETGAGIVPVDLEDDLIVMQQVAPQFGVTPDRALVAAAISLPET
AILGQPQLVSTGLPFCITVLKDLDSLRAARLDAVAMEPLGRALGADGSDVMEPFLVTLDGFTPTGDTFSR
LLMLPPSPPEDPFTGSATGAMAAYLWHHGLMDKAVFVAEQGHLMDRPGEAHVALVGDRSAPKGIRVGGRG
FVLMRGEVGLPTSLQT
>gi|99080447|ref|YP_612601.1| glutathione-dependent formaldehyde-activating, GFA [Ruegeria sp. TM1040]
MFLSIADLTGRYWEQEMIEGSCCCGNVQFALSAPPSMMGTCHCTRCRKLGANVMVFIRRDTLIWRRGREN
VAVYQPEAPYKYPRCFCKTCGTSLGEILSTEESFPISAQVLDGDLEIRNRFHEFVAEKPSWYEICDSAEQ
FEGHPVTS
>gi|99080448|ref|YP_612602.1| hypothetical protein TM1040_0607 [Ruegeria sp. TM1040]
MATKDTFERTEAMMGMTPEIWARHANPWSGWTRLTILPLFALAVWSRVWLGWGALVPVVLVLIWTWLNPR
IFPRPKRTDNWMSRGVQGEQIWLRHKTAPELSHHLAVVRQITLLSAAGALAYLVGLILLWPGLTLTGLCI
ASLGKLWMLDRMVWVLADVQHSGTLAHDDADQDVTG
>gi|99080449|ref|YP_612603.1| phosphate transporter [Ruegeria sp. TM1040]
MSQNDLEPRHLETLDRDLDRLSSLEQATAYVGRSNVGLGLAFMFILIVAAATGLMLGSADNTFIIVIAAA
FGAYMALNIGANDVANNMGPAVGANAMSMGFAIVVAAIFESAGALIAGGDVVSTIAKGIISPDTMATSSM
FIAAMLAALLASALWVNLATWIGAPVSTTHAVVGGVMGAGIAAAGFAAVNWSKMSAIAASWVISPLLGGL
IAAGFLWLIKSRIIYREDKISAARTWVPILVGIMAGAFASYLAVKGLKKLIKIDLSHSLMIGLVVALLVW
MLMIPVIRKQSKGLENRNKSLKVLFSIPLIVSAALLSFAHGANDVANAVGPLAAIVQASTSGDFTHAVSI
PFWVMIIGAFGISFGLFLFGPKLIRMVGSQITKLNPMRAYCVALSAAITVIVASWLGLPVSSTHIAIGGV
FGVGFFREWDTERRMRKSKAVKADAPNVGPEERRRRKLVRRSHFLTIIAAWVITVPAAATLSGVLFVLIN
RMVG
>gi|99080450|ref|YP_612604.1| hypothetical protein TM1040_0609 [Ruegeria sp. TM1040]
MQTPVEMAQAGGRTVYVKTVAVADLPKDVQASVPGRTQLYAVHDEAGEQLALVADRKMAFVLARQHDYAP
VAVH
>gi|99080451|ref|YP_612605.1| heat shock protein Hsp20 [Ruegeria sp. TM1040]
MSKLTLGSYPHMLGFEQLERLLERSAKSGNEGYPPYNIEQTSDHSYRITLAVAGFAEEDLAITVEDRQLV
IRGRQRDDSDGRIFLHRGIAARQFQRMFVLADGVEVGEAVMENGLLHVDLTRSRPETVVQTINIKKG
>gi|99080452|ref|YP_612606.1| hypothetical protein TM1040_0611 [Ruegeria sp. TM1040]
MNKRSDLAMANEDVLRVELEVFRREHRDLDEAIEALEEKGTADALTIRRLKKQKLVLKDKIALIEDRLLP
DIIA
>gi|99080453|ref|YP_612607.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein [Ruegeria sp. TM1040]
MPMSSNLAPIPELYVSYDSAQKLKVEAADLTSHDLTPRQICDLELLMNGGFNPLKGFLSEEDYNGVVENM
RLADGQLWPMPITLDVTEDFAASIEIGQDIALRDQEGVILATMTVTDRWEPNKSREAEKVFGADDEAHPA
VNYLHNTAGKIYLGGPVTGIQQPVHYDFRARRDTPNELRAYFRKLGWRKVVAFQTRNPLHRAHQELTFRA
AREAQANLLIHPVVGMTKPGDVDHFTRVRCYEAVLDKYPAATTSMSLLNLAMRMAGPREAVWHGIIRKNH
GCTHFIVGRDHAGPGKNSAGEDFYGPYDAQDLFRAHQEEIGIEMVDFKHMVYVQERAQYEPADEIADKDD
VTILNISGTELRRRLAEGLEIPEWFSFPEVVAELRKTKPPRAQQGFTVFFTGFSGSGKSTIANALMVKLM
EMGGRPVTLLDGDIVRKNLSSELGFSKEHRDLNIKRIGYVASEITKNGGIAICAPIAPYAATRRHVREEI
EQFGAFVEVHVATTIEECERRDRKGLYKLAREGKIKEFTGISDPYDVPQNPELRVETENVEVDNCAHQVL
LKLESMGLINGN
>gi|99080454|ref|YP_612608.1| adenylate/guanylate cyclase [Ruegeria sp. TM1040]
MFPQGVTEATCAPPLQCKKDSSLLAQALWQGNWIHRSRLVSGLVLFTFAFFHFLNVAAGLVSPALMEAMQ
EVREPFSKSPPGQVLLYGSLLVHAGLALWQVAMRRTLRMSFVQGLQLLLGVLIPLQLFQHIAHTNYAARV
QGYEDEMSSVVVMLWSGPEALHQYLLLLAVWIHGCVGLHMWLRLTRWWGTLTPYMIGLAVLIPALALAGL
VTEGRRMWAFFSNPEVAQQIIEDYNWPDAAGFAHLAMVSDYSISIFFGCLVLALGTYGVRRLIRRRRSVR
ITYERGPEVTADRGLTVLEISQMNGIAHPSLCGGKGRCTTCRVAILAGGDDLPPPTAAEARSLRAINAPE
NMRLACQITPTSALTVKRLYMAKGRHQVHATQGEEKTIAVLFLDIRGFTARSEGLLPYDVVFLLNRFFDA
IVPQITRAGGAVDKYMGDGLLALFETSDATSSAQAALTAAADIGSALERFNRLLVAEGEQPLRIGMGVHT
GTVVLGEIGAAGHAPRTLIGATVNAASRLEAKTKELGVEILISRAVFDTATLPQAETRFQTFELRGVDAP
VAALPLEHASRLSDLLADTPSENALR
>gi|99080455|ref|YP_612609.1| thioredoxin reductase [Ruegeria sp. TM1040]
MSDTRHTKVLIIGSGPAGYTAAVYASRAMLEPILVQGIEPGGQLTTTTEVENWPGHTEIQGPDLMVNMES
HARAMGTEIIGDIITSLDTSSRPFVAKGDSGTTYTADAVILATGARAKWLGLPSEEKFKGFGVSACATCD
GFFYRGQEIVVIGGGNTAVEEALFLTNFASKVTLIHRRDELRAEKILIDRLMKNEKIEPLWFHELDEVVG
TDAPLGVEAVRVKHTKTGEITEIPAKGVFVAIGHAPATELVKDVLETHNGGYVKVKPGTTETSIPGIFAA
GDLTDHKYRQAVTSAGMGCMAALDAERFLAEQE
>gi|99080456|ref|YP_612610.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MVTTRLDPIDRKILSELQADGRMTNVELAKRVGISAPPCLRRVRALEEAGLIRGYHAEVNDRELGFEVQV
FAMVGLESQAEAELSAFEEKCRSWPLVRECHMLNGEVDFILKCVAPDLSTFQSFLTSDLLTTPNVASVKT
SLVIRGAKDEPGVPFDVLEERLAREA
>gi|99080457|ref|YP_612611.1| hypothetical protein TM1040_0616 [Ruegeria sp. TM1040]
MTIPQSLERAAANLAKTKPLVRHQKALPDGSKPQLRRYEVASLLPNGNPTETRHIAPALPLFEQAFTAFT
RGSLIETDYGPVAIEDLYPGDRVLTRDGSYQTLIWKGMTTMVPGHQAATGGPLSMTSFMADSFGMEKPMS
CVVTGPAARLLRTPMHLRHAEGDSPLLTPVTEFIDGMNIVETTPPTPIDMYHLCLAKHAVIKVGGLEFET
YHPGPEALRLVSYPIKTLFLNMFPHADKISDFGPLAFDRARTTQA
>gi|99080458|ref|YP_612612.1| hypothetical protein TM1040_0617 [Ruegeria sp. TM1040]
MKPVRRCHRHAGFTDIVCLKRAKSHQADLATGASASEASLRRAIISLRSVPRVQGILTSCDEEAEMMDFT
NRDCAGILLLLSTSKGGRILSLKSFSTNIAV
>gi|99080459|ref|YP_612613.1| hypothetical protein TM1040_0618 [Ruegeria sp. TM1040]
MTLESVTSDLLSPVVHGFFTRKGGASSGVFQGLNCGVGSSDQREAVMLNRARVAEAMEAPTEALLGMHQV
HSADVAVIDALPKDPNAPRPKADALVTATPGLVLSVLTADCQPVLFADPEAAVIGAAHAGWRGTLDGVLE
ATIATMVSLGATRENISAVIGPTISQRAYEVGPEFFEAFMTEDEGNARFFAQGEGDRFLFDLPGLGLAKL
RAAGVKDSAWTRHCTYGDPARFFSYRRATHEKDADYGRLISCIRL
>gi|99080460|ref|YP_612614.1| hypothetical protein TM1040_0619 [Ruegeria sp. TM1040]
MSLMQSLRRRIELDGPMTVADYMSECLLHPDYGYYTTAPAIGAEGDFITAPEISQMFGELLGLVLVQSWL
DQGRPQPFTLAELGPGRGTLMADMLRATRAVPGFHEAMELLLIEASPRLRDLQRQALAPYAPRWVPSVED
LPQHPLFLVANEFFDALPIRQFQREGNQWRERRVGLAEDASGLTLGLGAPAPQPALAHRLEDTKDGDLVE
HCEVAAVVTEAIAQRIGDHGGVALLVDYGDWRSLGDTLQALRAHAPTDPLAEPGQADLTAHVDFEAICTA
ASATGCAHTRLTPQGVFLERLGITDRANALASGAAGEPLAQIIAAHRRLTHPEEMGNLFKVLGLYPAKFA
PPAGLEK
>gi|99080461|ref|YP_612615.1| prolipoprotein diacylglyceryl transferase [Ruegeria sp. TM1040]
MLAEMIQFPNLSPEIFSVTLFGTEFALRWYALAYIVGILIAWFLAVRAVKRPALWANEAPPMTPRQVEDL
MTWIILGVILGGRIGYVLFYQPSVYLQNPAQILRIWEGGMAFHGGLLGVVLASWFYARAHNINKLQIADL
VAHAVAPGLLLGRLANFVNAELWGRATDLPWGVAFPGSAAQKCGQALGEICARHPSQLYEAAMEGLILGA
LILWMVYRRQAFQAPGRILGVFLAGYGIARFIVEFFRQPDAQFISEGNPLGLAWHIGGFGLTQGQALSIP
MILIGLWFVLRAGKTDLHEVRA
>gi|99080462|ref|YP_612616.1| hypothetical protein TM1040_0621 [Ruegeria sp. TM1040]
MNREMAMQTRNKIMDDISQLMTNAMGVAQGAKDEAETAMKSMIDRWLADRDFVTREEFDAVRAMAQKARE
ENEALKARLDALETKAD
>gi|99080463|ref|YP_612617.1| hypothetical protein TM1040_0622 [Ruegeria sp. TM1040]
MALSEHELQDDLHPIDIVENLASHHDWDFDRIADDQIAMAVEGQWRTYSLTLAWSDYDETLRLVCSFEME
PPEAKIPQLYELINHMNDQCWAGAFSYWPEHKLMLYRYGLVLSGGQMATPEQVDAIVQAAVSNSERYYPA
IQLMVWGERPAKEAMQVAIAEAYGRA
>gi|99080464|ref|YP_612618.1| pyrroline-5-carboxylate reductase [Ruegeria sp. TM1040]
MDMNEIAARGLVLLGCGKMGSAMLKGWLEGGLPREAVYVMDPNPSDWLKGTGVHINATVPEQPAIVLVAV
KPQVMGAALPSAKSYGGGGTLFISVAAGTPISTFETMLGESTPIVRAMPNTPAAVGRGITALIGNAHVDE
AKMAQADALLQAVGQTVRLDDEGQMDAVTGVSGSGPAYVFHLIETLAAAGVAQGLPEPLAMQLAKATVAG
AGALAEAAEEDPSALRVNVTSPNGTTQAALEVLMDEETGFPPLLQRAVAAAAKRSEELSRG
>gi|99080465|ref|YP_612619.1| secretion chaperone CsaA [Ruegeria sp. TM1040]
MADISFDDFLKVDVRVGTVVRAEPYPEARRPAIKMWIDFGDEIGERKSSAQVTAHYAPESLIGKQVMAVV
NFPPRQIGKFMSEVLVLGLPDENGEIVLIGPDGDVSAQVPRGGRMH
>gi|99080466|ref|YP_612620.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [Ruegeria sp. TM1040]
MAASERRRLLITRPMTAAVEARARAELDVEIRQETTPLSPEEMRQSLGAFDLVMPTLGDAYSADVFAAVP
QPRCRLLANFGVGFNHIDAEAARAAGVEVTNTPGAVTDATADIALTLMLMTARRAGEGERLVRSGQWQGW
HPTQMLGLHLSGKRLGVVGLGRIGDAIARRAHFGFGMEISYLARSDKETGYPATRASNLIELAASVDMLV
VAVPGGAETRHLINADVLAALPSHAHLVNIARGEVVDEAALITALQAGQIAGAGLDVYEFEPKVPAELRA
MEQVTLLPHLGTATEEVRSAMGHMALDNCVAFLTGAPLPNPV
>gi|99080467|ref|YP_612621.1| thymidine kinase [Ruegeria sp. TM1040]
MAKLYFNYSTMNAGKSTVLLQASHNYRENNMQTYLLTARIDDRAGTGRIASRIGISAEADMFAPEDDLFG
KIETRLKDGPVAAIFVDEAQFLTHEQVWQLARVVDDLGVPVLAFGLRVDFQGNLFPGSASLLALADEMRE
VRTICHCGKKATMVVRQDATGQVLTEGDQVQIGGNESYISLCRRHWRAAMGDLPTAKTLG
>gi|99080468|ref|YP_612622.1| hypothetical protein TM1040_0627 [Ruegeria sp. TM1040]
MADIGTYLKKHTEALVKDVGIEAACQITGKSKATLGRYYSENAEHADRFIPVDAVAKLEGAASFPHVTSA
LADLKNITLSYSSGTEASVSRPGGVNTDVIALSRRFAQLMSEYQDAIADGIITVNEAKRLLKETVLLQQV
LLDMKLHLEEESG
>gi|99080469|ref|YP_612623.1| 3-oxoacyl-(acyl carrier protein) synthase III [Ruegeria sp. TM1040]
MYTAAITGTGVYTPSERITNAELVKAFNAYVDLQNEKHADEIASGAREPLQYSSEEFILKASGIESRFVM
DKSGVLDPEVMHPLLRQRSDDEPGIMAEMAVDAARQALAQAGKSAEDVDLVICAASNMERAYPAVAIEIQ
QLLGIRGFAFDMNVACSSATFGIQTAADMIRSGSIRAALVVNPEICSGHLEWRDRDCHFIFGDVATATLI
ERSEDATSAHFEILSTRCATEFSNNIRNNNGYLRRSRPDGVADRRDMQFMQNGRKVFKEVLPMVSQHITD
HMTAEGVGAADLKRLWLHQANKTMNDFIGKKVLGRTPEAGEQPNILQDYANTSSAGSIIAFSKFSDDLEA
GDTGLICSFGAGYSVGSVLVRRHG
>gi|99080470|ref|YP_612624.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MTVDHSDIWKLYTPEVQAMMGVFALHWQLEQRLNDVCHEGQLGRSEHQLLLILAQPRRMGELARLTHKTP
SAMTAAAAVLEQSNLIRRVRDPGDGRAWLLELTEEGRRRRAQLVDAASGIFYETSGLTREEAEILARLAQ
KIHNKAVQSGAVAPCEGDQT
>gi|99080471|ref|YP_612625.1| secretion protein HlyD [Ruegeria sp. TM1040]
MKMTSIRAVMLGAILATPMAAGVAAQAQDATPEQVLLKPVKLMTANGGSAPLERSFFGQVAAKETVDLAF
QVGGQVLKLPITEGDEIPKGGLIAQLDLETFQLQLEQAVLNKQQADRTKERNARLAGTVSQVAIEDAETA
AGLAEVALRTAQTNLDHATLYAPFDALVARREVAQFSTVSAGTPIARLHDMSELHVEIDVPELLFQKANE
SDAFEIVASFPGSSKEYPLQIVEYVAEASAVGQTYRVTLSMEPPEDRHILPGASTTVSVRVSTGLHRIAL
PVTAIVTTPEGKTGVMVFTPTGADAGSVTWTEVEIAPNQFGTFDVLSGVEDGDEVVLTGGAALKDGQAVR
RFVGFSN
>gi|99080472|ref|YP_612626.1| acriflavin resistance protein [Ruegeria sp. TM1040]
MDIARGSIQRPLYTWLIMLFALFGGIWGFLSLGRLEDPAFTIKQAVIQTTYAGASAEQVALEVSEPLESA
IQKMEEVKEITSMNRPGVSIIEVEMRDTYDGSELPQIWTKLRAKVRDAARGLPDGVSEPLVNDSFGDVFG
IFYAVTAEGFSDREKYELSTFLRRELLTVDGVADVDISGLRKETIYVEPDMPIATNLGVSVNAIANAVAT
SNSVTPAGEIKAGPMNTILQTPEGSDSVSEIAGLTVGVGGETINIIDIANVWRGREIDPSLMIRFDGVEA
FTLGVSGIANENIVDVGHRVDAKLAELDSDIPFGVELHPIYQQHIVVEQASNDFLVNLAMSVAIVIVVLA
LFMGWRAAIVVGTTLLLTVVGTLFFMALFSIEMERISLGALIIAMGMLVDNAIVVAEGMQISMQKGRSSR
EAAQEAASKTQIPLLGATVIGIMAFAGIGLSPDATGEFMFSLFAVIGISLLLSWILALTVTPLLGHYFFK
RGSGDDQDSYNGLLFRSYGALLRGALKARWLVVVGLIGVTVMCFMGFGLIKQQFFPNSNTPLFYVHYKLP
QGTAIEATSAHMAEMESWLAARDEVVSTATFVGQGATRFLLTYAGQKANPSYGHLIIRTENLEQIPGLQA
DLEAWGKAHFPEGEFRTERLVFGPGGGAPVEVRFSGPDPAVLRRLANEAKELLETESDLTRDVRHNWREQ
ELVLKPVYATDRAQTAGVTREAISSALQFSTNGVTTGVFRERERLIPIVMRQPQEDPYNVMNQVVFSETS
GSWIPLEQMIDGISYEVQNTLVHRRDRVYTITVGADVLPDVTAATAFGEVQAAIEAIEVPVGYKMEWGGE
HENSSEANASLGKQLPLSLLIMVLISVLLFNAIRQPIIIWLLVPMSVNGVVIGLLGTGLPFTFTALLGLL
SLSGMLIKNGIVLVEEIDIVRREEGLPLRESIVKASVSRLRPVMLAAITTILGMAPLMSDAFFVSMAVTI
MGGLAFATVLTLVAAPVFYLIFFKGVERQEQKAAAA
>gi|99080473|ref|YP_612627.1| carbamoyl phosphate synthase large subunit [Ruegeria sp. TM1040]
MPKRTDIKSIMIIGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPIT
PEVVAKIIEKERPDALLPTMGGQTGLNTSLALEEMGVLEKFNVEMIGAKREAIEMAEDRKLFREAMDRLG
LENPRATIVTAPKKDNGNADLEAGVALALEALEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHYCRSGMD
ASPVNQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALTLTDKEYQMMRTA
SIAVLREIGVETGGSNVQWAVNPADGRMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELDN
DITKVTPASFEPTIDYVVTKIPKFAFEKFPGSEPYLTTAMKSVGEAMAIGRTIHESMQKALASMESGLTG
FDEVEIPGVQAGLWESVGADDKAAVIKAISQQTPDRLRTIAQAMRHGLSDDEIQGVTKFDPWFLARIREI
IDAEREIRKNGLPMREDKLRALKMLGFSDARLGLLTGRDEDNVRRARHNLGVKAVFKRIDTCAAEFEAQT
PYMYSTYESPMMGEVECEARPSDRKKVVILGGGPNRIGQGIEFDYCCCHACFALTDAGYETIMVNCNPET
VSTDYDTSDRLYFEPLTMEHVMEILRVEQENGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAIDL
AEDRERFQALVNELGLKQPKNGIASTGEQALKIAEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYINEA
VVVSGDSPVLLDSYLSGAVELDVDAICDGKDVHVAGIMQHIEEAGVHSGDSACSLPPYSLDKEVIERIKE
QSFALAKALNVVGLMNVQFAIKDNEIYLIEVNPRASRTVPFVAKATDSAIASIAARVMAGEPLSNFPQRA
PYEPDAGYDVNTPMADPMTLADPDMPWFSVKEAVLPFARFPGVDTILGPEMRSTGEVMGWDRSFARAFLK
AQMGAGMVLPSKGRAFISIKDEDKTEVMLDTARILIAQGFDLVATRGTQGWLAGHGVECAVVNKVYEGRP
HVVDMLKDGEIQLVLNTTEGNQAVEDSKPMRSVALYDKIPYFTTAAGAHAAARAIQAQAEGEVEVKSLQG
>gi|99080474|ref|YP_612628.1| aminodeoxychorismate synthase [Ruegeria sp. TM1040]
MASKPLYAGQGRHSLLTETLPVEIRFDNGPSKGAALFEDPVDLIRAQDPDEVQGALAALDRARAEGHWVA
GYASYELGYALEPRLAHLLNGRGHRRLPLLQFGVFRAPVAADVPLWAGDAGVGETTARWDAARYTEAFDR
VKSYIGAGDIYQANLTFPIDAQVWGGAEALYAALAARQPVGHGALVRQDGLPTILSRSPELFFRTSSDGV
IETRPMKGTQPRSLDPREDSRRRDFLRSDEKNRAENLMIVDLLRNDISRVSETGSVHVPELFAVESYATV
HQMVSLVRARLKAGCGLADIFAALYPCGSITGAPKIRAMEILAELEPGARDIYCGTIGWAAPDGRSEFNV
SIRTMMLEGDAATFNVGGGLVWDSTSASEYEEALWKARFAQVTTPISA
>gi|99080475|ref|YP_612629.1| hypothetical protein TM1040_0634 [Ruegeria sp. TM1040]
MIETFGFAPGQGVARLDLHLARLTRSAEAFGIPFRRAKALAMVEDLAATTPLRCRMTLAADGFLALTTAE
MPAAANLWRVGIAQERLASDEPLLRHKTTRREIYDRARARLPAGIDEVIFFNERDEICEGTITNLVLTRE
DGTRLTPPVSSGCLPGVYRQSLLDAGSLKEAVLTMADLQRAAALHLTNALRGEIPATLFEI
>gi|99080476|ref|YP_612630.1| aspartyl-tRNA synthetase [Ruegeria sp. TM1040]
MHAFRSHTCAELNKSHVGETVRLSGWVHRVRDHGGLLFIDLRDHYGVTQVMADPDSPVFAEIEKVRSEWC
IRIDGEVKARDESLVNAKIPTGEIEVFIRDIEVLGKSEELPLMVFGEQEYPEETRLRYRYLDLRREKMQR
NMVLRSNMIRSIRNRMWDQGFNEYQTPIITASSPEGARDFLVPSRLHPGKFYALPQAPQQFKQLMMVSGF
DKYFQIAPCFRDEDPRADRSPTDFYQLDMEMSFVTQQDVFDTIAPVIAGVFEEFGQGRKVDAPNEWPQIS
YKDAALWYGSDKPDLRNPIKMQVVSEHFRGSGFAIFAKLLEQEGTEIRAIPAPTGGSRKFCDRMNAFAQK
EGLPGMGYIFWREGADGMEAAGPLAKNIGPERTEAIRQQLGLGVGDAAFFLGGKPKTFEAVAGRARNVIG
EELNLTDKDRFAFAWIVDFPIYEKDEETGKIDFEHNPFSMPQGGMDALNGDPLDVRGNQYDLACNGYELV
SGAIRNHKPEIMFKAFEIAGYGKEEVEKRFGGMVNAFQYGAPPHGGCAAGIDRMVMLLADEANIREVIMF
PMNQRAEDLMMAAPSEPMSEQLMELGLRVIPQDD
>gi|99080477|ref|YP_612631.1| response regulator receiver protein [Ruegeria sp. TM1040]
MDDSDLFSSAARLGSGRRPLLGLTILVVEDSRYACEAMRLLCLRSGARIRRADSLKSARRHLQVYRPSVV
IIDLGLPDGSGAELIEALSTASPRVAVILGISGDENAEAAAMAAGADGFLPKPIVSLAAFQNAILSNMPP
ERQPIGPRPMTDESVEPDMLAFRDDMAHAAEVLDEGKDEQTLDYLAQFLGGVARSVGDAPLETAATRLQE
TRKSGGPLAVETAMIADLVQERLQRKIAI
>gi|99080478|ref|YP_612632.1| methylmalonyl-CoA epimerase [Ruegeria sp. TM1040]
MIGRLNHVAIAVPDLEAAMAQYRDTLGANVGAPQDEPDHGVTVVFIELPNTKIELLYPLGEGSPIQGFLE
KNPAGGIHHICYEVDDILAARDRLKAQGARVLGTGEPKIGAHGKPVLFLHPKDFNGCLVELEEV
>gi|99080479|ref|YP_612633.1| hypothetical protein TM1040_0638 [Ruegeria sp. TM1040]
MGITSGLVLYAVIWFMTFLVVIPIRLETQGDTGKIVPGTHAGAPERHYLKQKAWITTGAAAVIWAIVAGI
ILSGMITVNDFDWFDRLPDRP
>gi|99080480|ref|YP_612634.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MPRIDISQISGRVLRVFLTVYDEKSVSRAADVLESSQSTISHNIEKLRGLLGDALFVQSGRGIVPSARAD
VLAPKVRRILIEMEGLADQGIYDPITDPDPFVIALSSSILDGELETIYDALRLSLPQKHLMFRDLGKLSE
IEPLLETRQADVVLTLRPRSYPNTLRHMALTQDSFRVFYDPNVRGPVDSVEDFCGAPHATVSFGQGSKSL
LQTELEALAIHRRVTLGVPNLWTLIRLMQGTDMIASLPSRSSRHTTGTLASSPFPVELPPLQFDLVWHRR
FADSARLQWLLMTIETALAQQAQDHPNDVGLRAHSFE
>gi|99080481|ref|YP_612635.1| hypothetical protein TM1040_0640 [Ruegeria sp. TM1040]
MTKITIQKATGRWVVRSGGAILGETENALELIEGDLAPVIYFPREDIAMAFLDKTDKTSHCPHKGDATYY
SIVNRSSTDENAVWSYENPIDAVSEIKGHLAFMPLASVKVEQL
>gi|99080482|ref|YP_612636.1| peptidase M24 [Ruegeria sp. TM1040]
MFQNFDVTARPEQGPARLAALRAEMERDKIDGFLVPRADAHQGEYVAPRDERLAWLTGFTGSAGFCAVLP
HIAGVFIDGRYRTQVKGQVADVYTPVPWPDVTLGDWLVEQLPEGGIVAYDPWLHSLQEIRDLTERLVSSD
ISLVESDNLVDRIWPDQPAPPMQPARAHSEDYAGESAEKKAQRLAEGLRKSGQSAAVITLPDSIMWLLNI
RGSDIPRNPVAHAFAILHDDARVDLFMAAEKLSELVLGAHVTLHAPDRFLEATAGLNGQVAVDARSLPQA
VARVLGDRLAAVGDPCALPKARKNAAEIAGSAAAHLRDGAAVVETLAWLDTQEPGTITEIDVVKTLEGFR
AADPALRDISFETIAGTGANGAIMHYRVTHDTNATLQEGHLLVLDSGGQYLDGTTDITRTIAIGSPGREE
AEAFTRVLQGMIAVSRLRWPEGRSGRELEAIGRLPLWMAGQDFNHGLGHGVGAFLSVHEGPQGLSRINTV
PLEPGMILSNEPGYYREGAFGIRIENLVVVEEAPALDTADPDRKMLAWRTLTFAPIDRRLVVPEMLSSGE
REWLNSYHAEVNRTIAPRVSAAAAEWLNAACAPL
>gi|99080483|ref|YP_612637.1| cobalt chelatase, CobT subunit [Ruegeria sp. TM1040]
MSKPNDNPADPFKKALAEATKVMADDTELTVNYSVDPAGMSGDTMRLPQVSRRMTREEVLLARGTADALA
LRRRYHDESVASRYAPSGDMARELYDAMESARCEAMGARDMPGTASNIDVKIQNEALRRGYDQVTSASEA
PLAVSAGYLIRHLATGRPMPEAAANVMELWRGFIEAQAGETLENLDETLSDQAAFAKFARRVISDLGYGD
QLGDDPDDLDDEMNDESEETAEEEEQPDSSGQDDSDEEEADASPEQAQEQQQDESQAQVSADDMAEEEVT
DETEMPDGEAPLEPPAPQPVSDADPDYRVFLDAHDEEIAAEDLAEPQELERLRAYLDQQLEPLKGAVSRL
ANKLQRRLQAQQNRSWEFDKEEGVLDAGRLARVVANPTTPLSFKVEKDMEFRDTVVTLLLDNSGSMRGRP
ISIAAICADVLARTLERCNVKVEILGFTTRAWKGGLSREAWLNEGRPQLPGRLNDLRHIIYKGADAPWRR
VRPNLGLMMKEGLLKENIDGEALEWAHRRMVNRPEARKILMVISDGAPVDDSTLSVNPANYLEKHLRDVI
AMVEKKKQVELLAIGIGHDVTRYYDRAVTITDVEQLAGAMTEQLAALFDSDPRARARVMGMRRTG
>gi|99080484|ref|YP_612638.1| hydrogenobyrinic acid a,c-diamide cobaltochelatase [Ruegeria sp. TM1040]
MTDGLLDMNAKPTETISVREVFGIDTDMTVKGFAEGTDRVPALDPTYKFDPDTTMAILAGFSHNRRVMIQ
GYHGTGKSTHIEQVAARLNWPSVRVNLDSHISRIDLIGKDAIKLRDGKQVTEFHEGILPWALRNPVAIVF
DEYDAGRADVMFVIQRVLEHDGKLTLLDQNEIITPNPFFRLFATANTVGLGDTTGLYHGTQQINQAQMDR
WSLVATLNYLSHDAETAIVLSKTPHYNTEKGRKQIAQMVTVADLTRTAFMNGDLSTVMSPRTVINWAQNA
EIFRDIGYAFRLSFLNKCDELERQTVAEFYQRCFDEELPESAANVSLG
>gi|99080485|ref|YP_612639.1| CzcN domain-containing protein [Ruegeria sp. TM1040]
MFDYLQTTHDLALMVALLAAILLATHLSLSLKCPSLGLWPAADGWRHHLAFGLFRVFCGATVVFALTEIG
VNGWGHWLRYAVGLPLMVMAFGITLWGYRFLGLDNTYCDTGGLVTGGMYEYSRNPQYVTSVLATVGLGIT
TGSWTTVALALVLFALYFLFVLNEERWLLKGYGKAFADYMRSTPRFLDERSLERLRAAL
>gi|99080486|ref|YP_612640.1| heat shock protein DnaJ-like [Ruegeria sp. TM1040]
MTKSDPFGFDMSIRSAKKKNPRGRRSMSGASETSVRVCDHEGCGEPGKFRAPKAPDVLDDFFWFCQQHVR
EYNQKWNFFEGTTEAEMNAQASKDKVWERTTKPLGDPEARAWARLGIEDPHQVLGNNATRNPGKNGQTAG
RRLPPTERRAIEILEAKDDWTKAEIRKAYKKLIKVLHPDMNGGDRSQEEQLQEVMWAWDQVKDSRSFK
>gi|99080487|ref|YP_612641.1| BolA-like protein [Ruegeria sp. TM1040]
MSVRDEIENTLREAFDPSRLEVVDDSDSHVGHAGHDGKGESHFNVLIRAEAFLGMTRVAQHRAVHKALGD
IVPRIHALALDIGS
>gi|99080488|ref|YP_612642.1| hypothetical protein TM1040_0647 [Ruegeria sp. TM1040]
MQHYEYKVVPAPNKGKKARGVKTPEARFAHGIEGVLNEMAQQGWEFQRAEMLPSEERSGLTGSKTTWRNL
LVFRRALGNTGLTEPTPATAAEPAPAVDSAPEVAAPEEAGKVDLPDDAPRVSTPDAQHAPEPAPLTAIAG
DPEAPPEAIPVPGPGARRMVADDGVEELSPVSGLTAALKARASRGKTDD
>gi|99080489|ref|YP_612643.1| peptidase T [Ruegeria sp. TM1040]
MTDSFDNTLQSRLVRYAAIDSQSDENSPTAPSTKIQFDMLHLVRDELTEIGAQDVQLTDYGVVLATIPGR
SEAPTVGFLAHVDTAPQFNATGVKPRVIKGYNGGEISFPDDPELVLSPEAHPYLAEKIGHDLITASGTTL
LGADDKAGVAIIMTMAEHLLQNPDAARPTIRIAFTPDEEIGRGVQPQLERDLGADFAYTLDGGELGEVEY
ESFSADRAVVKITGVSIHPGLAKEKMVNAIHLASKIIQTLPQATMTPETTADREGFIHATDMFGGSSEME
IRFILRDFEMADLEAKGALLRSVCEAVAATEPRAEITCEITPQYRNMRYWLEKDMTPVDLAHAACRDVGL
EPVSVPIRGGTDGSRLTEFGTPTPNIFTGMQCIHGPLEWISVQDMSLATQMCLSLAARAATLDKT
>gi|99080490|ref|YP_612644.1| hypothetical protein TM1040_0649 [Ruegeria sp. TM1040]
MTSNPPDLRPDLAPKPTFGTAPRPDQPTLGMVSLGCPKALVDSERILTRLRAEGYGISADYAGADAVIVN
TCGFLDSAKAESLEAIGEALKENGKVIVTGCLGAEPDYIREHHPRILAVTGPHQYEQVLDAVHAAVPPSP
DPFVDLLPATGVSLTPRHFSYLKISEGCNHKCKFCIIPDMRGKLASRPAHAVLREAEKLVTAGVRELLVI
SQDTSAYGLDRKYDVNPWKDGEVRSHITDLSRALGELAPADQLWVRLHYVYPYPHVRELIPLMADPENAV
LPYLDIPFQHAHPDVLRRMARPAAAAKTLDEIRAWRAICPDITLRSTFIVGYPGETEAEFQHLLDWMDEA
QLDRVGCFKYENVDGARSNDLPDHVAEEVKQNRWERFMEKAQAISEAKLASKVGQTLQVIVDEIDEDGIA
TCRTKADAPEIDGNLFIDEGTANLSVGDLVTVEVDEAGEYDLWGALR
>gi|99080491|ref|YP_612645.1| hypothetical protein TM1040_0650 [Ruegeria sp. TM1040]
MTDAPEIPEGLRPANENPWYILMTLYGEQEGEEIDVELHKKNRRAWNAWVGQALSAEERVAAAKSSQIKV
TELEAWDELGEKIKARFFEESNRRNVDTEGMLVFPEPAKPIWMGNTVFSENLVFENMVIASKVNFGSANF
MRNARFGFVTFAGVAVFGSAKFEQEAWFHFANFQKAALFGRARFKDFVYFFRARFGGCSGVRCLPSFAYC
QFERPTIFSRALFCDGYPDFSGAVLHDKTSFTARMDPTSDEVAQDKDLEGRTFWPQRTKQDPVSARESCA
TIRHLLTQQGLPEEAHFFFRREMRFASQIGSFWQRLPYRSFGWLSDFGYSIQRPLWWLAGICFLGMAAFW
TVFSFPGGPPVLSESDLGTAAALSFSNLFPLFGFGRVFLSEVLASLPRWAQVLSGAQTVLSLPLLFFLGL
ALRQRFRLR
>gi|99080492|ref|YP_612646.1| AsmA [Ruegeria sp. TM1040]
MRLILRILSAIVITIAVGVAILTFLPGQKIAELAAQQIEKQTGRQVVFGGDVRFSFWPTLGIQADDVALA
NADWAGPEPLLTAGRLTIGVDAADLIRGDIRITELTAIVPHLNLETREDGIGNWVFDAPAVGETPAQVET
DAEGEGTSVAIEAITLRGASLRYAAHGQDVVETNQVDLQLAWPDPNGTANVDLTLRPAGKPLRIAGEVGS
FRRFLLGEVASLGVTVTAEASKLRFDGQADLSGAFDGRITGASDDTSALLVALGQAAVDLPKGLGRAMTF
AADTTYTPDGRVSLRDLSLALDHNALRGDADLNLAASPLKVTAALEGDMLDLSALGAPTTGAGGNTAEPA
TQGWSTTPIDASMLALIEGDISLDVKGLQTSSVIFGPSRMTLSIERARAVLSFLPVQAFGGTLQGELIAN
NRNGLSVAGNLQFANVEMREALGQLAGYDKLNGEALGNLEFLGVGNSMDQIMRSLDGKGRVELGKGFFTG
FDLQSVMDPNGGNGGTTIFEGLTASFDMIDGTLRNDDLNAALKVLKAAGAGRVGLGSQDLDYTFTPTAFA
SETSAGVSVPVRIQGSWFDPEIKPDLSKLVQPKLDEAEEKAKQAVRDKLSDELGVPVETEEDLNDALKRR
VEEEARKQLLKFLGSD
>gi|99080493|ref|YP_612647.1| phosphoglucomutase/phosphomannomutase alpha/beta/subunit [Ruegeria sp. TM1040]
MTKPLPEVTPNSWSFLRDAMIKPTGFREYDARWKYPEEINLPGMTALGLGLGTQMIRRGIAPVIAVGNDY
RDYSLAIKNALILGLMQAGIKVKDIGPALSPMAYFAQFHLDVPAVAMVTASHNPNGWTGVKMGFDRPLTH
GPDEMSELRDIVLNGEGERREGGSYEFVEGVKEAYIDDLVGDFKMSRPLKVVCATGNGTASAFAPEVFER
IGVEVVPSHNALDYTFPHYNPNPEALEMLHDMSASVKASGADLALGFDGDGDRCGVVDDEGEEIFADKVG
VIMARDLSKLHPGSTFVADVKSTGLFASDPELQKNGVKADYWKTGHSHMKRRVKEIGALAGFEKSGHYFL
AEPVGRGYDCGMRVAVEVCKMLDRNPDMKMSDLRKALPRTWATPTMSPYAADTEKYDILARLVDKLVAKH
DAGELMAGRTIKEVVTVNGARVILDNGSWGLVRASSNTPNLVVVCESSESEDEMRAIFADIDAVIRTEPA
VGDYDQTI
>gi|99080494|ref|YP_612648.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Ruegeria sp. TM1040]
MKKIDINGLTIGNDCPLTVIAGPCQLESADHAQMIAGKLKEACDAAGAQFIFKASYDKANRTSLSGKRGL
GIDKGLEVLAGVRDTFGVPVLTDVHTEAQCIVAGDVVDVLQIPAFLCRQTDMLLAAGNTGKAVNIKKGQF
LAPWDMDNVVAKVESTGNDKILLTERGTSFGYNALVADMRGLPRMAQTGYPVVMDATHSVQQPGGQGGST
GGQREFAPVMARAAVSLGIASVFIETHEDPDNAPSDGPNMIYLKDMPQLIETLMGFDALAKANPIRI
>gi|99080495|ref|YP_612649.1| capsule polysaccharide export protein-like [Ruegeria sp. TM1040]
MTTKPKAKKFRIRRPSSGAEQPQAAAAATARPVPPPPAQETGRDQPLEMQSQVEQAAKASSAGDFAPAAS
DTPARASSPQMTPSQSGATTPPQDASEDVGSTDIEDIKREGLTGRQLRLARRVAQKHDLPATSDYDAVRL
LRLRGIDPFKRANMLELVVPQSQNASVPATQAPQGAPKPQTLPQTVEKSKPSAPPADHLSPTERRNREIR
SIQRDIARRRRRKMALLGARLGAFVLIPTLLAGYYYYKVATPMYASHSEFLVLKADSTGSSGFGGLLSGT
QFATSQDSIAVQAYLQSKVAMRRLDEEAGFRAHFSQDWIDPIQRLEPDASNDDAYKTYQRNVKIGYDPTE
GVIRMDVSAAEPAVAAEFSRRLISYAQENVNHLSEQKRADQVGDAEEALALAEQQRRDAQAELVRLQQQG
SVLDPEGVIASLRSQINTFELQLQQKRLELAALQDNLRPNAAKVEGTAADIKRLEALIANLNERMTDASQ
GENSLASLSVKIQMAQADLATRDMMLQSALQQVEQTRMEANRQVRYLTTAVEPVPADTPSSPRKFENTIL
AFLIFSGIYLMCALTASILREQVSS
>gi|99080496|ref|YP_612650.1| ABC transporter related [Ruegeria sp. TM1040]
MLEFVNVSKSFWTGTQRKIILDKVSFTVELGTSLGILAPNGTGKTTLINMMAGLEKPDEGEIYRGCKISF
PLGFMGGVINRLSAMENCRYIARLYGLDPDYVESYCRWLCGLNEYFDQPLGTYSAGMKSRFSFALMLALD
FDIYLIDEGMPSSTDVEFNRKAGIILQERLETTTIVIVSHQPRTLEKFANTAAVLMNGQLHMFETLEEAK
QLYDYETQG
>gi|99080497|ref|YP_612651.1| uracil-DNA glycosylase superfamily protein [Ruegeria sp. TM1040]
MQSNTDELKKEISACRLCAARFASTRTAHEPRPVVWFEPSARILIAGQAPGMRVHQSGRPFTDSSGDRLR
EWLGLSEDCFYDTSRVAIVPMAFCFPGYDAKTADLPPPRICGETWHDRVMSALGKLRLRILVGGHAHRYH
LGTRLGVTELVKGWRSLPEGVFALPHPSWRNTAWLKRNPWFEAELLPVLRARVKEQMQHD
>gi|99080498|ref|YP_612652.1| hypothetical protein TM1040_0657 [Ruegeria sp. TM1040]
MTEMTPLDLAHAAMEAAPADDAARLRFFERLADSELFLLLDKEPEGDRISPEIFETGEGRFVLVFDREER
LAQFAERIVPYAALSGRVIASMLAGQGIGLGVNLEVAPSSILIPDAAMGWLAETLAHAPGEVEAAISEVH
PPRGLPETLLAALDTKLATATGLARMAYLAAVNYESGGSGHLLAFIGAEPGAEPALAKAAGEALTFSGIE
AGALDVGFFAASEEISARLARVGLRFDLPEVETGQIYQPQRPGSDPEKPPRLK
>gi|99080499|ref|YP_612653.1| putative glutathione S-transferase YghU [Ruegeria sp. TM1040]
MSDTTYTPPKVWTWEQESGGQFASINRPIAGATHDKELPVGEHPFQLYSLATPNGVKVTVMLEELLAAGV
KDAEYDAWLINIGEGDQFGSGFVEINPNSKIPALHDRSGDAPVRVFESASILMHLAEKFGHFLPKEGAAR
TEVLNWLFWQMGSAPYLGGGFGHFYAYAPEKFEYPINRFTMESKRQLDVLNRELATKTYIAGEDYSIADM
AIWPWYGQLVLGRLYDAAEFLDVESYEHVMRWAKAIDARPAVQRGRMVNRAFGELSTQLRERHSAEDFET
KTQDKLEAAE
>gi|99080500|ref|YP_612654.1| hypothetical protein TM1040_0659 [Ruegeria sp. TM1040]
MANTEKPPLLAVLIDADNISAKFAGAMFEEIASLGEASIRRIYGDFSGGGPQGWSKDKLAAFAIVPHQQF
ANTTGKNASDIALVIDAMDILHSGRFDGFVLISSDSDFTRLASRIREQGLDVYGMGMRKTPAAFVRACKR
FIYVENLLTEVPKDVPKPQKSKPKPSTQSSGATLEQTAAPQDDEAPAELEDPQKLVLRAMDAISQEDEWF
SLGQIGQYITAASPDFDTRSYGKRKLSDLIATMKILETRRGEGNQILVRRLD
>gi|99080501|ref|YP_612655.1| hypothetical protein TM1040_0660 [Ruegeria sp. TM1040]
MSVPQAADAPARIWQRIEGGLICAAGLWLYAGAEAVLPIWGAMLLFFAPDLSCVGYLFGRRAGAFCYNLV
HLYAAGVVTLALAHLWQSPLLWEIAALWLAHCGFDRLLGYGLKSTQGFEFTHLGRIGRAREPRSDA
>gi|99080502|ref|YP_612656.1| hypothetical protein TM1040_0661 [Ruegeria sp. TM1040]
MRLDWSVQRPWAQEEDFVMKRFALAAVAALSFGLPAFAGEQFVDDTGFAVSGYDVVAYRSLEQAPVGQAQ
PAAVPGKADITADYNGATFAFATEENRATFLENPAYYAPAYDGHCAYGVSKGGKVPGNPNLWRIVDDKLY
LNITKNVVSFWEEDIPGNITLAEGNWPAIDPNPASGNPIPNFTSSAPVQD
>gi|99080503|ref|YP_612657.1| GcrA cell cycle regulator [Ruegeria sp. TM1040]
MSWTDERVELLKKMWGEGQSASQIAKELGGVTRNAVIGKVHRLGLSNRTTGGGSKAAAEPKEKPAPKAAA
KPKAQPKTEPARPVTPEPVAEAPAAEPKPSTPARKQIIPAGQPLPPQPSANEIPAEALAKVNEIEKKAKK
LSLMELTERTCKWPVGDPATEDFWFCGLPVQQGKPYCEAHVGVAFQPMSSRRDRKR
>gi|99080504|ref|YP_612658.1| ABC-2 type transporter [Ruegeria sp. TM1040]
MSDNNAQSSFRIEVGERRFGRVNWLGLQTLAGREIKRFMVVYTQTLLAPMVTAALFLLIFSIAIGPRRGD
VMGVPFISFIAPGIMMMTVIQNAFANTSSSLVISKVQGNIVDTLMPPLSGFEILLGYLAGAITRGLFVSV
GIGLGLALVLGMVPAHPLVALGFVVLGAAFLGGLGIVAGVFADKFDQMAAITNFVVTPLAFLSGTFYSVE
ALPPVLYAISHVNPVFYLIDGVRYGMIGVSDSDPAFGALVCLGATAVILLLAWQMLRTGYRLKN
>gi|99080505|ref|YP_612659.1| hypothetical protein TM1040_0664 [Ruegeria sp. TM1040]
MGTLRPRLLRLPLGEPERTDDAMTHETPQNPPLAAALILLATVFIAGTTLLAKSLGTEVLAPPLHALQIS
QGRFVFAFIGISAAVVVLRQKIHTPHWGLHIGRSSFGWGGVTLMFASVAFIPLADATAISFLNPVIGMIL
AIPFLGEKVGPWRWLAAAIALLGAMVLLRPTPASFQPAALLAFGAALAMGAELIFIKTLARREPPLQILW
VNNLIGMVIASTAALAVWQMPTPAQWAALVALGALMACAQACFVNAMARADASFVAPFAYATLVFAALYD
ALIFGVLPDWVTVLGAGIILSGAGLLAWRESVNGKRPLVTEPLPRSDTVL
>gi|99080506|ref|YP_612660.1| acetylornithine transaminase protein [Ruegeria sp. TM1040]
MIPSVLPTYNRAPLNFVKGEGSWLIEADGRRFLDLGSGIAVNALGHAHPALVEALTAQAQNLWHVSNLYE
IPQQQALADKLVAESFADTVFFTNSGTESCELAVKMARKYHYEKGHPEKVEIITFEGSFHGRSSAGIAAA
GSEKMTKGFGPLLPGFVHLPWGDAQAVAAAIDDKTAAILVEPVQGEGGIRPMPDQDLKDLRALCDEHGLL
LILDEVQCGVGRTGKLFAHEWAGIAPDIMMVAKGIGGGFPLGAVLASEEAASGMTAGTHGSTYGGNPLGC
AVGCAVMDHVAAPDFLSEVNRKAGLLRQKLEGLVASHPDVFEEVRGSGLMLGLKCRAVNAEVVKAGYDAE
VITVPAADNVIRLLPALTITDADIEEAITRLDAAATAVEAA
>gi|99080507|ref|YP_612661.1| ornithine carbamoyltransferase [Ruegeria sp. TM1040]
MNHFLDIHKTAPEDLRQIIDQAGQMKTARLGRPKGTPDDEQPLAGHMVALIFEKPSTRTRVSFDVGVRQM
GGETMVLSGKDMQLGHGETIADTARVLSRYVDMIMIRTFDETVLTEMAEYADVPVINGLTDRTHPCQIMA
DILTYEEHRGPIKGKKVVWTGDGNNVCASFLHAAGQFGFDLTFTGPAQLDPEDEFIGFARNAGSKITIER
DAAKAVEGADLVVADTWVSMHDSQSSKERRHNMLRPYQVNDALMAHAKPDALFMHCLPAHREEEVTSAVM
DGPQSVIFDEAENRLHAQKAVMRWCLGV
>gi|99080508|ref|YP_612662.1| phosphate transporter [Ruegeria sp. TM1040]
MTQPDWRSLDKDLVRLNQTERTTGYVVRPLLGFGLALTFMALAGVEAAFVLGTSQTTMMAMVAAMFGAYL
ALNIGANDVANNMGPAVGAKALPMTAALIAAALAEVTGALLGGSEVVATVSTRLIEPDAMSAPHMLIQAM
MSAMIASALWVNLATWMGAPVSTTQSIIGAILGATTAAAGFGAVDWLTFGSIATSWMLSPLIGAVLAMAL
LALIRQVITEQDEKLEAARRWVPILLAGMGGAFGTFFVLKLPETVAAATSAQALLAGGCLGLLSFVIARP
LILRRAAELENQKGAIKALFRLPLVIAAILMSFAHGANDVANAIGPLASIVQAMDLENTGSHPAEINAFT
TLDVPVWVLIIGAFGMAMGVVLFGPRLVNMVGNQITKLNPIRAYCVSTSAALTVIMASWLGLPVSSTHVA
VGAVFGVGFYREHAAAQARRAGQKETRPGLPHEDRSRRRLVRRSHVLTILAAWLITVPLSGLLSAGIYGI
LHLFSG
>gi|99080509|ref|YP_612663.1| NUDIX hydrolase [Ruegeria sp. TM1040]
MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEGKSSAESAAQE
AWEEAGVRCGRFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDFPEAHERTRKWVSPKDAAEMV
REPQLQDLLRGFSPS
>gi|99080510|ref|YP_612664.1| ATP-dependent helicase HrpB [Ruegeria sp. TM1040]
MTRLPIDDALPQLISALRARGRAVLEAPPGAGKTTKVPLAILDAKLTEGRILMLEPRRLAARTAAERMAS
TLGEPAGHTVGYRVRGEAKVSRSTRIEVVTEGILTRMLQSDPDLPGVGAVIFDEFHERSLNGDLGLAFCL
EVASALRDDLLLLAMSATLDAAPVAALMNAPIVTSEGRSYPVETRWLPAPLPAKARRIDALVDLVVQAEA
ETRDKDDRAGSGGLLVFLPGEGEIRRAASALERRLPAACQVRPLFGALPFAEQRAAIAPATEGRKVVLAT
SIAETSLTIEDIRVVVDMGQARRARFDPGAGMSRLVTERVTRAEATQRQGRAGRVSAGVCYRLWAQGEEG
ALAAYPPAEIEAADLTSLALELALWGAEPQDLPLLTPPPAGSFAEAQLLLQMLGALDTKMRITEHGRALA
RLPLHPRLAHMFTIAGPESATLAALLADRDPLRGAPVDLALRLEALQDLRRFRDRRPYEVKAPAHQAITA
EAKRLKRHRGGHGTAAPNPVDGPAAPLFPAAPSGEPLSPAAMAALAYPDRVAQRRKGDDARFVLSGGKGA
VLDNADPLAGASYLVVTDTDGNPREAKIRQAAQITLAEIRGLFGDQIAWQEVCSWSKRDRRVVARKQERF
GALVLDDRIWKDVPPDAVAHAMLDGVRDLGLRLSPAAARLATRVELLRAEGRDLPDFSEEGLMAKLEDWL
LPMISGMRSDADWKSFDALPALRAVLTWDQTQMLDRDVPGSFVTPLGRKIPIDYDGEIPGIAVRLQEVFG
VTRHPTVAGVALKVTLLSPARRPIQITRDLPGFWAGSYADVRKDMRAQYPKHPWPEDPTKAEATLRARPR
K
>gi|99080511|ref|YP_612665.1| arginine/ornithine transport system ATPase [Ruegeria sp. TM1040]
MDITELSKKILQADRRALARAITLVESARADHRAQADALLSELAKSDRQALRIGLSGTPGVGKSTFIEAF
GMMLIEQGLRVAVLAVDPSSARSGGSILGDKTRMERLSRERAAFIRPSPSQSHLGGVARRTRDAVALCEA
AGFDVVLIETVGVGQSETVVSELSDLFLLLLAPAGGDELQGVKRGIMEIADMILINKADGDLKATATRTC
ADYAGALRLLRKRPQDPEGFPKALTVSAIEAAGLDQAWEEIQALAGWRRENGFWDKNRSQQAQYWFAEEV
RQALLSRLQTSWAKSRMADLSAQVAGGAQTPQDAARDMLLGLGVGDVDPSGAP
>gi|99080512|ref|YP_612666.1| 50S ribosomal protein L28 [Ruegeria sp. TM1040]
MSRRCELTGKGPMTGNNVSHANNKTKRRFLPNLNDVTLQSETLGRGVKLRISAAALRSVDHRGGLDAFLA
KAKDEELSAAALKVKKEIAKAQAAEA
>gi|99080513|ref|YP_612667.1| hypothetical protein TM1040_0672 [Ruegeria sp. TM1040]
MKVMRRYIALLLAAALLLTGHSAAASRFDRDATGQVILCTGSGPVTVYVDANGTPTGAPHICPDCITHLL
DLAEYAPHLRAPYAPVRLVHRVLSRAQSTVAPLEEVRARAPPLV
>gi|99080514|ref|YP_612668.1| hypothetical protein TM1040_0673 [Ruegeria sp. TM1040]
MSYKSLGRSAAFGVFASVAFATSASAQMLVQDAYARSSNKMAGAAFMEITNQGASEDRLIDARSDVAKRV
QLHTHQEDANGVMKMMHVEEGFAIPAGETHLLRRGGDHVMFMGLTRELKDGETVDVILVFENAGEVSVQI
PVDMDRAPKGGHGNHSGHGDHSN
>gi|99080515|ref|YP_612669.1| NAD-dependent deacetylase [Ruegeria sp. TM1040]
MKKIVILTGAGISAESGLGTFRDKGGLWSQHRIEDVATPEGFARDPELVHRFYSARRQHAAEALPNAAHD
ALARLEERWTGDVIIITQNVDGLHEKAGSRGVLHMHGALSGALCAACAHRWPAPLQMTPETRCPACDANT
ARPDVVWFGEVPYHMEQIASHLAEADLFVAIGTSGQVYPAAAFVQEAATYGAQTLELNLEPSEVSADFAQ
HRFGKASDVVPIWVEDLLRDAA
>gi|99080516|ref|YP_612670.1| protein tyrosine phosphatase [Ruegeria sp. TM1040]
MESVLFVCLGNICRSPAAEAIFRESCPNIQCDSAGTAGYHVGSPPYPEMAKAARARGIDMSDLRARQFCA
EDFRNFDLIVVMDQDNQENVESLRPAGDRTPVVLFAPMAAGFDVEAVPDPYYTRDFDGCLDLLESAAQGL
KRYVTQAGV
>gi|99080517|ref|YP_612671.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MLMKGVTLRGLEVFEALAKSGSVAQAADITGLSQPAVSQQLRNLEKALGSDLVDHGRRPMVLTSAGRSFL
SRTQAILSELRLAQSELTVMDLSHLPALSIGLIDDFDNDLTPRLATILADSLTQCRFKMVTASSHDIHRA
MAEKDLHIGVAASTGELRTGVTEYPLVEEPFILVAPRGCITDPDDVGNQLNHLPLLRYARDQLISQQIES
HLSRNKMEFDDRFEIGSHLALMAMVARRIGWAITTPLGYMRAVRFHEDIDAYALPFAGFSRRISLFAQSD
WPDTVPLEVAGTVRRLTQSQMITPAINRLPWLAGQLRVIEE
>gi|99080518|ref|YP_612672.1| hypothetical protein TM1040_0677 [Ruegeria sp. TM1040]
MYRLTLAACLCLSTTLVFAPSAQAGTIERACRNSDRQAAEPTICRCIQKVAERRLTKSEQRTVAKWFADP
HRAQEVRQSDRRSDARLWERYKLFGTDAERICG
>gi|99080519|ref|YP_612673.1| GTP-binding protein LepA [Ruegeria sp. TM1040]
MTELSKIRNFSIVAHIDHGKSTLADRLIQSTGTVQDRDMKEQLLDAMDIERERGITIKANTVRIDYEADD
GERYVLNLIDTPGHVDFAYEVSRSMRAVEGSLLVVDSTQGVEAQTLANVYQAIDADHEIVPVLNKIDLPA
ADCDRVAEQIEDVIGIDATDAIRVSAKTGIGIKDTLEAIVKRLPAPTGERNAPLKAMLVDSWYDAYLGVI
VLVRIMDGVLKKGDQIKMMQTNARYGVDRIGVFRPAMQVVDELGPGEIGFITASIKQVRDTKVGDTITHD
KKGAETALPGFKPSVPVVFCGLFPVDSSEFEDLRDAIEKLALNDASFSYEMETSAALGFGFRCGFLGLLH
LEVIRDRIEREYNIELITTAPSVVYHIFMKDGEMLELHNPADMPDLSKVDHLEEPRIKATILVPDEYLGD
VLKLCQDRRGIQQDLSYAGSRAMVVYDLPLNEVVFDFYDRLKSVTKGYASFDYQMIGYRADNLVKMSVLV
NDEPVDALSTMVHRDRAEQRGRAMCEKLKDLIPRHMFKIPIQAAIGGKVIARETLSALRKDVTAKCYGGD
ATRKRKLLEKQKAGKKKMRQFGRVEIPQEAFISALKMDD
>gi|99080520|ref|YP_612674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. TM1040]
MIPVKGVAGQNVAVLGLGRSGLSAARALREGGAEAICWDDNPAARATAEAEGFTCRELTKQGAFDGISAL
IVSPGIAHLYPKPNPVIRAALVAGVPVDNDIGLFFRSVATSEWDEFDTAPKVIAVTGSNGKSTTVALLHH
ILEHVGRNSQMAGNIGRGVLDIDPPVDGGVVVLELSSYQTDLARALTPDVAVFTNLTPDHLDRHAGMGGY
FAAKRRLFAEGGPDRAVIGVDEDEGLFLAGQLSEGESDDRVIRISARQKLSGGAGWTVFARKGFLSEYRK
GRQAGSIDLRDIPGLPGAHNHQNACAAYAAARTLGLAPRVIEAAMRTYPGLPHRSQRIAEADGVSYVNDS
KATNVDSAAKALSAFKNIRWICGGLEKEGGLEALKGATDDVLKAYVIGREAAQFAMQLDVEAEVCTTMAQ
AVSRAMAEAGPGETVLLAPAAASFDQYDSFEKRGEDFIAEVTARLNG
>gi|99080521|ref|YP_612675.1| HI0933-like protein [Ruegeria sp. TM1040]
MRPMRIKTLILGAGAAGMMCAAHAGGDCLVVDHAKSPGEKIRISGGGRCNFTNMYAAPENYISQNPHFCK
SALARYTQWDFIDLVGRHGIAWHEKTLGQLFCDDSARQIVAMLVKELRDAGADLWLQTSVADVVHGRDGY
TVRLEREGKPVTITAQNLVLATGGKSIPKMGATGLAYDIAGQFGLPVLETRPGLVPLTFGEGRFKPLAGV
SVPARLSNTAASFDEALLFTHRGLSGPAVLQISSYWREGEDILVHLLPELDLFSALRAQRQESGRKDLTT
ELARHLPARLVEELAQDGSLRGRLADQSDAALEALCARLHSWRLKPTGTEGYRTAEVTLGGIDTDALSSR
SMEAKAQPGLYVIGEAVDVTGWLGGYNFQWAWASGHAAGTAIRG
>gi|99080522|ref|YP_612676.1| cell division protein FtsW [Ruegeria sp. TM1040]
MTEMVYGALPAQEGEPILPKWWRTLDKWTMTFIVTLFVIGLLLGLAASVPLAARNGFDNFHYVQRQAFFG
STALVAMVLTSMMSPTLVRRLAVIGFIFAFVALAFLPIFGTDFGKGAVRWYSLGFASVQPSEFLKPGFVV
LAAWMIAASQQIYGPPGTLLSFGLCMAVVMLLVMQPDFGQACLILFGWGVMYFVAGAPMLLLVGMAGVVI
IGGVIAYSNSEHFARRIDGFLSPDLDPTTQLGYATNAIREGGLFGVGVGEGQVKWSLPDAHTDFIIAVAA
EEYGLVLVSIIIFLYAMIVVRSLFRLMRERDTFIRLAGAGLACTFGVQAMINMGVAVRLLPAKGMTLPFV
SYGGSSLIAGGIAMGMLLAFTRTRPQGEIADALRGRGRG
>gi|99080523|ref|YP_612677.1| undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase [Ruegeria sp. TM1040]
MTQKLLLMAAGGTGGHMFPAQALAEAMLRKGWRVKLSTDPRGARYTGGFPHMTEITEVSSATFARGGLLA
KAMVAPRIAAGVASMAMQMRRDRPDVVIGFGGYPSIPALGAATLLGLPRMIHEQNGVLGKVNQKFATRVA
EVACGVWPTDLPAGAEGIHVGNPVRAAVLERQGAPYIPPGDYPMSLLVMGGSQGARILSDVVPGAIAALP
ETLRRHLRVSHQAREEDMARVAQFYADAGIDAEVQTFFADVPSRISEAQLVISRSGASSIADISVIGRPS
ILIPLATAAGDHQTANTRGLVEAGGAIRIPESALDTTSLAEQIAAVLTNAEGATQMAHAALSTGIPDATE
RLVARVEHLSEEAAP
>gi|99080524|ref|YP_612678.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
MTPATKLPGDVGPIHFVGIGGIGMSGIAEVLLNLGYVVQGSDLKSSRITQRLERLGATIFEGQRAENLED
AEVVVISSAIKPGNAELDEARLRGLPVVRRAEMLAELMRLKSNIAIGGTHGKTTTTTMMAELMVAGGFDP
TVVNGGIIHAYGSNARMGQGEWMVVEADESDGTFNRLPATIAVVTNIDPEHMEHWGDFDRLRDGFYEFVS
NLPFYGLAVCCTDHAEVQALVGRITDRRVVTYGFNAQADVRAVNLTYKGGVAHFDILLQAEGQKIEGCTL
PMPGDHNVSNALSAVAVCRHLGMKREEIRTALAAFGGVNRRFTKVGEVDGVTIIDDYGHHPVEIAAVLKA
ARQAIGTEGEGRVIAVHQPHRYSRLSNLFDDFCACFNDADVVAIAEVFAAGEDPIEGASRDDLVAGLIRH
GHRHARAILNEDDLLRLVREQTRPGDMVVCLGAGTISAWANGLPERLRG
>gi|99080525|ref|YP_612679.1| hypothetical protein TM1040_0684 [Ruegeria sp. TM1040]
MMNISLILACIWILVANVLALIPSRDNHWTRAYVLIAIGIPLLGYVTYENGPWWGLAMLVAGMSILRWPV
IYLLRWMRRG
>gi|99080526|ref|YP_612680.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Ruegeria sp. TM1040]
MTDLPAVRGRLTPNRDLSDLTWLRVGGPADYLFQPADLEDLQEFLRNLPADMDVFPMGVGSNLIVRDGGL
RSVVIRLGRGFNGIEVDGDTVTAGAAALDAHVARKSAEAGVDLTFLRTIPGSIGGAVRMNAGCYGSYVAD
VFMSAQVVLRDGSLATLSAEDLQFKYRQTELAPGAVLVSATLRGPKGDPDALAARMEDQLRKRDETQPTK
ERSAGSTFRNPAGFSSTGKADDVMDLKAWKVIDNAGLRGATLGGAQMSEKHSNFMINAGGATAADLEGLG
ENVRKKVYADSGIWLEWEIMRVGDPKRS
>gi|99080527|ref|YP_612681.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040]
MGGASGTLPKVAMLMGGPSAEREVSLSTGRECARALRGQGYEVVEVDAGPDLVAQLNDIKPDVAFNALHG
RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERSKAAYRTAGLPVVDSVIAAKADVMARHVIAPPYVV
KPNNEGSSVGIYIVHEATNSPPQLSEEMPAQVMVEAYAPGREMTVTVMGDRALCVTDILTDGWYDYEAKY
ATGGSRHVLPAEIPDEIADLCHDYALRAHQVLGCRGISRTDFRWDEARGADGLVLLETNTQPGMTPTSLS
PEQAEHVGLTFGQLCAWLVEDASCER
>gi|99080528|ref|YP_612682.1| cell division protein FtsQ [Ruegeria sp. TM1040]
MRALTSRLSRSRAGESKADPAPSRLKYRIQRWMLTPGIRTGLRVGLPLGVLFIAAGSYLASETRRDHLMA
LYNEARASFETRPEFMVNVMAIDGAGESVATDIREVTSLDLPVSSFDLDLAAIRDLIVGLDPVKTASVRI
RPGGILQVDVEEREPAIVWRSRDGLALLDETGAFVAELGQRSLHPDLPLIAGRGADERAPEALRLFAAAR
PLGSRLRGIVRIGERRWDVVLDRGQRIQLPVKRPVAALERVIAVSEVKDLLERDVAVVDLRLPTRLTVRM
NAPAVEDWWRIRQLNESSY
>gi|99080529|ref|YP_612683.1| cell division protein FtsA [Ruegeria sp. TM1040]
MRAPIDMTDLYQSQRAMRQMRRQAMQRGVVAILDVGSSKISCLVLRFDGVTRLSEDNSIGSLAGQSGFRV
IGAATTRSRGVQFGEVCAMQETERAIRTAVQAAQKMAEVRVDHVIACFAGALPRSYGLDATVELEGQEVT
ENEIARVLAACEVPEYGAGREVLHAQPVNFALDNRSGLEDPRGQMGQALSVDMHMLTVEAAAIQNLVRCV
QRCDLELAGIASSAYVSGISALVEDEQELGAACIDMGGGTTSVSIFMKKHMIYADAVRMGGDHVTSDISM
GLGVPTATAERIKTMSGGVHATGADDRDMIDIGGETGDWERDRRTVSRAELIGIMRPRVEEILEEVRVRL
DAAGFDHLPSQQIVLTGGSSQILGLDGLASRILGQQVRLGRPMRVHGLPQAVTGPGFASAVGMCLFAAHP
QDEWWDFDAPVDRMAGGSMRRVVRWFKDNW
>gi|99080530|ref|YP_612684.1| cell division protein FtsZ [Ruegeria sp. TM1040]
MTLNLSMPGQEELSPKITVFGVGGAGGNAVNNMIAKQLEGVDFVVANTDAQALQQNAAKNRVQLGVKVTE
GLGAGARPSVGSAAAEESIEQIVDHLAGAHMCFITAGMGGGTGTGAAPIIAQAARELGVLTVGVVTKPFQ
FEGAKRMRQAEEGVESLQKVVDTLIIIPNQNLFRLANEKTTFTEAFSMADDVLYQGVKGVTDLMVRPGLI
NLDFADVRAVMDEMGKAMMGTGEAEGEDRAIQAAEKAIANPLLDEISLKGAKGVLINITGAHDLTLFELD
EAANRIREEVDPNANIIVGSTLDTEMEGKMRVSVVATGIDASEDANEVPVPRRPMSAPLTKTVSVEENRQ
APLELTEQVDAPTPVAAQAGAGQEPSLFSEFDADEGAASDDVIEDTNEAADANDGLPPPAYQPQAQQPAP
QPQPQPAQPAVTQAEVFVAPRAPAPGTPSQDAIVRLREAAQRHQASQQPQRPAQQPAAAAPQQERRSAEA
QEQRRFGLNSLINRMTGHPQETSQNRPQAAQRVQPSMQSAQPQQAEQPHDEDQERIEIPAFLRRQAN
>gi|99080531|ref|YP_612685.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Ruegeria sp. TM1040]
MRHIVQNTLKAAVTFEGTGLHSGKPAKMVVHPAPAGHGITFVRVDIALGNTLIPARWDMVERTALCTRLV
NGAGVSVSTVEHIMAALAGCGVHNARVEIDGPEVPIMDGSSAEFVREIMATGIQRLGVPVRAWKVLKPVM
VETEDARATLLPCDRLKISFDIDFAEEGIGHQSRELDLRNGTFARELCDSRTFCRRADVETMQANGLALG
GVPGENAVVFDGPTVHAGSGLRHPDEPVRHKMLDALGDLALAGAPIFGHYVGERAGHSLTNTLLRALFDT
PGAVREVTCDPIMTARLPGQGLVWSEIPAQVRRVA
>gi|99080532|ref|YP_612686.1| competence lipoprotein ComL, putative [Ruegeria sp. TM1040]
MIGIRAAAKGIGVVALMATLAACGGADGDAQRSSLDLEGFSPAQIYERGEFELARSREKDAAYFFSEVER
LYPYSEWAKQSLIMQAFTYHQAEDYENSRSAAQRYIDFYPTDADAAYAQYLLALSYYDQIDEVGRDQGLT
FQALQALRTVIEVYPESEYASSAILKFDLAFDHLAGKEMEIGRYYLKRQHYSAAINRFRVVVEDFQTTSH
TAEALYRLIEAYLSLGLTDEAQSAGAILGHNFQSTDWYEDGYRLLTAQGLKLKDRGNNWLAKIYRQSIKG
QWL
>gi|99080533|ref|YP_612687.1| DNA repair protein RecN [Ruegeria sp. TM1040]
MLRALDIRDLLIIDHLELSFQPGLNVLTGETGAGKSILLDSLGFVLGWRGRAALVRQGADQGEVVAEFDL
PEGHAARAVLEEAGLPVSDTLLLRRVNTSDGRKTAWVNDRRCSGEVLRALSDTLLELHGQHDDRGLLNPR
GHRAMLDDFANVQAQLDEVRAAWGAAARARKQVEETRAALESVRAEEEFLRHSVSELDKLSPEPGEDESL
DTRRRQMQAAERIRGDIARAHGLLSEGAEGAMGEAQRWLEAVSGDAGEALDAPLAALSRAMIELGEAQDG
VERFLEGLDFNPGDLEDCEERLFAIRALARKHDVQPDDLADHADVLREKLQALDAGDQNLADQEDALRAA
EATYAAAAERLSAKRRDSAATLDAAVMAELAPLKMERAVFETKITEAEPGPDGVDEVAFTVATNPGAPAG
PLNKIASGGELSRFLLALKVCLRGEDAAKTLIFDEIDRGVGGATADAVGRRLKALADGSQVLVVTHSPQV
AAQGAHHWRVQKSVTEGVTLSQVVPLNEGERVDEIARMVSGDKITPEARAAAKALLADV
>gi|99080534|ref|YP_612688.1| Cl- channel, voltage gated [Ruegeria sp. TM1040]
MARRESSPLSEYLANTKARLRDARRVLVHRGPSQLQFWLIALVIGVLAGFAALFFRKGITALQGAVYGAE
DVDYLHSFAATLPWYVLLLVPVFGGLIVGIILHRFTPDGRVRSVADVIEGAALRDGRVEIREGLASACAS
FLTLSTGGSSGREGPVVHIAGMISTWVSDRIRADGITGRDLLGCAVAAAVSASFNAPIAGALFAMEVVLR
HFSVNTFAPIVVASVAGTVINRLEYGDVTEFVLTTPGALQFYVELPAFLMLGLICGVVAVVLMHSIFLAD
RVGTAVQSALGMPRWLRPTVAGFLLGLVAIWYPHIIGVGYETTVLALSGSLLLSQAILFTIVKVAAVSIT
MGGRMGGGVFSPSLMVGALTGLAFGLIATNFLPDVSGTHTLYAFAGMGAVAAAVLGAPISTTLIVFELTG
DWQIGLAVMVSVSMSTALASRMVDRSFFLTQLEKRDLHCAAGPQAYLLGTLRVGKVMRPLADSDPESAQA
LIDEGIAISPTSTLEAALPIFDRAGVEYIPVVTEEEFSEETGEPLMTLIGVLHHVDSLKAYNSALVAIAA
EEHR
>gi|99080535|ref|YP_612689.1| hypothetical protein TM1040_0694 [Ruegeria sp. TM1040]
MIFTAFGKALGQIGDPRFQRVLLLGVGLTFALLVAAYVGLLVLIQMFVGPETSLPLIGQVTWLNDLLSVG
SFFFMMLLSVFLMVPVASAITSMFLDEVAAAVEAKHYPGLPPVPGLSVWEGVKDTVNFLGVLITANVLAL
VLYVMFPPAAPFIFWGLNGFLLGREYFTLAAARRVGLIEAKRLRRRHGATIWAAGVLMAMPLSIPLVNLL
IPILGAATFTHIFHALWRWR
>gi|99080536|ref|YP_612690.1| nitroreductase [Ruegeria sp. TM1040]
MPQRNDAALDFLQTRRSRPAKTLQAPAPTRAELMPLLTAAARTPDHGKMEPWRFIVVEKAAMQRLGDLTA
EAGLRLGKSPEDIAKARSQFDLGQLAVVVVEIQKESPKIPPIEMTYSAGAVCLALLNAALAAGWGANWLS
GWMSHDRGFCEAAFDLAENERIAGLIHIAAEGAAPPERPRPDVTALTTWVET
>gi|99080537|ref|YP_612691.1| hypothetical protein TM1040_0696 [Ruegeria sp. TM1040]
MAKPKARDLADLRDLAQPGAQIAVRVTPKAAQNAVLRKRDEIKVLVTTVPEGGKANADVVALLSRALGVS
PSRLTLLRGATSRDKVFLVTAP
>gi|99080538|ref|YP_612692.1| hypothetical protein TM1040_0697 [Ruegeria sp. TM1040]
MFTIEHEFDSTVITLVDEGKPHLTEDVIINAFAECVTIEQFDPRTHSTHRITLSPEQLQDLAAALDLPEG
VYRLVLDKSR
>gi|99080539|ref|YP_612693.1| peptidase M48, Ste24p [Ruegeria sp. TM1040]
MRRFLILFVLLVAGCTGVDPNNPQYRAFVAVAEDVEPVGEAQCRSKDPERNCDFQIQLDLNPSAPANAFQ
TVDRSGRPVVIFTRSMLDSFRNPDEMAFVMGHEMAHHILEHLDQQRINAVKGAVFLGELVSLEGGTPEQV
ANAQYVGAVVGSRSYSKAFELEADALGTLITYQAGYRPSVGVKFFEEIPDPGDVFLGTHPANPDRIRIVQ
RTIRKYGLN
>gi|99080540|ref|YP_612694.1| hypothetical protein TM1040_0699 [Ruegeria sp. TM1040]
MTKKTEAAEKALTKLGVVLTDRGSKYAVSGAPVQSREEVDAVLSTLKEDRSYAKATHNTWAAMLPSGGLK
ADDGESGAGMVILRMMEREALSNHVIIVTRWYGGKKLGGDRFRRVQDAVRAYLDAG
>gi|99080541|ref|YP_612695.1| hypothetical protein TM1040_0700 [Ruegeria sp. TM1040]
MIDPDKLKTHAALFDRMGKAVGLDLEEEAISGSLQFEEIAEAVLRCTRCACLKTCSRYLGTLTQEIDRTP
DYCRNSDLLAYLKEERGLAAE
>gi|99080542|ref|YP_612696.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Ruegeria sp. TM1040]
MLDLTYELPKPKVIAGAKHDWELVIGMEVHAQVSSNAKLFSGASTQFGAEPNSNVAFVDAAMPGMLPVIN
EYCVEQAVRTGLGLKADINLWSAFDRKNYFYPDLPQGYQISQLYHPIVGEGEVLVELGDGTARMVRIERI
HMEQDAGKSIHDMDPSMSFVDLNRTGVCLMEIVSRPDIRGPEEAAAYIAKLRQIMRYLGTCDGNMQNGNL
RADVNVSICRPGAYEKYQETQDFSHLGTRCEIKNMNSMRFIQQAIEVEARRQIAIVEAGGEVEQETRLYD
PDKGETRSMRSKEEAHDYRYFPDPDLLPLEIEQAWVDDIKSKLPELPDEKKARFIKDFGLTDYDASVLTA
DLESAHYFDAVAKGRSGKLAANWVINELFGRLKKDDKDITDSPVSPAQLGGVIDLIASDAISGKIAKDLF
EIVYTEGGDPAQIVEERGMKQVTDTGAIEAALDEIIAANPAQVEKAKENPKLAGWFVGQVMKATGGKANP
KAVNQLVAKKLG
>gi|99080543|ref|YP_612697.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MILRSTKWAIALSVSFLMAGMDSARAEAIKAYTAALPPYTIAPDLEMPGISHEILEEMSKRSGVTIEIEY
LPWKRAQSMAQKTPNALLFTAARTESRETVYKWIAEFIVADEVFATTTEAVNSLEDARQLSRIATLGGAP
REKRLAKLEFGNVQSTPDTATAARLLTGGRVDAWFTLSQRVLHAVKSEGLDPSTIVIGTPVGSLRLWLAS
NAEFDPEVAAKLAQAFEDMKADGSYEAIVSAYLN
>gi|99080544|ref|YP_612698.1| RNA binding S1 [Ruegeria sp. TM1040]
MFRTAKTVLRPQWLRIIVADAKAKEQQVLDTTLRIARKISEEIGSSVQQVNAAVGLLDEGATVPFVARYR
KEVTGGLDDTQLRTLSERLEYLRELEKRRAAILETITQQDKLTDDLAASIAKAETKAQLEDIYLPFKPKR
RTKAMIARENGLEPLLEAILADRSADPEVLAANYLSGEVADTKTALNGARDILTERLTENAELLGRLRNF
MQSEAILRSKVVEGQEQAGAKFSDYFDHSEAWKTTPSHRALAMLRGSNEGVLTLDIAPPGEEGVTRAEEM
VAAVLEVRSSAPGDKWLRKAAGWTWRVKLSLSMMLELMGDLRSRAQDEAISVFARNLKDLLFAAPAGARP
TLGLDPGIRTGVKAAVVDATGKLVATETLYPFQPKNDLRGAQVSILKLIAEHGVELIAIGNGTASRETER
MVAEVLKNLPAKVKAPTKVVVSEAGASVYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKIEPKS
IGVGQYQHDVDQHKLSKSLEAVIEDVVNAVGVDLNMASAPLLAHVSGLGPGLAEAIVAHRDLNGAFKTRK
ELLKVARLGPKAFEQCAGFLRIQGGKEPLDASAVHPESYDVARKIVSACGRDIREIMGDATALKSLRAEQ
FVSGEVGLPTVHDIFAELEKPGRDPRPSFVTASFTDGVEEITDLKPGMVLEGTVTNVAAFGAFVDIGVHQ
DGLVHVSQLADKFVKDPHEIVKTGQVVKVTVVEVDVPRKRIGLTMKKDGGASAREDRAGRGPSQNAARGG
AKGRNSSSPKRHGSAAPRGKSASDNGATGNGALGAALMDAFKKK
>gi|99080545|ref|YP_612699.1| hypothetical protein TM1040_0704 [Ruegeria sp. TM1040]
MPFSAPPAKDGLKHLMRLLSARMPLPITRAGEILPRALRSWPEALKKTRGAPETLSSEPLSLEDVLTIPT
PETNAEDEACDRAIAEGQFLARQEDWERIEAEILAADTARRATPGGTPIADLIAYGARADIINAVEHALS
EGLSLTERVTLDGIMALERTRLECARTPVMTTVVALAHLDIAWAFRRISKRKSHRQRDTLHARAEAHHAR
AKTLLSQIPNDARARPFVAAARCALYSVEASAGCRQIADDYFDLIRLDPGNPRHLRALGTHLAEQGAEGL
RALELEARRVAALVQAQWGAAGYAWVYFDAVAQSDAACLEVDVPYFLDGVADIVARAANQERINLLSAYC
SIALKPQPETAADAAAVRQQIAQAAHWLIREHLRELHPMVWAHAAAGFDNDAQVRSLRQFAERGRMDALR
AIAESFRDDIEAGYRVVFTADGPELTAG
>gi|99080546|ref|YP_612700.1| hypothetical protein TM1040_0705 [Ruegeria sp. TM1040]
MTPDPEAQPQDVFLFQRDARSLRSIVLVAAWAAAVGLIWVVFDARGWVLALLALPLLPSLWELWRPHAAW
LRITDTHLSWRSLRSSGDISLAEIDHIRMVTRSDFSVRATIHTRPGTHHQIPPEVTPKASVLEAALQQRQ
VALKIQHFTVL
>gi|99080547|ref|YP_612701.1| aminopeptidase N [Ruegeria sp. TM1040]
MKDAAPSTQPETFYLKDYTPFGYVVERVELVFRLSPEATRVLSKIRFAPNPDVSDRVFFLHGEKLKLISA
QIDGEEVAPNVTDTGLSCEVPDTPFTWEAEVEINPKANTALEGLYMSNGMYCTQCEAEGFRKITYYPDRP
DVMSTFNVRIEGDEKVMLSNGNPGESGEGFAEWHDPWPKPAYLFALVAGDLVNHPDRFTTRSGKDVELNI
WVRPGDEGKCAFGMEALKKSMTWDEEVYGREYDLDVFNIVAVDDFNMGAMENKGLNIFNSSCVLASPETS
TDANFERIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDAQFTADMRSAPVKRIEDVIELRARQF
PEDNGPLAHPVRPEAFQEINNFYTATVYEKGAEVIGMLKRLVGDEAYYKALDLYFDRHDGQACTIEDWIK
VFEDSTGRDLAQFKNWYSQAGTPRLSVEESFEDGTYTLTFRQMTPPTPGQDHKDPKVIPIAVGLLSPTGD
EVLPTTVLEMTEAEQSFSFEGFKTRPIPSILRDFSAPVILTRESSAKERAFLLAHDTDPFTRWEAGRELA
KASRIAMVTDGASPDSNYLEALQSLVRDDHLDPAFRALVLAPPTESEIAQALADQGVTPDPDAIHDAAET
FAQTLAQSLSDSLPRLFAATLVDGAYVPDAKGAGLRALNGRILGLLTRIDGGEAATKQFETANNMTVQNS
ALACLLKAEKGDAQSQAFFEQWQDDRLVMDKWFGLQVATARPERAPAIAQSLTEHPLFTIKNPNRFRAVM
GALAMNHAGFHKADGSGYRLLADQLIALDPLNPQTTARMCSAFQTWKRYDAGRQDKIRAELKRIKATEGL
SRDTNEMVSRILDA
>gi|99080548|ref|YP_612702.1| NAD(P) transhydrogenase, beta subunit [Ruegeria sp. TM1040]
MDFGFTTAAYVVAAVLFILSLGGLSGQESAKRAVWYGIVGMALAVFATLIGPGSGLWFLSLVLIGAGGVI
GYMLASKVEMTQMPELVAGMHALVGLAAVLVGFNAHIELGRVLAMDEGARKSLEGFAALLAKKDSVEINI
LRVEVFLGVFIGAVTFTGSVIAYGKLSGKVSSAATKLPGGHMLNIGAAGISLLCLFWYLGAGGMLPLVLM
TLAALFIGYHLIMGIGGADMPVVVSMLNSYSGWAAAAIGFSLGNDLLIVVGALVGSSGAILSYIMCKAMN
RSFVSVILGGFGGSAGPAMEVEGEQVAIDADGVATALEDADSIVIIPGYGMAVAQAQSNVAELTRRLRAK
GKNVRFAIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPETDVAIVIGSNDIVNPAAQEDPNSPI
AGMPVLECWKAKQVFVSKRGQGTGYSGIENPLFFKENTRMFYGDAKQSLATLLNLID
>gi|99080549|ref|YP_612703.1| NAD(P) transhydrogenase subunit alpha [Ruegeria sp. TM1040]
MKIGTPKEIAEGESRVAMTPASAKDLQKLGFECCIEAGAGEAAGFTDAAYAEAGVEVIKTAAGLWKAADI
IAKVRAPSETELKRLNKSKTLISFFNPGGNEEGLELAKSKGATVIAMEMVPRISRAQKMDALSSMANIAG
YRAVIEAGNNFDRFFTGQITAAGKVPPAKVLVVGAGVAGLAAIGTSTSLGAVTYAFDVRPEVAEQVESMG
AEFVYLDFEEEQQDGAATGGYASVSSPEFREAQLAKFRELAPEMDIVITTALIPNREAPKLWLADMVAAM
KRGSVIVDLAAERGGNVEGTVKDEKVVTDNGVTIIGYTDFPSRMASQSSSLYATNIRHMMTDLTPEKDGQ
VVHDMEDDVIRGATVTHAGEITFPPPPPKVQAIAAQKKPEAPKELTAEEKRAAEVAAFKQQTKNQVTLLA
VGAALLLAVGLVAPASFMQHFIVFVLSVFVGFQVIWNVSHSLHTPLMAVTNAISSIIILGALMQIGSGSW
LVIFLAALSVFMAGINIFGGFLVTRRMLAMFQKS
>gi|99080550|ref|YP_612704.1| hypothetical protein TM1040_0709 [Ruegeria sp. TM1040]
MLRCGKKLKFRPQMPEIEPRGGLRFTAGTQQQMLQEMKSTGCEIWLFCDISTADTAKIPDKIDKLTVVAG
DLAAK
>gi|99080551|ref|YP_612705.1| peptidase C26 [Ruegeria sp. TM1040]
MWRSNVRPKVGIIGNSYLMNDQYPTHAGGTMNSDAVANVAGCLPLLIPTDPRFVSVEELLESFDGFLLTG
GRPNVHPQEYGEDPTEAHGDFDRARDAITLPLVRECVKRGQPFFGICRGFQEVNVAMGGTLYPEIRDLPG
RMNHRMPPDGTIEEKFALRHPVKLREGGIFHQLLGAAEVMTNTLHGQGIKTPGARIVVEGEAEDGTPEAL
YVKDAAGFSLAVQWHPEYRAGEDPVSRPLFEAFGRAVHSWSEDRRPAALSLSA
>gi|99080552|ref|YP_612706.1| malate synthase G [Ruegeria sp. TM1040]
MSRIERNGLQVASELVAFVEDQALPGTGVSKEAFWAGLAGLVEGMGDENRALLAKRAEIQGQIDAWHLEH
RGQPHDAAAYKDFLTEIGYLVPEGPDFEVETQNVDPEIAHVPGPQLVVPITNARFALNAANARWGSLYDA
LYGTDAMGDLPSGSGYDAERGARVIAWGRQFLDETFPLTAGSWSDVAALQVQDGALAPALKDATQFAGYA
GDATSPRRILLKNNGLHAILEIDASGNIGKGDAANINDITLESALSTIMDCEDSVACVDAEDKVSAYANW
LGLMKRDLSEEVSKGGKTFTRVLNDDLSYTTPTGEASKLKGRSLLLVRNVGHLMTNPAILDSAGREAGEG
LMDAMITVMVAMHDLKSEGGNSLHGSVYVVKPKMHGPEEVAFAVKIFDHVEDALGLPRNTVKIGIMDEER
RTSANLKECIRAAKSRVAFINTGFLDRTGDEIHTSMEAGAMLPKGEMKSTAWIASYEDRNVDIGLACGLQ
GRAQIGKGMWAMPDRMGEMLDAKIGHPKSGATCAWVPSPTAATLHATHYHKVDVLSRQNELKAEGARGTL
DDLLTIPVMAGQNLSDEAITREIENNAQGILGYVVRWVDQGVGCSKVPDINDVGLMEDRATCRISSQALA
NWLHHGVVSEQQVMAAMQKMAAVVDGQNAADPSYRPMAPGFDGIAFQAACDLVFKGRIQPSGYTEPVLHA
RRLELKAQG
>gi|99080553|ref|YP_612707.1| hypothetical protein TM1040_0712 [Ruegeria sp. TM1040]
MAAIEDHPLRYQLANELHARPFPTISVPGTVAYLAVKQPSEAVHRDRMADLQHLKDLLDRHGAAHPQPGA
THHTAQLGRYTLKWEQHTEFVSYTLYGDGVSDRAFDPQDFDLFPSDWLAKAPGQRITSALIRVVARPDAE
QIKARVRDWFVPESLAMASVLDDNAVVAGDFRIDPAGHVRFALFVNEETGPQRVGRVVQRLCEIETYRAM
SMLGFSRARGLTPTISAMDVSLSEMMREMTRGEVPAEQTLSQLLTISAELEAMAAQSAFRFGATGAYAAL
VNQRISLLREERFVGFQTMTEFMLRRFEPAMRTVESTEKRLEVLADRARRAGELLRTRVDVERSAQNSAL
LESMDRRADLQLRLQHTVEGLSVVAISYYAVSLAGYALYPLGTMLGLSKGILTAILTPLVIGAVFLAVRR
IRNSLH
>gi|99080554|ref|YP_612708.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MTDAAKEKTLQHSSVQDELATPARSQWREIWVQFKSHRGALFGGCLFLFIVLGVVVGPFIYWNDAKFVPT
GRDFITLRDMRPIYHALWDPSAKMDWAYPLGTDNLGRDTLARLMFGGRVSLAVGMAAMILALILGSLIGV
LAGYFKKLDGLLMRMTDLFLALPLLPMILVAAVLFRESLSKTIGPEGGIFVLIVCLIGITSWMPTARIVR
GDVLAIKEREFVLAARSIGTKPGNIISRHILPNVLSPIMVSATLGIATAIITESALSFLGFGFPPDFPTW
GRLLNDAVDRMTLFPERVLWPGILISLTVLSVNYLGDGLRDALDPRIRGR
>gi|99080555|ref|YP_612709.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MLTFTIRRLIIAVPTLLFISLVIFLLLELAPGDPMAQVPLTVPPEVKEKMRLALGLGEPVHIRFWKWLVQ
FFWIEPQVLIDHIFGTSFSAGDLRVISWQTRSPVMDIVVQRLPQTLWVVGTAYIVAILIALPIGIYSAYR
QYSWFDQMGTFVSMVGFSVPPFFSGVLVIVIFSVQLGWFPSIYDTTLEVNSWETFVKQLQQMVMPVMVLA
LQITAQLSRFMRASMLDNLNQDYVRTARAKGLGEYTVVMVHVLRNSMIPVVTVIALGIPSIFGGAIITEQ
VFKVNGIGQLLIGAIQANDLPMVQTLTFIFAVLIVLFNLIADVLYGILDPRIRYD
>gi|99080556|ref|YP_612710.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MTLKSLLLGAVATAAVAPAAFAERGSDGQVNIIYWQAPSIMNPFLSGGTKDVEAASLVIEPLARYNSSGE
MVPWLVEEVPTVENGGVSEDLTQITWKLKPGIKWSDGSDLTSADVKFTYEYCTHPEGGCAQVTKFEGVTS
VETPDDSTVVVTFDKATPFPYGPFVGGESPIIQAAQFAECLGAKAPECTEANFNPIGTGPFVVDEFKPND
VITLSANPNYRDPAKPAFAKVLFKGGGDATAAGRAVMETGEFDYAWNLQLAPDVIAQMEAGGKGQAVAGF
GPLLERIMLNNTNPSADLSPEERSVIRPHPFLSDPAVYKAMSMAIDRPLLVEIGYGKAGRVSCSWVPAPE
AFAISPEGCETQDIAGANAMLDAAGIVDTDGDGIREKDGVPLKILYQTSTNAVRQDFQALIKQWWSEIGI
ETELRNINSSVFFGGDPGSPDTFQKFYADVEMYANTFNGTDPQSYFGNGLCDKAPTPASQWQGENISRFC
DEEFDALHAELSQTADMAKRIEIGQQLNTIIFERGGMIPLVHRGRLSAHSNTLGGVDLNVWDSELWNAAD
WYRSE
>gi|99080557|ref|YP_612711.1| ABC transporter related [Ruegeria sp. TM1040]
MLDQPIAQIKGLRVEFETKDGPVVGVENVSFDVTAGETLCIVGESGSGKSVSSLSLMRLVEYGGGTIAGG
ELMFNPGDGEAIDLAQAETDLMKQIRGNQIGMIFQEPMTALNPVFTVGRQLTEGLRIHKGMDKKQAEARA
IEILREVRIPEAERRMKQYPHELSGGMRQRVVIAMAMACEPRLLIADEPTTALDVTIQAEILALMDRLKR
ETGTAVMFITHDMAVVAQMADRVVVMFRGNKVEEGTVHEIFENPQHDYTKALLAAVPKLGEMRGKDYPEP
MKLMGVEQAEIKPITGTDEVLLNVENLVTRFPVKGGLLRRTVAQVHAVEDVSFKVFKGQTLSLVGESGCG
KSTCGRSILRLVEPTSGKVEFEGRDVIGLNQKELHKARLDMQMIFQDPFASLNPQMQLMDQVAEPMKNYN
IASGSEIQDRVASLFDRVHLPRSFMRRFPHEMSGGQRQRIAIARALALNPKLIVADEAVSALDVSVQAQV
LNLMMELQADLGLSFLFISHDMAVVERVSHQVGVMYLGRLVEIGPRARVFENPAHPYTQALMKAVPIADP
NQRKSEKDLNFKPIPSPIHDMNYQAEPSQYMEVEPGHFVLTTDSGY
>gi|99080558|ref|YP_612712.1| acetylornithine deacetylase [Ruegeria sp. TM1040]
MIQRLSPLEIMIRLVSFPTVSSETNLPLIEWTSEYLSAHGIEHHVWIDPEQPEKAGLYAHVGPKVEGGVV
LSGHTDVVPVEGQDWSSDPFEVVERDGKYFGRGCADMKGFDALALWALVEGNYTDLQRPLQLAFTFDEEI
GCTGAPPLIEEMQKYLPKAEAVIVGEPSMLKAVTGHKGAFAMATHVRGFEVHSSLMHEGVSAVMEAARIV
DWANHRNAENRARPQTEVAAMFTPPWTTVHVGKISGGTAHNITAGDCNFWMDFRVVPGESLADWQAAYEA
EIARIEAEMQRVRPEAGITLEKVFSVPGLAPETDGAAETLVRALTGDNARHVVSYGTEAGHYQVAGYSAV
VCGPGDIAQAHQADEFITVAQFEAGTKFMQDLLSRLSA
>gi|99080559|ref|YP_612713.1| peptidase M20D, amidohydrolase [Ruegeria sp. TM1040]
MPVRNRFAEMLPEITAWRHDFHEHPELMYDVHRTAGLVQERLNAFGCDEVVPGIGKTGVVGVIKGKSTAS
GKVIALRADMDALPIHEETGLDYASKTPGKMHACGHDGHTAILLGAAKYLSETRNFDGTVVLLFQPAEEG
GAGGKAMVDDGVMDRWGVQEVYGLHNMPGLPMGHIATRVGGLLASSDEFEIEVTGKGGHAAAPHDAIDTT
LVASQIVVSLHSIVSRNIDPIHRVVLTVGTFETDSTASNVIAHRAKLKGTVRTLDSENRALAEERVRRVA
EDTASAFGANATVKWTPGYPVTENTAQEVEYAVEAARAVAEKVDPDAAPIMPSEDFAYMLEARPGAYIFL
GNGDTAMCHHPAYQFDDCAIPLGCSWFVELCERRMPASSS
>gi|99080560|ref|YP_612714.1| peptidase M20D, amidohydrolase [Ruegeria sp. TM1040]
MPVKNRFAELLPEITAWRRDLHENPEILFETHRTSALVEEKLKAFGCDEVVTGIGRTGVVGVIKGKSSAS
GKVIGLRADMDALPIHEETGLEYASKTANAMHACGHDGHTAMLLGAAKYLSETRNFDGTVVVIFQPAEEG
GGGGKEMCDDGMMERWGIQEVYGMHNWPGRPVGSFAIRSGAFFAATDQFDITFTGKGGHAAKPQETIDST
VMASQAVLALQTIAARNADPVHQIVVSVTSFETSSKAFNVIPERVQIKGTVRTMAPEMRDLAEKRIKEIC
AGIAATFGGEADVTYHRGYPVMVNHDEQTEFAAKVARDISGQCDEAPLVMGGEDFAFMLEERPGAYILVG
NGDTAAVHHPKYNFTDDAIPAGCSWWAEIVEQRMPAA
>gi|99080561|ref|YP_612715.1| hypothetical protein TM1040_0720 [Ruegeria sp. TM1040]
MLKKVTLTVIALGSALAISAPAFAQSANPLVDKDLRLLRLDARVCDSSKQAMVNWAAKIDGHGSYAVPAY
PVGVDVDCGSSSNVLPIGQSFGFSDQKAADIAALNQCQATLPSGFDRCVIIGQSYKK
>gi|99080562|ref|YP_612716.1| hypothetical protein TM1040_0721 [Ruegeria sp. TM1040]
MYKPFALTAAMIATVFGFSTPTHAGNPGKVSSETPRVLRISKGICETSRQDMIGWARRIEGVGSYAVPRY
PAGQQVKCDGSDSVLPIGYSWGYDTQAEADAAAMAACTARLPSGFDRCVVIGQSFDRTSR
>gi|99080563|ref|YP_612717.1| glycosyl transferase, group 1 [Ruegeria sp. TM1040]
MSQIDLNQIDVIAPNFKKRYSGVTSTVIRLVPIQAREIAICAAAPDLPAEVPQVKPGALWTMARKGPSGA
RVWHARRNNEMVAGLLLKYLLGKRLKLLFTSAAQRRHTGFTRWLIRRMDAVIATSSRSASYLERNATVIR
HGIDCDLFQPVADRAALRRALDLPEDGLLVGCFGRIRPQKGNDLFVKAMIAACRANPEVRGLMMGRATAD
NAEFLQGLKDEVAAASLSDRILFRDEVAVEDVPRHFQALDLYVAPQRWEGFGLTPLEAMSCGVPAVATRV
GAFEELVIPGETGTLCDIEDVDKITADVIALLSDRDRLNEMATAAREHVAGTFRLEGEAAAIIAIYRKLL
GQNGAGA
>gi|99080564|ref|YP_612718.1| three-deoxy-D-manno-octulosonic-acid transferase-like [Ruegeria sp. TM1040]
MTDPSQVAPTLLYHLYRGASTLLAPLMWSKVAGKLRAHGLPEERVRERLGHATLQRPKGRLIWFHAASVG
ESLSVLTLIKRLGTMAPDLEFLITSGTPTSADLVAKRLPPRTRHQFPPLDTRAAVTRFLNHWQPDLGVFV
ESELWPQMLVRARDAGVPLVLLNARLSPKSVASWKKRHATARFLLDQLALMLTQNSQTAINLKAIGADPT
RLRAGSNLKALSEPLPVDQAILEDVRDAIGARPVWVASSTHEGEEEVVLEAHRALLADHPDLLLLLAPRH
PHRGDQIEAMIAEAGLTSIRRSRDALPRTSTQVYLADTLGEVGIWYSLCPRVFLGGSLREIGGHNPFEVM
QAGGAVLTGSGAYNFAESFAELIELGAAHEVQDASSLADAVRTWLDAPHTLDTARARARDFLARQSDQMD
DTVTALLDLLPSPT
>gi|99080565|ref|YP_612719.1| molybdenum cofactor biosynthesis protein A [Ruegeria sp. TM1040]
MTAPLIDPFARAITYLRVSVTDRCDFRCVYCMSENMTFLPKKELLTLEELDRMCSTFVRLGVEKLRITGG
EPLVRRDIMTFFRSMTRHLDSGALKELTLTTNGSQLEKHAQALYDAGVRRVNVSLDTLDEKKFADVTRWG
RLPQVLRGIDAAQAAGLKIKINAVALKGFNEDELFSMTQWCADRGIDLTWIEVMPMGDIGNESRLGQYWS
LKDVRKAYESGYQVTDLAERTGGPARYVRLEETGQKIGFITPLSHNFCESCNRVRLTCTGELYMCLGQED
MADLRAPLRDHPDTEAPLEEAIRAAINLKPKGHDFDYSRQTVDGQMPRHMSHTGG
>gi|99080566|ref|YP_612720.1| hypothetical protein TM1040_0725 [Ruegeria sp. TM1040]
MHLSSQVLQGSGSGVRIEPARPVSPDAPPEVETQELTTSGGTWTSPSDRQEVTTAALDTQPVREVAPQPV
APTQSSTPAPVVASEQSFVGQKTTVAGLGDPGRDGLWMETPLVSSRRNARLTAPNGKSVVVTLEPISGSA
GQGSRLSIDGMRALGLPLTELVELRVGPV
>gi|99080567|ref|YP_612721.1| hypothetical protein TM1040_0726 [Ruegeria sp. TM1040]
MTLDDALEALRAEIEPGRAEQMIAYHKQSREVLGVGNEVLNTLSRDWRAALDLNARVDLAAELWASDIFE
ARILAAKLLTQARIKPDAAAWDLLQSWVPDFDSWAIADHAASAISKRLVADPARLDTVEDWTTSEHMWTR
RAALMSTLPWAKFANPKPEQLAARERILGWAAGYVPDRDWFIQKAIGWWLRDLSKHDAERSKAFLAEHGE
SMKAFARKEAAKYLK
>gi|99080568|ref|YP_612722.1| glucosamine--fructose-6-phosphate aminotransferase [Ruegeria sp. TM1040]
MCGIIGVLGNHEVSPILVEALKRLEYRGYDSAGIATVNGGHLDRRRAVGKLVNLSDTLVHDPLPGKSGIG
HTRWATHGAPTVSNAHPHQAGCVAVVHNGIIENFKELRDELAAHGIRFVTETDTETVALLCEFYMRDGTS
AAEAARKTVARLEGAFALAFLFDGEEDLLIAARKGSPLAVGHGEGEMYVGSDAIALAPLTDQITYLEEGD
FVVLTRNSHEIWDAKGNIANREKRQIKLENTRVEKDGHKHFMAKEIAEQPVAVDKALKAYLDDSCAIELP
EGLDFKKIERLSLVACGTAYYACLVAKYWLETIARLPVEVDVASEFRYREPPVGPGTLALFVSQSGETAD
TLAALRYMRGKADVIAGLVNVPESSIARESDVVLPIHAGPEISVASTKAFTCQLTVLLMLALKAAQDRGQ
KLPAGMPADLRALPGLIHQSLASEAQIAAASRDLAGARDIIFLGRGALYPLALEGALKLKELSYIHAEGY
ASGELKHGPIALIDDSVPVIVMAPRDALFEKTISNMQEVMARGGRVILVTDAEGAREASEGTAEVITMPQ
VPDALAPILYAIPAQQIAYFTAIAKGTDVDQPRNLAKSVTVE
>gi|99080569|ref|YP_612723.1| UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [Ruegeria sp. TM1040]
MSTALVILAAGKGTRMNSDLPKVLHQIAHAPMLEHAMRAGGALDPERTVVVAGHEAEMVRAATAEIAPEA
TVVLQEEQLGTGHAVLQARAALEGFRGDVVVLYGDTPFVSAETLERMIEARSRADLVILGFEAADPARYG
RLIMQGESLEKIVEFKDASDAERAITFCNSGLMACNAEVMFGLLDQVGNDNASGEYYLTDLVELARAEGL
SVTAVSCPEAETLGINSRADLAAAEAVFQAHARAELLDIGVTLTAPETVHLAFDTIIGRDTVIEPNVVFG
PGVTVESGALIRAFSHLEGCHVSRGAKVGPYARLRPGAELAEDTHVGNFVEIKNAEIAAGAKVNHLTYIG
DASVGEATNIGAGTITCNYDGVMKHRTEIGARAFIGSNTCLVAPVTVGDEAMTATGAVITKDVADGDLAI
ARVQQTNKPGRARKLMDMLRAKKAAKAKG
>gi|99080570|ref|YP_612724.1| HAD family hydrolase [Ruegeria sp. TM1040]
MRTVIFDLDGTLADTSVDLLAAANHCFGVMGLGEMLTHPEDAKIALRGGKRMLAEGLTRAGQYREATVEE
YYPVLLDAYRDSIDTHTVMYPGAMAAVEALKGAGYGVGICTNKPEALAEDLMQRLGVRDAFASLVGADTL
PVRKPDPKPLFEAARRAGGTPEMCVLIGDSDTDRNTSRNAGVPSVLVTFGPAGDEMAALEPEALLHDYAD
LPAVVAGLIGVNDAR
>gi|99080571|ref|YP_612725.1| hypothetical protein TM1040_0730 [Ruegeria sp. TM1040]
MNSLIPSIALAVAIYSGAADAQDTSGLTAEPQVATGKFLTATEVKPILNATQSNWVAVREFNGQDLVYVT
HLWAWRCGLAQMELAINEGDYEVWDMPECHADEGSPGAIKSGDGDPYRSFELGSVQTIKVRLVYDDLTTA
EAAFERASIMTP
>gi|99080572|ref|YP_612726.1| DegT/DnrJ/EryC1/StrS aminotransferase [Ruegeria sp. TM1040]
MTLPMTERFTGNFTQQDPIPEEAIAAAVEVMRHGRIHRYNLAGEEQGETALLEQEFAQLMGAKYCLAVAS
GGYALATALRAVGVGHGDKVLTNAFTLAPVPGAIASVGAEPVYVDVTEDLTIDLDDLKAKAGEAKVLMLS
HMRGHLCDMDHLMEICTAAGVTVIEDCAHTMGASWNGTPSGRHGLIGCYSCQTYKHVNSGEGGLLITDDA
DVAARAIMLSGSYMLYSRHLAAPEPEVFERVKYETPNISGRMDNLRAAILRPQLRDLDAQVARWNDRYRT
LEAGVRDTPGLRVVERPEAEIYVGSSFQFLLLDWAPEAVQDVLSRCAARGVELKWFGGAEPVAFTSRYDS
WRYAPAQSLPKSDRILAGILDMRVPLTFSLEDCALIARIIRAEVSAVWQAQGQQV
>gi|99080573|ref|YP_612727.1| isovaleryl-CoA dehydrogenase [Ruegeria sp. TM1040]
MFNASMTFDLGEDVNALRDMVHRWAQERVKPMAQEIDQKNEFPAELWKEMGELGLLGITVDEEFGGAGMS
YLAHTVAVEEIARASASVSLSYGAHSNLCVNQIKLNGNAEQKAKYLPRLISGEHVGALAMSEAGAGSDVV
SMSLRAEKRNDRFVLNGNKYWITNGPDADTLVVYAKTDPGAGSKGITAFLIEKEFKGFSTSKHFDKLGMR
GSNTAELVFEDVEVPFENVLGEEGKGVRVLMSGLDYERVVLAGIGTGIMASCMDEMMPYMAERKQFGQPI
GNFQLMQGKIADMYTAMNTARAYVYEVAKACDKGTVTRQDAAACCLYASEVAMTQAHQAVQAFGGAGYLS
DNPVGRIFRDAKLMEIGAGTSEIRRMLIGRELMGHMS
>gi|99080574|ref|YP_612728.1| hypothetical protein TM1040_0733 [Ruegeria sp. TM1040]
MRVAYWFPVAMLALVLAVVGFRYGLIRQGITETDVITLYAQKYLGDHADSGALGSAQISDCAARPAERGH
LWTWLVVTCRPEGHTDAGSFRYRINWLGGLIEYIAPGEGAPRAPQT
>gi|99080575|ref|YP_612729.1| OmpW [Ruegeria sp. TM1040]
MKTLVSALALGVAAASFAAPAMAQSQGDWTFGVGIINVNPKSDNGTLAGAAATIDDNTQLSLTAEYFIRD
NLGIELLAASPFEHDIALGGSNIGSTKQLPPTLSLVYHIPTKGKVTPFVGVGVNYTTFFSEESSLGTLDL
DNSFGFAATVGADWQTSERGALRLNVRYMDIDTDARLNGAPIGKAEIDPVTVGVSYVHRF
>gi|99080576|ref|YP_612730.1| AMP-dependent synthetase and ligase [Ruegeria sp. TM1040]
MERLEKLHTTYAQNAGLNMTEKRIIPGLTATGGWDIPERLNMAAQAMDHPADKLAIIDLTSGTRRDVFHR
ELAVMVDGLARTLLQRVAPGDRVGVLLSQSPWCVAAHLAIWKIGAVSVPLFKLFQHDALANRVEDAGAKY
VLTDREGAAQLGDLAEPLITAEIGVEGDPVPFADTGSEDPAVIIYTSGTTGKPKGVLHGHRMLTGHLPGV
SISHDHLGQPGDCLWTPADWAWIGGLFDVAMPGLALGVPVVAARLDKFTPETCAEVMRLGEVRNVFFPPT
ALRMLKAAGQGLDGLRSVASGGEPLGAEMLAWGQRHLGVTINEFYGQTECNMTVSSCCADFPVRPGCIGK
PVPGHVVEVIDADGQPTREEGDVAVRRGSGSMMLEYWNRPDATAEKFHGDWLVTGDRGIWEAGYLRFVGR
EDDVITSAGYRIGPSEIEDCLMTHPAVATVGVVGKPDALRTEIVKAYVVLKPDHAPSEKELQDYVKERLA
SYSYPREIAFLDALPMTVTGKVIRKELKARAAGEGK
>gi|99080577|ref|YP_612731.1| hypothetical protein TM1040_0736 [Ruegeria sp. TM1040]
MKARSRSLSDQHVAWASRLFFHTCPTCGGAVPLSHLTGRGWPQIAECRGCGKHWRVALSSRAYLWRFVSR
AIPLVFFSLFVTSAALHFAFPELSYLAQNGQTKLRFVAFPFLVFSALASVLFFSRRLPLEEEPK
>gi|99080578|ref|YP_612732.1| propionyl-CoA carboxylase [Ruegeria sp. TM1040]
MKLQSKAMPSSEGFKANKAAHLSALAEISEAAEAARLGGGEKSRARHESRGKMLPRRRVANLLDPGSPFL
EVGATAAHGMYGGAAPAAGVIAGIGRVHGQEVMVVCNDATVKGGTYFPMTVKKHLRAQEIAEENNLPCVY
LVDSGGANLPQQDEVFPDRDHFGRIFYNQARMSAKGIPQIAVVMGSCTAGGAYVPAMSDVTIIVKEQGTI
FLAGPPLVKAATGEVVSAEDLGGGDVHTRLSGVADYLAEDDAHALALARRAVSHLNRTKPQGVNWQSPEE
PAYDPEEILGVVPGDLRTPYDIREVIARLVDGSRFDEFKPRFGETLVTGFAHLKGCPIGIIANNGVLFSE
AAQKGAHFVELCSQRKIPLVFLQNITGFMVGRKYENEGIARHGAKMVTAVASTNVPKITMLVGGSFGAGN
YGMAGRAYSPRFLWTWPNSRISVMGGEQAAGVLATVKRDAIERQGGTWSAEEEAQFKQPTIDMFAEQSHP
LYASARLWDDGIIDPRKSRDVLSLSLSAALNAPIEDTRFGVFRM
>gi|99080579|ref|YP_612733.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Ruegeria sp. TM1040]
MFNKILIANRGEIACRVMETARRLGVRTVAVYSDADRDAKHVALADEAVHVGHGPAPADSYLLQDEILAA
AKATGAQGIHPGYGFLSENPDFVEKVEAAGLAFIGPSASAIRKMGLKDAAKALMEEAGVPVVPGYHGDTQ
DAGFLAKQADSIGYPVLIKAVAGGGGKGMRLVEDPKDFNDALASAQGEATTSFGNPAVLIEKYIQKPRHI
EVQVFGDGTSAVHLFERDCSLQRRHQKVIEEAPAPGMTDEMRAAMGQAAVRAAEAIGYAGAGTVEFIVDG
SEGLRADGFWFMEMNTRLQVEHPVTELITGVDLVEWQLRVASGEGLPMQQDDLSITGHAFEARLYAEDVP
KGFLPATGTLSHLAFPEGVRADSGVRAGDTISPWYDPMISKVIVHGPSRAAALRQLDDALARTEVAGTVT
NLAFLGALTRHAGFAAGDVDTGLIARDLDSLAAAPEMRAEHKIAAAMVALDVIDPKPEMGFTLWADLHRS
VTLEAQGESFEASVELSGPDRQDWILDGDMFAVNRMGSGWVISGMALPPYAKSGDAITIFDGYGLSFKVV
DPLDRAAGAAGDGNLIEAPMPGLVKAVFAEAGAAVKEGDRLAILEAMKMEHSLLAARDGVVAEVLAQAGD
QVEAGAALVRLEEEA
>gi|99080580|ref|YP_612734.1| hydroxymethylglutaryl-CoA lyase [Ruegeria sp. TM1040]
MKDRVEIFEVGPRDGLQNEKRDIPVADKVALVDCLSRAGFSRIEVASFVSPKWVPQMAGSAEVLAGITKA
KGVRYAALTPNMRGYEDALAARADEIAIFASASEGFSQANINASIAESIERFTPILEAARHIDLPVRGYV
SCVTDCPYDGAVAPDKVAEVADRLFSMGCYEISLGDTVGKATPDKIAKMLIAVKDAVPVTRLAGHYHDTA
GRAIANIDASLALGVRVFDAAVGGLGGCPYAPGAAGNVATEVVHEHLTRLGYDTGLDGTVLQEAAAMARH
LRPEPTDA
>gi|99080581|ref|YP_612735.1| enoyl-CoA hydratase [Ruegeria sp. TM1040]
MYDTLLLTRDDRGVATLTLNRPEKHNAMSGLMLQELQDAARALAADRSVRVVVLTGAGKSFCAGGDLGWM
QAQMEADAETRGREARVLAEMLNLLNTLPQPLIGRLQGNAFGGGVGMASVCDVAIGVDSLKMGLTETKLG
LIPATIGPYVIARMGEARARRVFMSARLFDAAEAVDLGLLSRAVPADSLDAAVEAEVTPYLDCAPGAVAD
AKALARALGPRIDKSTIDFTISALVTRWESAEAVEGINAFFDKRRPSWRDK
>gi|99080582|ref|YP_612736.1| NADH dehydrogenase subunit A [Ruegeria sp. TM1040]
MEEMLREYLPILVFLAVAIGLGLVLILAAVVVAVRNPDPEKVSAYECGFNAFDDARMKFDVRFYLVSILF
IIFDLEIAFLFPWAVGFKDISDAGFWSMMVFLGVLTIGFAYEWKKGALEWE
>gi|99080583|ref|YP_612737.1| NADH dehydrogenase subunit B [Ruegeria sp. TM1040]
MAGANTAGVDKEMVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAER
FGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP
VDIYVPGCPPTAEALLYGLMQLQRKIRRTGTLVR
>gi|99080584|ref|YP_612738.1| NADH dehydrogenase subunit C [Ruegeria sp. TM1040]
MIEALQDLGHQIEAKRPECVLSWDIAHGELNIDVKPANIAGLVEFLRVDSACRFSTLVDITAVDYPERTK
RFDVVYHLLSMYQNQRIRLRAAVREEDMVPSIVDVHPSANWFEREVFDMFGILFTGHPDLRRLLTDYGFR
GHPLRKDFPTTGYTEVRYDEAQKRVVYEPVKLVQEYRQFDFMSPWEGAEYILPGDEKEIAK
>gi|99080585|ref|YP_612739.1| NADH dehydrogenase subunit D [Ruegeria sp. TM1040]
MDGSKFDDAQTGEQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQ
NLPYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRAQLIRVLYSEIGRILNHLLNITTQAMDVGALTPPL
WGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDELLDDIDLWAMEFPKVMDDIDGLLTENRIFKQR
NCDIGVVTEDDIQKYGFSGVMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSL
SIIRQAIAKLREATGDVLARGKLTPPKRGDMKTSMESLIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVY
LVADGSNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAIIGTMDIVFGEIDR
>gi|99080586|ref|YP_612740.1| hypothetical protein TM1040_0745 [Ruegeria sp. TM1040]
MTLRAFIAGASLCLIGQTALAEKSLADLVAESVGYVQVRDGVILIEDDYDEYICRMTASDAAFDAKAAGQ
EIPAGALSSTCILLEEFDKSGTPAFAEKSLADLVAESVGYAHVRDGVVMIEDDYDEYVCRMNASDAAFDA
KAAGQEIPAGSLTSTCILLEEFDK
>gi|99080587|ref|YP_612741.1| NADH dehydrogenase subunit E [Ruegeria sp. TM1040]
MLRRLHHEQPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWISKPAIEYVADMLGMAYI
RVLEVASFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLVAICKDKISAKPHTLSEDGKFSWEEVECLGS
CANAPMAQIGKDYYEDLTAASFTKLLDDLAAGKPVVPGPQNGRYAAEPKAGLTSLTEYEAGKPQYNASAE
LATEIGDGVKRIQGDEVPLLTPWVGKDGVVAGRAAADPTPPAPERPQPAAKQAETAKKKAPAKPAVKKSD
AATPAQPEAAAAKVTEPKADLEEQAPETLTAAREGGADDLKLLKGVGPKLEQTLNELGFFHFDQIAKWTE
AEVAWVDARLKFKGRIERDGWIEQAKQLAAGEETEFAKSAKKDGRYKD
>gi|99080588|ref|YP_612742.1| hypothetical protein TM1040_0747 [Ruegeria sp. TM1040]
MTQDEQDKAIAAKGRHISLVIAGTMVAWLLLSLLVGPAIGLPGRYALLFDFAALAAMIYAGVNIIQLWRM
RQNSQR
>gi|99080589|ref|YP_612743.1| NADH dehydrogenase I subunit F [Ruegeria sp. TM1040]
MLKDQDRIFTNLYGMHERTLAGAQKRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGFPTGLKWSFMP
KESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHTCYIYLRGEYIREREALQAAI
DECYDKGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALIESLEGKKGMPRMKPPFPAGAGLYGCPTTVN
NVESIAVVPTILRRGAEWFAGFGRQNNAGTKLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDN
LLAVIPGGSSVPCVRGEKMRDAIMDFDYLRGELGSGLGTAAVIVMDKQTDIVKAIWRLSKFYKHESCGQC
TPCREGTGWMMRVMDRLVRGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA
QKSGRMGAMAAE
>gi|99080590|ref|YP_612744.1| hypothetical protein TM1040_0749 [Ruegeria sp. TM1040]
MMMNSRFPLSLMLVASLGLVACGQSRDDKRMRFDGIVFRTSAKPIDKKETLLNFRVEVRDALQSQRGALA
AATHEATRYCIQNYGTSRFDWTNITPDSEGSYQIQLDNRDAIFTGRCKP
>gi|99080591|ref|YP_612745.1| hypothetical protein TM1040_0750 [Ruegeria sp. TM1040]
MSKTYDLSTADTFSAPHVLMMTALAALSAFMLALGASAGEAKPSLRDVQEIEDPLFAVAVASEVAERCER
IAPRTLKGLNQLYQIRARANALGYSDTEIKSYIKSDQEKSRMRAKGERLLRQNGVKLDQPETFCAYGLAE
IEKNSAIGVLLRAK
>gi|99080592|ref|YP_612746.1| NADH dehydrogenase subunit G [Ruegeria sp. TM1040]
MSDLRKINIDGTEIEVDGAMTLIQACEQAGIEIPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQV
RDLRPGPEGQAPQVKTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRFREPKR
AVDDLNLGPLVGTAMTRCISCTRCVRFTTEVAGISQMGQTGRGEDAEITSYLNETLDSNLQGNIIDLCPV
GALTSKPYAFTARPWELTKTETIDVMDALGSNIRVDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLR
RQRLDRPYVRVDGKLKPATWPEALEAVATAMKGKKVAGLIGDLVPVEAAYALKGLIESLEGKVDCRTDNA
RLPIGNRAGYVGTATIEDIDTARDIILIGTNPRDEAPVLNARIRKAWLKGANVKLVGPAADLTYDYEHLG
TDRAALDALSAIEDAIVIVGQGALREADGLAVLAKAQSLGKLLVLHTAAARVGAMDIGAVTEGGMAAAID
GAEVIYNLGADEVEIDAGAFVIYQGSHGDRGAHRADVILPGAAYTEENGLFVNTEGRTQLSMRAGFAPGE
AKENWAILRALSAELDAKLPYDSLAQLRKALIKDVPHLAKVDQVVANEGEALPAEKLGKADFLPAVNDFY
LTNPIARASQLMAELSAQAKARRETALAAE
>gi|99080593|ref|YP_612747.1| putative lipoprotein [Ruegeria sp. TM1040]
MIRTALISLLGLNLIACTDVTGDEVSRAAPDYLGVNTSLLDGDLVQFHVTMDRVGALEDLNDYADCAAAQ
YALIRGYGFARHVRTKTKQEAGIWEADAVYTISPALPRGLRTLDAEVVVQDCKANGIPTV
>gi|99080594|ref|YP_612748.1| NADH dehydrogenase subunit H [Ruegeria sp. TM1040]
MAEFFNTPGGIAVIILAQTLAVVAFVMISLLFLVYGDRKIWAAVQMRRGPNVVGVYGLLQTVADALKYVV
KEVVIPAGSDRTVFILAPLTSFVLAMIAWAVIPFNDTWVLSDINVAILYVFAVSSLEVYGVIMGGWASNS
KYPFLGSLRSAAQMISYEVSIGLIIIGVILSTGSMNFGDIVRAQDGDAGLFNWYWLPHFPMVFLFFISCL
AETNRPPFDLPEAESELVAGYQVEYSSTPFLLFMAGEYIAIFLMCALTSLLFFGGWLSPVPFLPDSPLWM
VAKMAFFFFLFAMVKAITPRYRYDQLMRLGWKVFLPFSLIWVVFVAFAARFEWFWGAFARWSTGG
>gi|99080595|ref|YP_612749.1| NADH dehydrogenase subunit I [Ruegeria sp. TM1040]
MTQIDYTRAAKYFLLQDVWQGFKLGLKYFFAPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIACKL
CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETREELFYDKD
KLLANGERWEAEIARNLELDAPYR
>gi|99080596|ref|YP_612750.1| carboxymuconolactone decarboxylase [Ruegeria sp. TM1040]
MAQAQEMAKALNPALESFSPKGFEALWPTMPKEVMEMMFGNTVNKDGLDAKTRLLLTLAGLTMQGAQADT
AVRQTVRHALAAGAKKQEIVETIGQMSVFAGIPAMTRAMDLAQEVMDDKGDDET
>gi|99080597|ref|YP_612751.1| NADH dehydrogenase subunit J [Ruegeria sp. TM1040]
MSVFAFYLFAISAITGGLFTVISRQPVHSVLWLILAFLSSAGLFVLLGAEFVAMLLVIVYVGAVAVLFLF
VVMMLDVDFAELKAEMARYTPLALLIGLVILMQFVIAYGSWESAHSVAENLSQPIPTDRHNTEALGLILY
DQYFLLFQLAGLILLVAMIGAIVLTLRHRQDVKRQDVLAQMYRDPAKAMELKDIKPGQGL
>gi|99080598|ref|YP_612752.1| NADH dehydrogenase subunit K [Ruegeria sp. TM1040]
MIGIEHYLTVAATLFVIGIFGLFLNRKNVIILLMSIELMLLAVNINLVAFSSFLGDLVGQVFTLFVLTVA
AAEAAIGLAILVCFFRNRGTIAVEDINVMKG
>gi|99080599|ref|YP_612753.1| NADH dehydrogenase subunit L [Ruegeria sp. TM1040]
METILLFAPLVGAVICGFGHKIIGEKAAMWTATGLLFLTALLSWIVFISFDGETRIIEIFRWIESGSLST
SWSIRLDRLTAIMLIVITTVSALVHLYSFGYMDHDPQWKEGESYKPRFFAYLSFFTFAMLMLVTSDNLVQ
MFFGWEGVGVASYLLIGFYYRKPSAGAAAMKAFIVNRVGDFGFSLGIFALFFLTDSINLGTIFAATPDLA
EMTVSFLWTEWNAANLIAFLLFVGAMGKSAQLILHTWLPDAMEGPTPVSALIHAATMVTAGVFLVCRMSP
LMEVAPEATAFITVLGATTAFFAATVGLVQTDIKRVIAYSTCSQLGYMFVAAGVGMYSAAMFHLFTHAFF
KAMLFLGAGSVIHAMHHEQDMMNYGGLRKKIPYTFWAMMIGTLAITGVGVPVWIMKLGEIPIGFAGFHSK
DAIVESAYAAGSAYGFWMLVIAALFTSFYSWRLMFLTFYGKPRGDKHTHEHAHESPMVMLIPLGVLALGA
IFAGMLWYKSFFGHTDQVAKFYGVPYAEASAEAHGDDHASDDHGADASHGGGDKEAEHHYVFAGEPGEGA
LYMAPDNTLLDDAHKVPYWVKTSPFMAMLVGFLVAYWFYIVNPELPKRLSQQQRPLYLFLKNKWYFDELY
NVVFVKPALALGRFFWKKGDGKTIDGFLNGVAMGIVPFFTRLAGRAQSGYIFTYAFWMVLGIAALVTWMS
IGGGSH
>gi|99080600|ref|YP_612754.1| NADH dehydrogenase subunit M [Ruegeria sp. TM1040]
MDNILSIVTFIPALAAAVMALLMRGDDEAAQRNAKYVALMATSITFIVSLFIYFQFDPSDTGFQFVEERD
WIFGLKYKMGVDGISVLFVMLTTFVMPLTILASWSVTNRVKEYMIAFLVLETLMLGVFMALDMVLFYLFF
EAGLIPMFLIIGIWGGKDRIYASFKFFLYTFFGSVLMLVAMVAMYFDAGTTDIVKLLSHEFSYEGFNVLG
IHVLGGMQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVG
SEVMTDVILWMSAIAIVYTSLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMLSHGFIS
AALFLCVGVIYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTLMGAFQENTWVA
FVATTGVIFSACYALWLYRRVVFGDLIKESLKAIKDMNAREKWIFAPLIVMTLLLGVYPSVVTDVIGPST
EALVQSVNTAVADAGPLWDAAEVDVAATNSH
>gi|99080601|ref|YP_612755.1| NADH dehydrogenase subunit N [Ruegeria sp. TM1040]
MQADLSVILPEIILAVFSMAALLGAVYTVKDKLAPMLVWVTAALMVVLGIWIGTSGSGATEAFDGMIVND
AFARFAKVAILFSAAAVMVMGQDYMSKRGMLRFEYPILIALSVIGMMVMVSAGDLMALYMGLELQSLALY
VVAALRRDSVKSTEAGLKYFVLGALSSGLLLYGASLVYGFAGTTKFAGIIEVAQHGEVSIGLLFGIVFLI
SGMAFKVSAVPFHMWTPDVYEGAPTPITAFFASAPKVAAMGLFARVLHDAFGHAIEDWSQVVALLSVLSM
FLGAVAAIGQTDLKRLMAYSSIAHMGYALIGLAAGTALGVQALLIYMSIYVAMNIGTFAFIMMLHRDGKP
VTDIRALNQYAKREPGRALGMLVLLFSLAGVPPMLGFFGKFFVLRAAVEADMAWLAIAGVIASVIGAYYY
LRIVFFMYFGAEGDDVETSRSPVLLAFFTVGAALMLVGVVTTFGVEGAAASAAAMLVN
>gi|99080602|ref|YP_612756.1| biotin--acetyl-CoA-carboxylase ligase [Ruegeria sp. TM1040]
MTDWPIGYGRRVLAEVDSTLDEAARLAPALSGPEWILALRQTKGRGRRGRAWTDPKGNFAGTLVYRPEGA
PDQIALRSFVAALALYDAVETVTGRTTGLALKWPNDVLLNGGKLAGILLESSGVKSGVDHLAIGIGVNLA
ETPMKEWLEPGAVWPVSLQSETGVRVDPETFLSALALAFARYEDQFTTYGFGPIRELWLSRAAKLGEVIT
ARTAREETSGTFETIDDAGNLVLKTAKGIVTIPAADIFF
>gi|99080603|ref|YP_612757.1| pantothenate kinase [Ruegeria sp. TM1040]
MLLAVDCGNTNTVFALWDGDQMIGHWRTSTEWQRTADQYYVWLSTLMNLQGIKAQITDMIISSTVPRVVF
NLRVLSDRYFNTRPLVVGKPECALPVDVRVDEGTTVGPDRLVNTVAGYEKYGGDLIVVDFGTATTFDVVA
ADGAYVGGVIAPGVNLSLEALHHAAAALPHVDISKPQNVIGTNTVACMQSGVFWGYVGLVREICDRIKAE
SGVPMKVISTGGLAPLFQQTADLFDAYEDDLTMQGLRRIHEHNKDIGNHA
>gi|99080604|ref|YP_612758.1| beta-lactamase-like [Ruegeria sp. TM1040]
MSSERLIYLPLGGAGEIGMNAYVYGYGAPGKERLILVDLGVAFPDMDTTPGVDLIMPDISWLAERADQLE
GIFITHAHEDHIGAVAHLYSRLNVPVYARAFTANIARRKMEEQGHDPDSVVTISPWPEVTKLGPFTIGAV
PISHSIPESGGLVIDSPAGRVIHTGDFKLDANPIVGEAFDPDLWAEISKDGVQALVCDSTNVFSPHAGRS
ESELGDNITKLIAEASGMVAATTFASNVARVKTLAQAGERAGRSIVLLGRAMRRMIEASIETGVLSDFPK
VIQPEEAADIPRENLMLITTGSQGERRAATAQLARGKYRGMELKEGDLFLFSSKTIPGNEKGVIWIINQF
SEKGVDVVDDSSGLYHVSGHANRPDLEQMHDIVKPKILIPMHGEHRHLRQHARLGEEKGIASAIAVNGMM
MDLTGDAPKVADYIDTGRTYLDGSVKIGAMDGIVRDRIRMALNGHVVITAILDEEDEPLGEPWVDLKGLA
ETGQSNAALAEIMEEDLNQFLMRAGKKTLKDDDKLEQELKRIARQTSQSEIGKKPEVTVIVSRMR
>gi|99080605|ref|YP_612759.1| triosephosphate isomerase [Ruegeria sp. TM1040]
MARKLAAGNWKMNGTGEHLAELENLAQGDLPEGVDVLICPPATLISRAADRAGDIAIGGQDCHAKTSGAH
TGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGETLEEREAGTTLEVVG
AQLAGSLPDGVTAENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVARFGAAGKDLPLLYGGSVKPG
NAAEIFGVSNVDGALVGGASLKAADFGPIIAALAAS
>gi|99080606|ref|YP_612760.1| HesB/YadR/YfhF [Ruegeria sp. TM1040]
MFAIPGKQAVTMTPRAAAQISKLMENAGHAGLRIGVKKGGCAGMEYTMEYVDVADPNDEVVEQDGARVLI
APMAQMFLFGTEIDYETTLLESSFKFNNPNVAEACGCGESISFKVGE
>gi|99080607|ref|YP_612761.1| hypothetical protein TM1040_0766 [Ruegeria sp. TM1040]
MTDASEPLEGTPLIAPSSVSHALYEPVVDACRTVFDPEIPVNIYDLGLIYTVEISDENDVKIIMTLTAPG
CPVAGDMPGWIVDAVSPVPGVKSVDVELTWEPPWGMDMMSDEARLELGFM
>gi|99080608|ref|YP_612762.1| hypothetical protein TM1040_0767 [Ruegeria sp. TM1040]
MDAVWSLWWVWGVIALGLAIVEILLPGFIFLGFAIGAAAVAVILLTPLSLTLPVLLLVFAVLSLVAWLGL
RRIFSLPNGQVKTFDTDIND
>gi|99080609|ref|YP_612763.1| SPFH domain-containing protein/band 7 family protein [Ruegeria sp. TM1040]
MTEQDIINALSGGLLYIVAALFVILVILKGVRIVPQSEKYVVERFGRLKSVLGPGINFIVPFLDVVRHKV
SILERQLPNASQDAITRDNVLVEIDTSVFYRILEPEKTVYRIRDVDGAISTTVAGIVRAEIGKMDLDEVQ
SNRSQLIGEIKRSVESAVDDWGIEVTRAEILDVNLDQATRDAMLQQLNAERARRAQVTEAEGKKRAVELA
ADAELYAAEQTAKARRIEAEAEAFATQVVAQAIADNGLSAAQYQVALKQVEALNALGNGDGKQTIIVPAQ
AIEAFGDAFKMLKAK
>gi|99080610|ref|YP_612764.1| SSU ribosomal protein S6P modification protein [Ruegeria sp. TM1040]
MSTDDPNQNLRLGWEEWVRLPELGLPALRAKVDTGARTSALHATDIETFGPAKAPKVRFTVHPIPGRDDL
LIPCSAAIKDRREVTSSNGDREMRYVIETNLEIGGQVWPVEVTLTDRRGMALHMLLGRQALTENISVVPS
ERYCQPELDYSVYATPAIRKKAPNRALRIAVLSREDNYSTRRLVEEGERRGHSVEVIDTTRCYMSINALA
PEIHYDGKRLPRYDAVIPRIGASVTQYGTALLRQFETLGTYCVNGSDGITASRDKLHAHQMLARHKIGMP
ATAFAASPKDTNALIDIVGGAPLIVKLLESTQGKGVVLAETKKAAESVITAFRGLKANFLVQQFVKEAAG
VDIRCFVVGSKVVAAMKRSGAEGDFRSNLHLGGSAVSVRITKEERATAIRAARCFGLGVAGVDLLRSETG
PKVLEVNSSPGLEGIEKTSKKDIAALIHDEIEANVRPTPLRTRKALGDAAE
>gi|99080611|ref|YP_612765.1| queuine tRNA-ribosyltransferase [Ruegeria sp. TM1040]
MAELFNFEMTATDGKARTGVIHTPRGEIRTPAFMPVGTAATVKAMMPESVRATGADILLGNTYHLMLRPT
AERIDRLGGLHKFMNWDRPILTDSGGFQVMSLAGLRKLTEKGVTFKSHIDGSRHELTPERSMEIQRLLGS
DIVMCFDECPALPADRDRIAESMRLSMRWAERSREAFGDRPGHALFGIQQGGLEQDFREESAEALTKIGF
DGYAVGGLAVGEGQEAMFGCLDYAPDMLPVDKPRYLMGVGKPDDIVGAVSRGIDMMDCVLPSRSGRTGQA
FTRHGVVNIKNARHQDDPRPLDENCSCPACSNYSRAYLHHVFRSNEMISGMLLTWHNLHYFQDIMAGMRE
SIAAGTFEAWQKTFHETRAQGDIEPL
>gi|99080612|ref|YP_612766.1| hypothetical protein TM1040_0771 [Ruegeria sp. TM1040]
MIRPAVWLIAASLGPSACIAPLPLPEDAKTIGIQSAAMERKEAVAPRTVFVADSAVTEIAGASCEVRQGA
RQHHKVKTPAKLAFAVTPGT
>gi|99080613|ref|YP_612767.1| hypothetical protein TM1040_0772 [Ruegeria sp. TM1040]
MKRISLVALMCTLSACMQHEPLDTSPESVRFSSRIAQQNVCEYAIVEIRTLTQSDGTTVEAKGVPCTING
IGYSAGTVRPARVSLPNYLGKTEDASVTCRLNGADVNQQISAINATVEKINSTQSSGGGLAVALAFASVK
GVIKSSRDATNDKFRYPGRIEVNLQPVKK
>gi|99080614|ref|YP_612768.1| NADH:flavin oxidoreductase/NADH oxidase [Ruegeria sp. TM1040]
MSQKLFAEPTAGALELTTRLVIAPLKHDRAGDTTAEVLERYAEYYAQRASAGLIITEGSQISAEARGYIQ
TPGIHTAAQAAAWRKVTDAVHAKGGKIVIQMWHVGRSTHAGFEPTATPEALTVGGIQRVIEDRVQAATYA
KEAGFDGVELHVANGCLLEQFRKDRVNTRSDAYGGSAENRARLLFEVLDALATVWEPGRIAVRLAPFASL
TMSSIAPPWPIPPR
>gi|99080615|ref|YP_612769.1| Oye family NADH-dependent flavin oxidoreductase [Ruegeria sp. TM1040]
MARLGDFEILRQLYTGTYMANNGYDRETALARAKSGAVDLAAFYLEPDLVARLKAEAPLIEGDQATFCGG
GDNGFTDDPTLELQAAE
>gi|99080616|ref|YP_612770.1| Lon-A peptidase [Ruegeria sp. TM1040]
MQEPLNSSYPVLPLRDIVVFPHMIVPLFVGREKSVHALEEVMSDDKQILLSSQIDPSEDDPDQDGIYRTG
VLANVLQLLKLPDGTVKVLVEGHQRVKITEFLDNETFFEARAEALSEMPGDVTTTEALLRAVGDEFERYA
KVRKNIPEEALTAVGETTEPAKLADLVAGHLGIEVERKQELLETLPISERLEKVYALMQSELSVLQVEKK
IKTRVKTQMEKTQREYYLNEQMKAIQKELGDGEDGAGEIAELEEKIEGTKLSKEAREKADAEIKKLKNMS
PMSAEATVVRNYLDWMLSIPWGTKSRVKKDLGRAQDILDKDHYGLEKVKERIVEYLAVQQRSAKLKGPIL
CLVGPPGVGKTSLGKSVAKATGREFIRISLGGVRDESEIRGHRRTYIGSMPGKIIQALKKAKTTNPLILL
DEIDKMGQDFRGDPASAMLEVLDPEQNSTFVDHYLEVEYDLSNVMFLTTSNSYNMPGPLLDRMEIIPLSG
YTEDEKREISKQHLISKQVKNHGLKAKEFELTDEALTEIIRTYTREAGVRNLEREIAKVARKALTSIVKK
ETESVKVTPENLGDFLGVAKYRYGLAELEDQVGVVTGLAYTSVGGELLSIEALRLPGKGRMKTTGKLGDV
MKESIEAASSYVRSVSPRLGIKPPRFDKWDIHVHVPEGATPKDGPSAGLAMVTSIVSVLTGIPVRKDIAM
TGEVTLRGNALAIGGLKEKLLAALRGGIKTVLIPKENEKDLPEIPDNVKEGLEIIPVDHVSEVLKHALVS
QPEAIEWDEEAEEAAAAAAALKGGDASGATAH
>gi|99080617|ref|YP_612771.1| phage integrase [Ruegeria sp. TM1040]
MPDISIGRFRGGFCVYWHEGGKRRRYSLKARTREEAEPEAIDVYRRETLDQRRGRDTVADIWEAYRQDLG
EKPTAKTMGYTGKAVLAHFGAYRPDQITTSLCRKYVTNRTAEGKSQGTIHTELGHLRSAMRFAVKERIID
KAPSIERPAKPTPKERYLEKEEIAALIDAASAPHIALAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLR
LDDSKTRKGRAIVPMNSGIRAALQTAHDAALSDYVVEYAGGKVKNIRKGFEAACRRAELDGVTLHTIRHS
SAVAMVSNGVPLEKVAQYLGHSNVAITYQTYARFAPDHLQDAAEILDFVQIREA
>gi|99080618|ref|YP_612772.1| hypothetical protein TM1040_0777 [Ruegeria sp. TM1040]
MVADIRGWGYLTGKGQALALTEREAEQAQKKTAQFIADAMNEKFERDTLANQVEDCARTCAEQAEQILNL
QNACKAVLPLMQAADREEVTDVQDWHAAEALIHAALEGSQ
>gi|99080619|ref|YP_612773.1| hypothetical protein TM1040_0778 [Ruegeria sp. TM1040]
MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTLANQVEDCARE
CAKLAEEIQRLQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLEDNRRVVLRSLPEEHSYDYTTA
DDTYLAAWKIKRWMQFPDANFIAPDTIVHTTVERIEQIKEEARNAALEEAAEVVARIKKPTIPPMFMGQT
RAEAYDMGQHNACESKAELIRTLKSEPAPHPDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSV
QKAADNLAKGLRSAGYFIPSSIIFDVMVQKKSAS
>gi|99080620|ref|YP_612774.1| hypothetical protein TM1040_0779 [Ruegeria sp. TM1040]
MKSLKVLIGCATSCVALDAFLARGHDAWQCDLLHADKPTNRHIQDDIRNVLGWGWDLLLVSNPPCTRLCN
SGVRWLTKPPTGRTLAEMWADLDKGADLFSDCLNAPIPHVAVENPVMHKHARERIRNWIKPQIVQPWWFG
DPAFKATGLYLRNLPDLVPTNKLTPPRPGTDDHKRWSAIHRAPPGPDRWKFRSKTFAGMAAAWADQFGSW
AAEHTGEAA
>gi|99080621|ref|YP_612775.1| hypothetical protein TM1040_0780 [Ruegeria sp. TM1040]
MKDQIEAPTTDIAILAGQALQEATAPERVKEIIDKKIGETVKGAIESAMRSYSDFGRTLEKKIEEALSIS
NLDLPSYNNMVCAMVQNQVEAVASELIQGRLQADINEMLGVAPQSIKLSEIVNQMRQSHEEDGGYGEVVT
CIVEEIHVDDSDFWGPRWKVYLDDTTHYSHSDKGSCEVVLEVWHGIKQDRDQSNHEITTGTISQIQEYSG
VITSKGGKAGFSMRRPYGLTQKLLAMYAAETVIEVDEDEVVTSVGDY
>gi|99080622|ref|YP_612776.1| hypothetical protein TM1040_0781 [Ruegeria sp. TM1040]
MKASGPKMTKLRTAAKGQPCTLRLPCCNNNPETTSLCHIRAFGWAGTSEKPMDFLAVFACSDCHDALDRR
RNGELWGWDDVTRALGETLIAQHRMGNLIVA
>gi|99080623|ref|YP_612777.1| hypothetical protein TM1040_0782 [Ruegeria sp. TM1040]
MYYRARWENGCLRLLSNQGPELTDGELVTVSIDRDRSGKSHRHQFAWIKDAWASLPEAVMHMPWAETPEA
LRKHALIATGFSQVYTLDCGANATARRVKEALLAAEVKAHGYALGQVQGPVVRVWTPESQSVRAMGGDRF
KESKNAILDWVSAQIGVAPEDLGKQAA
>gi|99080624|ref|YP_612778.1| exonuclease [Ruegeria sp. TM1040]
MEQGTPEWHEARLGRVTASRIADVMMNPTTAGFQNYRSQLVCERLTGTPTETFTSAAMQHGTETEPQARA
MYTLATGLSVNEVGFVPHPLIEMAGASPDGLVGELGLVEIKCPQPTEHIRVLTGGDIKKGYVLQMLWQME
CTGREWCDFVSFNPDLPDDLQLYIQRVEYDSEKAREITDAVRSFLTSVDDTFAKLRTLQEAA
>gi|99080625|ref|YP_612779.1| ERF [Ruegeria sp. TM1040]
MNEVTQIRHQDDQLPADPMVSMIERVATDPNADIDKLERMLEMKERHDAQNAKAAFSSAFARASAEFPTI
PLNGKGHNNKPYATLEDITKLTRPVLSKHGLALTFSVDVGDQVVVTAKLMHEQGHSESTSMALPRDTSGS
KNAVQAVGSTQKYGQRYTAQAILGLSLGMDDEDDGAGATGRETITPTQIEELRRLIEKAGVTPETVCTAA
KVADLSSIAVADFQPLTKKLNATIKAKEAK
>gi|99080626|ref|YP_612780.1| hypothetical protein TM1040_0785 [Ruegeria sp. TM1040]
MSHLSNVTPIRTPAAKSTTHATHTRRRGSHDWSAGPWKHPAPTNGGPDRKNWTLTLTFWALMIFVAILTA
VSVGASLSNPL
>gi|99080627|ref|YP_612781.1| hypothetical protein TM1040_0786 [Ruegeria sp. TM1040]
MRDTAFQTIYLGDDIECAAQVAFFVEREGADTACGFSGGHDVTADVLSVQMEDPETWELELLSREEVIRR
FGKSDLLRAERELEDTMSEALNRGDAIISDEDAIFEPRDFEFAWPIAAE
>gi|99080628|ref|YP_612782.1| hypothetical protein TM1040_0787 [Ruegeria sp. TM1040]
MNVIKADEILTARTIEAINRLSSVTQEADKVLAHVPVAYPSGALACVELQRHAEHCWVSDMGRGLVEAEF
MNADSYFPSIARTLAKDNGVDYDGHAIFAIKVPLAHLEAAIVTVANTSSQAAAEAVRRSIESKAADTHAE
VFERIVKVFGAHNVARKAEVSGRHSSWEAHNVVSLPSRRLAIFEHITAHPHSISSKFLMFSDIRRAEQGH
SLNAVINSISSLSDRGQIISDVANVVEIGETDDAFRELARVA
>gi|99080629|ref|YP_612783.1| hypothetical protein TM1040_0788 [Ruegeria sp. TM1040]
MPIQYSLADRIFQTSKDLLPPFEWKPTTNGSGHEHRRGIECRVRIGGSMPRGVFFRIALFPRFRLRATFQ
LECERDSGRAHIPLYRLDVDPASAHQNKLFGPPEVHGIFLPQGKNHEHIFYDSLREDGGLRLHGAVQARP
VEADFTEFSEALAYVCDTLKINNRGDLPPPGDQGVLL
>gi|99080630|ref|YP_612784.1| putative phage repressor [Ruegeria sp. TM1040]
MTPYRDNTPHLARDNHLLFTELARDYCLSMPISFKEALDRAQDATGLSMRKLADKAGVSYEQLKKVRQGK
SQTTNAEDALKIATAVGVSFEQFMSGEFDASPTISIAGKVGAGAQVPVFDAYEKGDGPQVECPPGIGPHG
VVAVEVEGDSMEPVYSAGDLLFYSRNGHDSVPDDVIGYKCVCEDADGMGWVKQVKAGDEPGLFHLISLNP
TGANMWNVRLKWAARVRLHWPAEFARKK
>gi|99080631|ref|YP_612785.1| hypothetical protein TM1040_0790 [Ruegeria sp. TM1040]
MRLPSMANQRTYLHTLIRGLVVRHFPGKQNCAAREIAEFWAGHALEDSEVDFGGFSRKMNGSRAFDVYDL
FALIQITGDKRPIAAFGDVQEGNVPPSIPMPVLAARAAKESGEAVSAAIEGGDLGEIAMEAGEAEAAHRE
IRENAEAAIRASSGGVTPIRKA
>gi|99080632|ref|YP_612786.1| hypothetical protein TM1040_0791 [Ruegeria sp. TM1040]
MLDDPLTAIYAKVQAQQEAEARKIAAIAAHIGHNGGPRIEAPFGIDAPWLRYADDAELSRLATLEPRIER
KRLILADTIAERTRIMNRCIRRMRRAAGKD
>gi|99080633|ref|YP_612787.1| hypothetical protein TM1040_0792 [Ruegeria sp. TM1040]
MGKRSNFDRIPRDFYPTPPEAVAPRIPHIADCRYFAEPCAGDGALIGALSGVAECLWYSDIEPQFKAPCV
DALTLVDEFKDCDYIITNPPWDRKILHPMIEHFSAMRPTWLLFDADWVHTRQAAPFMPMLRKVVSVGRVK
WIKDSPHTGKDNCAWHLFDQGGSGPCEFYGRAA
>gi|99080634|ref|YP_612788.1| endodeoxyribonuclease RusA [Ruegeria sp. TM1040]
MKPTTIRLSWPRPALWDNEKASHMVKAAAKRTQRKEAWALALEAKWPRDPAAVLTFRFCPPDRRRRDTHN
LPATMKAAIDGIADAMKVDDVGFRCVFPTEFGPVEKGGAVYIEIGGQP
>gi|99080635|ref|YP_612789.1| hypothetical protein TM1040_0794 [Ruegeria sp. TM1040]
MSAVFESETLGATERLIMLALADHADDEGRCYPSITRLCQRTGLGERAVQTNIRKLQAQGYVEIIPGAGR
NGSNLYFVRPTPTPPPAPDAPPHEMHPAPDAPPPRTKCTPTPAPDAPKPSVTIIEPSLPLVVPQREKPKK
PDKARLPEDWAPSDEDRAYALSLNLTDAEIEEIADDFHAYWTDRTDAGGRKSRRGWRQTWRNRCRDVAPK
FIRNRRMAGQAYTGGHGQGGGIAGAVARRQFGG
>gi|99080636|ref|YP_612790.1| hypothetical protein TM1040_0795 [Ruegeria sp. TM1040]
MEVRYEGRYPTGANGEYLPSYEVAVGCHIHGTTAQREAAIEDLKKFQTPAPIPQIERWLAELSVLTAGRG
TDGIAAELQLTAYSSRLAQYPADVVRHALLRHSWKWFPSWAELERLCEAKASPRRHMIAALSQPAPDPEP
KRRPPTNEERARIQAMVDEMFPRQSRKDREAAVDIALRGDCMMGDPS
>gi|99080637|ref|YP_612791.1| single-strand binding protein [Ruegeria sp. TM1040]
MMAGSLNKVMLIGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFNEGLVRVAE
QYLRKGSKVYVEGQLQTRKWQDQSGQDRYSTEIVLHGFGSTLTMLDGRNGDGQSRDDGGYGGGQDSCGGN
RGGGYGSGSQSIDDDEIPF
>gi|99080638|ref|YP_612792.1| hypothetical protein TM1040_0797 [Ruegeria sp. TM1040]
MAMRGRPLKNRMPPEFWERVEVALVVGQVTFTEWSASIGKSCAAVSSLRARGTRPPDEYIDALCALTGCT
REFLFNPEPVDLSK
>gi|99080639|ref|YP_612793.1| hypothetical protein TM1040_0798 [Ruegeria sp. TM1040]
MTNTYAINTTRGKEFAVRDDLKAMGVNPWVPVRLGSRYVKEKRSAVWYDAAYVPKLMFAVIPAIIWRDVL
EHKHVIGKPVALSRLDIEGIPGHVKKSTGAVVPPVPGLNDFRRAVEAEYADAERARANSEYQCQFKPGQA
LELLCPPWEGFSATFAKVIKHAHDDYAKLRVELEIFGRVTPLDVDPDRVKGVA
>gi|99080640|ref|YP_612794.1| hypothetical protein TM1040_0799 [Ruegeria sp. TM1040]
MSRALSGILPVGDVHFCALLALRTASSSFAIRIGRGSSCQPFGSLTAKRARASRYLRSMSVLQFKFPPPC
IQQVHTMTPLHLAVDALAHAGL
>gi|99080641|ref|YP_612795.1| terminase small subunit [Ruegeria sp. TM1040]
MALTAKQERFVAEYLIDLNATQAAIRAGYSAKTAYSVGHENLKKPEIAKAIQEANSKRSERTEITQDRVL
QEFARIGFADIRKAVAWGSTPADLLEGDEGGDEGTPASVYPVDLVRSSEVDDDTAAAIAEVSLTKGGVKL
KMHDKLSALEKLARHLGMLNGSGAGDDDAPSLTININSKEPVGDVRVTRSDG
>gi|99080642|ref|YP_612796.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
MSHDLTVSAPQGVFLSGLNTKFRAYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPT
VDEAAHSLGFTTKVKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIARALVDEIDILSKDKAQAAWR
KIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSNYSMVQASTYENEAFLPPDYISTLLEDYPEE
LIKAYLMGEFVNLTSGTVYRSYDRLRHRSTQSIQPREPLHIGQDFNVGNMASVVFVQRGEDWHAVDELQG
LQDTPHLIEVLCDRYEGHHLTIYPDASGSSRKTVNASTSDIELLRKAGHAIRAPSTNPAVKDRILAVNTA
FENGRLFVNALRCKAYAEALEQQAYDKNGEPDKSAGLDHHPDAGGYFVHQKMPVVKPTFTRQELRL
>gi|99080643|ref|YP_612797.1| hypothetical protein TM1040_0802 [Ruegeria sp. TM1040]
MTQSVAQRTPAAEALVKSAALGRILMGGTKAMRGAGQKHLPKFPAESHEAYEARLASSFLFNGFKKTVRD
MTGRVFTKSVEIESDTLKEEEQNIDMQGRDLSAFARDVFEAGLSGCGLSFIMVDAPPRQGDVTKAQAQAS
NLRPYLVHVKVEEVLGWKTATEGSRTFLSQWRMMETLELDDPEDEFSVASMKQVRVLTLVEGRVNVRLYR
EADKGANWELHAEFDTQATEITVVPFYANRTGFFAAEPPLEDLADKNVEHWQSASDQRNILHFARVPILF
ASGRDDESPLTFSASAATTARDPNAKLEWVEHSGAAIGAGRDDLKDLEFQMQVLGLQLLVAGTETATGAS
LDAAKETAPLAMMADNLKDSLEQALRWFTMYQGSENAVTVKVNKDFGVSMLTAQELTVMLTAVNTGNMPR
RVFVEEMKRRGFIAEDTDTDAYLGDLDDETPPGLTDGGE
>gi|99080644|ref|YP_612798.1| phage putative head morphogenesis protein, SPP1 gp7 [Ruegeria sp. TM1040]
MAVNDDLADELIRHQVYLQRFGNATARKVLALLKRSDSRLIERLLRDDLSGLSRTRQEALLRELRRIIDS
AFEDATGALQIDLNGLAVYEGEYQLEMFRRVLPVKFEMVGPAADQILAAVNSRPFQGKLLKEVYSELSAS
SFRKVRDTIRAGFVEGRTTDEIVRDLRGTKAQGFKDGVLDTNRRATETVVRTAVNHTANTAREYTYERNA
DLVKGVRWNSTLDGRTSAVCRARDGKVYDPGNGPRPPAHFNCRSSTSPVLASWRDLGFDIDELPPSTRAS
MNGQVPADQDYDTWLRKQPRAFQVEVLGETKAKLFRAGLKMDRFIDRKGQELTLTELKRRERDLWEKAT
>gi|99080645|ref|YP_612799.1| hypothetical protein TM1040_0804 [Ruegeria sp. TM1040]
MKIELTDLSGLPEGLKSVVESEGDKHTLDLSKLMPSEDLTGLKSALQKERENARAWEKFGKPDELEAKLS
ELEKKAQGTGKAAEDAQAKLDALKAEYDGKLSDKDKRIEIMMKANASESLKAELAKAGFIPEAIDDIAAT
ALGRLEFGDDGTPKVLTADGKPMIGNGADHGATLSDLAKELADAKPYAVRDGGKGGGGKQPGSQSGTPAH
SNPILAQVPGLADLPEK
>gi|99080646|ref|YP_612800.1| hypothetical protein TM1040_0805 [Ruegeria sp. TM1040]
MSLSNMQVFNDYIMPATIKSLDQMIDKFNAGSAGAIVLSSEGMTGDFMRESFFASLAAAQRRVNRKGANG
AASATDLSELTGSKVKIAGGFGPVRYEPSQMTWLQRPTQQGVLAASTAFAELLLQDQLNTAIAALVAALS
NNAAVTNDVSGSAGMTYGAINSAHAKFGDASGQIVANVMTGTVAHKLIGDNLTNGQRLFTAGNVNVIDIL
GKAVIVTDAPALYEAGTPNKSKVLGLVPGAATVGNTSDIITNVETTNGKERIETTFQADYSFSLGLKGYG
WDEANGGASPTDAEIATGTNWDKVAEFDKMTAGVIAVADADQ
>gi|99080647|ref|YP_612801.1| hypothetical protein TM1040_0806 [Ruegeria sp. TM1040]
MKIAYEKHPVSKERKAELRGKGFKIIDARFDPDRKDEDVSTKNIAEMERDDVIALLKKNGVDDPKGKIAD
LRNRLTAILFPEA
>gi|99080648|ref|YP_612802.1| hypothetical protein TM1040_0807 [Ruegeria sp. TM1040]
MTLTVEDGNGLAAADSYVTLAAYQAYGAARGWTLGADDVADEVSLRRAFDGINRLWSYLGEAETDDQAGA
FPRTLWTGVPQRVKDAQCELAYLVQGGLDPFATIDSSSTGETLKVGPITIGGHSLPTGRPRIVAVEGLLR
PYLGAGPGQARMVRG
>gi|99080649|ref|YP_612803.1| hypothetical protein TM1040_0808 [Ruegeria sp. TM1040]
MSVIDNFPRPVQGDVFRMLCGEMLGSGAAREVFECAYDPSLVVKIENAAGSFQNIAEWQMWWDAQHIPHA
AEWLAPCVSISPCGIVLIQKRTTPAKRYPEKLPAWLTDTKRTNYGMIGKRFVCHDYGVHLMCNSGLSKRK
RKVEWWDAA
>gi|99080650|ref|YP_612804.1| hypothetical protein TM1040_0809 [Ruegeria sp. TM1040]
MTTIRSKVTEAFDKIAARQPDAIQTGAIRRVETTGGSPSNPDGGTTTTTDYPARMAVFEIGADRIDGTNI
LAGDLQVIVEPIGIEVTADDKVICDRGTLTITKLGRIASGGETALYDMICRGSR
>gi|99080651|ref|YP_612805.1| hypothetical protein TM1040_0810 [Ruegeria sp. TM1040]
MGFAEDIEAFASKTERKMDLAVRKIALELFSRVILQTPVDKGRARANWQVAIGTAPDGTLELEDKSGTAT
ISAATATAAGLRAGDVIYLVNNLPYILRLEDGYSGQAPAGMVGLAVQEFQRIAEQVGFELVQI
>gi|99080652|ref|YP_612806.1| hypothetical protein TM1040_0811 [Ruegeria sp. TM1040]
MSNPESDIHAALMAQAETITGYAMLWPQKGGDQPIGEHIRVSHVPNDNAPADLSSDVMERQGFLYLTLVS
DLGQYEAVTKRKAGEIAAYFKRGQRLTSNGTTVKITGHTVRPGRQEGGRWETPIRISYWSMA
>gi|99080653|ref|YP_612807.1| hypothetical protein TM1040_0812 [Ruegeria sp. TM1040]
MTQNHIGDTIYVAKAYPATNDAAGFEALVWVQAKGNVTLPQLGVSHSMIDIPDLATGFTDAVKGAGQGVD
TTMTFRDVDGDTGQADVIAQADDNDGILCVKIVSGTGADTGDGPAPVAGDVVKYAQGIAHSHQPNQGDSS
SYKGFQVGFRQKKPTVVATQPI
>gi|99080654|ref|YP_612808.1| hypothetical protein TM1040_0813 [Ruegeria sp. TM1040]
MDFARIDPRRDAEKGATYHVDYDGERLFHDKKPIEIDFLGLQSATGKRAAAKMVKDLDRKTGRKRDASKM
SVDEMLAASNESEEARARFYANLTTGWRNVAYLDDADIDNPDAEPTLLEYSKENAFKLFSTRPWIMEGID
RFLGDKTNFTRSVGKD
>gi|99080655|ref|YP_612809.1| hypothetical protein TM1040_0814 [Ruegeria sp. TM1040]
MPDLSDYQEMLWRAFLEVGPTLPGAMGEVPLSWAEVDAYARHSPELTEPWEVQLLVHMSQQYLAEKVKGA
DVFTVPPIERV
>gi|99080656|ref|YP_612810.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MTIRPIRADADHAAALSRIEELWGAEPGTEAGDELDILVDLVEHYEERQFPFPELAPIDLLKAHMEATGR
TQADLAALLGSRPRASEVLNRKRALTVDMIHKLSSEWHIPAECLVRPYHLEAA
>gi|99080657|ref|YP_612811.1| hypothetical protein TM1040_0816 [Ruegeria sp. TM1040]
MRIIARNTITDFAANHPETRAPLEHWFRITKAAEWNTPQEVLASFSKSKVLNAERVRFEIGGGDYRLIAA
FDFRRKIVFIKFIGTHAEYDRIDALTVSKH
>gi|99080658|ref|YP_612812.1| hypothetical protein TM1040_0817 [Ruegeria sp. TM1040]
MMDRGNVASLSTLQIDQMEERKHDTDYQLSLCRSMMEEDMILPFAFHRAAILLSKEKRFSEALDVCLYVQ
RWCDNAKSNWDGVSALHWESPKLKNCIERIPKLMERAQ
>gi|99080659|ref|YP_612813.1| hypothetical protein TM1040_0818 [Ruegeria sp. TM1040]
MTLVADAARAGDYWMRKILIAVATVGAIGFAPSNALGAPKLDELGSDVSLCWNDEALSDDAARATTTVEF
HVGQDGLVDLNTIKIVSSTAITQTASKQAFEAARRAIIRCLMSDPVDLSFWDTTLEAVFSVATGVKVRYQ
PNTTVDT
>gi|99080660|ref|YP_612814.1| tape measure domain-containing protein [Ruegeria sp. TM1040]
MTDFARLGIAVDSQPVVRARDELGRFVRAGRTASEAADRLEHSTGRARDEFGRFVKGGNAAAGAATGLSA
ALRKTVIQMGAVVGIAQSARAVGGAAESYTKMTNSLRAMGIEAGQAAGVLQSIADVANRTRAPLDATAQL
YQRISIAGRDLGASQAEVLRFTENVGLALAQTGTSSQEASGALLQLSQAMAGGTVRAEEFNSILEGAFPI
AQAAANAIDGAAGSVGKLRQMVVEGEISSREFFEAILSQTDALEAAFEQTVPTISQAFGVLGNNFTMFIG
QMDAATGASGVVAEAILMVADNLNTVAGIAVSAGVAVATAYAPAIWGAVKATGAWVASLVTLRGALLATG
VGALVVGAGVLIGKFLDLVRATGGWGNALEILGDVASGVWDGIKTSASAIVPALGALWADMHARFVRVLQ
DMSLAWGNFLWSLGARLDGVPFFESVAQGLKNASDSAIDSMIELDAKASGLEGTAIRLRKEASGLVSEGF
DKAAEAAGKLRAQLEGTAGATDTGADAAGELNDALRELEKGGAKAGRGLERVKSEAEAFAEAMEDAAFTT
EDFGKDKAGILIGGIDGISGAWGDFVSRGFSDFKGFVKNVLSSFAGMLSQMIAMSARNRIMIGLGFGGVS
GGVAQAAAEGGSGLLGNVLGLGSGGAFSGAVSGISSGLGGVLSGGGLGSSFANLGGLVTGSVGGWGAVGA
ALPALGAVAAAVSFFTTKTKHLDNGLRVTADNMGTLVEEFDKVQKSRFWGLSKKVSLTFEEADEATAAPI
RKSIEDITTSIGAAGARLGLTADNFSSWSTQIQVSLKGLDEAARNAEIQRIFDTVADQFSYAALGSFNEA
MGGRLIREGEDAAATLDALVSSITSANQAMDLLNGAMFETSVYGADMARQLIDAAGGLDTFNASVNSYFT
SFYSQEEQLASRTGLLADQFEALNVAMPATKEAFRDLVEAQDLSTEEGRALYAGLLNLSGEFANLSQLSE
ELYGSASLAASGISALVRSFSSDVLGAEDELADAQATALVEYNNVMRIMDLQIRSAQSARDSIKGIFDIL
SDGLDARTPLELEAQRLQRERLKAELSAGIDDPQRLREVVQGLNAPAEQFFSTYADFAYDYARTSALMDE
QKGIAEEQLTEAEQQLRALENQKRAVEELYGPLLGIDQNTDNLEEAMERLETAMLGVEAAMLRVEDSMYA
LAQALLSAVSGIGGTGGLMGMGRDAFDQFSFDRTNGILSDQGAGVLDGVAAQINGLYQDVFGRNVDVAGL
DFYGDLLQSGQVKAGRIQYDLMTSGEAQTGVTPGFGNIGSAAQPVDPVEALYGSMLGRAADPAGVEFWKS
TGLQGEALISAFRDGALAAGDTPSFDGGGYTGSGPRVGGLDGKGGFLAMLHPRETVIDHTRANRSGGQAE
VDSSAVVQELRKIGDRLAVLESHARATTYNTGKSMRTHTKWDRDGVPKERT
>gi|99080661|ref|YP_612815.1| hypothetical protein TM1040_0820 [Ruegeria sp. TM1040]
MSLRMIEPETIDDAAFVSSTVPETDAPVWDVSTDYPFSDPDNPEEVIVEEGQHAIYRAVAPSGPSHGGAV
DPATDTGNTKWVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSVALFGLYALSVTVLVRDSGGA
EVYNQTYSLQDENSVVDLYTYLTSPIILSDRLVITDIPPYAGAKVTVTAEASGEDIEVGQIVIGRKEELG
VTIDEIPLSIQDFSRKERDPDFGRVSLLEKDFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPY
KANEFSVYGFYQSFQVVPRIGIESEGILELESIT
>gi|99080662|ref|YP_612816.1| hypothetical protein TM1040_0821 [Ruegeria sp. TM1040]
MSDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAGEVTTVISWVSEKVTEIAGSVAAASDSAAAASTS
ASQAAQSALTAAGAANYQGDYDAGTLYAVGESVSYTGSEFVKKTTAPAGTTPVDGTDWLEVGNAAVTSKA
LTLTGTSPALDLSVADFFDLTLTGDTTLSFVNAPVAGTVKNFTLKLTGGSENAGFALASATYDSVSFSVG
AQGTEPKSITFKPDGTKMFVSDGSTPDSIYQYSLSTAWDLSTASYDSASFNVTSQVGVVEGVEFSSDGTK
MFVLDFNSDRVYQYTLSTAWDLSTASYDSVSYLVPSPVTQPQGLAFKSDGMKMYVQGYGPSEGISQFTLS
TAWDLSTASYDSVNFDFTAPSVGFAVNMSISSDGTKIFLQNSSSVIQYNLSTAWDLSTATYSGVSFSVSA
QDTAMKHAVFKPDGTKMYVAGDTNNTLFQYSTDVDVEFTLTYPTIRWPGGVAPTVASDGETDLIYFTTRD
GGTTFYGTKRGDAYS
>gi|99080663|ref|YP_612817.1| hypothetical protein TM1040_0822 [Ruegeria sp. TM1040]
MTYALVRDGILTRYPYSLEDLRRDNPRLSLPPTLPGFKLAEYGMFPVLIAERPTLETDEVAVLSEIPELV
EGQWVLGWTVRAKTPEEVAAERDAMSVPRGQFAVAAAGAGLVTEQEALNWAGGNSLPATVNAVIDALPQA
EQLPARVEALTALNVQRMHPLVLMLQASLGLTDEQTDGLFV
>gi|99080664|ref|YP_612818.1| hypothetical protein TM1040_0823 [Ruegeria sp. TM1040]
MSRQTGSSSNWYIRRGDGYLTTSEIAWEIGAKGSGLFLYVPPGFAFDVSIPRWAGWIFDRHDPRYLKAAA
LHDYALHRLGWGRVSAAAPFSEALRAAGVSRIRRLAMVLAVTIHKWR
>gi|99080665|ref|YP_612819.1| hypothetical protein TM1040_0824 [Ruegeria sp. TM1040]
MKDLLFAIEFWLAMAAAILLKLRASPQITLFGAITTTASAICCALVFTEPLMDWLELDGEVYTYAVCALI
ALTGEHIARQILSLGIEDAVRLLRGNKK
>gi|99080666|ref|YP_612820.1| hypothetical protein TM1040_0825 [Ruegeria sp. TM1040]
MTWGKFIVGAWGAVLALSLMTSALPASWWFQAGEVRVADASSGECPEMQFDREINRPFKAAWTVTIMGRA
SYGWATYRTFQGANDYRPENQLPDKLDLCWWTWADPLLLPPGEYRVNTLWRIHPTQGRAREIRRTSNTFT
ISGG
>gi|99080667|ref|YP_612821.1| hypothetical protein TM1040_0826 [Ruegeria sp. TM1040]
MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEEVKAIYRSQYW
DKVGGDELPGGLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTMEAVDRADVEGLIQSICQARFS
WLKKLRHWGTFGRGWTRRVMGESLGVQARDTGVIDRAVYLHRELAVIHAPSYREDGSGARAEDGERSLSA
TVKELITSGKGWTNGGALGGGAIALTQLQGPVAYALAAVLLIAAVTAALYFLRSQEAEA
>gi|99080668|ref|YP_612822.1| hypothetical protein TM1040_0827 [Ruegeria sp. TM1040]
MTGLIAFLMRMGFGGMVDKAISHLERRAELQNDREKLRSQTTVELAREAVKEAQIMADYNRAKFAFPWFW
LFAALFLVPLAAWWSAVILDSIFGFTWSVADLPTPQMQEWAGDMIRWLFYVGTGVGAIKSLR
>gi|99080669|ref|YP_612823.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040]
MRVLLADDHDMVREAIAAYLTADGEIDVKAVCDAHAAFDAMQTDVSFDLVILDYQMPGMNSIEVLKRALV
ANGGKGVAILSGSGSPGLAKEVLDAGAVGFVPKTISGLTLLNAVKFMCAGEIFIPHDLLRESTVAPTHPL
LDGLSPRQIQVLEGVCNAKTNKEIARELELEEVTIKFHVRTLCRKLEVQNRTQAALAAKSAGLF
>gi|99080670|ref|YP_612824.1| response regulator receiver protein [Ruegeria sp. TM1040]
MSTSSPIGSIMLIDDNEIDHRMCKRVVERSGLVGEFITFLSAEEALDHLRQAGDRPVVDAILLDVNMPRM
DGFEFLETATAELGERFARVVVMMLTTSLNPRDKERAQQFSVVRDYCNKPLIIEYLQRLADILANDPETA
K
>gi|99080671|ref|YP_612825.1| PAS/PAC sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MTKNAQAVSKPTSAKHYLEEELDALFQQDAEAWRFVQQGSLDGVWYWDLKQPDKEWMSPEMWALFGIDPT
TKRHDPSEWQDIIFKEDLEVALKNFEKHCADPNHPYDQIVRYRHADGSTVWVRCRGIAIRDETGKPIRML
GAHNDLTAVKLAEERANTACRETAAANEELRSFAYSISHDLKSPTNTMDMLLREIAIADDGGMSEEQREL
LHTAQETANRMRSLVDDMLDYTRLIGEEPVWESVSLYDTGTRVRDMLGSLVAETGAKISIDENLPNVSGN
PTQLRVLLQNLIENAIKYRDPSRPPVVVVSKLHAADTNETGFSVADNGLGIAEGHQDRVFEMFKRLHRED
EVAGAGLGLTLCRRVALNHGGDIQVSSKLGQGTTFTVSFPERNT
>gi|99080672|ref|YP_612826.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MPLNYHHLRYFWAVAHDGNLTRTAQRLNLSQSALSVQIKNLEERLGHALFERRGRQLHLTEAGRITLDHA
DAIFSTGQELVATLTGAVQERKALRVGALATLSRNFQIEFLRPMLARQDVEIILRSGSPTELLEGLSTLN
LDMVLMNKPPPNDSLTRYDTHQIGEQHVSIVGTPARLDPTKSLRDLLAEQPFIVPTMDNSVRTAFDSLAS
RMSVRPQIAAEVDDMAMMRLLAREDIGLSLVAPIVVKDELTSGLLNEAKDHLQIKETFYAVTLRRRFPNP
LVQDLIKITADLAPFGRGDSEPS
>gi|99080673|ref|YP_612827.1| NADH/ubiquinone/plastoquinone (complex I) [Ruegeria sp. TM1040]
MSYLFVPLFSPLVLLAAAVYAARNPGKRPGRVPLVAELSALAAFGGALLSSALLAMEGPGTSALVGALGI
GISVRLDVVSVVMLVLVSFIGWIVLRYARTYMDGEERQGAFTAWMAATLATVLLLVMAGNLVQVFAAWVM
TGLLLNQLLLHYPERATAQRAARKKAFVARLSEVALAVSFVLLVVATGTTDIATILESATATWLTMSAAL
FLAIAAVLASAQFPMHGWLTEVMEAPTPVSALLHAGVINAGGFLLIRFADVMLLAPGVMALLVMLGGFTA
LFGGLVMLTQPAVKTSLAWSTIAQMAFMMMQCGLALFPLALLHIVAHSLYKAHAFLRSGEAVRNVAKIRR
PGPVAVPSLRNVAQAFLSAIAIYALVGLGLGFDGKSAQAIALGVILIFGVAYLLAQGFADEAPRALMRRT
VVYALATSLSYFALQVIAVSLTKGTLPATPAPGPLEWALLVLALLSFGLVAIAQSTFPLWATHPAAAGLR
VHLTNGLYANAIFDKLLDGWSKRAAT
>gi|99080674|ref|YP_612828.1| hypothetical protein TM1040_0833 [Ruegeria sp. TM1040]
MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVGGTKIMPERAH
WAAKLEAGDITETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPTVAELAADVSGLDWPALIEDR
ISAWAAGHFDEGQALWQQAKTGGTFSAWRDFAARDLTPEIQGLSGFCAFVAATNRSHWRAIGRASERLNL
GTEAASTAFHRWLMTLGGWAQYGRYLLWQDELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVV
AAHQTPVTPTPDLVIDAIWQDAAERAEQRRLAETLQSGAVQPVEGRAEVQAAFCIDVRSEVFRRALEAQD
RQIETLGFAGFFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDLDRRYSARAKRAWGRFKLAAV
SSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTSDFAKLVVLAG
HGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIEIPSDTVFLPALHHTTTDEVT
LYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRLPRASSEASVHMRARDWAETRPEWGLAGCRA
FVAAPRARTSGADLGGQAFLHNYVWQRDEGFGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLH
NVVGGIGVLEGNTGAPRAGLPWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHL
IAMDDEGKLAWRYRGDLKWSRFDAPQSTPSALAAE
>gi|99080675|ref|YP_612829.1| amidohydrolase 3 [Ruegeria sp. TM1040]
MTIPPQTVILNGRLITFDPKSPFAEALAITDGLISAVGTTAEIRALSAPSTRVIDAAGSTVLPGFIDSHV
HLFGGSVELACLDLTGVQGETELTEVVREWAAKNTEDRLVFAVQADYAILGEGIKTTRQALDRVLPDRPF
AMYAPDHHTVWANTAALEAAGLLHGAEVEAGAQVVMGTDGRATGELQEPSAYAPVLRMTRHAGRDMMGLV
TGADPVPAATPAERALDKAALERGLKHCASHGITGLHNMDGNFYQLELLSEMERDGTLLCRTEVPFHYKS
PDPLDRFSEAQDMRQRFNSDMVWCNRVKMFMDGVVESGTALMLRPYPGTDHIGDAVFEPEHFNEACIRAD
ALGLQIATHAIGDLAVRRTLDGYEAAQRSNGQRDSRHRIEHIEVLHPDDLPRFKALGVVASIQPGHAPFG
GYFPPSGVGAMLHPDQIPLAYAWQDIRNSGAKVIFSTDWPVIPVDVMPTIKGAVAPHSLGAPWRDQSQSL
MDTLASYTVENAWVEFNEARKGMLKPGMMADIVVMDHNLEAMDPQLLDQSRAAFTICGGRLTWEA
>gi|99080676|ref|YP_612830.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MRHLIAATTLATVSATAAMAEGQLNIYNWGNYTSPELIEKFEQEFDIDVTITDYDSNDTALAKIKAGGHG
FDIVVPSGTYVPIFIGEGLLMKSMPNQMENFKNMDPRWVDVDFDPGRDYTVPWQWGTVGVTVNTSVYSGD
INSAALIFDPPEELKGKINVVPEMLDVMGMAIHYMGGEQCTADKDMLAKVRDKLVEAKKDWLSMAYGNIE
KFAKGDLAAGVNWNGASFRARLQNDDIAFGYPQTGFSIWMDNAAILADAQNVDNAKLFLNYIMAPENAAL
LSNFARYANGIKGSEPFMDAAMAEASEVVIPDELKDAGYLAKTCPPDVQRIYSKIWTEVTK
>gi|99080677|ref|YP_612831.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSKGFDVRRQTGFTAIAIACFVLLYLPILLLVAYSFNAGDSIAIWEGFSWRWYASAWDNEQVKDATIRSL
ILATCASGVATTAAVLAALATTRSKPWRGQTVVFAMVNQPLMVPEIVTAVSLLIVFASIKSFTGYTGLGY
LILAHSAFCIPFAYMPVRARLQGMDLSLEHAGADLYGTPFQVFRHITLPQLWPGILAGAMLAFVISLDDV
VITEFVKSAGQDTLPTYMLGQLRRVVTPEINAISTALLAISVLMVTAFYFVNKVRK
>gi|99080678|ref|YP_612832.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MQDPALTAPPHPDPRARRERRSRWLLLTPALVILSLAASGPLLVVVIYSFLTPGDYGGVEWRFTLEPWFN
VVAERDFFTEELQLADAHLLVFWRSIKLSLMTAFLCLIVGFPTAYFIATRPQHRRDMWMLLIMIPFWTNL
LIRTFAIMELIRNQGTINTLLMASGLIDEPIQMLFTEFSVLIGMTYVYLPLMILPIYASMERLGFDLVEA
GYDLYASRLDVLRRIIFPLVKPGVVAGSILVFVPCLGAYVTPRVLGGGKQLMLGNLIELQFGQLRNWPLG
AALALTLLAVVMVALVFYVRAIGREGESDV
>gi|99080679|ref|YP_612833.1| spermidine/putrescine ABC transporter ATP-binding subunit [Ruegeria sp. TM1040]
MTSLRPTRDVCMIKIDGLTKIFGEGAEAFTALDDVSLTIQSNEFFTLLGPSGCGKTTLLRMIAGFLDPTR
GQLMLDGKDLLRHPPHQRPVNTVFQSYALFPHMTVSENIAFGLQMLKRPKAEIAATVSEMLELVQMTAMA
DRKTAQISGGQQQRVALARALAPRPKVLLLDEPLSALDFKLRKEMQLELKRLQHETGITFVFVTHDQEEA
LTMSDRIAVMNAGTIRQIGGPRDIYDHPAERFVADFIGDTNFLKAQMVSSTESGALVRLASGEEILAKAP
EGGAHSAGQAVTLAVRPEHARLCERTDALLIGTLDNVVYFGTDTHYHVTMEGGGTFILRRQNQPGQTQTL
AINDTVGVCFAPDTAQILKD
>gi|99080680|ref|YP_612834.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MSDPSEVQSRPRRKFGIFRSVRSKLSAVLVLLAAGITLFGYITYGLLMQVSGHITELNDENLPDLEVSQD
ITLAADMAKDSMITMLVVDNAAGIDQAMGEVDAARTALGSAIAELNDDIEPQFSASLDEVSQALADLAEA
RRVTFASDDQIEARVRDMQSIISELSVVMAELSRSAAIELRQGAEATDQKIDNTVTRLVEVDFYNQSLLL
EAQAELNLLTGAAVSAGGTKDPETLAQIEAMAEKSRDRLLEITDIISERAPEIFDTSLLITAVFTLETVL
AQSLFPSETLRKAALSARADTAKAIDTAINAQMRSLLASVNAAKDANGDALELLLTNEVGFLRELVEIGI
AINMFQVAALDAATSDDEASVSDAEKGMVEAGALFAKYQDFRDGRVVEFLSRLSDLNDPETGLAALQIKG
IKAAEASDAATLNARTSVEAISQRAAEFTASTLSEIDVMTDEIFDEVELMVRDLVVSAAVAGVCFLAIFS
VIQLLILRPLNRISASTERLAEGDRSPVTGFERTSTEIYRIARSLSVFRDGIVEKEELEEMAAAERQERE
RVQAKAVEALGTGLERLSSGDLTGHIHEELGEGYDRLRLDFNRTLDTLNDTVGQVIDTSASIRNGASEIS
QASQDLSHRTESQAATLEETAAALDEMTASVTSAAEGARDVERTSNEARSEAEASGDIVRSAVSAMTEIE
QSSGKIAQIISVIDDIAFQTNLLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSDAALEIKNLISDSS
KQVERGVDLVGKAGEALDNILNRVSHVSELISGIATGAQEQSTGLLEINTGMNQLDQVTQQNAAMVEEAT
AASQLLNTDAETLADLVARFQTANTARTPAAGAGDVGEDAGSEALAPTSWGDAQDIEWEATEVEEPFVPE
QTDWSDFDGDDTQATGT
>gi|99080681|ref|YP_612835.1| hypothetical protein TM1040_0840 [Ruegeria sp. TM1040]
MTSIGLRFEVPMISEFPRTNGPKVSIKDRIMVRKHHVCRWRPNDARIGLRIPRVLFSKKIAKSISIRHLE
YLVGSPEVTQ
>gi|99080682|ref|YP_612836.1| hypothetical protein TM1040_0841 [Ruegeria sp. TM1040]
MVYGDCRSGCIQSGRVEYTVRRLPVVSGCKRHFGFIHHVFAPQHLFYSSLSRTLGYVAYGGLSPRRSIWK
ANFGFFFDDPGPWSYRAICGGLSVAWPGHLWAHVFGSIRAGPIESAGTDL
>gi|99080683|ref|YP_612837.1| peptidase C1A, papain [Ruegeria sp. TM1040]
MPKSAPLARGDYLSAPPQLSLKRFVPPVGDQGQQGSCVGWATAYAARTLLKAKDLEVENTDRLRDLVLSP
SYVFNQIHQPGCNGSYVAEALTLMQRQGVSLLRDFPYDQYSCTAQPSASLRDKASQFRIKGYSRLWGGYG
RNKHVATRRALANGNPVVIVMGVGDGFMRHSGSGIWEPTSTEWSELRSNTLGAHAMTVVGYDDTRGGGAF
EVVNSWSAGWGNRGYFWISYEDFNAFVYEGYEVLPPDPPPPPRVVDMAGSARVLHLSGNELDVTRSEGGY
KIRKPLPSGTRFRVEASSKFNGALYVIGGDSSGDYVSLFPRGDRVTPYTHGGTTMLLPGPTEQHFTRLND
TVGTDYYVLLYAQEPLDPETIAMRMARGSGSVEARLRSALGNRLVPQDEMELLASGIGFEAASGEADVAA
LVLSIDHIAPDPAQADREAPLIVLTNPAPEAFDSADAVIPVQSRLFRLEGMAQDESEIASLRVNGSLSSR
YSSRGPFRAEIELPEGPGPHSIEIETRDAAGNAARRSFQFSLTFN
>gi|99080684|ref|YP_612838.1| OmpA/MotB [Ruegeria sp. TM1040]
MIRTALFRAILLLTLPLSWGGSVQALECRYCEGKDLGALIELSVSRDSGALRAQIRGWIAEKHPDTPAGY
VARAWALDQSGGDLKDVEQLYKEGIRRDPSLGLGFTNLGYTLERQKRYEEAFDYYLEGAKAWPHHAFFVQ
YAFFNLKNRQGEAAALDWLATYERTGPAQDWVYDYVRGVLARSNGDRRAADRYFEQALRRSTQPDALTAW
LDNRLRVLSAERADRNTRLNTIREAIDWANTNRSDGALRHIGKILWEDFNLPRDAHSLFRAAYQMNPSPE
AAHDAFGSIGNDDFDAGIAVLNQGLRDFPNNYHVLIAANWAWSEFKFDPQKAEGYGMRAIEMAPTQGELD
NAINQYARFANESAQYDKAVPVFEKYLSSVNGRAYRNILGDYVDNRVHARDFDQANRLLQRAKDYGGFSE
NWIAGRENRIRNALRLQGQRDRFFAENPFLKDWEQRFGDSLRVTVEFATGKADIREAGLGVLREAADALK
ARGAENYVFLIEGHTDSTGSDKINLPLSDARAKSVERYFVENAGIAPERLQTVGYGPRIPLATNATEGGK
QINRRVEIRPYGNISAPQISTSGWLDARSLTLSPDGRFAVTGNTPAQVWDLERMLRVHQLPIGGSSREIS
PNGRYIAVKSSFVGVTGVTDNLLYIYDMRTGLMHSQLPNALEIDEISWSPFSDAVAFSDRNGYLRVYDMA
TRQFRAVTKMGTIRGSEQIIWTGDGAHIVTKSPRTSTAVVRDAQSLRPVTTLRNAGRVHGFANTPDGKYL
VGMNNSYELIVWATADWREVARKRMPAMTFNLIAHPTEPKVMIADTFTNTTRLALVDVPSLKVTATFEGD
PEKIHYGGFTPDGQHYVTTLDDQIVYLDTQNLRVDQRKDGAAHKGRGLTMVPSQDLVLSRDSEGTSVWNI
KTGRRVHRIEGEVYQTWKPLSADGSVLFTFDEDGRMLRFDTTTFRSEVVKQIDGTPYSMRENDTHIAVGT
VPQGEGPFQRPVSNIYVIEKATLNVVMQKRFDIVSEPVRYNDIYDPAVYVRLSDDGKLAVTSSWMAGFKQ
GTTNGRVVTIYDPQRNSEVTSFQAEARFFQMDWAEGGEALKFRGKGRWYLHDPNTGKNTGRETPSANYEI
ALADGRTLEWFWDHVALDGKELTFPHNLRHLETHEDRNLAIGLTTGNELIFIDLNQMQQALTIAPRKNGE
WIAYTPDGRYTASLAGTEDVYWSLGDNYLPFSALSENYERPGLIRNLLEAIAQGEALPDDGVDVDADVFE
APYAVRLISPQRSTTEEETFVVELEVVKDSVDLADPEIEYTLNGRRVLKSRGFEEEAFFDGQETVGFSRR
FDLNPGRNVIEASLVWRDARIQTQTLEIMREGGEAPDEKPSGQTLWFFGVGVSDYERSSQNLNFADRDAT
ELAKLMEAQEGRLFNRVETKVLTDAEATERNVRIQMNEFLDQSSDDDVVVLFLAGHGVVDEEQELYFMTH
EGDLAKPYTGMSVDRFRDYLENRPLNQNALMLLDICHSGAGSERVVAEDAVQNLTKGTGAVVFASSSGSE
LSFEDESFGGGHGAFTAALLEGLRGLADNRVGDRNGFNSLQELVLFTSSRVPELTEGQQRPQIPALSLNV
DYPLSVATN
>gi|99080685|ref|YP_612839.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MYQELPPLPWLRAFDASARLGNFTLAAQELGLTPSAVSYQVRGLEATLGHKLFVRKQKSLFLTRLGQAYL
PVVSKAFGDLEATTSNLFGKSAAQEITLRCLSSLNMLWLAPRLSRFQAQHPDCRLRVLSALWGETPEALQ
IDIDIRYGNGSWSDGEVTRLMHHEVLAVCAPALHPGPDPQAIASCPLIEVIGVTDTWHHFFALHGLAPPS
SGPALKVDQSLIALELATRGMGVALIARVFAQRYLESGALVEATDLALPAREGHYIVQPEARNHFRPEVA
ALKDWLLQEAAQTGC
>gi|99080686|ref|YP_612840.1| glucose-methanol-choline oxidoreductase [Ruegeria sp. TM1040]
MRDFDYIIVGAGSAGCVLAERLSANGRHSVLVLEAGGRPRTPWIALPLGYGKTFYDPAVNWKYQTEPEET
LGGRAGYWPRGKVVGGSGAINALVYARGLARDFDDWEEAGATGWNWDAVQKTYERLESRFDVDGTRTGEG
PIHVQDVSDQIHRANRHFFAAAKELGLPRTPDMNGITPEGAGVYRINTSGGRRMHSARACLAPALRRANV
TLMTGVLVERIGFEGKRATSVEVVHKGRAQSLQAGREIILAAGAVNSPRILQLSGLGPAELLREHGIAPL
MDAPHVGGNLQDHLGINYYFRATEPTLNNVLRPLHGKIRAALQYALTRRGPLALSVNQCGGFFRSDAGQR
AADQQLYFNPVTYTTTPDGKRTVVQPDPFAGFILGFQPTRPISRGRIDISAADALAPPRIRPDSLAAQED
QAQVIAGGLLCQKIAKTEALSRLIAAPMGEDLREMTPEQILADFRERCGTVFHPVGTCRMGADSTKSVVC
PRLKVHGVAGLRVVDASVFPNITSGNTNAPTMMLATRAAGLILEDA
>gi|99080687|ref|YP_612841.1| mandelate racemase/muconate lactonizing-like protein [Ruegeria sp. TM1040]
MSTPYSTSGAMPVTHARGADDTGPRISKIETFCTPLIGFVRVTAEDGSQGWGQVSTYNSDLTSEILHRQV
APWALGRGMDALEEVIAEIPLREHKFPGTYLRRAMAGLDTAVWDWRGKAQGKPVAELLGGSAGPVRAYAS
SMRRDITPEAEAERMQRLRDAHGFDAFKVRVGAECGQDRDEWEGRTEAIIPAMCKAMGAQAALLVDGNSG
FSPARAIEVGRMLEANGYEHFEEPCPYWEQEQTREVTQALGIDVAGGEQDCDLQHWKRMIENRVVDIIQP
DILYLGGMVRSMEVARMGHAAGLPCTPHAANLSLVTLFTMHLMRALPNPGRYLEFSIEGDDYYPWQRTLF
ANDPFQITNGQALVTDAPGWGVEICPEWLAKSTYKCSEDDQ
>gi|99080688|ref|YP_612842.1| betaine-aldehyde dehydrogenase [Ruegeria sp. TM1040]
MSVDALISTYFANGRLSDLPRDHFIDGRLVPAETGNRMESFDPGRATAFGDFAAGTAVDVDRAVSSAVAG
FAIWRDTAPATRCAVLMEAARLMRAEADWLAVIESLDSGKTLAEAYGDVQGSARLFEYYAGAADKLDGRS
VNLGNDNAAFTLREPVGVTAHIVPWNYPTSTLVRGIAPALAAGCSAVVKPAETTPYTALMIAELLIRAGL
PAGVVNVVTGTGPEAGAPLVRDPRVRHVTFTGSVQTGVGVMQAVAPNVTGLTLELGGKSPLVAFADADAE
KVAEGALWAIFSNAGQICSAGSRLVVHRDLHAQVLERLVKKATTLRFGHGLHNPDMGALNSERHQAAISG
HVERARARGVEILCGGQATTDPATGKGWFFEPTILDALSADDPAIQQEIFGPVLGVQVFDDEDEALALAN
GTEFALAAGVYTKDTSTALRMARRIDAGQVTVNDYWAGGIELPFGGNRKSGFGREKGLEGVDAYTRAKAI
TLAV
>gi|99080689|ref|YP_612843.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MQFKLRQLQAFRAVAETGSITKAAEALGVSQPAVSRLISDFSASMDLELFQRRRGILEPTSDSRHLLTEV
RRILAGLDHLEDLRRDLKERTGGHMRIACLPGFATSHLPQVLAQFMKERPGVTVALEPDRPERILEWIIG
EQYDCGITDDFAGHPATESIDLFVRSACILPPRHPLEHKTIITPRDLAGEKLIHTRRDSGFYRRLSRAFA
EYETEMNSLIEVRQFTTACLMVREGVGASVVSALDAEGFRDRGIVIKPFEPKIHHRLSILFPSAVSVPRV
VRDFMDVFVESLSPVLASPAPK
>gi|99080690|ref|YP_612844.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MGVSKIALSCALATALTAGAAWAETEIQWWHAMGGANGERIDKMAADFNASQSEYKIVPTYKGNYTETMT
AAVAAFRAGEQPHLVQVFEVGTATMMAAKGAIYPIEQMMSDAGEAFDKSDYLPAVISYYQTPEGELLSMP
FNSSTPVLWYNADAFKSAGVDVPETWDDVKSAAQALVDNGMECGLSFGWQSWVMVENFSAWHNIEMGTKE
NGFAGFDTEFTFNNEQVAARLEDIASMSEGNLFKYGGRRGDSLPLFTNGECGMWMNSSAYYGSMVEQAEF
EFGQTMLPLDTSVADAPQNSIIGGATLWALAGHEAEEYKGLAQFMTYLSSPEVQAWWHQETGYVPITTAA
YELSKEQGFYDENPGTDTAIKQLSLNAPTPNSRGIRFGNFVQVRDVINEELEALWAGDKTASEALDAAVE
RGNALLRKFERSAK
>gi|99080691|ref|YP_612845.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MLKRVHFPSSLLPYLLVAPQIAITLVFFIWPAAQAVYQSFLIEDAFGLSTEFVWLENFELLFEDDIYLAT
FGRTIFFSAAVAILSMSLALILAGFADRVVRGATAYRTLLIWPYAVAPVLAGALWVFMFNPTLGIFPYIL
DFVGVDWNHYLNGNQAMALVVFASAWKQIAYNFLFYLAAMQAIPRSVIEAAAIDGAGPIRRFKDFIFPLV
SPTTFFLLVINAVYAFFDTFGIIHAVTQGGPANSTTILVYKVFNDGFVGLDLGGSAAQSVILMVLVIAMT
VVQFRFVERRVQY
>gi|99080692|ref|YP_612846.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MVENRPILNIVSHIILILGIAIVALPIWITFVAATHDAVRMTQAPIPLLPGSYFWENFKQTLFGSGLSGT
EIAPVWRMLLNSLAMAMLISLGKIAISLISAFAIVYFKFPFRMGFFWLIFITLMLPVEVRILPTFEVVAD
LGMLNSYWGLSIPLIASATATFMFRQVFLTIPDEMLESARIDGAGPMRFFWDIVIPLSRTNIAALFVILF
IYGWNQYLWPLLITTDTDMTTIVMSIKQMLEAAEQSPQWNIIMMTALLAMIPPVFVVIAMQKLFVQGLTE
TDK
>gi|99080693|ref|YP_612847.1| glycerol-3-phosphate transporter ATP-binding subunit [Ruegeria sp. TM1040]
MASITLKDLVKSYGDTEVLHHIDGEINDGEFIVIVGPSGCGKSTLLRMIAGLETVTSGDIKICDRVVNDL
EPANRDIAMVFQNYALYPHMSVRENMGYGLKIRGNSKADINRRVEEAAEILEIGQYLDRKPRQLSGGQRQ
RVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRLEIRKLQQRLGVTSIYVTHDQVEAMTLGDRLMVLNGG
YVEQFGTPIELYDRPATLFVAGFIGSPSMNFLPAEIDAGMVTLENGARLAGGGSAAGKVTLGLRPEHLVA
DDNGPVEVNVQLCEQLGAITLLHGHLNGTDTECVASMPGHVTAAPGTLMRFSIAPENLHMFDPQTGKRVA
E
>gi|99080694|ref|YP_612848.1| glycerophosphoryl diester phosphodiesterase [Ruegeria sp. TM1040]
MTAFPQVDAYRGGAGLIRVIGHRGARGVMPENTLEGFRFTFDIGVDVLEFDVVMSSDGVPVITHNHALLP
SAVRDGQGAWLQREDIKVADLTLKELRDLDVGGLDSRSDYGRRFPDQAFLSGAVMPTLAELCALVQEPQY
AHVSLLLELKTDLSDPDIDALRSAQVAAVVDVVRAHGLTGRTALHSFDWALLDECRRQAPEMPTSYLSEA
PRGEGASCQPDGVTKAGNLPEVVAKAGGQMWCPWFEDVTPELLDEARALSLPVVVWTVNEVDDIVAMIEA
GVDGIVTDYPGRVQRLLLERGLGWSARVSTPPVAV
>gi|99080695|ref|YP_612849.1| haloacid dehalogenase-like hydrolase [Ruegeria sp. TM1040]
MAGQSTDIGTDWAFQRYESVRATLPEASFAAASRRGGDLGDTVGDFDAYILDAFGVLNRGETAIAGAVER
MAALRALGKRLVVLTNAASYTRAEVLAKYHRLGFDFDASEVVSSRDVAFAGLPALPAGAFWAAAAAAGDD
FSDAPSGAEIAHLAERPELLQSAGGFLLLSSARWSAAETDALTEALLASPRPLVVANPDLVAPREDGLSM
EPGLIAQELTERTGQPAAFFGKPFGNAFDAALARLSGIERTRIAMVGDTLHTDVLGGAAAGIGSILITDH
GLFKGHDVAPYIEKSAIRPSWIVSTT
>gi|99080696|ref|YP_612850.1| Na+/Pi-cotransporter [Ruegeria sp. TM1040]
MTAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQSSTAVAMLVS
NFASKGALSIAVGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALFLRSEQRKLRQTGRILIGLAL
IFVSLDMLRTATAPIIESKGAVAVLGYLDSDLFTAFILGAIFAWVVHSSVAAILLFVTMVAQGALPPMAA
MAMVLGANLGGAMIAFVLTLAADVRARRIVSANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLH
LVFNLVLCLLALPFVGLIARMSERVMRDPNVQSLGRGMTALDPAALEDPPRALNCAARELLRMGEVIEKM
LVAAMGLYEVWDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAVNGAIEASLMAANLEAAADQV
ARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKESIRTAEQKLQ
SKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLLSSRLSSQG
>gi|99080697|ref|YP_612851.1| phosphoglycerate mutase [Ruegeria sp. TM1040]
MKDFPKIWFLRHGQTEWNAERRVQGQLESDLTELGITHAHRQAELMTPILQAHQPPCFVSPLRRAQHTAR
IALSGRGYETEPALAEVHAGRFQGLTIDEIAAQFPQVDAQAMTHLDLFCAAPEGEGYASLHDRVLALLRR
LEQPTVLVAHGLLGQVVRGLICGLERDEMAALPNEQGCVYVLEQGQETVLR
>gi|99080698|ref|YP_612852.1| hypothetical protein TM1040_0857 [Ruegeria sp. TM1040]
MSERWGVIFAGRGGRQAQKCHFPSFPLKKMTKGNKRLKRIANTALEAVHLMRTPETLPPYPRGDGKNIEH
MLEPASTELRTHLYSGSQVRTSHVTTSKRYFGIERINER
>gi|99080699|ref|YP_612853.1| thioesterase superfamily protein [Ruegeria sp. TM1040]
MSTSQPDTAPQNPPETQPTIRVIAMPTDTNPAGDIFGGWLMSQMDLAAGTIAARVSKGRASTVSVEEIQF
HRPVLVGDEVSLYAEMLKIGRTSMRIRVRAWRRARHQEETQQVTEAIFTFVALDDHARPRPVLREA
>gi|99080700|ref|YP_612854.1| hypothetical protein TM1040_0859 [Ruegeria sp. TM1040]
MSLTPVLDKIDSDVSAATDRLLELLRIPSISTDPAYKADCDAAADWLVKDLNSIGIKAEKRETPGHPMVV
GHVGEENTKGPHLLFYGHYDVQPVDPLNLWNTPPFEPQLEETPNGTVIRGRGASDDKGQLMTFVEACRAW
QAVHGTLPCRITFFFEGEEESGSPSLIPFLEAAKEELSADIALICDTSMVARGVPSVASQLRGMMKDEFT
LIGPKIDLHSGHYGGPGLNPLREISHIIASFHDPDTGAVAVEGFYEGVPEVPADILRQWEGCGFDEKDYL
SNAGYTEAHGEKKYSTLEQQWARPTLEINGLWGGYQGAGTKTVIPSEAHCKITCRLVGDMDPADLRQKIR
KHVEDRLPTDCTVKWDLDLDGAPAYVIDTTRPEFEAARGALTEEWNREAVFSGMGGSIPVAGYFKSILGM
DAMLIGFANEDDAIHSPNEKYDLESFHKGIRSWARVLDALSKA
>gi|161899030|ref|YP_612855.2| 5-aminolevulinate synthase [Ruegeria sp. TM1040]
MTVDYTAQLDAAIERLHEEGRYRTFIDIERRRGQFPHAVWTRPDGSEQDITVWCGNDYLGMGQHPVVLKA
MRDAIDATGAGSGGTRNISGTTVYHKELESELADLHGKEAALLFTSAYIANDATLSTLPKLLPGLIIYSD
ALNHASMIEGVRRNGGAKRVFRHNDVAHLRELLEADDPAAPKLIAFESVYSMDGDFGPIAEICDLADEFN
ALTYIDEVHAVGMYGPRGGGVTERDNLAHRIDIINGTLAKAYGVMGGYIAASAKMCDAIRSYAPGFIFTT
SLAPSIAAGAAASVRHLKTAQDLRDKHQEQARYLKTRLKMMGLPVIDHGSHIVPVIVGDPVHTKKLSDML
LSDFGIYVQPINFPTVPRGTERLRFTPSPVHGPSEMDHLIRAMDKLWSHCALNRAELAG
>gi|99080702|ref|YP_612856.1| hypothetical protein TM1040_0861 [Ruegeria sp. TM1040]
MIGRLTQRTFGRRDETPEPPRGFDDFELRLGDMMRGERATMGKSLLDVQRELRIKASYIDAIENCDPSVF
DTPGFIAGYVRSYARYLNMDPEKAFGAFCAESGFSVAHGMSSEASVRKPRDISASSSKGLGGDAFSNSAT
PFVPVSDGVFSQIDPRAVGSVLVLASVIGGLAFGGWKILHEVQQVTFAPVEQTPEVLAELDPLETASLVA
SDLTEDPASEALDRLYRPQALDVPVLVARDAPISTLDPRAHGNFAGFEQPGISLADAMVPANEQTDLAVP
QVLEARAPSVEMIAVRPSWVQVKAADGSVIFETIMEPGQTFDVPLTEDAPRLRTGESSAIYFAVNGEHYG
PVGGRGQVTKDVELSPDALSGRFEIADLEAEQNQALATMVAQLRATQQTPVDSAD
>gi|99080703|ref|YP_612857.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Ruegeria sp. TM1040]
MSMNHIRPWRNIERRKSRQIHVGNVPVGGDAPIAVQTMTNTLTTDIKGTIAQVQAAADAGADIVRVSVPD
EASARALKEIVRESPVPIVADIHFHYKRGIEAAEAGAACLRINPGNIGDEKRVAEVIKAARDHNCSIRIG
VNAGSLEKHLLEKYGEPCPDAMVESGLDHIKILQDHDFHEFKISVKASDVFMSAAAYQMLADATDAPIHL
GITEAGGLMSGTIKSAIGLGQLLWMGIGDTLRVSLSADPVEEVKVGFEILKSLGLRHRGVNIISCPSCAR
QGFDVIKTVETLEERLEHIKTPMSLSIIGCVVNGPGEALMTDVGFTGGGAGSGMVYLAGKASHKMSNDQM
IDHIVEEVEKKAAALDAQAAEDMKAAE
>gi|99080704|ref|YP_612858.1| DSBA oxidoreductase [Ruegeria sp. TM1040]
MIAPTRMALIAACALSLSAPAARALDLNDMSDSEKAAFGDAVRSYLLENPQVILEAVDVLEQQQQQAEAA
RDDALVGANLQEIQNDGYSWVGGNPEGDVTLVEFMDYRCGYCRKAVPEIEALLAADKNIRFVIKEFPILG
EASVLSSRFAIATKLVAGDDAYKSVHDTLIAFQGEPNEVALRRMAEGLSLDADAILAKMNDAKVTEQIQR
TRSLAQTLSISGTPTFVLEDEMLRGYLPADQLQIMVEDIRAGRS
>gi|99080705|ref|YP_612859.1| peptidase M48, Ste24p [Ruegeria sp. TM1040]
MSFERVFSLASIPCARLFRLLAAAVGRGCGRGPVLAACLAAVLAFAPIAAQAQSIRLLRDADIEHGLTEL
ARPILTAAGLSPRRVRILVVNDSSFNAFVIDHRAIFINYGLILKAESPEMLQALIAHEAAHIANGHIGRR
VQNMRSASTAAGLGVALGLLASAAGGGKAGAGVAFGVQSSALRNFLSHTRAEEASADRSAIGFMTAAGVN
PKGMVELHRIFAGQEVLSTGSQDPYMRSHPLTRDRMRAAEAYVASAGAAAASDPAAAYWLARVQGKLSAF
TRAPSWTKRRVASEGYADVKRMRLAVAHHRQNSFSRAQKEMQALLATRPKDAYYHELWGQILYENRRWGA
AVSAFGTAASLSPNEPLILASLGRAQLAAGNPRAALKTMEKARGLDFRNATLLRDMSLAYAQTNQTGMAA
LVTAERYALQGRLKDAGPHAKRATGLLAKGSPAWRRAQDVLIAFEQDEKRNQK
>gi|99080706|ref|YP_612860.1| aminotransferase [Ruegeria sp. TM1040]
MRNSSRSKVDPFIVMDVMEAARKAEEQGRHIIHMEVGQPSTGAPEAARRALADALERDSMGYTVALGLPA
LRKRIAALYGEWYNVDLNPERVVITPGSSGAFILSFTALFDSGDRVGIGAPGYPSYRQILSALGMQPVDI
QTAPEHRLQPVAADIRDQNLAGLMVASPANPTGTMLDKPALSALMEAAQAEGASFISDEIYHGIEYEAKA
VTALEISDECYVINSFSKYFSMTGWRVGWMVVPEDHIRTVERIAQNMFICAPHASQVAALAAMDCRDELE
ANLAVYARNRALMLEGLPKAGFSKIAPPDGAFYVYADVSDLTQDSRAFAAEILEKAGVAVTPGLDFDPVR
GATTLRFSYARSTADIEEGLARLRAFMEARG
>gi|99080707|ref|YP_612861.1| N-acetylmuramoyl-L-alanine amidase [Ruegeria sp. TM1040]
MRALFAKLWLCLTLVHLALLPAAAAAQGFSALARVLPEDSSLWDTGAGVELELGLSQGVPYRIFALDDPY
RLVLDFQEVDWTGLQAEDFDRSELIERTRFGGYVPGWSRMVLTLTEPMQLRTAAMDIDPETSAAKLKLAL
APIDAETFAATAGAPYDPRLDLPMPAELKPRAPRDDDAPLVVMIDPGHGGLDPGAEAEGGIAEKDLMLAF
AYDLGERLVRSGAFEVLLTREGDYFVSLERRIAMAHQQGADVFISLHADAVTEGMAHGTVVYTLSESASD
VASAKLAERHDRADLLSGSDLSAADDVVTDVMLDLARQETHPRSTALARSVIEALMEAGGPVNRRPLRSA
GFSVLKSADIPSILIELGFMSSPRDLELLTDPDWQAKTAQSILNGLLVWREEDAARRALVRQ
>gi|99080708|ref|YP_612862.1| penicillin-binding protein 1A [Ruegeria sp. TM1040]
MIRFILSIFGSIFSTITLGIGVVALSIGAIFWVYGRDLPSHESLAQYQPPTISRIFSGEGQLIDEFAKER
RLFTPSEEIPALVKQAFISAEDKNFYSHAGYDARGILAAAVEAVKSRGENVRGASTITQQVMKNFLLSGD
RRAERKIKEIILATRLEETLSKDKILELYLNEIFLGQNSYGVTAAAQTYFNKTLGELEPHEAATLASMPK
APSDYHPVRQRERLLNRRNYVLREMKENGYITEAVYEVERNQPLRSVQNGDFDAFRTALPPRDYFTDEIR
RQLSVDFGEGEFFTGGFTIRATIDEEMQDEAALAMRKGLEEFDRSTGIWQGPIAEIDPARLASEESWREA
LSEAEAARDIITEDGAWHPAVVLKVEDNALTVGVEGFGGTGTIPRSDIKWMKGNFFDNFKPGDVIHAMAI
REGEAVKHWSARQVPEVQGGFVAMDVNSGRVLAMQGGFSYQHSVFNRATQAQRQPGSSFKPFVYAAALDS
GYSPATIVIDAPIEINTPQGVWRPKNSTNKFYGPTPLRTGIEMSRNLMTIRLAQEVGMPVVAGYAERFGV
YDNMGTFLANSLGSEETTLYKMVAAYAMFANGGERVEPTLVDRIQDRFGRTIYRHDDRDCVDCSATELEQ
GIAPKIVTNREQVMDPITAYQLTSMLKGVVDRGTASSVINLPVPAAGKTGTTNDARDAWFVGFTSNIVAG
CYFGYDNPRPMKGGRGYGGTLCGPVFQQFMQKATEKYGGGPFDVPPGGHFIKIDRYTGGRLPNEAGGANV
VAEYFRDGEEPIFGLTFDGGFGMGSNLPLFEEVTESGRQVTTSSGGTAVLGPKASFGDVSSGGLY
>gi|99080709|ref|YP_612863.1| peptide chain release factor 2 [Ruegeria sp. TM1040]
MRAEIQTIVADIEKSLDLLAQRMNWETAEFRLEEFNARVEDPNLWDDPAAAQKLMRDRQSLVDAMDTYKS
IRQDLQDSVELIELGEMEEDAEVVKDAEDTLKALKEKAAQKELEALLDGETDPNDAFLEIKAGAGGTEAC
DWASMLARMYVRWAESRGFSVELQEEQAGAEAGIKSATYQIKGHNAYGWLKSESGTHRLVRISPFGKGTR
ETSFAAVGAYPVIDDNIEIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHEPTGIVVTSSEKSQHQNR
DIAMKALKSRLYQLELDRRNAEVNALHEAKGDAGWGNQIRSYVMQPYQMVKDLRTNHETADTKGVLDGDL
DGFMAATLAMKVAGKSRADAQGED
>gi|99080710|ref|YP_612864.1| major facilitator transporter [Ruegeria sp. TM1040]
MKCAIAPDGATADAVAMTHDIAFTFETLPEAARRHIRVFQIHQFLDRFAMGLTVAVVALALTDRGMDLFQ
ISLLFGIYSLTTMTTELPFGGLADSIGRKPVFLGAVGASLMALALFLLSRDFAVLAMSFAFVGVGRALRS
GTLDAWFVEGFRAHAPDVDVQPALAKAQWANAMGLAVGAVMGGLLPDAVGTLGIRYGISIYDVSYAASFA
VMVGVFAYTLRVIIEPPRPRDARALQQGFVRVPAVIAEAGALALKHPVLSLLLTALALFLMATNPVEVLW
PTYAKPMLDADYANTLIGALTAGYFFAIAIGAGISPRISRLFRRRSAVVLAALFACLAAAQVVLAIQGSV
AGFVCMFLIYAVLLGASETPASSLLHACVADRQRSTMLSLRSLIQQLGAAVGLLMAGGLAEIYTTSLAWI
IGAVFLLIAVGLCLILAKRLAGSGR
>gi|99080711|ref|YP_612865.1| amidase [Ruegeria sp. TM1040]
MLCDRTASDILKDLARGALTVEALMQATLDRIGERNPALNAIVALRPTEDLMAEARAADAVPRAERGPLH
GLPMAIKDLSNAKGLVTSQGSPIFAGQVAQEDDIFVARLRAAGVIVIGKTNTPEFGLGSHTYNPVYGATG
NVVDPSRSAGGSSGGAAVALAAGMVALADGSDMMGSLRNPAGWNEIYGFRPTWGWIPSEPVGDVFLHPLS
TSGPMARTPEDLALLLDVMSGSDPRLPLARGAETVSPLKAPKPLRLGWLGDWGGAYPMDDGLLETCDAAL
QTFVEQGHTVERIAPPYPAEKIWQSWITLRSFAVAAGLRGLNNRRADLKEAALWELDRGLGFSAQEVQEA
SDLRSGWMRAAARMFQRYDAVVLPTAQCWPFPIDWDYPKEIAGKPLDTYHRWMEVVVPASLLGLPALAVP
AGRGGADHLPIGLQIIGPHGSDGQILGLGQGYHTARAAL
>gi|99080712|ref|YP_612866.1| hypothetical protein TM1040_0871 [Ruegeria sp. TM1040]
MTQTTETPTAPLTRPLGVPDLRPVSAGTLRDALRAGWRDFCAKPIYGLIFAGFYVLAGWVMAWVTLQTQT
SYWLVLAAIGFPLIGPFAAVGLYEVSHRIEAGRRLDAGRIFGVIFEQSRRQLPSICAIIIVVFLFWFFLG
HMIFALFLGHMPMVNVSTSTEVFLTPQGLMMLGVGTVVGALFALLIYMITVLGLPLLLDREIDFVTAMIT
SFTYVQANLLWMLAWAVLIATLTFVALLPGFFGLLVVLPWLGHSSWHLYRLLRVEEDPT
>gi|99080713|ref|YP_612867.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MLKRSRSPAELRTVFGDNLRKLAKDYPSISELSRRLGINRTQFNRYLSGESFPRPDVLDRICGFFDVDAR
ILLEPVESLDRPDGSPLQSDYLRDFIDAGLMRVTEKVFPSGFYRFTRRSFISDESYVLGIVHVKRIDGVT
YVRGYEPRAGMRYQGLSTDGPSREYRGYMTCHEDGVAFVLSRRNTLTYSFNYLARVSAAENSLWTGYVTR
TIRESESGDRALRMIYEYLGTDVSAAIKAARGCGFTTAPEIIPFHRRLLQLGKPFR
>gi|99080714|ref|YP_612868.1| hypothetical protein TM1040_0873 [Ruegeria sp. TM1040]
MIGVVVWADTAKLKAVIWCEDQRDLAYFIQREEHAQTVALNKGDLVKFESRYESGLRMAGRVQVVEPCAE
PHLSDALLDQPAPTPETVTESEICENAHQGAEVACLSIPDRIKSRSDGHRPSAERKSAKILAFPERLRA
>gi|99080715|ref|YP_612869.1| acetolactate synthase 3 regulatory subunit [Ruegeria sp. TM1040]
MSALHIKKGATKHSAYNLRPNFSDTQERHTITVLVENEPGVLARVIGLFSGRGYNIDSLTVAEVDHTGHL
SRITVVTTGTPQVIEQIKAQLGRIVPVHEVTDLTVAGPFVERELAIVKVVGEGEKRVEAMRLADIFRAKV
VDTTLNSFIFEITGTPDKIDAFADLMRPLGMTKIARTGVAALLRGE
>gi|99080716|ref|YP_612870.1| acetolactate synthase 3 catalytic subunit [Ruegeria sp. TM1040]
MTREMTGAKMVVQALKEQGVDTVFGYPGGAVLPIYDEIFQQNDIRHILVRHEQGAVHAAEGYARSTGKPG
VVLVTSGPGATNAVTGLTDALLDSIPLVVLTGQVPTFMIGSDAFQEADTVGITRPCTKHNWLVKDTDKLA
STIHEGFHVATSGRPGPVLIDIPKDVQFATGTYEPKKPSASHYQPVVKGDMEEITELVAAMETAKRPVFY
TGGGVINSGPAASQLLRELVEATGFPITSTLMGLGAYPASGKQWLGMLGMHGLYEANMAMHDCDLMINIG
ARFDDRITGRIDAFSPKSIKAHIDIDPSSINKVIKADIPIVGDVGHVLEDILKVWKSRGRKTNAEALAKW
QGQIDEWRAVKCLTYEMSETTIKPQYALERLEALTKGRDRYITTEVGQHQMWAAQFLGFEDPNRWMTSGG
LGTMGYGTPASIGAQIAHPDALVINVAGEASWLMNMQEMGTATQYRLPVKQFILNNERLGMVRQWQELLH
GERYSHSWSEALPDFVKLAEAFGAKGIICSDPKDLDDAIMEMIEYDGPVIFDCLVEKHENCFPMIPSGKA
HNEMLLGAAETQGVIQSGGAVLV
>gi|99080717|ref|YP_612871.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040]
MPGRASDEERQTDNIGRQEMNGPIRVLIVDDHPMVAEGIQSILESYGDIEVVGAVSSGREAIARAEALVP
DVILMDLNMPDVGGLSATEIIQERCPEIRVLILSMHDSPEYITTALSHGAVGYVLKDVQPEEIKTAIDAV
MRGEQYLCTGAAGSLSPQSQTSREALTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGI
SSTAGLTRYALEHGVLQGTGRGI
>gi|99080718|ref|YP_612872.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MIRRMFRPNYAQKLSLLATLPLIVACLCIATLVAYQSRAMAEREIQVLERQLIEAKKAELRNYVTQARNG
FMHIYGPAAPDDTEAKRKVTQILSAMIYGQDGFFFVYDYDGTNLVSPRQTEFINRNWAGLTDANGVPVVN
TFIDIARQGAGWHSFMWEKPSTGEEAQMIAYVVGLQDWQWAVGTGVFIDDVIASIASSRQEVENRVRRTF
LYIGAITLVALIAVFGSGMLLNIRERRLADAKLKELTQRVFDAQEEERGRVARELHDSISQLLVGVRYAL
ETVRRRIGRGEFETTAAPLDKGVEGLATAITEVRRISRDLRPGVLDDLGLGPALKALTDDFAARTGIETD
FTTVVFRNRLDQEAKIALYRIAQEALTNIERHSGATRVTMDLRGHENGATMRISDNGSGLPTEEERSRSG
IGLRNMQERMEQLDGTLRILSFRAGRDRGTVIIASLPLSHLLPPGDELAAHRLP
>gi|99080719|ref|YP_612873.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MDRRSFLKTSAIGGSAAAASAALAAPAYAQGNRTLTMVTTWGRGLAGVHDSAQRVADSITAMTDGALTVD
LKAAGELVGAFEVFDAVTAGQADMYHGADYYFVGQHPGYAFFTAVPFGMTAQELANWYYQDGGMELHDEL
GQIFGLKSFLGGNTGAQAGGWFSKEINSPDDFNGLKFRMPGLGGKALGKLGASVQNIPGSEVYQALSSGA
IDGTEWIGPWADEKAGFQEITKTYYTAGFHEPGAGLSVATNRDVFESLTPGQQKVIEIASAEAHQWNLSQ
FLANNGAALQRLQAGGVKVMEFPDSVWDAFGKASMEVHQENMGDDLYKKIYDSAMASMKASSGWINQSSG
TYVAQRDRVLG
>gi|99080720|ref|YP_612874.1| TRAP-type mannitol/chloroaromatic compound transport system small permease component-like [Ruegeria sp. TM1040]
MQDDMSISFFGAIGGFLWWLASNVFGAFYNIGYAVTHPELWLDWLTWAGTPEDKASVMRFVYYGGSVEFF
FVVFTTLLVLTGLGIYYRGFMWGMVRGLEGFANTLGRFFAWAGLLMVLQQIIIVFMQRVFARPDMSFGLG
IALEKDISWFAEELKLYNALVVCFCVTYTFVQGGHVRVDLIYAGISHRAKRVVDMVGSLIFMMPMAVITW
MYGWYFLWRHLIVPKPSASDQLDRLVMKARALRWNVETIGFSPNGFNGYFLFKILLVAFAGLVFLHAVAF
FYRSLLEYIEGEESEGKYLDKDTLGEGEEAYEGAH
>gi|99080721|ref|YP_612875.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Ruegeria sp. TM1040]
MLFGLDGVEIGLIIVFLCLFGGILSGFPVAFAIGGAGVISFGIIAALDSAGLLIHQAIDTSSQAYRDIVS
SGVKPDVISVFRYPDLPRIAEPVFPQGWEVAMDRNVSFIVNRINERVLAGASIETLLAVLMFVLMGITLE
RSKIANDLLTTMARVFGPLPGGLAVSIVVVGAFLAASTGIVGATVVTMGLLALPTMLRNNYSPELATGVI
AASGTLGQIIPPSIVIVLLGTLAGDLYSTAQENRAQEAGCTDALTYLGEPAVVSVGTLFQAALLPGIMLA
LLYALYAFGYALLNPHKAPAVQMGAANEEPITRAESLTWFLGVPAALIVGTVLLNSVNLVGSQNITVSAF
SDAGQTASLRTNVGPECQAAMIDLHGQEAWDAAVAEQVEIDAAGGVAEATKLSEEELAQALEQKIANAAP
IGTGIATIIVLLGLTLAVGRGVAPSRDAKPLIVGAIGLLLLALIDVIAIGPTTSASATVAWMLLPVLLAL
YGCKEAAARCARNDLIRVVFPPLVLIVAVLGSILGGITNPTPAAALGAGGAIMLAAYRRLKDEGQSGNII
IWATFAVILAILTGMNFDLRINQDVVPAESYAAFFFAYSCYLFALFGLLYGIWVLFKGGVMTPIVRETAK
VTSMVFTILIGSQLLNLVVISFGGEHYIQQFLKSFDNELTVFLIVMLVLFILGFVLDFLEIIYIVIPIVG
PVIYGGSFDPKWVTIMVAVNLQTSFLTPPFGFALFYLRGVAPREVTTGHIYRGVLPFVLIQVLGLAILWF
FPSIVTIVPSLIPN
>gi|99080722|ref|YP_612876.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MQFLHAVSLVVPDYDAAIAFYCQTLGWTLAEDVDQGRKRWVRILPPGATAGSLILARAEGPAQEAAIGNQ
FGGRVGLFLATDDFARDHRAMTAAGVLFEEAPRVEPYGTVAVWRDPFGNRWDLIQFA
>gi|99080723|ref|YP_612877.1| arginyl-tRNA-protein transferase [Ruegeria sp. TM1040]
MRHTLPIAPQFYVTAPQPCPYLEGRMERKLFTSLQGDGVEQLNNSLSQQGFRRSQNVLYRPSCSDCSACM
SARISVADFKPTRSQRKTLNRNRHLDRRATSPWATEDQYALFRDYLDQRHADGGMADMDVFEYAAMVEET
PIRTRVVEYTDLDTNALTAVSLTDVLEDGLSMVYSFYAPNLPQNSLGTFMVLDHIEIAREAGLPYVYLGY
WVPGSQKMGYKAKFSGLEVYFGGEWTPLKDPESFTAEDHPLSTAPVAEQVANIQLPQGTSPKKR
>gi|99080724|ref|YP_612878.1| RDD domain-containing protein [Ruegeria sp. TM1040]
MTALPDPDLQAEFYSGVTAKRLFAFLIDTALIFAIAAVIVPFTAFLGLLVWPMLYLTVGFVYRVATLANG
SATLGMRFCGIELREHSGARLDGGSALLHTVGYTVSMAVPVLQIISILLMLTTARGQGLSDHLLGTAMLR
RRA
>gi|99080725|ref|YP_612879.1| hypothetical protein TM1040_0884 [Ruegeria sp. TM1040]
MTSYSTNLPPTPQQGWLARSESWLDSKGKGAWIAAMVLGFVFVWPVGLAILAYMIWSKRMFNSSCRRRST
HMHRGFHAMKSSGNGAFDAYKADTLARLEQEQTDFEAFLGRLRAAKDKAEFDQFMDERAARPDEANDADD
APQDGARPSKA
>gi|99080726|ref|YP_612880.1| glutamate-ammonia-ligase adenylyltransferase [Ruegeria sp. TM1040]
MSQSLSHSLKLHRCPRPFDPAISAEVVAEFAHLSPEFQALLGGTAGSSPYLNTLIRSEQAWLEGALLNPE
AARDAEFQTCRAAPPDQVKSILRAGKRRIALLCALCDLSGHWPLEEVTGTLTRFGELAVDVALKAEIALL
IKRNKLPGMGEEDIATAAGMSVFAMGKMGAYELNYSSDIDLICLFDETRFARDDFLDARQAMVRATRNMS
AALNDRTAEGYVFRTDLRLRPDPSVTPVALAMAAAEHYYESLGRTWERAAYIKARACAGDIAAGEAFLKT
LTPFVWRRHLDFAAIEDAHNMRLRIRENKGTGGPITVLGHDMKLGRGGIREIEFFTQTRQLIAGGRDPSL
RVRGTVEGLEALAAAGWITSEVAATLAGHYRAHREIEHRIQMVHDAQTHRMPTSQEGLSRVACLMDVEAE
SFVSGLRDRLSEVHRLTEDFFAPGSSAKPAEPLPEALDQSVIARWPSYPALRSDRGARVFERLKPELLSR
LARTANPKEALLALDGFLAGMPAGVQLFSLFEANPQLIDLLVDIVGTSPALANHLSRNASVFDAVLDGGF
FAEWPGRDWLIADLEQALDGEGDYERQLDLTRRWHREWHFRTGVHHLRGLIGAETAGQQYADLADAVITA
LLPKVAAQFASKHGPMPGRGCVILGMGSLGAGQLSATSDLDLIMIYDPLEEDSSDGKRPLAVRPYYARLT
QAMVTALSAPMSQGRLYEVDMRLRPSGNQGPVATSWQSFTQYQEHDAWVWEHLALTRARVVAGEETLARD
LETFRCAFLAKPRSRQEVLSEVIEMRRRLAAAKAPEGVWDAKTGPGRMLDIELIAQAGTLLAGRSTRAVA
EGLSAGVASGWLSDAQAQGLRRSYALYWSVQGATRLIAGKGSDGAVRGEGGAAFLLRSTGFDDLSLLQQA
LEDAYAEAAAIIEAALGPVSQNPDAQEPESQSNDDQDDTPLS
>gi|99080727|ref|YP_612881.1| hypothetical protein TM1040_0886 [Ruegeria sp. TM1040]
MDGLDGAQCRSIFLDWALSTPVDLDTEAALSELLAHYGEAFPDHPMTQVLRDGLQGGARPKRRGGWRSRE
RAPFED
>gi|99080728|ref|YP_612882.1| SAM-dependent methyltransferase [Ruegeria sp. TM1040]
MTDASLTPPARPRVKMKPKSNARAIRHGFPWVYANELVTDRRTKKLAPGSLAVLEDEAGRSLGLVAVNPE
SKIIARMLDRNPEALIDAEWFAARLSRAAALRGQLYDAPFYRLVHAEADGLPGVVIDRFGEACVVQPNAA
WAEAHLEALTQALGEVTGCTVILKNASGRTRGLEGLDDENAVLKGAAPEEPVPVVMNGATYMADLTGGQK
TGLFYDQRDNHAFAARLVAPGAEVLDVFSHVGGFGLAMLAAGAGQATCVDGSAAALDLAAAGAAASGHGD
RFTARQGDAFDVLAALGAEGAKFDVVICDPPAFAPSKQALEAGLRAYERVAKLAAPLVKPGGYLGLCSCS
HAADLTRFRNASARGIGKGGRRGQLLHTGYAGADHPQMPQLAESGYLKAVFFRLD
>gi|99080729|ref|YP_612883.1| hypothetical protein TM1040_0888 [Ruegeria sp. TM1040]
MKLLLDTCVLYPTVMREMLLGAARAGHFVPLWSARILGEWERAAVKLGPAGAAQATAEIALLKAAWPKAE
VAPAPGLEARLWLPDQHDIHVLAAAIAGHADGIVTVNAKDFPRQTLAEEGLTRSAPDELLYDFWLKHPEG
IEAVGQAVLAEARRLSGEDWQMRALLKKARLPRLAKALA
>gi|99080730|ref|YP_612884.1| luciferase-like [Ruegeria sp. TM1040]
MRYSVLDLAPVPEGATTAEALANSADLARHAERWGYHRYWLAEHHNMPGIASAATAVMIGHIAQATSTIR
VGAGGIMLPNHAPYMVAEAFGTLVEIHGDRIDLGVGRAPGTDMAAMRAMRRGLQDSGDRFPEDVQELISH
LGPRRTESNLRAIPGEGTEVPVWMLGSSLYGAQLAAMLGLPYAFASHFAPQALSQAFEVYRRQFRPSKTL
QKPHAMLAVNVFAAATDAEGIRLRTTMQQAFARLRLGTPGKLPAPVENIADVLTPDILAGVNQALTISAV
GAKDSVREDLARLIETYQPDEVILTGQIHDHDARLRSFEIAAEILGNS
>gi|99080731|ref|YP_612885.1| peptidase M48, Ste24p [Ruegeria sp. TM1040]
MLRLTPILLAVIYGLVMYRLSVWRTHRELSARSTELADPHLKRMTDRLAAALELPRIPVYIYEIDPVNGL
AAPDGRIFITRGFYRKFQSGEVTDAELASVIAHELGHVALGHAKKRMIDFSGQNALRTVLMMVIGRYIPF
VGPWIAGVLTNLLAARLSRGDEYEADEYAAALLTKAGIGVEPQKDLFRKLEELTNSRAGMAPAWLMSHPK
TEERIAALERLEDKWREA
>gi|99080732|ref|YP_612886.1| hypothetical protein TM1040_0891 [Ruegeria sp. TM1040]
MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDRAFAATFEGLD
QIPASAVMDAVDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKERLKEQEGRHQGGNKWIGTAGT
SPFGAYGYNPEGVRIGQKESRHQRAVKVWDKREFKNLDGDVELGTRNIKVALKRLRRWVREGAQEELDLD
GTIRATAENGYLDVKTRPERHNAAKVLLFLDVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGV
WRDNRRRWDAQTPTHEVLRTYGPDYKCIFVGDASMSPYEISYPGGANEHWNKEAGQVWLERARDQWNSHL
WINPVPEKYWGYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR
>gi|99080733|ref|YP_612887.1| hypothetical protein TM1040_0892 [Ruegeria sp. TM1040]
MIVILALLVGAALGAYKARKRGGNLADMLQYGAVYGMIFGILGLFATIVTHRMMI
>gi|99080734|ref|YP_612888.1| hypothetical protein TM1040_0893 [Ruegeria sp. TM1040]
MPRRTRDVHVTFSSPWGALERVLPSLRALRLKTVFLGCALLLACTPAETPPSRASASLAMDLPPIRTFAT
RAASPPLRSNADMARDFLDLHFRLEGGTTMPVFTRFEGPVSVAVTGTAPATLRMDLEALLTRLRREAGIN
VRLRTQGEVPASVTIEAVSRARIQRLLPHAACFVVPNVSSIEEYRRARRLPQTDWKNLRNRERLAIFVPN
DVNPQELRDCLHEELAQALGPLNDLYRLRDSVFNDDNVHAVLTGFDMLMLRATYDPSLKTGMTREEVAAR
LPAILSRLNPAGARRAPAPLPQTPSAWTSAVETALGGSATRAQRVRAAHTAAHIAEAQGWQDHRRAFGHF
LIGRTLETSAPEQAEAHFRTALNYLGTGPDTAPHRALNQSRLAAYALRAGNIARAEQLIDTAYGAAQTSQ
NAALMATLLTLKAHIAESRGDRRRATALRAESAGWALYGNGPGAVIAMTPREVAAAGPSRRR
>gi|99080735|ref|YP_612889.1| ATPase [Ruegeria sp. TM1040]
MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVKSTTRAQQGLY
EYDAVSRLRDSQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKADIEFPNDLLQELDKMEFHVY
ETGETIRAKHRPVMIITSNNEKELPDAFLRRCFFHYIRFPDAETMKKIVEVHHPDIKPDLLSAALTQFYE
IRDTQGLKKKPSTSEVIDWLKLLLAEDLSPEDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR
>gi|99080736|ref|YP_612890.1| TraR/DksA family transcriptional regulator [Ruegeria sp. TM1040]
MLGKFEETKMMGQTEGAEMKQDVFLPEDYRPAEDEPFMNERQMEYFRRKLLNWKAELLDESRDTIEGLQE
NTRNIPDVADRASEETDRALELRTRDRQRKLVAKIDAAIRRIDEGEYGYCDVTGEPISLKRLDARPIATM
SLEAQERHERREKVHRDD
>gi|99080737|ref|YP_612891.1| monooxygenase, FAD-binding [Ruegeria sp. TM1040]
MKLDKLRVTVVGAGIGGLAAAYLLQRAGAQVTVLEQAEEISEVGAGLQVTPNGVAVMRAMGLADDLAWCA
QRARAVVLRHHREGREVLRLDLDQYAHDLRYYFVHRADLITLLADAVRRSGVQVRLLQKVNAVVPGARPK
VQLANGDTCCADLVVGADGLHSRVRPALNSVAAPKFTGQVAWRATIPNRLDLAAEAQVFMGPGRHLVAYP
LKDGSLVNLVAAQERRQWAEESWSHGDDPENLRRAFSMFGGAAAELLADVRDVKLWGLFRHPVAQSWGRD
GVALLGDAAHPTLPFMAQGANMALEDAYALVQSLLGAEGFEAGLSAYQARRHQRVSKVVEAANGNAWKYH
LRSPLSWPAHQILRVAGALAPQRMVSQFDWIYRHDETAV
>gi|99080738|ref|YP_612892.1| exodeoxyribonuclease III [Ruegeria sp. TM1040]
MKIASFNINGIKARVNALTDWLDEAQPDVAVLQEIKSVDEAFPRELFEERGYNVETHGQKSFNGVAILSK
LPLEDVRRGLPGDESDEQARWIEATVVGKQALRICGLYLPNGNPVELNDDGTPVEGGKYAYKLGWMERLK
ARAAELMAEEMPALMAGDYNIIPQAEDAKRPEAWREDALHRPESRAAFQRIVNLGFTEAFRTRTRGPGHY
TFWDYQAGAWNRDDGIRIDHFLLTPQAADLLRDCQIDKDIRGREKPSDHVPIWVDLDL
>gi|99080739|ref|YP_612893.1| hypothetical protein TM1040_0898 [Ruegeria sp. TM1040]
MGCIPYQRIGGGFGNTCGTVKRYLSTCVLLIETGGADETHAFTGKCTCIFCNIGNGFLQSAHGTSPSFKV
IDTQNLPPEKNKTREFQHHADKNAFTLH
>gi|99080740|ref|YP_612894.1| hypothetical protein TM1040_0899 [Ruegeria sp. TM1040]
MGQVLSFRNAQEKKIREGAPFLLNSFGSFRKDPLDVLWMKENAELLNVLETTGCTLNEGALEPLLPFYEG
SLRHLNFFRQYYRFILSICLDLEDLGVPGQRAEIMSDWIMRQDVAAAELSDLQRAEARRLLARRGFELPD
VEGLDDRLRAFMQRSGGFAVPNRKAAYELTHIVFYLTEYGRAPLELEETERQSLLFAGLIAFLDQDADLL
AEICIALRFCNEAPPQEWSRWLEQHTGKFTLRAAPGRVGQDDYHPYLMCNWFQLLVGRTGFSEAQCEGSV
VIEGPGRPGALRGMSMALYTLLDQAPGTWARVRAPLLQSLSSEEGEVLRRAEESTPLFEPFFETFSRFGQ
VSSA
>gi|99080741|ref|YP_612895.1| hypothetical protein TM1040_0900 [Ruegeria sp. TM1040]
MSPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPDGLRTNCKRAM
LLRSGATVLSCTSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIRPVVWLALSLGVIGILVMRPT
VQVGGALGSALALSGVGFGTLSIIMARYISRYESNVLAQVFYPNLTLGLVMLCVLPLVWRPMTAADLALV
GAYAVLLFGARWLLVLALRQLPAYTVTPLLNLQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWD
QAQTQTPVRTEAPMATIASDKYRRGNRAPARGVRRNDRRSGAWRTRRRVQSGR
>gi|99080742|ref|YP_612896.1| HesB/YadR/YfhF [Ruegeria sp. TM1040]
MQLPPKVTDRAFDRLAEIGAADQGQALRIAVEGGGCSGFQYEIALDTPKSDDLVLEGKGQKVVVDEISLP
FLENAVIDFTEELIGARFTIENPNATSSCGCGTSFSM
>gi|99080743|ref|YP_612897.1| deoxyguanosinetriphosphate triphosphohydrolase [Ruegeria sp. TM1040]
MYAPYATMPDRSRGRAVPEEESSFRSPFQRDRDRIIHASAFRRLKHKTQVFVEHEGDNYRTRLTHSIEVG
QVARTIAGALGLNQELTEAVALAHDLGHTPFGHTGEDALHEMMAPYGGFDHNAQAIRIVTALERHYAEFD
GLNLTWETLEAIAKHNGPVVGELPWALAACNRGIDLELHTHASAEAQVAALADDIAYNHHDLHDGLRAGL
FTDDDVCSLSIIAPAYAEVDEIYPGLDHNRRRHEALRRFFGVMVSDVIETSRRKIAASGAQSVEEIRALD
HAVVTFSDEIWTQLRELRAFMFTRMYRAPSVMVVRERVAVVVKALFAYYLENTMAMPERWHGDIRKAETE
TDRARIVSDYIAGMTDRFALQLYDRLALGA
>gi|99080744|ref|YP_612898.1| arginyl-tRNA synthetase [Ruegeria sp. TM1040]
MNLFTDIRTLVIDSLAAMTAEGALPEGLDFANVTVEPPRDAAHGDMATNAAMVLAKPAKMKPRDIAEALA
AKLAQDKRITSAEVAGPGFLNLRLDLSVWQDVLGKALNAEEAYGRSDMGQGKRVNVEYVSANPTGPLHVG
HTRGAVFGDALASLLDFAGYDVTREYYINDGGAQVDVLARSAYLRYLEAHGQSVEFPDGTYPGEYLKDVG
AALKDKFGDRFVGQPEETWLEEVRNFATDMMMDLIREDLALLGVEMDVFYSEKSLYGTGRIEAALESLDA
KGLIYEGVLEPPKGKKPDDWEPRIQTLFKSTEHGDDVDRPVKKSDGAWTYFAPDIAYHYDKVSRGFDMLI
DIFGADHGGYVKRMKAAVSALSDGKVPLDVKLCQLVKLFKDGQEFKMSKRAGTFVTLRDVVDAVGADVTR
FMLLTRKNDQGFDFDLDKALEQSKDNPVFYVQYANARIHSTLRKAREAGIACDEATLSGADLSLLTHDAQ
LAVARKVAEWPRQVEIAARTNEPHRIAFFLYELASDLHGLYHLGKSEESLRFVNESSELATHANLALARA
VSIVISAGLGILGVKPAQEM
>gi|99080745|ref|YP_612899.1| sporulation related [Ruegeria sp. TM1040]
MAAFLGAAASLALVVSISMWGYKLIMRDVSGVPVVSALSGPMRVAPENPGGELADNQGLAVNSVAANGIA
EDPADRLQLAPQAISLTEDDQPIPVLTEAAEAQAALEAEALAPAVERETAAIEAGNDVSPLEQRSNDIDA
LVASLTEGAVPLEDLRETSASITQPEPLAAAEVAAITTVPAAVRNAPGVRETPRPMVRPARFAPAPAASA
DTTQAARAAVDIDPKSLEVGTRLAQLGAYESAEVARSEWTRISAKFGDFFDDKARVVQRAESGGRIFYRL
RAHGFEDLSDARRFCSALVAGNADCIPVTMR
>gi|99080746|ref|YP_612900.1| Beta-N-acetylhexosaminidase [Ruegeria sp. TM1040]
MRFGATILDAEGLRLTADEKALFREAAPFGFILFARNIESGDQLRALCDEFREAAGHDCLITIDQEGGRV
QRLRAPLAREFRPALDHVEAASDPVRAMYLRARLIAAELRDYGIDSNCAPLADVATAETHPFLRNRCYGS
NVESVAAIARACAEGHLDGGVVPVMKHIPGHGRSTMDSHHDLPHVTAPADLLRAEDFATFAKLRDLPMAM
TAHLVYDAFDPRPATLSPVMMEIIRNELGYDGLVMTDDISMKALWQDAAQDEARTAGGPYPDDEVTWSAR
LARQSLDAGCDVALFCNSSLAARAEVVASAGQMTKAAQRRAEAALACRKPPVVLDTEAVEAELSALMGGQ
VYG
>gi|99080747|ref|YP_612901.1| condensin subunit ScpA [Ruegeria sp. TM1040]
MADENTLFPKETQTVEERLEAESLIVDVQGFEGPLDLLLTLSRTQKVDLRQISVYELARQYLTFVERAKE
LRIELAADYLVMAAWLAFLKSRLLLPPDPEEDGPTGEELAAHLAFQLERLQAMRDAAARLMGRDRLGRDF
FARGQAEDVQRIKTVTYTANLLDLMQGYARIRTKDEFRPFVMDRESVFTMEEALERMRGLLGFTGSWTDM
LSYLPDGWHSDPVKRRSATAATFAASLQLVKEGKMEIRQTDSFAPIQLRNRPEDS
>gi|99080748|ref|YP_612902.1| condensin subunit ScpB [Ruegeria sp. TM1040]
MDDHTLSDTASPERSDSDSLFDAPPMAEQERMVEAVLFASAEPVTVRDLIARMPHGCRPSEALEHLRKRY
EGRGVRVVQVGEAWAMRTAPDLGYLMQKETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGT
IDQLLEMEWIRLGRRKMTPGRPVTFVVTPVFLDHFGLESARDLPGLKELRAAGLLENRPPPGAFPIGQGD
SEDERRDEEQAELFED
>gi|99080749|ref|YP_612903.1| hypothetical protein TM1040_0908 [Ruegeria sp. TM1040]
MGFERIANMVLRRLIGRAVNAGVSAGIKAVAKRSPAKGGGRHTTGAPVGHRPGAPVKAEPDRNPDPQTEI
LTEAQVRAAADAKAERARIREIRQARRARRAGRDPS
>gi|99080750|ref|YP_612904.1| major facilitator transporter [Ruegeria sp. TM1040]
MPSSAPPLWISIATLMCAIAIVGTNALLLSPLVQTVGADLAASPAQVLWASSGYGLGVAAAALLIAPIGD
RIGAGRLLRMALAVLTLGFVASALAPSLAALIAAQVLCGLAGGAALPSIYTMAAVIAPKGREARVVGAVL
TGWTLSLVLGVSLAAWSAELVGWRAVYGALAALCALIWTLSAPLARLDEPGGAASSPLSALRVPGMARGI
FASVGLMLSFYVTYSYTGAHATVSLGLSTGQAGLLPLIYGLGFGGAVLLDPILDRIGMARATTPVFLALS
LVYLAMGVLGASYMLFLALAALWGIFQHFGLNLLVARLTVLDVRQRGAIMGLYSTTTYLSVFAAPFVGGI
GFQALGIMGCVLISAALTTLAAVEALSLRRSSLPFTTDPAQPGAPDAPA
>gi|99080751|ref|YP_612905.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MKGHGMEKTETIRSSARASRGIDALDRRILGALSRDATQSYATISEQVGLSAPAVHERVKRLRASGAIKA
TVAQIDGAQVGKPILAFIHVDTIGWGKTREIMALEEFPEVEEIHSTTGNTCLIMKVRVASPHALEGLLFK
IYDIEGVRGTSTYLTLSTVLERSAQADVTADLESVSYPR
>gi|99080752|ref|YP_612906.1| 2'-deoxycytidine 5'-triphosphate deaminase [Ruegeria sp. TM1040]
MTGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAERLEEFEMHRI
DLSEGAVLEKGCVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITDGGEEFDRIRAGYTGPLYAEI
CPRSFSVLARPGMRLNQIRFRDGQSVLDDAALADLHAKTPLVDGEAVIEDGLGFSVDLRLPGTDLVGYRA
KPHTGVIDLDRISAYDPRDYWEEVRSDKGRIILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVH
YAGFFDPGFGHAAAGGAGSRGVLEVRCHEAPFVLEHGQVVGRLVYERMAELPEQLYGAGIASNYQGQGLK
LSKHFRSPS
>gi|99080753|ref|YP_612907.1| MerR family transcriptional regulator [Ruegeria sp. TM1040]
MRKTDAPQPIKGRPMSKSPDAFRTISEVAEWLDVPAHVLRFWESKFTQVKPVKRAGGRRYYRPTDMLLLG
GIQHLLHEEGLSIKEAQALLREEGIQHVQSLSKPLDGDQEDESAIEAKPASKWVEPSEVEKPKAPLVDRD
PPGAEEQSERKAAPPPPPPYPATPPAPTAPVTPAAATPPVAPGDSMAPPQGQTPAAASANASSAATSAPA
ENVASSGPAESPASTETPSQPTTPPAASPSLGAEAGAGQDADAAPLGTPPSVPPAAPSPAPADAGPATPP
AQTPPAAPASSAAPSEAAAASLHQTPSEFAPTSDTAPAVRSPSTPEGAAEDSAPQEGDHARAHVGGAQTP
QTSAGQMAMPMDLPNAAAPQRDMASQAQAVRAATTPSSATVAPSSASNSDQQDFFAAAADAQNAGQAPAS
DSAAVASDPPAPNPTQPAPAQPDPLAQQESQMSAPPVGTPPAEDLVAEAPVADAPADDLAGDPVADQAET
VHGSATDAESTEAVSKGSTAPVADARPANLTSDQISTEVSFTGEAPQQMAAQASAPDALFAGTTQEPDTV
QASDSVTETPEALQPIEGSAGVDETAIQSLASDDPSSEPALDAPAFDSPGSQHPPADEPAPVQPVSDEPV
SSDLAAIEETNADPAAQMASALAEATAPVAETTESAPSDVDITGADDSDVSAVEEPASEMPHAEVEASDS
HTETSDQDPAPALDVTDAMTDTAAEAAPEADPQSAPDAGPFEDNAETAEERDAAAPVTDEAEDAAALDQF
PETERTPLAADSTPTAESPRPRVIEVSDTPEGSFAAGPLQRLSRLGTLTAAQQGALREIATALREIASRH
>gi|99080754|ref|YP_612908.1| integration host factor subunit alpha [Ruegeria sp. TM1040]
MTEKTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPKT
GEEVPIQPRRVLTFRPSHLMKDRVADGNKS
>gi|99080755|ref|YP_612909.1| 3-oxoacyl-[acyl-carrier-protein] synthase III [Ruegeria sp. TM1040]
MTRRAVVIGAGHYLPDRIVENAEFEATLDTSDEWIRSRSGIERRHFAAEGETTSHMATRAAEAALKSAGR
SADDVDAIVLATSTADLTFPSAATMVQSQLGMTKGFAFDVQAVCAGFVYALSNANALIASGQADRVLVIG
AETFSRIMDWTDRSTCVLFGDGAGALLLEAQEGEGTSKDRGILATDLNSDGRYKDLLYVDGGVSTQSTGY
LRMQGNQVFRHAVEKLASTAHTALERAGASTDEVDWIVPHQANIRIIQGTAKKMGLPMDKVVVTVQDHGN
TSAASIPLALSVGVERGQIKPGDLIVTEAIGGGLAWGAVVLRW
>gi|99080756|ref|YP_612910.1| putative glycerol-3-phosphate acyltransferase PlsX [Ruegeria sp. TM1040]
MTGNTAPSQADARRTVISVDAMGGDAGPAVVVAGIAKSASKNPDIGFLLHGPAEELEPLVARRKTLKGRV
EIRDARDVVTMEDKPSQVMRNGKGTSMWSALESVRSGEADGVVSCGNTGALMALSMLRLRKLPGVNRPAI
AILWPSRNPQGFNVMLDVGADVRADAEDLLQYALMGTSYIRNSMDLPCPRVGLLNVGTEEHKGRAELKEA
YALISQNAEKANFEFVGFVEGSDIPGDIADVIVTDGFTGNVAIKTGEGTASLLRSAIREAFEYSILSRLA
ALLAYTSLSRLAKRIDPRRVNGGVFLGLNGTVVKSHGGADATGVSAAVKLAFLLAEQGFAEKLAARVASA
VELAQDDATSADADAPGDSETGSTN
>gi|99080757|ref|YP_612911.1| 50S ribosomal protein L32 [Ruegeria sp. TM1040]
MAVQQNKVSKSRRNNRRAHDALVAANPNECSNCGELRRPHHVCPSCGHYDDKEIVAQADEIDLDEDAA
>gi|99080758|ref|YP_612912.1| hypothetical protein TM1040_0917 [Ruegeria sp. TM1040]
MSSTPSETAALRVADLPQNRPTRFTLTPEAKALVGIASALGVDALRKLRFEGEIKARGKRDWVLKGKLGF
TVTQPCVVTLDPVTTRIDTDVERLFLAEIAIPDEAEVEMSDDDNIDELGEFISPYDVMLESVALHLPQYP
RKEGAELGQHIHAEPGTAPMTDEDTRPFAGLADLLKPGDKDS
>gi|99080759|ref|YP_612913.1| SmpA/OmlA family lipoprotein [Ruegeria sp. TM1040]
MIASPKTVKSAMRSALLVGVLVAVTACTAQYRKHGWVPGPDLLNEVVVGVDTRDSVSETIGEPTIDSLVD
DSGYYYVSSRIKRFGPKEPEVVSRDLVAITFDGRGVVDSVQRYTLADGRAVPLERRVTDSNLEDKTFLRQ
LIGNLGNFNPSSFLQ
>gi|99080760|ref|YP_612914.1| ornithine-acyl[acyl carrier protein] N-acyltransferase [Ruegeria sp. TM1040]
MAIPSRSQSSDPAPRAGDLLSKGRYCARLAANDGDIAAAQALRTLCFGTLDVDRDHFDDSCAHVLVEERA
SGTLVCCFRMLVLAGGGEVARTYSAQYYDLSALADFDGRMVEMGRFCIHPDWSDPDILRVAWGAMTSFVD
REEIQMLFGCSSFAGTETAVYLDAFAMLKHRHLAPKRWLPRVKAPDVFRFAARLRRKPDAKKAMLRMPPL
LRTYLMMGGWVSDHAVVDRHMNTLHVFTGLEIGAIPPARKRLLRAVAG
>gi|99080761|ref|YP_612915.1| ABC transporter related [Ruegeria sp. TM1040]
MSGISLTFGGDPVFSDLDLVVQPGDRVALVGRNGSGKSTLMKVMAGLVEADAGSIVIPPGNSAGYMEQDP
KMEGFATLGDFAASALEPGELYKVERAGEGLKFDPARPVETASGGERRRAALAKLMAEAPELMLLDEPTN
HLDIEAISWLEGELASTRAAFVLISHDRAFLRALTRATLWVDRGQVRRQDKGFEHFEAWRDKVWEDEDMQ
RHKLNRLIKSESRWAVEGISARRKRNMGRVRALQDLKSERASQIKRQGAAAMELEAGPKSGRKVIEAEGI
TKRFGDKQILNHFSLTVQRGERVAFVGPNGVGKTTLLKMLLGQETPDEGTVKLGTNLEVAVFDQTRDQLD
GDSSLWENLTADPLMGISGKADQVMVRGQPKHVVGYLKEFLFDERQARAPVRSLSGGEKARLLLAKLMAR
PSNMLVLDEPTNDLDVETLDLLQELLDAYDGTVLLVSHDRDFLDRVATTSVAMEGQGQATVYAGGWSDYL
AQRSPKAAPEKVEKSKPAKSKPKPEAQAPKEALSFKEKHRLEALPDEIDRLEKEIAKLEELMADPELFTR
EPVKFKKATEALVERQEKLAAAEEEWLTLEEKAAQA
>gi|99080762|ref|YP_612916.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MKLATTRAVITGGASGLGEATARHFRNAGAQVTILDRDGDRGAKIAETIGAHFVETDVTSEESVAAAMAY
AVDKMGGLSAAVNCAGIAHAIKTVGRDGPHPLGAFQKTVDINLVGSFNVARLAAAEISKSTPEADGARGV
IINTASIAAFDGQKGQAAYAASKGGIVGMTLPMARDLASSGIRVMAIAPGIFMTPMLAGLPEEAQAQLAA
DVPNPARLGQPEEYARLAGFIVEMGYLNGEVIRLDGALRMR
>gi|99080763|ref|YP_612917.1| hypothetical protein TM1040_0922 [Ruegeria sp. TM1040]
MFDLGSTPAMPRPIQRSASLRTLAQSPEFSRALNLVGQTPLHLDRLQDMLVLRRKFWGVEVAMVNRAELP
KPLRLLEILQEEGLRRTPVLLSPEHPVPELGRLGALPLMTPASVGLLDILADRTAQRDRLAQKWRNRLSH
AEAQALRVTRQNMPIAPDHWILRADAAQQQKRRYRSWPAALTLAYAQANRGSAKLFEAHEGRETVAGILV
LTHGEGATYHIAHSTERGRRLSAHNLLMWNAMDWLAAKGIRRLDLGVINTEDASGLARFKLGTGARLSQL
GGTWLYWPPLGRRLAPLAALDRRLMGG
>gi|99080764|ref|YP_612918.1| tyrosyl-tRNA synthetase [Ruegeria sp. TM1040]
MTYHPKSDFIAIMMERGFLADCTDYQGLDEALVSGTQTAYIGYDATAQSLHVGHLLNIMMLRWLQKTGHR
PITLMGGGTTKVGDPSFRSDERPLLGPEQIDANIAGMQKVFAKYLDYSDAKNGAMMLNNAEWLDGLNYLE
FLRDIGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDFLELNRRYGCVLQMGGSDQWGNIVNG
IDLTRRVLENEIYGLTSPLLTTSDGRKMGKSQGGAIWLNDEMLSPYEFWQFWRNTTDADVGRFLKLYTEL
PVEECDRLGALQGSEINEGKIILANEVTTLLHGAEAARAAEATAREVFEKGGVGDDLPTLSLSPAELGDG
MSIVQLIVKSGLAKSGKEAKRLISENGAKLDDAPLTDAGLMIDAAALASPIKLSAGKKRHALVQLEG
>gi|99080765|ref|YP_612919.1| anhydro-N-acetylmuramic acid kinase [Ruegeria sp. TM1040]
MGRAISKSGPVRALGAMSGTSLDGVDVAVLETDGRDILGFGETGYRAYSDAEREVLRAALGQWTGDAVAA
AARVVEAAHIEVMTDHADVDLIGFHGQTVAHAPRLQGTLQVGDGGVLAEALGRPVVWDFRSDDVSMGGEG
APLAPFFHHACARYIGATEPLCFLNLGGVGNVTYVDPRKARPEDEGALLAFDTGPANAPINDFLQSRLGL
AMDEGGRIASGGAVENGALELFLAEPYFARMPPKSLDRNDFPEMIGLVTELSDADATATLTAMCAAAVAQ
GMEHCPKAPSKVLVTGGGRHNPVLMEMLRVSLDCPVEPVETVGLDGDMLEAQAFAYLAVRVARGLPTSAP
STTGVRACVGGGTVTVPEGWTARKT
>gi|99080766|ref|YP_612920.1| hypothetical protein TM1040_0925 [Ruegeria sp. TM1040]
MMQDMNAQEIIETLQLERHPEGGWYRQTWVEDTVDAASGGNAGRSAPRRPSGTCIYFLLGAGEQSHWHRV
DATEIWLYHAGAPLVLSLAATDQGPATDHLLTPNLREGRPQLIVPKDHWQAARSTGDWTLVSCTVSPGFD
FSGFTLATEGFDIPRA
>gi|99080767|ref|YP_612921.1| hypothetical protein TM1040_0926 [Ruegeria sp. TM1040]
MTLDIPFDNTYAQLAPEFYTRQAPTPVKAPRLLAFNDALATLLGIARGTDAELAQVFGGNELPEGADPLA
QLYAGHQFGTYNPQLGDGRAVLLGEVVGTDGLRRDIQLKGSGPTPYSRRGDGRAWLGPVLREYVVSEAMH
ALGIPTTRALAAVETGETVWREGGLPGAVLTRVASSHLRVGTFQIFAARGNTEALRSLTEYAIARHYPEA
KGALGLLRAVRDAQVELVSAWMSVGFIHGVMNTDNSSIAGETIDYGPCAFMDVYHPNRVFSSIDRTGRYA
YGNQPQIAVWNLAQLATALIQLEDDPESVLEEATEIVHAMPELLEDAWLRRFRAKIGLREVAEGDLELVS
DLLGIMAQGQADFTNTFRGLLDGTARDQFLEPEAFDVWESRWKDRLSREADPEALMARSNPVLIPRNHRI
EQMIAAAVGGDYASFERLMDALSHPFEAREDYADLRRPPAEDEVVQATFCGT
>gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
MTEFSSMDLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLVAQMLEYGRK
PAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQIHRLSKGTDILVATPGRLLDIL
DRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEERQTMLFSATMPKQMNEIANAYLKSPVRIEV
TPPGKPAAKVTQSVHFIAKAEKLSLLKELLSAHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKS
QGQRERALKAFKSGEITVLVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCA
PDEIGDLKAIQKTMGITIPVASGRAWEELPDPAAKPARGGGRGRPGGGGGGRGKGGGKPGGGRRRFGGGK
SAAPSGGAGESRGAAGAGGRQRRKS
>gi|99080769|ref|YP_612923.1| FUR family manganese uptake regulator [Ruegeria sp. TM1040]
MTDTIISRCEAHGLRMTGPRRTIARVLEESDDHPDVEELHARANAQDSGISLATVYRTVKLFEESGILER
LEFGDGRARYEDADRDHHDHLIDLNTGEVIEFCDPDIEELQERIAKKLGYELRGHKLELYGVPIKKGS
>gi|99080770|ref|YP_612924.1| hypothetical protein TM1040_0929 [Ruegeria sp. TM1040]
MDNVKGILLLLVAMVGFTVEDLFIKQLSGSLSVGQILVFIGLGAGLLFYVALRLQKQRLWTREAWQSMPV
LRALAEGGAAMSFATALALVDISVVAAVFQATPLAITMGAALFLGEQVGWRRWSAIFVGFMGVLIIIRPG
LDGFEPNALLVLISVFFVAARDLMTRRMPASIPSSVVSVQAYLAVVVAGGVMLMFTPQTLVAPTSFEWAM
LAGGTLFGVIAYYGIVTATRIADAAVITPFRYSRLVFSMIGGAIVFSERPDGMTLLGSGLIIATGLYTFV
RERRLARQAARLAAQPA
>gi|99080771|ref|YP_612925.1| major facilitator transporter [Ruegeria sp. TM1040]
MAAPLRFHEFLLRNAPYLSAGVLLTFLSSFGQTFFISVFAGPIQAEFGLSHAGWGAIYMVGTTASALVMV
AAGGLSDVLRVRQLGAFVLCGLAAACVLMALNRNYWVLPLSVFALRFFGQGMSTHLAVVAMARWFVATRG
RALSIAALGVSFGQALLPLIFVALMVRFDWRMLWLLSAAICLLGAPLLLHLLSQERTPRATSQDVSSTGM
DNRHWSRGEVLRTPLFWLMVPSILGPAAFSTAFFFHQLHFATTKGWSLLELVAYFPFFTVMSVLAMLVAG
WALDRWGAARLMPLYQLPMVAAFAIFATTASGIGMAAGFLAMALSVGAHAVLPSSFWAEAYGTRYIGAIK
SLVMAVMVFGTAIGPGLTGALIDLGLDFDAQGYGIAVYFLLTTLCIWVGVRGARQRLTPRAA
>gi|99080772|ref|YP_612926.1| phosphopyruvate hydratase [Ruegeria sp. TM1040]
MSTIIDIHAREILDSRGNPTVEVDVVLEDGTMGRAAVPSGASTGAYEAVEKRDGDKSRYMGKGVLEAVAA
VNGEIADELVGFDATEQVSIDRAMIELDGTENKGRLGANAILGVSMAVAKAAADFTTQPLYRYVGGAAAR
ILPVPMMNIINGGEHADNPIDIQEFMIMPVAAENIRDAVRMGSEVFHTLKKELSAAGLSTGIGDEGGFAP
NIASSREALDFILKSIEKAGYKPGEEIYLALDCAATEYYKDGKYVLSGEGKTLTSEENAAYLAALVNDYP
IISIEDGMSEDDWDGWKALTDQIGDKVQLVGDDLFVTNPVRLAEGIERGCANSMLVKVNQIGSLTETLQA
VDMAHRARYTNVMSHRSGETEDATIADLAVATNCGQIKTGSLARSDRLAKYNQLIRIEETLGEIAEYAGR
SILKG
>gi|99080773|ref|YP_612927.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MVANPALPEGISDLPAGTLASVVTYLEMKTPPPIKGLETPPGLRLLRHDAPDVEWYCRLYRLVGEDYLWF
SRLMWDYATLAAHLASDRVEVWSLQKQGVDLGLLELEWMQDGDCELSFFGLSKELIGAGVGRWLMEHATA
RAFSREISRFFVHTCTLDSPQALGFYMRSGFVPYGRAVEIAEDPRLTGLIPKTAAAHVPLIQR
>gi|99080774|ref|YP_612928.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MSASLHLARPEDLEKLLPLVQGFHSEEGIQSDDAQRRGALLPLLEGIPYGAIYLIGPTRAPIGYIIVTFT
WSVEFGGLDGMIDEFFIRPAVRGRGIATEVLFALPRTLAEAGVRALHLEVDRDNDAALRLYKRARFTARD
RYLLMSRTL
>gi|99080775|ref|YP_612929.1| inosine/uridine-preferring nucleoside hydrolase [Ruegeria sp. TM1040]
MPARKIIIDTDPGQDDAVAILLALASPENIDLLGITAVAGNVPLELTQKNARIVCEVAKRQDVKVFAGRA
APLERPLVTAEHVHGGTGLDGPELFDPEMPLQDQNGVDFIIETLRREPAGTVTLCPLGPLTNIAAAFRAA
PDVVERVQEIVLMGGAYFEVGNITPAAEFNIYVDPEAAHEVLSSGIKITMMPLDVTHKALTTRARVEAFR
ALQSPVGAFTADMLDFFERFDVEKYGSEGGPLHDPCVIAYLIDPALFSGRHINVEIETASALTLGMTVAD
WWGVTDRPANALFIGDIDADGFFSLLTNRLARL
>gi|99080776|ref|YP_612930.1| hypothetical protein TM1040_0935 [Ruegeria sp. TM1040]
MSEKNQQSADLMARQYFLHLGAHRTGSSSFQLCLHENRAALANAGYGVAFPARDGIRAGQLALRLPQPRH
DAEAETRMAETARQHLTQDIAPAPDQKVLLSEENILGSMSHFQQALFYPASAKRLRALRQAMEGPAAAVL
LVVRDYGPFFRSCIRKRMEETIVTDFEGAVSAYLAMDRGWLEVLREVRDILEPAKLIVARHEDRPKRVDL
LRELAPDLAQVALMQPSTSLNISATDRALSALQARYATGEKLSRKAWRATLAEWRDDATPMGLTEFTPRE
LRAFSMRYERDLSDIAKEPGLTLI
>gi|99080777|ref|YP_612931.1| nucleoside triphosphate pyrophosphohydrolase [Ruegeria sp. TM1040]
MSDDSLIHDETAGIERLLEIMRRLRDPKGGCPWDIEQDFASIAPYTIEEAYEVADAIEREKWDELKGELG
DLLFQSVFHAQMAAEAGHFTFQDVVTTMSNKMVSRHPHVFGDESREKSAEQQTQDWETIKAAERAAKAET
GALDGVAVGLPALLRAYKLQKRAARVGFDWPSAQNVLAKIAEESAELVEARDTLTQDEVEEEFGDLLFVM
ANLGRHLGVEPEAALRRTNAKFTRRFKAVEAKLAERGKRAEDSNLEEMDALWNAVKAEEKARKGQDSKSE
>gi|99080778|ref|YP_612932.1| peptidase M20D, amidohydrolase [Ruegeria sp. TM1040]
MPVVNRIADFAEDMKTWRRHLHQIPELGLDTVKTAAYVTEILETFGVDEIHGGIAQNGIVAIINGQGEGP
TLGLRADMDALPITEVRDLDYKSQTPGKMHACGHDGHTTMLLGAAKYLAETRNFKGRVALLFQPAEEIIG
GAKIMVEEGVMERFDIKEVYALHNAPGLPVGHFMTTPGALMAAVDEFTINIKGLGGHGAMPHETRDPVMA
ACGMAQAIQTIVSRNHQATEDLVISVTQIHTGTVDNVIPETAYVNGTIRTFNPEVQKMVMARFDEIVKGC
AVAYGVEAELDYEVGYPATINDAEKAAFATDIARDISGEANVQGDAGREMGAEDFSYMLEARPGAYLFLG
QGDTAGLHHPEYDFNDEISPIGASFFARLVEKAQPAG
>gi|99080779|ref|YP_612933.1| agmatinase [Ruegeria sp. TM1040]
MTSPPALARTSAEPENREQSKMALEDAKTQVDQAFTREDLKGLSFENTFGGATSFLRRRYTKDLTHADIA
VTGIPFDQAVTNRPGTRLGPRAVREASALQSPDAPYGWDICPASELAIVDYGDLAFDYANVPAFPDTLTD
HIRGILATDTASVAIGGDHYVSFPILKAYAEKYGPVSLLHFDAHSDTWADDDFSRVDHGTMFYKAVKSGI
IDPATSVQVGIRTTNEDNLGVPTIDAPTVHEIGPVETARRIREVLGDRPVYLTFDIDCLDPAYAPGTGTP
VWGGLTSAQAEAILKGLRGINILGGDVVEVSPPFDTTGATAIAGAHVAMSIICLLGWRMTGR
>gi|99080780|ref|YP_612934.1| agmatinase [Ruegeria sp. TM1040]
MSEFNQPISGNDLARFSGPGTFMRLPQATSLEGLDVAVLGVPMDIGTSWRSGTRFGPKQIRAESAMIRPY
NMATGAAPFDALNIADIGDLAINTFNLAESLRIIEDSYDAILGSGVLPFAMGGDHSITLPILRAMARRYG
PVAVIHVDAHADVNDEMFGERETHGTVFRRAYEEGLLEADKVYQIGLRGTGYGPDDFKEPQSWGFQHFVA
SELWNRSLHNMGAEIRRDIGGRPVYISYDIDSLDPAFAPGTGTPEIGGLTTMQALELIRAFKGLNVVGCD
LVEVSPPYDPSGNTALVAANLIYEMLCILPGRDRA
>gi|99080781|ref|YP_612935.1| hypothetical protein TM1040_0940 [Ruegeria sp. TM1040]
MKHASGLVRFAARAAHTAAVAVSLLIVATGGGAHADVVGPGGKTIDCYCTDKQGARIELGETICLQVDGR
LFMAQCQMSLNVPMWREVQEGCLSASNHLSPLPAVMPRL
>gi|99080782|ref|YP_612936.1| peptide chain release factor 1 [Ruegeria sp. TM1040]
MIPEDRLQQILQRYQYLEAAMADGAGGDIAKLAKEYSDLRPVVEQISAYQQLLSDLAEAEEMLADPDMKA
LAEEEIPTLKAALPQAEHALQLALLPKDEADSRAAILEIRPGTGGDEAALFAADLYRMYSRYAETQGWKV
DVIEEQASELGGLKELVARINGDGVFARLKYESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDIKI
DANDLRIDTMRASGAGGQHVNTTDSAVRITHLPTGLVVTSSEKSQHRNREIAMQVLKTRLYDLERQRIDT
ERSADRASQVGSGDRSERIRTYNFPQGRMSDHRINLTLYKLDQIMGGDLDEIIDALISEHQAKLLAEMGQ
>gi|99080783|ref|YP_612937.1| HemK family modification methylase [Ruegeria sp. TM1040]
MSTTAAQAMVAATARLRAAGVEDPARDARVLLAHAARIEAARVTLIAPEELSHEVAERYDQLISLRAIRV
PVSHLVGERDFYGRRFKVSGDVLDPRPETETLIEAALAEPFERVLDLGVGSGCILVTLLAEQQRARGLGV
DLSEAACLQASANAVLHRVEARADIRQSNWFSAVEGQFDLIVSNPPYIALEEMDGLSAEVRDHEPQMALT
DGADGLSAYRQICAGLAPHLAANGRVMVEIGPTQGPAVAQMMRETGLRDVSVLPDLDGRDRVVFGRNA
>gi|99080784|ref|YP_612938.1| hypothetical protein TM1040_0943 [Ruegeria sp. TM1040]
MRRKRGTRSSTIRTKADVRHMRSSKSRSRSKSNRNRPNGANVVNRVFDSSGPEGKVRGTPQQIIDKYNQL
ARDAQLGNDRVATENFQQHAEHYLRMLNEAQREIEAKREEQERQNRERQAERDRERAERLERQEREAAEA
AAGDGPQPEIADPREAPVQEAQDDSGLVETPEGKTSEGEATPAKKAPARKPRSRKPAAPKEGENGEAKPE
AEAKPKRSRAKPKPKPNPDEPQEAAE
>gi|99080785|ref|YP_612939.1| dimethyladenosine transferase [Ruegeria sp. TM1040]
MSAIDNLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGGLTRGLLSEGA
RKILAIEKDQRCLPALEDIAAAYPGRLEVINGDALEIDPLAHLTPPIRVAANLPYNVGTELLVRWLTPKE
WPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQWRAEARIALSLPPGAFTPPPKVSSAVVHLTALP
EPRYPADAAILSRVVAAAFNQRRKMLRASLKGVSPQIEDHLNAAGIPPTERAEQVSVEDFCALARSLEKG
>gi|99080786|ref|YP_612940.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Ruegeria sp. TM1040]
MTGAPQVIALSCGEPAGIGPEIAVAAWDQLRADCPFVWIGDPRHLPSSHPWQPVSAPAEALQVSADALPV
WPLEFAGNTTKGEADPQNASGVIQSIKTGVELVTSGKAAALCTAPIHKKALIDGAGFAYPGHTEFLAALG
GVDHVVMMLASAALRVVPATIHIPLSAVPEVLTPDHLRRVITLTDRGLRDQFGLTAPRIAVTGLNPHAGE
GGAMGQEEGDWIEALIREMQTEGYRLTGPHPADTLFHAAARARYDAAIAMYHDQALIPIKTLDFDKGVNV
TLGLPFIRTSPDHGTAFDIAGKGLANPSSLIEALRLAQTMAKTRQP
>gi|99080787|ref|YP_612941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
MQQNLTFRQISLALINWTRRASYAAGLALAIAAAAPADLQAQGLFSPAITVNEDVITTYELEQRALFLSV
LGSVQGDPFETARDDLIEDRLKRQVMKDVGLTLSEEEVTEGMRELAQRANLTLEEFLASLNQAGVAPETV
RDFTTAGLGWREYVRGRFLSQARPSEAEIDRAMGTAGSGSVQVLLSEIILPLTQENAAQVQDLAIQISEL
TRAEAFAASAAQFSAADSRTDGGRLPWMSLSRLPPQLQEVVLGLEPGEITQPLPMQGAIAIFRMRGLREV
DGRSATYAAIDYATYRIPGGRSPEALARATEIRDEIDTCDDLYGINKGQDPDRLFRGSEAPGAIPQDIAL
ELSRFDENESSATLTRDNGQTLLFVMLCGRTSEVVASQENARVAVANALVQQRLNELAEAHVEQLKANAR
IDFQ
>gi|99080788|ref|YP_612942.1| organic solvent tolerance protein [Ruegeria sp. TM1040]
MPKTVELKKRRRGALLRTVVPLWLALAAAPALAQNATSAQETPAPAMLVADRVFVSPDRKLVAEGNVEAF
QGDIRLQARRISYDRQTGILQMEGPIRIDQSGSITVLANAAELDSELRNGILRGARMVFDQQVQLAALQM
TRVEGRYSQLYKTAVTSCHVCEDGSPPLWQIRAERITHDQAERQLYLEGAQLMVKDVPVFYFPALRLPDP
TLERADGFLVPSLSSSSTLGVGVKIPYFKTIGPHRDLTITPYLSEKTRTLDLRYRQAFRNGQIEITGAFS
RDDIQPDDGRGYLSLRGAFDIPRDFKLSFDLNTVSDDGYYADYDISDTDRIRSEISLIRVRRDQLIEGKI
SNYKTLRDAENQDFIPSTIVTGTFEQRLFPKAVGGELRLRLNASQFRRESSLDATLTDANGRDMSRVSAD
ATWLRSWILPWGIESVWTAGIGIDSFALSDDAAFDNDATRVTPKAALTLRRPMTRQTASGAVQVLEPIVQ
LGWTHVNGDDTPNEASNISEFDQGNLMALSRFPESDVREDGETFVYGVNFAHFDTSGWFATGTIAQIHRD
QAQSGFTSSSGLDGRNSNVLVAGQLGLRNDLTLTARTLFDEEWSVTKAEFRGDLERDRVSLAGSYLWLQA
DASENRTEETSELWFDGTYDLNQTWRAGANMRYDITDGRATRAGLGLTYSNECVTLDLSLSRRYTSTTSV
EPSTDFGFTLSLNGFSVKSGNTTSRRSCSKT
>gi|99080789|ref|YP_612943.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
MILDLYYARRFLQWFMVIAAVLMSLVMLIDLSEQFRRFDAQDLRFGQLLELTLLNAPAAFSEFLPLIMIL
TTIVLFVGMARSSELVVTRAIGRSGIRALVPPVVVALVLGGLAVSTLNPIVAATTNRFETLSESYRQTGG
PAAVSLSGEGLWLRQGGQNGQSVIHAANYRGDAENLYLYDVSILTYAPDGGPTRRTVAAEARLEGDDWVL
RDAKVWQLILGVNPERSAKRYDELRLPTTLTNERIRDTLGYAEGISIYDLPQTIQSLSEAGFSTTRFQVW
LQVELARPLFLVAMVLVGAAFTMRHTRLGGTGVAVLTSVLLGFALYFVHNFARILGENGQIPILLAAWAP
PVASILLTMGLLLHAEDG
>gi|99080790|ref|YP_612944.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNLVRMVLPLAAF
AATVWVTNRLNSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLFLLPASLAQMQFREAELSRSV
SAKLLNAGSFLHPSEGITFFIGSIEPDGTLQNVFLTDQRDPSVEITYTSDRAYLVREDDEAHLILVDGLA
QRKEAHNDRLSTTAFSDFSYPLGDLSPARAAGARPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRF
ARAAVTFAVVMIGVSTLLMGGFSRFGIWKQVLGAFVLLILIEGMRGVVADPVRENAAMWPLIYLPATLGV
MISVLFLHLATRPQALMRLTRRKTQETDA
>gi|99080791|ref|YP_612945.1| leucyl aminopeptidase [Ruegeria sp. TM1040]
MSALTPIRFSAFDPKSLADVEGHLAVVVTPEGTMDQAARSANRLTKGALARLIASEAFAKAKTGQVITLA
WPAGLAVEALHVVVLPRRLTPIEARKAGAKLAEAKGRKPLVVKAGNMARAADLALGLALRSYSFDAHKSA
ETEKAGTITIGHNKPEEMEAAFAPLLAVAEGVHMTRDLVSEPANILTTTEFANRLEEMTELGLEVEVLEE
AELEKLGMRTLLCVGQGSASPSKVVVMKWNGADDKEAAPLALVGKGVVFDTGGISLKPAAGMEDMTMDMG
GAGVVAGTMRTLALRKARANVVGLVGLVENMPSSTAIRPGDVVKSMKGDTVEIINTDAEGRLVLCDVLWY
AQERFKPAGVIDLATLTGAIIIGLGHENAGVFSNDDALCGAFLKAADAEGEGAWRLPLGQAYDDQLKSNV
ADMKNVGGRPAGSITAAQFLQRFIKEGTPWIHLDIAGVASVKAATDYAPKGATGWGVMALNRLVQDQFEA
E
>gi|99080792|ref|YP_612946.1| DNA polymerase III subunit chi [Ruegeria sp. TM1040]
MGAAYFYHLTRKPLQETLPVLLDKARGAGWRIAVRGRDPERLAWLDDTLWLAGDASFLPHGIAGGPHDAL
QPILLTTASEAANGADCVMSVDGAEVQPDEVDALERVCILFDGTDPEAVQHARGQWKNLTAAGCLAQYWS
EESGRWEKKAESGG
>gi|99080793|ref|YP_612947.1| hypothetical protein TM1040_0952 [Ruegeria sp. TM1040]
MNSDDIGQLIYLVLLLLVVGSWVFVQNRQSLGKTAQQLMIWALIFLGVIAAYGLWDDIRTTVVPQQAVLS
DDGQIRVPRARDGHYYLTLQVNDQPVQFLVDTGASDMVLNADTAERLGIDPSALSYFGRAMTANGEVRTA
RVTLDTVALGPITDRDVSAWVNEGALAQSLLGMGYLQRFSGFEIRNNELILTR
>gi|99080794|ref|YP_612948.1| multiple antibiotic resistance (MarC)-related proteins [Ruegeria sp. TM1040]
MIDTAFLITSFVTLFVIIDPIGLMPVFLALTQGMTSKQRRAIAIRASITGIGILAVFALFGESVLGFIGI
SMPAFRVAGGILLFLTALDMLFERRTARRQHQGDEIAPEDDPSVFPMAIPLIAGPGSIATVILLTGQHPG
IEGFASVMAIVVAVIALMLGMFSISGALERLLGPVGINVATRLLGMLLAALSVQFVLDGLSAFGFAS
>gi|99080795|ref|YP_612949.1| ABC transporter related [Ruegeria sp. TM1040]
MPFDMRDAMLRIENITYSVEGRPLMEEASASIPTGHKVGVVGRNGTGKSTLFRLIRGELALEGGTITLPS
KARIGGVAQEVPSSEVSLIDTVLAADTERAALMAEADTATDGTRIAEIQTRLVDIDAWSAEARAASILKG
LGFDDQDQLRPCSDFSGGWRMRVALAAVLFAQPDLLLLDEPTNYLDLEGALWLESYIARYPHTVLIVSHD
RGLLNRAVSAILHLEDRKLTLYQGPYDTFAETRAARIAVAQSEAQKQENRRAHLQSFVDRFRAKASKAKQ
AQSRLKMIEKMKPISTPQEAALRAFSFPEPEEMSPPIIQIEGGITGYGDVEILRRLNLRIDQDDRIALLG
KNGQGKSTLSKLLSDRLPLMAGKMVRSSKLRIGYFAQHQVDELYINETPLDHLRRLRPDEPPAKWRARLA
GFGLGAQQAEVEVKRLSGGQKARLSLLLATLDAPHMLILDEPTNHLDIESREALVEALTAYSGAVILVSH
DMHLLSMVADRLWLVSEGTVKPYDGDLDSYREMLLARDKPAAKAATVAASAAEKRTEKPKRASRDQLLAL
RSEVRKSEARVEKLSEMREKLDAKLADPALYESGKQADIEVWQKKHAECIEALERAEAIWMDALEKLELA
ETS
>gi|99080796|ref|YP_612950.1| hypothetical protein TM1040_0955 [Ruegeria sp. TM1040]
MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSGGLFRRLLGGA
IGLKLEDDIMSAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGLADLRPAHLSPYVEPWDVVKR
LMRSYAARKAQGDAGGTTSPDTRPAAVRFHSDRAEVGFRFIGVWDTVGALGIPDDKGVLRLLLGDLLRHE
FSNTTLGANVACARHALAMDERRKDFTPTLWTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWML
REAQAQGLALREIAPGHLRPDAYGRRHTSYLGWFRLRPTRPRAVPEVSAAGAEVFDWTSRTCFDASVLQR
QRMPPPGETTYWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVARGSWQDAAIEATANGVRRGL
SLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGDEIADHEYHRL
GEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS
>gi|99080797|ref|YP_612951.1| Bcr/CflA subfamily drug resistance transporter [Ruegeria sp. TM1040]
MLRPAQTPPMLMTLVFGTALSVLSLNMFLPSLPGIAQEFGVDYGLANLAIAGYLTISAGLQLIMGPMSDL
YGRRRVMLLCCALFVLASVGCALASNIWVFLGFRLLQGAIISGQVIARAVIRDMYPPSEAASKLGYMSMI
MALAPMTGPMIGGALDMAFGWRAGFWLYSGLGLLVLWLTWGDMGETNTKRAATFRAQMRLYPRLFSSRRF
WGYSACVAFSIGGFYSFVTGAPMVAAAWFDLSPAMVGLGIGIITCGFMVGNFVTGQLAQRLRLLTLILIG
RGVACLGPAVGLALFFMGQGSELVFFGSAICVGFGNGLTIANASAGLMSVRPELAGSAAGLSGALSVALG
ALLTAVTGVAVEPETAPFAVLGIMLSASVLALVSALYVLVVDLQDPLEPAHG
>gi|99080798|ref|YP_612952.1| nucleoside diphosphate kinase [Ruegeria sp. TM1040]
MALERTFSIIKPDATRRNLTGAINAKFEEAGLRIVAQKRIHMTKAQAGKFYAVHAERPFYDELCEFMSSA
PVVVQVLEGEGAIAKNREIMGATNPADAAPGTIRAEFAESVGENSVHGSDAPETAAEEIAYFFSGLELVG
>gi|99080799|ref|YP_612953.1| TfoX domain-containing protein [Ruegeria sp. TM1040]
MSTPVSSIKNLGPAYETACTRAGIHSAEELRALGADAAYGKLLQSGSKPHFIGYYVLVMALQGRPWNDCK
GEEKKVLRKRFDALKAQSFDSDRSALDAILNEIGVIERRTD
>gi|99080800|ref|YP_612954.1| mannose-6-phosphate isomerase, type II [Ruegeria sp. TM1040]
MLHPIILAGGVTQTSEWSTGVCHLALETAPGVPSRFEGVLDAMSGDVFADPVVVTTRDNMSLVERQIAAR
PAALIVEPETHKPAAALLSAVLSLRHMPGALVVVAPATANLADTRNLDKALCNAIPAAQRGEIVMFGQRT
TRAYGGFGIMEVVTQPHENAPVAVSRVLASGRKVTLSHLLHGNHQLWGTGLYLARVDVLLAAFKSHASRL
FLPVKNALLRAGTVDRTTLLDRATYRRVKAITFEKAVAEKIENICAIQLDPTWSALEEWDQDAAADSAVA
QWDEDLAQERAGVLNARAAAPFPHSADMMAVYASLSKISAEDALSAHATEYDWGRLESLAMGPGFTLQRM
SIAPGATLDLNAAPGGAEHWIVAQGSVLITIGDHVRLVWEGHSARIPAGRSRRIENPGSGTLVLVQLQVM
PLSATGQPQSAASFSPAGVA
>gi|99080801|ref|YP_612955.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040]
MNSVNGFNINMRILLADDHDMVRDTISAYLASEGGAQITATTDLPRAMKELEDNGPFDLVLLDYNMPGMN
GLDGLQRALKANGGRGVAILSGSAPTRTAQDALDAGAIGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMR
EEASAPEHPLLAQLSPREVEVLSGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKE
AGLF
>gi|99080802|ref|YP_612956.1| oxidoreductase, molybdopterin binding [Ruegeria sp. TM1040]
MRSLLVAMLALIASIGSVSASEGEVVLTLKNADQVHEFTVEDLRSIGEREIVTTTIWSEGEQSFVGVSLD
RLLAETGVEGQTLEAAAVNDYAVEIPTSDAQPGGPIIAYMRNGNLMSLRDKGPLWVIYPYDSDVAFRTEE
VYSRSIWQLNRITVK
>gi|99080803|ref|YP_612957.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MRQKIPIMHRWVISAAAVVLILLAAQAYRLGSDVQSRIEALSSAATDNLQWTLSQAEVDYLKYRSAAMVV
EDRSDLPRLRRQFDIYYSRIATFRESALYSEVRATPEGSETLGRLQQGLQRQAALIDASDDVLLSEKENL
LQLIAVDGNDVRDLALFGVALQAETAGAERVLLHTLFTRLAIVVLALLGTLALTALVILRLFRRGQRLSM
LQAQEAARTEAMVTSSLDAILMADAEGRITAINGAAEEIFGYSEEEAIGMNFDSLILQSPEGAGAGDLDD
FLNENDGRFQMTAQRKTGDVIPVEVSLTVSKSDGNQVLVSYVRDISHRLQAEEELRRARDDALAGEQAKD
RLLTVMSHEMRTPLTGILGSLDVLEGLTPSAEQQRYLQAMRVSGELLLHHVNDVLQLSRLESGAEADAPI
RFDLDELVRGIGESQQANAARNNNDLSVFCSLGAETGVEGHCRYVQQVLLNLIGNALKFTQDGAVSVDVM
RTEGDLVEFSVADTGKGIAAEDLERIFDEFTMVDPNYNRGCEGTGLGLAISRRLARLMGGEITCESEPGE
GSLFSFTIPLPPVALEQGKPVFAADAPTRQQRLLVIEDNDINRLLLETMLNDMGHEVVSVNGGARAIEEI
RTHRFDLIISDISMPDIDGMEVLRRVRAEQLANDTDIVALTAHAARDDHERILAAGFAEVLTKPIDRAAL
AEMVLRRSAADAAAPIPAQYPGESDISQFVAAVGPEKARHFLAEFRDDVRALREALTQSVELTDQHRKEA
HRLAGSAAVLGLATLRSSMLEIEQANTNALPELAPLQDAWGNAEKVLAIHVAS
>gi|99080804|ref|YP_612958.1| anti-sigma-factor antagonist [Ruegeria sp. TM1040]
MSKSHAVVHSALADEASQHNNTLSWFDITPADQERVRSLAPIADHVGEEIIADFYAHILRFEDAAQQFAD
DTQIERVKRGQKKYFQELINAELDESYAEERKRIGGIHERAGITPTLYVGSYAYYLQRLSQSILENGKED
PHKLFGLVLSMMKIAHYDMALALETYVEAREKTIEIHERQMRELPTPVLELREGLLLVPVVGALDSHRAR
TLTMQLLDGIRDTRSRAVVLDITGAVSIDSSVANHLFQAMTAARLMGAKSILAGISPTVAQELFRIGVDT
KTFTTARNLQQGIELAASALEAHSKHSV
>gi|99080805|ref|YP_612959.1| tRNA-dihydrouridine synthase A [Ruegeria sp. TM1040]
MSTGTLSKADLWRAARLSVAPMMDWTTRECRYLHRLLSRETLLYTEMVTAPALVRGGALHLLDHDPSEHP
VALQLGGSDPKELAEAARLGAEAGYDEINLNCGCPSDRVQSGAFGAVLMQTPELVADCVAAMAEAVSVEV
TVKCRIGVDDQTPDEILPDFLDKIRAAGVKRVTIHARKAWLQGLSPKENRDIPPLDYELVHAMKSAFADM
HISLNGGITSLDEAQAQLARGLDGVMVGRAAYHQPADVLCAADPRIYGTGTASDPLEVVRQMLPYIEQQM
QSGSRLHQITRHMLGLFAGRPGARQWRRHLSEGAHRTGAGPELVEEALSLVLARAA
>gi|99080806|ref|YP_612960.1| hypothetical protein TM1040_0965 [Ruegeria sp. TM1040]
MTATEAYLQKGWLRFAAEESIRDWAAHAQRCAETATADPAHAKWLDCEGTWFIGVDALPNDPDGRLPSGP
PLEGAALDFIRAHFGEIPALHRAQLSVIYPGYPRPRRGESDAAFGYRCKRDGAHVDGIKIYGTARRRRVE
EPHAWVLGLPLNKTSKNAAPLVVWEGSHLIMREAFRLAFEGIALEDWAHVDITDIYTAARREVFETCKRV
EVHANPGEAYLMHRLCLHGVAPWADGASATDGAGRMIAYFRPEMPNWQAHWLSDL
>gi|99080807|ref|YP_612961.1| hypothetical protein TM1040_0966 [Ruegeria sp. TM1040]
MTDDVWKRQEIESPCIKLCVIQPQTRLCTGCARSIDEITRWSKMSPAERAEIMAALPTRTAAPKARRGGR
AARLQSKS
>gi|99080808|ref|YP_612962.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
MIHDAFEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAGRDING
ILLGLPRNMDGSEGPRCQSTRAFARNLSRVTDLPIGFWDERLSTVAAERALLEADTSRKRRAEVIDHVAA
SYILQGALDRMRHIRSS
>gi|99080809|ref|YP_612963.1| cytochrome c-type biogenesis protein CycH [Ruegeria sp. TM1040]
MAFWILTGAVTLTLAVILALVVLRNRNGAGEPAAAYDLRVYRQQLKDLDKDVARGVVSDADADRLRTEIS
RRILSADAQLQAAEAGEDQPNGPSRVMAVVLIAVIVLGTGGLYWQLGAPGYGDYGLRERIALAKTRAETR
PSQSEFEARMPAPPAPEADASYLNLVEQLRSATADRPDDLQGQALLAQHEARLGNFKAAYEAKARYIALL
DTAPDPRDLIDQAELQVMAAGGYVSPESEALLEQALSQVPEDGRARYYYGLMMGQNGRPDRGYRIWAETL
KDGPAGAPWIRAIQAQIPEMAGLAGVAYQPIPPGGESARLNGPSAEQVEAMQDLSPEERQEMIEGMVSGL
ATRLAEEGGSPAEWAQLITALGVLGRMEEARVIYLEAQQQFAGDDGALDILGAAFAPLEATR
>gi|99080810|ref|YP_612964.1| sarcosine oxidase beta subunit family protein [Ruegeria sp. TM1040]
MRSRSYLEARHEALDSLMKRYSAFAVAREGLRYHSGWERAWRSPEPKRHYDVIIVGAGGHGLATAYYLGK
NFGITNVAVIEKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKSRSLYEDLSQDFNYNIMFSPRGVIMLAQ
TEHEVRGYKRTAHANALQGVSTEWIEPARVKELVPIINLEGPRYPVLGGLWQARGGTARHDAVAWGYARA
CSAMGMDIIQKCEVTNVRTENGRVVGVDTTKGAIDCDKLGMVVAGNCSVLSEMAGFRLPVESVALQALVS
EPIKPCMDVVVMANTVHGYMSQSDKGEMVIGGGTDGYNNYTQRGSFHHIEETVRALNETFPMVSRLKMLR
QWGGIVDVTGDRSPLISKTPVQNCFVNAGWGTGGFKAIPGSGWAMAELMATGHSNLAEEFSMMRFKEGKF
IDESVAAGVAH
>gi|99080811|ref|YP_612965.1| sarcosine oxidase, delta subunit, heterotetrameric [Ruegeria sp. TM1040]
MLILDCPYCGVRAEETELHGGGEAHLKRFGPGSTDDEFHDYLFMKENPRGVHLERWRHVNGCGKWFHAAR
CTQTLEVFGTYSAQTTEPPQEIKDKISAKRPGWSWREFKG
>gi|99080812|ref|YP_612966.1| sarcosine oxidase alpha subunit family protein [Ruegeria sp. TM1040]
MSTRLAKQGRLIDRSKQIEFSFNGKTLKGFAGDTLASALLANDQMLVGRSFKYHRPRGLVASGSEEPNAL
VGLGVGDRFEPNQRATTTELFSGLKAQSQNHWPSLEFDVGEINSKLFSRFLTAGFYYKMFIHPRPFWKHV
YEPFIRQSAGLGKAPNKELKDADTYEHFYYFCDVLVIGGGVAGLQAAKTAAATGAKVLVLEEKSYWGGRT
PVDGGTIEGQSAEAWISKTVAELEAMDNVTLRTRTMGAGVYDHGYILGYERLTDHAPGQGGPRHRLWRIR
ATQTVTATGAIERPLSFAGNDVPGVMLAASMRDYVVNWGVTPGQKVVVATNNDDAYRTAITLHEAGVEVV
RVLDTRESGGGDLADKVRALGIRVECGRAIAKVKDGKRVTKVAICAQNGEGGAHEEIEADAVAMSGGWSP
VVHLWSHCGGKLIWDEAQAHFRPDPDRAPTGHDGLPFVVTAGASSGPLTLSGVMADAAEAGARAAEAAGR
PAQKVSPVATSDLAEAPMEAVWMMPAKADIKLRMKTWLDYQNDVKVSDVQLAAREGYESVEHTKRYTTLG
MATDQGKLSNINGLAVLADSLGAEIPQVGTTTFRPPYHPISMGAIGGEARGEIFQPLRKTPMYDWHDSNG
AHWEPVGHWRRPYAYVRSGESVHQAVNREVKNTRENLGLLDASTLGKLIVKGPDAGKFLDMLYTNMMSTL
KIGKCRYGLMCSENGFLVDDGVVARIDEDTWLCHTTTGGADRIHAHMEEWLQTEWWDWKVYVTNATEQLA
QVAVVGPNARKVLEKLNEKAGGGMDLSKEALAFMEWKDGEIGGFKARAYRISFSGELSYEIAVSASEGQA
FWNALIEAGKEFGVMPYGTECLHILRAEKGFIMIGDETDGTVIPQDLGLHWALSKKKEDYLGKRAQQRSH
MADPDRWQLVGLETVDGSVLPDGAYAVGDGNNANGQRNTIGRVTSTYYSANLDRGIAMGLVKHGPKRMGE
VIDFPGLDGKIYKAKIVDPIFYDKEGDKQNV
>gi|99080813|ref|YP_612967.1| sarcosine oxidase, gamma subunit [Ruegeria sp. TM1040]
MSKAVSAMNGASFAGLAKVEETGLGGMITLRGDFASAAFKAAVKTAIGCDVPAVRKIAFGEQGAAAWMSP
DELLLLVDYDTAEAVVAQLSDALAGEHHMAVNVSDARACFAVSGEGAREVIAKVAPVDLDAGQFEAGDFR
RTRFAQVAGAFWRDEADVFHIVCFRSVAVYMFNLLSTAAHPQSKVGVYA
>gi|99080814|ref|YP_612968.1| hypothetical protein TM1040_0973 [Ruegeria sp. TM1040]
MLNFKGRAIAACVSLVVTASMASAETWVCKFSDSTRRGTIPQKVIFDLRSDGSALVMDPYLVHTDQAPKL
ARFVKNTSNKLRVRWRVDDMPFSGGLASDMDFSLVHDKARDKAFITLNLPSFDNRDSGTGSCEIAK
>gi|99080815|ref|YP_612969.1| hypothetical protein TM1040_0974 [Ruegeria sp. TM1040]
MQAAQLKCTLSKVWFAHPFLPSSLVLEADEHFLNVKLRDVQIKNVATSDTSAKVVYRGQNRLRLEWPTAE
YRRTGPVAFPNRNVDRDEIIDYRPTLSLNLKNLKFKLEVQDRGEGLQRGQGDGTCKRLR
>gi|99080816|ref|YP_612970.1| hypothetical protein TM1040_0975 [Ruegeria sp. TM1040]
MMKRMRVTSQIAAAIFGLAFAAKGALAATYDCKVTRADIQHPYLAERVVFTTDARFQKITMTKIDIKDVS
TTVVPGELANRTRKRVRIRFPAHSFVMNGLLPRQPGAYSRLKPSEYLYELSISLSDQRYTMRVVDAIFGL
SYGAGSGRCKVSN
>gi|99080817|ref|YP_612971.1| superoxide dismutase [Ruegeria sp. TM1040]
MAFELPDLPYAHDALASKGMSAETLEYHHDLHHKAYVDNGNKLIAGTEWDGKSLEEIIKGTYNKDAVAQN
GIFNNISQLWNHNQFWEMMGPGESKMPTELEKALVESFGSVEKFKEEFSAAGAGQFGSGWAWLVKDTDGG
LKVTKTENGVNPLCFGQAALLGCDVWEHSYYIDFRNKRPAYLSNFLDNLVNWENVASRM
>gi|99080818|ref|YP_612972.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MLWSCGGIATANLEGQHMILSEGIAGQEAQFIALFEATFAASEGASEGAVIGGLVRALLSKTPSEDIYVF
TAHDTPHDTAHDKDTLIGVAIFSRLVYAEDPRSVFILSPMAVASHRQGQGVGQALLRHALTKLRDAGVDV
AITYGDPAFYGKIGFEPLDPERVAAPLPLSMPIGWIGQSLTETPLVALKGACSCVEALNDPSIW
>gi|99080819|ref|YP_612973.1| hypothetical protein TM1040_0978 [Ruegeria sp. TM1040]
MAVTSVCVYCGSRMGAKPAYEAAARDFGTGLAEAGLRLVYGAGDVGLMGTVARAAQAAGGETFGVIPEHL
VKQEVGKRDLTTYVVTETMHERKKVMLYNADAVVLLPGGMGSLDELFEAITWRQLGLHNKPIVVLNTEGY
WEPLRALITHVVEEGFADAAHAAHLQWVDTPEAALASLQS
>gi|99080820|ref|YP_612974.1| peptidoglycan-binding LysM [Ruegeria sp. TM1040]
MTKTSGIGAGASLAIGTVATVVVVGGGVFLARGGILGEGARSMVEQQLVALGLAAPPAPEVVPVKPVVTQ
PQTADPETRVVEPEPTPEATAGETVETQQDAPTAEPAFVLQAPKLEIARFEPDGSGIVAASAQAGVEVQV
LLDDEVLDTQTVPAAGEFVSFVTIDLSDKPRLLTLLARHNGQELASEDSFILAPMPAPAAPEPQVDQLAA
AQTDSDIAAPEEEPIELAEATETADPNVADQATDAPDPDAPGDGAAEGSTTVTAQSEEVALADVAVDSTD
PDAEGDASSTESAASGAADNGVATDMAAVENTGDQLPDAASEAVSEASPEAVDPSVDVAEATSALPETEV
TAEDAPAAEAPEETVETAALEQAIDDESARESSEDSVPAPEPEVAAVADTSEPPAPDTTPAPQSPVEVAE
AVDTPEVPSSKTDTMAAVEEVQQPQPQDPDTESPSGEAAPAPQATSSVAVLRAGRDGVTLVQPAAPAAPE
LVGKVALDTISYTETGDVQLAGRARPEALVRVYLDNSPVAELAAASDGQWSGSLTSVAPGIYTLRLDEID
PVDGIVLSRLETPFKREAPEVLQPAVTADQAPDQAAPVVRAVTVQEGDTLWAISQQRYGSGFLYVRVFEA
NKGDIRDPDLIYPGQIFTLPE
>gi|99080821|ref|YP_612975.1| ABC transporter related [Ruegeria sp. TM1040]
MPPMDDPTAAEERRSGLRTLRKVWPYVWPEQGRAVKIRVLLALLVLVAAKGIAVVTPIFYKGAVDALAGE
GVPVLALGAIGLTVAYGMARVMNTGFQQLRDVIFAPVTQRALRRLAITTFRHIHAMSMRYHITRKTGGLS
RIIERGVKGVEFLLRFLVLSIGPLLLELTLVAVVLAWWFDIWYLVAVAVTVALYVWFTFAVTEWRVKLRR
EMNRQDTDANQKAIDSLLNYETVKYFGAEDREAARYDVAMKGYAEAALKTAYSLGALNFGQAVIITTGLV
SVMVMAAMGVERGAMTVGDFVMVNAYMIQITGPLGFLGTVYREIRQSLVDMGEMFDLLDQPPDVQDATDA
RALQVSGGQIQLENVRFGYDPEREILKGVSLTVEAGQTVAIVGSTGSGKSTIGRLLFRFYDVSAGRLLID
GQDVREVTQKSLHAAIGVVPQDTVLFNDTIRYNIAYGRDGATEADIVEAARAAQIHDFIEGLPQGYDTPV
GERGLKLSGGEKQRVGIARSLLKNPPILLLDEATSALDTDTEQEIKGALARAGQGRTVITIAHRLSTIAE
ADRIVVLEQGEVVETGTHEALLAEGGRYAQLWQRQQADRDMASGAA
>gi|99080822|ref|YP_612976.1| calcium-binding EF-hand [Ruegeria sp. TM1040]
MKTIAQIATAIVMTAAAPVTAQNFAVEVDADGNGTLSFEELRLAYPALTEEVFAQVDLDASGGADLEEVI
AAQEAGLLVING
>gi|99080823|ref|YP_612977.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MSESSPQQRNAESTRKRILAAAQRRFSKQSFDATGMREIAAEAGVNVALVNRYFGSKEQLFEEAVVEAIT
IDALLAGPQDGFGRRTASAMLSKDFKYIDLDPTAAFVNSLGSPVVGERLRRAVEERLLPEISGWLGGAHA
DQRAAMIFSALLGFDVLRRMARIDALNTRHGPVLEDLCAATLQSYVDGAPDTED
>gi|99080824|ref|YP_612978.1| short chain dehydrogenase [Ruegeria sp. TM1040]
MTTSKHKVIVVTGASSGIGKTGALRLISEGYTVYGAARSVDKMQDLVVAGGHALPLDVTDASSVKQAVAQ
VLKEQGRIDVLWNNAGYSVAGAVEDVPLLDARQQFEVNLFGVAEITKTVLPQMRKQRSGLIINTSSVGGK
VFSPLNAWYHASKFALEGWSDALRLELAAFNIDVVVLEPGGIKTDFGRTMYEPLLKRAEGGAYEAFTQRI
AASYERYYTANDSTLSPPSVVGEAVAKIVQSTRPPTRYAVGYMARTALALRWLLSDRLFSRMIMTQF
>gi|99080825|ref|YP_612979.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MFLASWFRNMPVKRKILLPGMAGLLMMICVITTYWTQRLSTALYSGFEEQVALTESYIAAPLATAAWNYD
GDLANTTLASLAERESFVFARVVSSGDVLAEAFKGEAMEEAWIAQSTSLLESDQVRLEDGDFTYFKTPLM
FEGEEAGNMVWALDTSIIANQIMNANIIAASLGFAIFAGFSVVFYLIAVAVSRPIENVVTHIDALQHGDT
TREIPEANRRDEIGALGKALVDFRDTSAEQKRMEEEKRKQDAVQEHVVTVLSEALGKLSTGDLTVSIKDD
FPADYEKLSKDFNALVNRLFDTVSAVVDAADSIQNGSTEISSASDDLARRTESQAATLEETAAALDELTA
SVRQAAEGAGSVSNTMEEAKAEAVNSGTIVNNAVSAMTEIEQSSNHISQIIGVIDDIAFQTNLLALNAGV
EAARAGEAGRGFAVVASEVRALAQRSSDAAMEIKTLIGDSSKQVERGVDLVGKAGDALHNIVERVTQISG
LISDIAQGASEQSAGLGDINSGMVELDQVTQQNAAMVEEATAASHMLKANAVNLAQMVAHFQLGAGGRAA
SAAPAPAAKDAETIAPSAHGEDWDYTPEPSQVAVASSGNAAAKIWEDF
>gi|99080826|ref|YP_612980.1| hypothetical protein TM1040_0985 [Ruegeria sp. TM1040]
MRHCDDSLTATRPCPIILYLIGADASRMARIAQGTNEPAPITCLISIGPVPMEKLNTAPFITLGARLEVK
TWITMQLSA
>gi|99080827|ref|YP_612981.1| hypothetical protein TM1040_0986 [Ruegeria sp. TM1040]
MAEPSAFVRDNLATRAFGGIAPLLFADRAKRVSLRVLQADRRSGYTNEASAFHRTIFNTLVEPCERPHCW
ISDPSPNGIGAKQSRSKTLNKDWDCASFCAIAMTA
>gi|99080828|ref|YP_612982.1| acriflavin resistance protein [Ruegeria sp. TM1040]
MIGLVNWAADRARMVLAFIAISLLVGGFAYVSLPKEGEPDIEIPALFISVPFPGISAEDSETLLVKVMET
ELADLDGLDKMSATAAEGYAGVALEFDFGWDKTAVMADVRDAMDSAEAEFPEGAEKYAIHEINFSEFPIV
IVNMSGPVPERTMARLAKDLQDDLEALDSVLEAGIAGNRDEMVEVLIDPLRLESYNVTAVELINVVQNNN
QLIAAGEVESDQGTFSVKIPSSFDSVEDIYGLPVKTNGDRVVTLGELAEINFTFEDRQGTARFNGADTFA
LQVVKRKGFNLIDTVDQVKATLEKSQAKWPPELQAAVTLGTSNDQSRVVGSMVSQLEGSVLTAVALVMIV
VLSALGSRAALLVGFAIPTSFLLCFAFLAVMGISVSNIVMFGLILAVGMLVDGAIVVVEYADKRIAEGSG
PMHAYVEAAQRMFWPVVSSTATTLCAFLPMLFWPGVPGEFMGMLPVTLIFVLSASLVVALIYLPVMGGVT
GRLSRAFGVASDALRRTLPWVVRVALVPVSLWGMFAGAMQLLNPGYLIDAGESIWATFLGALIFILFAVA
ASITLGAAELQRRQRRVVAGQRLGGFGWVIKMIVGNPVMPIVTLVVVGFGIVTVFGLFQTNNHGVEFFVE
SEPEQATAYVRARGNISLREKDEMVRATETLIMQHPAVINVFSFAGEGGLNTDASGASTPPDTIGQVQFE
IIPWEDRPTQSEPILGGLFEREVTADAFDGNTVLDELTQLTDTLPGFEVEIKALEGGPASGKPLHLRIKG
DEWEPLRAATEMAREKFETTPGLTLIEDSLPLPGIDWEIDVDVAKAGRYGADVATVGAMVQLVTRGILLD
TMRVDSSDEEIEIRLRLPDEQRVLSTLDTLKLRTEEGLVPLSNFVTRKPVPKLAEISRVEQQRYYDVKAD
VEPGLSRVLTEDDSGETVSLAVVKAIPEGIAPSGETVTLPSGALVEVKTLTGVGSVAELNEALSSGSTQT
VAINANERIAELTTWLESSPFDASIDWEWTGDQEEQAESGAFLMKAFAGALGLMFVILLAQFNSFYNSIL
VLLAVVLSTTGVLIGMMVMEQPFSIIMTGTGIVALAGIVVNNNIVLIDTYQEFSQHMPRLEAIIRTAEAR
IRPVLLTTITTMAGLAPMMFGVSLDFVNGGYSIDSPTALWWKQLATAVVFGLGVATVLTLVVTPSLLAIR
VWFWTYVVALLRLLARVTGGRGSQIARDMELAKKARRLPSTEVDWTAPDWPDSTKPPAQKGTTEPPRIGP
KPLEAAE
>gi|99080829|ref|YP_612983.1| secretion protein HlyD [Ruegeria sp. TM1040]
MRIIPLLTAAVVTAGLYAVVMERDSLLAFARGEDAPSADATDAQAEPGDASTDVAQSGPKVAVVAVHSTA
RAIDNAVVLRGQTRAIRQVNVLAETSSTVISEPLRKGASVKKGDVLCELDPGTRPASLLEARARLAEARA
NIPAAEARLEEAKAVLEEARINLTAAEKLSEGGFASETRLASARAAERTAQAAIATAEGGLTSSHASIES
ASAAVDAAEQEIERIVIHAPFDGILESDTAELGSLLQAGTLCATVIQLDTIKLVGYVPETSIDRVEMGAA
AGARLATGQQVTGTVSFISRSADETTRTFEVEITVANPDLKIRDGQTAEIVIAAEGTKAHRLPQSALTLN
NEGQLGVRVVRDDMTAGFVPVTLLRDEASGVWLDGLPEEANVITVGQDFVTEGVALAPTYQEMSE
>gi|99080830|ref|YP_612984.1| hypothetical protein TM1040_0989 [Ruegeria sp. TM1040]
MSDTDSFIDEVTEEVRRDRLFLMLKRYGWIGAAAVLLIVGGASWREYSNAKAVGAAQDVGDKISAALASD
APEARAAALAEISADQAGAQAVVDFAQAAALVDAGEVEQAAALLDGIAQNGDLAQVYRDIAAFKSVTLQA
ETLAPEERRLRLETLAAAGGTMQFLASEQLALLDIEEGETDAALARLRDIAASAGVSRDLQERVSQVIVA
LGGSLDEAAQEG
>gi|99080831|ref|YP_612985.1| Pyrrolo-quinoline quinone [Ruegeria sp. TM1040]
MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPRVVTNTAWQQS
PGQPTTRTAHAALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLDAASTVSAVSPAGAVLWQHTI
EPASDDADDATGGGIAYADGVLYVSSGFGVLSALDAKTGAPVWRQELDATGSGSPTIRDGLLYLVAGDDT
AWVIDTKDGRIAWQLEATPSASNILGAPAPVVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSA
ISQIGDVTGAPFMDGNRVYVGNQSGRTAAFDVASGDRLWTAFEGTFGPVWATGGSLFFVSDRSQLMRLSA
NDGSPIWSVDLPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFFDPVDGRQTRTVEIKGGATTE
PVVANGTLYVVTRDGQLAAFR
>gi|99080832|ref|YP_612986.1| GTP-binding protein EngA [Ruegeria sp. TM1040]
MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLEDATDNSLEG
RMRRLTERAVEMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANKSEGSAADAGVLEAYGLGLGE
PIRMSGEHGEGLNDLYSELLPVSEKFEKLAEETAPETDVVLDEDENEAFNAGEEIAATPVPTLEKPLQVA
VVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLKIDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVS
DGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVIAVNKWDIEDEKQEKLKALKEAFERLLPQ
LRGAPLVTVSAKTGRGLDRLHAAIMKAHDVWNRRVPTAALNRWLAGMLEQHPPPAPQGKRIKLRYMTQAK
TRPPGFVVMCSHPDKMPASYNRYLVNGLREDFDMPGTPIRLTLRGQGDKNPYKGKKKSTPSRLRKHLEGR
KS
>gi|99080833|ref|YP_612987.1| fatty acid desaturase [Ruegeria sp. TM1040]
MDLRAYTRQYTKKDNRLAALNYFGTFVVYFTSLYLAITYSNLWFVMWPAGIVFAFSAVRLYVLQHDTGHH
SLFETRAQNEFAGHVLSPFTFAPFEVMKQNHNLHHANVGNLEHRETGEIHTMTVEEWNRAGFLERVLYRL
YRNPFVLVPLGAAFTYFVRYRWPKNTVEFGVFPVLLHNIAIIALLYGLYLLAGAEGLWIWLGFSFLGGMI
GVFLVYLQHNFEDTYWDRRPDLDPRDAALQGSSCLDFGWFFDFAVANITLHDIHHYNARIPCYRLRQCHH
NMPEHMSLRRIKFREAIRALGLKLWDEKQKRLVPFPS
>gi|99080834|ref|YP_612988.1| helix-hairpin-helix DNA-binding, class 1 [Ruegeria sp. TM1040]
MTPILRLPGVGPALAKALQDHGIRSVEDVAARSEAELTAVPRLGVARAQRLKAAAQDMTKAAAEPAAPRA
AKSTARAKAPAKPRTARVKPAKLKAVEAAKDAAQSAAKAVKAGVNASEEETRESLQSAVAAAEAARLAAE
EKAAKAEAKAAKAAKKAKALMAQFAEAKEKASSKAAKEKTKAKKEIAKEKAKAKKILKEQSDEKPKKSKK
AKKKKKKDK
>gi|99080835|ref|YP_612989.1| seryl-tRNA synthetase [Ruegeria sp. TM1040]
MHDIRAIRENPAAFDAALARRGDSALSSQVLELDEARRAKILAAETAQADQNKAAKAIGAAKAKGDEAEF
ERLRAEVADKKAEVAAMQAEAKELDAKLTDMLARIPNSPAEDVPDGADEDDNVEVKRWGDVPAFDFDPKE
HFEIAGVAKAMDFETAAKISGSRFVVLKGAVARIHRALAQFMVDTHVDENGLTEVNSPVLVRDEAMYGTD
KLPKFGEDSYQTTNGWWLVPTSEVPLTYSVAGDVIDEAALPIRYTAHTLCFRSEAGSAGKDTSGMLRQHQ
FEKVEMVSIVHPETSDEEQKRMLGCAEGILEKLGIPYRTVVLCTGDMGFGARRTYDIEAWVPGQNTYREI
SSVSTTGDFQARRMNARFKPADGGKPEFLHTLNGSGLAVGRCLIAVLENGQQADGSVKLPDALAPYLGGK
LTLTAEGQLA
>gi|99080836|ref|YP_612990.1| protein translocase subunit yajC [Ruegeria sp. TM1040]
MEGGAIAQFIPLILIFAIMYFLLIRPQQKKMKQHQNMVEALRRGDQVVTQGGVIGKVSKVKEDGELEIEI
AEGVKVRVVKSTIAQVLNKTEPAS
>gi|99080837|ref|YP_612991.1| preprotein translocase subunit SecD [Ruegeria sp. TM1040]
MLQIDTWKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAAIELEGETPERLDVAAQWPEWMPSGLVNLG
LDLRGGAHLLAEVQVGDVYAARMDALWPEVRNTLRDERATIGTFRRIPDAPADQIRLRLSDEAGMSRALE
LVRGLANPVTSLTGAGATDITVSGQGDVITVSLSEEEKLASDDRTVRQSLEIIRRRIDEVGTREPTIQRQ
GSDRILIQVPGIGSAAELKEIIGTTAQLTFNPVVSRGSDAEANAGIGNKVIPSLDEPGTYYTVETAPVVT
GEELVDAQPAFDQNGQPAVNFRFNTAGARKFGDYTAQNIGAPFAIVLDDEVISAPVIRSHIPGGSGIITG
NFTVEESTQLAVLLRAGALPAKLEFLEERTIGPELGQDSIDAGKVATVVAFAGVLVFMMLSYGLFGVFAN
VALILNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEGYSKALS
AIVDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWFERRRPKTIEV
>gi|99080838|ref|YP_612992.1| preprotein translocase subunit SecF [Ruegeria sp. TM1040]
MRLKLVREGTSFDFFRLWKLWLGISAMMVVIGFASFAIQGLNFGIDFRGGTTIRTEATQDLDIGVYREAI
APLELGDITITEVFDPTFDEDQHVAMIRIEAQEDGEALSSDVIAAVQGALDAVAPGIKFISVESVGPKVS
GELVQTAVIAVALAIGAVLIYIWLRFEWQFALGAVAALVHDVILTIGVFSELQIKFDLAIIAALLTIVGY
SLNDTVVVFDRVRENLRRYKKKPLAEVLNISINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIW
GVIVGTYSSIFVASTILLWLGVKRDWSKNNDTTGNQFANIDA
>gi|99080839|ref|YP_612993.1| hypothetical protein TM1040_0998 [Ruegeria sp. TM1040]
MRLNEVVYSDALPIDGYGPGFFRVGGEIKEGAMLTGAKGTSAWGGYEDAEPLLALAGEVDVLFIGTGAEI
AHIPGALRQALEAEGLGVEVMNSPAACRTYNVLLSEGRRIALAALPV
>gi|99080840|ref|YP_612994.1| cytochrome c biogenesis protein CcmA [Ruegeria sp. TM1040]
MIEVRDLGVSRGGLPVLAGVNFALSGGEALVLRGPNGIGKTTLLRTLARLQLPLAGEILGDAEDIAYAAH
ADGVKLTLTVAENLSFWSRVFAGGDPAVAIAAFNLDALQHRPAGGLSAGQKRRLSLARLMVTGRRLWILD
EPTVSLDAASVQLFASSIRAHLASGGAAIMATHIDLGIEGRVLDLGPFKAKLPALDAEDLGGFL
>gi|99080841|ref|YP_612995.1| heme exporter protein CcmB [Ruegeria sp. TM1040]
MIALLMRDLRLALRAGGGFGLGLAFFLIVTVMVPFSVGPEAETLAKIAPGVLWLGALLACLLSLDRLLAL
DWEDGSLDLLATAPLPLEGVLSIKALAHWLTTGLPLVLAAPVLGVLLGLPAGGYLWITLSLLLGTPALSV
VGTFGAALTVGLKRGGLLLSLLVMPLYVPTLIFGAEVARRGAAGLAVETPMLMLGGITLGTIALLPFASA
AVLRVNLR
>gi|99080842|ref|YP_612996.1| heme exporter protein CcmC [Ruegeria sp. TM1040]
MSIWEYANPKKFLRTSERVLPALWGISALLIVSGLIWGFFFTPDDYRQGSTVKIIYLHVPAALMAINAWF
MMLVASLIWVIRRHHVSALAAKAAAPVGVVMTLIALVTGAIWGQPMWGTWWAWDPRLTSFLVLFLFYIGY
IALWEAIENGDTAADLASILCLVGSVFAVLSRYAVNFWNQGLHQGASLSLDKEENVADVFAFPLYTCMAG
FGALFIALVLYRTGTEIRARRMSALIARERMMDA
>gi|99080843|ref|YP_612997.1| Heme exporter protein D (CcmD) [Ruegeria sp. TM1040]
MPDLGKYAETVLSAYAVSLVLLVALLVVTFLRGAKVRAALKDVEERVRRNG
>gi|99080844|ref|YP_612998.1| periplasmic protein thiol [Ruegeria sp. TM1040]
MAKISLMMAIPVVVFSGFVGLALVGMGRDDPESLPSAREGKAAPSVALSDFPGKESFDDATLRDGTVKLV
NYWASWCGPCRAEHPSLTALSEEGVPIYGVNYKDQLANAQSFLEELGDPYAGVGRDEQGRMALDWGLYGV
PETYVIDGDGTVVLRFAGPITSRVLEETIRPAMERAAQ
>gi|99080845|ref|YP_612999.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MMRTVLVTGGTYGLGLAIAARFAPDHNVLRSFKKTPPRDDLEAQPNVVSCACDLLQDGAAEDLVAQAMGQ
FGRIDVIVNNAGLVQSTPKAQFDLSEHRKVFELNTIAPQAVLAAALPHLRPGAAIVNISSVNATLPPRDA
ASYGASKAALNLWTKAMAKELGPEGIRVNAVAPGAINVPEAPRSEELTQIFVKDTALGRIGTPDDIAKAV
RFLASEEASFITGEILTVAGGYRL
>gi|99080846|ref|YP_613000.1| hypothetical protein TM1040_1005 [Ruegeria sp. TM1040]
MIAAFTRFFPNREHFDEVLERAVVMARDEEKCRVGCLETRLFCDRDGGEITTVSLWESMEILEEYLVKVT
SDGSLMEFQSHYLRREIDTNVYETVDLGVNAQLPKETELQRRFGT
>gi|99080847|ref|YP_613001.1| aconitate hydratase [Ruegeria sp. TM1040]
MPITVGQDTAKTRKTLSVNGKSISYYSIPAATDAGYGDFTKLPAALKVVLENLLRFEDGGFSVSTDDIKA
FGDWAKNGGKNPREIAYRPARVLMQDFTGVPAVVDLAAMRDGIKTLGGDANKINPLVPVDLVIDHSVMID
EFGNPRAFQMNVDREYERNMERYQFLKWGQGAFNNFRVVPPGTGICHQVNLEYLAQTVWSDVDQNGEEVA
YPDTLVGTDSHTTMVNGAAVLGWGVGGIEAEAAMLGQPISMLIPEVVGFELTGEMVEGTTGTDLVLKVVE
MLRELGVVGKFVEFYGSGLDNLPLADRATIANMAPEYGATCGFFPIDKETIRYLRNTGRDEDRIALVETY
AKENGFWRDETYAPIYTETLSLDMGTIVPAISGPKRPQDYVALDGAAQAFKQVVSEYRGVDASANAAEMA
SEGPAPTAPVDPCKSHPVKGEDFALRDGSVVIASITSCTNTSNPYVMIGAGLVAKKAHELGLNRKPWVKT
SLAPGSQVVSAYLEAAGLQEHLDAIGFNLVGYGCTTCIGNSGPIQKEFSEAIAEGDLVATSVLSGNRNFE
GRISPDVRANYLASPPLVVAYALAGDMNVDLARDPLGQDKDGNDVYLKDIWPTQKEIADLVEATVTREAF
QSKYADVFKGDEKWQSVETTEAETYDWPAASTYIQNPPYFQGMGPEPGKIQDVIGAKPLLILGDMVTTDH
ISPAGSFATTTPAGKYLLDRQVQPREFNSYGSRRGNHEIMMRGTFANIRIKNEMLDGVEGGYTKGPDGAQ
TSVYEASMAHHEAGTPLVVFGGEQYGAGSSRDWAAKGTALLGVKAVIAESFERIHRSNLVGMGVIPFEFT
GGDTRKSLKLTGDETVDIRGLETVTPLQEVECDITYGDGSKKTITLKCRIDTAPEIEYIENGGVLHYVLR
NLAKS
>gi|99080848|ref|YP_613002.1| hypothetical protein TM1040_1007 [Ruegeria sp. TM1040]
MVIELFTSQGCSSCPPADELVKHLAERQDVLPLAFHVDYWDYIGWADIFADPAYTDRQRGYAHVGGRNMI
YTPQMIIMGREDVVGADVMEVSEALSAYLGQKPKVQLTTGRSEEQLTVSAPALPDGMSGQFRVQLVRYKP
LERVEIKRGELAGNTVDYANIVESLEVLADWTGAEPLEVTASFAGELPAAVLVQEWPFGPIFAAARVE
>gi|99080849|ref|YP_613003.1| lipid A biosynthesis acyltransferase [Ruegeria sp. TM1040]
MPVAQSELVFSQRAKYFASNLVLRALIGGLKLIPYRWRVPSMGWILRMLAPLVGFHKRVRRNLEYTRPDL
SNAEVNRLCHEVADNVGRTLAELYAGKPFWARANAADISGPGLEALKRAQAEGRPVILVTGHFGNYDAAR
SKLVQMGFNMGSLYRRMANPYFNEHYVKAISATGKPMFEQGKRGMVEMVRHLKAGGNIAIVADMHAMGGT
YLPFFGRPALTSTVPAELALKYKAAFIPIYGIRRENGMDFDVVVAEEIAHSDPVTMTQAVCDDLEQRIRA
HMGQWFWLHRRWKPMHDTPHPDYPKR
>gi|99080850|ref|YP_613004.1| flagellar motor switch protein FliG [Ruegeria sp. TM1040]
MEQSSALALPMASPDMGLGDFSPAPPAPALSGGVPQLSGKAKAAIVVRLLLNEGADVPLEELPDDLQLEL
TQQMGKMRLVDRQTLHAVAAEFAEQLENVGLSFPNGLAGALTAMEGKISRHTHSRLRKEAGVRQFGDPWE
RLRKLPPEELAELAKAESTEVAAVLLSKIDTAKAAEMLQHLPGPLARRITYAVSQTSNVTPDTVDRIGLS
LASQIEARPQMAFEQTPGQRVGAILTQSAAAKREEVLTALDEEDQEFATDVRKSIFTFALIAEKVEPVDV
PKLVRALGPQEITTAIAFATRDDDVASVNFLLENMSSRMANNLREEANQLGRVKQADGEAAFGLIVNMLR
EMVVNGDIELKSDEEEE
>gi|99080851|ref|YP_613005.1| tetratricopeptide TPR_2 [Ruegeria sp. TM1040]
MRFTALALALALPLSLPVAGLAAGGDTTTPPKPSDTTKECWGKRVWDDEAKKCVKPEESSLNGQELLETA
RELAYLERFDDAQAVLAAHPVQTDSRVMTYWGFTHRKLGRSDIALDYYTRAIAQNPDNILARSYMAQGFV
ETGEYAKALAEWKEIKARGGEGTWAETSLRHAIQTGVTVNY
>gi|99080852|ref|YP_613006.1| adenylosuccinate lyase [Ruegeria sp. TM1040]
MIPRYARPDMVAVWSPETKFRIWYEIEAHACDAMANLGVIPRENAEAVWKAKDVEFDVARIDEIEAVTKH
DVIAFLTHLAEHVGSEEARFVHQGMTSSDVLDTCFNVQLTRAADLLMVGMDKLLDALKKRALEHKDTVRV
GRSHGIHAEPTTMGLTFARFYAEMDRNKKRLIAAREEIATGAISGAVGTFANIDPRVEEHVCEQLGLNPE
PISTQVIPRDRHAMFFATLGVIASSIENIAVEIRHMQRTEVLEGAEFFSMGQKGSSAMPHKKNPVLTENL
TGLARLVRMSVIPAMENVALWHERDISHSSVERGIGPDATVTLDFALHRLAGVIDKMLVFPENMLENMNK
FPGLVMSQRVLLALTQAGVSREDAYSMVQRNALKVWEERLDFRELLLADAEVVAALGEDGINEKFDMGYH
TKHVDTIFKRVFGE
>gi|99080853|ref|YP_613007.1| hypothetical protein TM1040_1012 [Ruegeria sp. TM1040]
MIDINVRRVLSARLSGASNKRMPAMGLMRKLGHSADLVNGMSQRLGVDQAARMARDPEREARRLMQMVTR
CAGCHEQVACGALQAENDHLSACPSYCENKASFEIPETQV
>gi|99080854|ref|YP_613008.1| OsmC-like protein [Ruegeria sp. TM1040]
MPTERISFAGHAGHDLAARLDLPEGPVLATALFAHCFTCSKDIPAARRIAARLAAMGIAVLRFDFTGLGH
SGGEFANTSFTSNVADLIAAARYLASRNMAPDMLIGHSLGGAAVLRARAGIPSVKSVVTLGAPFDPGHVA
HHFEDALEEINRTGRAEVNLGGRPFVIGKEFVDDIGQTELGEAISDLRAALLVMHAPRDATVSIDNAAEI
FGAARHPKSFVTLDDADHLITDPCDAEYAADMIATWATRYVDMKPPAPPPGAPEGVIRVTEADPQGFLQD
VQNGPYHHLLADEPEAYGGTNRGLSPYGFVAAGLGACTSMTLRMYARRKDWLLEGISVEVCHDKVHAQDA
IPSGPAKIDRFMRVIHLQGDLDAEQRAKLLEIADKCPVHRTLEQSSRVETRLEDAPKLPDMSREGQDLDT
ASI
>gi|99080855|ref|YP_613009.1| NUDIX hydrolase [Ruegeria sp. TM1040]
MGVQDIAAPSEAMEALAGIGRFAPLDARDREMWARLSAFCAEFGAEGPGAFGRDPGIGHVTASAFVLSAG
LDAVLLTHHAKLNRWLQLGGHCDGIEDACFVATKEAYEESGLRRIRLLSPEVFDVDVHEIPASSKEQQHL
HYDVRFLFVAEAGDPVASAESHALAWVPLSALSTEPESVAVLARKWPLWHARLGL
>gi|99080856|ref|YP_613010.1| endonuclease/exonuclease/phosphatase [Ruegeria sp. TM1040]
MRLRRWARMGLWGGLALSMLALSGGYLGALHPLGDSLAVFRVPFAGGAIVFAFLLRHDVRAALFGLLASV
GMLGMWLGHSGGGQDLTAPELTLYQQNLLWRNAGNARLVAAIRDSGADLVTLEEVSDQNLPILQSLQPDY
PVQHVCAFRKVGRVAVLARGLRATQRLTCAEDLGLAAMEVEGPKGRFWVAALHLPWPWPHEQAAHVERIV
AELTALEGPMILAGDFNAVAWSHTVKRIGAAGGMARVGPYGATFELPPLGYPIGIDHVLAPKGLGVIERQ
PKLASDHHGLLARLPWPEAQD
>gi|99080857|ref|YP_613011.1| peptidase M24 [Ruegeria sp. TM1040]
MNEHFRDRRKIDPSRGAVLGDGTPNDNDRIEIGPTQLAFAEWTAAGLSLPNLEAMRSYRWQRLTQAIVDR
DYGGLLMFDPLNIRYATDSTNMQLWNTHNPFRALLLCADGYMVMWDYKNSPFLSTFNPLVREQRSGADLF
YFDRGDKVDVAADALSNEIRNLIAEHGGGNKRLAVDKIMLHGLRALEAQGFEIMEGEEVTEKARAIKGVD
EILAMRCASHACETAVRAMEDFARLNVGDGTTSEDDIWAVLHAENIRRGGEWIETRLLASGPRTNPWFQE
CGPRITQRNEIISFDTDLVGSYGICVDISRSWWIGDEKPRPDMIYAMQHAHEHIMTNMEMLKPGVMIPEL
SAGTHVLDAKYQAQKYGCLMHGVGLCDEWPLVAYPDHAVEGAYDYPLEPGMVLCVEALVGEVGGDFSIKL
EDQVLITEDGYENLTTYPFDPALMGQE
>gi|99080858|ref|YP_613012.1| hypothetical protein TM1040_1017 [Ruegeria sp. TM1040]
MTEILHRTLPYHPMTPRPLPGIEPLAPEDWLRFDEGFAPQMQERTRLLRDHADAVLAMAPEAEPAAQELL
DHVLAARYGAGRQVQRITRPDGIEVALNRAAPMETLGHIAQQDFCILEKPEGSTEHILTAAVLCFPASWT
LSEKVMKPLLAIHAPVQDYDSGIARRVQRLFDGVQAGRPLWRFNALWYADPSLHQPRLEQDPRPTSTPET
RAYLRSELQSIYRLPQTRAVVFSIHTQVLARADVLSQWGDEKTPQ
>gi|99080859|ref|YP_613013.1| hypothetical protein TM1040_1018 [Ruegeria sp. TM1040]
MWLSEVQFLPHLPARAKPPRNIFIIYSNLRQTDERRAPWNFTTIYLSFPPKFLRFRNLPWVGPQPMEDFT
VLDQTTQNVQTSAYRGKLGFGERDEAALSKASVLVVQTLEEFGHEVDQFHTKRAHRIRLECDHYIVDIRH
RRSPHPMRQSDGNPCRSHLDLILTPRFPDHVDAELTEMILARTLQSLLAELDATTVEWLETGIMLDRDAF
LAAFAPETQSEEQTAPLDGVDLACDIQLPIDDQSATPIGDARPAATPVMAPVMAFDSYAARNADAEQDAR
EAPQCPKGAARFAPVDETFGSLSLACDRVIERRAPAQKDLSATYKKVSGALSLENCNPNKASAWVLTAIM
ALFSLPLGITAAAVNFIRGGDMRFSVQMMALLAVLVFLESTVLLNAAVN
>gi|99080860|ref|YP_613014.1| hypothetical protein TM1040_1019 [Ruegeria sp. TM1040]
MLFSRLAALGLVTCLAVATPEVVRAASCGNTAAGFEAWKADFARTAKRAGVRQAGLNALAQTRYATGTIA
ADRNQKSFRYSLEKFMQVRGATTIVAQGRRHKARNAEFFAALERKYGVPAGLLIAIHGMETAFGNYMGDS
QVVSSIVTLTYDCRRSEFFEPHAIGALKLVDQGAISMATKGAKHGELGHTQFLPGNALKYGQDWNRDGRV
DFYDMGDALASTAHFLRQKGWRPGKGYQQGEPNYKVLKQWNAATVYQQSLAIMGRQIDGS
>gi|99080861|ref|YP_613015.1| molecular chaperone, DnaK [Ruegeria sp. TM1040]
MNSPAMSPNTLGIDFGTSNSAAGLAVAGRPWLVELEPGETTLPTAVFFDSDSKKMRIGRSATRALIEGEE
GRFMRALKSLLGTSLLYEKRRLGGVTMDFTDVIAHFLREVKTRAETATRMEFTHALSGRPVKFHSKDETR
NARAEEDLRHCYKKAGFQDVTFMYEPEAALRAARPHPGIGLVVDIGGGTSDFTCFEQDATGGTRILASHG
LRLGGTDFDRQISIDHVMPHLGRGAMIRNSFGEGSLPAPNRIFNDLATWQMIPFLYGLDTRRAARDLAQN
AEDPTTLNRLVQVLEDELGHDLAFATEAGKIRANGSDDAGAQIDLRLIERGLSAALPRAALEASLAQMVR
EIQDEAKETLRLADVAPEAVTRCVMVGGSALLMAVRAALQDLCPTAEIETERALTAVADGLALETQDGAA
>gi|99080862|ref|YP_613016.1| hypothetical protein TM1040_1021 [Ruegeria sp. TM1040]
MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKPAQRFLSIACC
VMLAACGEVPASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNGSIADFNVSVLPSAPDYKVFS
GRCAAGVVTDSSTMQNQLVSRPAGASGVVPIQNRPVPNAPAQNATSAPVPVPTAGNRGGWDGSTPFVD
>gi|99080863|ref|YP_613017.1| L-glutamine synthetase [Ruegeria sp. TM1040]
MSKDAVLKLIKDEEAEYVDIRFTDPRGKLQHVTLMSDQVDEDFLDEGFMFDGSSIAGWKSIEASDMKLIP
DTESAYVDPFYAEKTICIHCSVVEPDTGEAYERDPRGTAEKAEAYLKASGIGDVAYMGPEAEFFLFDDVR
FSNSINKVSYEVDATDASWNTDAEYETGNMGHRPGVKGGYFPVNPVDESQDLRSEMLSTMKRLGMKVDKH
HHEVASCQHELGLIFDSLTKQADELQKYKYVIHNVAHAYGKSATFMPKPIAGDNGTGMHVNMSIWKDGKP
LFAGDKYADLSQEALYFIGGILKHAKTLNAFTNPSTNSYKRLIPGFEAPVLRAYSARNRSGCVRIPWTES
PKAKRVEARFPDPAANPYLAFAALLMAGLDGIKNKIDPGEAMDKNLYDLPAEELADIPTVCGSLREALES
LAADHDFLLQGDVFTKDQIEGYIALKMEEVETYEHTPHPVEYQMYYSC
>gi|99080864|ref|YP_613018.1| nitrogen regulatory protein P-II [Ruegeria sp. TM1040]
MKKIEAIIKPFKLDEVKEALQDVGVQGLSVIEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVLDDDQV
DAAIEAIVAAAKTDKIGDGKIFVSPVEQAIRIRTGEAGSDAL
>gi|99080865|ref|YP_613019.1| YjeF-related protein-like [Ruegeria sp. TM1040]
MVEVVTAQQMRALEQAAIASGAVTGCELMECAGNAVVAAILEHWPEFAGRADGGAAPRPAAVPRDISEKL
KRAVVLCGPGNNGGDGFVVARLLKLRGWAVEVFFYGDAAKLPADAKVNYQRWCALGDVHRLDAATLASGT
KVQHADLVVDALFGTGLTRPVDLPLGVICEVARNVVAIDVPSGLCSDSGRVIGAAAVQADLTVTFHAQKL
GHVLAEGPQHCGTVRVASIGLEGHELPVAAVPTVSFDAPDHADLAKGSGAHKFSYGHALILSGGAGQTGA
ARLAARGALRIGAGLVTLGVSPAAQMEVAGHVTAVMLRRVEGADGLEAVLQDARINALCLGPGLGHERAR
ALVPVALAAGRATVLDADALSAYSDAPDALFDQLHKNCVLTPHGGEFARLFPDLAQRLAEPATRGPAYSK
VDATRDAAARAGCTILFKGADTVIADEAGDCAIHDAAGARAAPWLATAGAGDVLAGFITGLLARGLAAHD
GATTGAWLHADCARQFGPGLIAEDLPEQLPHVFRKLGL
>gi|99080866|ref|YP_613020.1| hypothetical protein TM1040_1025 [Ruegeria sp. TM1040]
MSYSKSPPSLAGSDQHARSVRAGLRPLSGIGAATEVLTRTGYKHASKLSVGDHVITRDRGLQPITRITRQ
FARSRMVRFAAEALGTDKPEQDVLLPARQLVLVRDWRAEALFGRHEARVQAAALIDDHYITEAGMQQLDC
VQIWLDAPSVLYVRGMEVLSAHAFDDTLAPRVVPIPQACRPL
>gi|99080867|ref|YP_613021.1| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [Ruegeria sp. TM1040]
MSLYTDYLNEIETRKGEGLHPKPIDDGALVAELIAQIKDTGSEHREDSLKFFIYNTLPGTTSAAGVKAAF
LKEIILGEAEVAEITPEFAFELLSHMKGGPSVEVLLDLALGEDAGIAQQAADVLKTQVFLYEADTDRLEA
AYKAGNAIAREILESYAKAEFFTKLPDVDDEIKVVTYIAAEGDISTDLLSPGNQAHSRSDRELHGKCMIS
EAAQKEIEALKLQHPDKRVMLIAEKGTMGVGSSRMSGVNNVALWTGKQASPYVPFVNYAPVVAGTNGISP
IFLTTVGVTGGIGLDLKNWVKKVDSDGKAILNNDGNPVLEQKYSVETGTVLKIDTKNKKLLSEDGEELVD
VSSAFTPQKVEFMKAGSSYAIVFGKKLQTFAAETLGIEAPLVFAPAKEVSHEGQGLTAVEKIFNRNAVGS
TPGKTLHAGSDVRVKVNIVGSQDTTGLMTSQELEAMAATVISPTVDGAYQSGCHTASVWDKKAQANIPRL
MKFMNNFGLITARDPKDQYHAMTDVIHKVLNDLTVDDWDIIIGGDSHTRMSKGVAFGADSGTVALALATG
EATMPIPESVKVTFKGKMADHMDFRDVVHATQAQMLKQHGDNVFQGRVIEVHIGTLLADQAFTFTDWTAE
MKAKASICISNDDTLIGSLELAKSRIQIMIDKGMDNEAGTLQGLIDKADKRIAEIRSGEKPALSPDDSAK
YYAEVVVDLDEINEPMIADPDVNNEDVSKRYTHDTIRPISFYNAEKKVDLGFVGSCMVHKGDMKIVAQML
KNLEKANGKVEFKAPLVVAAPTYNIIDEMKAEGDWEILQKYSGFEFDDLFPKSQARTEYENILYLERPGC
NLCMGNQEKAAKGDTVLATSTRLFQGRVVEDAAEKKGESLLASTPVVVLSAILGRTPTIEEYKTAVEGID
LTKFAPPVEKPAGTRSAHF
>gi|99080868|ref|YP_613022.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MLRLSNLKLGLKLPLLIVFPVVVIVLVSGALQLFQMKQAVEREHEVSFLGVVEGRKDALEYWLAEVEAEV
VALSDSYAVRLATQEFSEAWQTFDGEASSALRSLYIDDNPNPVGQKDVLNTAEDGSAWSQVHERHHAGLR
AHLRAHGYYDVFLFDLDGNLIYSVFKEDDFGLNFETGKYKESGLGQVYRNGLTLAEGQFFMSSMAPYAPS
AGAQAMFMSTPVFLEGERIGVLAVQFPLDGIMHILSQSEQLGETGVVYLVNEQGLSLTASPREGGFAAFE
ALPEREQIKSALSGQSGYFDPVVGMHGDEVLAATTSVTVPNGSEWGLVLEINHDEAMAVVNTAIRSAVIE
LAITIALVVGISSMAVRGLVKRLERLAGHVESLADENYEEEISGCDQRDEVGFISETLVHLQGRLQEGAA
AKERERVIQEGNEMVVRTLSKALMNLAKGDFRNHILEFFPVEHKKLRYSINDAMTELSDVIEEVREVASS
ISKGAAELSESADDMSSRTESQAATLEETAAALEEVTASVKSANEHVMNVEHTVSQARGMAENSGVIVTE
TIEAMNGIESSSQQISQIISVIDDISFQTNLLALNAGVEAARAGEAGRGFAVVASEVRSLAQRSSEAALE
IKTLIETSGEQVGRGVQMVGKTGDALTQIVDQVKEIAGLIEEIAKSSQEQSTALIEINVGMSQLDQVTQA
NAAMVEENTAASHLLRQDSQRLAEFVSRFRTQKDAKSEEAPKALPVPAEAAKPTAHGEEWQDSATEATPV
TVDLAADEVDDVPQPKRANERWSDF
>gi|99080869|ref|YP_613023.1| signal transduction histidine kinase with CheB and CheR activity [Ruegeria sp. TM1040]
MTENNISPLHPAQTGAHRKIGKVDERFYIVGVGASAGGLDAIKQLLARVPVDFAHSFVVVQHLSPDYKSV
MTEILGRETQHKVVEVSDNMRVEPKHIYVIPPGANIVIQGTEDDLDDRVIGSSAAPSASKPVHEGLRFSL
LAPQPRPALNLPIDIFFRSLAEAVGKRAIGVILSGTGSDGSRGLRSIKDREGLVIAQEPATCGFDGMPQQ
AIATGLVDQVLQPDDIVGEISRFIDLRDRGISDVDEIFDGAQDSFRAILETVSKQAEIDFALYKEPTLQR
RIARRMGFLGLSNLEDYLSYLGENSGEVQLLYREFLVGVTNFFRDLPVWQAMETRVLERLFAEGDTDQPL
RVWSAGCSTGEEAYTLAMLLQKFRDDNQIERDFRIYATDVNENAINTAKQGIYPDHTLEEIPEAYRNAGY
ITHHPGTFAISPTIRSQIVFAVHDITLDPPYTRTDLIVCRNLLIYLGPDVQAKVMVNFSMSLRINGYLLL
GAAETPGSDGVRFEYFMGKERIFRNKRVARAGSGRAKLATQMPALGMLPRTRRMMSSGLSIQDDLSALFQ
FSLEAGQMSICVLDQGSNILKTFGNMQTLLHIPEGGFSTNIFDLCDDRLRSSIALVVRGVEDQTTAQASD
MRLIEGDSVRTVSVSARKIIWEGHASAVALFVRQITQTLPKAAAENSDEEPQIERSAYIEHLESEVRSLQ
EMLGVTAQDLGASNEELQAANEELIAANEELQANNEETQSINEELHTVNSENIDRIAELEEVNADVDNLL
ETAALGILLLDTDMCIRRFSAGVTRYLDLKHSDLGRPLESFATALLPEAVTLLVDDARLARDQGEETQRE
LRRRDGGFVQTRVRRFNRQRGDSHGVVITLLDITDTKLLEQEARRQSEILSSVLESEESGYWDWNIPEDK
LYISRRFVEFLGFGVGELAPNSSAWQGLIHSDDRPQFHEAYRAHVNARGEVPFLIEARYLTKEGEEVWIR
SRGQVTDWGQDHRPLRMIGVHQNISDLRAREDDIEKRADDMRRFAYVLAHDLKQPLNTIEGSVQALDEEL
PKTLDADIHELMRFLQQGTQRLKARVNAVLDYARLQDQTTRFEPCDLAQIIDACLVDLEDTVAQANAEIV
VEPLPAVSGTPELLVRLMRNLLSNALKFRDPARPLKITIAAINAPYGRVGLRVDDTGIGIAPQDRARVFE
LFSRLHVESEIEGSGLGLAMCDQIVSIHGGQLEVVEAETGGASFRFTLPAAPAAPDGA
>gi|99080870|ref|YP_613024.1| response regulator receiver protein [Ruegeria sp. TM1040]
MTTSSPRILLIDDCDADRYFFKRNLRKLDPEARLIEFAYADEALEYLKTPGKAPVDFIFVDIDMPRLNGF
QFADVYHSLYPELKGHARLFVCSSSIDPTHRQRTEDHPDIDGFYEKPLSRDALNEIL
>gi|99080871|ref|YP_613025.1| histidine kinase [Ruegeria sp. TM1040]
MLFLGLLTFACALALLMGASLAQSQETVRVPWTEAPPMMMSDAEGQPSGFTVELAQMLAQEAGFDIEFRH
YDRIDEVTAAQARGETDMLAGVDLIDVFQPQNRISDPIARITVSLAVPTERAEQFDPTNLDGKRVAVIPP
ILGSDPDLLPGATLVNHTNPEAALVSVLSGQADAMSYSTNVTFAMLRAARLDGRIAFLDPPLLETTRGVV
VHQSRPELLERINAVLPQLEAKGSLQALREKYLLAIPAPVPDTLTVGVHHVPPFVSISEDGTPGGFGVEI
LESLAERAGLKLRYQRITDAEFGRGPRQGGVDVMPMMASNPTRRARMDFTFPVHRVPFSIFTLHEAAIAP
QGLDDLIGLRVGVEDGKNAAQLAEVHGGLTLSYHEGKDGIMNALLQGQVDAVLAPNSAFTSHLERNHLRD
KVLISREPFYTSESGPALRLGLGEVREALNAVIPAYLISEDYERLQQEWFGTPTFWTSARLRMLLALGLA
FLLFALGFGIWQKMQRSRAQERQARLLQQSRQLEVLVDELERSNRELDSFADIASHDLKEPLRGIQWQVQ
ALQERAAEALPEEICRIEQLCAQMETTISDLLASAQHRGKGSDIADIETGDVVDEIRTELAELLTETKGE
LRVETPLPRVHASRAKAKVVFQNLIANGLIYNRSDTPVVRVGYLSEDTPDDSGLLHVFYVRDNGIGIATE
DQGQIFQPGVRGKHSGMRRLPGTGGNGLGLSFAKEIVESYGQLIAFETTPGEGTTFYFSLPNAKGEEAIS
VTGEARLADAK
>gi|99080872|ref|YP_613026.1| response regulator receiver protein [Ruegeria sp. TM1040]
MTKVLIVDDSPEDTEMLRRFCSELPSCVIETAASGSEGVARFEKWHADCVLLDYHLADNNGLSVLADLKA
RDPFVPVIVLSGRGSEELAAATMKAGATRYLTKRGLSLDMLRTAIEASIRWMQHAALSQRK
>gi|99080873|ref|YP_613027.1| hypothetical protein TM1040_1032 [Ruegeria sp. TM1040]
MMSTKTLAVGSSALALSALLAAPAVAGPTYTSDNGGSFRWYGQLNLAYQGYDDGQEDYNRLVDNGNSGSR
VGFWLEQPFGENTLKFRFETSLSLRGSDGVNQNDQGDITDWTRSDLRHVDLQWHTPRYGTFSLGQGSMAA
DGATGIDLSGTGVVAGSAVADAAGGYFLRDTAGNLTGIEIGDVFSTFDGSRRGRIRYDSPEFSGFTVSAS
YGEDILTRDADTQQYDIALNYLNEDLGDFTVAGALAVSWTEKGGSEDTRDTIASAAVLHEPTGLSLSAAT
GDRDTGGDYGYVKLGYTANLISVGATAFSVDYYDGSDLVSTNDSAESFGIAAVQNFDQQNLEAYIAYREY
SYDDASATNYQDGSAILAGARWKF
>gi|99080874|ref|YP_613028.1| trigger factor [Ruegeria sp. TM1040]
MQVTETLNEGLKRGYAITIPATELEEKVNAKLAEAQPEIEMKGFRKGKVPMPLLKKQFGARLMGEVMQEA
VDGAMNKHFEESGDRPALQPDVKMTNEDWKEGDDVNVEMSYEALPAIPEVDVSGVELEKLVVKAEDAAVT
EALENLASSAQEFEAREEGAASEDGDQVVIDFVGKVDGEAFDGGSAEDYPLTLGSNSFIPGFEEQLVGVK
AGDAKDVTVTFPEEYGAEHLAGKEAVFSCTVKEVKAPKAAEINDELAKKFGAEDLDQLKGQISERLEAEY
AGAARQVMKRAALDALAELVSFDLPPSLVEAEAKQIAHQLWHEENPDVQGHDHPEIEPTDEHNKLAERRV
RLGLLLAEMGQKAEVEVTDQEMTQAIMQQARQYPGQERQFFEFIQQNAQMQQQLRAPIFEDKVIDLVFDQ
AKVSEKEVSKEDLQKAVEALEEE
>gi|99080875|ref|YP_613029.1| hypothetical protein TM1040_1034 [Ruegeria sp. TM1040]
MPACMPDWRELQIPLAERKVSVSTLACYRIVRSDPVYRSRAGLGGEAKDFSLAIVFDADFIFARGKFIKF
GNSKALG
>gi|99080876|ref|YP_613030.1| diguanylate cyclase [Ruegeria sp. TM1040]
MAAQTARTRVDFYLGACLAVVCAGMVVLNVCRADYILAGAIAALLLSVGADLQAAYRGRTLPIPIPAILI
GLGAVILFSVWRLGPQLGFYVFPTLIGGYLAMPGRGALWYSITLIAGVTAVLVAIGADTALVLRLGFALL
ICVVFLSYAAKRIVEARDSLEDSAFLDPLTGCFNRRHLARVAQSQDLSKAALILFDLDYFKSVNDTYGHP
TGDFVLRAVTSLVRQFLGPEDLFFRIGGEEFMVLRLRSEEGSTRALAEKCRAALDDSQILSSRRVTATFS
CAEFDGRTEIEPVLGQADVALLQAKRAGRNRVV
>gi|99080877|ref|YP_613031.1| bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein [Ruegeria sp. TM1040]
MSWQINRRSFLAGSAGLIALHPFSVAAASGQVHLRLMETTDLHVHVFPYDYYGDKPVDTLGLARTASLIN
DIRAEATNSLLVDNGDFLQGNPMGDYIAYERGMKEGDQHPVITAMNTVGFDASTLGNHEFNYGISFLMKS
LAGAGFPVVCANVAKKTGASPREDETLLPPYVILERELTDGAGKAHPIKIGLIGFVPPQVMNWDRKHLEG
NVQARDIVECARAYVPEMKEKGADIIIALSHSGIGSADHSDGMENASVPLAAVEGIDAIMTGHSHLVFPS
STYADFAGVDADKGTIHGTPAVMGGYWGSHMGLIDLMLERDGNGWRVVGHASEARPISKRNEDRSVTALV
ESDQSVLEAVQADHDATLAYVRRAVGKTDAPLHSYFALVADDPSVQIVSIAQTWYISQMLKGTEYEALPI
LSAAAPFKAGGRGGPEYYTDVPVGDVAIKNVADLYLYPNTVRAVKVTGQQVKDWLERSAGMFNQIEPGKA
DQVLLNPSFPSYNFDVIDGVTYQIDLSQPPMFAPKGELINPDSNRIVNLEFNGAPIDPAQEFIIATNNYR
ASGGGSFPGAMGDTIVFEGPDTNRDVIVRYIVEQGTISPKADGNWSFAPLPDTSVLFDTGPKAAAYAESV
PGVTIAPAGDGPDGFARFKITL
>gi|99080878|ref|YP_613032.1| lytic transglycosylase, catalytic [Ruegeria sp. TM1040]
MHRRHLILTLAALFLNSVAGCARTDNDVSRSFNPPLYPNETPELRKKINYWADYYEVPRSLVHRLAIRES
THRPWAVNRPYYGLLQILPATARSMGFRGQPQELLDADTNLKYAVRYLRGAWLISDGSQDNAVKHYSRGY
YYEAKRRGMLKETGLR
>gi|99080879|ref|YP_613033.1| flagellin-like [Ruegeria sp. TM1040]
MSSILTNNGAMVALQTLKSVNDDLGKVQTSISTGKEVGTAKDNSAVWAISKTMESDIAGFEAIEDGLSVG
EATVAVASAGAEQIVEKLTEMKELIVSAQSENVDHAKIQTDIDSKVAQVDAIISAAQFNGANLLATDVDG
NGATSLGVLASLDREGAGGTVTAVEISVASVDFEADLDLSSSLTSITDSTTAATALGEIETMIQTAITGA
ASLGADAARLEDQSEFVGNLVDSMTLGVSTMTDTDMEEASARLSALQTQQDLATQSLTIANEAPSSLLQL
FR
>gi|99080880|ref|YP_613034.1| flagellin-like [Ruegeria sp. TM1040]
MSSILTNNGAMVALQTLKSVNDDLGKAQTSISTGKEVGTAKDNSAVWAISKTMESDIAGFESIEDGLSVG
EATVAVASAGAEQIVEKLTEMKELIVSAQSENVDHAKIQTDIDSKADQIDAIISAAQFNGANLLATDVDG
NGATSLGVLASLDREGAGGTVTAVEISVASADFESGLDVAGMTSITDATTAATALGEIETLIQTAITGAA
ALGADASRLEDQSEFVGNLVDSMTKGVSTMTDTNMEEASARLSALQTQQDLATQSLTIANEAPSSLLQLF
R
>gi|99080881|ref|YP_613035.1| flagellin-like [Ruegeria sp. TM1040]
MSLAMEPSQMSSILTNYGAMTALRTLKAINGNLNDVQTSISTGKRIGAAKDNSAVWAISKTMEADISGFR
SIKSSLALGEATVAVASAGAEQIVEKLTEIKELIVSAQSENVDHDTIQTDITSKVDQIEAIISAAQFNGA
NLLSTDVDGNGATSLGVLASLDRSGAGGTVTSSEISVASVNFDSSLDLASNLTAITDSTTAATALTEIED
FLQVAINGAASLGSSASRIEDQSDFVGRLVDAMEQGVSAMTDTDMEEASARLSALKTQQELAIQSLTIAN
QSPRLLLELFRR
>gi|99080882|ref|YP_613036.1| hypothetical protein TM1040_1041 [Ruegeria sp. TM1040]
MRTNVQRYRCGSCKKTFSGRTGTRIARIHRPGLFFDVLKDMPGPRPLSSVRVLARCLGLNKHTVWRWRLI
ALSALSGTSDTDFSGIVEADETYQRESRKGSREWIRHQRDPLDDSKPPRMRWYE
>gi|99080883|ref|YP_613037.1| hypothetical protein TM1040_1042 [Ruegeria sp. TM1040]
MWFRGVWPIWYTTNQISGAVGMEDKNDRVSTSLALLVVLWPAGLWLIGFFVAQLARLNGCRIWARGPEEC
LFLGTDVGEYIYPLWSLGFYLMGVFLWIPIGLILLGVIRFIRRAS
>gi|99080884|ref|YP_613038.1| 50S ribosomal protein L9 [Ruegeria sp. TM1040]
MQVILLERVAKLGQMGDVVDVKPGFARNYLLPQGKAQTASDANIAAFEAQKAQLEARNLETKKEAEALGE
KLGGQQFVVIRSASDGGNLYGSVTTRDAADVATEEGFSVDRKQVIIREPIKTLGLHIAEVHLHPEVMVTI
ELNVARSPEEAELQASGKSIQELAAEEEAAAEFEISELFDDIGGAASDDEGDAPAAAADEEESK
>gi|99080885|ref|YP_613039.1| 30S ribosomal protein S18 [Ruegeria sp. TM1040]
MAAKPFFRRRKVCPFSGENAPKIDYKDTRLLQRYISERGKIVPSRITAVSAKKQRELARAIKRARFLALL
PYAVK
>gi|99080886|ref|YP_613040.1| 30S ribosomal protein S6 [Ruegeria sp. TM1040]
MPLYEHVMIARQDLSNSQAEGLIEHFGAVLSDNGGKLVDQEYWGVKTMAYKINKNRKGHYAFLRSDAPSS
AVQEMERLMRLHDDVMRVLTIKVEEHAEGPSVQMQKRDERDNRRERR
>gi|99080887|ref|YP_613041.1| hypothetical protein TM1040_1046 [Ruegeria sp. TM1040]
MAMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWLMPESGADPQM
ALIRIGVSVFLLFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRPVVLMRRSYASLGAARFDGKV
LQILETDGRLLAELPLEGRATRKLLLAQLRPHLRIVS
>gi|99080888|ref|YP_613042.1| YceI [Ruegeria sp. TM1040]
MKKILLAAALIGTTATTAFAAPEKYTLDASHSQILFNYNHLGYSTTWGMFSGFEGEIMFDQEDPANSSVS
VSMPVKSMFTGWEGRFNHFMSDDFFGATDDEMVSFTSTAIEVTGEDTAKITGDLTLNGVTKSVVLDAKLN
KVGEHPMAKKPWAGFDATTTLVRSEYELGQFAPFVSDEVEVQISVEAMKAE
>gi|99080889|ref|YP_613043.1| ABC-type amino acid transport/signal transduction systems [Ruegeria sp. TM1040]
MLKATSFVAALSLALFQSPSHASADEITILAGDLPPMFNEDGSGREAEVISTVMERCGHTVTFEIQPFTR
HWKTYSNGTADAVATVPVGMPLGGTQSDVYVQYQNGVSFLSEAGESYGDLAALAGHSVIAFMGASDILPG
LKDAVPSFKSYKEIADQIGQSRMIFGKRVDAVVGDGMIFAEYNRQLREQSGDLMFDPNQSVTFQAIFAPS
DYAMNFRDAALAEDFNRCYAEAKADGSIDAINKAWAERYRDTLGTQYLGH
>gi|99080890|ref|YP_613044.1| cytochrome B561 [Ruegeria sp. TM1040]
MSRQNTPQSYGSITKSFHWLTALLILTAFPLGYFATELAEHIQSSAFDGSQATIDRATLLFSLHKTIGVA
VFFTALLRILWAITQEKPGLLHPDRKLEAWAAETAHWVLYGAMVIVPLSGWIHHAATDGFAPIWWPFGQN
LPLVPKSEFVSKLSSSVHFYAMLLLGASILAHVGGALKHHVIDKDSTLVRMLPGRRALPEPPAQHHSALP
LLTALVVWGAVIGGSTMLFLNTQSAKGTVAPVAAAPVEGSGWTVENGTLAIEVVQMGSAITGTFSDWRAK
IDFEEPASPGPAGRVEVAIAIPSLTLGSVTDQAMGSDYFDAETYPQATFEAEIIQIEGAQYEAKGTLTIR
DQTVATTLPFTLDLDGDTATMSGRTEVNRLDFNIGTGTQDEGTLAFGVDITVDLVATRAP
>gi|99080891|ref|YP_613045.1| [Acyl-carrier-protein] S-malonyltransferase [Ruegeria sp. TM1040]
MSIAFVFPGQGAQTIGMGKALAEAYPAAKAVFNEVDEALGESLSHLIWEGDIETLTLTQNAQPALMATSM
AAMRALEAEGVSIDKAAFVAGHSLGEYSALAAAGALSIADTARLLRTRGQAMQSAVPVGVGAMAALLGLD
FETVKAVAAEAAAEGEVVQAANDNDPTQVVVSGHKAAVERAAEIAKEKGAKRAVMLPVSAPFHCALMQPA
ADVMAEALAGVEIKAPAVPLIANVRADAVTDPDTIRALLVEQVTGSVRWRESVAAMAAKGVTEFWEIGAG
KALSGMIRKIDRSLVSKQVGTDADVKAVTGA
>gi|99080892|ref|YP_613046.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Ruegeria sp. TM1040]
MFDLTGKNALITGASGGIGGDIARALHAAGATVALSGTRPDPLHALAEELGERAHVVTCNLSDAEAVEAL
PKQAAEAMGSVDILVNNAGITKDNLFMRMKDEEWQSVLDVNLTSTMRLCRGVLRGMMKARWGRIVNISSV
VGATGNPGQGNYAASKAGMVGMSKSLAYEVANRGITVNAVAPGFIATAMTDKLNDTQKEAILSQIPAGRM
GDSKEIAAAVLYLASQEAAYVTGTTLHVNGGMAML
>gi|99080893|ref|YP_613047.1| acyl carrier protein [Ruegeria sp. TM1040]
MSDVADRVKKIVVEHLGVEEDKVTESASFIDDLGADSLDTVELVMAFEEEFGIEIPDDAAETIQTFGDAV
KFISEAS
>gi|99080894|ref|YP_613048.1| histidine biosynthesis [Ruegeria sp. TM1040]
MMIYPTMELLDGRCVTLDKGNLDAPMIWHVDPVETAKGFAEAGAEWMHLTDFNALQGDSSNQDLVEELIR
TAGLPIQLGGGIRSREQAEFWIEKGVGRVVIGTMAAYDPAAVAELAKYYPDQVVLAVDVWQGQVMTEGWR
KSGAWTPEAFVKAFGNAPFAGILVTDIDSDMSDLDAQLGLISGLAEQAHSPVIASGVVRSKDDISRLKYL
PNISGALVGRALFNKTITLEEAMETAQPNPEPVAEFL
>gi|99080895|ref|YP_613049.1| 3-oxoacyl-(acyl carrier protein) synthase II [Ruegeria sp. TM1040]
MRRVVVTGLGLVTPLASGVEETWARLLDGQSGAGPITLFDAEASGVATTYACEVPRGDGSNGTFNPDDWV
VKKDQKKIDDFILYGIAAAEMAVKDAGWTPEAEEDRLRTGVMIGSGIGGLSSIADTAVMIKEKGPRRVSP
FFIPGALINLISGQVSIRHGFKGPNHSVVTACSTGAHAIGDASRLIKSGDADVMIAGGAEAAICEIGIAG
FNACKALSTKYAEDPTKASRPYDADRDGFVMGEGAGIVVLEEYEHAKARGAKIYGEVLGYGLSGDAYHIT
APSEDGEGGERSMRAALANAGLSAADVDYINAHGTSTMADTIELGAVERLLGDHAKNATMSSTKSATGHL
LGAAGAIEAIFSILAIRDQVAPPTINLDTPAVETPVDLAPNAKRERKIDVALSNSFGFGGTNASVVFGKV
SD
>gi|99080896|ref|YP_613050.1| aminodeoxychorismate lyase [Ruegeria sp. TM1040]
MWRSLASNMLTILIVGLFLFAGVILWGKNEYTAEGPLSEAICFQVPSGTNMARVSRRLESDGVVSSGTIF
RIGVKYSDKAQDLKAGSYLVEPGASMEGIVDQITRGGASTCGTEIVYRVGVTRVLAEVRELDPATNAFVE
RAEFVPGVDETPAVYTEKKSEADTRYRIALAEGVTSWQVVESLKAMDILEGEPGRRPPEGSLAPDSYEVR
PGTSREAVLAEMQARQDRRIADAWEARSPDAAVKTPEEMLILASIIEKETGVAEERGVVASVFTNRLRRG
MRLQTDPTVIYGVTKGEGVLGRGLRQSELRGATPWNTYVIEGLPPTPIANPGLESLVAAVNPDQTDYVFF
VADGTGGHAFAETLEEHNRNVAKWRKIEAERNNN
>gi|99080897|ref|YP_613051.1| hypothetical protein TM1040_1056 [Ruegeria sp. TM1040]
MGARIAGPGRALILASRFSRRIVQRRGCAPMTSQTPEELIEISSELLRSLHESLRRARRVSEEYLAQYEA
EQDINPDTAQLKPQIARLDGLIRDIQKVEKTLVDRKDSSGAARMVAFDLCAARDEIERRLAGLRAAIHDA
DLAGGDG
>gi|99080898|ref|YP_613052.1| hypothetical protein TM1040_1057 [Ruegeria sp. TM1040]
MDDHTLAALPYMFDLWALPHQCPPLGDWRAWVILGGRGAGKTRAGAEWVRSQVEGAGPFGVGSARRVALV
GETYDQVRDVMIHGDSGILACSPPDRRPEWRAGERRLLWPNGASAQAFSASDPEVLRGPQFDAAWVDELA
KWRRAQEAWDMLQFALRLGTAPRVCVTTTPRNVPLLKGLLQSPSTVTTHAPTEANSANLAPSFLSEVRAR
YAGSRLARQELDGVLLADVDGALWSSDMLAEIQRRDTPRLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQ
GPISSWRAYVLADHTVQGLGPTGWARAAIAARDAYKADRLVAEVNQGGALVGTVLRQVDPLVPFTPVHAS
KGKAARAEPVAALYEQGRVHHAPGLQELEEQMCLMTAQGYRGDASPDRVDALVWALHALIIGPAEQHRCP
KIRRL
>gi|99080899|ref|YP_613053.1| Phage portal protein, HK97 [Ruegeria sp. TM1040]
MVFDLLRRKTGRVDQTAAAAPSLKASAAARVLPMGNGTRAAWGPRDTVSLTRAGFMGNPVGHRAVKLIAE
AAAALPLVLQSTEARYESHPLLALLSRPNATQARAEMLEALYANLLLSGNAYLEAVAAEEGWPVELHVLR
PDRMRVVPGEDGWPVGYDYAVGGKTHRFAIDPARPAICHLKSFHPLDDHYGLAPLQAAATAVEVHGAAAR
WSKSLLDNAAQPSGALVWTGSDGLGQMGDDQFRRLTEEIEANFQGARNAGRPMVLEGGLDWKQMGFSPSD
MEFHRTKDSAAREIAQAFGVPPMLLGIPGDATYANYQEANRAFYRLTVLPLAMRVAAKLSDWLMRFGTEA
VELKPDLDQVQALSSEREAQWRRITAADFLSEAEKRQMLGLPPRTAEVADD
>gi|99080900|ref|YP_613054.1| hypothetical protein TM1040_1059 [Ruegeria sp. TM1040]
MTDYPLPPFDCAPSQRLSAHERVSEIRQEALNRRLDRMEQMMERLEKRLWITVYGVAAVILAQAFQGFLS
VQMP
>gi|99080901|ref|YP_613055.1| peptidase U35, phage prohead HK97 [Ruegeria sp. TM1040]
MLTEHAPELETKFARFGEALTLTEGEVIEGYASLFGVADQGKDIVTRGAYAASLAAHQARGSKVKMLWQH
DPSHPIGVWDEILEDETGLRVKGRILTETQKGAEAAALVRAGAIEGLSIGYRTLKATRDKEGHRRLEDLA
LWEVSLVTFPMLPSARVSRTARRAAEAAKSDAPEAGLRALAEALRAATNP
>gi|99080902|ref|YP_613056.1| phage major capsid protein, HK97 [Ruegeria sp. TM1040]
MTDHPFTGHAPEDAATPPQNVATEVKQAVSQFVQHFKGFQDDVTQKLKQTEERMTMLDRKTQTAARPHLA
AAEVDGAPHQKAMQAYLRQGDEEGFRGLDLEGKAMSTAVNSDGGFLVDPQTADVVRSVLHSTASIRAVAS
VVNVEATSFDVLIDHSDVGAGWATETGSVTETGTPSIDRIVIPLHELSALPKASQRLLDDSAFDIEGWLA
GRIADKFARAEAQSFISGDGVDKPTGILTHPTVDNGSWSWGNIGYVATGSDGGIGSADAIVDLVYALDAR
YRAGASFVMNSKTAGLIRKLKDADGRFLWSDGLQAGEPARLMGYPVLVAEDMPDVASDSLSIAFGDFAAG
YTIAERPDLRVLRDPFSAKPHVLFYASKRVGGDVSDFAAIKLMKFGLS
>gi|99080903|ref|YP_613057.1| phiE125 gp8 hypothetical protein [Ruegeria sp. TM1040]
MILHELTPLPDSALPLAAFKAHLRLGTGFGEETLQDAVLLAFLRASLAAIEARINKALMQRDYVWRLNAW
PRVVELPVAPVSSVTQVALVDQTGAETEVPAAAYALAPDAHAPRLTPVAGLWPMLPTQGGAVIRFTAGMA
ATWDAIPADLAQAVMLLAAHYYEYRDDTSLHAGCMPFGVASLLDRHRMPRLSLARSEVQS
>gi|99080904|ref|YP_613058.1| hypothetical protein TM1040_1063 [Ruegeria sp. TM1040]
MSAPRLNRLLHLEDPQATGDGAGGFEVTWVVLGQHWAEVDALTGRETGRGGTSLSLQRYRIILRAAPQGS
SARPRPDQRFREGSRIYKIDAVAEHDPQGRYLQCFATEELAT
>gi|99080905|ref|YP_613059.1| hypothetical protein TM1040_1064 [Ruegeria sp. TM1040]
MTYALSHSLQTAVYQHLMADAALAAEVGTAIYDMLPSGSLPGLYVTLGAESVRDRSDVTGGGALHRFTVT
VVANAAGFSAAKRAAAAVSDALVDAPLTLARGRLVGLWFDRATAKRLSNGDRSIALRFSARLEDS
>gi|99080906|ref|YP_613060.1| Phage major tail protein, TP901-1 [Ruegeria sp. TM1040]
MSAQNGKDLLIKVDMTGTGSFTTIAGLRATRISFNAESVDVTSLDSAGGWRELLGGAGVRSANLSGSGVF
RDADTDERARQLFFDGETPAFQVVIPDFGTVEGPFQVTALEYAGSHNGEATYELSLASAGALTFTAA
>gi|99080907|ref|YP_613061.1| hypothetical protein TM1040_1066 [Ruegeria sp. TM1040]
MANPYRGEVTLVLNGQPQVLKLTLGALAELEAELGEGDLISLVQRFESERFSSRDMLALLAAGLRGGGSE
ISRADLAQAEIEGGVMQATRVAAQLLALSFALPTEDA
>gi|99080908|ref|YP_613062.1| hypothetical protein TM1040_1067 [Ruegeria sp. TM1040]
MSRAAMLDWPALMRAGMLGLRLTPREFWQLTPAELRLMLNLDASTPPMDRDRLSHLMTQFPDHINDVNQP
E
>gi|99080909|ref|YP_613063.1| phage-related minor tail protein-like [Ruegeria sp. TM1040]
MANTTDSDFESQTGPLEDSLGDAAGMAAQFTAEMDRVRAAFAATQADAADFETGLSRGLRRAMKDLVVDG
DSLSDALTGLAKTMIDTTFNSAMRPVTDHLGGLVSDGIGALVGGILPFADGAAFSQGKVTPFARGGVVSS
PTHFPMRGGLGLMGEAGPEAILPLARGHDGSLGVKTQGGGTSPTVVMHVTTPDVAGFQRSRGQIAAQMSR
MLARGNRNR
>gi|99080910|ref|YP_613064.1| hypothetical protein TM1040_1069 [Ruegeria sp. TM1040]
MSFHEVRFPETLSFGSVGGPERRTDVVTLANGHEERNTPWAHARRRYDAGLGLRSLEDIAALIAFFEARQ
GQLHGFRWKDWTDYASSLPGQEVTFEDQLIATGDGDRRVFQLAKRYRSGPHEYLRPISKPVAGTVRLGID
NEALVEGVDYGLDLTTGLVTLAYVPEIGREIRAGFEFDVPVRFDTDRIQTSVASFQAGEAPNVPVVEVRV
>gi|99080911|ref|YP_613065.1| phage protein [Ruegeria sp. TM1040]
MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQSTGLAVDNSE
ALGALSSDAVREADIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIRRAGGAFEAELRGLTEALNQP
LGRVFQKPCSAVLGDAACKFDLSTAGYAVEIDVETLRDGQLFAWASLDGFAPGWFTGGRLTVLGGAGAGL
WAPIRSDSLNARREITLWQPIRADIQPGDLVRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVP
KRTGQNTGGSRR
>gi|99080912|ref|YP_613066.1| putative phage cell wall peptidase, NlpC/P60 [Ruegeria sp. TM1040]
MSRDINTEAVALARLWLGTPYRHQGATRGAGCDCLGLIRGLWRSLYGSEPEPVPPYTRDWAERGSEERLW
RAALRHMQPAQDPMPGQVILFRMRAGAVAKHLGLQSESARFIHAYSGHGVVESALTPAWQRRIVARFAFP
DPNDL
>gi|99080913|ref|YP_613067.1| hypothetical protein TM1040_1072 [Ruegeria sp. TM1040]
MATLVLAAAGSAVGGAIGGSVAGLSTAIIGRAVGASLGRVIDERLLGSGSAAVETGKVDRFRITSGSDGE
PMAQVFGRMRLGGQVIWATEFVETATTTSSGGKGTTPSHSTTSYSYSLSMAVAICAGEITRVARVWADGE
EVAPRDLNMTVYRGTPDQQPDPLMEAVEGAGQVPAYRGTAYVVFENLDLERFGNRVPQFSFEVLRAEQPS
GAAYEQDLAQIVPGVALIPGTGEYSLASQPVYMQQGPGAQTAANINQISGETDLVASVEALTEELPLAEA
VSMVVCWFGDDLRCGDCTLAPKVEQKLADGSMPWQVAGLTRVSADEVINNAGTAVYGGTPADQAVVQAIQ
HLNAQGKRVMFYPFILMEQQAGNTLPDPYSNAESQPVLPWRGRITLSTAPGRSGSPDGTALADAEVASFL
GSAQANDFTISGGQVSYHGPNEWSFRRFILHYAALCAAAGGVEAFCIGSELRGLTQIRGAGGFPFVQGLK
DLVSEVRALLGPEVKLGYAADWSEYFGYQTPEGDHLFHLDPLWSDPQIDFIGIDNYMPLSDWREGEDHLD
AQEWPAIYDLGYLKANIEGGEGYDWYYHSPEAEAAQIRTPITDGAYDEPWIYRNKDMRSWWSLPHHDRIG
GVRSETATDWVPQSKPIWFTELGCAAIDKGTNEPNKFLDPKSSESQLPRSSNGLRDDLIQQQYLRAQFTY
WQEAAHNPTSSTYGGAMVDLSHAYVWAWDARPFPAFPNRVEVWDDGENYARGHWLNGRAGQRTLASVVEE
ICREAGVTEIDASQLWGIVRGYAVYDVAQARSALQPLMLRHGFDAIERDGKLIFRLRDGLHALNLEPEAL
AVLPEMDGDQEQSRMPEAELMGRVRLRFVEWGGSHDTVAEEAVLPDEATHAVSQNDLPMALTRAEGRQVV
QRWLAEARISRDTARFALPPSMALEVAAGDVVRLPGQDGEGAARYRVDRVEQAEAQILEAVRIEPVVYQP
LATAEDLPRDTAFAAPTPVLPLFLDLPLMRGDEVAHAPHVCATARDWPGAVALYGADLGGDFQLEDLLPA
RATVGITQTDLLAGPVGRWDRGADLEVELIAGTLESRDGLSVLGGANRLAIGDGSPDTWEVIQFAEAELI
APGRYLIRGRLRGQYGSDAVMPEVWPAGSYVVLLDAAVEQLDLALSDRRIARDYRFGPSRRAYDDPAYVG
LSAAFDGIGLRPYAPVHLRTAQTLGADMGFDWIRRTRIEGDSWDLEEVPLGEETEAYRVRVRSGATILRD
VRVTVPAWTYSAAEQASDGVQAGDVVEVAQISARFGAGAVAQWALA
>gi|99080914|ref|YP_613068.1| hypothetical protein TM1040_1073 [Ruegeria sp. TM1040]
MRPVPCATDILRPVLWEDIRSLARALLAHPAQRRGALCQEILKGAARARVYAAATGRCHPRWGDGSVDRA
ARRFPLAPEPFPGAPDYAGCLQMALAAAQHRKP
>gi|99080915|ref|YP_613069.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040]
MANGTVKWFNSTKGYGFIAVEGRSNDVFVHISAVERSGLTGLADGQAVTFEIQSGRDGRESATDLALA
>gi|99080916|ref|YP_613070.1| serine O-acetyltransferase [Ruegeria sp. TM1040]
MLDTHKAVRQIDPVWGRITEEAERAVAEQPLMGGLIHACILHHKTLDKALSYRIAAKLCSNEMSMVILRE
IVDGAYEAEPALVEAARADLMAVFERDPACHRLLQPILYFKGYQAIQAYRVGHWLWQQGDWDLAYFFQMR
ISEIFGVDIHPAAKIGKGIMIDHAHSIVIGETAVVGDNVSMLHSVTLGGTGKEEEDRHPKIEDGVLIGAG
AKVLGNIRIGHCSRIAAGSVVLQEVPPCKTVAGVPAKIVGEAGCDQPSVSMNQVLAGK
>gi|99080917|ref|YP_613071.1| hypothetical protein TM1040_1076 [Ruegeria sp. TM1040]
MTAYIIGQLQIQSRDWMEEYYAKVPQVLEAHGGRFLVRGGDPARMEGMDPTPDAAVVLEFPDRAHAEAFW
NSDAFQALAQLRRTGSSLNAILVDKLPDA
>gi|99080918|ref|YP_613072.1| branched-chain alpha-keto acid dehydrogenase subunit E2 [Ruegeria sp. TM1040]
MPTEILMPALSPTMEEGTLAKWLVKEGDTVSSGDLIAEIETDKATMEFEAVDEGVVGKILIAEGSEGVKV
NTPIAVLLEDGESADDIDTSAATPEAAPAADAAAEEAPAAAEKAAAPAAATPAPAAPAAADGSRIFASPL
ARRIAADKGLDLSAIKGSGPRGRIIKVDVENATAAPKADAQTDAQAAAAPAASASPAPVAAPAGPSADQV
AKMYEGRSFEEVKLDGMRKTIAARLTEAKQTIPHFYLRRDIQLDALLKFRAQLNKQLEGRGVKLSVNDFI
IKAVALALQSVPDANAVWAGDRVLKMKASDVAVAVAIDGGLFTPVLQDADMKSLSALSSEMKDLATRARD
RKLAPHEYQGGSFAISNLGMFGIDNFDAIVNPPHAGILAVGSGVKKPVVGADGELTVATVMSVTMSVDHR
VIDGALGADLLKAIVDNLENPMVMLA
>gi|99080919|ref|YP_613073.1| pyruvate dehydrogenase subunit beta [Ruegeria sp. TM1040]
MATEILMPALSPTMEEGTLAKWLVKEGDTVNSGDILAEIETDKATMEFEAVDEGIVGKILIDEGSEGVKV
NTPIAILVEEGESVEDAVSSAAAPAAEAPAAEAAAPAPVAAAAATPAAPEVDESPDYPEGTEMVSQTVRE
ALRDAMAEEMRSSEDVFVMGEEVAEYEGAYKITQGLLDEFGSKRVIDTPITEHGFAGIATGAAFGGLRPV
VEFMTFNFAMQAIDHIINSAAKTLYMSGGQMGAPMVFRGPNGAAARVAAQHSQDYAAWYMQIPGLKVAMP
YSAADAKGLLKSAIRDPNPVIFLENEILYGKSFEVPKLDDYTVPFGKAKIWRKGDDVTIVSFGIGMTYAL
DAADKLAEDGINAEVIDLRTLRPMDLPTVIKSVMKTNRLVTVEEGWPQGSVGSYIASEVMQQAFDYLDAP
VAVCTGKDVPMPYAANLEKHALITTDEVIEAVKQVTYR
>gi|99080920|ref|YP_613074.1| pyruvate dehydrogenase (lipoamide) [Ruegeria sp. TM1040]
MAARKSAQKSNVSAEELTKYYREMLLIRRFEEKAGQLYGMGLIGGFCHLYIGQEAVVVGLEAAAEEGDKR
VTSYRDHGHMLACGMDAGGVMAELTGREGGYSKGKGGSMHMFSKEKHFYGGHGIVGAQVPLGAGLAFSDK
YKGNDRVTFTYFGDGAANQGQVYETYNMAQLWDLPVIFVIENNQYAMGTSVQRSTKSPALWKRGEAYGIK
GEEVDGMNVLAVKEAGERAVAHCRAGKGPYILEVKTYRYRGHSMSDPAKYRTREEVQKMREERDPIEQVR
EMLLTGKHASEEDLKAIDKEIKDIVNKSADFAKESPEPALEELWTDIYADDIPQKSA
>gi|99080921|ref|YP_613075.1| hypothetical protein TM1040_1080 [Ruegeria sp. TM1040]
MSHRGDVAQIRCAAPGLDFVRATRHPAAVVTAVPSHSKRRSLGPEDCQMWGLFWCKKQQIQAGFQLLRDY
PSHAGAKYTMR
>gi|99080922|ref|YP_613076.1| septum formation initiator [Ruegeria sp. TM1040]
MTRKSTPSLGTLLFFAAAFLLSAYFTFAAVQGDFGLFRRVELQAEADGLAKDLERLEVEIARMENLTRRL
SDDYLDLDLLDEQARSVLGMARADEIIID
>gi|99080923|ref|YP_613077.1| hypothetical protein TM1040_1082 [Ruegeria sp. TM1040]
MSYSLPRRSIVTHRTPPAKVERADAKHMLCLNTETCWGDVSSMGNLLFICGKGRKRSPTAATIAAEQLGQ
PTDFAGLSADSDERVSRDHLLWADTIAVMEKSQLSRLKRHMGSHLKGKRIVCLDIPDTCECMQPELVEIV
RSRLKRIVR
>gi|99080924|ref|YP_613078.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MTNLSLRKQIFGFAGIFIAMILIIAAISWFANQRLAGATYHYRAVSTQSKSFDAIKEDIEQGIGDLLSYT
VGMPEGLSDLRANIEEIRSELAVAEDNFKSTPIIAARDMQAYDALVSTEPLLDQLEATLQEVERTEGEAQ
LRVVFDKVFPLAGQVRDVVDALQDKLAATSKSVRAEVDSLILFCQIIQIATSVAAALVAVTVAFVFGRKL
SQPVSDAAQSIAALAKKDYVAEISGTQRGDELGQIARNLKDLRTQLAEADAHDRQNAAENARRVELFGVL
GASMSGLKSGDLDQNIVAQDWEDLGPGYATLCEDFNALSSSLSDLVAQLNQSSTVVEQNAREMERMSDQM
SQRSETQAATLEESAAALEEMSTAVQSSAAQAKAADREVEEGRRRAEQGGEVMAQASRAMASIAEYSNRI
SQIITAIDDIAFQTSLLALNAGVEAARAGEAGRGFAVVASEVRGLAMKAAHSASEIKQLVQESSSQVEEG
EQLVQATAETLTQIVESVTNVSGMVSAIASSSSEQAAGIQEINIGVAQLDKATQENAAMVQETYSASHEM
RTQASRLTNLLEGFTGGQASSSTAAPARAA
>gi|99080925|ref|YP_613079.1| phosphoglycerate kinase [Ruegeria sp. TM1040]
MGWKTLDDMDLQGKSVLTRVDINVPMEDGKVTDDTRIRRLVPTISDLLSKGAKPVLLAHFGRPKGKVVPE
MSLQPLVPALEAAFGAPVMFVADCRGPAAKGAVDALAPGQILLLENTRFYPGEEQNDADLAKEMAALGDI
YCNDAFSAAHRAHASTEALARLLPACAGRLMEAELKALEGSLATPERPVTAVVGGAKVSTKLDLLGNLVA
KVDTLVIGGGMANTFLAAQGIDVGKSLCEHDMTGTAKDIMARAEAAGCTILLPSDVVVAREFKAGADNET
VPADACPADAMILDAGPASVAAISTVFAESKTLIWNGPLGAFEIAPFDIATNTAAQKAAELTKAGQLISV
AGGGDTVAALNQAGAAEAFSYISTAGGAFLEWMEGKVLPGVAALQT
>gi|99080926|ref|YP_613080.1| peptidyl-prolyl cis-trans isomerase, cyclophilin type [Ruegeria sp. TM1040]
MAEIKDPENTIIIELKDGNVVIELLPDVAPMHCDRMKELAREGQYDNVAFHRVIDGFMAQTGDVQHGDME
DGFNLGRAGTGGSDKKDLPAEFSGVPHDRGTLGAARSQNPNSANSQFFINFKDNHFLNRQYTVYGRVIEG
MEHVDAITRGEPPAKPDRMISVKVAADA
>gi|99080927|ref|YP_613081.1| peptidyl-prolyl cis-trans isomerase, cyclophilin type [Ruegeria sp. TM1040]
MLKRLSALALLAASPAFATGLEIQVEGEANGTIVIDLLEDVAPNHVEQIAALAAEGQYDGVVFHRVIQGF
MAQTGDVQNGRLGSDMRYAGTGGSDRPDLAAEFSDVPFDRGVVGMARSQDPDSANSQFFIMFDEGHFLNG
QYTVVGRVTEGMEIVDQIKRGHPRSGAITGRPDVMSKVTVTE
>gi|99080928|ref|YP_613082.1| hemolysin-type calcium-binding region [Ruegeria sp. TM1040]
MAGDDDFVSDLNVDLNLNLSSGNDVAELGSGDDFVFAGTGNDRVLSGGGNDIVNGYSGHDRLLGGAGQDR
IHGQTGRDILIGGSGNDDLNGGIGRDILKGGSGHDTLIAGCGTDRLTGNTGDDTFVFKHRDGANVIRDFG
NGNDVIEIQHGARGMRGLTFSQDGDDVRIAYAQTTIIVRDWEVEDLQSEDFFLFT
>gi|99080929|ref|YP_613083.1| hypothetical protein TM1040_1088 [Ruegeria sp. TM1040]
MFSKSKINEPGPKQADTATATPASSPAPSSSSASSGASDYSKPAAPKAKPPASLLSSDLHITGNVKTTGD
IQVEGTVEGDIRAHLLTIGESATIKGEITADDVVINGRIVGRVRGLKVRLTSTARVEGDIIHKTIAIESG
AHFEGSVQRQDDPLSPGKAASKAPAAAAPAKVD
>gi|99080930|ref|YP_613084.1| peptidase M23B [Ruegeria sp. TM1040]
MRGRLFLRFHAFLERRFPERRVFLKSDSDTRFIRLSSETQIVAVAGLTLFVSWSIVATAIVLMDSIGSGN
FRDQARRDQQVYQERLNALSSERDRRAEEALAAQDRFNAALEQISTMQSELLASETRRRELETGIDVIQS
NLRKAISERELLKRTVLELREKTAPDSPEQVLAATAPEQLEFLTTALAETAAERDKIESNAQSALAQRDD
LELELRLSAQRNDQIFRQLEEAMAISVEPLNKMFSSAGLPPDRILEQVRRGYNGEGGPLEPLSLSTRGEE
PSPDEIRANALLNQMSQLNLYRIAAAQAPFSVPVNLGQVRQTSGFGYRRDPKTGGRRLHKGSDFAGSTGT
DIFATADGVVTHAGWQSGYGRLVKIQHAFGIETRYAHNSNLRVKVGQRVSRGDHIADMGNTGRSTGTHLH
YEVRVNGKPVNPMIYIKAARNVF
>gi|99080931|ref|YP_613085.1| hypothetical protein TM1040_1090 [Ruegeria sp. TM1040]
MTQSPLSLAQMATNVLNCADGREKTALSHNYAAAWRAARSGDGPEIDIGHATPPLHPARPAEPALLHPRD
VPKRKPGSPQGRIALLHAVAHIELNAVDLHWDIIARFTHIPMPLGFYDDWVKSADEESKHFNLMCDCLES
LGSHYGALPAHAGMWRAAEDTVDDLMGRLAVVPMVLEARGLDVTPGMIALFRKAGVQQALDALEIIYAEE
VGHVAYGAKWFNFLCGRDNLDPKAEFHALVQKYFHGALKPPFNEEKRADAGLPPDFYWPLADGEAPAYAR
>gi|99080932|ref|YP_613086.1| redoxin [Ruegeria sp. TM1040]
MLEPSDLAPAFTLPRDGGGEVSLSDLKGQVVVLFFYPRDDTPGCTKESIGFSEHLQAFADAGAAVYGISR
DTVAKHDKFVAKHGLTVPLLSDAESTMCEDYGVWVEKNMYGRKSMGIERSTFVIDRDGKIARIWRKVKVP
GHVEEVLEAVKEL
>gi|99080933|ref|YP_613087.1| hypothetical protein TM1040_1092 [Ruegeria sp. TM1040]
MSDKGKPYIVAAPPEPASEAGGNRVQETGAGASDMGQNTAQPRRNRWRRRLWKSTVWTLALLAGLTVAAW
VLLDKRLDAPEWLRSEAERRIERHLGGLQIEFGEIELVVRRGWRPRLSLRDVTLFYPDGSPAVHLEDAQA
ALAMRPLLRGQLRPKLISLSGLFATLETGSDGAVALSFSDGAAPLRQARNLPQLIEAWDRQLELPILSAV
TQVETQAVTLNYIDRRIDRAWTLDGGAVLLSRKGDRVSIDAGFSVLSGREYASTVEANYQSDIGDTAAEF
AVVVDQVPSSDIASQSPAFGWLDVLRAPISGALRGAVDSEGALRPLNASLQVGRGVIQPNDQLKPIPLQS
AESYFTFDPARQELAFSRLSVESGWISGQMEGRAELVGVRDGRLTQLVGQLSFSDLKLNPLRLYPEPLAF
SGVQADFLMELQPFRLRLGEALVQQGETDVLLRGDVRAGETGWHYDLQGAADRLDVAVVKEMWPPSAPPK
PRAWFTENVLAGDIHDVQFALRGRDGQKPFVALDLGFLNGEVRFNKFYPPLTQAAGQLSIYGRRLVVTAT
EGGVDADLGGRMDVAGTSFIIPDTSLKGDNSLGILRAELAGPALAALSLLDREPLSILSKVNLPVALGTG
EVDLSATAAMPLKKGVNVAEIDYHYAGQIKQARSEVLVPGYPIESEALQISGDNHHVTVAGPGLFAGVPI
EARWRQGIRPGNAPDGTIEAEIELSPRTLAALNIGLPEGMVRGQGQAQVEVVLPPGEPVALSVQSDLRGI
GLSLPEVGWRKAENSSGTLSFETVLRDTPSIESFTLEANGLRAAGRITVKPDGGLDQAQFSAVSLGNWLS
GAVTLRGRGDATPALSMTGGWIDLERAPFDSRAEGGSGGGGSNTPISLAIDRLQVTKELALTRFQGRFDT
LGGFNGAFSGNLNTLTPVEGVVVPQSGGLAMRLRSADAGGVFRAAQVMQNGYGGSFEMTMLPASDPGEYV
GQLRVKNIRVKRTPAIAALINALSLVGLFDELSGQGILFTAMEADFRLGSRYLTLVKSSAVGPSMGISLD
GVYDLSTSQMNMRGVLSPIYLVNAIGSVLTRKGEGLFGFSFTLKGKAEDPVVSVNPLSGIAPGFLREIFR
GEAPRAPGAAPLPEDEQNQTAEELREERERRREAR
>gi|99080934|ref|YP_613088.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Ruegeria sp. TM1040]
MKLGDFDFDLPEELIATRPAVPRSSARLLVAEQDRISDGRVTDLLDWLAPGDRLVLNDTRVIPARLSGQR
HRNSAQGPVSARIEVTLLEPQADGSWAGLLKPLKKIKIGETLRFSDALSAELVDVVDGQGRLRFNLAGDD
FDAALAEAGAMPLPPYIAAKRPADEQDKTDYQTVWARNSGAVAAPTASLHFDEPLLKALSEKGVTFTYVT
LHVGAGTFLPVKVEDVTTHKMHAEWGQVTPEAAAEIAATKAAGNRVIPVGTTALRLIESAARESGAITPW
EGETDIFIYPGFEFRVADALMTNFHLPKSTLMMLVSALMGQDRIRAIYAHAVKERYRFFSYGDASLLIP
>gi|99080935|ref|YP_613089.1| major facilitator transporter [Ruegeria sp. TM1040]
MLQVLSSAWALLLGIGLLMLGNGLQGTLLGVRGGIEGYSALTMSLVMSTYFVGLLLGSWVAPGMIRRVGH
VRVFAALASLISAVMVIYPALPNPIVWMLGRLVVGFCFSGVYVTAESWLNNAADNQNRGKALSLYMVVMT
LGLVAAQGFILIGDPAGYLPFVIASIAVSISFAPILLSISPTPAFDTAKRMTLRELMHASPLGCVGMFLI
GGVFSAQFGMSAVYATEAGMELHQVSLFAASFYVGALFMQFPLGLLSDRMDRRVLIMIVAGVAGVTSVLA
MLLGGTFSLLLLAAFVIGGLINPLYSLLLAHTNDFLDHDDMASASGGLIFINGLGACSGPVIIGWLMSDA
MFGPNGFFLFMAILLGVLVLYAGYRATQRATIPVEETGVMPAMSPTATSVAVEVAQEYAIETELEEQDSA
TTTG
>gi|99080936|ref|YP_613090.1| hypothetical protein TM1040_1095 [Ruegeria sp. TM1040]
MAAPEEILKFWLDEVGESGWYRQDDALDAEIRKRFEQAWINACEGSYSLWLTYPSGTLAYIILTDQFPRN
MFRGQGKAFESDHIALAVAKAAVDRKWDLKINEPARQFFYLPMMHSESLCDQERCVRLIHERLDKTGAQN
LLHARAHREVIRLFGRFPYRNDALARHSTAPERDYVSAGGYGSTVRELQAYA
>gi|99080937|ref|YP_613091.1| dihydrolipoamide dehydrogenase [Ruegeria sp. TM1040]
MAAASYDVIVIGAGPGGYVAAIRASQLGLKTCVVEREHLGGICLNWGCIPTKALLRSSEVFHLMERAKDF
GLKAENIGYDLGAVVKRSRGVAKQLSSGVKGLLKKHKIDVIMGEATLPAKGKVAVKTDKGSEELTGKNII
LATGARARELPGLEADGDLVWTYKHALDPKRMPKKLLVIGSGAIGIEFASFYNTLGADTTVVEVMERVLP
VEDEEISKFAKKAFEKQGMKIMQKAMVKQLDRASGKVTAHIEVGGKVEKHEFDTVISAVGIVGNVEGLGL
EGLGVKIDRTHVITDEYCRTGVDGLYAIGDIAGAPWLAHKASHEGVMVAELIAGKHAHPVKPESIAGCTY
CHPQVASVGYTEAKAKELGYKVKVGRFPFIGNGKAIALGEPEGLIKTVFDEKTGELLGAHMIGAEVTELI
QGYVVGRQLETTEEDLMNTVFPHPTLSEMMHESVLDAFDRVIHI
>gi|99080938|ref|YP_613092.1| major facilitator transporter [Ruegeria sp. TM1040]
MQQQGQGTNWVMVLLIWAAGLGAAAQYGKIAVIFDQLPALYPGVGAAMGWTVSLVGVLGIIFGVVAGLYV
SAIGFRRTLVLSLVLGAGVSGLQALHLPFGLFLITRMVEGISHLGVVVAAPTLMAILARGPARGVALTIW
STFFGVAFALLTWFGLPLVEARGIPALFAVHAGMMGLLALILHWGLRDLPVPPRASYPDLRALPSLHLNI
YRSPHKLAPAAGWLFYTCCFVAVLTVLPPYIAESQRAHVMGAMPLVSIVVSLTLGAGLLRVTSGVKVVQL
GFLIGTVAMLWLWAMPGYWLACMVLAAGFGLVQGASFASVPQLNDTPSTQSEANGAMAQAGNMGNAIGTP
LFVAVLTYGGYGSLVLTVALLLLAGAVVHQALALHRQRVARGAV
>gi|99080939|ref|YP_613093.1| excinuclease ABC subunit A [Ruegeria sp. TM1040]
MAELKNIEVRGAREHNLKNIDVDIPRDELVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLDM
MEKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARAGTPYSPATGQPIEAQQVQDMVD
RIMTLEEGTRGYLLAPIVRDRKGEYKKEMLELRKQGFQRVKVDGEFHDLDTPPTLDKKFRHDIDVVVDRL
VVKEGIETRLADSLRTALDLADGIAILETAPREGDPERITFSENFACPVSGFTIPEIEPRLFSFNAPFGA
CPHCDGLGVELFFDERLVVPDQSLKVYDGALAPWRKGKSPYFLQTIEAIANHYEFDKNTPWKDLPAHVKQ
VFLHGSGDEEIAFRYDEGGRVYNVTRVFEGVIPNMERRYRETDSNWVREEFERYQNNRDCGHCGGYRLRE
EALAVKIGPAGGPAEHRLHVGQVVEKSIREALAWIEEVPSHLSPQKQEIARAIVKEIRERLGFLNNVGLE
YLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLITTLKNLRDQGNTVIVVEH
DEDMIRQADYVFDIGPGAGVHGGQVVSHGTPATVEGDAGSVTGQYLAGTREIAVPDTRRKGNKKKIKVVK
ASGNNLKDVTAEFPLGKFVCVTGVSGGGKSTLTIETLFKTASMRLNGARQTPAPCETIKGLEHLDKVIDI
DQRPIGRTPRSNPATYTGAFTPIRDWFAGLPEAKARGYKPGRFSFNVKGGRCEACQGDGVLKVEMHFLPD
VYVTCETCQGARYNRETLEIKFKGKSIADVLDMTVEDAQEFFAAVPTIRDKMDALMRVGLGYIKVGQQAT
TLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGNSVVVIEHNLDVIKTA
DWLIDIGPEGGDGGGEIVAVGTPEKVAEEPRSHTGRYLKPMLEAQARKKVAAE
>gi|99080940|ref|YP_613094.1| hypothetical protein TM1040_1099 [Ruegeria sp. TM1040]
MMTVDFAARLLRVTAAGTALLGMMLVLAPHSPLGPAGLFFVDLAFLPLDQAQQINDEVAQLMMAISGGLL
CGLGVLIWQIATHVLPSDPKRARQLLIPALLTWYLPDSLGSALSGASFNVVMNTAFLALLLAPLLLLKPA
SGQKLSPQG
>gi|99080941|ref|YP_613095.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MSAFGTQLKDWRQLRRMSQLDLALSAEVSARHLSFLETGRARPSRDMVLRLSRELLLPQTEINALLTAAG
FAPAYGARDLEDAELAPVRAAVMWMLERHAPYPAMALDRHWQLEAANAPARMLLQPVGIDLGDSLLEALL
HNSGLRSNILNLREVEQLTLQRLRSELAHFGRDSVIEAHVEDLRARGAGQVPEAGPLPAMIPTRYQIGAQ
VLSFFSAMSQFGTVEDIALSELRIECMFPADEATRVALIQMGAS
>gi|99080942|ref|YP_613096.1| 3-hydroxyisobutyrate dehydrogenase [Ruegeria sp. TM1040]
MQIGFIGLGNMGGPMAANLAKAGHSVTGFDMADVSIEGVSLAKSAAEAATGADVVITMLPNGDILRHVAS
EIIPAMTNGAAFVDCSTVDVDSARAVAQQAAEAGLLAVDAPVSGGIGGAAGGTLTFMAGGSEEAFAKAAP
LFDIMGQKAVHCGDSGAGQAAKICNNMILGVTMIATCEAFALADKLGLDRQKMFDVVSTSSGYSWTMNAY
CPAPGVGPQSPADNDYQPGFAADLMLKDLRLSQQAAGSADADTPMGKLAEALYSQFVDKEDGKGKDFSAM
LPRFEKRGRS
>gi|99080943|ref|YP_613097.1| enoyl-CoA hydratase/isomerase [Ruegeria sp. TM1040]
MSDIHIRIEGRAGRITLTREKALNALSYDMCLAIDAALKDWAKDDAVALVVFDAAGDKAFCAGGDIAELY
ETGTKGDFAYGRTFWRDEYRMNARIFEYPKPVVSFLQGFTMGGGVGIGCHGTHRVVGDSSKLSMPECGIG
LVPDVGGSLLLALAPGRLGEYLGTTGYRMDAGDAIYAGFADHYIPETTWPALIKTLEETGDVAALEAAAQ
PAPESKLQAMQGDIDATFAGETAADILTVLRGRKDSFAADTLKVLERGAPLSIATTVEMIHRLRSSTATM
RRALDLEYRFTYRAMDKGDLLEGVRALIIDKDKSPKWQYADGNVPAVAVSQMLQPLGAEALSFEEES
>gi|99080944|ref|YP_613098.1| acyl-CoA dehydrogenase-like [Ruegeria sp. TM1040]
MDFAMTEEQTAIFDMAYGFGQEHIAPFARQWESEGTIPKDLWPKVGELGFGSLYVSEESGGSGLLRLDAT
LVFEALSMACPSVAAFLSIHNMCAKMLDMFASDDLKARVMDDVMSLNTVLSYCLTEPGSGSDAAALKTRA
SRDNEGYVLNGTKAFISGGGYSDAYVCMVRTGEDGPKGISTLYVEDGTPGLSFGGLEDKMGWKSQPTAQV
QFDDCRVPAGNLVGQEGDGFKYAMKGLDGGRLNIAACSLGAAQAGLNATLQYMSERKAFGKSIDQFQGLQ
FRLADMEIELQAARTFLRQAAWKLDQGSPDATKFCAMAKKFVTETGSNVVDQCLQLHGGYGYLADYGIEK
LVRDLRVHQILEGTNEIMRVIVARHMLAENH
>gi|99080945|ref|YP_613099.1| TPR repeat-containing protein [Ruegeria sp. TM1040]
MSQPNQTPKLAVMQPTKKQFPEFEKFANSVKAQERAKFAYEMKNGLRSSRAKGEQTKDTVTKLLRKAQAL
ILKHENEKAEAVINQAIALEGQDARLHSLMGEVLMKDSNRMMDALGSLMRAVKLEPTNGSHYGMIGTLLM
RLQKFEEAIDYFEIAVKFDPKNHIALSRMMHTKAHRARWDDFNKIPTYLKQFKNQNVLSDPFAFLSLCDD
AAFQKQRSIAQINSKFCNPVKAPIFKGERAAGEKIRIGYFSNDFYNHATMHLMGGLLENHDRSKFEIYIY
DYGSKLRDHEHERARRSADVFRDIRTLNTAQIVDLAHGDALDIAVDLKGFTENGRLDMFNSRVAPVQVAY
LGYPGTTGLKSMDYMVADKITIPSHLRKHYTENILYMPNCYQPNDESRFIAEVADTRASHDLPEEGFVFS
SFNNPYKVTPREFGIWMDLLKEVPDSVLWFYVSKAEIIDRLRKEAESRGVDGARIIPTGRMQPEYHLARL
KHADLFLDTFNVNAHTTASDALWAGLPVVTKTGEQFAARVAGSILSAAGLEDLVTHSEKKYYEVALRIAQ
DPDYLADIRKRLAASHENSPLFDTKSYTRDFERLMERAFQNYIDGNAPRSLGISAA
>gi|99080946|ref|YP_613100.1| ErfK/YbiS/YcfS/YnhG [Ruegeria sp. TM1040]
MSDFTKSRLSLTRRSLMAGAAATLATPGLLRAQSTDAFPASEPAIREQIPVQRNVSSFQQQRWQDHFETL
GVGCLLADIESRALHYWGGDGETYLLFPSSVPMSEELTRRGYSKIVRKRENPSWTPTANMRERDPSLPQR
IEGGEPNNPLGTRALYLDWPAYLVHGTHDTRKIGRQSSSGCIGLYNQHVEKLYPLVKVGTQVRLL
>gi|99080947|ref|YP_613101.1| methylmalonate-semialdehyde dehydrogenase [acylating] [Ruegeria sp. TM1040]
MQELTHYVNGEKVAGTSGRFADVLNPATGEVQAKVPLATKAEMDAIIAKAAEAQVEWAATNPQKRARVMM
KFGQLINEHMDTLAELVAREHGKTLPDARGDVQRGLEVVEVCMGTPSLLKGEFTDSGGPGIDLYSMRQPL
GVVAGITPFNFPAMIPLWKMAPALSCGNAMILKPSERVPSTSLYLAELLKEAGLPDGVLQVVNGDKEAVD
AILDNETIQAVGFVGSTPIAQYIYGRAATNGKRAQCFGGAKNHMLIMPDADLDKAADALVGAGFGAAGER
CMAISVAVPVGKETADGLIERLVPRIEKLKVGPYTAGEDIDYGPVITPQAKARIEGLIDSGVEQGATLVT
DGRGLTLQGYENGYFVGPTLFDNVTAEMDIYKEEIFGPVLSTVRMDNYEDALNLVKDNAYGNGTAIYTAD
GDTARDFANRVNVGMVGINFPIPVPLSYHTFGGWKKSAFGDLNQYGPDAFRFYTRTKTVTQRWFSGIKEG
GEFNFKAMD
>gi|99080948|ref|YP_613102.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MEPQWDDMKVFLAVARESSLSGAGRVLKMDPATVGRRVARFEAALKTSLFVKSPQGYALSAAGDRLLGHA
EAAELAMRAGEEALTGPSDTLSGQIRIGAPDGCANYILPQVCAAISKDNPDLDIQVVALPRVINLSRREA
DMAVTVSAPTAGKLLVQKITDYHLHLAATRHYLRDNHPIEKLEHLRDHRMIGYIPDMIFDRELDYLNDLG
IERVSLASNSVSVQIKMLAEGSALGVVHDFSLPSHRTLRKVLKEEFSLTRSFYLVRHQGDQRSDRLNRFA
EALSAGIRAEVERLEGLT
>gi|99080949|ref|YP_613103.1| signal-transduction protein [Ruegeria sp. TM1040]
MLVKSILKSKDIAEVVTITPEATIEAAAQLLSEHGIGTVVVSPDKSKPVGILSERDIVRQLAKVGSVCLN
HKVEDYMTRDVVTCTQDSVAEQALSTMTEGRFRHMPVVEDGALVGIISLGDVVKAQLNEVAMEKTALEGM
IMGH
>gi|99080950|ref|YP_613104.1| phosphopantetheine adenylyltransferase [Ruegeria sp. TM1040]
MRIGLYPGTFDPITLGHIDIIRRATLLVDRLVIGVAINRDKGPLFDLEERVAMIEAECAKLTEQTGTEIV
VHPFENLLIDCARDVGAQVIVRGLRAVADFEYEFQMVGMNRALDDSIETVFLMAEARHQAIASKLVKEIS
RLGGDVSKFVTPLVRERLAERLGQR
>gi|99080951|ref|YP_613105.1| hypothetical protein TM1040_1110 [Ruegeria sp. TM1040]
MTNTIAIALGLFLITALTVDIVFFGTGHVLFLGKKLFELIEWLAFWR
>gi|99080952|ref|YP_613106.1| glyceraldehyde-3-phosphate dehydrogenase [Ruegeria sp. TM1040]
MTIKVGINGFGRIGRCTLAHIAGSFRNDIEVIKVNATGPIETAAHLIKYDSVHGRFPGQVDFSEGRLNLG
RGDMQVFSTYDMDTLDWEGCDVVLECTGKFNDGLKAKKHLERGAGKVLLSAPGKNVDRTVVYGVNDEDLL
STDKMVSNGSCTTNCLAPLAKVLDEAFGIEHGIMTTIHAYTGDQPTLDRRHDDLYRARAAAMSMIPTSTG
AAKALGEVLPNLKGRLDGSAIRVPTPNVSAVDLTFRAGREVTAEEVNAAVAEASKGHMSRVLGYEPAPLV
STDFNHTEESSIFAPDQTRVVDGRMVRVLAWYDNEWGFSVRMADVATAMGRLN
>gi|99080953|ref|YP_613107.1| hypothetical protein TM1040_1112 [Ruegeria sp. TM1040]
MSGLLALLDDVAGIAKVAAASVDDVATQSMKAGSKAAGIVIDDAAVTPKYVTGFHPARELPMIWRIARGS
FINKLVFLLPVALLMSQFAPWLIPPLLILGGCYLCFEGAEKIAHVVLPHDDHSGGPDGSHDIGDPAHLEE
QKVKGAIKTDFILSAEIMTISLSTIESDVLWIQAATLAVVGIMITIVVYGVVAVIVKMDDVGLWLTKVGR
TGVTRALGRGIVAFMPWFLKMLTVVGTAAMLWVGGSIIVHSAHQMGWHWPEDTIYSFAKSIAQGDGLVEW
LVKAVVDGLLGFVVGLLLIPLATKVIAPLFGTKAAH
>gi|99080954|ref|YP_613108.1| transketolase [Ruegeria sp. TM1040]
MDLTALRSENPDHWNKAAAIRALTLDAVAGANSGHSGMPIGMADVATVLFEKHMKFDVSAPKWADRDRFI
LSAGHGSMLIYSLLYLMGDAQVTLEQIKNFRQSGALTAGHPENFLLDAVEVTTGPLGQGISNAVGFAMAE
ESLRAQYGKKVVDHYTYVIAGDGCLMEGVSQEAIGLAGRHQLGKLVVFWDNNNITIDGTVDLSDRTNQVQ
RFKASGWHVQEIDGHNPAEIDAAIEAAKKTKKPSMIACKTHIALGHAAQDTSKGHGALTDADQLKAAKEA
YGWTGGAYEVPAEIKSQWEAIGQRGATARAEWEARFAEISKQKQDRFNRAFALEAPKKLSATVKALKKQI
SETKPKVATRKASEMALEVINPIMPETIGGSADLTGSNNTKTGDLGVFDTDNRKGRYVYWGIREHGMAAA
MNGMALHGGIRPYGGTFFCFTDYARPAMRLAALSKIPTVFVMTHDSIGVGEDGPTHQPVEHLAICRATPN
TYTFRPADAVETAEAWEIALTAKETPSVIALTRQGLPTVRTEHKLANLTEKGAYVLAEAESKRQVILMAS
GSEVSVAMAAKDILEGQGIGTRVVSVPCMELFHAQDEAYRRKVLPAGPVRVAIEAAVRDGGWDRLLLGER
GQEKKAGFVGMQGFGASAPAGELFEKFGITAEGTVAKVKELLG
>gi|99080955|ref|YP_613109.1| hypothetical protein TM1040_1114 [Ruegeria sp. TM1040]
MEQLEELQGRIQTALHRIYGGVAALEQKHANRPVPTLEELDMQKHAELLADLEDEKMANAQLIERLRLLH
GRLEDMEKKVAAVDGAQDLIALHAELELLRNEAGNSVETEALKAEVARLKQDLEAARNQAASEREKLEDD
LSEATAQNEQLQAQLSALPESPADTEMTSDVKGDAHADSAELEALRAEVAELRARAEAAESAAVSQDVEP
ADEGVSAELDLRLSALDGELQGLRASNDQLRQSNAALRAANAEGVADPALINSGLEAELEGLKAARATDQ
AEVNAVLARLEPLLATAPNLPEGEEA
>gi|99080956|ref|YP_613110.1| hypothetical protein TM1040_1115 [Ruegeria sp. TM1040]
MPEVTIHIGGRDFEVSCQEGEESFLHMAAGMLDDEAQVLSDQIGRMPEARMLLMAGLMLADKTAAVEDRI
KEVEAKLAEKDALLEERDAELEELRNAPPPPAEQIEVPVVPPQVAETLAELAARAEALAGEIEEKAAPDD
DEDDDEAATTPAVDPSADAMAAEGNADEAREETPDDVKEQV
>gi|99080957|ref|YP_613111.1| glutaredoxin-like protein [Ruegeria sp. TM1040]
MTDAKTRIDETVKANDVVLYMKGTKDMPQCGFSSRVAGVLNYIGVDYTDVNVLADEDIRQGIKDYSDWPT
IPQLYIKGEFVGGCDIITEMTLSGELDGMFEQNGISFDKDAADKIREANA
>gi|99080958|ref|YP_613112.1| BolA-like protein [Ruegeria sp. TM1040]
MPMQAHEIEALLRETFPDAQIQVGGSDGVHMSAMVIDESFRGKNRVQQQRAVYAALKGKMDGPSGELHAL
ALTTKAPE
>gi|99080959|ref|YP_613113.1| phosphoribosylformylglycinamidine synthase II [Ruegeria sp. TM1040]
MQEPAITPEVIENHGLKPDEYDLILEIIGREPTFTELGIFSAMWNEHCSYKSSKKWLRTLPTSGPQVICG
PGENAGIVDIGDGDAVVFKMESHNHPSYIEPYQGAATGVGGILRDVFTMGARPIASMNSLSFGEPAHHKT
RQLVNGVVEGVGGYGNCFGVPCVGGEVRFHPAYNGNCLVNAFAAGLVKTDMIFYSAASGVGMPVVYLGAK
TGRDGVGGATMASAEFDDTIEEKRPTVQVGDPFTEKRLMEATLELMQTGAVISIQDMGAAGLTCSAVEMG
DKGGLGVRLDLEKVPQREENMTAYEMMLSESQERMLMVLKPELEAEAKAVFEKWDLDFAIVGETIAEDRF
LIMHNGEVKADLPLSKLSSSAPEYDRPWIEVEAPAALTDADVPTIDPIDGLKALISSPNYAGKQWVYEQY
DTTVMGDTARRPGLGGGMVRVHGTDKKLAFTSDVTPRYVKANPVEGGKQAVAEAYRNLCAVGAKPLATTD
NLNFGNPEKPEIMGQFVGALKGIGEAVSALDMPIVSGNVSLYNETDGQAILPTPTIGAVGLVAAGEEPIL
GEARDGHVLLLVGETIGHLGQSALLHEVFNREDGDAPAVDLEIEKRNGEFIRNNRDFIKACTDISDGGLA
LAAFELAEAAGVGVQIDASDTPTLFGEDQARYLVACNFDQAEALMIAAGQAGVPLETVGKFTGDTVKMGG
SEATLEELSQIFRTSFAEAVA
>gi|99080960|ref|YP_613114.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MDWDKLRIFHAVADAGSLTHAGEHLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQGELLFDATKT
MSKRLETASARIRDSEEGVFGELRVTTTTGFGTLWLAPRLIKLYEQYPNLKVDLMLEERVLDLPMREADV
AIRMKEPSQADLIRKRLMTVQMRLYASRGYIDKFGWPETIEEIRDHRLICQSLRSAQVGSAAVMVQKLMT
HNPKSMLTVNNYFGVLQGVLQDLGIGVLPDYVTEDFPDLVQVLPNEDTNGVPVYLAYPEELRHSQRVSAF
RDFVQNEIIAHRKHMKELGKI
>gi|99080961|ref|YP_613115.1| indolepyruvate ferredoxin oxidoreductase [Ruegeria sp. TM1040]
MSTQKISLNDRYDLEKSPILLNGTQALVRLMLMQKARDVAAGLNTAGLVTGYRGSPLGAVDMQMKRAEKL
LTQSDVTFQYGLNEDLAVTALWGAQQAEIRGEGKYDGVFGLWYGKGPGVDRSGDALRHANMAGSSKHGGV
LVAMGDDHTGESSTVLHQSEWSLLDCYLPIVSPAGVQEILDYGIYGYALSRFSGLWVGLKTMKDTIEVTS
VVDGDPNRIQLVTPEMDLPADGLNIRLDDDRFRQEDRIIDHKRFAAEAFSHANKMDKRVWGKPGAKIGFV
AAGKNWLDLVHALSLLNIDENMAERLGITTYKVGQTWPMDMKGFNAWAEGLDLIVVVEEKRKLIEIQIKE
ALFDNRRGRRVYGWYKGGAGTMHREELFPTKYALDPIMIAEKLGNILIEEGRDTEAIRAGLADLDEARRA
DNAEEIASRLPYFCSGCPHNSSTKLPDGARAYAGIGCHFMVQWMDRETVGFTHMGGEGANWIGEAPFSNR
NHVFQNLGDGTYNHSGVMAIRAALAEGTNITYKILYNDAVAMTGGQQAEGGLTAHQIAHELRAMGVKTIA
VVYDEKEDVDAKLFPSGMRMHERAELMQVQREFEQIEGVSAIIYVQTCAAEKRRRRKKGLFPDPDQRIFI
NSDVCEGCGDCGVQSNCVSIVPKETELGRKRAIDQSSCNKDFSCVNGFCPSFLSIEGAKIKKSATASLDL
PDLPEPQLPEIDGTHNVVITGVGGTGVVTIGAVLAQAAQIDGKGAGMMEMAGLAQKGGAVHIHCRLANRP
EDISAIRVATGEAHALIGGDLVVSAGAKTLGLTSTGRTGAVVNSHEIITGDFTRNTDFSLPSDRLQVALQ
ARIRDRLDLFDASELARVSMGDSIFSNMMVFGAAWQRGLIPVRFEAIKQAIELNGAAVEKNLRAFDIGRW
AVLYPDEAAKLLTPNVVELPKSLDEKIAYRRDHLIAYQGKRLAKRYDKLLSGISDARLKEAVAKGYHKLL
SYKDEYEVARLLLSSREKAEEAFEGDLKISYNLAPPLLGGKDANGRPKKRKFGPRTERLFRVLAKLKSLR
GTPLDIFGYTAERKMERALIKQYEADMKAWLPKAGSVDPGALVALAELPLQIRGFGPVKMKNEQAAAKRR
EELLVALKQGATPVKTAAE
>gi|99080962|ref|YP_613116.1| phospholipid/glycerol acyltransferase [Ruegeria sp. TM1040]
MLERRHIARDISYSHSAETRPGRIMIRLMENTTGRLRLIKRAKGYDMEVASGRSFWDVIVERYGLSLDVV
GGSLDAIPRDKPVILIANHPYGILDGLMMGHILSRTRCDFRMLAHQVFRKAEDLNKVILPIDFAETKEAM
KVNLQTRKDALDYLGQGGAIGIFPGGTVSTASKPFAHPMDPGWRGFTARMVAKSDAVVVPLYFDGHTSRL
FQIASHLHYTLRMGLLIKEFKKRVDTPVKVVIGEPIGRDVLDPLAKDSKAMMDFLRKATYELSPTPLKSY
DYGFEFEEKHRA
>gi|99080963|ref|YP_613117.1| glutamate racemase [Ruegeria sp. TM1040]
MAVGIFDSGLGGLTVLDAAQKRLPDVDFLYYGDNSHAPYGVRDAEDIYELTHKAVHDMWDRGCNLVILAC
NTASAAALRRMQEAGVPEGKRVLGVFVPLIEALTERQWGDNSPPREVAVKHVALFATPATVASRAFQREL
AFRAIGVDVEAQACGGVVDAIEEGDMILAEALVKSHVDALLRKMPRPEAAILGCTHYPLMEDVFQKALGP
DVQVFSQGRLVADSLAHYLERRPEMIGGGNAGYVTTGNANRVSSRATQFLRREITFEAA
>gi|99080964|ref|YP_613118.1| N-acetyl-gamma-glutamyl-phosphate reductase [Ruegeria sp. TM1040]
MTHNVAILGASGYTGAELIRLISQHPSITIKALAAERKAGMEMADVFPHLRHLSLPTLCKIDEIDFAQID
LCFCALPHKTSQEVIAKLPGDLKIVDLSADFRLRDPEAYEKWYGNPHAALEQQQEAVYGLTEFYRDEIKG
ARLVAGTGCNAATGQFALRPLIAAGVIDLDEIILDMKCAVSGAGRALKENLLHAELSEGYNAYAIGGTHR
HIGEFDQEFSAIAGRPVKVQFTPHLLPVNRGILATTYVKGDAQAIYETFAKAYADEPFVELLPFGEAPST
HHVRGSNFVHIGVTADRIAGRAIVIVALDNLTKGSSGQALQNANLMLGEDETAGLMMAPLFP
>gi|99080965|ref|YP_613119.1| cytochrome c-type biogenesis protein CcmE [Ruegeria sp. TM1040]
MKSLKKQRRIQIIALATVALVGSTALIGYAMRDGINYFRSPSQVMETPPEPTETFRIGGLVEEGTLQRGQ
GEAVRFSVTDGGASVPVTYVGVLPDLFEENQGMVGTGRYVNGVFEASEILAKHDETYMPKEVVDALKEQG
VYREGDS
>gi|99080966|ref|YP_613120.1| hypothetical protein TM1040_1125 [Ruegeria sp. TM1040]
MDVVKIAQEIVAREGGYVNDPDDPGGATKHGVTIHTMRRLGLDLTGDERVDARDVQALSRKEAVEIFLRE
YYRRPRLHLLPAPLQPSVFDMHVNAGGNAVRILQELLCEMGYDLSVDGVIGPHTAKAAAAAGAVNMDALV
NAYGIARRNYYFQLAERRPQSRKYARTRAGKKGGWIRRAEEFIAPRYHLTVAEFHTRTAHWA
>gi|99080967|ref|YP_613121.1| hypothetical protein TM1040_1126 [Ruegeria sp. TM1040]
MFSMLWETFFGGRRNLVRETVEVFRENSEQSAVRAHDLQAAALAQFAAEFGGQKSGFDRFMDGLNRLPRP
MLALGTLGLMGAAMLDPVWFAARMQGIALVPEPLWWLLGIVVSFYFGARAQAKTQAFQEGIARSLARVPQ
AVENLQSLNALRQGTDHDEKSENSDNPALADWHRDRRG
>gi|99080968|ref|YP_613122.1| cytochrome c-type biogenesis protein CcmF [Ruegeria sp. TM1040]
MITELGHFALILAFMIAIVQTVVPLIGAHKRWPGWMAVAEPAAQAQFLFTAFSFGALTWAFVTSDFSLRL
VTLNSHSAKPMIYKISGTWGNHEGSMLLWVLIVTLFGALASVFGGGLPPTLKARVLSVQSAIGVAFFAFI
LFTSNPFLRLENPPFDGQDLNPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPW
TLAAWVFLTIGIALGSWWAYYELGWGGFWFWDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAI
LAFGFSLIGTFIVRSGLLTSVHAFANDPERGVVILGILAFFTGGALLLFALRAQAMEAKGVFSMVSRESA
LVANNLLLAVSCFVVFVGTLWPVVAEMAFDRKLSVGAPFFDAAFPPFMVALGLLLPIGSMLPWKRGKGAK
TLWTLRYGIVLALALAGLAWAIQTEKSLLGPVGVLLGAWVVSGAALDLLQRAGRKDRLSRLMRLPRADWG
KAVAHAGLGVTIFAVAGLTAWQKEDIRVANLNEPFRVGPFELVLSAVEEGRGPNYFTTMGVVDVTRNGKD
VATLRPEKRVYPVAQMPTTEAAIDYRFTRDLYVVLGDAQEGGGFTLRTYIKPFANWIWGGSLLMALGGFL
SLSDRRFRVAAGVRKAPTEGVPAE
>gi|99080969|ref|YP_613123.1| cytochrome C biogenesis protein [Ruegeria sp. TM1040]
MRPLFSVARILAACLAALVLSLSPALAVQPDEVLDDPVLEERARDLSDGLRCLVCRNESIDESNADLARD
LRLLVRERLVAGDSDEEAIDFIVDRYGEYVLLKPTTQGANWILWAAGPMMLALALLISFMYLRGRATATA
GPEADGLSAEEQERLREILKD
>gi|99080970|ref|YP_613124.1| hypothetical protein TM1040_1129 [Ruegeria sp. TM1040]
MSKDVIRLTIPDVSDFAKHLRRAFAQAPGHVEMLNHVARAAGYRNFQHLRQQNPPSPEIDHKRIARAARY
FDAQARWQSWPTKRGVRELCLWVIWARLPSRTYFSEREISAVIDEHCVFRDAAQIRRSLIEMGLLRRNRD
GSDYQRVETAMDPHGAALMSLLAERQKAQENP
>gi|99080971|ref|YP_613125.1| short chain enoyl-CoA hydratase / enoyl-CoA hydratase [Ruegeria sp. TM1040]
MDYRDIQYSLENGLATVTLNRPQSMNALTSQMRAEITHAMKTAAEEARAVVITGAGNAFCTGQDLKDASS
SGNQIDLERTLRDEYTPMLEAIYTCPVPTISAVNGPAAGAGANLALAADVVIATESAYFLQAFAKIGLMP
DAGGTWFMPRQMGLAKAMGAALFADKITARQASDWGMIWEAVADDGFEAHWRARAAHLASGPSKAFGAIK
QALRQSTTNSLPDQLSLEAHLQGELGRSRDFMEGVTAFVEKRKPDFEGR
>gi|99080972|ref|YP_613126.1| hemolysin-type calcium-binding region [Ruegeria sp. TM1040]
MLMLALIGSIAVIGAFVALDDDDDTEDTIPDNTETGTPGSDQLDGTDGRDLITLGDGDDSSFGGDGDDTI
HGDAGADVLGGQIGGDDLYGGDGNDNLYGGAGDDFLSGGADADILEGGGSDDRMTGGGGLDVLLGGNGED
TLNGSLGQDLLYGGNDDDVLNGGYGADGLHGGNGEDTVSGGDGDDVINGGELLVDTSLTSASALREAFLD
GENSPANLDFLFEDDKESDVLNGDAGSDLLVGGAGDVLNGGTGDDTFLVGDWLQAGEQVIIRDFDVEDEV
VLYRYSGAAPDLDYNTVVNSDGSSDIEVTVNGEVVAYLENAGDGFDLASNVALVSA
>gi|99080973|ref|YP_613127.1| citrate synthase [Ruegeria sp. TM1040]
MTDTQKTAQLSLNGETYELPIFSPTAGPDVLDIRKLYAQSGVFTYDPGFTSTASCDSTITYIDGNEGVLL
HRGYPIDQLAGKSHYLEVCYLLLYGELPTATQLEDFETRVTRHTMVHEQMHNFFRGFRRDAHPMATLVGV
VGAMSAFYHDSTDISDPWQREVAAIRLIAKLPTIAAMAYKYSIGQPFVYPRNDLDYAANFLHMCFSVPAE
NYTVDPILSRAMDRIFTLHADHEQNASTSTVRLASSSGANPFACIAAGIACLWGPAHGGANQACLEMLKE
IGSVDRIPEFIARAKDKNDPFRLMGFGHRVYKNTDPRAKVLKQSADEVLELLGVEDNPLLQVAKELEQTA
LNDPYFIEKKLFPNVDFYSGIILEAMGFPTSMFTPIFALSRTVGWISQWKEMIGDPQNKIGRPRQLYLGE
TQRDYVDIENR
>gi|99080974|ref|YP_613128.1| glutamyl-tRNA synthetase [Ruegeria sp. TM1040]
MSQPVVTRFAPSPTGFLHIGGARTALFNWLFARGRGGKFLLRIEDTDRARSTPEATAAILQGMAWLGLDH
DGEVVSQFEGAERHAEVAHQLLAEGKAYKCFSTQEEIAAFREAAKAEGKSTLFHSPWRDTPESEHPDAPF
AIRIKAPKDGETVIRDQVQGDVTIKNAQLDDMILLRSDGTPVYMLAVVVDDHDMGVTHVIRGDDHLMNAA
RQMMIYEAMGWDVPVYAHIPLIHGSDGKKLSKRHGALGAQEYQAMGYPAAGMRNYLARLGWSHGDDEFFT
DEQAKDWFDLDGIGKSPARFDTKKLENLCGQHIAIADDAALRQEIEAYLDAAGQPALNDVQSQGLERAMY
CLKDRAKTFPELLEKAHFVLTSRPLERDAKAEKALDPVSIGILNELTPHLQNASWSRDELEAALNEFAAA
KDTKFGKLAGPLRAVLAGRAVTPSVFDMMICLGREETLARLKDVTG
>gi|99080975|ref|YP_613129.1| ComEC/Rec2-related protein [Ruegeria sp. TM1040]
MFGALDARLQAQRGHLFPWVPVFFGLGIGLYFASPMEPQRLHYLGILFAAVGLGVRARRGDGVGLLAGAL
LLVGLGFCYMGLRAHQVGAPVLSYRYYGPVEGQVLAVDRSASDAMRITLGSVRLRDMSPARTPDRVRISL
FEGSAPMPGSWVMTTANLSPPQGPAEPGGFDFRRHAWFLGLGAVGYSRVPVLRTGPPEVLPVATLRAQLS
ERVRAAMPADTGGVATALMTGDRAHVPRQVTENLRASNLAHLLAISGLHMGLFAGVVFASLRRCFALCPP
IALRWPVKKLSAAVALVASFGYLLLSGANVATERAFLMVAVMLVAVMLDRRAISVRAVALAAMLVLLRRP
ESLLSAGFQMSFSATLALVVAFQLLQPWFRPGRGGVLGAAARWGLALLVSSLVAGLATAPFGAAHFNMIS
HYGLLANLAAVPVMGAVVVPGAVLAICLAPIGASAVGFWIMSQGIAWILKVAETVATWPGARGHVVAPEA
WILPVLVAGALWLLLWQGRFRWAGLIPIALALVVWPFSPRPEVLISADGGLVGVMTETGRALSRPSGKSF
VAGIWLENDGDGMDQARAYRRIPEGRDGKVQIFQSIGRRFVHVLGKTGLRAWQPSCARGEVIILSIEVEP
PAAGDCLWLTPRQLRETGSIAFAGNGAMITANGQARRLWSAP
>gi|99080976|ref|YP_613130.1| LexA repressor [Ruegeria sp. TM1040]
MLTKKQLQLLEFIHKRLQKDGVPPSFDEMKTALDLRSKSGIHRLITALEERGFIRRLAHRARAIEVIRLP
DSLGGGGALGAASDGFQPKVIAGGRGDSADGGAAAELKPVADTGATELTIMGRIAAGVPIEAINQAAAHV
AVPNAMLSSSGQHYALEVRGDSMIDAGINDGDVVVIRETDAADNGDIVVALVEGHEATLKRFERKGRMIE
LHAANPAYPTRSYTEDQVKVQGRLVGLIRTY
>gi|99080977|ref|YP_613131.1| MoeA-likedomain-containing protein [Ruegeria sp. TM1040]
MISVADARAALLDLVAPLTVETVPLAEAAGRVLAEPVSARRDQPPFAASAMDGYAVNADEVERHAMFKVI
GEAAAGHGFQGRVGAGQAVRIFTGAPVPEGASFVVIQEDVDRKGDLITITDAPGDNANIRDRGRDFRAGQ
TIDAPRLLRPADIALLAAMNIAEVPVRRRPVVALMSTGDELVMPGEIPGPDQIIVSNTFGLKAMFEEHGA
HVRVLPIARDTEASLQTAFGLAREADLIVTIGGASVGDHDLVAGVAESLGFERAFYKVAMRPGKPLMAGR
FGEESLVGLPGNPVSAMVCGRVFVVSMIEAMLGLPTKTTPLAQAPLAARLPANGPRQHYMRAIWRGADVQ
AFDSQDSSLLSVLAQAEALIVRPPNDPAREAGSLVEYLPL
>gi|99080978|ref|YP_613132.1| molybdenum cofactor biosynthesis protein C [Ruegeria sp. TM1040]
MSLTHFDQKGDAHMVDVSEKAVTARIAVAEGHIKMAQDTFDVISEGRAKKGDVLSVARLAGIMGAKKTAE
LIPLCHPLPITKVAVDLTLDPDLPGVRVEGTVKTTGQTGVEMEALTAVSTACLTVYDMAKAVDKAMEIGG
VRVLLKDGGKSGRYEA
>gi|99080979|ref|YP_613133.1| indole-3-glycerol-phosphate synthase [Ruegeria sp. TM1040]
MSETILDKIKAYKLEEVATDKAAKPLADVEAEARAADPVRGFAERLQKATHQGYGLIAEIKKASPSKGLI
REDFDPATLATAYAEGGASCLSVLTDTPSFQGAKDYLVAARAACDLPCLRKDFMYDTYQVAEARALGADC
ILIILASVSDAQAAELEACAFEWGMDVLLEVHNEEELDRACLLKSPLMGINNRNLKTFETTLDTTRTLSR
MVPPDRTIVCESGLFTPEDLADMAQYGARSFLIGESLMRQEDVTAATRAILANPLTPSL
>gi|99080980|ref|YP_613134.1| uracil-DNA glycosylase [Ruegeria sp. TM1040]
MAPQDHASALRPAVGGWAELPFFETHWPRIEAALAQETRQILPPAHQRFAALERTPPESTRVVILGQDPY
PTPGHAHGLSFSVEPDVTPLPRSLRNIYQEMRDDLGTCPETGDLRPWAAQGVLLLNTVLSVPAGEANGHK
SLGWQELAHQVLDLSSRRPTAYVLWGNQAQKLESHIRPGDHLIVKTAHPSPLSARRGFFGSRVFSAINDW
LTARGEPPITWADPRPAQGSIFDV
>gi|99080981|ref|YP_613135.1| anthranilate phosphoribosyltransferase [Ruegeria sp. TM1040]
MSDALKPLIGLAADRALTRTEAETAFAALFNGEATPSQMGGLLMALRTRGETVDEYAAAAAVMRAKCNKV
SAPADAMDIVGTGGDGKGTLNISTATAFVVAGAGVPVAKHGNRNLSSKSGAADALTEMGIQVMVGPKVVE
KSLKEAGICFMMAPMHHPAIAHVMPTRQELGTRTIFNILGPLTNPADVKRQLTGAFSRDLIRPMAETLKQ
LGSEVAWLVHGSDGTDELTITGVSWVAGLSEDGNISEFEVHPEEAGLPEHPFEAIVGGTPAENAAAFRAL
LEGTPSAYRDAVLLNSAAALKVAGVVSSLKEGAERAAESIDSGAALGKVTAVARITSEAS
>gi|99080982|ref|YP_613136.1| anthranilate synthase component II [Ruegeria sp. TM1040]
MLLLIDNYDSFTYNLVHYLGELGAEIEVWRNDALDVQQAMAMKPAGILLSPGPCDPDQAGICLALTEAAA
ETRTPLLGVCLGHQTIGQSFGGKVVRCHEIVHGKMGKMHHTDKGLFKGLPSPFDATRYHSLVVERESLPD
CLEITAELEDGTIMGLQHKELPIHGVQFHPESIASEHGHALLQNFLNEMKVPA
>gi|99080983|ref|YP_613137.1| hypothetical protein TM1040_1142 [Ruegeria sp. TM1040]
MGGAREKEHRREGETGMRGFLGGVSVGALVAVAGAAVWSLSTPLPQAVDVSQELPVTTLQPREVPAPPSD
VPGSDADLVEAAPAEPDANALGRDSAPDEIDTSLPERPSVSTDPEVTLDGAPVQSDTPRIAVTSDADAPV
SGGDDSIRPEAPSQDTTPDLGADSATRPEVSAASDLPLQAPDAEIPTPDLSTEADPAPLRQETLQVEAPD
IGTPPDVTASPVLTTPPVRSLTPSDPVEDNAGANGGVRIADLPQASEDPETNAGPSIGTRVLPLTERDTT
GADASSAADSSAAPFVRNSEPANPEPGLPLMSIVLVEEEGAVGAEALEDFPYPLTFTIDPSDPDAVARMK
ARRAAGFEVMVLADLPREGQPQDAETAMPVWFDRLPEAVGILEGIDSGVQGNRALADQVASIAGDLGYGL
VLQDNGLNTVHKMALRDGIPSGVVFRDFDGAGQDPRAMRRFLDQAAFRSGQEGAVIMLGRLKPDTISALL
IWGLQDRASSVALVPISTSLKRLLEPVSN
>gi|99080984|ref|YP_613138.1| anthranilate synthase component I [Ruegeria sp. TM1040]
MALIPDFDSFAKAYEAGENQVVYTRLAADLDTPVSLMLKLTGAQKDAFMLESVTGGEVRGRYSIIGMKPD
LIWRARGEQAEINRAARFDPEGFAPLDGNPLDTLRALLAESRIDLPDDLPQAAAGLFGYLGYDMIRHVEH
LPDVNPDPLGLPDAVMIRPSVVAVLDGVKGEVTVVSPAWVSEGQSARAAYAQAAERVMDAVRDLERAMPA
ETRDLGEAREVAPPVSNFTKDGYMAAVEKAKDYIRAGDIFQVVPAQRWTQEFPQPPFALYRSLRRTNPSP
FMFYFNFGGFQVIGASPEILVRVFGNEVTIRPIAGTRPRGATPEEDKALEQDLLADKKELAEHLMLLDLG
RNDVGRVAKIGTVKPTEEFIIERYSHVMHIVSNVVGELHEDKDALDAFFAGMPAGTVSGAPKVRAMEIID
ELEPEKRGIYGGGVGYFSAGGDMDMCIALRTAIVKDQNLYIQAGGGVVYDSDPEAEYMETVHKSNAIRRA
AADAARFTGNGNR
>gi|99080985|ref|YP_613139.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040]
MKKLSKTFVWILMGLLFVGLAGFGAINVSGTTRTLATVGDATVSVDDYARALQQEQRAIQAQSGQSIPLS
QLIAMGVDRGVLSGLVATAALDNELTEIGLSVGDEVLLEEITRISAFQGSDGSFSRDNYRFALDNAGLSE
AEFEADMRSETARTLLQGAITGGTRMPAVLGETLTNYIGARRSFSYVRLAEANVPLTAIAPTEDALKAYY
ETHIEDFTLPETKVITYVALRPDALVDQVEVDETALRGLYEERDAEFNVPERRLVEQLVFPDEDAAQTAK
AELDVGGTTFETLVADRELSLSDIDMGDVAIGDLGAAGEAVFAADVGAVVGPLPSDFGPALYRVNGVLEA
NFTSFEEALPVLREELALDRARRLIESRAEGLDDALAGGATLEDLAEEENGVVLGQLDWTANTTDDIAAY
DTFRNAAEAVTTEDFPEVGYLEDGSLFALRLDEVLPPRPEPFEDARTAVSEAYEGDRIAKALAAQAEQIK
TATEGNNGQFPEGREVIEQTGLTRTAYLDQTPVDLLNQVFEMEVGEVRVVSDAEGTVVVRLDEILPPDDG
NDMQFLSQALGDQLNQSLSNEIFQIYLQSVQTRARPQVNQQAVNAVHANFQ
>gi|99080986|ref|YP_613140.1| hypothetical protein TM1040_1145 [Ruegeria sp. TM1040]
MHLSRTNATFVSPIVQSRRWLEDVTFSDDLPLLNLSQAAPADPPPEGLRQAMADALLSETSAHLYGPVLG
NADLRKALAAQITRHYEADITPSEVAITSGCNQAFAATIQSLCAEGDEVILPTPWYFNHKMWLDMQGVTT
LPLPVGDGMLPEVAKAEALITPRTRAIVLVTPNNPCGVEYPAALMDAFFELAQRHGLTLIVDETYRDFDS
RDGAPHGLFSRKDWHETLIHLYSFSKAYRLTGHRVGAIVAAPERLLEMEKFLDTVTICPAQIGQIGAKWG
IENLDDWLAGERGEILARRDAIAAGFAPLAAKGWQLLGLGAYFAYVAHPFAASSDEIAQRLLHSAGMLLL
PGTMFTPAGAPEGHRQFRIAFANVDQTGIAEMLARLAQFDG
>gi|99080987|ref|YP_613141.1| xanthine-guanine phosphoribosyltransferase [Ruegeria sp. TM1040]
MSTKDPNRLPHEKGFHISWDQIHRDSRALAWRLDGLGPDDGHWRAVVAITRGGMAPAMIVARELDIRTVD
TISVKSYHSGGGKADQRREAEVLKSPDADIMGDGTGILIVDDLVDSGKTLELVRTLYPKAHFATVYAKPQ
GEPQVDTFITGVSQDTWIFFPWDMALQYVEPYRGTD
>gi|99080988|ref|YP_613142.1| enoyl-(acyl carrier protein) reductase [Ruegeria sp. TM1040]
MSSQLMAGKRGLIMGLANDKSIAWGIAKACAEAGAELAFSYQGDALKKRVGPLAEQLGSDIVLPCDVSDE
ASIDTLFASLEEKWGKLDFVVHAIGFSDKNELRGRYVDTSRANFQMTMDISVYSFTAVAARAEKMMEAGG
SMLTLTYYGAEQVMPHYNVMGVAKAALEASVKYLAEDLGKDGIRVNAISAGPIKTLAASGIGDFRYIMKW
NEYNSPLRRNVTTDDVGKSALYLLSDLASGVTGENLHVDAGYHVVGMKAVDAPDIEKG
>gi|99080989|ref|YP_613143.1| pyridoxamine 5'-phosphate oxidase [Ruegeria sp. TM1040]
MSDREGLFGGDDPFEIARKWLAEATETEINDPNAIALATVDASGMPNSRMVLLKEIEDAAFVFYTNYESA
KAQEIEASGTASFVMHWKSLRRQIRVRGHVTKENGPQADEYFASRSLKSRLGAWASKQSQPLASRSALMA
EVAKITAQKGPNPKRPEFWGGYRITPIEIEFWADGAFRLHDRFVWRKNTSHDNWTITRLSP
>gi|99080990|ref|YP_613144.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040]
MADDLSSLQHVRGLVKWFDPAKGYGFIVCPDDGPDILLHVNVLRNFGQSSVADGAGIEVVTHRTDRGVQA
VEIVSITPPEREDTPVLSDLAQLDDEELSNTPLEPARVKWFDKAKGFGFANVFGRDEDVFLHVEVLRQSG
LSDVQSGEALAMRVIDGKRGRMAVDVLAWEAASSDTSSV
>gi|99080991|ref|YP_613145.1| hypothetical protein TM1040_1150 [Ruegeria sp. TM1040]
MIRRAASHIAAVALWVVTTSGLATAACSRDHVDLRGPWGQARFSVEVVDTPETRAQGLMHRKSLPARSGM
LFIYEEPQRVAFWMKNTLIPLDMIFVEADGVVSHIHKNALPGDLTPIPGGDQVLVVLEVNAGIVETYGIS
VGTEMRHEVFSSEAAKWPC
>gi|99080992|ref|YP_613146.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp. TM1040]
MKIERRFTEAGQDAYASLDFIGATSEIRNPDGTIVFRLEGIEVPSTWSQVASDVIAQKYFRKAGVPSRLK
KVREKGVPEFLWRSVPADDNVELGGETSSKQVFDRLAGAWTYWGWKGGYFSSEEDARAYFDEMRYMLATQ
RAAPNSPQWFNTGLHWAYGIDGPAQGHHYVDYKTGKLTKSDSAYEHPQPHACFIQSVSDDLVQDGGIMDL
WVREARLFKYGSGTGTNFSHLRAEGEKLSGGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADH
PDIEQFIEWKVLEEQKVASIVAGSKMHEKMLNGIFEALRTWDGLSEDAYDPAENPALKKAIREAKKVAIP
ETYIKRVLDYARQGYDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEKDADWELINRTDGQV
AKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYMFLDDTACNLASLNLLTF
YQGGVFQAEDFMHASRLWTLTLEISVMMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMGYGYDSDEGR
ALCGSLTAIMTGVAYATSAEIASELGPFAGYERNADHMLRVMRNHRNAAYGATEGYDKLTVKPVPLDLQN
CPDARLTELAMSAWDEAVRLGEEHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK
IINRSVPSALEGLGYSSAQIEEIVSYAVGHGSIGNAPGINHTSLTGHGFGPNELAKVDAALESAFDIRFV
FNQWTLGEEFCTGVLGIPADKLNDPAFDLLRHLGFSKADIEAANDHVCGTMTLEGAPHLKEEHYSIFDCA
NPCGKKGKRYLGVESHIKMMAAAQSFISGAISKTINMPNNATIEDCQKAYELSWSLGVKANALYRDGSKL
SQPLAAALVEDDDEAAEVLESGSVPEKAAVLAEKIVEKVVIKEVMKSHRTKMPQRRKGYTQKAVVGGHKV
YLRTGEYEDGNLGEIFIDMHKEGAGFRAMMNNFAIAVSVGLQYGVPLEEFVDAFTFTKFEPAGMVQGNDS
IKNATSILDYVFRELAVSYLDRTDLAHVKPEGATFDDLGRGEAEEGVSNLSELSDGAASKSLEVLKQISS
TGYLRKRLPQELVVLQGGQTSVAVTALDGSTDPVAALQKLVPETSEAPAVSSAMDARTKARMQGYEGDPC
GECGNYTLVRNGTCMKCNTCGSTSGCS
>gi|99080993|ref|YP_613147.1| hypothetical protein TM1040_1152 [Ruegeria sp. TM1040]
MRFAARHNMGVLCGLTPLLGAVAALGLLVGSAGLADDWSGRFLGARLASGTLSPDPIPTLRAEPQAGRSV
PQADSGAGYRVEFPPVAIASGETATFELVPRAVGSVFVEELPEQEALSLGWEVEISPGFQLRGSVSGDYG
EDGNYSLSPEHRQLALTASFRF
>gi|99080994|ref|YP_613148.1| cysteinyl-tRNA synthetase [Ruegeria sp. TM1040]
MTTIKLHNSKTRKKEVFTPIDPDNVQMYVCGPTVYDRAHLGNARPVVVFDVLFRLLRHVYGDKKVTYARN
FTDVDDKINTRAAESGRAIGEITSETIQWFLEDMGALGALQPTHMPRATEYIPQMIAMIEELIARDHAYE
AEGHVLFAVDSWREGYGQLSGRSVDDMIAGARVEVAPYKKNPMDFVLWKPSDADQPGWESPWGRGRPGWH
IECSAMSHDLLGESFDIHCGGNDLMFPHHENEIAQSCCANPEGEFARYWLHNEMLQVEGKKMSKSLGNFF
TVRDLLDQGIPGEVVRFVFLQTHYRKPMDWTEKKAAEAEATLRKWRALTAGIEPAATAAAAVVDALSDDL
NTAGAIAEMHKLAAAGDGAGLLAAGQLVGLLGDEMGEWAAAPSVDLSAHEARLFKARQAAMETKDFSEVD
RLKAAYTEAGLEVRMSKTGVELVPGAGFDAAKLEALS
>gi|99080995|ref|YP_613149.1| putative alpha-isopropylmalate/homocitrate synthase family transferase [Ruegeria sp. TM1040]
MTERLYLYDTTLRDGQQTQGVQFSTLEKKQIAQALDDLGVDYIEGGWPGANPTDSAFFDEAPKTRATLTA
FGMTKRAGRSAANDDVLAAVMNAGTRSVCLVGKSHDYHVTTALGISLDENLDNIAQSVAHIVAEGREALF
DAEHFFDGYKANPEYALAACRAALDAGARWVVLCDTNGGTLPHEVSRIVTEVIAAGLPGEKLGIHTHNDT
ENAVACSLAAVDAGVRQIQGTLNGLGERCGNANLTTLIPTLLLKEPYASGYETGVPKGALARLTKVSRML
DEILNRVPQKQAAYVGASAFAHKAGLHASAILKDPSTYEHIDPAVVGNGRIIPMSNQAGQSNLRRRLAEA
GLTVEKGDPALGRILERVKERETEGYSYDTAQASFELLAREELGQMPEFFEVKRYKVTVERRKNKYNKMV
SLSEAVVVVKVDGEKLLSVSESLDPSGSDRGPVNALAKALRKDLGRYSKVLDDMRLVDFKVRITQGGTEA
VTRVIIDSEDGKGRRWSTVGVSANILDASFDALLDAMNWKLLRDASEAADAV
>gi|99080996|ref|YP_613150.1| hypothetical protein TM1040_1155 [Ruegeria sp. TM1040]
MQFDDDLIACAEAVQKGDPDRFLAAMAAPVEARAVLFALYAFNLEISRAPWASQESMIAEMRVQWWRDVG
AEIAAGGPVRRHYVATPLTRLVDRSAARAIDAMAEARRWDIYRDPFEDEAAFDAYIDANAGGLMWMAAAS
LGAADEAVVRDYAYAAGLAAYMRAIPELEAQHRVPLLDGTSAGLVALAERGLDRLAAARRRRGAVSPAAR
AALLPGWQAEALLRQVRAEPERVGAGALGVSEFRRRISLMWQAGSGRW
>gi|99080997|ref|YP_613151.1| major facilitator transporter [Ruegeria sp. TM1040]
MAMTMTAPAPDDHIAKRNVLILVLAQAFLGAQMPMIFIVGGLAGQSLATNPCLATLPISLIVAGSMISAT
PISAIMQRFGRRAGFAIGATGGALGGLIGGYGLYTGSFPVFLIGSALTGVYMSAQGFYRFAAADTASDSF
RPKAISYVMAGGLLSAIIGPQLVKATSDAFVIPFLGTYMAVIAVNVLGVGLFAFLRIPRPEAPSEDAPMG
RSRWELMKTPTIAVAVICAMVSYALMNLVMTSTPLAVVGCGFGQDAAADVVTWHVLAMYVPSFFTGHLIA
RFGVEKIVGAGLVILAGAGAVALQGVELSNFFVALVLLGVGWNFGFIGATTMLAGAHEAHERGRMQGLND
LLVFGGVTVASLASGGLMNCSGGNPVEGWAAVNMAMAPFLVLAGGALIWLVLKPKSAAA
>gi|99080998|ref|YP_613152.1| HhH-GPD [Ruegeria sp. TM1040]
MTVGRLIETPACVAEGAAWLAAQEPRFAEALAQTGDLPLRRKPDGFAQLLSAIVSQQVSVASANAIWARM
RAANLTGPRKIQWASDEDLRAAGLSRQKIRYARALSEARIDFKALRHAPTAEVIAELTQVSGIGVWTAEI
YAMFSLGRADVFAPGDLALQESARMLFDLSERPKERALREMAEAWSPWRSVAARLLWAYYHVAKDREGIR
>gi|99080999|ref|YP_613153.1| phospholipase/carboxylesterase [Ruegeria sp. TM1040]
MTRVLTAGRKEPLSGETRSAVVFLHGYGANGADLLGLADPLAEHLPDTLFVAPDAPEACAGAPMGYQWFP
IPWIDGSSEEESMRGMMAAVEDLNAFLDALMVDEDLLPEQVVLLGFSQGTMMALHVAPRREDPVAGIVAF
SGRLLSPETFSDEVVSRMPVLLVHGDQDDVVPPQSLPQAAEALQEAGFRDVFAHVMKGTGHGIAPDGLSV
ALAFMRDKLSL
>gi|99081000|ref|YP_613154.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MDRHRRGRFEKDGDVDLDPTNRRILAELARNARQSTAAIARAVHLSRQAVQDRIRAMEDQNIITGYHAAV
TEAAAPLRAMILLQFATRPCAPALTWLSEVSGITYVASLAGEWDAMAMIAVADTDALTQLNDQIAKSPLI
ERAQSQIILKEQR
>gi|99081001|ref|YP_613155.1| cupin 2, barrel [Ruegeria sp. TM1040]
MKLISPLEFTGTRAWDALDIERFTGATTVRLHWTDQAYVWHVNDGAEVFVVLKGAVDMHVRQTGREEVFS
LSEGDIFHAEAGDEHVAHPRGAARVLVIEAEGSI
>gi|99081002|ref|YP_613156.1| ribosomal large subunit pseudouridine synthase E [Ruegeria sp. TM1040]
MSRLIRFNKPFDVLPQFTDRGSEGSPRATLSDYVDCPGVYPAGRLDRDSEGLMLLTDNGRLQAWISDPKH
KLEKTYWVQVEGIPTEDALKALRQGVDLKDGMTRPAKAELISEPAQLWARTPPIRERKSVPTAWLELKIS
EGKNRQVRRMTAAMGYPTLRLIRYAIGAWTLDGLAQGKWDDLDPPRVPGPPKPAAKPHRKHAAKRRATAT
PARKPRQRRDG
>gi|99081003|ref|YP_613157.1| HNH endonuclease [Ruegeria sp. TM1040]
MDGDFRTEFVREPRALKQHPALVLNADYRPLSYYPLSLWPWQDAVKAAWLDRVAIVAEYDEVVRSPSTEI
RIPSVVVLKDFVKPQKRVAFTRFNLFLRDEFRCQYCGAKGDLTFDHVVPRASGGITSWENVVAACSRCNL
KKGSKPLHRAGMSLRKPPRRPGAEELRNMGRKFPPGYLHESWMDYLYWDSELEA
>gi|99081004|ref|YP_613158.1| ornithine cyclodeaminase [Ruegeria sp. TM1040]
MTQPSDKALVPFVSVDNMMRLIHHVGIEDMMRDLADYIEADFKRWELFDKTPRVASHSDVGVIELMPTSD
GEAYGFKYVNGHPKNTSEGLQTVTAFGLLADVYTGYPVLLTEMTILTALRTAATSAMVAKHLAPKGADTM
AMIGNGAQSEFQTLAMKAIIGLKAVRLYDKDPAATEKCAQNLAGLGVDVTICKTPEEAIEGAQILTTCTA
DKQYATILTDNMVGSGVHINAIGGDCPGKTELAPGILNRSDVFVEYPPQTRVEGEIQQMPEDFAVTELWE
VISGQKPGRTGDRQITLFDSVGFAIEDFSALRYIRDRIKGTDYFIDLDMLADPDDPRDLFGMVQRAKA
>gi|99081005|ref|YP_613159.1| amidinotransferase family protein [Ruegeria sp. TM1040]
MSTLQAPAAVVMVRPHHFTSNPETRGDNAFQAQADTNADTISARAIAEFDSAVAALRDAGVTVHVFEDTS
RDTPDSVFPNNWFSTHAGGHVAVYPMFAPNRRRERRWDVIEMLKREYRVQDVIDYSGLEQDSLSLEGTGA
MVLDHIGRIAYTVKSNRADPVLLERFCTHFNYEPMVFEACDDQGRDVYHTNVLMGIGTDYALICLDMIRD
TTRRAEVRQRLEESGRSVIDLSAAQIQNFLGNTFELTGHRRVLALSARAAQALTPDQRAVIERSAELLPL
SIPTLETAGGSVRCMLAGIHLSPRQRTMQ
>gi|99081006|ref|YP_613160.1| arginase [Ruegeria sp. TM1040]
MSSRHCILVGAPVDSGKRRTGCLMGPDAYRTAGLAQALESLGHTVEDIGNVTPAPHAPDDGTGKLHEPNL
TRAWTESLSEAAEAAMARGMPIFLGGDHALALGTVHGVANHAATVGRPLFVLWLDAHSDFHSLESTETGN
LHGCPVRYFTNQARFDNFPPVPNPVPPENVCMIGLRSVDTPEREAMEQVGIHRHDMRDIDENGIARPLSA
FLEKVAAQNGMLHVSLDVDFLDPSVAPAVGTTVPGGATVREGHLVCEILHDSGLMTSMDLVELNPFLDER
GRTAHLMVDLCASAMGRRVFDRPTRSYNT
>gi|99081007|ref|YP_613161.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MDKTDERLIAALRHDARASLSDLAMQLELSRTTVRTRIERLQSRGDILGFTVVLKEDVLRDPVRGLMMIG
IEGRGAARITRQLQGLPEVRAIHTTNGRWDLIVELGTETLETLDEALAKIRMFDGVVTSETNLLLATKKD
SRV
>gi|99081008|ref|YP_613162.1| disulphide bond formation protein DsbB [Ruegeria sp. TM1040]
MTFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGAVLPYLGAVAA
LATSAIGAFHAGVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCDDIPWEMLGLSMAGWNAVISL
GLAALWFAAARHARKNA
>gi|99081009|ref|YP_613163.1| DedA family protein [Ruegeria sp. TM1040]
MLRRLYDRTMALADHPHALWWLAGVAFIESSVFPIPPDVLMIPMILARPSRAWLIALVALFSSVAGGLMG
YAIGAFFYEGIGQPILEAMGKADKMVEFNERFNDFGFWAVLIAGVTPFPYKVITIMSGWTGMPIMTFVVT
SLLARALRFFLVAGLLWQFGAPVREFIEKRLGLVFTVFCVLLFGGFLALRYL
>gi|99081010|ref|YP_613164.1| diguanylate cyclase with GAF sensor [Ruegeria sp. TM1040]
MKINTITNWAYGLTVLLTALSGAAFIASINSSAEERMAVETHLILNELGEELAIGAELRTDEARLYVMRG
DPDHLEAFERTDQAEMALEESARDGTRLGTTPEETAFLNRIIADIDALQEMERAAIKAYQAGNIDRARGL
LFGGAHYQAHLKLIDDVVQFRRMVQSRTDRELDTAHQRSDWFEFVAQISLALTATVFLGVLYFVLRRRVA
VPLARMAGIVKRLASQDYEVEVPLDRRRDEIGELNRAVHVFRENGLERERLDAERRRDIKIKDLILKLMH
RVQACQSLDELGDVLARYAPQIFPDLSGTLYLRADGHETLNCVSRWQTSFDDPLEIICEACWALRRGRAH
YSALESKEDVICNHLADPNVSTLCIPLAAQGETIGLLSFSGAETSTEVAREDRVYLELIAENVALAAVNL
NLRTRLSQLVEHDPLTGLLNRRSLDVAFGDFVQNPPTLPTACLMIDIDHFKRINDEFGHEAGDTVMQSFA
GLLREVVGDSGSCYRFGGEEFVVILPDHDVDAAHEIAEGIRTRTAKMAIAHRGQSLGKVTISIGLAVAAS
AGTLDTLLSRADSALLQAKVTGRNITLHETLELAPS
>gi|99081011|ref|YP_613165.1| acyl-CoA synthetase [Ruegeria sp. TM1040]
MSANPYNTDLDRTPANYQPLTPLMFLERAATVFPEHTAIIHGPLRRSYAAFYARARQLGSALSHRGITRG
DTVSALLPNTSAMLECHYGVPMCGAVLHSINTRLDAAIIAFQLDHAMSKVVIVDSEFMPLMQEALALCSV
QPLLIEVDDPVYEGARIKTEAVDYDSFIADGDAEFAWLMPEDEWDAISINYTSGTTGDPKGVVSHHRGAY
LLAQGNALTTTMGKHAVYLWTLPMFHCNGWCFPWTLSAIIGTHVCLRQVRADQIWNALADEGVTHLCGAP
IVMSLMISAPADVQRPLDQTVQFFTAAAPPPEKLLADMKTAGFEVTHLYGLTETYGPAVVNDWHQSWSEL
PHDEQSRLKSRQGVRYLPLEGLNVLDPETLEPVPHDGETMGEVMFRGNVVMKGYFRNPDATRKAFEGGWF
HSGDLGVVHPDGYIQLKDRSKDVIISGGENISSIEVEEALYRHPAIAVTAVVAMPDEKWGETPCAFIELA
EGAEIDTDALRQWCRDQLAPYKVPRKFVLTEIPRTSTGKIQKFALREQAKSLC
>gi|99081012|ref|YP_613166.1| enoyl-CoA hydratase [Ruegeria sp. TM1040]
MQTDAILLKQLSETGVLRLTLNDVARRNALSEAMLGTLGEALASAGQDPAVRVVVLAANGPAFSAGHDLK
ELTRGRAAPDGGKAYFARIMALCSAVMQSIVTCPKPVIAEVTGVATAAGCQLVASCDLAIAAESARFSTP
GVHIGLFCSTPMVALSRNVAGKHAMEMLLTGDMTSAERAAEIGLVNRVTSEDGLQDAVLELAHKIASKSS
MTLATGKQAFYAQREMPLSDAYDYAADVMVKNMLAQDAAEGINAFVEKRSPQWQDA
>gi|99081013|ref|YP_613167.1| OsmC-like protein [Ruegeria sp. TM1040]
MSHLAIELHWQRTENELQTGKFSNEHTVQYNSTYDVQVDAAPDWGGDAANTNPEQALASALSSCHMMTFL
ALSAKAGWPVASYHDYAEAHLGKNAKGQMSVTRIDLNPVVRFDTGFSVDAEELAQMQDRAHRYCFIANTL
ADSVEINIH
>gi|99081014|ref|YP_613168.1| glycine cleavage T protein (aminomethyl transferase) [Ruegeria sp. TM1040]
MTQADDFGFGTQIRKSPYFDATVRWGAKGFSVYNHMYIPRDFGDPEQNFWNLVNDAILCDVAVERQVEIT
GPDAAKFVQMLTPRDLSTMAVGQCKYILITNAEGGILNDPILLRLAENHFWISLADSDILLWAQGVAVHS
GLDVQICEPDVSPLQLQGPKSGLVMQELFGESIMDLKYYWLRELDLDGIPLIVSRTGWSSELGYELYLRD
GSQGDALWERIMAAGMQHGLKPGHTSSIRRIEGGMLSYHADADIHTNPFELGFDRLVNLDMEADFIGKAA
LKRIQKEGPARLQVGLVIDAAPLRGPNTTFWPITKNGETIGKVTSAVYSPRLEKNIALAMVDAEHAVIGS
DVEVTMTSGATSASVVERPFFDPRKQIAAA
>gi|99081015|ref|YP_613169.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MILQGVRLDGCVTQMKKQGLDATEIRILSAVQQHGQLSKTRLAELVNLSPTPCWARLVRLKAAGYIRGYH
AELALDRIIDFTQVVVTISLTHHRKTDFDRFETYIRGLDEVIDCVATGGGMDYVMKVATPTLAAFQSLMD
EMLSAELSIDRYMTYIATRQIKTSRPNLAKLVAKSEK
>gi|99081016|ref|YP_613170.1| TRAP transporter solute receptor TAXI family protein [Ruegeria sp. TM1040]
MAIINRAITGLAATILMCATLSSPQAQAEDFITIGTGSVSGLYYPVGNAICRLLNKDRHRHGIRCTAETS
EGSLGNLRDLREGRIDFALVQSDWQAKAFEGTAALSQGEPFSDMRAVLSLHEEIFTVVARADSEIATFSD
LRGMRVNIGNEGSGQRATMLALMGALGWSMESFSEVHHLSASEQSAALCAGTFDAMVFAVGHPAATVEEA
TTACDSVLVSLDEPSIRAVIADTGYFEFTEIPANLYRGNPHPVQSFGFTATLVTTRHQRLKVVHELVRAV
FSDLDVLRGAHPAFSRLEAGPMVQNGQTAPIHRAARAYYRASDLLERDGQ
>gi|99081017|ref|YP_613171.1| hypothetical protein TM1040_1176 [Ruegeria sp. TM1040]
MPLGALAQGFANLGTEATGFAVPERGVALRFPEDHAAHPEYRIEWWYLTANLRTAEGADLGIQWTLFRSA
LAPEERAGWQSPQIWMGHAALTTATTHRFAERIGRGGTGQAGVSAAPFSAWIDDWEMTSPDASLEKLTLT
ARGQDFSYDLDLAADAPLILHGDAGYSVKSADGQASYYYAQPAYEVQGTVTLPEGPVNVTGSAWLDREWS
SQPLAEDQTGWDWFSLRLDDGAKLMGFVLRGDRGDFTSGTWISPDGTAHPLSPGAFQATPQDWSEVAGRS
LPTTWQVSLPERDIDIRVRALNPKAWMGTRFSYWEGPILISGSHGGSGYLEMTGY
>gi|99081018|ref|YP_613172.1| hypothetical protein TM1040_1177 [Ruegeria sp. TM1040]
MRQTLYCFLSHWRRAPLQLFLLVAGLALATALWSAVQAINAEARASYARAVEQLGNTELQALAAPDNDPI
PLQTYVSLRRAGWQLSPILEGTWQAAGSPITVLGVDALSYPGTAAMLDAASEAGFDLPALLTPPGVVYAH
PDTLPALAEFENRVPLPQLPPRVVLMDLSLAGELLGQENSLSRLLILPDQPSGLTALAALAPELEVSQNA
DGALADPARLTRSFHLNLTAFGFLAFCVGLFIVQGSVTLGIEQRRGTITTLRCLGVSTRALLRALCLELL
ILAVVAGTLGLVIGYLLAAMLLPDVSATLRGLYGAPVDGSLTLRPLWVLSGLTMTAVGTAAAGLQAFLAL
HRMASTLSRPAVSASRITARGIALFCGAAIGLIAAGALALWGLPGLWGGFGFLGGTLLGSALLVPPLLWG
ATGLFLKPLKSPVWRWMVADSRLQLVGLSLPLMALLLAIATNIGVGTMVSSFRLTFLDWIEQRVPADAYL
EVTSPLAAEEVATWAESLGARTLPQYRSDSRTASAPLRIYGIVDDPIYRSKWPLLSADPEVWTQLYSAGA
VLVSEQLAHREGLALGDRLRLAPDWSPTVAGIYPDYGNPDGQAVVALSTLRAKRSDLAVSRVGLIAPEGL
STAELMQRARGDLNLGTDEIVEGAAIRQLSVGIFDRTFVVTGALNILTLGVAGFALLTSFLSQWHKRLPH
LAPIWAMGVTRPALAGLELCRSLAFALATFMLSLPLGLFLAWALLKVINLEAFGWRLPMYLFPADWGRLL
VLTLAVAALASLLPALRLARLAPATLLGVFASDR
>gi|99081019|ref|YP_613173.1| ABC transporter related [Ruegeria sp. TM1040]
MLLSVNGLTHRHPGGTRDVLRDVSFEVARGESVALTGESGSGKSTLLHMLAALDRPSHGEIRFLEHEITR
LNDRAASELRRSRIALVFQQFNLVPALTVADNIALHAKLGGRFDPAWSAEVTSRLGLADLTARYPEQISG
GQQQRVAIARALTLRPDLLLADEPTGNLDETASAEVLRLMLELVADTGCALFLVTHSAAIAARCSRHLHL
RAGQVRDHAP
>gi|99081020|ref|YP_613174.1| Ion transport 2 [Ruegeria sp. TM1040]
MTLIQQIFWGGLFLFVCLILETIMLLWCADALRRHRIRFQRLSSMAHQTGVLLISIGFVVGAHTAQIWIW
SAALLLKAQTFETWNEAVYFSVATYTTLGYGDIVLDAGHRIFASFAAMTGMLAFGISTAFLVAVMRSGLA
HGPFRDE
>gi|99081021|ref|YP_613175.1| ribonuclease BN, putative [Ruegeria sp. TM1040]
MMAIGQAVIQALVIARRALGRFSRKNAWVLSSHIAMSMMMALFPFVLFTVSLSGAIASLFSHRIVVDDVV
NLVFGSWPQSVAEPITREVYAVLETSGTGLMTLGGVLALYFASNGVDAIRIAMLRAYGQEETRPFWKHRL
ISLGLVILGGAGLLLTAVFELFLPLGARFVGRFFPDLDFLRGWEQGANGLVVAVIPVAAVFLYHLVLLPK
RETLRHVLPGALVTLVLWWASGAGFAFYVSSFASYSATYAGLAGAMAALIFLYLNAAILILGAEINGVLQ
TDRQARDA
>gi|99081022|ref|YP_613176.1| hypothetical protein TM1040_1181 [Ruegeria sp. TM1040]
MDLRVAFRGNLFMSQTALPSGRAKLLELTRSVVTQSHARAGLARRATEKPGMPGASNSDPLLSLRDLAVK
SLRPKAMRDRG
>gi|99081023|ref|YP_613177.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ruegeria sp. TM1040]
MAKKPTGKNTSGRGQRDLTVKVKTARGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKIMELDDKYRF
LVPGARVVDLGCAPGGWAQVAVPRINALGEKSGKAIGRFIGIDLQEVEPLAGAEFHQLDFMDEGADDQVK
EWLGGQADVVMSDMAASSSGHKQTDHLRIMSLCETAAYFAFDVLEEGGTFVAKVLAGGAEGELQKLLKQK
FKSVANVKPPSSRADSSEKFVVATGFRG
>gi|99081024|ref|YP_613178.1| Ppx/GppA phosphatase [Ruegeria sp. TM1040]
MAPRRSKGTGAFPRAVETPVPARPDPDALYAALDLGTNSCRMLIAQPKGSGFHVVDSFSKSVQLGSGLEK
TGRLSRSSMARTIQALRICQQKINRNRVKRMRLVATEACRRAKNGRDFMRQIKRETGLSMDIIQPEEEAR
LAVISCAPLVSTKTEQLLVVDIGGGSTELVWIDISSVPRRDRPSAIMRLHAGFHTVESPFPAAKVVDWIS
VPLGVATLRDQFNDVEDDAARFALMSWFFEEHLADFAPYKDEQAREGFQIVGTSGTVTTVAASHLGLKRY
DRTKVDGLRMTSDQIDKVIRGYLELGPQGRRRDPRIGEDRQALIMSGAAILQALLRCWPTDRLSVADRGL
REGLLYAQMSADGVLEDGPF
>gi|99081025|ref|YP_613179.1| hypothetical protein TM1040_1184 [Ruegeria sp. TM1040]
MPDVTIVYWRDIPAQVIVGKGRRGAKRQLEERFEQAIDRAAMKVNAKDSDAYLAEWRKAAPFSVEGEPGD
IAEAEATRLEQEYDQDRLKALIANDGWA
>gi|99081026|ref|YP_613180.1| metF protein-like [Ruegeria sp. TM1040]
MALLNFKKRAADTEITVNPDVEAFLQGYSIEVMPRTAQKVEDFRELLPAGTRVYIAHIEGTPIEDMIATA
KRLNDEGYPVMPHFPARIIKDEATLADWIARYQGEADVKQALLLAGGVAQPHGAFDSSMQLLETGLFDKA
GFTNLHVAGHPEGNKDIDPDGSMKNVSEALQWKQKFSERTDAKMALATQFAFEAKPIIAWANGLKDAAVD
LPIHIGIAGPAKLQTLIKFAIACGVGPSLKVLQKRAMDVTKLMLPYEPNEVVAELAAYKAANPDFNITNV
HFFPLGGIKTNATWAINNGGESTRPAKQQG
>gi|99081027|ref|YP_613181.1| methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase [Ruegeria sp. TM1040]
MTRTVVESKTKTAVLGFDEPFCVIGERINPTGRKKLAAELEAGDFSTVEKDALAQVMAGANILDINAGVV
YNSNPNPNETEPPLMTKIVELVQGLVDIPLCIDSSVPGALEAGLAAAEGRPLLNSVTGEEDRLELVLPLV
KKYNVPVVAISNDDTGISEDPDVRFAVAKKIVERAADFGIPAHDIVVDPLVMPIGAMATAGQQVFALVRR
LREELGVNTTCGASNVSFGLPNRHGINNAFLPMAMGAGMTSAIMNPVALPVTQKAIAEKKEQVAAAGIIL
PEGMDDETFVTMFGLGSTKPRAGKEMEAIRAANLLTNNDPHGGDWIKFNKAPSSEAEGEGRGRRGGGRRR
RA
>gi|99081028|ref|YP_613182.1| sugar ABC transporter (sugar-binding protein) [Ruegeria sp. TM1040]
MVNFKQVAVCAAASMTTVPGAALAEAGTLKCEPGETYIMNVMVSSHPYWVPVYQGFKQAAEAFGCETVFS
GTPDYDITKQIASFEQDMVKAPAGILLHPMQSDPFIEPINRAIDNGTEIVTFAADSPNSKRSGYITSDNM
AEAKFAAEEFVKELGESFEFAVLENPGQSNHDLRVTAFLSYMEEHYPEAKLVGRQATNQDSNAAYRATAS
IIQANPDLKALWIPEAGSAEGAVAAKLEAQSDVMVMHADITPTTLEHIKAGNIHAALNPNQGMQGFMGFM
GVFLAAKSEVFDPFNDYKVSGYNPVQIPFVDNGFAVITQENADSFDLNAYMAGRDPS
>gi|99081029|ref|YP_613183.1| ABC transporter related [Ruegeria sp. TM1040]
MTGDVILQISNLTKSFGPVKALKGVDFELRRGEIHAIAGENGAGKSTLMNIIDGILQPDSGEIRLDGTPV
EIPSPAAAQKMGIGFVHQEIALCPDVSVAENIFMAATNSSRSFLMDYKGIEAKAREVFAQLSSIDPSVLV
RDLSISNQQLVEIAKALTLDCRVLILDEPTAALTEAEAQVLFKIMRRLADQGISLIYISHRMVEIFDNCD
RVSVFRDGRYVTTQDVAKITPADVVRAMVGREIGDLYPEKQRPEACSTTEVLRVENLCEAERFHDVSFSL
HKGEILGFAGLIGAGRSEIAKGVCALEGQVTGRLWLNGEPLALRDYQDSIDAGIVYLSEDRKGDGVFLDM
SIASNVSALKVEQVASALGLIQPGREIEQADRLGRKLNLKCGTLQDPVSSLSGGNQQKVALAKMLSVNPR
LIFLDEPTRGVDVGAKAEIYRILRDLAEEGAGIVVISSELPELIGLCDRVLVIHEGCLSGEVSGPDMTEE
NIMHLASGTQQGTGAASVAAQ
>gi|99081030|ref|YP_613184.1| inner-membrane translocator [Ruegeria sp. TM1040]
MEQSVNIALAETSRGKSLLGRLLRMRETGLILIILALFIGMSFASPYFLTWVNIRAMTMAFAVEGIVVVG
MTVLLISGGIDLSVGSVTALSGVIAGWLFLQGIDPWVAAAIAIFACTAIGSFMGFFTTRIGLHHFIVSLA
VMVIARGICLLATGGRPIGLYTLPPEFKFIGQGTIGPIPVVIILFVVVVIAADFMLRRTTMFRKVFYTGS
NEKAAAYSGIRTKKVVFLTTTLCSALCGFAGIIYMARFGSAQPTFGLGMELNVIAAAVIGGASLNGGSGS
IFGAILGTVLLSVVSSSLALLDVSVYWQDIIRGSILLAAVTIDHFLNKKRG
>gi|99081031|ref|YP_613185.1| DeoR family transcriptional regulator [Ruegeria sp. TM1040]
MVEHRQGFETVRQIHTVLVLHFIEGKKQSEIATELNLSTSKVNRLISQGRKLGMLKIEIESPFQRLMDIE
EAVTRFANLGSAVVTPTVEGSEKATLQQVGRAAASHLTETLRDGDVIAITGGKAVSALVDGLDVERQWDV
TVVPLTGGVQGKYFTDVNHLATRLAERLGGKTMLLHAPLFAESKAQRDMLMDISSIKEVLDLARRANVAL
VGIGSVQPAESSYYDLHPVPEADRKMLVGTGVVGEFMGHLIRDNGAVANFALNSRLVALSPQELGQCERV
IGIAAGASKVRPIEAALEGGFLSSLIVDEDTAAEVLQKYEGTEYVA
>gi|99081032|ref|YP_613186.1| aldo/keto reductase [Ruegeria sp. TM1040]
MSHEMLKREIGRSGIEASAIGLGTWAIGGWMWGGTDEARSIAAIQASIEAGVSLIDTAPAYGQGVAEEIV
GKAIKDRRDKVVLATKCGLVWHTQKGNHFFDYDGAPVHRYLGKDAIIYEVEQSLTRLGTDYIDHYITHWQ
DPTTPIAETMEALEQLKTQGKIRSIGASNTTPLDVRAYLEAGQLDAVQEEYSMVNRAVEAEMAPLCHENG
VSILSYSSLALGLLTGKIGPDRVFEGDDQRKDNPRFSIANREKVARLMEAIAHIAEVHGATKAQVVIAWT
LQQPGITFSLCGARDATQAVENAKAGLLRLSADDIARISGAASTHLSDLDG
>gi|99081033|ref|YP_613187.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MPDQRVKNWQSLSGDGAFDVVVVGGGVNGIGTYRELALQGLRVLLVERGDFASGCSAAPSRMIHGGLRYL
ENGEFDLVRESLQERDALLVNAPHFVHPLPTVIPVTSLFSGLFNAAASFWGLSSKPAPRGAVPIKLGLSL
YDWVSRKRRLMPRHSFQGRRATRRDWPELMEEARGTATYHDAWIGFPERLCIEMLQDVARVAPGCVALNY
CEIAAETGGFSVTCQRSGQTAEIRPRLIVNATGAWLDETVAQLGGTAPRMVEGTKGSHLILDHPELFAAL
KGNMVFFENDDGRVCIVFPFHDRVLAGSTDIRVARTGRVRCEPEETDYILGALAKVFPGLQIDASQIVFS
YSGIRPLPQSDQDFTGRISRGHDIRKLEGRVPQLCMIGGKWTTFRAFAQQTADAALGELRHGRRVDTLDL
AIGGGAKFEGREAQILQELCKVQNLSHARAGHLLQRYGSHAPKVAIACGREDRPLAAGTLYSEGEILHLI
RSEFVETLSDLALRRTDLAISGVLSMQIIEALAALMAQETGLSPDLITAQKQDLIAELSTYHGVTAATLE
RRNTERNAQCA
>gi|99081034|ref|YP_613188.1| deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase [Ruegeria sp. TM1040]
MSMKARMNRMFSNGGCLDVAIDHGVCNEPSFMVGLEDMPAVMNTLIDARPDAIQCAYGQADLLQSRPEKD
KPALVMRIDMGNPYNDQRHRVMWSMLQNAEEPIIGALEMDAAAVVVNLFMLPDEPELFRQCVENISRVRA
SCEKYGMPLMIEPLVMLPNDVRGGYQVDGDAEKIVTLTRLASEMGADIIKADPTDDPEEFYRVVEAARVP
VLVRGGGKDDLRAVLNKSAALMRQGAKGMVYGRNIYQHENPKAVVNALMAMIHSGADGEEAWDIYNRG
>gi|99081035|ref|YP_613189.1| carbohydrate kinase, FGGY [Ruegeria sp. TM1040]
MGLDAGNTVIKAVLFDQDGRQVAMQALDGQTATPAPGHVERDLGELWQNAGQVIRGCIEEAGISARQIAG
VGCAGHGNGLYALDKSGAPLIGIQSLDTRAAELAEDLSETHGSDLHKICLQKPWPSQTPVLLAWVKRHQP
EIYDRIGTVLLCKDFITHQLTGIKVSDISDMSGCGLTRMPACRYDAELMRLYGLQDALSMLPALVEPAEI
AGHVTAAAAAQTGLIEGTPVIGGYFDVISSALGSGVCRAGEASIIAGTWSVNQVFSPEPVLDSSVFMASG
FAPGRFVNIDSSATSAVNLEWYVRELVERGAHVDDPFGQCNNLVAEVTPAPDDPICQPFLYGSGQGAQFR
GGYFGLAGWHGEGHLLRALFEGVVFEHRRHIEVLRGAGLDFDTAVLSGGGSRSPHWPQIFADCLDRKIRV
SEAKETGALGAAIGVAVAVGLAEDYESAVARMTRTKAEFTPNPLMRRHYDQRYALYSELNATLQPLWARL
GAMQTGQCDENGS
>gi|99081036|ref|YP_613190.1| antibiotic biosynthesis monooxygenase [Ruegeria sp. TM1040]
MAVLVIAELKTAYERRDTLLEFVQTLAAHSRAEPGCLSYRPMLDVDQAGTIVIVEKWQSAAALEAHGQTA
HMADFKAELGGVEVSIETFDIANPS
>gi|99081037|ref|YP_613191.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MPTVTNAFARAMAQAGGMTLTDDGELISGGTVVRRLPKPADGKLSETDYFDLLDWIRFQQKDEMALLAAY
AKLIRADDIGVLGLAMKTAPTLRASLERLERYWQVVTDTAIYRLDTSQDPALLIFEARTGHHPVLDFRNE
GAFAGLARNMRLFVEGDLVLDYVTFRHACRSDPEQYQAHFGCSVRFDAEQNVIALRKEMLDLPNRLGDAA
VSDFLTTHLETEIGTLQDETSVRAGLLRLLTPALSNGVPQAADVAREMGMSERTLYRRLADEGLTFRDVL
TEAQSSLAQELLKDSRSSIAEIAFLTGFSEQSTFSRAFKRWVGQAPAQFRQQFPSP
>gi|99081038|ref|YP_613192.1| hypothetical protein TM1040_1197 [Ruegeria sp. TM1040]
MTETSPTHPIPQKPRGSRWSGLPAWPQIRLGEMTQMLLLAVAAALLTGLLALPFTMQGRLIADPIGDFGR
ITPVEDARQSA
>gi|99081039|ref|YP_613193.1| hypothetical protein TM1040_1198 [Ruegeria sp. TM1040]
MTLILRLDTSPRVKGAYSRHLGDRFIEEWINRRSDMRLIARDIGCPSPSAPGGLHDPRLCFDTAKKQYIP
CNHRKRLSAGIYAEVDAAEVIVITAPLGVDGVPAALTEWCDHVAQAQSRRASGPFGRRYARNAMLMGKMI
VLLSAWEEDLWSDRDGASLPHLNVETRPLGASVIHHMHIARSGMGHEAQALSRFTAAGVLEDLVARFAHP
RSHAESVVTASACSAQVA
>gi|99081040|ref|YP_613194.1| hypothetical protein TM1040_1199 [Ruegeria sp. TM1040]
MIRSLPAPLRPAAFVTVLLNGLFAAAFAVVIALPSKTEAADRDQVKAFLEITGFDVALDSIAESASDAPK
ILGADAGDFGLAWESLTAEVFDTQKMRDTALDILEQTLSAEALFFAAEFYASDLGQRLVAVENASHMNED
GGTLEAGERIVSKLVEEGDPRVALYRDMNVAIGGTETALRAVQEIQFRFLMAASAAGVIEMRIDADGLRA
LMKAQEGEMRREMAASSLAQSAYIYRDFTIEEVEAYVEALEHPLMQEVYELLNAIQYEIQANRFEELAHR
MSDLQPVQEL
>gi|99081041|ref|YP_613195.1| 50S ribosomal protein L21/unknown domain fusion protein [Ruegeria sp. TM1040]
MFAVLKTGGKQYKVQAGDMLRVEKLAADAGETVQFNDVLMIGGDAPVVGAPFVSGAAVQAEVVEQIKGDK
VIKFVKRRRKHSSKRTVGHRQKLTLVKITEILASGADASGVKAATGKGEAAPAAKAAPKAKAAAPAAAGS
DDLTQLTGVGPAAAKKLEAAGLTTFAQIAALSEDDIAGIDAIKIKPEWVEQAKELAQG
>gi|99081042|ref|YP_613196.1| 50S ribosomal protein L27 [Ruegeria sp. TM1040]
MAHKKAGGSSRNGRDSAGRRLGVKLYGGQSAIAGNIIVRQRGTKFWPGEGVGIGKDHTIFATANGNVTFH
KGLKGRTFISVLPAAEAAE
>gi|99081043|ref|YP_613197.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MGLDQTDQQAIIEADRFDLRPLRPSDVGLIEHYAGDARIAKMTAPIPHPYPPGAAEAYVKRGIEAEQGEF
IWAMDGTKDGNPELMGVISLKSMDRNQSEVGYWVAPAFWNTGLASMAVQLLVEANPLGDATMFASVFQDN
PASARVLAHCGFEYLGDAEDFSVARDANVPTWTYSRKL
>gi|99081044|ref|YP_613198.1| GTPase ObgE [Ruegeria sp. TM1040]
MKFLDLAKVYIRSGAGGNGCVSFRREKFIEYGGPDGGDGGKGGSVWAEAVDGLNTLIDFRYQQHFFAKNG
QSGMGRQRSGKDGDEIVLRVPVGTEILDEDEETVLADLTHVGERVLLAKGGNGGFGNLHFKSSTNQAPRR
ANSGQEGVERTIWLRLKLIADAGLLGLPNAGKSTFLSSTSNARPKIADYPFTTLHPNLGVVGIDNTEFVM
ADIPGLIEGAHEGRGIGDRFLGHVERCAVLLHLVDGTSETVAEDYRTIINELEAYGGELASKPRVTALNK
IDALDDEERAEARAALEAEVGAPVLMMSSVSREGLDLVLRAVRAEIDDDRLRIKQAEASEEEDTPWQP
>gi|99081045|ref|YP_613199.1| gamma-glutamyl kinase [Ruegeria sp. TM1040]
MAALSTARRVVIKIGSALLVDRTSSALRQEWLLSLAEDVARLKKQGKDVILVSSGSIALGRGALGLPRKD
LPLEQSQAAAAVGQIRLARAYEEALAPHGITTAQVLVTLEDSENRRRYLNSRATLETLIGLGAVPIVNEN
DTIATDEIRYGDNDRLAAQVAVTVGADVLILLSDVDGFYSANPALDPDAKRFDRIEQITPEIEAMAGDGV
SGLSKGGMITKLLAAKMATAAGCAMAISEGSVMSPVSALEAGAASTWFTAQGDPQVARKRWIAAMKTRGV
ITVDEGAAKALHNGNSLLPAGVRHVEGDFGRGDPLAILGPDGRKLGQGLSRYTAEEARALQGHRSDEIEA
ILGYAGRAALIHRDDMAL
>gi|99081046|ref|YP_613200.1| gamma-glutamyl phosphate reductase [Ruegeria sp. TM1040]
MARTPPGEEKGKDMKDLENIPALMEDIGKRAKAAAQQLATASAAQKEQALNAAADAVWAQRGEIIAANAK
DLEFGRDKGLSSAMMDRLMLDEARIQGIVDGLRAVAAQADPVGAVLDEWTQPSGLRIQRVRTPLGVIGVI
YESRPNVTADAGALCLKSGNAVILRGGSESLHSAQAIHGCLAAGLRAADLPEDAVQLVPTRDRAAVQELL
TMTAYVDVIVPRGGKGLVGLVQREARVPVFAHLEGIVHIYLDKDADRKKAIDVVLNAKTRRTGICGAAEC
LLIHEDIADSIGKDVLDLLAMGGVEIHAEEGLPGPDSMQVATSEDWGKEYLDAIIAAKKVASIDEAIAHI
RRYHSAHTDCIITENDAAVAQFFSELDSAILMHNASTQFADGGEFGMGAEIGIATGKMHARGPVGATQLT
SFKYLVRGDGTVRA
>gi|99081047|ref|YP_613201.1| hypothetical protein TM1040_1206 [Ruegeria sp. TM1040]
MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAFGAAG
EQELGRMEIMSVLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESALPYGGTVQILRSTDGWTVTG
EGRKINLDETLWSGLVADTTPAEITPALVQFALLPAAAKEAGYTLAFNQTAEKISISF
>gi|99081048|ref|YP_613202.1| hypothetical protein TM1040_1207 [Ruegeria sp. TM1040]
MNDLNAILAPGMFVRHPDHPDWGLGQVQSNVGGKITVNFPDQGKVVFDGARIALVPVFDP
>gi|99081049|ref|YP_613203.1| ornithine-acyl[acyl carrier protein] N-acyltransferase [Ruegeria sp. TM1040]
MHDGAPQFSVRMAKTDEDLRAAQALRYEVFVRELGGCGALVDHEAGLERDQFDPYFDHMLVSDDTSGEVV
GVYRLLRGDQAERLGRFYSEDEYDLAPLRASGRKLLELGRSCLHAQYRGGMAMFHLWNGLAAYVAEHEIE
VLFGVASFHGTDAMDLAQPLSMLHANHLAPEELRVRSKAYQPMNVLPEDQIDRRKAMLETPALIKAYLRL
GGFVGDGAYVDHDFNTTDVCLILDTARMNARQKSIYTRGTASA
>gi|99081050|ref|YP_613204.1| lyso-ornithine lipid acyltransferase [Ruegeria sp. TM1040]
MSVSWQSETPPEKTRITALGWGRVVLRGSALAVLVFGCLALLLMVRLVERPLFGVQRPLTPFITVFVCRN
AFRILGMRFHTRGRSMRAPGIVVANHSSWLDIFALNAKKRIYFVSKSEVAGWPGIGWLARATGTVFIERN
RAKAQEQKALFAARLKAGHKLLFFPEGTSTDGLRVLPFKTTLFASLFEDDLREEMHVQPVSVVFDAPKGA
ERRFYGWWGDMDFGSHLLKVLAAQPQGGVEILYHPPVRVADFADRKALAAYCEEVVRDGHASALPLVVDA
VAKDHP
>gi|99081051|ref|YP_613205.1| 30S ribosomal protein S2 [Ruegeria sp. TM1040]
MALPEFTMRQLLEAGVHFGHQTQRWNPRMSPFIYGARNGIHIMDLTQTVPMLDQALTAIRDTVAKGGRVL
FVGTKRQAAAPIAEAAEKSAQYYMNHRWLGGTLTNWKTVSQSINRLKEIDERMAAGAEGLTKKERLGMER
DQEKLQASLGGIRDMGGVPDLLFVIDVKKEALAIAEANKLGIPVVAVVDTNCSPDGVDYIIPGNDDAARA
ISLYCDLVARAALDGMSAQLGAAGVDLGALEEAPVEEAVAEEAAGA
>gi|99081052|ref|YP_613206.1| elongation factor Ts [Ruegeria sp. TM1040]
MAITAAMVKELRESTGAGMMDAKKALVENDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVVVDGGKG
VAVEVNSETDFVAKNGEFQTMVAGIAKAALSVNTVEELAEADLGGKTVATTLTDKIATIGENMTLRRMAK
LEGETVVSYVHNAATDGMGKIGVLVALSGGDEAIGKQVAMHIAAVNPAALSEADLDPAIVEKERQVQIDI
ARESGKPEQVIEKMIEGRMKKFVAESTLLNQQFVVNPDLTVEAAAKEAGATVTGFIRVEVGEGIEVEKED
FAAEVAKAAQG
>gi|99081053|ref|YP_613207.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
MTLSEYLQQLTQFKTIEELWRAHVQQMSRYGFDRLLYGYTLFKTRTSLGDPDDFVILTNHCPEYLQGFLA
DGLYAHAPMLTWALENEGHASWRVSQEMAAQGLLDKQARKVQDFNQSMGVHAGYTISFNSASERFKGAIS
LAARADLDQDGIDQIWAEHGADIVLMNNVAHLKILTLPYHAPKRGLTKRQREVLQWVGDGKTTQDIALLM
GLTPATIEKHLRLARATLSVETTAQAVLKAALHNQMYAVEH
>gi|99081054|ref|YP_613208.1| hypothetical protein TM1040_1213 [Ruegeria sp. TM1040]
MLPASADPRAILIVLEPSPWWAALALCDLISRRFPPKRQPAVECPVILRKVCANTSGDQGAAFAKPKGCH
VALNDCGKTEFHTGDAPHASGFRNLNQRFGSTGAPKGDMNTRDKLNWQNELAAGTATVCFDPETPRFHDR
RLWTPHALCLNARTVPCPAWKLETQT
>gi|99081055|ref|YP_613209.1| enoyl-CoA hydratase/isomerase [Ruegeria sp. TM1040]
MEREEWINRRLHGDGVVELQLGHAPQNQLTSAFLKDFAQEINEMRSDSDVRSVLLTSPFKDFSTGVDPEL
KDVSALEGDLNAAFLALYAFPKPVVVASVGLSSGAGMFFVLASDLRVAHARAGFELIDVQLGRAYPAALM
EIARATLDTNTQRRLMLTGQRLGPIAARNAQFIEVLADDLEDLHGYALKEARRMAQLPAEAYAAIKRDLR
TDTIKRIESRLDAALQPTFGTSRLAS
>gi|99081056|ref|YP_613210.1| response regulator receiver protein [Ruegeria sp. TM1040]
MLHENAMEGLQKANILLVEDDDFEAKAVRRAFHKARIKNEIVRAVNGEEALAILENTHPHIHVPTPLIAL
IDINMPKMTGLELVEIIRSKPALQNLICFMLTTSRDPGDIHQAYSSHVAGYVVKETAGQDFTRLLSLLDD
YWITVELPDTPRH
>gi|99081057|ref|YP_613211.1| multi-sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MTSSARKSISAKVRKIAVIVAVAAVTSLTLASALVTRNLELQHANILTRETADKISRASADATAAIITDA
EILANMPPVAALIRAHYNNGIDPVSGDTTEEWKERLTTIFSSFHALRPNYLQIRFVGFADNAQEILRVDK
VGERIERVPDHRLQQKGNEPYVEAARTVPIGQAVPLPPSYNRENGIIQEPKTLMYRVLVPVLEPAGYKFE
GHRFGFIVINVDLLKHNQAAYKPLNLASSFVIHNSKGSSYVWDAEAQSGQYHGGMVVGLPEIVRTDLSRA
NAEQPLRLVNEGAEYITLKLESVSSATHSVFLTLIKERHFFSNILPFSTLNLIVLGLLLIFCSYAFARRG
IETALAPMQTMRGNILASAETGQDPVLPIHLEDEVGDLAQSFKGLITRLRSQESDARQVFDGTTDGMVLV
TSNGLIQQSNAAFGALFGPVVMGESTLTDYFASGDAQAIEAKVKLLASGNAGKHFAEAVLCRGKRDAKDG
SSNWFEVTLALLREAEQKLALVVIRDVTEREAMSKSQKDLIEQLNRSNKDLEEFAYVASHDLKAPLRAVS
HAATWLEEDLEEHLTEETTEHLHYMKSRILRMSGLLDDLLAHSKIGTRDFDPKSNIMSGLDLSHNIADLC
GSGQDTQLEFSQDFLAAQMNQMPLQVVLLNLVSNAFKHNDKAQGHVLVALKDQGDHFEISVKDNGPGIHP
KFQEAIFGLFRTLKSKDEVEGSGMGLAFVAKHLAVLGQSIKVISEGDGNGAEFVFTWPKPNLEEVQNVA
>gi|99081058|ref|YP_613212.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MTEKTTGLSRRALLKAFAATTVAAAPTYTQAAGFLRGGGDIRRIRMYSGRTGERLDMIYWIDGKYIKDAV
KEINHFMRDWRNDQVKAIDLRTIDIMAASSNLLEVNEPYLLLSGYRSPQTNAMLRSRSRGVAKNSLHMKG
QAADLRLSTRTVSQMAQAAQACKAGGVGRYYGSNFVHMDCGVVRSWRG
>gi|99081059|ref|YP_613213.1| peptidoglycan binding domain-containing protein [Ruegeria sp. TM1040]
MPLARAPKFASFVTGGILAAVLGTTLLFAEKAEAASTGFRQAVAEMAWEDEAVSSYYRQNQYAPLWTADT
PEATARRRALMQALEEASMHGLPDMSARAADLVEQMRNVRSTRDLGAVEVALSRALVDYATDLQTGLIDT
PVRIDEGIVREKHKVDATRFLEGIATDRPAAFLQDLVPTSSQYRALLREKMRLEALLQAGGWGATVPVRK
IEPGDTGQSVLALRNRLVSMGYLAPTATRSYDLDVEDAVRRFQSEHGLEVDGVAGEGTLKELNRPVSDRI
KSVLVAMERERWLTPERGLRHILVNLTDFSAKIMDEGEISFETRSVIGSTKSDRRTPEFSDEMDHMVINP
SWYVPRSIITKEYLPKLKNNPNAHSYIEITDNRGRVVNRNNVDFSQFTARSFPFAMRQPPSSRNALGLVK
FMFPNKYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENPKDYFHRVLNSGKETKVPL
ETKVPVHLIYRTAFVSQDGRAEFRRDVYGRDAKIWSALERAGVALPGVQG
>gi|99081060|ref|YP_613214.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Ruegeria sp. TM1040]
MFTVREIATALGAQAAGDLDLKITHASEPQDAGAEALAMAMSPQYGEALTQGNARAALVWEGADWQALGL
DAAIFVVRPRLAMSGVTRMMDRGQRLAAGIHPSAVIDPSAEIGADVTIGPLSVVGPDAKIGAGSLIGAHC
FIGADVTIGPEANLREMVSIGARVTIGARFRAQPGARIAADGFSYVTPETSGVENARKTLGDQGDTSAQS
WVRIHSLGSVRIGDDVEIGANCTIDNGTIRDTVIGNGTKLDNQVHVGHNCRIGNDCLLCGQTGLSGSVDI
GNNVVLGGQCGVADNLFIGDRVIAGGGTKILSNVPAGRVMMGYPAVKMDTHTEMYKAQRRLPRLMRDLDA
LKKAVFK
>gi|99081061|ref|YP_613215.1| phosphopantetheine-binding [Ruegeria sp. TM1040]
MSTQDKVIAIIAEQAVLEPSDVSLDSTLEDLGIDSLGLVESIFAIEEEFDISIPFNANEPEQSDFDISNV
AAIVTGIDKLIAEKG
>gi|99081062|ref|YP_613216.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Ruegeria sp. TM1040]
MKRVVITGAGTINALGHSVAETLESMREGRCGIGELDFRDVDRLAIKIGGQVQNFEAEGRFNRQQMVLYD
RFTQFTLVAASEAIRQSGLEFTGDLAARSGVVLGTAGGGVSTWDDNYRSVYEDGKNRVHPFVVPKLMNNA
AASHVSMEYNLKGPSFTVSTACASSNHAMAQAFQMVRSGMSPAMVTGGSESMLCFGGVKAWEGLRVMSKD
ACRPFSANRNGMVQGEGAGIFVFEEYEHAKARGAEILCEVIGYAMSSDAADIVMPSKQGAARAISGALRD
AQINASDVGYINAHGTGTAANDKTECAAVADVFGPHADNLMISSTKSMHGHLIGGTGAVELLACIMALRD
GVIAPTIGYEEADPECALDVVPNEAREAKVDVALSNAFAFGGLNAVLALRRV
>gi|99081063|ref|YP_613217.1| invasion associated locus B [Ruegeria sp. TM1040]
MLKSLSSVSLALLLAASPLVAQETTDQDTADQTAEESADAPTASADQLLDLGTPAEAALQVGQRYSKEKF
GDWDLACVRTQSGDDPCSLLQVLLDEEGGPVAEVSLFRIEQTGGQAVAGATVIAPLETLLPAGLTVSVDG
APGKRYNFSFCNTAGCIAQIGLTEADINAFKQGSQAIFSLRPAPAPDTTVSVPMSLKGFTAGYNAVDVVQ
Q
>gi|99081064|ref|YP_613218.1| protein of unknown function DUF853, NPT hydrolase putative [Ruegeria sp. TM1040]
MAEEIFVGGGGDAYGDPQYLTLKYANRHGLIAGATGTGKTVTLQILAESFSNEGVPVILADVKGDLSGLA
RAGSETAELHAPFVKRAQKIGFTSFSYHDTPVTFWDLFAQQGHPIRTTVAEMGPLLLSRLLELSEAQEGI
LNIAFRLADEQGLPLLDLKDLQALLVWVGENRESLSLRYGNVSTASIGAIQRRLLVLENQGGALIFGEPA
LDLEDLMRFDAAGRGMVNILAADKLMASPKLYATFLLWLLSELFESLPEVGDPEKPKLVFFFDEAHLLFE
DAPKALIDKVEQVARLIRSKGVGIYFVTQSPDDIPEDILGQLGNRIQHALRAFTARDQKKLKLAAETYRA
NPRFSTEDAIREVGVGEAVTSMLEKKAVPGVVERTLIRPPSSQLGPITEEFRRSVMQASDMAGKYDKSVD
RHSAYEILKERADKASREAADAEAQAETAPDPVVREFSAARRYSGSRVGRSTSRRIGGGDTFASAMSESV
IKELKGTTGRRIVRGILGGLFKGR
>gi|99081065|ref|YP_613219.1| inosine-5'-monophosphate dehydrogenase [Ruegeria sp. TM1040]
MQIREALTFDDVLLVPAASSVLPNTADTRTRVTRAISLNIPLLSSAMDTVTESRMAITMAQAGGMGVIHK
NLDIEEQARQVRRVKRFESGIVYNPITLRADQTLADAKALQERYRVTGFPVVDDSGRVVGIVTNRDMRFA
SDDKTPVSVMMTSDNLAMLQEPAERDEAISLMKARRIEKLLVTDKDGKLTGLLTLKDTEQAVLNPTAVKD
DLGRLRVAAASSVGDSGFERSEALIDAGVDVVVVDTAHGHSAGVIEAVTRIKALSSDVQVIAGNVATAAA
TRALIDAGADAVKVGIGPGSICTTRMVAGVGVPQLTAIMDCASAAGDTPVIADGGIKFSGDFAKAIAAGA
SCAMVGSMIAGTDESPGEVILYQGRSFKSYRGMGSMGAMARGSADRYFQKDAASDKLVPEGIEGQVPYKG
AAGAVIHQLVGGLRAAMGYTGCATVDDMRTSCEFVRITGAGLKESHVHDVQITRESPNYRIG
>gi|99081066|ref|YP_613220.1| L-carnitine dehydratase/bile acid-inducible protein F [Ruegeria sp. TM1040]
MLAPLDGLIILDLTHVLAGPYASMTLSDLGARVIKVERPGVGDDTRAFPPFKDGESAYFATINHGKESIA
LDLKNAKDRIVFEELLQKSDVVLENYRPGVMERLGYGWDDLHPKYPKLIYGAVSGFGHSGPDSQRPAYDM
VVQARGGVMSITGERDREPVRVGASIGDIAAGMFLAQGILAALLQREKTGEGQKIDIAMLDCQLAMLEHA
IALTTISGEAPRPSGARHPSITPFETFHAADGLFVIAAGNDVLFARLCEALELPIAQDERFATNPARCEN
ARLLKRLIEAVTLEHGKRHWIDLLTKAGVPTGPIQNVAEVLEDPQIRARNMVVDVLDRDGNPAYVAAGNP
IKMSALKDPSTRPAAPKLDENREEILTWLREA
>gi|99081067|ref|YP_613221.1| ferredoxin [Ruegeria sp. TM1040]
MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSKCQITPSYGEF
SKHGVTVADDALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPAESQVHKQVVRKRAEARDIVM
NPSIRLYYVEVEEPDMHKPTGDLERLCEGLEKQWNIKGVKADFEVLRELQPTLRKGGWTVTVAVQLGTET
APARIMQIWPGYYEGTVYGLAVDLGSTTIAAHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKG
GDLEMTRAVREGMNALFSQISEEAQIDQGLIMDAVFVCNPVMHHLFLGIDPFELGQAPFALATSDALALQ
ARDLDLKLHRAARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVGTNAEILLGNKDKVLACSSPT
GPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGICGSGIIEAIA
EMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVTNPDIRAIQMAKAALYSGARL
LMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLDKVTSAGNAAGTGARIALLNTDARQEIEDTV
RKIEKVETAVEPRFQEHFVNASAIPNSAEPFPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG
>gi|99081068|ref|YP_613222.1| Fmu (Sun) [Ruegeria sp. TM1040]
MTPGARVQAAIEILDEILAGQAVEKTLTNWARRSRFAGSKDRAAVRDHVYQALRCRRSYAVLGGSETGRG
LMLGACKDQGLDQAVLFHGEGHAPSPLSAAEQSIAPEFHSDAERHDIPEWLWPVFSRSLGTEAIAAATAL
RSRAAVHLRVNLLKGDRDNAIKRLTREGIATEPHPASPTALTVTEGARRIKNAESYLQGFVELQDAASQA
VVDKLPVQNAPRILDYCSGGGGKALAIAAQTQAEVYAHDADPRRMRDIPERAMRAGADIRCLTSEELVTQ
APFDLVLCDAPCSGSGSWRRDPEGKWRLTQDTLDDTVALQARILDEAAQRVAPGGVLAFATCSMLDVENS
LQTQRFQERHTGWAHLSETAWHVHSGTDGFYVSVFRRNGTE
>gi|99081069|ref|YP_613223.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MIGRSSSIAPSLKIQTPEQARLAATFLLSALLIVLPWLLPVPEWIGRALVAVGLTLGGVSAMILIQTRVR
MGARTMASELLTGFIDKDASASFVTDEDGVIHACNTAALKRFEGSESDTISGTLRSVLANPSAVLFRLQS
RAKLEGSAREDIVTRRGNVRIAVHEMANGSFLWRVEDMGERPSGRTADASPVPMISVGRTGAVLFMNESA
RSLIGERVKSTDRLFTSLPVIPGRINTIMTKSGPVEVLVSEHARGQGRSEIYFMKAVVEDSGPHTGFESL
PVPLLKVRAGGEVMAVNRMAMRLLGIEEAEGVQLGQLMEGLGRPMNDWLQETSKGLAPHKSEFLRVSRDD
KEVFVQVTLTRIIEDGETLLLAVLNDATELKTLEAQFVQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDL
LLLRHDQGDQDYGDLIQIHENANRAAALVSQLLAFSRKQTLQPEVLDVRETLSDLTHLLNRLVGEKVSLT
LSHDPVMRSIRADKRQLEQVLMNLVVNARDAMPHGGEIRVETEVVALDTALERDRALVPPGEWVTIQVSD
EGTGISPDKLQKVFEPFYTTKRTGEGTGLGLSTAYGIIKQTGGFIFVDSVLNQGTKFTLYFPVYRSDASH
DVEEAVAPAKTKAPAAQHGEGVVLLVEDEAPVRAFASRALRMRGYTVLEAESAEEALDTLEDPNLSVDVF
VTDVIMPGMDGPTWVREALKTRPGTKVVFVSGYSEGAFGDAEPDVPNSVFLAKPFSLSQLTETVQSQLQ
>gi|99081070|ref|YP_613224.1| hypothetical protein TM1040_1229 [Ruegeria sp. TM1040]
MWLRIGLQSEDSLNYCRSFNVMMVFYCARLVLLSVPKTGTTALQSALRPHADLVISDPPELKHAPLYRYN
RWIRPMFEKVCDAELEVAAIMREPISWLGSWYRFRQRPHLDGQPASTKDLSFDEFVTDYCRGKRPAHANV
GSQAKFLESQPNGCRVTHLFAYEDLAPFHAFLRDRTGLSYETQPENVSPKGDLTLSAATEQKFRRKHPEE
FELYQSITT
>gi|99081071|ref|YP_613225.1| recombinase A [Ruegeria sp. TM1040]
MADLLTMKDDKKSGDKQKALDSALAQIERQFGKGSIMKLGDGTALQEIEASSTGSLGLDIALGIGGLPMG
RIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQPDTGEQALEIT
DTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSISRSKCMVIFINQIRMKI
GVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGIS
KMGELLDLGVAAGVVNKSGAWFSYGDERIGQGRENAKGYLRENSRIALEIEDKIRAAHGLDFDMPPEAQD
DDVLFEG
>gi|99081072|ref|YP_613226.1| hypothetical protein TM1040_1231 [Ruegeria sp. TM1040]
MHVTAEELDAALPHVMAAPKDRAAISMLCLRPGYNQRHFVDEITVTPEGGIPGERWSSRPWLQLDDGSAH
PGIQVCILSKRVLDLVWRHREEVPHPGDTFIVDMDLSEENLPVGQLLQVGSALLRVSDVFNDGCVKWKTR
YGVAAKDWVNRPENRALRLRGILCSVAQAGRFQSGDLMIKKQ
>gi|99081073|ref|YP_613227.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040]
MGAINRFGLFQSHLESRVDMPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFT
GVDRRDYVRATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDIP
KDKLYTTVYHTDDEAFEIWKKVGVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPE
EDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQGTHDNYETDLFKYLIEASATVTK
SEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGYVLRRIMRRAMRHASLLGATDPVMHKLVPALVS
QMGAAYPELGQGQALIEETFEQEETRFLKTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLT
QDALRAKGIEVDTDGFDAAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYETEKAEGQIVAL
VKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGGAARITDTKKVEGLFLHIAEVTEGEIA
VGSGAAMEVDHVRRSQIRANHSATHLLHEALRNALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKIS
AEVNDFIRQNSAVSTRIMTPDDARALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVK
QTGDIGTFVILGDSASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKAL
QNEIATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLIAEDDGKV
AVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEAIKAAEALLKG
>gi|99081074|ref|YP_613228.1| hypothetical protein TM1040_1233 [Ruegeria sp. TM1040]
MPALWIAHVTVTDADAYGKYAELAGPAIAKHGGEFIARGGRFVQLEGKERPRNVVAKFPSVEAAVDCYNS
PEYQEALSHARDASERELMVVETSA
>gi|99081075|ref|YP_613229.1| glutamine amidotransferase, class-II [Ruegeria sp. TM1040]
MCRWAAYIGPPVHLDEVVCKPEHSLVAQSVHAFECKTQTNADGFGIAWYDSREEPGLYRDTHPAWSDPNL
KSITHQVRSGLFLAHVRASTGTATSRNNCHPFTHGCWSFMHNGQVGGFENFRRRADMIIPDELYSARKGA
TDSEALFLIAIAEGLYEDPKGAMQRAVGRLEALSREFGHTPHMRIGAAFSCGGALYAVRYASDHLAPTVY
SSKSADGTGRLVVSEPLHKGECWEAVPAGSFCRFTADDTEIEDFVPQF
>gi|99081076|ref|YP_613230.1| GTP-binding protein TypA [Ruegeria sp. TM1040]
MDLRNIAIIAHVDHGKTTLVDELLKQSGAFRENQAVAERAMDSNDLERERGITILAKATSVEWNGTRINI
VDTPGHADFGGEVERILSMVDGVVLLVDAAEGPMPQTKFVTSKALALGLRPIVVLNKVDKPDAEPDRALD
ECFDLFANLGADDDQLDFPSMYASGRSGWADMELDGPRKDLSALFDLIVKHVPAPKQIAQKDEPFRMLAT
TLGSDPFMGRILTGRVESGTLKVGDSLKALTREGELIENFRATKILAFRGLAQQPIDLAEAGDIVTIAGM
AKATVADSLVDTSVTEALPAQPIDPPTITVTFGINDSPLAGRDGKKVQSRVIRDRLLKEAELNVAIEVTD
TPGGEAFEVAGRGELQMGVLIENMRREGFELSISRPQVLFKEENGQRMEPVEEATIDVDDEYSGVVIEKL
TGNRKGELVEMKPAGAGKTRIIAHVPSRGLIGYHGEFLTDTRGTGVLNRVFHGWTPHKGAIPGRRAGVLI
SMENGQSVAYALWNLEERGKMFIGAQADVYTGMIIGEHSRDNDLEVNPLKGKKLTNVRASGSDDAVRLTT
PVTLSLEEAIAYINDDELVEVTPNSVRLRKRYLDPHERKRMAKANS
>gi|99081077|ref|YP_613231.1| small multidrug resistance protein [Ruegeria sp. TM1040]
MHYLYLMAAVLAETIGTTALQASQQFTRLLPSVIVVVAYGLSFFLMSLTLKVMPVGIVYAIWSGLGIVLI
ATIGFLVFGQRIDLPAIAGMALIITGILVIHLFSSSSGH
>gi|99081078|ref|YP_613232.1| HD domain-containing protein [Ruegeria sp. TM1040]
MTTDLEQQFEFLTEIERLREVERQNLLLDGSRVENSAEHSWHLALYALVFAPYAPSDVSITRVIEMLLLH
DIVEIDVGDHPIDEPTDWEAVAQAEDRAQRRIFGLLPEAQGHRLQALWQEFEAAHTADARFAKSLDYCQP
IFQTLCAVSPPADHLRVVRENLTTGRATSLRERFPEAYAAACSLIDGQTVSDPDFAARLAFLSEADRLKS
VLRASRIASGTRYENSAEHSWHIMLYGWILAPHSLSEVDVSRVLKMLLLHDLVEIDAGDVPIHSNLDAAA
LRQIEETEKAAAERIFGLLPDAQAKDCLMIWQEFEAAQSADAVFAKSIDRVQPVLLNIATGGGSWVAYDV
TLPQLETRVGVKIARGAPKVWDHVRALLLPWFTAQGRL
>gi|99081079|ref|YP_613233.1| hypothetical protein TM1040_1238 [Ruegeria sp. TM1040]
MGTLDTLAAKLAEDTLKVQDALGEDRIYMEIAQVLGAASQSLEEAFLTEVRIRLAERKARDFLSKRLEAA
KAALEAEAKKHQ
>gi|99081080|ref|YP_613234.1| hypothetical protein TM1040_1239 [Ruegeria sp. TM1040]
MPEVIFPGPEGRLEGRYHPQKEKDAPIAIVLHPHPQFGGTMNNKVVYNLHYAFYNMGFTVLRFNFRGVGR
SQGEYDQGVGELSDAASALDYLQSMNNNSKHCWVAGFSFGAWIGMQLLMRRPEITGFISVAPPANMYDFS
FLAPCPSSGLIINGTADRVAPPADTVGLVNKLHEQKGITITHEEVEGADHFFQEPHMDTMIGSVTDYVKR
RLTENTR
>gi|99081081|ref|YP_613235.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040]
MKLSTKGRYAMVALADIALQPSEGLVVLADISKRQQISLPYLEQLFVKLRRGGLVASVRGPGGGYRLARP
ASEIRVVEILAAVDETVDAMHKGAGASGGSSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDVIENDLAPC
PAVPNLFSVVDE
>gi|99081082|ref|YP_613236.1| aminotransferase, class V [Ruegeria sp. TM1040]
MTRVYLDHNATSPLRHDARAAMIAAMDVCGNPSSVHAEGRAAKAVVERARAQIAAAFGADGADIVFTSGS
TEGAALALMGRDLHGSALEHDAVRAWIKEDLTVEAQGRVAVLDPQSSCLQLANSETGVIQDLPEGLAVTD
ATQAFGKLPVAFNWMGATMALISAHKLGGPKGVGAVVLKRGTDLAAQIKGGGQEMGRRSGTENVIGIAGF
GAAAEAAAKDLDNGVWDRVAEIRNILEKAVAAQCPGTIFIGNEARRLPNTSCFATPGWKGETQVMQMDLA
GFAISAGSACSSGKVRASAVLTAMGFDEKTAQGAIRVSLGADTTETDVLRFAETWCAKQKKHRARSA
>gi|99081083|ref|YP_613237.1| cysteine desulfurase activator complex subunit SufB [Ruegeria sp. TM1040]
MAALDQFEAKEGVDQETVDAVREVSTYKYGWDTDIEMEYAPKGVNQDIVRLISEKNEEPEWMTEWRLQAF
ERWEGMKEPNWAMVNYPEIDFQNQYYYARPKSMEVKPKSLDEVDPKLLATYEKLGIPLKEQMILAGVEGA
EDAPAEGRKVAVDAVFDSVSVGTTFQDELKKAGVIFCSISEAIREHPELVKKYLGSVVPVSDNFYATLNS
AVFSDGSFVYVPPGVRCPMELSTYFRINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDTAQLHAAVVE
IIIEEDAEVKYSTVQNWFPGDENGKGGIYNFVTKRADCRGDRSKVMWTQVETGSAVTWKYPSCILRGNES
QGEFYSIAIANNMQQADTGTKMIHLGKDTKSRIVSKGISAGKAQNTYRGLVSMHPKAKNSRNYTQCDSLL
IGDKCGAHTVPYIEVKNNSSRCEHEATTSKVDDDQLFYCRQRGMDEEEAVALVVNGFCKDVLQALPMEFA
MEAQQLVAISLEGSVG
>gi|99081084|ref|YP_613238.1| hypothetical protein TM1040_1243 [Ruegeria sp. TM1040]
MIVTTTNSVEGYQISEYKGIVVGEAIMGANVVRDVFAQITDIVGGRSGAYESKLQDARETALSELEDRAR
ALGANAVVGVDLDYEVVGQSMLMVSASGTAVVIG
>gi|99081085|ref|YP_613239.1| methyltransferase FkbM [Ruegeria sp. TM1040]
MLFDPSKLPDIVARISSGQSVGFADVSLYTSEIHGRRMVFSVDMQRDPIQRSHREGHFYEEEELSVIKSL
FPLGGTFVDIGANVGNHGLYAAAFLSAARVIPFEPNPKALKLLLANISANGLAPKYDLSHLGKGLGDAPR
AGFGMEARDRNLGAAKMLAGEGDIEITTGDLALQDEQVDFIKIDVEGMEILVLSGLQDTIKRCRPALLVE
VDRENDAAFHALIEQMGYGVFDTLQRYNRNKNYVIKPLQLDAES
>gi|99081086|ref|YP_613240.1| FeS assembly ATPase SufC [Ruegeria sp. TM1040]
MLEIKNLHVKLEDEDKQILKGVNLTVEAGKVHAIMGPNGSGKSTLSYVLSGKDGYEVTEGSASLLGEELL
ELEPEERAALGVFLAFQYPVEIPGVGNMTFLRTAVNAQRKARGEEELSATDFLKHVRAQAKELKIDADML
KRPVNVGFSGGEKKRNEILQMAMLEPKMCILDETDSGLDVDAMKLVADGVNALRDEGRGFLVITHYQRLL
DHIKPDVVHIMADGRIVKTGGPELALEVENNGYADILSEVA
>gi|99081087|ref|YP_613241.1| SufBD [Ruegeria sp. TM1040]
MGLPELKQTTTEARLAALSLPEGGCLEAARRAAVARVQTMGLPDRRDEYWKYTRPDTLTAADAPAAAVFD
SGEAPMFDNFDRLRIVFVDGVFDAEASDDLALEGVSIERLADIDRKDIHWAKDIYGVLEARGQSPVERPL
AALNTAFATDGVVIHVTGKPSKPINLVYQHASENSDAILHHVIKVDSGAEATILENGPAASRFNKAMEID
IADTGKLHLVRAQGRDHERRAATHLFARLGTESVFKSFTLTVNGVLTRNEAVVEFLGDDAVAHLAGACVG
DGDFHHDDTVFVTHDAVNCESRQVFKKVLRNGATGVFQGKILVKEGAQKTDGYQISQSLLLDDDSQFLAK
PELEIYADDVACSHGSTSGAIDEDGLFYLRSRGVPEAEATDLMTLAFLAEAVEEIEDEEIAASINDRLYG
WLARRR
>gi|99081088|ref|YP_613242.1| hypothetical protein TM1040_1247 [Ruegeria sp. TM1040]
MAVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQELNMLLGGALM
GIIFIAPLALYALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLLNGLVAGFIGPSPALSSVGLL
WLAVFLWFWISGLIEAYWGKN
>gi|99081089|ref|YP_613243.1| hypothetical protein TM1040_1248 [Ruegeria sp. TM1040]
MNFKDLLVETIVNPASAARRIMALNLTDEVVWTGFALNVVLSVLLYAGQGVLLGDPSNALFPGLSPALFG
AFLVVLQLSYTAASMVAARWMGGDAEFGTILGLLVWLRIVNIVVQVIAIAMVFVIAPLAVLFNFAAALYG
LYVLAHFTKEGFGLSSLGKSAGVILLAGLGAMIAVLILMGLFAPTILETSNV
>gi|99081090|ref|YP_613244.1| cysteine desulfurase [Ruegeria sp. TM1040]
MYDVEKIRSDFPILSREVNGKPLVYLDNGASAQKPQVVIDAVTKAYAEEYSNVHRGLHYLSNLATEKYES
VRGIIAKFLNAGHEDHIVLNSGTTEGINLVAYSWAMPRMEAGDEIILSVMEHHANIVPWHFLRERQGVVI
KWIDTDADGSLDPQKVLDAITPKTKLIAVTQCSNVLGTVVDVKSITKGAHDKGVPVLVDGSQGAVHMPVD
VQDLDCDFYAVTGHKLYGPSGSGAIYIKPERMAEMRPFIGGGDMIKEVSKDQVIYNDPPMKFEAGTPGIV
QTIGFGVALEYMMEIGMAEIAAHEADLRDYASERFKGLNWLNIQGHAPGKAAIFSLTLEGAAHAHDISTI
LDKKGVAVRAGHHCAGPLMDHLGVSATCRASFGMYNTRPEVDTLIEALELAHELFG
>gi|99081091|ref|YP_613245.1| hypothetical protein TM1040_1250 [Ruegeria sp. TM1040]
MTKHVLCAIDLTHMDAEETLLKRAAELAEFYGATLSVVTVVPDYGMSIVGSFFKDGTMKEAVKEADRQLH
AYVKKVVPDMKDVQHIVEVGANVYEMILDAIKRSEADLVVMGAHKPELMDRLQGPNSARVARYAPCSVLI
VRD
>gi|99081092|ref|YP_613246.1| TRAP transporter, 4TM/12TM fusion protein [Ruegeria sp. TM1040]
MTDNQSATAQEDRSLEDFVADSDTGGRLPQDALGRNALWYLPLVWSLYQLWIASPLPFILGVGVWNDTQT
RAIHLGFAVLLAFIAFPGLKSSPRHHIPIPTWIIGAVGALCASYLFYAYSGVAARSGAPNQTDVIVSIVG
LVLLLEAARRSLGFPLMGVALFFLAYVFFGSSPWLPEVVQWKGASINKAMSHMWLTTEGVFGVALGVSSG
FVFLFVLFGALLNQAGAGNYFLKLAFAALGHLRGGPAKAAVIGSAATGLISGSSIANVVTTGTFTIPLMK
RVGFPATKAGAIEVSSSINGVLTPPVMGAVAFLMTEYVGIPYVEVVKTAIIPAAISYIALIYIVHLEALK
MGMKGSSRMHPVKFFLGAIFTISISILIGGGTLWLCGVLVNALESIAGGATTWLIVVIMAVLYVLALKVA
AAQEDLEISIESMQNLPPTREIFKTGIHYIMPILLLMYLLMIERKSPGLSAFWSSVAMLVILATQNPIKA
MFRGQDTAIADFKQGIADIFEGLIIGARNMIGLACAMGVAGIIVGAVTLTGIGQVMAEFVEFLSGGSVML
MLIFVALISIVLGMGLPTTANYIVVSSLMAGVVVELGAQNGLIVPLVAVHMFVFYFGIMADVTPPVGLAS
FAAAAISKGDPLRTGFQAFFYSIRTALLPFLFIFNTDLLLIDVGPIQAIFVFIVAMIAMLLFAASTMNYF
IVKSKIWESVLLLLVAFTLFRPGFFLDQLQPAFETRPGSAVYEMAEAVEDGGTLRVRLVGESLEGDMVDA
RFLLPLGEKGADGQTRLYDGAGIEFRDEDGKIYVDNLNFGGPAEQLGIDFDWELVEMEVEADRLPKEVFY
LPAFLILGFVVFLQMGRKRKEEGVA
>gi|99081093|ref|YP_613247.1| TRAP transporter solute receptor TAXI family protein [Ruegeria sp. TM1040]
MVLKHTLLASAATVALGFAGAASAAEQQFITIGTGGVTGVYYPTGGAICRLVNKDRKEHGIRCSVESTGG
SVYNTRTIREGELEFGVVQSDVQKAGLDGTGAFEADGPFEGLRALFSVHPEPMHLMARKDAEIASVDDLK
GKKVNIANPGSGTRVLAETLMKYSGLTTDDFALAAELKSSEQAAALCDGKIDATIWASGLPNGSSQEATS
SCDVNIVPLSGENIDTLLAENTPYAAATIPGGMYPGNPDDIPSWGPKATFVTSADVSDEVVYAVVSAVFE
NFDDFKKLHPAFSRLSEEEMVSDALSAEIHPGAMKYYKERGWK
>gi|99081094|ref|YP_613248.1| RpiR family transcriptional regulator [Ruegeria sp. TM1040]
MDPTLRNKTITRLKEELSDLSPRLQVAAKYIVDHPADFGLDSIRDTARKAEVSTYTLVRISERLGFDSYE
DMRDPFRVALVAPTQFVDAPEWINRWRESGELGQKQAEAALNSMAIVQRSLEGQNLRQLQRVAEMLLGAK
NVYLTAVRASYSIAYYFHYVGRMALPSLQLIPRHINSAIDELNYADEGDVMIAITLTPYSRETIEACEFA
RKKGVKLVMISDSEVISSKFTPEETLVASTLSTHHFGCYTGVMAVAENLVSLLVALGGQDVKDRITSYET
LRKDNNAYWVAKKKH
>gi|99081095|ref|YP_613249.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MPKDLPAHASVVVIGGGIMGCSTLYHLAKMGAHDAILLERNQLTSGTTWHSAAQVRALRHSRNLTRMIQY
SVELYSQLERETGQSVGWIQKGSLSLATNPDRLVHIQRQEALAHAYGIEATSISPQEAKERWPLMNADDV
LGAVWSPDDGRVSPSDVCAALVKGAKSLGARLFEQTGVTGILTENGRVKGVETSRGVVMCDAIALCAGLW
SREIGAMAGAEVPALACEHFYLLTKPIDGIQGNTPTLSDHDNHLYIRDDSGGLLVGCFEPMGKAIAPGRL
DESFEFGLLPEDWDHFEPMMLNALHRLPALETAEVKMLLNGPESFTPDGTFMLGETAETRGLFLGCGMNS
VGIASGGGAGMNLAHAILHGAPAYDLSEADAKRFAPVFNSLDHLMARAPEILGTHYEIAYPDRQLSTARN
LRPLPVHAAHVSSAAHFGQVYGWERPLYFGRTAEPRLRFERPDWFSNVANEVKAAHTRAAVFDASSFGKI
DVTGPDSEAFLLHVCSGHMARAPGSVIYTAMLNEHGRFESDITVHRLATDHYRLFVGTAAIKRDMAWLLR
HSREFDVKICDTTEDFATFGLMGPEAMRIARDLGAAELASLGYFKHGEAMIAGHPVRAARLSYVGEAGWE
ITCKTTSAQEVYTALLDAGATPAGLYAQTSMRIEKGFCAMGHELDSDVSPLEVGLGFALRKSGGFIGAQA
LEEMKKKSLNHQIVSLLFEEVDVVPLGHEPVSARGDIIGHTTSCAFGYRIGRPVALAFCKAGLETGHEVE
VNIAGRRATARVQIGPVFDPEGLRMRDIG
>gi|99081096|ref|YP_613250.1| acyl-CoA dehydrogenase-like [Ruegeria sp. TM1040]
MLDDKPTLRAKDAPDLGRFAWDDPLRLSDQLTEDERMIEASARAYAQEKLQSRVTEAYETEQTDPEIFRE
MGEMGLLGTTIPEEYGGLGGGYVSYGLVAREVERVDSGYRSMMSVQSSLVMYPIYAYGSEEQRQKYLPKL
ASGEWIGCFGLTEPDAGSDPAGMKTRAEKTADGYRLTGSKMWISNAPIADVFVVWAKSEAHGGKIRGFVL
DKGTKGLSAPKIQQKMSLRASITGEIVLDGVEVGEEALLPHVEGLKGPFGCLNRARYGISWGVMGAAEAC
WHAARQYGLDRHQFGRPLANTQLFQLKLANMQTEIALGLQASLRVGRLMDEANAAPEMISIVKRNNCGKA
LEIARHARDMHGGNGISLEFQVIRHMMNLETVNTYEGTHDVHALILGRAQTGLQAFF
>gi|99081097|ref|YP_613251.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MYDKKSYMSVPRRFLPSIASLRALEAVDRLGSASAAAVELSLTQGAVSRQLQALERQLGIELVLRDGKAL
SLTPDATDYAQEVRHALDRIAQATLQVQSVPLAGSLNLAILPAFGMRWLMPRLPAFSRRHPDVTINMSTR
LSPFNFATQSFDAALHFGHADWPGTDSLLLKHEQLLPVCAPELVKRAKVDAPGDILALPLLHIQTRPTAW
ADWFQRQQVPTSGTLGGSMYDQFSTINQAALHGLGVALMPDYLVEQDLATGRLVSLHPVPEDIGGAYYLV
WPTSKSRHSGLQKFRDWLAEQAQPEDPLPR
>gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MAVDQPTVLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEICRR
LKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRPATVGMRLEFDDI
ILDAETHKVSRSEHPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWGRDIYVDTRTVDVHIGRLRKALT
QHGGDDPVRTVRGAGYALG
>gi|99081099|ref|YP_613253.1| phosphate uptake regulator, PhoU [Ruegeria sp. TM1040]
MVEQHIASAFDRDLEAIQARIMKMGGLVEAAIMEGARALETRDEELAAKVVQDDKAIDGLEELINEDAAR
VIAIRAPAAVDLRVVLSVIKISGHLERVGDYAKNMAKRTSVLAQSPSVADSAAALRRMAREVELMLRDAL
DSYIQRDDELARDVIQRDRDVDQMYNALFREFLTHMMEDPRNISSCMHLHFIAKNIERMGDHVTAIAEQV
VYLVTGNKPEEERTKADNTSVTMQEI
>gi|99081100|ref|YP_613254.1| phosphate ABC transporter permease [Ruegeria sp. TM1040]
MNDMTAMDSTVETQRTKIAAKGVNVYYGDSHAIKDVNVEIEDKTVTAFIGPSGCGKSTFLRCLNRMNDTI
DICRVTGDILLEGEDIYDKRVDPVQLRAQVGMVFQKPNPFPKSIYDNVAYGPRIHGLAKNKAELDEIVEK
SLRRGAIWDEVKDRLHAPGTGLSGGQQQRLCIARAVATEPEVLLMDEPCSALDPIATAQVEELIDELREN
YSVVIVTHSMQQAARVSQKTAFFHLGNLVEFGPTGQIFTNPEDPRTESYITGRIG
>gi|99081101|ref|YP_613255.1| phosphate ABC transporter permease [Ruegeria sp. TM1040]
MTDLSQNPSSGDAPMSRKPGTSLLELSDRTKRRNAAETRFKAYGIAAIAVGLLMLVVLVTTIVSKGTGAF
QQTFITLPVELLESKLDKNGNRDIEDIKKVTTFGYAPIIRNAVEAKVTDLGVETSLKAKDMAGLLSKNAA
ATLREFVIANPDQIGTTVEFRFLAQSRVDGYLKGRVSRDSIENDKNISVEQLDLVDALVAANVIEKTFNL
DFILGSDASDARPEAAGMGVSMLGSLFMMFVVLALALPIGVAASIYLEEFAPQNWITDIIEVNISNLAAV
PSIVFGILGLAVFINYMHLPTSAPLVGGLVLTLMTLPTIIISTRASLKAVPPSIRDAALGVGASKMQAVF
HHVLPLAAPGILTGTIIGLAQALGETAPLLLIGMVGFIASNAPDSIASGLLSPNSAMPAQIYEWAKRADP
AFYERAWGGIIILLVFLITMNTLAVILRRRFERRW
>gi|99081102|ref|YP_613256.1| phosphate ABC transporter permease [Ruegeria sp. TM1040]
MPTLWLILGLIALSVAGFFLGRNRALVSADGNPKDLHSLPSYYGHNVALSALVPALVLLAVWLLAQPMII
DKRVSGMIPDAAISEGSTLSLVMSDVRRVAEGLDIAVAQGAMTQAQSDDLSSGTTDVRAVLGDVGVALGS
DVRPEVLSAAQTYRALSSTGHLSMWVSVVLVALGGFGWSYGRTHKDFRARNVVEQGIMALLILAASLAIL
TTIGIVLSMLFETRNFFALHSWTDFFFGDTWAPNFRGDSDLSILPLLWGTLYISFIALMVAVPIGLFAAI
YLSEYASKTTRSFAKPLLEILAGIPTIVYGLFALLTVGPALVRFFGQGENGVLGVEWMSGATSVLTAGVV
MGIMLIPFVSSLSDDIINAVPQAMRDGSLGLGATKSETVRQVVMPAALPGIVGAILLAASRAIGETMIVV
MGAGAIAKFSLNPLDSMTTITTRIVSQLTGDTDFASPETLVAFALGLTLFVLTLGLNVLALYIVRRYREQ
YD
>gi|99081103|ref|YP_613257.1| phosphate ABC transporter, periplasmic phosphate-binding protein [Ruegeria sp. TM1040]
MSFVKLTASTLAIAAVSATAASAREQVQVAGSSTVLPYASIVAEAFGENFDFPTPVVESGGSSAGLKRFC
EGVGENTIDIANASRAIKEKEIKACAEAGVTDIIEVRIGYDGIVFASDIDGNGFEFTPTDWFLALSDKVV
VDGALVDNPNKTWADVNAAFPAQPIQAFIPGTKHGTREVFEDKVILAGCEETGAFDLLKEANGGDKKAAE
KACIALRTDGVSVDIDGDYTETLARIDSNKDGIGVFGLAFYENNTDKLQVATMSGVVPSTESIATGEYPV
SRPLYFYVKKAHIGVIPGLKEFAEFFVADEVAGPDGPLAEYGLVADPELAKTQEAVAAEATMGGNS
>gi|99081104|ref|YP_613258.1| histidine kinase [Ruegeria sp. TM1040]
MSQELIDGLLAAFPMPAVLIDQTERLIAANVEGATLLGPQVIGRHFATILRQPNVTTAIEACLLDRKPRT
ARHLSNDGAQDTTFEVTLRYVPGVGAVNGGAVLLCFDDITDREQASQMRRDFVANVSHELRTPLTALMGF
IETLRGAARNDAAARDRFLEIMEGEASRMNRLVGDLLSLNRVESEERVRPKERIDLLAHLQSTIKSLAPL
AESGGTQLTLDAPAGAVEIPADPDQLQQVFTNLIENALKYGGDNVTVSLMALERDPALRCPAVRVQVIDD
GPGIDPVHLPRLTERFYRADNHRSRELGGTGLGLAIVKHIINRHRGRLRVESDLGKGATFTVILPQ
>gi|99081105|ref|YP_613259.1| cystathionine gamma-synthase [Ruegeria sp. TM1040]
MKNSRPSVMRPHGLPDSASHPVVTPLSPSVVYASETPDALDDQYEGRVHGYTYSREGHPNADVIARRLDD
MEGASGGVVCGSGMAAVSAVLLGLLQTGDHVIGGDQLYGRSLRLMKEDLPRLGIATTLANPGDVAAIRAA
IRPETKLILVEAVSNPTLAVADIDGLAALCREHGILLAVDNTFTTPRAFKPFEHGADIVIHSVTKLLAGH
SDVMLGYVVAKDPALNDRMRVFSVTTGMTPSPFDCWLAERGLLSFDLRFDRAEATAARLADHIATLPGIK
RVIYPTRKDHPDHARAEALLKGRGCNMVSFELDGGREAANAFTRAAEGLSFAPTLGDVGTTLSHPASSSH
RALTAENRAELGLHEGFFRVSVGLEDPEALCAIFENAITSAMS
>gi|99081106|ref|YP_613260.1| hexapaptide repeat-containing transferase [Ruegeria sp. TM1040]
MTLYALGEDRPQIHADTWVAPDANLIGKVVLEEGASVWFGVTIRADHEEIRVGRGTNVQENVVMHIDAGY
PLTIGANCTIGHKVMLHGCTIGDNSLIGMGATILNGAKIGKNCLIGAGALITENKEIPDNSLVMGAPGKV
VREVDDALVAKLTASAIHYQDNMRRFKKDLKEI
>gi|99081107|ref|YP_613261.1| guanylate kinase [Ruegeria sp. TM1040]
MAHSKAQRRGLLIILSSPSGAGKSTLAKRLRAWDSDISFSVSATTRKPRPGEVDGQDYHFVTVESFKQDV
ANGDMLEHAHVFGNFYGSPKGPVQTAINEGRDVLFDIDWQGAQQITNSDLGKHTLSIFLLPPSITELRRR
LESRGQDDAETISRRMQKSWDEISHWGSYDHVLINEDLDETEEALKTIITATRLRRIQQPSLIEHARALQ
QEFEDLS
>gi|99081108|ref|YP_613262.1| hypothetical protein TM1040_1267 [Ruegeria sp. TM1040]
MVLHSMTGFASGQGGEGALAWIWDIRSVNAKGLDVRVRVPDWLEGLENEIKKRATKSLGRGNVTIGLRLS
RADDGKGELQINAAAMTAALAAIQQTQAAATEAGLDLTPVRATDILQIRGVLEQVSHEAKTEDLVTQLLS
EFDSLLADFINMRSNEGAALEVVLSAQLERIESLSQEAAQRAAARDPLIKEALRANLARVLDQSDGADPD
RVAQELAMIAVKADVTEELDRLKAHIAAARKLLGQGGLVGRKLDFLMQEFNREANTLCSKAQNAALTEVG
LELKTVIDQMREQVQNIE
>gi|99081109|ref|YP_613263.1| hypothetical protein TM1040_1268 [Ruegeria sp. TM1040]
MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGLENILSQTFIL
ERVAPGIARFRLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMFDDPSILEFELHTQATRLRGS
RTAKMILLPLRSDLGDVSRALGVMVSEGAASRVSQRFLVDSCDIRKITKASESKTAPEFKAAPRVSEPQM
QGQSQRDLTNKPVSTGGFSEPRTGFERKSPSLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTL
ETVSTTDVEKLVSRPPRGGKLKKGASHLRLVVSRD
>gi|99081110|ref|YP_613264.1| 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase [Ruegeria sp. TM1040]
MSDWQKTNWRSKPRVQMPDYTDQAALQAVEAQLAKYPPLVFAGESRRLKAQLGAAGRGEAFLLQGGDCAE
SFEQFSADGIRDTFKVMLQMAMVLTYGAKVPVVKVGRMAGQFAKPRSAPTETVDGVELPSYRGDIINELA
FTPEARIPDPRKMLQAYTQAAATLNLIRAFSTGGYADVHQVHAWTLGFTEGDKAEAYRDMANRITDTLDF
MKAAGVTADNAHTLQTVEFYTSHEGLLLEYEEALTRLDSTSGKWLAGSGHMIWIGDRTRQPDGAHVEFCS
GVLNPIGLKCGPTTTADDLKVLMQKLNPENEEGKLTLIARFGAGKVADHLPRLIQAVKDEGANVTWVCDP
MHGNTIKSASGYKTRPFDSVLREVRDFFGVHQAEGTIPGGVHFEMTGQDVTECTGGVREVTDEDLSDRYH
TACDPRLNADQSLELAFLVAEELSRLRTPDDTRAAI
>gi|99081111|ref|YP_613265.1| transcriptional regulator [Ruegeria sp. TM1040]
MQTKPEAIPELTSGGKHRRFTFVLLDQFTLLCFSAAMESLRIANRMAGRDLYSWTLVGEGGETVTCSAGT
VFQVDSDLTELQRDDTIMLCGGIEVQKATTKRVLSWLRREARKGLTIAGLCTASYTLAKAGLLDGKRATI
HWENSDSFAEEFEDVDLTKSVFVIDGNRLSTAGGTSSIDLMLKIIADDHGEELANMVADQLIYSSIRTDQ
DTQRLSIPTRIGVRHPKLSMVIQMMEKNIEEPISPSILAEDVGMSTRQLERLFRRYLNRSPKRYYMELRL
QKARNLLMQTDMSVINVALACGFASPSHFSKCYRAHYDTTPYRERGSKGVRHIT
>gi|99081112|ref|YP_613266.1| glucose sorbosone dehydrogenase [Ruegeria sp. TM1040]
MLRPLAVIASLMFSAAMAVPSLAQQMDSSQGTLRVEKMADGFDVPWGFTFLPGRALLVTERSGQLWYLNG
ARRQQVDGVPEIAADGQGGLLDVVAARDFVQSRTVYLTFARPQGRGAGTAVARAELSEDGSRFDSLEVIF
EATPGARGGRHFGSRLVEAPDGSLYVSLGERGDRPSAQDLSREQGSIIRILPDGSIPSDNPFVNSEDARP
AIWSYGHRNPQGMALDAAGDIWAVEHGARGGDEINRITRGANYGWPVISYGRHYSGLKIGEGTEKPGLQQ
PEWYWDPSIAPSGMMIYSGKLWPNWRGDIFVGSLKFDYISRLSGAPLQEVEQMKSPETARVRDIREAPDG
SIWFASEYEGALFRITPN
>gi|99081113|ref|YP_613267.1| extracellular ligand-binding receptor [Ruegeria sp. TM1040]
MKKLLTATAAIALSAGTAFADGHGHPDEVKLGVLFGFTGPIESLAPTMASGAELAMSEVTESGKLFGGAK
VTPMRADTGCIDNGLATANAEKLIADGANGIVGGDCSGVTGAILQNVAIPNGMVMISPSASSPGLTSMED
NGLFFRTTPSDARQGEIMASILADRGVDSIAITYTNNDYGKGLSDSIKSAFEAAGGEVTIVTAHEDGKGD
YSAEVAALASAGGDILVVAGYLDQGGLGIIQGALDTGAFDTFGLPDGMIGDSLPNNVGPDLNGSFGQIAG
SDSEGAEMFAAKASELGFDGTSAYSPESYDAAALFLLAMQASGSVDPKDYVAKITEVANAPGEKINPGEL
GKALEILANGGEIDYEGATGVNLIGPGESAGSFREIEVQDGKNVTVKFR
>gi|99081114|ref|YP_613268.1| ABC transporter related [Ruegeria sp. TM1040]
MIVVEDLHKHFGGFHAVDGASLEIAKGSITGLIGPNGAGKTTLFNVVAGVLPPTSGRVLMDGEDITALPP
HELFHKGLLRTFQIAHEFSSMTCRENLMMVPGNQSGETLWNTWFGRKRIADEERALRAKADEVLEFLTIS
HIADLKAGEISGGQKKLLELGRTMMVDAKIVFLDEVGAGVNRTLLYTIADAIKRLNEERGYTFVVIEHDM
EFIGRLCDPVIVMAEGKKLAEGTLDEIKANEQVIEAYLGTGLKNKDKLQGADA
>gi|99081115|ref|YP_613269.1| ABC transporter related [Ruegeria sp. TM1040]
MSEPFLIGDSMTGGYGKGPDILHDCTIAVNPGEIAVIVGPNGAGKSTAMKAVFGMLNVRSGAVRLGGEDI
TSLSPQERVIKGMGFVPQTSNIFTSMTVEENLEMGAFIRTDDYSDTMEQVYHLFPILKDKRHQAAGELSG
GQRQQVAVGRALMTKPKVLMLDEPTAGVSPIVMDELFDRIIEVSRTGLPILMVEQNAKQALEIADKGYVL
VQGANAYTGTGQELLADPEVRKSFLGG
>gi|99081116|ref|YP_613270.1| inner-membrane translocator [Ruegeria sp. TM1040]
MDFLNAFVALSNFVLIPGIAYGSQLALGALGVTLIYGILRFSNFAHGDTMAFGTMVVILFTWLFQSWGIS
AGPLPTALLALPIGIVMTMGLVLITDKAVFKFYREQKAKPVVFVMVSLGVMFMMNGLVRFIIGPGDQRFG
DGERFIIKARTFKQMTGLDEGLAIKTSQGITVVTAIVVVALLFWFLNKTRTGKSMRAYSDNEDLALLSGI
NPERVVMITWIIVAALATIAGTLYGLDKSFKPFTYFQLLLPIFAAAIVGGLGSPLGAIAGGFVIAMSEVM
ITYAWKKVGGYLLPESLEPEGLAQLLSTDYKFAVSFAILVVVLLFKPTGIFKGKAV
>gi|99081117|ref|YP_613271.1| inner-membrane translocator [Ruegeria sp. TM1040]
MSDTLKHTLLFAFVGLLLVLEGTTNAFGVFSGSWNSALTILNMGLISAIMAIGVNLQWGFAGLFNVGIMG
FTALGGLAVVLTSMPPTPGAWQAGGWQILLALVLGAATIAAAIYSYRVMAAGKARTLTLLAILIVGFVVY
RAALDPGVEAIESINPALEGNIGGFGLPVLLAWPLGGLLAAGVAWMIGKTALGLRSDYLAIATLGIAEII
IAVLKNEDWLSRGVKNVVGLPRPLPYEVDLQADPAFVNQAAAWGMDATTASTLYVKLGYALMFTVVLLVF
LWMAQMALKSPWGRMMRAIRDNEVAANAMGKHVTRRHLQVFILGSAICGVAGAMMTTLDSQLTPGTYNPL
RFTFLIWVMVIVGGSGNNFGAVLGGLLVWFLWIKVEPMGVMLIELVTSGMSEDSGLRAHLLESASHMRLF
TMGLVLLLVLRFSPRGLIPEK
>gi|99081118|ref|YP_613272.1| hypothetical protein TM1040_1277 [Ruegeria sp. TM1040]
MKNIDGLYTVEFVTPALRGFGVISFAGGRARGGDSIIAYDGNYSQAGSDVALELEAFRHAHKNDMVPVFG
KEHVSIAVNAKLLSNNRIVGTAASRDAPDIPMKLVFTKLRD
>gi|99081119|ref|YP_613273.1| phage late control D [Ruegeria sp. TM1040]
MDFRPYFRVTVDGKDISGVLAPRLVSLRVTDGAGVQSDTVEIRLSDTNLFQRISEPRAGAEIEVWLGFPL
SLSYMGLFVADTIETGGPPDTVTITGTASVNGETTSGKTALTDQKKRSWPEGTTIGAMVEKIASEHGLIA
MVSESLRAEALPHIDQIDESDINLLSRIARDFDAIAKPGNGRLIMTRRGESLTASGQPLPVVRVDKSSVT
EWRYRNSLRERVGRVIATTQDLEAGQPVEVEAGQGEPALRLRRRFPDKVTARKTAESELKRLGRAGRSLS
ITMPGNSDIVAEARLSASGFRSYIDGEWLVSRATHILDSGGYRTAITAEPVE
>gi|99081120|ref|YP_613274.1| phage tail X [Ruegeria sp. TM1040]
MDSAVFYHSKEGEALDEIVWRHYRAEIRGAFETVLEANPGIAAMGPILPLGTRVKLPVIDTPKEAESLRL
WD
>gi|99081121|ref|YP_613275.1| phage P2 GpU [Ruegeria sp. TM1040]
MAGTMMQLGAYQFSIDNAAYQNLERSTEYRWAAQERVGADDALQFTGYGEDTISLRGVIYPHFKGGLAQL
DKMRRQAAIGIPLPLIAGTGRILGVWVVKSVREGQRTFTHHGAPLWQEFGISIRRYDGGLRSLLPF
>gi|99081122|ref|YP_613276.1| hypothetical protein TM1040_1281 [Ruegeria sp. TM1040]
MAKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQGKSVEHLDREY
EALERTLEDLARKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGITAVGAGIFALTSSTASYGDQV
AKTAGKLGIGIEALQEYRYAAERSGVSTETFDSSLTAMQKRLGEAAQGTGAAKKALDQIGLSASDLIAMG
PERAMGAIADKLQGIEAPAERAAIAAALFSRSGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAE
AFADAQLDAQLSIKGLKNTIGSELMPVVTRSMQRFSEWAVTNRDDVAAFADTAATKLEAALPVIGQIAEG
MGDVSKAVGGVISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGRLGVSMAALVPWGAAGAGAMK
LFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGHFGGLGRFVSG
VWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKLGITSHITAAWDIARTMIGTA
IGEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAVGAVIEWLAQKFVWLMEKLQPVLDGLSWLRD
KGAGAVAGIQGIGDSISNGVSNLFGGGDSSGDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPE
TIWTSKGGYVAHANATERLARLSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQ
THAAQAAPVVIHAQIHAGSMSPQSLIDELERRGREAQAGALYDQAHNYGQYGGA
>gi|99081123|ref|YP_613277.1| hypothetical protein TM1040_1282 [Ruegeria sp. TM1040]
MQNPALPSYCKHNTDGDQESVTVTLAKGITVGSEKRKEVTLREPTAGDNMAARQMAKGDNAVHEITLIAN
LADLSPEEVQTAPMRDYRRLQEALDFFNG
>gi|99081124|ref|YP_613278.1| phage major tail tube protein [Ruegeria sp. TM1040]
MSIRNILKNFNLFVDGRGFAGELGDYTPPSPSIATEEYRGGGMNGPIDLDMGMEKMTTSFVLRNYSADVL
ALWGIAPGRRIQITARGALESEDGTVTPVIHNMRGKIITPDRGTWSPGQSATLTVSMTLEAFKETVGPRV
VCDIDVINMKRIIDGVDHLAEQRAALGI
>gi|99081125|ref|YP_613279.1| phage tail sheath protein [Ruegeria sp. TM1040]
MAGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKLDTTDDGTGGG
TLPAALDGIFDQIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVHALSGAESVVGFAPRILIAPG
WTHQRPEDAGNPGSYLANPVVAELEGIANRIGAVIIADGPNTTDADAHTYAGDWGTSGRIYVVDPWVKVL
DSAGEVVNEPASARVAGVIARTDNDEGFWVSPSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATII
RQDGFRLWGNRAPTADPKWQYLCVRRTADVLNESIQRTHLWAVDRGISKTYIEDVVEGVNAFIAGLVAQG
AILGGTCWADPDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYITEALG
>gi|99081126|ref|YP_613280.1| hypothetical protein TM1040_1285 [Ruegeria sp. TM1040]
MALDTSWCIKGGSRGYVTTRTVTWHLMWKTSPFVLTIPPGREFESSVPRVLQWIWSPDDPYYLKAALIHD
TLLENGSRAFEADAQWRAAALSDHAPPLRTTIAFVAMWARRLGQSALGL
>gi|99081127|ref|YP_613281.1| hypothetical protein TM1040_1286 [Ruegeria sp. TM1040]
MKARIQNDVAVDVHPAPETAFHPSIAAQFEAVPDEVGLGWRRDAQGTWVAPPEPGPSNEPNSGQMRTSVT
RTEYYGLFTPDEEAMIRIAASEQVTSDKLNAADAPEKARLMGVAKLAVMLQRIDALAPTDNVDLGNPQIQ
AGLDLLVAAGLLTPERKAEISSGVEA
>gi|99081128|ref|YP_613282.1| putative secreted serine protease [Ruegeria sp. TM1040]
MARFASGSEQASAAAVGIGTNTISGQKILPAGYMGEFGSGMWSCFQQPGTHIFIVPAGVTSLRVRVVGPG
GGGRGNDGYGGAGGGYAHGVFDVTPGDSFDVTVGQGGDGGDFPTSGGTSSFGALISATGGTASDDSNTPT
VGGQGFGGDFQASGGVSGQAQRTGGGGAGSQLGNGGNSAAFVQSGGAGVNNGHSFAYGGGGPFGLADLHH
HGWHESDNFGAPDILGHQAGIERASSSENPYTSFNPINAVLRFPFDGFVGGGGEGTEYQGAPGGIGGGGG
GGWNTTSHHGGRGGIGGGAGGGFSGGRNHGGIGGGGGGARGDGGKGGHGLVIVEW
>gi|99081129|ref|YP_613283.1| hypothetical protein TM1040_1288 [Ruegeria sp. TM1040]
MSAGVNTALYTVPAATGAAININVANHGPDAATVKIAITDGSAPADGDWIETGHSVSLANPLLRTNEPMA
AGEVIYVQASTDTVDVRVSGYEEDV
>gi|99081130|ref|YP_613284.1| putative variable tail fibre protein [Ruegeria sp. TM1040]
MTQIVAIHTTAGLALLAQAQGEGALITLGDMAVGDGGGAAIVPDPAMTGLAGEVFRAAINRVYQPDPIGQ
PTKYAAELVIPAATGAFVMREVGLFTDDGTLFVVGNLPETYKPVPADGAFSDTLVRIEFLVANAGTINLT
IDPAVVTATTAWVINYVDGQVSAKFATDPQAIAGVSTDTIMSPHAVKLVLDQAVNDLVAGAPEALNTLSE
IAAAIANDENYADTVANLLKPTRARRAYLGGR
>gi|99081131|ref|YP_613285.1| Phage tail protein I [Ruegeria sp. TM1040]
MGAPMPESLLPHNATTQERALEAVSGPPLFTTAPLREIWDPDRCPVELLPWLAFSLSVDEWDPSWSEPAK
REVIRRSFVVHQRKGTRGAVAEALEAIGFVPEIVEWFQADPRRAPHTFALKLDAVRDFNSPESIQRALRA
VDESKPIRAHLTSVQISTATVSEPVAAAAVVVGQEITVSAA
>gi|99081132|ref|YP_613286.1| baseplate J-like protein [Ruegeria sp. TM1040]
MAGGFASINLSQLPAPDVLQAIDYEVALAEMLSELRQRDPAFDALVESDPAYKILEIAAFYRTLTIQQGN
DAARAVMPAYATGSDLDHIAARYAVERLVIDPGDPEALPPVPPVLETDDALRRRMFLAFEGLSTAGPMGA
YVFHALGADPDVGDASVQSPAPGEVLVTVLSRSGDGAAPATLLTAVDAALNKDDVRPLTDLVTVQGAAII
GYTIEAVLTVLPGPDSAVVRDAAQRAALEYASQQHRIGADITLSGLYAALHQPGVQNVALISPAADILVD
ASEAAFCSAVSVSIGGTNA
>gi|99081133|ref|YP_613287.1| GPW/gp25 [Ruegeria sp. TM1040]
MIGIDASTGKHMSDLAHLRQSVRDILTTPIGTRVMRRDYGSRLYRLVDAPMNDATRLDMMAATYEAIETW
EPRLQLESVSLEGSEPGAIVIALAGQYLPTGEPVFLEGIGLN
>gi|99081134|ref|YP_613288.1| PAAR [Ruegeria sp. TM1040]
MPAVTRKGDTCTGHGNYPSRSSTGGSGSVYTNGKPVHRQGDGWSVHCNPVPICHGGILATGSSTVFVEGK
QIGRIGDPVDCGSSVASGSGNVFAGG
>gi|99081135|ref|YP_613289.1| phage baseplate assembly protein V [Ruegeria sp. TM1040]
MSYGAARNEQVREGIVRFGVITAVDPGAARAKVSFGGESESAWLSWFPLRAGAISVWAPPSEGEQVMVLS
ESGDTAQGVIIGSAFSSSNPPTAGAGGLFKIQVGDSSIEIDENGIRISAPRIDLN
>gi|99081136|ref|YP_613290.1| hypothetical protein TM1040_1295 [Ruegeria sp. TM1040]
MSRNVDLIAMHDAILAQIRADFPDLATVGDYDLDKKALPVPAVLVELIDLEGDPDADPGTEQVPFVSKWV
ARVILGFRTEGVKREVRQLTAALAAKVHRQRWGQRVGPAQVTYIGPDAFDPEFDKFEVWSVEWDQQIDLG
ESVWTGEGVVPEVVNVGWAPDIGPGNEDEYSETVEAPL
>gi|99081137|ref|YP_613291.1| prophage LambdaW5, minor tail protein Z, putative [Ruegeria sp. TM1040]
MFAAFDFDQGELRRIAEEFDASEKDLRNAYSRALRRTAQTMKTRSRKGLRTKLQLRTAAELRRRLQGFRF
KRNGAMGSVRMWFGLNDMRVSAFKGRASRTATGASYAGHDFPGGFIGRNAKGRPTIKQRAGSRAYPIKEA
RMPIDDEAQTFIEDEVFDEIEEVFFHYFRAEVRARTIYGVGS
>gi|99081138|ref|YP_613292.1| hypothetical protein TM1040_1297 [Ruegeria sp. TM1040]
MPAPSWDNPDAFLSTDDFALEVTVTPRGGVSRTIRGIFDEPYMNAQIGEYEADSSDPRLTCKASDVADLR
DKDPVVIEGRTYYLLTNPQPDGTGFAVLHMATE
>gi|99081139|ref|YP_613293.1| hypothetical protein TM1040_1298 [Ruegeria sp. TM1040]
MADTKKPQKKIFAVTSAFVWDKAIKKPGDTVALTAAEAHGLKERGKIEEPPEKPASKKAAETGAKKAAAT
DPAKTDPAATAKAPT
>gi|99081140|ref|YP_613294.1| peptidase U35, phage prohead HK97 [Ruegeria sp. TM1040]
MTREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEAVVLDRLLDGG
AVLVGHNWDDQVGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIRQHVSVGYRVITISEEIREGQ
PNLITVTRWEPFEISVVPVPADPTVGIGRALENPPEAGGADRGQTGEENAGAVAEPNDTGQRETQMKTII
TRDAEGNLVRAKVDENDQIIEVIEVLERAGAAETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAG
RHGVTDMRERLLDHLHQRSNESRQISERSSIGLTDSETEQFSFLRAIRALANPTDRSAQEAAAFEFEVSD
AAAEAQGRDAQGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQSFIQMLRNRTILLQLATPLMG
LVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDIEALVRSDLAL
ALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAEVIQMESEISAANADVNSMAY
VQNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTNQIKDGDVFHGDFANVLVGMWGGLDITVDPY
THSRRGRLRIVTMQDADYVLRHPAGLCFGTDAS
>gi|99081141|ref|YP_613295.1| phage portal protein, lambda [Ruegeria sp. TM1040]
MIWRLFRREDPVAPEPDRKPPPMLTAPRRRGQRMFAAAETDRMTSGWTNSPMPADQIIRRNWRVLVARSR
EQSANNDYAKAFKASARRNLIGQKGFTLQAQAFDGDKLDAQANKAIERAWRAWCKAMNCDVKGRRTLRQI
QKTIVNGLCTDGEFMVRMVVGRDAGPWGFALQILDPVLCPVDFDEDRRPGGGFIRAGIEYTKMGRPVAYY
FTTLDQSQADYHYSGRAFIRVPADEIIHWFEEDFVGQKRGLPWMATALLRMRQLGEFEKSALNNAREGAN
KVGVIEWDEGFGPEPEEDDATKSDDDLGFEDIELDSEMGVYHQLPMGARLKRVETGYPNGEMAVFSKHML
RGVATGLGVAYNDLANDLEGVNLSSIRHGVLSERDQWIELQESLIEAFALPIYERWLEYSLLKQKITLDN
GSPLPASKRSKFMAVTFQARRWQWIDPAKDVTADADAVDNLFKSRGQVIRERGRDPREVYAEVAEDIAAM
REAKIPDNVIEALITAKSKGGQGSGQPAKTGTGETDPDADPDPDKSE
>gi|99081142|ref|YP_613296.1| hypothetical protein TM1040_1301 [Ruegeria sp. TM1040]
MTFRAVVEQPIFPAPEWGLSLFLRGKSSIDLISAASGVDHIFEASALVTASWQPGRYAYVIRASDGADVH
PVERGEVLIAPDLAAQGENFDGRDHVRKVLDAIEAVIENRATIDQQSYTINNRSLQRTPLSELMKLRHQY
RAELAAKKARRRGGFGRAIKVRLT
>gi|99081143|ref|YP_613297.1| phage terminase GpA [Ruegeria sp. TM1040]
MNARADFSNARAVVRIARRARAFLRPPPNLKPSEWAEENIKIPVGNAVPGKMRFDNAPYQREVIDMTADP
RCNRISLMWGAQVGKTQTALAAQAYRIGFNPVSQMMMQPSQGDLTTWLETKFNPLVEENEDLAELIAKPR
GRQGVNNQRMKSYPGGFLMFSWSGSPKTMRGRSAPFIVCDETDGYDRTNEGHPVGLLWQRAATFGDQRLL
LEISTPTIKGGSWIEKSFEAGDQRYFYVRCPHCGHLQRLNWSQVTWSKDADGLHLAETAGYLCVGEGCGT
VWSDGERVAAIRNAERDGGGWIASKPFRGHASYHLSELYSCFRRLEDIVQSFLDKKAAGDLQTFVNVSLA
ETWEEEGDKLEASVLMARAAKFAAPVPLGAGVLTAGIDMQNDRLEVEIVGWGLGEESWSVDYRVLWGDPL
QQDVWDELDALLSETWEHESGAELRVSAACLDTGGEGGRTQAAYDYARKRLGRKVWAIKGVGGWGRPIVT
QPSKVKQKGVRPVYLHSIGVDEAKAVVAQRARISDAGPGHCHFPADRDPAWFDMFTAEALRTRYVKGFAV
REWHNVRPRNEAFDCRVYAYAALRILRPNIKRLVASLDVQGQETEDEAVEISPDAERALVKPPEEPEAPN
SQAPKKTGWGAKKRRRRRRY
>gi|99081144|ref|YP_613298.1| phage DNA packaging Nu1 [Ruegeria sp. TM1040]
MAEKNKKSKGQEVNRAELANINGVSLPTVDEWVRRGCPVVQRGGRGRAWKFNTAEVRSWRDDDIRAQASH
TGMATKDELTLRKLAAETEQAELDLARAKEELVPVEQFDRALAKAFGEVRAGIRNVLPSRAARRLIGESD
ETQIKAVLLDEVDQVLEALADTDLITEADLDEDDEEAEEGADSA
>gi|99081145|ref|YP_613299.1| hypothetical protein TM1040_1304 [Ruegeria sp. TM1040]
MPLLPLLLICAALASCAKVAGLVGGALGGGPSVAANVQAGRNNAQTVGQATFSDQRIEDVQARSVELSAG
DTRVRSENVETVIVREDPPAWLLLVALVGWLLPTPQQMGGALFGIIARPFRGSFPGG
>gi|99081146|ref|YP_613300.1| glycoside hydrolase family protein [Ruegeria sp. TM1040]
MAKWEGVRLEAYRDIVGVPTICFGDTHGVQIGDTATMAECVDRLEKDVRAFYSEIRPCMTNPNIPAGVQA
SMLELAYNVGSGPVCRSTMMRLANAGKHRAACDELRRWVIAGGKRVRGLANRRADSKRTLCLKGLT
>gi|99081147|ref|YP_613301.1| hypothetical protein TM1040_1306 [Ruegeria sp. TM1040]
MSLIERIEQASTGLFVTAITGAASGGVWLVRRIFTNQKQIEMLQQSLEARDKQRDEDREAFSEVRKDVRE
IREILHRR
>gi|99081148|ref|YP_613302.1| hypothetical protein TM1040_1307 [Ruegeria sp. TM1040]
MSKEIINISNLASVDETELVLVQSMVAELFGEPHQLVNLQGAYFGPRRYPHTVYLSEADRFCVAILIPSH
QADKLAFRVAHLSHELVHCLNPNGWPSKATILEEGLAEHAKVYISRVMYEGFPQLGANIQTYGAYQEAFD
RIEDLIKYEGLKGFYSGIRKLREDTCRPFAEIKAEDLKKVFLNTPVELLELLSQPFRELD
>gi|99081149|ref|YP_613303.1| hypothetical protein TM1040_1308 [Ruegeria sp. TM1040]
MKRDDDYIRRMLLALELADDPYLAASQETNSMSASEVKKNYHIALLCDAGFMKRHSETRFRMTNQGHDYV
LSIEDDGVWDQTKKSAAQVGGVALGLMKDIALGYVKQKLVGLGIPVE
>gi|99081150|ref|YP_613304.1| hypothetical protein TM1040_1309 [Ruegeria sp. TM1040]
MSRIKNFGSFLGGVGTAVAASIGAYSLFYPGKLAIESPPDLIESVGSLSSALDGLSLALTEDESEALKQR
LQSLETQIARTITTGDNDQLPFVPRSFQGLRTFEQNVAYDFIAPNGVSRLLVFEDTNSGSAMFVQVDGAP
AEVNAWPTIGQHIDIEFGNESCRFEFIDLERGSSITSRVNCS
>gi|99081151|ref|YP_613305.1| hypothetical protein TM1040_1310 [Ruegeria sp. TM1040]
MGVVEDLKHEVANLRKLLDQAQRSGQRKASASVPALYQPDLPAVVRYPLAEFAAGRGRNVPLPESVQEIA
EVIGRRNAVRLVEGTRATGARKWRRQLYVPGSIPEDHRIATMIGIEAAQKLSHSHANCILELPSCHGLRK
AYMADHALRQWDAGASIAEIAQEMGVEIKTAQGLLDQGEYWRKRLG
>gi|99081152|ref|YP_613306.1| hypothetical protein TM1040_1311 [Ruegeria sp. TM1040]
MTAEEYRDAHQATTVEDRRRVRGTKRTTTADGITHDSKTEAERWEELKLLQAAGEICGLRRQVEIGLIGR
DGPIMTDGGAKQRVYRADFVYVDNRLGVTVIEDRKGHETEAFKLKKAILAAQGMEILVTRAKG
>gi|99081153|ref|YP_613307.1| hypothetical protein TM1040_1312 [Ruegeria sp. TM1040]
MTERPLKNITRESLAPLWARKDIPTERIAQALGVTRQAVSYKARTLGLPSRAKVRKQLCDNETFRRMWLA
GVNSTEMAEHFGYSHRSAIGTRAGVMGLPRRSGCTDTGKTGGWVQTISLAQFFEQDLRERMEAEAKERRG
TQ
>gi|99081154|ref|YP_613308.1| hypothetical protein TM1040_1313 [Ruegeria sp. TM1040]
MAATQASKVSSLPMRETEADRAVREGAESAAYRATASELRQFVERFERLEEEKKAIAEQQKEVMAEAKGR
GYDVKVLRKLIALRKRDADDIAEEEAVLALYKECLGMG
>gi|99081155|ref|YP_613309.1| hypothetical protein TM1040_1314 [Ruegeria sp. TM1040]
MSNHADPDTHGHRFGAVVVTVDLALGDCVIRAPQPSKGPLQTIDRQTRFNSLDEIREAYRTQNWLSRKPQ
QHPHAGDMASALKFAGQRLKAEQERKRRG
>gi|99081156|ref|YP_613310.1| hypothetical protein TM1040_1315 [Ruegeria sp. TM1040]
MTAKKEASVSIRRRTAFSTIPNALIRDVEISPEARLLLCYIMSCSDSWTFYVSECQRILGCKKDKWQRIR
REVIEAGYLRVHAKNGENGRLEGYIWEVFDEPQAPDAVSSGGSEPQDAGENGNHREPEKPATGAQPVEPS
HREPEKPARRLNPPAGKTGPIRKNNKQKEKQTSCADQSAPTTDVCSDNLLKDFERVFPKLATAKATLRAI
SRALESGATAEQIIGAAEAYAAEQQGNAPRYIRRADRFFEDGFWQTYVPAQPATPSASETDFVEHWAKTI
RSVEMGHFMFGKISPDTAAKCIRAGKVTAADCRRAGLRITDAEAQAMLEVAQ
>gi|99081157|ref|YP_613311.1| hypothetical protein TM1040_1316 [Ruegeria sp. TM1040]
MGKRSSFKRRKNDLYRTPWGPVPILAPHLPAQFRFSEPCAGNGKLIDHLRRIGGTCAEAVDINPGRGDVV
QGDALNWQPLQRPQRPLDFIITNPPWSRVILHPLIAHCIQVCPTWLLFDADWSYTLQARPYLRHCRKIVS
VGRVKWIEGSKHTGKDNCAWHLFTAEDHGRTEFIGRV
>gi|99081158|ref|YP_613312.1| hypothetical protein TM1040_1317 [Ruegeria sp. TM1040]
MKCRHREFHSAASYLVSGMKALGGAANPPRNEHAPEYFPAGHHGTAEHQDHAGIRTRRGLREQWSLKSLI
TGARAGARGGQSRHRQLFLGGATHG
>gi|99081159|ref|YP_613313.1| hypothetical protein TM1040_1318 [Ruegeria sp. TM1040]
MKILDKAPIWKRLKELPGRIEALEARVAELEGQPAQASHLHTCAQCGKPASVTKISDHPEFGFAGVKIRT
ITCEDGHALNYDWDPSKD
>gi|99081160|ref|YP_613314.1| hypothetical protein TM1040_1319 [Ruegeria sp. TM1040]
MSRQRLTLIVNNDLPCGHDARGAGQKSWSNQFDPHALKVSAPDLWSSYFRTRFHSPREVALFCDVSFQTA
LNWWGAVTAPASHIALLVMLTDPGAPEFFGQALEVAA
>gi|99081161|ref|YP_613315.1| putative phage repressor [Ruegeria sp. TM1040]
MQQTFRDAFLAAIKTTGKSMRQVALDAGVSYEQLKNLSQGKSKSTNVDDAIRIAASFGTNLENFLEGNTA
PSVRPTISIAGTVGAGAQVPVFDAYPKGGGPQVECPPGLSPHGIVAVEVEGDSMEPVYSDRDLLFYSRNG
HDSVPSDIIGHRCVCEDEDGMGWVKQVKAGDEPGLFHLISLNPGANNIWNVRLKWAARVQLHWPADLAKK
A
>gi|99081162|ref|YP_613316.1| hypothetical protein TM1040_1321 [Ruegeria sp. TM1040]
MRRIVSFVLRVLRRTAFLLVFVVLILGSNILLLTADAVYDATKRGLWSLASVVADVGTPTTHRGNREAVV
RLTAQTEVFEAEAQRLDAELRRARNEVVELSADNETLNRRAARLADEKAELDQNLRRARRELTNLSSETA
ELTAERVRLSRRLANLEIQVEELDGPLRERVSAINERLARRTSRMISTNTSSMAIEAVPYVGVAAIVGVT
FMEVRDACLTLADTREMSELLSGEPEAEVPACGYSPAEFWDILAGGPDVTSCRDLSADVPAELRFDCSTI
LRPGESASPSFDGAPEFENVRRPGE
>gi|99081163|ref|YP_613317.1| ankyrin [Ruegeria sp. TM1040]
MSNCAVVINSWESAAVQKTYLGLFLSCAFSASASACEVDAEFVRESNSETLIACLEGSESDEFLNGRNSE
LATVLHLAVETEKNHLVLDAIRRAAGEEGWQNLRDRLDNAGRTALHIATETGETAETVRWLLAWGADPNA
RYAVENRWNPLSSDYGITPLHLAVMRPNSADVVSALMAGGADPSIARPIESNADKYYWPAFLVASRHAED
LRVLTAFAAGGGDLSVVSNDDNNALHVAAGWDRPSGVIRFLLEKGVDANATNNEGQTPLHLAARYSSKPE
TVASLLEAMDDPCAADTKERTARELLKVNEAIAGDHALDLRFHEICVEGN
>gi|99081164|ref|YP_613318.1| hypothetical protein TM1040_1323 [Ruegeria sp. TM1040]
MTRPTQLEPNVITEQGLRELAEKGHGVEVLCQTVPERKGPSWYGRWIMRTIGADGKEKLLVTARTRLTQN
SIKVREFKTATGVISFLIGIGFDHADIPLREGETTLHKLLNG
>gi|99081165|ref|YP_613319.1| hypothetical protein TM1040_1324 [Ruegeria sp. TM1040]
MKIPRWRWKSIYTTNYDTLVEQSFDSAKKRCRVYSSNFDFHIDEEEYDCELFKIHGTIEKDISTGHHSRI
ILTVDDYDHTEEFREQLYDRMRGDLAGADLVIIGQSLSDPDMDTLVRRAVKINEKALSPGQITLLIYSEN
QSRALLQERKGLRVVFGGIDEFFTRLDKRPPKIAPVMISKDDEALIGTHISNSIVEVSEVSNGAEADVSS
MFNGWPATHREVEAGLTFERDISREVAKHFEDPCTLSGVILGAAGVGKSTAARQTLQLLRRAGFRAWEHV
NEHTLSVANWRKIAGNLKESELLGVLLVDEAHSHLHQLNELMDLLVADDNPHLKILAVSTKSNWIPRSKT
PNFNRCGKDFWLSKLSVDEIDRLLNLIERQPRIRELVEESFSGFNKGERRRRLVHRCEADMFVCLKNIFA
SESFDDIILREFAGLDAIPQDIYKHVAAMETLGVRVHRQLAVRMLNVEASNISNILTSLDDIVEEYPVDR
RKGIYGWKCRHGVISEIVTRYKFGDLEQIISLLDHVIDNISPSYDIEVRTLRELCNLDGGISRIPEKKEQ
NRLLRRMISMAPGERVPRHRLIRNLIDQGEFEKAETEIRVFNFDFGSDGPVHRYKIKLMVARAARAPGLL
DEDRIVILEQAQELASTGIARFPNNKSILSAYAELGLEYLRRTGSYSFFDASMDELKAAEGRLGDPDITA
MISRFERRAAGSEAEL
>gi|99081166|ref|YP_613320.1| hypothetical protein TM1040_1325 [Ruegeria sp. TM1040]
MQDLTQAARQIAGSPEEHLDEIHLFTSAWATMKAARGQGFNPARLRPQHLIDRPAPTPEPTDMALDRVGQ
KVRAIMDERGIQPHRRHAA
>gi|99081167|ref|YP_613321.1| hypothetical protein TM1040_1326 [Ruegeria sp. TM1040]
MNTTRQGFEDWLCRAFQRFRTRLAVRIGRGRFNPPNCTPPAHLPRESMTPYSAAQILKATPLLNRARKFR
ELGGNIWRPDHDPWVYEEMLWMVDLHGIRVDAPTRGQAISLWIEAAISRTTKRATDGRPDCPFNGQESAP
SKIPVEA
>gi|99081168|ref|YP_613322.1| hypothetical protein TM1040_1327 [Ruegeria sp. TM1040]
MAKILIGCETSGIARRAFEALGHDVWSCDIEAAEDGSNRHIRCDIRDGILDEGWDLLTVMHPPCTRLCRS
GRRWMSGPGKWTRPRQLPKGKTWQDMRDDFEEGVSIFTACWRAPIDRVAIENPVMNDLAKDRMPADLPAP
HLVQPFWFGEPTYKATGWYLRGLSPLVETNRLKEPERGSDEWKKWNRIHRMSPSAERTRLRSRSFPGMME
AAALQWGDQASKQYAAAA
>gi|99081169|ref|YP_613323.1| phage integrase [Ruegeria sp. TM1040]
MVKKLERKYVTTKTVKGRVYYYFRRGETYQRLPNDPDSQEFDDAYWAIRSGRAKKKAKTTFEALIVSYYQ
TPEFRDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRDVIAARDAYADTWRKANAMVEMISILSRHAIDL
EWITANPASGVKKLTGGEYEPWPDAKLQAFEAFCKKHDLEWELTAYMLGVGTGQRIGDVVGMEWAHYDGQ
FIAVVQEKTAARLWVACPTFLKRYLDGLPRRGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAVGYVIHGW
RYTAAVHLAEAGASDSEIQAVTGHKTLEMVKKYRSQANQKRLSKSAQARRTRT
>gi|99081170|ref|YP_613324.1| thioesterase superfamily protein [Ruegeria sp. TM1040]
MEPRFLTPLTAEEQRAYGLSNPAPMAMADRVRFSEIDILQHVNNKAYLDWFEALRVNYYNSHFRHHFNGE
EPRHVVRNADIHYLREMVLGETYITTARVLSFRRTSYVLEQQIWSGDLRASMVGVMVFRTADGSAGYPIP
ESLTQQFVDVDGATQAG
>gi|99081171|ref|YP_613325.1| 6-phosphogluconolactonase [Ruegeria sp. TM1040]
MYFNEYPDREMLSISVANRIAGDLKTQLLNDGHAAIAVAGGTTPGPIFDDLCAAELDWANVCVMASDERW
VPEDSDRSNAKLIRNRLLTNRASEARFLPFYKTGLEPNDAIAPLCEEVRGQGGLGVALLGMGTDMHTASL
FPGVSGLEAALAADAPELAVMRPDSQPEPRITLTARVLDAAMAKHLVIFGADKREALERAQSLPPEEAPI
QAVLSECEVHWAA
>gi|99081172|ref|YP_613326.1| Usg-like [Ruegeria sp. TM1040]
MAPSETELMLKGYGLTTAELTYRMPDYAHVLNTFVWQDYDLAPDHPRLFSFIEFWQEEIEGALHHVRFAH
RKMVSAGEWRNVVGEFYIN
>gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040]
MSDTPETPENPDENLPQRPSYDGPTVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHET
GNSHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEV
RMDKPAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATL
ALIEDPDLTSEQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPY
QVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFTPMQTSFGCNMLA
LNGGRPEQLTLRKFLTSFIDFREDVVARRTAYNLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEA
RHKLMTRRWPAADIAGYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAGK
IKEYLEILSSRERIMSIIADELAEVRESFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPL
ADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKAIVNILP
IPTGVSIAAIMPVDRDEKEWDDLQIMFATSAGTVRRNRLSDFTNVMRNGKIAMKFEDENQGTKLINARIC
SEDDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGEDDEVVSMSVIRHSKYTPEQRSAYLKMRRA
MAGLTDEDASDEDAVEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMR
GGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEVVSVAWIADNGDDEETV
EE
>gi|99081174|ref|YP_613328.1| hypothetical protein TM1040_1333 [Ruegeria sp. TM1040]
MNLYHCQIDLQHEAKALAFASAVEQWMEYLKSRGAITGWRLLRRKLNLANDTCKDFLLEIEFENMTQLDQ
AFRILGEHDEEVARLYANVNVLIARSDFGLYRPFPDPERAERMALI
>gi|99081175|ref|YP_613329.1| carboxypeptidase [Ruegeria sp. TM1040]
MSSFEELIAFERQTQALGQIAGRLGWDQETMMPRGAAPQRGEEMAAIEAVLHARRSDPRVAEWLDTAQAP
DETGAAQLREIRRAYERAVKVPGDLASQIARVTSEAQGKWAQARADEDVAAFLPVLSEVVALKRQEGQAL
AAGGNLYDAMVADYEQGTTSSEIAEIFDAMRPGLVDLRARVLEKPTPAGLSGTFDENTQMKLARKVAKTF
GYDMSHGRVDKAVHPFSSGSGLDVRITTRTNPLDPFNCIYSTIHEVGHGAYEQNIDRVHLLTSLGRGVSM
GVHESQSRIYENQIGRSRAFTGWLFKEMTEAFGDVGVSSPEEFYKAVNRVENGYIRTEADELQYNLHIML
RFDLERALMLGDLEVQDLESAWNDRFLADFGYAVDKPSNGCLQDVHWSVGLFGYFPTYSLGNVYAGCLHE
ALRRDIADLDAQLSEGNTSGATEWLRENLQQFGGLREPQETIAHAAGSAPTHAPLMHYLEAKFSEIYDL
>gi|99081176|ref|YP_613330.1| cytochrome oxidase assembly [Ruegeria sp. TM1040]
MSNRTIFEEVSSDSKQQSSPTPGGIDRKRRGARGAIRVWLAVLFALVVAMIAVGGLTRLTDSGLSITEWR
PVTGAVPPMSEAEWQAEFEKYKQIDQYHLMNTWMELSDFKTIYWWEWGHRQLGRVIGLIWALGFFGFLVT
RSIPTGWTGRLLLPGILGGVQGAIGWWMVASGVTLGEGMTSVASYRLATHLGLAFVILGFLAWYMFLLGR
EERDLMQARRLKEEKLFGMSTGLLHFAFLQILLGALVAGIDAGRSYTDWPLMGGQIFPPRPFMIEPLWKN
FFENPGLVQFIHRVAGYLLFAFAVVVWLRGRRSAHKATQFAFNAVFAALSLQLVIGIVTVMTAAPVEIAI
VHQAVAVLVWVLILRARFLSAYPVATSIKGH
>gi|99081177|ref|YP_613331.1| RNA methyltransferase TrmH, group 1 [Ruegeria sp. TM1040]
MPSDRPQPDFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEAQLAQDL
PEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELMVQGEKVAVLFGPERAGLENDDIAKANAIITVP
VNPEFASLNLAQCVLLTAYEWRRQQEQVAHETFEIGKSEWATNQEVEALVNHYEERLTEAGYFFPPEKAP
GMKTVFRNLWSRMQLTRADVQMLHGVMRQMVRWKQREED
>gi|99081178|ref|YP_613332.1| thiamine monophosphate synthase [Ruegeria sp. TM1040]
MDSAEQTPEQPQIYLVTPPSFELGQFPGQLARVLDEIEVACVRLDLVSRDEDTLSRAADALREVTHARDI
ALVISDHQILAERLGLDGVHLTDSSKSIRSARKALGTEAIVGCFCGASRHEGLTAGEAGADYVCFGPVGA
SGLGDGAMAEADLFQWWSEMIEVPVVAEGGLTDDVVRKIAPFTDFFAVGEEIWREEDPVAALKSLQAAMG
>gi|99081179|ref|YP_613333.1| PfkB [Ruegeria sp. TM1040]
MTESADFSKPDILCVGSVLWDIIGRSTMEMQRGSDMPGRITRLPGGVAMNIAMTLARFGMKPAVLSAIGR
DPEGDELVSACGHLGLMTDYLYRSEDLPTDRYMAVEGANGLIAAIADAHSLEAAGDKILRPLVEGPLGTA
DAPFEGPVALDGNLKLALLDEIATHPAFARSDLRVAPASPGKAERLRPFLTHARGTLYVNLEEAGLLCQD
QFTDSETAAQALLARGAARVLVTDGGQSATEADASGHRTQVPPRVTVARVTGAGDTFMAAHIAAEARGED
RDSALASALHAAATYVSGEPPL
>gi|99081180|ref|YP_613334.1| indigoidine synthase A like protein [Ruegeria sp. TM1040]
MIDITYSAEVEAARAAGKPIVALESTIITHGMPYPQNVEVAAQVEADIRAAGAVPATMAVINGTLHVGLE
ADTLQSLGQAKDVAKISRADFAACMATGGTGATTVAATMIAARLAGISVFATGGIGGVHKGAETSFDISA
DLLELAQTPVTVVAAGAKAILDVPKTLEVLETQGVPVIAYGQDSFPAFWSATSDLKAPLRMDRATEIARA
HFLRGAMELPGGQLVANPIPVQDQIAATDLAPIIAQAQSEADAQGVTGKDVTPFLLQRIFELTEGRSLEA
NIALVRNNARLAAEIAKELAKL
>gi|99081181|ref|YP_613335.1| hypothetical protein TM1040_1340 [Ruegeria sp. TM1040]
MNTPFDETPPPPRRPGLFARLRSSFLTGIVVIAPVGLTIWLLWTVMGWVDGVVLPLVPNTFQPEQYIGIN
LRGVGLIIFLLFTIVVGWIAKGIIGRSLIGYAESLVNRMPVVRSIYSGIKQISETVFAQTERSFEKACLI
QYPRRGIWAIGFISTTAKGEIVKHTETSGRLVGVFVPTTPNPTSGFLLYFPEEDVVELDMTVEDAAKLVI
SAGLVYPNGKDAAEALEEKAAKELS
>gi|99081182|ref|YP_613336.1| patatin [Ruegeria sp. TM1040]
MVKKINLALQGGGAHGAFTWGVLDRILEDPDIEVAAITGTSAGALNGAAFKAGMAKEGRAGAKASLDRLW
ARMGAVGDMRMANWIAGFDAAPILGALKVAAPFSPIEAMSQAISPYTYGPFYRNPLQPVVEQFDFDKVCA
DAGPDLFICATSVQTGKVRVFSGTDVSTDAILASACLPNLFQAIEIDNPETGHVESYWDGGYTGNPALFP
LFRDDLPDDLIVVNINPLVREEVPKTAHDIQNRINEISFNSSLLRELRAISFVQRLISQGNIEEGQMKRV
LVHMIADDALMTRLSVTTKLIPIPQVLHMLKEAGRNAADAFLAAHRDDLNQRQTVDLVEMFG
>gi|99081183|ref|YP_613337.1| 3-hydroxybutyrate dehydrogenase [Ruegeria sp. TM1040]
MSVKGKTAVITGSNSGIGLGVARELAKAGANVVLNSFTDRDEDHAIAAEIGKEFGVEARYIQADMSKAEQ
CRALIETAGQCDILVNNAGIQHVAPIDSFPTEKWDAIIAINLTSAFHTTAAALPMMRAAGWGRVVNIASA
HGLTASPYKSAYVAAKHGIVGMTKTVALETAEEPITCNAVCPGYVLTPLVEAQIPDTMEKYNMGREEVIK
KVMLERQPSREFATVEQLGGTVNFLCSDAAKQITGTTISVDGGWTAL
>gi|99081184|ref|YP_613338.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGAVVFGNLGGFD
SLNPFTQKGNPPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSWVEFTLREEARFSDGTPVTIE
DVIWSYETLGTEGNLRYRGFWAKVDSIEQTGPRSLRLTFNVEDRELALIAGLRPILKKSQWDGRDFADAP
PNEAPIGTAPYVVSDFELGRSVTFTRNADYWGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAV
REFNAAKWDSDYGFARVQNGDVIKTEIPNQKPSGMTGLVMNTRRAPLDDWRVRQALIEAFNYEFINDTLT
GGRLPRITSYFSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPVSDGSERNRANLRRARALLQD
AGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDSAQYVERQDAY
EFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQHMLTTKSSEEFIAAARALDRV
LTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYMPEVWWNASE
>gi|99081185|ref|YP_613339.1| hypothetical protein TM1040_1344 [Ruegeria sp. TM1040]
MTLLLFLARFAAQSSKSVSDASDPMLNCTEVDLAQSLPRLRQRFPGFVVDSKFTAKARGEDLVRALATSQ
GISMTEAREEMRDFLYLESLRAELSLTR
>gi|99081186|ref|YP_613340.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MQERDPKKLISIAHANGDQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYDA
LKKLAVGLQISVPQLFTPPQRDQVNGRMIVTKFGEGSAHATATYEHELLADGLTRKNMLPYRARVRARSM
DEFDGWVRHDGEEFMYVLTGVVKLYTEFYEPVEMRRGDSAYYDGAMGHNVISVSSEDATILWVTSLNQM
>gi|99081187|ref|YP_613341.1| AMP-dependent synthetase and ligase [Ruegeria sp. TM1040]
MLSIFDTGAPPACPPAFNLAAHVLRHAANRAGHPALVIAGPEQDQIWTYAAFERAVRGTARGFLESGFEP
GDILLMRLGNTVEFPITFLAAILVGIVPVPTSSQLTKREVARMVEDLSPAGIVSAPDIATHPHSRAVSLD
RLRAMQSCPPADAVLGDPDRLAYIVYTSGTGGSPRAVQHAHRAIWARQMMIRDWYDLSRNDRLLHAGAFN
WTFTLGTGIMDPLSVGATAIIPSADTDLLDLPRVLTRTQATIFAAVPGVYRKILKCDTLPVLPDLRHGLA
AGEALSGDIRDGWKDRIGTPIFEAFGMSECSTFISSAPHRPSVAQSMGAPQRGRRIAIIGEDGPAPIGEE
GIIAVHRSDPGLMLGYLNAPEETRARFDGEWFLTGDRGIMRADGQIIYCGRNDDMMNAGGFRVSPLEIET
VFATHPGLSQFAAAEVEVKPGVHIIVGVFKGREDVTEMALQAFAQERLAAYKRPKTYKRLAEFPTNPNGK
LLRRALPDLFKD
>gi|99081188|ref|YP_613342.1| DSBA oxidoreductase [Ruegeria sp. TM1040]
MTEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDRRTYLETKFGG
KDNAVKVYAQIAEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQSDVVDALFKAYFVEGKDIGDP
VVLADLAEQAGMERAVVERLLSGDSDAEDIRARDAHSRKMGVNSVPTFVIANQHVVPGAQQPELWAQVIA
DIRAQLEQSAAASDSPEEGDAVH
>gi|99081189|ref|YP_613343.1| major facilitator transporter [Ruegeria sp. TM1040]
MIEKRKKALPQGEFIALIAMMFATIAFSIDAMLPALPEIGASLSPDDINQAQLIISSFVLGMGVGTFFTG
PLSDAFGRKPVIFVGSGLYCLGALASFFSQSLETILISRLLMGLGAAGPRVVAIAIVRDLYVGRDMARII
SLAMMIFTLVPAFAPLLGSGIIAVSSWRGIFVAFAVFSLITVLWMSIRLEEPLPRDKRRPFRLPQLMGAL
REMVSHPTVRLSIMAQTFCMSMLFTVIIMVQPVYDVVFARSESFPFWFMMVALMAGTASLLNASLVGRIG
MRRMVTWALGVQILISTGVFALTQLSLGEPTSFYIFVFWQTSVFFMVGLTLGNLNAIAMEPMGHIAGMAA
SVMGALSTVAAAVIAAPIGLLFDGTIIPMVGGVLATAGLAFIVMLWMGRVEAAATPA
>gi|99081190|ref|YP_613344.1| transcription-repair coupling factor [Ruegeria sp. TM1040]
MSQQSVVMGGAPEGYDARLVLKEMARSAGPVLHIARDDKRLEAMRAALRFFAPEIPVVIFPGWDCLPYDR
VSPNADISAARMATLAALVHGLPDQFILLTTLNAAMQRVPAREVLKEAAFSARVNSRIDEDALRKFLVRM
GFSQSPTVMEPGDYAIRGGIIDIFPPGESGPVRLDLFGDTLDGARRFDPATQRTTEKLEVVELAPVSEVI
LDEAAITRFRQNYRIEFGAAGSDDPLYEAVSAGRKHQGMEHWLPFFHERLETLFDYMPDASVTLDDQLTP
ARLARWDSIVDQYETRKIAMDTKGRMDSVYKPTPPRLLYLDDTTWETQIDAHRAVQFHPFPQASGPGVVD
AGGRIGRNFSPERQQENISLFGALADHIKARMTKGPVVVASYSEGARERLSGLIEDEGLAETIAVSDGRR
IGKSGLHLAVWALEHGFEAPDMTVISEQDVLGDRLIRKPKRRRKAENFLTEAQSLSPGDLVVHVDHGIGR
YIGLEVVTAAGAAHECLLLEYAEESKLYLPVENIELLSKYGHDEGLLDKLGGGAWQAKKARLKERIREMA
DRLIRIAAERALRKAPAMDPPPHAWEEFSARFPYQETDDQLRAIEDVISDLNSGQPMDRLICGDVGFGKT
EVAMRAAFVAAMSGLQVAIVAPTTLLARQHAAAFKERFRGFPLEVRQLSRFVTSKEASQTREGMAKGTVD
IVVGTHALLAKNIRFQNLGLLIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSI
IGTPPVDRLAIRTYVTEFDAITIREALLREHYRGGQSFYVVPRISDLPEIEAFLQEQLPELSYVVANGQM
AAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGRSKTRAYAYLT
TKPRQRLTDSAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQSGQMRDVGYELYQSMLEEAIAK
IKSGEVEGLVEGDDQWAPQINLGVPVLIPEAYVPDLDVRLGLYRRLSSLTTKVELEGFAAELIDRFGKLP
KEVNTLMLVVRIKAMCKKAGIAKLDGGPKGATIQFHNDKFASPQGLVEFIQSQNGLAKVKDNKIVVRRDW
RKDSDKIKGAFAIARDLAEKIIAERKKNR
>gi|99081191|ref|YP_613345.1| hypothetical protein TM1040_1350 [Ruegeria sp. TM1040]
MGNPNTLDLFSLIFELIDLRSFSNLWYWIALAVLWSSASHWVLGVPFDMVARAAKHGGSAAQDLQDAVRI
QVNRLLYISEVSGFALTAFAFFMITTLVLLGFYYRVEFAQAVVLMLIPMYVVGLINLRAARALRTPHDID
ALRKRLTRARVLIQLVGVISIFVTALWGMYQNLTFGALG
>gi|99081192|ref|YP_613346.1| delta-aminolevulinic acid dehydratase [Ruegeria sp. TM1040]
MQPMCTGTEYETEMPHISASFPASRPRRLRASAALRDLTRENELSVNDLIWPVFVRDGEGIEEPVPSMPG
VVRRSVDKVVEAAVEAQALGIPAICLFPYTDPSLKTEDCAEAWNPENLCNRAIRGIKAAAPDLAVMTDVA
LDPYNINGHDGFVIDGEIRNDETVEALVKMTLAQAEAGADIIGPSDMMDGRIGAMRSALERKGFQNVTIL
SYSAKYASGFYGPFRDAVGASGALTGDKKTYQMDPANTNEALRMIERDLREGADMVMVKPGLPYLDICHR
VKETFQVPTFAYQVSGEYAMIQAAALNGWIDGEKVMLESLMAFRRAGCDGVLTYFAPQVAKLLNG
>gi|99081193|ref|YP_613347.1| twin-arginine translocation pathway signal sequence domain-containing protein [Ruegeria sp. TM1040]
MSTSKSRLSRRAFTASGLAAIGATAACSNGIGNTNDVKIDARVNATLNQMYDRYPGTRDLAQKSAGMLVM
PLVTEAGFIFGGAYGRGALRINGATVDYYAALKGNAGLQLGAQQYSHVLFFMTDAALARFRRSSGWTAGA
DLEYVVIDEGDALTADTNTLTAPVVAAVFGQAGIRIGATIEGSKYTRIIP
>gi|99081194|ref|YP_613348.1| 3-hydroxyisobutyrate dehydrogenase [Ruegeria sp. TM1040]
MAKIAFLGLGVMGYPMAGHLQKAGHEVTVYNRTTAKAEGWAAATGGRSAPTPREAAQNADFVMACVGNDD
DLRSVCLGEDGAFAGMKPGAIFVDHTTVSAEVTAELYARAKDAQLGFVDAPISGGQAGAENGVLSVMCGG
DAADYDKAAPVMEAYARICRRIGESGAGQMTKMCNQIAIAGLVQGLSEALHFAEKAGLDGRAVVEVISQG
AAGSWQMANRYETMLDDEFEHGFAVDWMRKDLGICLDTADDIGASLPVTALVDQFYKDVQKLGGGRWDTS
SLIKRLRALG
>gi|99081195|ref|YP_613349.1| penicillin amidase [Ruegeria sp. TM1040]
MARLFRWLLRLTAGTILLGILGAILVYFLAAQSLPDYDKEIALPGPTAPVEIVRDNANVPHIFGSFGASD
EDVFFGLGYAHAQDRLWQMAVMRRTAQGRLSEVFGPRTVRTDSFLRRLDLYGAARSSVSAQSPETLRALQ
AYAAGVNARLQEINEDALGRGAPEMFLFNMPIAPWQPADSIAIMKLMAVQLSSNMQEEILRAQTSIALDD
PKRLEDILPDAPGSGTATLPEYTELFPGLPGFRGLEEQRRAQTAHAALMPLAPRGLGGASNAWAAAPNRS
AAGGTLLANDPHLKLTAPGTWYLARLELGTGGVIGGTIPGIPAVLTGRSQQLGWGLTSSYLDDQDLFIEK
INPDNPQQYLTPNGYKDFTSRPSIVQIKGNAPLTLTLRWTENGPVLPGSLFELSTITPPGHVVSLGWTAL
SREDTSMTAALDLMRAENVAQAIAAGENFIAPSQNITLADHDTIALKTVGVMPDRDLRNQSRGRLPNQGW
RRENRWQGRLPYAANPEFIAPSGGILGNTNNKLLERPFPNHVSYSWGDTQRINRWRRLMQSREVHTRDSF
IEAQLDTVSYSAQTLLPLIGADLWFTGEAAPNGTPERQRQIALSLLAEWNGEMNEHLPEPLIYASWVRAL
QKRLIEDDLGPLADAFDRVEPLFLERVFRNIDGAAAWCDVAQSAPTESCTDMARLALDDALVYISENYGS
TLESLRWGDAHQATQDHEVLGEVPFLRYFVNIRQSTSGGDNTLQRGLTSGEEPAPFNNVHGAGYRGVYDF
ADPESSVFIIATGQSGHFLSRYYDDMAQYWRRGEYIPMSLDEKLARAASVGVTRILPRN
>gi|99081196|ref|YP_613350.1| GTP-binding protein, HSR1-related [Ruegeria sp. TM1040]
MEHDRKQTRAWVLHPDIKSDRDRRDAVPALEEGVALAAALPDLEVVGSTVVGLPKAHPGMLFGSGKIEEL
KTLFKAEEVELVLIDGPVSPVQQRNLEKAWKVKILDRTGLILEIFSDRARTREGVLQVEMAALSYQRTRL
VRAWTHLERQRGGLGFVGGPGETQIEADRRAIDEQLVRLRRQLDKVVKTRTLHRAARAKVPYPIVALVGY
TNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRRVELPDGPEVILSDTVGFISDLPTELVASFRATLEEVL
AADVILHVRDISHSDTEHQAEDVEQILSSLGVDEDRTVIEVWNKIDQLSEEEADACRQRADRNDSLYAIS
AITGEGLPQLLHDIAMKLQGVRVDEVLTLDFSQGKQRAWLFKQDVVQEENQTDTGFEISVRWTEKQKAQY
AAL
>gi|99081197|ref|YP_613351.1| RNA-binding protein Hfq [Ruegeria sp. TM1040]
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHAISTIMPAQPI
SLYEGEDSN
>gi|99081198|ref|YP_613352.1| cation transporter [Ruegeria sp. TM1040]
MIRRPLKQVRGVLRLPLLLLIWGVFAIAMWIPAVHAVIVDDHQTSQSFFYSGIVGLTLVAFVGLSVSNRV
PRYGMPGQLMTLLATFVLLPLYLAIPLQDALKNTSYLNAYFDMVSALTTTGADIFDRPGRVPDSVHLWRV
LVAWLGGMFMWIAASAVLAPLSLGGFEVTTRAEPGRSDAILRESQRPDPRRKLIIVTRALAPVYAGLTFA
LALLLMLCGESGLVAVSHAMSIMATSGLSPIGGIQDAQAGLAGEMIMFLFLLFALSRLTFSSDTVAVGHG
RLDKDPEFRSGILIILGVPMLLFLRHWLASLEVNASDDWGMALTSLWGAIFTVASFLTTNGFESAYWFSA
QEWSGLETPGMILLGLAVMGGGVATTAGGVKLLRVYALYLNGLREMERLVLPSSVSGEGRGNRRLQSNGA
FVAWIFFMLFALSLTLISVALSAFGIPFEQAMILAVAGLSTTGPLVEAAGQVPIELNLLDAPAKLILCFA
MVLGRLETLAIIALLSPNLWRN
>gi|99081199|ref|YP_613353.1| potassium transporter peripheral membrane component [Ruegeria sp. TM1040]
MKVIICGAGQVGWQIARHLSGEHNDVTVVDNNPDLVRRATDTLDVQGIAGFASYPDVLDRAGARDADMII
AATHSDEVNMVTCQVAHSVFAIQRKIARLRAKSYLNAIYSDLYRRDHLPIDVVISPEREVAAAAMQRLRA
PAAFDTEVFMDGRAQLLGINVEADCPVVNTPLRQLTELFSTLRAIVVGIRRDGSLFAPEPGDQLFVGDAA
YVFCHADDVSRTMEVFGKTEKRQERVVIVGGGNVGLEVAKALEARTRRTRAKMIEKNRKNAEVAAEALER
TIVLNGDGLDRGLMIEAGIDKADAMLAVTDDDKTNMLAAVRAKTEGCPFAIALINDPTLLPLLPHLGIDA
HINPRATTVSSILRHIRYGRIRQVYSIGDAEAEVIETEVLSTSPMAGQAIRDIDFPEGVLVGAVSKNGEV
MRPSGGLRIEAGDTIALFAMAADVREVERLMQVSIDYF
>gi|99081200|ref|YP_613354.1| two component, sigma54 specific, Fis family transcriptional regulator [Ruegeria sp. TM1040]
MSDILIVDDERDIRELVSDILEDESYATRKAANSEECMAAFEDAPPALLILDIWLKDSQMDGIDILKTVK
RDYPEVPVVIISGHGNIEIAVAAIKQGAYDFIEKPFNIDQLMVVIRRAMETSRLRRENTDLRRKDVGATD
MVGTSPAFRALTSQLDKVTKSNGRVMLTGPAGSGKEVAARYIHANSHRASEPFVTVNCASIEPERMEDVL
FGRESSERGVEPGLLEQADGGVVFFDEVADMPPGTQSKILRVLVDQQFVRVGGTEKVKVDLRVISATNRD
LEQEIKDGNFRQELYHRLNVVPICVPSLSDRREDIPLLAEYFIQGFNQTQGLPLRALSEDAVALMQTMTW
PGNVRQLKNLVERVLILGETSGPIQAKDLPSEEEKVETEGRVVLSGALATLPLREAREAFEREYLLTQIN
RFGGNISRTASFVGMERSALHRKLKSLGVVTSNKAGARVARVESEEATEETA
>gi|99081201|ref|YP_613355.1| multi-sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MAQLSHIRSVYLWLGALDRWRKTRRARNITTLGLVLLGPIMALVTFLVIGPFGQNASSPALRLILLADLV
YVLSIAALVLSQIGRLIAARREKSAGSRLHLRLIGAFAFLALVPTVTVAVFAVLTVNVGLEGWFSERVRD
VIGNSVKAAEAYERQQRQDLEQDALALARFLDRSRNKNFFMSDGQLRQVLSQGQLQIQRGLQEAYVINGI
GAIQTRGERSYEFDFEEPTDAQIAAAESEGLHLIQDWDNSEFRALVRLNAFVDRYLYVSREVDGELLNLL
DDTQETAHLYQQLESERGRVLFEFGLLYLGFAVILILAAMWLGMWFAERLSRPVGRLTVAAQRVGGGNLS
VQVVEENGDDEIAQLGRYFNQMTQQLQAQRETLLQNTHQIEQRRRLFDSVLSSVTSGVVGLDAKGCVTFV
NTSAKRLLDWREDQKSLALAVAIPEFGPLFDDLVKGGSNNAQGEIKVTRQGQLENLLVRMSRRHGDDNTL
EGYVVAFDDVTDLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFAPKLSEEQSDQLQSMTDVI
VRQTNDLRRIVDEFSKFARMPEPDRHEEDLGALVHSAVLLQQAGQPDLKIHAQIPDHPLNVDVDATMIGQ
ALTNLIKNAGEATETLRKKGVEPGYAPEIRVDVSSDDSGFVITIADNGIGLPADRARLFEPYVTTRDEGT
GLGLPIVKKIIEEHGGSLVLEDAPIFDGMSHQGAMAVIRLPALAPGNAVQKQTIVAGLT
>gi|99081202|ref|YP_613356.1| two component, sigma54 specific, Fis family transcriptional regulator [Ruegeria sp. TM1040]
MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVMMPDGNGLEMLPKIAQ
DRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPELMKRTAKALTEKRSAQSTSHVEVVEERPDEL
PLVGRTEVMQTLYRLIARVMNTDMPLLITGESGSGKSLIAKAIHDFSDRRTLPFVVAEASDLIELEGPSR
LLSQVKGGTLLVDELVDLTDEAQARLVRMMDSPGDHAPRFIATSSQQDLAEQIEAGKLRQDLYYRICGTE
LAVPALRERVEDIALLCEHFLTRADAEGGPRRMLSDEARDLLRHYSWPGNVRQLENIVKRLALTARGDTI
SKSEVAAALGPQSTGVAPVMGGGASNEKLSESVARHLQRYFDLHGDMLPPPGLYARLLREVEAPLIEISL
AATGGNQAKCADLLGINRNTLRKKITDLDIEVTRRRKLM
>gi|99081203|ref|YP_613357.1| signal transduction histidine kinase, nitrogen specific, NtrB [Ruegeria sp. TM1040]
MNDASNPHSNDCDIWASLPVPAFLVDEHNCIEDVNSAAEGFINSSRKSLIGKKIWQKVAIESSIELAFDK
AREQGTPLFVNDVDVGARERAPLQCAVQIAPLHGHPGHMLLMLSPRELAGRMTQTHSAKSAAQSAIGMAE
MLAHEIKNPLAGITGAAQLLSMNLSTDDLELTDLIVSESRRIVKLLEQVEQFGNLSEPDFKPVNLHDVLD
RARRSALLGFGAHMKIVEKYDPSLPLAWGDPDQLLQVVLNLLKNASEAAGSAGGTITVRTFYEHSFRLRR
SDGQGKLLPLQIEISDDGPGLPEKIRDDIFEPFVSGKENGTGLGLALVSKIIGDHNGWISVRSEPGNTTF
RLSLSRVPREQK
>gi|99081204|ref|YP_613358.1| dihydrouridine synthase TIM-barrel protein nifR3 [Ruegeria sp. TM1040]
MSFSVGPTHLDPPVALAPMAGITDRPFRDLVRSFGAGLVVSEMVASQEMVQAKPGVREKAELSADVENTS
VQIAGRDAYWMAEAARQVADRGARMIDINMGCPAKKVTNGYSGSALLKTPDHALSLIEAVVQAVDVPVTL
KTRLGWDDNCLNAADVARRAEAAGVQMVTIHGRTRCQFYKGHADWAAISEIKNAISVPLLANGDIVDAKS
AGKALSDSGADGVMIGRGVQGRPWLLAQIAHDLWGTAAPDVPEGRAFIDLVSKHYEAMLAFYGAELGLRV
ARKHLGWYMDEAGTPAALRREVLTAKSPSDVLRLLPSALQGTEQETAA
>gi|99081205|ref|YP_613359.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Ruegeria sp. TM1040]
MTLAVLIVAAGKGTRAGGGLAKQWRPLAGRLVIDWTIEAFQRAGCGTIMVVRDPDNEHAIEALAPYPELL
LADGGPSRSESVRNGLIALQEIGVERVLIHDAARPCVCPQVIQQVLDALDDTPAAAPGLAVTDALWTGAD
GHVTGTQDRSALFAAQTPQGFHFDAILAAHMRHDGTAADDVEVARQAGLAVRITPGDVNNIKITRPEDFS
RAEHILRSTMDNIPDIRLGNGYDVHRFGPGDHVMLCGVQVPHERGLQGHSDADVGMHAVTDALYGAMAEG
DIGRHFPPSDPQWKGAASDIFLRHAVELARSKGFTINNVDCTLVCEYPKVGPHAEAMRARMAEIMGMDMG
RLSIKATTSERLGFTGRKEGIAALATATLVRA
>gi|99081206|ref|YP_613360.1| phosphatidylglycerophosphatase [Ruegeria sp. TM1040]
MTLPQLLGTCCGIGYFRPAPGTWGSLAALPLTYVLHVTGGFPLLAVFTVASVLVGLWAAKEMTRGQEDLD
PSEFVLDELAGQMLALWAISLPAWLHGLEITALWPGWVAGFLLFRLFDIWKPGPVGWADRKKGPFGVVMD
DVIAGGMAAVGVAMLAGLSHGVLGL
>gi|99081207|ref|YP_613361.1| CinA-like [Ruegeria sp. TM1040]
MNIKDLLRAAQSKNATIATAESCTGGMVAAALTDIPGSSAVVDRGFVTYSNAAKMQMLGVRPETLREFGA
VSEETAREMADGALKEAGTQLAISVTGIAGPGGSEHKPEGRVCFGLAQIGAETRTELVEFGALGRDKVRL
ASRDHALAMLMQALSDSGA
>gi|99081208|ref|YP_613362.1| cyclase/dehydrase [Ruegeria sp. TM1040]
MPTHSETRPMPYSAQQMYDLVADVGSYPKFLPWCAAARIRSRTPQGASEVMEADLVISFKVFRERFGSRV
VLHPNEHKIDTEYLDGPFRYMKSNWAFQDRADGGCDVSFFVDFEFKNAVLQGIIGVVFNEAMQRIVRAFE
RRAAELYG
>gi|99081209|ref|YP_613363.1| hypoxanthine phosphoribosyltransferase [Ruegeria sp. TM1040]
MSERPYVIDVMISAKAIAARIEELCGDITAEFGDTDKLVVVGLLRGSFVFIADLVRELDLPIEVDFLEAS
SYGDGMESSREVRILKDLRGAIEGRDVLVVEDIVDTGHTLNHVISLLKSRKPARLKSIALLDKPSRREVD
FRADWIGFEIPDEFVVGYGIDFAQRNRNLPHIGKVRFTEV
>gi|99081210|ref|YP_613364.1| hypothetical protein TM1040_1369 [Ruegeria sp. TM1040]
MSYSKLIPSLAIAGLTLAPLAALAGPPKWAPGHKNSAAHYAPGQVKKLHAHDQYLSGAWDYVTDYQRWGL
QPPAPGHHYVRKDGEILEVVKDTLAIVGAVAVVDALID
>gi|99081211|ref|YP_613365.1| peptidase M20D, amidohydrolase [Ruegeria sp. TM1040]
MTPDELDRLIALRHALHSAPELSGAEQETAARILSELQRLNPDQILTDIGGHGIAAIFDGVAPGATVAIR
CELDALPIQEESSLSYISQAPGKAHLCGHDGHMVMVLAVAEEMTRQRPASGRVVLIFQPAEETGQGAKAY
REDTKFPEIRPDMVLSLHNLPGLELGHVSLPVGPANCASRGARIRLTGRTSHAAAPQDGRSPALAIAQLM
QKLAALATGSALDEDYALTTVTHATLGEPTFGIAPGVGEVWVTLRTATDRKMQELIEAVQIMVESATADL
GLGHVITYHDVFDACTNAPDAVQVIEAACHAGAVPITLTESPQAFSEDFGQFGKSARTAMFWLGAGESHP
QLHNPDYDFPDALIPIGSGIFIRAIRQLLG
>gi|99081212|ref|YP_613366.1| lipoyl synthase [Ruegeria sp. TM1040]
MLRPNTCRSHKEDPVRDLKIPEQRHPEKAHRPDNAQPKKPSWIRVKAPGGKGYAETHKIMRENNLVTVCE
EAGCPNVGECWSQGHATMMIMGEICTRGCTFCNIATGRPDTLDAFEPGRVAHAVQKLGLNHVVITSVDRD
DLEDGGADHFAQTIRAVRHRSPQTTIEILTPDFLKCAPEVLETVVEAKPDVFNHNLETVPGLYPEVRPGA
RYFHSLRLLQRVKELDPSIFTKSGIMVGLGEQAPQVKQVMDDMRAADVDFLTIGQYLQPTPKHHAVDRFV
TPEEFESYEKAAYGKGFLMVSATPLTRSSYHAGDDFAKLRAARNAKLGLA
>gi|99081213|ref|YP_613367.1| hypothetical protein TM1040_1372 [Ruegeria sp. TM1040]
MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLMDGALQRLSEL
CDADSDPSGEISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGSEVHKTVIERSLAEILALRDW
VSCFSSGRVYRYRLSKDGRSALAQLTAKAEACHRSRMETTTQSGLAGQIAEFSQSDALNAKRARYGQQDT
PLQTLARLVDRDGNSFLSKEMVRAGERLREDFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAF
QRATTALCALGPGLSDIALRCCCHLEGLEVAERELGWSARSGKIVLRIALQQLHHHYESLPPQTQMIG
>gi|99081214|ref|YP_613368.1| hypothetical protein TM1040_1373 [Ruegeria sp. TM1040]
MQDLRTRLTTLHRPRLLARTARIGADDYIRQRDLKRLLPSTPSQGTGAILMQLLDLEATQERARLGQNPG
YSFARHVAVLTALSAESRLYLASRSQPRRATKNGAPQDAV
>gi|99081215|ref|YP_613369.1| trimethylamine methyltransferase [Ruegeria sp. TM1040]
MTDAAPRRRSRGGGGAARRAERTSVKIETAKYIERNIPNYEVLTEEALEVIETNAETILEEVGVNFVDNP
AALERWRDAGADVQGERVRIPRGLARKLCETAPSQFTQHARNPEKSVEIGGKNLVLAPIYGPPFVRDANG
GRRYATLEDFQKFVKLGYMSKWLHHSGGTVCEPTDVPVNKRHLDMLMAHIELSDKPFMGSVTEPSRAQDT
VDMCGILFGKDFVQENTVTTSLININSPMTFDDVMMGALEVYAKNNQACIISPFIVGGAMAPVTIAGTLT
QVLAEVLAGVAYSQLIRPGAPVIFGAFVSSIDMNSGAPTFGTPEASMVTYGAGQLARRLNLPFRSAGSFC
GSKLPDAQAAYETANSLNMGLLSGVNFMLHSCGWLEGGLVADFEKFVMDADQLGVLHGLAKGIQMDENGQ
GLDAIREVGPGGHYLGCAHTQANFKTAFWKSNLLDYKPFEQWEEEGARDTYKLASARVEHLLATYKQPEL
DPAIREALMAYIAEKKASMPDAFM
>gi|99081216|ref|YP_613370.1| GMP synthase [Ruegeria sp. TM1040]
MTETAHDRLLIIDFGSQVTQLIARRLRELNVYCEIHPYQNVTMDFVREFAPKAVIFSGGPDSVTREGSPR
APQEIFDYGVPILGICYGQQVMMHQLGGTVQSGHGTAEFGRAYVTPTEERIDMLSGWFLDQTEQVWMSHG
DHVSEIAPGFKVYGTSPNAPFAITADLERNFYAVQFHPEVHHTPNGKTLYENFVRLAGFSGDWTMGAYRE
QMVETIREQVGDKKVICALSGGVDSSVAAALIHEAIGDQLTCVFVDHGLLRKNEAEEVVGMFRDHMNLQV
IHADETELFLGELEGQSDPETKRKIIGKLFIDVFQKYADQIEGAEFLAQGTLYPDVIESVSFSGGPSVTI
KSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGRELGLPDSFIGRHPFPGPGLAIRCPGEITRDKLDILR
EADAIYIDQIRKHGLYDEIWQAFVAILPVRTVGVMGDGRTYDYACALRAVTSVDGMTADYYPFSHEFLGE
TATRIINEVKGINRCTYDITSKPPGTIEWE
>gi|99081217|ref|YP_613371.1| hypothetical protein TM1040_1376 [Ruegeria sp. TM1040]
MTQTATDSAAAQQNALLRAAIWMIGAILSFSAMAIAGREAGLTLDTFEIMMYRSLVGVLVVAGAITLMRR
WHLVSSERLTQHGLRNMAHFTGQNLWFYAVSVIPLAQVFALEFTSPIWVILLAPLFLGEKLTRMRALAVA
LGFVGILIVARPSPQTFNIGLACAAGSAVFFALTNIATKRLTRSESIWSIMFWLTAMQLVLGIVFAGWDM
DIALPDAQSLPYLLVIGCAGLSAHFCITNALSLAPAALVVPIDFARLPFIALLAWLIYGESVEIWLFVGA
ALILIGNFINIVSSRQQ
>gi|99081218|ref|YP_613372.1| membrane protein involved in aromatic hydrocarbon degradation [Ruegeria sp. TM1040]
MKHYIAASVASTLLATTAMASGLDRTGQPIGLIFEEGTYAEFSFATTSVDLSGNDRTSLNPAGSASGDVG
ERFNMLSGGFKTDINDELSLAIIYDQPWGVDVDYPTTNGSALLGGTMAQADSNAITALLRYKLNDRFSVH
GGLRYQEIDGEITLAGAAYNATVPLSGYNVKVDREGGFGWVAGVAYEIPDIALRFALTYQSEIEHDFNLT
ETTPAGVPVIGGTTLNTTTTTKTPQSVNLDFQSGVAKDTIVFGGIRWAEHSVTDLVVLSALGGRDLIDLD
DSITYTIGVGRRFNQNWSASLAYIYEDADGDNLVSPLAPTHGMEAIRLGVQYQTEKMKIGAGVRYTKLGD
AVASPGGTPVANFNDNDALSFAVKVGFYF
>gi|99081219|ref|YP_613373.1| hypothetical protein TM1040_1378 [Ruegeria sp. TM1040]
MSGLGKTYISNILRRSGQWFHYSADYRIGTRYMGEYIADNAKAEAMKVPFLRDLLLSDSIDISSNITFEN
LSAVTAYLGVPGDAQKGGLPIEEYRTRQDQFRRAEIDALLDTRYFIDRSDRIYGYPHFICDSGGSICEWV
DANDPNDPLLSELSAHTLLVWIKGTEDHTQELIRRFDRAPKPMAYQPAFLTRVWEEYLNENNITDADVDP
HAFLRWTYAQALAHRQPRYEAMAAHWGVTVTADQVAHVQNTSDFEELIASALETRAEQT
>gi|99081220|ref|YP_613374.1| homoserine O-succinyltransferase [Ruegeria sp. TM1040]
MPIKIPADLPAYSVLSDEGVMVMSPDQAARQDIRPIKIGLLNLMPKKIQTENQFARLIGATPLQIEFSLI
RMTEHQTKNTAAAHMEEFYRPFQEVRDEKFDGLIITGAPIEHLPFEDVTYWQELCEVFEWTQTNVHSTFG
VCWGGMAMINYFHGVRKHMLDHKAFGCFRHQNLQPTSPYLRGFSDDFVIPVSRWTEMSQSEIDAAPGLTT
LLGSADVGPCLVEDKAHRALYIFNHFEYDSDTLKQEYDRDVASGTEINVPINYYPDDDPSQRPLNRWRSH
AHLLYGNWVSEIYQTTPYDVERIGLDTTDLRA
>gi|99081221|ref|YP_613375.1| alpha/beta hydrolase fold [Ruegeria sp. TM1040]
MSAILALAVTLGFAGVAGFTALRAPLREAESIANHPPQGQFLNVDGHQIHVVERGQPQGSAPDLVLIHGS
NGSIRDMTFRLSPALEEAYRILIFDRPGLGYSDAISADGTSIQTQAAILQKASARLGAQRPIVLGQSYGG
AVALAWATEFPQHTAAVVSVSGVSHPWDAELPTFYKLTSSRFGSAVIVPLLTAFVPKSYVRDSLKDVFAP
QAVPDGFADHFGLAMSLRRSSLRANAKQRANLLTEVEAMAPKYPDLSMPIEVVHGTADTTVGISIHAERL
VADSRTARLTPLPDVGHMPHQTHTQEVVAAVHRAATRANLR
>gi|99081222|ref|YP_613376.1| hypothetical protein TM1040_1381 [Ruegeria sp. TM1040]
MTLPFDGAISQYFENEAPKEVRKAIEDAGKDDILSPSYPYDEELSKGDYKDQYRALQVELVKLQASLKAS
GQRVAIVFEGRDAAGKGGTIKRFRENLNPRGARVVALGKPTETEATQWYFQRYISQLPAGGEIVFFDRSW
YNRGVVEKVFDFCTDSQRRHFFSQVTDFEKMLVDEGIQLFKFWLNVGRAEQLRRFLARESDPLKQWKLSW
IDVEGLKRWDAYSEAIQETLTLSHRPEAPWTIVRSDDKKRARLEAIRHVLLSVDYANKDRAALGSADPLI
CGGPEIWDG
>gi|99081223|ref|YP_613377.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MAKRGYHHGNLRQALVESALRLIEVKGPTGFTLSEAAKQAGVTPAAVYRHFEGREDLIAEAARQGFLMFA
DLLQHAYDKYQSSALAAFEATGRAYLAFARKHPGHYIAMFESGISANRTPELAEAASRARGVLEQAAAKL
SQHIPAEKRPPASMFSAHVMAMSHGVVELYARNAPGTASPYAPEDLLESGIGVYLRGLGLIDPDS
>gi|99081224|ref|YP_613378.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MRLRLVMLLVIGPMMALSSYLAYDELHIQWDKYAHARLTKEKTLEESLMNDVVHEMQKERGFSAGFIASQ
GKNFPTELTEQRRLTDEAIADSMSRIPVIEVAKPDMTAAVRERIGQLQDMRQRVDSLGLSVPEMAKFYTS
TIGLMLEMARPATEGEPAERLRLLEEARVLLASAKEAAGLERAMGATGLGKGFDLALHDRFVHLGGEQGA
YLHEVDALVDLNVWLSELLSTDAYKEIAETRSTLVRGYSTGDFGGLTAGEWFQISTNWINTLREQEIEIG
ALIDRIATDIESSSQTAFRAFAAVTLISLLLAFSIAVYMFGRVIKRVGELTDVVKAFTRGDYSVFVQGIE
GKDELSVMAHAIYSFKQETLKTLREAEALEAEQDKRKKEQDHIVGELRGAFTRLSVGDLTVEFTEPFPED
YEDVRADFNQTIGRLRESMEELVDTAGSLCTGAAEIDQAASDLSQRTESQAATLEETAAALEEMTASVKS
AADGARNAERTTEEARSEATQSGTVVKDAVEAMSEIEKGSQQIAQIISVIDDIAFQTNLLALNAGVEAAR
AGEAGRGFAVVASEVRALALRSSDAAMEIKSLIGNSSEQVERGVDLVRHAGEALESIVGQVTHISTLVTE
ITKGAVEQSTGLEEINTGVVQLDQVTQQNAAMVEETTAASSILNSNARQLGEIVQRFKIRGDQAADNMPQ
LSRAS
>gi|99081225|ref|YP_613379.1| 30S ribosomal protein S9 [Ruegeria sp. TM1040]
MADQINTLEELGAVAGVETAAEELAPREPVRDELGRSYATGKRKDAIARVWIKPGSGKVEVNGKEINKYF
ARPVLQMILRQPFTVAGVEDQFDVYATVKGGGLSGQAGAVKHGISKALQLYDPSLRGALKAAGFLTRDSR
VVERKKFGRRKARRSFQFSKR
>gi|99081226|ref|YP_613380.1| 50S ribosomal protein L13 [Ruegeria sp. TM1040]
MKTFSATPADIDKKWIIIDAEGVVLGRLASIVATRLRGKHKPSFTPHMDMGDNVIVINAEKIQMTGKKRE
ENFYWHTGHPGGIKSRTKQQILEGAHPERVVMQAVKRMLPGNRLSRQQMTNLRIYAGAEHPHEAQSPEVL
DVKSMNKKNTRS
>gi|99081227|ref|YP_613381.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MGTIWPSTLTGSLTEKPGPKYKRVADTIRLAVESGTLQVGAKLPPVRELAYQLSITPGTVARAYTILTDE
GILQAEVGRGTFVAERETAVMDDVWSRQLHLLERSNPNHVSLFSPRLVDVGQVKLIREALRKAADCDRLA
LLNYPTRDAYQPVRQAVVDWLSDTPLGPLSERDVVLTHGGQNAVMTVMQAILKESNPTILVEDLSYAGFR
RAAEILRAKVVGVAIDENGIVPEALEAAIKKSGASVLCTSPEVHNPTGAFTPLERRKEILAILRRHNVQL
IEDDCYRMGEARAPTYRALAPELSWHVTSISKSLTPALRVGFAIAPVGKSADLRRVAEYGFFGLAQPLAE
VTRLLLSDPRSKKLVQTVRDEMAEYVRVAVNALGAFELTWDSQVPFLWLRLPSGWRAGAFTRAAEGQGVQ
LRSADEFALRDGRAPNAVRIAVNGHVTLARFEDAMLRLRMLLDNPPEQISV
>gi|99081228|ref|YP_613382.1| hypothetical protein TM1040_1387 [Ruegeria sp. TM1040]
MPRGSGSPERKSSFAHGFLAMEANIAQLMSIEAAQLAAGAFSDRPFGDQNRKSNRCFRNHRQGRAVGQIS
EMRRVFCHICHGLSHILY
>gi|99081229|ref|YP_613383.1| S-adenosylmethionine decarboxylase related [Ruegeria sp. TM1040]
MSDANLFQLGIGLETGAHEEDTARGVPTAIVNSLVEADREDHFIRRDGKVFAGTHLIIEVMKGSGLDCQA
RIEDAFRKMVEVCGATLLHIHTHKFSPQGVSGVAVLAESHISVHTWPEIGYGAFDVFMCGDAQPWKAVDV
LKAAFETDVVEVRELLRGEEIVAKEIAA
>gi|99081230|ref|YP_613384.1| spermidine synthase [Ruegeria sp. TM1040]
MTKEVWNTERLHDHFAQSLRVSEMYYDSKTEHQRLKVFQNGTFGRVLTLDDVVQTTEGDNFIYHEMLTHV
PILAHGAAKRVLIIGGGDGGIAREVLKHASVEHVTMVEIDAGVVDFSKEYLPMLSQGAFDDARLNLVIND
GAVFMKETEDKFDVIIVDSTDPIGPGEVLFTDTFYGHAARALTEDGIIVTQNGVPFMQGDELTNTMRAFQ
ALFQDATCYLATIPTYVGGPMALGWGSHSTKARSVDLTTLEARFAAAGLSPDYYTPEVHKAAFALPGYVK
KLFP
>gi|99081231|ref|YP_613385.1| phenylacetic acid degradation-related protein [Ruegeria sp. TM1040]
MELVFDKDGLSAYLEEVFPQIQGEFSIDALAKGEITMRLNVQERHLRPGGTVSGPSMFALADVSVYALVL
AHLGREALAVTTNASLDFMRKPESGRDLLGQARLLKLGRTLAVGDILLFSEGMEAPVARSTMTYSIPPKR
>gi|99081232|ref|YP_613386.1| tRNA (uracil-5-)-methyltransferase Gid [Ruegeria sp. TM1040]
MWPFMTQELHIVGGGMAGSEAAWQAAHMGVDVVIHEMRPKVETFAHQTGNLAEMVCSNSFRSDDDEQNAV
GLLHWEMRAANSLIMTTAGEHRLPAGGALAVDRDPFAESVTAKLKALPNVRVSYEEVTDLPTEGHWIFAT
GPLTSPALGEAIQRETGAERLAFFDAIAPIVYAESIDMSQAWMQSRYDKGETEEERTAYLNCPMTKDQYE
AFIDALLAADKTEFHEGETAGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNPHKPDEKAWAVVQLRRDN
ALGTLFNIVGFQTKMKYGAQTDVFRMIPGLENAKFARLGGIHRNTFLNSPTLLDHEMRLKSKPNIRFAGQ
VTGVEGYVESAAMGLLAGRMAAAEILGKDLPQVPQDSAMGALIHHITGGAEAKTFQPMNVNFGLFRPVEG
LKGGRRGRKDRYKAYTDRAKVAWQEWLTNF
>gi|99081233|ref|YP_613387.1| methyltransferase type 11 [Ruegeria sp. TM1040]
MSDTFLEKTYELNTVEETVDHYNRWAESYDTEIAENNYATPGRIADALWSVLPDAEAPLLDFGCGTGLSG
IALRRVGYEQIDGMDPSSEMLKVAQGKGAHRHLSVVDPDSRKPFKSGVYKAVVACGVLGTGAAPASVFGH
LMHCLNRGDLLAFSLNDHALADPSYIGAMNEWLDCGAARLLFKEHGPHLPGLNLNACVYVIEKV
>gi|99081234|ref|YP_613388.1| glutamyl-tRNA synthetase, class Ic [Ruegeria sp. TM1040]
MTFTTRFAPSPTGPLHLGHAYSALLASDFARQQNGRFLLRIEDIDQTRARASWEEQIYQDLAWLGLSWPE
PVLRQSSRLPRYRAALERLSALGLTYPCRCNRADIEAAAGAPQEGVPQFGPDGRIYPGTCRQRPLSDARP
TDVIRLNMKAALARLPALSFIETSEELGGHISLDPEELVQAVGDIILVRRNMGSSYHLSVVVDDADQGIT
DVVRGADLFESTQIHVVLQTLLDLPVPRYHHHRLIRDDQGKRLAKRDDARAISKYRSEGASPQDIRQLVG
LD
>gi|99081235|ref|YP_613389.1| phosphoribosyl-AMP cyclohydrolase [Ruegeria sp. TM1040]
MQKVFNMHDLVKFSPETLKYNEAGLVPCIAQDVESGEILMMAWMNAESVAKTLETGRVTYWSRSRQSFWI
KGESSGHVQELVELRVDCDRDALLAMVRQTGPACHTNRRSCFYTAIRDGEEHEIMTPIS
>gi|99081236|ref|YP_613390.1| hypothetical protein TM1040_1395 [Ruegeria sp. TM1040]
MYEEHGARETQEHDMSGETDLIKLYSTKILALAADIPHLGHLEQADATVKRRSPLCGSTVTVDVTLEDGK
VAQFAQDVKACALGQAAAAVVGAAIIGRSAAEVERARDQLKAMLTEGGPVPEAPFDGLEVLIPARDFKNR
HASIMLALEATLEAMQTAQKADCA
>gi|99081237|ref|YP_613391.1| hypothetical protein TM1040_1396 [Ruegeria sp. TM1040]
MRIEQAIDPNTGLEAGAPGMTAQKKLRTGYETEKRRSDETRKMQAHDQHHDQSGRTESILQQCGLCVAQR
GFELRDHLKTSSISV
>gi|99081238|ref|YP_613392.1| ATP-dependent DNA helicase RecG [Ruegeria sp. TM1040]
MSGRPEQLFPLFAELETLQGVGPKIAEHFAQLHITAPRDLLFSLPYSVVDRRRRETIRGLDLPTTATVEV
TVGRHRPARNRGGAYRIDVTDQETEFQLVFFHGRSRYLTAQLPEGARRVVSGKLELFDGMAQMVHPEHML
PLEEAGDIPDFEPVYHLTHGITQKTMYKAVQSALARVPDLTEWMDPAQKTKQGWPDWHAAISAAHAPATL
EDLGAQAPARARLAYDELFAHQLTLAIARSVERDLPGRRSVATGTLQRKVLATLPYRPTGAQGRAIEEIT
ADMGSERRMNRLLQGDVGAGKTLVGFMALLVAVEAGGQGVMMAPTEILARQHLEGLKPLAEDAGVVLEIL
TGRDKGKDRRAKLESLARGDIHILVGTHAVFQQDVVFDDLRLVIVDEQHRFGVRQRMELAEKGKRADVLV
MTATPIPRSLALTQYGDMEVSILDEKPPGRKPIKTAILSTERMSEVVDHLRRAIDEGRQCYWVCPLVEES
EVMDLTAADERFKHLRAVLGEEVVGLVHGQMPPAEKDAAMLAFQEGRTRVLVATTVIEVGVNVPNASIMV
IERAEIFGLAQLHQLRGRVGRGEAQSTCLLMYQPPLTEGGRKRLEVLRESEDGFVIAETDLQMRGAGDVI
GTAQSGLPRFHIADLERQSDLMAIAQSDARALMTSDPDLSSARGRAARTLLWLLRQDEAIRLISVG
>gi|99081239|ref|YP_613393.1| DNA ligase, NAD-dependent [Ruegeria sp. TM1040]
MDEADARAEFEALQTKIEKADHDYHQKDAPTLSDADYDRLKRRYLALADAFPILAKDGTRVASVGAPAAS
GFGKVTHAQRMMSLGNAFEDQDVEDFAVGLRRYLGLSSEAPLAFTAEPKIDGLSLSLRYEAGKLVQAATR
GDGAVGENVTENARTISDIPQEISGAPEVLEVRGEVYMSHADFEALNARHAETGGKIFANPRNAAAGSLR
QLDAEITRARPLRFFAYSWGELSEPLAETQIDAIERLASLGFQTNPLTRCCEQISELLAHYHAIEEQRAD
LGYDIDGVVYKVNDLSLQERLGFRSTTPRWAIAHKFPAELAWTHLEGIDIQVGRTGALSPVARLHPVTVG
GVVVSNATLHNEDYIAGLDSKGAPIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSRRPEGTERYAFPTRC
PRCDSPAVREEGDAVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFHSDGWVKEPADIFELQ
QRYGSGLQQLKNREGWGEKSASALFAAIEDKRRIEFARLIFGLGIRHVGEVAAKDLALHFRTWSALAEAA
DLARAAALAHRAADEAEIVERQEAQASARRAKISEARNAAVATCAVAPDSQAAWDDLISVDGLGPTVALS
LSDAFANPEERAAFDRLIAHLEIIEPDAPADDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVS
KKTDILVAGPGAGSKAAKAAELGIQTLDEDGWLDLIGQA
>gi|99081240|ref|YP_613394.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MRILLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGHEVLRQLRLSR
IETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSKGHSQSIIKTGKISVNLDAKT
VDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKKLSTATDGENY
IETVWGRGYVLRDPQEDLSAGGPRMAVGA
>gi|99081241|ref|YP_613395.1| hypothetical protein TM1040_1400 [Ruegeria sp. TM1040]
MFLKKVDGPRAVTLPDGTVMTRADLPPQTTKRWVASRKAAVVRGVLYGLIPQTEALRLYNLSEEEFRSWV
AAVADHGEDALKTTRLKDFRNP
>gi|99081242|ref|YP_613396.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria sp. TM1040]
MALDNEAPVNSLGFAKSPAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAALAKKGACCAG
IDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLETAKDLEADC
MATGHYIQRKMGEHGPELHSAEDANRDQSYFLFSTTPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADK
PDSQDICFVPNGDYASVIQKLRPGAAEPGQIVHADGRVLGEHNGVIHYTIGQRRGLGIGGLSEPLYVVKL
DVDQKQVIVGPKEMLATRRVPVREINWLGDAPFTSRDEWHLSVKVRSTRPPRDAIIRPISETEAEVELFS
AEEGISPGQACVFYDPNGSRIYGGGWIWKGQ
>gi|99081243|ref|YP_613397.1| lipid-A-disaccharide synthase [Ruegeria sp. TM1040]
MGLRVFVLAGEPSGDRLGAALMRGLKTLAPDVSFEGVGGSLMQTEGLKSQFPMEELSVMGIAEVLPKYFD
LKRRIQETADAVVAMKPDVMITIDSPDFSLRVAKLVKDASDIRTVHYVAPSVWAWRPGRATKMAKVIDHV
LALLPFEPPYMEAAGMECDFVGHPVVAEPKASEAEIATFRAAFDLGDAPVLLALPGSRRSEVERLADVFG
AALAQFKAKHPDHRIVVPSASHVAPMVREALANWPADSLVLDPADHAPAVFAAHKRAAFATADLALAASG
TVSLELAAARTPMVIAYRFNWLTWQIMKRMALIDTVTLVNLVSDTRVVPECLGPNCTAETIAARLDQVSM
APEAQQDAMRLTMERVGEGGEAPGLRAARAVLARLP
>gi|99081244|ref|YP_613398.1| hypothetical protein TM1040_1403 [Ruegeria sp. TM1040]
MIALIAGRGALPAELIARLPERPMVCAMSGSEPDQVEADVTFRLEQLGSFLEELKSKGITQVCMAGAVTR
PQIDPSAIDGATLPLVPVLQAAIAAGDDGALRAVIGILEQSGFEVKAAHEIAPDLLMPEGVPTKVKPGEI
DKADAERAAVIAFGLSAADIGQACAVRSGQAIAIETLFGTDWMLESLAQRPDGQGGLFYKAPKAGQDRRA
DLPTIGPATVAGAARAGLNGIVLEAEGVIVLDREEVVAACDRHGLFLWLREA
>gi|99081245|ref|YP_613399.1| UDP-N-acetylglucosamine acyltransferase [Ruegeria sp. TM1040]
MSTIHPSAIIEDGAKIGEGCEIGPFCIVGAEVVLGDRVVLKSHVVVTGDTEIGDDTVVFSFSVLGEIPQD
LKFKGEKCRTVIGKRNRIREHVTVNAGTEGGGGVTRIGDDGLFMAGCHIAHDAQVGDRVIVVNSAAIAGH
CVLEDDVIIGGLSGIHQWVRIGRGAIIGAVTMVTNDVIPYGLVQASRGELDGLNLVGLKRRGVSRADITA
LRAAFQMLAQGEGTFSERARRLGDENDSEYVQEIVAFITGQSDRHFLTPGG
>gi|99081246|ref|YP_613400.1| (3R)-hydroxymyristoyl-ACP dehydratase [Ruegeria sp. TM1040]
MSADANPDLKSADIGLIQQILPHRYPFLLVDKVVDIDGYQSARGIKNVTMNEPHFQGHFPGTPIMPGVTI
VEAMAQTSGVMLGVGMDLIGTDMLIYFMNIDKCKFRRKVVPGDVLEMHVETVRGKPGGKIFKFSGRATVD
GELAAEAEFTAMIDRDGKDG
>gi|99081247|ref|YP_613401.1| outer membrane chaperone Skp (OmpH) [Ruegeria sp. TM1040]
MATVPGIGLGGFSPEQNLGIPKSLILTIHSDRLYSESAYGQRIAREMEGRSAVLMAENRRIEAELRAEEL
DLAERRATTDPEAFRALAQAFDQKVQETRTTQEAKFVEITTARDEARRAFRQTSIPILEQIMAETGAAAI
LEQSTVLLSADAIDVTDLAITRIDTILGEGLDASEPDSNQP
>gi|99081248|ref|YP_613402.1| surface antigen (D15) [Ruegeria sp. TM1040]
MVWGKNAACARDARREGAMSVSFKGFLGTTALSAVLAIGLGIAPLPAQSQEFRFTNVRVEGNQRIQSSTI
VAYTGLSRGERVSGGELNDAYRGVFDSGLFESVELVPRGNTLVIKVVEFPTISRISFEGNKRLKDDALGE
VIESSPRRVFSADQAERDAGAIAELYRAQGRLASRVTPRIIRRSDNRVDLIFEISEGDTVEVERVSFVGN
RAFSDRRLRRILETKQATFLRALINRDTLIEDRIQFDRQVLTDFYRSRGYVDFRVNSVNAEVTKERDAAF
LVVDVTEGQQFEFGEITVTSEFADADPDLYRSKLRLKPGVTYSPLLIENAIETLEQLAVRQGIDFLRVEP
RVTRNDRDLTLDVEFAMVRGPRVFVERIDIEGNTTTLDRVIRRQFRIVEGDPLNQREIRNSAERIKALGF
FSESEVDVRQGSTPSEVIVDVDVVEQPTGSFNLGGSYSVDDGIGVAIGISEKNFLGRGQQLSFNISTTED
TEAYNLRFGEPKLLGRDLQFAIDLGLSETESSYSEYDTKEVVFRPSITFDASETTSLQLRYGFEQDEMES
RGLDSNNQPLVGPVLQREIAEGKRTTSSIGATFTYDSRRTGLNPTAGFLVQSGIDYAGLGGDNEYIRATS
KIVAQKLVFNEEVTLRATVEAGYLGWLGDNRSRTIDRFLLTSDTLRGFEPGGIGPRDMSGSYDDALGGNL
YAVARFDAEFPLGLPEELGLRGGLFYDVGNLWGLEDSNADFGSNVVGRDGSFRHVVGFSLLWTTGLGPLR
FNFSKALVKEDFDKERNFDLTIQARF
>gi|99081249|ref|YP_613403.1| hypothetical protein TM1040_1408 [Ruegeria sp. TM1040]
MHTLQRSYEGLDLLVRLNIDRVLFVGAISFAIFAGVWIGSFL
>gi|99081250|ref|YP_613404.1| peptidase RseP [Ruegeria sp. TM1040]
MDAVFLVSQLGGLLYTIGSFVVVLSIIVFVHEYGHYIVGRWCGIHPEVFSLGFGPVLASRVDKRGTRWQL
AAFPFGGFVKFLGDADAASGKDASAISAAERDPELLRKTMHGAPLWARAATVAAGPIFNFVLAAVIFTGV
NLSRGQMQEPFAVGEIKPLPAESYTLQPGDEILSVAGIVTPDFSDAVAWGAFEGGLPVEKVLEYRVVRDG
QEMIARGPYLTPSLVSGVAPRSAASDAGLREGDVIVGVDGEEIFAFSHLKERVETGAGAPLELTVWNAGQ
TREVTLTPRRTDEPTADGGFQTNWRIGIAGGLAFEPARESVSPVAAVGQGVTQVWIMIEQSLSGLKHMIT
GQISTCNLSGPVAIAEISGTLASQGAMNFIWLIAALSTGIGLLNLFPVPVLDGGHLVFFAYEAVTGKPPN
DRAMQILMTIGLTLILGLMIFSVSNDLLFC
>gi|99081251|ref|YP_613405.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Ruegeria sp. TM1040]
MHGVTMKKISIFGATGSIGQSTIDLIRRAPDAYDVVALSGGHNVAQLARDAIELQADIAITAHDARLEEL
RSALAGSGVEAASGAAALVEAASRPADWIMSAIVGAAGLAPGLKALEQGTTLALANKESLVCAGALLMQT
AADHGARILPVDSEHSAVFQALVGERIEEVERIIITASGGAFRDWPLERLKTASLAEASSHPNWDMGQRI
TIDSASMFNKALEVIETREFFGVAPEQIEVLVHPQSLVHALVGFRDGALMSHLGAPDMRHAIGYALHWPD
RNALPVARLDLAAIGQLEFRAPDLQRYPALRLAQEVMRRGGLSGAAFNGAKERALDHFIAGRIGFLDMAS
LTEEGLATLEAQPGLIDASMTLENVTRVDDLARRAVDQVVTQRTG
>gi|99081252|ref|YP_613406.1| phosphatidate cytidylyltransferase [Ruegeria sp. TM1040]
MKTPLSAHASKANRWADLGPRTASAVVLALLGGAAIYLGNLAFALFVSLSVGAVFWEVTRMYRTDGSLLA
LGFGALAAAAVCVASIVPLFLALLVLAVPMVVGTRILEERNLSFLAILVWVLLGGFGLIWMREGMGVTWT
IWLISVVVATDVAGYFAGKTFGGPKLWPAVSPKKTWSGTSGGWGAAAGVGLVFALFVGLPWSLVWISVFV
SMASQAGDIVESAVKRYRNVKDSSQIIPGHGGVFDRFDGMLGAGALCFLIAIIWG
>gi|99081253|ref|YP_613407.1| undecaprenyl pyrophosphate synthetase [Ruegeria sp. TM1040]
MSLVTDSATPRAAGAGDPAPGVGDGPKHVAIIMDGNGRWAQARGRPRLFGHHAGARRVREVVECCPSLGI
KYLTIFAFSTENWKRTQVEVAGLMSLFRRYISKEMKALAAKNVRVRFIGDRVRLDTKLVQLMDALELETA
GNDGTHLTIALNYGGRDEVARATQRLAQDVADGRLDPRDVDEETLPRYLDTHVLPDPDLVIRTSGEARIS
NFLLWQSAYSEYEFIDTLWPDFSSEELARLCRNFGNRDRRFGATKK
>gi|99081254|ref|YP_613408.1| ribosome recycling factor [Ruegeria sp. TM1040]
MSEEFELDTDDLKRRMDGAMANLKTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVPEPRMVTI
NVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYAEHARVSIRNVRRDGMD
QIKKAKADGMSEDDQKFWETEVQELTDKMIKAVDAALETKQAEIMQV
>gi|99081255|ref|YP_613409.1| uridylate kinase [Ruegeria sp. TM1040]
MPQSPEQPDVSSTVSYNRVMLKISGEALMGTQGFGLHPPTVRRIAEEVKSVHDLGVEICMVIGGGNIFRG
LSGSAQGMERTTADYMGMLATVMNALGMQSALEDLGVFTRVISAIRMDEVAEPYIRRRAVRHLEKKRVCI
FAAGTGNPYFTTDTAATLRANEMNCEAIFMGKNGVDGVYDKDPKTNEDAKRYDSVSYDDVLAKRLKVMDA
SAIALARDNNLPLIVFGLDEPGGFRGVLAGEGTYTKVHG
>gi|99081256|ref|YP_613410.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Ruegeria sp. TM1040]
MLDIDKIPADQPVLIAGPTASGKSELALRIAEHSGGVIVNADASQVYDCWRVVTARPSAEDESRAAHALY
GHLSYDTLYSAGHWLRDVTPLLKGTKRPIIVGGTGLYFLTLTEGMADIPATPPEVRAEADTLSLETLAAD
LDPETRARIDMQNRARVQRAWEVLRATGRPLAEWQDDTPPPLLPAKDCTALVVEAERDWLETRIRRRFSM
MIAQGALEEARAMQDRYDPALPSCKAIGVPELMAHLSGALTLEQAEERASVATRQYAKRQRTWFRARMKS
WQRVSPQA
>gi|99081257|ref|YP_613411.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MPFDPKIRGPLDVRPLLQLMSAGSWQVELAHERDCHLVIWITRGQGRVLLDGQCRGFGPHTALCIPARTL
FSLELGRQCIGQVLRIGEDIPCGLPETPMQIRINDMQEQGRINALFDAALREQQVADDHTAKAITSYADL
VGIHLQRLWVRAPENRKPTAARRLCRAYCARLAQDAEGAFNMAGHASELGVTPTHLTRVCKQETGKTAAA
LLTERQLHAARSLLASTRLPMRDIAQSLGFGSAAYFTRFITQHTGSTPSDLRKKAHGAQLASGRNP
>gi|99081258|ref|YP_613412.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MTTTKLKSSTTHHWAAEMHAQELKAGKISRREFLTRATALGVSATAAYGMIGLSAPARAADNMKEGGTLR
VQMSVRGLKDPRTFDWSEIGNQARGTLEYLVEYNNDGSFTPMLLESWQVNDSADEYTLNVRKGVKWNNGD
DFTAEDVARNIEGWCDKDMEGNSMAGRFATLVDPDTGKAIEGAIEVVDSHTVKLKLPNSDISIIPGMADY
PAAITHASFSADDAQNAVGTGPYLISELEVGVKCVLTRNENHSWWGEAIYGKPALDSIEYIDFGTDPSSW
LAALESEEVDMLYESVGEFIDLMDSLGFVKSEVVTMATIVVRPNQLAEVDGMSPYADKRVRKALQMAVDN
DVCLELGYGNRGVAAENHHVGPAHPEYAELPKEAADPDGARALMEEAGMMDFEHELFSIDDDWRKNTTDA
VAAQLRDAGFKVKRTVLPGSTFWNDWTKYPFSSTNWNHRPLGVQIWALAYRSGEAWNEFGWSNPEFDQIL
ADALAIADADARREVVAKGQKMIQDEGVTIQPYWKSLFRHMREGVRGADMHISYEHHHYKWGWAA
>gi|99081259|ref|YP_613413.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MGPFILRRTGVMIITALCLTFIVFVMTNLYPNLEKLAKTEGNFRMSDEAVASWLDKNGYGQPMLLKYGQW
LGVVPGWQRSGEEGVTGRCIDGTVTPEEAAQAARFCGILQGDWGYSTRFKTDVSEIIQTRLGNTGYLMMW
VLILMVPSALIVGVLAGMREGSATDRSLSTVSIMTTATPEYVSGVIFIAVFASSTVGLKWFKGTATAAME
NPTFENFFLPVLTIALYGMGYIARMTRASMTEVMTAQYIRTARLKGVSFPNIVLRHALRNALIAPFTVIM
LQFPWLLNGVVIVETLFNYKGFGWALVEAASNNDIELLLAISVVSVIVVLLTQLISDIGYIFLNPRIRIS
>gi|99081260|ref|YP_613414.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MDPLTWTGALGFLTPILVIALILLAASIVIWMLASAMSAGTRYVANADGSLSLAGNPQAMAALAVRATFG
AVAAIALAYLVLGLIMGTGAGIIGAISQQMWPTWVALLLLFSLSIKFKRRLGLYGKLFDSPIGMIGFGLV
MFWVFTGVFGAMDLIATHDPLAQVSGMKNKVPGTPLRSVEDGEYAWYLLGGDNLARDVFSRMVKGAWEVL
KYAPLATLFAFMVGITLGLPAGYYGGKLDTFLSFLANLILAFPVILLFYLLVTPEIVATGLPQYMAVVLF
AFPMVFCGVLIHSRFRTQPSKNAFWLALVLVPMVLMYMSLINAEGSKIAFWPLDFFDIPGGVLVVFVSVV
FVNSPTVFRIVRGLALDIKTRDYVAAAQTRGERPWYIMLWEILPNVRGPLIVDFCLRIGYTTILLGTLGF
FGLGLPPESPDWGSTINDGRKLLSIYLHPALPPAIALMSLVLGLNLLADGLREESLRD
>gi|99081261|ref|YP_613415.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Ruegeria sp. TM1040]
MSKLADYDGPILEIDKLSISFFTRLREIPAVMDFSVAVQPGEAVGLVGESGCGKSTVALGVMQDLGKNGR
IVGGSIKFKGRDLAEMSAEELRDVRGNEIAMIYQEPMASLNPAMKIGKQLMEVPMIHEGVSEKEAYDRAL
EVVTDVKLPDPKRMLNSYPHQLSGGQQQRIVIAMALMSKPALLILDEPTTALDVTVEAAVVELVKDLGKK
YGTSMLFISHNLGLVLETCDRICVMYSGEAVERGSIEDVFDHMRHPYTQALFRSIPLPGADKNARPLVAI
PGNFPLPHERPRGCNFGPRCDYFEAGRCDASDIAMAAVPGNERHHTRCLRFEEIDWNAPLALAEQTSKTE
PGRVVLKMDKLKKYYEVAANALFGGGARKVVKANETLSFEARESETLAIVGESGCGKSTFAKVLMGLETA
TEGEILLDDRNIEDVPIEARDAKTISDVQMVFQNPFDTLNPSMTVGRQIIRALEIFGIGDSDGARKQRML
ELLDLVKLPRAFADRMPRQLSGGQKQRVGIARAFAGGARIVVADEPVSALDVSVQAAVTDLLMEIQRNEK
TTLLFISHDLSIVRYLSDRVMVMYLGHVVELGETEQVFSPPYHPYTEALLSAVPIADTSVEKTHIVLEGD
IPSAMNPPSGCPFQTRCRWKSKVPGGLCEAEVPPIQTLENGHQIKCHLSGEVLESMEPVIKIAAE
>gi|99081262|ref|YP_613416.1| tetratricopeptide TPR_2 [Ruegeria sp. TM1040]
MLVENSHTPDALAEAFATVDGLMATGKFARSLSVMLPFVQTGELDAGLLDRTADCFFEMRDYENAVNVMR
HVTATWPDDPSAWGKLGLMLQTKGDLLGAEQAFEEVLKRDPNSIPALTALNGIETFSVDSLYAQRLMSLS
EREDLDAKHRALIHYALAQIAHGSGEAEVAFTLFQSARNEVAGPFAPAIFDEMVAEQEALFEPRPASEDA
SLLPKLVFIGGMPMSGTGLVDRILAQHPGVFSVGAKTALSRTHGAIRMHLAKTDRPCNYWDWMEHLSAEE
IDIFRQYYLERALGGQVAGGKTIVDAHPLGCLEFGLAQFLFPEAKFVFMSRHPMDTALANIASNVLNGNA
LASRTEWIAQVMRTVYSSATVYASKLGDSMRLQSYEALVQNSEREIGLLLEHAGLEYNAACLTPNALCDV
PQIATMLGQEELSTETQNQWLPYEEQLQGFYEQLGGERWVSAWEDFDKTLR
>gi|99081263|ref|YP_613417.1| di-haem cytochrome c peroxidase [Ruegeria sp. TM1040]
MFKLLRHASCLILCAAPLVAAPYQTAEDLGEALFFETDLSLNRSQSCATCHDPAAGFVDPRGDAEGAFSR
GDDGVSLGGRHAPTAAYASLSPAFHQNDAGEWVGGQFWDGRAADLAEQAGGPILNPIELGLSSQAEAIAR
LAAHPEYVESFQTLYSVDITTDTEAGFKALTQALAAFESSDVFQPFDSKYDRFLRGDVELSSEEELGRLL
FFSEQFTNCNQCHQLRRSAIDPAEPFSDFRYHNIGVPANVAGRLENGVAEDWVDAGLYENPSVLDRAERG
KFKTPTLRNVAVTGPYMHNGVFQDLRTVVLFYNRYNSKAASAQINPETGAPWGEIPVPDTLAQKELTHGP
ALDDRRVDALVAFLKTLTDSRYEPLLQE
>gi|99081264|ref|YP_613418.1| hypothetical protein TM1040_1423 [Ruegeria sp. TM1040]
MSGKTFEGQLTRIGWEPGARPRPELVDDILDYHGRGGRRDIGPTLLGVAFGALLGLLLKGMALDGSPWGA
GTGLFGDVIGAIALCGFLGAVLVAFLAALRAKSQPELLQFASINLLTLLIVYMV
>gi|99081265|ref|YP_613419.1| lytic transglycosylase, catalytic [Ruegeria sp. TM1040]
MRRISTAALIVTCLATPVVASDLFSNSSKRKVFAAQTKFLDTRGATQYRGSERLKPDSLQDDVLPVYRGS
YRGEYLEVARSAARANGVPEDLFLRLVQQESNWNPTAESHKGALGLAQLMPQTARTLGVDPLVPAENLRG
GAKYLAQQYRKFGSWRLALAAYNAGPEAVTRHGGVPPYKETQNYVRKILGS
>gi|99081266|ref|YP_613420.1| single-strand binding protein [Ruegeria sp. TM1040]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFNEGLVRVAEQ
YLRKGSKVYVEGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGFGGGQGGGDYGGGGGG
YGGGGSYGGGGGNQGGGFGGGGPSQNIDDDEIPF
>gi|99081267|ref|YP_613421.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MKTTTRVAIIGGGVVGCSVLYHLTKLGWSDVMLIERSELTSGSTWHAAGGFHTLNGDTNMAALQGYTIKL
YKELEAITGMSCGLHHVGGVTLAETQERFDMLKAERAKHRFMGLETEIVSPEEIKKIAPVTNIDGIIGGL
YDPLDGHLDPSGTTHAYAKAARLGGATIETHCKVIETNQRPDGSWDVVTEKGTIHAEHIVNAGGLWAREV
GAMAGIYFPLHPMEHQYIVTDEVPLIKEIVEAGGEHPHVMDPAGESYLRQEGRGLCIGFYEQPCRPWAVD
GTPWNFGHELLPDDFDKIEDSIDFAYKRFPALAEAGVKSVIHGPFTFAPDGNPLVGPVPGVRNYWSACAV
MAGFSQGGGVGLMLAQWMVDGECERDTAAMDVARYGDWITPGYTRPKVVENYQKRFSISYPNEELPAARP
FRTTPMYDIFDEMGAVWGHQYGMEVPNYFAAEGEARFETPSFRRSNAFEATAREVKAVREGIGINEIHNF
GKYRITGSGARAWLDRIMAGRVPQQGRLSLTPMLSPKGRLIGDFTISCLSEGEFQLTASYGAQAYHMRWF
LQNLDANVSIENVSDQVNGFQIAGPKAAAVLQACTRTDISDMRFLDVRRLTVGMVDCVVQRVSYTGDLGY
EIYCDLPSQRALWTTLWCEGQGHGMKPFGMRAMMSLRLDKFFGSWLSEFSPDYTAAETGLDRFISFKKPV
EFIGRSAAEAERETGAERKLCAFEVDAEDADVVAYEPIWLDGDVVGFCTSGGYSHFAQKSIALGFVPVER
ATEGLEVEIEILGKKQRARLITEPLFDADGARMRG
>gi|99081268|ref|YP_613422.1| hypothetical protein TM1040_1427 [Ruegeria sp. TM1040]
MDSATAALDTSFWITAGGIVLLLVLSGFFSGSETALTAASRGKLRSQADKGSRGAARALEVTEDNEKLIG
SVLLGNNLVNILAASLATALFTKLFGESGVALATLVMTLLVLIFAEVLPKTYAITNSEKAAAAVAPIIGS
LVKILAPIVGAVRFLVRGVLRVFGVKIDPDSHIMAVREEIVGALQIGHSEGVVEKEDRDRILGALDLSDR
FVEEIMLHRSKIEMIDAEADPEAILEQCLTSSHTRLPLYRKDQENIIGVVHAKDLLRQMYAKIGGADGDA
SALRDFQITEVCKPPYFVPETTTLDDQMRQFLRMRTHFALVVDEYGSLQGLITLEDILEEIVGEITDEFD
PAEQSFARKTSDGNFIVEGATTIRDLNRAMDWNLPDLEANTVAGLVIHEAQMIPTVGQVFSFHGFRFEVT
AREGNRVTRLKIRPLHG
>gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040]
MLAPADDLQWISTFLDAQAAELGAARNTLLAYGRDLRNVTTWMRTKGQSFAQMQQADIEAYLISCDAEGL
SRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGRDKSLPKTLDEAEVDRLLAAAREVGRTEADRLR
NTCLMELLYATGMRVSELVSLPVSATRGDPNMLLILGKGGKERMVPLSPPARAALGAWIVLRDSLEDKRE
GQGHKASRFLFPSRSKEGHLTRHRFYLLIKELAVAGGVSPEKVTPHTLRHAFATHLLQNGADLRAIQALL
GHADIATTEIYTHVLDARLAELVHQHHPLAAKDDETR
>gi|99081270|ref|YP_613424.1| hypothetical protein TM1040_1429 [Ruegeria sp. TM1040]
MPTKTASLAIGVFLLASAPGDAREPLAAIDWLNSAPPVANIPTTLLQEPPVAKSAYGPDITVTPLERLLP
PVGLVPQSRTGLPITLWQGSPPDQLAGLIRDVPVQDLPSMQSLLMTLLLTEARPPFRDNDEILLARLDRL
RDLGATEPVQALVQEAGPTESAARFERWFDATLLNGDEDRSCAALTADPYLMQDYPARIFCAARRGDWPT
AALMLETADALGLLESDDMALLDRFLNPDIYEGMPPLPLPQNPTPLEFRMFEAIGEPMPTRSLPRAFASA
DLRDVAGWKAQLEAAERLTRSRAMNPNQLLGLFTQRKPAASGGIWDRVDAVQRFDAALGTGSAEAVRKTL
PAFWAAAQAAGLEMAMADLFAPRLAGIVLDGPAAQIAWHMRLLSAEYEIAAQSPPDQSRATRFLVSLAQG
TPAMDLASTPQEKAIARGFAADSEMPAAQKLLLDRARLGEAILVTMKSFSHGADGNIEAITLSLAAFRRM
GLEDSARRAALQLLLLPRGS
>gi|99081271|ref|YP_613425.1| hypothetical protein TM1040_1430 [Ruegeria sp. TM1040]
MARLIKYLAILIVLAAIALIAYAYVGPWFGADFSAPSEEVRKPVVLNAD
>gi|99081272|ref|YP_613426.1| shikimate kinase [Ruegeria sp. TM1040]
MSENHQISDATAETRAPGRLKKTIVLVGMMGAGKTAVGRALAARLDVPFLDSDHEIESAANMSIPEIFAR
DGEPFFREKEHQVIARLLKEECGVLSTGGGAFLAERNRTMISEIGVSVCLQADLDVLWKRVKGRDTRPLL
RSADPYQTLSDLYHARVPTYAMADLKVISDGQVSIDNMVDRVLEALRTRPDVLEFD
>gi|99081273|ref|YP_613427.1| 3-dehydroquinate synthase [Ruegeria sp. TM1040]
MEQTVHVPLGARAYDVVIGPDLVAQAGQRIAPLLRRKTVAVLTDETVAALHLEALRAGLAADGIEMEALA
LPPGEATKGWPQFTRAVEWLLDKKVERGDIVIAFGGGVIGDLAGFAAAVLRRGVRFVQIPTSLLAQVDSS
VGGKTGINAPQGKNLIGAFHQPSLVLADTAVLGTLTERDFLAGYGEVVKYGLLGDAAFFDWLEENAPAMA
AGDMALRVEAVARSVQMKADIVARDETEQGDRALLNLGHTFCHALEAATGYSDRLLHGEGVAIGCALAFE
LSARLGLCSQEDPSRVRAHLKAMGMKTDLSDIPGDLPPAQELLDLMAQDKKVVDGQLRFILARGIGAAFV
TADVPSEKVLEVLQEALAHTQPA
>gi|99081274|ref|YP_613428.1| hypothetical protein TM1040_1433 [Ruegeria sp. TM1040]
MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVPHLEHPRASAA
GEAHLVAVPNAVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLKMAEQFAGPEGAILRASGTDQ
SGARRAGHPVLFPRRCFDALQTLTGDAGARELLKQEAVQLIALPGAHALTDLDTPEDWTKWRARQGDV
>gi|99081275|ref|YP_613429.1| type I secretion target repeat-containing protein [Ruegeria sp. TM1040]
MNKTCERTSGDCTGESKARAASDRVTPCFTPGTLIATPRGERLVENLQVGDRVITRDNGIQEIRWFGHNA
MGPQDLSHASHLQPILIRQGALGNGLPERDMMVSPNHRVLVANDKTALYFEDREVLVAAKHLTGLTGIDA
IVTTAVTYIHFMFNQHEVVLSDGAWTESFQPVDQSLRGLDNAQRNEIFELFPELRTKEGQKAYPSARREL
KEREARMLLH
>gi|99081276|ref|YP_613430.1| hypothetical protein TM1040_1435 [Ruegeria sp. TM1040]
MPRSVNKGVKLFELARVFATIQGLSPEGFSASEGALLACCWFRPRKQRSLRWRHFGWPIGWAVQFASNYH
IIFKISAHRAQGP
>gi|99081277|ref|YP_613431.1| enoyl-CoA hydratase/isomerase [Ruegeria sp. TM1040]
MAKDDIANNNIAEPLITRHDDAGVARLTLNQPRRINALSEAMLHALQAALDEIAEDRSVRAVILSGAGDH
FCAGHNLKEMTEARAGDDGGFEYFQQLFATCSRMMQTIVELPQPVIAEVSGIATAAGCQLVATCDLAVAS
EDARFATSGVTIGLFCSTPMVALTRNLLRKHAMEMLLLGEFIPASRAAEIGLVNRVVPLSDLAQETTELA
RRIAGKSPAAIKIGKSAFYEQAQMSLAEAYACTGRAMAENMMARDAEAGIGAFLSKAPMPDWTGE
>gi|99081278|ref|YP_613432.1| inositol monophosphatase [Ruegeria sp. TM1040]
MRLDHDIENALISMVRDAARIEIMPRFRNLSAGAISAKTSSIDVVTVADVAAEEHMSRAVENILPGAVVI
GEEAVSADPRVLDQVGQAEVAVIVDPIDGTWNYAHGLSTFGVILAVTLRGQTVFGLLYDPVSDDWVQTSL
GGGTWMAAPGLEARRLRVAPERRFSEATGFVPHFVFAKEEQLAVAQGMVRAKRTTSLFCSCHEYRMMAQG
HVDFVQTEGLNCWDHAAGVLAALEAGGHAQLSDGRAYDPALTTGRLTVSSGETLTQEAISEFGLG
>gi|99081279|ref|YP_613433.1| MscS mechanosensitive ion channel [Ruegeria sp. TM1040]
MTYLRTLFQVGLLGLTCLLLPIVALAQETGGQTRLHEARDLVQTAASGKLGEYYEAWQRTADRAERVLDA
GRASNGALEALRLELTEYRQQFLDAGSQNADRLRTLRAQIEALGPPPEENGSEPENIAKLRQELQSQLAN
LSAPQVLADLGYSRAQGLITEIDKLIRERATRTLLERAPMPVNPEHWPTAFSDTAKVLGAFWYETATLLS
SAATLETIRGRLPVLLLFTAGALLLLGRGRYWARRAGTHLRELGWRGTGVWRFIVSLLQVLLPYVGTVLL
VRAIDMSGVLGVRGTLLLDDVPLWSFILFASHWLGERLYVYQITNELIPFEPRFQRQVRVILVSLALVLV
MQMMLDRLDTIENFTDATYAVLSWPLVILASLFLVRLNRIRVRQRRLEIEENGGSEDEGAIAAGANRAMS
LLRRAVFIMALVAPILGALGYINAAIAIVYPVILTLGLVTTLMILQRFLSDIYGYVTRNGQGAEDSLFAV
ITGFVLALLSLPFFALIWGARTSDLTELWSRFLEGYSIGDTKISPTIFLTFVVIFVCGYVLTRLLQGSLR
SSLLPKTKIDPGGQNAIVSGVGYIGIFLSALIAVSTAGLDLSSLAIVAGALSVGIGFGLQTIVSNFVSGI
ILLIERPVSKGDWIEVGGLMGYVRDISVRSTRIETFDRTDVIVPNSDLISGTVTNYTRGNTVGRVIVPVG
VAYGTDPRKVEEILMEVAQSHPMVLMNPAPSVVFQGFGADSLDFEIRAILRDVNWVLSVKSDMNYEIAKR
FTEEGIEIPFAQRDIWIRNPEAIQTSKESPQAETSTSAGASTHAARLKPDLDDLAQDQDADAEGDGDGDR
>gi|99081280|ref|YP_613434.1| cysteine synthase A [Ruegeria sp. TM1040]
MVLRASQTQWNHGRAEIVPDRRNASLRALWTLVIAPVPSYIRGERAKGNFMRIARDLADAVGHTPLIRLN
KVSEETGCEILGKAEFLNPGQSVKDRAALYIIKDAIARGELKPGGTIVEGTAGNTGIGLALVGASMGFKT
VIVIPETQSEEKKDMLRLAGAQLVQVPAAPYKNPNNYVRYSERLANELAKTEPNGAIWANQFDNVANRQA
HVETTGPEIWEQTGGKVDGFICAVGSGGTLAGIAEALQPKGVKIGLADPNGAALYSYYTTGELKSEGSSI
TEGIGQGRITKNLEGLTPDFNYQIPDAEALPYVFDLLHEEGLVLGGSSGVNIAGAVRLAKELGPGHTIVT
ILCDYGTRYQSKLFNPEFLKDKGLPVPDWMTHTPASIPGVFEDI
>gi|99081281|ref|YP_613435.1| tellurite resistance protein [Ruegeria sp. TM1040]
MGTQVVFGAVSAVGLRWISARPAHSLADSLAIAGNQIPMPTAARLVAAVALALLAFVVSGQIMPLMPDDT
DFGYFTFVNMGLGLVIGWKSIGPRAGRGWAAGITNGITGTAVLVLWGLFIQGAVEMFRLAKRSIYDGPFE
ALAAIFTIALEYFFIMAVPSVLLTLAVGGTLIGMAVEIASKRWK
>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
MADTRPVIWWIRRDLRLRDNPALRAAQEAGGPIIPLYIHDAQEEALGAAPKFRLGLGLERFAKTLEEKGS
RLIVRRGDALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALKASDIKAKSTGGRLLFEPWTVDTK
DGGMYRVYTPFWKAVRTRDVAELTAAPSRLAAPESWPSGEALADLGMDAAMRRGGAIVAQHCRVGEDAAL
AQLDDFLTERVSNYKAHRDFPARAATSELSENLAWGEISPHRMWHLGAQAMQDGQPGAEHFLKEVVWREF
AYHLMHRSPRILTRNWREEWDGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASF
LTKHLMIHWKYGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKGDYARRWLP
EGQANPPETAMAYFEAIPRRWSLHPDQSRVSPIIGLKEGRERALSAYKESRNQS
>gi|99081283|ref|YP_613437.1| aminotransferase, class V [Ruegeria sp. TM1040]
MKRAMDIEFVRKQFPAFEQPSLQGQAFFENAGGSYTCRQVIDRLFRFYTEHKVQPYAPYAASEAAGAEMD
EARSRLAAMLGVSAQDLSFGPSTTQNTYVLAQAFRGFLKPGEKIIVTNQDHEANSGPWRRLADEGIEVLE
WQIDPATGHLEPSALEDLLDESVRLVCFPHCSNVVGEINPVTEITALAHAAGAFVCVDGVSYAPHGLPNV
GELGPDIYLFSAYKTYGPHQGIMVINPALAELLPNQAHYFNGDVPYKRFTPAGPDHAQVAACAGMVDYFE
ALAEHHNAPEITGTGAGAFVHDLMREQEISLLQPLLDAVKGRNDVRLLGPANAKERAPTVALALGRAAEP
VAKQLAELGIMAGGSDFYAVRALRAMGVDPAQGVLRLSFTHYTDQLEVTALIEALDRVL
>gi|99081284|ref|YP_613438.1| zinc-binding alcohol dehydrogenase [Ruegeria sp. TM1040]
MFKALVMTQDSESGKAAAEIQDLTLEDLPEGEVTVAVYYSTVNYKDGLCLSPKGGGLVRNYPHVPGIDFA
GTVESSSDERYAPGDKVVLTGWRVGEAHWGGYAQKARVKADWLVPLPEGITPRQAMAVGTAGFTAMLAVM
ALEDHGLKPGTGPVLVTGAAGGVGSVATAILANLGYEVAAVTGRPETADYLQSLGATQIVPREDLNETVK
RPLESETWAGCVDAVGGDMLARVLGQMKYGASVAAVGLAGGAALPATVIPFLLRGVNLLGIDSVMQPFEN
RQRAWQRIASDLPLEKLDAMIQPASLTDLPKLGADILAGQVKGRVVVDVNA
>gi|99081285|ref|YP_613439.1| putative dimethyl sulfoniopropionate demethylase [Ruegeria sp. TM1040]
MRRSPSTHGMKGFAMTVLKPAISLSRRLRRTPFSEGVEAAGVKGYTVYNHMLLPTVFESVEADYHHLKRH
VQVWDVACERQVELRGPDAGRLMQMLTPRDLRGMMPGQCYYVPIVDETGGMLNDPVAVKLAEDRWWISIA
DSDLLYWVKGIANGWRLDVLVDEPDVSPLAVQGPKAEDLMARVFGETVRAIRFFRFGVYQFEGRDLVVAR
SGYSKQGGFEIYVEGGDLGMPLWNRLFEAGADLEVRAGCPNLIERIESGLLSYGNDMTDDNTPHECGLGR
FCNTHTAIGCIGRDALLRVAKEGPVQQIRPIEISGEAVPPCDQFWPLVANGRRVGRVSSATWSPDHATNV
AIGMVKMTHWDAGTQLEVETPDGMRTALVRENFWN
>gi|99081286|ref|YP_613440.1| hypothetical protein TM1040_1445 [Ruegeria sp. TM1040]
MTNDSIKSETEVAPRDQSAVGTIPWAIKGELILNCNCTVFCPCVVSLGKHPPTEGYCQAWAGVRIDEGHY
GDADLSGLNVGLVLEIPGLMARGNWKAAAYIDERASDAAYEGLIDVFSGKARGTTGLFKVLVSEFLGAER
APVLFETEGKTRRLIVGKQIHGEVVPVGGADSDQDIVVTNTEYWMGPDITVATATKGRVRAFGRVWDFDG
RSAEICQIDWKGPR
>gi|99081287|ref|YP_613441.1| hypothetical protein TM1040_1446 [Ruegeria sp. TM1040]
MLKARLTQSIRQMSGLHWLLLFAGILLAWAGLFAMSVPADLRAAGQVYGADFWLALCTMTADAAGAGKMV
LMWGLMSAAMMAPTALPAFATYDDLSQTGENTRFGDLVFGYLTVWIGFSVLAAALQLGLVRADLITVFGD
SRSGLLSGALLLIAGAYQFTPLKDSCLSKCRRPLVFFMQHWDEGPWRNGLRLGAVCLGCCWALMLLAFVG
GVMNLAFMALATVFMVLEKLPEIGRWLTRPMGVILCASGLWVLMTSI
>gi|99081288|ref|YP_613442.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MKIDPKSSADLSAQIATAIRDAIISGALIVDERLPSEAELAEQFQVSRATVREGLKRLAAQSLIRTQRGA
SGGAFVNRLSFEDAYSQQITTSTLLLSMNAVSFDTACEARYALERACAPLSAERRTADQLATMRAEIFRQ
GQPGLTDEAFCASDVAFHRALVDGAHNPVLSYQLAGAVEAMQPLMNMITFTARDRATILALHTTVADAIE
AGKGDAAVAGLSALEEETRNLAADVFARRATKR
>gi|99081289|ref|YP_613443.1| hypothetical protein TM1040_1448 [Ruegeria sp. TM1040]
MKNSALLKYWFEEVWNKDNLSVIDELLDPDVTFNGALDGVAAPGVDYKEVVGALKARLDQPYVTITHSMD
DGDLAMVRVQVRAHDLTRTRELDFTGQMCVRVRDGRFVEFYSNFDYLRMFEQLGQLPSDALPVCLTGEKL
TWVE
>gi|99081290|ref|YP_613444.1| chromate transporter [Ruegeria sp. TM1040]
MTTPLASQTPPPSWWALFHCFGMIGLLSFGGPAAQIALMHRELVDRRDWLEEEAFLRGLSFCMLLPGPEA
MQLATYTGWRMRGVGGGLLAGSLFIIPGALVIAALVFLYVSFGTLPAVKSAFLGIKAAVVVIVIQALWRI
SQKALKTAGAWALALGGFVALFVFDLPFPLVVLLAGGIGLLQRAPSTDPLPSAHHVPAHHGRTILFWTAL
WLLPLLGLSLIGAEFLATIGWFFAKLAVVTFGGAYAVLAYMTQTVVSDHGWITTGQMIDALGLAETTPGP
LVLVTQFVAMLAGSEMGGTKLAIAAGAVALWATFVPCFLWIFATAPYVERLTAHPRLRSALAAITASVAG
MMLNLSVWFLLHLLFQTNTHRDLGPISVPLPEFGSLDQTALILTALAPVVAALLRGRILWLLATMACFGL
VVAGFTVG
>gi|99081291|ref|YP_613445.1| hypothetical protein TM1040_1450 [Ruegeria sp. TM1040]
MSRQIDYGNLMHRAMRGLIRNVLDDVAEHGLPGAHHFFITFDTSHPDAELADWLSDRYPGEMTVVMQHWF
DNLNVTDEGFSVTLNFGDAPEPLYIPYDAIKTFVDPSVEFGLRFESANEDDDEDMPPIEVASDMQDVEED
DAPAAKKDADVVSLDSFRK
>gi|99081292|ref|YP_613446.1| hypothetical protein TM1040_1451 [Ruegeria sp. TM1040]
MRSIALSPPRSLPETSRLALWAFMALSVLMLSVQSALGSELLDKFVGSYSGSAEVEQIDGTVEKRDMSVV
IRETSKGFEVKWSTAIRRADGDSKTKSYKIEFLPSERDGVFAAAMQTNVFGHTVQMNPMKGEPYVWARVI
GDTLTIFSLYVAENGDYLMQQYDRSLAEGGLNLEFSLHRNGKPSRKVSTFLTRD
>gi|99081293|ref|YP_613447.1| fumarate hydratase [Ruegeria sp. TM1040]
MSNTRTETDSFGPLEVPSDKYWGAQTQRSIMNFPIGWEKQPVAIVRALGVIKKACAMANKASGKLDAKIA
DAVIQAAGEVVEGKFDDNFPLVVWQTGSGTQSNMNSNEVIANRAIEILGGVIGSKDPVHPNDHCNMGQSS
NDTFPTAMHIATAMSVRDVLVPGLTKLAEGLEAKAEEFKDIIKIGRTHTQDATPLTLGQEFGGYAHQIRQ
GLARVEAAMPGIYELAQGGTAVGTGLNTVEGWGEEVAANMAEITGLPFVTAPNKFEALAAHDAMVFLSGA
LATIAGSCYKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQAEALTQVAAHVMGNDAAIKFA
GSQGHFELNVYNPMMSYNLLQSIQLLGDAADSFTERMLSGIQANEPRIDKLMKESLMLVTALAPTIGYDN
ATTVAKTAHKNGTTLKEEAIKLGFVDEETFDKVVRPEQMIGPKAK
>gi|99081294|ref|YP_613448.1| hypothetical protein TM1040_1453 [Ruegeria sp. TM1040]
MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVSLTDDDSTLDG
DFTRNERGIDSNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDDGSEITVYALESGGTLIGYLP
TAPLLRDVNYSYRTHNVINDDELTGSYQYWYRQYLGEDATDAGSYDDIQGAVIVCFTPNAQVTTPEGPRR
IRDLAVGDRVLTRDNGYQTLRWKYHRRLSRADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIES
HMSGLLFASNAILAPAKGLVNGTSVRQDQSGMPVTYVHLMFDRHEVIEADGLYSESYHPGAWALAAAEDA
VRRELFEIFPALEADLNAYGPTCYPSINAQEARLLKA
>gi|99081295|ref|YP_613449.1| uncharacterized arylsulfate sulfotransferase-like protein [Ruegeria sp. TM1040]
MIGERPKKRSLTLRGHRTSVSLEDAFWSEFRRLAAREGRAINELAAEIDEQRGTDCGLASAIRLYVLSAL
KAETVT
>gi|99081296|ref|YP_613450.1| cytochrome P450 [Ruegeria sp. TM1040]
MTLRPPKPPVRPDRVSLWRYLKLFRADILSAQPQRLYRAWMAEFRTPFFRSFLVNQPALLDVILKERPDD
FPKSNRVGEGLRPLLGNSVFLTNGETWKRQRRIIDPAFEGGRLKESFPAMRAAAEAGVARLRPHADGSEL
EIEAEASHIAADVIFRTLFSIPIEHEVAAEVFSRFRAYQQAQPILNLAAFVPVPRWMPRFYPKGTRQNAR
HIRRLIADLTKARMAEIAAGTAPDDLATKIMTTLDPETGKGFGAEEMVDQVAIFFLAGHETSASALGWAL
YLLALYPEWQEKLAAEVAEHGAEEFADLSKLRLTRDVFRETLRLYPPVPMMVREAVQTERFRDREVLRGS
QMVLSPWHLHRHERLWERPDEFDPGRWQSENGKACARNAYMPFSAGSRVCTGAGFAMVEGVLILAQILRH
YRITPVEGRSPEPVAHLTVRSRTGIWLRFSHR
>gi|99081297|ref|YP_613451.1| hypothetical protein TM1040_1456 [Ruegeria sp. TM1040]
MSSTSSAGPVQRRRVFYIPGYDPFHPRRYRELYRSEGAEQAEISGYDLTLRPKSSPGPFGWHVSASIEGA
DVETDIEVLVWSDIVKHSMRSTVAATYWQLLRTVWIYVATGTLWRLMRLRKGPVIAALYPVAILLVQAFL
ALLAGYAFARLTGVIGAWFSLPDLVAIFLQGSVGAGAAVMLLRLFKAHDNKLFVYYLMHDYAYSAGLCGA
IPAELEARMKAFTATVRDALTENTVDEVLVVGHSSGAHIGVSVLADLLQEDLPEQRPVLSLLTLGQVVPM
VSFLPRATRLRRDLREISEQQSIAWYDVTAPGDGCAFALCDPVAVSGVAPPEQRWPIVFSAAFTKTLSPA
RWQALKRRYFRLHFQYLCAFDQPKHYDYFRITAGPLTLGARLKARGHSRSRLAKPLSRYRDMDKR
>gi|99081298|ref|YP_613452.1| cytochrome c biogenesis protein, transmembrane region [Ruegeria sp. TM1040]
MFGIEIIDASLLPAMFVALVGGIISFLSPCVLPIVPPYLAYMSGVTIGEIQGTAAARRKAILAAVFFVMG
LSTVFLLLGFTASAFGAFVLQNQELFAKASGVVVIIFGLHFLSVFRIPILDREARMETGETGGSALGAYV
LGLAFAFGWTPCIGPQLGAILSLAASEASVSRGTLLLGVYALGLGVPFLLAAIFLNRSMVLMNRIKRHMS
LIEKLMGGLLLVVGFMLVTGLFTSFSFWLLETFPALATLG
>gi|99081299|ref|YP_613453.1| SirA-like [Ruegeria sp. TM1040]
MTDIDATLDAIGLLCPLPVLKARKRLQPLREGGVLRILADDPAAIIDVPHFCAEAGHEFLGMEEQDSHQV
YLIRKGAA
>gi|99081300|ref|YP_613454.1| RNAse E [Ruegeria sp. TM1040]
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLA
FSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEDDEPKPKRRSRSRSKTRAEKAKTADAVETKEVAT
PEGEISGMETIDLSDDSTVLAEVPEATSPMETVAETPVEEPVGDDAAAEMPEADTTDGEAPAGDDSVVAE
PATDGEAETVAEDSAAIEEADADDDTDEGGTEDAPEAKTGGADAADKDDSIESVADDDDQEDIRPPRKPR
PKRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKD
IATELDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRMWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYN
REIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFARYQVESYLGGMFNPTVQLKSGGYIVIG
VTEALVAIDVNSGRATKEASIEETAVKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKKLK
DKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGTRR
RSREVLVKCPVDIANYLMNQKREHIAQIEARYGLSVRIEGDVTLVSPDFSLEKFKTASRAIPAVTTPVVS
VDASIMDQVDAIEEVAETPEEAPAPQAPEADETEGEAKPKRKRRRRRRKKSGNGENGQDADAQASEANAS
DASDAATDSQDAESDSKTETAPDAAGEGDGEAEPKKKRTRTRTRSRSRKKVETEVAAEAEAQDAAPEATP
SEASEAEEAAPAEPAAPAPVEDAAVDEAPVVAAETTASEEATAEEAPSEAPQNTADSQEAPKAETVVAET
TPAPVAAEEAASEEVAPEETPEPVQEETHAEVEPEEAKPEPALAVAEPEPEEPAKPKRRGWWSVGR
>gi|99081301|ref|YP_613455.1| HAD family hydrolase [Ruegeria sp. TM1040]
MPAGYLFDMDGLLLDTERLTLDAFLDCAPEFDLDPGEMRAFFMTLIGSARTQGEAMVRDFIGPDRDFDAL
DLAWQHHSQRRLAAGIPVKPTVAETISALHASGAVMAVVTSTFGDKARHHLDRAGLLRCFRTVIGGDEVP
ANKPDPAPYVQAAEQLGVPPQNCAAFEDSDTGITAAARAGCFAVQIPDLRPSARAFPDVGQRFATTLTEA
VTTAQAHFHHERRRQGRSL
>gi|99081302|ref|YP_613456.1| two component, sigma54 specific, Fis family transcriptional regulator [Ruegeria sp. TM1040]
MAQAMKIAIVDDEQDMRQSISQWLALSGYDTETFASAEDALKALGPDYPGIVISDIKMPGMDGMQFLKKL
MGSDSSLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSELAKRATGARRLTLDTRALRRELSDGG
QIMKKLIGTSPVMDRLREDILDLGQADGHVLIDGETGTGKTLVAHALHAVGSRAGKKFVLVSCAALEEEA
LAKRLFGPMQPEDSMLPAVEEARGGTLVLEDVEALSEALQAKLLSFINEQGIPGETRIIAISNLQEAGKT
SEDVLRADLFYRLAALRITVPPLRQRGEDILTLFTRLSEQFSEEYGCEAPQVTAQEAAQLLQAPWPGNVR
QLINVAERAVLQSRRGSGTIASLLMSDHEDMQPVMTTEGKPLKEYVEAFERMLIDNTMRRHKGSIASVME
ELCLPRRTLNEKMAKYGLQRSDYLG
>gi|99081303|ref|YP_613457.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MTASEETPGAKPPAPSERRAERPTLRSRTISWRVRLALVAFMAIAGATVWFTNSTLTHSFTETTRNRAEL
RLALYSGNLVSELRRHAIVPQLLSRDQALISALQSQDFSLSTQRLISFVDEIGAASITLMDRDGRTVAAT
DRVRLGEIYRNAPFFVEAIRSNATVFSVIPREVRGYQFTYSRRLVDSSGTLGVIMVEVDLQKFERAWAGI
SDAVMVADSTGTVVLATEARWRGLSEGEALKEQTPEGAIQRAIRATADWAALPTDVYLQGEAVMRLETRV
PFQGWRMMSYTTYDSIREQVNAVIALEIMGFAILLALAFYALSRKTALRMALFQRESAELRVLNARLQRE
IAERERVQKTLAVAEQSLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRNRPDEALSSFGR
IDDLIERMGAITRQLKSYARKGGDAFSPVNMGDALASSLSMMEPQLRQRHVQITRILPDEPVFVMADRMR
LEQVMVNLLRNALDATKSVEEPEVEIILAAGETATLTVRDNGDGIQDFDSLFEPFYTTKQPGDGVGLGLA
ISSGIVNDLGGRLTARNSDAGGAVFEMQLPILMDGIEAAE
>gi|99081304|ref|YP_613458.1| phosphoribosylformylglycinamidine synthase I [Ruegeria sp. TM1040]
MKAAVVVFPGSNCDRDLAVAFEQAGFDVSMVWHKDSELPEGVDIVGVPGGFSYGDYLRCGAIAAQSPICK
AVVAHAERGGYALGVCNGFQILTETGVLPGALLRNAGLKYICKTVDLAVATSDSAFTQGYNAGDVIGVPI
AHHDGNYYADDATVQMLKDQDRVAFTYVDNPNGSVADIAGILSENRRVLGMMPHPERAADEGHGGTDGVA
MFRALSGLLTDA
>gi|99081305|ref|YP_613459.1| phosphoribosylformylglycinamidine synthetase PurS [Ruegeria sp. TM1040]
MKARVHVMLKNGVLDPQGEAVRHALGALGFDKVEGVRQGKVIDLELAEGATEADVTEMCEKLLANTVIES
YSVEIQ
>gi|161899029|ref|YP_613460.2| phosphoribosylaminoimidazole-succinocarboxamide synthase [Ruegeria sp. TM1040]
MARRKKIYEGKAKTLYEGPEPGTIVQYFKDDATAFNAEKHDVIEGKGVLNNILSEFFMLGLGQIGVPTHF
LKRLNMREQLVRSCEIVPLEIIVRNYAAGSLCKRLGMDEGTQLPRPIVEYCYKDDALGDPLVTEEHIAAF
GWASQQDMDDILSLALRVNDFLSGVMLAVGIRLVDFKIEIGRIYDGDFQRLVVADEISPDSCRLWDIKTG
QKLDKDVFRRDLGSLTDAYTEVARRLGVMPNNPPAPGKPQLVN
>gi|99081307|ref|YP_613461.1| hypothetical protein TM1040_1466 [Ruegeria sp. TM1040]
MTTFDDREKAFENKFAHDAELKFRATARRNKLLGLWAADLLGHRDEAAEAYAQTVIIADLDEPGDDDVLA
KLATDLEGMVERAAIRDKMMELMMQVAEDLPQTDT
>gi|99081308|ref|YP_613462.1| hypothetical protein TM1040_1467 [Ruegeria sp. TM1040]
MPMRARRKQTFANSLRVVTPLLIMAGCLFALTRQADLPHFHDLLGLLTQVPAPHWIGALGATVLSFWALG
RYDAVAHRHLRSGIDDRTARRAGMAAIAFSQAVGFGLFSGSFARWRLLPQLNPLLSAQLTGFVGITFMTA
LAVICGIFLILVGPSWGMRLVGGGILFAAIAAVGLCFLHPEWRIRGLRLRFPSVQAILALALWTMMDVTF
AGVALWLLLPVGHGIGLDVLLTAYFLALGLAIISSSPGGAGPLELAMLTLLPGADPATLVAGLLAFRAVY
YALPAMLAGAVLLWPRLLRHGKAMPDPWETGDLGCDLRPAASQPFVRPQAETAVLLQNGGHVMAFGLNQV
ALLDSPQLSAVLFDPISGRQDEIPAALRAHALSRNAAACFYKCSARTALAARQEGWKILRVAQDAILAPE
TFTVEGSKHRQLRRKLRHAEKAGLQVEPAWGTLPLTQMAQVDAAWTRQHGGARGTTMGQFEPGYVAIQMT
CLAWLEDRLVGFMTFHRAADEWCLDLVRQLPGAPDGTAHAMICTAVEAARDAGVRRLSLASVPDHRFSAR
FDGGLRQFKSCFAPTWEARYMAAPSWAQMGLAIAEMTRLVHRPARPEAAMAQIDMLQDPIPDDTVENAVA
AKRTA
>gi|99081309|ref|YP_613463.1| methionine synthase I [Ruegeria sp. TM1040]
MSNSFQELLDSRDVLLADGATGTNLFNMGLQSGDAPELWNTDAPDKIKALYQGSVDAGSDLFLTNSFGGT
AARLKLHDAQGRVRELNRIAAELGREVADKAERKIAVAGSVGPTGEIMQPVGELSHALAVEMFHEQADAL
KEGGVDVLWLETISAPEEFAAAAEAFKLVDMPWCGTMSFDTAGRTMMGVTSADLAKLVEEFDTPPLAFGA
NCGTGASDILRTVLGFAAQGTERPIISKGNAGIPKYVDGHIHYDGTPDLMGEYAVLARDSGAKIIGGCCG
TMPDHLRKMREALDSRPRGERPTLEHIVELLGPFSSANDGTEEGSDASAERRGRRGRRRS
>gi|99081310|ref|YP_613464.1| radical SAM family protein [Ruegeria sp. TM1040]
MQNTDPFSPRCRKARGALSNAAGRFDLAREAQDDGWWQEAPDPSVATEIRNELARSLISYNRSPDLPFDR
SINPYRGCEQGCVYCFARPSHAYLGLSPGLDFETRLVARSNAAEVLRKELSARSYKVATLAIGTNTDPYQ
PCERDHLLMRQCLEVLQAFNHPVAIVTKGTLIERDIDILTDMARRGLVRVGISVTTLDANLSRRMEPRAP
VPARRLATIRRLSAAGVPVRIMTSPLVPGLTDHELEALLAAGQDAGADAASWIMLRLPREVSQLWQDWLQ
EHAPDRAAKVMARLREMHGGRDYDPRWGHRMRGEGEYAEMIARRFRLACKRLGLAERTAPLRTDLFAKPL
QPGDQLSLFS
>gi|99081311|ref|YP_613465.1| 5-methyltetrahydrofolate--homocysteine S-methyltransferase [Ruegeria sp. TM1040]
MSEEEDIILSELDDEELVQQMFDDLYDGLKEEIEEGVNILLERGWAPYKILTEALVGGMTIVGADFRDGI
LFVPEVLLAANAMKGGMTILKPLLAETGAPRMGSMVIGTVKGDIHDIGKNLVSMMMEGAGFEVVDIGINN
PVENYLEALEEHKPDILGMSALLTTTMPYMKVVIDTMVEQGKRDDYIVLVGGAPLNEEFGKAIGADAYCR
DAAVAVETAKEFVARKHNAMNA
>gi|99081312|ref|YP_613466.1| hypothetical protein TM1040_1471 [Ruegeria sp. TM1040]
MATASPRRGRAARLSKRAALSLPQGKSLDAQSLTEHGLAAPERERKTGRILLIACGALAREILAITRANQ
FDHIDLTCLPAKLHLYPDQIVTHVEAAVTKHRAVYDQIYVVYADCGTGGQLQQSCAELGVEMVPGPHCYA
FFEGTDRFNAYADAGEITAFYLTDFLVKQFDAFVWRPMGLDKNPELRDMIFGNYTTLIYQSQTEDPDLLE
KARACAARMGLDFQHRHTGYGELETTLMDWATPNPSSD
>gi|99081313|ref|YP_613467.1| cysteine desulfuration protein SufE [Ruegeria sp. TM1040]
MRFDMASAAFEEIVEDFEFFEDWEDRYRHVIEQGKAMAPLDDALKVPATKVDGCASQVWLHPQIENGVFH
FDGDSDAMIVKGLIAVLQKLYNGLTLSEVLAVDARAEMGRLGLNDHLSAQRSNGLRAMIERIRETAAAQA
>gi|99081314|ref|YP_613468.1| putative lipoprotein [Ruegeria sp. TM1040]
MRITLSALLISTLVLSSCGGWRDSRINPTNWFGQSREAEAPAAENLNPLIPQEEEKANLLGSRNDKEEDR
SLPIALIKDMRIERTSVGGILTVEGEAARNGAFNAELVPSDPQEPGQLEYTFRVTYPKAATYQGTVATRT
IRAAVSLSEQDLTGIRVLRVVGKENAREIRR
>gi|99081315|ref|YP_613469.1| ribonuclease D [Ruegeria sp. TM1040]
MKTLTTTDELRAFCQEAAKYPYVTVDTEFLRERTYYSKLCLIQIAYRGDGETDAVLVDPLSGDLSLEPLY
ELFRNEDVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVCGFGEQVGYETLVRKICKQGLDKTSRFT
DWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDKTKRSHWVAEELQVLTDPATYNIQPREAWRRVKTRT
NSGRFLAVVRELAAFREEYAQTNNVPRNRVYKDDALVELASTKPRTASDLGGSRLLLREARKGAIAEGIL
KAVERGVNCPQDDMPQADRSREKMQINGALADLLRVLLKAKTETSGVAAKLIAPSADLDAIAAGERDVPA
LKGWRHEVFGADALRLCNGEIALAAKGQQVKVVDL
>gi|99081316|ref|YP_613470.1| phosphoribosylglycinamide formyltransferase [Ruegeria sp. TM1040]
MVSLVDSMLNDADHPGSPCLVLSNNADAGGLSKAAERGVATAVVDHRPFGKDRAAFEAELVQPILEAGAD
VVCLAGFMRVLTAGFVRQFEGRMLNIHPSLLPKYKGLHTHARALEAGDLRHGCSVHEVTPLLDDGPILGQ
AEVPVHPGDTPDDLAARVLVQEHRLYPAVLERYLRGERAVLHLS
>gi|99081317|ref|YP_613471.1| phosphoribosylaminoimidazole synthetase [Ruegeria sp. TM1040]
MTSGKNGLTYADAGVDIDAGNELVDRIKPAAKRTNRPGVMSGLGGFGALFDLKAAGYEDPILVGATDGVG
TKLRIAIDTGLVDGVGIDLVAMCVNDLVCQGAEPLFFLDYFATGKLETDVAARIIEGIAEGCVRSGCALI
GGETAEMPGMYPKGDFDLAGFAVGAMERGTALPAGVSEGDVLLGLASDGVHSNGYSLVRQIVKYSGLGWD
GDNPFGEGKLGEALLTPTRLYVKQSLAAVRAGGVNALAHITGGGLTENLPRVLPDDLGADIDLGAWELPG
VFKWMAQTGGIEESEMLKTFNCGIGMILVVKADRADALTEVLEGEGETVARLGTVTRGEGIRYTGALL
>gi|99081318|ref|YP_613472.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MTLSRRTLLKSVGLAGAGLAVPSLGQMALAAPMAPAPVLHQFRLGDAVITALLDGHLSLPSGMFTGADPE
TVAQTLAGTFYREDAQGLEIPVNGYLVERAGQYTLIDTGTAALMGPELGGLMGALAATGVTPDQISTILL
THMHPDHAGGLLNADGSAAFPNAELVVADAEWGFWHDDAIMASVDEGSRGFFQMARNAVAPYADRMKPFS
GEAEVAAGFSAMPLPGHTPGHSGFMLDAGSEQLLFWGDVVHSTALQFRNPDWTIPFDADQSLAAQTRKAM
FDRAVADQLLVTGMHLDFPGLGRVERDGGAYAFDQAPWQFGL
>gi|99081319|ref|YP_613473.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MDRLSLLETLIVALDEGSLNRAAARKSMTQSAVSQHIKQLETLMGHQLLHRTAQGVRATRSGELVYTHAQ
RLLGNFDRMTAELDQLQDSLSGDFRISVNSFLGRHLIGHMLVELDQSHDDLNIILRVEDRLVDVVRENYD
LAIRTGRLGETDGVGRRIATMETVLLATPAYLDQMGRPESPEDLKRLKYIQHHEDQTNGFFPLSRGGEQV
LAPIRVGFTADDPDLIRHAVTNGTGYTRMPLFFVKEMLDAGEYERVLPDWDAPDKDVFAVYPSRHGVDRR
RELVIEGVVATFEAFRNRQPKPHLRAVGA
>gi|99081320|ref|YP_613474.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MKLSDLKHYVPRLPSGIYGRAALILLMPVVALQLVVAFVFIRRDLEDITQQMAYTVARELNVISDQIATA
ESPEAALSDLQPMLQRLNFQMRFISAEEPTPQNSIPFEDLSGRFVRDSMVGYLPQFQSIRFTRSHASYIM
IDTKFGLAEVKFSRRRVTVAAPHQLIVITVLFGFMLVVIAMAYMRNQLRPIKRLADAAEAFGRGRVIPYH
PRGATEVRAAGAAFNDMRARIDRQIEQRTLMLSGVSHDLRTPLTRLKLSLSMLDDEEAEPMLQDVKEMEA
MVDAFLDFSRGVTTSAMEETDPCKLVEEAVENWTRQGKTVHLVETVGNRRVPLRAAAVRRALDNLISNAV
RYGTRARVSVAVMQKSLRIRVEDDGPGIPEALRGDAMRPFTRLDPARNQDLGTGVGLGLAIVADIARAHG
GTLRLGTSEELGGLQADIVIAL
>gi|99081321|ref|YP_613475.1| beta-lactamase-like [Ruegeria sp. TM1040]
MSRSQPTDGFNPKPGFAEMIAPGIRRILAPNPSPMTYRGTNTYLIGTRNLAVIDPGPGSEPHLEAILSSL
NAGQSIDAILVTHSHLDHSPLAKRLQEETGAAIYAFGPAGAGRSAIMETLAQEDVTGGGEGIDHAFSCDH
VLKDGETLSGPDWQIEALHTPGHLGNHLCFALGDILFSGDHVMGWASSLVSPPDGDLTDFMASCRKLQDR
QWSRFLPGHGAPIDAPHARLDWLIAHRLERERAILAELRIAPRTVSELAATIYKETPAALLKAAERNVFA
HLVDLTQRNIAQPEGALSLSTRFSCTD
>gi|99081322|ref|YP_613476.1| NAD-dependent epimerase/dehydratase [Ruegeria sp. TM1040]
MTSEQVFDLRGKRIFVAGHRGMVGGAVLRRLAEEDCEVVTAGREDLDLTRQQAVMEWMAATRPDAIIMAA
ARVGGIKANSDYPVDFLLQNLQIETNLAEAAHAADVQRFLFLGSSCIYPKFAPQPIPEASLLTGALEPSN
EWYAVAKIAGIKLMQAYRQQYGRDWISAMPTNLYGPGDNYDLETSHVLPALLHKFHTARLTGADQVTLWG
SGTPLREFLHCDDLADALVFLLKHYSGADHVNVGSGKEISIRALAELIAEIVGVSPELVFDSSKPDGTPR
KLMDSARLAAMGWSGARPLRDGIAETYAAFVAQLDSVEA
>gi|99081323|ref|YP_613477.1| GDP-mannose 4,6-dehydratase [Ruegeria sp. TM1040]
MTKRALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTSRIDHIYQDPHTDRARFKLHYGDLADTSN
LTRILREVEPDEVYNLGAQSHVAVSFEAPEYTADVDAIGTLRLLEAIRFLGLEQKTRFYQASTSELYGLV
QETPQRETTPFHPRSPYAVAKMYAYWITVNYREAYGLYACNGILFNHESPRRGETFVTRKITRGLANIAQ
GLEPCLYMGNIDSLRDWGHAKDYVRMQWMMLQQDTPEDFVIATGKQSSVREFIIWSAAELGIELEFSGKG
VDEVATVTAINGDAAPALRVGDIVMRIDPRYFRPAEVDTLLGDPTKAKEKLGWVPEITAQEMCAEMIEED
LKTARRHALLKEHGYDLPVCIGE
>gi|99081324|ref|YP_613478.1| DegT/DnrJ/EryC1/StrS aminotransferase [Ruegeria sp. TM1040]
MTTSKTVKPVLLAEETISQDDLKITTEWMLAGNRLTKAEVTSQFEASFAEWMGCNYAVFVNSGSSANLLM
IYAAKEAGRLRNNKVIAPGVSWVTTVSPLMQLGFDVRLCDCDPLNLGLDLNHLEELCRTEAPSMLLLVHV
LGHANHLREIKEICARYDVILLEDSCEALGSTFEGQKLGCHGLAGSFSFYYGHHISTIEGGMVVTDDQEL
HQVMLSLRSHGWSRDLAPGRQADLQRTHNVDEFRNLYTFYYAGFNLRSTDLQAYIGLQQLKKLDEICRIR
AENFETYAQGLPGFFKQQSETELLSSFAYGTLVENRMEVARALKAESIECRPLICGNIARHPFWVRVYGD
QVLPNADLIHDFGIYLPNHHNLNAADIDRVAECFNSVACPMDSNLRQSA
>gi|99081325|ref|YP_613479.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MTESVSIVIPTFNRAEMLPKAIDSALAQTHSCEVIVVDHGSTDSTPEVAASYGDKITYVRRDRDFGPHFC
WLDGILHANSTYVHLQYDDDWIAETFIEKCLSVMGEDVGFAFSGAEVIDDKSGRQMMTQFLEWLPQTGTF
DNHLAEEKIVGSLISPGAALFRKQVLIDALYQGRLPLQTSEYHGVGPDIFASLLSMLRYPRVGFVKEPLA
SFRAHDGSITIDAFKDAQKKRDIAAAYNEVRAYYVELKAMQMVRAAQ
>gi|99081326|ref|YP_613480.1| NAD-dependent epimerase/dehydratase [Ruegeria sp. TM1040]
MSQPLRIFLTGSGGILGRHVSTALLAHAPGAQVLRNTADLTDLAATTRVVQRAGPLDLVIHLAALVPVDE
VCADPARGYAVNAGGTINLLAALAAAEVGQATPARLLHCSSGHVYAAQDRPISEEDPTDPVSVYGKTKLM
GEQAARDICAQVGRALCVARLFSIHDPAQEGNYLRPSLERRLAKASPETEFELYGAGSLRDFLTAEAAAQ
QLVRLAISSFEGVVNLGSGRAQTVAEFAQSFAPFPLKIKAMGADNNLVPDVSLLHDILGEAND
>gi|99081327|ref|YP_613481.1| hypothetical protein TM1040_1486 [Ruegeria sp. TM1040]
MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGDTAPEWLAAPW
HSFSEPLTIYEAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTDTALIGGEWIIQFDHAFQTEV
FGSSDPKQTCFEPAWPPAPIEGDKRLRLGSGTGERGTLGPATLWDLEKTQRWYPTHFGNRDPILSIGDAI
FWQHLHKKKLRTARLPLVIGRYFSSPDAQAEFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGA
SPFPKSRNAIENESQALALKYLGLLGHGTPAASHPRA
>gi|99081328|ref|YP_613482.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Ruegeria sp. TM1040]
MLFKKSKTAASSSLNDDQKLRAMIENTQAVIEFKVDGTIIRANKVFLDTLGYTLEEIEGQHHSMFVYPSF
VRKDAYKQMWRDLAAGNPLTDQFPRLRKDGEVVWIQATYAPFFNEDGTVDRIVKIASNITKRRMEILGIA
AALEQLRNGDLTYRCAPSDIDDIGRLSTAYNEAVSSLQNTIRTVREVADGVTRTAGQLNDSSSELSQRTE
NQAATLEETAAAVEELTATVRSSADGAREVEDNVRQARVTAEKSGQVVSDAVKAMSKIEESSQSISKIIS
VIDDIAFQTNLLALNAGVEAARAGEAGRGFAVVASEVRNLALRSADAAGEIKGLIDQSATHVSDGVTLVG
RTGTELEAIISSVNSISENVSVIARGAEEQAVTLSEINSGIGHLDEVTQNNVAMVEETTGASQTLASDAS
VMSKEIANFVSEGEIKIAKHVAPIPNTPPPTVEPELELRTGT
>gi|99081329|ref|YP_613483.1| hemolysin-type calcium-binding region [Ruegeria sp. TM1040]
MATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVGTNGVIGFDWD
STTYNPEGLEGFNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLDVAPSSGAGTNSFQVVLTDTG
GGNFDLEFIYEDIQYGDGDTLGNSVGLTDGNGNVYELEGSRDTNDATQYETTSFDSGPAPGHFSTSVVDG
TPDVYSIDGTSGADNMDVGYTDADGQDITNQDDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDA
AAPTYVQVYNGDNYHGTTGQDFYHWNAETGSNAVIRMNNTPTESGSGDGEADYVVVGTTNNTGTLTIGDF
DVGNDRIVLPEAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGSTPLTASEVFTTEVPTVTASD
NDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSDTITFSDIEQI
TLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGGLGDDVMTSAGGEDLFVLTTS
GGRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVTRNDVVVSDDGSGNAVLTFPDGEQLVLLGVP
PTFMSAPANLYSAGIPCFTTGTLIDTATGPRPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPR
LRPITLHPGGSLQLAQPMTVSRQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLER
HQVLFSGGVATESFFPGPWSLRGLSPRSVAKLAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAE
LRERLRATRLKQSA
>gi|99081330|ref|YP_613484.1| acetyl-coenzyme A synthetase [Ruegeria sp. TM1040]
MTTPESAVYPPSEDIVKNAHVNAAKYDEMYAQSLENPEKFWAEQAERIDWIKPFTKVKNVSYDFGNVDIK
WFEDGQLNVAANCIDRHLETRGDQTAIIWEPDDPSDEAKHISYKELHLRTCRMANILESMGVGKGDRVVI
YLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARINGCDAKVVITADEAPRGGRKTPLKSNADAALL
HCKESVKCLVVRRTGGQTTWIDGRDHDYNEMALEANDYCKPAAMDAEDPLFILYTSGSTGQPKGVVHTTG
GYLTYAALTHEVTFDYHDGDIYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWAVCEKH
KVNQFYTAPTAIRALMGQGTEFVEKYDLSDLKLLGTVGEPINPEAWNWYNDVVGKSKCPIVDTWWQTETG
GHLMTPLPGAHATKPGAAMKPFFGVEPVVLDPQSGAEIDGNGVEGVLCIKDSWPGQMRTVWGDHERFEKT
YFSDYKGYYFTGDGCRRDADGDYWITGRVDDVINVSGHRMGTAEVESALVAHAAVAEAAVVGYPHEIKGQ
GIYCYVTLMNDREPSDELLKELRQWVRTEIGPIASPDVIQWAPGLPKTRSGKIMRRILRKIAENDFGSLG
DTSTLADPSVVDDLISNRANKG
>gi|99081331|ref|YP_613485.1| adenylate kinase [Ruegeria sp. TM1040]
MTTDVMTRPAVLILLGPPGAGKGTQARMLQEKYGLVQLSTGDLLRAAVAAGTDAGKQAKAVMDAGGLVSD
EIVIAILKDRMNDADCRNGVILDGFPRTTVQAKALDGLLASTGQRINAAISLEVNDSAMVTRISGRSTCA
DCGEGYHDTFKPPMPGEVCAKCGGETLTRRADDRAETVASRLEAYHAQTAPLIAYYQEAGVLKSVDAMAE
ISSVATQISSVVETILH
>gi|99081332|ref|YP_613486.1| flavin reductase-like, FMN-binding [Ruegeria sp. TM1040]
MTLTSFTPGPDTQAEMRAALGCFATGVVVVTTQTERGPLAMTVNSFTSVSLTPPLVLWCPAVHSKRHDPF
VGAKHFSIHVMAEDHMDAALHFARHGEAFDVHPWSRNTQNQPVLDDAMVRLDCAHHAAHPGGDHTILVGE
VLNVSRRADLGPGLVFHQGKYGRFSD
>gi|99081333|ref|YP_613487.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
MHASLVRGSAPRCTGERMSQLTSELGFCGAASPNVRRSAVLERVCLKARLRTRIGGAPEALVLYYAASVP
AHVNGDLRGSYAVTNLRVCPSGCLRTEDVLGALAHGFSRVFIELSPDIRLIHRQLDLVEDIAACAGLDGT
VALFHSENALSVLLDDPIKDDADAAIPPEPRAETEAPSVAGYVSLTDGCTLCQHCVWSCPTDAMHLGDTG
NTLEIRDQACTGCGLCASACPERVLSILPVATVLCSA
>gi|99081334|ref|YP_613488.1| ABC transporter, periplasmic substrate-binding protein [Ruegeria sp. TM1040]
MKNVLTAAAMALMATSAAQAADEVKLQLKWVTQAQFAGYYVALDKGFYGEEELDVTILPGGPDIAPTQVI
AGGGADVTVEWMPAALAAREKGLPLVNIAQPFKSSGMMLTCWKDTGISAPKDLADRTLGVWFFGNEFPFM
SWMGKLGISTEGKGPEGVEVLKQGFNVDPLLQRQADCISTMTYNEYWQVIDAGVSADELVTFKYEDQGVA
TLEDGLYVLEDNLSDPAFVDKMERFVRASMKGWKYAEENPEEAAEIVLDNDASGAQTETHQKRMMGEIAK
LTSGSNGALDVADYERTVQTLLSGGSDPVITKAPEGAWTHAITDAALN
>gi|99081335|ref|YP_613489.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MYLVFLAAVVWCAGWWINTRLANGPKADSRAVGLLVPAIFGVTILIVWELLVRGLEVPLVILPAPSLIAE
RFAASLPILWADFSQTILKGALGGYVIGCGAAFLTAILVDRSDFLRRGLLPVGNFVAALPIVGTAPILVM
WFGFDWQSKAAVVVVMVFFPMLVNTVAGLRETDQMQRDLMRTYAASYWQSLIKLRLPAALPFVFNGLKIS
TTLALIGAIVAEFFGSPTVGMGFRISTSVGQLALDMVWAEIVVAALAGSLFYGLVALLEKSLTFWHPSQR
G
>gi|99081336|ref|YP_613490.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MKTFMAVLTVVAGIIGLWYLACVPMNIKGVLDAAERAGEQVEPATARERRDASALGLVVQNSFAISRAWS
VERPRLPAPHQVATELWDTTVMKKITSKRSLIYHGQVTLSATLLGFAIGTGLGILLAVGIVHSRVMDMSV
MPWAIVSQTIPIIALAPMIIVVLYSIGVQGLLPKAIIAAYLSFFPVVVGMVKGLRSPDHMQLDLMKTYNA
SQGQVFWKLRLPSSMPYLFASLKIGIAASLVGAIVGELPTGAVAGLGARLLAGSYYGQTVQIWSALFAAA
ILAAALVALLGVLERMLLGRMGVKP
>gi|99081337|ref|YP_613491.1| ABC transporter related [Ruegeria sp. TM1040]
MIQARDLDLVFGSGDTSVHALKDINLTINKGDFVSFIGPSGCGKTTFLRCIASLETPTGGSLTVNGMTPE
EARKQRAYGYVFQAAGLYPWRTIAKNIKLPLEIMGYSKAEQDKRVAEVLELVELAGFGGKFPWQLSGGMQ
QRASIARALAFDADLLLMDEPFGALDEIVRDHLNEQLLKLWARTNKTIGFVTHSIPEAVYLSTKIVVMSP
RPGRIHEVIESTLPKERPLDIRDTPEFIEISHRVREGLRAGHAHD
>gi|99081338|ref|YP_613492.1| phenylhydantoinase [Ruegeria sp. TM1040]
MTTVIKNGTIVTADLTYKADVLIEGGVITEIGPDLKGDEVLDASGCYVMPGGIDPHTHLEMPFMGTYSSD
DFESGTRAGLAGGTTMVVDFALPQPGESLLDALKRWDNKSTRANCDYSFHMAVTWWGEQVFDEMKTVIET
RGINTFKHFMAYKGALMVNDDELYASFQRLAELGGIAMVHAENGDVVAELSAKLLAEGNTGPEAHAYSRP
PQVEGEATNRAVMIADMAGVPLYVVHTSCEESHEAIRRARMLGKRVWGEPLIQHLTLDESEYFNPDWDHA
ARRVMSPPFRNKQHQDSLWAGLQSGSLSVVATDHCAFSTEQKRYGVGDFTKIPNGTGGLEDRMPMLWTHG
VETGRLTPNEFVAVTSTNIAKILNCYPKKGAVLVGADADLVVWDPKKTKTISAESQQSAIDYNVFEGKEV
KGLPRYTLTRGQVAVMDGEIKTQEGHGKFVERAPNTVVNKALSTWKELTAPRPVERSGIPATGV
>gi|99081339|ref|YP_613493.1| allantoate amidohydrolase [Ruegeria sp. TM1040]
MTALGQNLKINGDRLWDSLMDMAKIGPGVAGGNNRQTLTDEDAEGRALFQSWCEAAGMTMGLDSMGNMFA
TRPGEDPEALPVYMGSHLDTQPTGGKYDGVLGVLGGLEVVRTMNDLGIKTKHPIVVTNWTNEEGTRFAPA
MLASGVFAGKHTQDWAYGREDAEGKTFGDELKRIGWVGDEEVGARKMHAMFELHIEQGPILEAEKKDIGV
VTHGQGLWWLQCTVTGKDAHTGSTPMNMRVNAGLGMARMTEAAHQIAMAHQPHAVGAVGHCDVFPNSRNV
IPGKVVFTVDFRSPDLEKLTSMRTQYEAKAKEIAAELGLGLEIEPVGHFDPVTFDESCVSAVRGAAERLG
YSHMDIVSGAGHDACWINDVAPTAMIMCPCVDGLSHNEAEEISKDWAAAGTDVMLHAVLETAEIVA
>gi|99081340|ref|YP_613494.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MASDRSPTRIQKRNRANILEAALEVFSQHGFRGSTVDQVATAAGLSKPNLLYYYPSKEAIFTELLSKLLD
DWLAPLHEIDPDGEPMEEILGYVQRKLLMSQSMPRESRLFANEIVQGAPRMIDTLSTDLRALVDKTELIF
QNWMDAGKIAPVHPRHLLFSIWSLTQHYADFEVQVQALMTPEDPFEAAPEFLDTLYRRMLTPP
>gi|99081341|ref|YP_613495.1| dihydropyrimidine dehydrogenase [Ruegeria sp. TM1040]
MADLTTEFLGIKSPNPFWLASAPPTDKEYNVRRAFEAGWGGVVWKTLGAEGPPVVNVNGPRYGAIWGADR
RLLGLNNIELITDRPLDVNLEEMTRVKKDYPDRALIASIMVPCEEAAWKAILPRVAETGCDGIELNFGCP
HGMAERGMGSAVGQVPEYIQMVTEWCKQYYDKPVIVKLTPNITDIRHPARAAKAGNADAVSLINTINSIT
SVNLDAMSPEPMIGGKGTHGGYCGPAVKPIAMNMVAEISRDPQTAGLPISAIGGVTTWRDAAEFIALGAG
NVQVCTAAMTYGFKVVEEMISGLSDWMDEKGYSSIEDFRGMAVPNVTDWQYLDLNYVTKAKISQDDCIKC
GRCYAACEDTSHQAIEMSADRTFTVKDDECVACNLCVNVCPVEGCITMEEVAVGAIDERTGKVVSGEYGN
WTQHPNNPSATAAE
>gi|99081342|ref|YP_613496.1| putative oxidoreductase [Ruegeria sp. TM1040]
MAVGHQVSGVRSERLSAQEIAENFADLHAPYDAHEAAVAADRCYFCYDAPCMTACPTSIDIPQFIREIQA
GHAESAAKTILEQNILGGMCARVCPTETLCEEVCVREVAEGKPVEIGRLQRYATDMLMEKGAHPFTRAAA
TGKRVAVVGAGPAGLAAAHRLAMHGHEVTIYESKPKAGGLNEFGIAAYKSTNDFAAREVEWLLQIGGITI
EYGQGLGAGLTLDGLQADFDAVFLSVGLQGVNALRAEGEDKDGVRDAVDFIAELRQAEDLRSLPVGRNVV
VIGGGMTAVDAAVQSKLLGAENVTIAYRRGRDAMGASRFEQDLAASKGVKLMFNVMPKAIHGNGAAAEIE
LEYTEIVDGRVKGTGETLRLAADQVMKAIGQTLEGQPDALALEGGKIKVSETGKTSVAGVWAGGDCASGG
DDLTVTAVAEGRDAAEDIHASLMG
>gi|99081343|ref|YP_613497.1| hypothetical protein TM1040_1502 [Ruegeria sp. TM1040]
MDMTEDEKSENYRVTAGELRQFVERFERLDEEKKAIAEQQKEVMAEAKGRGYDVKVLRKIIALRKRDEND
IAEEEAVLEMYKEALGMS
>gi|99081344|ref|YP_613498.1| hypothetical protein TM1040_1503 [Ruegeria sp. TM1040]
MEYLIWAGGGLSILGMVGLVWCVWTVVRAKRKGLTDDELRDVLQSVLPKNLGALLLSVLGLMLVMVGLFL
R
>gi|99081345|ref|YP_613499.1| hypothetical protein TM1040_1504 [Ruegeria sp. TM1040]
MTSQQLIERACDLEQEIRTASEAARQDLHQEFARILRRIEAAGVPVPGHLRRTEQVLNDELVESQFDNMP
I
>gi|99081346|ref|YP_613500.1| hypothetical protein TM1040_1505 [Ruegeria sp. TM1040]
MDARTLTPRYSVSPQISVEDIPAIKAAGFTTVICNRPDAEVPPSHQAEAIRAAVEDAGLSFQVLPLTHQT
MTPENVEKQGAFVQSSEGPVLAYCASGTRCSVIWALGQVANPEISVDDIMSTTQEAGYDLSGLRPTLEAL
KG
>gi|99081347|ref|YP_613501.1| surface presentation of antigens (SPOA) protein [Ruegeria sp. TM1040]
MTDKDQTEEGNRAVGGLARKLAASKEGTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPED
LTGLLSDKHLLVVLDCPAGRIGAATLDAAAVTALIQQQTMGTVLGMSGDERNYTPTDAAMVAEFLEKLFA
KVSSLLEDQTDLSIFEGYRFGAQVEDVRTLVLGMEAEDYRVINLNVDLATGKMQGEICLVLPEPSVDEYD
EANAIRGPRLGSSVGSMRAELTAVLCKMRVPLRQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLG
QMNGARAVRLDQQRTRLVPHNEGSFSDGIGHGGAPALEDNTLDLSIAAHGLQEPGDGLGGDLGGMMGGDL
GVDLGGDLGGDLGGDFGGGLEGGDLPMGDFDAMGELPELPMNDLGDFNADDTAAEISELAGLSDLSETGT
>gi|99081348|ref|YP_613502.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MTSLNLLAVVSIGYVALLFMVAFWADRQALRGRSARFMRSPLIYTLSLSIYCTAWTFYGAVGYAARSGME
YVTIYLGPTLVMIGWWWGLRKLVRVGRSQRISSIADLLSARYGKSNVLAIGVTVLAVVGVTPYIALQLQS
ITLSVAIFAEADPSRGHNESGTVFWIAMGLACFAILFGTRNLNANERHHGVVMAVALEAVVKLIALVAVG
VFVVWGIAGGIEETLARIDRSPIGHWQVDGGRWTAITFLAAAAFVCLPRMFQVMVVENEDERHLRVAAWA
FPTYLLLISIFVVPIAAIGLELLPQGSNPDLFVLALPLSQGQNGLAMLSFLGGFSSATSMVIVAAMSLST
MVSNHIVMPIWLRSTGAFKGASVSGDVRSVVLFARRFSIAAIMALGYAYYQISGGGAALAAIGLIAFSGI
AQILPALVGGLFWRGATRAGALAGLTIGFVVWSYTLLLPEVAGGVFSNATLSEGPFGVGWLRPQALFGIE
GFDPIVHSVLWSMSLNVAAFALVSVLSFPSPMERLQGAQFVHVFDHSAGPGGWTGSVAQSEDLMIMSQRI
LGPEEAQKFFQAALERQGGPGPLPEPTPSFLEQLERELSASIGAAAAHAMIGQIVSGAAVSVEDLLAVAD
ESAQLLEYSSRLEAQSKELSRTALQLRETNQKLTRLSEQKDAFLSQVSHELRTPMTSVRAFSEILRDEPS
LNPAEQHKYASIIHDEALRLTRLLNDLLDLSVLESGSVSLNVSRRPLGDVLDHALSSALAGAEGPLRVVR
DRNSEAVEIETDVDRLAQVFINLIANAQKYCTAAAPELRINVRVFANRVDVEFIDNGAGIPADFREMIFE
KFSRVTPERAGGAGLGLAICKEIMRKLGGDIHLLATQKGAAFLVSLPRETKIEEIL
>gi|99081349|ref|YP_613503.1| hypothetical protein TM1040_1508 [Ruegeria sp. TM1040]
MIRSDGAGSKDELRAPFVERRTYRRRRLMDIARIAPILGALLFLVPLLWPEPSGPETSQAAGSMSGAMIY
IFGVWIGLILFSVGFSVAVRLWAVHWTGVGAPTDTADVLAPRALPETGLERTDTPRPADNSDPEGDA
>gi|99081350|ref|YP_613504.1| response regulator receiver protein [Ruegeria sp. TM1040]
MAGRVVLIEDEANIAEAIRFLLSREGWQVDVHADGGTAVSVIEAKKPDLVILDLMLPGKSGMEIIRELRE
LSAFSDLPVLMLTARGQLKDREMAERAGVTRFMTKPFSNTEVLTAVRDLDAQARQSQAQAAAVRDAG
>gi|99081351|ref|YP_613505.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MPGDSLTGSRIRERRMMLGLRQADLARDAGISASYLNLIEHNRRRIGGKLLVTLAQVLGVEPSLLTEGVE
ATLVASLREAAAEARTPMVELDRVDEFAGRFPGWAEVLAQTHGRIGALERTVRSLSDRLTHDPHLAASLH
EVLSTAAAIRSTAGILAEPGELEAEWRDRFHKNLDQDAQRLADSSRALVRFLDESDQDGERRGIPQEEVE
AFLVAREFHFPELEEGTASPRELVQSVSELESTAARKLAEAALEVYREDAERMPMAALTAAIARHGLVPG
KLAQALDVEIYRLLRRLAMMPEDVLGVSVGLVICDASGSILLRKPVAGFPLPRFGASCPLWPLFTALSQP
GVPIQRNVHQEGRAARDSTCFAISWQAEPSDFDRDPVLRSVMLILPSEQPDQPPASGSRPVGASCRICAR
RGCAARREPSILRDARGARLTQL
>gi|99081352|ref|YP_613506.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MSKSDVSRRGLLRTGAVAGAGLAMPTIFTAQSAHAFTNNPTGGTVTLGFNVPQTGPYADEGADELRAYEL
AVEHLNGGGDGGMLTTFSSKALQGNGILGKKVEYVTGDTQTKSDAARASAKSMIEKDGAIMITGGSSSGV
AVAVQALCQEAGVIFMAGLTHSNDTTGKDKRANGFRHFFNSYMSGAALAPVLANAYGTDRKAYHLTADYN
WGYTTEEAVRSSTEAMGWETVAAVKTPLTQTDFSSYIAPVLQSGADTLVLNHYGGNMVNSLTNAVQFGLR
DKQVNGKDFQIVVPLYSRLMAKGAGANVKGIFGSTNWHWSLQDEGSKAFVRSFGTKYGFPPSQAAHTCYV
QTLLYADAVERAGSFAPCAVAEALEDYEFDGLGNGKTLYRGADHQCFKDVLVVKGKENPTSEFDLLEIVE
VTPVGQVTYDPNHPQFQGGALGTCNNGA
>gi|99081353|ref|YP_613507.1| inner-membrane translocator [Ruegeria sp. TM1040]
MDAIILQILNGLDKGSAYALIALGLTLIFGTLGVVNFAHGALFMIGAFCAVTLSRILTLSHTIIDETKTD
FLGNPLKVEVPYVHDIFGVEMGNAIIDWSVPLSVLFAIPIMIAVGVIMERGLIKHFYKRPHADQILVTFG
LAIVLQEVIKYFYGANPIPTPAPEAFKGSLDFGAALGFDPNLIIYPYWRIIYFCFAAVIIGGVFAFLQFT
TFGMVVRAGMADRETVGLLGINIDRRFTIIFGVAAAVAGLAGVMYTPINSPNYHMGMDFLVLSFVVVVVG
GMGSLPGAVLAGFLLGVLESFASMREVIDIIPGINQVIIYLVAIIILLTRPRGLMGRKGVMED
>gi|99081354|ref|YP_613508.1| inner-membrane translocator [Ruegeria sp. TM1040]
MFKLEKTDLKLLMIVAVLTMFAPFILNPFPVDSAMAQFNAGYPDLMQRFVIFGVFAIGFNILFGLTGYLS
FGHAAFLGVGSYAAVWMFKLLSMNVLPAIVLSVLVSGLFSLVIGFVSLRRSGIYFSILTLAFAQMMFALA
YSVLTPITGGETGLQLALDDPRILGASQTAEGNIPVPSLFGLEMRDSAELVIGGWSFTFNFGYYFCALVM
LASFYLAIRIFRSPFGMMLRAVKSNQQRMNYTGLNSRPYMLAAFVISGMYAGLAGGLMASMDPLAGAERM
QWTASGEVVLMTILGGAGTLIGPVLGAGFIKYFENIFSKINDNVLHSWFSFLPDGLEDFVVFIIHPFIGK
GWHLTLGILFMLVVIYLPGGLVEGGQRVGNWLKGRKKSDAKQSNTNPAE
>gi|99081355|ref|YP_613509.1| ABC transporter related [Ruegeria sp. TM1040]
MSILEVKNVGKRFGGLQALSDVNLSVKENSVHAIIGPNGAGKSTLLNCLVGKLIPDTGSVMFDGQSVLGR
APYEINQMGISRVFQTPEIFGDLTVLENMMIPCLAKRDGAFELNAIAAVMSQRDILDRAEAMLVEMNMAD
KRHMHAASLSRGDKRRLEIGMCLSQEPRLLLLDEPTAGMARADTNNTIDLLKQISDERDITIAIIEHDMH
VVFSLANRITVLAQGTPLVEDDPQNIRGNPKVREAYLGETA
>gi|99081356|ref|YP_613510.1| ABC transporter related [Ruegeria sp. TM1040]
MNVKPDFSKSANHAATAPAFLSVWDVHAYYGESYIVQGINFNVHEGEILALLGRNGAGKTSTLRSIARIG
SPMVTRGEIWLDHQPLHLMESHEAATAGLGLVPEDRRIIPGLTVEENLQLAQIAPPIGWSIERLYELFPR
LGERRKQEGVTLSGGEQQMLAIARALARDIKVLLLDEPYEGLAPVIVDEIEKTLIHIKEQGMTTILVEQN
TVRALQLADRAVILDTGGIVFDGAAAEVLENEELRSEYLAI
>gi|99081357|ref|YP_613511.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
MSDPATDPAFDYAPVGLALLEHRIIKRCNLLFAEIFDAPPEALCETPIAALYPSAEDYQRIGEILQLPES
QSGIYHDERIMRRTSGALFWCRVRGRSLDGARPFQAGVWSFADLSEERPVVSLTPREREVAILTCRGLSA
KEIGLKLDLSYRTVETHRARLLVKFNAKKLPELVAKLSGMPL
>gi|99081358|ref|YP_613512.1| biotin carboxyl carrier protein [Ruegeria sp. TM1040]
MTNKSHEADVAFIKALAELLRENDLTELQVKRDYAEDDSLNVRVSRQHPAPAAPVHVAAAPAPAPAAAAP
AAVAAAAPASDDPANHPGAVTSPMVGTAYLAPEPGASAFVSVGQQVSEGDTLLIVEAMKTMNHIPAPKSG
TVKRILVEDGAAVEFGHPLVIVE
>gi|99081359|ref|YP_613513.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ruegeria sp. TM1040]
MFDKILIANRGEIALRVIRACREMGIQSVAVHSTADADAMHVRMADESICIGPPSGAQSYLSIPAIISAC
EISGAQAIHPGYGFLSENANFVQIVEDHGLTFIGPSAEHIRQMGDKITAKDTAKALGIPCVPGSDGGVPD
VETAKKVAAEMGYPVIIKATAGGGGRGMKVAQTEADLVQAFQTARSEAKAAFGNDEVYMEKYLQRPRHIE
IQVFGDGKGGGVHLGERDCSLQRRHQKVFEEAPGPCITEEERAKIGKICADAIGKMGYSGAGTVEFLYED
GEFYFIEMNTRLQVEHPVTEAIFGVDLVREQIRVASGLPLSFTQDDLIINGHAIEVRINAEKLPNFSPCP
GKITAYHAPGGLGVRMDSALYDGYSIPPYYDSLIGKLIVHGRDREEALARLSRSLGELIVDGIDTTVPLF
HALLQEKDIHTGEYNIHWLEKWLEANLQA
>gi|99081360|ref|YP_613514.1| leucyl/phenylalanyl-tRNA--protein transferase [Ruegeria sp. TM1040]
MTLSADLLLHAYANGVFPMAESRDDPEVFWVDPKRRGILPLDGFRISRSLAKRLRRDDYSISVNRDFAGV
VQGCADREETWINGEIFDRYQELHHDGFAHSLEVWMDDALVGGVYGVSLGGAFFGESMFSRRRDASKIAL
AYLVDRLNAGGYILCDTQFITPHLASLGGREISRAAYRRRLAEALDQPGDFISPALPSPQVLLQRRTQTS
>gi|99081361|ref|YP_613515.1| hypothetical protein TM1040_1520 [Ruegeria sp. TM1040]
MKRLITLAFCLLASAPLSAQTISVEELDPVIVQPRVPESRERVERIEATEGTLTSLRGLDKVNGKSVDVE
VQTGGTAEIFGLIVTLRECRYPTENPSGDAFAYLTIRDRQDGKVFFDGWMIASSPALNALDHRRYDVWVL
RCKST
>gi|99081362|ref|YP_613516.1| hypothetical protein TM1040_1521 [Ruegeria sp. TM1040]
MTHSTTEVLTGGLVLAVAAGFAFYAAQAAGLSRGGDSYPLTASFRSLEGVSVGTDVRLAGVKIGTVTDVA
LNAETFRADTTFSVDKSIMIPDDSAIVIASEGLLGGNFVEVMPGGSPFNLEAGDEIVDTQGAVSLISLLV
KFVSGGGDES
>gi|99081363|ref|YP_613517.1| NADH dehydrogenase [Ruegeria sp. TM1040]
MGILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEASRVSADWHGW
LHRTFNEVPSEKPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRSDYEAWSPE
>gi|99081364|ref|YP_613518.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MEQTSQTVTIRPAIPVVRIFDLQKARDYYIDYLGFSLDWEYQHEEDLPIYMQISRSGCILHLSEHHGDAT
PGSTCFVPIDNAMALHAELGEKRYRNIKPALDAMPWGLQITVTDPFGNRLRFCEQRSRGS
>gi|99081365|ref|YP_613519.1| endoribonuclease L-PSP [Ruegeria sp. TM1040]
MTIKRISSGGEFEAKVGYCRAVVAGGFVHVAGTVGQGEDVVAQCRSALATIEAALAKAGVSFAEVVRVNY
YLPDASEFEPCWPILAETFGENPPAATMIECNLIAPEYRIEIEVTALATPA
>gi|99081366|ref|YP_613520.1| dienelactone hydrolase [Ruegeria sp. TM1040]
MKSEAFHYGDGIDQFVGHLVCDDSREEPAPCVLIAPAFGGLSDFERARAEDLAKLGYVALAVDYYGDGKR
AASPEEAQHLMAGLQADRTVLARRMGAALEAARALPQVDAGRIGAMGYCLGGKAVLDLARTGADLRACVP
LHGVYDRPNFETQTMRAAVLVLHGWDDPLAPPSALEALAAELNEHCADWQVLGFGHTGHAFTNPNAKDSA
GGMIYSATASSRAWTALTGFLAETFEGAASA
>gi|99081367|ref|YP_613521.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria sp. TM1040]
MATNSSGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKASGMKATDGVPTPKDIC
EVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGNDIELSKSNILLIGPTGCGKTLLAQTLARILDVPF
TMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSITRDVSGEGVQQA
LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIKQRGKGSAMGFGADVREESDAG
VGETFRDLEPEDLLKFGLIPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTD
EALSAIAKKAIERKTGARGLRSILEDILLDTMFELPGMESVTKVVVNEEAVCSEAQPLMIHADEKESATA
G
>gi|99081368|ref|YP_613522.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria sp. TM1040]
MIPRQAGPMIDPTETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA
ENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMVH
QPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPEQAKEFGLIDEIVENR
SKADDAES
>gi|99081369|ref|YP_613523.1| transcriptional regulator [Ruegeria sp. TM1040]
MSDDSFVQKGAAATLKVPHAGAPQDFYFLLLPKATMLPVAAAIEPLRIANQVTNTKLYRWYIMTQDGAPL
RCSNGMVVTPDLPLAPLPSDAMGFVCSGVEPQEAAGDITLNWLRREHRFGRKLGGICTGAFALAQAGLIK
DQPFTLHWENQPGFVERYEHLKPSPNIYEISGNLMTCGGGSAATDMMLTLIEQRHGKQLAIIVADMCLHV
RSTSGAAPQKSNYAVAIGSRNQRLLSALQLMQESIEEPLSIGTLCARLDISRRQLERLFSRYLDQSPMHV
YSDMRLSHAFALMNETSMSVTEIALASGFNSATHFSRQFKRKFGASPHFFRKGWA
>gi|99081370|ref|YP_613524.1| hypothetical protein TM1040_1529 [Ruegeria sp. TM1040]
MVRPLDPLRRLSTGLVFSLALSAAQTAALTAALAASFATPATADLAAREGWAIHASTKDYKRLLADLKAA
VRAHNMGVVTEAGPTGAAAARGITIPGNRVVGVFANTYAVEILALSTAAMIEAPIRFYITENPDGSATLS
YKTPSHVFAPYVPEAGAALTAVAARLDDVFAQIAAAALQN
>gi|99081371|ref|YP_613525.1| thiamine pyrophosphate enzyme-like TPP-binding [Ruegeria sp. TM1040]
MTQSLRAADILARRLYEAGCRHAFGMPGGEVLTLVDALTRAGITFHLAKHENCAGFMGEGVHHSDGAPAI
LVATLGPGALNGVNVVANAHQDRVPMLVLTGCVDADEAQTYTHQVLDQQAVFAPITKASFRLNAAAAEVI
ADKAVAIAGEARQGPVHIDVPISVANAPATPRNTRRAPAGACAPAGATLAQAQDWLHEAKRPLAVVGLDA
LLPGGPDATRAFLEARQIPFVTSYKAKGILPEDHPLCLGGAGLSPLADRHLLPLIEASDLILGIGYDPIE
MRTGWRAAWDATETRVIDITPEANTHYMHQASLPLIADIPATLNALAVAPQPAPPWPNGEIEKAKTALAE
AFPRSDDWGPAGVIAECIDTLPADSLLTADSGAHRILLSQMWPCQEPRQLVQSSGLCTMGCAVPLAMGRK
LAEPERTVVSFSGDAGFLMVAGELATAAELGLAPIFVVFVDASLALIDLKQRQRQLPNAGVDFGRHDFAA
IGRAFGGEGHRVQNRTELRAALEAAQSASTFTVIAAEIDKESYDGRI
>gi|99081372|ref|YP_613526.1| L-carnitine dehydratase/bile acid-inducible protein F [Ruegeria sp. TM1040]
MMAASDTTAPARLPHGALKGVKVLDLSRILAGPTATQLLGDLGADVIKVENPTTGGDDTRQWGKSVAEDA
DLTPYFMAANRNKRSLALDISAPEGQAIIRRLAAQADVLIENFKPGGLAKYGLDYASLRESCPHLVYASI
SGYGQTGPNRAKPGYDLMAQGYGGIMSLTGDPEGAPVKVGVGIADVMCGMYATIGILSALRHRDLTGEGQ
QVELALVDAQIAWLINEGVSYLNTGQKPVRRGNEHPSIMPYGTYETRDGHVILAVGNDSQFRRFMAFLAL
EGLAEDPRFATNPARLEHRGALNDILIPALQRYRTDEVIAAMEAAKVPVGPVKTLDQVFETDQVAARDMV
VTMQAGDTEVRLLGNPLKFSRTPVTYRKAPPRCGADSTEILASDAPFETD
>gi|99081373|ref|YP_613527.1| hypothetical protein TM1040_1532 [Ruegeria sp. TM1040]
MTQDIFGQECSLTDPRALAEWNGAQTGVLAHAARTAGHLGAVLDAAPDFALGQAIKGLSLLMLGRSELLP
TAREALAIAKSTYEGALPRERKYVDALEAWLSGHPSRAITCMEDILTRHPCDTLAMKLSHGIRFIMGDAR
GMRASIERVLPAYSTEHAGHGYLLGCHAFALEETGDFDRAEITGRQALWTAPDDAWGLHAVAHVHDMTGN
ARTGLGWLEGREEAWAHCNNFRYHVWWHKALMHLDLGQIDEVMRLYDDEVRKDKTDDYRDISNATSLLMR
LELDGVNVGDRWDELAELCENRTEDGSLIFADLHYLLALIGGDRATATGQLIRRIHADGTQPKTEAAQRM
ADPGCAVSKGLEAFGEGHYGTAFDYLAKSRDSLQLAGGSHAQRDVFERMTIDAGLRSGNWAQVEAILDDR
RAKRGGGEDNYAMARRALIAAAQSEGGAQSVPAE
>gi|99081374|ref|YP_613528.1| hypothetical protein TM1040_1533 [Ruegeria sp. TM1040]
MADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMFIILCAHIPGN
RWTGWIPARFGFSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYRCWQVFWAHIGLFFFVAMSMA
ALDLYGGFEKSYIGSLNLRPFFNDPAEQIVGIFTLTYVPNYFDILPMYLVVLALMPAIMSAQKLGLWAVA
GLSLALWLLANPYVVGLGPEGLSLPAEPWSDREWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAA
AFLILSMPFGSWKVFSWLNSAAPDLGATIRPAWGITGEWREKTDFGLLRYLHFLSLAYLAWLVAGENGQN
LVARGSSLAARFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTERGILVTALANITGFTLIIGCA
FAAGWFKSQPWRRKR
>gi|99081375|ref|YP_613529.1| glucan biosynthesis protein G [Ruegeria sp. TM1040]
MSTFSRRSFLQFASALSLAALAPAARASASEEAFSRADVIARAKALAERPFKARSAVPDDWLALSYDQYR
SIQFDLDKALWAGSDRSYNVDFFLPGLYFERPVLVHEVEDGMAHRIPFDLGHFKKHPEISPDLSTEGPLG
YSGFRLRTDLGDRDHPGKKTEFCVFQGASYFRAIANGNNYGLSARGLALKTADPEGEEFPEFVSFWLEAP
GPLQENMVVHALMDSPSVTGAYRFDITPGTPCVMDVEATLFARKDLTHAGLAPLTSMFLFDGTNHQRFDD
FRPAVHDSDGLLMKNGNGEVIWRPLANPTRLQVSSFVDKNPAGFGLMQRARKLSDFADLEAHYHRRPSLW
VEPREDWGAGSVTLVEIPADKEIYDNIVAYWRPEKPYPAGARVDLNYRLSWGEEPVLDLPRVINTASGAK
IFGDPGRLMVIDFEAHPVFEADPEAFSLHISSPHLETSDGVLQRNPETGGMRLAFSFDPGEQTHVELRAQ
LRKDGQDASEVWLYRWTV
>gi|99081376|ref|YP_613530.1| glucosyltransferase MdoH [Ruegeria sp. TM1040]
MKDIGFTDTSALLLPPEAPLAMPAQDFGRQFHDASAPAASARDGTGAALWRVLAFSPAMVATLALAWVMQ
GWFAADGTTSLEWVLLVLIAFNFFWITFTVSTVLLGLFSLSRTRPRPERGLRKPMRVALLVPIYNEVPWY
VLGNARSMLEELRAIGGPHRYEMFILSDTRDPEIAAQELQSIKALRADLPEGITLYYRRRAENTARKVGN
IHDWVTRWGGSYEAMLVLDADSLMTGRAIQRLTDALARDPAAGLIQSFPQLIGAQSVFGRMQQFANGVYG
LALAEGLARWTGHEGNYWGHNAIIRTRAFAASAGLPELRGFTGGSSLIMSHDFVEAGLLRRAGWRVRFLP
RIRGSYEETPATLVDHIQRDRRWCQGNLQHLRLLSATGFHAMSRFHLAHGAIGYLMAPVWFALLVIWAVI
GQDEGGSVITYFSEANPLRPNWPDMSEPRHVAVIVLIYAMLLAPKVLSVAALPLTGRRIADYGGLGRFLL
SMLTEILLAILYAPILMVQQMIAVLRSVFGLQKGWSPQARAGGEYSLATLCKCHLLETVSGIALCIGIAA
GLVSLWLLPIALSLVLAVPLSAMSGLRLPRGWMGTAETLNEPQINRAAHHYRNLLRQHAQGTDVPVQAAE
>gi|99081377|ref|YP_613531.1| putative polyhydroxybutyrate depolymerase [Ruegeria sp. TM1040]
MIPLLATIATLTLVEGAAACDTPETACRLDTGSYQIVLPDTPADQTPAIVFLHGHGGSAKNVMNLEQMVT
GFTARGYAVIAPNGARGAQGVRSWSFLPEFGGRDDFTFLQDVLKDAVKRFDVDPEHSVLAGFSSGAFMVN
YLACRDPDAFAAYLPVAGGFWRPQPKECEGPLRLYHSHGWADRVVPLEGRILGGGRFVQGDIWAGLELWR
DTLGCETHAPAEIWQDGDLSMRSWSCGDGAALTFELFPGGHRVPSGWAGRVVDWLEADPTDAQTGG
>gi|99081378|ref|YP_613532.1| rhodanese-like protein [Ruegeria sp. TM1040]
MAVINWIRKDLDMQMKQDHTRTPPSTRSSRRVFLLGGGALLLGAGGWWGLSRHRPTHEGRILSVAQAHKD
AQTGEILLLDIRTPSEWRQTGIPEGAVPLDMRRADFQEALRALQVQDPGRPVALICAGGVRSARLTRQLL
ASGFEDIIDVPEGVYGSTAGPGWLSSNLPVRPWTG
>gi|99081379|ref|YP_613533.1| putative monovalent cation/H+ antiporter subunit A [Ruegeria sp. TM1040]
MSLFLIAALPFLGALFPALLIRAGRNASASSAGLATGLAFIGLMLHAPAVMRGEVIHVGVDWLPALGLSA
NFFLDGLGFLFATLILGIGLLIIVYARFYLSRQDPMGQFYTYLLLFQGAMVGIVLSDNILLLLIFWELTS
LSSFLLIGYWKHLPEGRQGARMALTVTGMGGLAMIGGMLILGHIAGSYDISVILQNKDAIQSSDLYLPAL
ILILIGAFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGLFLMARLWPVLSGTPEWFYIVATTGLI
TMVLGAVIALFKDDLKALLAFSTVSHLGLITMLLGFGTKYAAVAAVFHIINHATFKAALFMSAGIVDHEA
HTRDIKRLGGLRHLMPVTFVIATIASLSMAGIPPLNGFLSKEMMLDAAEKTSWLSSPYMIAGLATFAAMF
SAAYSFRYIAHVFLGPKREDYPAKPHDPGFGMYASPALLVVLVVLIGLFSAKLVGPLVAASASAVIGGEK
LPYYSLKLWHGFTPALYMSVVAVLGGLVLLSLHRPLERVWNALPRPEAKVIFDAIVSALTGLVQGLTGRL
HDGSLTRYAAIMLSFTVAISLYAYVTGTMGLPTRPMQEAGVMPMVAWFCLAMAALCIVVFHRQRFVALIL
IGIVGLIVSMSFNYLSAPDLALTQISVEVVTIILMLLALNFLPKETPVETPLFTRMRDGAIAIIGGLGVG
GLIYAMLVRDFAFPAISGFHIENSYKGGGGTNMVNVILVDFRGFDTFGEIIVLGIAALVIFALTEAVLST
RVRAYLLNRKPDLEQAGDSHPGMMVVVTRMMMPVALMVAAYIFFRGHNLPGGGFIAGLVAAIAVIMQYMA
SGFGWATERQRYPYHGIIGSGVLIAAATGLGAWFNDQPFLTSAFGYVHIEPLNEFEVATAALFDLGVFLA
VVGAVMLALESLARFAWQPGTDSEHAIEINPARDAAAQDMKEV
>gi|99081380|ref|YP_613534.1| putative monovalent cation/H+ antiporter subunit C [Ruegeria sp. TM1040]
MELLVASAVGLLTAAGIYLILRRRTFPVILGTSLLSYAVNVFLFATGRLATDAPPILNKYAEVAYADPLP
QALVLTAIVISFGMTAVVVMVALAAYLSARDDNINMDDTAPAQGEDA
>gi|99081381|ref|YP_613535.1| putative monovalent cation/H+ antiporter subunit D [Ruegeria sp. TM1040]
MNHLLIAPIVLPALVAPFIIMTLRYHIDLQRIFSLTTNVLLVAIAMALAVQAADGTVQVYELGDWQAPFG
IVLVLDRLSAMMVLLTTVLALAVNLYAIGSKWDERGANFHALYLFQLMGVIGAFLTGDAFNLFVFFEVLL
IASYGLMIHGGGARRFQAGVQYVVFNLLGSTLFLFALGTIYGVTGTLNLADLAQRVAELPAEDSALIRVG
AVMLLLVFAIKASLLPLHFWLPASYANAPAPVAALFAIMTKVGAYAILRVYTLVFGPDVAVVDGLVESWL
LPAALLTIAIGAIGVLGSKEIGKLMSFGAITSVGTLLTAIALFTPEATSAALYYTVHSTLAAAALFLVAD
MVRERQGGDIAPKPVMAQSGLISVLFFVAAIATAGMPPLSGFLGKLLILDAARDNTLAVWVWGVILVSSL
VTIMGFARAGTLIFWKSHGLPSEQPAEEDASESATTTTERTSALPFVACFSLLAGLVALTLFAGPVTRYT
TATAADLFAPEAYIETVLANRDRPVVEPDADGTDKAKDDGAAAPKSEESN
>gi|99081382|ref|YP_613536.1| putative monovalent cation/H+ antiporter subunit E [Ruegeria sp. TM1040]
MKLLNRLLPHPLLTLMLTVIWQLLVNKVTPNSLLFGFFLGLLIPFVTQPYWPNRPKLKSPLRLATYVLLV
FWDIVMANITVARIILFMPNSKRQPTWVSIPLEIRAPEAIAMLGGTITMTPGTLTADISSDGRYLLVHCL
HAPNPDEVRDEIKTRYERRLKEIFE
>gi|99081383|ref|YP_613537.1| putative monovalent cation/H+ antiporter subunit F [Ruegeria sp. TM1040]
MIEYAYIFAFGCFALAMLMNLWKVVTGTEVTDRILALDTMFINSIALVVLFGVFLSSEIFFEASLIMAML
GFISTVAYARFLLRGNIIE
>gi|99081384|ref|YP_613538.1| putative monovalent cation/H+ antiporter subunit G [Ruegeria sp. TM1040]
MIAEILITAFIALGGIFGFVGSFGLLKLNDPMSRMHAPTKATTLGVGGVLLGSMLHAIVVEGRISAHELL
ITLFLLITAPVTANFLAKVFINQQTQPKDLPVPGDCKLWATHNKPEHHTASSPDA
>gi|99081385|ref|YP_613539.1| AIR synthase related protein-like [Ruegeria sp. TM1040]
MHAPRLPLTRDLVLVGGGHTHALLLRMWGMKPLPGVRLTLINPGPTAPYSGMLPGFVAGHYTRDALDIDL
VKLARFAGARLILGAAEEIDPISKRITVPGRPAIAYDVASIDIGITSAMPELVGFDDFAIPAKPLGRFAT
RWDAFRNGSDPARIACIGGGVAGVELILAMAHALRQQQRLAQATLIDSGSVLSVLTSQSQTRLRKALDAN
GVRILQQTRIDHLSAGRIHLEGGRVIDSDFTVGAAGARAYGWLETSGLQQHEGALVISETLQTSDPDVFA
CGDCAHMAYAPRPKAGVYAVRQAPVLYHNLKAVLGGGSLKSYQPQKDYLKLISMGDKSALADRDGRSFAG
GLLWRWKDHIDRKFMGKFSALPQMPAPALPRSRAKGMEAVLGSKPMCGGCGSKVGRHALHAGLGAFSGAQ
RADVTPLPGDDAAQLMTGSATQVISTDHLRAFTEDPVVMTAIAAQHALNDIWAMGAHPQAATVTLILPRQ
SADLQERLLAEIMHSAHQEMTAAGAAIVGGHTSLGEELTIGFTLTGLCETPPLTLAGAQAGDHLILTKPI
GSGTLMAAEMSGTAPGACVAEALDLMCQSQRDAATVLRPVAHAMTDVTGFGLLGHLQGLCAASDLGAEVD
FDAIPLMAGAAALAEAGVRSTIFEDNAALLPGIGTAGARALLFDPQTSGGLLASVDPARASDALRELKNH
GYHAAKIGEIRDADQGIVIR
>gi|99081386|ref|YP_613540.1| tRNA 2-selenouridine synthase [Ruegeria sp. TM1040]
MFQTLSDFLAHGHDTVIDVRSPAEYAEDHVPGAINLPVLDNAERADVGTIYVQQSPFLARKIGAAMVFRN
AADHIEHRLSHHEGSWKPLVYCWRGGQRSGSFTWMLSQIGWRAEVVKGGYQSYRRLVHQAMYEAPLAHRL
MLLDGLTGTAKTEILKQVAEMGGQVLDLEGFAGHRGSLLGEMPGGQPSQKRFESYIACALAQMDPARPVL
VEAEASKIGARILPPSLWDAMKAAPRIDLEVPFAARCAYLLEAYDDILSNAETLREKLGLLREHRSGAVV
DAWFELIAAGDKPALVARLMADHYDPAYRKARSRYEVSDQRKVALTGLDEAARKQAAQRILELLDAS
>gi|99081387|ref|YP_613541.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MQRTTPMSDLELEIDTQPATLIRRLNQIAVARFTSTMSAAQLDLTPVQYAALSALEAHPGVDQATLATHV
GYDRATLGKVVERLEAKTLLIREVDPRDRRARCLRITQNGAQLLSKVHPLVEALQPRILDGLTAAERKEL
IRLLEKATRAQFSVSRETEQA
>gi|99081388|ref|YP_613542.1| hypothetical protein TM1040_1547 [Ruegeria sp. TM1040]
MDHPLIDLINARIEAAEKDGAFDNLEGAGRPLPPCDDPENAVMNRILKDNGAVPEVVALSRELARLREEL
RETGDRSRRRQIIADLSMTEARLELARKRG
>gi|99081389|ref|YP_613543.1| 5'-nucleotidase-like [Ruegeria sp. TM1040]
MISRFLTSAAALGLTAGMAAAEYKLTILHTNDIHSRIESISKYDSTCGADDEAEGKCFGGIARVKTMVDT
KRAELDGQNVLLLDAGDPFQGSLFYTTYKGAAEAEFMEDIGYDVMAVGNHEFDDGPAGLQQFVDTVSFPV
ISGNLDLSSEPLLKGKVGNHVVLEVGGEKIGIISALATDTVETSSPGPNVVFQDEIDSLIADVEALQAEG
VNKIIALTHVGLAKDMEIAAKVPGVDLVVGGHSHTLLSNTSDRAAGAYPTMVGDVPVVQAYAYTKYLGEL
TVTFDDEGNVISAAGEPILLDASVTPDADMVARIKEMGAPIDEMKTRVVAETTDAVEGSRDVCRAGECAM
GNLVADAMLARVKDQGVSIAIQNGGGLRASIDAGEVTMGEVLSVLPFQNTLSTFEVSGQTMIEALENGVG
QIEDGAGRFPQVAGLKYAFDASKEPGARISDVMVMEGETWVAIDPAKTYGVVSNNYVRNGGDGYKMFAGD
DKNAYDFGPDLADVVAEYLAEVGPYSAYTDGRITKK
>gi|99081390|ref|YP_613544.1| hypothetical protein TM1040_1549 [Ruegeria sp. TM1040]
MLIYKIFRDDEWRAFEAAGETDGAPVDLADGYIHFSTAAQATETAAKHFAGAEGLWLLAFEADQMGDALK
WEPSRGGALFPHLYRRLTLSEMLWAKPLPLVEGTHRFPQEMV
>gi|99081391|ref|YP_613545.1| dihydroorotate dehydrogenase 2 [Ruegeria sp. TM1040]
MKLSEKLALGLMHRLDPETAHGLSIKALRAGLTPRPGPVTSPRLRTDVAGLSLPNPVGLAAGFDKNAEAL
APLSEAGFGFIEVGAATPRPQPGNPKPRLFRLSEDRAAINRFGFNNEGMDTIGKRLAQRPKSGVIGLNLG
ANKDSEDRAQDFARVLSHCGAHLDFATVNVSSPNTEKLRDLQGKDALASLLAGVIDAREALQRPIPVFLK
IAPDLDISGLDDIAEVARDSGIDAVIATNTTLSRDGLKSTHRDEMGGLSGAPLFERSTRVLAQLSQRLDG
AVPIIGVGGISTAEGAYAKIRAGASAVQLYTALVYGGLSLASEVASGLDALLARDGFSNVAEAVGTGRAD
WL
>gi|99081392|ref|YP_613546.1| MATE efflux family protein [Ruegeria sp. TM1040]
MSEASGPITHSRVLKIALPIVLSNATVPILGAVDTGVVGQLGEAAPIGAVGVGTVILSTIYWVFGFLRMG
TTGLASQARGAGDLAETGALLMRGLLLAFGAGAFFIVAQALVFWGAFTIAPASAEVEELARRYLEIRIWG
APATIGLYAVTGWLIAIERTRAVFLLQIWMNGLNILLDLWFVLGLDWGVEGVAIATLIAECSGLVLGLWY
CRSAFAGDQWHDWGRIFDRARLKRMVQVNGDIMVRSVLLTLSFTTFLFLSADMGDVRLASNQVLIQFLHI
TAFALDGFAFSAEALVGGAVGARDRGRLRRAALVSSYWGIGFAVALGVGFWLWGPWIVDLMTTAPDVRET
ARAYLIWLAFAPLLSVASYMFDGIFIGATWTRDMRIAALQSVAVYGVALAICVPMFGNHGLWMALMVLNV
TRALTLALRYPRLEAGITAP
>gi|99081393|ref|YP_613547.1| hypothetical protein TM1040_1552 [Ruegeria sp. TM1040]
MSRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPMLPAIHGGATAA
FLEVTSVITLQWFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRSGLPRDSYARATVNRSGRRYA
SVHVAAWQDHKEKLFAQATGHFLMPQERPSGN
>gi|99081394|ref|YP_613548.1| phenylacetic acid degradation-related protein [Ruegeria sp. TM1040]
MAEKTQLARQFIEAIPHSKALGMELTEIGDGRAVIVMPYDKKLVGDPETGVIHGGAVSALMDTCCGAAVM
SHPSQPSSTATIDLRIDYMRGATPGQTITTTATCHHVTRNVAFVRAVATDDETEVPVATASGAFTLEPKR
>gi|99081395|ref|YP_613549.1| MerR family transcriptional regulator [Ruegeria sp. TM1040]
MTETKLSFKEMCAEFDVTPRTLRYYEYIELLQPERQGRSRFYGARDVARMKLILRGRKFGFQLEEIRQWL
LIYDKEGDEAQNRAFIEMADRQLKELELQRQQINEAMDELTDLRKVTLGLLK
>gi|99081396|ref|YP_613550.1| hypothetical protein TM1040_1555 [Ruegeria sp. TM1040]
MHPPRVAAQGTTMDIHDCIGETSFYPQLLFWSGGLISGIFVKLKEDLTVAQMCAVLVGRRKISSNKLQWA
LLVLTLLPPLALRLYLIDRCLS
>gi|99081397|ref|YP_613551.1| MerR family transcriptional regulator [Ruegeria sp. TM1040]
MSEDTKSIREMCDEFGVTPRTLRFYEAKELLFPIRDGQKRLFTKRDRARLKLILRGKRFGFSLEEIRQLL
DLYHMGDQQLTQLSRTYEIAQERLADMERQRDELTEAIDDLKDQLKWGEKVIASMKTSAKAAE
>gi|99081398|ref|YP_613552.1| acyl-CoA dehydrogenase-like [Ruegeria sp. TM1040]
MPSYTAPTKDTQFVLHDVLNIKDAGIPGYDELEPDFTGAVLEEAGKIARDVLHPLNVVGDTEGCRLENGV
VYTPTGFKAAFEQVKEGGWPGLDMPEQYGGQNMPYVIGTAVGEFFSGANQAFTMYQGLTHGAASAILAHG
TDAQKDTYLPKMVSCEWTGTMNLTEPHCGTDLGLMRTKAEPQDDGSYLVTGQKIFISAGDHDMSENVIHL
VLAKIPGGPDGIKGVSLFIVPKFIVNEDGTPGERNGVSVGKIEEKMGIHGNSTCVMNYDGAKGWLLGDMH
KGMRAMFTMMNEARLGVGMQGLAQAEAAYQNAVEYAKDRLQGRDVTGAKNPDGPADPLIVHPDIRRNLMD
QKSFAEGARAFILWGATMIDKAHRSGDKDADGLISLLTPVIKGFLTDKGYDMTVQAQQVYGGHGYIEEWG
MSQYTRDARIAMIYEGANGVQALDLVGRKLAQDGGKHVMAFFDMVKGFCKENAEISDAYAKDFIEPLKAA
SKDLQAAGMYFMQNGMKNPNNALAGSTDFMHMFGHVCLGLMWAMMGKAAQKALDEGASDAAFYETKLATG
RYYMARQLPATKLHLARIETGADTVMALDAAQF
>gi|99081399|ref|YP_613553.1| hypothetical protein TM1040_1558 [Ruegeria sp. TM1040]
MPKRFRLTRRFPVAMTEDGFRRLKRFAQEAGLDEGEALSFLFENFDSVTNHENLTHRLRLFNAELEDRKR
>gi|99081400|ref|YP_613554.1| acyl-CoA dehydrogenase-like [Ruegeria sp. TM1040]
MSAELDFRTSSVWMTDEHKMLADMTQSFITNEWAPKFERWRKQGEMDRSTWAQAGELGLLCPSIPEEYGG
AGGDFGHEAAILIEASRANLASWGHGIHSGIVAHYILSYGTEEQKQRWLPKMVSGELVGALAMTEPCTGS
DVQAIKTKAIRDGNVYRLSGQKTFITNGQHANLILVAAKTDPSQGAKGISLVALETEGAEGFSRGRNLEK
VGLHAADTSELFFDNIAVPPENILGATEAQGFYQMMQQLPQERLIIACGAVGAMQGAVERTIAYCKEREA
FGGPLTQFQNTRFKLAECLTKSKVARAFLDDCMVQHLRGELTVEKAAMAKYWITDAQGAVLDECLQLHGG
YGFMQEYAVAEMWTDARVQRIYGGTNEIMKELIARSL
>gi|99081401|ref|YP_613555.1| glutathione S-transferase-like [Ruegeria sp. TM1040]
MKLYCFGESGHSYKVALALELAGLDWEPVFVDFFNGITRGAEFREGVNEMGECPVLVDGETTLTQSGVIQ
QYLSDTYGKFGGSTPEEKREILRWQLWDNHKLSSNAGLCRFLMNFMPEDKRPAEVIAFLQGRLKAAYAVL
DKHLEGRDWIVGESLTNADLTCCGYLYYPEPFGFDRKDYPNIDAWLSRLSALPGWKHPYDLMPGNPSDRA
>gi|99081402|ref|YP_613556.1| acetyl-CoA acetyltransferase [Ruegeria sp. TM1040]
MTEAYIYDAVRTPRGKGRKDGALHEVTSVRLSALTLNALKERNNLEGHAVEDVIWGNVTQVMEQGGCLAR
SAVLASDLDQSIPGLAINRFCASGMEAVNLAANQVKGGAGDGYIAGGVEMMGRVAMGSDGAAIAVDPSLA
MDTYFVPQGISADIIATEYGFTRDQADALAVESQRRAKAAWDDNRFAKSIITVRDQNGLAILDHDEYMRP
GTDMQALGSLNASFQMMGEVMPGFDAVAKLKYPHLEKVNHIHHAGNSSGIVDGSAALLIGNKEFGERHGL
KPRARIKATAKIGTDPTIMLTGPVPVTEKILKDTGMTISDLDLFEVNEAFASVVLRFQQAFDVDPALVNV
NGGSIAMGHPLGATGAIIIGTLLDELERQDKECGLATLCIASGMGAATIIERV
>gi|99081403|ref|YP_613557.1| 3-hydroxyacyl-CoA dehydrogenase [Ruegeria sp. TM1040]
MTDFKYDVDADGIAIITWDAEGKSMNVLTREAFGLVEDYIDRALGDDAVKGVVITSGKKDFAGGMDLNVL
ATIREESGENPAQGLFDFTMNGHRILRKLERAGMDAKNNKGGKPIACAINGTCAGIGTEIALACHYRTMT
DNPKAKIGLPEILLGIFPGGGGTIRYSRMVGAVNAAPVLLEGKMMDPKKAKSASLVDEVAADPLEAARQW
VLNAKDADIVKPWDQKGYKMPGGAPYHPAGFMNFVGASAMVHGKTQGAFPAAKALLSAVYEGALVDFDTA
LRIEARWFTHVLMNPSSSAMIRSLFLNKQALEKGAVRPKGIEDQSVKKIGVLGAGMMGAGIALVSAQAGM
EVVLIDRDQDAADKGKAYSATYMDKGIKRGKATPEKKEALLAQITATADLDALKGCDLIIEAVFEDPGVK
AEMTKKVEAIIPEDCIFASNTSTLPITSLAEASVRPEQFIGIHFFSPVEKMFLVEIIKGEKTGDRAVAKA
LDYVRQIRKTPIVVNDARFFYCNRCIIPYINEGARMITEGVSPVLIDNAARQLGFPVGPIQLTDETSIDL
GAKIARATKAAMGDAYPESPADDLIFWMEDQGRLGRKANAGFFDYDDKGKRVEYWKGLAEKYPLAEVQPD
LVEVQERLMFAQVLEAVRALEENVLMDIREGDVGAVLAWGFAPWSGGPLSWLDIIGTPYAAERCDQLAEA
YGDRFACPPLLREMAEKGQTFYGRFAPEEDQAA
>gi|99081404|ref|YP_613558.1| hypothetical protein TM1040_1563 [Ruegeria sp. TM1040]
MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDHGMRPIKSITR
RTLVLGDTACAQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLGDPFAVVPACALEGYRGIARA
PQQVTMQTVVLTFDEDEVLYIEAGVLAYCPADHDLMHYCVTAASEELYTILSAAEARELVIDMITEDSFW
TQGAVAGSGGTGEPQYTTFA
>gi|99081405|ref|YP_613559.1| hypothetical protein TM1040_1564 [Ruegeria sp. TM1040]
MILSRGRNYVFIHIPKTGGTALALALESRAMAGDEMLGDTPKAVKRRRRLHGTETRGRLWKHSTLADIEG
LASREELRQMFAFTLVRNPFDRVVSLYHWLKEQSFDHPMVPLAHSLPFTSFVTDPLVMRALKSQPALSYM
MQSDGYEHCSLYIRLEYFAKDAAPLFDHLGFALELPRVNESRRDPDWRVYYDSQAVDAVRTCCQLEIERF
EYSFNDYPLSL
>gi|99081406|ref|YP_613560.1| AMP-dependent synthetase and ligase [Ruegeria sp. TM1040]
MGWLADETGLERRAANYVALTPLSHLQRAAHVFADEPALVYGQTRRSYAQYHDRCTRLASALAGMGVAPG
DVVATLLPNIPAQAEAHFGVPACGAVLNTINIRLDVDTVAYIFDHGQAKVVLVDSEFLPLAEAAKERLQG
AGPTLIEVPDTEAGHAASGRYTTYEDLIAHGATDFDWIMPEDEWESLALNYTSGTTGRPKGVVYHHRGAY
LMTMGTVVSWRLQLRPVYLTIVPLFHCNGWNHTWMMPVLGGTVVCCRNTTAEAIYNAIADEGVTHFGGAP
IVLNMIVNAKDTERRAFDHTVEVFTAGAPPAPATLEKIERLGFHVTQVYGLTETYGHVTECLWKGDSWDE
LDQQGRAAIKARQGVAFPMMDHITVMDADMQQVPMNGSDQGEIVMRGNSVMKGYLKNPEATEEAFAGGYF
HSGDIAIQHPDGYIQIADRAKDIIISGGENISSVEVEGVLMGHPDVNLAAVVAKPDEKWGEVPCAFVELK
EGADVDEASLIAFARQTLAGFKTPKAVVFCELPKTSTGKIQKFELRKSFAGGS
>gi|99081407|ref|YP_613561.1| hypothetical protein TM1040_1566 [Ruegeria sp. TM1040]
MHTKTMSGSNWFTARKGYTLFKRLFGKRQFQYKCNACGELHQGSPSFSFRFPTYYFDVPEGDRKDRTFAS
DDLCHIKPAKGDDQGDEIFCIRVVLEIPIQGTDAVVTWGVWVTQSKDSFEKYVETFGQDQSSLGSFGWLP
VYMPFYNLSDAGAPLEHLECDIQWSAKGQRPKAYLWDSSHPLSIDQREGISWRKAIKIANLANHACSRKD
QVA
>gi|99081408|ref|YP_613562.1| hypothetical protein TM1040_1567 [Ruegeria sp. TM1040]
MLNATNNNRSRHFRSMTVLREFQRLEAVGIWRASPAEQRRDVIVSLGDATLTITDMQDRPLAHWSLAAIE
RANPGAFPALYHPDGDPGETLELAEDEVTMRDAIEKVQTAIDRARPHPGRLRLFGGVTIVVCAVALLALG
LPKTMRNQTLAAVSDVHRKAIGQALLGRIERVSGQACSTPEAEPILKKLADRTDVRRVVVLRSGIAESLT
LPGGIVLINRSFVEDFEDPAVAAGAVLVEHVRADERDPMAEILDIGGVTATFRLLTTGEIKRDTLDRYSE
TMLSSPRPGVDTEALLAEFARAAIPSTPYAYARDVTGESTIGLIEADPMAGRELAPVLNDRDWVQLQNIC
G
>gi|99081409|ref|YP_613563.1| sporulation related [Ruegeria sp. TM1040]
MKITTITAVSLILASGLATGVSAQLSSKTAQPAEFPPASYQGRQYVDSRGCIFIRAGVDGNVTWIPRVNR
ARQQLCGAEPSNIAGSTRQQPQTQDPRPDIITLTPDEDRVDEAAPVRLTTPTPARTRSIVPPPAVKPERR
AEVPTPDARATSLAPARPIRAAAPQPVAAAPAPAAPVVAPAPRRPLRNAGDPLDQITPNTRILPVHVYLM
RRQSEGLQVPEGYRPAWDDDRLNIRRVEQTIRPTVINQLPAVPEGYELADRADNRMNIQRGQRSPQGDAQ
MAQVWSDTLPRRLLEQPLDKTPFVLRDAKARYGYLEPRQGTGVATRLSSRAAPDATLPEAVPSKPRYVRA
VTLASEEEARRIARELSAATGLQMRLGTLTRNGQTLKVVLAGPFTAGADRALQRIRSAGFSGARLSK
>gi|99081410|ref|YP_613564.1| uracil phosphoribosyltransferase [Ruegeria sp. TM1040]
MSDHLTVVDHPLVQHKLTIMRDKATSTYEFRQLLRELTQLLAYEVTRELPLTTTTIETPMEEMEAPILAG
KKLALVSILRAGNGMLDGVLELVPSARVGFVGMYRDEETLEPVQYYFKVPQQISDRMVIAVDPMLATGNS
SVAAVDLLKKAGANNIRFLCLLASPEGVARMKEAHPDVKIITASLDRGLNEKGYIMPGLGDAGDRMFGTK
>gi|99081411|ref|YP_613565.1| phosphopentomutase [Ruegeria sp. TM1040]
MARAFLVVLDSVGIGGAPDAGAYYNKDLPDLGANTVAHIAQACAEKRAEEGRRGGLHLPTLDAMGLGAAV
RLASGQPAPGLDAVPAGLWGAAVEVSAGKDTPSGHWELAGLPVPWDWGYFPEEGAAFDADLVAHVAQAAG
VSGILGNCHASGTSIIAELGAEHLRTGLPICYTSADSVFQIAAHEEHFGLERLLKLCADIAPYLHARRVG
RVIARPFVGSPDAGFERTTNRRDYAIKPPAPILTDWVQAAGGRVHAIGKIGDIFSMQGIDTLEKGSDQAL
MRHLANAVQSAEDGSLTFANFVEFDSLYGHRRDVAGYARALEWFDREITGILAQLRPGDLMVLTADHGND
PSWPGTDHTREQVPVLVAGAGSGCIGTVGFVDIAASVAAHLGVPSEGPGRSFLP
>gi|99081412|ref|YP_613566.1| thymidine phosphorylase [Ruegeria sp. TM1040]
MDARAVIARLRQKHTPSTEELRWFAEGLASGAVSDAQAGAFAMAICLNGLPAAARSDLTLAMRDSGDVLT
WDLPGPVVDKHSTGGVGDCVSLLLAPALAECGAYVPMISGRGLGHTGGTLDKLEAIPGLSTEVTQDRLAG
IVADVGCAIVGATARIAPADKRLYAVRDVTATVESLDLITASILSKKLAASPEALVLDVKIGSGAFMKTV
EEARALATSLVETSKAAGCPTQALITDMNQPLVPALGNALEVAEVVRALTGQSSGQIIEITVALGGALLQ
QAGLAPNQEAGETQIAAAIAEGRAAERFARMIAAQGGPSTELETWARALPQAPVCAEVTAEDAGYVAAID
GEALGLLVVRLGGGRMVESDRIDPAVGISDLLHLGAKVARGDVIARVHAAHAEAAQDAISALRAAVRLAP
AAPDLPPLLHERIS
>gi|99081413|ref|YP_613567.1| cytidine deaminase [Ruegeria sp. TM1040]
MPQGPRPHALAQDRQPRPPARTEIIMPASDTDTIHPLRAAAATVRQNAHAPYSNFKVGAAIRAKSGTVYV
GCNVENVAYPEGTCAEAGAIAAMVAAGETELLEAYVIADCPSPVPPCGGCRQKLKEFGAAEVAVTLATTD
GVEMQTTIGDLLPGAFDAGHMERS
>gi|99081414|ref|YP_613568.1| malic enzyme [Ruegeria sp. TM1040]
MPDKTSESLRDAALRYHEFPRPGKLEIRATKPLATGNDLARAYSPGVAEACLEIKDDEANAARYTARGNL
VAVVSNGSAVLGLGNIGALASKPVMEGKAVLFKNFANIDCFDIELNESDPEKLADIVCALEPTFGAVNLE
DIKAPDCFIVEKLCRERMNIPVFHDDQHGTAIVVGAAAKNALHVAGKKFEDIKIVSTGGGAAGIACLNML
LKLGVKRENVWLCDIHGLVYEGREEDMNPHKAAFAQASEKRTLDEVIDGADLFLGLSGPNVLKPEMVTKM
AKRPIIFALANPTPEIMPDEARKVAPDAIIATGRSDFPNQVNNVLCFPFIFRGALDVGATEINDEMQIAC
VEGIAELARTTTSAEAAAAYKGEQLTFGADYLIPKPFDPRLVAVVSSAVARAAMSSGVAKRPIDDLGAYR
AKLNQSVFKSALLMKPVFEAARAAARRIVFAEGEDERVLRTAQEMLRETTETPILIGRPEVIEHRCQRLG
LSIRPGQDVQIVNPENDPRYRDYWTSYHRIMERRGVTPDLAKAILRTNTTAIGAIMVHRGEADSLICGTF
GEYRWHLNYVQQILGGGSYAPHGALSMMILDDGPMFIADTQVRIEPTPEEIAETVIGAARHVRRFGLKPQ
IALCSQSQFGNIQCDTGERLRAALAILDDKRRDFVYEGEMNIDTALDPELRERIFPNSRLEGAANVLVFA
HADAASGVRNILKMRSGGLEVGPILMGMGNRAHIVSPSITARGLLNMAAIAGTPVAHYG
>gi|99081415|ref|YP_613569.1| AMP-dependent synthetase and ligase [Ruegeria sp. TM1040]
MTYSEVYAQWKADPEGFWMEAAGAISWDKAPSKALSDLGGGLYEWFADSKVNTCYNAVDRHVEAGRGEQT
AIIYDSPVTHTKREISFVELRNRVATLAGALRAKGVEKGDRVIIYMPMIPEALEAMLACARIGAVHSVVF
GGFASSELAVRIDDATPKAIIAASCGIEPGRIVHYKPLLDGAIDMASHKPDFCVILQREQEVAELVEGRD
VNWHGFQYGVEPADCVPVEGNHPSYILYTSGTTGQPKGVIRHTAGQLVALNWSMKNIYNVDPGDVFWAAS
DVGWVVGHSYICYGPLIHGNTTVVFEGKPVGTPDAGTFWRVISEHKVKSFFTAPTAFRAVKREDPKGEFV
GKYDLSCLEQVYLAGERADPDTIIWAQDQLGVPVIDHWWQTETGWSIAANPLGIETLPVKLGSPAVPMPG
YDVQILDEGGHPVAPGELGAIAVKLPLPPGTLPTLWNAEERFKKSYLTTFPGYYETGDAGMMDEDGYLYI
MARTDDVINVAGHRLSTGAMEEVLAGHPDVAECAVIGVADQLKGQMPLGFLCLNSGCNRPHSEITAEVVK
LVREKIGPVAAFKLACVVDRLPKTRSGKILRGTMVSIADNTEWKMPATIDDPAILDEIKTALQSLGYAQG
>gi|99081416|ref|YP_613570.1| CsbD-like [Ruegeria sp. TM1040]
MNWDIIEGKWKQLKGEAQTQWGKLSEDEIDQAAGDRDKLAGLLQERYGLAREDAERQIDAFAESLKEKI
>gi|99081417|ref|YP_613571.1| hypothetical protein TM1040_1576 [Ruegeria sp. TM1040]
MNRLIAFSAVCAISVGSALPLQAESFVSVLQVIEEMGETPYECDGYDPATQSCSGLSYMRTEEGIIYNAS
WFAIENPAGEPWVFLASSEYEFLFGWGCPSNWGQAPTIRYVDGGDPDLGPQYAELIQSQLNESYDPDAPC
AGYYPDGPQRYRIEYRYRNGELAERPDSHVRFFFEPKELRP
>gi|99081418|ref|YP_613572.1| amidase [Ruegeria sp. TM1040]
MSNQELWRLSAEELSTQTRNGDISPTEAVTSVLARMDQVNPALNAVVEDLRDEALARAEVLDSTPKALRG
PLHGVPVTIKINIDQTGHPTSNGIPALKDLIAPDDAPVVQNLERAGAVVIGRSNTPEFSFRADTDNPLYG
RTHNPWGQHISPGGSSGGGGAAVMAGIGPLAHGNDIGGSLRFPAAANGAVTVKPGFGRVPAWNPSQKAER
GLLAQLMSVQGLMTRSARDLHLSMPAMIAPDIRDPFHAPVPWRGAAPDGPVKVAFTRNTHGYDLHPEVDA
ALLAARDALMDAGYIVEEIEPPNVFEAGRTGYRALMGEIHALMKPDLDAMGSEIIRTMFDTYFQEFPPFH
GDELLKMYAKRSHYARQWAMFMADYPLVLTPFLPHPFFAPDRDREGVAGAHDVLGCAVYSYAMNYMGLPA
ACVPARLAQLPKGLQPINVQIVAPRWREDMAVDAAIAIEDRIGQMAAPLWDHMQSMTR
>gi|99081419|ref|YP_613573.1| inorganic polyphosphate/ATP-NAD kinase [Ruegeria sp. TM1040]
MRIAFLASEAPLAQTALSVLSKRYGSVAVEAADVIVALGGDGFMLHTLRDTVDLNIPIYGMNRGTVGFLM
NSFGEDALLERLEAANEEIIHPLRMRAQDRAGVMHEAMAINEVSLLRQGPQAAKLKISVDGRQRMAELVC
DGALVSTPAGSTAYNFSAHGPILPIGADVLALTAIAAFRPRRWRGALLPSGATVRFDVIDAAKRPVMAEA
DSISFKEIDWVEIQSERRISHKILFDPGHGLEERLISEQFN
>gi|99081420|ref|YP_613574.1| serine hydroxymethyltransferase [Ruegeria sp. TM1040]
MTDATRDPGFFTQSLSERDPELFGAITDELGRQRDEIELIASENIVSAAVMEAQGSVLTNKYAEGYPGRR
YYGGCQYVDVAENLAIDRAKQLFNCEFANVQPNSGSQANQGVFQAILKPGDTILGMDLASGGHLTHGAAP
NQSGKWFNAVHYGVRESDCLIDYDQVQALATEHQPKLIIAGGSAIPRQIDFAKFREIADSVGAYLLVDMA
HFAGLVAAGEHPSPFPHADVATTTTHKTLRGPRGGMILTNNPDLAKKFNSAIFPGIQGGPLMHVIAGKAA
AFGEALKPEFKSYQKQVRANAVALADELIKGGLDIVTGGTDTHVMLVDLRPKGVTGNIVDKALGRAHITT
NKNGIPFDPEKPTVTSGIRLGTPAGTTRGFGEEEFREIARLIVEVVDGLAANGEDGNAAVEEAVRGKVAA
LCGRFPLYPNL
>gi|99081421|ref|YP_613575.1| hypothetical protein TM1040_1580 [Ruegeria sp. TM1040]
MCGRIGLPQLSWKDFVAWQRGEFDWLDVYREDRSEPLAPSWNVKPTQTVEALFLRQGALVAEHARWWLVP
SWFKGAPSDWRATTFNAKIETADTLPSFRGASRCAIPASGYFEWTGDKGQKQPWWITAQSNAPMLFFAGL
QTRLASGLRTCSILTRPALAQTAHLHPRSPVILAEGQLQDWLSGEIDRTRAKSELGTAWDGRLRYHQVPR
FGIEDDGPELIEAIGPEPLI
>gi|99081422|ref|YP_613576.1| hypothetical protein TM1040_1581 [Ruegeria sp. TM1040]
MSNMRNENALITNLNIAGVVIAYAMLGISLWLSTEVPLSTKGYWAMGILLLTLSLINVVKYRFDIRQSED
RIRRIEDIRNERMLEDALKDPASEV
>gi|99081423|ref|YP_613577.1| phage shock protein A, PspA [Ruegeria sp. TM1040]
MFTNGGWNVLSTLRTLMIGANRRAEGELRQQFSIELIEEKIAQANDDLKAAKSTLVSLIQKERAEGRQIA
TLDARIADLTQRAQAALADGREDLATTAAAAISEMENERRLRHETQTRLEARILRLRQSVETASRRLIDL
RQGAIAAKSVRGEHRAQAALGRSLDRQPMDEAAELIAEVLGQEDPFEASEILGEIEAGLAPQSVADQLAD
AGFGAATRSTPQDVLRRLKAAP
>gi|99081424|ref|YP_613578.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MTSKAEQRRAELREKLVGAAEARIREAGVTSLRARDLAKDAGCAVGAIYNAFDDLTALVMAVNGRTFQRL
GAEVEAAVKASEGASPSDRLIRMSEAYLDFASANNLLWRALFDLELPADGEVPDWYRAALDRLFQHIAGP
VAELFPDQPQQEQALTVRALFSSVHGIVLLGLENRISGVPPQEIRRMIALVLSRLTMK
>gi|99081425|ref|YP_613579.1| hypothetical protein TM1040_1584 [Ruegeria sp. TM1040]
MTEPAQNPIPMNRTRRLERALGDWCRARLPHYLSELVMFTLKQGWAAIFGILLLGGLLVSSRIWQADWAL
ARYDALLIYALGLQAVFLITGMESTREARVILLFHLTGTIMEIFKVQAGSWAYPGAGVLKLWGVPLFSGF
MYASVGSYMARVIRLFDMRFAPYPPTWMASCLAVLIYVNFFSHHFLPDIRLALFVATVVIFIRTRIWFYI
GGHAYWMPLPLAAFLSSFFLWVAENVGTRTRTWLYAGQDSDHWVSLAKMGSWYLLLYVSFVTVTLVVRDA
LSAEAFRPSGPSGIRRNPASAAQPPSAQ
>gi|99081426|ref|YP_613580.1| hypothetical protein TM1040_1585 [Ruegeria sp. TM1040]
MNETLQSELEQLRVLLEKRLRLSGPLSDSLRRARRHVPHRLRKAADDLLRAEERFDHPRLALTLDEDALV
KKARRLRAYLTELDLKDRRKGRLLDMAATSAFAILCVIVLMVVVLRWRGFV
>gi|99081427|ref|YP_613581.1| alpha/beta hydrolase fold [Ruegeria sp. TM1040]
MLNTIIHGTPTDQPPLLIAHGLYGSGRNWGVIAKRLADERQVIAVDMRNHGLSPKTQSHSYVDLAEDLAE
VIAAHGGRMDVVGHSMGGKAAMMLALRHPEAVNRLVVADIAPVSYQHTQAHFITAMRSVDLARVTRRSDA
QEQLAAAGVDAMLQSFFTQSLDVENKSWRLNLDTLEREMPHILSFPEVETHWDGTALFLTGAHSDYVLPE
HRPQIKRLFPAARFAKIPGAGHWLHAEKPREFEATVRGFLNA
>gi|99081428|ref|YP_613582.1| DNA adenine methylase Dam [Ruegeria sp. TM1040]
MAIEIPVPAVAPALPKPFKTQLLKWVGNKQRFAHEIVAHLPKDYGTYFEPFLGAGGVMANLQPHRALGSD
IYPPLVEIWQALREDPARLNAWYQSRYDRFMTGDRVATYEAIKARYNDTPNGADFLFLCRACYGGVVRFR
RKDGYMSTPCGSHPVMKPHKFAERVEMWRARMKGASFACLDYRSAMAQARAGDVIYCDPPYAHSQTILYG
AQAFRLEELFAAIAACKARGVRVALSIDGTKKSGDIYCDIAIPEGLFEREILVNMGQSMLKRFQMSGQRM
ESEAVRDRLLLTY
>gi|99081429|ref|YP_613583.1| Outer membrane autotransporter barrel [Ruegeria sp. TM1040]
MPAAAFSFDFGEYHFEYARLGSCDVDLRVDPHREEAFLFLLGVEFQAAGGAELWSGNWHPMPEVTAENLA
DCLGVPSSLVEVTRQEGPVFDSDSSESFRLTTYIGLTFDLQTDSMELAAGTYEFSTDTNGEIRYLGFTDR
IAPELTPPSDQSATTDAGQATASLNVTSLGSASDNADSSIDIAYAIGSTTITGSYDFPVGETTVTMSASD
AAGNDATPVTFKVVVSDEESPALTAPSNQEITTESGASTASLDVTDLGSVSDNVDSSLSITYYVGSAALS
GAYDFPLGDTTVTMMASDAAGNSAQDTFTVTVNPGDVTAPVLTAPSDQTAATAVGASTAALDVTSLGSGS
DNLDDVVTITYKVGDTVLDGAYDFPIGETTVTMDATDAAGNAAAPVSFTVTITPGDATAPVLTAPSDQTA
ATAVGASTAALDVTSLGSGSDNLDDVVTITYKVGDTVLDGAYDFPIGETTVTMDATDAAGNAAAQVSFTV
TITPGDATAPVLTAPSDQTAATAVGASTAALDVTSLGSGSDNLDDVVTIIYKVGDTVLDGAYDFPIGETT
VTMDATDAAGNAAAQVSFTVTITPGDATAPVLTAPSDQTASTEPDATSTSLDVTSLGSGSDDIDDSVTII
YKVGDTVLDGAYDFPIGETTVTMDATDVAGNDAVQVSFVVTVLDGTPPPEPTITDVVVNDDKTLTVTGTA
QAGATVTVTFPDGSTVETTASGAATSAKGRVNRDSTAVFAAATGTYTATSATPQTSGDVSAYSSTTGGGA
SASASVAVDATSPDVVLSGGPSDGISANESFTVTATFNEVVTGFSASDVVAQNASVTAVTGSGSDYTISL
RATGAGTVTVEVPAGAAEDAASNPTNASNTLVFDDTTVVETQKQIAGFLYNRANQLISNQPELIGFLSQT
GIGSGTLDAYVTRGAGNFNLASRGGLPVWFRLQGSWSEDDTTEARYAFGAVGGHLTLSDRLLVGAMLQFD
HLHQDQGSRRVEGTGWMVGPYAVAQISDQALYVEGRVLYGQSSNKVAPFGTYEDSFDTTRVLAQLRVAGD
IKKGDTIFTPYIDAAYANEEQDAYVDSLGNSIGAQKIHLRQASFGVGFATPLPIGAADQAVLTGGLAGVW
SSTSGTAVADTVLPSYAGWRAKLDLGLRYVWENGSKLALSARYDGLGSAGYKDVGLSLDYSLKF
>gi|99081430|ref|YP_613584.1| TRAP dicarboxylate transporter- DctM subunit [Ruegeria sp. TM1040]
MTPLIFAFKLLIAVPVALVLALTAIWYIWESGNTVLYDSFAQKMFSGLESYGLLAIPLFMLTGEMMNEGG
MTRRLINAARVFVGGFRGGLAYINLLTNMFMAAIIGSATAQIAVMARAMTPEMEKEGYDTGFAAATTAAG
GLLAPVIPPSMMFVIFGVLAQVPIGEMFLAGLIPGMMLAGAFALVIFGIGVATGFPKGSWFTAPEAFSAL
LYCLPAALIPCAIIGGVVFGIATPTESAAIASLLAFGMGWLVYGELKPAALFAMFRRTAINASMIIFMIA
CANVFGWVIIYEALPQKLAALITSITSDPFLFLLIVNLILLLIGMLVDGIAAVILISPILLPIAVNHYDI
SAHQFGVVMCLNLVLGLLTPPVGVGLYIASSMSGATPGQILRSLWPFLLAVALILVLLSRFPVLSTAFL
>gi|99081431|ref|YP_613585.1| tripartite ATP-independent periplasmic transporter DctQ [Ruegeria sp. TM1040]
MIGRISAAWARCELALAACLAVSITALILLNVVTRSLGAALFWVDELAIYAMAWMAFLGASAAVHFGHSV
AVTILTDTLPLALQKIAAQLVDGIVLGFALAMLWFCWRWFAPLALIQSGFDLAAFQGATFNFVYAEPTTT
LGLQKHWVWSVMWVFALGMTLHSFANLIGQGANPEDDRS
>gi|99081432|ref|YP_613586.1| TRAP dicarboxylate transporter- DctP subunit [Ruegeria sp. TM1040]
MNVIWKTITGAAFVLSSTVAPQAKEFRLGLITPPPHIWTKAAEAFGADIAKASDGAHSVTVFPARQLGNE
AEMLQQLQTGALDMAFMTVAEVSNRAPDFGALYAPYLAEDIAHAGRILRSETATSMLAQLPAKTGVVGTG
YGMAGLRQIVTRGEVNSVDDLAGLKLRITPFEPILDFYNAIGAAPTPMPLPSVYDALANGQVDAIDMDAE
LIWVLKYYEHADTVVQSNHMMFPMVGLVSARVWAGLSEADRALIGDLMARHVDSTIDTYVEKEQLWLDEI
KATGRTYKTVDAAFFGEAVESWNAVWSERSQMLGPLRAAAAATARD
>gi|99081433|ref|YP_613587.1| 3-hydroxyanthranilate 3,4-dioxygenase [Ruegeria sp. TM1040]
MPQHPTLKPFNFEKWVEQNADKLRPPVGNQLLHKEGDMIVMVVGGPNTRMDFHDDPVEEWFFQQKGDMML
KIADGGKIYDVPVREGEVFMLPPHVRHAPQRPQEGSVGIVVEAPRQPGMKEGFEWYCFECEGLVHREEVA
LDGPEGIVTALPKIYSKFHDSLEARTCPHCGALHPGKGKPPADWVQL
>gi|99081434|ref|YP_613588.1| hypothetical protein TM1040_1593 [Ruegeria sp. TM1040]
MIGEGLAILAALSYGGAAVSIVQSKPGAQADNGVFLSVLVLFGISGGIWLGSGVVPLSALWQPEGLCAIG
VFALAGLSANGLARWSMYRATERIGAVSATLLRRLTPIFVLPFAYLLLEQIPDVATLWGGCVILIGVWIY
LRPSTQPAAGGLSSGVMLGLLSPLAYAFAYSLRGLGLNGLPDPALGTFVGAGAAIIWSLARHGLHRSPER
GLRYLLTDRSPAHWRTALALSVGQLLQFFALKISAVATVALLGTLEVLFSAVFIWLIYGRESVDIKRLFA
ATLCALGGTALMILA
>gi|99081435|ref|YP_613589.1| dihydrodipicolinate synthetase [Ruegeria sp. TM1040]
MKYKKNEAKAYARETMRGIWAAALNPFDEALKLDEAGLRRNIRHWIDDLDIQGLFIAGKQGEFWSMSIEE
RKRNMTIAVEECGDKAGTIMSISDQSVDTVLDLGRHAQSCGADYVVVHAPMLSFCHDRDEVLYNYYKYLC
DRLDIGIAMWSHPDSGYLMAPETCARIAELPNIMAIKYSVPREMYARLTQMVGDKILVSTSAEDDWLDNI
EDLGWQLYLCSSPPYLLQTKADRRMHEYTELAFAGKFEAARKLRNSLEPVRNALRDTKPAGKPTAHGKYW
QELLGQTGGRVRHPMLELTEAEKAATSAAFEDCGLLR
>gi|99081436|ref|YP_613590.1| L-aspartate dehydrogenase [Ruegeria sp. TM1040]
MKIGIIGAGAIAQYVAQQLRLRGLGPHVILARSAPPPEAQEALDGVDYVQRVQNLPQDISVMVDCAGHGA
LVQHGAALLERGIALVTLSLGALADDALHADLERAARAGKTRLHLASGAIGALDCLRAAKVGGLADVVYV
GRKPPQAWRGSVAEHVLELDGLRSPATHFRGSAREAAIAYPKNANVAAAVALAGTGFDTTRVELIADPSA
RVNIHEIQAHGDFGSFHFRIEGNALPDNPRSSALAAMSAVAAIERACAAIIT
>gi|99081437|ref|YP_613591.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MATRHTRIVERALTRLKLRQLRLLVAVGQHGSIQNAARDLNISQPAATKMIQDLEVDFEVKLFERTNRGV
VPTVFGDSLIRHGKLIFAQVSNAAQELDDLNEGNSGRVVVGTLLAASPSLLPMAVERVLQDRPKVAIKIV
EGTHEVLMPGLLSGEIDMVVGRLPSHRHRENITQEKFFDERILAVAGPQHPLACESNLTFDDIRPHGWIL
PPIETTLRRQTDQFFIRQDQYMPQTAIESVSYLANRALLRSHDFIGLMPAHVAALDIENGLLKPLDWVVP
FGAGPVGVSFRGQQSLSPAGGALLAALHAAAAEIARLTPAS
>gi|99081438|ref|YP_613592.1| succinate semialdehyde dehydrogenase [Ruegeria sp. TM1040]
MPRARKSCPIATDTNEAEMRNYPDLKLFIGGTWRDTPETLSVVNPATEEELGRLPCARISDLEDALAAAQ
KGLEIWRNTPPRSRADLILRAARLLRDRQEEIAQSITAEHGKPLAQARLEVIRGAEFFEWDAAEAMRTYG
RVIPSAAGTKISVHHHPIGVVAAFSPWNFPMSQPARKIAGALASGCSLILKAAEETPAGAIHIVRAFQDA
GLPDGVLNLVFGRPAEISAYLIPQPCVRLVALTGSTAVGRQLTALAAQSDTRVLMELGGHAPVIVCEDTD
VQKAALSGAIRKMRNAGQVCTSPTRFFVHQDIFDEFATTFTQRAAATRVGNGMHDGIEMGPTANARRIPV
LTDLVNDALAQGATLCTGGTRVGERGYFFAPTVLTHVPDSARIMREEPFGPIAVLNTVRNLDEAIAQANA
VDYGLAGYAFTNRADYIARMIDEVEVGNFSINTLEASLPETPFGGVKSSGYGREGGTEGLESYLTTRNVW
QSSDIT
>gi|99081439|ref|YP_613593.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MINMLASVWALLAGVVLIMLGNGMHFTLMGLRGGVEGFSSAELSIVTSGYFLGFLSGARFTPLLIQRVGH
VRVFAALGSFISAALIAFTLWVEPWTWTLLRILIGFCMSGIYVVAESWLNNSTSNENRGKMLSAYMLAQT
LGIIGAQGLLTLGDAANAALFIGASILVSISFAPILLSIQPAPLVEVTKPGGLKDLFAASPLGTAGIFVL
GSIYASQSGMGAVFGSEIGLSANQIALFVAMLFGGALFMQVPIGWLSDRLDRRKVICGTAALGAAACGLG
WLAQSPPAWLGVDPLVPIMAAAFLAGGMTTPLYALLLAYTNDNVAAEDMPAISGGLVFTFGLGAIIGPIA
VGLAMNATGPFAFWMVLGAAFLMITLYALYRMSQSEATPVSETDAYVNLVPSATIVAVEDATTWAAENAD
VDPSEP
>gi|99081440|ref|YP_613594.1| hemolysin-type calcium-binding region [Ruegeria sp. TM1040]
MANAYLQSLHTSASLRQLLQLRPFEAPVSSEMGDSRIELEAENGTRLVLDGSFSSEDEGSWVIYALALYD
GADTLVSISDMALSYEDFFAANGRERLNMVFEGADEITSNLGSGLRMNFQAGDDVITLGFGDDVINGGRG
NDTVSAGAGNDTINGNAGRDQINGHDGDDVLTGGGGRDKLNGGVGNDVLSGNAGRDKLVGGTGNDTLSGG
ADDDVLRGGTGDDVLTGGAGADVFKFRANDHTNVITDFEVGVDHIEVLKGARGMRGVDFEQIGDDVAVYF
GNVTVIVQDTTVELMDDSDNFLF
>gi|99081441|ref|YP_613595.1| hypothetical protein TM1040_1600 [Ruegeria sp. TM1040]
MTAQSKYLGSSRPIFVSLAHPFTTPIGFICPTKHCIHWTASPPVGSADLTPSAAKYGVVICVKVSLDLSD
TATLTPNVKNNRHGLRSPRERTYVEHKSRKINASK
>gi|99081442|ref|YP_613596.1| hypothetical protein TM1040_1601 [Ruegeria sp. TM1040]
MDFFTRISDVVSCVLRPVSDQSENHFFEFSWLKKLGATDVATAIATVVIAVFTVAMFRLHKEQQKHDRAV
ARANYQFSLFEKRLEVYFEVQRFFYSAFEHRVPQMESIGALHKSSATGTFIFGEKVKAFLSDCVNKAMRH
HQLETRRTRNAGIDEEIVQRCMVEQAEIEDWLSGKGAPASLEQMFSEYLELPADLPRE
>gi|99081443|ref|YP_613597.1| hypothetical protein TM1040_1602 [Ruegeria sp. TM1040]
MTEFFANVGVVLSAIGQGLKEDPAKFQHLIGGGLAFFGVLLTVWTTGRRLREQLAHATQLDKARHERDLE
VKRRSLKGALSAELSVISGFLRDEDIQLRKWITPDWKTIEELRVEPDEAIDLELLVPEVKKTDTLNRPEA
PYRFSMPERDEIYSALVGELAVLSVEEIQTIIVAYDKFQSFKSWVKEHCDDQVEQTNVYIFSKGKDLCSL
QAQIEDAKTELDWYLSTLLDEITLKEPASSSASKWCSFVSPSYLVLLGASFLFGFWVNSSTVENEPTSTN
ETKSIKSK
>gi|99081444|ref|YP_613598.1| hypothetical protein TM1040_1603 [Ruegeria sp. TM1040]
MTGLIAFLMRMGFGGMVDKAISHLERRAELQNDREKLRSQTTVELAREAVKEAQIMADYNRAKLAFPWFW
LFAALFLVPLAAWWSAVILDSIFGFTWSVADLPTPQMQEWAGDMIRWLFYVGTGVGALKSLR
>gi|99081445|ref|YP_613599.1| hypothetical protein TM1040_1604 [Ruegeria sp. TM1040]
MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEEVKAIYRSQYW
DKVGGDELPGGLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTMEAVDRADVEGLIQSICQARFS
WLKKLRHWGTFGRGWTRRVMGESLGVQARDTGVIDRAVYLHRELAVIHAPSYREDGSGARAEDGERSLSA
TVKELITSGKGWTNGGALGGGAIALTQLQGPVAYALAAVLLIAAVTAALYFLRSQEAAA
>gi|99081446|ref|YP_613600.1| hypothetical protein TM1040_1605 [Ruegeria sp. TM1040]
MTWGKFIVGAWGAVLALSLMTSALPASWWFQAGEVRVADAASGECPEMQFDREINRPFKAAWTVTIMGRA
SYGWATYRTFQGANDYRPENQLPDKLDLCWWTWADPLLLPPGEYRVNTLWRIHPTQGRAREIRRTSNTFT
ISGG
>gi|99081447|ref|YP_613601.1| hypothetical protein TM1040_1606 [Ruegeria sp. TM1040]
MKDLLFAIEFWLAMAAAILLKLRASPQITLFGAITTTASAICCALVFTEPLMDWLELDGEVYTYAVCALI
ALTGEHIARQILSLGIEDAVRLLRGNKK
>gi|99081448|ref|YP_613602.1| hypothetical protein TM1040_1607 [Ruegeria sp. TM1040]
MTGIGRSNWYIRHGDGYFTTTELAWEIGAKGSGLFIYVPPGFAFDVSIPRWAGWIFDRHDPRYLKAAALH
DYALHRLGWGRVSAAAPFSEALRAAGVSRIRRLAMVLAVTIHKWR
>gi|99081449|ref|YP_613603.1| hypothetical protein TM1040_1608 [Ruegeria sp. TM1040]
MKYAIIENGVVVNIAKADAPLAYNWVGAGGARIGDLWDGQAFTPPAPPPPTTDDVNAERARRLVAGTTVT
VTGHGPVALSGRDEDTRNLQGLAFAAQLRLSQGDTTHQTTFRDAENADHVLTPAQVLEMWSLGSAWIEQV
YAASWALKDTQGGIPADYANDGYWPQ
>gi|99081450|ref|YP_613604.1| hypothetical protein TM1040_1609 [Ruegeria sp. TM1040]
MSDPTITPPPDAPSRQQPSTFSARGDAFFAWMVTFAAEVTTVISWVSEKVTEIAGSVSAASGSAAAAAGS
ASEAAQSELIASGAANYRGDYDAGTLYAVGESVSYTGSVFVKKTTAPAGTTPVDGTDWLELGGGGAADFQ
EFTSSGTWTKPDGATFVRVEVVGGGGGGGNITSSGNAGGGGGGEGSLGLFLASSLGSTETVTIGAGGAGA
PSGSTGDASVGGDSSFGSHLIGRGGGLGTTGSVSPFSNECASGSGTQAVYVTSTEAPGQGGFSGGSGSMG
YNGGGAVIGGGGGGGSRSSQAGSGGVSQLAGNGGDGSGAASTKGGDGQSPGGGGGASSNDGGGGDGGDGR
VRVWSW
>gi|99081451|ref|YP_613605.1| hypothetical protein TM1040_1610 [Ruegeria sp. TM1040]
MSLRMIEPETIDDAAFVSSTVPETDAPVWNASTDYPFSDPDNPEEVIVEEGQHAIYRAVSASGPSHGGAV
DPATDTGNTKWVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPNVIDSVALFGLYALSVTVLVRDSGGA
EVYNQTYSLQDENSVVDLYTYLTSPIILSDRLVIADIPPYAGAEVTVTAEAPGEDVEVGQIVIGRKEEIG
VTIDEIPLSIQDFSRKERDSDFGRVSLLEKDFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPY
KANEFSVYGFYQSFQVVPRIGSVSEGILELESIT
>gi|99081452|ref|YP_613606.1| hypothetical protein TM1040_1611 [Ruegeria sp. TM1040]
MSVIPVGALHAEASMETASFEAGSARARKALGYLRGGFEETSRDALRHAEGMARSWDDGFKKAASAAQKQ
IDALTGVERASNSASASAKLWAGQLDRQAKSFDRLRSTLDPVYASSKRYEAAVQQAENAVRSGIVTQQEA
NRVMQLAEQRYLGTSSAADKASTPTRGFLGLFSKERSHDLRQIGLQLSQVGQQGSVTGDYLGAAAIQAAD
IGAMFGIAGIAAGTLISVLGPMAVGLLEVGDASREMEEQSRLNSEAMGELVGALDDYTLYADAARRGTLE
LIEEFGIFAADVKETYEYLSGVSIKRALDGLQTENFDLFANLSDAASAISAMEDALAALERNKSIGATSE
QIQTFKENFEALEEDAYVAAQAVGLMPEEIRAIKAGFDELRGAQALEDIQRESKEALDIIREFYPEGQKL
PSALTDAVVQLEAIITASSRAVSDTEEATSQTIRWADAMMGVNSEIQAIMSSLSAIGGGMLSNAAKFVEI
EALQSGKSIKAARQEAELFNRETDWNARSQGANVFELMAIEAERWVFRSGQAADIMLDKEREAARERERA
LNKVSSASGKSTKALENELKALKASLDPMEAYRQELEKLARFQGVLSEDEMARAMRNLNVELADSLPLVG
DLTDGLVDGLFNGFTDGLEAILNGFEDWLKQMISVALKNEIVVPFMAAFSGGGAVAGGVAQAAAGGGSGL
LGNVLGLGSGGAFSGAVSGISSGLGGVLSGGGLGSSFANLGGLVTGSVGGWGAVGAALPALGAVAAAVSF
FTTKTKHLDNGLRVTADNMGTLVEEFDKVQKSRFWGLSKKVSLTFEEADEATAAPIRKSIEDITTSIGAA
GARLGLTADNFSSWSTQIQVSLKGLDEAARNAEIQRIFDTVADQFSYAALGSFNEAMGGRLIREGEDAAA
TLDALVSSITSANQAMDLLNGAMFETSVYGADLARQLIDAAGGLDTFNASVNSYFTNFYSQEELLTSRTG
LLADQFEALNVAMPATKEAFRDLVEAQDLSTEEGRALYAGLLNLSGEFANLSQLSEELYGSASLAASGIS
ALVRSFSSDVLGAEDELADAQATALVEYNNVMRIMDLQIRSAQSARDSIKGIFDILSDGLGARTPLEREA
QRLQRERLKAELSAGIDDPQRLREVVQGLNAPAEQFFSTYADFAYDYARTSALMDEQKGIAEEQLTEAEQ
QLRALENQKRAIEELYGPLLGIDQNTDNLEEAMERLETAMLGVEAAMLRVEDSMYALAQALLSAVSGIGG
TGGLMGMGPDAFDQLSFDRTNGILSEKGAGVLDGVAAQINGLYQDVFGRNVDVAGLDFYGDLLQSGQVKA
GRIQYDLMTSGEARTGVTPGFGNIGSAAQPVDPVEALYGSMLGRAADPAGVEFWKSTGLQGEALINAFRD
GALAAGDTPSFDGGGYTGSGPRVGGLDGKGGFLAMLHPRETVIDHTRTNRSGGQAEGDSSAVVQELRKIG
DRLAVLESHARATTYNTGKSMRTHTKWDRDGVPKERT
>gi|99081453|ref|YP_613607.1| hypothetical protein TM1040_1612 [Ruegeria sp. TM1040]
MPDVSGVEYLLDIMAPEGIGWCTFDHMGGAQPIEWSEIRSFSKEAGIYLEPWESSQLRAMSVAYVNGLAR
GREPMKVSPAYDDRPDEDPGVALEQKRLSDNLGAALSALAG
>gi|99081454|ref|YP_613608.1| hypothetical protein TM1040_1613 [Ruegeria sp. TM1040]
MDFNKFDSVSAAEKGAAMQLKDPATLAPLFTEDGKPCEVILLGSEAPSVRAAMRELQKARANSQDAEGDT
DDEGVSYDQIHDKLVEGLLPRVVGFNNVFNGDKPATKRDAKWFFGLNRFNGQEGEKSFAEQAAEFSAKRG
GYLGNASAG
>gi|99081455|ref|YP_613609.1| hypothetical protein TM1040_1614 [Ruegeria sp. TM1040]
MAHQTASGVTLGISAAAPATHDITGFDALTFTSVGEITNVGEFGKEWQLVTHNPLATRGTKKGKGSFNNG
TLSPSLALDPDDAGQAAMETALESDDPVYIAVTLQDGTIYYLVGLVMSFKPSIGGVDDVVTATTSIEIMP
DEILKKAAA
>gi|99081456|ref|YP_613610.1| hypothetical protein TM1040_1615 [Ruegeria sp. TM1040]
MTAKKTASAASKPASKDAAPMVVTGVELKRMPMEQNKPTHPFALFKGPLPKPGDVLEFTLKNGVTYRGKV
SEAVESDGEVMAEFSAPLAVVPKE
>gi|99081457|ref|YP_613611.1| hypothetical protein TM1040_1616 [Ruegeria sp. TM1040]
MEEHLYSTLSGALSCPVKWGFFSDGETMPRVTMTRMSGKRYHTLNSKGLMQGSTQIDCWGASYNQAIGAS
REVRAVLEGYRGGPIVSALLTAIRDSNSGDASAAHRVSLTFAITYRD
>gi|99081458|ref|YP_613612.1| hypothetical protein TM1040_1617 [Ruegeria sp. TM1040]
MKSLFKVEGLREVDNALAALPKATSKAVVRRALSKELQPVADMANGLWPGADDSAFAVSSKLKRNLQKAK
SSTTAVTMYVGATPSAPHAHLLELGTEPRFHESGKYVGAVSPQPMLTPSWDAFRGQILEGLAASLREEIE
ATLARRAKRGL
>gi|99081459|ref|YP_613613.1| hypothetical protein TM1040_1618 [Ruegeria sp. TM1040]
MLTSLDGVLRGFDTQENPFTVRDRVNLKDIVTHAGERILIVESFRKSSFHRAHTDVLSQRPSGTQFPDPH
SENGPTLQAGRVDTLGSSHEHELSAAGSDLGPNIDRTTQTIGMSGNATVKRNKLF
>gi|99081460|ref|YP_613614.1| phiE125 gp8 hypothetical protein [Ruegeria sp. TM1040]
MRLTLTTPAADLPVSLEEAKRHCRVEADDTEDDQLLEGLIAAAVDYLDGPSGILGRAIITQTWLLELPSF
PVKLDLPLEPVRSVTITYLDASGAEQTLPEGAYELNARPSQRTQLALVSGTQMPVLKDTSWPVRISIIAG
FGGANACPPGLKVAIKMIVGLWYEHREAIMPVDVNSGWPAPVGALLARWRIPL
>gi|99081461|ref|YP_613615.1| hypothetical protein TM1040_1620 [Ruegeria sp. TM1040]
MKSVEFLKSYRMYQPGEIAGFDDALADKLIAGGVAVLPGAKRALKTETADELGRPVDRDDAVVDVASGTE
AGNGSGIDLSTVVIETGSGDQSSPAAFETVTGDPGAADAADASGSDDATSTDTVGASGGSAKPSKSASGS
SSDTTKKSTAKKA
>gi|99081462|ref|YP_613616.1| hypothetical protein TM1040_1621 [Ruegeria sp. TM1040]
MTTQFRNIGALISVMRATANVAATAGGAGDNVEVVGAIIDRGEIGFPQSCVLAIPFSATLAEGETLSIAC
EIESSNDPNLSGATAVTTAASAVVATGPSGGGAVTGTLELDAAIMGAGRYVRANFTPDLSAANTDTAALS
SVLVFGGADRLPA
>gi|99081463|ref|YP_613617.1| hypothetical protein TM1040_1622 [Ruegeria sp. TM1040]
MDKILELRARRAGIIDRMDALVASIGDGEEWTEDQTAQFDALKAEDDKVTAELTRLEDVERRRAEAARPA
APLPGAAGTEAGGVPTAPAAPKEPGLQFARMVRTIAAAGGNQYVAQQIAEASGDSGLFASQNMSTGTAGG
FLVPEDVSSEVIELLRPLSVVTAMGPRIVPMPNGNMTTNRRASGANFEYGGEQQDIKATGYEYGQVKLSA
KKLSGIIPISNDLLRTASTAVDRMVRDDALADAAQIQDRHFLRGAGTDYAPKGLRFQHTGTPFAATHVLT
MTAAPDLQKVDNDLGRLELALANNNVVVTGAHWIMSPQIAMFLTNLRDGNGNKVYPEMANGQLRMKPVHI
TTEIPSNLGGGGNESEIMLAHPGHILVGEHMGIEVAMSTEAAYKDSAGNMQAAFSRDETLMRMIMQHDIG
LRHLPAVAVLTGVTWAPGL
>gi|99081464|ref|YP_613618.1| serine peptidase [Ruegeria sp. TM1040]
MKQELTALVAAIRAQPWAIMPDYLDAIEAIALRALDEDVLKRIAQDGHIPRLEGNLSAVAAVGTRLEGAG
MSTVRDGSAVVPMFGPIFPRASMINASSDGTSLNAFMRDIRVAQASTDVHRIVVVVDSPGGVVSGLGEAS
ETLRATTKPITAFVTGNCASAAYWLCSQFGEIVMDRSAAVGSIGVVASLSRQEAADNQGRRSYEIVSSNA
PNKRPDPSTEEGRTAIQKDIDAIEEVFIADVAAGRRVSADRVRSDFGRGAMLSATRAIEAGMADRIGTLE
GVLTEGSGRTRKTGAGRSAHAAAEIETRRRAAMRN
>gi|99081465|ref|YP_613619.1| Phage portal protein, HK97 [Ruegeria sp. TM1040]
MGIFDFLRPAATLAEPAVRAEPPVSAASDTSVSSERQWKGFVVAGGRSKAGVPVSETTALTIPATLQALR
ILTGVFAMTPLHFYQKTDRGRMSAEGNPAAQLFRLGPNSHQTAYAFFELLLADILLTGNFYGYVSRDFRG
EVKAVTRLKPGQCQPVEYFDRAEGSILFFDATLPDGSHERFPARDIFHVGGFSRDGVQGLNPVQYARDAL
GGAIATADHAARFWNKGGRPSTVLTSEKAIGPTDKDRIKTDWTQMYSGPDADMVAVLDQDLKAEFLAHDL
KSSQYLETRQFQVVDLARIWGVPPHLIFDLSRATFGNIEQQSLEFVIYHLGPHYTRVAQAATKAFAKIGF
YFEHVTAELVKGDLKSRMEAYWLQRQMGMVNGNELRSYENLPNIEGNAGTDYWMPANMQVAGASAAPGST
EDTSGDQS
>gi|99081466|ref|YP_613620.1| phage terminase [Ruegeria sp. TM1040]
MLDAFIDPAERAAWSTAVPDWEERILNRQSLIPDLPLWDEPAERALRIFKRLRVPDLIGQPTYGEVSDQW
VFDLVRAIFGSYDPVKKRRMLREFFLLIPKKNGKSAIAAAIILTACIMNERPEAELLLIAPTMTIAKISF
KQIKGIIRADPELDKRFHIQDHARMITHLVSKAEISVKAADGDVITGGKATYTMIDETHEFARKSKADGV
FLELRGALASRPEGFVMQITTQSKEQPAGVFKAELETARAVRDGRLQSPMLAVLYELPKKLAKSWQKQET
WALVNPHLGRSVDPAFLQDQLVKAREKGPKELQLLASQHFNVEIGVGLGGGWTGAHYWKKAGPQTFGLDE
LIARSDVAVVGLDGGGLDDLFGLAVVGREIETKNWLMWFHAWAHPEVLRVRKEIASRLGDFAKAGDLILL
GEDEPTGDIEGAARIVGKLLEAQLLPEEAAIGLDTVQVYAILEELMSIGVAEDQLRNIGQDWRLSPAIWG
MERKLKDGTLLHSGQPMMEWVLGNAKVEQRGSAVRMTKEAAGRAKIDPLIAGMNAFTLMSRNPVAAGSKT
FVYNGM
>gi|99081467|ref|YP_613621.1| hypothetical protein TM1040_1626 [Ruegeria sp. TM1040]
MWRIFLAENENPDAFDLFGNPVFSTKGKRGRPKFQRTEENARKVSMLLGLGWSNGRIASCIVDPRTGNAI
SEPTLKRYFRSELGERNKMRDRLEARRFERTWAAAEAGNIGAERLLMQMLEKNDLMGASRRLDDAQSSKD
AAKPDRETKLGKKEAARQAAHESAEDSEWGADLDLPGFRPN
>gi|99081468|ref|YP_613622.1| hypothetical protein TM1040_1627 [Ruegeria sp. TM1040]
MAGFAQALQVIEIPEQIWIPIVATNVITDELRCVSLNRPTHLAGEEITLEALHPQPAPACRAVPFPPCML
LSARRVKVGLQGRNARFQSLKSWLQSLQLRHQRLEL
>gi|99081469|ref|YP_613623.1| hypothetical protein TM1040_1628 [Ruegeria sp. TM1040]
MVPDESARFEQRSVTTLDRLATSTHTLLCTTRPIGVFINPTHSMKRTQVVREDYAPRAICTRERALYERA
RQNLMRLSFAGKASEHIARQVTTMVFTRLSSSRSTARSDRVKAIDTTSTKPCLSLIFLLR
>gi|99081470|ref|YP_613624.1| hypothetical protein TM1040_1629 [Ruegeria sp. TM1040]
MTQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILPEGFPVQPLGM
SAGKYYFLNARGERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDARKDTDFNPANAADKLMQACA
EMPLYDPSKPVRHFGTWRGGSVHPVVHLGETVETSSEEEVVGRMIGSDLYPAVPTLGLPDGVAATAEEMN
IIRMALRDGWNWVSPDAVDLVIGWIGQAALGQYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKS
SGSSASIRQTTNRMAIARIFDEAEGTGTGDIEDVIALFRLMSDAHGARVERGTSDHTGIRFEIYGAGLLG
SIIPGSMTPQDRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRVWRRMLSLASQRWDSTFRVYN
SLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETREAEEEGEGER
LLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRVMPGERGQRDLFVANGENPQL
NKALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRGLVVPARFLPGYIKETASNEGEDGI
>gi|99081471|ref|YP_613625.1| hypothetical protein TM1040_1630 [Ruegeria sp. TM1040]
MQIEFLCPDDARQAEHISETAEEFYASRRPDLDASELAAMSRWLAWKAGVSGQRAVTAGSDGDDGLAREL
EEWCLSLFRAATLAHEFSQSKES
>gi|99081472|ref|YP_613626.1| hypothetical protein TM1040_1631 [Ruegeria sp. TM1040]
MKDGFDLVDTGDPFDTITPVIPISDRPRSQSVVAGTLNDPYRRQAVADARSLWRKSIPGSRGVVAAYLAS
QGIQLDEIPANLRFVLDHPYMKKSGGLYHELHRGPCVLGGIFSEAGQLLGVNQIWVDPKPPHGRASIQMD
GDHMPAEIVRGSCKGGFLPLVWPEAATALVVARSLEAALRAYASRPSGLEDAAYWAVVDLKVMSGKMQRQ
KGVRYSGLPDLSDDTSFVAPHWVKRLVFLQEDDRTGTRQKLESGLKRSMHVRPGLRASIVRIGSAAKGGV
>gi|99081473|ref|YP_613627.1| hypothetical protein TM1040_1632 [Ruegeria sp. TM1040]
MRDDRGWFRWKRKSPHAEGGPLNVQDAKCCEGKPEESQSERRGSLLVELCVLLKAVQPEDVRKVATLLVS
WLDGAGAGMPELDVFGDLRGDARFWADIAHPAELEAYVAAGIRRLERTQLSEAARKRLFVAFWEVMADAD
RRKFLERADPAGTFYKVKP
>gi|99081474|ref|YP_613628.1| hypothetical protein TM1040_1633 [Ruegeria sp. TM1040]
MTLRPIDVSEQPPVQVKAPVSEPELRWLEISDLVVNDLYQRPLGAKNWSVIRKIAIKFDWSKFTPITVAP
SGEGCDRFAIIDGQHRVHAAAMRGLVRVPAMVANIAPPEQASCFAAINSARTNVSAFHLFKAGLAAGDTS
ARIADAAVSASGCRLMPYNKSARNREAREIYAIGLVRGYTSQKNGASIVTRALRALSGSACAEDPQLYQA
RILRPWFATLWDEPEMCELNLEAFVSKANLVSVRDRIGVMRERPEFAKWSDYALAAKSFKALLRQSARSG
EIGSYLPSEGDEG
>gi|99081475|ref|YP_613629.1| hypothetical protein TM1040_1634 [Ruegeria sp. TM1040]
MSAHSSRSRSRHPDPKTFDREKFRVGHILFELCDHPENGKTFALIAGEATEAKFMRPMFTGFVQRGMGTQ
LRRLAHRFDELEADLSTDGDDA
>gi|99081476|ref|YP_613630.1| hypothetical protein TM1040_1635 [Ruegeria sp. TM1040]
MDKKLSAHMAKALIKRAGGIPAACAAIEAETGEGIAAGTLSKVQNGHLDISFLCVLALTKATGDRSFVNL
LNRECEDATGAEEILAHHLEMLRESTEMVEAVARAEQKPSRETIQRARKEAADVHEQSGRAIAAYDAMLN
ELNAGVASIRRSIAGDVQ
>gi|99081477|ref|YP_613631.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MKMNSLVTITSVMSANRSQTTGKTSFSNEMRPERIGYRLGLLRRALGLQPAEIADLLGIERTYWSRTEGG
KRAASKELAALLVERFGVTMDFVILGQWGGLPLDLATKMRNIENQDS
>gi|99081478|ref|YP_613632.1| hypothetical protein TM1040_1637 [Ruegeria sp. TM1040]
MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIGRFFRICEALS
IKPDAQLLDIAEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPDDTTLSLLHLGEKSLAARVLP
IQSNDMLQRAVDNFPAADRKKLVTSYQLAGKGTCLISIETLATHVHGQPEVNELMYKRLLFPVKDFNGKP
AVGVYAIPASSRANSST
>gi|99081479|ref|YP_613633.1| hypothetical protein TM1040_1638 [Ruegeria sp. TM1040]
MRNALFVRSFMLLLSVCMDARLVTNMVIVNNKNDQKGHNESPVWSHSILRVSDSMRCCIRASIDGEAENL
MTEHVFSLVSAINARMDRLRSRGCELAVTHDFEDAARRLEAVGKPYLTPSLSFAWNDFTRDSCFWVSLAL
EGDVMGAAGVKREVLNGEPISSYWRRSLKRQYPRDDGADVISSVSPLVDLSLGGELAYFGDLYFHPKLRE
LRVLEDFGRVVLYHAALSFRVQTFYAFLKDRDLRRGFGFQLGLMSCIPQAQVWSQPFPEGRGSHEACCFS
RRDQVLELARLDAGIA
>gi|99081480|ref|YP_613634.1| hypothetical protein TM1040_1639 [Ruegeria sp. TM1040]
MTPCPIATFARTLLALPANERRDSFATAVIEAGGTYPIDLAACTPFEVQLAGYSALAHSEDAAICAWAEE
VLKNADLVEDDGFLTIHPRLQQGPVPAGPC
>gi|99081481|ref|YP_613635.1| hypothetical protein TM1040_1640 [Ruegeria sp. TM1040]
MNFDFDLPAKALFRAMPICRENTRFNIDGVLIDPDPNGGAWLVATDGKGMLVQYDPDTKVPEKCVVKVSA
AWLTETRFDYDMSLIGDLNDIHWCDTRLEFSKDTMTAMSSDFDIAHCLAEAGPDVFCQIRYNPISFPDWR
KALDTSANTSELARPVERQTALDTGYLTDLIGWSRGFQVNPAPAGHARLISFVGEPNTFAVLMPMVADAT
DPLPPLLERAGRADLIQGPQRAAE
>gi|99081482|ref|YP_613636.1| hypothetical protein TM1040_1641 [Ruegeria sp. TM1040]
MVEFIGKQYVSDDGAETLADLRVGSTLKPQGTAPISMLARVPSDECGCPEELWRLDGIDLLFHFEEDGQS
EALLFAGDWEMETTLQARSLDDLRAKSFQWFADVMDFAAEPETSGASS
>gi|99081483|ref|YP_613637.1| ParB-like nuclease [Ruegeria sp. TM1040]
MTKHSPLNHPDAPLQYLPLSELYLHDMNPRQDTPDDDVAAMADSITVNGLLQNLLGYRDPANSGVGIVAG
GRRLRGLIHLGKNGAQMLDSKAPDLSAIPVQVTDDAFLARAWAGTESATQKPLHPADEIRAYAALADQGN
SAEMIARTFAQTVRHVKGRLALAHLCTATIEALRRGDITLDVAKALTLARDPEQELEVLQGALDGKRQEW
WVKQQLTDSKVRASNYKAAYVGRDGYVAAGGRMRDDLFDDESYLEDPDILDALFEKKLADIAEGIKVQFG
WNWVKPHSESHIPYSLTSNLTQVAGKKTPLSMKEQNEQAELQDKEFRETLTPAEAKRLNELESKAKPFWE
EATRAKCGIYVYVDHRGKLCIDGAYKDQKSTKKNTRPGDAGAETDIPSPKLTQAGVEDLRRIQLLALQTA
TLGKTELVLDLFAWQLECGYATYSGLFNISLTDPQIEPEAEGAWTVDDALSDGSNQRELGRTQGNYAESF
KTFQAKGKKHRNTVLTRHLIRTINGQTVNALGTSLLAPMVEPDIRSVWTPDAPTYFSRISKAALESLWQD
LVLEGRPEADAADFNAMRKSDKIENLHRLFNDADFRKALQLGPEAEHRIATWLPPEMETEAAQ
>gi|99081484|ref|YP_613638.1| hypothetical protein TM1040_1643 [Ruegeria sp. TM1040]
MPVQQLFVKEADIAKMLGHDVKWLRSNSDTLERQYGFPKIDPAIGMRHREAVEEWARERNTRTAAARSGR
LTESNHTENTDAF
>gi|99081485|ref|YP_613639.1| hypothetical protein TM1040_1644 [Ruegeria sp. TM1040]
MRFRDSLWDDSEPAYAPFLKYRKDRDRYFWRPTSKYLDAGYSIKTYDLGGSQGDGLDLERAAQCRALTRE
MLQWFDGEKQGRKPGTWGWLIARYLSDEFSSYHDVLPQTQDKYRQMMGYIEQAIGNVLIEETDFERMMRW
KKAMQDKGRSTHYIKKWFTHWRLVVSHGIKIGDDHCSKIKAIREEVRIQNPPRRSTYATREQIEAIVAQA
DRMGRPYLSLAILMRFEFILRGVDVHGQWVKAKDQQGGVRDGGQIWVDGLTWDMFDRDLTSFTKVISKTR
KSLTEPYTFSLKHTPEIRERLLAIPKDQRTGPVIKLSSGKPPKNGVISRSFKEVLRQVNQARKRSDLEPF
PDELQIRDTRAGGITEAMSLVDPTTLQHAAQHTQGATTAIYTRDRSGSANNVVKIRANRG
>gi|99081486|ref|YP_613640.1| resolvase-like protein [Ruegeria sp. TM1040]
MASESENQPTRKIGYARVSTADQNPDMQIHELKRYGVPEELIFVDRASGGTMKRPQFMRALRYAQYEGTE
LVVWKLDRLGRTLGGVLDTLKLLSDRGVTFVSLTERIDTTGPMGKAMIHLLAVFAELERDLIVERTKAGI
ERAKERGDVGGRPKAMTPERVAKAEEMLAAGERGNTVWKAMKELDGPTISRAAYYAWQKEWDAGHRAPDI
VGE
>gi|99081487|ref|YP_613641.1| hypothetical protein TM1040_1646 [Ruegeria sp. TM1040]
MPRSEICKNCCPNGGALFDLKYGEFEDFDTGEVMAEPGYRKICRNCGYAKKVRKRKPRPTIDQICQMQSP
EGLRNCKDLGRFHYFAEAGVWKKLQSVCDRYAELARERGITKYPLFLHWRYNRHDAEALYKEISKSRSNA
RQVRIRISQLQDLLERAEVALKNDFQMKAAA
>gi|99081488|ref|YP_613642.1| hypothetical protein TM1040_1647 [Ruegeria sp. TM1040]
MGLWHAGIAAAARHIELVPDDAAPDLAPQLPPGRFNRFILDVIRFHWVGPASATDFMIGLSGDMAGLERF
DMLVKRADVVDRHSALSHAVGSPHEVPHAFVSDRQVVRPIDRPGCAFHEPNFLAPMFLPALHGRLGFDGI
VGGTAHHAAAFI
>gi|99081489|ref|YP_613643.1| hypothetical protein TM1040_1648 [Ruegeria sp. TM1040]
MHRGGISGVFKFRGQRADLVGVHTVPRIAEFHAVMRRLHKASVEVLPGLCGRSPFAIHDLVSITVQDALR
DVVPSDILADELPRHRVIVAQFFKAFCWCHVASGGF
>gi|99081490|ref|YP_613644.1| hypothetical protein TM1040_1649 [Ruegeria sp. TM1040]
MTGLIAFLMRMGFGGMVDKAISHLERRAELQNDREKLRSQTTVELAREAVKEAQVMADYNRAKLAFPWFW
LFAALFLVPLAAWWNAVILDSIFGFTWSVADLPTPQMQEWAGDMIRWLFYVGTGVGALKSLR
>gi|99081491|ref|YP_613645.1| hypothetical protein TM1040_1650 [Ruegeria sp. TM1040]
MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEEVKAIYRSQYW
DKVGGDELPGGLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTMEAVDRADVEGLIQSICQARFS
WLKKLRHWGTFGRGWTRRVMGESLGVQARDTGVIDRAVYLHRELAVIHAPSYREDGSGARAEDGERSLSA
TVKELITSGKGWTNGGALGGGAIALTQLQGPVAYAVAAALLIAAVTVALYFLRSQEAAA
>gi|99081492|ref|YP_613646.1| hypothetical protein TM1040_1651 [Ruegeria sp. TM1040]
MTWGKFIVGAWGAVLALSLMTSALPASWWFQAGEVRVADASSGECPEMQFDREINRPFKAAWTVTIMGRA
SYGWATYRTFQGANDYRPENQLPDKLDLCWWTWADPLHLPPGEYRVNTLWRIHPTQGRAREIRRTSNTFT
ISGG
>gi|99081493|ref|YP_613647.1| hypothetical protein TM1040_1652 [Ruegeria sp. TM1040]
MAAAILLKLRASPQITLFGAITTTASAICCALVFTEPLMDWLELDGEVYTYAVCALIALTGEHIARQILS
LGIEDAVRLLRGNKK
>gi|99081494|ref|YP_613648.1| hypothetical protein TM1040_1653 [Ruegeria sp. TM1040]
MTGIGRSNWYIRHGDGYFTTTELAWEIGAKGSGLFIYVPPGFAFDVSIPRWAGWIFDRHDPRYLKAAALH
DYALHRLGWGRVSAAAPFSEALRAAGVSRIRRLAMVLAVTIHKWR
>gi|99081495|ref|YP_613649.1| hypothetical protein TM1040_1654 [Ruegeria sp. TM1040]
MTYALVRDGVLIQYPYSLEDLRRDNPRLSLPLTLPSFKLAEYGMLPVLIAERPTQAMDETAVLSETPELV
EGQWVLGWTVRAKTPEEVAAERQKMRARVNAERARRLVAGTKVTVTGNGPVALSGRDEDTRNLQGLAFAA
QLRLADGNTTHQTTFRDAENVDHVLTPAQVLEMWSLGSAWIEQVYAASWALKDTQGGIPADYANDGYWPQ
>gi|99081496|ref|YP_613650.1| hypothetical protein TM1040_1655 [Ruegeria sp. TM1040]
MTGTVKNFTLKLTGGSENVGFALTSATYDGVSFSVGAQGTEPKSITFRPDGTKMFVSDGSTPDSIYQYSL
STAWDLSTASYDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQYTLSTAWDLSTGSYDSVSYLV
PSPVTQPQGLAFNPDGTKMYVQGYGPNEGISQFTLSTAWDLSTASYDSVNFDFTAPSVSFAVNMSISSDG
TKIFLQNSSSVIQYNLSTAWDLSTATYSGVSFSVSAQDTAMKHAVFKPDGTKMFVAGDANNSMFQYSADV
DVDFTLTYPTIQWPGGVTPTVASGGDSDLIDFTTYDGGVVFYGTKRGDTYS
>gi|99081497|ref|YP_613651.1| hypothetical protein TM1040_1656 [Ruegeria sp. TM1040]
MSFRMIEPETIDDAAFVSSTVPETDAPVWDASTDYPFSDPDNPEEVIVEVGQHAIYRAVAPSGPSHGGAV
DPATDTGNTKWVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPKVIDSVSLFGLYALSVTVLVRDSGGA
EVYNQTYSLQDESGVVDLYTYLTSPIILSDRLVITDIPPYAGAKVTVTAEASGEDVEVGQIVIGRKEEIG
VTIDEIPLSIQDFSRKERDPDFGRVSLLEKDFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPY
KANEFSVYGFYQSFQVVPRIGSESEGILELESIT
>gi|99081498|ref|YP_613652.1| hypothetical protein TM1040_1657 [Ruegeria sp. TM1040]
MSAIPVGALRAEASLETASFEAGSARARKALGYLRTGFEETSRDALRHAEGMARSWDDGFKKAASAAQKQ
IDALTGVERASNSASASAKLWAGQLDRQAKSFDRLRSTLDPVYASSKRYEAAVEQAENAVRSGLVTQQEA
NRVLQLAEQRYLGTSSAADKASTPTRGFLGLFSKERSHDLRQIGLQLSQVGQQGSVTGDYLGAAAIQAAD
IGAMFGIAGIAAGTLISVLGPMAVGLLEVGDASREMEEQSRLNSEAMGELVGALDDYTLYADAARRGTLE
LIEEFGIFAEDVKETYEYLSGVSIKRALDGLQTENFDLFANLSDAASAISAMEDALAALERNKSIGATSE
QIQTFKENFEALEEDAYVAAQAVGLMPEEIRAIKAGFDELRGAQALEDIQRESKEALDIIREFYPEGQKL
PSALTDAVVQLEAIITASSRAVSDTEEATSQTIRWADAMMGVNSEIQAIMSSLSAIGGGMLSNAAKFVEI
EALQAGKSIKAARQEAELFNRETDWNARSQGANVFELMAIEAERWVFRSGQAADIMLDKEREAARERERA
LNKVSSASGKSTKALENELKALKASLDPMEAYRQELEKLAKFQGILSEDEMARAMRDLNVELADSLPLVG
DLTDGLVDGLFNGFTDGLDGILDTFENWLKQMISVALKNEIVVPFMAAFSGGGAVAGGVAQAAAGGGSGL
LGNVLGLGSGGAFSGAVSGISSGLGGVLSGGGLGSSFANLGGLVTGSVGGWGAVGAALPALGAVAAAVSF
FTTKTKHLDNGLRVTADNMGTLVEEFDKVQKSRFWGLSKKVSLTFEEADEATAAPIRKSIEDITTSIGAA
GAQLGLTADNFSSWSTQIQVSLKGLDEAARNAEIQRIFDTVADQFSYAALGSFNEAMGGRLIREGEDAAA
TLDALVSSITSANQAMELLNGAMFETSVYGADMARQLIDAAGGLDTFNASVNSYFTNFYSQEEQLTSRTG
LLADQFEALNVAMPATKEAFRDLVEAQDLSTEEGRVLYAGLLNLSGEFANLSQLSEELYGSASLAASGIS
ALVRSFSSDVLGAEDELADAQATALVEYNNVMRIMDLQIRSAQSARDSIKGIFDILSDGLGARTPLELEA
QRLQRERLKTELSAGIDDPQRLREVVQGLNAPAEQFFSTYADFAYDYARTSALMDEQKGIAEEQLTEAEQ
QLRVLENQKRAIEELYGPLLGIDQNTDNLEEAMERLETAMLGVEAAMLRVEDSMYALAQALLSAVSGIGG
TGGLMGLGRDAFDQFSFDRTNGILSEKGAGVLDGVAAQINGLYQDVFGRNVDVSGLDFYGDLLQSGQVKA
GRIQYDLMTSGEAQTGVTPGFGNIGSAAQPVDPVEALYGSMLGRAADPAGVEFWKSTGLQGEALINAFRD
GALAAGDTPSFDGGGYTGSGPRVGGIDGKGGFLAMLHPRETVIDHTRTNRSGGQAEGDSSAVVQELRKIG
ERLAVLESHARATTYNTGKAMRTQTKWDRDGVPKERTE
>gi|99081499|ref|YP_613653.1| hypothetical protein TM1040_1658 [Ruegeria sp. TM1040]
MIPMNWIQEDFEVMRFLVVAAGLIAFQAPAAGARGFDVPHRDCINLLDEIYDLPAALDKVYEAHSRLLTK
EQNPSPELEKIATHLKEMRRTHIKEWKGIPEELRAYCEGLKF
>gi|99081500|ref|YP_613654.1| hypothetical protein TM1040_1659 [Ruegeria sp. TM1040]
MYHDGRRIASLLAQFDPAGHLQSVSTGKSAEEGRDSDAALAVTGGLPGVLSAKNDTKEITRRSHAEEIQR
VYDPMWSNARALLDTLDEKGLIQRGLSDACLGQLVLVKGKLSIFDLQMVAGLWSMKSVQGKIQESLPTIP
KLPKGVKETPEMRASVRIAKEALAEAQFSLDLFKDMAPTLPHTAQAEVLDANGNRVWCTMDTSGLATPPS
EIALKHGTDVPGDWAMLGILDAEPTLGSQSARDVSPDGEEMVMKLFENLAPAFRTLLGRPKAAHGMTPLM
VFREVVAARKEDL
>gi|99081501|ref|YP_613655.1| hypothetical protein TM1040_1660 [Ruegeria sp. TM1040]
MPDISGVEYLLDMMAQEGLGWCSFDQMGGAEPVAWSEIRAFSKESGLNLEPWEAKQVRAMSVSYVAGMAR
GQRPMQVSPAYDDRPDNDPGVAMERKKLSDKVGAALSAMAGS
>gi|99081502|ref|YP_613656.1| hypothetical protein TM1040_1661 [Ruegeria sp. TM1040]
MDFNKFDSVSAAEKGAAMQLKDPATLAPLFTEDGKPCEVILLGSEAPSVRAAMRELQKARANSQDAEGDT
DDEGVSYDQIHDKLVEGLLPRVVGFNNVFNGDKPATKRDAKWFFGLNRFNGQEGEKSFAEQAAEFSAKRG
GYLGNASAG
>gi|99081503|ref|YP_613657.1| hypothetical protein TM1040_1662 [Ruegeria sp. TM1040]
MAHQTASGVTLGISAAAPATHDITGFDALTFTSVGEITNVGEFGKEWQLVTHNPLATRGTKKGKGSFNNG
TLSPSLALDPDDAGQAAMETALESDDPVYIAVTLQDGTIYYLVGLVMSFKPSIGGVDDVVTATTSIEIMP
DEILKKAAA
>gi|99081504|ref|YP_613658.1| hypothetical protein TM1040_1663 [Ruegeria sp. TM1040]
MTAKKTASAASKPASKDAAPMVVTGVELKRMPMEQNKPTHPFALFKGPLPKPGDVLEFTLKNGVTYRGKV
SEAVESDGEVMAEFSAPLAVVPKE
>gi|99081505|ref|YP_613659.1| hypothetical protein TM1040_1664 [Ruegeria sp. TM1040]
MKWGFFSDGETMPRVTMTRMSGKRYHTLNSKGLMQGSTQIDCWGATYNQAIGASREVRALLEGYRGGPIV
SALLTAIRDSNSGDASAAHRVSLTFAITYRD
>gi|99081506|ref|YP_613660.1| hypothetical protein TM1040_1665 [Ruegeria sp. TM1040]
MKASFKVEGLREIDNALAALPKATSKAVVRRALSKELQPVADMANGLWPGADDSAFAVSSKLKRNLQKAK
SSTTAVTMYVGATPSAPHSHLLEFGTEPRFHESGKYVGAVSPRPMLTPSWDAFRGQILEGLAASLREEIE
ATLARRAKRGF
>gi|99081507|ref|YP_613661.1| hypothetical protein TM1040_1666 [Ruegeria sp. TM1040]
MRLIERVAFDELVGGGDSFGGKDKEPIERFSTRAEFTYLRGGEKVQAGRLSGTQAIVATVRKSVSTAVIG
TDGTTRWQLRDIGKGTVYNIRAVEPNREKPRQYLDFICESGT
>gi|99081508|ref|YP_613662.1| phiE125 gp8 hypothetical protein [Ruegeria sp. TM1040]
MKFRPILTAPPAESPVTLDEVKAQATVDFADDDALLTGLRDAAVAYLDGFRGVLGRAMVTQTWQVQRASW
AREMCLPVPDVSAVAISYADAEGAEQTVAAEHVDRLPVATGTLVHLSDDFGLPTLESGNPAPITVQFTCG
FGAAADVPANLKLAVKALAATWYETRTTEPSEALPMGVEALIRPYRWVAI
>gi|99081509|ref|YP_613663.1| phage major capsid protein, HK97 [Ruegeria sp. TM1040]
MAEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMNGFKASLDALE
QKLARGAGGEGSDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATLTLATTDTDGAVGDGVAPTRL
PGIQGLPQRRLTIRDLLAQGRMDGNTIEYVQETGFNNNAAPVAEGAAKPSSDIKLDVKTTTAKVIAHWMK
ASRQALDDVSALRSMIDQRLLFGLALAEENQLLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLA
MLQAALAEYPATGHVMHPTDWARIELTKDGNANYIIGKPQGTIAPTLWGLPVVATQAITVDKFLTGAFNM
GAQIFDRWDATVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLGYVA
>gi|99081510|ref|YP_613664.1| prohead peptidase [Ruegeria sp. TM1040]
MTMMHKAAAPILSIKALDEETGEFEGYGSTFGGEPDSYGDVVVAGAFADSLAEHKAKGTMPKLLWQHDPS
QPIGKLLEAEEDETGLLIRGRLNMGVQRGREAAALLKAGDIDGLSIGYRITPGGFRVDDDNGVWYLEKLD
LFEVSIVSIGANESATITSVKAAKAAHEITEKLKAGDRLTEREFETLLKGSLGLSNSQAERAARIHLKGP
GEPAAATEARALLEALRA
>gi|99081511|ref|YP_613665.1| Phage portal protein, HK97 [Ruegeria sp. TM1040]
MGLRDRLKSMIIRRFGLTDAHQMGLHRASDAGEIVTGHSALGISTVWACTNLIAGTIGSLPLMVYRRNGQ
TRTVDRSHVVYRLLHDSPNYDQTALDFWEFMAASLELWGNAYAHILRENGKIVGLVPVAPDLMRVRRLPT
GEIEYRWSEDGKTHRELDGAVLHVRGFGGSPLGGMSTLQFARNAFGLARAVDRAAGETFKNGMRPSGALK
FDNWLTDEQRARAKSTLVDDMVGAQNSGRPIVLEGGTNWVPFTINPDDAQMLESRRFSVEEICRFFGVPP
HMVGHTEKSTSWGTGLEQQTLAFQKFTLRRRIKRIEQALMKQLLTPAERARGLMIEFNLEGLLRGDSKSR
ADFYQSGLQNGWLTINEVRALENKPPVAGGEVPRMQMQNVPITEVGKQLEAGNDDDA
>gi|99081512|ref|YP_613666.1| phage terminase [Ruegeria sp. TM1040]
MSSSERIDQTTRYARDVVSGKIVAGAFVRAQCQRHLDDLKHGPARGLQWDIEQAERAIRFFPAMLSITEG
AKEGEPFKLLPWHLFVVGSIFGWRTAEGFIRFRFVWLETGKGQAKSPLMAAVGIYLSGFYGRKRAEVYCI
GETKDTARVMFRDAVAMLRAPIPGKGGMTLEDAAFVIRGTGDLAYSVEHPDSGSFMRPIANNDSVSGPKP
ILVAGDEIHEMKSGKAIEMWRAAVTKKHGDSILMLGTNTPSADQQVGTDYSEFCQKVVTGDFTDDSVFAY
IARVDEGDDPLEDESCWVKALPALGITYPVDNVRKLVVTAKQQISTQLTTKRLYFGIPVGSAGFWTSEQA
WKEVQGKVDDAKMIGRRAHLALDLSEKNDLTALAVAWEGERIDVKSWYWTREFEIEERSTADAIPYRELE
AADLIEVTPGRVIDYTFIAAKIIDFCGRHSVVQMAIDSAHMEKLCEAFDKAGFAYWIEEGDDKPGSGLKI
VRHKQGTNVSFDGKFLCMPTSITQLEDHMLKGTVKIDRNKLTSICARNAIIREDGFGNRMFDKSRSRGRI
DGVVTLAMAVGSATAAMKTKSGLDDYFASLGGG
>gi|99081513|ref|YP_613667.1| hypothetical protein TM1040_1672 [Ruegeria sp. TM1040]
MTRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAEYLHYQPLAVA
QGPVRESGDGGQYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPKKTPEKTAADEFLGAH
>gi|99081514|ref|YP_613668.1| hypothetical protein TM1040_1673 [Ruegeria sp. TM1040]
MEIAGHPARLVLFVQLSSALSGILPVGDVHFCAVLALRTASSSFAIRIGRGSSCQPSGSLTAKRARASRY
LRSMSVLQFKFPPPCIQQDNAMTPLHLAVDALAHAGL
>gi|99081515|ref|YP_613669.1| hypothetical protein TM1040_1674 [Ruegeria sp. TM1040]
MTWYLGRTTTRHIAPEPGAEKERGEFAVERQLRALGIEAHAPRRIEFKRVGKKRHAEPITSAYLPGYIFA
EIPASMFTRAIQCRGLSASLMAVPAQEVLHHVKPFIAKVKSENADAERIIESRDRAAMCQFQPGEALDVL
AGPFAERLVKFTRMVEAAHDSYPMIEAQIEILGRLTRVKIDPLDVRAAS
>gi|99081516|ref|YP_613670.1| hypothetical protein TM1040_1675 [Ruegeria sp. TM1040]
MRGRPLKDRMPPEFWERVEVALVVGQVTFTEWSASIGKSCAAVSSLRARGTRPPDEYIDALCALTGCTRE
FLFNPEPVDLSK
>gi|99081517|ref|YP_613671.1| single-strand binding protein [Ruegeria sp. TM1040]
MAGSLNKVMLIGNLGRDPEVRTFQSGGEVCNLRIATSESWKDRNTGERREKTEWHSVAIFNEGLVRVAEQ
YLRKGSRVYVEGQLQTRKWQDQSGQDRYSTEIVLHGFGSTLTMLDGAGGTQQSGYENSGYGGGYDSDGTQ
GSGYGSDSQSIDDDEVPF
>gi|99081518|ref|YP_613672.1| hypothetical protein TM1040_1677 [Ruegeria sp. TM1040]
MTFMPIGQTGQTLAEESLDAVGGKRGATAVATSRQNSSEIAEWLAKHTPADMDKAAVSRARSHGVNLEVK
FEGRYPTGPNGEYLPSYEVAVGCRIHGTTAQREAAIEDLKKFQTPAPIPQIERWLAELSVLTAGRGTDGI
AAELQLTAYSSRLAQYPADVVRHALLQHSWKWFPSWAELERLCEAKASPRRHMIAALSQPAPDPEPKRRP
PTNEERARIQAMVDEMFPRQSRKDREAAVDIALRGDCMMGDPS
>gi|99081519|ref|YP_613673.1| endodeoxyribonuclease RusA [Ruegeria sp. TM1040]
MKSTTIRLSWPRRALWDNEKASHMVRAAAKRTQRKEAWALALEAKWPRDPAAVLTFRFCPPDRRRRDTHN
LPATMKAAIDGIADAMKVDDVGFRCVFPTEFGPVEKGGAVYIEIGGQP
>gi|99081520|ref|YP_613674.1| MT-A70 [Ruegeria sp. TM1040]
MAAFSNFADMPLFRYGLIMADPPWSYENWSAKGDHKNASAKYDCIGLDDIKGMQVGHLAAESCVLWLWAT
NPLLDKAFEVMEAWGFQSKTAGHWSKKTSGGKQAFGTGYILRCAGEPFLIGTVGNPKTARNVRSVIEGPL
REHSRKPEEAFAAAEALCGDVPRLELFSRQERTGWDVFGNEVDKFQGAAA
>gi|99081521|ref|YP_613675.1| hypothetical protein TM1040_1680 [Ruegeria sp. TM1040]
MLDDPLTAIYAKVQAQQEAEARKIAAIAAHIGHNGGPRIEAPFGIDAPWLRYADDAELSRLATLEPRIER
KKLILAETIAERTRIMNRCIRRMRRAAGKD
>gi|99081522|ref|YP_613676.1| hypothetical protein TM1040_1681 [Ruegeria sp. TM1040]
MQPKIAAQMFDNLVTQAGGKEAAASVIASAVGHSISIGTLTKIKNGQLEVPLLWAWALMDATRNNCFDTY
RASSVRDGGETCLYALSGEASEEGGQAVCAGIRAAQSGDAGDYAAAVVEAREASAKFDEMAVRFEALAAG
VTPIRKA
>gi|99081523|ref|YP_613677.1| hypothetical protein TM1040_1682 [Ruegeria sp. TM1040]
MDMGEILARITERREELKLSEQALALQSGMSKDGIRNWRRRFEAGDDNAGANVSSISKVASTLGVSELWL
LHGIGESKTPTISIAGKVGAGSQVPVFDAYEKGDGPQVECPPGIGPHGVVAVEVEGDSMEPVYSAGDLLF
YSRNGHDSVPDDVVGYKCVCEDADGMGWVKQVKAGDEPGLFHLISLNPTGANMWNVRLKWAARVRLHWPA
EFARKK
>gi|99081524|ref|YP_613678.1| hypothetical protein TM1040_1683 [Ruegeria sp. TM1040]
MAPKKSLLERMRANPRDDWTITQVETLCKKIGLDVRKPNGSSHYVVSSKYLRDSLCVPYKRPIRALYIKN
LVSYSDAHAEMQSKDSSNV
>gi|99081525|ref|YP_613679.1| hypothetical protein TM1040_1684 [Ruegeria sp. TM1040]
MSEYPIVIAPLPDEDGGGYIALYPDLPGCMSDGDTPEEALVNAKDAFDAWIEVQKERGASIPAPGDSSSE
NAKRMDSLMEALKVALDRVELADQHIKSLEAALEKAIRQNTGSWQPSGMLAHTTPADNISHIH
>gi|99081526|ref|YP_613680.1| hypothetical protein TM1040_1685 [Ruegeria sp. TM1040]
MQVQDFDLTSSKPVISATQVAAYSKAKNCPWLTLSDVQSSTAVQHRVLAFINAGSNPMEHHRAKLVDNGL
AGAAQTINRITSPEKAKFIAGEFIRKARENRLLGGADVALALSQAARYRKAAKQHIQAAE
>gi|99081527|ref|YP_613681.1| hypothetical protein TM1040_1686 [Ruegeria sp. TM1040]
MSHLSNVTPIRTPAAKSTTHGTHSTRRRGLGDHPGMGKHLERMNRERNASRNHDQKNWTLTLTFWALMIF
VAILTAVSVGASLSQPY
>gi|99081528|ref|YP_613682.1| hypothetical protein TM1040_1687 [Ruegeria sp. TM1040]
MTLKITKSDEVIEVKNLCVTIYSQPGLGKTSLAFTASRPLLLDFDKGAHRAVDRKDVVQVEDWRDVAGIS
AGDLAAYDTIVIDTVGKALDTLSADIIRANSKLSYGGALNQQGWGQLGVRFSAFLKLLRSFGKDVVLISH
MDEKADGDAIKERLKISGGSKDLVLTDSDVIARISIYNRERHLIFSPTETSFGKDPANIGAMPIPEASAE
TYATCLSDIITQIKEGMNALSEEQVQRKAEIDWFATKLPEMTSAEEINGVLGRAKKAGKDIQKMVVARAK
ELGFDFDPEAREYVDPSAALADELDDEIPEFDDADEPESPAMAAE
>gi|99081529|ref|YP_613683.1| hypothetical protein TM1040_1688 [Ruegeria sp. TM1040]
MPLDMSAIQEAYASHSFVYFDIETIPCQDESYLIDLERKVKPPANLKKPESIEKWLAENRKSAAIEALSK
TSFDGGRGHVCTIAWARNDGPVAVRHAKTTADERSILADFFGDLDPYHSETLVGHNIAGFDIGFLRKRAI
YLGVKMPASCSFPRDPKPWDRSIVDTMAAWAGGTNRISMDELCQILGIQGKDGFDGSQVAAAWAAGEHDK
IAEYCKDDVWRTREIHKRFLAAGY
>gi|99081530|ref|YP_613684.1| hypothetical protein TM1040_1689 [Ruegeria sp. TM1040]
MHDAMNKAQKATQYLIDSAAEIAAAKADLTKAENMLRVVKAMAMKHSDEKSAAAQEREAYASQQYLSAVN
ELALVAGEYEKLRALREAAKQQIEFWRSLNANQRAAERGYGSAA
>gi|99081531|ref|YP_613685.1| HNH nuclease [Ruegeria sp. TM1040]
MTRPVAEWIGKTDATPAPARVKARIIMAQDGICACGCGVKLGAAGEAIEFDHETALILGGENRESNLRAL
RRPCHSLKTKQDVAQKSVEARKRNKSLGLHKPKGTLPGSKASKWKRKVDGTVVPR
>gi|99081532|ref|YP_613686.1| C-5 cytosine-specific DNA methylase [Ruegeria sp. TM1040]
MTAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEANHPEALHLSEN
VYRIDPLEHLSGKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGWIERIQKSGGKVDVVLMENVE
EFAGWGPLIETDKGLMPCPERKGETFEAWCKKIRSLGGKLERRELRGCDYGAPTIRKRLFVAIRFDGEPV
SWPTPTHGDPNSAEVKSGKLKPWRTAAECIDWSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGL
HRYVLQAERPFLVNLTHGGRVEDVAEPFKTITGANRGEKAIVAPSLVSVAHGDSGGRRKYPLTDPYGVVT
AGGVSNALIAPSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVLAPYLATMRNSLKPWQEVTKP
THTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGANRSMLDPHHT
ICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPVAAFFAKYYGTGDGARADAPL
HTITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDHGLWDEREFVTLEIEGQAFIIVDVGMRMLTP
RELFNAQGFPADYVIEGIWKQESDDWTFSTFPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ
>gi|99081533|ref|YP_613687.1| phage integrase [Ruegeria sp. TM1040]
MRRPNKPRIVKPGLVWKWDTRNSIWVPYHRVNWTEGGKRKQRTTKLDWRGDSERLDMLYWQCRAGKHKKQ
TAPAKYTWRQLITAWREDPRVQSRLADGTKRSYSRTMEAILDKNSDKDVRRTTRQAIRTAHSKMSETPRK
ADKYLQTVSLLWNYGAEKLDWPLGPNPAKGIEHFGKQSEYEPWPEWMVDKLKDAPEHVRTAAELILGTGQ
RPNAAIHMKFAHFDGEWMSVLDEKSDERIDVYCPPALREFISRAPRNGAYVLAKNLTEPRGYWSISSSFR
TWRDALGPEAKKYVLHGLRKLSIIRLAEAGCSDAEIQAVTNQSAEMVAYYRSRASRKALSRAAQERRK
>gi|99081534|ref|YP_613688.1| tetratricopeptide TPR_2 [Ruegeria sp. TM1040]
MRACLGLIPRHFFDMVIRCCVPALVFFCVGSVAVASECPAAPDHSGPISELLEDVQSAANEQEAQRINTQ
LWEYWADAPDERAQEILDSGMSRREVYDFVGALADFDRLVDYCPNYAEGYNQRAFVHYLRRDFAAALRDL
DRALALSPRHVGAMSGRALSLLGLSRIAEAREALRAALDLNPWLSERHLLAPGAPLADESIDL
>gi|99081535|ref|YP_613689.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MQSRFPGLDRFDQAILRELSHNGRTSISDLARAIGLSKSPTQARLKRLESEGIIQGYRAMIDPIRLGLDH
VAFVEVKLTDTREAALASFNAAVVQVAEIEEVHMLASHFDYLLKVRCRSMSDFRAILGEKISSLPHVSST
STYMSMQSVKDDAGLGPI
>gi|99081536|ref|YP_613690.1| bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase [Ruegeria sp. TM1040]
MTRDMRLRDRIDAGTYLDQANMRDALVALAALSEADRSAICASATQLVKDIRGHSSPGLMEVFLAEYGLS
TDEGVALMCLAEALLRVPDADTIDALIEDKIAPSDWGKHMGKSTSSLVNASTWALMLTGKVLDEEKSPVG
ALRGAIKRLGEPVIRTAVGRAMKEMGRQFVLGETIESAMKRASNMEAKGYTYSYDMLGEAARTEADASRY
HLAYSRAISAIASACTSTDIRENPGISVKLSALHPRYEIAKEESVMQQLVPRLKALALLAKAAKMGLNID
AEEADRLSLSLEVIEEVISDPALKGWDGFGVVVQAYGPRTGLAIDALYEMAEKYDRRFMVRLVKGAYWDT
EIKRAQVEGMDGFPVFTSKALTDVSYIANARKLLSRTDRIYPQFATHNAHTVSAILHMAEEGQAYEFQRL
HGMGETLHQMVMDQNKTRCRIYAPVGAHRDLLAYLVRRLLENGANSSFVNQIVDEDVPPQVVAADPFQEV
DDLTTDIPTGPNLFQPERINSKGFDLRHAPTLAAIEKARAPFREATWDAVPLIAGEAQPEARVAVTNPSD
LSEIGSVSQSSAEDVELALASANTWDAPAEERAAALNKAADLYEAHYGELFALLAREAGKTQMDAVAELR
EAVDFLRYYASRIPDAAPAGIFTCISPWNFPLAIFTGQVSAALATGNAVLAKPADQTPLVAFRAVELLHE
AGVPRDVLQFLPGRGSKVGAAITGDARINGVAFTGSTATAMRIRSAMAEHCAPGTPLIAETGGLNAMIVD
STALPEQAVQAVVESAFQSAGQRCSALRCLYLQEDVAEDVLTMLKGAMELLDLDDPWHLATDSGPVIDEG
SRAKILAHIDEARAEGRVLKEMQAPQSGTFVAPTMISINGISDLKEEIFGPVLHVATFKSRELDAVIDAI
NATGYGLTFGLQTRIDDRVQHVCDRIHAGNIYVNRNQIGAIVGSQPFGGEGLSGTGPKAGGPNYLARFCA
PDRRQVDAAWKDTMGEIPAARGQAGHPETTSLPGPTGESNRLTVSARPPLLCAGPGAEAVSEQAKLVASL
GGIAIEADGMVDLHRLAHMDGISGVLWWGDADTGREIEQSLAKREGPIVPLIPGAPDRARVLAERHVCVD
TTAAGGNAALLGGNA
>gi|99081537|ref|YP_613691.1| rhomboid-like protein [Ruegeria sp. TM1040]
MFPLRDHNPSGRTPYVVYLLMAANILGFLWYSTSFPTDRSLALFYASFATVPREITMGEGTLTLLTSMFI
HGGIMHLAGNMLFLWIFGDNMEDEMGHLPFLAFYLICGVGATLAHVWSAPLSMVPLVGASGAIAGVMGGY
LLMFPKARVDILIILIIFFRIIPIPAFIMLGLWLAMQFFGGLNADPNLGGVAYWAHAGGFFVGLALTVPL
WIIRGGPRFWSRTQGHPPHPGTSYSASRIPRVRRRNTPPRSGPWGK
>gi|99081538|ref|YP_613692.1| glutathione-dependent formaldehyde-activating, GFA [Ruegeria sp. TM1040]
METHTASCHCGAVEISARFPNGLASASRCDCSFCLRRGAAAVTATTESLQILRGAENLSLYTWGTHTAQH
HFCKTCGIYVYHQRRSNPAECGVNLGCIDTGNPRTHAEIYGEIPWRDGVNHPSDTDGD
>gi|99081539|ref|YP_613693.1| inositol monophosphatase [Ruegeria sp. TM1040]
MIGSANLNVMIKAARKAGRSLVKDFREVENLQVSTKGAGDFVSRADIAAEKILKDELLGARPTYGWLAEE
GGEIPGEDPTRRWIVDPLDGTTNFLHGLPHWAVSIALEHKGKIVAGVVYDAAKDEMFFAEKGAGAWMNET
RIRVSARHRMIESIFATGLPFAGRADLPETLQDLARLMPACAGVRRWGAAALDMAYVAAGRYEGFWERRL
NAWDLAAGIIIVKEAGGLCEALDPSESIIESGEVICANEPIFENFTKVIRG
>gi|99081540|ref|YP_613694.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MHIEFRHLRTIKAIHEAGGLARAADQLNITQSALSHQIKGLEEQAGVELFLRRSKPMKLSAAGLRLLRLA
EQILPQVESAQAEFAALREGEAGRLHIAIECHACFEWLFPVLEGFRKSWGDVDVDIRPGLAFEAMPALMR
EEVDLVVTSDPEDMPGVSFIELFDYNPVFVASAQHALAAKPYVEAEDFRGQTLITYPVERTRLDVFSQLL
IPAGVEPASIRKVELTAVILLLVASNRGVSVLPDWVVREVKYSSDYVTRPLTKLGITRRLYAAIRSEDES
KPFMQELIRLARVEARKLQQV
>gi|99081541|ref|YP_613695.1| 5,10-methylenetetrahydrofolate reductase [Ruegeria sp. TM1040]
MTTPEISFEFFPPKNLEASFRLWDTVQSLAPLAPRFVSVTYGAGGTTRELTRDAVTTLHKNSGLKVAAHL
TCVSATRQETLDIADQYAAAGITDIVALRGDPPKEEGRFTPTADGFNSSVELIEALAATGKFNLRVGAYP
ESHPEAASQAANVEWLKRKLDAGADEALTQFFFEAESFFRFRDACAKAGIDTDKITPGILPIENWKGVRR
FAEACGTTIPAWLDEAFEKADRDDRCDLLATALCSELCTELLDGGVKKLHFYTLNRPELTRDVCHALGVK
SKARLQNVA
>gi|99081542|ref|YP_613696.1| phenylacetic acid degradation-related protein [Ruegeria sp. TM1040]
MAVAETPSDLLPIEKVAQISGLDFMTAILEGRLPGPPIGETLGFSLKSVEPGRVVFRGAPEFNVTNPMGT
VHGGWYGTLLDSAMACAVMTRVPKGSVYTTLEFKINILRSIPLGMSIDCWGEIDHVGRTTGIAHGEIRGV
EDGKLYATGSTTCIVMKVAP
>gi|99081543|ref|YP_613697.1| hypothetical protein TM1040_1702 [Ruegeria sp. TM1040]
MKPRVFIAAALCAALLGAFVFWRLLDHDLERRAQTTFEFRTLEGQIAGTLWLPDEPLRAAVVLVHGDGAQ
DRTASGGYAPFINALLDRGIAVAAWDKPGIGASEGDWQQQSMQDRALEVRVALAQLEAAIAEVPIGALGF
SQAGWVLPKLEPGAADFLVLVGPAVSWQAQGAYHTRVRFERAGYTRAAIAQALEASAAQDKTLFAHDIPP
SPLPAGMTPARWGFIQVNRNSDASADLAALELPLMAIWGAQDLNVDAVRDFDRYRSLRAAAAAETKLQLW
PEATHGLLRAKTYNYQSFDEWSWFAHARFMLAGRGAYAPGALDAIADWILARSS
>gi|99081544|ref|YP_613698.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MANSNQMGQKVSIEASIRPEHRAQAARGYWQAFARKLRYPLGPASKAMAFFERVIDPEHALSAVSDTGDF
LGAAGFKTSTGSFIGGHFNDLSRVYGSIGATWRGLLIHTLERDCEEGTLLMDGIFVEPEARGLGVGTKLL
HALMNRAESAGLQRLRLDVIDTNPRARALYEREGFVPGHEKKLGILAPLFGFSTATEMVKTLRPVQL
>gi|99081545|ref|YP_613699.1| hypothetical protein TM1040_1704 [Ruegeria sp. TM1040]
MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRLCKEMGPRVSV
YYEAGVQWNAWSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYSRGAYAARSLAGMLGAVGLVK
TEHATVRHIRTAYRHYQMGSGHEVRQAFRNAHCHPEIQIEMVGAWDTVKALGIRLPILWRWSQVQHAFHD
QKLGDHVRAGYHALAMDETREAYAPVLWQTSPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVW
MLERAEMSGLPLPRDWRMRFPVDPDAPSVGTWSGWGKIFLIRSRRKIGLDPSERVHPSVQIAKKPNKTAG
WLGIFMRQTRL
>gi|99081546|ref|YP_613700.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein [Ruegeria sp. TM1040]
MNQRVEKFGKSQPLARVEDQRLLTGQGRYIEDTMPAGALRAYVFRSPVAHGEITTLNVDDARAAEGVHLV
ITQADLVDAGIEATLDGALVKNIDGSKAAAPERPVLAGHRVRYVGEPVAVVIADTMDQARDAAELIEFDY
EDLDVKLDLAAGGAEIHPEAPQNRAFNWGLGDKAATDAAFEAAAHTVSLQVDDNRIIVNAMEPRGCHATW
QDGRMHFYYGGQGVWSMKEQLAKKMHLPAEDVHVVTPDVGGGFGMKAMPYPEYFAVAYAAKVLERPVGWM
SDRTEAMLSDNGGRDLTSLAELAFDADLKITAYRVHTHCNLGAYNSHFGQPIQTQLFSRVLAGVYDIQTA
WLEVDGIYTNTTQVDAYRGAGRPEAIYVLERVIDRAARDLGVDPMDLRRRNFIAPQKFPYKTVTDETYDV
GDFNLVLDRLIKESDLAGFEARRAQDAAEGRYRGAGLCYYIESILGDPSETADVEFLEDGRVNIYVGTQS
NGQGHETVFATFLADQTGIPVSAISVVQGDSDRIAKGGGTGGSRSVTTQANATLATVDKMVAAFTPFLAE
EMGVDEEAVDFDGETFRAPGSNLTPTVLEAADLAREKGRVDLLRHQAEASLPGRSFPNGAHLAEVVIDRE
TGQARVDRYTVVDDFGNLINPMLAEGQVHGGVAQGLGQAMLEHVVYDADGQLLTATFMDYAMPRAEDMPW
VDFTSEPVPSTQNPMGMKGCGEAGTVGALAAVANAVQDALWDQGIRQVDMPFTPVKLWELMRDVSQAAE
>gi|99081547|ref|YP_613701.1| valyl-tRNA synthetase [Ruegeria sp. TM1040]
MACTYILQDVTHGASDMALDKTFNAAEAESRLFDAWEKAGCFTAGANAKPGASTYCIMIPPPNVTGVLHM
GHAFNNTLQDILIRWKRMQGYDTLWQPGTDHAGIATQMVVERKLAETQQPSRRELGREKFLEKVWEWKEQ
SGGTIINQLKRLGASCDYERTAFTMAGAQGDTRTGHENSPNFHDAVIKVFVEMYNKGLIYRGKRLVNWDP
HFETAISDLEVENIEVAGHMWHFKYPLAGGETYTYIEKDEDGNVTLEEERDYISIATTRPETMLGDGAVA
VHPSDERYAPIVGKLVEIPVGPKEHRRQIPIITDEYPDKDFGSGAVKITGAHDFNDYQVAKRGGIPMYRL
MDMKGAMRADGAPYAEEAAKAQAHAKGAAFTENEVDAINLVPDHLRGLDRFEARKLVVQEITDEGLAVMQ
TVTKTVKDDEGNETEVSEVVPMVENKPIMQPFGDRSKVVIEPMLTDQWFVDAEKVVGPALDAVRNGDVKI
LPESGEKTYYHWLENIEPWCISRQLWWGHQIPVWYGPEKDLPDPFDKNKVATKAFCGASKEEILQQAKDY
YGEDVQVSIGEDGFEFIATPDAVILESVQLRRDPDVLDTWFSSGLWPIGTLGWPEWTEETSKYFPTSTLV
TGQDILFFWVARMMMMQLAVVDQIPFDTVYLHGLVRDAKGKKMSKSTGNVIDPLEIIDEYGADALRFTNA
AMASLGGVLKLDMQRIAGYRNFGTKLWNAVRFAEMNEVFTDAVPQLTVDDLAPKAAVNAWIVGETARVRE
AVDEAMETFRFNDAAQALYGFVWGKVCDWYVELSKPLLQGDDTEAQAETRATMRWVMDQCMILLHPIMPF
ITEELWGATGPRAKMLVHADWPTYKAADLVKPEADAEMNWVISVIENTRSARAQMHVPAGLYVEMLVTEI
DAAGQAAWEANETLIKRLARIESLSKIETAPKGCVSISAPGASFLLPLADIIDIDGEKARLEKSLGKLAK
ELGGLRGRLNNPKFIASAPEEVVEEARENLAAREEEETKLKEALSRLAEIG
>gi|99081548|ref|YP_613702.1| hypothetical protein TM1040_1707 [Ruegeria sp. TM1040]
MAKGYWVAHVDIDDMERYKAYIDANAAPFREYGARFLVRGGAKEVREGQTRARTVVIEFKDFATAKACYD
SLAYQEAKALRDPVSTGDMEIVEGYDG
>gi|99081549|ref|YP_613703.1| hypothetical protein TM1040_1708 [Ruegeria sp. TM1040]
MLKKLFQAFRPPQSPNLPDPDAELALGALLVRIAQSDRAYLLEEISLIDRILARLYGHNALEAAKVRATC
EKLHAAAPETDTFGRLIRETTGLEERLAALDALWEVVLADNREHEGEIRIVEDACKAMGLSVIDNKRARD
RARAKLATQPTE
>gi|99081550|ref|YP_613704.1| hypothetical protein TM1040_1709 [Ruegeria sp. TM1040]
MIFKDFLDKLLAPAPSILPDEDARLALTALLVRLARSDNVYSDSERDRIDRILRSRFALDAGAAQILREQ
GEGLEAEAPDTVRFTRAIKEVVPYEERTGVVETLWEVALSDGKRDVEEDALIRLAANLLGVNDVDSAMAR
KRAEAHA
>gi|99081551|ref|YP_613705.1| hypothetical protein TM1040_1710 [Ruegeria sp. TM1040]
MIASLPMYDRPETAAANDAFWAAIRAELGHGPESLTRDMDLWQVWRAPDLLLAQTCGLPYRARLYGDVEL
VGTPDYGLPGCPEGHYNSVLIAAADRKGTPLRDFAGTRFAYNDSLSQSGWAAAMMRMRADDMLPGELIET
GSHQASAVAVAEGRADFASLDALTYQMLLDYEPDLMAGLCELERTEPTPALPFITALTQDATILRTAMER
ALEALEPEHRETLHLKKIVSTTPSDYLAVPTPPGPTLVMDRLARAR
>gi|99081552|ref|YP_613706.1| ABC transporter related [Ruegeria sp. TM1040]
MTDDTPVLEIRGLHKSYGDLEVIKGVDITAKRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGDILFKGEP
ITWSGSGIARQPADAKQVLRIRTNLSMVFQQFNLWSHMTILQNVMEAPLTVLKRDRDEVEKSARKYLDQV
GIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAKEGRTMLIVTH
DMRMAADVSDHIVFLHKGLIEEEGCPDEIFGNTRSERLRAFLSSTRQAQ
>gi|99081553|ref|YP_613707.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKSLLLGSAALALSATFAMADTIRLGTEGAYPPYNFINDAGEVDGFERELGDELCKRAELTCEWVTNDWD
SIIPNLLSGNYDAIIAGMSITDERKEVVSFTEGYTKPSPSAYAALSEGVDVNASVVAAQSGTIQAAHVAE
TGATLVEFPTPDETIAAVNSGEVDVVLSDKDFLAPIVEESDLVFLGDVYLGGGIGMAFRQSDDEMRGKFD
AAIASMKEDGSLNELLDKWEIEGKF
>gi|99081554|ref|YP_613708.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MTRPAIFSYCSDPATLEGLQWLSCYLTTGKHWAFYMSFGTVLLLLAVTAPMALAFGFFGASAARSRVLPL
AWFGKGYIAVVRGVPDIAFFLFFVIALDQGIEWLRHQVKCPDWDEPIRQGNDFIVCQAAKMPLNTDPQWF
HEIYGFSLAVLTFAIVFGAFAANVLFGAMRAVPRAQIETAEAYGMTPRQTFWRVLVPQMWVYALPGLSNL
WMVLIKATPLLFLLGVEDIVYWARELGGSKTTRFTDYPHGDWRMWYFLGLLVFYLAFTKVSEIVLARISR
RLSHGQATLAGEAQRKAEGAAT
>gi|99081555|ref|YP_613709.1| amino acid ABC transporter permease [Ruegeria sp. TM1040]
MSCFETFQAYALRSIGIGERLLPRSDFTLCDQFVLIGSGLIWNVYFGAIAIFTGFFFANALAVAKNSHKR
WLRAPANGFIFVFRGSPLFIQFFFAYFVFLSLKSVSPIFDPLSAAWLGALIVLFLNTSAYSAEIFYGALR
SIPKGDLEAADAYGLSGWSRFRRVIWPTMMRLAWPAYTNEAIFLFHATTLVYFSGFPAWRQKGDALYYAN
YFADKTFNPFVPYPILAFYFILLTLAIIAVFGMINTRLNRHMPQELRRKIRVRPQLMR
>gi|99081556|ref|YP_613710.1| Poly(R)-hydroxyalkanoic acid synthase, class I [Ruegeria sp. TM1040]
MTTTDKSIEASSAEQIDQLKENLVRVEQLSKRLIEVLAQKKGHNPGLDAPNQELFARAASSYWAAMAQNP
TRLLEQQVQYWGKSVQNFAEAQQAMAQTLAAAQNEEGETTERPAVNDRRFANPMWETNPYFRFLRDQYLT
NAEAIRTAVDEVEDLDRVDRQRLGYFADQIINMMAPTNFLATNPDALEKALETDGQSLIDGLENLVADLE
ANDGELIVRLADENAFEIGHNIATTPGEVVYRNRMMELIQYHPTTETVHETPIVLFPPWINKFYILDLKE
KNSLIKWITDQGYSLFVVSWINPNSDYADVGMEDYIEEGFLKAIEVAKEISGTKQVNAVGYCIAGTTLSL
TLSLLKQRGDKSVKSATFFTALTDFSDQGDFTPFLQNDFVDAIEAEIGEDGIMPHYIMARTFSFLRANDL
VYGPAIRSYMMGETPPAFDLLYWNGDGANLPGKMAVQYLRGLCQDNKFVTDGFELFGHTLHVRDVDVPLM
AITCETDHIAAWKQCYRGVQQMGSRSKSFVVSQSGHIAGIVNPVSRNKYGHYVNGDLSLDADDWMEGAEF
TEGSWWPRWEAWLKKRSGKQVPARVPGAHKSYPVLEQAPGNYVRAKARG
>gi|99081557|ref|YP_613711.1| polyhydroxyalkanoate depolymerase, intracellular [Ruegeria sp. TM1040]
MRYMMSYDLMETVRNANQWLGATALSMASYPANAALPNPMLSWMAAWGQVTERSFERMVTKPDWGIPATT
LPDGKDHLVEVDTIVEKPFGDLIHFRVTDRAEQPRKVLVVAPMSGHYATLLRSMVKSLIENCEVYVTDWH
NARDIPVSAGKFDVEDYTLYLVEFMRELGPDTHVVAVCQPAPLTLAATAYLAEIDPKAQPSSLTLIGGPV
DPDATPTDVTDFGRRVTMGQLEQTMIQRVGFKYKGVGRKVYPGLLQLASFMSMNMDRHSKAFSEQIMRVC
RGEATDHDAHNRFYDEYLAVMDMPAEFYLSTVERVFKQREIAQNAFTVQGHKIDIGKITDVAVKTVEGSK
DDISAPGQCIAALDLCTGLPDSKKASHVEPGAGHYGIFAGRSWRNNIRPLVIDFMDANARQPVRKQPKKT
AAK
>gi|99081558|ref|YP_613712.1| hypothetical protein TM1040_1717 [Ruegeria sp. TM1040]
MSDAPSEPLGFSCACGALSGHIEAASVKQGTRLRCHCTDCRAVELYHGSPDPKGSGVDLLQLNPDMVVID
RGADQLHLLQLSPKGLYRWYAGCCGTPLFNGLRNPRLPFIAVRTALFSEPDRLGRVVAEAFIPQPGKPPR
HKGAARMTMKLASRMISAWVSGRWRQTAFFDGQSGRPVAEPHVLSKAERRALTADKQ
>gi|99081559|ref|YP_613713.1| alpha/beta fold family hydrolase/acetyltransferase [Ruegeria sp. TM1040]
MLSRHVPVTIAPVLNADRIEDVAATLLTHMPEKFTVLGAGLGGSIAMAMLAAQPGRIAGIGLIGSTPLPE
TPAKAAEREPWIIRARTGRLRGVMEEVIPTSSLAPGPLRHQIMGQLADMAEDLGPDVFVSQSRMLQRRRD
QQATLRRASQPGLVICGVHDQITPVKRQMITAELMQNARIEMIEDAGHVPLMEQPERVSAILHNWIIGDH
AVCPLTGELAEPVDEPLWVSRRSRRQTAAPVIAHADTPMQELSEDVLHLSANYRASA
>gi|99081560|ref|YP_613714.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MEQRISLITLGVQDVEASAQFYEQLGWTRAESPDGVVAFDLMSQTLGLYALDKLAEDLNLPIEALGTGAM
TLSHNVRDAEEVAPLLARAEAAGAAILRPAGPVFWGGTIGYFQSPDGHIWEIAHNPYSALSPEGAFRWNG
Y
>gi|99081561|ref|YP_613715.1| hypothetical protein TM1040_1720 [Ruegeria sp. TM1040]
MAPQYLETSEGRRIAYHKTEGQGPCVVFLGGLKSDMEGTKAVFLEDWAKARGQAFLRFDYSGHGESSGRF
EEGCIGDWHADTLAVVDGLTEGEIVPVGSSMGGWQALLLAKARADRIKGMVTIAAAPDFTEDGYWANFTV
AQKEELESQGHVELPSDYMEPYIVTKRMVENGRENLVLREKLDLPFPVRCLQGTDDSAVSTETALRLLEH
ADCADMRLTLVKDADHRFSDEACLALIASAVEQVCAG
>gi|99081562|ref|YP_613716.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp. TM1040]
MAQISLTFPDGNARSYDAGITPAEVAADISTSLAKKAISATVDGQHWDLQWPVTQDAAIAIHTMKDEAQA
NELIRHDLAHIMARAVQEIWPDTKVTIGPVIENGWYYDFDRAEPFTPEDLGTIEKKMKEIINKREPVTTE
VWEREKAIQYYTDNNEPYKVELIDSIPGDEPLRMYWHGDWQDLCRGPHLQHTGQVPGDAFKLMSIAGAYW
RGDSDRQMLQRIYGVAFTGKEKLKAHLTMLEEAAKRDHRKLGREMNLFHMQEEAPGQVFWHPNGWRIYTT
LQDYMRRMQDRDGYVEVNTPQVVDRKLWEKSGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQV
FNQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCTEDQITSETAKFIAFLSKVYAD
LGFDNWTIKLSTRPEQRIGSDETWDNMEQALGDACKAAGYDYEILEGEGAFYGPKLEFTLTDAIGRNWQC
GTLQVDANLPERLEASFIGQDGSKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASITSE
ADDYVNEVVETLRAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGHREVEERTVSVRRLGEKQTKVES
LTNVTEELAKAATPPDLL
>gi|99081563|ref|YP_613717.1| hypothetical protein TM1040_1722 [Ruegeria sp. TM1040]
MSTTTKTLAVAGAVAAALTAVTTSHASAQAKEKCYGVSLAGQNDCAAGPGTTCAGTSTVDYQGNAWTLVD
SGTCTEMELPAMADGTARAGSLEPLERDLPA
>gi|99081564|ref|YP_613718.1| hypothetical protein TM1040_1723 [Ruegeria sp. TM1040]
MTDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPISVHGVGLSIG
GEGPLDPEHLARLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDATLARICDHIDMVQTLLGRRM
LLENPSSYLAFAESTWEEPAFLHEIAKRTGCGLLLDVNNVFVSATNLGYRPQDYIDAYPLDLVGEIHLGG
HDEDEDDHGRPLLIDSHGAEVVDPVWSLLSYTLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAK
VAA
>gi|99081565|ref|YP_613719.1| hypothetical protein TM1040_1724 [Ruegeria sp. TM1040]
MTREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLLGKENMDGLAA
LFLRAHPPSSPLMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSYHAADAAPLDPARLAALSSEA
LMQSRLTFAPAMTVLRSSWPIHAIWRYNTEDSAPKPQPQAEDVLITRPDFDPIAQPLPKGGAVWISALQA
GETLGDATEAATHDFPEFDLSVPLTLLIEGLALTDLSQ
>gi|99081566|ref|YP_613720.1| DoxX [Ruegeria sp. TM1040]
MTALISLHNAVFNLVERLGDWLMPLFARFTFAAVLLLYYWNSGLTKLGDGLFGLFSPSIGAYSQIFPKQL
EAVGYDVSQFGLLQWVVVMAGTYAEFLLPLLIVIGLATRIASLGMIGFVVVQSLTDVYGHGATDTKTLGA
WFDRFSDSVIMDQRLLWVFVLSYLVVKGAGALSVDAVLRARHHHAQD
>gi|99081567|ref|YP_613721.1| arsenate reductase and related [Ruegeria sp. TM1040]
MKLYGLKTCDTCRKALKSLPDADFKDVRTEGVPADIMAQAYAQFPDKLLNTRSTTWRGLSEEDRAKPPLE
LLAEHPSLMKRPLIEAEGQLHLGWTKDVQAALGVT
>gi|99081568|ref|YP_613722.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040]
MPTGTVKWFNTTKGYGFIEPEEGGKDVFVHISAVERSGLTGLADNQKVGYELTEGRDGRQMAGDIRPL
>gi|99081569|ref|YP_613723.1| dihydrofolate reductase [Ruegeria sp. TM1040]
MITLIVARARNGAIGKDNDIPWHAPEDLKAFQRETLGGAIIMGRNTWDSLPFKPLKNRFNIVVSSNPDAA
DTVVASLDEAIDLARSEGYARLYGIGGAGIYKGMLARADRLMITEVDLEIDDADAFFPEFPPEEWRVNAT
LPLRAEDPACVLTEYLRLPRAQG
>gi|99081570|ref|YP_613724.1| thymidylate synthase [Ruegeria sp. TM1040]
MQQYHDALQHILDHGVETTDRTGTGTLSCFGMQQRYDLAEGFPLVTTKKLHLRSIIHELLWFLSGDTNIR
YLKENGVSIWDEWADENGDLGPVYGYQWRKFPRLELAEGTLGDEPLYRAGTVDQISELLDMIRKSPDSRR
LIVTAWNPGDVPDMALPPCHSLWQLRILGGKMHLQLYQRSADMFLGVPFNIASYALLLHMLAHVTGYEVG
SFVHTMGDAHIYSNHMEQVKLQLSRSPKSLPQLRIARDVSSIFDFKYEDFEILGYDPDPVIKAPVAV
>gi|99081571|ref|YP_613725.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MPLKYLHTMVRVKDLEKSMAFYALLGLKETRRYDSEAGRFSLIFMAPPGQEEAPVELTWNWDGDDELPSD
SRHFGHLAYEVDNIYETCQHLMDNGVVINRPPRDGRMAFVRSPDNISIELLQAGDALPPAEPWSSMENTG
HW
>gi|99081572|ref|YP_613726.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MSMERPISQLDRKGFMTGYLDALALVERLHRLLLDVIKDEFERVGVLDINAVQALLLFNIGDNEVTAGEL
KTRGYYQGSNVSYNLKKLVEMGYMHHQRCEIDRRSVRVRLTPRGREIRDIVASLFSRHAEGLETKGVISA
EGIEDITGSLKRMERYWSDQIRYIY
>gi|99081573|ref|YP_613727.1| hypothetical protein TM1040_1732 [Ruegeria sp. TM1040]
MIEAQANIEESRETRIKRLTMRSMRRGIKEMDILLSGYAAANLAAMSDAQLALYDALLRENDQDLYQWVT
GQTPAPERFNALVDEISRTYQK
>gi|99081574|ref|YP_613728.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MTDTTSDWYGPDAATFGDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLSGILNVS
MSWLLTGEGDELSAPNEDTLGEDMAAIARELRSLREELRQQAERAGRLEKSLRRLVATQEAAE
>gi|99081575|ref|YP_613729.1| aspartate aminotransferase [Ruegeria sp. TM1040]
MSVLSATLSRVKPSPTIAVTNKARELKAAGRDVIGLGAGEPDFDTPQSIKDAAVRAIAEGKTKYTAVDGI
PELKQTICEKFKRDNGLDYRPEQVTVNSGGKQTLYNALMATLNPGDEVIIPAPYWVSYPDMVLLAGGTPV
PVEASLESSFKLTPDQLEAAITDKTKWFIFNSPSNPTGAGYSRAELKALTDVLMRHPHVWVMTDDMYEHL
AYDDFEFCTPAQVEPGLYDRTLTCNGVSKAYAMTGWRIGYAAGPETLIAAMRKVQSQSTSNPCSVSQYAA
LEALTGPQDFLASNNEIFVRRRNLVVSMLSEIDGLTCPVPEGAFYVYPSIAGLIGKTTPKGVTINSDEDF
ATALLEEADVAVVFGAAFGLSPNFRVSYATSDDALKEACTRIQRFCASLS
>gi|99081576|ref|YP_613730.1| hypothetical protein TM1040_1735 [Ruegeria sp. TM1040]
MTTALPEYYFRVRENGAMVFRLDTENRNRRIEMDQIAVINLKKGEIKPHGDRSLSAEDLSAIEAWMEERR
TLLAQREMDDILRAVDHLNLTAQWAQSRASDAQLERVTDTLLMAMHDLRSVLVRKKADRLAKAEKASG
>gi|99081577|ref|YP_613731.1| MATE efflux family protein [Ruegeria sp. TM1040]
MARIDPTPQMSYGGHIRAVSILGLPLIGGHLAQFAIGLTDTVMLGWYGVNELAAVTLAGSFFFVWFILGA
GFAFAVMPMVASATATDDHRRIRRATRMGLWLSIVYGVLSMPLMWYSETILLAAGQEAQVAADAGTYLRI
AGWGIFPALLVMVFKSYLAGLERTQVVLWITVLAAVINAIVNYVLIFGHLGLPEMGLQGAALASLATQTV
SVVAVVAYALWRLPEHDLLRNLQRPDWEMMREIVRHGLPIGLTTLCEVSLFSASALMMGWLGTVPLAAHG
IAVSVAGLTFMAHLGLSNAATIRVGNALGRGDKTHMVRGAIVVTLASLGIAVATAMVFFLAPEPLILLFL
DPEDPQKTEILAIGVSLLAMAGLFQLMDGMQAIALGLLRGLLDTGVPMVMAALSYWAVGVPTSYILGFRA
EMGGVGVWIGLILGLSTAGVLLLLRFWFHALRRVPTAPTGEMRADEIMADPV
>gi|99081578|ref|YP_613732.1| high-affinity nickel-transporter [Ruegeria sp. TM1040]
MRHLPGIVLAITLVALAALAIWLWGLGGADHILRAASEAQRDAQNAMARGLRALKGGQPGAWWGLMGVCF
AYGFFHAAGPGHGKLVIGGYGLGSAVTLWRLSALAVASSLAQAATAVLLVLSGVWLFDWGRERLTATAED
LLAPVSYALMALLGLYLLLRGLRRGWRLRAAEAGPHAHADHHHVPAGTGGAQDHAPVALQSVGTHHNHHH
DHQHHDHDHHDHHDHGHNHHAHGPGEVCASCGHRHGPTLQEAASLRSWREAVAIILSIAARPCTGAVFLL
LLTWRLDVLGAGVAGTFAMGLGTASVTLCVALLAAGVRGGLLMRVLSAGGNRGAQMAAALEIAAGALVLA
LCLQLLLRSL
>gi|99081579|ref|YP_613733.1| hypothetical protein TM1040_1738 [Ruegeria sp. TM1040]
MIRTFATLAVLAAPLPVLAHPHIFVDSGLKLEVDAEGFLKAAEVTWVYDDFYTLLVFEDMMLDSDFDGAL
TPAELERLKGFDLNWVEGYEGDLYLTQRDTQLSLGAPEHLSTEVRDGVIITRHRRPVTEPVPVLANGVTA
RMYDPTYYTAYDLNRGVEITGPCAAQVTPPNLDQAYTLVEELLYSMPTEQAEDAFPEVGSAFASTVAVAC
EG
>gi|99081580|ref|YP_613734.1| hypothetical protein TM1040_1739 [Ruegeria sp. TM1040]
MAWIKTVAFGDATGKLRKLYDRVTGPGGNVDNIMMAHSLRPHTMEGHMALYKNVLHHSGNELPKWVLEMI
GVWVSSLNGCAYCVEHHFAGLKRLMRDDARAEAIRAAIEARDIKALPVRACEMAAMDYARKLTQAPTEMM
AADLEPLRAEGLSDGHILEINQVVAYFAYANRTVLGLGCSTEGDVLGLSPGNSDDPTDWGHA
>gi|99081581|ref|YP_613735.1| DNA topoisomerase IV subunit B [Ruegeria sp. TM1040]
MRHNEIKPHQRMSSDPHMADDLLSPSSSDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILD
NSMDEAVAGHANRIEVELHADYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGG
LHGVGSSVVNALSDSLVVQVAKNKELFEQRFSRGKPLGGVEKIGAAPNRRGTTVTFHADEQIFGSHRFKP
ARLFKLVRSKAYLFSGVEIRWKSAIDDGETPQEATFHFPGGLRDYLTEVLGKSSVYADAPFAGKVEFREK
FGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAGFWSAILKGIKAYGELVGNKKAGQITRDDLMA
GGCALVSCFIADPAFVGQTKDRLSTEAAAKMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRQ
EKETARKSATKKLRLPGKLTDCTSKDRSGTELFIVEGDSAGGSGKGARNREYQALLPLKGKILNVLGAAS
GKLTSNAEIRDLCEALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYL
ACPPLFRLTQGAKRVYCLDEAERDMWMEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPKTRKLIRVTI
DEDEPGETSDLVERLMGKKPELRFQYIQENAKFVEELDV
>gi|99081582|ref|YP_613736.1| cytochrome c, class I [Ruegeria sp. TM1040]
MRRFLAIATCLVASGAMADHELEGRDLDRGQALYGDYCAACHGANLEGQPDWQTPGADGVLPAPPHDETG
HTWHHDNQLLFDYTKQGGAEALAARGVSGFPSGMPAFADSLSDEEIWDILAYIRSTWPKRVQDIHADRNP
RHD
>gi|99081583|ref|YP_613737.1| copper resistance D [Ruegeria sp. TM1040]
MPDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAGLGFSLQGAAL
TGGLDGMTDPEMLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGALAGGCLLLWSFAQVGHVPNLA
QTGVQALLFLHLLGVAFWIGVLSPLHWLCQRRDHLQAAAQLGHRFGQIAQYGVPALVGAGAVLGALLLGS
VSALLGTSYGLAFVTKIALVGAILALAAANKLRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAAL
TSLFSVPG
>gi|99081584|ref|YP_613738.1| copper resistance protein CopC [Ruegeria sp. TM1040]
MKTMKKTALIVWLACISSGAFAHSRVDTTTPADGDVMSEVPAQISFDFADDIRLTRVEMTHAEHPSVQLD
LGDQKSFDRAFNLPLNDMGAGTYQIEWRGLSIDGHAMQGGFTFEVE
>gi|99081585|ref|YP_613739.1| cytochrome c, class I [Ruegeria sp. TM1040]
MNQKYLILGASVALAAAAFVFLRPEASGTAARSPSGDTASLAAITIPDLAGNQIVGRNIFETSCAACHGA
QGGGNPEAGPPLIHKIYEPSHHGDESFQRAVANGVRAHHWHFGDMPPVEGLTRGNVAMVIDYIRAVQRAN
GIN
>gi|99081586|ref|YP_613740.1| hypothetical protein TM1040_1745 [Ruegeria sp. TM1040]
MSILRAIFAIPLIALFLIGPLIESAAHAKGAGCLNVQCCDRGPEETLVSKTEVSKTDPSTQMEASAGDDL
AMKGTCALMACQAAALVGVPAMVHPLTFQTSSWVQIDLSPLSQGPSALDRPPNS
>gi|99081587|ref|YP_613741.1| hypothetical protein TM1040_1746 [Ruegeria sp. TM1040]
MNGFGRQFFRMAAVSFGGAIASFSGPSEAAAQEQRFAAYITGYGFWDNTPPGSVAISHPVKHRRAGGIGT
YRDPITLAVGHTLKGRRDILDFPAGTVFYLPRLKKYAIVEDTCGDGPRPQDGPCHTGARGYPWLDLWVGG
QTVSPAQSEKCQYKITAVQMVYLDPKPNYEVYPGEVIASGCAVH
>gi|99081588|ref|YP_613742.1| diguanylate phosphodiesterase [Ruegeria sp. TM1040]
MLRDKRIALWTRVSSPSCHKEELRDGREMTLTDTEKCKACRNGKGFEVPISMAFHPIVSVGSGKVFAYEA
LVRGQDGSGAAQVFEQVNDDNLYAFDQKCRKTAIEHASRLDLGDTGSLLSINFLPNAVYDPKACIRLTLE
TAKKTGFPVSQIMFEFTEVERISAPHLLDILSTYRRLGFLTSIDDFGAGYAGLDLLSRFQPDVVKLDAEL
TRNIDQSSVKQTIVRHVISMLEQLGIIIVAEGIETQGEFSCLYDLGVDLMQGWLFAKPGFETLPDVRWPD
ALRSVEESKTA
>gi|99081589|ref|YP_613743.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MHLCMNWSAINFDWNQVRSFLATAEEGSFSAAARVLNQTQPTVGRQVGALEEALGVTVFERVGKSLRLTT
AGTELLVHVREMADVANKISLTATGQSQSVEGQVRITASDVMSTYQLPAMLKQIRLAAPRLEIDVVAAND
LRDLHRREADIAIRHIRPTQPDLIARLVAQASAHLYAASSYLDQVGRPRSEEELAQLDFVSFGDVERFIG
FLNPAGIPVTRKNFRIGSHSGVVSWELVRQGFGVSVMSDDVAAPTPGIERILPDRDPFAFPIWLATHSEL
HTARRIRLVFDQLAEQFKARETS
>gi|99081590|ref|YP_613744.1| methyltransferase type 12 [Ruegeria sp. TM1040]
MAASSKDAAFWSKISRKYAADPIRNMDGYLQTLDRTKSYLKPEDHVLEIGCGTGSTALLLAPHVAHITGT
DLAPGMIEIAAEKRAKEGLENVTFKVAETLDHNPQDGAYDAILAHNLLHLLHDLDQSLQRIAALTKTGGV
FISKTVCAPKAGGIKYALIRALAIPLMQRIGKAPYVNFISVPDLERRIERAGFEICEVISQPGLMQSHYV
VARKL
>gi|99081591|ref|YP_613745.1| ThiJ/PfpI [Ruegeria sp. TM1040]
MARILILSTAADVLGDTGKPTGVWYEELATPYYAFLDAGHEVTLVTLEGKPVPIDPNSDETGDAAPASVT
RFRADAAATALLAKPGRLEDEDVTAYDALYIPGGHGAMYDLAESATAAAAIGKAWDSGKVVASVCHGPAA
FAKVVDAKGEPIVKGRKVTAFTNSEETAVGLEKAVPFLLETKLRELGAEFENVADWQPLAVADGQLVTGQ
NPASSEAAAKEVLALL
>gi|99081592|ref|YP_613746.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MTVDISLLRVFHAVMEERNVTAAARRLGQSQSTVSAALARLRDALGDELFLRARYGVEPTEKALQIAPDI
AAGLDRLEQAFRAAEPFDPIRSTRRFRLLLGPYAEVVLAPDLAEAFAQHAPKAQLELAPIGPDLDPRKLA
AQSFDLAIGRFAPPPDDLVVSDLFSDGFRCIVAPAALPEGASLDLDLYETLPHVIVAPPGRWRTGVHKLT
AASGLQRNTAVAVSHFLTAAPTVARINGIATVPARIAAMVAAPYGLRNVAVPRDLGTFPTQIAWHPHQRR
DPRHVWLRDLLLSLTATST
>gi|99081593|ref|YP_613747.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040]
MANGTVKWFNATKGFGFIQPEDGTQDVFLHISAVERAGINRIDDGQKVTFDLENGRDGRTSASNLALA
>gi|99081594|ref|YP_613748.1| hypothetical protein TM1040_1753 [Ruegeria sp. TM1040]
MLENLSWGDGQMTNTPAKDDDVDIFAHLSVSAAKSKTSDVMSAADRTTQTVKRLRDEEAAANAEKVARLR
AFRKKHTPKPKT
>gi|99081595|ref|YP_613749.1| hypothetical protein TM1040_1754 [Ruegeria sp. TM1040]
MRNFGCATPHWTGLHGTSYQIQDENMIEIFWGPKMVLTEIETGTQEAFGTIEKAHHWLSRKWPVADSAAR
AALAQVEAAMECMGSVQDARSAFQDAACSAGFHIADQSAQPLAS
>gi|99081596|ref|YP_613750.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MTVRIDATDRKILAELQRDAGQSLDEIAKQVGSSKTPVWNRIRKLREAGVVGNQTVILDAEALGFEACFF
VLIRTSEHEASWQASFLKALQERPEVQEAHRLAGDIDYILKVRVKNARAYDKFYQALISEVRVHNVTALL
SMEEIKSTTHLPLEQIRVD
>gi|99081597|ref|YP_613751.1| uroporphyrinogen-III C-methyltransferase [Ruegeria sp. TM1040]
MCPGVVAFAGSGPGDVDLLTLKVLKALGEADVILFDRLVSKDIMALAHEGALLEDVGKEGFGPSMAQEEI
CARLVHHAKRGLKVLRLKSGDPTIFGRLDEELSACEAADVDTQILPGITAASAAVAAIGQSLTQRGRNTS
VRFLTGHDMKGFADHDWAQLARRGEVAAVYMGKKSARFVQGRMLMHGADLTTPVTVVENASRADQRVLAT
TLEHLPADLAAAHFSGPALTFLGLAPRQAAALTDIQMELA
>gi|99081598|ref|YP_613752.1| hypothetical protein TM1040_1757 [Ruegeria sp. TM1040]
MARAFTPKVVTANHLLEGDVIYLTAENDWTRALSEAELITDEAEAQLRLLEAQSQAQIAVGAYLADAKAG
EQGPEPTHFREEFRRTGPSNYAHGKQEAKLEATANV
>gi|99081599|ref|YP_613753.1| nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like [Ruegeria sp. TM1040]
MYKYNDFDSAFLAERNRQFRAQVERRIAGALTEDEFKPLRLMNGLYLQLHAYMLRVAIPYGTLNPDQMRA
LALLAEKWDKGYGHFTTRQNIQYNWPKLKDVPDMLDALAEVNLHAIQTSGNTIRNVTADHFAGAAADEIE
DPRPIAELIRQWSTDHPEFQFMGRKFKIAVSGAANDRAVLKAHDLAIKIVKNEDGEVGYQVLVGGGLGRT
PMIGKVLNDFVAADDLLPYIESVISVWNQLGRRDNKYKARIKITVHELGLEKIRELTEERFAQVRPTFGG
ADQALFQDIKRHFAAPEFRSEGTEVFDAAYDSDPVFRAWADTNLAEHKAPGHAIATISIKKHGATPGDAT
AAQMYAMADIAEEFAYGELRISHEQNVILPHVHKNDLPAIHARLKAADLATANIGLISDIIACPGMDYCA
LATARSIPVAQEIATRFEDLKLEHDIGHLQIKISGCINACGHHHVGHIGILGLDRAGVENYQITLGGDAT
ETAAIGTRTGPGFAYDEIVPAVERIVETYLEQRESAEEEFLQTYRRVGMEPFKAALYPASEKKVA
>gi|99081600|ref|YP_613754.1| phosphoadenosine phosphosulfate reductase [Ruegeria sp. TM1040]
MTRIDQEIRGHPAAAGSAEALAEQVAALNARFKHHSATSVMEGALRDAGNIALVSSFGAESVVLLHMAAV
IDPSVPVLFVDTELLFTETLVYQQEVSERLGLRNVHVIKADDIAEKDPYGAMRFSDTDACCTLRKTIPLQ
KALAGYDGWITGRKRFQSGTRAALDFFEVEDGTGRMKINPLAHWAPEDVRAYMDENRLPRHPLVAKGYPS
IGCEPCTSPVAEGEDPRAGRWRNQNKEECGIHVVDGKFVRTGA
>gi|99081601|ref|YP_613755.1| hypothetical protein TM1040_1760 [Ruegeria sp. TM1040]
MSVIVTDTGFAHDDWTGGFEGANVLDLASDTDPATLKDQLDGVEMIRVDFPSFADGRGFTIARMLRLMGY
DGRLRAKGHVISDQYAMARRVGFDEVEISDDLATRQPEGEWLFRANWQSHNYQARLRAHSNAAR
>gi|99081602|ref|YP_613756.1| ferredoxin--NADP(+) reductase [Ruegeria sp. TM1040]
MMNEITPVSEPVTEAAAPAKAKPALPDAQTVTQVKHWTDRLFSFRCTRPASLRFRSGEFVMIGLMGDPDP
KTGKQKPLLRAYSIASPSWDEEMEFYSIKVQDGPLTSKLQHIKVGDEIILRPKPVGTLVHDALLPGKRIW
FFATGTGFAPFASLLREPQTYEDYDEVIITHTCREVGELTYGRELIESLKEDELLNEVIGEGFWKKIKYY
PTTTREESAKMGRITDLMRSGEAFADLGVPPLNPESDRAMICGNLAFNLELKDLFENTYGLEEGANSKPA
HFVVEKAFLD
>gi|99081603|ref|YP_613757.1| mucin-associated surface protein [Ruegeria sp. TM1040]
MKIAGVGAAIGLVVVAGAVWYLNQPEDQPVTDMPAEVANEAAPVTTEDTEAAAEVETGEPEAGDLQEQAQ
EAVDAIAETAETAVDQATEAVENAVDAASEAAENLVEGAGETVEAVQEQAEAAVAAAEEEAVAAVEAAQD
GVADAVEGAQESASEAVSTVTEGAVDLATEAQNTADAAAEAVTEAATPEIGADATADVTAAAEAETPAAL
LTPEGFNYDRVIELIEGSELDPLKKTALKSAITQARDNPDLLKAALQSARTALGL
>gi|99081604|ref|YP_613758.1| translation initiation factor 3 [Ruegeria sp. TM1040]
MQMAEEAGLDLVEISPNATPPVCKIMDFGKFKYEQQKRESEARKKQKIIEVKEVKFRPNTDTHDYDVKMR
NVIKFLENGDKVKVTLRFRGREMAHQNLGRELLQRVAEDIKELGKVENMPKMEGRQMIMMIGPLPSK
>gi|99081605|ref|YP_613759.1| molybdopterin dehydrogenase, FAD-binding [Ruegeria sp. TM1040]
MYEFEFARPETVADAVQALSEEDAQALGGGQTLIPTLKQRLAMPSTLVSLGGIAEIRGICQTDDGKLAIG
GATTHAEVAEGAAAYPALAALAGQIGDPAVRNRGTIGGSLANNDPAACYPAAALASGATIVTNAREIAAD
DYFQGMFTTALEEGEIITEVRFPVAEAANYQKFLQPASRFAMVGVFVAKFADGVRVAVTGASEEGVFRWR
EAEAALSGAFSADAISGLSVEAEGMIGDIHGTKDYRAHLVTVMTKRAVAAAG
>gi|99081606|ref|YP_613760.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein [Ruegeria sp. TM1040]
MPKDIEAKESGIGAATKRREDVRFLTGTGNYADDINVNGQAYVHFLRSDVAHGRITSLETAAAAAMPGVL
RVFTGADFEGVGGLPCGWQVTDRFGEVMQEPAHPVLAQGKVRHVGDPIAAVVAESAELARDAAEAIELEI
EELPAVIDMKAALAEEAPKVHDDLTSNLCYDWGFVEENKDAVAKAFDEAAHVTTLELVNNRLVANPMEPR
VAVGDFNRATGESTLYTTSQNPHVIRLLMGAFVLGIPEHKLRVVAPDVGGGFGSKIFHYAEEAFCTFAAK
ALNRAVKWTSSRSEAFMSDAHGRDHVTKIELALDADNNFTALRTETYANMGAYLSTFAPSVPTWLHGTLM
AGNYKTPLIYVNVKAVFTNTVPVDAYRGAGRPEATFQLERVIDKAARELDVDPVALRRQNFVTEFPYATP
VAVEYDTGDYVATMDKLEEIADIAGFAARRAESEKSGKLRGLGVNCYIEACGIAPSNLVGQLGARAGLYE
SATVRVNATGGIVVMTGSHSHGQGHETSFPQVIAEMIGIPEDMVEIEHGDTNNAPMGMGTYGSRSLAVGG
SAMVRATEKIISKAKKIAAHLMEASDADIELKDGRFSVAGTDKSVAWGDVTLAAYVPHNYPLEEIEPGLE
ETAFYDPANFTYPAGAYACEVEVDPETGKVTIERFAAADDFGNIVNPMIVDGQVHGGIGQGIGQALLEGC
VYDEDGQLLSASFMDYAMPRADDVPFYQVDHSCQTPCTHNPLGVKGCGEAGAIGSPPAVVNAVVDALRSA
GKDVTHIDMPLTPARVWAAMQG
>gi|99081607|ref|YP_613761.1| (2Fe-2S)-binding [Ruegeria sp. TM1040]
MTKVSMTVNGNPVSGNVEGRTLLVSFLRDQQGLTGTHVGCDTSQCGACVVHVDGKAVKSCTMLALEAEGA
EVATIEGQAAPDGTLNAIQAAFQEHHGLQCGFCTPGMVMSAAALLKENPKPSEAEIRHYLEGNLCRCTGY
HNIVKAIMAASGQDVSAIAAE
>gi|99081608|ref|YP_613762.1| molybdopterin binding domain-containing protein [Ruegeria sp. TM1040]
MKFGPVPLRAALGTIAAHSIRAAARPYGSGRDYKIAKGTELTADHIEDLNELGHQEIIVAQLEPGDVHED
AAALRLAQALVPDPEGQELRISGAGAGRVNLYARGAGVVRLDAAQVAAVNGIDPMITVATVPDYHRVDPD
SMVATIKIISYAVPEAHLAQAVVAAKAAIRVLAPAFGTATLIETRITEEIPSDKGRAAMAGRLDRMGITL
SPRVVKPHRTAEIASALRDAPGEVLLVLTGSATSDPQDVAPEALRMAGGEVTRFGMPVDPGNLLFLGYLG
EKPVIGLPGCARSPALNGADWVLERVVCGLDVTSADIAAMGVGGLLKEIPTRPRPRRSAGGSEPRRIKSS
RDLLTRD
>gi|99081609|ref|YP_613763.1| hypothetical protein TM1040_1768 [Ruegeria sp. TM1040]
MTIAGMTSGTLSNAEEGSLSRFDAAPELALAWHRAGQGAVLCTVVQTWGSAPRRTGSQLVVGGDGRIEGS
VSGGCVEGAVVVEAQEALAQGCHKLLEFGVSDGDAFAVGLACGGTIKVLLEPVGSVLKEETLDALVTARR
EREAVAYEVSLKSGKGRLVEAGAYPERLRMDRSGVEEDGNTFVAVHNPPLRLIVVGAVHIAQALVPMAQI
AGYDPVVIEPRAAFGSEERFPGVRILEDWPDDAVAQIGFDSRCALVLLTHDPKLDDPALMAALRSECFYI
GALGSNRTHGQRRERMIEAGFGTADIARIHGPVGLDIGAASPSEIAVSILAEITAVLRGKAE
>gi|99081610|ref|YP_613764.1| VWA containing CoxE-like [Ruegeria sp. TM1040]
MVEYPSLAISDDPKLAANITHFARALRKAGLNVGTGRVLDAIRAVEAAGFTSRRDFYWTLHACFVSRPEE
RVVFGQVFRLFWRDPRFLEHMMAAMLPAIRGVQQERAAKPAETRAAEALLDGQLPEHPEESPEATDEAEE
IEIDAAMTLSAEERLKTLDFEQMTTEEIQQAKRMLATLRLPIAPLKTRRHQPAPQGARPDWRRTMRGAGR
TGGEIARIARSKRAERFPNLVVLCDISGSMSQYSRMVLHFLHAVANRPADGRQGRWAQVHGFTFGTRLTN
ISRHLKQRDVDAALAAAGAEAQDWQGGTRIGGCLHAFNRDWSRRVMGQGAVVLLVSDGLDRDVPETLALE
MQRLRLSAGRLVWLNPLLRWDGFLPRARGIQAMLPHVDSFRAGHNIASLEDLAQALSRPDDTGEKLRLMA
MMQEERA
>gi|99081611|ref|YP_613765.1| ATPase [Ruegeria sp. TM1040]
MTTAGFQSIDAVQSELSEAGYVCGRALATVVFLSTRLGRPLFLEGEAGVGKTEIAKALAAVTGRPLIRLQ
CYEGLDAASAVYEWNFAAQMMAIRMAESAGQSDREALQAELFSQDYLIARPLLQAMQPDARGTPILLIDE
LDRTDAPFEAFLLEALSDFQVTIPELGTIRAPEPPMVILTSNRTREVHDALKRRCLYHWVDYPDFDRELE
ILTAQVPTASEALSRQVVAFVQSLRTEDLFKKPGVAETIDWANCLLALDVVNLSPETIADTLGALLKYQD
DIARLQGSEAKRLLDEARSLLQEH
>gi|99081612|ref|YP_613766.1| hypothetical protein TM1040_1771 [Ruegeria sp. TM1040]
MTDFLFYSNDCTDGSDVLLDALAQRGGLSHLPNPAKGRAYQMEALKDCAHQPVVKQADWIWITDVDEFLN
IHVGDHSIPALIEACHSPAAISVTFQFFANAGIEKFEDRPVIEQFTRSHNPDIWCGETAIEVKSLTRRDF
PLGYYGAHRPFVSKSAKTHPRWCDGSGRQVPQKFLTAANPRRIRKFPAKGARQLATLNHYALRSLDSYLV
KNDRGDVNRENRAFDDTYWRERNDPSWEDRSILRLLPNLKAALAEMKSDPEIARLHDACVAAHLAQRDAL
LAQPAYQAMRAQLQKASPLPPQEEAMLMRLGLM
>gi|99081613|ref|YP_613767.1| hypothetical protein TM1040_1772 [Ruegeria sp. TM1040]
MTVEIINLGLPKSGTTTLKDALTRAGYSVADHRIKSEEDPDDPDDRVFVGDLMYQGLYKYGDPLALLNTH
DALTEVSFIYGGNSVWPQCDHAMLLALRKLHPRLCFVATRRDTEQMAHSIMRWNNLGKLRLPLSTVPGLP
VGYGHEIDEQMIWIDGHYEALAHWFRNDPLYLELDVAAPDAQYKLARFLGRPLPWWGQSNINPEGPSARG
RGRRQDEAG
>gi|99081614|ref|YP_613768.1| hypothetical protein TM1040_1773 [Ruegeria sp. TM1040]
MRIYLHIGLHRAGSERIQAVLADKRDQLRARGILVPRAAGSKNHTRLFMAVSDPEHVDPLRYNRGFISPE
KQADLRANLQESLSRDITQYQPHTLILSAHQLGTHLSRKSELERLKALLAPLSDDIRIVAHVEAQARMLA
DVFAEQVFEGRAASLSREVELTREDSWWSAALDTLPPVDPQAGQFEETQGAPFWLDFKALQGFWEEVFGA
GTVSFRSYRAEVFDSADVTQEVCETFGIAEQIGRVDPAKRSRPIPAAWLTRGRQFNALLLRLLAQGNHIL
PRKLWRQMIQDLKVDGPPLDPARLGAVTRFFTAQNTHLCAEHAALSQDVFEIETSTEDWSEAPPLQGFRA
SQYLLAFLYRIEKATNEERAAREGDLKAHQSARAAQQSAEGAAPTAKARRLMPPLALKNFAMLQGSTFKP
HDRLGRVDETAERPPYTEVPPRILSKGQSGNVIVGCMKDEAPYILEWVAYHRMIGVDHFLIYTNGCSDGT
AELLDRLQALGILEHRNNDNWKGNSPQQYALNQALKEPVIKQADWVIHIDVDEYINVRCGNGTLADFFDH
VPDATNVAMTWRLFGHNGITTLNDRPVIAQFDRCAPKFCPKPHTVWGFKTMFKTIGAYQKISCHRPNKLE
EEKRAQVKWVNGSGEDMTHEVIDNGWRSSKKSIGYDLLQLNHYALRSAESFLVKRQRGRALHVDRSIGLN
YWIRMDWNDHRDITIQRNLPRMQAEMDRLLADETLRALHEAGLAWHRAKAAELHQQEEFEALYQQALEID
IPATERVAWALSLDLES
>gi|99081615|ref|YP_613769.1| glycosyl transferase, group 2 family protein [Ruegeria sp. TM1040]
MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVENTGPFDKGGIQ
FTAMKRADKHRLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAITLTWRLFGNADQVRYEGERV
TDRFTRAAPAVMHWPWRASMFKTLYRNSGVYRKIGIHRPRNVKDEAARDQYRWFDCVGRELMGDFKTKRV
FSNYGQDNYQLAQLNHYPLGAMESYILKANRGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAIL
DLFLADEALRKLHERAVQWRKDRFMELMREEPYRALFGRLMMTPPSRPISQVTGRTLAGFATLGHQNQRR
IRVKKDTVPGETPSGDSPNTSPLPDKD
>gi|99081616|ref|YP_613770.1| hypothetical protein TM1040_1775 [Ruegeria sp. TM1040]
MQDDTDILEQDLSGLKPAEWQARLAEMAEENGMYQPLGERHFATFIDQGNTLLVTFESRQGIESFSETAQ
PLGFDLVKNLGWSHLCLISDGDTWFREPRIYGFFDQLIDDGFFEEFDNVVFYGAGPCGYAAAAYSVAAPG
ATVVAIQPQATLDPRMTEWDDRFVEMRRTSFTDRYGYAPDMLDAAERGFVLYDPYQSLDAMHAALFARPN
VTRLRLPCMGEAIQTRLIEMDILYRIMSLAGSGRLTAEAFYRLARARRDNNVYLRNVLNRLDYLERPYLN
ILLCRNVNDRRRMPRFRRRLRDLERRAAEGEFRMPPGPALPPDPQHGDDGL
>gi|99081617|ref|YP_613771.1| dihydroorotase [Ruegeria sp. TM1040]
MTQSLTITRPDDWHLHLRDGDMLRAVLPETARHFGRAIIMPNLVPPVVTGAEASAYRDRILAALPEGMTF
EPLMTLYLTEDTDPADVAAAHASGLVKAVKLYPAGATTNSSSGVRDFDKVRPVLEKMAEIGLPLCTHGEV
TDHDIDIFDREAVFIDRVLDPIRQSTPGLRVVMEHITTKDAADYVRSQDKDLGATITTHHLIINRNHILV
GGIKPHYYCLPVAKREEHRLALRQAATSGDARFFLGTDSAPHTDANKLQTCGCAGCFTATNTMALLAHVF
EEEGALDKLEGFASKNGPAFYRLPENDGQITLVKQDAPVAFPEQIDTPDGPVTVFDPSFAVHWTVT
>gi|99081618|ref|YP_613772.1| orotate phosphoribosyltransferase [Ruegeria sp. TM1040]
MIPSSYPSAEEIARLSARMLLEIGAVNFNTDEPYTLASGLPSPSYIDCRKLISFPRIRSTLMDFMAVTVM
RNAGFEAFDNIAGGETAGIPFAALVAERLALPMTYVRKKPKGYGRNARIEGAMSEGERVLLVEDLTTDGG
SKLSFVDAIRETGATCGHTAVIFYYDIFPETTKTLGDHGVQLHYLCTWWDVLAEARAQAAFSTETLDEVE
KFLRDPRAWQEANKKT
>gi|99081619|ref|YP_613773.1| replicative DNA helicase [Ruegeria sp. TM1040]
MNEITSFNGDPQPPASPDARGAADEAQATELPHSVEAEQQLLGAILTNNDVYDKVASIINSSHFYDPVHA
RIYEVAAARISKNALASPVTLKAFMEDDQGLKELGGPAYLAKLASASISAFAVRDYAQMIYDLAIRRELI
ALGQTIAEKARRVDVASEPKEQIVEAEQSLYQLAEQGQTEQGFKSFLRAVTEAVNVTNEAYQRGGGMAGI
STGLDDLDKQLGGLHPSDLLILAGRPSMGKTSLATNIAFNVAKAYRRGLKQDGSEGAIDGGVVGFFSLEM
SAEQLAGRILAEASEISSHKIRQGDMTEEEFRRFVQAAKDLESCPLFIDDTPAIPISQLAARARRLKRTH
GLDLLVIDYLQLCRGMSDNRVNEIAEISMGMKAIAKELNIPVIALSQLSRQVESREDKRPQLSDLRESGS
IEQDADVVMFVFREEYYKEREKPGDHELDKMEEWKQAMERLHAKAEVIVGKQRHGPIGTVELSFEAQFTR
FGNLAKAWQQQPDGY
>gi|99081620|ref|YP_613774.1| alanine racemase [Ruegeria sp. TM1040]
MSTARLKINLDALAINWRNLDAKTNCETAAVVKANGYGLESGRVGKALAQAGARNFFVAIAEEGIALRRA
LGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESLPGHPFGVQLDSGMNRLGMEAAEWMAVR
DIALDQNPVLLMSHLACSDEPGHGMNAYQLKNFIEMTEGLNIPRSLAATGGLLLGRDYHFDLCRPGIGLY
GGAPYADALPVVELEVPVIQVRDLAPGESVGYGNTWIAQRDSKIATIAGGYADGLHRAFQRQGIMAYAGG
TPCPVVGRISMDLITVDVTDLAEVPPYLSLMNETQTVDVLANAADTIGYEVLTSLGNRYARTYSA
>gi|99081621|ref|YP_613775.1| hypothetical protein TM1040_1780 [Ruegeria sp. TM1040]
MTPTSALGMIGRASLGRLAALGRITRFAASTFSHMLRPPFYPRELANALLQVGWLSLPVVALTAIFTGGA
LALQIYAGGARFNAEAVVPQIVAIGMVRELGPVLVGLMIAARVTSSIAAEIATMRVTEQIDALVTLSTNP
MKYLVAPRVLAALLTVPVLVGVGDIIGIMGGYVVATETLDFNAAAYLKNTVDFLELRDIVSSLVKGAAFG
TIAALMGCYYGMQSGRGAQGVGRATKGSVEAAAVLILAANFVLTGVFFSL
>gi|99081622|ref|YP_613776.1| ABC transporter related [Ruegeria sp. TM1040]
MTHPMIEMREVAKAFGSNAVLRGVDLEVAKGSSLVIIGGSGTGKSVALKCVLGLIEPDSGEIRVDGKPVG
QGDRDAFLSRFGMLFQGGALFDSLPVWQNVAFRLLRGSLARPRDEAREIAIEKLRRVGLKPDVADRLPAE
LSGGMQKRVGLARAIAAEPEIIFFDEPTTGLDPIMSGVINDLIREIVVEMGATAMTITHDMTSVRAIADN
VAMLHGGKIRWTGPVAEMDNSGDPYVEQFISGSAEGPIEAVR
>gi|99081623|ref|YP_613777.1| hypothetical protein TM1040_1782 [Ruegeria sp. TM1040]
MLAAILAPIINGILGLFAALVSLMAELLPPVLAPIVEAILWVYVALIAAFSHLIWGLVRLLGLASHARGI
SFAFFALAIAATLYLLAGMALFFEGDTQNVLRSGYSTHSVLVAFVGMLVAAAIGSCLRNDPSATEPNEAI
AQTSDAPSVAPSHVSSRRRAYVTGAVLAVGCGLLGLWIYNTVLAAKEKRPCTKTETAIIVAERVVASKSG
AQNSFDTEDLKCRLP
>gi|99081624|ref|YP_613778.1| paraquat-inducible protein A [Ruegeria sp. TM1040]
MTAASARGKTLLFLRLANLALLILYPIAWFAPLLRAGLLPIFGLSEISVLTGLQSLWNSDIVLALVVTVF
ALFAPYLKTIGLALVQFRLLDARSLPVLNILGKLAMADVFLIALYITLAKGISYATIEVAWGMYLFTACI
LASIILSIATDRHIRRESGAGQ
>gi|99081625|ref|YP_613779.1| DNA repair protein RadA [Ruegeria sp. TM1040]
MAKTTFSCSACGASYSKWSGRCEGCGEWNTISEDKGLSSGGPAKKSLGAMRGKRLALSDLATQETPPPRT
LCGVAELDRVLGGGLVDASAILVGGDPGIGKSTLLLQAAAQFAHAGLKTVYVSGEEASAQVRMRAQRLGL
AQAPVKLAAETNLRDILTTLEAEKPQLAIIDSIQTMWADNVDSAPGSVSQVRAAAHELTTFAKTNGVSII
MVGHVTKEGQIAGPRVVEHMVDTVLYFEGERGHQFRILRAVKNRFGPADEIGVFEMTGGGLAQVVNPSAL
FLSERGQPSPGSVVFAGIEGTRPVLVEMQALVAPSPHSQPRRAVVGWDSSRLAMILAVLEARCGIPFAGL
DVYLNVAGGMKISEPAADLAVAAALLSAREDTALPADTAIFGEISLSGALRPAPQTENRLKEAQKLGFTA
AIAPSGGKTVSVPGLTLRPAADLTGFVGEYFGAG
>gi|99081626|ref|YP_613780.1| colicin V production protein [Ruegeria sp. TM1040]
MANISEQAKRPLKLYFAGKQARDMEGFTIIDGAVALVIVVSALLAYARGFVREVMAIIGWVAAGVLAYMF
APQAEPLMAEIPVVGDFIADSCELSMIAAFFAVFAIALIVVSFFTPLLAGLVQRSALGGLDNGAGFFFGV
LRGILLVVIGFFVYNVIMTGQSFTIVDESRSAAVFNQVIGKVEEQNPEQALGWVTQKYEELIASCGI
>gi|99081627|ref|YP_613781.1| hypothetical protein TM1040_1786 [Ruegeria sp. TM1040]
MLLDHTTAFTDYQPVDLLLDLRSGDAEAQANARLRPQNGGVLPGTLIETGSGFKQARALRPGDMVQTFDG
GLREVVNVRHSVPRLTAMVHVPAGALGNDAALELPSDAIVAIEGDLALDLFDLPVVTAKLVALIGYNGIT
TALPERLARIHIECAEEELVWCEGGMVLNAAEAETEGFYELLDLAETRQIVEAGRIEATETFEIDEDAED
ADFFGVEAAPAPAFDPIDLLFGRYAA
>gi|99081628|ref|YP_613782.1| amidophosphoribosyltransferase [Ruegeria sp. TM1040]
MCGILGIASRNEQVFAELYDGLLMLQHRGQDASGIVTYGDGFFRERKANGLVKDVFGAKDAETLQGRVGM
GHVRYPTAGSLSAAEAQPFFVNAPYGIYLVHNGNITNTEEQRAKVTGKYSRHLRTTSDSEILLNVLADKV
ADAIKVNGNADPIRNIFAGVKMTMERVQGAYSVICLIAGVGMLAFRDPHGIRPLSVAQREAEGEGNDYAF
ASEDVAFGINGFEKLRDLKPGEAILVDLDGNKHEFQAVEGKLTPCIFEYVYLARPDSLLDGISVYKTQIR
MGQTLAKQIEASGLDIDAIIPVPDSARPVALEVSNITGIRYREALVKNRYVGRTFIMPGQEERQKSVRRK
LNAIPREMQDRNILLIDDSIVRGNTIKKIVQMCREAGAKKVYIASASPPVKYPNVYGIDMPTKHELVANG
RSIEEIREELGADELFYQNLEDLIWAAKGGNPDIEAFDCSCFDGEYVTGSVSEDYLNTLETSTRVTKKIK
DMPDAGASWNGATLAT
>gi|99081629|ref|YP_613783.1| hypothetical protein TM1040_1788 [Ruegeria sp. TM1040]
MLSSSRQCRCCGATFAQLLSLSCDRPDIVPGDLELQDNTAVFVTEGDVLTEDFCRFGTLRFLRAVLAIPL
ADSRGEEFILGTWAGVSEEVFNEYLDLFELRETESMGSRPAWLSNQIPPDSNGPLACMLHMRPDGQYPEL
QVSEVNHDLARMQELGLNLEELLTFLHAYGHDLASLVYDS
>gi|99081630|ref|YP_613784.1| hypothetical protein TM1040_1789 [Ruegeria sp. TM1040]
MSNADSNVAALATQKDALPDRNLSVIGLFGSEGNMQALVRHGSGRVQTVQAGERISLGRIMAIDAAGLLI
ERRGEIGRLPMLVD
>gi|99081631|ref|YP_613785.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MTDKIALITGASRGLGAALAEALAPTHHIIAVARTTGALEELDDRIQAAGGSATLAPMDITVPEAMATLC
RGIFDRWGKLDLWLHTAIHAAPLSPAHHVAPKDWQKSVSVNATAPSVLVPYVAPLLGQDGTAVFFDDPRA
GEKFFGAYGATKAAQIALVRSWQQETIRTGPHVKLLTPPAMPTALRARFFPGEDRTPLTPPAEAAKALLT
DILAP
>gi|99081632|ref|YP_613786.1| stationary phase survival protein SurE [Ruegeria sp. TM1040]
MRILVTNDDGISAPGLAVLEQIATELAGPEGEVWIVAPAFEQSGVGHCISYTHPSILSELGPRRFAAEGS
PADCVLAALHVVMKDTPPDLILSGVNRGNNSAENALYSGTLGGAMEGALQGVPAMALSQYYGSGNRDLEN
PFEAARAHGAEVVRKLLSATPQNDSPYRLFYNINFPPVAAGDVKGIKVTTQGCRSGKRFSAEEQFSPNGK
RFIWVKGGDQQVSTAPETDAAANLDGFISVTPMRADLTAHDAVEALKAIE
>gi|99081633|ref|YP_613787.1| protein-L-isoaspartate O-methyltransferase [Ruegeria sp. TM1040]
MSGPDAQTKMQFLFALRSRGVTEAAVLEAMEAVDRGLFLRGIFSERAYEDVPLPIACGQTISQPSVVGLM
TQALQVNPRDTVLEVGTGSGYQAAILAKLARRVYTVDRHGRLVREARQVFQQMSLSNITSLVGDGSHGMP
DQAPFDRIIVTAAAEDPPGPLLAQLKVGGIMVVPVGQSDAVQTLIRVRKTENGLEYDELRPVRFVPLLEG
LGKDT
>gi|99081634|ref|YP_613788.1| peptidase M23B [Ruegeria sp. TM1040]
MTRTPKVFRTIRPIPLPFPRSSSASSGASRLRPSIALLPLVLLAAACTEPLDYDLRGQLGAFNTTRAAQT
ATENRPAPDSRGLITYPSYQVAVARNGDTVADLAGRVGLPAVEVARFNGVETTDPLRKGEVLVLPRRAPE
ASARSGTATPGGVDIASLAGSAIDSAPSTSPNPGSVTTTTLQNTPSKPAPTRVQAGPEPVRHKVTRGETA
YTIARLYQIPVKALAEWNGLGSDFAIREGQYLLIPLKDPNARPPKAETQEAVTAPGQGSATPTPPSATQP
LPDEDVKPAAEARTEPTPTVKIQEPTRASEAAMAYPVTGKIIRAYSKGKNDGIDIAAAPGSPVKAAEAGT
VAAITADSNKVPIIVIRHDRNLLSVYANVDGIRVQKGDRVNRGQNIAKLRGSAEEAYVHFEVRDGFESVD
PLPYLQ
>gi|99081635|ref|YP_613789.1| hypothetical protein TM1040_1794 [Ruegeria sp. TM1040]
MSGQQDDVEDGMDQDTLTRIAEALERMAPVPQSTPDFSAASGFVWHVEPDRLEPVPEINRVELDLLVGID
RSRDTLLENTRRFAAGHAANNALLWGARGMGKSSLVKAIHGALVTDHPELKLVELQREDLPSVARLLNHL
RGAPCRFILFCDDLSFSHDDQHYKSLKAVLDGGIEGRPENVVFYATSNRRHLMPRDMIENERSSAINPSE
AVEEKVSLSDRFGLWLGFHPCNQDAYLAMIEGYCAAYGVTVDPERLRAEAIEWQATRGARSGRVAWQFFT
DLAGREGVALR
>gi|99081636|ref|YP_613790.1| Sec-independent protein translocase TatC [Ruegeria sp. TM1040]
MSQTDDLDDSTAPLIEHLAELRSRLIRAVMAFAVGIVLAFMVAEPILQFLVAPIEQTLRELGDPSPTLQY
TSPQEYLFTLFRISMVFGFALSFPVIGFQLWRFVAPGLYKSEKGAFLPFLIASPFMFLLGASFAQFVVTP
LAMQFFLGFADVSSIFAGLLSQATGGDVPADVAVVPETSEGVKITFFGKVNESLDITLKFIMAFGLCFQL
PVLLTLMGKAGLVSAEGLGGMRKYAVVAILVLAALVTPPDVITQIILFTVVYGLYEVSIFLVGRVEKKRE
AQLRAEGYYDDELDGE
>gi|99081637|ref|YP_613791.1| twin-arginine translocation protein TatB [Ruegeria sp. TM1040]
MFDLGWTELLVIGVVALIVVGPKDLPKLFRNVGRFVGKARGMAREFSRAMEDAADEAGVSDIQKTFKTAT
NPMGSAMDSVKQATRDLTDSIDPTKFDPESETGKLAADRAENAKKIQAATARAAADRMAREAAEAAAKAE
EAEAALSATPASTASSDSETKA
>gi|99081638|ref|YP_613792.1| sec-independent translocation protein mttA/Hcf106 [Ruegeria sp. TM1040]
MLNNIGLPGILLIAVVVLVLFGRGKISSLMGEVGKGITSFKKGINEGTKELEDDAAAEAKDVTPEAEKDK
A
>gi|99081639|ref|YP_613793.1| hypothetical protein TM1040_1798 [Ruegeria sp. TM1040]
MTKTVVEVVTFKLNPGVSDADYVAASQKTESFIGAMRGFIDRRLSKGEDGTWMDYVVWADMTAAQDASAQ
FEQAECAADLMQMIDPKTLMMRHEHQMWTMSPASAMG
>gi|99081640|ref|YP_613794.1| helix-turn-helix, type 11 [Ruegeria sp. TM1040]
MRRTDRLFEIIQILRDGKLHRAQDIAARLEVSTRTIYRDMDTLVASGVPVEGERGVGYMVREAITLPPLT
LTPSELEALNLGMAIVAEAADPELKSAAESLAAKVDAVLPVETVAEAEAWKFAVYPFGDAARGFAWMPTL
RAAIKARQKLALRYRRIDQTLTERVIRPLHMEYWGRVWTLTAWCETRGDFRVFRVDLIETAEALPELFVD
EPGKRLQDYQACEDAREGS
>gi|99081641|ref|YP_613795.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MLEPCQPEAAMQQSFEIRPLTRDEIDVAVTWAAHEGWNPGPSDATCFAAQDERGFWGGFLEGEMIACISV
VTYGAAFAFLGFYIVAPQHRGQGYGYALWQRALEHAGQRSVGLDGVVDQQENYRRSGFDLAWSNIRFGGV
LDAVPRASDAFSLTWLDGLTQDVAAFDARVFPAPRPAFWQHWLRAPGHVSIAAYDETGISGFGTLRRCET
GAKIAPLVATSREAAQAVLAGLLRDWPKDEEVFLDVPEPNAAAVALARDLGLVPVFETARMYRGRRPEVA
RDLIYGVTSFELG
>gi|99081642|ref|YP_613796.1| ABC transporter related [Ruegeria sp. TM1040]
MPEQRTKSALPSVQAEGHEVTPRLEIRNIRRFFEGRAVVDDVSLTVLPGQVTCLLGPSGCGKSTTLRMIA
GVEMQDEGEIYVDGKLICDTIFRVPPERREIGLMFQDFALFPHLSVGDNVAFGLKGSKDQKRARARELLD
RVSLAQYIDDYPHQLSGGEQQRVALARALAPSPKIMLMDEPFSGLDNRLRDGIRDETLSLLKEEDTAVLL
VTHEPEEAMRMADEIALMRDGRIVQQGAPYNVYTRPVDKAAVAFFSDVNTLPAQVNGALAETPFGQFLAP
GVPDGTDVEIVFRPQHLRIDFDRNGRGPEATARDGVPARGIVQRARFLGNESLVEFRMDFDGSILKATVP
NVFLPAEGRAMWLTVPRDRCFVFTR
>gi|99081643|ref|YP_613797.1| hypothetical protein TM1040_1802 [Ruegeria sp. TM1040]
MAESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARLLDLELKARINWIAEMLSKHVPGPLDQ
VAPVIFAALPPPLDPSLRDDDFGDFIFAPLGEWVADLTKTEADLPLALDLLEAVTQRFSMEFAIRPLLKT
WPDPVLARMSRWAGHAHYHVRRLASEGTRPRLPWGLAVNLPLDAPLPILDRLHGDDTRFVTRSVANHLND
IAKKDPQIVVDQLTAWQARGEQAQKELDWMTSHALRGLIKAGDPRALRLLGYDPELDLSAELELPGRVRI
GEKLMLGARLQGGRGARVLVDYALTFQRAGGKTSTKVFKWKTGTLGADGLSLQKTHPLKAQASTFTLLPG
AHRVTLMVNGQPRASGEVEFLA
>gi|99081644|ref|YP_613798.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MDLGIRGKRALVCASSKGLGLGCAEALAEAGVDLLMNARGSEALEASAQDLRDRFGVRVETLACDVTDEG
ARAELIDRAKGVDILVTNAGGPPPGVWSDWDRADFIKALDANMLTPIALMKALLPAMMEAGWGRVVNITS
QSVKAPIAALGLSNSARAGLTGYVAGTARQVAGQGVVINNLLPGIHATDRAVSLDTGVAQAQGISMDEAR
AQRAATIPAGRYGTRQEFGATCAFLCSQHAGFIIGQNILLDGGATNMTL
>gi|99081645|ref|YP_613799.1| hypothetical protein TM1040_1804 [Ruegeria sp. TM1040]
MTDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFGVSTEGTITLH
SESEMGQDGARLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQAPLAQGTGYRLVRASREPVW
TRLAQLSCVAFSRGTHITMGTGEQRPIEMLRAGDRVLTRNSGARRITWVGHTTVRAVGEMAPILIRQGAL
NNARDLLVSPDHRLMIYQRSDALGAGRNELMIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIA
AESMLVDPVTRPALPEEVQQRLTQPRRHGTRGDHGLEIRRPMLSHPDTVDLLKRASLR
>gi|99081646|ref|YP_613800.1| hypothetical protein TM1040_1805 [Ruegeria sp. TM1040]
MFRFLKSQARRSARRARYAVLTALSAAVGAGFLSTALYAALLQAGQPHAIAALILGSLWFGLSGVFLLLK
GGVGADEGAHSGSGVSGVQAAAPHVAHPHGHVSTAPSVAEAFVNGMNEGAGFARMQQGRS
>gi|99081647|ref|YP_613801.1| protein of unknown function DUF883, ElaB [Ruegeria sp. TM1040]
MPKDQAAPSSDEIIAQMDVLRSDIAELSKSVSHLAKDRVGKARDAARETARDQAQTVADGAAQMSRQAED
AVRAQPLAATAIAAGLGFALGYLSNRR
>gi|99081648|ref|YP_613802.1| peptide chain release factor 3 [Ruegeria sp. TM1040]
MRPVKHIAPVQHGFSLPLSRFVAKASLMLDTAHNRPDLPPEIARRRTFAIISHPDAGKTTLTEKFLLYGG
AIQMAGQVRAKGEARRTRSDFMQMEKDRGISVSASAMSFDYGDFRYNLVDTPGHSDFSEDTYRTLTAVDA
AVMVIDGAKGVESQTQKLFEVCRLRDLPILTFCNKMDRESRDTFDIIDEIQENLAIDVTPASWPIGVGRD
FIGCYDLLRDRLELMDRADRNKVAESISINGLDDPKLAEHVPEHLLEKLLEEVEMARELLPTLDPQAVLE
GHMTPIWFGSAINSFGVRELMDGIGQYGPVPQIQSAEPRQIAPEEKKVAGFVFKVQANMDPKHRDRVAFV
RLASGHFKRGMKLTHVRSKKPMAISNPVLFLASDRELAEEAWGGDIIGIPNHGQLRIGDTLTEGEALRVT
GIPSFAPELLQGVRAGDPMKAKHLEKALMQFAEEGAAKVFKPSIGSGFIVGVVGALQFEVLASRIEMEYG
LPVRFEASQFTSARWVHGDKTAVDKFVNANKQHIAHDNDGDIVYLTRLQWDIDRVERDYPDLKLSSTKEM
MV
>gi|99081649|ref|YP_613803.1| hypothetical protein TM1040_1808 [Ruegeria sp. TM1040]
MTVKWGLVATLKAEAEAVLNFAAWHLEQGAHRLFLYLDAACPDALPHLQDHPRIRVIETTEAHWLKRRGR
VPEKHQVRQSLNATRAYRRQARDLDWLIHIDVDEFLWSPDPLAPQLEALDPDVLCARVRPLEHLAGSADR
FKSRIPSGSDASQISTRIYPRFGGYLKGGFVSHVQGKLFVRTGLEEVDLRIHNVFVEGVENPCATELTNI
DLCHHHASDWAQWIAQYRYRLNKGSYRADLRPAQPRSAGGTTLHELLSLLEAEEGESGLRAFFDETCADS
PELRQTLASEGLLRQRALPLVAIRQKHFPHFS
>gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
MTKFTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMITRLARGRAR
ARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDRGVDVLIATPGRLLDHFER
GKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSATMAPEIERITNTFLSGPERVEIAR
QATTSENIEQAVVMFKASRKDREGSEKRRVLRELINQEGEAVQNAIIFCNRKTDVDIVAKSLKKYGYDAA
PIHGDLDQSQRTKTLDGFRDGTLKILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDG
KAITLCSPRDEKALDAVEGLVQKEITRLENPVKPTPRKTATKDEDAGDKPKPARRSRSKAASAKTDATPT
PEAANDAAPQVEAPQQQPQEPKETRAEQPSAGAKSGKSRGRGRRDDRRDDKVVGMGDHMPSFIALSFDER
RAS
>gi|99081651|ref|YP_613805.1| hypothetical protein TM1040_1810 [Ruegeria sp. TM1040]
MAGRFRQAACLRRLAVPSRAPRLAGGAASGCARARQQQSRGFDRAKERGANAGEDEAHHFGTQFARAQFD
CSQLVNIQRGGFIQVHCFTLGCFIDGADLDHRCGRDIA
>gi|99081652|ref|YP_613806.1| TRAP dicarboxylate transporter- DctM subunit [Ruegeria sp. TM1040]
MEVVLLFTLVIGLLLIGVPIAVSLGLSSTIFLLIYSDSSLGSVAGTLFQAFEGHFTLLAIPFFILASSFM
TTGGVARRIIRFSIACVGHLPGGLAIAGVFACMLFAALSGSSPATVVAIGTIVIAGMRQVGYSKEFAAGV
ICNAGTLGILIPPSIVMVVYAAAVEVSVGRMFLAGVIPGLMAGIMLMVTIYVMAKVKNLPKGEWNGWGEV
FASAREAGWGLFLIVIILGGIYGGIFTPTEAAAVAAVYAFFIACFVYKDMGPLSNGEGQPKDSLLKKPYA
LITAFFHSDTKHTLFEAGKLTVTLLFVIANALILKHVLTDEQVPQHIANAMLSAGFGPVMFLIVVNVILL
IGGQFMEPSGLLVIVAPLVFPIAIELGIDPIHLGIIMVVNMEIGMITPPVGLNLFVTSGVAGMPMMAVVK
AALPFLAVLFVFLIMVTYIPAISTFLPNMIMGPEIITN
>gi|99081653|ref|YP_613807.1| tripartite ATP-independent periplasmic transporter DctQ [Ruegeria sp. TM1040]
MSGARTGPSGFIHTLEESLIALILGAMTLLTFANVIARYVFNSNILWALEVTVFLFAWLVLLGAAYAVKV
HAHLGVDAIINMLPQGARRILGLIAAAACIIFSLLMLKGAYDYWAVFADLPPTSGRWFPTGFDVKARSQS
FYEVQDVPMIGALRFLEDLINYGDSYEKMPKVVPYLVLPLSMLLLVIRFVQAAVQILRGQTDRLVASHEV
EDELEAVRAQRGEHD
>gi|99081654|ref|YP_613808.1| TRAP dicarboxylate transporter, DctP subunit [Ruegeria sp. TM1040]
MKFLTAAATALALSVTAGVAQADACDDGEIVVKFSHVTNTDKHPKGIAASLLEKRVNEEMNGTMCMVVYP
NSTLYDDNKVLEAMLQGDVQLAAPSLSKFEKFTKQFRLFDLPFMFKNIDAVDAFQASENGQAMLDSMQRR
GLQGLGYWHNGMKQMSANKPLVMPEDANGLKFRVQSSDVLVAQMEAIGGSPQKMAFSEVYGALQQGVVDG
QENTWSNIYGKKFFEVQDGITETNHGVLDYLVVASVDWLDSLEPEVRDQFMTIMTEVTATRNAESTRVNN
EAKEAIVAAGGEVRQLTAEQRQAWVDVMKPVWEQFSGDVGQDMIDAAQSINAGF
>gi|99081655|ref|YP_613809.1| two component, sigma54 specific, Fis family transcriptional regulator [Ruegeria sp. TM1040]
MTRKVLLVDDDAAVREALGQTLELADLNAVTAGSFVAAKDHITPDFEGVILSDMRMPGRDGFHLLSYAQE
VDAELPVVLLTGEGDIPMAVRAMSEGAFDFLEKPCEAATLMTVLERALKTRALVLENRRLQRQLERGDPA
ARMIFGVSPQIQELRARVRAAAATDAEVLVSGAPGSGIPKIAEVVHLMSRRGQGAFVKRPAAGLTPQTFE
ELCQTAEGGSLFLDELSAMPQETQYAVLARLEQGGGARIIGGSTVDLSERVAGGSFNAELYYRLDVMRVR
VPSLAERREDIPVLFRHYVSQAAEQAGIDAPEISPDTLASLMAQDWPGNARSLMSAAMRFVLGMPEEVAQ
ATDLGLAEQMAQVERSLLIAALGRQNGKAAAAAEALKLPRKTFYDKLARYGIRPEDYRR
>gi|99081656|ref|YP_613810.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MLNPRHPRLALVASVVLFIVVLSAVVWSSAYRQALTALAERSASDLALASDRVSTQLQIFREQAVLVVEH
PALQALETREGPARATALLRRIADKSGALDVFYADDSGRVLAAAEGVAGSNVSGRRYFRRAMQGAMGTEP
MVLPESKRRAYFFAAPDFGPDGRVRGTLVVVADIELVEQTWRGTLPPVYFTIEDGRVFISNRFELLFWRL
DDDKTGLMTADGGDLPLEVKKVGEHEIWQQRWSPYLPDEALHLGIGLPAIGMRGEILVDVTPAQRIAALQ
TMAMAAVCLAFGTILFWLAERRRTLAKANAELEERVETRTRALSDTNLQLRREVRERKEAEAALKQAQAE
LVQADKLSALGQMSAGISHELNQPLMAIQQFAENGQAFLERGKSERAGENLTRIAQMSARMARIIKNLRA
FARNESEPVGRVDLVQVIEAAVELTETRLRDHDVTLDWQRPEAQSVWVRGGEVRLTQVFVNLINNAVDAM
MGQEERRVRIVINDGARLTVGVRDIGPGLKQPEKVFEPFYSTKAVGSSEGMGLGLSISYGLVQSFGGNIR
GTNTEHGALFTVELDYWKEETAA
>gi|99081657|ref|YP_613811.1| cytochrome P450 [Ruegeria sp. TM1040]
MRHITKPPLPRPETSAKTDFMKTLTQSPTDPDFVQNPYPFYDAARAAGKLGYWEEYKMMAAFGHDVVHML
LRDRRFGREIPAEMATEGPAHLAPFLQVEAHSLLDAEPPRHTRLRKLVLRAFTSREIKALAPGLETLCHE
LINAFPKDAPFDLLSSYCTQVPVIAICRLLGVPEAMAPQLLDWSHKMVAMYQASKTTETEHAAAQASAEF
IAFLTDYVDERRKTPGEDLITRLIQAEEDGESLSTDELIGTCILLLNAGHEATVHSLGNGVKTMLEQGWS
SEWLQPDGISGLVEEILRYDPPLHMFTRYAYEEIEIMGHRFRRGDQVALMLAAANRDPEALERADQFDPT
RPPKVNKSFGGGLHFCVGAPLARMEMEIALPILFERCPELKLAEPPQYSNTYHFHGLTRLWVQTR
>gi|99081658|ref|YP_613812.1| hypothetical protein TM1040_1817 [Ruegeria sp. TM1040]
MGIFDFLKGEFIDVIHWTDDTRDTMVMRFEREGHAIKYGAKLTVREGQAAVFVHEGQLADVFTPGLYMLE
TNNMPVLTTLQHWDHGFQSPFKSEIYFVATTRFNDLKWGTKNPIMCRDPEFGPVRLRAFGTYSVRVVDPA
RFLTEIVGTDGEFTMDEISYQIRNIIVQEFSRAIAASGIPVLDMAANTADLGKLVAAEIGPVVAEYGLAI
PELYVENISLPPAVEQAMDKRTQMGIIGDLGRYTQFKAAEAMEAAAKTPNSGMGAGLGMGMGMAMAQQMG
HAMQGGATPQAAGQPTGPWGARPAPAAPQPAAQAAPMAPPPPPVEHVWHIAENGQTSGPYSKARMGRMAQ
EGQLTRDTHVWTPGQDGWMRAGDVTELAQLFTILPPPPPPPPPAGG
>gi|99081659|ref|YP_613813.1| hypothetical protein TM1040_1818 [Ruegeria sp. TM1040]
MTPKDAEETHRFPCEQCGADYRFAPAEGGLVCDHCGHKKELIESPWGGGALKELDFLQALREQLPAAEME
VTRVSSCPNCAAQVEFDPAVHALECPFCATPVVADTGENRHIKPKGVLPFQFDERAAHQAMEDWLGKLWF
APNGLKEYARKGRKMDGIYVPYWTYDAQTHSQYTGQRGTEYTVSRTVMVDGKPQVRSEIRVRWSNVRGRV
QRFFDDVLVLASKSLPRKYTEGLEPWDLSQLAPYQPKYLAGFRAEAYTIDLEAGFADARQKMDRIIERDI
KFDIGGDRQRISSVDTDVSAVTFKHVLLPVWMAAYKYRGQSYRFVVNGQSGRVQGERPFSAWKIAGAVVV
GLILAAGVAYLASQS
>gi|99081660|ref|YP_613814.1| D-tyrosyl-tRNA(Tyr) deacylase [Ruegeria sp. TM1040]
MRALLQRVSAASVTVDNAVIGEIGPGLLVFVCAMRGDSEAEATQLVQKIARLRIFRDDAGKMNRSVSDTS
GAVLVVSQFTLGADTRSGTRPGFSKAAAPDEGMRLYHCFCAKMRETGLTVQTGEFGADMKVSLVNDGPVT
LWLDTDDRRNTSAGSG
>gi|99081661|ref|YP_613815.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MNDYLKHLAQEAALGRMGRREFLGRAAALGVTALGANSLLASAAKAAGAQKGGTLRVGLQGGSTTDSLDP
ALATNQVALSVIRLWGEPLVELGEEGGLVGAVAESFEASADAKTWTFKLRSGLTFSNGQPVTAADVVATM
ERHSGEDTKSGALGIMRSISNVKADGDTVVFELEDANADLPYLLTDYHLVIQPNGGKDDPAAAIGTGPYV
LKAVDMGVRFVAEKNPNYWGDLGNAQTIEYVVINDNTARVAALQAGQVDMIDRVPPRTAKLVDRAPNISV
HSTAGPGHYVFIAHCDTDPFANNDVRLALKYGINRQEMVDKILNGFGSVGNDSPINASYPLFTQLEQREY
DPEKAKFHMEKSGYDGPILLRTSDNSFPGAPDAAALFQQSLAAAGINLEIKREPNDGYWSEVWNKQPFCT
SYWGGRPTQDSMFSTAYLSTADWNDTRFKNEQFDQTLLAARGELDEAKRTQMYADMSTMVRDEGGLICPM
FNDFVDATSDRLDGWKDGVKGHALMNGYAPLKMWVKA
>gi|99081662|ref|YP_613816.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MNPVIKLLAQRIALSLFLLLMISALIFAGTMILPGDVAQSILGQSATPEALANLRAELGLNEPALTRYFD
WLFGALQGDLGTALTSGQDITSAIGSRLSNTLFLAFWAAVIAVPLAIFLGLLAVRYKDRWPDKLISGVTL
ASISIPEFLIGYVLMYLIAVKLRWFPSVAMINDGMNLWQKLNSIALPVAVLTLVVLAHMMRMTRAAILNV
MQSAYIETAELKGLSTFKVIWRHAFPNSIAPIVNVVMLNLAYLVVGVVVIEVVFVYPGMGQYLVDHVSKR
DVPVVQACGLIFATVYIGLNMVADIVSILSNPRLRHPK
>gi|99081663|ref|YP_613817.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MKNIPVSALIGLFFTALYFLGALFAPLLAPYGMAEVVGDVWEPSSADYWLGTDNIGRDLLSRMIYGGRTT
IFIATMATLISFTTGSILGIFAAVSGGWIDQTLSRFVDLIMSIPTLIFALVVLSVTPVTVPMLILVMGLL
DSTRVFRLARAVAVDIEVMDFVEAARLRGEKTAWIIFREILPNALSPLVAEMGLRFIFMVLFVSTLSFLG
LGVQPPEADWGGIVKENKDGIVYGVPAALIPAFAIATLAISVNLVADWILNRTTSLKGGRG
>gi|99081664|ref|YP_613818.1| ABC transporter related [Ruegeria sp. TM1040]
MSEPLLKVRDLKIGATVYPPGEKPHDIEIVHGVSFDLMPGKVLGLIGESGAGKSTIGLSSMAYGRGGVKI
TGGEVWVNGRDILKSKLSDIRKLRGGEVTYVSQSAAASFNPAKTIMEQVIEASVEQGKFSRRVAEDRARA
LFAKLGLPDPDNIGARYPHQVSGGQLQRCMTALALCPEPDLVVFDEPTTALDVTTQIDVLMAIKEAIRDT
GVAALYITHDLAVVAQVSDDIMVLRHGNTVEYGSVDQIINNPQEEYTQALVSVRSIEHEEKAPTEEPILS
VRNITARYKGTKFDVLHNVNVDLYPGQTLAVVGESGSGKSTLARVITGLLPPREGEIYFNGRTLTPDFNN
RSREDLRELQMIYQMADVAMNPRQTVGTIIGRPLEFYFGLKGAEKRKRIIELLDEIELGEGFIDRYPAEL
SGGQKQRVCIARALAAKPKMIICDEVTSALDPLVADGILKLLLNLQKIEDVAFLFITHDLATVRAISDNI
AVMYKGKVQRYGGKTQVLSPPFDDYTDLLLSSVPEMKLGWLEEVIANRKMESAGN
>gi|99081665|ref|YP_613819.1| hypothetical protein TM1040_1824 [Ruegeria sp. TM1040]
MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLPSISASCYASIHTGVTPQEHGCTGNGN
VFRLSHDDVFSQVRKAGGTTGAVAHSFWSEFFNRSPFDYVRDIEYDEPESKTINHGRFHSMTGYGHDNQM
TPSDVDLFATLTNLCGRFDLDYGMLHTCTLDSMGHRFFHESAEMDKACFVMDEMLAPFIPRWRAMGYEVI
VTADHGQDERGHHGGRHPLQQETALYYFGDADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR
>gi|99081666|ref|YP_613820.1| hypothetical protein TM1040_1825 [Ruegeria sp. TM1040]
MKYFLALLAMAAATPALADSYCDDLWFTRNAIMDRAGYCFGSSLGKHVFDNGDCIGTSVTLSEMDATRVA
KLKAQEREAGCRVDTSRSRLDVLDLRYRQRLVDLPVTDGLESTCIGWRGDPLPLRAGHGLNTDVIGQVLP
GDTLNYGHYPVGGWSYVTVHDSDWHLKSAGWYRVDAYPQRCAQFAG
>gi|99081667|ref|YP_613821.1| Alpha/beta hydrolase fold-3 [Ruegeria sp. TM1040]
MSETVNVMDYEKLIDEETWNFIRETGRHYPDDTVDLTIDDQRAVYNKMAAAFRKPRAEVVDVTERSVGRV
LVRIYEAGDPTRTVMYCHGGGFVVGDLNSHDDVCSEICEQTGYRVVSVDYRLAPEHKHPAQFEDAWTVLD
WICETYPGGVVLAGDSAGAMLSACVAHHARGRHEGVLGQVLIYPGLGGDHALPSYREHAQAPMLTLEDVK
YYADVRADGTPVENDPTYAPLQDDDFAGLPPTVMFSADCDPLRDDCLVYRDAIHAAGGLAEWINEAGLVH
GYLRARHSVGRARDGFERIVLAIEGLGQEIWPYDD
>gi|99081668|ref|YP_613822.1| AMP-binding domain protein [Ruegeria sp. TM1040]
MAFATVADVAAIEQECTWQERDIPRTLYGLLSRTAERFPNNPAVSYQIFSGPTDKAETLTWRELKAKTCQ
AANLFRSLGIGEKDVVAYVLPNSNETLITLLGGAVAGIVNPINPLLEPEQIASILRETGAKVVVTLKGFP
KTDVPQKVAEAVAHAPNVKTVLEVDLNRYLTPPKSWIVPLIRPKVNKAHAHADYKNFNRELAKQPTELAF
ADSEGDRVACYFHTGGTTGMPKVAQHTYEGLIYNGWLGHTLLFSEEDNIMCPLPLFHVFACHVIVMAAVS
SGAHVVFPTPQGYRGEGVFDNFWKLCERWKITFIITVPTAISAKMQRPVNADVSTVKTAFSGSAPLPLEL
FRRFEEATGITIVEGYGLTEATCLVSCNPVEGEKKVGSIGIPFPYCDIKIVKGTPEGLQECGADEIGEIC
VQTPGVFAGNTYTETDKNIDLYYQDTHLRTGDLGRVDPDGYLWITGRAKDLIIRGGHNIDPADIEEALLG
HDAVAFAGAIGQPDAHSGELPCAFVELVDGASATEQELLDYCKRHVRERAAIPKHMTILPELPKTAVGKI
FKPDLRRHAITRIYDGALKDAGLAARVTSVSDDKKRGLVAQVSLNGSDTAAVGEVLSVYTRPWEEAKG
>gi|99081669|ref|YP_613823.1| ABC transporter, ATP-binding/permease protein [Ruegeria sp. TM1040]
MARGAVQNTASNEERETSRRIGVLKALWPFMRPYRGLIFAALAALTLTAGVSLSLPLAVRRVVDNFRITD
AALLNQYFTAAMIMAALLALGTGIRYALVTKLGERVVADIRKAVFDRIIGMSPAFFERIMTGEVLSRITT
DTTLIQSVLGSSASIALRNLLIFLGGLVLMLLTSAKLTAMVLLIVPAVIVPILFLGRRLRVISRENQDWI
AASSGNAGESLGAVQTVQAFTHEDLSRAHFSEMTETSYEVSKRRIQTRALLTVIVIFLVFSGVVGVLWIG
ANDVRFGSMSEGALVQFVIYAVMVAGSVAALSEIWSELQRAAGATERLVELLQAEDSVRDPEVAQVLPEP
VRGELTFDTVSFTYPSRPDVSALDQVSLTIAPGETVAFVGPSGAGKTTIIQMIQRFYDPQSGEVRLDGVP
LQALARDDFRRHIALVPQDPVIFAATARDNIRFGRPDASDAEVEAAAKAAAAHDFIMKLPEGYDAYVGER
GVMLSGGQKQRIAIARAILRDAPVLLLDEATSALDAESERLVQAAFEDLSRDRTTIVVAHRLATVKKADR
IVVMDQGRIVAVGTHESLVAEGGLYARLARLQFTDGQAQG
>gi|99081670|ref|YP_613824.1| hypothetical protein TM1040_1829 [Ruegeria sp. TM1040]
MFRSVAIKAIFSIAAFASSVSALEFRITASGLDKDRHSYELELMELALSKADGDHTLTLVDPGNSNQTRL
LAQLAAGSEEFDVIFSGVSKERYESLTIVPIPLQRGLLGHRILISNEDSLPALQTVETFEDLKKIRIGSG
TGWPDTEILESAGLNVSAAAYENLFTMTDKGRVQGYARGVAEPFAEVTKRSESHPNLRVDSSLMIVYPFD
TFFFTGPEDQERADIILQGLERAYEDGSFMAHFNSHPNIQSVFEQAQIDNRLRFDIPNPLLPEEISNLPD
HLWHGR
>gi|99081671|ref|YP_613825.1| hypothetical protein TM1040_1830 [Ruegeria sp. TM1040]
MSDGTTSGWQRFDKAAFGIIYGAIMVLSIMLAQGGHPTPPLETAIVLFGSVLAITLAKAFAELLSHALDT
RERMTRGSWRAAWHHSTPTLAVANVPTALFLAAWQGWIGEETALFLSQVMCVTLLALLGGRAGWVLDRRL
LPALLGAGFAGGVGLLLANLKHIIH
>gi|99081672|ref|YP_613826.1| protein of unknown function DUF900, hydrolase-like [Ruegeria sp. TM1040]
MKTFLPAVARSISVILCLGGPFGVIPAPLAAQSEAQSEAQSETQSEIEVAEFPYVTLRNRTGSDDPAEFY
AGERSDPKAGRCRVEELDLGVLAPLAGVAPNFLREELLRVQAIEEAPTGAILDQLEATAGAQGPALYVHG
YYISFEKGCRRAALLQQNADLEGRLLWFSWPSDGAAAYYTHDEVDLYWSLPDLADTIIELHERFGPGEVA
VMGHSLGARGVVLALAEVANRRPDMQLGQVVLLAPDMDFGIFERILPRIRPIAENLTIYVTSGDRPLALS
AQVHGYPRLGEAGNPVSRLTGVEVIDLSDLPSEGPTGHLYHIYSQIVGADLSRLLRSGEGASERPGLVAQ
SKNLWRLRPEKRE
>gi|99081673|ref|YP_613827.1| hypothetical protein TM1040_1832 [Ruegeria sp. TM1040]
MYNTRIARITGKVSIPCVLLGLLCFAASLTPSLIPRGPMAQGILGGLVMAIGYLIGHIVGLLWRAADLPR
LPRRAERGLTQVIAIVLAGVFLWVLGSSLRWQNDIRAKMGMEEADALQLATILVIALATFTLAFALGRLV
AALFRLIRSWFYRIMPPRRANVLGVVAVVLILFLGTRDGIIDRLVTGLDESYEAAQELFDKAPPPPAAPH
LTGSAASLVDWASIGKPGRDFISSGPTAEDISAFTGQPARDPIRVYVGRASAETPEARAELALAELIRQD
AFARDVLIMTSPTGTGWMDPGSHDPVEYMHGGNIATVAVQYSYLQSPLALILETRTGLEQATALQDAVHG
YWKTLPADARPRLYAHGLSLGAWSSMHATNMFRLLNDPIDGAFWAGPPFPSTFWNYVQNRRNPGTPWVLP
EIGDGSLVRYASHTADASEAAAEWGEMRIVFLQYSSDPVVFYDPRSLWRAPPWMRDPPAADMTEHFIFMP
VVTQFQLALDIALSFGAPPGHGHAYYARDYIGPWLQVTAPRDWSPEDTARLIAHCNTGFQQGCANARR
>gi|99081674|ref|YP_613828.1| hypothetical protein TM1040_1833 [Ruegeria sp. TM1040]
MKRFALTTAAISALMAAPAMADLNTAAAQTFTEMKEAYPAIDRKIFEQVDVNKDGVADMAEVDAAEQSGV
LNDDMSAAEATGTYDPSPYGVEEAGALTFAELKDAYPSLTKKVFEEVDANKDGVADMAEIDEAELSDVLE
PGIGNTAEGQSYNQG
>gi|99081675|ref|YP_613829.1| RTX toxins and related Ca2+-binding proteins-like [Ruegeria sp. TM1040]
MPTIYDSFADTPGSAVRLDVGSPYEVRLTQAELDAAATFGNPEYDYFEFYADPFTTYTVQVIAANDAIDQ
SLWLPSPTWPGYNTEFGFSAPDGTMVTLEDGYSVRNWDPGDRLITTLYDGGLVRMAVRFDGWLQEYRTGE
DLSDLPGSDRSFFIRIVEGDVAGTQPQIDTVGTGPDALEVSPEDASGIITGELEDLEGTPDVDEYLFTLR
AGFHYDVVVRGATGAQSGESPGVFRVTVSEENGASSWTLESDVDRMSTGDVEQTITSVRIGDGFGSLLLE
PGEEIDVRVSIQSIYDPNREVSPYQTGGYSVGGYEIEILPTDDDHGNNRLTPSTISVGGWQSGTLNPYYE
ISAAEPFGDRDWMEIVGGVEEGRYYVASFDYSDGRPFSMFASFHNSVSTETVRAPDYAIWQPNYTGAAWL
EVDSNFIGSADWRVSLGSYETLELGNRSDERLTGTAGENFLDGRGGADLIVGRGGADQLIGNGGNDTIKG
GGGHDILSGGAGKDVLKGNGGNDALNGGGGRDKLIGGRGNDTMSGGDVRDVLKGGGGNDVLDGGEGRDKL
IGGSGNDTITTGFDGDVVRAGSGIDTIIIAGPEGDRDLRIRGTMDDGDILDLSALNIDSYFVEDSFAGGG
ASSVRTRGDGLGYDIDFDGDGIGDRSIFFDSSEDADLVDLEGVAVRTPATYYEYLAETLTPLEWTPTRER
YVLDSYGTFQYDLISGTSGADLISNDGRADNYLYRGQVRAGAGDDIIDMQLHSSLTYYGGTGDDYFVWQP
PVDPNYALWIRLNDFRQYGEEDYIVVRSDIWGEGVSIDNITFDRMRSDGDYLEAHIVGTNGLEGTISVTQ
PFRSSDPLRNNDATSADFLNVDAFIFV
>gi|99081676|ref|YP_613830.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Ruegeria sp. TM1040]
MTAHSARPRIAILTSHGQPSAPPPPEIHLAAVAAAVQDHLPDWEVRSATLSSKGFLEAAMREDGAVIYPF
FMARGWFTGKVLPGRLKGWRYRMATPFGLDPALPALTVAAIRSALHARGWKVAESEVLLAAHGSARGPKA
AEAAEAFASTLRAQMPELRLTTGFVEETPFVAEAARNCGAQSLCLPFFAQTGAHVREDIPAALAEAGFEG
DLLPVLGALPGVAKLMADAIERAAETELSSPPAA
>gi|99081677|ref|YP_613831.1| L-glutamine synthetase [Ruegeria sp. TM1040]
MDLSALKTIRIAACDLNGQMRGKRLPAGMAAKLGEGSARMPFSVLNVDIWGRDIEDSPLVFETGDADGIL
LPTKRGAVPMPWLATPSALVPMKMVHEDGRPFLGDPRQVLAHVLDRYAEKGWQVAAATELEFILVDDAGT
EPLPPIDPLTGRALDQQSVLSIAELDAYDDFFTDLYDGAEAMGIPAQDAISEAGLGQFEINLTHQDAMRA
ADDTWLFKALVKGVARKHGFAATFMAKPYAEESGNGMHVHFSVVDKDGVNIFDNGGPEGTPALHAAVAGC
INAMRDSSLVFAPHGNSYDRLVPGAHAPTSAAWAYENRTAAIRIPGGSPKARRIEHRVSGGDINPYLMLA
TVLGAALIGMEDGATPPPPSEGNIYDIDGLPQLAGSWAEAIDLFENSPLIARILPPMAIRNLVMTKRQEL
KGFAERPPESHWLSWLEAV
>gi|99081678|ref|YP_613832.1| glutamine amidotransferase, class I [Ruegeria sp. TM1040]
MKIGILQTGHAPDELKPTSGNYDAMFRKLLAGHGFSFDTYPVLDGVFPEGAEAADGWLITGSKHGAYEDH
DWIPPLEDLIRQIHARKMPLVGICFGHQIIAQALGGKVEKFSGGWSVGHTQYRLHGAPVELNAWHQDQVV
TRPAEARVIGESDFCANAFLAYGDHIWTSQPHPEFENTFVDGLLRTRGKGVVPDAQLNAAEASLDRPTDS
TQIAQEIADFFKKVRT
>gi|99081679|ref|YP_613833.1| L-glutamine synthetase [Ruegeria sp. TM1040]
MPTPTRWQEKLPEAATTYLEGRRLDEVECVISDLPGIARGKAVPASKFAKQDYFYLPDSIFYQTITGDWA
EAADEDGWIEKDMLLRPDMSTATAAPWTGDWTLQVIHDAYDRDGNPIPFSPRNVLKHVVSLYEAQGWKPV
VAPEMEFYLVARNVDPARDIQPMMGRSGRPAAARQAYSMTAVDEFGPVIDDIYDFAEAQGFEIDGITQEG
GAGQLEINLRHGSPVKLADEVFYFKRLIREAALRHDCFATFMAKPIADEPGSAMHIHHSVIDIESGENIF
SGPQGGETDAFYHFIGGLQNHLPAGLAVMAPYVNSYRRYVKNHAAPINLEWARDNRTTGIRVPLSSSASR
RVENRIAGMDCNPYLGIAVSLACGYLGLMEERRPTRQFKGDAYEGEGDFPQVMGQALDLFDESKALHEVL
GPEFARVYSTVKRAEYEEFLQVISPWEREHLLLNV
>gi|99081680|ref|YP_613834.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MTLNLLHANDRPGKYPQSWYAATATPGVHYPSLTGGVRADVCIVGAGYTGLSAALHLAEAGRSVVLLDAQ
RVGFGASGRNGGQLGSGQRQDQEVLEKMVGAEDAAHLWRLGEEAKDLVKDLISKHQIDCHLKPGVAWTAE
RSGDVTHLHDYGRHLEDRYGYDQIEFLDQDACHAMCPSPAYKGGILDHGAGHLHPLNFALGLARAAAEAG
AQIYERSEVFAIEDGPQVEVRTGEGTVRADHVILACNGYLGGLNEQVATRVMPINNFVAATEPLGDDAAQ
VLARDVAVADSKFVVNYFRLSHDKRLLFGGGESYGYRFPSDIAAKVRKPMTEIFPHLHDVKIDYAWGGTL
GITMKRLPYLARVSPRILSASGYSGHGVGTATHAGRLLAEAIAGQSEGFNTMARIPTTPFPGGPRMRSPL
LVLAMTWFSLRDRLGI
>gi|99081681|ref|YP_613835.1| DegT/DnrJ/EryC1/StrS aminotransferase [Ruegeria sp. TM1040]
MKQASSPQVPNTEVPNVHQGEPIPEAARDAIEALMQSGDLFRYTAPQDAPVSLLETEFAELLGSKYALAV
SSCSAALFLSLKALDLPRDARVLIPGFTFAAVPSSVVHADCVPVLCEVGENYRINMADFEAKLDQDIAAV
IISHMRGHTSDMDAIMALCEARDIPVVEDAAHSLGTTWHGRNIGTIGKVGCFSFQSYKMLNAGEGGILVT
NDADVVARAVIMSGAYEHNWQKHKPARGDNGTALAEAFGRWQNLLPLYNLRMSNLSAAVIRPQIPELARR
VADGLKNHDYVAAKLNAHANFHVPAPLAPERRAPDSIQFNLVGMDDAQIEAFAKATADKGVKVQIFGRST
DNARAFWNWQFLKDLPELPETRAMLMRACDVRLPVRLTQDELDVIAQILLSSVEETMARAAA
>gi|99081682|ref|YP_613836.1| polyhydroxyalkonate synthesis repressor, PhaR [Ruegeria sp. TM1040]
MAEQDKPLLIKRYASRRLYNTETSDYVTLEDIAGFIRDGREVQIIDLKTGDDLTRQYLLQIIAEHESRGE
NVLPVNVLNDLVRSYMVPGGGVMPQFLQASFDMFRDSQSKMMENMNAMNPMAQMPGFEAMKAQQEAFLKA
MTGGFGGGWTGGGGEDGSPAAEGEEDLGDIKRQLAELQEKLSKLS
>gi|99081683|ref|YP_613837.1| phasin, PhaP [Ruegeria sp. TM1040]
MAKTQDFSAMMKDMMASFPVDTSAMEGFFKSSAALNEKLSAVALDAAEKNAEISSKWTKDTLTKMGEISK
AKTEPADYAKAATDFASASAEVAAENMAAFAEVAKKVQMDTVELLMAAGKDMSEEASAVVKKATEEVSTA
AKKAAAAK
>gi|99081684|ref|YP_613838.1| hypothetical protein TM1040_1843 [Ruegeria sp. TM1040]
MGAGDQDQMRASPAPSLRLPGDCISGGGAAISLFMPSGLISATKRPRHRDPALRRGTQTTDRQTTSGSIT
STGQKRRVCLDGPHWRSRGARASGFSMRAVRHGRFAAPGLWSPRDARPRN
>gi|99081685|ref|YP_613839.1| hypothetical protein TM1040_1844 [Ruegeria sp. TM1040]
MPPAPASKCSLLLARFQPRRVSRGASWLGLSLTFCLLALLLSACGRSPTEREQMFLGKIHGESLDYSRLR
LVEGAPLRAVTFRRPQRPRVTCRERILPPRPAGELVTASPAALALFNHIFFTRDWFLPDYTPEYPEALHL
VEAMLLAHEATHVWQWQNRAVTGYTPLKALGEHSRSSDPYLFDLDGPADFLAYGYEQQGTIVEEYVCCRA
LAPDAARTQRLHAMLARVMPVSDLPQSRESDVYLPWKDAKVAGICD
>gi|99081686|ref|YP_613840.1| ABC transporter related [Ruegeria sp. TM1040]
MSEVTLKIEGLRKTYLAGTPGEVAVLRGVDLTLHAGEVVALVAPSGAGKSTLLQIAGLLDVADAGRVEIA
GQDMAGARDRKRTRVRRQDVGFVYQFHHLLPEFSALENIVLPQLANGISQRDAEARGAELLALVGLETRA
AHRPAALSGGEQQRVAFCRALANRPRLLLADEPTGNLDPATSDQVFEVLMQLVSETGLSALIATHNLELA
ARMDRVLHLEDGVLVER
>gi|99081687|ref|YP_613841.1| LolC/E family lipoprotein releasing system, transmembrane protein [Ruegeria sp. TM1040]
MAATAPFSRFEWMIAWRYLRARRSEGGVSVMTWISLIGITLAVFALIATLAVRSGFRSEFVGTILGANAH
ATVYAHGTVTAAGTLDRRITDYAALAEAVGQVPGVLQAAPLIKGQVMASRGDRNAGVQVYGIHAEDLAKI
PGVAQSDVAYGDLGRFDDGIALGSGVARTLGLGIGDKVKLISPNGVKTAFGTSPRVNAYEVVYVFTAGRY
DIDNTRAYLPFAEAQSYFNREGVADEIEVMVADPEAVDQYVLPLLQAAGQGYGVWSWRDSSGGFLRALEV
EDNVMFVILSILVLIATMNIVSGLIMLVKNKGRDIGILRTIGLSEGSVMRVFFICGSITGVIGTVLGVIL
GCLFAIYIDPIFSFVNYVMGGGVWDPSIRGIYALPAELRAGDVISAVSLSLGLSFVVTIFPARRAARLNP
VEALRYE
>gi|99081688|ref|YP_613842.1| hypothetical protein TM1040_1847 [Ruegeria sp. TM1040]
MITRMVTLLGGAGAGLGLSQFPAYAQAYLQRLGGHVDALRRTVAEFDADAAALGLERHAALVQLAQGGEM
GAARAETMAATIDRYGRLSSDLHELSAMAPVERALHLGRFAEAEIASATLSAFEPAVAVSLDALLLAAIG
ALVGGGLIWGMMAGGRRVLARRPAGRDRLA
>gi|99081689|ref|YP_613843.1| thioesterase superfamily protein [Ruegeria sp. TM1040]
MPAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVVNVQSNFRAEL
AAGDAIRLETSIIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEARISRDIPDEVRARASQFLEEA
>gi|99081690|ref|YP_613844.1| hypothetical protein TM1040_1849 [Ruegeria sp. TM1040]
MDRSPYYGTDKIMALQRARDAQVADFADLAGAVIHARTFSSDDPAALGWDYLKKVMADEGMVTLRGADQA
TIAAAKSELSDFDPRLHVWDLFMADAETIRRVCDPIVQNSLPAGMRQISEAEMTPEKAREVQVFLTQQGV
SPFSTDALLGRLFPARLIALQNASDRIAAAGFAAMTHNRHSPFFNSAWVGLIAVDPELRGLGLGKHVDAI
CNLVAVTELGAAATMEFVAPDNAPSRAMLESCGLRQVEGKSVVMFSTSTDRLTR
>gi|99081691|ref|YP_613845.1| bifunctional deaminase-reductase-like [Ruegeria sp. TM1040]
MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFGMEPGQNPYPH
MRSIVVSDSLQLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAGWMLKHQLIDRLILKRAPCVL
GQGVPLFGADAPAVTMERTATTPYQNGYLLERFLLR
>gi|99081692|ref|YP_613846.1| hypothetical protein TM1040_1851 [Ruegeria sp. TM1040]
MQLSLDDPLWDHLPGAHGVEDVRGPLSSLLAEWDPELCNMLLWDRLYHQESLYPATWAALPWLWQIAGRH
ADAVAPLFDFFAHLLALAKRTPASYCAYEGLPLSGADLGHWHVSAPPAMIPPADALFEALVVWIEPWAVQ
VCRALNTLIEGADRAQAAHYLRGVTAWEHPEHESFERALGFLADGWSIEEMLETLEADEDVPFHMSARDI
SFAAQEAARLQGLCPDLATDIRALVDAVSTDRPETPTQPHPDQKSLFR
>gi|99081693|ref|YP_613847.1| prolyl-tRNA synthetase [Ruegeria sp. TM1040]
MRLSRYFLPVLKETPSEAQVVSHRYMLRAGMIKQSAAGIYSWLPLGYRVLKKIEGIVHEEQMRAGHIPML
MPTIQSADLWRESGRYDAYGEEMLRIRDRHDRDMLFTPTAEELITDIFRANVSSYKDLPLTMYQIQWKFR
DEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVTYLRTYERMGLQAIPMRADGGPIGGDYTHEF
LVLAETGESEVFYDSEITDLTFGAREIDYDNVEQCQAVLEEFTSRYARTDETHDEALFNAVPEERRRVAR
GIEVGQIFYFGTKYSEALGATVQTADGQSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCG
IVNLKQGDDEADAACEQLYAALTAIGLEPLYDDRKERAGGKFASMDLIGLPWRITVGPRGLKNGVVEVTS
RRTGESEEMSPEDAVKKIAAIYANHPTPRGF
>gi|99081694|ref|YP_613848.1| hypothetical protein TM1040_1853 [Ruegeria sp. TM1040]
MQLARIHPVQARKAPAQVKRSDVCDGGDWMTRSACGAQRNTPALISAFSEKLWRDSHRDVEICADELNAA
LIICDTKMQSALNLCWVERISENENRFLLFAFSELFHLKI
>gi|99081695|ref|YP_613849.1| GAF sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MTRAAKLTPDPYDVQLRELGLVQRQPDSDIDNLTRLAAQVLDAPTALVSVVQRSLDRQFFKSCVGLPELS
SVLRQTPLSHSFCQFVQDANQPLIVPDSRNDAQLRDNAAVIDLKMVAYLGVPIHLPDGTPIGALCVIDRV
PRQWSSDNLKTLQHLAVAVDNVIALKHARELAAEAERTAKREAEARKTYLAHMSHEIRTPLNGIIGSVDL
LLREASRVNLDPREQNDLLRTINRSARNLQHLLNDALDIAKIDAGKLELAPAAFDLHETVDDVMKLFSAQ
ACEKGVELNHSFRGIEAQEQRYGDRFRLAQILGNLLSNAIKFTDDGSVSLQINGTPDALHLTLRDSGCGI
APDRLDKLFLPYTQASADVAQTKGGTGLGLTIVHQMVELMQGRIRAESVPGRGTVFHLYLPLPLTTSAPE
AEKVHDPARDGIGDTAPVASPPPAPSNAPLSGKRVLIADDSPANRLVLQKMLENLGATVDKAFDGGDAFG
RAVARAYDVLLLDIHMPGQTGTEVVKKLRADPRHQAHDALCIAVTGSTEKQEVEHYLDSGFDAWIGKPLR
QSDLMRVLSPLLLEPPSRA
>gi|99081696|ref|YP_613850.1| hypothetical protein TM1040_1855 [Ruegeria sp. TM1040]
MALPARKQLKYWGIAAVLFAVVMWALGNVLMPFILGGAIAYIIDPLADRLERAGLSREGATAVITVGAVL
IFLILLLLIVPALINQMIDLVQTLPQALSNLRAFAQERFPSLFEDNSQLREALAGLWQIIQDKSVTLLQT
FVGSAMSLLNIVVLLVIVPVVAVYLLVDWDRMVARIDELLPRDHAPVVRHLASEIDRVLSSFIRGMGLVC
VILGTYYAVALMLVGLNFGLAVGFVAGLVTFIPYLGAIIGGVLAIGLALFQFWGALEGADGEMIRQGTDW
LRIALVAGIFAIGQMVEGNFLTPKLVGNSVGLHPVWLLLALSVFGALFGFVGMLVAVPVAAVIGVVARFA
VEQYLHSRLYQGLSHRDANVRTSEDTPTDI
>gi|99081697|ref|YP_613851.1| chromosomal replication initiator, DnaA [Ruegeria sp. TM1040]
MSEQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKLVLTGPKGSGKTHLAHVWAKESGARVV
PAHALTEADVPELASGPVAIEDVPDIAEDALAQKALFHLHNMVLTHGHRLMLTGRPAPNLWGLGLADLQS
RVQAATHAALEAPDDALLAVVLAKLFNDRQITPKPDVIPYLVGRMDRSFAAAAAVVEQLDRLALAEQRTL
SRALAIRLMSSDQKG
>gi|99081698|ref|YP_613852.1| Ppx/GppA phosphatase [Ruegeria sp. TM1040]
MTIQPDAPHRDLDTTPPVADAPEAAAPDAAAEDWGPFGRPLFDDPDARALSRVGVVDVGSNSVRLVVFDG
AARSPAYFYNEKIMCGLGAGLSETGKLNPKGRARALEALKRFQMLAKGLLSDPLTVVATAAVRDASDGPE
FCAEVEAATGLRIRVITGEEEARLSAQGVLLGWPGAYGLICDIGGSSMELAEIQDGEVGRCVTSNLGPLK
LKDIKGGRKGRKAHIDEVMASLRDQLGDQRDRLFLVGGSWRAIARLDMLRRNYPLTVQHEYRMTAKDVRE
TIKFIEQNDLEKLRSDCGVSSARMALVPYAIDVLARLIKTFRPKDIAISSYGIREGLLYEQMPDRLRQRD
PLIEAARFAEAKDARVPGFGKTLYTFVKPLFSGAPYAKMRLVKAACVLHDVSWRAHPDYRAEVCFDNATR
ANLGGLKHSERIFLGLALLHRYRNKRQGTHFEHLYDLLPSEKQKEAEILGKAMRFGAMLMVGEDQDIGRL
RWQPRKRTLHVELPAESAALFGEVAQSRLMSLVNTLKAEVRVSVAGRRGALLEKDARD
>gi|99081699|ref|YP_613853.1| hypothetical protein TM1040_1858 [Ruegeria sp. TM1040]
MTLVRARYTWLMIQHRHITSRLGLALGVCLALAGPPLSAQEAPTENNGADGPSLMERGMELFFEGLRREM
EPTLEEAARLLSEVGPSMRSFLAEMGPALAEIADQVEDWSVYEMPEILPNGDIIIRRKDPKPEPAPAPQP
DDSIEL
>gi|99081700|ref|YP_613854.1| endonuclease/exonuclease/phosphatase [Ruegeria sp. TM1040]
MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIADVLRAIDADGIVIIEAPNSGKHQSTER
ALVRFAEWAGLRTRDVVMGFANDTRQEIAFLFDSNVLTAEHAPLDTARAPRFDGTFEMDLDVDAKADLVR
FSKPPMELLVTPRTGPPFHLIGAHLKSKAPHGARTPEEARAMSIANRRKQLAQAVWLRARVEDRLEAGAP
LVVMGDLNDGPGLDAYEALFGRSSVEIIMGQELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQALLDY
IMISPPLQACAPRWRIWHPFEDAACYGTPSLCHALLTASDHFPVTLDLDLTQASRPEDGGDLQI
>gi|99081701|ref|YP_613855.1| heat shock protein DnaJ-like [Ruegeria sp. TM1040]
MSIWTRITEALAALTQGESLAQVFDRLRTPPERTVGFTIAVIALGAKMAKADGQVTRDEVAAFREVFQIA
AEDEAQAARVFNLARQDIAGYDDYARRIRAMFSDDPETLCDLMEGLFHIAIADGFYHPNEDVFLEEVSRI
FGQTDAQFRSLRARFVEDAPKDPHEVLGVSPGTPLEDIRRIWRRLVRDNHPDAMMARGVPPEAVQLAEKR
MIDINRAWEEISGKAQARDHAPQHV
>gi|99081702|ref|YP_613856.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MAPRIRAARDGDTEAITHLQRHIIDTTLATFATEGRSLSDWQDDILYGDPPILVAEAEDGQFLGYATYSG
FRSSEGYRHTGEHSIYLTEAARGQGVGHKLLSELENRARAAGIHVMVAAISSANPAAARFHARCGYAEVG
RMPQVGRKWDQWLDLILMQKILREQGTAPPDSAQRSR
>gi|99081703|ref|YP_613857.1| hypothetical protein TM1040_1862 [Ruegeria sp. TM1040]
MSPRYAPRHKDIAMELDHFAIAAPTLSEATAYVEEALGVPLQPGGAHQVFGTHNRLLGLAEGLYLEAIAI
DPEATPERQPRWFDLDRFEGAARISNWICRSTDLEADLAALPVEAGTPVALTRGDLAWQMAVPATGCLPF
DNVFPALMRWQGPHPAPRLTQQGCSLRRLVVAHPEARALAEMLPLRDARVVFELGPAALRAEIDTPHGLR
HL
>gi|99081704|ref|YP_613858.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MNTPQTPEDWAAEHILGIYETHLPVRDLDRSLAFYTGQLGLKLARRLPERDVAFLWTGPKEVGMLGLWGA
GSAPLGMSLHFAFRATKAAVLGACTQLPAQGITPLGFTGDPITEPVVLGWMPAISVYFKDPDGHSIEMLH
MLEDAADPAFGVQSYSDWQNRASQA
>gi|99081705|ref|YP_613859.1| hypothetical protein TM1040_1864 [Ruegeria sp. TM1040]
MRDPAFKGRVYLSGHLFCASAQEQALVEQYLPEHIRLTRAEPGCLSFEVT
>gi|99081706|ref|YP_613860.1| methylmalonyl-CoA mutase [Ruegeria sp. TM1040]
MGTLPGFGPFTRGVKATMYAGRRWTIRQYAGFSTAEESNAFYRRNLAAGQQGVSVAFDLATHRGYDSDHE
RVVGDVGKAGVAIDSVEDMKILFDGIPLDQVSVSMTMNGAVIPILASFIVAGEEQGHDKALLSGTIQNDI
LKEFMVRNTYIYPPEPSMRIIADIIEYTSNEMPKFNSISISGYHMQEAGANLVQELAYTLADGREYVKAA
IEAGMDVDKFAGRLSFFFAIGMNFFMEAAKLRAARTLWHRVMTEFGAKSDRSKMLRTHCQTSGVSLQEQD
PYNNVIRTAYEAMSAVLGGTQSLHTNALDEAIALPTDFSARIARNTQLILQEETGVTNVVDPLAGSYYVE
SLTAELVDKAWAMMQEVEEMGGMTKAVASGMPKLRIEETAARRQAMIDRGEEVIVGVNKYRKDKEDPIDI
LDVDNVKVRESQIARLEQIRASRDAAACEAALAELTRRASEGGNLLEAAVEAARARATVGEISMAMEKEF
GRHRAEVKTLAGVYGAAYEGDEGFAAIQKSIESFAEEEGRRPRLLVVKMGQDGHDRGAKVIATAFADIGF
DVDVGPLFQTPAEAAQDAIDNDVHVVGISSQAAGHKTLAPQLIAELKAAGAEDIIVICGGVIPQQDYDFL
YKAGVKAIFGPGTNISTAAQDILELIREARS
>gi|99081707|ref|YP_613861.1| hypothetical protein TM1040_1866 [Ruegeria sp. TM1040]
MKVILHIGAHRCATRSFQNYMTRKSDTLSQYGIAFMGPERTRNGLLHGIQPGAISVTGRDPMARARGRIA
LQLAGLQNAGTASVVISDASMLQPLEQCFALGALYPAAGEHLARLDHAFDGAVSDVMLNIRSPEMFWASA
LAVRLEHSLRMPNAATLSRIAEATRSWRDVIQDIYCAMPGARIRVFPYEVFATQPEAQLSAVTGVDCPHA
RGAFRLNASARLPELRAELPPRLAKLLPEDEGRWMPFSEAEAARLRESYYDDMMWLVGGADGLAELVEDP
NKADATATPPAPDLVVQEDLTRGRMHDPDTGRLAGTG
>gi|99081708|ref|YP_613862.1| hypothetical protein TM1040_1867 [Ruegeria sp. TM1040]
MNRLQRLTLLAALTALPLAQSVSAQEAEGQSPAPDATLSEDAAPADLSAEEAAPAFEIRDGYDVDIAEYQ
WTHRPVVVFADSPADPRYQEQIDELLQDIPALMTRDVVVFVDTDPKARSALRKKLRPRGFMLVLLGKDGG
VKLRKPLPWSVRELSRTIDKMPMRQREIEARREG
>gi|99081709|ref|YP_613863.1| hypothetical protein TM1040_1868 [Ruegeria sp. TM1040]
MLCCRLWPANVLIVPILPERFFVSLPHPPSRPRRLLRAFAGVALAAVVTGSCSLDQEEQVRAQVQDWVKL
GETYYFFSRVNCTAALFEVKASRISSKVKKVRDVEAGMRAISEEIAVAFEVEGLSPTEVTEEIMNRDLPM
GIGVLSSGTGGKDCMAIEMEEAYFNALLDPTSALIYHPTAKFTVVFDRRNRRIFYSRGRTS
>gi|99081710|ref|YP_613864.1| carbamoyl-phosphate synthase L chain, ATP-binding [Ruegeria sp. TM1040]
MFEKILIANRGEIACRVIKTARKMGIKTVAIYSDADRQALHVQMADEAVHVGPAPANQSYIVIDNVMAAI
KSSGAQAVHPGYGFLSENAKFAEALEAAGVAFVGPPKGAIEAMGDKITSKKIAQEAGVSTVPGYMGLIAD
ADEAVKISNEIGYPVMIKASAGGGGKGMRIAWTDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIE
IQVLCDAHGNGVYLGERECSIQRRNQKVVEEAPSPFLDEETRRAMGEQSVALAKAVGYASAGTVEFIVDG
DKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGKELSITQNDVKLTGWAIENRLYAEDPYRNFLP
SIGRLTRYRPPAETAAYTPGVAPGDAGDVVVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRDAAIEAMRA
ALDSFEVEGIGHNLPFLSAVMDHPKFVSGEMTTAFIAEEYPEGFDGVDLPESDLKRIAASCAAMHRVAEI
RRTQVSGRMDNHERRVGNTWVVAIGGQTYELRVAADPEGATVRFEDQSEIRVSSDWTPGDSLAHVDADGT
PLVLKVDKITQGFRVRSRGADLKVHVRRPRQAELAALMPEKLPPDTSKMLLCPMPGLVVKINVEVGEEVQ
EGQALCTIEAMKMENILRAEKKSVVSKINAAAGDSLAVDDVIIEFE
>gi|99081711|ref|YP_613865.1| putative lipoprotein [Ruegeria sp. TM1040]
MRKTLISALLAGTAALAACGDTTGEQVLYGAGAGAAGAALLNGSLVTGAAVGAAGNLIYCKENPGRC
>gi|99081712|ref|YP_613866.1| hypothetical protein TM1040_1871 [Ruegeria sp. TM1040]
MGSDRLGFLAPIPCAQRLRLRRHICPASSAQMRPGFARKLAFHADVTGDLSPMRMICAQRIWTICVVLAH
LQPNVLKDPKEHPDA
>gi|99081713|ref|YP_613867.1| hypothetical protein TM1040_1872 [Ruegeria sp. TM1040]
MLKHRGFPGRLPGTDFQFVIRRPNPKGVTPITRRERFRDRKPADRRADAGFMKALWENFGDQPFERGNLD
AGRLSWLFGREVVAVDDPFDPESYESLLVIDVEVARRSFPEAFEG
>gi|99081714|ref|YP_613868.1| putative lipoprotein [Ruegeria sp. TM1040]
MSKSIKFITLAGLLAAVAACAGQREEEFVVVEPEPISQEPVYTGKYK
>gi|99081715|ref|YP_613869.1| hypothetical protein TM1040_1874 [Ruegeria sp. TM1040]
MPSGQPVTLSEVLLDDAPGALWARFRFVAPEMAQMADQTTSLADMEHLCTAVAVPYLSYHDIKAERVVVS
FSDQNLPFGQRAPDVTQYFETYRIEDAACVWEGF
>gi|99081716|ref|YP_613870.1| hypothetical protein TM1040_1875 [Ruegeria sp. TM1040]
MSARWHITRGAGGLTLSRQMPARFDVVASTTLPQGDPLRLAHQIRQDMWRKLQKVRGFSPVVQLTREGDV
IRVEAGGRVAAPVAPGLSGEIADLLACPAHRARWVAQATRSGRRL
>gi|99081717|ref|YP_613871.1| hypothetical protein TM1040_1876 [Ruegeria sp. TM1040]
MRYLFACLLIAAALPAAAAQPSAACKGQQSYALSDGSSWCLLHSDKTTLTSTLSRDDGNSKSNSSQAHIF
VVAMNGAFSKRMGTSEKRMKEICQVMRSKSPDLFAGRTRDRNIIVSMLWPEKAAAEGLSNLDHRFPNQAA
AMTKKCSALRHFGVRSR
>gi|99081718|ref|YP_613872.1| propionyl-CoA carboxylase [Ruegeria sp. TM1040]
MKDILAELEERRENARLGGGQKRIDAQHARGKLTARERIELLLDEGSFEEFDMFISHRCTDFGMENNKPA
GDGVITGWGTINGRQVYVFSQDFTVLGGSVSATHAQKICKIQDMAIQNGAPIIGLNDSGGARIQEGVDAL
AGYAEIFQRNIMASGVIPQISVIMGPCAGGAVYSPAMTDFIFMVKDTSYMFVTGPDVVKTVTNEQVTAEE
LGGASTHTKKSSVADGAFENDVEALAEVRRLVDFLPANNREKPPVRPFFDDPARIEDSLDTLIPENANTP
YDMKELITKVADEGDFYEIQEDFAKNIITGFVRLEGQTVGVVANQPMVLAGCLDIDSSRKAARFVRFCDA
FEIPILTFVDVPGFLPGTAQEYGGVIKHGAKLLFAYGEATVPKVTVITRKAYGGAYDVMASKHLRGDFNY
AWPTAEIAVMGAKGATEIIHRADLNDPEKIAAHTADYEDRFANPFVAAERGFIDEVIQPKSTRRRVARAF
ASLRGKKLANPWKKHDNIPL
>gi|99081719|ref|YP_613873.1| Bcr/CflA subfamily drug resistance transporter [Ruegeria sp. TM1040]
MTRSTPPTIWTLILLSGLSALGMNIFQPSLPGMAAYFGVEYRLIALSVPFYLAASTVIQIVVGPISDKMG
RRPVMMVSLLLFLLATLGCIFATTAEVFLAFRMAQAVVATCMVLSRAAVRDMYEGPKAASMIGYVTMGMT
VVPMVGPALGGILDQAFGWHANFWLLFATAAVTLVIFYADFGETATASGKPLIAQFREYPALLRSPRFWG
YSLAAGLSSGSFFAYLGGSPFVGTNVYGLNSAELGIYFSAPAVGYFLGNFLSGRYSERFGINTMVFWGAI
VNIFGVGLSLSITLAGMDTVWTFFGLMCFVGLGNGMAIPNGTTGAISVRPHLAGTAAGLSSAIMIGAGAA
LSATASWLLVPGSNAAPLLEIMFASGCLGLVAILYVMRRERQLGLAA
>gi|99081720|ref|YP_613874.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MGTVITSAACQSEFAVIQMNSAQFAKASHMATQKLYAGAKLREMRNRIGLTQKDFAAKLGVSLPYLNQME
NNNRPVSTTVVLALAQEFGLDVTELSSGDSERLISDMREAMADPVFADDVPPLADLRLTASNAPALARAF
LSLHRAYRQTHERLASLDEALGRADARIQASPWEEVRDFFHYCDNYIDAVDRAAERFSGSGDTRQNAETA
LQEIGVTLTLRDMEGLRAYDPDTKVLALSHRSAPQTRLFQMLLQLALLRYGDLLEATLDFAKFQTDEARS
IAKIGLANYFAGAALMPYTRFLEAAQACRHDLELLSIRFGASIEQVAHRLSTLQRPGAKGIPFFFVRVDQ
AGTITKRHSATRLQFARFGGACPLWNVHRAFETPGRFLRQLAETPDGVRYISLARDVSKPGGSFGAPVRR
YAISLGCEVSHADALVFADGLDVTQASAFEPIGISCRICERQHCHQRSVPPLERRLSVDTNERSVLPYRV
N
>gi|99081721|ref|YP_613875.1| hypothetical protein TM1040_1880 [Ruegeria sp. TM1040]
MSHTPHELAEEFPEKAALMSELKQSDAHFAKLADEYHEVNRAVHRAETNVEPVSEQAENDMRKKRAALKD
EIWGILAKA
>gi|99081722|ref|YP_613876.1| hypothetical protein TM1040_1881 [Ruegeria sp. TM1040]
MRAVSSMTDLYLTEPDFEAEITILTEEQRGRQTPPHNYIRWDFGYAEDNPLEPERNLDAEIYMIWPNFLD
TEGTPIQKGIPLVGTYKAWMHILVREMVCYHRKRISVGLKFNCYEGGQIVARGVVTELRAISLNGN
>gi|99081723|ref|YP_613877.1| choline dehydrogenase [Ruegeria sp. TM1040]
MNADYVIVGAGSAGCAMAYRLSEAGKSVLVIEHGGTDAGPFIQMPGALSYPMNMSMYDWGYKSQPEPHLG
GRELVTPRGKVIGGSSSINGMVYVRGHAGDYNHWAETGATGWSYADVLPYFKRMETWDDRGHGGDPDWRG
TDGPLHVTRGPRDNPLHDAFVKSGQQAGYPVTKDYNGQQQEGFGPMEMTVHKGRRWSAANAYLKPALKRD
NCDLIRALARKVVIEDGRAVGVEVERGGKIEVIRANIEVILAASSLNSPKLLMLSGIGPAAHLAEHGIDV
IADRPGVGQNLQDHLEFYFQFASKKPITLYKYWNLFGKALVGAQWLFTKTGLGASNQFESAAFIRSDKGI
DYPDIQYHFLPIAVRYDGQAAAEGHGFQAHVGPMRSQSRGEVTLASADPNAAPKILFNYMSTEQDWIDFR
KCVRLTREIFAQDAMKPFVKHEIQPGTDLQTDEEIDGFLREHVESAYHPCGTCKMGAVDDPMAVVDPECR
VIGVEGLRVADSSIFPRITNGNLNGPSIMTGEKASDHILGRRLPSSNAEPWFNPNWQTSQR
>gi|99081724|ref|YP_613878.1| betaine aldehyde dehydrogenase [Ruegeria sp. TM1040]
MTHPAQPKASHFINGEYVEDTSGTPIPVIYAATGETIATVYAATPAIVEQALTAAEAAQKEWAKMSGTER
GRVLRRAADIMRERNHELSVLETYDTGKPLQETLVADATSGADALEYFGGLAGSLTGEHIQLGEDWVYTV
REPLGLCVGIGAWNYPTQIACWKGAPALACGNAMVFKPSETTPLCALKVAEILMEAGAPAGLYNVIQGMG
EVGGKLVTDPRVDKVSLTGSVPTGKKVYAAAAEGMKHVTMELGGKSPMIVFEDADIESAISGAINGNFYS
SGQVCSNGTRVFVHKDIKEKFLARLAERTATAKLGDPMDESVNFGPMVSERQMEIVLGYIEKGKSEGARL
ICGGNRADMDGFFVEPTVFADVKDDMVIAREEIFGPVMCVLDFESEDEVIARANDTEFGLSAGVFTKDFT
RAHRVIGQLEAGSCFINSYNDAPVEAPFGGVKASGVGRENSKEAIKHFSQVKSVYVRMGDCEAAF
>gi|99081725|ref|YP_613879.1| hypothetical protein TM1040_1884 [Ruegeria sp. TM1040]
MTYLISAGILLAFALVAFCVIKWWNLEVVGVTPVPLFTFIAILFTSGLDVGLVMFPLAWDFPLYADTATE
PAYGFTNPLALEFGFWGFLIWGFYFLTTFYFCVIEPRVKFFEIPVVKWINNIVIIGTCAFTGALFLIYLP
YYATFMGDGETVIPAFYVITFLVILFAAFSSTDIKYVRILSLGSTGLFALLILGMWAYSGMGLGEFAGTA
SNIGGYFANIHKFVLPLTDYHEFYLFWWFAWSIMIGQFTSRFVGGLKTWQVLAALLIFPSIPLGVWFSVL
YYYHLNEIPTTLVINISMVVVGVIFVINSFDSLIRLYTDNLNLTSKRFGKLPYILGNAVVLFALTVAFQS
QWLQIQWIGAVVIGLYVACLIYIFVNKREEVMAIKASPEENDLDFSKIETVH
>gi|99081726|ref|YP_613880.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MARKRIRDIRNEELIEATIITVHKRGYGTVTMAEIAREAGASAASISYYFGSKEGLMEATMRHLLRKLRK
AMVEGYAQARSPLERLYAVMDANFADSLYSVPQCSIWMQFWANAPYSPSLARLHRINRARVRSHFVAELS
QLVPADQVETARQALQSYMDGVWLQAAQSEQPLDTEAARTAAHRVVDLVTSRALAA
>gi|99081727|ref|YP_613881.1| integral membrane protein-like [Ruegeria sp. TM1040]
MSFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGSCTEVLSSAST
SRFYYLRVETEGWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARIDTRGAAAPDPTAQTRPAADP
DTGSDAARRTFTHHLSAHLTPIKSDVPARHVVQSGFSTKAVFQGCDAETTAYASFCTFIGAGRRYLVYDD
GRTSAALWQEIQQAIRGRRYTLEGLREDLFDTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSF
RVSGAERINAYAGAETSVEYLSLHKPCAEAGDVGPFLFTWDNNSGTSLCYAIARLTDTELALIYLPRGTE
LVYRREG
>gi|99081728|ref|YP_613882.1| hypothetical protein TM1040_1887 [Ruegeria sp. TM1040]
MSDVSQTKAPATEPTSNPMRGVFWMLVTGLNFVAVTALVKYMGPRIPPAESAFLRYLLGLVFLIPMIRSI
KAVEWTSQLHGLFALRGAVHALGVIMWFFAMTRIPLAEVTAMNYLSPVYVTLGAAIFMGEKLAFRRIAAV
GVALLGVVVILRPGFREVSPGHLAMLITGFAFGLSYLLAKTMVGRTNPTVVVAMLSIWVTIGLAPFALAN
WVTPTLFELALLFGVACFATAGHYTMTLAFASAPLTVTQPVTFLQLIWATLLGALAFGESVDVWVVVGGT
MILGAVTFITWREAMVKRRAITPAPHATKS
>gi|99081729|ref|YP_613883.1| ABC transporter related [Ruegeria sp. TM1040]
MSSPSACVLLDGLRWSAADARPLFSDLTLHLQSGRMGLVGRNGSGKTTLLRLIAGDLPPEGGRVQVSGRL
GWMRQEVASAAHLTVADLFGVAPALARLRRIERGVATDTDLAEADWTLPARIEAALQRCGVSVAPEEPLA
PLSGGQRTRVALAAQIFQAPDILLLDEPTNTLDAEGRAMVRRLLRDWRGLALVVSHDRAVLEEMDAIVEL
RAGGAQRYAGPYSQYRAERDMELAAAYQDLHEAEKTRKETMRRAQDATERKARRDSQGRAARASGSQPKV
LLDKAKERAEASKGAGVRLREARRTEAEAALADARERIEVLEPIQMEIPATGLRNQTRLVALQHITAGYG
PHTVLRDFSLEITGPERIAVMGPNGCGKTTLLSLILGHLEPHAGHITRPAEAALLDQHLSLLKSDETLLE
NYLRLNPGVGAQDAHAALARFRFRASEALWQAAALSSGQRLRAGLACTLARPTPPPLLVLDEPTNHLDFE
GLEALEAALLGYDGALIVVSHDSAFLDRIALTRRLVLPSQRSGSGINSLSSPGGS
>gi|99081730|ref|YP_613884.1| Pirin-like [Ruegeria sp. TM1040]
MSWNPTLEPMCPEAGNLDSIETLVVPRARDIGGFEVRRALPAPRRQMVGPFIFFDQMGPAEFLTGAGIDV
RPHPHIGLGTVTYLYQGEFEHRDSLGTHQMIYPGEVNWMVAGNGVTHSERTSEATRKGQSSLFGIQTWIA
LPENKEDMAPVFEHHGKEALPHLLGEGKEVRLILGTAWGETAPVTMHSETFYADVILEAGAKLPMPDNHE
DRGLYITRGAVEIAGQTFGAGQMMVFRPGDAITVTAGPEGARLMALGGETMGGPRHIWWNFVASSKEKIE
EAKQAWARGDFASNPRFQLPPGDDSEFIPLPER
>gi|99081731|ref|YP_613885.1| lysine exporter protein LysE/YggA [Ruegeria sp. TM1040]
MQPLPMTPDMLPILMAGFGLGFSLILAIGAQNAFVLRQGIRGQHVLPIVLTCALSDALLITAGVAGFGTL
TSALPWFEPVMRIGGALFLTGYGLRSLRSAWTGGAALSTEGQGVQTALWPAVLTCLAFTWLNPHVYLDTV
VLLGAISAQYTPAWVFGLGAVTASFVFFFTLGYGARLLAPIFARPRAWQVLDALIGVVMLALAVKLALM
>gi|99081732|ref|YP_613886.1| chromosome replication initiation inhibitor protein [Ruegeria sp. TM1040]
MRYDPLQLAALSAVLDLGSFDAASAALGVTPSAISQRIKALEDRIGTPLVNRSSPCTGTETGLRIAKHAE
DVALLERRLSRDLSLEGAETPARLKLAVNADSLATWFVEAMVAAGDVLFDLVIDDQDHSTDWLRRGVVSA
AVSAEPRPVAGCDVHALGHLRYVATASPAYMARWFPGGVTPETASVAPCMVFNAKDRLQHRWLARHVAPG
LTPPSHALSSTQAFLDAAAAGLGWGMNPETLAEPHLASGALVELIPQSPLETPLYWHVSRIMAPALVEIT
QAVRRAASANLHPPPKASNARAGRGG
>gi|99081733|ref|YP_613887.1| hypothetical protein TM1040_1892 [Ruegeria sp. TM1040]
MLSVPHLPKGSFAHSVWLHLVLPRAAVLAALWAMNQSLQLPIWLVYPAAVLDAGFLVWQLWRYHQAAEAH
IRDTGAMAPSWGGYLLCLLALLSSATLWWDTVLIANMPPPEEQHSEQMRRAREALYQLTLSADGRTVQFE
GEITYGLKARLAQIVENAPDLRVIHLGSPGGHVFEARGAAQVIMGAGLETTVSEACSSACTLLFMAGTRR
HLDPQARLGFHGYGLSEWVHLPGYDIDAAQEKDRVFFLAQGMQPGFAARIFDRPPEEMWYPDHAELRAAG
VLTSP
>gi|161899028|ref|YP_613888.2| hypothetical protein TM1040_1893 [Ruegeria sp. TM1040]
MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNSVPKDVIDRAI
KKATGGDAENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNGGNLGETGSVGFMFERKGEVT
YPASVGDADTVMMAAIEAGAEDVESSEDGHVIFCADTDLNEVSNALEAELGESESTKLIWKPTTTTELDL
EGMQKLMKLVDALEDDDDVQRVTTNFEASDEVMAQL
>gi|99081735|ref|YP_613889.1| hypothetical protein TM1040_1894 [Ruegeria sp. TM1040]
MRRAQNLWNALALVCRGAPLDPRHAAEAAFGRGAEKDRIADDTLRERGSGPCTMRPTGLEPWTQQCRGPS
MGPEIGMRAEEKQPALESLRSQRLYERQFLKSKHRMHHGRPFQMGKHPAP
>gi|99081736|ref|YP_613890.1| TrkA-C [Ruegeria sp. TM1040]
MTLDQTLLFGLFATVFGLLLWGRFRYDLVAFGALMVAVVLGLVKAEDAFAGFGHPATLVVALVLVVSAGL
VKSGAVHLITRTLVDQSRALGAHIALMGSVGAVLSAFMNNVAALALLMPVDIQTARKAGRTPGQSLMPLS
FATILGGMATLIGTPPNIIIASIRHDTLGEPFKMFDFAPVGLAAAAAGLAFVALVGWRLIPDRSGAAGAT
ESQLAPYIAELTVPEDSDLIGQRLGSLDPEAEKADVAILGLIRGGQRRYGRAAGALLQAGDTIVLEATPD
ALDEFRATLKLDFSDAAREEKLKAAGEGLELIEVVVPEYSRIAGRSAQGVGLAWRQSAVLLGIARQGERL
TKHLRQTEVAPGDILLILCPRDRGAEVAEWLGCLPLAARGLSVTANDKTWWAIGLFAAAVLAASVGLVYL
PVALGLVAIGYVLLKILPVAEIYDHVEWPVVVLLGSMIPLGQALETSGGTELLAHGLVELTTGLPAWAIL
TVLMVVTMTLSDVLNNTATAIVAAPVGISMAQALNVSPDPFLMAVAVAASAAFLTPIGHKNNTLVLGPGG
YKFGDYWRMGLPLEILVIAVSIPAILFFWPL
>gi|99081737|ref|YP_613891.1| putative FAD-binding dehydrogenase [Ruegeria sp. TM1040]
MAAAQRDNHADVIVIGAGLAGLVAANELADRGKRVILLEQEPAHFIGGQAHWSLGGLFMVDTPEQRRMGI
RDSLDLAQRDWAGSAQFDRPEDQSPRQWAKAYLEFAAGDMRAWLHDLGLRWFPVVGWAERGDGRAEGHGN
SVPRFHITWGTGPGVVAPFAQRVHAHVATGRIDARFRHQVSHIIQQGGHIKGVSGEVLADDQGPIGAQTN
RHEVGEFEVYAPSLIVASGGIGGNLEMVRENWPTERLGPAPSRMVSGVPAHVDGRMLKVAQAAGGHIING
DRMWHYCEGLRNWDPIWPNHGIRILPGPSSLWFDAHGTRLPDPALPGFDTLGTLKAILASGQDYSWFILS
QKIIQKEFALSGSEQNPDLTSGTWAEVLRARIFSGGKAPVPVEAFKKHGADFVVAETLSDLVRGMNEIAD
VPLDEAHIRAQIEARDAQVDNPFAKDRQIQAIHAARNYRGDRLIRTAKPHRLLDRANGPLIAVRLSILTR
KTLGGLHTTLESQMIGADGAPLPGLFAVGEAAGFGGGGYHGYNALEGTFLGGCLFSGRQAGRSDQIA
>gi|99081738|ref|YP_613892.1| hypothetical protein TM1040_1897 [Ruegeria sp. TM1040]
MTPPSPDTIYFYAQTDPYAEFSNFAPYGVCFEDIWWPTVEHYFQAMKFHDAAYRTRIRRCQKPKDAKALG
MTRKIPLRADWEEVKDDIMYAAVLCKFRTHGAPRQLLLGTGDAPLVENAPMDAYWGCGPDGLGLNKLGRI
LMRVRGELAEDAAALNR
>gi|99081739|ref|YP_613893.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MMTTRRAFIAAVLVAASAIVMGAQTRATEPATPPLTDTQWTLSEIEGKAPLEGRDLDLIFFEDGRFGTSA
GCNRFMGEVEIEGDEITFPDKIAGTMMACPEGLAEQEEKLLSLLSEVTHYQIEPDALILMDSDGQALLRY
SREVEEEGLVETSG
>gi|99081740|ref|YP_613894.1| TrkA-C [Ruegeria sp. TM1040]
MFLFQSGDTTSAIIALLIVLAMFVAFLRETYPTEVVAICGVSLMLITGVLPYAEALPVLANPAPWTIAAM
FLIMGALVRTGALDAFTSVARKKAEVSPKMAIALLMGFVVIASAFVSNTPVVVVMIPVFIQISRTLNVSP
SKMLIPLSYAAVLGGTLTLIGTSTNLLVDGVARAQGLAPFSIFEVTPLGIVVVVWGLIYLRFIAPRLLPE
RDSMAMMLSDRSKMKFFTEAVIPPDSNLIGREVTGVQLFKRPGVRLIDVIRGDDSLRRNLQGVELQVGDR
VVLRTQMTELLSLQRNKELKRVDQVSAVETKTVEVLITPGCRMVGRSLGAMRLRRRYGVYVLAVHRRNQN
IGVQLDDLVVRVGDTLLLEGAPGDIQRLAAETDMADVSQPTQRAYRRSHAPVAVAAMVGIVIAAAFGLAP
ILMLSILAVALVLATRCIDADEAFSFVDGRLLALIFSMLAIGAALESSGAVELIVNAISPALVDLPPFFL
VWAVYLLTSVLTELVSNNAVAVVVTPIAVGLAQAMGLDPRPLVIAVMIAASASFATPIGYQTNMLVYGPG
GYKFSDFLRVGIPLNLSMGLLASAVIPLLWPL
>gi|99081741|ref|YP_613895.1| beta-lactamase [Ruegeria sp. TM1040]
MTPDRPVFTHRLSASGSDSPRADAGEIFPYWSFTKTVIAICALRMVQDGRLDLDAPLAGFDFSLRHLLDH
TAGLPDYFTLPAYGAAVAQNEEPWSAEALRAATMAQGRLFAPGTGWSYSNLGFMVARDLLEEVAGQSFSD
LLQQLICAPLELRSITLAQTRRDFERVHWAAAKRYHPGWVYHGCLTGTAADAARLLQGLFEGTLLDAEML
REMRKSHPLGGVIEGRPWTECGYALGLMSGRAGEAGRMIGHSGAGPFSVNAVYHFPDLSPPVTVASFTDG
TLEGVAEHAAVAAALSA
>gi|99081742|ref|YP_613896.1| hypothetical protein TM1040_1901 [Ruegeria sp. TM1040]
MRILFLGDVMGRAGRAAITETLPRLRDEWRLDFVVVNGENASNGMGLSGEHAKILFEAGADCVTLGDHAF
DQKDMLQYIEQDSRIVRPLNFAKGAPGRGHRLFTARGGQKVLVLQALGQVFMKRAFDDPFGAVEGVLKSH
PRGGLAQAIIVDMHCEATSEKMAMGHFCNGKASLVVGTHTHVPTGDAQILEGGTAYLTDAGMCGDYNSVI
GMDKAEPMRRFLTGMPKSRFTPATGAATLSGVYVETDDRTGAAKRIEMVRQGGLLQQAAP
>gi|99081743|ref|YP_613897.1| hypothetical protein TM1040_1902 [Ruegeria sp. TM1040]
MSTPVLNLDPDTLLMSSKDARAAAAPYAAEYQGRGPFNYGGYDNFLNPEILERVREELKQLPEAANSYDR
PQERLKTSYVPERLPMYTRQLFYALNSRPMLAFIEELTGIKGLIPDPYFAGGGVHVVANGGHLDIHADFN
HHAGLNLERRVNLLIYLNKDWREEYGGSFEVWDENMAGKLASYVPLFNRMCMFSTSSESWHGNPEPVNHP
DGEPRMSIALYYYTATWDSTRKSHTTLFKPRPGTKDQRDRQVARRELLQDLLPPVLHRKLAWRLEKLGF
>gi|99081744|ref|YP_613898.1| 5-formyltetrahydrofolate cyclo-ligase [Ruegeria sp. TM1040]
MSDTDRDAGDLTAIKAAARKAAFVRRKGAFETQRPGAAGHLAEVLAGYRGVPLAGYMPIRTEIDPLGVMA
EAAAHGPVGVPVIQGAGLPLKFSRWQPEGALRDGPFGAKVPEVDDYFDPEILIVPLVAFDAAGNRLGYGG
GFYDRTLDRLRAQRATLAIGFAFDAQEAEGLPLEPTDQPLDMIVTESRVLDFKRP
>gi|99081745|ref|YP_613899.1| magnesium transporter [Ruegeria sp. TM1040]
MTTGENTPEAETMGEDAYELDRKRVAQILFALDRDDRDALVELMDPLHPADIADLLEQINAYDRGRLIRL
YDKEFDGDILSELDESIREEVIAALNPEVLADAVRDLDSDDVVDLLEDLEEPQQEAILDALEDSDRVAIE
QSLSYPENSAGRLMQREVVTAPEHWTVGQAIDHMREAEELPEQFYHVVIVDPRMHPIGQVTLGRLMSSRR
TKPLIEILEETFQVIPVGQDEEDVAYAFNQYHLISAPVVDEGGRLVGAITIDDAMAVLDEEHEEDILRLA
GVGEGSLSDRVSETTKQRFPWLAVNLVTAIFASLVIAQFEATIAQFVALAVLMPIVASMGGNAGTQSLTV
AVRALATRDLTGSNVWRVIRREVLVGLINGGIFAVVMGVIGVVWFGTPMLGVVIAAAMVINLVVAGLAGT
VIPVILDRIGIDPALASGAFVTTVTDVVGFFAFLGLAGAVLI
>gi|99081746|ref|YP_613900.1| guanine deaminase [Ruegeria sp. TM1040]
MKQDLILLGRVLSFCASPFAPDGPEAAVEEHEAIALRAGKIVALGSRAALSKVLPEAEIVDHGQKLIVPG
FVDAHVHYPQTAIIASWGKRLIDWLNTYTFPEEMRFGNPAYAAEIAARYLDLTTACGTTTVASYCTIHPE
SVDALFEAAQARGQRVVAGKTCMDRNAPEGLRDTPQSAYDDSAALIQRWHGRERLIYAITPRFSPTSTPE
QLEALGALWTAHPTCLMQTHLSEQLDEIEWVRTLFPEARDYLDTYERYGLLREGALFGHAIHLEPRERAR
LLEARASLIHCPTSNTFIGSGLFDMNGLMREGHRIGLATDTGGGSSFSMLRTMAAAYEVAQLRGTPLHAA
QLLWLATLGSATALGLQDKVGNLAVGREADLVVLDLASTPAIAQRATRAETLWEALFPTLMMGDDRAIAE
VRINGQKAV
>gi|99081747|ref|YP_613901.1| hydroxydechloroatrazine ethylaminohydrolase [Ruegeria sp. TM1040]
MTDFLLKNAQTVLTMDDDRRVLHAVDIRVRAGVIAEIGPTLGGAETKVDVSGAVVTPGLVNTHHHLYQNL
TRAVPGGQDALLFGWLQTLYPIWARMGPEHLEVSTQLGLAELALSGCSLTSDHLYLFPNGGRLEDTIHAA
AEVGLRFHPTRGAMSIGESDGGLPPDSLVEREADILADMIRLVDAYHDPSDGAMCRVGLAPCSPFSVSRE
LMRDTALLARDKGVMLHTHLAENDEDIAYSEAQFGCRPGQYAEDLGWTGDDVWHAHCVKLDVEEIDLFAK
TRTGVAHCPCSNCRLGSGIAPVRQMRDAGVKVGLGVDGSASNDMASLWDEARQALLLQRVANGADAMSAY
EALEIATRGGADVLGRPDCGRIAVGKRADIAVWDVSGLASSGSWDPAALVLAGPRQVRDLFVEGRQVVAS
GRLTTVDTAAVIRRHGALAQALANGD
>gi|99081748|ref|YP_613902.1| histidinol-phosphate phosphatase, putative, inositol monophosphatase [Ruegeria sp. TM1040]
MTHPSTLSDLDVARRLAEAARAAILPHFRNSATAADNKLEAGFDPVTVADRAAEEAMRAVLRKLRPDDGV
LGEEFAATTGTSGRTWVLDPIDGTRGFISGTPTWGVLIALSDAKGPMLGIIDQPYIGERFEGCRGHAQVV
GPHGTRPLLTRKTEALSEAILFTTFPEVGTEAERTGFEQVAQHVKLTRYGMDCYAYALLAAGTVDLVIEA
GLNAYDIQAPIAVIEAAGGLVTNWQGGAAHEGGRALAASNPTIHAAALELLREA
>gi|99081749|ref|YP_613903.1| hypothetical protein TM1040_1908 [Ruegeria sp. TM1040]
MTAICAVFPAYYTEVAFGRPFALRNCASHGPLRSRRKGFHAKSARPQIPDQLAGAQAAQPSPVGRFGLKA
TAWRGTRSGPATSIIGAFYDTSFDAV
>gi|99081750|ref|YP_613904.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDALDVNISFFFEG
LQDETKSVPDKARVPADLMGDKEALDLVRSYYAIPENQRRRLFELARVLSDVA
>gi|99081751|ref|YP_613905.1| zinc-binding alcohol dehydrogenase [Ruegeria sp. TM1040]
MLSFRIVKHGTNGTLCDTPFAPPGPGQIEIEIHACALNFADLLMIKGNYQDTPSLPFTPGLECAGRITAV
GPQISNFRIGDRVAVFGGQGGLAEIGVFDAARAVPIPDTVSYEDAAAALIAHGTSLLALEHLARLQPGER
LLVTGAAGGVGLTAVEIGKLMGAEVIAQARGAEKLAVAKAAGADHLIDASDDLRQRVKDLGGADVVYDAV
GGDTWEAAFRATNPGGRLLPIGFAGGAVPQIPANHLLVKNLTVFGFYIGGLIKLRPELGQQTFETLMRWL
AEGRITPHISHRLPLSETDAGLELIRSRAATGKVIIQPQAGRVR
>gi|99081752|ref|YP_613906.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MRNLDITTLRSFVAVADTGGVTRAASFLHLTQSAVSMQLKRLEEMLGVELLDRSGRNIGLTSAGEQLLGF
ARKMLSLNDEIITRLTDQAFEGEVTLGVPHDVVHPVIPMVMQRFNVQFPRVKVNLCTSNTRDLKMDFAQG
RFDLIVTTETTASEGGEVIHQMPLRWIGALGGQTWRQRPLRIGFCRNCIFRGLATAALDDAGIPWEMAVD
SESDRTVEATVSADLAVGVLLEGTQPAHQQVIDHGGSLPQLPVQHINLYGAERSRAQYVDHLASLIRQGF
AGLSQPGLRAVGTEMVSAPVQLGVV
>gi|99081753|ref|YP_613907.1| hypothetical protein TM1040_1912 [Ruegeria sp. TM1040]
MANCIEHSRPIPLRRPSLLSTITQMIALRRQRQHLDRLSDEQLKDIGVTRDQAEAEARRKAWDAPNFWLS
>gi|99081754|ref|YP_613908.1| hypothetical protein TM1040_1913 [Ruegeria sp. TM1040]
MAQFDSIRSAAGARSAEIDAGLRAHMNKVYGTMSVGTLITFLAAWAIAGLSVTSDPANAVAQLSSDSYLT
NFGYAIYASPLKWVIMFAPLAFVFFGFGAAVNRLSAAGVQVVFYAFAALMGLSISSIFVTFTGESIAQVF
LVTSIAFAGLSLVGYTTKKDLSGMGSFLIMGLIGLIVASVVNIFLASSAMAFAISVIGVLIFAGLTAYDT
QRIKNDYLQMAHAGDQEWLGKAAIMGALSLYLDFINMFMMLLQLLGNRE
>gi|99081755|ref|YP_613909.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MKIEPIGPDRAVRLVPLLEDLHAVHVAHHRDRYTPNPDPAHLSVWLSEWLAEPNVHALAAISPQEALMGY
LIYDIEKRPALPVRPAETRAMLHHIAVAAPLRGIGVGKALMTQMKEDALAKGADVIGVTYAPFNAASAAL
MRHFGLEPVMTMAEWRRPSDEASQEPSQPTSETSPQEAI
>gi|99081756|ref|YP_613910.1| 50S ribosomal protein L33 [Ruegeria sp. TM1040]
MAKPTTIKIRLNSTAGTGHFYVTKKNARTMTEKMTIRKYDPVARKHVEYKEGKIK
>gi|99081757|ref|YP_613911.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Ruegeria sp. TM1040]
MVSADPIWHPSPNFGARRDGLQPHLIVLHYTAMESAEAALQRLCDPAFEVSAHYLIGGDGRLWQMVAEDH
RAWHAGQGEWAGLSDINSRSIGIELDNRGDHPFSEPQMCVLETLMAQIMTRWTIPATGVIGHSDMAPGRK
WDPGPRFDWQRLATLGLARPNGQPLAAPAATPEALRKAAQACGFTAEVDDATLLQAVRLRYRPWARGPLC
GEDIAPLLS
>gi|99081758|ref|YP_613912.1| hypothetical protein TM1040_1917 [Ruegeria sp. TM1040]
MRVPAILVAVSAIALVACSPQVPDSAAGVGDATSPFNAPPEVEAGRTLNGDPLVPATQISDESTATNTNW
QQPRPSGGAAASASDDIARETAAALSAAGQNSGRAPLEASPSNPAPALVGNPNLSDENSFEAVSARQTIE
SDAERIARQRAQYQVVTPTAVPDRPEDLAPNIVRYALSTSNPRGQRIYSRTGINLQARSARNCAEYPSAD
LAQTAFLEMGGPKRDRKALDPDGDGYACGWDPAPFRAAVRAAGN
>gi|99081759|ref|YP_613913.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Ruegeria sp. TM1040]
MSDLNKLGLAEARDLLRKGDTTSVELTEACLKAIDGADALNAFVHKTPDVALDRAKAADARIAEGDAPAM
CGLPIGMKDLFCTKGVDSQAASNILKGFKPEYESTVSQKLQDAGAVMLGKLNMDEFAMGSSNETSAYGNA
ISPWRREGDETPLTPGGSSGGSAAAVAADLCLAATGTDTGGSIRQPAAFTGTVGIKPTYGRCSRWGIVAF
ASSLDQAGPMTKNVRDAAIMLEAMCGHDAKDSTSVDLAVPNFEAMLTGDIKGKKIGIPREYRMDGMPAEI
AKLWDEGAAMLKAAGAEIVDISLPHTKYALPAYYVIAPAEASSNLARYDGVRYGHRATLAQGDGITEMYE
KTRAEGFGHEVQRRVMVGTYVLSAGFYDAYYNRARKVRTLIKKDFEDVFAAGVDAILTPATPSAAFGLGE
MNDEDPVKMYLNDVFTVTVNLAGLPGISVPTGVDTQGLPLGLQLIGRPWDEGDLLNTAYALEQAAGFVAK
PAQWW
>gi|99081760|ref|YP_613914.1| aspartyl/glutamyl-tRNA amidotransferase subunit C [Ruegeria sp. TM1040]
MSIDQSTAAKVAKLARIKVEEDALPALAEEFNTILGFIEQLNEVDVEGVEPMTSVTPQRLKRREDVVTDG
NQQDKVLANAPDAREGFFAVPKVVE
>gi|99081761|ref|YP_613915.1| beta-lactamase-like [Ruegeria sp. TM1040]
MKLIWLGHGGFRLETGETTLLIDPWLTGNPMLEDSQHDAATQGATHILLTHAHFDHVADVLELAKHLSVP
IVGQYDLMGYWGETEGVQTVGFNKGGTVTVGDTRVSMVPASHSNTFSTRDGLRTAGSEVGYMIRAEGKTL
YVSGDTDIMADMDWMGDYYKPEIGILSAGGHFTMDMKAAAYAAQRYFAFKTVIPCHYRTFPLLEQSAQDL
IDGLPGVNVIEPQIMKDIEL
>gi|99081762|ref|YP_613916.1| peptidase M24 [Ruegeria sp. TM1040]
MPANDFTTTEYARRLEKTRRAMAAKGLKTLVICDPSNMAWLTGYDGWSFYVPQAVILHEDGMPMWWGRTQ
DKPGAALTTWLEADHLFDWPEEHVQHPDHHPFDSLVDLLREFGWTEAIGVEMDNYYYSARSHEILETAFG
RDAFADATGLVNWQRAVKSEQELQLMQAAGKLSAHMHGVLRAEFNEGIAKNALVARVQAAGIEGLPLLAG
DYPAISPIAPSGIEASASHITWNDRPLAPGEATYFEISGCVRRYHCPISRTLFLGSPPEDIRRGENAILQ
AIEDTFAVAKPGVTCEEVAACVYESFGRAGYIKGNRTGYPVGLSYPPDWGERTMSLRPGDTTKLEENMTF
HLMPGLWTPDWGMAITETFVVTPNGGEPLADVPREIVVK
>gi|99081763|ref|YP_613917.1| DNA-3-methyladenine glycosylase I [Ruegeria sp. TM1040]
MSRVVTGGDGRTRCAWSASAPEFDAYHDTEWGFPVGDDRRLFEKICLESFQSGLSWRTILAKRENFRAAF
DGFDYHAMAAYGPEKVAALLQDAGIIRHRGKIEAVINNAARAVEMEQSEGALAAFFWRYEVETPPEPQTV
STCPESVALSKELKTRGWKFVGPTTCFAFMQAMGLVNDHAEGCYCRPIAAAARQGFAKPV
>gi|99081764|ref|YP_613918.1| YCII-related [Ruegeria sp. TM1040]
MFVICLKLTADRERISGVLEAHKAWLAQGFEDGVFLLAGALDDGPGGLILAVGEDRAALEERLATDPFVR
DGLVAVDITAFTPSQADPRLSFLKVAA
>gi|99081765|ref|YP_613919.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MAQTRERIVAQADELFYTRGFEATSLADIAAPLGLSRGNFYYHFKTKDEILEAVIDLRLERTALMLRAWE
TESDTPLDRIICFIRILIQNRSKIMAWGCPVGTLVSELSKLEHVAHTHAAELFRLFIDWLAEEFRRAGRT
QDAEALATHLMGRSQGVAALAQAFADPALIEAEVQQMTDWARQQIAAPA
>gi|99081766|ref|YP_613920.1| hypothetical protein TM1040_1925 [Ruegeria sp. TM1040]
MRPPPEALLRRFDLRDPDWVAGTRHAQVWKVRLRSGDWGALKHYPAGHLSNEATGLLFLERANGERSRDA
APARSCTGRS
>gi|99081767|ref|YP_613921.1| CMP/dCMP deaminase, zinc-binding [Ruegeria sp. TM1040]
MAEALDEARAAAARGEVPVGAVLVSPEGKVVARAGNRTRELNDPTAHAEVLAIRAACAALGSERLLGHDL
YVTLEPCAMCAAAIAAARIARVYYGASDPKSGGVAHGACVFDHPQSHHAPEVYEGFSAAQSEALLRAFFA
LRRK
>gi|99081768|ref|YP_613922.1| pseudouridine synthase, Rsu [Ruegeria sp. TM1040]
MLSPLSRIGYGSAMSKKTPSKPPARRAANAARPKATPSATPRAHKGLQAGAPADARPSQDGDRIAKVLSR
AGVASRREAERMIAEGRVAVNGKVIDSPALNVTNLDRIVVDGNPLPEAEAPRLWLYYKPNGLVTTTSDEK
GRKTIFDALPEDLPRVMTVGRLDLNSEGLLLLTNDGGVKRQLELPSTGWLRRYRVRINGRPQDHEFDVLR
KGVVIDGERFQPMTISLDRQQGANAWLTIGLREGKNREIRRAMEEVGYPVNRLLRISYGPFQLGTLKEGE
VEELRPRVVRDQLGLAAPEGDGEAKKKPTRPGRGPRNPGAKTAGKGIGAPNARPTGKGAVKAPEGRVFSG
KTFSGKTTGKTAGKPAAHKGQGGKPSGPKSFGTKQGGGSGARGSGKPNGASGGASGGKFSPGGRRFGKKP
QD
>gi|99081769|ref|YP_613923.1| hypothetical protein TM1040_1928 [Ruegeria sp. TM1040]
MAQRFGGKYSPSGQDGARPDGRPTSSSRMTATARVNPVGLRANLMFVPAAVMMLFSLASGAAGLVLGLIS
AGLWAASAVMLREGLKAEAAYDDRKVARRPALPRKILAASLCGLGGAVGAWSSEPGVITAALYGVACVGL
HLAAFGLDPLSDKGVEGIDDFQSARVARVVDEAETHLAAMKDAVLRAKDRSVELRVDQFQAVARDLCRTV
EEDPRDLTAARKYLTVYLLGARDATIKFADIFARSGSTEARADYLALLDDLEQNFAARNEKLLLEDRGDL
NIEIDVLRARLEREGVQLDRPS
>gi|99081770|ref|YP_613924.1| toxic anion resistance [Ruegeria sp. TM1040]
MSETIQQKAVEAETLVKEVTEVSLPDPKGELATLEAADPETTTAIRRRIDEIDMGDTNSIISFGSAAQGE
LQQISQAMLTDVRNKDVGPAGDSLREIVTTIRGFSVSELDVRRKPTFWERLLGRAAPFAKFTARYESVQG
QIDKITDSLLAHEHTLLKDIKSLDVLYEKTLNFYDELALYIAAGEAKLAELDSTEIPALEAAVEAAAEND
QVIKAQELRDLRAARDDLERRVHDLKLTRQVTMQSLPSIRLVQENDKSLVTKINSTLVNTVPLWETQLAQ
AVTIQRSAEAANAVRDANNLTNELLTANAANLRESNKVIREEMERGVFDIEAVKQANADLIGTIEESLQI
ADEGKRKRAEAEADLKKMEAELRDTLAAAKARKDGVGDTAATSVPK
>gi|99081771|ref|YP_613925.1| putative lipoprotein [Ruegeria sp. TM1040]
MNPDTDTVLRPRPLGAVLAMGAALLLGGCLALAPGPKDTPRPTPRPVAPVYTPSVESQTLAKYYADLEQD
LLTRGLLRTDGGGPETPYDAEDLAERFETLAFYDEYASATDGGAGGMGRWERPVQLVPVFGPSVTPAQEA
RDRASLTAYAARLARITGHPITVGTSGNFTVLFAGIDDADFVETKVRRLLPNLSDRDVALFATPPRKFYC
LVFAGGPQSDPLNYTRGVALIRAEQPNLMRESCIHEEIAQGLGLRNDSPKARPSIFNDDDEFARLTSHDE
KLLQMLYDRRLRVGMSAEEARPAIERMAREVMGELSN
>gi|99081772|ref|YP_613926.1| glutathione S-transferase-like [Ruegeria sp. TM1040]
MTRPLGSRHSALQKRLAETLMIDLYTWNTPNGRKVSILLEELNVPYTAHAIDIATGAQMAPAFLAISPNN
KIPAIRDQETGVTLMESGAILIYLAEKHGQFLPPEQRIEIYEWLMWQMAGFGPMLGQAHHFLKYNRGASD
YAEERYGAEARRLYGVLDRRLEGRDYIVNDYSIADMACWPWVSRYEWQDIDLRDFPNVRRWYQAIAARPA
VQRGYHLPDHVNEIPQG
>gi|99081773|ref|YP_613927.1| acetolactate synthase, large subunit [Ruegeria sp. TM1040]
MSSDTAQPASASRRSGGRVLADQLQILGADTIYCVPGESYLELLDGLHAHQESINVVTCRHESGASNMAD
AYGKLTGKPGICAVTRGPGATNASNGVHTAFQDSTPMILLIGQVGREMVDREAFQEIDYRRMFGQMAKWV
AQIDDAARIPEYMARAWKTALSGRPGPVVLALPEDMLTDEVTVADLRVTPPARPAPAAHDIEALSAMIAR
AKKPMLMVGGPSWSEACADKALAFAERLGLPVTTSFRSQDYVNNGHDNYVGPVGIAPIPNLRKRLREEVD
LLITVGPRLGEMTTQGYELIDIPHPQMTFVHVHPGAEELGQVYQPDLAIQSDPELFFDAAEAITLPSQPE
GWADWVQQQRADYLAFQTPTEVPGDVNMGHVVRHMSETLPEDTIYTNGAGNYTVWLHRFHQHRAYRTQLA
PTSGSMGYGVPAAVAAKLAHPDRTVVAMAGDGCFMMTSQELATAAQHGADVIYVVVNNGMYGTIRMHQER
HHPGKVMATKLVNPDFVAYAASFGIAGERVLRTEDFPAALERARTTKGGYMIEIVVDPEALTPNQSLSAV
RAEGQGKANA
>gi|99081774|ref|YP_613928.1| phosphoenolpyruvate-protein phosphotransferase PtsP [Ruegeria sp. TM1040]
MVENTESESRKLLGRLREAMAGDDAGQARLDKITQLIADSMGTEVCSIYLFRDEDTLELCATEGLNRESV
HQTRMRVGEGLVGRVARTGKVINTPDAPSARGFRYMPETGEERFSSFLGIPIQRLGEMMGVLVVQSKESR
EYSADAVYALEVVAMVIAEMTELGAFVGEGSAMSPLHQQSVLLKGIAAQEGAAEGNIWLHEPRVVVTNPI
ADDPHRELERLQEAVEELRVGVDKMLQVSSNGDKEQAQVLETYRMFANSKGWMRRMEEDIARGLSAEAAV
EKEQSLARGRMAQVQDAYLRERLSDLDDLSNRLLRILTGQGKDTGAELPENPILVARNIGPAELLEYGRS
LKGIILEEGSVGSHAAIVARALAIPLVVRVARITTEGLNGDHVLVDGDNAVVHLRPDDPVVSAFRDKIAM
QAKAQERYSSIREKPAITVDGKRINLMMNAGLMADLPSLENSGAEGVGLFRTELQFLVRNQMPKRSELKG
LYQRVLEAAGGKRVVFRTLDIGSDKVLPYMKPTDEPNPALGWRAIRVGLDKPGVMRMQLQALIRAANGGP
LTVMFPFVAQFEEYRLAREEVNKTIERERRLGHVLPSTLEIGAMLETPSLGFAPLKFFEEVDFLSIGGND
LKQFFFAADRENERVRRRYDTLNVSFLSFIERIVERCDISGTPLSFCGEDAGRPIEAVCLAAMGIRTLSM
RPASIGPVKSLLMRVDLGELRKIISDARHRGDQTVRPAVMQYLREL
>gi|99081775|ref|YP_613929.1| aspartate kinase [Ruegeria sp. TM1040]
MPLLVMKFGGTSVANLDRIRRAAKRVGVEVAKGYDVIVIVSAMSGKTNELVGWVGETSPLYDAREYDAVV
SSGENVTAGLMALTLQEMDVPARSWQGWQVPLKTNSAHSQARIEEIGTENINQKFGEGMKVAVVAGFQGI
SPEGRITTLGRGGSDTTAVAFAAAFGAERCDIYTDVDGVYTTDPRICEKARKLDKIAFEEMLELASLGAK
VLQTRSVELAMRYKVKLRVLSSFEEQSDEAGTLVCDEEEIMESNVVNGVAYSRDEAKLTCLSVADRPGIA
ATIFGCLSDAGVNVDMIVQNISEDGRTDMTFSCPTDQVQRAEMALNAYKEKGELNFAELVADTGVAKISV
VGIGMRSQSGVAAKMFKVLSDEGINIKVITTSEIKISVLVDRKYMELAVQALHDAFELDKAS
>gi|99081776|ref|YP_613930.1| cation transporter [Ruegeria sp. TM1040]
MLDLRPVGYVIGLLVVILGGTMVFPLLLDLYDGKGEWPVFLESALFCFLVGGVLALTCANGVGRGLSIRQ
TFLLTTLVWVVLPIFGALPLMLGATELSFTDAFFEAMSGLTTTGSTVISGLDDLPRGLLLWRGILQWLGG
IGIIVVAMVFLPELRVGGMQIFKSEAFDTMGKILPRAQEIAKQISVIYLVLTLVCALVYTVLGMGLFDAV
VHAMTTMSTGGFSNYDASFGTFSGPAEYAAAIFMVVAALPFVRYVQMVNGKTLPLFQDSQVRAFMATILL
LVAITAGVLVTIFPHHPEQAVREALFNIISIMSGTGYASVDYMAWGPFLIMIFFFIGLIGGCAGSTACSV
KIFRYQLLFASIRVQVQRIRSPNGVFVPRYEGRPVTPDVLSSVISFFMFFVITLGIVAWALALTGLDFIT
AISGAATAVANIGPGLGDIIGPAGNFAPLNDTAKWILAIAMLIGRLELMAVYAILTVRFWRS
>gi|99081777|ref|YP_613931.1| hypothetical protein TM1040_1936 [Ruegeria sp. TM1040]
MIRFEGFKDIPTTPQAWAGYALGRQLRMMRALATLAADAPQRQLEMTQALLKAQQEWISGLPNATAAVGE
DAVAPARKPPEPRKPAARKPAARKVSTPTASTKTTSRKTTASKATSTKASSAKTAAPQTPAPKTPGPKTP
AQKAPARKTTARKAAAAKAQPASASGQPTAVAAPASPAESSARKTPPATKAKADTPAAAEQKTAPEVKDV
SRPEGAAAASGTTQAPARKRPRAPSAPPAMPATAAHNTEDTKSES
>gi|99081778|ref|YP_613932.1| putative GTP cyclohydrolase [Ruegeria sp. TM1040]
MNIHSRDVNETPDRSDAEQALAVLRRWAGEASETEVAQLDPAIARLLPGQELQNYPDLKRQYPDDFDANE
SYRATLPDLQNGPSSLIRGAKEQIQHVGISNFRLPIRFHTRDNGDLTLETSVTGTVSLDAEKKGINMSRI
MRSFYKHAEKVFSFDVMEAALEDYLSDLESGDARLQMRFSFPVKVQSLRSGLSGYQYYDVALELVQMAGQ
RHRIVHLDYVYSSTCPCSLELSEHARQARGQLATPHSQRSVARISVQMEQDGGCLWFEDLIDHCRRAVPT
ETQVMVKREDEQAFAELNAANPIFVEDAARLFCEALQSDARVGDFRVVASHQESLHSHDAVSVLTQGTMF
AAPSLDPQLFSTLIHRG
>gi|99081779|ref|YP_613933.1| O-succinylhomoserine sulfhydrylase [Ruegeria sp. TM1040]
MTESWNKRTKLVHGGTRRSQYNEVSEAIFLTQGFVYDSAEQAEARFIETGADEFIYARYGNPTVAMFEER
IALLEGAEDAFATASGMAAVNGALTSILKAGDHVVSAKALFGSCLYILENILTRYGVEVTFVDGTDLDQW
RAAVRPDTKAVFFESMSNPTLEVIDIEGVAEIAHAVGATVVVDNVFSTPVFSNAIAQGADVVVYSATKHI
DGQGRALGGVVLGTKDYIRGTLEPYMKHTGGSLSPFHAWMFVKGLETIDLRVNAQAASALKIAEAFESHP
VLARTIYPGLKTHAQNALVQRQLGGKGGTVLSLDLKGGKEAAFAFLNALSIPVISNNLGDAKSIATHPAT
TTHQRLSEAQRAELGITDGLVRFSVGLEDADDLIADLSQALQTLA
>gi|99081780|ref|YP_613934.1| hypothetical protein TM1040_1939 [Ruegeria sp. TM1040]
MAVIRINAVGDTPVVHARPGPLEEEIARLGPLEGPVIVMIHGYSYKPGLPAHCPHRHILSLDPHHMPWLA
PSWPRQLGFGMGRGDEGLAVAFGWNSRGRLAAAQARAIDAGRALARLVEVLHRQAPARPIHLIGHSLGSE
VVLRALKDLPVGAVERVISLSGASYQSVATSALTTPAGRAVEFFNITSRENDTFDFLFETLTRRPNRNDR
AISKGISAPNAVTLQIDCLETLEQLSRMGHPLGLPERRVCHRSTYLRPGALRLYRQLMRHPEQIPLTRIQ
SSVPTAPEPRWSRLLRLRPQPGAVPIWQRIELG
>gi|99081781|ref|YP_613935.1| intracellular septation protein A [Ruegeria sp. TM1040]
MSEQTSDPSPAARKISPLVKNLLEFGPVVLFFVAYLRLKDQVFEIGGTSYEGFIVVTAGFVPLMILSTLI
LWRLTGKLSRMQVMTLVLIVVFGGLSVWFNDERFFKMKPTMIYLLFGGMLGVGLLRGQSYLRVVMEEMMP
LQDEGWMILTRRLCAFFFGLAVANEVIWRMMSTETWVYFKTFGLTAAMFLFFMTQARLFQIYGLEEQGEA
E
>gi|99081782|ref|YP_613936.1| hypothetical protein TM1040_1941 [Ruegeria sp. TM1040]
MLSEWLISLEGTEAGHQVALILAVSAAFLHAVFGALQKGRHDPWLSRGAIDASYGLMAAPFALFVVPWPE
PHMWLIFLGVWAIHVVYKILQAMAYTKGAYTVVYPVVRGTGPLFAVIGAYLLFGETFTLVQWLGVGVLLA
GIFGLAVYNYIFLVTARETLGIALLLALATGLFVALYTTYDAYGIRATADPFTFLAWFFMIDGMTMPIYA
YWRWRRMGTDRPTVGPLMLRGFFGGLVAFASFGSIMLATRLDKVGEAAVLRETSTVFAALIGWLVLKETV
GPRRIALMALIAAGAVIVEMGG
>gi|99081783|ref|YP_613937.1| signal recognition particle-docking protein FtsY [Ruegeria sp. TM1040]
MALFSKLKERLLKSSSRLGKEVDAIVEEGAVAPEQAPDPAPETASPAAPAAQPAERAPGPEPIEAPAARA
STSAPAPIVPSAPAEAPEASRPGLLGRLMGRTKPSEPRRVLDDDMLESLEEMLIASDMGVDTALRVTANI
AEGRMGRRVSGREIRELLAAEIARVMEPVARPMPLYPSKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKS
VVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTKAEADGADLLMIDTAGRLQNRADL
MEELAKIVRVIRKKDPNAPHNTLLVLDATTGQNALSQVETFRQLADVSGLVMTKLDGTAKGGVLVALADK
FGLPIHAIGVGEQIDDLSPFDPEEFAAALTGLEEGA
>gi|99081784|ref|YP_613938.1| YhhN-like [Ruegeria sp. TM1040]
MINESAMMLETVTLLLAGGFALGYLWQVHADESWSRSGFKTASVLSLALVAGLSTPLLAVALGLCAFGDL
ALSRPGERAFLAGVGSFAGGHLAYVGLFLSLPDADVTRLWTAPAGWAVIALAGVALAMMSLLARFAGEMR
VQVMAYVPVIVAMGLAALTLPTPLIWCAAVMFMISDMVLAVETFVLPPAHPARRLTAPVIWLLYWGAQAL
FFAVLIL
>gi|99081785|ref|YP_613939.1| hypothetical protein TM1040_1944 [Ruegeria sp. TM1040]
MFSYSLSRTALVLGLALLSAVPLSANDAEEFNSYTQGRTIHFSWEGQAYGAERYLPGQRVIWSFLDGRCV
TGEWYMQSGDICFVYEDRPEPQCWRFDIGDNGLSVSIARDDGSVLTLRERLSVRDEMVCLGPEVGV
>gi|99081786|ref|YP_613940.1| exodeoxyribonuclease VII large subunit [Ruegeria sp. TM1040]
MSDLLDDPTPGQNAPEFSVSEISGEVKRTLEGTFGRIRVRGEVGRVFKARSGHLYYDIKDDRSVLACTTW
KGQISGLSVVPEEGLEVVVTGRLTAFGGQSKYNMNVDEVAVAGQGALMALLEKRKAQLAAEGLFAPERKK
PLPYLPGIIGVITSPSGAVIRDILHRLRDRFPRKVLVWPVAVQGSNSAPEVARAIDGFNALTPGGALPRP
DLIIVARGGGSIEDLWGFNEEIVARATAASDIPLISAVGHETDTTLIDYVSDLRAPTPTAAAEHAVPVRL
ELLGWVENQGARMANAASRAVQLRRQRLGDMARALPRPDTLLETPRQRLDRVSDRLPNALISGVQRRKLT
LSDRAASLRPATLRGLVSSRQDKLKNLSSRLTLRPITQDLGRKRDALDRITKRLNTAQSSRIDRQIDRLS
ATARQLDILSYKATLRRGYAVVRDGAALVTSTEGARKAAELSIEFADGTFDVASAPSTTKKSAPKPAAPK
APKTPGEQGSLF
>gi|99081787|ref|YP_613941.1| phosphoribosylamine--glycine ligase [Ruegeria sp. TM1040]
MNILILGSGGREHALAWAVMQNPKCDRLIVAPGNAGIAQIADCASLNAEDGGAVVTFAEENAIDFVIVGP
EAPLAAGVADRLRDAGILVFGPSEAAARLEASKSFTKEICDAANAPTAGYGHFTDAEAAKAHVRANGAPI
VVKADGLAAGKGVIVAMDEQTALDAIDDMFGGAFGGAGAEVVIEEFMEGEEASLFVLCDGEEILSIGTAQ
DHKRVGEGDTGLNTGGMGAYSPAPVLSAEVEAKAMEEIVKPTMRVMAERGMPYQGVLYAGLMIKDGQPRL
VEYNVRFGDPECQVLMMRLGAQALDLMQAAAEGRLADARVNWADDHAITVVMAAAGYPGSYEKGSEIKGL
DALPEDSMNMVFHAGTKADGDKILANGGRVLNVTARGESLSEARDRAYAMVDQIDWPEGFVRRDIGWRAL
>gi|99081788|ref|YP_613942.1| integrins alpha chain [Ruegeria sp. TM1040]
MGSGGKARRLRARVLPPILRRAAQILSVSLAVLAQAAPGAAREHWRVLGAEFSEPTTRYGHAVLGDDVEY
GSLLIRRVETGSTATQTLEIKLPLTHVFEDLEPRLWDVTGDGLPEVVVIETDMSRGAQLAVYDAEGNKRA
ATPHIGQRNRWLAPIGAADLDGDGHIEIAYIDRPHLAKTLRIWRYEGHNLVEVASATGLTNHKIGQDFIT
SGLRDCGAGPELITVSAGWSRIITSRLEGGAVISRDLGPFDAEKGLRATLACAAN
>gi|99081789|ref|YP_613943.1| ferredoxin [Ruegeria sp. TM1040]
MGLARCRRQRYTRYRVPKKGRRIMAKITYIEHNGTEHVVDVANGLTVMEGARDNNIPGIEADCGGACACS
TCHVYIAPDWVEKLPAKDDMEEDMLDFAFEPDAARSRLTCQIKVTDALDGLVVHMPEKQI
>gi|99081790|ref|YP_613944.1| peptidoglycan binding domain-containing protein [Ruegeria sp. TM1040]
MTPAPFERVGRPAPPGAPPGTCWEPVIIPARIETITEQVMVSPAEAGTDGNAGKPAVFATETRQVITRPR
EETYFQTPCPEELTPEYISSLQRALAARGLYVGDITGRLDVDTRAAVRAYQQSLDIQSDTLSLQAARSLG
LSAVALDD
>gi|99081791|ref|YP_613945.1| Crp/FNR family transcriptional regulator [Ruegeria sp. TM1040]
MAAAPLPASSFLSGASERLRAMLDSQATDVHLETGDVLFERGDEGDALYAIISGALEISTLSAAGRKLSL
DMMRPGAIFGEIAMFDPGERTATATAAEPSHLRRLRHRDVLAQLTKHPELAGDMLKLAGQRMRWMNTQLN
EQVFLPMPVRLARKLLYLTPADGNGQLSLSQSELAEFVGATREAVSKTLSNWRKAGLIEISRGGLHLKDR
GGLAVLADPEGI
>gi|99081792|ref|YP_613946.1| tetratricopeptide TPR_2 [Ruegeria sp. TM1040]
MPFRVLHFAEPEETVFAEGISEDITTELSRFHAIRITSRMSSFQFNASERPAQEIATTLGADFILSGTVR
RALNRIRVVVELYETLEDRQIWSERFDRADADIFAVLDEISGLVAACMTGEVQLAETRRTKAKAGQDLTA
YEALLVGQDLHKSGDISPRVATRAVAAFSEAIDAAPDFARAYAWRACSFSRTWDFPVRQDQFDQVSQDVF
KALEFDPAEAEAHRIAGAVCRALHEFDRATLHIEKALELNASDAHIAAKSAEHFAFIGQPQRAHDLINKA
MALNPMFSGWYWEIIALADYVASQYEEALAAITRAASPTFAGFAYQVGSLLALGRTEEAKEAVALLKAQY
PDVTLAVYQRDGRRFAFADGQPQKV
>gi|99081793|ref|YP_613947.1| peptidase S1C, Do [Ruegeria sp. TM1040]
MHPISSSKAIGRARVHEGAHSGWRLFWISVLGTALLVMQSLSAAARPESLAPLAEKVSPAVVNITTSTVV
EGRTGPQGIVPEGSPFEDFFREFQDRNGGGTRPRRSSALGSGFVISEDGYIVTNNHVIEGADEIEIEFFP
GEGQPADLLPATVVGTDPNTDIALLKVDAPMPLSFVKFGDSDKARVGDWVVAMGNPLGQGFSLSAGIVSA
RNRALSGSYDDYIQTDAAINRGNSGGPLFNMDGEVVGVNTAILSPNGGSIGIGFSMASNVVTKVVSQLKE
FGETRRGWLGVRIQDVTDDLAEAIGLASDEGVLITDVPEGPAKEAGLLARDVITSFDGFEVKDTRDLVRR
VGDTEVGKTVRVVVFRDGKTETIRVTLGRREDAVGNGTEGGGAEAVPDEGEKELLGLTVGVVRDDMREDL
NLDAGTTGLVILSVDETSGAWEKGLRAGDVITEAGQNKLSSIADLEAQIAAAEEGGRKSIFLMVRRAGEP
RFVALNLED
>gi|99081794|ref|YP_613948.1| hypothetical protein TM1040_1954 [Ruegeria sp. TM1040]
MPSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKIASLLMPSALI
GGLWLSQRVSIALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVKWTEVQAVSEDRKSWLIYPAF
LPAQSYLLPKRCLTADFQEALKAQLMAAGAPRK
>gi|99081795|ref|YP_613949.1| HflC protein [Ruegeria sp. TM1040]
MNRSVILLVLLGAIVVGALSSLFIVDEREKALVLRFGRVVNVQEDPGLAFKLPFVDEVVKYDDRILSLEV
GPLEVTPLDDRRLVVDAFARYRITDVRRFREAVGVGSEAAAESRLDNIMRDQTREVLGTVSSNDILSSDR
AALMLRIRNGAIAQARDLGLEVIDVRLKRTDLPQANLEATFARMRAEREREAADEIARGEEAAQRVRAQA
DRTEVELVSEAEREAEVIRGEADAERNNIFAEAYGADPEFFEFYRSLTAYARALQGGNSSLVLSPDNEFF
NYLKSSDGAGRVQQ
>gi|99081796|ref|YP_613950.1| HflK protein [Ruegeria sp. TM1040]
MAGNSGGPWGGGGSSGGGGNRGNNGGNNGGGGGGRRPDDGQIPEIDELVKKGQEQLRVLMGGRGGNGGNG
QGPQGGGSGGSPLFTKGGLMLGAVAAVFLWGYNSFYTVKTEEKSVELFLGEFSAVGNPGLNFAPWPVVTY
EVVPVSVEQTESIGAGARGSDAGLMLTGDENIIDVDFQVVWNINEPDKFLFNLRDPKATIQAVSESAMRE
IIAQSQLAPILNRDRGLISQRLEELIQSTLDSYDAGVNIVRVNFDGADPPEPVKDAFREVQSAGQERDRL
EKQADAYANRKLAAARGQAAQTLEEAEAYRAQVVNQAQGEASRFTAVLSEYEKAPEVTRKRLYLETMEDV
LSRVDKIILDDNAGSEGGQGIVPYLPLNEIRRSGGSN
>gi|99081797|ref|YP_613951.1| NADPH-glutathione reductase [Ruegeria sp. TM1040]
MSFDYDLFVIGGGSGGVRAARVAAAGGASVALAEEDRYGGTCVIRGCVPKKLMVFASEYSGMVEDGRAYG
WDLENKGFDWDHFKQKLNTELDRLEGIYRNLLKNSGVESFDARAKLADAHTVELSDGTRKTAKHILIATG
GRPWVPEFPGSELAITSNEMFHLEKLPESILIVGGGYIASEFAGIMNGLGVKTTQYYRGAQILRGFDDEA
RGLVAQEMIQSGIDLKLGTNVLEMRREGDKIWVKATNGDEGLFDQVMFATGRKPNADNLGLEELGIARGR
GGEIEVDQYSQTAVPSVYAIGDVTDRVNLTPVAIREGMAFVETVFNGNPTSPDHDLIPTAIFTQPEMGTV
GLSEEEAAKQETIEVYATSFKPMQQSFAGRAQRVLMKLIVSQATRKVLGCHIVAPGAGEMIQLAGIAVKM
GATKEDFDRTVAVHPTMSEELVTLKTPVRTI
>gi|99081798|ref|YP_613952.1| hypothetical protein TM1040_1958 [Ruegeria sp. TM1040]
MCGAPKAGIVLAFCTLDLTPMYSETPDGHDGSPTADVPMRDKVPNWGILLLLLTTPQVMTFLLPESILAR
FSGPQYLREIWSIASFVTIMALSSEGSWNDRFLRVNAWGIHYGRTYSRGSGWGTFWARKEGTVNALRWAD
VVSVTYFPKSMLTGYARLRVRAQVPLGARYDLTFKTVSLDPKCANPADPEVARVQLALDRYWPEWREGN
>gi|99081799|ref|YP_613953.1| transmembrane pair [Ruegeria sp. TM1040]
MRSPLDRLRHALSFEIIALLLIVPLGAAVFHFPLHAIGAVGIVSATLATLWNLIYNWGFDAILQHWRGST
LKTPMLRVLHAVLFEGGLLIVLMPFIAWYLQVSLWQAFVMDVAFALFYMVYAFGFNWAYDRLFPLKEWQE
DHAAQH
>gi|99081800|ref|YP_613954.1| ribose-5-phosphate isomerase A [Ruegeria sp. TM1040]
MSGDLSPIDKAKFVAAKRAAELVEDGMRVGLGTGSTAAWLVRCLGEMVREDGLKITGVPTSARTAELARE
VGIELITLDEARWLDLTIDGADEFDSELNLIKGGGGALLQEKIVATASDQMVVIADKAKEVETLGAFPLP
IEVIPFGWQTSQALVEETLISMDVMGRSSTLRMNGASPYVTDEGNHILDLHLNRIGNPRQLALVLNQIPG
VVENGLFIDICDTVVIGYGDGKVEVRDINEGTIETDRIDFVETDNLFADLND
>gi|99081801|ref|YP_613955.1| glutathione S-transferase-like [Ruegeria sp. TM1040]
MTKVLRLHYAPDNASLIVRLALEELGLPYECQLVDRRKAAQKSAAYLQLNPNGTIPVLETPDGPLFETAA
ILLWLADQNAALAPQPGSAQRGAFLTWLFWCSNTLHADLRQYFYPEKIIGPEETHQDQLRRVLQSRLHQH
LGMIDTALVRTPGLTDEADPTLLDLYLPCLLRWTKLYANRGPKPWFDLTSYPALHALCHRAEGRASTKAA
QTAEGLGPTPFTTPKFATPPEGSAT
>gi|99081802|ref|YP_613956.1| L-serine ammonia-lyase / 2-hydroxymethylglutarate dehydratase [Ruegeria sp. TM1040]
MFLSVFDMFKVGIGPSSSHTMGPMVAAARFLDMMRASPFDFHGLRASLHGSLAFTGVGHATDRATILGLA
GFLPDTYDDDKAEAALAAITETKTIVLEDLGTLRFDPKADMIFDYDHALPGHANGMVLMALDAQGDVTLR
QVFYSVGGGFVLTEEELAQGKATDEGDPVPYPFKSAAEMLEMAKTSGLSIAQMKRANEVSRGCEQSFAKG
TQRLWQVMNDCINRGLERDGILPGGLSVRRRAKGIYDALMAERGMNLTAPHTINDWMSVYAMAVNEENAA
GGQVVTAPTNGAAGVLPAVLRYYLDHVPGASEKHIEDFLLTAAAIGGLVKYNASISGAEAGCQAEVGSAS
AMAAAGLCAVMGGTPEQVENAAEIALEHHLGMTCDPVKGLVQVPCIERNGLGAIKAVSAASLALRGDGQH
FVPLDAVIETMRQTGADMHEKYKETSLGGLAVNVPNC
>gi|99081803|ref|YP_613957.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MKTPDTRLTLIKTASKLFRRKGYSGVGLSEILTAAGLPKGSLYHHFPGGKPELAAAATRWAGAWIESLVQ
RSFEGAETFEEGAQAACRDLAATLVQVDHIEACPVLSVLQAASDTPVLQEAVQEVYARWTAELAREARRL
GRAQPDAVAQSLHIRLQGAWVMAYAQQSQAPFLHLADEIAAEAARNPAEP
>gi|99081804|ref|YP_613958.1| hypothetical protein TM1040_1964 [Ruegeria sp. TM1040]
MSQAPNVVSFGSSQAPLVGKWHPAHGPQRAAMVVHGATGVPQRFYRHFAHWAAQQGIATLTYDYRDFGES
LTGATRSSPARMADWAVADQDAAQHKLAELAPTGPLWVLGHSLGGLGIAFHRYPERVSRVITMGAGMTHY
RDHPWHYLPKALAFWFLIGPVATGALGYLPGRRLGFGEDLPSGVYWQWRRWCTRRDFFARDIGKSLPQPN
FNATEPPLELCVARDDDMVPPAAVRRYAAHFAPDRTQLRLFDPANYGLGTLGHVGCLGAGCEAAWQDLMF
PDAAEARTGAA
>gi|99081805|ref|YP_613959.1| hypothetical protein TM1040_1965 [Ruegeria sp. TM1040]
MTQTSATPDTTDRPLLGIALMLGFCALIPLGDAVAKLLSTRIPVGQIVFVRFAAQGVILAPVALMLGISL
RLPRRILPIVLLRTLLQMGGITAMFMALRFLPLADAVAIAFVMPFIMLLLGKYVLKEEVGLRRLLACVVG
FAGTLLVIQPSFAAVGLNALWPLAVAVIFAVFMMVTRTIARDTDPIAIQAVSGGIASVLMAILFVLGAQF
EVAELATNLPARPEINLLLLAGLFGTIAHLLMTWSLRYAPTSTLASMQYLEIPVAVFVGWLFFAELPNTI
AACGIALTMAAGLYAVMRERQVSRAARKVDPTPISKTGLPASPE
>gi|99081806|ref|YP_613960.1| thiamine pyrophosphokinase [Ruegeria sp. TM1040]
MTEAIVRETAPITLIGGGDVTRSDLAEALAHAPVLVAIDGGADQALALGAQPQAVIGDFDSVSDHARTAL
SQSILHLVAEQETTDFDKALRSVEAPLVLAVGVLGARLDHQLAALHVLMQPHAKTCILIGAHEVVVHLTA
SLELELQAGDVVSLFPLLPVSGRSDGLEWPIDGLELSPLSRIGTSNRATGSIRIEVDGPGLLAILPRHCL
GALIQVMQAGPSC
>gi|99081807|ref|YP_613961.1| putative CheA signal transduction histidine kinases [Ruegeria sp. TM1040]
MVQNNKVLTVSYGTFSCTLEGFEDSFDTMKAIAEYFRDLAADDRYFGAEPPQPDAEMMARIAQREIARQV
EARSGEGGIHLRAAAPATAPTAAPAPAPASVAPPAPAAPEEDQSTAPAVARTDDLTSDSPRTTPEAAPQM
QPAVLNEAPDAPVATVPVDVSEDVAEPEAEDTVPAADSIAAKLQRIRAVVAKAPHQDEEFIEDEHADAVE
TDASDLAAETTAELYEDHYDGEEDAEDADVASDEETVSDILDRLDLTGTRRKAETDDRADTAHGDTAEEP
APSQEDTEAQAEAQPAAAERPQRPRTIRVMPKRATSETEGPAEAPSDTPETASTAKATPKPAPPLRLGDD
TAVSVPSGEQPSNEQAASEAAPSEPVRPRRPVRGRVIRVKRAQADESLIDATAEDVTPRQRPEATPPVST
SLSEDDEAELMAELAAVEAELMASTTDTDEVPEQDETDGEDAFDDGGPAVAPAAPAAPRATERPAREILT
SRGGSPDGDVSRLMAAADDRLSDEDAASSRETYNQLRAAVAAAQADPGDSDEQRREARTRAFRDDLASVV
RPSRAASAEPGSGRGTATSRPAPLKLVAEQRIDPAPQENTPTMAPAAASAPVRPRRVSSVLAASEEEDAA
PATRQQDGAFASYASEKGAVELHELLEAAASYMSFVEGRESFSRPQLINKVRTLDGQSDFNREDSLRFFG
QLLREGKLKKASNGRFSVSSQIGFRPGNRAAG
>gi|99081808|ref|YP_613962.1| hypothetical protein TM1040_1968 [Ruegeria sp. TM1040]
MAKEGLSYRARRIWALVILLVGMPLYIVLAVTILNLLDRPPIWLELLVYVGLGVAWVLPFKFVFKGVGQK
DPNALYDEHPD
>gi|99081809|ref|YP_613963.1| adenylosuccinate synthetase [Ruegeria sp. TM1040]
MANVVVVGAQWGDEGKGKIVDWLSERADVIARFQGGHNAGHTLVIDKKVYKLHALPSGVVRGGKLSVIGN
GVVLDPWHLMKEIETVRAQGVEITPETLMIAENTPLIMPFHGELDRAREEAASKGTKIGTTGRGIGPAYE
DKVGRRAIRVADLADDATLEARVDRALQHHDPLRKGLGVEPIDRDALVAQLKEIASEILPFAAPVWKVMN
EKRKAGKRILFEGAQGALLDIDFGTYPFVTSSNVIAGQAATGVGIGPNSIDYVLGIVKAYTTRVGEGPFP
TELLGADGKPDADGERLGTRGHEFGTTTGRQRRCGWFDACLVRQTCATSGINGISLTKLDVLDGFETLKI
CVGYELDGERLDYLPTAADQQARCKPIYEEMEGWSESTEGARSWAELPANAIKYVRRVEELIQCPVALLS
TSPERDDTILVTDPFAD
>gi|99081810|ref|YP_613964.1| hypothetical protein TM1040_1970 [Ruegeria sp. TM1040]
MTVPETKLNTADQMQRPEPAFEAPWHAQAFALAVHLNESGRFTWPEWVERFSAALKEAGLSRELNGGDDY
FTVWLATLERLMSDQGHTDPAEVARVREDWAEAYLSTPHGAPVHLPEGRG
>gi|99081811|ref|YP_613965.1| nitrile hydratase [Ruegeria sp. TM1040]
MSRIHDMGGRYGDGPITPEPLDAPVFPEDWHGRALAVTLACGALGQWNIDISRHARECLSPSDYMNFSYY
EKWLAALADLLVAQGVLRREDLSDVDEAANDSDAAEPAHPLAERCLSADRVAAVLAAGGPADRKSPVAAQ
YQPGDFVRTRLSGNRLVAGGHTRLPTYASHAQGQILRLHGTHVFPDSNAHGQGEAPEPLYAVAFAARDLW
PQAEHPNDEVVLDLWQSYLEPVSS
>gi|99081812|ref|YP_613966.1| nitrile hydratase, alpha subunit [Ruegeria sp. TM1040]
MPHDHHDHPHSLLPSEPALRVKALETILTRKGLIDPAALDAIIDTYENKVGPQNGARVVARAWSDPAFRA
ALLEDADKILDEMALNGRQGEHVVVVENTPERHNMVVCTLCSCYPWPLLGIPPGWYKSDAYRARAVREPR
KVLAEFGVTLPADTSVRVWDSTAEVRYLVLPMRPEGTDGWSEEALMTLVNRDSMIGTALATPASEAPA
>gi|99081813|ref|YP_613967.1| CTP synthetase [Ruegeria sp. TM1040]
MARFIFITGGVVSSLGKGLASAALGALLQARGYSVRLRKLDPYLNVDPGTMSPFEHGEVFVTDDGAETDL
DLGHYERFTGVPARKTDSISSGRIYTNVLEKERRGDYLGKTIQVIPHVTNEIKDFISIGEDEVDFMLCEI
GGTVGDIEGLPFFEAIRQFSQDKPRGQCIFMHLTLLPYIKASGELKTKPTQHSVKELRSIGLAPDILVCR
SEGPIPVKEREKLALFCNVRADSVIAAQDLKSIYEAPLAYHREGLDQAVLDAFGIAPAPRPTLDTWEDVA
DRIYNPEGEVKVAIVGKYTQLEDAYKSIAEALTHGGMANRVKVRIEWVDAELFDKEDATPYLQGFHAILV
PGGFGERGTEGKIKAAQYAREHKVPYLGICLGMQMAVIEAARNVAGIEEAGSEEFDHEAGKKRFEPVVYH
LKEWVQGNHKVSRSADDDKGGTMRLGAYDAALTEGSKVAEVYGSNAIEERHRHRYEVDIKYREQLEACGL
KFTGMSPDGRLPEIVEWTDHPWFIGVQFHPELKSKPFDPHPLFKDFVRAAKDTSRLV
>gi|99081814|ref|YP_613968.1| hypothetical protein TM1040_1974 [Ruegeria sp. TM1040]
MPEPGTITSKEPREEFPVIGTEEVPAVFFDGDKLLLCYEVAAIEGGGLAILEFDEVLDFRVDPMNVDELS
DSPYPVSAWNMTEICGSEKAARWAAMDARYWSISFTDMTLTILFDTVRLAGRSREKRLPHEALKHFIGSS
LAA
>gi|99081815|ref|YP_613969.1| hypothetical protein TM1040_1975 [Ruegeria sp. TM1040]
MIRAFRSLIERQMAKAAQSGQLSGLEGEGKPLPDRSGEALVDPGLAAGVRIMAEAGAVPEEFPLKKQLDA
ARAAYPKITDPDARKAAMAELADLEMRYNMARDARKAFFR
>gi|99081816|ref|YP_613970.1| fructose-1,6-bisphosphate aldolase [Ruegeria sp. TM1040]
MATDPAIQQQQFDRIATGKGFIAALDQSGGSTPKALALYGVMEDAYSNDDEMFAEIQKMRARIITAPDFN
SDKILGAILFEKTMDNAIDGTAVPVYLWEKCGVVPFLKVDKGLADEANGVQLMKPMPELDALLSRAVAAG
IFGTKMRSVIKEANADGIKAVVAQQFEVGLQIARAGLVPIIEPEVDINSATKDEAEALLKGEIAAQLDAL
PEGTQVALKLTIPSEAGLYDSLADHPAVVRVVALSGGYSTDDACARLSQNSKMIASFSRALTEGLNVAMS
DDEYNAALGSNIDKIYNASL
>gi|99081817|ref|YP_613971.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MTFDMNALLATYDLDGANQALLQKRAKMILGLLPEVLDHFYDRVGREPEMAAFFKTEAMMERAKGEQLQH
WSRLFSGDFGEDYIQSARNIGRVHTRIGLPFSFFNAGYAHANAHIQALILKRHSGGLMRRATETHALLGV
LSRAMALDIQLIFDAHAEAMQEEHTRGVRYITEAIEALAAQDLSHEMPSAQTGDFPSEFNGVRESLNAAF
GALRQVIQGIRSTAQQLDTGAAEVSHASQDLSQRTESQAATLEETTAAVEEITVSMRASAEATQQTRNAV
DTTRRRAEEGSAVVRNAVEKMNEIADSSVQISKIISIIDDISFQTNLLALNAGVEAARAGESGRGFAVVA
SEVRNLAQRTADSAAEIKGLIDISNDHVESGVELVGNAGRMLESIVRHIKEASELTEQVASAAEQQSTAF
GEINIGMSQLDTVTQQNAAMVEQSTAALVEMRNDASALNALVEVFRLRAGEQGGGGQEIALRAAS
>gi|99081818|ref|YP_613972.1| hypothetical protein TM1040_1978 [Ruegeria sp. TM1040]
MQKTCFMTVGVAKQTRASSLITPDSEIWPQVIRDPRNGPKYVFQMCVWVRFALFSPIWIGTGHEACACSP
LAVFLKRLSADVNKGWDKFHARQARARSSALSP
>gi|99081819|ref|YP_613973.1| fatty acid hydroxylase [Ruegeria sp. TM1040]
MRLKLLLSHPSVPVMLAAVALGIAILWAEGATWQWGFVVLGVGLQMLNEYGLHRYIFHLKPPRQQWAFDL
LYQAHYGHHDFPTNHKLFFAPIWVAVPMLVVNFAVIFGLLWLVLPAYALSLAAAIVLVGGVATFLGYEWF
HMTAHLTVTKTRVERHVTQLHNQHHFRDFSKWFHVSPGGEVIDRAMGTAIDRETLKSQQRIEFIRTLGMT
PDDPRLVAARDRFAHRYGLSAEERARACRA
>gi|99081820|ref|YP_613974.1| enoyl-CoA hydratase [Ruegeria sp. TM1040]
MAEESARVSVEIRDHVAHVTLTRADKMNAVDKHMLAAVIAAAKEVAASDARAVVLSGAGKSFCAGLDVMS
FAAMGQMQDTGWIMDRTEGEANDFQAVAMMWRALEIPVIAALQGATFGAGLQIALGADIRIAAPDAKLAV
MEMKWGLVPDMGGMALLPQLVRSDVLRLLTYSATPIEATQAETWGLVTEVAEDPLARAEALAAEIAGKGP
RAIRAAKRLIAYAESGASTADVLLRESEEQAALIGKPEQMEIVMANMQKRAPVFK
>gi|99081821|ref|YP_613975.1| histidinol-phosphate aminotransferase [Ruegeria sp. TM1040]
MTDSRQTPLAQSLPASVPFVGPETHERQRGAPFVARLGANENLFGVSPKAIAAMQASAAEIWKYGDAESY
ELRAALSALHGIAPEHIMVGEGIDGLLGNLVRLYVGAGDAVVTSLGAYPTFNYHVAGFGGDLHTVPYKDD
HEDIKALMAKAHEVGAKLVYLANPDNPMGSWHRGADIVAALDDLPEGSLLVLDEAYVECAPKGTAAPVDV
TDPRVIRMRTLSKAYGMAGARVGYAMGAVEVISAFHKVRNHFGMNRCAQIGATEAIKDQAWLAHVQAEIA
TAREEISRIARENGLTPLPSATNFVAIDCGRDGAFAKAVLEALVARDIFVRMPFAAPQNRCIRVSCGPER
ERRAFAEALPLALKDAQNGA
>gi|99081822|ref|YP_613976.1| hypothetical protein TM1040_1982 [Ruegeria sp. TM1040]
MKRHNLHHDNTEFLSATLSFLAVNLLWIFFALWLLFGMVPVLLLAVTMNHMINRLEVRMIRAEQRAGKGQ
GRTLDRRV
>gi|99081823|ref|YP_613977.1| aminotransferase, class V [Ruegeria sp. TM1040]
MRDSVKLSSGRSYLAIPGPSVMPDQVLQAMHRASPNIYAGELVEMTGTLPADLRRVARTQHHVAIYIANG
HGAWEAALSNTLQEGDKVLVPASGRFAYGWSEMAEALGINVEVMDFGLQAPFDLARVAERLAADKAYEIK
AVLGVHTDTSTSIRNDINGLRAAMDEVGHPALLMADCIASLGCDRFEMDAWGVDVMVTGCQKGLMVPAGM
SFVFFNDKAAEARARLPRISRYWDWVPRANPEYFYQFFGGTAPTHHLYGLRAALDLIHAEGIEQIWTRHE
TLARAIWAACDRWSEGGALAMNVADPALRSHAVTALRLPSPRATDLRVWLEENLGLTLGIGLGMAPPDSA
EWHGFFRLGHMGHVNGHMIMGLLGGIETGLRALDIPHGAGALESAAKVLAGAPS
>gi|99081824|ref|YP_613978.1| ABC transporter related [Ruegeria sp. TM1040]
MSTQYMSSRKLLRWLWRGYLRHHVGLLAIAVFFMLLEGASVGGLSYMMQPMFDLVFVDGSENALIWVSVA
FFAIFVLRGFSSVTQRVILATINQRSEAHMRTDMLERLIHQDASFHQHHPPGFLIQRVQTDVAAINQVWQ
AIITGSGRDVAQLVAVLTVAISVDWRWTLIMLIGVPLLVLPLSIVQRYVRKKASLARDLGAVQATRLDEV
FHGIVPIKLNRLEDYQSGRYRSATAAFVRAQIKAALGASSTTGMVDLMAGFGVMCVILFGGREIIDGDKT
VGEFMSFFTAIGLAFDPMRRLAAIMGIWQGAAAAMERIKELMDEPITLVSPEHPKPAPKGLPEIRLDNVN
LYYGEAHILRDLSLVAEAGKTTALVGASGAGKSTIFNILTRLVDPQTGSVTLDGTEVRDLDLGDLRDLFS
VVTQDALLFDETLRENILLGRTDVSEERLAEVLDAAHVSDFLHKLPEGLETRVGPRGSALSGGQRQRVVI
ARALLRDTPLLLLDEATSALDAQSEKVVQKALEKLSGGRTTIVIAHRLSTIRSADKIVVMERGRVMDQGR
HEELLERGGIYADLYRLQFQDGKTVIDTDGMNAQIAQNDNRNAREETGLLRRFARRLFG
>gi|99081825|ref|YP_613979.1| glycine cleavage T protein (aminomethyl transferase) [Ruegeria sp. TM1040]
MADRRILRLEGPDTRSFLQGLVSNDVNKVQDGLVYAAILTPQGKYLADFFLAADGDAVLLDVAEALADDL
VKRLKMYKLRANVTLEETDLKLRRGTGDAPEGALPDPRHPALGWRQYGKETFDDGSDWDVIRVTHVIPET
GIELTPDSYLLEVGFERLNGVDFRKGCYVGQEVTARMKHKTELRKGLTQVEIDGTVPVGAQITAGGKAVG
QVFTQSGGKAIAYLRFDRAKGALEAEGTALRWPEAPAE
>gi|99081826|ref|YP_613980.1| hypothetical protein TM1040_1986 [Ruegeria sp. TM1040]
MRRLFSKAILTTLLVGAGLVGATSVASAQEYWEYGDWRVFITDVDTGEDLRRTCLAMTGGDGMPSIRLEI
TDGDAGPPHHFPTPTYFSSVPRGHRPLIGNAQGVAFVFDRQGVFFGVAEGGYDDDGIAWSAASPRWQDAK
NMLLWMKAGSLMEVRALDAYRASTEAYVASMRGFTAAYGKMMDSCGHSLEIPQ
>gi|99081827|ref|YP_613981.1| elongation factor P [Ruegeria sp. TM1040]
MPKINGNEIRPGNVLEHNGGLWAAVKVDHVKPGKGGAFAQVEMKNLRNGSKLNERFRSADKVERVRLEQK
DQQFLYETDGMLVFMDTETYEQIELPADLLGDRRPFLQDGMTIVVEFYESEALNATVPQKVTCKIVETEP
VVKGQTAANSFKPAILDNGVKVMVPPFVGQDEMIIVNTETMEYSERA
>gi|99081828|ref|YP_613982.1| hypothetical protein TM1040_1988 [Ruegeria sp. TM1040]
MRDFVDGTAYNNEQGNRARKLFAAVVLAALDDAIADDKKYGNGPEQIARWARSRDGREVLTCAGIDPNER
VVEGLMEFVGRGVRTSVALSREESERRNAAQAEAA
>gi|99081829|ref|YP_613983.1| cobyric acid synthase [Ruegeria sp. TM1040]
MIQGTGSNVGKSMLVAGLARALRKRGLSVAPFKPQNMSNNAAVTSDGGEIGRAQALQARAAGLAPHTDMN
PVLLKPETDTGAQVIVQGKRRGTRAAGSFMRDKAGLLEATLESFHRLAAQHDIVLIEGAGSPAETNLRKG
DIANMGFAEAAGVPVLLVGDIHRGGVIAQIVGTHTVLEPSDRARIKAFAVNRFRGDLSLFDGGRDDIARW
TGWPSLGVVPWFWDAWKLPAEDMMDIASHKGGACKVVVPQLERMANFDDLDPLAAEPAVTVEIVPPGRAL
PGDADLVLIPGSKSTIGDLAYLRTQGWDIDILAHHRRGGHVLGLCGGYQMLGQSIDDPEGVDGHPGKVAG
LGLLDVHTVMAGDKRVTLSAARTLEGDLPVSGYEIHMGRTTGPDCARAWLALEGRAEGATSADGRVRGSY
LHGLFTSDAFRAQFLSDLGHQSDLDYDAGVEATLDELAAHLEQYMDVEGLLELAEPIPVPES
>gi|99081830|ref|YP_613984.1| hypothetical protein TM1040_1990 [Ruegeria sp. TM1040]
MSDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQASQEGRSDTGSN
GAQDNAATRAAASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEGSPHDRAAAPNEARQSHVATP
EPTPVAAPEEPIAEAPFVEVDEAGLKDVLDEAPNAPIPLDAVRRAEPQYAAPQETLDEAQPEHMGEVAPQ
VSPASPADTAADAPIETPVEAPADAPWRDPGARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATP
TVAGDEAVTSPGQSSRVAAVVRRIAELETAGRVEAAGTDEGRNRAPEINEDDIEAVPHSGPTVETIQWED
HQDTAPEPASFAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSIVREELQGALGERITRNVRKL
VRREIQRALSTQELL
>gi|99081831|ref|YP_613985.1| Type I secretion outer membrane protein, TolC [Ruegeria sp. TM1040]
MQKLLKSKRIKAFATIGVLATAVLSAPQARADNVTDAMIGAYTSSGLLEQNRALLRAADEGVAATVARLR
PVITATLAIARDYNRTGFGTGGARSSHSTGASLRLGMEWLLFDNGATQLDQAAAQETVLATRQTLLDVEQ
QVLFAAVQAYVNVLTQQDIVALRQNNLRLLQEELRAANDRFEVGEVTRTDVALAESRVAEARANLTDARG
ALLTARATYEEVVGRAPGAVASYPPLPRRAASLSDAQALALRSHPSLRAQQHSVRAAQLTADSSLRDMGP
NVKFTASATHSEVHSSDSNADNFDLGLSLNQTLYAGGALAAARRADLARLDAERGALISIQRSISSSAAS
AYTAFETAAASLVSSNQRVRAAQVAFDGIREEATLGSRTTLDVLQAEQELLDAQTARLSARANQALAAYQ
LLQAQGLLTAENLNLAVERYDPELYHNQVRSAPAFVTKRGQDLDRVLKALRKN
>gi|99081832|ref|YP_613986.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria sp. TM1040]
MTDFSDRRRMMVDTQIRPADVTKYPIIEALLAISREKFVPDSQAEVAYADQSVPLSTGRVVPEPRTLAKM
LDALDVRQDELVLDVACGFGYSTAVVARLAQMVIGVEEDESLASEAQEILSASNADNAIVHQGDLAEGAA
EHGPYDVIMIEGGVEEVPEALLAQLKDGGRIAALFMDGALGEVKIGYKSNGRVSWRFEFNAGAPVLPGFA
KPRVFSL
>gi|99081833|ref|YP_613987.1| TraR/DksA family transcriptional regulator [Ruegeria sp. TM1040]
MDFNVQRKCLETRLNALSSGMLAGQGLSALARDGVTIDDEVNLLTRQSKMTSLMGREVKAILTALDRMEA
GEYGYCRICGADISSEHLSAHPESPFCEFCSA
>gi|99081834|ref|YP_613988.1| entericidin EcnAB [Ruegeria sp. TM1040]
MRFLPTSETVMLSTRSLLGPSEILPRDGEPSMIRPLMMALMIFGLAACETTKGAGRDLQKAGQAISNTAQ
NVQNAI
>gi|99081835|ref|YP_613989.1| putative PAS/PAC sensor protein [Ruegeria sp. TM1040]
MNAGDIASTEQSRAAELEAAGGLRVPQLFSDLPEAVIVADHARRISWVNPAFERLFGYALSDVRGRTTEF
LYASHESYLEKGRAHFSAVPSASDHSYEVTYRRRNTETFLSQTTGGPIRGADGAPVGYLAVIKDISQTRL
FETLLRVLFDITTNQALSRDEKVHEILKLGCERFQTMSAIISCVQGQTYTVSYCYSHEAPVEPGTRFELG
ETYCAQTLTGEGPVAYHRASQSGIASHPCYDMFLLETYIGVPLIVDGHVFGTLNFTSPEARAPFEPMDLE
LIKLFAAWVSQQLSIDAALSAAKLR
>gi|99081836|ref|YP_613990.1| hypothetical protein TM1040_1996 [Ruegeria sp. TM1040]
MTKAHKTASLLCCGAERVLRWFSDNWRSGQHAGPARRLREGQCPLRAEQAMTRGFGMNILQSEICAVPLW
GWYSLPLRHVLVRFAWESY
>gi|99081837|ref|YP_613991.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MAHTAPHHKKISTLHMLVIGLSLAMTIGAWLYSKHQVDKQIEARFIASRDRTVDLIVDRMSRYEDALWSG
VAHARSLSGELNARDWHTFSETLHIEEKYPGVNGIGFIHNVERTDLPAYHEARSSEGRPIQIYPEHDLEY
LLPITYIEPEAANAAAIGLDVAHETNRRTGLLASRDSGSARITGPIVLVQDSGNTPGFLFYTPLYAGQMP
TTVAERRERFLGVVYAPFVVRKLVEGLLSKDLRDVRFSLSDGEAVIYDEHGPDEPLYDVDPMFTDTVVVD
MYGRKWTVNLRTNLAFRAQNSSAQPSLILAGGLVIEILVISLLVMLSRSTKQAHSLARDLTAELRAKTKH
LEKANAEIEQFVYVASHDLKTPARGIGFLVDVIEEELEDVLKSAQNRGELQMQLDMIRDRVARMNDLTKG
IMEFSRVGHYGSEGEPRLPVSNLIEDCVADFEVDPKQVHLASDVSEIACDSHNFRRVLENLIGNAFKYHP
HPRAAKVEVAIKDRGDRLTVSVKDDGNGIAPEFHDKIFDVFQTLRKGTEPESTGIGLAIVKKAIQRHGFD
ITVTSSEGHGAEFSFCWPKDRSQSSMDLENVA
>gi|99081838|ref|YP_613992.1| response regulator receiver protein [Ruegeria sp. TM1040]
MTRQMNILLVEDDDLDAMMIKRAMAQVAPDAHLIRATDGVEALEIVQSNRVEDPYFILLDVNMPRMNGHE
FLKELRASSEHSDTMVFMFTTSESARDIARAYQERANGYIVKPHGKAAMNSILDTLQRYWTTCEPPRTLA
>gi|99081839|ref|YP_613993.1| hypothetical protein TM1040_1999 [Ruegeria sp. TM1040]
MAQHHRRVSKTAHFKQGTFQTGRARKRSPPILPRRSGRAPSPGPTPKDALEHWSAAVCETIPCVGIPPAD
ASLNARAEAPQVFAFRLAADAPKKLQGLKENTARAVSEMMRVRDLQGMLKGSFVKGWRSIW
>gi|99081840|ref|YP_613994.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MRTLNRRNLLKGSVAAACLTVPAVRAVGQTNSLSEIGKLFAPVPRAKIFTARDIVTLDPSQPSAEAIAVV
GTRILAVGALSEVQEMLGDQPFDVDDSFADKVIVPGFISQHDHPVLAALSMSSEILSIEEWALPTGTVPA
VKDKADFMKRLTAAVEARTTPGEPVVTWGYHPAFYGPLTRADLDGISTERPILVWGRSCHEMILNSAALT
AGGVTQAAVEAFDAASQKQANLAEGHFWEQGLFAVLPHIASLVATPEQLRAGLELSRDFMHSKGITFGNE
PGGILAKPVQDGVNAVFSSPDMPFRWSFMVDAKSMVASYADDGEVIARSEALQSWYYGMTSLAPRQAKLF
SDGAIYSQLMQVRAPYLDDHHGEWMMEKELFERAFRVYWDAGYQLHIHVNGDAGLDRVLETLETNMRRNP
RFDHRTVIVHFAVSAFDQVERIKALGAIVSGNPYYVTALADQYSEVGLGAERADSMVRLGDLSRAGVRWS
LHSDMPMAPADPLFLMWCAVNRVTTSGRVAAPEQAVSAEDALRGVTIEAAYSLQMEEEIGSLVRGKRANM
TILAENPLEVDPMAIREIEVWGTVMEGRVLPVRSSDRAAATQQDASAGPREAVSPNGAPAFDKAALEHAL
KVTHAHHL
>gi|99081841|ref|YP_613995.1| hypothetical protein TM1040_2001 [Ruegeria sp. TM1040]
MQNAILILAAATVVICSPVLALVAQGRPTAGDVALVIAPPWGKSAGDIVTGAGLQDVTPERAPIGALVLL
ETPDSIDRLYREGAWLITDGKKVLELCKS
>gi|99081842|ref|YP_613996.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MQKLREPHADTSAIDSPARPIAKAANKRRIQRVTSWLLVPLPAAAAYFVNGLPLWWAFAALSLVLGAMAW
VSRKLPESTRDYLLSFCFIAHCILLTASLSGHAWQLDTHMMFFAALAIVSTLSSPRALIFATVLIALHHI
SFSVLMPSLVYPGGGIAENLQRTVMHAVIVLLEAGVLLLSMLRSLAADTELKTQQSAAEHQAQAAERAEA
LAMQSHKNAERVVSIVGDHLRELAAGRLDCKIDTSFPQEYAQLQESFNSTVDTLKGTIEQVKDATYRLSK
GATDIDQASENLSNRTESQAATLEQSVAALEELTTSVKSSAEGALSVQRTMDDARSEAVSSGGVVKDAVS
AMSAIEDSSSQIARNISVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAAEVQALAQRSADAATEIKS
LISQSSQHVDHGVDLVGQAGEAIEKIVERVEQISELVSGIATSAAEQSSGLGEINTGMSQLDQVTQQNAA
MVEQVSAASHLLHSDSKRLAQLMAHFETGAADQTQSAAAA
>gi|99081843|ref|YP_613997.1| 6-phosphogluconate dehydrogenase, NAD-binding [Ruegeria sp. TM1040]
MKIGFIGLGNVGGKLAGSLLRNGFDLTVYDLNPDLVAEYVEKGAQPGTGPLAIMRACDAVITCLPSPAAC
ATVVEEMLPAVDSSKIWMEMSTTDAAEVKRLAALVSERGGSAMECPVSGGCHRADTGNISIFAGCDRATF
ERMLPTLTTLGRRVLHTGDIGSASILKVMTNYLATANLLTCCEALVTMKAAGIDLNTTYEAMKISSGTSF
VHETESQVILNGSRDISFTMDLVKKDISLFQTIADAHGVPLEISPLLVEIFTDGIARFGERELSPNIIRR
LEEATGLSITAPGFPAEMVDDEPEEPGYEVVPTGLSAPLAKAPAG
>gi|99081844|ref|YP_613998.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MRRLPHVTWLRSFEAAARHSSFSAAAEELHLTPAAVSQQIRQLEHHLGFQLFKRLPKGVELTDIGQAYAI
PVRKSFVQMQEATDGLFRVQSKSVLRVRCSISFAALILAPLLRDFAEIHPDIDVELSTAVWSDRMEGAGV
DLDIRYGAACWPEQNVHPLPVEEATLVCHPDYAAQLGSALDPAWLGAADIVQIVGSETDWDRYLRLCGID
TPRPRHWMKADSSLIALQILSAGRGCALISRSFARQALSEGRLVAPFDLSLPMQESFVLVERDDLRENPG
LRKLVDWLLTQRL
>gi|99081845|ref|YP_613999.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MDHLPPLRLLVTFEAISRHGSMRDAAQRLNVTQPAVSQALKALEDHVGVALFDRSVRPARLTDAGEMLSR
AVREGLGRIAATLEDIRALHAIGERQVTVSCTLGMATYWLMPKLPMFYADYPELTVNVQAPATDLPVLSP
GIDVALRYGRGGWREGRTEKLFAEVICPVGAPALVERLLAEGATLAEAPLIHVRNPHNDHWAGWEDYLQA
RGIQRPRGGGQIFNNYVQAAQAIYDGRGLMLGWRSITGQAERDGALRAWPDGALDLGTSYFVTMPTTPSQ
DTLLFVDWVRKAAATV
>gi|99081846|ref|YP_614000.1| gamma-butyrobetaine,2-oxoglutarate dioxygenase [Ruegeria sp. TM1040]
MNDLSSPPTVATIAGLGDKGLDITLADGATHYFNYYWLRDNCPSSFSAMTRERSFDIFHLETAPRARTAE
IDGDALVIDWQDEDHITRMPLSWLNAYAGGQRRPDPADLSRVAWFGDHYPSVPRFSQPDLVSDDATRAKW
IEAMLVHGFTIVTDMPDSDAALTQTAELMGFVRPTFFGTYFDVKTHINPTNTAYTAGALELHTDTPAEEF
APGIQFLHCRINTVDGGESLYADGVAVANDFRKRDPEGFRLLSEVPIPFYCEHDTYDARSRQYVIELDQH
GEVEGLTISQHMADIFDLDQKLLDDYYPAFCRFGRMLQEEKYMMRFLMKGGECMVFDNHRIVHGRAAYTA
SSGDRYLRGCYVDRSEMRSTYRALVSEGRFKA
>gi|99081847|ref|YP_614001.1| hypothetical protein TM1040_2007 [Ruegeria sp. TM1040]
MTLTRALPDAEAQLRTDLADAFRICHMLGWSESVGNHFSAAVSADGQSFLLNAKWQHFDTIAPEDLLLLD
SRTAETPPDVDASAWCVHGTLHRRLPDARVVLHAHSPYATALACLEDPTMVPIDNNTARFYGRTAYDMSF
GGIADATEEGERLAEALGDKSVLVMGNHGVSIVGDTVAEAFEDLYFFEKAAQTLILARSTGARLAVLTDA
VAQNTADGWRAYQGMAAKHFAYLRSRLPPLPG
>gi|99081848|ref|YP_614002.1| HxlR family transcriptional regulator [Ruegeria sp. TM1040]
MSNSDVPPPASQTPVVDPSVRARAPVRMDRCGLAQAADILGDRWTLLILREAFYGVVRFADMQEDIGVPR
SILSNRLAKLVEAGLLCRFEYRENGARARHGYRLTERGRDLALTFLAMKQWWDTEQSTTPSVHFAPKGKT
GAVRVALLDEDGQEVDPETLRVVMG
>gi|99081849|ref|YP_614003.1| dienelactone hydrolase family protein [Ruegeria sp. TM1040]
MTTRFIPATPAARPIDQDDPLEDFERREVALLGLTKTVYVAGAGPAVIVMHELPGISPQVARFARWVREA
GFTVYMPSLFGRDGAVAQADEGAEVFKRVCISREFRVMAGMGTSPVVAWLRALASEAHEACGGIGVGAVG
MCLTGNFALSMMIEPAMQAPVLCQPSLPLDDPGAIAMSDEEAAAVRARMDQDDLTAQLYRFEGDSFCRAE
RLAAYFDRFGDRLTEKTLPDSAANPSPAPFFNAHVPTPHSVVTQHLIDAAGTETVKAVEEIIAFLRSRLH
P
>gi|99081850|ref|YP_614004.1| histidine kinase [Ruegeria sp. TM1040]
MSLEQKRLLDQVEQAVFVLEPDAEGIPRYTAFNRYALGHIQRREAEVLGLTIRDLFPGRYGETIYGHHLR
VLREGRPFTYQAHLPLHGAEHRIEVTLRPCLDDFGRVTHIVGTTKDISGLGHLQNLQLGAEMFHAEIEDF
VSLAAHDLRTPMRHVRTIAEMLREDFEDMGDGKLELIDMLEQIGTRATQLISDILAHAQATTTQSDVRAF
SFRDLVNEVLALLDPMGRCVCNISGDQVVGDRAATLIVLRNLIDNALKYGRRADGSPLHVDISLSAEPDD
FYAVEVKDNGPGLRDPAALLLNTGTLRTDGGFGLLGVHRLVRARGGTIDARNNEDQPGAVIRFTLPGHLP
SAAA
>gi|99081851|ref|YP_614005.1| hypothetical protein TM1040_2011 [Ruegeria sp. TM1040]
MGYRVAARVLSAAEVGGTHTREGCSFWPTPTFKSSGNRACIAGGPEGIQFKTDQNQTGSQIGIKTAATAW
TLMWDLMMAAGWTPQRFRSSHRFRVILLNGEKYSDHPLTLNPAFTDWMMGWPSGWTDPLQPVTGWCQWLR
HARTLI
>gi|99081852|ref|YP_614006.1| hypothetical protein TM1040_2012 [Ruegeria sp. TM1040]
MKGLKRPFNPASTQKLVAVKKSVNHCKKVRHATTATSTFANTTAPTVGIHGTYGKAWHLGGILGKRITFM
RITFGNDRPKTHPKPEQNKNKYRANKAYPKNRGKIGEVF
>gi|99081853|ref|YP_614007.1| hypothetical protein TM1040_2013 [Ruegeria sp. TM1040]
MTRLAGCPTARATWGDVCSLARRISLFDESEGLYETCRIVTLGSFCAPCSSCSSDEIWILWESMVPQGIF
KDVAGVLGL
>gi|99081854|ref|YP_614008.1| cell division protein MraZ [Ruegeria sp. TM1040]
MGRRFRGESHHKVDSKGRVSIPASFRRVLEASDPNWQPGDAPELVIVYGDHRRQYLECYTMEAIEEVDAK
IAALPRGSKGRKILERIFNGQSLPTTVDETGRLVLPAKLRQKIDLDKEAFFIASGDTFQIWKPETYEEVE
MAEAEKLMDELPDDFDPLEFLDGAGGA
>gi|99081855|ref|YP_614009.1| methyltransferase [Ruegeria sp. TM1040]
MTDRTAAPSGPHIPVLLKPLLAAVAPVTGRWLDGTFGAGGYTKGLLAAGADQVIGVDRDPLAFEMAQPWA
AEYGDRLVLQQGVFSRMDEYAQELDGVVLDLGVSSMQLDLAERGFSFMKEGPLDMRMSQDGPSAADLVAE
LSEVQLADVLYSFGEERASRRIAKAIVKERAQEPITTTLRLAEIIEGCLPRPKPGQSHPATRSFQALRIA
VNGEYEELMGGLLAAERALKPGGLLAVVTFHSVEDRMVKRFFQHRANKTGNANRYAPAMEEQPSQFELVT
RKAVGPDKDELAQNPRSRSALLRVGRRTDAAPVEITAKELSMPQLKETR
>gi|99081856|ref|YP_614010.1| hypothetical protein TM1040_2016 [Ruegeria sp. TM1040]
MRTLAYMMTILAVFGLAFWAYRENYATQQVLKETRVLRSDIADAQVRLSVLRAEWAYLNRPDRLRDLAEL
NFERLGLLPLRPEQFGRVDEVSFPPSGLVIEEGVEVSSYGQEADQ
>gi|99081857|ref|YP_614011.1| peptidoglycan glycosyltransferase [Ruegeria sp. TM1040]
MIRTPLRPLARILPARARGENPDLIERENLAQRHSEMEARARTRAEGRLLVLAAFFVCAYVAIGGRMAMM
ATSEPAEPVSVSGSAIANQRADIVDREGRILATNFETFSLYAQPPQMVEPLVAAEKLVSIFPDLDHERLV
KDFTGSRKFLWIKKKISPEQMQAVHDIGDPGLMFGPREMRLYPNGKLAAHVLGGASFGKEGVNAAEVIGV
AGVEKQFDDYLRDPANGGKPLELSLDLSVQHATEEVLYGGMKLMNAKGATSILMDVHTGEVISVASLPDF
DPNERPRPPTSGFDPSESPLFNRAVQGVYELGSTFKIFAAAQAIELGLVNPETVIDTRGPLRWGKFSIRD
FRNYGNEMTVSRIIEKSSNIGTARLAQQIGAERQRAFLGELGMLEPTPFEIVEASGGQPLLPRNWSELST
MTISYGHGISTTPMHLAAGYAAIANGGRLVKPTILKQTGPRLGERVLSKEVAEASLEMLRRVVSSGSASM
AEVEGYSVGGKTGTADKPKPRGGYYEDKVIATFAAVFPTDAPKYVLIVTLDEPEIIAYGEDRRTAGWTAA
PVAAEMIARLAPLLGLRPQIEPARISGVTLTSN
>gi|99081858|ref|YP_614012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. TM1040]
MTQRPALKLSQLGLTARAGLDPQITGLAVDSREVGEGFVFAALPGTRVHGATFVEQVLDQGAVAILTDAK
GAEIAGEAIAAAGAALVVAEDPRQALSGAAALWFGAQPPVMAAVTGTNGKTSVSTFLRMIWTELGHKAVN
LGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGLDQRRLDGVQLSAAGFTNFTQDH
LDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGAEMRAIAAARGQEIITVGRGLGDIALMGMRVDA
TGQDIRFTWHDRPFAKRLNLIGGFQAENVLVAAGLAIASGEDPEQVFDTLPHLSTVRGRMQLAATRDNGA
TVFVDYAHTPDAVATAIKALRPHVLGRLVAIVGAGGDRDATKRPLMGAAAQDNADAVIVTDDNPRSEDPA
AIRAAVMGGAPDALNVGDRAEAILRGVDMLEAGDALLICGKGHESGQTIGTDVLPFDDVEQASMAVAALD
GRMV
>gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria sp. TM1040]
MSLWTAQEAAAATGGRATSDWQVNGISIDTRTIEPGDLFVALKAARDGHDFVAQALEKGAGAALVSHIPE
GVAEDAPLLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLTPQGRTHAAVASYNNHW
GVPLTLARMPADTEYAVIEIGMNHPGEIAPLSRQARPHVALVTTVAAVHLEAFEDVAGIAREKAAIIEGL
EPGGIAVLNADLEETPVLRDVAQDAGVATRWFGQTSDDYCLQEAQLSGDVTRARIVQAEREFSAEIQSLG
VHFAMNATGALAAIEALGADLELALAGLQGWSPVKGRGARFTVGLPSGPVTVLDDAYNANPTSIGAALTV
LAATPTEGRRIAYLADMKELGPEEARLHAGLADHPALAKIDAVHCIGPLMKHLYAALPENKRGTWVETSA
EAASALPAQIQGGDVVLAKGSLSMAVARVVDAIREIGQGNAPS
>gi|99081860|ref|YP_614014.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Ruegeria sp. TM1040]
MLYWLTALSDGGDFFNLFRYITFRAGGAFLTALIFGFVFGKPLINVLRKRQGKGQPIRDDGPEAHLAKVG
TPTMGGLLIVGALLFSTLMWARWDNPFVWLVLFVTMSFGLIGFADDYAKVSKQNTSGVSGKVRLLLGFVI
AIVAALWASWNHPAELQNQLAMPVFKDVLLNLGYLYVPFCICVIVGAANAVNLTDGLDGLAIMPVMIAAG
TLGIIAYAVGRVDFSEYLDVHYVPGTGEILIFTSALFGGGLGFLWYNAPPAAVFMGDTGSLALGGALGAI
AISTKHELVLAIVGGLFVVEALSVIIQVLYFKRTGRRVFLMAPIHHHYEKKGWAEPTIVIRFWIISLILA
MIGLATLKVR
>gi|99081861|ref|YP_614015.1| hypothetical protein TM1040_2021 [Ruegeria sp. TM1040]
MVFSMVWAWWRQQAKGTPTIGSVNARRYKGIKERGMQALLNWSSYDQISQMESSLTVQLLQMSVFDFHSS
IDRGEMNDARVARLRDRDIEALQQIPDLAQVFILHHDGYVREAALKQLDGSVGAPGCIYALFWRTNDWVH
EVREAAHEALARVLPQTSAEVIVPAIRAALPRIASWGRWSQAGPGRITTLAQRDDVASALVDDVIQSEGA
ALTVVFRELCKTPKIDPQLERIFRKAHQPHIRGMALQILLSGKARWPLPQRRKVWIDKPSGRSRMELQFQ
SRDITVDADVLGLLQRAVTDHASIVRKHALDGMIALRHDREMAHTLDTLVAGLEDDPNIGVRSRVAFFQC
KRREENP
>gi|99081862|ref|YP_614016.1| putative Mrp (multidrug resistance-associated proteins) family protein [Ruegeria sp. TM1040]
MPVTQEEIRAALDRLELPGGGTLVSRDMLRALSIEGSTVRFVIEAASPEEASKMEMLRRAAEASVKALPG
VETVAVVLTAHGPAAPTKSAQKPAPSLKLGGHPKPQAAPMKPSGVKRILAVGSGKGGVGKSTVSANLAVA
LARQGRKVGLLDADIYGPSQPRMMGVSGRPASPDGTTIEPLHAHGVTVMSIGLMVEERKAVVWRGPMLMG
ALQQMLGQVNWGELDVLIVDLPPGTGDVQLTLCTKAELSGAIVVSTPQDVALLDARKALDMFDTLKTPVL
GLIENMSFFTCPDCGGTHHIFGNGGVAAEAKDLGLPLLGALPIDLETRLAGDSGTPIAAGEGVMAEAYAR
IAKGLVEGGMA
>gi|99081863|ref|YP_614017.1| hypothetical protein TM1040_2023 [Ruegeria sp. TM1040]
MAILNTIHAPKSLTSGGVAAMIEGLRARFAQYRVYRATLNELRELSNRELADLGLSRSMLKGIALEAAYG
ELK
>gi|99081864|ref|YP_614018.1| ATP-dependent DNA helicase Rep [Ruegeria sp. TM1040]
MSTFDEMDAFEGASLSARAMAARPMPYLDGLNPAQRDAVETLDGPVLMLAGAGTGKTKALTTRIVHLLNT
NKARTNEILAVTFTNKAAREMKDRVGRMLGQPAEGMPWLGTFHSICVKLLRRHAELVGLKSNFTILDTDD
QIRLLKQLIQAAGIDDKRWPARMLANIIDDWKNRALTPAKVPAGDAAAYNHRGTEFYDQYQTRLKELNAV
DFGDLLLHCVEIFQNNPDLLAQYHRWFRYILVDEYQDTNVAQYLWLRLLASGHKNICCVGDDDQSIYGWR
GAEVGNILRFEKDFSGAKVIRLEQNYRSTKHILSAASGVIRGNEGRLGKELWTEAEGGEKVRLIGHWDGE
EEARWIGEEIEAMQRGTRGMRQYGLNEMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAM
AYFRVVISPEDDLAFERIVNTPKRGLGDKAQQTIQTVARANGVSLLEGARLAVEDGLIKGKGGAALRRLV
ENIARWGQMTRTVLADPDDPDAVVEGVQSFEAFQARTEVSHVELAEIILDESGYTSMWQADKNPDSPGRL
ENLKELVKALENFDNLQGFLEHVSLVMDNDKQDAEQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSM
DESGLKGLEEERRLAYVGITRAEKVCTISFAGNRRVFGQWQSQLPSRFIDELPEEHVDVLTPPGLYGGGF
GAAAPSASAVAEPAVRSTIEERMSNADGYNSPGWKRMQARTAERGYSKPRKSEAQTIDLAATSSFTVGER
VFHQKFGYGAVVGIEGDKLEVDFEKAGPKKVVARFVSASDDIPF
>gi|99081865|ref|YP_614019.1| BLUF domain-containing protein [Ruegeria sp. TM1040]
MNRPLAFNRIARRRRLCYAGHKRQWRGKAMKMRRIIYTSDASPLMTDEKVAAIAEKSRRKNGSMGLTGAL
SFDKGRFLQLLEGPSEAVTARFEAIRRDARHQNIQIICDVPTNMRNFPNKPMALMLPGEVSEDMHEALSA
LFDLADEPVAPSRQTLGDLLPRFSELDAA
>gi|99081866|ref|YP_614020.1| L-lactate dehydrogenase (cytochrome) [Ruegeria sp. TM1040]
MAGMTLDQRYPALDDLRAKARTRLPRFVWEYLDSATGREATQARNRLCLDRIGLMPAILGGPQEVDLGTT
LFGTPLPRPFGIAPVGMSGLIWPDAEGHLARHAAQTNIPYGLSTVASQSPEDLAPHLGAQGWFQMYPPKD
EGIRKDMLERARAAGFKVLVLTVDVPVASRRERQTRSGLTQPPRLTPRLLAQVAIRPAWALGMARQHRGE
GGMPHMRTLDKYIEGAASALSSTAHIGYLLRTAPDWAYLEWLRDHWEGPLVVKGVLDACDAPRLEAAGAD
AIWISNHAGRQFDAAPAPIEVLEDIRAATTLPLILDSGIEGGLDILRALALGADFVMLGRAWHYALAALG
AAGPAHLHDILSKDLTANMGQLGIRTLAEVRDLKRLSLD
>gi|99081867|ref|YP_614021.1| BLUF domain-containing protein [Ruegeria sp. TM1040]
MHRFVYVSTAKQDLTAQQIADIAGACHRNNRRAGLTGMLVAHQGRFLHILEGDEAAIRRRAEKIQHDPRH
GDFKVLQAREIQMRAFLDWVFVHETPAALPLFGGVKVQPLRALLPINSPLRGRDLTVRHLVRDFLASFKQ
LLAA
>gi|99081868|ref|YP_614022.1| pyruvate carboxylase [Ruegeria sp. TM1040]
MTEFNKILIANRGEIAIRVMRAANEMGKRTVAVYAEEDKLGLHRFKADEAYRIGEGLGPVAAYLSIDEII
RVAKECGADAIHPGYGLLSENPDFVDACARNGITFIGPKAETMRALGDKASARRVAIEAGVPVIPATEVL
GDDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGEGYLEKMITRAR
HVEVQILGDKHGEIYHLYERDCSVQRRNQKVVERAPAPYLTDAQRAEICDLGRKICQHVNYECAGTVEFL
MDMETEKFYFIEVNPRVQVEHTVTEEVTGIDIVQAQILIAEGKTLAEATGKASQEEISLNGHALQTRVTT
EDPLNNFIPDYGRITAYRSATGMGIRLDGGTAYAGGVITRYYDSLLTKVTAKAPTPEKAIARMDRALREF
RVRGVSTNIAFVENLLKHPTFLNNEYTTKFIDETPELFQFAKRRDRGTKVLTYIADISVNGHPETEGRAA
PAADLKEPRAPRADTGNLPYGTRNLLEQKGAKAVADWMKAQRQLLLTDTTMRDGHQSLLATRMRSIDMIK
VAPAYAQNLSQLFSVECWGGATFDVAYRFLQECPWQRLRDLREAMPNLMTQMLLRASNGVGYTNYPDNVV
QFFVKEAAKGIDVFRVFDSLNWVENMRVAMDAVVESGKICEGTICYTGDILDPARAKYDVKYYVGMAKEL
EAAGAHVLGLKDMAGLLKPASAKLLIKALKEEVGLPIHFHTHDTSGIAGATILAAADAGVDAVDAAMDAF
SGGTSQPCLGSIVEALKNTDRDTGLDIGNIREISEYWEQVRAQYAAFESGLQAPASEVYLHEMPGGQFTN
LKAQARSLGLEERWHEVAQTYADVNQMFGDIVKVTPSSKVVGDMALMMVSQGLTRAQVEDPKSEVSFPDS
VVDMMRGNLGQPPGGFPESIVKKVLKGEAPNVERPGAHLEPVDIESTRAELSKELEGFKVDDEDLNGYLM
YPKVFLDYMGRHRQYGPVRALPTKTFFYGMEPGDEITAEIDPGKTLEIRLQAIGETDEKGEVKVFFELNG
QPRVIRVPNRLVKSSTTQRPKAEVGNINHIGAPMPGVVASIGVQVGQQVHEGDLLLTIEAMKMETGLHAE
RDAVVKAVHVQPGGQIDAKDLLVELE
>gi|99081869|ref|YP_614023.1| hypothetical protein TM1040_2029 [Ruegeria sp. TM1040]
MSEETTGQLPDVLWHYTTFDTLTAILTSQCLLASDFRDTNDREEILFGFKALRDAFGTHNTWNTTEGFAD
PVSAAIRENEERIIEDLESSFLHGQMICLSSARDSLSMWRGYGQLTNGGGNGAVAIGFCAADLQTFCGPS
DATLQSSTAHIQQNASGGFEGPSNVDYAFRNFPQLSNALSNEDYSADFHLKWTHYLAHWMKHRKHPAFAE
EREYRIWGHAYDGNDKGNSQHVVFVGNHDRRKFHLAPAPDDILGPLTHPLAIQKIMVGPKTDFAKVERFT
RNVFQSYTHDRPDMCASKIPFK
>gi|99081870|ref|YP_614024.1| hypothetical protein TM1040_2030 [Ruegeria sp. TM1040]
MRQPHRPVIRFVRLSEIDPQEITAHMSDPLMAEHMPLLEGVEWNAAQTEQFVAAKEACWARDGLGHWGIL
SDDAYIGWGGFQKEDEEWDFGLVLRHSAFGRGIQVAKAALAVAAQDTRIPFVTFLLPPSRRHLGALRRLG
AERLPDVEHAGRPFMKFRLVL
>gi|99081871|ref|YP_614025.1| aminotransferase [Ruegeria sp. TM1040]
MASVIYPTTNFTATEQLCITHGEGIYVYDDTGKQYIEGLAGLWCTSLGYSNTEVVEAITEQLKRLPFQHT
FGGKTHAPVMELAEKLKAMVPVEDAYFFFGNSGSDANDSHYKMLRYYFNAIGKPHKRKIITRERGYHGVT
VAAGSLTSLPANLAHFDAPLEALSILRTDAPHYYTGRQGNETEAQFVERILQNLEDQILAEDPDTIAAMI
IEPITGASGVIVPPEGYYEGLQALLRKHGILIWADEVICGFGRTGADFGCTTMGIKPDLMTFAKQLSSAY
FPISASVIPGWMYKAMVDQTNEVGVFGHGYTYSGHPAACAAALKTLEIYERDKIFDHAAEVGTYLQEQLR
ATFTDHPLVGEVRGKGLIAALELVSNKTTGATIAGGKGGAAAVKACQTEGVILRAVAGNALAFCPPLIIT
KPEVDEMLKRTKAGVDAAYEALRSEGLLNS
>gi|99081872|ref|YP_614026.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MSTCVFIQIRCKPGTTYKVAEDIALHEIHSELYSTSGEYDLLMKLYIPSGEDVGKYINDHLLQIPNIERS
LTTMTFKVF
>gi|99081873|ref|YP_614027.1| imidazoleglycerol-phosphate dehydratase [Ruegeria sp. TM1040]
MRTAQVSRSTAETEISVSVNLDGSGTYDNQTGVGFFDHMLDQLSRHSLIDMTIRAKGDYHIDDHHTVEDT
GIALGQALVQALGDKKGINRYGECHLPMDDAQVRAALDLSARPFLVWNVDLPTQKIGSFDTELVREFFQA
LATHGGITLHIDQIHGVNSHHIAEAAFKAVARALRTAVEVDPRKADAVPSTKGAL
>gi|99081874|ref|YP_614028.1| imidazole glycerol phosphate synthase subunit HisH [Ruegeria sp. TM1040]
MLTAIIDYESGNLHSAEKAFQRMATEVGAGDVVVTSDADVVARADRLVLPGDGAFPACAAELRGHKGIYD
AMVEAVEVKGRPFLGICVGMQLMATTGHEYEDTPGLGWVDGDVVKITPAEAHLKVPHMGWNDLVINHPHP
VFDGISTGDHCYFVHSYHFRVANPNERLAHVDYAGDVTAVIGRDTMLGMQFHPEKSQHVGLKMIGNFLTW
KP
>gi|99081875|ref|YP_614029.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MDRLTTLIDRFRMRVVLAARGAGNLCVMQPEAGRQILVFTPEGWVEDTGAEGVGLALRVDWDGAHNPLVA
ALPQRVEVDLAEAPALASVLALLRQEREAHRCGAQSVVSSLGQVLMVRLLRHLIEAGTAAPGLLAGLADP
RLARAIVAMHDAPGRSWTTSDLAQEAGLSLSRFSELFSAQMNETPMGYLRRWRLTLARQDLIRGDRVEAV
ARRYAYDSPEGFARAFRKFYGVAPVSLRQSTAA
>gi|99081876|ref|YP_614030.1| redoxin [Ruegeria sp. TM1040]
MLIPRQKTPDLTLPLLGGGQFDLASEASERGTVICFYRGLHCPICANYLKEFEKRVADFAERGVKTIAIS
SDGEERTRQMAEKIEAENLRFAYDLPLSVAKDWGLYISTSRGKTSIGIEEPALFAEPGLFMVTPEQTLYY
GSVQTMPFVRPHFSELVAALDFAIANSYPARGEYTGAV
>gi|99081877|ref|YP_614031.1| hypothetical protein TM1040_2037 [Ruegeria sp. TM1040]
MYLRFEKFSHRDGQHRYLVLSLTPTLFGDWCVIQSTGPIGQPGGQERRNYCPTLGEAETLFESTRERQVK
RGFVPIPVQMGLF
>gi|99081878|ref|YP_614032.1| hypothetical protein TM1040_2038 [Ruegeria sp. TM1040]
MKQILASIALIVGMSTAAFAADPIEGTWKTQPDDGSYAHIAMKPCGAALCGTIARTFNDGGEYSSPNLGK
TLVMDMVPQGGGAYEGKVWRPSNDKIYIGKMDLNGNSLRLRGCVAGGLICSKQTWTRVK
>gi|99081879|ref|YP_614033.1| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Ruegeria sp. TM1040]
MILYPAIDLKDGQAVRLLHGDMDKTTVFNDNPAAQALEFVAAGCEWLHLVDLNGAFAGEPVNAAPVEEIL
RQCKVPAQLGGGIRDMATIERWLDKGLARVILGTVAVENPDLVREAARAFPGKVAVGIDARNGKVATKGW
AEETDVEVTDLAKSFEDAGVAAIIYTDIMRDGAMKGPNIDATAALANAVSIPVIASGGVSSLEDLHALKS
CGAALNGAISGRALYDGAIDLAEALAVLKG
>gi|99081880|ref|YP_614034.1| hypothetical protein TM1040_2040 [Ruegeria sp. TM1040]
MPQSSPQSKVISCPLPKTSTLWQRVQPQDFIDGYAVESALSPREAMEIGLSMPGWASALLALRNRLVAPL
GLKTEASDTGEGAIFPVTHEDESEIILGTDDSHLDFRICIRREAGRIHMATWVHRNNLLGRAYLVAVMPF
HILIVRDSMRRIARASAPLAPVS
>gi|99081881|ref|YP_614035.1| imidazole glycerol phosphate synthase subunit HisF [Ruegeria sp. TM1040]
MLKTRLIPCLDVADGRVVKGVNFVGLRDAGDPVEAARAYDAAGADEICFLDIHATHENRGTMFDMVRRTA
EQCFVPLTVGGGVRTKDDVRALLLAGADKVSFNSAAVANPDVIAEAADQFGSQCIVCAIDAKSVAPGKWE
IFTHGGRRETGIDAVEFARLVTAKGAGEILLTSMDRDGTKSGFNLEMTRAISDAVNVPVIASGGVGTLDH
LVDGVTKGGASAVLAASIFHFGEYTVQEAKEHMIANGIPMRLQ
>gi|99081882|ref|YP_614036.1| phosphoribosyl-ATP pyrophosphatase [Ruegeria sp. TM1040]
MTLLHDLEQTILSRKGTDPDTSWTAKLLSKGPEKCAEKFGEEAIEAIIEAVKDDKAKLASEGADVLYHFL
VMLAARDVALDDVLTVLAERQGLSGLAEKAARPKG
>gi|99081883|ref|YP_614037.1| hypothetical protein TM1040_2043 [Ruegeria sp. TM1040]
MARLKIDNRTARSLWLQLHGLAQTPTGPLDVLGLIEQLGFVQLDTIQVVSRAHHHILWSRNQNYREPMLD
PLLRTHRQVFEHFTHDASVLPMAFLPMWQRQFARKKHQVSRSNWFGKHLDPELISDVLRRITEDGPLSTK
DFETRRADRTAMWTRPPHKMVLDYLWYAGELATSHREGFTKYYDLAERVYPQDVPQLSDQAQVQGLCHAA
LDRIGFGTLGQIRKFWEACAVEEVARWAEEAAPDLIEAEVEGADGSWSNVLACSDIETRIAALSSPTSRL
RILNPFDPAIRDRKRLARLFGFDYTVEMFVPAAKRQWGYYIYPLLEGSRLVGRAEIKGDRSKGTLTLSKL
WMEHPHLKTPKRLQKLDAELGRLARLAGLQRVIWAVE
>gi|99081884|ref|YP_614038.1| 7-cyano-7-deazaguanine reductase [Ruegeria sp. TM1040]
MSEDIYQNLKQLGGETRIPASPEEAELERVANPQADVAYNVRFTAPEFTSLCPMTGQPDFAHLVIDYVPG
PWLVESKSLKLFLTSFRNHGAFHEDCTISIARRLVDFLDPQWLRIGGYWYPRGGIPIDVFWQSGTIPEGV
WIPDQGVPPYRGRG
>gi|99081885|ref|YP_614039.1| radical SAM family protein [Ruegeria sp. TM1040]
MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDYRCSWCDSLHAVDSAHRHSWAAMETEAVWQEVRRLSG
DQPLTVSLSGGNPAIQDFGPLIARGKAAGYRFACETQGSIPRPWFSDLETLVLSPKPPSSGEDVDWGAFI
ACRKIGAGARQQVMKIVIFDEADYLWAREVHRRHSDLPLYLQPGNPEVDPETPVDLNAQAERLRWLTERA
MGERWFAPRILPQLHVLIWGNKRGV
>gi|99081886|ref|YP_614040.1| putative 6-pyruvoyl tetrahydropterin synthase [Ruegeria sp. TM1040]
MFRIRKEFHFSASHQLSHLPLDHQCARLHGHNYIVVVELAAESLNADGFVRDYHDLKPLKTYIDDHFDHR
HLNDVMDSPSTAENMARHFYEWCAARWPETSAVLVSETPKTWAEYRP
>gi|99081887|ref|YP_614041.1| ExsB [Ruegeria sp. TM1040]
MKTLVICSGGLDSVSLAHITSQKYQLTRLVSFDYGQRHRKELDFARAAATRLGVPFHLIDMRSIGGALSG
SALTDDIDVPDGHYAEDTMRITVVPNRNAIMLAIGFGVAAAQGDEAVATAVHGGDHFIYPDCRPGFTRAF
ETMQRAALDGYADVRLHTPFVEQSKADIVRAGAAHNTPFAETWSCYKGGDIHCGRCGTCVERREAFHLAE
VADPTVYADPDYWSAAIAGREAE
>gi|99081888|ref|YP_614042.1| hypothetical protein TM1040_2048 [Ruegeria sp. TM1040]
MAGLISETAEFARALSLGALSTRNDAPANARKKWSAGTVSCVIMREVELGDWGRIMRASSYGGTQAHPLP
FPIYTEVIQ
>gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040]
MNKKSNKKPAWVVEKEKAKKAAASETVWLFGLHAVRDALLNPKREKLRLVVTLNAQNKLEDAIATSGITP
EVVDPRKFSVPIDPGSVHQGAALEVKPLNWGGLEDNCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGAS
AVIGTRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEAVAGRTKE
PIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYASLKG
>gi|99081890|ref|YP_614044.1| hypothetical protein TM1040_2050 [Ruegeria sp. TM1040]
MQSAFVPDATLHALVCGTCGAPLKAQKQRPLSDHKGAKLPNASTLQPHGRDDKAAKVKKPKPVKTGKPGK
SGKSGDWSTLAHELASAKLMKKRKKKKKSSWKMVFDVIEDIFD
>gi|99081891|ref|YP_614045.1| hypothetical protein TM1040_2051 [Ruegeria sp. TM1040]
MPTHPLTLALRSASLAVGLALMVALVPVSKAAAGPIYIAVQDGYAMGGYDPVSFHEAEAPLRGHQDHALM
WKGAVWLFHSAQNRSRFEADPRAFAPRFGGHCAYGLSRGHASVGDPETWEIVDGQLFLFNSARGRSLWQE
DRQQMLKAAQASWPEALRAQ
>gi|99081892|ref|YP_614046.1| CoA-binding [Ruegeria sp. TM1040]
MYSDTLLKDVLRRTHSIAVVGVSTNPVRPSYYVARYLSLKGYRVIPVNPGHAGKELFGETIRATLSDIDA
PVDMVDIFRRPEAVPEIVDEALAVFPALQTIWMQIGVEHAEAAAKAEARGLTVIQNRCPKIEYQRLFGEL
RQGGFATGIISSKL
>gi|99081893|ref|YP_614047.1| 3-dehydroquinate dehydratase [Ruegeria sp. TM1040]
MSATPMSDDPTSLAPMQLTYVMTTERGATDRLLTALAEQLASKGIRTAGIVQTNTECYDNKLCDMDVRVL
PEGETIRISQSLGEGARGCRLNPDALERAVGLVTSSLSLSPAPQVLLVNKFGKHEADGRGMRPIIAEALA
MGVPVVCGVNRMNVEAFQNFAEGLCEEASPDLDALVAWVERAIAHPA
>gi|99081894|ref|YP_614048.1| thiamine biosynthesis protein ThiC [Ruegeria sp. TM1040]
MNTPTRHPTPNVTTGALPASRKIYVAGEMHEGIRVPMREIATHPTAGEAPLPVYDSSGPYTDPDVSTDIR
EGLAPLRAAWIKARCDVEAYSGRDVTAADNGFVEGDRLVPEFPVKPAPLRGRQRAAPTQLAYARAGIITP
EMEFVAIRENQLRDLSPCHCARDGEDFGANIPDYVTPEFVRAEIAAGRAIIPANINHPELEPMIIGRNFK
VKINANMGTSSVTSSMEEEVDKLVWAIRWGADTVMDLSTGRNIHNTREWIIRNSPVPIGTVPIYQALEKV
NGIAEDLTWEVFRDTLIEQAEQGVDYFTIHAGVRLHMVPMTVERVTGIVSRGGSIMAKWCLHHHRESFLY
EHFEEICDICRQYDVSFSLGDGLRPGSIADANDAAQFAELETLGELTKIAWAKDCQVMIEGPGHVAMHKI
KENMDKQLECCHEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGCAMLCYVTPKEHLGLPDRDDVKTG
VITYKIAAHAADLAKGLPGAQRRDDALSRARFEFRWEDQFNLSLDPETAQSFHDETLPKEAHKVAHFCSM
CGPKFCSMRISHDIRAEAQKEGFEAMAAKFREGGELYVPLKDTAPEEA
>gi|99081895|ref|YP_614049.1| LamB/YcsF family protein [Ruegeria sp. TM1040]
MTSTVDLNADMGESFGPWVMGRDAEVLDVVTSANVACGVHAGDWDVMAQTMADAVARGVGIGAHPGFPDL
QGFGRRKLHLPHESLGNLVQYQVGAAQAMAEAAGGKVRHLKLHGAMANMAAADHDMARACYEAALRVAPE
IIIMVMAGTQQQAAAEALGCNVACEIFADRAYNADASLVDRSLPGAVIHDAERAGARVAQMVQDGAILAE
DGSRIPARIDTICLHGDTPEALEIARAVRRQLEDAGVTLQQFDGKPL
>gi|99081896|ref|YP_614050.1| allophanate hydrolase subunit 2 [Ruegeria sp. TM1040]
MSVRLIVHRAGPGLSIQDLGRSGYLAFGLSRGGAADRLALYEGAALLGQEPSAAAIEMAGLGGTFEVTTD
TRIALTGAPMKATLQDGSELRWNASHLLAAGMQLSIGAVRAGSYGYLHVGGGIANALQLGARSAHLASGL
GARLRDGAELPLGDDAGGAVNMTLTPEPRLDGGTLRMVPSLQTSLFGAAEVARFQEVRFHRDSRANRMGV
RLLPEGQGFALEGGLSVLSEVIAPGDIQVTGDGTPYVLMSECQTTGGYPRIGSVLPCDMPRVAQAQAGAA
FRFEQVTLEEAVEIERRARAERERLPSRLTPLVRDPARMRDLLSYQLVSGVTAGRDLDEAL
>gi|99081897|ref|YP_614051.1| allophanate hydrolase subunit 1 [Ruegeria sp. TM1040]
MTKSPIRVEPPVGDTQWPEVATAGFDGVVVRFADRLSEPANRAALAFRAAVDVAGWAAVEETSTSLVSTY
LRFDPLGTSHAEMIAQVAALLETRDWYAAALPQGRKLWRVPTVFGTELAPQLEEAAARAGLSAGEAVTQI
SQTRLRVQTIGFAPGQPYLGELPPAFDIPRQTELTPEVPEGAVVVAIRQIVLFSVTTPTGWRHIGQTRFR
LFRPDAPEPFVLRPGDEVLFEPISPERYAALERAGVDGGATSEVLT
>gi|99081898|ref|YP_614052.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MSRRHYNLPPLTTLTAFEAAARHLSFKDAAKELSVTPGAVSHQVKALEGELGVALFRRKHRGVDLTVPGQ
TLYDTLAGSLTRISQSLQSIRDQSSAGVVTVGSTTAMAAMWLSPAVIRFWRDHPEININQVVRDRAFTTS
AELDLYIWYGREKDQRLDQFPLYRDRLLPVAAPERAAELAGADLDVLASQRLIHLEGDDISWTKWHDWFR
QLGYSGPVASGIRVNNYSIALQAARDGAGLTLGWERLISPLITQGDLAIIGPHVLPAPERFFLVSKPDEE
LTPSARLLRDWIIEEASQITDEPC
>gi|99081899|ref|YP_614053.1| Rieske (2Fe-2S) region [Ruegeria sp. TM1040]
MTKPVSLQSVLTSVNRANGLPNAHYIDPVVFAEERAAVLFANWSGVGFGKDIPNPGDAKPVDFLGVPLLL
VRDHDGGVHVYQNTCRHRGMILVEEAKNIRGTIRCPYHSWCYSLKGKLRAAPHVGGVGQNTHADVKMDEL
SLVSFRAHVWQDVIFVNIDGKAAPFEEVHADLLQRWQEFDRPLHHGGPESSLKLEVKTNWKLAVENYCES
YHLPWVHPGLNSYSRLEDHYNIEKQGKYSGQGTLVYRQLRGAEDEVFPDFEGLSDKWETGGEYVALYPNV
LLGVQRDHSFAIVLEPKGCEETVEHIELYYAKSSAETPELDPLRHQNAQLWKTVFEEDVFVVEGMQKGRH
GPMFDGGRFSPAMDGPTHNFHHWVATQIEAARAS
>gi|99081900|ref|YP_614054.1| hypothetical protein TM1040_2060 [Ruegeria sp. TM1040]
MSAVELQISPQEAAALHHAILAAHAKHDLAQLVELYAIAADGKEAEGDTDAACFFLTQAFVFALEAGVAR
AQELNHRLVAYGRAWPLEQ
>gi|99081901|ref|YP_614055.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MPELSLRHLRYFAVLSRALQFRRAARQLGISQPSLSLQIAALEEIVGAPLLERRRNGLILTAAGRDVAAR
AERILADCELLVNASATRRAGLSGTLRLGSSPTIGPYILPQVLKRLHETYPDFRLIIRDGPSRDLLEDLV
AGKHDLILTQAPIQRDDIRFHPLFREPLYLVVPRGHPLATAGVARRRDLGQEQFLSLNPAYALRRQVEGL
AQTVGARMQDDIDGTSLDAIRQMVALGMGVTLMPQSYTRSEIDNRKDDVCVVTLKPGLERHIGLAWRVSS
GNPASFEELAEAIAVMGKTDPKAAIT
>gi|99081902|ref|YP_614056.1| hypothetical protein TM1040_2062 [Ruegeria sp. TM1040]
MCPTKWRFPMKDSPKVKAFSLEVRLTKLRLKHQTLKARIAREMKRPSPCSATLQLLKRQRLRLKDEIVSC
ANRLRALGRRNLASGPMLSRPTS
>gi|99081903|ref|YP_614057.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MRTEAKAVVIGGGVIGCSILYHLTKLGWSDVVLLERDELTSGSTWHAAANIHGLHDSTNISRIQHYTMTL
YKELEQETGQGCGVFQPGSLYLAQTEDRAHQLRLQAAKAKLYGMNFYEISIEEAQELNPLVNFDGIRCVM
YEPDGGNVDPSGVTQAYATGARQRGAEIHRFTPVTATEAQPDGTWIVKTPKGDIHTDWVVNAAGLWGREV
AKLAGLELPLQPTEHQYFVTETIPEIAGMERRLPSVSDRDGEYYLRQEGQGLLVGAYEKGMKFWAEDGTP
LDFAHDLFPDDLERIEENMMNAIERVPVVGDAGIKRVINGPMIWSPDANVLFGPVPELSGYFCCNGIIPG
FSQSGGMGLMAAQWMIEGETQFDMFNWDVARFGDWATKEFTKARVEDQYAHRFAIHFPNEERSAGRPART
RPIYEMQREMGAVFGLNAGWEHPLWFADQPGAEDTNGFTRQNWWGPVGEECKMLRARAGIIDISNFAKYR
CKGPDAEDWLNAVFANRMPKAVGRSCLTPLISKRGGIAGDFTVTRLAEDEFWVIGSGMAERYHKRFFGAV
PLPEGTSFESLTQEVCGFNVAGPKSREMLQRMTNEPLDTASFPFMRSKRLMLAGINVVALRVSFTGDLGW
ELHCATEDQEKLYIALIEAGREFGAGPVGSRALMSLRVEKGYGSWSREYSPEYFPHEVGFQPLCKMDKDF
LNKSAAETAMGTPAREELVLLHLTAEDVEASDADATGGEPIFKDGRGIGRVTSGTYGYTVGMSLALGYVK
DAKPGDTVEVMVLGRAHRAVILAEPPFDPKGERLRA
>gi|99081904|ref|YP_614058.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MSEILVLGGGMVGISTALELQARGHAVTVVDRKAPGQETSYGNAGLIQAEAAEPYAMPRALPEILGILSG
RSNDVIWSLRGVLSQLPALWQYYRYSHPHRHLALSQPNAHLIRTACADHDRWITAAAAQDLIAQDGYLSV
FQDAAMFDSLASDLERLRQSYGVEATAMSGPQLCKMEPLYQRPPVGGIHWRDVWSCAAPGELVARYAALF
QSRGGEICTGDASTLRPEGSAWALMSEAGRLHGEHAVIALGPWTPPILAQLGYRVRMIMKHGAHRMYPTG
PKLRRPVHDAQHGIVLSSMKGGLRMTCGVALEASGRVPDARQLDRGAKGLAAYMDLGTAEGGPIWHGTRP
FLPDMLPMVGAAPRHDRLWFHFGHGHQGFTLGPTTARHLGALIDGGDSAGIAALLPQNRPAVLS
>gi|99081905|ref|YP_614059.1| endoribonuclease L-PSP [Ruegeria sp. TM1040]
MSDITYAHTTQRMSQIVTHGDTIYLAGQVGTAGASVTQQTQDCLDKIDALLAEAGSSKERILQATIWLAD
MSDFAEMNAVWDAWVPEGRAPARACGESKLATPDFTVEILIIAAKG
>gi|99081906|ref|YP_614060.1| histone deacetylase superfamily protein [Ruegeria sp. TM1040]
MKAIYDPRQRAHNPSQFMAFGVMKPNPEQPERTEILRSGAEAAGCTFTAPEDAGLGPIAALHSPEYLTFL
QTIHARWSEIEGAGPEVISHIKPGDRRDSYPRSALGQAGYHQADTSCPINADTWGSAYWSAQTAITAADL
IAKGERAAYALCRPPGHHAFGDMAGGFCFLNNSGIAAQLLRDRGLRPAILDVDVHHGNGTQGLFYDRDDV
LTLSIHADPADFYPFFWGHSSERGEGRGRGYNLNLPLPRGTEDAPFLDALDTCLDRVRAFGCDVLVIALG
LDASVDDPFQGFQVTGDGFSRIGEAIARAGLPTLFVQEGGYISDSLGHNLTRVLGGFTSAAR
>gi|99081907|ref|YP_614061.1| TRAP dicarboxylate transporter- DctM subunit [Ruegeria sp. TM1040]
MIILGSLFILCVLLLIGVSVPLAFGGVLVFIGVFGGHDVTGFLPTGHWKMNSIVLLAIPLFILAGAIMER
GRIAAPLVSVAELLVGRIHGGLSAAAVFASGIFGSISGSAAATLTCIGSIMMPHLKAANYPRGPAAALIV
AACPLGLLIPPSSSQILYAWVAQQSVLKCFLSTVVPGLILITLLCMVNYVLMRKADLKLLERPASYPQEF
VRRGGRAFPALLMPIIILGGIYGGIMTPTEAAGVAVIYAIPVGLFIYRGLTPQNIWPTLRYAGTTIGVVM
LMVFVVVIVSRFLVFEDIPGMAKDLIFSISDNPIVILLMVNLVMILIGMLMDDISGLLLSAPLLLPIVQS
VGMDPVHFAAVLGVNLGMANITPPTAPLLYLGAKVTDTPVSEMLKPTFIMILFAWLPTLLITTFVPEVAL
WLPNFVFG
>gi|99081908|ref|YP_614062.1| hypothetical protein TM1040_2068 [Ruegeria sp. TM1040]
MKDLSQDLPAGLAKLVRILLRLQTIYVCFGCIAMALTFFFVVVFRYGFNADLFAYEEWLLIICFWLYFIA
AAIGTWEGAHVNADLLDFVILDPVKRRARAILITAIELLVTLVLFYWSTVMMIEEIGDYPRYQTTIALQI
PFFVPRAAIFFGFGLMGLYSALRFFVFLKLPATRFAVSADSDPAQGA
>gi|99081909|ref|YP_614063.1| TRAP dicarboxylate transporter- DctP subunit [Ruegeria sp. TM1040]
MRKSLLTTAATAAAFTLSLGAADAADMRLKLAGVVPVEHFGNDILKQIEADIEGADVGLSVTLFEAGQLG
SGEELFEDAARGNVDLVHSVIYAHRDPVLEINSLPYLVSSFDEMEDIYLNKDSAFNEIFAERLEGLGLKL
LANAPEGFIGVVAENLPENATSVGDKDVNIRVWSSQVIKNTVEAMGFNATTMNWGEVFPAIQSGVVDGAI
CCTAQLAYSAFATSDVGKYFIPYGAVVENTTYYASMETWEEMNDEQRAAVQAAFDKAAQTYFAEAKANEA
GYIDKLKETGYEVVEVSDAERSAIAETVRKDVWPGIAEIVGQDVIDRLMTAKN
>gi|99081910|ref|YP_614064.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MTPPDQVHPRPHIDPERLTREMNWNLLRTFVVLAESGSITEAAERLRLKQPSVSVALKKLEDQLGQHLID
RSPGHFTLTKAGQMLYREAVNINGSILRLATLMRTVTPEISGHVRIAVASHVLCPLFDSVIGDFYAAHPK
ASLAIDVITSGDAITAVAAKRVSFALALVREQDPNLRYLPVYRETFGLFCGPRHPLFGRSDLTLEDLKGH
AAVVFDNDRLQDALQDVTLLRARAALAPEITGVSENLEEVRRMIMAGLGIGPLPKHVVARDIEDGLLWQV
PPFEDLPEVDVYLIWNPTTVRNRAEETLLTTLIERLETVPFAERSYA
>gi|99081911|ref|YP_614065.1| FMN adenylyltransferase / riboflavin kinase [Ruegeria sp. TM1040]
MRIIRDYQFVEEQDRGATVAIGNFDGVHRGHRSVIDLARKAAPDAPLGVMTFEPHPREFFAPNAPPFRLM
SAEARAHRLEKIGVEKLYQLNFNHALSSLTPEEFARNVIAEGLGLSHVVVGADFCFGKGRAGTVEDLQRF
GQDMGFGVTIAPLMGYSEHTVSSTAIRTALSEGRPRDAAAMLGHWHRIEGEVIGGEQRGRTLGFPTANQS
IDGLHPPAFGVYAVLVDVLDGPHKGSYHGAASVGVRPMFDGEQPNIETYLFDFKGNLYGAHLSVGLVDYL
RAELKFDGLEPFIAQMQADCDQARAILTSL
>gi|99081912|ref|YP_614066.1| hypothetical protein TM1040_2072 [Ruegeria sp. TM1040]
MTNQIDRNGLTPKFWEKKPLKTLSQREWEALCDGCGKCCLNKLEDEDSGEVALTRVACRLLDDQSCQCAH
YETRHSFIPECIVLKPENLDTHAYWMPQTCAYRRLWEGKSLPDWHPLVTGDPDSVHRAGVSVRGMTVSEF
DTPLEEWEDYIIEEPV
>gi|99081913|ref|YP_614067.1| alpha/beta hydrolase fold [Ruegeria sp. TM1040]
MSLDLSALPQEVYHRKFGTGARHLVAVHCSLAHSGAWRGLVGALGEDRVSCTAFDMLSHGKSPDWDGQGL
LQRRNAEAGLCLLEAEVAETGGPVDLIGHSFGATVALAMAEMRPDLVRSLVMIEPVLFAAAKVQNPDALE
QMRSDHMAVRSPYAAGDVEYATRLFNRAWGTGHPKWPDLPEHARAAMVRSFPAVMDCDSQVYDDAAGLLA
PGALEALEMPVLVMQGGATQPIMTAVTDALSARMPEAQISVIKGAGHMVPVTHPEAVAEVLRAFWSQR
>gi|99081914|ref|YP_614068.1| DSBA oxidoreductase [Ruegeria sp. TM1040]
MTASSLSIDYYFSTLSPFSYLAGQRLEEIAARHGAAVTYKPFDIMALFARTGGTPPKDRHPARQAYRLIE
MERQSKRTGLPLNLKPAHWPTNAAPSSYAIIAAQKAGGGDLGALVHGTLRAVWAEERDIAQDDVVKSLLE
SAGFDPALADSGLLTGAEIYAQNLEDAVNADVFGAPFYVTSDGAKFWGQDRLVDLDEHLAGQGA
>gi|99081915|ref|YP_614069.1| ribose-phosphate pyrophosphokinase [Ruegeria sp. TM1040]
MPTLNEPKLISGNANLPLAKSISRRMSMHRGVDQDLVNARVERFNDGEIFVEVYENVRGEDMFIIQPTSN
PANDNLMELLIIADALRRSSAQRITAVIPYFGYARQDRRTKARTPISAKMVANMLTGAGIERVLTMDLHA
AQIQGFFDIPVDNLYASPIFALDVKAQFKDQMDDLMVVSPDVGGVARARELAKRINAPLSIVDKRREKAG
EIAEMTVIGDVKDKICLIVDDICDTAGTLCKAAQILLDNGAKEVHAYISHGVMSGPAVERVTNSVMKSLV
LTDSIQPTQPILDAPNIRIVPTAPLFTQAILNIWHGTSVSSLFEDKTLIPIYESLYNSQS
>gi|99081916|ref|YP_614070.1| dTDP-4-dehydrorhamnose reductase [Ruegeria sp. TM1040]
MNASKPNTPLELTVLIIGAYGLIGCGVAQRLERDGHRIIGLGRDTDTGKRVIPTIDWLPADLRSLTKASA
WQPFLEGINAVVNCSGALQDGPEDDLEVVHHHAVAALAEACATSQVKLVQISAVGASEDAATPFLASKGR
GDAAVQRAGKDHHIFRPGLVLARHSYGGTTMLRMLAAFPLVQPLAVPDAKIQTVALDDVAKAVSAALAGD
IPNGFVGDLVETETHSLRNVVASIRAWLGFAPTKHEFLIPSLFTISMSKIADGLGRLGWRSPLRSTAIKV
LDDGVTGVPTDLSRFGLSPVRSLSQTLASMPARAEDRLFARMALLTPIIIATLISFWFLSGVIGLLQIGE
AALVLENVGWTHALAATSVLFWSIVDLAIAAAFAYRPYAKKACWCAVGVSLFYLGASTVFVPHLWLDPLG
PMIKVLPSIALALVARIALETR
>gi|99081917|ref|YP_614071.1| hypothetical protein TM1040_2077 [Ruegeria sp. TM1040]
MIVWIDVVRLLHVLGACVLIGTGAGIAFFMVMAHRTRDAASIAHTAHIVVIADMLFTATAAVAQPITGFV
LARYYGWPLWEGWIAVSLALYVFIGLFWLPVVSIQIKMRDEARTSAQTATPLSARYMLLYRIWFACGVPA
FLAIVALLWLMVVRPAI
>gi|99081918|ref|YP_614072.1| hypothetical protein TM1040_2078 [Ruegeria sp. TM1040]
MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRLTELSIARDWR
VWLRAGFVTAGISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERPSPLRSLLLGLGFIGVMLVVK
PGFGVSFGLFYALAAGCFYGAYLAMTRTVAGSYRPRLLLMSQLLIGTLLLTPMGLSVEMPTLDWTIFTLL
SLSALGSAVGNYILVVVNKTAEASLIAPLVYSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLA
HQRATPL
>gi|99081919|ref|YP_614073.1| hypothetical protein TM1040_2079 [Ruegeria sp. TM1040]
MKACFPFATAVIAATSLADVARATDMAVVTSDDCILTIGRSADVSPGFALPVRFIDIERPEPAADGAKSA
LTPIATALAVKLVETAFESGVSYLNKKANPDPKTAERMIGVDMFRVANEMEVLAPTKDDPEKTKTVRPVF
LNPALRCLTVVTASAPIQTEAGAIRTADLLQRIAQDQETVEAWTQETETNGLSDETAGYRLAKAGIAVLE
GGSLGTILELRLEVTADGSAFRYVPVYFDVMNFATEGKEKRDIGVTIKVSSLGTSSDNTVALASFHANQL
SAVTGSGGNVGVSVQSSKAFGGFGPTTVEAVLGRGAWSKFAMPSAALPQSIQDLLNLGSLDGLQGNAEFT
PFVNEVQRLQTAPFTYTPVNISVSFEESTEASRVVTFLDDFVKDNDALKDQLEKSTLKALGLQSDADALA
ELVALKQKEIDAAEAHLAVFKADPDNLLDAKKEWFDKVVADREQQIAEKKAELAALQFGQDTYVPTSSLD
LTEPDVD
>gi|99081920|ref|YP_614074.1| heavy metal translocating P-type ATPase [Ruegeria sp. TM1040]
MTQPITARLSIEGMTCAGCVGRVDRTLAALPGLRDVSVNLANETAQITAESPEALQQADSALRDLGKPAR
HQSVQLSIEGMTCGGCVGRVERAIKALPGVVSANVNLAAESAQVEILQGVVTPSEVAAASTQAGYRARPA
EATDTEDRAARKDREARDLRRQVMIAAALTLPVFLLEMGGHVVPAVHHWIAQTIGMQTSWVMQALLTTAV
LFLPGRAFFTLGLPALRKGAPDMNSLVALGAGAAWIYSLVATFAPALLPADVRAVYFEAAAMIVTLILIG
RWLEARAKGRTGAAIQALVGLQARHARRLTKDGQPEDVEVEDLAPGDRILVRPGERIPTDGTVLEGTAHV
DESMISGEPIPVEKTEGAPVTGGTVNGEGSLTVAVTRTGAETTLAQIIRMVEDAQGAKLPIQSLVDKVTL
RFVPVVMVLAVLTVGVWLLVGPEPRLTNALVAGVSVLIIACPCAMGLATPTSIMVGTGRAAEQGVLFRKG
DALQSLHEVDIIAFDKTGTLTEGRPSLVALRPTEGFERAEVLASVATVEARSEHPIARALVTAAQDEGLS
LGEVSNFQSLTARGVTAEVAGREIRIGSARLMSEAGISVDALASEALERAGRGESVLYAAIGGQLAALLA
VADPIKPTSAEAIKALRAMGKDVAMISGDAPATAEAIARDLGISHVVAGVAPEGKVSALRDLASRGRKLG
FVGDGINDAPALAQADVGIAIGTGTDVAIEAGDVVLMSGDLRGVATAIQISHKTLVNIRQNLGWAFVYNA
ALIPLAAGALYPAFGILLSPVFAAGAMALSSVSVLTNALRLRRA
>gi|99081921|ref|YP_614075.1| MerR family transcriptional regulator [Ruegeria sp. TM1040]
MLKIGDLAQRTGVSADALRLYERRGLIRSERMANGYRVFDPEMERLVKLIRLGQSIGFTLREMEHVIATL
SSRDLSAAQTATLIQDRIDAVDVKLAELTELRRLLVDLQDQACPLRG
>gi|99081922|ref|YP_614076.1| hypothetical protein TM1040_2082 [Ruegeria sp. TM1040]
MFCDGMNKKVYLASAWYDLAMSVPFALPITLSLTWGYVMIPLNAALGFGVLEPLETHGAMFANFYGSIVM
LWALLRLYLADVRLAVVDGTGRFLYSIAMINALMHGATPLLWFFLTVEITFCVLQLAGAVARYRRQAPHR
GAETPV
>gi|99081923|ref|YP_614077.1| hypothetical protein TM1040_2083 [Ruegeria sp. TM1040]
MAKREPLTFWQWHFSKTKRFTILLFGANAAGPFCLWLLLSGAAATSGDASVARLQMSLVLWVVLLAVLYW
LFRKERQITPAKISQGDKIRFRSIPSDLDADHILHPIEPATNGMPLTQQKIFSYLVTCGDHFTVYDSAAA
GGKELHLKLCVEDRMQTYVVPVPVDDSWYVSRYA
>gi|99081924|ref|YP_614078.1| hypothetical protein TM1040_2084 [Ruegeria sp. TM1040]
MRNTTFRSQRTGVAQGDVEVFSEFDSGGSMWTGSGGRERRLNVRFDHPFRAIPAVQVTASLMDMHQDTAH
RSELVAENISETGFDVVFRTWSDSRVARVRAAWMAIGDLPFEDDWDVE
>gi|99081925|ref|YP_614079.1| F0F1 ATP synthase subunit epsilon [Ruegeria sp. TM1040]
MADTMQFDLVSPERSLASLQARAVQIPGAEGDMTAMPLHAPTLTTLRPGILKVDAPEGTTEYLVTGGFAQ
ITAEGLSVLAERAIPMDEMTRAHLDELIEEARTMYKTAQEDNSEHGLVEDAAKMLADMEALGTHMSL
>gi|99081926|ref|YP_614080.1| F0F1 ATP synthase subunit beta [Ruegeria sp. TM1040]
MANAKGKVTQIIGAVVDVQFDGELPAILNALTTDNNGKKLVLEVAQHLGENSVRTIAMDATEGLVRGQEV
TDTGAPISIPVGNATLGRILNVVGEPVDEGEPIVAKETRAIHQPAPEFNDQSTESEVLVTGIKVIDLLAP
YAKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGYSVFAGVGERTREGNDLYHEMIESNVIKPDNLEESQ
VALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPT
LATDMGAMQERITSTKNGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLNRAISELGIYPAVDPLDSS
SRLMDPQIVGEEHYKVASDVQQILQRYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFDVAKVF
TGSDGVQVSLEDTIASFKAVVAGEYDHLPEGAFYMVGGIDEVIAKAEKMAADAA
>gi|99081927|ref|YP_614081.1| F0F1 ATP synthase subunit gamma [Ruegeria sp. TM1040]
MPSLKDLKNRISSVKNTRKITKAMQMVAAAKLRRAQEAAEDARPYAERFNAVMAGLAASVGQSDTAPKLL
AGTGSDQVQLLVVMTAERGLCGGFNANIAKLARQKVLDLQAAGKTVKILTVGKKGRDVLKREFGDLFVGH
VDLTEVKRVGYVDAQGIAKDILARFDAGEFDVATIFYSKFQNVVTQIPTAQQIIPAEFDAEGAEATSGVV
DYEPSEEAILADLLPRGVATQIFAGLLENGASEQGARMSAMDNATRNAGEMIDKLTIEYNRSRQAVITNE
LIEIISGAEAL
>gi|99081928|ref|YP_614082.1| F0F1 ATP synthase subunit alpha [Ruegeria sp. TM1040]
MGIQAAEISAILKDQIKNFGQEAEVAEIGRVLSVGDGIARVYGLDNVQAGEMVEFPGGIMGMALNLESDN
VGVVIFGSDRDIKEGDTVKRTNSIVDVPAGPELLGRVVDGLGNPLDGKGPIEAKERKVADVKAPGIIPRK
SVHEPMATGLKSVDAMIPVGRGQRELIIGDRQTGKTAIALDTILNQKSYNDAAGDDDSKKLYCVYVAVGQ
KRSTVAQLVKKLEESGAMEYSIVVAATASDPAPMQFLAPYAATAMAEYFRDSGKHALIIYDDLSKQAVAY
RQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKLNEDFGAGSLTALPIIETQGGDVSAFIPTNVISITDG
QIFLETELFYQGIRPAVNTGLSVSRVGSSAQTDAMSSVAGPVKLSLAQYREMAAFAQFGSDLDAATQQLL
ARGARLTELMKQPQYSPLTNSEIVCIIFAGTNGYLDKVDVKEVGRYEAELLTFLRSKKADFLQWITDEDP
KFKKGEPVEKMKAVLDEFAADFA
>gi|99081929|ref|YP_614083.1| ATP synthase F1, delta subunit [Ruegeria sp. TM1040]
MPGQNRATSRPRMLPARTHINRGQNNIGRVDVSEPASISAGIADRYATAIFEIAAESNALDNLETSINDL
AASLADSEDLRTLITSPLVSREEQAAAISAVADKMGLVDVLRNSLALMAAKRRLFVVPALIDALRARIAE
ARGEVTAEVVSAKALTKTQSEKLAKTLAERVGKKVTINATVDASIIGGLVVKVGSKMIDSSIRSKLNSLQ
NAMKEVG
>gi|99081930|ref|YP_614084.1| hypothetical protein TM1040_2090 [Ruegeria sp. TM1040]
MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARRLMALMPGPQG
VMQWPAGMPNVSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECWRVMGPRGRAIFIVPNRAGLW
ARSDETPFGYGRPYTLTQLENQLRAHQFTIEQHAAALYRLPSSRRFWLKSGAMIERVGRRLPAMMAAGVF
LVEVSKQTHPQKGHMTRARRTNPIRVLEGLSNPIAEPT
>gi|99081931|ref|YP_614085.1| hydroxyacylglutathione hydrolase [Ruegeria sp. TM1040]
MTMPDQTSFPSTVANGLEIVTVPCLADNYAYLVKGPDGVALIDAPEAEPILTALEARDWSLGVIMITHHH
HDHVGGVAALREKFGCPVMGPKAEADKIAAQGVTLDMELEPGFEGGTGAGRCQVLAVPGHTLGHIAFYYP
EAPALFSADSLMVMGCGRLFEGTPAMMWQTMTTLSALPDETLIYSGHEYTESNAGFALSLEPENAALQKR
MDEITKTRQNGQPTVPALLSLEKQTNPFLRAGDPNLKKTLGLEGVEDAEVFAHIRVAKDKF
>gi|99081932|ref|YP_614086.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp. TM1040]
MADDPHNPRQRSTPVPSFSSTLEQAIHAALALANERRHEFATLEHLLLALTEEPDAARVMRACSVNLDEL
RSTLLEFVDEDLANLVTDIDGSEAVPTAAFQRVIQRAAIHVQSSGRTEVTGANVLVAIFAERESDAAFFL
QDQDMTRYDAVNFIAHGVAKDPAYGENRPVTGASESEEEIGGGPSMGSPEGEQKESALAKYCVDLNAKSR
EGDIDPLIGRDSEVERCIQVLCRRRKNNPLLVGDPGVGKTAIAEGLARKVVQGEVPEVLSETTIYSLDMG
ALLAGTRYRGDFEERLKAVVTELEEHPDAVLFIDEIHTVIGAGATSGGAMDASNLLKPALQGGKLRTMGS
TTYKEFRQHFEKDRALSRRFQKIDVNEPSVEDSIAILKGLKPYFEDHHSIKFTSDAIKSAVELSARYIND
RKLPDKAIDVIDEAGAAQHLVAESKRRKTIGVKEIEAVVAKIARIPPKNVSKDDAEVLKDLEASLKRVVF
GQDAAIDALSSAIKLARAGLREPEKPIGNYLFAGPTGVGKTEVAKQLADTLGVELLRFDMSEYMEKHAVS
RLIGAPPGYVGFDQGGLLTDGVDQHPHCVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNVVL
IMTSNAGASELAKSAIGFGRDRREGEDTAAIERTFSPEFRNRLDATISFGPLPKEVILQVVEKFVLQLEA
QLMDRNVSIELTRKAAEWLADKGYDDKMGARPLGRVIQEHIKKPLAEELLFGKLSKGGVVQVGIKDGKLD
LRIEGPGKPRLSGNKPPLLTAE
>gi|99081933|ref|YP_614087.1| hypothetical protein TM1040_2093 [Ruegeria sp. TM1040]
MRGSDGFAPGLSGFGLIALTYIVCHGVTIWVIAPAQRFFLDDVSVIASLAYLPHGVRVLSIWLVGWRAIL
PLIAGAVAANMIFTSSHILDLMQGKMSVSILMSVLSAYAAFEVLRLLGVASYAGGGRRVNWRTLLLTGLL
ASVFNSVCQTLIFSGIIAPDGTLWELASFVVGDMIGQIVLMIALMMIFRALRGPATRA
>gi|99081934|ref|YP_614088.1| hypothetical protein TM1040_2094 [Ruegeria sp. TM1040]
MFDRNMSGLVSGETFLDRLRAIFELRDMLRQMERDIGLESLSPAEKDVFQAAHRLTDVPGQLVVSDQIRQ
HPLTQGIAQATFHRALRSLLELGFLERPEGARAKHYMVRKDLLHD
>gi|99081935|ref|YP_614089.1| hypothetical protein TM1040_2095 [Ruegeria sp. TM1040]
MALKRRTGQRFQGSIWPGFVDAMTGLLLVLMFVLTIFMVVQFVLRETISGQESELDELSTEVRALAEALG
VKEREASQLQARLGALGATLSSTRSDLDAAREQISNQTARISALTQERDAARSDLATARTQISDFEAQVA
ALIAGRESAEAQIADLTAERDALDAARSELLSEQEALNLALAQLREEVDAEAEAARLAAAQTEALQALVE
DLRAEGAAQSERVSALEEALSEEEATRLAEAAAAEALRARLENADAELTAMTLALEEERKKAEDTLTLLA
AAEAARDQLDTELEEALAAIEQAKAQVNDRDELAERLTRVLAQMEVTESTATARVSALEAELERVRNENA
ATRERMTADLETARQEAADTRSRLEAELTRQRAQTVETESQYQAQLRAAQESFDAERRALEDRLATLEAQ
ADTTRRDLEDQLAALRGQAEETRSGLETRLARAEADLAAARAAASSTAEERASVEQRLLIALEALERAQA
AASDQEVLQSRLLAALAQKDDFAQEISEQRTLAEQRADLLAQARAALAEEKQISEDARRETALLNQQVAA
LREQLGGLQSLLDDFKERDAAQGIQLQSLGQDLNTALARAAAEERRRRMLEEQERKRLEAERERLANEAK
DLEQYRSEFFGQLRSVLGNQEGVRIEGDRFVFASEVLFALGSAELSEAGKAEIAKVARILQNVAAAIPDD
INWIIRVDGHTDNQRFVGAGKYADNWELSQGRALSVVRYMIDELGIPPGRLAANGFGEFQPVNPADTPEA
RAQNRRIELKLTER
>gi|99081936|ref|YP_614090.1| hypothetical protein TM1040_2096 [Ruegeria sp. TM1040]
MAHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIVGVLATFWQVM
QLINSVRWIERFAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRSILDSVAERIDEEREITRYIV
NLLIFLGLLGTFYGLATTVPAVVDTIRSLAPQDGEEGVAIFNRLMTGLESQLGGMGVAFASSLLGLAGSL
IVGLLELFAGHGQNRFYRELEEWLSSFTRVSFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKG
RAEVEGKLSRLIDTIEDMNRRQDDVASISGALERVAVGQETLAELMRAHGDVGIDAESRMRLRSIDVQML
RILEEISAGRQESLSELRKDIDLLVKAFAGPRGMDRAARKES
>gi|99081937|ref|YP_614091.1| ChaC-like protein [Ruegeria sp. TM1040]
MTMWVFGYGSLLWNPEFPVARREVATLHGYARSFCMRSIHHRGSEEAPGLVLALDEQDEAHCKGLALSVE
AGHEEATLTALRERELISSAYVERFLDVDLESGERVNAVVYVIDPHHVQYCHLELEEQAQIIAHAVGGRG
PNSEYLFNTAGHLDEIGLSDPDLNWLTERVRQILS
>gi|99081938|ref|YP_614092.1| hypothetical protein TM1040_2098 [Ruegeria sp. TM1040]
MKRGLKILFGLCVVWSLYWAVAAWGLRQSVAAWFEEQAARGWQVEVKEITAGDGLGGYPWRHVTQITQPA
LADPGTGAAWRADWLELQSPAIWPGHQSLRFADGDQRLSYYDQTAVITTQGLQADLFLAPGLALELEELG
LTSGSWRIGDDAEATLSADDLSLRMVQGSVAESYEISAEARAFRPGKALRRLLRAAPKLPQAFETLSLAM
DVTFDKAWDLSVLEHRRPQPRQIDLALLEAHWGEMRLKMSGALEVDEAGIPTGEVALQVEAWAEFLALAE
DSGLLSPTLREQASRVVAVMARASGNPEDLDITLGFRNGNITIGPIPLGPAPRLIIR
>gi|99081939|ref|YP_614093.1| extensin-like [Ruegeria sp. TM1040]
MIAWARHTLAGLALACVAFTGMPVVAAPETTLRPPAVRGGATPEAARVSAMPTAAILPQSAPALRPQLRP
VSAQILAAAARPTEQIPVAPDGTLRPMMRTPEFTQQVLFGRAKRRRGAVCGDIDIQGEEAGNIAGTLQGC
GARDAVRVRSVSGVGLSRPALMTCETAKALNKWVSRDVETAFGRSNRVVELRVAAGYSCRTRNNRPGAKI
SEHGRGRAIDISGFKLEDGTVVSVLRGWADASTSRALRRIWKAACGPFRTVLGPEADIYHRDHFHLDVAR
HRSGRYCR
>gi|99081940|ref|YP_614094.1| cyclohexadienyl dehydrogenase [Ruegeria sp. TM1040]
MSEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRVCDTASAAVEG
ADLVVLCVPVGAMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPEGVHFVPSHPLAGTEHSGPES
GFAELFDNRWCLLVPVDGSAPEAVARLRALWEGMGAHVDEMDADHHDLVLAVTSHTPHLIAYTMVGVADD
LRRVTDSEVIKYSAAGFRDFTRIAASDPTMWRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHD
YFTRTRSIRRGIIEAGQDTAAPDFGRGAKK
>gi|99081941|ref|YP_614095.1| histidinol-phosphate aminotransferase [Ruegeria sp. TM1040]
MTQITPQPGIMDIALYQGGAAHVDGVSNVTKLSSNENPLGPSPAAVEAMAEAAATMHRYPSSDHATLRAA
IAETHGLDAERIICGAGSDEIIAFLCQCYAGPGDEVLYTEHGFAMYRISALAAGATPVEVKERERVTDVD
ALLAGCTAQTKLVFIANPNNPTGTMISEAEVARLADGIPEDAILVLDGAYAEYVEGFDAGAQLIAARHNV
VMTRTFSKIYGLGGARVGWAYGPQEIIDVLNRVRGPFNVSTTALAGAEAAVRDTDYVQRCRLENAKWRGW
LADQLAELGVPSDTSCTNFILARFASQSEAESCDDFLKQRGLIVRRVAGYNLPTALRITIGDETACRAVA
AAVKDFKAGAAE
>gi|99081942|ref|YP_614096.1| hypothetical protein TM1040_2102 [Ruegeria sp. TM1040]
MPAAGEDEPALNICRETSAVDQALEAGVDRGPAGAGGYGDRGVKTARSKALIRLLTQLRLFPSRSWRYEE
QVRQGAQTI
>gi|99081943|ref|YP_614097.1| aminotransferase, class V [Ruegeria sp. TM1040]
MIFDEFKTSIKNTADAGQLAATLIGEGVMIPGLRGDVPLVYADYVASGRAMRPVEDFIAEKLLPFYANSH
TEASYCGQYVTRMRREARAEIARLTGAGDDCEVIFAGSGATAGLNRLVKLLGIEEATRPVVFIGPYEHHS
NILPWRESRAEVVEIPEGPDGGVDLAALEAALVAHAEADLKIGSFSAASNVTGIITDPDPVTRLLRAHGA
LAVWDYAGGGPYLPIDMGAHGAEPKDAVVVSPHKFPGGPGASGVLVLRRDAVRAQNPSWPGGGTVSFVSP
WSHRYADSLSAREEAGTPNVVGDIRAALAFLVKEAVGQEQIEAREAQYAAKARAAWADVPGLTLLGHAHA
HRLPIFSFTVEGASGAPVHQQLFTRMLSDVYGIQARGGCACAGPYAHRLLEIDEPQSEALLRDLLAGREL
QKPGWVRLNFSYLMAEETVDYVIESVKALVLEAENVASAYDADPSTARFQPRAA
>gi|99081944|ref|YP_614098.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MSKNLDQIDRDLLRALQRDGSLSQRDLAQRVGLSQNACWRRLKALQDKGILRGTRAELDRSQLDLGLVVF
VMLRTRHHSAEWLAQFRRHVLTIPEVVDFHRIGGDYDYQLKVVTRDMATYDKVYQRLIAGVELDSVTSYF
AMEAIAEGRPLPV
>gi|99081945|ref|YP_614099.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MIAIRPAVSADAESIAAVLEALRQAGNRKTAGDAAFIRETYIENSHRIACSVAVDAAGRLLGFQSLQIAP
EGNPYGAPAGWGVIGTHLHPEASGQGIGRALFAVTRAAAEATHLPAIEALISADNAQGLGYYSAMGFVDY
RETPTAVGKKLVLTP
>gi|99081946|ref|YP_614100.1| hypothetical protein TM1040_2106 [Ruegeria sp. TM1040]
MSKISTLCRALAGAATLTVALSAVALAAPLKLTPADPQPSNLKPGLSVRYAYPADVKTLSAARNALKYKV
EQGAPLAGLDYRDTELGQNVLTAKRAERVVADIRGYVRFERPGVYTIDFLTNDGLHATVGGQVVGEYDGR
QPCEETFAVEVEVPKAGWYPLKALWFQRTNTACLHMRAGPAGKRPKWMPNAAFGH
>gi|99081947|ref|YP_614101.1| 30S ribosomal protein S4 [Ruegeria sp. TM1040]
MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKGYYGDLTEKQF
RRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVKEGDV
IEVREKSKQNVAVLEAVQLAERDVPDYIEVDHSKLTATFVRAPGLADVPYPVVMEPNLVVEFYAKN
>gi|99081948|ref|YP_614102.1| hypothetical protein TM1040_2108 [Ruegeria sp. TM1040]
MKTGFRGTFVISWTQTEIDGLDAAPVAALDVGAAWSWHGDALRVDGPSELLRLDMADGEQDLRRRAARTV
RRLVGAAVQNRSDVHAIEIDDPVSDSSFIVTNGVQSYTVTVIEAGRGRPPLLMFVDDIPPRNTDLWVVHH
ALGYMGADQAPQNPGVICFTPGTRIATPEGPKPVESLREGDRVQTRDNGAQVVQWIGARRMSGARLFVMP
ALRPVRIRAGALGIDRPERELLVSPEHRMLVRGAAARALFNESEVLVAARDLINGHTIDVDTTVREVTYV
HLLLEQHQVIWANGVETESFHPAHAALSALDDKDRKRLLRRLPAIEHDPASYGAFARRNLSASEAAILRH
SAA
>gi|99081949|ref|YP_614103.1| hypothetical protein TM1040_2109 [Ruegeria sp. TM1040]
MIRSLALALCAAIALSATGAAFAADPVRAEPLKRHRIGYGHLIDNDLIGDGKDRWRTGSVASSRIYGFGW
DGQAPAGFGELLELRFLGQILAPDNLRSPAAGERPWAGALSLGVHTHMQRGTLELSLGGDLVFIGPQTGL
DDFQDALHDLANTTRPSDAVRAAQVSNTIRPTLVAEVGRTISLGPRSHLRPFVEARAGDETLVRIGADWT
FGSAGIGELMVRDPVTGQRYRTMYETRGISFTLGADVAHVAQSVYLPEGRGYDLTGRRDRLRAGLHWQGD
GRDFFYGITYLGKEFSSQPEGQLVGSLRLRWTF
>gi|99081950|ref|YP_614104.1| rhodanese-like protein [Ruegeria sp. TM1040]
MAQLKTSSAQMVAAARARIAEIDAAAAIALHDAPDVVFVDLRDVRERQRMGFIPGSFHCPRGMLEFWVDP
DSPYFKEIFAEEKRFIFHCASGWRSALSVALLQDMGFEAAHISDGFSGWRSAGGPVVEPVDES
>gi|99081951|ref|YP_614105.1| L-pipecolate dehydrogenase [Ruegeria sp. TM1040]
MRADTSLSQSNAEPISLWDHSSEEPAYANPNARESRVDVAIVGGGYTGLSTALHGALKGLSCHVLEAAEI
GHGGSGRNVGLVNAGLWLPPQQVEHLLGKTHGGALVRTLGEMPDYVFSLIEHHQIRCEATRAGTIHAAHA
ASGLRDLEARAAGWQALGAPVRLLSAEETAEKTGTVKFHGGLLDARAGTINPMGYVRGLARAARAAGAEI
STQTKVLSLQKDGADWKVETDRGVITAGRVVLATNAYSADLWPKLAQSFTPIHFFQLATAPLGAEASAIL
PDGQGLWDTGKIMFSLRRDRAGRLIIGSMGSVVGGTAGLSRRWAERKLRRLFPDLGRLDFEDAWHGQIAF
TPDHLFRIHRLDEGLYAPVGYNGRGITTGTLFGRALADLFAGAPEESLPLPISDLVPDRGRAVKTQLYRS
AFLAKQAAESIL
>gi|99081952|ref|YP_614106.1| IclR family transcriptional regulator [Ruegeria sp. TM1040]
MLKENRSLDRGIEILETLAREGAMSLADLHRATGLPKSTLRRLLQTLIARKIVRRSLADKLYRTLVVFPD
ISGEVMPKGMLHISEAAIPRALALTKEIGWPSDIHIRETRAMRIIDNTRHASTFHVERGQINQRVSHFGS
ATGLACLAEMKDAEIATIYEAFKPDLQWGPVRFGLDLAGLMARIEQVRQVGYAERLSAPMSDPDWDTDLR
AIAVAIKARGRVVGGLSVLWLRPYKPVEEFARLHLEALQTAAAEINATLDAVWEDAAT
>gi|99081953|ref|YP_614107.1| sulfatase [Ruegeria sp. TM1040]
MPPSGMFCQRVFVPPDLTYRRFGTRNKACAMNILFIMFDQLRFDYLSCAGHPHLKTPHIDRLAERGVRFT
NAYVQSPICGAARMSCYTGRYVSSHGAQWNNSPLRVGEWTMGDHLRMAGMGCWLIGKTHMNADSEGMARL
GLSPDSVIGARQAECGFDVWIRDDGLWAEGPDGFYDQKRSPYNEYLKSKGYAGHNPWHDFANAGLEGEEM
ASGWFMANAQKAANIAEEDSETPWLTTKTIEFIEQAEGPWCAHVSYIKPHWPYIVPAPYHDMYGPEHVLP
AVKDPAEREDPHPVYGAFMGNAIGQAFSREEVRQAAIPAYMGLIKQCDDQMGRLFEYLEDTGRMDDTMIV
ITSDHGDYLGDHWLGEKDLFHEPSVKVPMIIYDPRPDADATRGTTCDALVENIDLLPTFVEAAGGEVADH
ILEGRALTPWLHGQTPEVWRDYAISEYDYSGTPMSVKLGSAPRDARLFMVTDTRWKFMHAEGGLPPMLFD
LENDPQEFHDLGRSPDHTEVIDMMYARLGQWGRRMSQRITRSDAQIIAGRGASRGKGILLGVYEPEDVPA
ELTVKYRGKPPT
>gi|99081954|ref|YP_614108.1| hypothetical protein TM1040_2114 [Ruegeria sp. TM1040]
MLLVENFDLRATMEQPTSFDEMWGTSGSLREPYREFHDWFGSEDPARLRKKQRDADKLFRLTGITFNVYG
KAEAEERLIPFDIIPRIISGSEWARLSRGIEQRVRAINAFLYDIYHKQEIVKAGRIPKEMISRNDAFLPH
MIGVEPPGGVYTHIVGIDLVRTGPGEFYVLEDNARTPSGVSYMLENRETMLQMFPELFSQNRVQPVSNYP
TDLRRSLAASAPQSCTGKPVVAVLTPGIYNSAYFEHAFLADKMGVELVEGQDLRVIDGRVAMRTTRGYKP
IDVLYRRVDDEFLDPLNFNPESALGVPGIMDVYRAGNITIANAPGTGIADDKAIYSYMPEIVEFYTGERP
LLQNVQTWRCSEPDALAYVLDNLEDLVVKEVHGSGGYGMLIGPTASKKDLAAFRRKLKARPGNYIAQPTL
ALSTVPIFSRAGLSPRHVDLRPFVLCSPNKVHITPGGLTRVALKKGSLVVNSSQGGGTKDTWVLED
>gi|99081955|ref|YP_614109.1| hypothetical protein TM1040_2115 [Ruegeria sp. TM1040]
MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEWVSILQSAGSLGGFREAYDTHGQDAAV
DWMLRGKDNPSSIMSSIASARQNARLVRAAITGEVWEAINATYMTASDLLARKVSARDLPDVLASIRQHT
ALMRGMVHGTMLRNDIYDFLRIGTFLERADNTARILDVKYYVLLPSVSAVGSSIDNVQWESILRSVSARG
GFRMEYGADGGPQEIAHFLIFDKRMPRSLAFCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLSHGIE
EVFDYGLHEFIEKMLELLLELAHQIQLDYRFYE
>gi|99081956|ref|YP_614110.1| transglutaminase-like [Ruegeria sp. TM1040]
MRLTIHHTTRYRFDEPVSFGLQQLRKTPKTNTNQQVVEWQTRIIGGQKEVSFDDHHHNVTELISFEPGVT
ELELVSEGVVELTDTHGVVGRHRGPSPLWLYARPTVLTEARAGVRELIRDLDDSNPVDMLHQLSARIREA
ITYQIGVSELGWSAEDAIQSAHGVCQDHAHVFIACARKLGLPARYVSGYLMLDDRTTQDAMHAWAEAHVE
GLGWVGFDVSNGISPDARYVRVATGLDYSDAAPVSGTRIGGAGEALDVQIEVAQQ
>gi|99081957|ref|YP_614111.1| 20S proteasome, A and B subunits [Ruegeria sp. TM1040]
MTYCVGMMLDAGLVFMSDTRTNAGLDNISTFKKMTSWEAPGERAITLLSSGNLATTQAVVSLLEERPHAH
GERDPSILGVPSMFQAARLVADTLREVIAQHDAAGQQADSAFGATLILGGQIKGGPPRLFMIYPEGNFIE
ASADTPFFQIGETKYGRPILVRAYDPKMSFEAAIKLLLVSFDSTVKANLSVGAPFDFHFYRKDSLQLDTT
GRIDADNPYLQLISQGWGDALKNALESLPDFALE
>gi|99081958|ref|YP_614112.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp. TM1040]
MIADNPPKRLDKAIARDVPEEANLSRTRLARLIESGGVFVDGARANDAKSRVAEGALIVITVEEAEDSHI
GPEDIPLDVIHEDADLIVINKPAGMVVHPAPGSPSGTLVNALLHHCGADLSGVGGVKRPGIVHRIDKETS
GLLVVAKSDAAHQGLAAQFERHTVERYYQAVCYGVPDGNDPRLRGVRGTSFEPGNILKITTQLARHKTDR
QRQAVLFEGGRHAVTRARIIEAFGAPAAASLVECWLETGRTHQIRVHMAHAGHGLLGDPTYGGKRKISPK
ALSAAGLAAINSFQRQALHAAVLGFEHPVSGEMMRFEAPLPEDMQALIAALRIPASV
>gi|99081959|ref|YP_614113.1| hypothetical protein TM1040_2119 [Ruegeria sp. TM1040]
MTHPSEPEDITEPTQLRFLRRLVTTLTVIMVGGVLVVIALLVIRLSDDTHAPQVPADISLPEGATARAVT
FGSGWLAVVTTEDQILILDSETGALRQQIQID
>gi|99081960|ref|YP_614114.1| hypothetical protein TM1040_2120 [Ruegeria sp. TM1040]
MEPGGSLFCAAKHLRQRDGDSLVLGRVALWIYAAALKCTDEADILHFRGLQASTLAHRDPKELDMGINTE
RDIEANMQIGPTDVGMVRIFIEADGLEIPMDFDPEEAEEIADEIRAAAQAARAVSS
>gi|99081961|ref|YP_614115.1| putative CheA signal transduction histidine kinases [Ruegeria sp. TM1040]
MYHFTTPPLGPVVILPSAIATANGPQAAAVSISDSESLTTNQLHNQLSEARRARDKMIEQVSRPPEPGWK
SAMHQISDTVDHMEKVLDLLRSHVSALPASPATGSDPLAVYPSGVAMQQSGRTPDSPPSVAEAPAAPTAA
SDPAAPPAAGPQDPNVSAQALASSQPRVIYVMNDGVVIIGLPQTEADATTGTAEAASPASRDNSTDAAGR
ADPLQPPQSGAPMTANTVISLPLTEDQKRASADLIALAKKAYAYQAQPRDAQAAELISDENVGLTGALSE
SPELSAPDRPERAPVPRILTAELAQPDAGSQRPAANDDPLIAAAAPYARDPQREAAQAQEEQQILALQLD
GHHDIIYIVPPAQAAIDLTA
>gi|99081962|ref|YP_614116.1| hypothetical protein TM1040_2122 [Ruegeria sp. TM1040]
MQPGQRLARGVSRYLRSMGFAALEEFVPQRGLRVDVMALGPKGELWVIECKSSRADFQSDGKWQGYLEWC
DRYFWAVDVEFPTELLPEGTGLILADAYDAEVVRMGPEQKVAPARRKKMTQKFAMDAARRLQRLRDPRPG
REAFAFAVSEEDCDS
>gi|99081963|ref|YP_614117.1| hypothetical protein TM1040_2123 [Ruegeria sp. TM1040]
MPELIKLYIKSALWGLVLAALFVAILLWFNIANLGALVFGSDSGVIAVLALWISNAVVFGGVQFGFKIMA
MAERDDTPRGGTWVGPEMQPVPIPAKASKPQRRTLR
>gi|99081964|ref|YP_614118.1| adenylate/guanylate cyclase [Ruegeria sp. TM1040]
MKITRRIGRFLVNQPHLINWGIGAAIVALPVVVWMDLMAITDQSLRRQGQALDAVLDTVRSYYARNVIGR
LNPDGSTFATHDYHDRDGAIPIPATMAIELGDQIGTHGLNVQYRFASDYPFHGRETTELTWAEDHALSRF
REGVDDHYLFYRGEESGLLTHAVTMITPVVMEEACVACHNNHSDSPKTDWAVGDIRGVQSYSIVQPVAVS
LFSFSHLLAYMVVAGGFGAFFALHQLRLAQRFRKISEELSSNNEFLAGISMKISRYLSPQVYRSIFSGEK
DASISTERKKLTVFFSDIKDFTQTAETLQPEELTALLNEYFTEMSAIAAKHGATIDKFIGDAIVAFFGDP
ETLGTAEDARACVRMALEMQERLRELEKEWRARGIDRPFRARIGINTGYCNVGNFGSEERMDYTIIGAEA
NLAARLEAAAEPGGIVMSHETYAHVRDFVAATPMPPMQFKGITRDVHPYAIAPGQSGNLPPTETSMDGKS
LTVHLERLDDTTRAQLEAILGKPLKG
>gi|99081965|ref|YP_614119.1| choline/carnitine/betaine transport [Ruegeria sp. TM1040]
MTDQTTETPDGIPSPDGAAHIIDTDYEIGQDNVEGSVGPFGFDIHNPVFAISGIAVVAFVFYTLALPEQA
GNVFSWLFSAVTKGFDWFFLGAANIFVIFCLFLIVTPFGNVRLGGTEAEPDYSYIGWFAMLFAAGMGIGL
MFYGVSEPLSHFASSIGGTASEGGVRTDWAPLGAAGGNEAEAVRLGMAATIFHWGLHPWAIYAVVALALA
LFSYNKGLPLTIRSAFYPIFGDAVWGWVGHVIDILAVFATLFGLATSLGFGATQANAGLNELFGISIGST
TEVILISAITAIALVSVLRGLDGGVKILSEINMGLAFVLLVFVLLVGPTVFLLSLFWDSLMAYFQYLPAL
SNPVGREDVNFMQGWTSFYWAWWISWSPFVGMFIARVSRGRTVREFIICVLLIPSMVCVLWMSVFGGTAI
HQVLSDGYTVAQDAALELKLFKMLDVMPLAGITSLVGIVLVIVFFVTSSDSGSLVIDTITAGGKVDAPVP
QRAFWCVFEGAVAIVLLLSAGGLQSLQSMVISTGLPFTVVLLVMCYAILRGLMSERKAT
>gi|99081966|ref|YP_614120.1| hypothetical protein TM1040_2126 [Ruegeria sp. TM1040]
MFQKIVVPVDLAHEAALQRALDVAAAMAKTHSADVCYVGVASANPGAVARSPEEYASKLEQFAQSQAAQH
GITASAHAIMSHDPAVDLNKALERAISDLKADLVVMATHVPNISDYIWAGHGAHVAAHSAASVLLVRD
>gi|99081967|ref|YP_614121.1| NusB antitermination factor [Ruegeria sp. TM1040]
MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYAEGDTKLFRQL
VNDAVNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPVKVVINEYVDIARAFFPEGRE
ASFVNAVLDHMAREAKPEAF
>gi|99081968|ref|YP_614122.1| 6,7-dimethyl-8-ribityllumazine synthase [Ruegeria sp. TM1040]
MAGQESHYILPRPEFDKPVKLLIVVSPYYKDIADNMVAGAVAEIEAVGGTYEVVEVPGALEIPTAIGISD
RASNFDGYVALGCVIRGETTHYDTVCNDSSRAIQLLGLQGLCIGNGILTVENRKQAEVRADPEDQNKGGG
AAAAALHLIALARKWGAQTKGVGFKPASDSYRLA
>gi|99081969|ref|YP_614123.1| GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase [Ruegeria sp. TM1040]
MSYETPGPVESELRDAISPIEEIIDAARAGKMYILVDHEDRENEGDLIIPAEFADADAINFMATYGRGLI
CLPMTAERIDRLGLPMMAVNNSSRHETAFTVSIEAREGVDTGISAADRALTVATAINEQNTMAAIATPGH
VFPLRAKRGGVLVRAGHTEASVDISRIAGCHPSAVICEIMKDDGTMARLPDLVEFAKTHDMKIGTISDLI
AYRAKNDNLVDETARSTVTSEYGGDWEMRIFTDQTHDVEHVVLIKGDITTPEPVLTRTHALHEASDLLGL
GPKPAGELPRAMELIADEGRGIVCLFRQPRNALYASDEEGVRTIKQTGLGAQILNKLGVEELILLTDSPQ
TKYVGLDAYGLSIVGTRPILSRDS
>gi|99081970|ref|YP_614124.1| hypothetical protein TM1040_2130 [Ruegeria sp. TM1040]
MGGRPTLGSVPGLGHNGGPSLEPGALWRTHAWRSAQKKLMPNTLPKLVLQMRLKRAAELGMDYKTYAKVR
QTSGQDVLGLLFSSNALRLLKDPRLPEVERARLAHLKRAERLALTYPPLRPSEVARVNPEIDAADTAPVF
TEGWTEMRAKLQGVMRQRGLSGASVLVIGDAPLENEWAAAGRAAAYLSAAEYFGASARRP
>gi|99081971|ref|YP_614125.1| riboflavin synthase subunit alpha [Ruegeria sp. TM1040]
MFTGIITDVGTITELEQAGDLRARIQTAYDTSSIDMGASIASDGVCLTVVALGPDWYDVQISAETTSKTN
IDARGTHKGWFVGKRVNLERALKVGDELGGHIVSGHVDGVAEVVAMRDEGDSTRVTLRAPKELARFIAPK
GSVALNGTSLTVNEVEGCDFGINFIPHTKEVTTWGDVAVGDLINLEIDTLARYVARLQESL
>gi|99081972|ref|YP_614126.1| capsule polysaccharide biosynthesis [Ruegeria sp. TM1040]
MPMRSKNGSADARSFLFLQGPHGPFFAALGRMLRAAGCSVHRVGFNTGDRVFWPDRQSYIAYRDTPEAWP
ERFGALLDQRAITDIVLYGDTRPIHADAIAIAKARGITVHTFEEGYLRPYWVTYERDGTNGNSRLMQMPV
PEMEQALANSDLEMPMPPAHWGDTRQHVIYGALYHWFVMFLNRGYRNFRPHRALPVTKEFQLYLNRLLMM
PLHALHRRLATMRIQRGGFPYHLALLQLEHDSAFQAHSPFSTITEFLEVVVAGFAEGAPRHHHLVFKAHP
LEDGRAPIRRALKRLAAEHGVEGRVHYVRGGKLAALLNEARTAVTVNSTAGQQVLWRGLPLKVFGRAVYD
KPEFSSTQSLPEFFAAPARPDGRAYKQYRRYLLETSQFPGGFYSRSGRRQLLRQVVDMMLAADDPYDALL
RGTAAPRQHLRVVS
>gi|99081973|ref|YP_614127.1| polysaccharide export protein [Ruegeria sp. TM1040]
MTLRWARPVALLAAVALAASCGLPKVGPNKREIFAGSVQKQGDAFVVSVNDRVARATAVVPALGFSDAFT
KASVLTSDIIRPGDILGLTIWENVDDGLLASAGANATLLEEVQVDGAGFIFVPYAGRVRASGNTPEQLRE
AITKKLEDQTPDPQVQVRRLAGDGATVSLTGAVGAQGVYPIERPTRTLATMLAQAGGVAIEPEIAQVSVT
RQGQTGTIWFEDLYDHPQMDIALRNGDKILVEGDTRSFTALGATAAQARVPFESQNLSALEALAQVGGLI
ATASDPTGVFVFRNEPEAISNQVLGRDDLIGAQRMIYVLNLTQPNGLFIARDFVIRDGDTIYVTEAPYAQ
WTKTLSLLTSPLSTAASVETLFGGS
>gi|99081974|ref|YP_614128.1| capsule polysaccharide biosynthesis [Ruegeria sp. TM1040]
MMQGPLPHLDETRTGSKRSRLFVYNGGFLTQSRVRRILDLAGYDIRLGLPKEGDLVGIWGNSPTAHRGRK
IAQEHNAPLVRIEDAFLRSVHPGRDGEPPMGLLIDRAGVHFDPALPSDLITLLKEHPLDDSALMKRARDA
MARLQDAHLSKYNAFHPDVPPPEPGYVLVVDQLRDDASVKASIPFPGADRGRFQEMLAFAREENPGARVL
IKTHPETTKGHRAGYFDARDTNDQVELFDAPVSPHLLLEGAVGVYTVSSQLGFEAILSGHRPRIFGQPFY
AGWGLTQDEFPPAGRHRRLTRAQLFAAAMILFPTWYDPHHDRLCELEDVIDSLEAQVRAWREDRAGWAAS
EMRLWKRAPLQQFFGRHKRMSFTEKTATAKKSGKNWMVWASKATKDHAGAHHLEDGFLRSRGLGAELVPP
LSLVLDRQGIYYDPTRHSDLDDLIRERVTLSPQQERRIEALVMRLIKHEVTKYNLDGALPDLPKGHRVLV
PGQVEDDASLRLGAGKINTNMKLLQAVRAARPNAVVIYKPHPDVEAGLRKGRISHAEAWADVVAEHANPA
ALIDSVDEVWTMTSLLGFEALLRRVPVTCVGLPFYAGWGLTRDRLQAPHWRDARPGILGLAHAALIDYPR
YFDPVSKLPCAPEVAVDRLIAGELPARSPLNSSLSKLQGLFASFAPLWR
>gi|99081975|ref|YP_614129.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ruegeria sp. TM1040]
MGLALSLGRRGQGRTWPNPAVGCVIVQKGRVVGRGWTQPGGRPHAEPMALAQAGAAARGATAYVSLEPCA
HHGKTPPCAQALIEAGVARVVAAIEDSDPRVSGQGFEMLRAAGISVTTGVRAEEAGFDHEGFFLKTEQGR
PFVTLKLAASFDGRIATGSGQSQWITGPEARRVVHAMRARHDAVMVGAGTARADDPSLTVRDLGIDQQPA
RVVVSRHLDLPLISKLARSAAEVPLYLCHGTGADTERLRAWDGLGAHLLPCNALGTQLDPHDVLQQLGSV
GLTRVFCEGGGALAASLLAHDLVDELVGFSAGLTIGAEGLPSIGALGIGHLSEAPRFDLHETRPIGADIL
HRWRRPQN
>gi|99081976|ref|YP_614130.1| transcriptional regulator NrdR [Ruegeria sp. TM1040]
MRCPFCGNVDTQVKDSRPAEDHVSIRRRRFCPACGGRFTTYERVQLRDLVVIKTNGKREDFDRDKLERSI
RISMQKRPVDPERIDQMISGIVRRLESMGETDIPSKKIGEIVMEALARIDTVAYVRFASVYKNFQAADDF
EDFVHELRPPAPPES
>gi|99081977|ref|YP_614131.1| hypothetical protein TM1040_2137 [Ruegeria sp. TM1040]
MSNIQQRTFTLSTHGQGLYEITDEIRSFVRSSGAVQALLTLYVRHTSCSLLIQENADPEVQGDLKAYFAR
LVPPTTDPQMSYLRHTYEGPDDMPAHIKAAMMPVSLSIPVSSAEMVLGTWQGIYLFEHRDAPHQRQIVAH
LA
>gi|99081978|ref|YP_614132.1| hypothetical protein TM1040_2138 [Ruegeria sp. TM1040]
MRQSSHSMTRRLMLPALAATAALAGCADIQSTGPQADYFSSRALARIYALEDGRFEVVPEIGAEGAAYWC
AASEYARRALGAGWSQDIYVAKGRAPSTVSGRIDAVTFSLSPVPSVTDKSPFIKTFGFKPGDNFSVSTGE
SLCRDIEPVFFF
>gi|99081979|ref|YP_614133.1| hypothetical protein TM1040_2139 [Ruegeria sp. TM1040]
MSGTNEMKNALSELDEKLNALDTMTEVNSFLVSALREHEQELIRMSPQETRDMLRQKARVRYRADGGETP
NPQALDMLEKTLGNGHTAEIIKFPSGGRAGRA
>gi|99081980|ref|YP_614134.1| hypothetical protein TM1040_2140 [Ruegeria sp. TM1040]
MTSIFKIAPIFAVFIAAPALSCPQGATPLVSCSLKSGSAYLETCRLGNFATYAYGKTGQRPDLALARPVQ
EVEMTPWPGVGRSIWEDFQFRNGDVSYRVFYSIDRFSEGEPALTAGVMVEKGEETLAELDCDPGTIDAGY
PLPLWDAQELAAQARN
>gi|99081981|ref|YP_614135.1| RNA polymerase sigma factor RpoD [Ruegeria sp. TM1040]
MAAKDTDDRKPDDQDAEISLDMSQAQVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQIEDVMSMLSEMG
INIIEDEEAEEEENKGTTELVTTESNREVAVAGAATEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKR
IEAGRNTMILGLCESPLTFQAITIWHDELLSEDILLRDVIDLEATFGNQMDEDGDVAEPVVDPSAVSGAA
KPEKDSGPELDADGNPILNNDDDDDDDDDQANMSLAAMEAALKDRVLETLERISSDFAMLSEMQDLRISA
TLNEDGSFSADDEAKYQQLRSEIVELVNGLHLHNNRIEALIDQLYGINRRVMQIDSAMVKLADQARINRK
EFVEAYRGRELDPNWLSEMSEKPGRGWQMFIERSTEKVEELRADMAQVGQYVGLDISEFRRIVQQVQKGE
KEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI
TRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLET
PIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQ
FSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
>gi|99081982|ref|YP_614136.1| DNA primase [Ruegeria sp. TM1040]
MSLPPGFLDELRTRISLSDVVGRKVMWDQRKSQPGKGDMWSPCPFHHEKTASFHVDDRKGFYYCFGCHAK
GDALKFVQETENVSFMEAVEILAGEAGLEMPKRDPKAAEKQDRRTQLAEVMEQAVKYFRLQLKTQAASEA
RAYLARRGLDAAALDRWEIGFAPDGWQNLWDALKGKDIADDLILGAGLAKPSNKGKKPYDVFRNRIMFPI
RNARGRAIAFGGRAMDPNDNAKYLNSPETELFDKGRNLYNHGPARAASGRGSTLIVAEGYMDVIALSEAG
FQSAVAPLGTAVTDNQLHLLWRMSDEPVIALDGDTAGLRAAMRLIDMALPLLEAGKSLRFAIMPEGKDPD
DLIRAEGPEAVQAVLDQAIPMVQLLWRRETEGRVFDSPERKAALDKSLREKIKLIRDPSIRLHYANDIKE
LRFQLFRGQRGGGGQGGTGYGQRYGGFKPGSRMQGGFRDGARMPWGAPPPPRSTTRASMVASSEEQDFAR
VREAVILATAITTPTVIPEFEINLERMQCQDMEHAHLRDLVLRYGIEAPERLRDEIAYALGPDALENLLS
LRHVAISPCVRKPGDLDMASLTLAEEFAKLESIAGLNAELAEAEEDLDGLADEALTWRLRQAAEARNRAV
RSENEDKATYDVGENGARLNRDERDAFGDLLKRIGFNSK
>gi|99081983|ref|YP_614137.1| hypothetical protein TM1040_2143 [Ruegeria sp. TM1040]
MIRNIFAAAFVAAPLFASPASADDYGKEDSCKYQGQVMAAVQAARLDRVPEAKVEETIRASNPEWPENFS
NAIPQLTQHVYQMKRRDLKNIDLGEVFETQCVENWDQIQEMKKNLSGG
>gi|99081984|ref|YP_614138.1| sarcosine oxidase, gamma subunit [Ruegeria sp. TM1040]
MAEIKMQLAAKSPCEGLLPLTIGDVTLTEDMPAAMTLIAPYKGRKDALSKALNAAHGMAFPAPNRATGKV
GGRAIWFGRAQALLIGPAADPSLAAHAALTDLSDGWAVVRLEGDQAENVLARLIPIDLRATVFKRGHTAR
TEIKHMMGSITRIGPKAFQIMVFRSFSETLIHDLKRAMEAVAARG
>gi|99081985|ref|YP_614139.1| sarcosine oxidase alpha subunit family protein [Ruegeria sp. TM1040]
MRVSGKGLLSGNRTVNFSFNGKAYMGLEGDTLASALLANDVHLVGRSFKYHRPRGILTAGSEEPNALVSV
GRGAARDPNIRATQQEIFEGLAAQSQNCWPSVERDVMAVNDLAAPFLGAGFYYKTFMWPAPLWEKFYEPI
IRRAAGLGALSGAANKDPYEKAFAFCDLLVIGSGPAGLMAALTAGRAGADVILAEDDSRMGGRLLAEIEE
IDGKPAHVWVAEVLAELEAMENVRLMPRTAVTGVYDQGTYSALERVSHHLPPSQSLKTAHRPRECFWRIA
AKAAVLAAGAIERPIAFRNNDRPGIMMAGAVRAYLNRWGVAPGERITVFANNDDAHRTARDLVAEGVHVT
AVVDSRHDAPDSGEFPVIKGAVICDSAGRQRLESVTIRSVNGEEKLQTDCLAVSGGWNPSVHLTCHMGAR
PEWNRELTAFLPKPDAVPGMVVAGAANGVFSTHGALRDGAEAAATALGKIGRSAAAVAVPEASDAPYQIS
PLWAVPGKGRAWLDFQNDVTVKDVAQAARENFRSVEHMKRYTTQGMATDQGKNSNVAALAVLADATGRSI
PETGVTTFRPPFVPTSIAAMGAGAEDQGFLPQRFLTSHKASLARGAANIEVGLWYRASYFAKDGESTWRQ
SCDREVTMVRNAVGVCDVSTLGKIDIQGPDAAELLDLVYTNLFSTLKLGRVRYGLMLREDGFVMDDGTTA
RLGENHYVMTTTTAAAGQVMAHLEYLTQVVRPDLDVRFTSVTDQWAQFSVAGPKARDLIDALVDEDVNGE
TFPFMACGVITVLGVAGRLFRISFSGEHAYEIAVPARYGEALYERLLERAEALGGGPYGMEALNVLRIEK
GFITHAEINGTVTAFDLGMQGLVSKNKSCWGKALSERDGLMHDDRMRLVGLKPVGAAQEMSAGAHLFDPD
ATVERVNDLGYVTSVGFSPTLGHMIGLAMLSGGPDRMGDTIRLVDHTRGIDTLCEVVNPVFFDPEGGRVR
G
>gi|99081986|ref|YP_614140.1| sarcosine oxidase, delta subunit, heterotetrameric [Ruegeria sp. TM1040]
MRITCPLCGARDHREFTYRGAALAVPALDAGEAAWDAHVHLRDNPAGPHEELWQHSMGCGAWLKVRRNTA
THEMLDVMLAEDAELAVPGEAS
>gi|99081987|ref|YP_614141.1| sarcosine oxidase beta subunit family protein [Ruegeria sp. TM1040]
MLHIVETPFEEWAMGFSEKFSGWRVLKEGLTGNKGWTAHWRDPEPKREYDVVIVGGGGHGLATAYYLAKT
HGLRNIAVLEKGYLGGGNVGRNTTIVRANYYLPGNSEFYSHSLKLWEGMEQDLNYNAMMSQRGILNVFHN
DGQRDAAVRRANSIINQGDDAEILYRDQLKKLVPFLNYDNNRFPIMGALLQRRAGTARHDAVAWGFARGA
DQYGVDLIQNCEVTGIDVDGGKVTGVQTVRGPIKAKKVALAAAGRSSQVAAMAGLTLPIESHVLQAFVSE
GLKPVIDHVITFAAGHLYISQSDKGGLVFGSYLDFYSSYAARGNLAMQEHTMEAITAMVPAVTKARLLRS
WGGIMDMTPDGSPIIDVTPIDGLYLNAGWCYGGFKATPASGDCFAHLIATGRPHEAATRFRLDRFRSGFG
LMDEEGTGAQHNLH
>gi|99081988|ref|YP_614142.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MQLPSVFAVLSRLDCHYRLMSVIECMRTRLSRSARRAEILGNAQKLIAARGFSGTEMEDIRLASGISRGG
LYHHFANKHAVLDALVAEEVRRLADQLKAAQGSPIPALLRVGSSDLGNDPGLVSHLHTPEEKRAYLSSLE
QAIPAELGPVLHERLRGHTAEGAAPAHVAELFLTITAHINRRRILNEWPPEEAAGFTATALRALLPLLTS
QAELQPVIAELKRVAATS
>gi|99081989|ref|YP_614143.1| abortive infection protein [Ruegeria sp. TM1040]
MLIGFLALTFGISLLSFACVVAIPAARTPESAAGLPFWLVMVWGPSLAAILISAQNGQLPALLLHSIEFS
TVPPVVWILVLAPLLMLLMLRPFAPEQRRPVGPGVIAAMVGLNLILGPLGEELGWRGIMQADLNPRIGWL
SASLLIGVVWLIWHLPLWTIDTPHSQITLPLFAAHCLLYAVIIGAAYTLSGGSILPAILIHLTVNLASNF
ATFAGFRDPNAWFKASLWPYLALAAGAVALVYAHLGQFGLWPQP
>gi|99081990|ref|YP_614144.1| Glu/Leu/Phe/Val dehydrogenase [Ruegeria sp. TM1040]
MSNLKEPSFRESVDLMFNRAVALMDLPPGLEEKIRVCNATYTVRFGVRLRGQIHTFTGYRSVHSEHMEPV
KGGIRYAMGVNQDEVEALAALMTYKCALVEAPFGGSKGGLRIDPRQYDEHELELITRRFAYELAKRDLIN
PSQNVPAPDMGTGEREMAWMADQYARMNTTDINARACVTGKPLNAGGIAGRVEATGRGVQYALQEFFRYE
EDKAKAGLSGTLDGKRVIVQGLGNVGYHAAKFLSEEDGCKIVAVIERDGGLYDENGLDIEDLRAWIEKHD
GVDGYPSGRYIKNGAKYLEEDCDILIPAALEGVINLSNAENVKAKLIIEAANGPVTAGADEILRKKGTVI
IPDMYANAGGVTVSYFEWVKNLSHIRFGRMQRRQEEARHQLVVDQLEMLSESMGKTWSLDPKFKEKYLRG
AGELELVRSGLDDTMRIAYQSMRQVWHERDDVSDLRTAAYLVSIDKVASSYRAKGL
>gi|99081991|ref|YP_614145.1| hypothetical protein TM1040_2151 [Ruegeria sp. TM1040]
MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLERDRTKLQYTL
DRAVLAAADLDQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKASVDTNFTASWMNNVFYDDYIR
NPDTYQLEPITLPLLASSTAVESIGNVEISLVLDVSGSMRSNDRLVNLKRAAKEFVQTMDDNTEDGKMSI
SIVPYSTQVSMPEAFLDELNVSSEHDYSHCINFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLV
RQPTCAAHSDNPERTALLLSDNVTQLQNYIDAFVPSENTSIDLGMKWGSALLDPSVQPVIASLADDANPN
QSIASRFANRPVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWYNAQERVYSTYDPNRGSKPYY
WDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTSLRYLRDRLFG
DWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPSRGQEVLQACASSASHYYDVD
GLEISDAFASIASAIRQLRLTE
>gi|99081992|ref|YP_614146.1| TadE-like [Ruegeria sp. TM1040]
MIHLRFISKPLRQFRRDEEGNATVEFAMLFPLMLMVLFASVELGMITFRQIMLDRAMDMTVRDIRLGTGG
DMQHDDIRDTICARTSFIDQASCDVSLKLEMVRLDPFNWAGIPPEPDCVDSVEEVDPVLTFTNGASNDLM
YLRACVSIEALFPHWGLGKAIRKDDDGRLNLFASSAFVQEPQ
>gi|99081993|ref|YP_614147.1| hypothetical protein TM1040_2153 [Ruegeria sp. TM1040]
MFRKIAHKFRAFRRDEEGNIAVEAALYLPLLLFVFAATYTLFDLFRQETVNTKAAYTVSDLISRETTALN
DEYINSIYTLGKLMARAGSDMSMRISVIRWDAADDRYYVDWSVERGNQLDIWTDATVTAINDKLPTMPDQ
ERVIVVETWNNVDPAFKIGIGQREIYNLIFTRPRFASLVAFEGTVVSDGTVHDDDVTDTGS
>gi|99081994|ref|YP_614148.1| hypothetical protein TM1040_2154 [Ruegeria sp. TM1040]
MTENLPTIAQAKAMAREWRAARQQAGESLRHGAALEHVARQLGFRDWNLCAAMLSQAEAQRYQPGQVVRG
RYLSQPFSARVLRATAVEGRVGWVRLELDLEVPVDVVTSQRFSSFRRRVNGVIGPEGFSREQTSDGQPHL
VIDP
>gi|99081995|ref|YP_614149.1| multi anti extrusion protein MatE [Ruegeria sp. TM1040]
MSTSPPNRFLTARLGPVYAKTALPIIFVMGMNGFLTVADALFLGHFVGPEALAAVTLMFPGYMLVVALAT
LVASGMSSRLARHLGAGDTEAAQADFAAAHGLALSVAVGLMAAFALWGSAVAHAAAGGDRLLADMGHTYL
RITVGCTPLLFVLSVNSDALRNEGRAGLMALMSLVVSLSNIAFNYLLIAQAGLGVAGSALGTALAQVLAL
SLIVAFRLRGDTVLRPSCLWRQSLWGGWGRMLALGAPQSLNFIGIALGSAVIMFALQWVDVSDYATTVSA
YGVITRLLTFTFLPLLGLSHAMQSITGNLYGAGQILRVGQSLRFAVVSALIYCAVMQAGLTWGAAWIAAW
FVDDQGVIEDVARILPILGALFVLAGPLMMVAMHFQAIGDAPRAALLGLSKPYLFSIPLTFMLAALWGEP
GIWLAAPVAEAGLLVLTGLVLLDLRRRRDQVTSKVQERRA
>gi|99081996|ref|YP_614150.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
MSDLDASWILVCALLVLLLQAGFLCLEAGTVRAKNSANVALKNLSDVCIVSTCFWLVGFGLMFGESFNGL
FGTTQFWLALDNDSGHAASIFLFQMAFAASAATIVSGAVAERERFLGYMVVSVALSALVYPVVGHWIWNQ
AGWLRQMGFVDFAGATVVHSVGGWTALVTIIILGPRLGRYGPKKRRFDEYSISLVTLGGLLLWVGWGAFN
GGSAMAFGTGVGPIIARTMLLAAGAGVASIAIGLGLFRHVRAELLVNGFLGGLVAGTAGVHLMTGTVAFG
IGALGAVTVIIARDILDALKIDDVVGAVPVHLAAGLIGTLSIAFTAPVDLLPAGSRLAQLGIQALGITAV
GGWVVCSMAPLILLLRARGLLRVHPKDEVRGLNLTENNQRNALMDLLAEMKRHQRSGSFSRRVRIDRSTE
YGVLAYRYNRVLDRVEAEINARVDSIRKERMSRLLAEEAFESMREAQEENAWSARHDKLTGLGNRKYLEE
VAVETSTGPLGATLLIAIDLDRFKEINDTYGHEAGDVVLEHTAQRLSEKIRTGRDFAFRIGGDEFVVLME
FAGTQDDAFEYCSDLLFELLQPVRYKATDLQVGASIGFALCKPPETLGAALRRADLALYASKADGRSCVN
AYSASIGSAHDEKMNLIRDFKQAFANNEIEVTLQPQIDGKTMEIAGCEALARWHHPVRGIVSPDVFVPVA
KEVNMLADLDRRILDLALAAYWNFASHGIALPSLSVNVSAERLGHPDLIKELQQREDLPPDGLAFELLET
VFLDQLTENYANQIAALKAMGIAIEIDDFGTGHASIAGVLALKPDRLKIDRMFTSGIDEKPARRDLMRGL
IEMAASAGAETVVEGVETEAQAQVLSELGADVLQGFAFARPMDQERFLLWAQDWNAARQMPKTG
>gi|99081997|ref|YP_614151.1| hypothetical protein TM1040_2157 [Ruegeria sp. TM1040]
MSHEIDSGEVLATVEASPARRVIGVAMLIGLGLMTLYVAMASTPGVAWQGFLMLVSGLALWMGYRMWHAT
AHRIELTAAGLRCSDGTEIIRIQDLQHLDRGFFAFKPSNGFLMRSTTSAERCWYPGLWWRMGRRIGVGGV
TPGSQTKTMTEILAALMVERDAG
>gi|99081998|ref|YP_614152.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MHTFTQIDLASGLWEIFGKIRKNMSETTGKESSFSADTHSAVLDEGEKQRIRLELGRRVKGLRSAAGMTL
EQAAERTRLAVSTIYKIENGKVSPSFENLLRLARGYGVGLEKLIAEPEDEVHTTRLTVTRAGQGRSVEGK
VYDYEVLCNGLTGKKIIPLIGTICAKGEGVPAHLDRHDGEELLLVLEGEVELRVEHYEPVILAAGDCAYY
DSTLRHGVRSTGPDKARVFWACTHLGALS
>gi|99081999|ref|YP_614153.1| Na+/H+ antiporter NhaC [Ruegeria sp. TM1040]
MPLQKTDIRPSIGLALLPIVLTLAILGVQIFYFGDFTPHIPLAIGIALTAVVGLIEGLSWDEIEKGAFHV
IAVSFPAVSVLILVGMIVGTWIASGTVPTLIYYGLSLLSPELFLAAGMILCSIVSLALGTSWGTVGTVGL
ALMGIGEGFGIPAYWTAGAVVSGAFFGDKISPLSDTTNLAPAVTDTQLFDHIRNMLPTTVPAMLIALAIY
TVMGFNLGDGAPSFERIESFKGALEGSFDITPWLLLPALLVVGLAMMRMPAIPTLFIGVVVASLIAIFVQ
GASLHDVFTYANYGYSVETGVAAMDSLMNRGGIQSMMWTISLILIALGFGGALERTGCLAAIIELLTKRV
KTIAGVQTSAILSSMATNTVAGDPYLSIALPGRMFKPVYDRIGYSRLNLARATEEGGTIISPLIPWNAGG
AFVISALALGVSDGKIENLLYIPLSFACWLAPVFGIFYAWTGLFTPKAEAADTVRAEAAQHPAE
>gi|99082000|ref|YP_614154.1| Pirin-like [Ruegeria sp. TM1040]
MSLRPILEKRSAQPTMEGAGVHLHRAFGFQDPSELDPFLLFDDFRNDHPELYQQGFPWHPHRGIETITYV
LAGSVDHGDSLGNTGTLGAGDVQWMTAGSGILHQEMPSGNQKGQMHGFQLWGNLPSAQKMTAPRYQDVQG
KDIPEVIDDDGTRVKVIVGEFWGKRGPVDGIAADPQYLDVYVPAGVKKTFKIDTYRRAFAYIFEGQAAFA
DASQPQGVLLEKEVAGQEVNIRDLSGDRTLVRFGTGEEITVQAGPEGVRFLLISGAPIEEPVAWHGPIVM
NTQAELQKAFSELRNGTFIKPAH
>gi|99082001|ref|YP_614155.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MELKDLKSGRLHATEPVQMTAADREALFAPEVVAFLPPGFQNLGSDAARRHLIDALQQEAEVVALSAQDQ
EIVGLVILSFAHDAAGQRNLGYLFTRRAWGQGYASEMLRALQDQLRGTHVVLSGGVMAENAASARVLEKC
GFEPGEKTASGEMTYVWDAAQG
>gi|99082002|ref|YP_614156.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MPLLSEHMFRYSVYMARTQGSHSDITGPRIRAAAQELFARHGYAAVSMRQIAGAVGVQAGALYNYTADKQ
SLLFDLMQAHMEGLLTAWAAEDLPEDVMGQLERFVRFHIRYNLERPDAVFIAYMELRNLTDENFARIEER
RRTYENQLEGILKAGVTQGLFQVPDTKIAALAVIAMLNGVLTWYRDGGRLSLVEVETLYWDMVRKSVGV
>gi|99082003|ref|YP_614157.1| hypothetical protein TM1040_2163 [Ruegeria sp. TM1040]
MTATPAARLFFAPTPRSTRLGVLLACTLLSLATACSRVPELEDRLPADLRSQPYPDLLPLETALSDEPLP
EDESAALSEALDARAEGLRRRAEELRRRQF
>gi|99082004|ref|YP_614158.1| homoserine dehydrogenase [Ruegeria sp. TM1040]
MTEPLRLGIAGLGTVGIGVVKIIRRHAALLEARTGRPVVITAVSARDATKDRGVSLKDYAWETDPVALAT
RDDVDVFVELMGGHEGPARLATEAALAAGKDVVTANKALLAIHGQDLAERAEANGSVIRFEAAVAGGIPV
IKSMTESLAGNEITRVMGVMNGTCNYILTQMEATGRGYNALFEECGKLGYLEADPLLDVGGIDAGHKLAL
LASIAFGTKPAFDDVKLEGIQRIAIEDIRHAADMGYRIKLLGVAQRSARGLEQRMTPCLVPANSPLGQLE
GGTNMVVIEGDAIEQVVLRGPGAGEGPTASAVMGDVLDIARGLRISTFGQPATTLSKEPAAQTGLPAPYY
VRMALQDKPGALAKVAAALGDAGVSIHRMRQYDHATTVAPVLIVTHKCTSAMLEQALEALAATGVVEGAP
VALRIEEL
>gi|99082005|ref|YP_614159.1| fructose 1,6-bisphosphatase II [Ruegeria sp. TM1040]
MTSTTADAPFHDRLLSLGLARVAEQAALASAPLIGRGDEKAADQAAVNAMREQLNLLDIAGVVVIGEGER
DEAPMLYIGEEVGTGNGPGVDIALDPLEGTTLTAKDMPNALTVIAMGPRGSMLHAPDTYMDKLAVGPGYP
EGVVSLDMSPRERVEALAKAKGCTPADITVCILERPRHEAMIAEVRETGASIRLITDGDVAGVMHCAEAE
VTGIDMYMGQGGAPEGVLAAAALKCMGGQIFGRLLFRNDDEKARAAKAGITDLDRVYSRDEMVTQDVIFA
ATGVTGGSLLPRIKREPGWVETTTLLMRSKTGSVRRMSYRTPLSAHQ
>gi|99082006|ref|YP_614160.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria sp. TM1040]
MGKDEGRVPRGSGLFYTEDEGIELSFLGVETSLTGRRWVGPGVDQARASEHLAQETGLPPAVCQVLARRG
VPAHEATGFLTPQLKDLLPDPRRMKDMETAAARFLQAVERRERIAIFADYDVDGGSSAALLLVYLRQMGQ
QATLYIPDRIDEGYGPNDAAMAALARDHDLIICVDCGTLSHGPIAAAKGADVVVLDHHLGGETLPDCVAV
VNPNRQDEDGDLGYFCAAGVVFLMLVEVRRQARDKGLGAGPDLMAMLDLVALATVADVAPLIGANRALVR
QGLKVMGRRQRPGLVALADVSRMDAAPSTYHLGFLLGPRVNAGGRIGKADLGARLLSTDDPHEAAALSER
LDQLNTERRDIENAVRAAALEQAEARGFDAPLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGLDGEEG
KGSGRSVSGIDLGASIQKVAMEGLLLKGGGHKMAAGLTVARGQLEPAMARLAELLDKQGAGDLGPADLKL
DGMLMPGAASVELIEQIEQAGPFGAGAPAPRYGFPDVAVRFAKRVGESHLKVSFTDGMGGNIDAIAFGAF
DTNLGPRLLEHGGARFHVSGRLEVNTWGGRQSAQLRLEDAAEA
>gi|99082007|ref|YP_614161.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MPSDLPAFMPDRRSDVPIFEQICTALRSRIRSGALATGARLPATRALAGDLGVARATVVTAYEQLVAEGY
LMARRGSGYTVCAMGEVELPAKGTPTPPADLSERGDLLLEAGQPDMRLFPHRAWAKAVARLCRTRPEDML
MGCGRFGHPDLRQAIAAHVNDWRGIAARPDQVLVTSGATEALDVCLAALASSTGAVGVEDPGYPPIRRFA
QAQGRRIRDLALDSQGAEVPTTGDGTDVVVLTPSHQYPLGGAMSAGRRQEFVRWAAQSQGWIIEDDYDSE
FRYAGRPIPALAGVDGQGRTVYIGSFSKIFSNSLRMGYIVAPEALVERLVRAMRRKGARASAMPQAALAE
FMQHGEFYRHLRRVRRIYAERHRTLIARLRSDFSDVGHVEDYQAGMQVVLHLRPEICDQTVTTAARAAGV
GAEALSSYSRRAGAFNGVVLGACLNDLDEQAEALSRLRATISSTG
>gi|99082008|ref|YP_614162.1| molydopterin dinucleotide-binding region [Ruegeria sp. TM1040]
MSRQARSSQDTRVVPSVCPLDCPDTCSLSVEVTGDQITAVRGSNANPFTAGVVCNKVTRAYPDFVHGPAR
LTHPLRRVGPRGAGTFERISWEDALDLVVEGFHAAIDAHGAQSILPLNYAGPHGELAGGSLDRRFFYRLG
ATRMDRGPLCGGVRSLAYESLYGNAPGMPPEQAQHADLIVVWGNNVTVSNLHLTRIVKAARAKGARLVVI
DPKRIKIAEQADLYLQVRPGTDVVLAHALAAELERRGAFDAEFIAHWVHGVDEYMDEARKHSVENASEIC
GLAVSDILKLADWMQTAQRLATSTGNGMERGRSGGSGLRAAMALNALLGQHGRLGAGVVAKSGLASPKTR
ARLQGDHLIDPETRVVNILDVAQLMLDREQSTPINAVMIYNHNPVATHPDQTRMIAALSQPEIFTVGCDV
VMTDSMAYCDVILPAATHFEHDEIFAAYGQNYVQRAEPVIAPIAESLPNTEIFRRLAARFGYIEPEHQAS
DVQLMDDAMDASHPQFEGRPPSQMPVDRALEMQKSDGAALVLCETVTPDTETGRIELFSAALEAETGFGV
PRYDPVSQDLPLVLITPSSDKRINATFGSAPLSAGPESIEVHPEDAAARGLQDGDLVEVANARGSVTFRL
KISDAMQRGVTYAPKGTWRISSKTGLTANALIPVEVRTDIGDGACYNETFVELRAYAGVRAAE
>gi|99082009|ref|YP_614163.1| diguanylate cyclase [Ruegeria sp. TM1040]
MMTFEQLTGLADQLCPMHVIIDADGLIVSHGPTLDKIRGDNGWLGKPVLEVLDLQRPRSVKAVADLMNTA
GSKLHFQLHDAPHTRMKGVLVPLPKGRGAFINLSFGISVLDAVRDFNLTSQDFSPTDLTIEMLYLVEAKS
AAMEASRQLNLRLQGAKIAAEEQAFTDTLTGLKNRRAMDHVLNRLISGGRDFALMNVDLDFFKSVNDTYG
HAAGDAVLQRVASIMVECTRKSDTVARIGGDEFVLVFEGLMDRNRINDLACRLIERLEEPIMYGADECRI
SASAGTTLSTDVAQPLPATLLHQADLALYASKRAGKAQHMFYTPSLEDEMDLVEQNSKSA
>gi|99082010|ref|YP_614164.1| hypothetical protein TM1040_2170 [Ruegeria sp. TM1040]
MHGLINRAVQAFVTSTYGDKRWADIMDESGLGFTEFEAMLVYPEDQSIRMLRAVEAKLERPLDEILEDVG
TFLVSNPQVEALRRLLRFGGVNYVEFLHSLDDLPDRARLAVSDLHLPGLELIEQAPGQFQLLCQPGVPGY
AQVMTGVLRAMADDYGALVILDLVGEQEGSDVISITLVESDFSEGRAFELGAHTL
>gi|99082011|ref|YP_614165.1| trimethylamine methyltransferase [Ruegeria sp. TM1040]
MSQTQARRRRGGGRAGAAARRGAATLEQMPWKPPVNIDRPVEPLTAEGIAAIHDGAMRILEEIGVEFLND
EALEIFKEAGLKVDGALVRMDREFVMEMVGKVPSEFTLTPRNPERAIRIGGNSIVFGNVSSPPNYWDMDL
NKKVPGTREHCQNLLKLTQYFNCIHFAGGYPVEPVDLHASIRHLDVLYDKLTLTDKVMHAYSLGKERVED
VMEMVRIAGGLSHEEFDSQPHMYTNINSTSPLKHDEPMIDGALRLVRRGQPVIVSPFTLAGAMAPVTMAG
AVAQSLAEALCAIALFQYVRPGTPCAIGTFTSNVDMKSGAPAFGTPEYMRATQMTGQMARFYGLPMRSSG
VCAANVPDGQAMWETSNSLWAAVQSGTNMVYHAAGWLEGGLIASPEKFIMDCEVLQMIQRYMDPVINATG
PEEIALDAIREVGNDGHFFGIQHTQDRYATAFYQPFLSDWHNYEAWEAAGGTWTAQRANGLFKQIINEFE
APTLDEGIREELQAFVARRKEEGGAPTDF
>gi|99082012|ref|YP_614166.1| HAD family hydrolase [Ruegeria sp. TM1040]
MTLSALLFDKDGTLFDFAQTWNGWALGMLTELAGEDTGRLGAMAEAVRYDLTERAFHPDSLVIAGTNDEV
AEVLSPHVPQMSETDLEQYLIRTAGEAELAQAVPLAPFLSDLRASGLKLGVMTNDGAHSAQRHLTRSGVY
DQFDMVIGADSGFGSKPDPDPLLAFCSHVGVAPGATAMVGDSRHDLIAGRAAGMRTIGVLTGLARAEDLA
DLADVVLPNIGHIPDWLAQA
>gi|99082013|ref|YP_614167.1| hypothetical protein TM1040_2173 [Ruegeria sp. TM1040]
MPFSADRAEVLGLKALTWLAGNEELLPIFLGSSGASLSDLRDRVNDPEFLGAVLDFLLMDDSWVMAFCDH
EGVPYPSLVEARATLPGGEQVHWT
>gi|99082014|ref|YP_614168.1| response regulator receiver modulated diguanylate cyclase [Ruegeria sp. TM1040]
MQGTILVIDGVSTNRIILKVQLTAACFQVLQADSLSAAMALMKDNRPDLVLTAMTLPDGDAADVKRALDR
VRHGVGVPVIALCPQNDRGTRIMALSAGIDEVLPLPVDDMILQARIRSLLRMRMQDDELHLREEGVAAFS
VPLKDTTAVQITQSDATVALVCHDLQTAQKWKSRLSASVDFRLKAYNVDAIQDLMRTPVPDVIVIELNEH
SAGMALRLLADLRARISTRDSVVIAVPNPADASIAAEALDRGAHDVLHCGFQVDELALRITAQLAHQQRA
EMIRNTLRDGYRAAMRDPMTGLYNRRYARPFLEQVTQDAQSAGSNFAVMVADLDHFKRINDAYGHPVGDA
VLIEAARRLQAELRGCDLLARIGGEEFMLVLPDLHPDEASTVANRLCRAISGSPFVVKGCAQPLEVTISV
GAVVAQHGTQPLSADDLFVAADRTLYEAKHAGRNQAAIKGLTQSAAA
>gi|99082015|ref|YP_614169.1| hypothetical protein TM1040_2175 [Ruegeria sp. TM1040]
MIHTAEPKGISRMPRWLKAVFALSLAGNLAVVGIMVGAALREGRPGPHRHKAPPPAAADAIGAVMYRSFD
DAERRALRRLASGKHGDIVERRLAELNVLLEVIQQDPLDADRLRAEIDAQSQSAQAFRSSMHEVWIAELQ
KMTPAERAGFAEKVRDHIARFRKPREDRP
>gi|99082016|ref|YP_614170.1| hypothetical protein TM1040_2176 [Ruegeria sp. TM1040]
MGNKLNSQTEIDDLDALFAEARATRPEVPASLMESILADAADAQAGHLSSTATEPPRRGPIEVLIAALGG
WPSLGGLVAASCVGLWVGINAPDLMLETPGLQTLARTGSETTDYAAYETFDLATVLAEDLQ
>gi|99082017|ref|YP_614171.1| RNA polymerase sigma factor [Ruegeria sp. TM1040]
MTAETGVDRAHGATRATFVEPALSDEALLIRFGNGDPSAATELTRRLAPRVLSLATRVLGNRAEAEDVTQ
EAMLRLWKIAPDWRNGEARVSTWLYRVGMNLCIDHKRRVRGGHVDLDAIPEPPDPAAGAAEALQEGARRD
ALQDALMTLPERQRQAVVLRHIEELTNPEIAGVMEISVEAVESLTARGKRALAAALAGRREELGYQDG
>gi|99082018|ref|YP_614172.1| hypothetical protein TM1040_2178 [Ruegeria sp. TM1040]
MKKQILIASLLTLTTALAGGQVLAKQGFGPRHEKPTFEQLDANGDGALTQDELAARGQARFAEADQNGDG
VLSADELNARAQERMARRTAKMIERFDTDGDGGLSAEEMPRRHGAINLLEKADTDGNGSISKAEFDTAQA
IVEEIRKRQHHRGGPEKHRAGAGQDSE
>gi|99082019|ref|YP_614173.1| hypothetical protein TM1040_2179 [Ruegeria sp. TM1040]
MTDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHHHRADDGPAYL
TILIVGHLMAPLMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVVVAYQWARRMHGFDKTPKEKT
SAA
>gi|99082020|ref|YP_614174.1| NUDIX hydrolase [Ruegeria sp. TM1040]
MAATGASDTSIDKTTIRDAATVIVVRDSKSDDPKVLMGQRGAKAAFMPNKFVFPGGAMDLGDREIALAGD
IGAPCRNRLQEDGGAEVWRALCVAAARELWEETGLILGQPGYWPAEVPKDWQSFAATGHVPDASALTFVF
RALTPPGRPRRFDARFFLLKAEDLRGDLDDFSRASDELSHLQWIPLSQVRSFDLPFITEVVLAEVTANLR
HESPPESTPFFRNDDEESLFLRLHGRPMSQAD
>gi|99082021|ref|YP_614175.1| hypothetical protein TM1040_2181 [Ruegeria sp. TM1040]
MPLWIPVTLAAASFQTVRFMLQKVLSSVTLSAAGATFSRFVYSAPLILLLLWAYVGATGAELPALSAAFW
GFAIIGGLSQILATVCVVALFKERNFAVGITFKKTEVIQTAIVGLVILGDEVSPLGWVAILIGLVAVLVL
SKTKDGPKGLWGQLTGRAPLLGLGSGVLFAFSAVSYRGASLELQEPDAVLRAAVTLGVVVCLQTAMMLVW
LLSRDPGEILRVWDARRVAVWVGLTSMGGSFCWFLAFTLQNAAYVKALGQVELLLSLLASLLVFKEEVTR
REIIGMALLVLSILALILAL
>gi|99082022|ref|YP_614176.1| fatty acid desaturase [Ruegeria sp. TM1040]
MLEVPPAIDVAEAEARAVLPKHPEWGTFLLIVACYLLWAGALFGLAQVSQALAVVAAGLMVALHSSLCHE
VLHGHPFARRALNEALVFLPLNLCVPYGRFRDTHLAHHQDENLTDPYDDPESNFMDPEIWARLPKWRQSL
LRVNNTLLGRILLGPMIGQICFMQTDWRLARNGVCGIGRDWLLHGIGILLVLGIVSLSEMSVLAYLGAAY
IGLALLKIRTYLEHRAHEDMHGRTAIVEGRGVLGWILSFLFLNNNLHIVHHLYPGVPWHRLPRLYRQHRA
RFQDRNDGYVLPSYASVFRQFAFRAKDPVPHPLWKSSE
>gi|99082023|ref|YP_614177.1| hypothetical protein TM1040_2183 [Ruegeria sp. TM1040]
METRGRSLVKAIVWNVIGLISMTAVGFIATGSLSAGGMMAGINTALGFLSYLIYERVWAGIRWGRHHA
>gi|99082024|ref|YP_614178.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MTDKIDKRLRAVQFRDRLERALRDSGLSQSALARATGVDRSTISQLLTDDGARLPNAHVIGACAEALGVS
ADWLLSLSERPESAAELLASSIAMTEAPRALVDERIYEWHREAAGYKIRHVPATLPDMLKTRAVLEWEYA
PHLGRTADQAIGASEDRLTWMRQAGSDYEIALPIYEVDSFAKGVGYYEGLSAEIRIEQLEHLERLTTQLY
PRLRVYLYDAKRLYSSPLTVFGPLLCVFYAGSHYMAFRDRARVETYTGHFDRLVREADITARQVPGRLRA
LRAQIGVAT
>gi|99082025|ref|YP_614179.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Ruegeria sp. TM1040]
MRVLVTAGASGIGRAMAEGFVATGAEVWVSDVDRDALAALPDGWNARQVDATDEVAMRALFAEIAQAGGL
DVLCANAGVAGPTALVEDIQLEDWRACVSVNLEGAFLAAKYAAPLMKAAGQGSIVLTSSTAGIYGYPNRA
PYAAAKWAVIGLMKTLAMELGPFGIRANAICPGAVEGPRMEGVLAREAALKGMSRDAVHEGYAAGTSMRT
WVTAEDVANMAVFLGSEASRRISGQVIAVDGHTENPDPKV
>gi|99082026|ref|YP_614180.1| bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase [Ruegeria sp. TM1040]
MTKTAAIIGGGVIGGGWAARFLLNGWDVRVFDPDPEAERKIGDVLANARRSLPGLGNVALPPEGSLSYHE
TLAETVQGVDWVQESVPERLDLKQKVYAELEAHAPGGAVIGSSTSGYKPSQLQDGFTNAAQIVVAHPFNP
VYLMPLVEVVTTDVNTPEMIAKAKAIITEIGMYPLHLKKEIDAHVADRFLEAVWREALWLVKDGIATTEE
IDNAIRYGFGIRWAQMGLFETYRVAGGEAGMKHFMAQFGPALSWPWTKLMDVPEYNDALVDLIAGQSDAQ
SGQYSIRELERIRDDNLVGMMRALGANNWGAGALQNAHDAARLSEAGLARSMEDVADLSQPILTQSRVVP
LDWTDYNGHMTESRYLDAFAQSTDRLMEIIGCDADYIASGGSYFTAETHIRHIDEVHAGHPVQVRTRVIM
GAGKKMHLWHEMYEGDRLLATGEHMLLHVDLKTRRSAPPAAHIEANLVKLAEAHAALPAPEGLGRAIGAP
R
>gi|99082027|ref|YP_614181.1| Lipocalin-like [Ruegeria sp. TM1040]
MIAVAFRSTLAATLVALTLAAPVQAAEYRDTDVAMTVQEDLDLSRYLGTWYEIARFPNRFEQGCAAVTAE
YSPLPKDRIKVVNSCRKGGVTGPLETVEGVARVAGPGKLEVNFVSWLRLLPFTWGDYWVLDVDADYQVAV
IGTPKGKQGWILARTPNISATELEAAKAVLRKNGYDTGALEMVPQN
>gi|99082028|ref|YP_614182.1| hypothetical protein TM1040_2188 [Ruegeria sp. TM1040]
MPLSMNREVFITCAVTGSGGTQDRSPHVPRSPKEIAESAIAAAKAGAAIVHCHVRDPETGAPSRDLGLYR
EVTDRIRESDTDVVLNLTAGMGGDIVFGGVERPLPVTEDGTDMIGASARVAHVAECLPEICTLDCGTMNF
AEADYVMTNTPGMLQAMGQMMTDLGVKPEIEAFDTGHLWYAKQLVKDGVLKSDALVQLCMGVPWGAPNDL
NTFMAMVNNVPDDWNWSAFSLGRDQMAYVAASVLAGGNVRVGLEDNLYLDKGVLAENWQLVERAGTIVSN
LGARVITPAEVREKLGLQKRAPITK
>gi|99082029|ref|YP_614183.1| transcriptional regulator [Ruegeria sp. TM1040]
MKSAKNILQPENRPLKTAVLVMDECNTLSFAAAVDPMRAANRLAGRAAFDWDYVSASAEPPMLTSGLTVP
TTPLARLDDCDLLIVVAGFQLARHATPSLLAGLRRIAGSGATIAGIDGGPWLMAEAGLLDGHAATTHWED
LENFSARFPDIHCRTDRFTVSEGRMTSGGATPAIEMMLHIIGARHGHGFASRVAGLFLYDGTASPQRSQS
RLGHHKHNALTAKANAIMEAALDDPKPLAEIAEVLGTSPRSLQQQFRLRLNTTPQDHYLQLRLAEARRLV
TDTNLPLMEIAVATGFTSQSTFARAFRTAHGLSARELRQNSAETAFASYPVLKATSHASHSTN
>gi|99082030|ref|YP_614184.1| aldo/keto reductase [Ruegeria sp. TM1040]
MKKNRLGRTDMMVTDLCLGTMTYGTQTDEADAHAQIDMALEAGINFLDTAEMYPVNPIRAETLGLSEEII
GNWNQKTGRRKDYILATKHSGEGSVARDGAPITGKTIAATVEASLKRLKTDYIDLYQFHWPNRGSYMFRK
NWSYDPTASSYNRAQVIADMEECLAALQAQVEKGNIRAFGLSNESAWGTAQWLRLAEEGKGPRVASIQNE
YSLLCRLYDTDLAELSHYEDVGLLSFSPLGAGYLTGKYQEGAVPEKSRKSINPEMGGRQSDRVEAAVAAY
LTIAADHGLDPVHMALGWCRTRPFMASAIFGATDVAQLAHILEGADLELAPEVLAQIDQAHRAHAMPY
>gi|99082031|ref|YP_614185.1| major facilitator transporter [Ruegeria sp. TM1040]
MRTILSFAALFLSVILLQLSTGGVGPLDAISGAAMGFDNRQIGLLGSAHFFGFFIGCWWTPRLMGRVGHS
RAFAVCTALGAMGLLAHTLTDDPYAWAAMRIASGLCVAGCYTVIEAWINAKVTNENRGRTSGLYRIADTS
ASLAAQLLIAVLPPAHYISYNLLAILCCATLLPLMMTRASQPEMPAAPRLRPRLAWRCSPLGVAGVIVSA
LSGASFRMVGPIYGQEVGLVIDQIAFFLAAFVLGGALAQYPVGWLADKFDRRWVLIWLSGVSMIACAVTL
PASGGGTIAIMASAAFFGLTTVPIFSVSAAHANDFATSEERVELSAALMFFYATGAIAAPFIASALIEAF
GPGALFVFIAVGHAGLIVFGLARMRSRATPTERTRYVYAPRTSFTIGKMLKRAREGRQ
>gi|99082032|ref|YP_614186.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MTELPPLNSLRAFDAAGRRLSFRAAADELGVTQGAVAQQVRQLEAHFDVVLFERVPKGLAFTPVGRSYHN
RIAGVFADLRAATAELKPEPNKVLISVTPTFAAKWLIPNLPDFATAHPNIDLRIMATEKVSSFHSDGIDL
AVRQGSPPFGASLDVTLLFKQSLVAVAAQKLADKGGTPLDPETLAKQPKVHDAHDLWPSYLAHLGVQDQS
ARHLRLSQTSLAVDAAIAGQGVALVSRFLVAHDLAAGRLVEVGEAWAPDRNDFYVLMPRTAKNNAPTTNV
LTWLKSRSAKDT
>gi|99082033|ref|YP_614187.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MTVEKVALITAGGSGMGANAARKLADDGFKVGILSSSGKGEALGGELGGFGVTGSNLDGEALNELVEGAK
DRWGRIDVLVNSAGHGPKGPVLEISDEDWHQGMEVYLMNVIRPTRLITPVMQAQGGGAIINISTFAAFEP
DPLFPTSGVFRAGLAAFTKLYSDKYASENIRMNNVLPGFIDSLPETEDRKARIPMGRYGFASEVSSLISW
LASENGGYMTGQNLCIDGGLTRAV
>gi|99082034|ref|YP_614188.1| hypothetical protein TM1040_2194 [Ruegeria sp. TM1040]
MPSDTLALVSTRERLVFAVKWGASAVQIMGYTATGFGWTPWNLYLFLFGVVGWFAVGALWNDKALMLVHL
VALGAMIAGMASG
>gi|99082035|ref|YP_614189.1| band 7 protein [Ruegeria sp. TM1040]
MDGSFLLVPVISILALVALIGLVLGRLYRRATREVSLVKTGSGGKKVIMDGGTVVVPLLHEISPVNMKTL
RLEVQRSGEAALITQDRMRVDVGVEFYVSVMATEEGISRAAQTLGDRTFDVEQLREMIEGKLIDGLRAVA
AQMTMDGLHENRADFVQEVQNAVSEDLLKNGLSLESVSLTALDQTPFEALDENNAFNAVGMRKLAEVIAT
SKKERAQIDAEAEVAVRRAAMEAERHKLLIEQDEQQARIEQMQKVETMRVAQEAEIAARTEDSVRETERA
RIAREEAIRAADIERERKIREAEITKERELEVAEQERQIIIAQKSEEESRARASADLARAEAIKATEAVA
TAREVAEAERQKQIVLIEAAREAERQATGIRLAAQAEKEAAADRAEARREEAQAEADALNIRAEAKKNDM
LAEAEGKRALVEADNALSPELVRMKVDLARIEAMPSIIAEMVKPAEKIDSIKIHQVGGVGGGAAYSSAGA
SGDKPVVNQALDSIMGMAVQMPALKTLGRELGISMEDGVSGVVNGMLEGNDIAPEVAADPEATDQAKTSE
VH
>gi|99082036|ref|YP_614190.1| hypothetical protein TM1040_2196 [Ruegeria sp. TM1040]
MEVLALLLGGSLLGGDSDADLDGPGGPELDADLDMGAVDLDALDSADLEALNFESVEGLEADTGSAAPDV
TGGGGVLSWLGIGRMPFLIWIGCLCLAFGLSGMALQLGARSLFQSFAPAGLVAIPSGVFGLWFTRGFGAV
FARILPQTETEAVSEGALGRRRGVITQGTAQRGRPAEVRVTDRYGNAHYLRAEPLSDQEKIAQGTEVLVI
RDRRSKRYVLVPLSE
>gi|161899027|ref|YP_614191.2| methionyl-tRNA synthetase [Ruegeria sp. TM1040]
MARILITSALPYINGIKHLGNLVGSQLPADLYARYNRGRGHEVMFLCATDEHGTPAELAAAKAGKPVADY
CAEMHAVQADIAKRFGLSFDHYGRSSSPQNHALTQHFAGKLEEAGLITEVSEKQVYSNADGRFLPDRYIE
GTCPNCGFEKARGDQCEECTKQLDPTDLINPRSAISGSTDLEVRETKHLFLRQSAMRDQLDQWIDSKTDW
PVLTTSIAKKWLHDGDGLQDRGITRDLDWGIAVKKGDADWPGMEGKVFYVWFDAPIEYIAAAGEWAEAHG
KTDADWERWWRTDKGADDVKYVQFMGKDNVPFHTLSFPATLLGSGEPWKMVDHLKSFNYLNYDGGQFSTS
QGRGVFMDQALEILPADYWRWWLLSHAPESSDSEFTWENFQQSVNKDLADVLGNFVSRITKFCRSKFGEE
VPDGGTWGEQEQTLIEELSTRIGAFERHMEAMEVRKSAQELRAIWVAGNEYLQSAAPWSVFKEDPERAAG
QVRLGLNLIRLYAVLSAPFIPDASDRLFAALGTEDRSWPEDVAAALAALPAGHAFTVPEVLFAKITDEQR
EEWQERFAGGRSA
>gi|99082038|ref|YP_614192.1| hypothetical protein TM1040_2198 [Ruegeria sp. TM1040]
MSNLKPISQADITAATQPETYPTYHAEDLTRGGVQARILLNGQIYSLRITRAGKLILTK
>gi|99082039|ref|YP_614193.1| imelysin [Ruegeria sp. TM1040]
MKTPLFTGAAVLALAAGTSAAFATSKGEVLINYANIAEAKYEDSLITAKTLQAAVGALIDAPSAETLAAA
KKAWLAARVPYQQTEVYRFGNAIVDDWEGKVNAWPLDEGLIDYVDASYGGPTDENAAAVLNVVANPDFSL
SGQAIDASEITPELLAETLHEADGVEANVATGYHAIEFLLWGQDLNGTEHGAGARAWTDYATGEDCTNGN
CDRRGAYLKAATDLLVSDLEWITAQWAEGGAARAEVLSDENAGITAILTGMGSLSYGEQAGERMRLGLML
NDPEEEHDCFSDNTHNSHYYDGLGIQNVYLGEYVRVNGALVSGAALADLVEAADPALNSELTAKLATTMM
KLGRIKTAAEAGFSYDQMLAQGSTAGEALVMGGVDALVDQTRSIERVVAALELDAVSIEGSDSLDDPSAV
FH
>gi|99082040|ref|YP_614194.1| putative bacterioferritin-associated ferredoxin [Ruegeria sp. TM1040]
MIICHCTAISDHDIHAAIDWMRASDPQTIITPGKIYRALGKQAECGGCMPLFLDTMRANAKVVVPAQLQN
LRTAISPESNYEGRPQSHRISQQGT
>gi|99082041|ref|YP_614195.1| Ferritin and Dps [Ruegeria sp. TM1040]
MAKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARALYKEAAEYCR
THGDFVSEELFKELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDEAE
>gi|99082042|ref|YP_614196.1| hypothetical protein TM1040_2202 [Ruegeria sp. TM1040]
MLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVERVTAPTEDFAAPEAFEENSAGTATLPHTDDRD
AFSQPPANLTFEQGLEFHLGEALFDKLWVFSPASTLASDGLGPVYNARACQRCHIRDGRGHLPEGPDYRS
ASTFLRISIPGPVPPHLRAIPDYIGMVPEPTYGWQLQDFSAPGVDPEYRLSVTFTEEEIALNGGEVAHLR
KPQFEASALKYGPLDSEAMLSPRVAPPMIGLGLLEAIPAADILALADPDDLDGDGISGRANLVWSKEFDQ
VMLGRFGLKAGTATIHEQSAAAFSGDIGISTPLFPQPYGDCTAQQVDCRAAPHGDEDLRGTEIDQPNMDL
VTFYSRNIAVPARRNLDAPEVLRGKSVFYEIGCTSCHTPKFVTHRLIDRPEQSFQLIWPYSDLLLHDMGE
GLADNRPEARATGREWRTAPLWGIGLTQQVSARATFLHDGRARTLLEAILWHGGEAQAARDRVVALPPAD
RAALISFLESL
>gi|99082043|ref|YP_614197.1| hypothetical protein TM1040_2203 [Ruegeria sp. TM1040]
MPLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSDCAPTSEAVRN
AWGAAFDAWVAASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNRSPVVDTPEDFATASVAVRGF
YALEYLFFDPAYADLGDPDYACAFVQAVARDLARNSAAILDDWEQDYADQLRTPAARYRSETEAHQELFK
ALTTGLEILADMRIGRPLGTFDAPKPNRAEARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVF
DKADRHADQLSDDPSLAGITDPQKRFLLETLQQDVFEIKEIALRDLGPKLGVEAGFNALDGD
>gi|99082044|ref|YP_614198.1| hypothetical protein TM1040_2204 [Ruegeria sp. TM1040]
MPSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPDRGHAASAHPT
RPEAVAFARRPGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVLYTTENDYARGAGVIGVWNAG
DYHRIGQFSSGGIGPHEMLLRRDAPGLVVANGGIETHPESGRAKLNIPFMRPNLSYLRLSGEIQHQMELP
ADLHKNSIRHIAVRSDGAVGFAMQWQGDLGADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGD
ETAIAVTSPRGGVVQVMDCTSGALQAEHALSDVCGLAPLKDGFLVSTGTGIMAQIGTEVTTLTQAPLAWD
NHLIALSSAASAPRQP
>gi|99082045|ref|YP_614199.1| DeoR family transcriptional regulator [Ruegeria sp. TM1040]
MDANDRQNEILSLLTQQDRVEVEDLAQRFGVSLQTVRTDLRDLSARGQLSRVHGGAMRISSASNRGYAER
RSLNATGKRAMAALAAEVIPENCSIALNIGTSTEQVARALSGHKGLTVLSNNINIINMMMEMETRDLILV
GGSIRQSDGAIVGEEAVEFINRYKVDYAVIGASAMDADGAILDHDAREVSVARAILKNARTRILMCDGSK
FDRSAPVRICALAELDLVITDRPVPAEFAEAAEAAGTRILIADGGAENESSAND
>gi|99082046|ref|YP_614200.1| glycerol-3-phosphate dehydrogenase [Ruegeria sp. TM1040]
MTDSSQSTEITDLFIIGGGINGCGIARDAAGRGLSVTLAEKNDLASATSSASTKLFHGGLRYLEYFEFRL
VQEALIEREVLLRAMPHISWPMRFVLPFHKDMRFDNTTPTSKLLTTFMPWMKGRRPAWLIRLGLFMYDTL
GKRGILPGTTTVDLTRDEAGKPLQSKFKKAFEYSDCWVEDARLVVLNARDAESRGTEILTRTEVINATRH
ADHWEIRLRDLATGEEETRRAKMLVNAGGPWVADVLRQKLGQNSRENVRLVRGSHIVVPKLYDHGRCYFF
QGQDGRIIFAIPYEEDFTLIGTTDADHPDPETKPVCTEEEQDYLVRFASNYFERPVTREQIVWTYSGVRP
LYDDGASSASAATREYVLTLDTAQAPLLNVFGGKITTYRKLAEAALEKINEVFPELPEKWTAGVALPGGD
FPVEGVTELGAKLAQDYPFLTPYAVRRLIRAYGTEAWDVLGDATTPSDLGEDFGATITARELDWTIQNEW
VRSGEDYLWRRTKLGLRLDADARGAVNRYIEARITG
>gi|99082047|ref|YP_614201.1| cob(I)yrinic acid a,c-diamide adenosyltransferase [Ruegeria sp. TM1040]
MGKPWVRPARSKTVSDQTSQKSETGISEEEAARHASKMAKKKAARDRMMKTKDGEKGLIIVHTGPGKGKS
SSGFGMIMRCIAHGMPSAVVQFIKGAWQTGERTLIEENFSDLCQFYAMGEGFTWETQDKARDIAAARAGW
EKAKEMILDEKNTMVLLDEINIALRYEYLDLEEVLEFLVEHKPAMTHVVLTGRNAKEELIEIADLVTEMT
QVKHPFRAGIKAQKGVEF
>gi|99082048|ref|YP_614202.1| hypothetical protein TM1040_2208 [Ruegeria sp. TM1040]
MGEIPNQSPDDQSPEDQGPEPVVLTVCTTCRPEGSDPEAPRPGRILADRLAGSALPEGVTVRGVECLSAC
KRSCTLHLSGGPARWGYIYGDLDPDAHLDEILAGATAYASTEDGFVPWRERPVVFRKQSIARIPPVSMPS
VALTPTQAPGAQTEDTPDTPALQSAKD
>gi|99082049|ref|YP_614203.1| cobalamin (vitamin B12) biosynthesis CobW [Ruegeria sp. TM1040]
MTSLNKIPVTVITGFLGAGKTTLIRHLMQNPQGKRLAVVVNEFGTAGVDGDILKSCADDNCPAENIMELA
NGCICCTVADDFIPTIESLMALPEPPEHIVIETSGLALPKPLLKAFDWPAIRSRITVDGVIALADAEAVA
KGQFAPDLDAVQAQREADESLDHETPLSEVFEDQIACADIVLLSKADLAGEAGVDKARAIIESEAPRKLP
ILPMTEGVIDPRVILGLEAAAEDDLDARPSHHDGHHDHEHDDFESIVVEMGEVSDPEDLQKRIIEMARSR
NILRVKGYVAVEGKPMRMLVQAVGERLRAQYDQPWGAQERKTQLVVIAEHDNVDTAGIHADLGA
>gi|99082050|ref|YP_614204.1| cobaltochelatase subunit CobN [Ruegeria sp. TM1040]
MHVVFRESHGLGETDTPYDVGQTPGDLVVLSFSDSDLGAFAAGWHRAAGKLPSTRLANLVALKHPLSVDV
YAEQTLEGAKGVLVRLIGGESYWSYGLATLQDLARRKGIALAVLPADGQEDPRLDELSTLPISTLRRLQA
LCDAGGAVAAQAALAQLALASGLYASPVIGQKTVPDFGYYDPDDGALSALPKTHKPLVLVTFYRSYLTSA
DTAPIDEILRGLRARGYAAFGAFAPSLKAPAAVQWLRAELSQRAPVAIINATAFSAQGRDGSASPLSLVG
CPVFQVALSTARRKDWDLADRGLSPADLAMHVVLPEVDGRLFAGVVSFKAPTKRDPDLQYSRFTHRADPE
RISAALDRIEAHLRLARQTRAETRLALVLSTYPGRDYNLAHAVGLDALASTSEILSALARDGYDVAPEAD
LGARLSDHTLTWPLSDYIAALHKLPEALRDDLKAAWGAPEQDPAVRDRVCHFRALRAGKALIALQPERGD
VQARDDDYHDLERTPRHGYVAFYLWLREQVDALVHVGAHGTLEWLPGKAVALSGACWPEVLAGDLPVIYP
FIVNDPGEAAQAKRRIGALTLGHMPPPLAETTLPAGMGRLESLLDEYSTADGLDPARRDRLIADIRAEAQ
GTGVEEDLGIPTEASAAEAITRIDRFVCDIKESQYGEGLHVFGRGAHGAEEMQGLLRALRGKLVAPGPSG
SPYRGRSDVMPTGRNLFTTDPRAVPSRAAQAQGVKLAEELLRRHLQDHGDWPSGLVVDLWGSATMRTAGE
EFAMALHLAGLAPKWDEGSERVSGFEIIPLALLGRPRIDVTLRVSGLFRDVFPGLAQMFEAAAAALGARE
EDPGDNPYLQTTPRVFGPKPGLYGLGMTQHLDDYSDEARAAAGEAWLAASSHSIDAKGEITEARDALEKR
LRNADSFVHLQDLAETDVLVASDYAAHEAGFAAAMKRLGAKAPSLYHMDATRMDRPQARSLQEEIARVTR
ARAADPHWATSMMNHGFRGAAEIAATLDHMAAFAHLAQVVPAHLFDLYFEATLGREDLVAFLERENPAAL
QAMWDRFRALRDAGLWVTRRNFILASLEGAA
>gi|99082051|ref|YP_614205.1| precorrin-3B synthase [Ruegeria sp. TM1040]
MSAPAPKVYGWCPGALRPMMSGDGLVVRIRAPMGRLSPEQAGAVAELSARYGNGLLDLSARANLQMRGIQ
ENDHPNLIAALQDLGLVEADANAEARRNILLTPFWRSGDRSHQIAQRLAALLSDATTLDLPGKFGFAVDA
GEAPVLQATAADIRIEGDGDRLMLRADGADVALEVTETEAAAQALALARWFLEQGGASEGRGRMHALISR
RGAPDTHGADVAKGAPLPAPGLTRNGALVALEFGQIHATTLAALAKHGALRLTPWRMLLVEDARDITPLP
DLILGATDPRLHVSVCTGAPGCLQALSQTRDLARDLAPHLQAGTHLHVSGCAKGCAHPRPADVTLTATGT
DRFDLIRKGRASDAPLRSDLTARTLRAAPHILTKDT
>gi|99082052|ref|YP_614206.1| precorrin-8X methylmutase [Ruegeria sp. TM1040]
MLHTYETDGAKIYAESFATIRAEANLARFTKDEEVVAVRMIHAAGMVGLEEHVRFSEGMAKTARAALADG
APILCDAYMVSEGITRPRLPADNEVICTLRDPKVPEMAREMGNTRSAAALELWRPKLDGAVVAIGNAPTA
LFHLLNMLKDPACPRPAAIIGCPVGFVGARESKDALMEDLPVPSMIVEGRLGGSAITVAAVNALASWKE
>gi|99082053|ref|YP_614207.1| precorrin-2 C20-methyltransferase [Ruegeria sp. TM1040]
MNVPKAGKVICAGLGPGDPELMSVKSWRALQGATHVAYFRKAGRAGQARAIVEGLLPAGVTEYPMEYPVT
TEIHFSDPEYNRQLAAFYDQWADTLAEIAATQTVVVLCEGDPFLYGSFMHLHTRLEGRAEVEIIPGITGM
SGCWTATGQPITWGDDVLTVAMATLSEDELTQRIRQTDALVVMKIGRNLPKLRRALEAAGRLQDAWLVER
GTMPAQTVQKLTDVDGEVPYFSIVILHGEGRRP
>gi|99082054|ref|YP_614208.1| precorrin-3 methyltransferase [Ruegeria sp. TM1040]
MNDTPKGWVVIAGLGPGAESMVIPEVQDVLAEATDVVGYIPYVKRIPPRAGLTLHASDNRVEVDRATQAL
EMAAAGQRVVVVSSGDPGVFAMASAVFEALEEGAKTQPAWLNLEIRVLPGITAMLAAAAAIGAPLGHDFA
AINLSDNLKPWELIERRLQLVGEAGLAMAFYNPRSKSRPHQFERALEVLRAACGDDTLISFARDVTKPGQ
EILTVPLRDARPEMADMRTVVIVGNRDTRRVGSYVYTPRFAPGHQPGHQPAYHTAANTATKDA
>gi|99082055|ref|YP_614209.1| precorrin-6A reductase [Ruegeria sp. TM1040]
MRKLLLLGGTTEASRLAQHLAQSWVRDDPVAGRQAVFSYAGRTARPAQQPLPCRIGGFGGVPGLVAYLER
EEITHVVDATHPFAAQMSLNATQACAEVGVPLVAFERPAWQPHPGDHWTHVRDMAGAVAALPEAGARVFL
AIGKQHVAAFAVKPENHYLLRLVDAPEDALSLPKATVVVARGPFDAAGDEALMRSHRITHVVAKNAGGAG
AEAKLSAARSLALPVIMIDRPEGPAREVLGSVAEVMRWLDHGA
>gi|99082056|ref|YP_614210.1| precorrin-6y C5,15-methyltransferase, subunit CbiE [Ruegeria sp. TM1040]
MPFSTAPVLAARGRPTVVLASGDPFWHGAGGSLLRDLERSEWVSHPAPSCFALAANALGWKLEDTLCLGL
HAAPFARLRPLLEAGQRVLCTLRDGAAAAELAAYLCEIGFGASSLTALERLGGPHARIRHTTAAGFDLPE
VDAPVLAAIDARGQGLPQASGLEDTLFASDGQITKRPVRALTLSALAPRRGAHLWDIGGGSGSVSVEWCL
AAQGATATTFEARADRLENIRRNRRDFGLEHRLTPVEGRAPDVLKNQPLPDCVFIGGGGSEALLNYLWQI
LPQGTRLVANGVTLETETLLMQAHARLGGHLLKVEIAEAGPLGTLRGWERARPVIQWSVTR
>gi|99082057|ref|YP_614211.1| putative precorrin methylase [Ruegeria sp. TM1040]
MIVAGFGFSNRASEASFAEAFAALDRRPDWVAVLRNKAKSPVFRAFALAEGLRVEPLEEYQISGAQTPTL
SPRIHARFDTGSVAEACALVAAGKHARLIQRRFVTTDGLATVALAETIAR
>gi|99082058|ref|YP_614212.1| precorrin-4 C11-methyltransferase [Ruegeria sp. TM1040]
MTVHFIGAGPGAADLITLRGRDLIAACPVCLYAGSLVPEALLSHCPEGAKIINTAPLSLDEIMAEIASAH
AQGHDIARLHSGDLSVWSAMGEQLRRLRDLDIPYDITPGVPAFAAGAAALGTELTLPGVAQSLVLTRTSG
RASAMPEGETLENFAATGATLAIHLSVHVLDDVVARLTPAYGADCPVAIVWRASWPDQKIVKATLGTVIE
ATDGARGRTSLILVGRALGAEDFAESCLYGAEYDRRYRPQSADSPWSEWSEGDD
>gi|99082059|ref|YP_614213.1| cobyrinic acid a,c-diamide synthase [Ruegeria sp. TM1040]
MIPFPKGLMISAPSSGTGKTTVMLGLLRALKDDGLTVQPFKSGPDYIDPAFHLAAARRASFNLDTWAMDD
TLLDAVTTQAQGAGICVGEGSMGLFDGVATRGQSGFGSSAETALRMGWPVVLVIDVGGQAQSAAATALGF
KMYNPDLPFAGVILNRVASPRHDRLTRLGMERAGVKVLGSLPRRGDLALPERHLGLIQAVEHPDLEAAIA
GYAAFLRENVDIDAIRAVASSAAAPAPRALPRPPAQRIALARDAAFSFTYPHLLEGWRAAGAEILPFSPL
NNEAPAKDADLVWLPGGYPELHGSTLAAADIWRKGMAEHAKTKPVHGECGGYMALGEALIDKDGTRHQMA
GLLGLVTSYEKRKFHLGYRRAALEAPMPGFDSGAFLRGHEFHYSTILDEPDAPLARVMDADGNPVPETGS
VKGHVTGTFFHLITGEQP
>gi|99082060|ref|YP_614214.1| uroporphyrin-III C-methyltransferase [Ruegeria sp. TM1040]
MSGFVSFVSSGPGDPELLTLKAVKRLEAADAVLFDDLSSGPILSHARADADMVGVGKRAGRPSPKQDHVS
QLLVEYAQSGAHVVRLKSGDSGVFGRLEEEMVALRAAGIKYEIIPGVTAASAAAAAAGIPLTRRLTARRL
QFITGHDVTGGLPEHMNLTALADPEATTVVYMGKRTFATLLELLLEAGLPETTPALVALGVSTPAQELHR
VTVAALPDLLEAIISPAPVLILYGPLADDDALVSQ
>gi|99082061|ref|YP_614215.1| hypothetical protein TM1040_2221 [Ruegeria sp. TM1040]
MTAPVISLCRTCQDADPALLPQLAAALREAHPRALLQSVDCMSGCARPQTLSVRQSGKTAYLFGEITAAD
LPDILRFLRLYEASADGTFTDARPIGELRFKAIARIPAPLPETTAASQTGSAASPEE
>gi|99082062|ref|YP_614216.1| cobalt transporter subunit CbtA, putative [Ruegeria sp. TM1040]
MCRPPPCMMLRMMCATRPASPATKQMFARILTSALFAGAAAGLIAALLQLFFVQPVLLHAELYESGALVH
FGGETVSAHPELPGIFDEPMRNLLSILFTMLIYTGYALILVALMSVAERQGHEIRTGQGLLWGLAGFVAL
HFAPGFSLAPEVPGVAAADVGARQIWWAATVASAGVAMWLIAFGGNLVAYVVAALLLMAPHVIGAPEPET
FAGPVPTEIGALFAARALGIGMAAWALLGVFCAYFWQTEAAHADANT
>gi|99082063|ref|YP_614217.1| hypothetical protein TM1040_2223 [Ruegeria sp. TM1040]
MSRSLALFAIGLVFGGGIGFLTAAGNGVTLDGHDHSDPAHHGGGSGVATHDHSALVNSPSGPEAPSVEIH
VTPDAMSGWNLQVETKNFRFAPEHASGADQPGEGHAHVYVNGEKITRLYGSWLHLAALPEGETEVKVSLS
SNSHGTIAVDGVPVEARVVVSAP
>gi|99082064|ref|YP_614218.1| precorrin 6A synthase [Ruegeria sp. TM1040]
MLQLSLIGIGTGNPKHLTREAMEAICAQDLILIPNKGAGKDDLAGLRQAICADVLAGAASAPKIVEFDLP
VRDPATPDYRQRVEDWHDAIAEVWQATLAAHLPKGGQAGFLVWGDPSLYDSTMRIAERLGQRMEMQMRVI
PGITSVQALTAAHGVPLNRIGAPVQITTGRQLRDAGWPAGCDTLVIMLDGECSFQSVDRPEQVMIHWSAY
AGMENEINIAGRLSDVQDQILSVRARARRDHGWIMDIYMLERLR
>gi|99082065|ref|YP_614219.1| kynureninase [Ruegeria sp. TM1040]
MTNLPKKYLFDIPEGMIYLDGNSLGPLPKGAAERAAKVLTQEWGTQLIKAWNTADWMALPQKVGDRIAGF
IGAAPGSVATGDTLSIKVYQALAAALKMRPERRVILSDTGNFPTDLYMAQGLISTIGKDYELRTVAPEEV
ADAITDDVAVVMLTEVDYRSGRRHDMMEMTARAHQNGAVMIWDLAHSAGALPVDLTACNAEFAVGCTYKY
FNGGPGAPAFIYARPDIVLEVDPALAGWLGHDAPFAMEPDYRPAMTTERLRVGTPSIVQLSILDTALDVW
DGVSMEEIRGASVALCETFIAEVEARCPELTLASPREAALRGSQVSFAFEDGYAVVQALIDRGVIGDFRA
PNIMRFGFTPLYLDQADVVQAAEILEDVMKRESWKDPKYQVRSRVT
>gi|99082066|ref|YP_614220.1| tryptophan 2,3-dioxygenase [Ruegeria sp. TM1040]
MSDSAYNPGQDGAKMGFADAMSYGDYLHLDALLDQQHCKSDAHDEMLFIIQHQTSELWMKLALHELQAAR
EALQQGQTAEMFKMLARVSRIFEQLNSAWDVLRTMTPADYTRFREALGPSSGFQSYQYRLIEYVLGNRNP
NMLRPHEHVPEVHALLSAELARPSFYDEVNRYLFQTLDGHTENLPAPRLDAPHALDETIQERWLKVYGDI
DTYWTLYELAEKLVDLEDYFRRWRFNHVTTVERVIGFKRGTGGTSGVQYLRRMLSVELFPELWTLRGDL
>gi|99082067|ref|YP_614221.1| MCP methyltransferase, CheR-type [Ruegeria sp. TM1040]
MAKAELPVIIGIAASAGGLEATTSLVKNLPSQTNASYVVAQHMSPTHKSLLWSLIGRETELPVIELTDED
LVPEPDTIYIAPPNYDVIVDNGKLALRDPSGHPGTPKPLADRLFKSLADECGERCVGIVLSGTGSDGSYG
IRAIREAGGVTIAQEIGTAKYEGMPSSAVHTGCIDLTMSPDMIGQQLDSILANPRDFSELRGFTGNPSGL
LDLYHILLARTGVDFREYKETTINRRIARRMVAQGIDVYEDYVEFCRENATEVDALYKDMMISVTRFFRD
HAQFNQLTKVIQGLVDDNRDRQIRVWVAGSATGEEAYSLAILFAEAMGGLKAISKERIQIFATDIDTEAL
EVARRGIYPLSAANDVPRQYVETYMNLEGDALEVNKHLRSVVLFSRHNLIQDPPFINMDMISLRNLLIYF
GASLQEKVLSRMAYALVPNGKLFLGSSETVGSMHGHFETYSLPDKIYSKRGLRQSVQATANFLPLTALHR
GPLAQSRASTPPQTFDMFDALIRTLAPNGFIATQDHVIIRIIGDISSATELNESSALPRMSTKILKSELR
AEAASLITLCLRSKSTRSGRWHDVEGSDLIQLRMTCFPLLMDGEGEDHVLFSIEERESQPRTVATEDMNI
DDRMVYVRQIEDEIASTREALQQTIEELQTSNEELQSVNEEMQATNEELQATNEELETSNEELQATNEEL
ITVNEEMQINSTELQQLSIELAAVLEATPYPTLLVDPALQIRHASAAAIDHFGLSELPPNGTHIGACTDG
AGLAHLVSKVAECFRTRESSTLEVNDETWSKTLTFTPIQKGVTQETIGVTVTVL
>gi|99082068|ref|YP_614222.1| hypothetical protein TM1040_2228 [Ruegeria sp. TM1040]
MVTPVYEVSEYAGNMLTVEIREAAGGRDQTVAAVTLNSDELKNTLHFSGRRSISDVFHPDFADYLQNLLA
RAVEAPMVLTDPDVIQSFGGAVVARMRMLVNKAVDGGRHITVRFAYFIGAMSGLFRRDELSHHMPLPHRE
RAAVQALDSICTPLSNIASHLDRILENRNATESVRSRLRKIEDETVELKFYTELLRRYVDDCARERAGHE
EDHALEYENGEATTAIEEVERMMVETGT
>gi|99082069|ref|YP_614223.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
MEQARQLNRMSQRVTAAMEASKDGFAIFDEENRLVTCNDRYRELSHVHPDKVVPGMTLTEILADAVESGH
YLLRGVSAKDYIQNYNQRIVNHGFCTETQLELAGDRHIVSRVNETDFGDKVVTRICITDLVRNEREQRRA
AQALRETKDRLELQSLSDPLTHLPNRRHLDRELSRRLQTEPVALVRIDLDRFKKINDILGHEAGDYVLCH
VADVLRAHTKAGDVPARVGGDEFVVLCRSGTTLEQAQTLATRVLRAVLEPVVWGNKRCNFGASFGVAHGV
PGEITASELLSNADAALYRAKASGRGAVEVFTSEMRAEVLEERALSDRLPYAIEAGEITPYYHTQHDALT
WHLAGVEVLARWEHPDRGVLPPDRFLGIAKQLGLEAELDGCIFDRAVADMRSLRAEGILVRRVAFNVSAA
RIMQPSFIETVRARIPDQRESYAFEILESISCEDEGEALIFCIDALKDLGFQIDVDDFGSGHASINGVLN
IEPDALKIDRNIIFPLGKSERAERMVASVVDLAHTLDVKIIAEGVDTIEKAKTLGAIGCDILQGFYFSKP
RSFAELKKNLERLDLGDQVSNL
>gi|99082070|ref|YP_614224.1| zinc-binding alcohol dehydrogenase [Ruegeria sp. TM1040]
MKAIVHTARGTARDTLVLTETETPTPGPGEVLVAMRASGVNPSDVKLRSGAQGPMVAEQVLVHNDGAGVI
EAVGDGVGPARIGRRVWLYNVNRSADGLGQGPLGTAAEFAIVPAHLAVDLPDAASFEAGACIGVPAMTAH
RAVMWAGSVAGKTLLITGGAGAVGHSAIQIAKAKGARVIATVSSDAKAEIARAAGADEVLNYKSTPLVDQ
LIELVGAGGIDHVVDVDIAAHMEIYPQILKLNGSVGAYASASNLTPALPFYPLAFRNIQIQPVFVYSMSD
SAKAEAIADINALLSAGQLTPRIDRVFALEEIVDAHEAVEAGTLVGNAILKI
>gi|99082071|ref|YP_614225.1| endoribonuclease L-PSP [Ruegeria sp. TM1040]
MTHKTIHPEGWAPAKGYANGMLTHDGVLHIGGQIGWDENKEFVGDDFVSQMRQALKNIAAIVDAAGGKPS
DVTRLTWFVTDKQEYLAHQAEVGAAYREVFGKHFPAMSMLIVAGLVEDRALVEIEATAHIS
>gi|99082072|ref|YP_614226.1| thioesterase superfamily protein [Ruegeria sp. TM1040]
MYEMPQKVLFKHCDPAGIVFFPRYFEMMNDCVESWFTDVLGWPFEDMHQTAGVPTANIQTRFSAPSRHGD
HLVLRLRVTRLGTSSLTYEMTAHCGEELRFSTETTLVHINAEGRSAPWPAPIRTKIENEMKGQI
>gi|99082073|ref|YP_614227.1| ABC transporter related [Ruegeria sp. TM1040]
MSLLSVKSLTASYGVSQALFGVDLDINPGEVVALMGRNGMGKSTTVKAICRMINAGGTLEFDGQNLHALP
SHKAARLGLGLVPEGRRCFRDLTVAENLLATSRPGDWDMARVTQLFPRLGERHSQLSASLSGGEQQMLAI
GRALMTNPRLLILDEATEGLAPIIRQEIWAAINQLKADTDMAILVIDKTLAELAQVCDRAVVLERGKTVW
SGAMAALTPDISERYVGV
>gi|99082074|ref|YP_614228.1| ABC transporter related [Ruegeria sp. TM1040]
MTETILATYGISKSFGALKASRDISIDLRPGEIHAIIGPNGAGKSTLIAQICGSLTPDAGRVELMGQDVT
GLSTDQRARAGLGRTFQISALAMEDTVLENATLGAMGASGRPWRFWASALGDSALRDRAEAALERVGLAE
SKAKRCADLSHGQRRQLEVAVALTLAPKAFVMDEPMAGLGAEGSKNLTGFLDGLRQEAPILLVEHDMDAV
FALADRISVLVYGEVIATGSVDQIRTDPRVREAYLGESA
>gi|99082075|ref|YP_614229.1| inner-membrane translocator [Ruegeria sp. TM1040]
MTRETYFNAALMLGLIAVPAWALMSDEPFTITLATRAVILALAAAGLNIALGIGGLVSLGHAVFFGIGGY
AMGILAHHAQSYTPLMEWPFLIEGTKFMPVIWLLAVVVSALAALVIGILSLRTTGAYFIMITLAFGQMFY
YFAISWTTYGGEDGMSIYVRNDFPGLNTLAPIQFYGLCLAILVVVLIFTARLRRSPFGLALNAARQVPAR
VEAVGMDPMRLKLVAFVISGVITGLAGALFADLNRFVSPTMFSWQFSGEIMILVILGGVGRLFGPVAGAV
TFVALEHFLGGITEFWHIFLGLILLAVVLFARGGITGLVAGKEATHD
>gi|99082076|ref|YP_614230.1| inner-membrane translocator [Ruegeria sp. TM1040]
MSTILIIEQVLNGLQSGVMLFLMAAGLTLIFGVMGLINLAHGSLYMVGAFAAAAVAGVTGSFVLALIAAL
AAAALAGAVIEVAVIRRLYDSDHLDQVLATFALILIFSEGTRWVFGSFPLFLDIPDALSGPVTLPGGIQY
PLYRLALIGVGLLVAFGLWLLIERTRIGIQIRAGENDREMIAALGVDISKLYTLVFALGAALAGLAGALV
GAIQSVQVGMGEPVLILAFVVIVIGGIGSIKGAFIGALLVGLTDTLVGIFLPEVLKLFMDAAPATSAGSS
IASMSIYILMSLVLVWRPSGLFGARA
>gi|99082077|ref|YP_614231.1| extracellular ligand-binding receptor [Ruegeria sp. TM1040]
MKKLMLATAAAALAAGGAMAEVKVGMITTLSGGGASLGIDTRDGFMLAMEAAGRDDVEVVIEDDQRKPDI
AVQLADKMIQSEKVDVMTGIVWSNLAMAVVPATTAQGLFYLSTNAAPAQLAGKGCNANYFSVAYQNDNLH
EGAGAYATQAGFKNTFILAPNYPAGIDSLTGFKRFYEGDLAGEVYTKLGQTDYAAEIAQIRASGADSVFF
FLPGGMGISFLKQYSDSGVDLPVVGPAFSFDQGILQAVGEAALGVKNSSTWSKDLDNEANAAFVAAFQQK
YDRLPSIYAAQGYDTANLLLSAIDKADVNDDAAFAAALKEADFASVRGEFSFAANNHPIQNVYVREVIKE
GDVYTNKIVGTALEDHANAYVDECKM
>gi|99082078|ref|YP_614232.1| AMP-dependent synthetase and ligase [Ruegeria sp. TM1040]
MMTLGASAHTDTFTRDALPPADQWPDFMLEGFEYPEHLNAGVELTDAMVERGFGDRTALIGNGRQRTYKE
LADWTNRLAHALVQDLGVKPGNRILIRSANNPAMVACWLAATKAGAVVVNTMPMLRAAELKKYVEKAQIQ
FALCDTRLMEEMEACAAQCDVLERVVGFDGTSNHDAELDRLALEKPVQFEAVETGRDDVALLGFTSGSTG
EPKATMHFHRDLLIIADGYARDVLNVVPEDIFVGSPPLAFTFGLGGLAIFPLRFGATATLLEQATPPNMI
EIIEKYRATVCFTAPTAYRVMLSAMEEGADLSSLRAAVSAGETLPKPVYDDWMAKTGKPMLDGIGATEML
HIFISNRFDDHRPACTGKPVRGYEAKVVDDEGNTVPDGEVGRLAVRGPTGCRYLNDDRQAGYVADGWNIT
GDSFIRDADGYFHFAARNDDMIVSAGYNIAGPEVEAALLAHAAVAECAVIGAPDEARGHIVQAHIVLNAD
FAPSETLIKDLQSHVKATIAPYKYPRSIIFAEELPKTQTGKIQRFRLR
>gi|99082079|ref|YP_614233.1| acyl-CoA dehydrogenase-like [Ruegeria sp. TM1040]
MADQSFLNWPFFDEEHRAWAAKVEAVAEGLEVDHSDTDAACRRLVADLGAAGVLQPTAAAGASKSLDVRK
LCLAREILARHDGLADFAFAMQGLGTGAISLFGTDAQKAEWLPKTRSGAAIAAFALTEPQSGSDVANSTM
TAVRDGDDYVLNGEKTWISNGGIADVYTLFARTGEAPGAKGLSAFIVTPDLDGFEVVERLETIAPHPLAT
LRFSDVRIPASAMIGAPGQGFRIAMSVLDVFRSTVAAAALGFARRALDEALWRVTERHVQGAPLFDLQMV
QGHIADMALDVDAAALLVYRAAWTKDSGAARVTREAAMAKLFSTEAAQVVIDKAVQLFGGEGVRSGAMVE
KLYREIRALRIYEGASDVQRVVIARQAMMALEGK
>gi|99082080|ref|YP_614234.1| enoyl-CoA hydratase [Ruegeria sp. TM1040]
MSLDETTHFNCTIEGGIARISLNRPERKNPLTFESYAELRDWFRALPYSDEVHAVVIVPNGGNFSSGGDV
HDIIGPLTRMNMKELLAFTRMTGDLVKAMLNCSKPVISAVDGICAGAGAIIAMASDLRIATPEAKVAFLF
NRVGLAGCDMGACAMLPRIIGQGRAAELLYMGRSLGAEEGERWGFFNRLASAEALEAEAMKMAERIVEGP
TFANGMTKTMLAQEWSMSLEQAIEAEAQAQAICMQGNDFRRAYEAFVAKERPVFEGD
>gi|99082081|ref|YP_614235.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MSGTAAQADLGDTASKARLRLWLKLLKTSGSIESELRRRLRDRHNTTLPRFDVMSALSRNPEGLKMSQLS
QFLRVSNGNVTGIVDRLTEDGLALRVAVPGDRRAQVARLTPAGEAEFDRLAAEHEAWIGEMMAGLGADEI
TEMSALLDQIQPVAAPQEDKG
>gi|99082082|ref|YP_614236.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MSQDPRQEHVLITGGGTGVGAACAQAFAAQGAKVTLMGRTEKTLAEQGLPYEVCDVTDAPSVTSAVARAA
AARGPVTVAIANAGAAESVPFAKMQPELLTEMMAVNLGGVVNLWQAVLPGMKEAGRGRMIAVASTAGLKG
YAYVSAYCAAKHAVVGLTRSLAKELARTGVTVNAICPGFVETPMLQRSIDNIRAKTGMTSEEAAGALKAD
NPQGRFVQPEEVADAALWLASDTAGSVNGHALALTGGEI
>gi|99082083|ref|YP_614237.1| salicylyl-CoA 5-hydroxylase [Ruegeria sp. TM1040]
MRIACLGGGPAGLYFGISMKLRDPSHEVTVIERNRADDTFGWGVVLSDETLDNLAANDAKSAESIRSHFA
YWDDVALLFKGTRQVSSGHGFCGIGRKKLLILLQERARELGVKMQFETEVQSAEDYRKDYDLVVASDGLN
SRTRSLYADTFKPDVDTRLCNFVWLGTHQTFKDAFTFIFEETEHGWVWAHAYQFDDDTATFIVECTQETF
DAFGFGSMSQQESIKTCEEIFKDHLGGHALMTNANHIRGSAWIRFPRVLCEKWSHENVVLMGDAAATAHF
SIGSGSKLALESAIALADLLHEKPDLQSAFDEYEDQRRLEVLRLQSAARNSMEWFERVERYLDLDPVQLN
YSMLTRSQRISHENLRERDKDWLESAERWFMDQAGAPKDAPLRAPMFAPFRLREMDLKSRIVVSPMAQYK
AKDGSPTDWHLVHYGERAKGGAGLVYTEMTCVSPEGRITPGCPGLYAPEHEAAWSRITDFVHAETDAKIC
CQIGHSGRKGSTQLGWDEMDAPLPEGNWDIVSASAIPWSGQNATPREITRAEMDEVRDQFVRAAQMADRA
GFDMIELHAAHGYLISSFLSPVSNQRGDDYGGSLENRLRYPLEVFAAMRAVWPEGKPMSVRISANDWVGE
DGVTPDEAVQIARAFWEAGADLIDVSAGQTTTEAKPVYGRMFQTPFSDQIRNEAGICTMAVGNIFEADHA
NSILMAGRADLVAVGRPHLSDPYWTLHEGSKIGDRAAPDWPLPYLAGRDQSWRLADKEAETLRA
>gi|99082084|ref|YP_614238.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Ruegeria sp. TM1040]
MSRSEQVFHAGELILQNRAGVAPSYRERVAHAIRPQMPQQHRDFFESLPVLFLGLLDARGRVWATPAVGE
VGFLRSRDPGHLAVGARPVLGETLWLDVRAGAKVGAVGMEMASRRRNRMNGTITAVNGEGFEIAVDLSFG
NCPQYIQTRDLVWPANPPAPEAVALPDWESQSRALVAQADTFFIASRAAEMSARPIDGVDASHRGGRPGF
LTINDDSSLSFPDFAGNRFFNTLGNIEADGRVGLFIPDFKSGAGIFVTGLATVDWRPDRVSHFKGAERIV
DVQPEEIWYCTHALPGPAPLVSTWPLLAETGVW
>gi|99082085|ref|YP_614239.1| glutathione S-transferase-like [Ruegeria sp. TM1040]
MNAEFASSSAPIKLYRHPLSGHCHRVEMMLSILDLPYELVDLDLLQGAHKAPAFLDLNPFGQVPVLDDNG
TIVSDSNAILVYLVEAYGKETGWLPRAPGVAAAVQRWLSLTVSHLATGPARARWRTLTGASDTPETETAR
AISHAFLEQMEGLISGQHYLAGEAPTIADVSAYAYIAHAPEGGVSLAAYPKVRAWIDRVEALQGFVPMQA
SPLPELARGA
>gi|99082086|ref|YP_614240.1| hypothetical protein TM1040_2246 [Ruegeria sp. TM1040]
MTSTARPPLPPFTRESAIEKIRLAEDGWNSRDAAKVSLAYTPDSRWRNRAEFPVGRTEIEAFLTRKWARE
LEYRLIKELWAFDGNRIAVRYAYEYRDDSGHWFRAYGNENWQFDENGLMEERHASINEHPISEADRKFHW
PLGRRPDDHPGLSDLGL
>gi|99082087|ref|YP_614241.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MDRIQSMQVFVAVAEEEGFAAGARRMGLSAPSATRAINGLETQLGARLFTRTTRRLHLTDVGQRYLEDVR
HILTSLQAADDTARGAASAPVGLLRLTCPNEFGRIYILPILLDYLDHYPDMRAELVLLDRVVNIVEEGFD
VALRIGHLPSSTLSAVKVGAVRRVLCAAPAYLERYGTPETPADLSAHRIVAVNVISSATEWRFGAQQEIA
VRIAPQLCVSTVAAGRDAAREGWGLCRMLSYQAGRDVAEGHLTCLLEDYEPESMPIHLVHTEGRRAPAKV
RSFIDFARDRLRADPVLQALSSSKGCGLSA
>gi|99082088|ref|YP_614242.1| nicotinate-nucleotide pyrophosphorylase [carboxylating] [Ruegeria sp. TM1040]
MSFATLPDLILEPLVKSALMEDLGSYGDVTTRAVIPDDVTYSARLRAREEAVVSGMQVAALAFRLVDATL
EVKTRVADGAVCQPGDVLMEIEGKAASILMGERVALNFAGRLTGIATLTAAMVAETRGTQARITCTRKTT
PGLRMVEKLAVLHGGGFNHRYSLSDAILIKDNHIAAAGGIRAVLDATKAHASHMMAVEIEVDTLDQLREV
LEVGGASVVLLDNMTPAELREAVEINAGRLALEASGNVKRDTVAEIAATGVDFISSGALTHSARTVDLGL
DF
>gi|99082089|ref|YP_614243.1| L-aspartate oxidase [Ruegeria sp. TM1040]
MESSQDIQSNRIVIIGAGLGALYAALTLAPRPVVMISPDPLGQGASSAWAQGGVAAAMDVSDSPAAHARD
TQRAGAGTVDAQVADLVTREAREHILDLTTLGAPFDRTADGSYVMSREAAHSYARVVRVKGDQAGAEIMR
ALIERLRETPSIQVIEGAMAEGLELSDGAVTGVRLASSAPSGSAPLVLRGQAVLMAGGGSAGLYAITTNP
PRIRGQALGMAARAGAEIADAEFMQFHPTAMDVGEDPAPLATEALRGEGAILVNADGARFMLDEHPDAEL
APRDVVARAIFAQSIAGKRPLLDTRAALGEAITTVFPAVSAACARNGIDPTQDPIPVAAAAHYHMGGIAT
DLDGKSSLPGLWACGECASTGLHGANRLASNGLLEALVYARRAAQDIARTLGPLKEATSVRLEFAPGGAT
TDPAHVAALRRAMTQNVGVVRDAAGLRAALSEIAALAATQPDCESFQNICTAATMIAAAALLREESRGAH
ERSDFPETLPALAHRSRLTWEAAKALRDSLCDASASDPETP
>gi|99082090|ref|YP_614244.1| quinolinate synthetase [Ruegeria sp. TM1040]
MSLDIPVLRSELSQHYDLTPNPELAEAMSDVYQRMSRVVSPVDWVLYAPYVKAINELKAKRNAVILGHNY
MTPEIFHGISDFVGDSLQLAIKATEVEADVIVQCGVHFMAETSKILSPSKTVLMPDMDAGCSLAESITAE
GVEEMRRRYPGAPVVSYVNTTAEVKAASDICCTSSNAAQIVGAMESDTVIMTPDQYLAQNVARDVPHKNV
VWWEGSCIVHEQYTAKDLRDFREWNPGTRLIAHPECPPDVVAEADFSGSTSGILKYVTDEKPEKALLITE
CSMASNIADALPEVEFVGPCNMCPYMKKITLEKVLWSLHSMEGQVEVEPEMAAKARHAVQAMIDLSRKLG
I
>gi|99082091|ref|YP_614245.1| putative ABC transporter solute-binding protein [Ruegeria sp. TM1040]
MKRILSLALALAPLSAWATPDPADWPAVVEDAKGQTVHWHAWGGSTATNDFIAWVGERLEDDYDITLNHV
KLESTADAVTRVLTEKSAGQDDDGAVDLIWINGANFAAMKDADLLFGPFAEALPNWQLADTENKTLQHDF
TVPTEGYESPWAMAQVVFMHDTADLPERLGSMEALLDWAREHPGRFTYPQPPDFLGTTFLKQALVDLSDN
ADALSKPVNEDNYQEVTAPLWAFLEELTPLLWREGRAYPATGPRQLQLMNDDEIDLAISFSPGEASTAIA
NYQLPESVRTFVLDKGTIGNASFVAIPYNSGSKAASMVVANFLMSPEAQLRAQDPDVLGYGTVLDLNALS
VQDRAAFRTLDLGIATLTPEELGPVQPEPHPSWMTRISEDWVARYGVGN
>gi|99082092|ref|YP_614246.1| ABC transporter, fused inner membrane subunits [Ruegeria sp. TM1040]
MRLPLALPPVLPVLTILVLIGPVLAGLWGTISAAFGHLPVAGLYGPSLQPFEALWNWPGLGPAVRLSLVT
GVLATLLSLLITLLLLAGWSGTRPFRAVLRLLSPLLSVPHAAAAFGLLFLIQPSGWIARALSPWLTGWQR
PPDVLLVQDPWGLAMTLGLVVKEVPFLLLISLAALGQIDSQGRLRVAMALGYGRVAAWIFAVGPALYQRI
RLPIYVVLAYSMSVVDVAVILGPNTPPPLSVQIVRWMAEPDLTLRTLASAGALVQLALVIGALLLWRGAE
RGIAALGTGLIYRGWRFSRDGLWRALGLAAAATSVGLVLAGLLGLVVWSFAARWSFPDLLPDGMSLRSWS
RNSPAALETLATTFAIAGAATLAALVLTLGCLETEERRNLRLTRKGLWLLYLPLLVPQTAFLPGMQTLLL
GFGIDRTLWAVVLAHLVFVLPYLRLSLEGPYKAWDPRLGAVGAAMGASRNRIFLQLRLPMLLAPILTAVA
VGMAVSVGQYLPTLLVGGGRIQTLTTEAVALAAGGDRRAIGLYGLVQTAAALLPFVLALALPLFVWRNRR
GLHHG
>gi|99082093|ref|YP_614247.1| ABC transporter related [Ruegeria sp. TM1040]
MAEGLSLRALRILRGDHPLLELDLTVPPATILSVMGPSGVGKSTLLAAITGQMSTDFSLEGGIFLNGRDL
CPLPPQARRVGILFQDHLLFPHLSVGANLAFGLAPHIRGRTRRARIKDALAEIGLEGFHDRDPETLSGGQ
KARVALMRMLLSEPDLLLLDEPFSRLDATLRSQMRDLVYTFARDRALPVLMVTHDAADAEAAGGPIVQLE
P
>gi|99082094|ref|YP_614248.1| hypothetical protein TM1040_2254 [Ruegeria sp. TM1040]
MSDIDAFFHNEQGNYTVDDGGRKAVLKIFLILLASSLIAIPLMSGDHFSQKRSVLFFLSPFLFLAAWSTW
ASLKKVHHVVVHEDKVEILPLGLAFYKKDLVAAGIRSFGKQERLIELKTFRWSFKYYMRSLVWIGNCVSI
PIER
>gi|99082095|ref|YP_614249.1| putative ABC transporter ATP-binding protein [Ruegeria sp. TM1040]
MASYQYVYHMQGVSKTYPGGKKCFENIHLSFLPGVKIGVVGVNGAGKSTLMKIMAGLDKDFTGEAWAAEG
AKVGYLPQEPQLDESLSVRENVMLGVKEKKDKVDRFNQIAVEMAENYTDELMEEMTALQDAIDSENLWDL
DSQVDVSMEALRCPPDDAKIADLSGGEKRRVALCKLLLEAPDMLLLDEPTNHLDAETIAWLQQHLIDYKG
TILCVTHDRYFLDDITGWILELDRGRGIPYEGNYSSWLEQKAKRLEQEAREDKAKQKTLERELEWMRQGQ
KARQAKSKARIAAYNEMANTSEREKVGRAQIVIPNGPRLGGKVIEVENLGKHYGDKQLIEDLSFSLPPGG
IVGVIGPNGAGKSTLFKMLTGQEQPDQGSVTYGDTVKLSYVDQSRDDLNDNDTVWEAISGGAEIIELGDA
QVNSRAYCSSFNFKGGDQQKKLNLLSGGERNRVHMARLLKEGGNVLLLDEPTNDLDVETLRALEDALVDF
AGCAVVISHDRFFLDRICTHILAFEGDAHVEWFEGNFEDYEEDKKRRLGPDALEPKRLKHKKFVR
>gi|99082096|ref|YP_614250.1| hypothetical protein TM1040_2256 [Ruegeria sp. TM1040]
MRDAGAIAAMRRLWGRLCLQHDRSPTSAKNCGRGVDHILTTFIFNLTIKQSAAARVRAAPLRKRQQETIM
IVAALILGVIGGSVSAVSAGVFFGASLLLCSAVYVGSGLLVSVMTLFVGVILQSRRQSDTPSEERAVAHA
>gi|99082097|ref|YP_614251.1| hypothetical protein TM1040_2257 [Ruegeria sp. TM1040]
MTDGGECIMALAGLLLGMIAGLTCAAIGFFALDLSFWICLLLYSFVGALSTLSITVLTHLLRSRTPYWQS
PPSQETATS
>gi|99082098|ref|YP_614252.1| nicotinic acid mononucleotide adenylyltransferase [Ruegeria sp. TM1040]
MRHAYPYLAPGMTVGLLGGSFDPPHEGHVQISRAALKRFDLDQLWWLVTPGNPLKENPPASMTRRIKAAR
EIMDHPRVRISDIEARLNTRYTAQTLRELRKLYPQVRFVWLMGADNLAHFHRWKNWRGIMESVPVGVLAR
PGDRISARLSRAARIYSQHRIPAGQSHLLARASSPAWCFLNVPMTKASSTEIRKRGAWTG
>gi|99082099|ref|YP_614253.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Ruegeria sp. TM1040]
MISRRHFLSTALAGLAAAPALANAPGYTPRPKARGLSPYTPGADGLDAILRGAGLSGQSTCVVANARTGQ
VLESVEGDALLPPASVAKVLTALYALDSLGAGYRFRTRLVATGPLKNGIIQGDLVLVGGADPTLDTDGLA
NLAGQMKTAGVRGVTGRLLIWEDMLPYIRSIDPDQPDHIGYSPSVSGIALNFNRVHFEWKRAGNNWAITM
DARTQKYRPDVYTSKMAVARRDLPVYSYENKAGIDHWTVASGALGNGGARWLPVRNPALYAGDVFQTLAR
ANGIALPSPKTTATLPGGTVVAQIQSAPLPDLLRAMLKYSNNLMAEMIGMTASLQRGARPSSLKSSGQRM
SDWARSALGMQHCKMVDHSGLGEESRLSANDMVRALLASRRTGALKPLLKPYYFNDAKGRPIKTHPVKIA
AKTGTLNFVSGLGGFINTPDGGELVFAIFSADQRARAKISRAERERPRGGRSWNTRAKKLQQNLLDRWGQ
VYGS
>gi|99082100|ref|YP_614254.1| hypothetical protein TM1040_2260 [Ruegeria sp. TM1040]
MTEETIQLLTPQDCLVAVMVAVSASDEDIRTAELVKIQNAINMLPIFAEYDADRIAAVSRTVFDLFEQED
GLDALFGLVREILPERLNETCYALACDVAAADGKLNEGELRLLEEIRYEINVDRLHAAAIERGARARHMV
>gi|99082101|ref|YP_614255.1| lysyl-tRNA synthetase [Ruegeria sp. TM1040]
MSVLREEALKSKAWPFEEARRILKRYAKGAPEKGYVLFETGYGPSGLPHIGTFGEVARTTMIKTAFEVIS
DIPTKLICFSDDLDGMRKIPGNVPNAESLTEHLQKPLTSVPDPFGTHESFGHHNNAMLRRFLDTFGFEYE
FYSATEFYGSGQFDEVLKRAVDKYDDIMAIMLKSLREERRQTYSIFLPIHPETGRVLYVPMKKVCAETYT
ITFDDEDGREWTLPVTGGNVKLQWKPDFGARWAALGVDFEMYGKDHSTNTPIYDGICRVLGQRAPEHFTY
ELFLDENGQKISKTSGNGVSIDEWLTYASTESLAYFMYQKPKTAKRMHFDVIPKAVDEYHQQLRAYHGQD
LKAQLSNPVWHIHGGNVPQSDMVVPFSMLLNIASVSNAEDKETLWGFINKYAPDATAETHPGMDQAAGHA
VRYFNDFVKPAKTYRLPTDQERAALTDLADALRSSEAALAAIAKKNELVGNDDPLPEANFADEEFLQSVV
FAIGKIHGFEPLRAWFSAIYEVLLGASQGPRFGGFIALYGVEDTITLIESALAGDLV
>gi|99082102|ref|YP_614256.1| hypothetical protein TM1040_2262 [Ruegeria sp. TM1040]
MRMMVTFGLVAALAVATLGTPAKAQKEPITGVIGAQIEAFQANDMGTAFGFASPNIRALFGTPERFATMV
EQGYPMVWRPADVRYLELREVAGNLWQRVMVTDADGDIHMLDYQMIETEAGWKINAVQLIKAPGANV
>gi|99082103|ref|YP_614257.1| hypothetical protein TM1040_2263 [Ruegeria sp. TM1040]
MNKAITDGLQLMPPAFSQGLGVWSSGDGTPGSDTYDGAANAALVAGDADFGGCLELQKTDSTQRLRYMGE
TPILPGCYLRVTARVKAMSGALPTVRIAGWAGAANNSHVSGVIESGPGTTLSAYGEVVEVQAIVGTGSRS
GVDMPWGLDAAYGHLGLNLTGANGGVIRVDDFVIEDITSVFLRDMLSVVDVTDFGAVGDGAADCHAAFEA
ADDAANGRRILVPDGEFRINSTLSLNHDVIFEGTLSMPDNAMLLLTKSYDYPTYAAAFGDEELAFKKAFQ
ALLNSVDHESLDLGGRSIALSGPIDMQAAVPNRTSYATRRYIRNGQFAAQAGAAWDHNVITAQATYSASD
KKTLTNVANISAIPVGALVEGAGVGREVYVTAKNLGASRLTLSQPLYDAEGTQNFTFTAFKYMLDFSGFS
SLKKFGISGVEFQCNGVASALRLSPAGTVFALHDCFFTRPSARGITSIGSGCQGMLVDNCQFLSDEDAAD
VADRETIALNVNSNDVKLRHNRATRFLHWAVMAGSNHTVTGNHFFQGDSVAGGIRTAGIVVTDTYASHTI
SENYIDNCFIEWTNEYDANPDFNGGFSFAAMSITDNVFLSGDVASWFSYIVIKPYGSGHFLNGVSVTGNK
FRSINGTIDRAERVDTSFADLDFSRAKDVFFDANSFHNVTTQSRNPLRVEFDQNTAASTWTIATGGALPF
DGHSRAVDAVIVEGSLRNSGGSVVYPGHYVRTQEGGSNNKIDLVWEQAVRGTVRTLIRIDR
>gi|99082104|ref|YP_614258.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Ruegeria sp. TM1040]
MPQDTPPSEKPTSPIRPTDDEARTLAQSLIAEADFAALATLSDEGHPVQSRVAFALDASGGPISLVSTLA
QHAQAMAVRPQVSLLVGEPGEKGDPLTHPRLTLNGTAEILPNGCPAHEEMATHYLRRHPKAKLYIGFADF
HFVRFQIREAFLNGGFGKAYQLTPADLGLVP
>gi|99082105|ref|YP_614259.1| hypothetical protein TM1040_2265 [Ruegeria sp. TM1040]
MRLPLVLSLVYALSTLPALAGAWLEAEGRGFTSSALRTRGSGQEVSGYIAYGVSQRLTFGLDLNQSTDAQ
NQSAHALVFTRLPLRQSETGWQLAFEMAAGFGRVETQWSGMKRLGLSAGRGLSWPTRGAWVNFDLIREWR
EEGLAKAWKLDGAFGFERRSGPAVIFRGEVFQPDAGARIWKVLPGLRWRLSPKRELLTGLEWRSFGQERL
GLTLELWQRF
>gi|99082106|ref|YP_614260.1| antibiotic biosynthesis monooxygenase [Ruegeria sp. TM1040]
MPTIQKSDDRQTVITTFEVTPGTCQDLIDALEAAYAEFISFQPGFIAAGLHVNDAQTRIANYSQWHRRED
FMAMLRSQEMRKRNRELNALCRSFEPVMYDVVTTFG
>gi|99082107|ref|YP_614261.1| hypothetical protein TM1040_2267 [Ruegeria sp. TM1040]
MFRLSLTLPALAVLAACATPQERCIREGASEQTQLQRQITESEGNIARGYAIHRQTVPETVFHSCRRVKD
GKVVGYYPCPETYYRTIETPVSIDMDDERRKLRRLKDALPAAQKRAAEAAAQCRVLYPEKSI
>gi|99082108|ref|YP_614262.1| metal-dependent protein hydrolase [Ruegeria sp. TM1040]
MTITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAAARIFDHHQRP
NPLRPDGQPYSSFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPVDLLDNGAVDSAEAGPLFAGL
TLPVLLESLKPVFDDRRDGADDAAFVDALAIARAFVEARLRHKAAKLRATDVVLRAIEDAGERRVLELPM
GMPFRGAVEQAGADHLLFVIHPRDSDWALTTIRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCH
NGRFLAIARSREAVLALAELAVAEVCATA
>gi|99082109|ref|YP_614263.1| lipolytic enzyme, G-D-S-L [Ruegeria sp. TM1040]
MRKFLKQIVVSLVSIPLLLGVAQAEPVRITAFGDSLVQGYGLPQGEGLVAQLRDWFAVEGFDVALTNAGV
SGDTTAGGAARIDWTLAETPDAMIVLLGGNDLLRGLPPEDTRANLSRIIEAARGAGAEVLLIGMQAPGNY
GADYKAAFDSIYPDLTATHDLVLHPFAFAGMAAEAGEDPAQMGAYMQADGIHPNARGVALNIKAMEPALH
ALMARLSQPEDSANN
>gi|99082110|ref|YP_614264.1| ABC transporter related [Ruegeria sp. TM1040]
MSTDARPILTLQDVHLSLNGNTGPVRILEEISLEVQSGETLALVGPSGSGKSSLLMVMGGLEQATGGQVR
AMGEDLTRLDEDALARFRRAHMGVVFQSFHLIPTMTALENVATPLELAGARDAFDRARDELEAVGLGHRC
DHMPAQMSGGEQQRVALARAVVTRPEILLADEPTGNLDQANGAQVMDLLFDLRDRHGSTLVMVTHAPELA
ERCDRTIRLRDGRILTDAQREAAE
>gi|99082111|ref|YP_614265.1| hypothetical protein TM1040_2271 [Ruegeria sp. TM1040]
MSQKSSFRLAWRFALRELRGGLRGFRLFLACLALGVGVIAAIGSIRASIEAGLSREGASLLGGDAELTFT
YRFANPDEIAWMDEIARDRSEVVEFRSMAVVGDERALTQVKSVDAAYPLRGDFRLMSGQPLHEALAAADG
RPGAVMERVLADRLGLSEGSVFRLGTQEFRLSGLLEWEPDAAGSGFSIGPRTLVRTEALAQSGLLAPGTL
YSTKYRLTLPPDADLAALEQDARARFEESGMRWRDARNGAPGIARFVERLGAFLVLVGLSGLAVGGVGVS
TAVRAYLATKTETIATLRTLGSERRVIFLTYFLQIGVLSLCGITLGLILGGVGPLLLGPLIAAQLPFPAV
FSIYPAALAESALYGVLTALLFTLWPLARTERIRAAALYRDAVSGGLQWPAPRYILATLATLGLLIAAAA
LFSGAPELALWTAGGLIGALVVLLIAGAAIGGLARMGNRMARGRPALRWALASIASARDGAMPAVLALGL
GLTVLAAIGQIDGNMRRAIAGNLPDVAPSYFFVDIQRDQMPAFLERVEGDPQVSKVDNAPMLRGVITRIN
DRPAKEVAGDHWVIRGDRGVTYAAAKPASTNVTAGAWWPEDYTGPPQISFAAEEAEEMGLALGDTLTVNV
LGRDITGTITSFREVDFSNAGMGFVLTMNEAALRGAPHSYIASVYAEEDAEAAILRDVAREMPNITAIRV
RDAINRVSEILGQLATATAYGAAATLFTGFLVLLGTAAAAEPARRYEAALLKTLGAPRGQILRSFALRSA
ILGAAAGGVALLAGILGAWSVSHFVLETDYVVIWPNAVGVIGGGILVTLFAGLAYALRPLAARPARVLRA
RD
>gi|99082112|ref|YP_614266.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040]
MRITKRTNIAVRLLMYCALNEGRLVTKSEIAARCNISENHLAQVVNQLSQLGFLKTQRGRNGGLALGRAA
ADICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALTRAGEAFYGALDGISLESLTCDNIDLQRI
LSPLSCPSPAKTPA
>gi|99082113|ref|YP_614267.1| hypothetical protein TM1040_2273 [Ruegeria sp. TM1040]
MTPHFFGFGSLVNTATHVYGNTRPARLEGWRRTWVRTPDRSMAFLSVTPAPGHVIEGLLAAVPNGDWAAL
DERETGYVRVDVTPQVAHDMAPAPQISLYQVPEESHDRNARDHKILLSYLDVVLRGYREVFGDTGAEAFM
ATTDGWDTPILNDRATPYYPRHQVMTPDEHALHDALIAEAGAQVLAGGE
>gi|99082114|ref|YP_614268.1| hypothetical protein TM1040_2274 [Ruegeria sp. TM1040]
MISRSLLLLRRITRQLWFRVVAISLFSLLALAIAPLLAPILPPAWEDRFGREAVLPVLTILASGMLAVTT
FSLNVMVSAYRTASSMATPRVYRLLLEDTVTQSVLATFTGGFVYSLSAVILFRAGIYPPGSAFVVFVMTA
LVVMLIVLAILRWIDHLSDLGSMDHTLRLIESRSCSSLRARKETPCLGGCCLKTEPPSSASPIPASQSGF
VRFVDMAALNRRAKEAGVTLYLTRLPGEFVLRGRPVAMAEGADEAFCKEASGLIDVGDVRSFEQDPTFGL
TLLAETAQRALSPGVNDPGTAYEVMGRLTRLLWENLPEDSEATKSDADFPHIHLPPVTASALLKASFPPI
ALYAGDAPEVMDWMQTSLKALEHHPNAAMTRAAQEMRQDYFENS
>gi|99082115|ref|YP_614269.1| glutamyl-tRNA synthetase [Ruegeria sp. TM1040]
MTTTRFAPSPTGYIHVGNLRTALMNYLIARKAGGTFILRIDDTDPERSKEEYVDAIKQDLEWLGITWDKV
ERQSERLDRYAEAADKLREIGRFYEAFETPTELDLKRKKQLNMGKPPVYDRAALALSDAEKESLRAERGN
GVWRFKLDQERIEWTDGILGDISIDAASVSDPVLIRGDGQVLYTIASVVDDTDMGVTHVVRGSDHVTNTA
TQIQIMAALGHGHPEFAHHSLLTGPQGEALSKRLGTLALRDLREAGVKPMALLSLMARLGSSDPVELRTD
MAELVDGFDINRFGSAPTKFDAEDLYPLTARYLQTLPVATVKSELDAIGVPADTQEAFWAVAKENITTLK
DLEGWWILCRDGAEPLIADEDKEFIAEAMTLLPEGPYDSESWGKWTAAVKEKTGRKGKGLFMPLRKAVTG
MERGPDMSALLALMQTVRARG
>gi|99082116|ref|YP_614270.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MTLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTGRDGVKDIFGG
GASDEAFSEVAAENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITKALADAGVTPEEVDVVVLTHM
HGDHIGGMTDDSGAATFANARYVTAAAEYDHWTAMPEGNGGADRVRAKVAPQAEKMSFIDDGGAVASGVT
GMAAFGHTPGHMVYMIESAGQQLLLTADLANHYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTP
MIGYHMPFPAAGYVERRGEGFRFVPVSYQMMG
>gi|99082117|ref|YP_614271.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MPGPQLPHFNSDRVLPKAVDVVIIGGGIVGASTALELAERGHSVLLCEKGQIAGEQSSRNWGWVRMSQRD
PREMELMTHSQRIWEGLDMRTGYATGYTKCGIMFTAHTRKREAELSAWSEHLKAIGGEGHMLRGESLEQL
TPGYGHRIRAGFYTPQDGCAEPQMATHAIASAARDKGAVVITGCAVRRLDVEAGRIRGVITEKGRVNATA
VVVAGGAWSRLFLRNEGLFLPQLKVLNSVMRLSPVKGVPETALWAAGFGLRKRMDGGYTVASGGENTFDI
VPDTFRIGHRFIPAFLRDVTALRFRVSDRWRIESAEARPWSGQDRSPFEETRVLDPQPSQKALRRGLAAV
RDAFPALEKADVTQSWGGLIDVTPDEIPVISEVISRPGLFVSTGYSGHGFGLGPGAGRLTADLVTGDAPI
VDPRPFRLSRFGA
>gi|99082118|ref|YP_614272.1| NAD synthetase [Ruegeria sp. TM1040]
MMADSFRITLAQLNPTVGDLAGNAAKALSAWQEGRAADADLVALPEMFITGYNTQDLVMKPAFHQAAIAE
VEALAKATAEGPALAIGSPWVEDGKLYNAYLILKGGKIASKCLKHHLPNETVFDEVRIFDAGPLGGPYSV
GNTRIGSPICEDGWHEDVAETLEETGAEFLLIPNGSPYYRGKMETRINHMVARAVETGLPVIYLNMVGGQ
DDQVFDGGSFALNPHGALAVQMPVFDECIAQLDLERTADGWRIKEGEKAHLPDAWEQDYRTMVLSLRDYM
GKTGFKKALLGLSGGVDSAIVAAIAVDALGAENVRCVMLPSEYTSKESLEDAEAVAKALGVHYDYVPISE
GREAITNTLAPLFAGRDADLTEENIQSRLRGLLLMAMSNKFGEMLLTTGNKSEVAVGYATIYGDMNGGYN
PIKDLYKTRVFETCRWRNANHRDWMMGPEGEVIRPNVIDKPPSAELREDQKDSDSLPDYPELDAILDILV
DQEGSIADCVAAGFDRDVAKRVEHLLYISEYKRFQSAPGARLTKRAFWLDRRYPIVNRWRDPS
>gi|99082119|ref|YP_614273.1| hypothetical protein TM1040_2279 [Ruegeria sp. TM1040]
MIRINSTLLLTSLLSLNAAGLSAPAFAQDEQVLTTQDEIGGVYEGEFKGGLQHGQGTYKLPNAYEYSGQW
VEGEIKGKGVARFPNGSVYEGEFSKGKPEGLGKITFADGGTYEGEWQDGVINGQGIAIYANGVRYEGSFV
DAKHDGRGVMQNPGGYQYEGDWVAGRKEGTGKITYPDGTTYQGGVKDGKLHGLGTLVMPDGLKYEGEWAD
DQMNGTGVLTQPNGDVYEGPLVNGRRQGEGVLRYANGDVYEGQFDDDLRQGEGTFTGTDGYIYSGQWQAG
QIEGQGKVTYPDGSVYEGEFRDDLAHGVGKITYPDGSTYEGEWVAGVIEGNGKATYANGAIYEGSFKNAK
NDGQGVMTSPEGYRYEGGWKDSLRHGEAKVTYADGSVYEGAFANGQRHGFGKITRPDGFSYEGQWVEGKI
EGEGIATYANGDIYEGSFVGSKRQGPGTMRYASGQEASGTWNNGALTTPDAAASEADQSTDPAAEETPDA
EAGSAGDESN
>gi|99082120|ref|YP_614274.1| hypothetical protein TM1040_2280 [Ruegeria sp. TM1040]
MATLLYLVHGAAVQQQQQLSYSVLSALKHGVDGVDLVLICDAANRRPDLPLRHVVISPEQIAQWTDGGRR
PARAQLHALDLALRETGGPVCWASTDSAFTAAPARLLERITPETPLFFDRDGWLTSRPEWSPIIDACKDS
ALSEQIQPSTEVFDTGILGLSPSDLDFINQSLSPSFWPRIPNIFDNFEQIHLCALLAQNAQELRFSHDLV
QRYQGYMRHVYQGRLEAMFPPGGAVNTALAAQLPAITEPPKPLHLRLKAKAYALRRGLGHGTEFGYLAYL
CAFAAPTPEGRNVWANIALDMMERSARAPQKLVKDLSKLAPEALPDAELSPQTEERWRRYWMNAGL
>gi|99082121|ref|YP_614275.1| deoxyribodipyrimidine photolyase-related protein [Ruegeria sp. TM1040]
MTRLVLVLGDQLSEGLSALKAADPAHDVVVMAEVMDEGTYVPHHPKKIALVLAAMRKFAQRLEGQGWRVA
YRRLDEDGAESIVGELLRRAEEFGASEVLATTPGEWRLIHALKYAPLKVHFHADDRFLATREDFTEWAEG
KKQLRMEYFYRLMRKKTGLLMEGDTPVGGKWNYDSENRKAPPKIIDHKGPPRFEPDAEVEEVLDLVEARF
GTHFGDLRPFWFATTREEAQEALAHFITHALPQFGDYQDAMMTDERWLYHSILSPYLNIGLLTPLEICEA
AEVAHQDGHAPLNAVEGFIRQILGWREYVRGIYFLEGEDYPTRNALEQTRALPALYWGAETDMHCLSQAV
EQTGQEAYAHHIQRLMVTGNFALLAGVDPAQVHEWYLAVYADAFEWVEAPNTVGMSQFADGGIIASKPYV
SSGAYIDRMSNYCGSCAYKVKQKTGEGACPFNLLYWDFLNRHRARFEGNPRMGNMYRTWDRMDEEKRDVI
LQEASAFLAKLDAGERV
>gi|99082122|ref|YP_614276.1| 2-isopropylmalate synthase [Ruegeria sp. TM1040]
MTSKTDTVNQQDRVLIFDTTLRDGEQSPGATMTHDEKLEIAELLDDMGVDIIEAGFPIASEGDFKAVSEI
AERSKNSVICGLARANFKDIDRCAEAVRKAAKPRIHTFIGTSPLHRAIPNLTMDEMAERIHDTVTHARNL
VDNVQWSPMDATRTEWDYLCRVIEIAIKAGATTINIPDTVGYTAPRESADLIRRLIETVPGADEIIFATH
CHNDLGMATANSLAAVEAGARQIECTINGLGERAGNTALEEVVMAMRVRNDIMPFQTGIDTKKIMHISRR
VATVSGFNVQFNKAIVGKNAFAHESGIHQDGMLKNKETFEIMRPEDVGLAGTSLPLGKHSGRAALRDKLS
SLGFEIGDNQLKDVFVRFKELADRKKEVFDDDIIALMRTSGDEDDHLKLVSMKVVCGTGGPAESTVEMEV
DGKDVTETAEGDGPVDATFKAIRKIHPNAAHLQLYQVHAVTEGTDAQATVSVRLEEDGVIATGDSANTDT
VVASAMAYIDALNRLIVRRDKMGEGADSREISYKDVD
>gi|99082123|ref|YP_614277.1| putative transport protein [Ruegeria sp. TM1040]
MTTTEANAQHSDVTFDDVIITVVMARVTDFFGFFVYAIASALVFPAVFFPHLDPMMGTLWSFALFSLAFL
ARPIASLLGRRLQLVIGRAGKVTVALMILGVSTVAIGLLPGYEAWGIGAPIALAALRFMQGLGLGGAWDG
ITLQLKAAAPKGQSGLYSMVPQIGGPVGFCVAAALFYVLTGFLSEEEFLTYGWRFAFFAVMAVNVVSLFA
RLRLLSTNFAGDDEVVLRSAPLGELMSQEWRTIVLSALLPLASYALFHMVTVFPLSYSLLFTESNLSSIL
LLQLAGGTLAIVTVILSGVLADKFGRPVVLWISSALILLLCLSIGTLERAPAIYIIFGFVVLGLAYGQSS
AIVPDRFKPQYRYSGAAMATNLSWILGAAFAPLCGLVLAWTFGLWAAALYLLSGVIVTAVALVLLQRQ
>gi|99082124|ref|YP_614278.1| ubiquinol oxidase, subunit II [Ruegeria sp. TM1040]
MRYLRFLCCALAFLTLSGCNLVLLSPSGDIAAQQGDLIVYSTVLMLIVIIPVMALTVFFAFKYRAENKDA
RYEPDWDHSVSLEIVVWFVPLAIIICLAGLTWVATHRLEPYDDLRRVSETKPIDPNVEPMEVQVVALDWK
WLFIYPEYGVATVNEAAAIVDRPVEWKLTSSTVMNAFYIPEMAGMIYAMAGMETELNAVINEPGTFEGFS
ANYSGNGFSHMRFDFIAEDEAGFEAWIEEVRASGMTLDQDSYAVLEQPSVAHEVEYFGAVEDGLWDKILN
MCAGPNALCLNDMMMVDALGGGGLAGLYNRELYRGICSADDPEALLAMLRPDIQEEQQREDILQAMTLTS
GDLLPNSNTTEAN
>gi|99082125|ref|YP_614279.1| cytochrome-c oxidase [Ruegeria sp. TM1040]
MATIPAATAAAQSSDALNQTHWFWGKLGWDIFPFYDPIIFGTFIGTCILAAGVVGIVLYYRLLPYLWNEW
FTTVDHKKIGIMYMILAVVMLVRGFADAVLMRLHQALASAGYVGFLPAYHYDQVFTAHGVIMIFFVAMPF
ITGFMNYVMPLQIGARDVAFPFLNNFSFWLTVSGAVLIMISLFVGEFAATGWLAYAPLSGLKFSPGVGMD
YYLWSLNIAGIGTTLSGINLVVTLVKMRAPGMTWMKLPIFSWTTLCTNILIVVTFPVLTATLALLTADRY
LGTHFFTNEMGGNPMMYVNLIWIWGHPEVYILILPIFGIFSEIVATFCGKRLFGYASMVYATCVIMVLSY
IVWLHHFFTMGAGADVNSFFGITTMIISIPTGAKLFNWLFTMYKGRIRFELPMMWTIAFMLTFVVGGMTG
VLLAVPPADYVLHNSLFLIAHFHNVIIGGVVFGIFAGITYWWPKAFGFHLDPFWGKVSFWGWVGGFWVAF
MPLYLLGLMGVTRRLSQFEDTIYAGYFFTALIGALMIAVGLLAFLVQIFVSIRNREKLAVGNDPWGGRTL
EWSTTSPPPYYNFAFTPRVYERDAWHHMKTHDAKAPTSGFVPIHMPHYTASGIILAGLMTVMGFALVWHI
WWLSALMFLASLAYGIAHTFNYNRDYYVPAEEVSEIETGQRTVATPAE
>gi|99082126|ref|YP_614280.1| cytochrome c oxidase, subunit III [Ruegeria sp. TM1040]
MSHSAATPAPEALEFYVTEDPHAGHGDHHHDTGTMLGFWIYLMSDCLIFGILFAVHAVVGTSYAAGPSPA
DLFEIDKILLATFFLLFSSITYGFAVINMQQRKQRAMMLWLGVTLVFGLGFLVMEILEFQHLWHLGAGPG
ASAFLSSFWVLVGTHGLHVTAGAIWLVVLLVQVQMHGLTEANTRRILCLSMFWHFLDLIWIGVFSFVYLT
GVLL
>gi|99082127|ref|YP_614281.1| cytochrome C oxidase subunit IV [Ruegeria sp. TM1040]
MSAHSHGSYKSYAIGFVLSVILTVIPFWLVLGEVDIGVNTAIAVIFGLGAVQIIVHMHYFLHVTYGAEDG
WQVMSLVFTGILLIIVLAGSIWVMAHLHENMMPAHEQIERVRNLP
>gi|99082128|ref|YP_614282.1| Surfeit locus 1 [Ruegeria sp. TM1040]
MSTGTSTEGGGRRRPFWVDAVILALAFGVFVTMVRLGNWQMQRLSWKLDLIEQVETRAFGPPVAAPIKGA
APEYQRVTLQGVFRHDLSLRIKAVTEIGPGSWVMTPIEGAEQTVWVNRGFVPPQMRLDEINRPEGLQEIT
GLIRSDQPGGTLLEQNLPDRDRWVSADLALMSADRGIEAAGYYIDAAHQGAAADWPRGGMTQLDFRNTHL
SYALTWYAMAVLFFGAMAYVIWDRLRAPKERTS
>gi|99082129|ref|YP_614283.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MTKLAHSMIRVLDETASVAFYKAAFDMEIADRLDFDDFTLIYLTAPEGSFELELTVNKSQTEAYDLGNGY
GHLAVVVEDLEAARAKVETAGGAPRDIVDFRPAGERVARFFFVADPDGYQIEVIEAGGRFK
>gi|99082130|ref|YP_614284.1| histidine triad (HIT) protein [Ruegeria sp. TM1040]
MTAYDNDNIFAKILRGEIPSMRVYEDDDTLAFMDIMPRADGHLLVIPKTPCRNVLDASAAQLEAVIRSVQ
KLAQASKAAFDADGVTIQQFNEAAGGQEVFHLHFHVLPRHEGVSLRASGQMGDMEAIAAHAEKIRAALA
>gi|99082131|ref|YP_614285.1| cytochrome-c oxidase [Ruegeria sp. TM1040]
MADAAIQGHGHEDERSFFTRWFMSTNHKDIGILYLIVSALTGFISVAFTVYMRLELMDPGVQYMCLEGFA
ADPCTPNGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLQIGAPDMAFPRMNNLSFWMYVAGTALAV
SSVYAPGGNNQLGAGVGWVLYPPLSVKEGGIAMDLAIFAVHVSGASSILGAINMITTFLNMRAPGMTLFK
VPLFSWSIFVTSWLILLSLPVLAGAITMLLMDRNFGFTFFDAAGGGDPVLYQHILWFFGHPEVYIVILPG
FGIISHVIATFSRKPVFGYLPMVWAIIAIGVLGFVVWAHHMYTVGMSLNQQAYFMLATMVIAVPTGVKVF
SWIATMWGGSIEFKAPMVFAFGFLFLFTVGGVTGVVLSQAAVDRAYHDTYYVVAHFHYVMSLGAVFAIFS
GIYFYFGKMTGRQYSELGAQIHFWMFFIGANLTFFPQHFLGRQGMPRRYIDYPEGFAYWNKISSYGAFLS
FASFIFFFGVVIYSLLRGARVTQNNYWNEYADTLEWTLPSPPPEHTFEILPKQEDWDKSHSH
>gi|99082132|ref|YP_614286.1| hypothetical protein TM1040_2292 [Ruegeria sp. TM1040]
MPYDWTQPPSDHGGELHLWPHQSLPPEGYMRFIGATAALITVPLLPLMGTPLFWGLIPFLTLAVFGMKYA
LDQNRRHAQIIEVLRLGPEEAELIRRDARGSEQSWRCNRHWTQVSLHPDRGPVPNYVTLRGAGREVEIGA
FLSEDERKALYHDLRDAIRQSDSR
>gi|99082133|ref|YP_614287.1| hypothetical protein TM1040_2293 [Ruegeria sp. TM1040]
MDTRTRVNEALKQAMKDKAMERLCTLRLINAAIKDREIAARGDGEEGGIGDEEILAILGKMTKQRKESVR
AYEEGGRLDLAEREMNEIEIIEEFLPKQLSEDEVSNAVKAAVDETGAESIRDMGKVMGALKAKYTGQMDF
GKVGPMVKDQLCSAGGC
>gi|99082134|ref|YP_614288.1| carbamoyl phosphate synthase small subunit [Ruegeria sp. TM1040]
MVETVSPKPTACLALADGTVFYGHGFGATGRCVAELCFNTAMTGYQEIMTDPSYAGQVVTFTFPHIGNTG
VTPEDDETADPVAAGMVVKWDPTLSSNWRATEELKSWLTRTGRIAIGGVDTRRLTRAIRQQGAPHVAMEH
NPDGNFDLEALVAAARAWPGLEGMDLAKDVTCAQSYRWDEMRWAWPEGYTRQEEPKHKVVAIDYGAKRNI
LRCLASAGCDVTVLPATATSEEVLAHGPDGVFLSNGPGDPAATGAYAVPMIKEILDKTDLPVFGICLGHQ
MLALALGAKTTKMNHGHHGANHPVKEHGTGKVEITSMNHGFAVDAQTLPEGVEETHVSLFDGSNCGIRMT
DRPVYSVQHHPEASPGPQDSFYLFERFAEAMAARKA
>gi|99082135|ref|YP_614289.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MLGRTALVLMADPASLAALRQDLRGQFDEVIPIPTPAAEIEAILLRALQAQMTREAARSVAPALSCRSFD
YRAARAPAFATGTLLCLFSILAPHLVTAVLAVASLVTLLMFTALRISGLLAAARPDQPKSETPKDLPQMS
MLVPLYREAEIGKHLLRRLCRLTYPRDRLEVLLVLEENDDVTRNAVKCADLPDWFRVVEVPGDGTLTTKP
RAMNYALNFCRGEIIGIWDAEDAPAPDQLESAASAFAHAPPDVVCFQGILDFYNPSRNLISRCFTLEYAG
WFRVLLQGIARLGLVIPLGGTTLFIRRDALEQLGAWDAHNVTEDADLGVRIARACYRTEMLPTTTYEEAN
SRITPWIKQRSRWLKGFMMTYLVHMRAPKALLRDVGWRRFWGLQAFFLGTLGQFLLAPVLWSFWLVALGV
SHPLEASLPRDMLSVAVGALVFFEVLNLCIWYCGARASGRPVLAFCAPLMPLYFILGCFAAYKALWEVFA
APFFWDKTAHGDHGGTTEH
>gi|99082136|ref|YP_614290.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MSQTKSSTQKDAYGLILDAIDVGMFKPGDRLVENDLADRFGVSRTPIREALQRLETQSLLERDGRSLIVA
SLDHNQMAELYVVRRELEGLAAALAARHATDEEVQVLRDMVEADDALIDNPVELAKANRRFHQQIHLASH
NRYLVQQLDLVHRSMALMATTSLAAEGRGRIAQDEHKAIVAAIANRDEAAAGQALKDHISVAFTTRLKQD
AGARGG
>gi|99082137|ref|YP_614291.1| pyrimidine 5-nucleotidase [Ruegeria sp. TM1040]
MVKQSFSHVEHWVFDLDNTLYHPSARLFDQIEAKMITYVMETLQIDHGAADKLRGDYWRNHGTTLAGLMK
EHDIDPDPFLVAVHDISLDHLEPDQTLAGHIKALPGRKIVYTNGSAPYAERVLAARGLTGLFDGIFGVEH
ADYRPKPERSAFERVFERAGVDTTRAAMFEDDPRNLNAPHAMGMRTVHVAPEAHPGDHIHHHTEDLTAFL
GQLR
>gi|99082138|ref|YP_614292.1| hypothetical protein TM1040_2298 [Ruegeria sp. TM1040]
MTAYTLPPKLSTFERIMFRVPLLGRIWKEVSYGDEENIYYAIATFLSLWGISVMLFGLPGLYLPALALVP
VIWILLILISRG
>gi|99082139|ref|YP_614293.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Ruegeria sp. TM1040]
MNQTCDILISGGGIAGLTAAAGFAARGFSVICVDPTAPVTTREDAGADLRTTAFLQPAKSLLEEAGLWSR
FAPHAAPLQIMRIIDAGGADPEPRVVREFNAAEISELPFGWNLPNWLLRREMLGRIAELANAEFRPGVGT
QSLFTRTNEARVTLTDGSRVHCKLVLACDGRASPMREAAGIDVQTTRYGQKALAFAVTHDTPHENVSTEI
HRTGGPFTLVPLPDLEGRPSSAIVWMETSANADRLAALDEVDFEAEMNIRSCGVLGQLSLASRRTLWPII
SQRASRLVGERLALMAEAAHVVPPIGAQGLNMSLADLRVLMDLADARPEGLGDQAMLNAYEKARHSDIKL
RVSGIDLLNRASMMEARPLRDLRAGGLNALYSLPQVRKMLMQMGLGVR
>gi|99082140|ref|YP_614294.1| aminotransferase, class V [Ruegeria sp. TM1040]
MALLETVDPDGLDEFSVVFTDRSLNHMSKEFQQVMLDINAMLKEVYKADATALVPGGGTFAMEAVARQFA
RDQDALVVRNGWFSYRWSQIFESGGLTKSATVLKARQIGNGAQSPFAPAPIEDVTKAILEQKPSIVFAPH
VETSAGVILPDDYVTRMATAAHEVGALMVLDCIASGCAWVDMRATGVDVLISAPQKGWSASPSAGLVMLS
KRALARLEETTSDSFAIDLKKWRAIMQAYEDGGHAYHATMPTDALRQFRDTMAETKAYGFKRLREAQWKL
GNGVREMLAKKGVTSVAAEGFGAPGVVVSYTDDPQIQNGKKFSDQGMQIAAGVPLAVDEPDGFMTFRLGL
FGLDKLYDVNGTLSRLKTVLDQLL
>gi|99082141|ref|YP_614295.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MTGLDATDLALLRALSQDATQTAGALGRALGLSQPATWRRIKRLEEAGILSHRVLDLDLQKLGFGVTVFV
GVKLATKGRVSLDDFERAVSAIPEVQTVEHVLGFYDYRLRVVARDIADFERVLRRRIMTLPGAGNVDANV
LLSEERRPGPLG
>gi|99082142|ref|YP_614296.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MLDDLDRRILRNLQDDPTQSLPDLADRLGLTSSRLSRRLEKLREGGVLLGVRAVIDWQALGYAVEVSLRV
TLDKTNPRAFDEFIPAAREIPEVLEIQTFLGQVDVRLSVIARDMAHYQALYRDHILQLPNITDIEALMHV
ARITTRTALPL
>gi|99082143|ref|YP_614297.1| ketol-acid reductoisomerase [Ruegeria sp. TM1040]
MRVYYDRDCDVNLIKEKKVAILGYGSQGHAHALNLRDSGAKNLVIALREGSPSAKKAEAEGLQVMGIAEA
AAWCDVIMFTMPDELQAETYKKYVHDNIKPGAAIAFAHGLNVHFGLIEPKEGVDVIMMAPKGPGHTVRGE
YTKGGGVPCLVAVHNDASGSALETALSYCSAIGGGRSGIIETNFREECETDLFGEQAVLCGGLVELIRCG
FETLVEAGYAPEMAYFECLHEVKLIVDLIYEGGIANMDYSISNTAEYGQYVTGPRILKYDETKARMKEVL
ADIQQGKFVRDFMLENAVGQPTIKASRRANDEHAIEATGAKLREMMPWISAGKMVDKSKN
>gi|99082144|ref|YP_614298.1| hypothetical protein TM1040_2304 [Ruegeria sp. TM1040]
MPEIAPRYWAMVAALGLTWGGTFMVVELALRGITPFWLAAGRIGFAALLLTSIWGLRGFRLFETRANWPV
VIFVGLLSSTLPFILISWGLQHVTSGFAGVSMAAIPLMVLPLAHFFAAEPLTPRRLLGVIIGFLGVALLI
GGQAFESNGSDLEWAGRLACLTAAACYSVSSISVRRLPAVDSVGLAAVLLLIGALGILPAAWLVEGPPPA
ISSETWMWLAILGLIPTAGANLLRVLVIRGAGPTFMSLTNYLVPVCAVLFGALFLKEALPSVLLWSLALI
LAGVALSQYGALKRLFGLS
>gi|99082145|ref|YP_614299.1| phosphoglucosamine mutase [Ruegeria sp. TM1040]
MRKLFGTDGVRGKANMHPMTAEMALRIGAAVGRYFRRENDTVHRVVIGKDTRLSGYMFENALTAGLTSTG
MNVLLLGPVPTPAVGLMTRSMRADLGVMISASHNPAEDNGIKFFGPDGYKLSDEVELELEALIEAGVEPA
QAQNIGRAKRIDDARFRYGERVKSSLPRDMRLDGLKVVIDCANGAAHRAAPEILWELGADVIPVGVSPDG
LNINRGCGSTQPAAAAETVVAHGADVGICLDGDADRVVVIDETGTVADGDQLMALLASAWSADGRLSGGA
LVATVMSNLGLERFLNERGIGLERTGVGDRYVVERMRQGGFNLGGEQSGHIVMSDYATTGDGLMAGLHFL
AEMVRRGQKASELARQFEPVPQLLKNVRFEAGQAPLEADQVQTAIAEAEKQLNGRGRLLIRKSGTEPLIR
VMAESEDPVLLNRAVDDVVAAVEAATQ
>gi|99082146|ref|YP_614300.1| dihydropteroate synthase [Ruegeria sp. TM1040]
MSYYRPLVRHGDARPEGAIHLAGSALWFTEVEVLDRSAPPRIVPAGLLPEEIRFRLMSRRAAIAGLDMTQ
PQIMGILNVTPDSFSDGGQFDEVDVACDAALQMVADGASIIDVGGESTRPGAAEVEELAEITRTAPVIAA
IRDQSDVAISIDTRKATVGMEALEAGASLINDVSGFTFDAALAPLAAQAGVPVCVMHAQGDPKTMQDNPH
YENVVLDVYDFLAAQVDQLEAIGVLREQIVIDPGIGFGKTEAHNLALLRNLSLFHGIGCPILLGVSRKGF
IGAIGKEPQAARRAPGSIAVGLAGFAQGVQLLRVHDVAETAQALRLWQATR
>gi|99082147|ref|YP_614301.1| dihydroneopterin aldolase [Ruegeria sp. TM1040]
MSSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEIAPLPADLDDD
VDRILSYDKVTEAIAHELARERLALLETLAERVAERILWEPQAVRAFVRIEKLDRGPGKLGVEIVRSADQ
VSHEADEDVKPHPRLMFLSNAAIDSDNLTGWIDQMECRERPLILCVGAHDLALPQTGHKWTQRRIDLLAI
EQNAWRLAARDSRCKVVETRTELDWAMKNGQICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEE
MIVIGAELPENPGVPLRAHAEEQHTL
>gi|99082148|ref|YP_614302.1| cell wall hydrolase, SleB [Ruegeria sp. TM1040]
MKRKLMWAAVVAATLGGSMASADMGLDALFKQEQSTLQAAPKERMLRFLGGKRQTRTNGVTQVEFTRDFL
DSRPAATGGSEFECLAEALYFEARGETVKGQFAVAEVIKNRVQSAQFPNTFCGVINQGTGRKYQCQFTYT
CDGHKEVIHEPRAFERVAKVARLVLDGVNPKLTQGATYYHTTAVSPRWSRKFTKTARIGVHLFYRDERYR
TASN
>gi|99082149|ref|YP_614303.1| pyruvate phosphate dikinase [Ruegeria sp. TM1040]
MDTTPKSTLITATAPIANQTHGGRAKCLQRLVRLELPVPQTVALSFDAVHEIAEGYMVDVNAILADLRPG
ALLCVRPSSEDPDWGGPGAVLNIGMNDARYVELSDTLGPAAAAALYLRFVQSYAVHVARLDPDVFEDVED
GGPDALSEMLQAYEAEAEEPFPQDPGEQLAAVLRSMARAWEGTSARLLRAAKGAPEDAGLGLIVQEMVPG
LGQGECGSGVLQLVNSQTGLPQITGRYLSQSQGRDALGVDAEAIYLEQDERGPSLEELAPEAFAELKAHA
ALMRRKLRAEMQVEFVIENGRVHILDGVRVPRSSRAAVRIAVRLAEDGIIPAEEALMRVDAYSLNELLHR
QVDPNAKRDVIGSGIAASPGAATGRLVFTATEAQASKSRGEPCILARRETSPEDVRGMHAAAGVLTEKGG
MTSHAAVIGRGLGLPCIVGASRLRFDSRRKQLTAPDGRVFKAGEIITVDGTSGEVLAGEPAMVEAAEDDA
LVTLMAWADAARDIAIRANADTPADAQTARNFNAEGIGLCRTEHMFFDPGRLTVMREMIFAETSSGRAAV
LARLLPMQRKDFRELFRIMEGLPVCIRLFDPPLHEFLPTTTAGQRELSEALGLPVSDVTRRVAEMGEYNP
MLGLRGVRLGVTVPEIYDMQARAIFEATLEASRDGAPVVPEIMIPLVSAKREVELVKARIDAVAAAVKSE
RGADFTYRLGVMVETPRAALRADEIAAHTAFMSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFPEDPFH
VLDVDGVGELLQLGVQRGRMAKPEITLSICGEHGGNPESIAFCREAGFDYVSCSPFRVPVARLAAAQLAI
ADKTGQIAPTYIKN
>gi|99082150|ref|YP_614304.1| glycyl-tRNA synthetase subunit beta [Ruegeria sp. TM1040]
MADLLIELFSEEIPARMQARAGEDLKKRMTDGLVEAGLTYAGAHALTTPRRLTLAIEGLLDHSPTVREER
KGPKVGAPEKAIEGFLRGAGLTRDQLEERDTPKGAVYFATIEKPGRPAAEIIAEVLEDTIRNFPWPKSMR
WGAGALRWVRPLHSILCLLTREEGSEVVPLEIDGVTSGDSTAGHRFMAPARFAVTGFEDYAAKLKRAFVV
LDPKEREAAIWQDATNQAFASGLEVVDDKGLLAEVAGLVEWPVVLMGSIDAEFLDLPPEVLQTSMKEHQK
FFSVKNPKTGRIEKFITVANRETADNGATILAGNQKVLSARLADAKFFWENDLRIAKSEVGVEGWLESLG
NVTFHNKLGTQAARIDRIAALAREIAPVVGADADLAEQAAKVAKADLSSEMVYEFPELQGLMGRYYAQAA
GLPQEVANACELHYSPLGPSDDVPTEPVSVAVALADKIDTLTGFWAIDEKPTGSKDPYALRRAALGVIRL
VLSNDVRVGLKEVFAKAYEGADGSDLLSFFHDRLKVFLRDQGIRHDVIDACIAMEGSDDLTLLVKRARAL
EDFMKSEDGENLLQGFKRANNILSQAEEKDGVEYSFGADKKFVEDPAEAALFEALAANEAAISTAIEAED
FAAAMGGMAALRAPVDAFFEAVQVNSDNPVVRRNRLNLLSQIRKVCGQVADLSRIEG
>gi|99082151|ref|YP_614305.1| hypothetical protein TM1040_2311 [Ruegeria sp. TM1040]
MTGKILSIILIVSGLVAGIAMYYLQVYGFYDEVVAEPGRDVVLMPIGGEAPQAIAYSDFKAIDADSSPIR
YRACFATPLKPAELAQLYELSEARDPRNAPEWFDCFDAAAIGAALKDGRARAFISEKNIEFGVDRIVAVT
EDGRGYVWHELNNCGEKAYDGTIVGEECPKRPQSN
>gi|99082152|ref|YP_614306.1| glycyl-tRNA synthetase subunit alpha [Ruegeria sp. TM1040]
MTQTTAPRSFQEIILRLQTYWASKGCAILQPYDMEVGAGTFHPATTLRSLGSKPWAAAYVQPSRRPTDGR
YGENPNRLQHYYQYQVLIKPSPPDLQELYLGSLEAIGVDMDLHDIRFVEDDWESPTLGAWGLGWEVWCDG
MEVSQFTYFQQVGGHDCHPVSGELTYGLERLAMYILGVDHVMDMPFNDPQSPQPLSYGDIFKQTEEEYAR
WNFDVANTEVLLRHFEEAETECAAILAQEHTDPKTGKRIIMAHPAYDQCIKASHVFNLLDARGVISVTER
QAYIGRVRALAKQCADAFVLTEAGGHTEETAGETAA
>gi|99082153|ref|YP_614307.1| peptidoglycan binding domain-containing protein [Ruegeria sp. TM1040]
MKNLFASVLWAVILCLSALSGASQAQQSSAGGVWIQVAARPSLQQAQEEARNFAARLPDVSGYALGGGWY
GIVIGPYARPDAEQVLRVYRAEGQIPRDSFITFSSNLRSRFYPVGADADTGTTAPAPLTTSDAETAPPEP
AEDATSEVTPEVVVVDETPAEARQSERALTREERMDLQIALKAAGFYTSGIDGAFGRGTRASMSDWQVAR
GYEPTGVLTTAQRQALMDEYNAPLISTGMASYTDERAGIRMDLPLGEVAFSRYEPPFAHFDTAGDLGARV
LLISQPGDRRTLYGLYDIMQTLEIVPLEGPRERSGDRFTLEGRNSDIVSYTEARLDNGEIKGFTLVWPAG
DEARRARVLSAMQESFTRLENVLDPAAGMDDAQSIDLVSGLEIRKPRLSRSGFFVSGDGVVVTTADVVNG
CGSVTVDRDVKAEVLLRDSEAGIAVLKPSEALAPMATAPLAANTPRLRSALAVSGYSYGGILGAPSLTWG
ALSDLKGLQGESHLARLDLTAQPGDAGGPLLGKDGTVHGMLLPEATNGPTLPEGVRFALKGEVIRMALEQ
AGVGLPATEAAATGELPISILQKEATGLTTLVSCWE
>gi|99082154|ref|YP_614308.1| ribose-5-phosphate isomerase [Ruegeria sp. TM1040]
MTASKRIVLSSDHAAIALRRTIAKHIEALGYTVTDLGPTTPESTHYPKHGEAAARHVAAGESDLGILLCG
TGQGIMMAANKVKGIRCGVCSDTFSAQMIRAHNDANMLSIGARVVGEGLALEIVDAFLKTEFEGGRHGTR
VDMITEIEG
>gi|99082155|ref|YP_614309.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MHVVVTGSSRGIGRELKTRLSERGDRVTGTSRDHSSGTRLDVSDPGQQARFAAQIKGDPVDLLICNAGVY
LDKSMALKDYTAEVWAKSLAVNVTGVFLTVQAMLPNLKLADEPKIAIISSQMASHARAPGGSYAYRASKA
AALNIGRNLATDLKPEGIAVGIYHPGWVRTDMGGQDGDITVEESALGLINEFDVLSLDTTGCFHTWDGQV
HAY
>gi|99082156|ref|YP_614310.1| hypothetical protein TM1040_2316 [Ruegeria sp. TM1040]
MIRYALKCAEGHGFESWFQSAAAYEKLRGAGMVACTLCGSTEVEKALMAPRVRPGRKAASAPAGEAVATP
SAGNVPSQNLPAQTAPAAPAPTSLAAPSNELEAAIAELKKQVEANSDYVGKDFVKEARDMHLGDAPARSI
HGEAKPEEAKALIEEGVPVVPLPFAPTRKTN
>gi|99082157|ref|YP_614311.1| hypothetical protein TM1040_2317 [Ruegeria sp. TM1040]
MGELPGEILEPSARSLSLRDVDAELDAIAVRYRAAGSFGMRLLNALGGQGEDLMRRLPAPVQGAIEAAVL
QALHLSVRGAALSRRVVPDQPARTNRWVSTTMGMVGGAAGLPGALVELPATTTFLMRSIQGVAQDYGFDP
NAKSVRFDAVEVFAAAGPMAHDDGADTGFLTLRLGLSGASLSQLIAVVAPRLAVALGPKLAAQMVPVLGA
VAGGSVNYVYSGYYQEMAHVHFALRRLALEADTPYPQMVERLQQRLLT
>gi|99082158|ref|YP_614312.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MITIAPETPEDSWEVEALYDLCFAPGRTALSSYRLRDGVAPVQRLSQVARDSDGILAGAIRFWPVHVGTQ
DALLLGPVAVHPTRQGEGIGAALIRDSLWKAEDSHWQRVILVGDAPYYQRFGFERLDGVEMPPPTNPERV
LGLALNPGAWGGVRGQVTRWSGAAQG
>gi|99082159|ref|YP_614313.1| hypothetical protein TM1040_2319 [Ruegeria sp. TM1040]
MFYRPEDGHGLPHNPFNAVVTPRPIGWISTRSGAGVNNLAPYSFFNAVAYVPPQVMFASTSTKDDQDGTK
DSIANIRETGVFCVNVVEYAMRDAMNKTSAALDKGIDEFAHAGLEAVPCETIDCARVAGVPAALECRLTQ
IVDLPGEANKVAFGEVVGVHLRDDCLVDGVFDVTRYQPLSRLGYRDYAKVSDPFSLSRPDD
>gi|99082160|ref|YP_614314.1| chloramphenicol O-acetyltransferase [Ruegeria sp. TM1040]
MPLPDPRLRHPIVLPDGTPHAGTVLLARVVENPNFIVGDYTYASDFEPPRDWGSHLAPYLFAGAREQLKI
GRFCQIAHGVKFITASANHAQEGLSCYPFPVFDPAQMAGFQPDTRDTVIGNDVWIGYGTLILPGARIGDG
AIIGAGAVVRGTVPPYAIMTGNPASIARHRFSKPQIARLLALKWWDWPADLILRAEPAITSGDLDMLEAL
APD
>gi|99082161|ref|YP_614315.1| sulphate transporter [Ruegeria sp. TM1040]
MTRGVLGLLAKNISPPNLSIMQDEGFTVARVRTELLSGLTVALALVPEAVAFAFVAGVHPLVGLYAAFLV
GLITALIGGRPGMISGATGALAVVMVALVAEHGVEYLFATVVLMGILQVIAGVMHWGKFIRLVPHPVMLG
FVNGLAIVIFLAQLTQFKQPGTGGEEWLAGPQLLMMLGLVVLTMVIIWGMPKLTKVIPAPLAGIGITAII
VIAFGLDVPRVGDMASIEGGLPSFHVPMVPFNMETLQIILPYAVILAAIGLIESLLTLNLVGEITGKRGG
ASQECIAQGTSNIVTGFFGGMGGCAMIGQSMINVNSGGRTRIAAIAAALFLLLFIVAASPLIEQIPLAAL
VGVMFMVVIGTFAWNSFKIMTKVPLTDAFVIVLVTVVTVMTDLAIAVVVGVIVSALAYAWNNARRIHAIT
RDSVSEKGAKVYEIQGPLFFGSTDGFIELFDVENDPDVVIVDFAASRVVDQSALQAIEAVAGKYEAAGKA
LQLRHLSRDCHELLSKAGHLMVDSDDDPEYGLAVDYSVKTGVLGGH
>gi|99082162|ref|YP_614316.1| hypothetical protein TM1040_2322 [Ruegeria sp. TM1040]
MHFKSWDDISPPPNAAEQQLKAAAEAGVLCELGPRDQIPEEPANWQTLTAAQEARHIRAEVLRLILLNGD
GCDVTKRSVAMFGAYISGSLDLTNCIIPGNLLLYNCPLE
>gi|99082163|ref|YP_614317.1| hypothetical protein TM1040_2323 [Ruegeria sp. TM1040]
MSCKGTTFNTPKGMALTLRDAEITGGLYLSNITQIRGILDLSDAKTSILVDNPHSYPPTGALILDGFTYD
RIIGSTDSKTRLEWLAKGDRWNGEFFPQPYKQLAKTLHDMGHEADARQVRITLACKLRQEARAKLRITPN
GDLSTGLHSIWRDILRLCLGGKDSISLLLTAHGYKPQRSLYALILLFAAATFPAQWAWDEGSFAPNSGPI
LLSEGWQELARDDDIQNPAAEWANRNAIPGKDWETFNRYAYAADVVIPIVEFGQTEAWAPSTERGPWGYH
LWWLRWGFTTLGWIVTALGAAALTGLIRRD
>gi|99082164|ref|YP_614318.1| 5'-methylthioadenosine phosphorylase [Ruegeria sp. TM1040]
MTETLIAVIGGSGIYEIDGLEGAAWTTVETPWGTPSDQILTGRLEGVKMAFLPRHGRGHVHAPSDVPYRA
NIDALKRLGATDVISVSACGSFREHMAPGDFVIVDQFIDRTFARAKSFFSSGCVAHVALAHPTCPRLSDA
VEAAAGAAGINTHRGGTYLAMEGPQFSTLAESKMYREHWGADVIGMTNMPEAKLAREAELCYASVAMVTD
YDSWHPDHGEVDVTAVIATLKGNSEKGRALIKGLPARLGAERAPCPHGCDRALEYAIMTAPEKRDPALLA
KLDAVAGRVL
>gi|99082165|ref|YP_614319.1| adenine phosphoribosyltransferase [Ruegeria sp. TM1040]
MSTSKTVKDYIRTIVDFPHEGIMFRDVTTLFADPRGFRMAVDQMLHPYAGQRIDKVVGLEARGFILGGAI
AHQLGTGFVPVRKKGKLPGATISQEYKLEYGEAVVELHKDAIQPGEKILVVDDLLATGGTAGAGIKLIEK
LGGEIISCSFIIDLPELGGRKHLQSLGMDVHVLCEFEGL
>gi|99082166|ref|YP_614320.1| beta-Ig-H3/fasciclin [Ruegeria sp. TM1040]
MIRKFALSTIASLAVATAAFADGHSKDIVDIASGNDNFDTLVAAVSAADLVDTLKSEGPFTVFAPTDAAF
EALPEGTVETLLKPENKDQLIAILTYHVVPGKVMSSDLTDGMKAATVQGSEITIDLDNGAMVDEASVVQA
DIEAENGVIHVIDKVIMPGS
>gi|99082167|ref|YP_614321.1| FAD linked oxidase-like [Ruegeria sp. TM1040]
MTLNPATPAFLDTLSARLPADTLRRPEARHLEEPRGRYAGQAAAVALPRSAEEVAEIIRAAHAARVGVVP
YGGGTGLVGGQVMTEGATPILLSLERMRGIRALYPEENVLIAEAGAVLADVQSAAAEAGRLFPLSLAAEG
SAQIGGNLATNAGGVNVLRYGNARDLCLGLEAVLPSGEIWHGLSRLRKDNTGYDLRNLLIGAEGTLGVIT
AAALKLSPIPANAGTAIFTVRDPAAAVALLTRARDAVGEGVSAFELIHRQGLEFLAEKLPELRQPFESHP
EWCVLIELGLGKGQDAEAALADLFEQAMDAELTDDGVIAQSEAQRQALWALREHIPEANRLIGSVSSHDI
SVPISRIPEFIPAGWKAIANLDPSLRINCFGHLGDGNLHYNVFPAPGRSRADYEDLRGDVKRIIHDLVYD
YGGSMSAEHGIGRLKVGDLERYGDPVKLAAMRAIKEALDPHGIMNPGAVVV
>gi|99082168|ref|YP_614322.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MLLARRTVKLETERLTLRPPVHADFRYWAFLRQQSKDHLIPWEPAWSPDHLSRKSFTNRVYWAKRSIAQG
SALPLFLIRREDDHLVGAITLDNIRRGPAMAGTIGYWTGVQFARRGYMREAIGAVVHHAFTRLDLSRIEA
ACLPENAASRGLLERSGFKYEGVAQSYLQINGRWRTHVLYAALRNDRRGKTTAGQA
>gi|99082169|ref|YP_614323.1| peptidase [Ruegeria sp. TM1040]
MTVKQDTLPNGFRIVTEYMPGLQSAALGIWVSAGGRHERLEQNGVAHFLEHMAFKGTKRRSALQIAEAIE
DVGGYINAYTSREVTAYYARILKDDVDLALDVIGDIVLNSVFDEREIEVERGVILQEIGQALDTPDDIIF
DWLQEESYREQAIGRSILGPAERVRSFNKEDLTRFVAEHYGPGQMILSAAGAVDHDRLVKAATEMFGHLE
PKQQDVIECARFTGGEARHDKALEQAHVALAFESPSYRADDIYAAQIYAAALGGGMSSRLFQEVREKRGL
CYTIFAQAGAYEDTGMMTIYAGTSGAQVSDLLGITVDELKRSADDMSDAEVERARAQMKAGMLMGLESPS
NRAERLARLVQIWDRVPSLEDTVAKIDAVTTADVRAMAARISREAPAALALYGPVAEAPRLEEIARRRAA
>gi|99082170|ref|YP_614324.1| threonine synthase [Ruegeria sp. TM1040]
MKYISTRGQAPELTFEEAMLTGLARDGGLYVPAEIPTLSAEEIAGFAGLPYEEVAFRVMWPYVSGSFSEE
EFKGIIARAYAGFEHAARAPLKQMAPNHFLLELFHGPTLAFKDFAMQLIGQLFQVALKRRGDSVTIVGAT
SGDTGSAAIEAFRGLDAVNVFIMYPHGRVSEVQRRQMTTPQDANVHALAVDGDFDDCQAAVKDMFNDFDF
RDSVHLAGVNSINFARVLAQVVYYFTAAVALGAPHRKVSFTVPTGNFGDIFAGFIARQMGLPIDQLVVAT
NQNDILHRCLSGEGYFKGETIPSISPSMDIQVSSNFERALFYAYDQDGAAVAQLMDELKTGGGFNVSQGA
MQALSEIYSSGRASEEETSATIKSELAASGELLCPHGAVGVKVANEHLKDGVPMVTLATAHPAKFPAAVE
AASEVHPPLPPRMADLYDRSERVTRIANDLGAIEDHIRKHIAN
>gi|99082171|ref|YP_614325.1| SURF1 family protein [Ruegeria sp. TM1040]
MRRVIFLGVVGGLGFVALVSLGLWQLQRLAWKEGVLATIETRIAAEPVSLPEAPDPEADRYRAVRFEGEI
LPEELHVFWVTEAEGAGYRVISPFVTDEGRRILVDRGYIRATDKENTRPTGRAELTGNLLWPDEGDWTTP
PPEVDTNILYARDIAYMSERLNTEPLLVVVRTGAEKPTPLPVSTKGIPNDHLQYVITWFSLALIWAAMTA
AFLLRTRAKT
>gi|99082172|ref|YP_614326.1| cytochrome c oxidase, subunit III [Ruegeria sp. TM1040]
MAHAKNHDFHILPPSIWPLLSSLGAFVMLFGAVLWMHDYTAWLFWAGLVAVLYSAFCWWSETIAENKAGD
HTPVVLIGLRYGFILFVMSEVMFFFAWFWSFFKHAMYPMEEYVGTEYVAPDIYPVDAFHLPLINTLVLLL
SGCAVTWAHHALVHDNDRKGLVNGLAIGIALGIFFTALQAYEYVHLLHEGWEFGGDEFYSNFFMATGFHG
FHVILGTIFLIVCLIRAMRGDFTPKSHAGFEMAAWYWHFVDVVWLFLFVAVYIWGTAGLAH
>gi|99082173|ref|YP_614327.1| cytochrome C oxidase assembly protein [Ruegeria sp. TM1040]
MALNGPQKTVVQLVGVVVLMGGLAWASVPFYDWFCRVTGFGGVTQVAETGSDQVLDQTIKVRFDASKDRG
MPWEFKPVERIMELKIGETGLAFYEAYNPTDRPVAGQASYNVAPFSAGYYFDKIQCFCFNEQVLQPGERV
MMPVTFFVDPEIIEDPEAKYVHTITLSYTFHEIDLPEGYAALDTGDTSGAETELN
>gi|99082174|ref|YP_614328.1| hypothetical protein TM1040_2334 [Ruegeria sp. TM1040]
MSLRKEHEIHNRRKGRNVGVGLLLGGFVVLVLALTMVKVTSTGFSFPETQGTE
>gi|99082175|ref|YP_614329.1| protoheme IX farnesyltransferase [Ruegeria sp. TM1040]
MTDASINASMTREEEASLGDYFALLKPRVMSLVVFTAFVGLMAAPIGVHPVIGFCAILFIAIGGGASGAL
NMWWDADIDQVMKRTKGRPIPAGKVDKGEALSLGLALSGLSVIMLALATNVFAGAFLAFTIFFYVVIYTM
WLKRATPQNIVIGGAAGAFPPVIGWIAATGSMSVEPWLMFALTFLWTPPHFWALALFMRNDYDMADVPML
TVTHGRRSTRKHILVYTVILAAFALTTAFTSVGGPIYLTTAVVLNALFLKGAVQIWRRDEEICESDNFKI
ERSFFKLSLLYLFLHFGAILAEALLKPYGLGGW
>gi|99082176|ref|YP_614330.1| cytochrome c oxidase, subunit II [Ruegeria sp. TM1040]
MKNALTLSGFIAALSSLPAMAQEGLETIGKPTDGNLGFQPAASELAEGIHKLDYMILIIITAICVFVGGL
LLYAIVRFNRRANPKAASFTHNTPIEIAWTVVPILILIVIGSFSLPELFRQQEIPEGDVTIKVTGYQWYW
GYEYVDHDFAFDSYLIGHPATLDESTRPADADVTPFVYDEAMKLKLEEAGYAGDEFLLATNTAVVVPVNK
TIVMQVTAADVIHSWALPSFGVKQDGIPGRLAELWFKPTKEGVYFGQCSELCGKDHAYMPITVKVVSEEA
YQEWLNGAIEEYAGLPQPYDVASK
>gi|99082177|ref|YP_614331.1| microcin-processing peptidase 2 [Ruegeria sp. TM1040]
MDTTAFSPFETTLPEDEALPLLRDALAGADDGEIFAERTKSEALVFDDGRLRTASYDAAEGFGLRAVRGE
VAGYAHSTTMSISALRRAAETARLAVGAGGGTMAPAPQATNQKLYGDLDPIAAQAFPVKVETLREIDSFA
RDLDPRVVQVSATLAASLQEIEILRADGTRVRDVRPMTRVNVSIIVEDGGRRESGTAGGGGRVGLDGLIA
PEDWQAKAREALRIALVNLDAEPAPAGELDVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFAGLMGQRI
AAPGVTVLDDGTIPDRRGSITVDDEGTPSQKTTLIEDGILVGYMQDRQNARLMGVEPTGNGRRQSYAHAP
MPRMTNTYMLGGEATPEDLVKEVKDGIWAVGFGGGQVDITNGKFVFSCTEAYRVKDGKVGAPVKGATLIG
DGATALQQIRGLGNDMALDPGMGNCGKQGQWVPVGVGQPSVLMGGLTVGGSAT
>gi|99082178|ref|YP_614332.1| DNA processing protein DprA, putative [Ruegeria sp. TM1040]
MTGEAYSSTHPPLPPTTEDQRYSWLRLLRSRGIGTVTFYRLLAEYGSAQNVLEKLPELAATSGVKGYKIY
SKDALDAEFENAKAANARLLCIGDPHYPAPLASLPNPPPALWAIGNLSLVTRPAIALVGARNASSLGRRM
AYGLARDLGDAGYVVVSGLARGIDACAHEGALASGTIAVQGGGVDIIYPSENTPLAMTLAEQGLRLSEQP
MGLQPQARHFPPRNRIIAGLALATVVVEAAIKSGSLITARDALDLGRDVMAVPGHPCDGRASGGNLLIRD
GATLVRHAEDVIEALPPLNAHRPPQRPSVQDLPSPPPERRNLRQTAALHQQILDRLAAAPTPEGQLIKDL
GSPARKVRTVLTDLELSGEIGREPGGVIIKKR
>gi|99082179|ref|YP_614333.1| DNA topoisomerase I [Ruegeria sp. TM1040]
MPVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKNGSVDPEDDFAMTWEVGNDSKKHVRAIAEALK
DDNALILATDPDREGEAISWHLQEALTKRRSIKKDTDVKRVTFNAITKDAVAEAMKNPRDVDMPLVEAYL
ARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVEREMEIEAFNPQEYWSVRANLATPRGQSFEA
RLTVLGGEKLDKFSLANSTAAELAVQAVSSRKMSVLSVEAKPAARNPSAPFMTSTLQQEASRKFGMGAKQ
CMNAAQRLYEAGLITYMRTDGIDMAPEAVSAARDEIAKRYGQEYVPGEPRIYKNKAKNAQEAHECIRPTD
MSRDAASLKVSEDDQRKLYDLIWKRTLACQMAGARLERTTVDIGSDDKQVVLRATGQVVMFDGFMRVYEE
GRDDVVDEDDKRLPQIMQGEALKFAGSLAAQAEKAGKDGSVLSQDGATLALQHHTQPPPRYTEATLVKRM
EELGIGRPSTYASVITTIQDREYVRKDKNRLFPEDKGRIVTIFLLNFFKRYVEYDFTAALENQLDDVSAG
GKDYKELLDSFWRDFSAAISETSDLRISEVLDVLDEALAPQLYPPREDGGDPRICPKCGAGQLHLKTSRT
GGFVGCGNYPECNYTRPISGEGAEGYERVLGEDDGDEIHLKSGRFGPYVQRGEATPENKKPPRSSLPKQG
KDYLPGWGPNEITLEQAVTLLTLPREIGAHPEGGVVSSNLGRFGPYIMHQRPDEEKPVYVNLKETLDVFE
IGMNRAVEMLAEKRANPGRGRSAAAKPLRELGEHPDDKAPVNIMDGRYGPYVKWGKVNATLPKDTEAKDV
TMEMAVELLNEKAAKSGKKKAPAKKAAAKKTTAKKTTAKKAPAKKKEAKASGD
>gi|99082180|ref|YP_614334.1| 3-oxoacid CoA-transferase, subunit A [Ruegeria sp. TM1040]
MKKVYGSAAEALDGVLFDGMTIAAGGFGLCGIPELLLEAIKDAGTKDLTFASNNAGVDDFGIGILLQTKQ
VKKMMSSYVGENAEFMRQYLSGELELEFNPQGTLAERMRAGGCGIPGFYTKTGVGTQIAEGKEVKVFDGE
EYILERGIFADLSIVKAWKADETGNLVFRKTARNFNPPAAMCGKICVVEVEEIVPTGSLDPDHIHLPGVY
VHRLIQGEHEKRIEKVTTRPREEA
>gi|99082181|ref|YP_614335.1| butyryl-CoA:acetate CoA transferase [Ruegeria sp. TM1040]
MAWDRNQMAARAAQELEDGMYVNLGIGIPTLVANYVGDKDITLQSENGMLGMGPFPFEGEEDPDLINAGK
QTITELRRTAYFDSATSFGMIRGGKIAAAILGAMEVAENGDLANWMIPGKLVKGMGGAMDLVAGVGRVIV
VMDHANKHGESKLLKECTLPLTGKGVVDRIITNLGVLDVVEGGLKIVEVAEGVTEDELRAATEATIVN
>gi|99082182|ref|YP_614336.1| lytic transglycosylase, catalytic [Ruegeria sp. TM1040]
MSVKRGLAICCGLVFAALAQAQEAPAPFADFEAKRVRPPAPGTQKRITVQIEPKAPKVGEESASPQGESD
VGSVPTAPQARYAWFWDEVGADLAGASPGRLQSSLAVLEARNDIATPRLQELQSMISNYGVSLLTSTIGT
EVSPALVLAVMAVESGGKPDAVSRVGAEGLMQLMPDTATQFGVDDSFDPKQNIAGGVRFLDQLMRDFSGD
PVLVLAGYNAGAGAVREHGGVPPYAETRDYVPKVLAAYRLARNLCTTPPIMISDGCVFQTMK
>gi|99082183|ref|YP_614337.1| hypothetical protein TM1040_2343 [Ruegeria sp. TM1040]
MIKFIKNFRKDESGAVTVDWVVLTAAVAVLGTLVYSQISGSIETATAATGTFLGANGSSSY
>gi|99082184|ref|YP_614338.1| hypothetical protein TM1040_2344 [Ruegeria sp. TM1040]
MKTLKTFRDSEDGAVTVDWVVLAAMVVALGALAGTAMNTEVTAFLGTLAGDVEAFVTGAHNGTF
>gi|99082185|ref|YP_614339.1| Flp pilus assembly CpaB [Ruegeria sp. TM1040]
MRAAFGLVLIVGVALAGGAVMMAKNYIEAYQHALAQERSNRDAAVPTVNVFVANKTLTYGEELTKESVRS
VAWPENALPEGVFHEEAELFPSDSPKDARFVLRTMEKNEPLLAVKVTAPGEDAGITSRLEKGMRAFAIRV
DVASGVSGFLRPGDRVDVYWSGQPPARGGQELGGEVTRLIQSNIELIAVDQMSGGDFSSAIIARTVTVKA
QPEEVARLAQAQATGRLSLALVGAQDDTIASLVEVDQRALFGLGDLEAAEPVKEDRVCTIRNRRGAEVVE
IPIPCTD
>gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040]
MKHEVAHISRKIGAQRPHIRGVIGKAGHMSIRRYCAAALTGLALLFAHSPSPAVAQGISVLKKGTNAVLD
VPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDGSGGLITNVDVRVAADVS
EFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQRALDLAERYAPDRVSNLMTVGGIQQVMLKVRFA
EMERSVSKSLGGSMLIRSSDGAIATGSFQNRGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQFNVL
LEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVPVAQEDGVITVEFKPFGIELNFIPRVVDGDLINL
ELKAAVSAIDTTNSATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDEFRDGAAQVPWLGDVPVLGA
LFRSADYARNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNLFLFGQTERAQAGAAGEVANQDFNG
SYGYLLD
>gi|99082187|ref|YP_614341.1| OmpA/MotB [Ruegeria sp. TM1040]
MLKYAAILGLALATGACAYKEAGEPLDPKYFGSANANNTAVLSGDRSYRVQLATRFANEVPSTINFDFDS
ARLDGEARRVLDTQAKWIRQFPEVRFRVYGHTDAVGSQTYNKRLGLRRARAAVNYLVSRGISRSRLEAVA
SFGETQPLIVTDQRERRNRRTVTEVSGFVAARVNELDGKYAAVIYRDYVESAVSPTTISAKTALTDE
>gi|99082188|ref|YP_614342.1| response regulator receiver protein [Ruegeria sp. TM1040]
MTSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETLEFVALAIDAE
DEDNLPLMIEIITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPLPEQELAAAIDRLRKPEEAPA
PAAAPQRAHKLHADSQREGAVIVTQGLAGGTGASTFAVNLAWELAELNSGDRPSVCLLDLDLQTGSVSTY
LDLPRREAVMEMLSETEAMDEDIFGQSLISFQDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVV
IDMPHTMVQWTETVLNLAHVYFAMIELDMRSAQNALRVKRALQSEDLPFEKLRFLLNRAPRFTDLNGKSR
VKRLAESLGISIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLAKNLHELGQAEAEAA
>gi|99082189|ref|YP_614343.1| type II secretion system protein E [Ruegeria sp. TM1040]
MFSKYKKQSSAPAAPAAAPAAAPKPAASPSAPAAGVKAVLRRPDQRNAAAAAPQDRERKRKERLSEIKID
LHRELLENLNLAALEKASESELRSEIAAISNEVLQEKSIVLNREDRQQLMKELYDEVTGLGPLEALLKDD
TVSDILVNGPQQIFIERAGKLELSDITFKDEKHLMRIIDKIVSAVGRRVDESNPYVDARLQDGSRFNAMV
PPIAVDGSLVSIRKFKKDKLQIDDLVNFGAFTEEMAAYLQAAVSTRLNVIVSGGTGSGKTTTLNALSSFI
DNSERILTIEDTAELQLQQTHVGRMESRPPNVEGKGEVSPRDCLKNALRMRPDRIIVGETRGAEVIDMLQ
AMNTGHDGSMTTIHANSARDGISRLENMIAMAGIEMPIKAVRSQIASAVNLIVQASRLQDGSRRMTSITE
ITGMEGDVISMQEIFRFQRVGLTPDNKIIGHFTATGVRSHFSERFRLWGYDLPASIYEPTVMESR
>gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040]
MEFGIEPLIYGLIFIGVLVLVEGIYLVAFGKSISLNSRVNRRLEMLEKGGNREQVLEQLRKEMQQHLKSQ
SIPLYSLLAEKAQKAAIAFTPIQLILVMCGLTGVAFIGLSVGTQAALPVRVLGSVIIGVGAVFFWVNSKA
KKRMAKIEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVEDPLATEFGIIADECAYGRDVGEALKEMAER
LDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQWSGKFLSGFPLFVLAGTL
VSDPHYYDNVIDHPWFMPACFIVGGMLTANIFVMRKLTNIQV
>gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040]
MDPLTLVQDLLIQHLGEFGPLMAVGFLGLLLVVVAAFLLFNQPEDPLKKLQRNLSADQNAKPQNERLRQA
SRNEQLQKFANFLEPQDAEELSAMQLKLRQAGYQSKDAVRLFHFLQFALGLAGLGFGLFLVYVLNADVEY
TTNQLAMRVLGPGAAAYYLPRYWITRRIEERKQAITRAFPDALDMMLVCVEAGQSLDQSIVRVGKELQAS
YPELAEEFEIVAHEMKAGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRV
MRAEEAANKLPTKMTLATMGLTVPPLLAILIAPSVQGLGNIGK
>gi|99082192|ref|YP_614346.1| tetratricopeptide TPR_2 [Ruegeria sp. TM1040]
MQFRNGRTHLFRLVSPTAAISALALMAACVSGQGQPLKPVSPNGVWAPGVDQRGESVRALEVGHRLLAAD
QYELAIEAFNRAALEEGLTAEVLSGLGSANLGLGRLGQAETLLRQAVDKEPQWPEALNNLGTVLLEKGEY
AEAEQILRRAYALDNGQSDAIRDNLRLALENLDNTGHTAPTGDQDKLVRKGGGVFLIETTP
>gi|99082193|ref|YP_614347.1| tetratricopeptide region [Ruegeria sp. TM1040]
MRHMGLLAAGLIGALSLTACSKEIDKEAVDRALQDVNVVDESNLNSVVLNSADPNEAVSYFQRSVKQSPD
RIDLNRGLASSLIRAKRYTEAAAAWQRVVDLPEAQSADSVELADALIRNNEWDKARQVLDTVPPTHETFK
RYRLEAMVADSEQNWKASDSFYETAVGLTTKPAGVFNNWGYSKLTRGDFSGAERLFGEALRQDPSLFTAK
NNLVLARGAQRNYSLPVIAMTQTERAQLLHTMALSAVKQGDVSTGEGLLREAIETHPQHFDAAARALEAL
ENG
>gi|99082194|ref|YP_614348.1| hypothetical protein TM1040_2354 [Ruegeria sp. TM1040]
MHFPPEAALWFLPFVVPLCYVVALNDLRSMRIPNWTVDTLGLIYILLGLLVMPTWADYGWQLLHLPVGIA
IGYLFYASGLVGAGDAKFAGAAAPYVAFADLKLIMIIFAITLLSGFLAHRLARHTPLRRLAPHWQSWNTG
AKFPMGLCLGATLAIYLGLAAFVPV
>gi|99082195|ref|YP_614349.1| hypothetical protein TM1040_2355 [Ruegeria sp. TM1040]
MNMQNQTVMAPPPPKGLAEMRLPLVMMRDILLKTMFRKNLDMVTDLAGAICLPTSVTQELVDLARGQKLL
EATGTLNANSGNEMGYQLTDAGKARALDALSQSEYFGAMPVPLDVYREQVKRQSIRNIMVTRQQLTSAMG
HLILPDSLLDHLGPAVSAGRSILMYGPPGNGKSSISNGIRDALGDRVYVPRAIEYAGQVITVYDPIVHTE
VAAEPVDPNALRKRRRFDERYVCCERPTVVTGGELSLSMLDLVYNPTARTYQAPLQLKSTGGIFIVDDLG
RQAESPQALVNRWIVPLEESKDILALQSGEKFEVPFDTLVIFSTNFHPNEIFDQAALRRIFFKIKIDGPD
QENFLKIFAMVARKKGMPLDEAALVHLLKTKYPTIDNVYANYQPVFLIDQMISICEFEGIPYQMSPELID
RAWANMFVRDEVIVK
>gi|99082196|ref|YP_614350.1| methenyltetrahydrofolate cyclohydrolase [Ruegeria sp. TM1040]
MAAEIIDGKAFAAKVRGQVTEHVTRLKEEHGITPGLAVVLVGEDPASQVYVRSKGKQTVEVGMNSYEHKL
DADTSEADLLALIDQLNKDSEVHGILVQLPLPKHLDEDLVINSIAPEKDVDGFHISNVGLLGTGQKSMVP
CTPLGCLMMLRDYHGSLSGLDAVVIGRSNIVGKPMAQLLLGDSCTVTIAHSRTKDLPEVVRRADIVVAAV
GRPEMVPGDWIKEGATVIDVGINRIDAPEKGEGKTRLVGDVHYESAAARAGAITPVPGGVGPMTIACLLA
NTVTACCRANNLSEPEGLTA
>gi|99082197|ref|YP_614351.1| chorismate mutase [Ruegeria sp. TM1040]
MTHRKPPQDCVDMTELRQAIDAIDVELVKLLRARVDYIDRAVTLKQANGWPARIQSRVEEVVSNACQTAD
EEGLDTELVERIWRDMVDWSISREAREIPEI
>gi|99082198|ref|YP_614352.1| formate--tetrahydrofolate ligase [Ruegeria sp. TM1040]
MSYKSDIEIARAANKLPIQEIGAKLGMKNDDLLPYGHDKAKVSQEFINSVQGNEDGKLVLVTAINPTPAG
EGKTTTTVGLGDGLNRIGKNAMICIREASLGPNFGMKGGAAGGGMAQVVPMEEMNLHFTGDFHAITSAHS
LLSAMIDNHIYWGNEQEIDIRRVAWRRVVDMNDRALRQITASLGGVSNGFPRETGFDITVASEVMAILCL
ANDLKDLEKRLGDIIVAYRRDKTPVYCRDIKAEGAMTVLLKDAMQPNLVQTLENNPAFVHGGPFANIAHG
CNSVIATKTALKVADYVVTEAGFGADLGAEKFMNIKCRKAGIAPSAVVVVATVRAMKMNGGVAKADLGAE
NVEAVKNGCANLGRHIENVKSFGVPAVVAINHFVTDTDAEINAVKEYVASHGVEAILSRHWELGSEGSAP
LAEKVVELVEGGGANFGPLYPDEMPLFEKIETIAKRIYRADEVLADAKIRNQLKEWEEAGYGHLPVCMAK
TQYSFSTDPNLRGAPTGHSVPVREVRLSAGAGFIVVVCGEIMTMPGLPRTPAAESICLNEEGLIEGLF
>gi|99082199|ref|YP_614353.1| MOSC domain-containing protein [Ruegeria sp. TM1040]
MPVLRETQFSAEITWLGMVPADTGIQAQPRTELDLLFSGVAGERHEGAQRPSCVRVKNLYVPGTEIRNTR
QLTILSEEELALIAAEMGLEALDPRYLGATVVLRGIPDLTHLPPASRLQGKNGVTITVDIENRPCILPGR
EIEKDHTGFGPKFKTAAENRRGVTAWVERPGRLALGDQMRLFVPDQPAWAAER
>gi|99082200|ref|YP_614354.1| hypothetical protein TM1040_2360 [Ruegeria sp. TM1040]
MYSQSPQEVSASRAEAAFHPRSAPFIFACLITLAVGVALWGAAAHYPAFQDALHEDGPVEKVSAVLWGLC
AVMVLYFVGGTALRTQWQLSALFFLLCGRELDFDKRFLSEGILQLRLYSGGAPLWEKVIGIAIIALVLLV
VWRLLRVNLPELLKGLRQLSLWSWGGALAVSAIVVAKGVDGIGRKFADFGVILDPTLIARALVYEELLEL
FAAAIVAWSICHFEGQRRRARGGRSMACCS
>gi|99082201|ref|YP_614355.1| ATP-dependent metalloprotease FtsH [Ruegeria sp. TM1040]
MGNARNIAFWVVLFLLVVTLFNLFSGSGSTLQSREKTYSEFVTAVEGGNVSTVTLDGEQVRYTTSDGQSY
TTIKPGDAEVTQMLIDNNIPVRAEKQQQSTFQSFLLTLLPFLLLIGVWIYFMNRMQGGGKGGAMGFGKSK
AKMLTEKHGRVTFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGE
AGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGNDEREQTLNQL
LVEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKILGVHARKTPLGADVDLRI
IARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDFENAKDKVMMGAERRSMVLTADQKEKTAYHEAGH
AVVGLKLPECDPVYKATIIPRGGALGMVVSLPEMDRLNWHKDECEQKLAMTMAGKAAEIIKYGPGHVSNG
PAGDIQQASQLARAMVLRWGMSDKVGNIDYAEAHEGYSGNTAGFSVSANTKELIEEEVRRFIEEAYQRAY
QILEENKDEWERLAQGLLEYETLTGEEIKRVMNGEPPQADDDADDDADTGATSVTAIPKAKSKKTPPEGD
MEPEPSS
>gi|99082202|ref|YP_614356.1| tRNA(Ile)-lysidine synthetase-like [Ruegeria sp. TM1040]
MLLTPTEEALTSAIRARIGPLPEKLGVAVSGGSDSVALMHVLATMARAEDTALAVATVDHGLRPESRREA
EFVAQQAHDLGLSHQTLTWQHPADSGNLQAEARAARYRLLGDWARTQGLGAVAVGHTADDQAETVLMRLR
RASGVAGLCGMPTCHHRDGIDVLRPMLDLRRSDLRAYLTARDVAWIEDPSNLDMKFERVRIRDALNALEP
LGLTVDALTAVADNMRMANRALDSATRTAAASIGQIRLGMVVLDCAGFNRLETEIARRLLVSALLHTNGA
AYPPRRAPVLDALKALKEGRGATLQGCHILVRGGAIWVGREYASVQHSACALLPGEGGVATMDATWDAAW
HIKAPAGWSRRVEIRALGAEGLAEIPDWRSHDAPRALLKSLPGVWCDGQLIAAPLLQERSGWTIAAIRQP
ETWALSALSH
>gi|99082203|ref|YP_614357.1| tetratricopeptide TPR_2 [Ruegeria sp. TM1040]
MSGLRQILLASALAVASALPTMAQEREQTLADIRQELTVLHVEVQRLNRELSTTGAPSASLAGSSVLDRV
TAIETELQKLTAKTEQLQFRIQSIVKDGTNRIGDLEFRLVELEGGDLSTLGETTTLGGDIEGETELGQTT
VPGTDGESTVVGGGELAVGEEADYKLAMSDLEAENYQAAADRFATFKEAYPGSPLTAQVDFGRGKALDGL
GDTREAARAYLAAFTGDTAGAIAPEALFELGAALGRLGQLDQACITLAEVAVRFPNDPAVTAAEAERSKL
ACS
>gi|99082204|ref|YP_614358.1| OmpA/MotB [Ruegeria sp. TM1040]
MSGIKTAILLVAGLALSACSDTRWDDTSAGNGGSGIGVDGGLGDPSSPAYFREAVGDRVLFLVDQSSISP
EAQVILDGQARWLQANPAYVVTIEGHADERGTREYNLALGASRANSARDYLISKGVAASRIQTVSFGKER
PIEICSEQSCYEKNRRAVTVLAGGALS
>gi|99082205|ref|YP_614359.1| translocation protein TolB [Ruegeria sp. TM1040]
MRNAIATVLLGLAMLLPVGAVQAQDGPLRIEITDGVIEPLPFAVPDFIADTPAAAQYATDIARVIAQDLV
GSGLFREIPKVAYISPYTDFDAEVNFTDWKAINAQALIAGAVSLSGDRITVRFRGYDVFAGQELGAGLQL
SGTTDGWRRIAHKVADTIYSRLTGEGGYFDSRVVFVSETGPKNDRKKRLAIMDYDGANVQYLTNSDAIVL
APRFSPTGDRVLYTSYESGFPQIHVLDVGRVQRRVLSAGNGSMSFAPRFAPNGQTIVYSQSQGGNTDLFS
MDINSGNPQRLTSAPSIETAPSFSPDGSQIVFESDRSGTSQLYVMSASGGEAKRISFGQGRYGTPVWSPR
GDYIAFTKQNAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGQARLYSVDISGR
NLKPVKTPDGASDPSWSPLQN
>gi|99082206|ref|YP_614360.1| TonB domain-containing protein [Ruegeria sp. TM1040]
MQTGTKISLAGHGLLITWALAGGWLNPEPLPFQSQDVSIISAEEFARLSEQYAAPEVSDAPEAPQEPAIT
ETTPSIPERPSQTPETPATPAPIETPVADTAAEPPAPEPDPEVPSRVPDAPELPEIVTDLPQTAEPQTAQ
QTDRVAPEPVRAPEPDTQIGDVVQEEVAPDAEAEANQPVQEATAPEAASDRIVTEAEADDAEPTAPLASV
RPRARPARPAPEPEPDPEPQTQTAARDEEPAPDAEQNPEVERSAVNDALAEALSGAGEVEAPEPSGPPMT
RGEKDALRIAVSQCWNLGSLSSEALLTEVVVGVTLSREGVPDIGSIRLLSSTGGSDSSAKQAYEAARRAI
IRCGSRGFDLPADKYAQWRDIEMTFNPEGMRIR
>gi|99082207|ref|YP_614361.1| biopolymer transport protein ExbD/TolR [Ruegeria sp. TM1040]
MGAGVQTKDAGGGRRRGRRRSRARPMAEINITPFVDVMLVLLIIFMVAAPLMTVGVPVELPKTAAGALAG
DDEEPLTVTMTAAGDIQIQTTPVARDQLVARLQAIAAERDSDRVYLRADGAIAYSDVMQVMGALNAGGFA
NVGLVTDQGGPALDGRSAAPAE
>gi|99082208|ref|YP_614362.1| MotA/TolQ/ExbB proton channel [Ruegeria sp. TM1040]
MEAETLALAQEIDFSMWGLFARATLTVKLVMIMLIVASIWSWSIIIQKVITYRTARREAQVFERAFWSGN
PLDELFEEIGAEPSGRSERIFAAGMIEWRRSHRTDGALIPGAQARIDRSMDVAISKESEGLQSGLQVLAT
IGSTTPFIGLFGTVWGIMNAFIEIAEQQNTNLAVVAPGIAEALLATGLGLLAAIPAVIFYNKLSADSDRI
IGGYEAFADEFATIFSRQLDS
>gi|99082209|ref|YP_614363.1| 4-hydroxybenzoyl-CoA thioesterase [Ruegeria sp. TM1040]
MSHQFPVTVYYEDTDMGGVVYHANYLRFIERARSDYVRRLGVDQNEMRDKGIVWVVTRIEADYLAPARFE
DELIVETQPEKMTSARLMMSQVVRRAGQELFRAKVTAVCMDMYSGKPVRLPAEVRASL
>gi|99082210|ref|YP_614364.1| hypothetical protein TM1040_2370 [Ruegeria sp. TM1040]
MPALMLPEEIEALFTREDGSYAFARWGRPIAPIVFGVADETLAIVKGAVEAVVTLAGHQMAETDPELGTN
LMFFFFRDWEELLEVPDLDRMIPGLAPLVNRLSTEEASQYRAFRFDDEGAIKAAFVFLRMKGEMAQVPAE
TLALTQAVQVMLLWSERAFSEVSPLAVLPENGNTILRPEIAGVIAAAYDRMMPVAAQDASHALRLFARLQ
GPAPDQQEHTT
>gi|99082211|ref|YP_614365.1| Holliday junction DNA helicase RuvB [Ruegeria sp. TM1040]
MIDADPTLRPEPLPEDNDRALRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFHGPPGLGKTTLA
QIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG
PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTIDELFEIVSRNARKLGAPADDAGAREI
ARRARGTPRIAGRLLRRVVDFAVVEGDGTITRELADGALTRLGVDQLGLDGADRRYLRLVAENYGGGPVG
IETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAQKAWTHLGIAPPKSQSDLFG
>gi|99082212|ref|YP_614366.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040]
MIGKLTGRLDYKTPDHVMIDVRGVGYIVYCSDRTLASLPAVGEAVQLYTELLVREDLMQLFGFTSLVEKE
WHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKTAQRIVLDLKDKAPSVMAMGG
TVTEALEGPELDAVVEPAAEAPAKPARKAAPKAPTGAAAASAGALSALGNLGYGPSDAAGAVAEAAANNP
DAGEAELIRAALRLLAPKG
>gi|99082213|ref|YP_614367.1| Holliday junction resolvase [Ruegeria sp. TM1040]
MCSRFVLVLASKQTINNQRSGGGMRILGIDPGLRTLGWGVIESNGARLSHVANGLCHSDGDDLGERLLSL
HNQVTEIIDAYRPDQAAIEQTFVNKDGAGTLKLGQARGVALLTLAKAGLPTGEYAPNRVKKTVVGVGHAE
KEQVLHMVKLQLPGCAPRGADAADALAIAICHAYYGGSNQRQLKEVGA
>gi|99082214|ref|YP_614368.1| hypothetical protein TM1040_2374 [Ruegeria sp. TM1040]
MAAIDTTRTAQGTSGLIGRIGAFLYTTSAKLMAWNDARVTRKSLSALSDRELADIGLCRGDIDQIDAHSP
LV
>gi|99082215|ref|YP_614369.1| hypothetical protein TM1040_2375 [Ruegeria sp. TM1040]
MRSDGLIVVEPQKVVRSRISGKVFILFLVVGLMFKGFLVAALGYSSYDARVAQLAQGSFVERGGAFLMQR
DPISTRIAEELRPILR
>gi|99082216|ref|YP_614370.1| 50S ribosomal protein L11P methyltransferase [Ruegeria sp. TM1040]
MPTFTALTTLSEKAQAEALGEAMERLTPEPTGIGVFEVEDGSGLWEVGGYFTEAPDEAGLALLAAMHDAK
PFAVSELPETDWVAHVRRELAPVEAGRFFVYGSHDADKVPADKIPLLIEAAMAFGTGHHGTTLGCLKALD
HLLCEGFEGKKVADIGCGTAVLAMAAARVWPTAQILASDIDEVAVDVAEANMDANGMKGAVACLEAAGFD
APALKAAAPYDLIFANILKGPLVALAPDMAAHLRAGGYAILSGILNEQADDVIAVYAQNGINLVKRTEIG
EWTTLILSK
>gi|99082217|ref|YP_614371.1| major facilitator transporter [Ruegeria sp. TM1040]
MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLHTMREIPGFLA
FLVIFLIIFIREQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGFHYYETVAQSLQLQWLSKERA
PQMLGWLVATGSAATLVVYGAIVVLWEPMNLSYNVVYLAAGGFTVLIALYCLFAVPQFDGPTPQNKKMVL
RRRYWLYYALQFMAGARRQIFVVFAGFMMVERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRT
LIFEYAGLATVFALYGGIYWFGWGVMLAAALYVVDHILFALALALKTYFQKIADPADIAPTAAVAFTINH
IAAVFLPVMLGLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETIFAQFAAPTPAE
>gi|99082218|ref|YP_614372.1| primosome assembly protein PriA [Ruegeria sp. TM1040]
MSKAGDSPEFFAQGERVGVLTAQPLDRLLDYRAPEGGCFLGAFVEVPLGPRKVIGVVWGPGAGDFDAAKL
RSVIRVLDLAPMRAEMRGFLERAGQYTLTPMSMMLRLATRAPGLADPPSMRKILRRGDREPDRITDARAK
VLDVMQEYEGGAFTPSELSELAGVTTSVIKGLIKQGAIREEEAPRDLPFPPLDPDLPGKTLSEDQAAAAA
ALEAGVESGRYGTTLLKGVTGSGKTEVYLEAVAACLRKGRQALVLLPEIALTAEFLKRVEARFGAVPAEW
HSGVTMTERRRVWRMVGQGAAQLVIGARSSLYLPFRDLGLIIVDEEHDTSYKQEEGVLYNARDLAVWRAS
LCQAQVVLASATPSLETWANAEAGKYQRLDLTSRFGDSVLPEMRAIDMRNEELLPSTWISPTLKQAMKLR
LERGEQSLLFLNRRGFAPVTICRACGAQVACDNCDARMVEHRFMKRLMCHQCGETKPVPTECPSCKVEGK
MAPVGPGIERLGEEAAALFPEARIAVLSSDLFGSARALKQRIEDIAAGEADIILGTQLVAKGHNFPLLTL
VGVIDADLGLQGSDLRAAERTFQLMRQVAGRAGRAERRGEALMQSFQPEHPVIRAILSGDEESFWRAEAE
QRQAAGVPPYGRMAGVILSGTDLAQVFDLGGALARNDGPLRQVGAQLFGPAPAPIARVRGRHRVRLLVKA
DKGAPLQDAITRWIAPFKLKGDLRLNVDIDPQSFL
>gi|99082219|ref|YP_614373.1| putative translaldolase [Ruegeria sp. TM1040]
MKFFVDTAEIDAIAELNDLGMVDGVTTNPSLIKKSGRDIIEVTKEICDLVDGPVSAEVTATDAETMIAEG
RKLLEIADNITVKVPLTWDGLKACKTLTDDGHKVNVTLCFSANQALLAAKAGATFISPFIGRLDDVNLDG
MDLIEDIRTVYDNYGFETEILAASIRTVNHILDSARIGADVITAPPAVIKSMVNHPLTDKGLDAFLADIK
AAGIKIL
>gi|99082220|ref|YP_614374.1| hypothetical protein TM1040_2380 [Ruegeria sp. TM1040]
MSSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRLDRLEDTHRSV
IAAAYENLAGTNQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALILETTQEEAGAAVERVGDILK
FTESGFVQSYLAQERAYGGDRCVTLRQIQAGPARLYGERGADLRSEACLRLDLGAGRLPGLLVFGAEDPH
QFTPQHGTDLLTFFGGVFERCMRRWLS
>gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040]
MSAGDPTLISPAARDALQRWLDGLGALEGAADNTLAAYRGDVVEFLSFMSLHFGAPQGLGALRQITTADM
RAWMASARSSGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRAPKFQKKLPRPLDQDAARAMIDTV
ELQSQKDWVSARDVAVVTLLYGCGLRISEALGLLGKDAPLPATLRIKGKGGKERVVPVLPAAQQAVERYL
ALCPHPKEAHLPLFRGVRGGALHARMIQGVMAGARRQLGLPATATPHALRHSFATHLLEAGGDLRAIQEL
LGHASLSTTQAYTAVDTAHLMEVYARAHPKA
>gi|99082222|ref|YP_614376.1| CDP-diacylglycerol-choline O-phosphatidyltransferase [Ruegeria sp. TM1040]
MTIELRALSVHLLTATGAVFAMLAMLAAVDAEWDLMYLWLVVAFAVDGVDGPLARHFDVKQNAPQFDGVL
LDLIIDYLTYVFIPAFALFKSDLMSGWTGWAAIIVITFTSAMYFADTRMKTKDNSFSGFPGCWNMLVLVI
FALEPNHWVSLGLVLVLSATQFLPLKFIHPVRTERWRSVSLPVALVWTALAGWTAWVEFAPGQLVHWALL
VTSVYLLFVGIAQQIMPSRD
>gi|99082223|ref|YP_614377.1| hypothetical protein TM1040_2383 [Ruegeria sp. TM1040]
MSMREDGPSINQRQLSAVDGYKNFSNSMASRQLARAMAELRESAAGANYPREVAPSDKPAPSPLPAGDRD
IAQQAFLAHCTQHQMSGREASRLYAGAKAFI
>gi|99082224|ref|YP_614378.1| tRNA pseudouridine synthase A [Ruegeria sp. TM1040]
MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEAALARIEPGEHTIAAAGRTDTGVHGLGQVAHCDLEKNW
DPFRLSEALNYHLKPAPVAIVDAALVDDEWHARFSAVERQYLFRILMRRAPATHDEGQVWQIKHDLDVAA
MQAGANMLLGNHDFTTFRSSICQAASPVKTLDELRVERVQGLSGPEVHFHVRARSFLHNQVRSFVGTLER
VGTGAWSPEDVKHALEAKDRAACGPVCPGHGLYLARVGYPDPVFSSDRV
>gi|99082225|ref|YP_614379.1| protein of unknown function DUF463, YcjX-like protein [Ruegeria sp. TM1040]
MADGVLRGAETLGDALTSPFAAPSLRLGVTGLARAGKTVFITSLVANLIDRGRMSQLSAHRDGRIEAAYL
QPQPDDTVPRFDFENHLAALTGPSPHWPESTRAVSELRLSLRMRPGGMFGGLTGPRILHLDIIDYPGEWL
LDLSLMDKDYLSWSEDVLRRIKTRAEAQAFLRAAEAASPAESHDEPLAQGLAQAFADYLQEARNAGYYDC
TPGRFLLPGDLAGSPVLTFAPLPPSEAPRGSLAREMARRFEAYKSQVVRPFFRDHFSRIDRQVVLVDALG
ALHSGPPAMEDLRRAMTDILSTFRPGSNRFLSQLLRGKRVEKILFAATKADHLHHQQHPQLTAIIEALTH
EARERAQFAGAETAALSLAALRATTEELRMHEGVELPCVRGILADSGKPAALYPGRLPEDPRHLLTPARQ
GADTWLDGSYASMRFAPQPLTLKPGDGPPHIRLDRAAEFLIGDRL
>gi|99082226|ref|YP_614380.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MSSVLRPATPLDASKLGEILYRFEHETPWMPKEHSLAETIAFCDRMIAQGWITVAQDPASGQILGFCAKD
GPEICALYLLPEHTGLGVGKQLLDQAKETSPELQLWTFEANHAAQRFYRREGFVETQRTNGHRNSEGLPD
IEYRWQVKEMEHAT
>gi|99082227|ref|YP_614381.1| hypothetical protein TM1040_2387 [Ruegeria sp. TM1040]
MSRDPIVFDVEDDDSAAPHVSDAPPVPDLDTPTAVQASATLLGARARSGWGGWIWGGVAGLITTLATVAA
WDYATSLLDRMPVLGLIFSLAFAGLVLLALLFCAKELAAVGRVRRVEGLRQACSEARGGTLAEAQNQVGA
LVRFYNGRADLEWGLKNLKERKSEILDPDALIDLAEAELMRPLDARAVAEIEAAARQVAGVTALVPLALA
DVLTALVASLRMIRRIAEIYGGRSGLFSSWRLTRAVLSHLVATGAVAIGDDLLEPILGASVLSKLSRRFG
EGLVNGALTARVGLAALEVCRPMAFESEDKPRLGKVLQRALSGFAR
>gi|99082228|ref|YP_614382.1| hypothetical protein TM1040_2388 [Ruegeria sp. TM1040]
MQDVQPLARFQISADDIRRVVSVFYGEVRRHPVLAPVFNAHVEDWPQHEEKIANFWRNAILRERVYDGFP
MREHLSRPDVRAEHFPVWLGLFHAVLEREVTAEQALQWGHLADRIGEGFRTGIESIRQPKDEPPKLI
>gi|99082229|ref|YP_614383.1| isoleucyl-tRNA synthetase [Ruegeria sp. TM1040]
MCADKTEVTPEYKNTLNLPKTDFPMRAGLPKREPAWLERWEKIGVYDRLREKEGRQPFVLHDGPPYANGH
LHIGHALNKTIKDMIVRSHQMMGFDSRYVPGWDCHGLPIEWKIEEQYRKKGKNKDAVPVIEFRQECRKFA
EGWIDIQREEFKRLGITGNWPNPYITMDYHAEAVIAEEFMKFLMNGTLYQGSKPVMWSPVEKTALAEAEV
EYHDKESFTIWVKFKVVEPADHKLAGAQVVIWTTTPWTIPSNKAVVYGADIAYGLYEVTGTPDECWATVG
DKYLLADNLAADVFKRARLSEDQYKRVADVSAEDLAGIGLAHPLAGSEGSEGEWDGIRDFRAAPFVTDTE
GTGFVHCAPSHGMEEFELYRDLGMLEQMITYNVMDDGGFRADLPFFGGKYILNRKGGEGDANKAIIDKLV
EVGGLLARGKIKHSYPHSWRSKAPIIYRNTPQWFAGVDRKLDDGMGDYGDTIRERALRSIDELVKWTPQT
GRNRLYSMIENRPDWVLSRQRAWGVPLTCFTKKGALPTDADYLLRNSEVNARIIAAFEENGADVWYEDGF
KEKVLEGIVAPDDYEQVFDVLDVWFDSGSTHAFVLRDREDGTEDGIADVYMEGTDQHRGWFHSSLLQASA
TKGRAPYRNVVTHGFTLDEKGMKMSKSLGNTIVPEEIVKQYGADILRLWVAQTDYTADQRIGAEILKGTA
DSYRRLRNTMRYMLGSLSDFNEDQRVEPADMPELEQWVLHRLAELDRTVKAGYKAFDFNGVWQAIFNFAT
VDLSAFYFDIRKDALYCDGDTLNARAARTVLDILFHRLTTWLAPILVFTMEEVWLERFPGEESSVHLVDM
PETPRDWINEPLAAKWAKVRQARRVVTAALEVQRTDKVIGASLEAAPVVHVREADVLEALKSVNFADVCI
TSDVQLTNDPSPAEAYRLPEVDGVSVVFEKAEGEKCQRCWKILPDVGSHAHPGTCGRCNSALGG
>gi|99082230|ref|YP_614384.1| hypothetical protein TM1040_2390 [Ruegeria sp. TM1040]
MITAMRPYAGVPSNNVTPVVFTVTDTVALSSSDSGATGAEFANSRLGNFLSDDPAPRDRDLDSLFSSDTL
PAYEKSSSSSASASSIETEGLLSPLPQSFDPISLPPLESALSSQMQQVAQDNVFRGISSGSFAQEMYTNT
QDVLSRVAA
>gi|99082231|ref|YP_614385.1| glycine dehydrogenase [Ruegeria sp. TM1040]
MPFEPTDYLPYDFANRRHIGPSPEEMAEMLKVVGADSLDALIDETVPQSIRQKAALDFGRPMSERELLFH
MREVAGKNKVMTSLIGQGYHGTVTPPAIQRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMISDLTGL
EIANASLLDEATACAEAMTMAERVSKSKAKAFFVDRDCHPQNIAVVKTRAEPLGIEVIVGNPDKMDPEAV
FGALFQYPGTYGHVRDFTDHIAKLHEHKGIAVVSADPMSLTLLKEPGAMGADIAVGSTQRFGVPVGAGGP
HAAYMATKDAYKRNMPGRIVGVSVDAHGNKAYRLSLQTREQHIRREKATSNVCTAQALLAVMASMYAVFH
GPKGLKAIAQRIHRKAVRLAKGLEEAGFKVDPQAFFDTITVDVGPLQAAVMKSAVDEGINLRRVGETRVG
ISVDETTRPETIEAVWRAFGIVRADDDFTPDYRVPANMHRKSDYLTHPIFHMNRAETEMMRYMRRLADRD
LALDRAMIPLGSCTMKLNAAAEMMPLSWPEFSTIHPFAPADQQAGYGEMVEDLSKKLCDITGYDAISMQP
NSGAQGEYAGLLTIAAYHKARGEGHRNICLIPMSAHGTNPASAQMVGWKVVVVKSDERGDIDLEDFRAKA
EKHADNLAGCMITYPSTHGVFEETVHEVCKITHDAGGQVYIDGANMNAMVGLSRPGDLGGDVSHLNLHKT
FAIPHGGGGPGMGPIGVKAHLVEHLPGHPETGGSEGPVSAAPLGSASILTISWAYCLMMGGAGLTQATKV
AILSANYLAKRLEGAFDVLYKGPTGRVAHECILDTRPFADSADVTVDDVAKRLMDSGFHAPTMSWPVAGT
LMVEPTESETKAELDRFVDAMLSIRDEIKAVESGEMPRENNALKNAPHTMEDLVKDWDRPYSREQGCFPP
GAFRVDKYWPPVNRVDNVYGDRHLICTCPPLEDYAEAAE
>gi|99082232|ref|YP_614386.1| glycine cleavage system H protein [Ruegeria sp. TM1040]
MKYTEEHEWLQVEGDVVTVGITSHAAEQLGDVVFVELPEVGSEVSKDDEIVVIESVKAASDILAPLDGEV
VEVNEAIVDAPSKVNEDPEGEAWFFKLKVSDMSPMDDYMDEAGYKDFIG
>gi|99082233|ref|YP_614387.1| glycine cleavage system T protein [Ruegeria sp. TM1040]
MSDLKTTPLTELHESLGAKMVPFAGYSMPVQYPLGIMKEHTHTREKAGLFDVSHMGQVILRGESYEALAA
AFEKLVPMDVLGLSEGRQRYGLFTNDTGGIEDDLMFANRGDHLFVVVNAACKDADIARMKAALEPEVTVE
PVTDRALLALQGPAAEAALEALVPGVAAMKFMDVATFAYEGGELWISRSGYTGEDGYEISVAEAGAEAFA
KALLAHADVEAIGLGARDSLRLEGGLCLYGHDIDTETRPFEAALGWAIQKVRRPGGDRAGGFPGADAIFA
DLGGKAPRKRVGLKPEGRAPMREGVVLYASAEGGDPIGTITSGGFGPTVGGPVAMGYVTAEHAALDTQVF
GELRGKRVPVTVAKLPFVAANFKR
>gi|99082234|ref|YP_614388.1| glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [Ruegeria sp. TM1040]
MKIAINGFGRIGRTILRQILTSPRGSGIEVVCINDITDAEMCAYLFQYDSTFGPYPGEVSLEAGTLCVDG
RRIALHQEANVTNLDLAGVDVLMECTGIARTTDLAQRGLTAGARKVLISGPSPAAEVTVVYGVNDADLAG
AQIVSNASCTTNAVAGLVQLVDAVAGIETGHMTTIHCYTNSQPMVDTPRGDFARSRGGAQSMVPTTTSAM
HLIDVVLPRLKGRISGAAVRVPTASVSAVDLVATLQSEWDQSDLLMALKASANGSPILGWTEQPLVSSDL
RARPESLIIAAPETRMVGTQQLRIFGWYDNEWGFSARMLDVARAMQPQV
>gi|99082235|ref|YP_614389.1| surface antigen (D15) [Ruegeria sp. TM1040]
MFRFCQLRRTAFPLCRTLRPLSLALSLSVALSASPLSALDANLAAPKAPDDLAERLRGASAALGLSQNSE
TQEIIAASLSDYRTLVQVLYDAGYFAPVVNIRLDGREAAAINLLNPPKRVQNIAITVDPGPAFTFGRTVV
TPLPAGGTASLPEGFATGKPANTGAIQEAANAGLGAWDRAGHPKVELAGQSITANAVKRRLDAELRIAPG
PRLRLGNLRITGESDVRPQAIQRIAGFAKGQTYHPDLVSKAANRLRRTGAFSTVALRQADVPNPDGSLDF
IAEVEDLPKRRFTFGVEISSSQAMELSTSWMHRNLFGGAERLKIDFSVSGIGSSDINSSITARLDRPAAL
GTDRNLFYLASIEQLREEHYTARSALAAVGVRRIVSDTTFVEGALGLRYINADDAYGSNREFKYVAARLR
GEKDMRNIKTNPTAGYYLDGEIVPFVGVSGGDPGVQINIDARGYKALGNSDRLVLAGRVQLGSIIGPDPS
DVSPTFLYFSGGAGSVRGQEFQSLGVDTPGGTAGGRAYLALSGELRGRITNAISLVGFYDVGFVDKDSFI
SGDSEYHAGAGIGVRYDVTGVGPIRLDLAMPVAGDTEDGLQFYIGIGQAF
>gi|99082236|ref|YP_614390.1| hypothetical protein TM1040_2396 [Ruegeria sp. TM1040]
MKQNLQSLIFTCGLATCPVLTPLPTLAQDASESGGLLVSFLEDTLSGDSRTVSVEGLEGAFSSQAKIAKL
TVSDAEGIWLTVEGAELDWNRLALVRGRFSVNHLKADRITVARSPEPVPADPELPMPEATPFRLPELPVS
IEIGDIAAGEIRLGEALTGQAASLSVDGALTLADGALETDLNVARLDRRGDALHLAASFSNTTEQLALDI
ALDEAPGGLLSTAMDLPGRPDLRLAIKGEGSLTDFTADIGFASNSHDRITGTVSLRGLGDVDSDTDAGLA
FSADIGGDIDPLLPPAYRPFFGPGMRANVKGRSLSSGGVELDNLVLRTRALQLTGALRLEAGMLQTANIK
AAITAPEGQAAVILPVSGADTTVAAVTMDLKKPEGENWTINAELDSLRTADLSIKRAVVNAAGALDQDAG
FNLDGALDARLSGFVLSDPALAAATGSKLSLSAQLTTKDGADFLVRDLELQGDSYSARGELRFDRLEGDL
RIATTLSLLAENLSRYSVLAGLDLSGSAEADVSGHFQPLSGAFGVDLALLGRDLGTAIPNVDPLLVGESR
LKLVAARDTAGIRIDQFHLQTAEVSATGQGTLDSGEGALRLDATLARLDRFVTDLPGPLTLSANFDRSGN
RLDGTVALRGPQKTAMDLDGSFTLDGAADFGFEAFVGAPEAFVPELAGAPVIATGTATRRAAQWTGDMTL
TATGGTRARIKGGFHEADGAIDLDLSALLARVEQFAPAITGQATARLIASRRDGQWQAKGDVTAPGDTTA
TFDAGFVETSGDLDLKLKAEVAEVRAYAPTLPGRASADISATRRAGAWAAGGKVTGPAGTAADLDVELSE
TDGTARVRFDALVRELQQIVPGLDGALSAKGEARRADGIWTVESTADGPLGMASRLAGTWDEARAIADVS
AKGTLRLEGANAFLKPNLIKGLAEFDLALRGPAQLNSVSGTITTSGAQMVLPQAAQTIEGISTRISLNSG
SAAVNLSARPRDGGRIEVNGPVSLAAPYAGDLRISLADVVLTDNLSFDTSLGGQLRFSGALAGNSRLSGR
IDIGETNFNLNTAGGAVSAAPIPPIRHVGQTGAQIATRARAGLIETGSAASKSNSNIALDVLISAPNKIF
ARGRGLNAELGGTIAVGGTTANLAPSGQVGLIRGTFDILGRRLNLDEGRVTLLGDLKPYLEFVSSANTEQ
GTATLSIAGPLDGPQIKVTSEPPRPSEEALALLLFGDNIQDISPLALARLASSALTLSGRGGGANKALRD
STGADNADIGIDNLGVGQLGLGGYLADNVYTDVNVTAEGNSELSINLDLTKSLTVAGKADSEGETGLGVY
FKRDY
>gi|99082237|ref|YP_614391.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MRTAPPSQCDTRPSGPLRVDAIVIGRNEGTRLLACLDSLAGQVQRIIYVDSGSTDGSVAQAEARGAEVVA
LDMSRPFTAARARNAGLQHLGVSGTPGLVQFIDGDCVLDTGWLAQATDFLAHHPDVAVVCGRRRERAPEA
SVYNWLCDQEWNTPVGETRACGGDALMRRDALLAVGGYRDTLIAGEEPELCVRLRHAGWRVWRLDHEMTL
HDAQMFRFSQWWNRTRRAGHAFAEGAFLHGAPPERHWVTETRRAIVWGALLPLLILLSAVVSPLLAAALA
LLYPLQFLRLSRRMRPIAAFYSVLGKCPEALGVIEFHLNRLRGSQRDLIEYK
>gi|99082238|ref|YP_614392.1| WecB/TagA/CpsF family glycosyl transferase [Ruegeria sp. TM1040]
MLKAKISNRFHERDGFALATINLDHLVKLGHDQAFLTSYQAQDFIVADGRPITWLSYLANQPVDLMPGSD
MVTPLAELAASAKAKVALVGSSEAVLQKAGAELSRRVPGLEVVYVRAPSRGFDPFGAEARGILQDLDAQD
IGLCFIALGAPKQEHFARLGRELAPRTGFASIGAGLDFIAGAQRRAPRLMRKLALEWFWRMLSNPLRLMP
RYIKCILILPGQVVHALRLRMDASAARREI
>gi|99082239|ref|YP_614393.1| hypothetical protein TM1040_2399 [Ruegeria sp. TM1040]
MPNAIANLMLLVWPVAVLVFFQRLPLQRAILLCLIGGYLILPPVAAFDLPLVPDLDKFSISSIMALVGCV
FVAKAPVPFLPSALFLRILVIVFVISAIPTVLTNSDRILFETLQDAAPIIFYHSELPGLRWRDMGSVMIG
QVIVLIPFFIARRHLSTPDAHRELLLAFCIAGLFYSIPSLIEIRFSPQMNVWIYGFFQHDFAQMIRMGGY
RPIVFLPHALWLALFMFSALIATVSLARVAESGSRARLYVAAFYLFCMLVLCKSMASLAYGLAFTPVVAL
ASYRLQVKLALAIALIGCIYPILRNAHVIPLETVLTKIEEFSPDRAQSLGYRFENEEVLLERAAEKPVFG
WGAWGRNLIRDENDGRILSIPDGRWIITFGSFGWVGYLAEMGLLTSTLALLYWAMRRQETSRISPHVSCI
SLILGATMIDMLLNDTLVPVTWMCAGAILGYAERELYPRSFAPRQALFGGRQALDMPATKGQSHPVMD
>gi|99082240|ref|YP_614394.1| beta-ketoacyl synthase [Ruegeria sp. TM1040]
MDKKTPNDAFSPDDIAVVGMSVALPGAASVQEYWTNLRDGIESIQSVDEDSLLSAGERAETLRDPNYVPS
CAPLDGFDEFDAEFFGFSPKEAAILDPQHRKFLEVAWGAMEDAGHTPESLKGQVGVYAGCGMGSYFYFNI
CSNPDLVDDVGMFLLRHTGNDKDFLTTRVSHVFDLKGPSVNVQTACSTSLVAIHYAAEALRNGECDMALA
GGVTIELPQGRGYLYKENEILSPDGHCHAFDHRAQGTVFGSGAGAVALRRLGDAVADGDHIWAVIKGSAI
NNDGAAKAGYLAPSVDGQSAAVRKALTAARVNPETIDYVECHGTGTYIGDPIEVAALTEAYRDGTDAKGY
CRIGSVKTNIGHLDTAAGVAGFVKTALALEHKTLPPSLGFEKPNPTIDFETSPFQVNDALRPWMSHKGPR
RAAVNALGVGGTNAHAILEEAPVRAASEESDFPFQVLCLSGQTKAALEANTQNLIAYLRANPEVELADVA
FTLKEGRRGFAKRRVVVAETATEAADKLEAANPREVFTHDHLGPQPETVFMFPGGGAQFAGMARDLYETE
PVFADWMDQGLDHLEKSLDFDIRALWLPEPGEEASANAALLKPSVQLPLIMIVEYALAQLWISWGVRPAA
MVGHSMGENTAACLAGVMRFEDCIDLVQLRGRLFDTIEPGGMLSISLPLAEVETLVGEDLDIASVNAPEL
TAVSGPNDRLDALSEQLRARGVEFQRIPIDIAAHSRMLEPILGAYGDFLRRLDLQPPTLPVMSNRTGQPL
TAEQAMSADYWVEQLRNTVRFADCIETLGATKGRVYLEVGPGKALSALAQMSPEVAPGQVLSSLRHPDQD
IADDAYFFGVIGRLWACGVEADWPQVWGDAQRNRLSLPTYAFQRNRYFIEPGKSVQQPEAALPEHHKDMA
DWGYRPAWRPRLADCALDIENDLALEPHSWLIFEDTTGQGAACAEALLAAGHRVARVRAGDTYAQLAPDL
YQLAPEEGRFGTEALLADLTEAGYFPDRIAHFWLVTETEEYRPGSSFFDRNVEMGLMSLTALGQALAQAD
LPHSVHLSVMTTGAMQVHGESLPYPEKAMISGPAGIIPREIPGVTVATCDIELPQAPTGWNALLGGSAPA
CITTRLLEELLAMPGNHSAAWRGEKRFELDYRPLPLSEPDARDLPLKKGGHYLLTGGYGGIGLTIAEHLM
RTYEARVTLLSRETLPPRADWGRELRRRSPSDRIAQRIRAVQKLEATGRGEVLTLSADVCNLQEMRDAAE
AASAAFGPISGLFHGAGFIADAPLLAKTDRQIAEVLAPKVSGLRVLDQVFPDGTIDLMVLFSSSSTVTRP
AGQVDYVAANEFLNAWAKSRQGAQTHVVALDWGIWADTGMAADAMAARRGSAAPSEPQPSEAALWQTQGF
DRNGTPIFKSRFEADKHWLLDEHRTKDGRALIPGTGNVELIAEGLTALDVSPPFEIRDLYFLQPFVVEDG
SPREAVMHLAPTQGGYDVQIHAETSEGYARTAEAEVVSRALDAETPQLSLEAIAARCTPKAADPASERLT
SPQEANLRFGPRWHVLQSMALGRDEGLAKLSLPDLADQDGTLLHPGLLDLATGWAIELAPGYEPSTLWVP
VSYGSIRVHAPLVKTVFSHVRLAQEGGERGSVLFDITLCDETGNVLVEISHFRMQQLSGGFDLLPARTDT
TAAALGLTSEAEIQPLSPDERRLLANLENGIRSEEGGAALERALAAKQPQVIVSSLDLSALRAQAENGAE
ITSESEGQSFERPDLDTDYVAPSTETEETLAGHFASLLGLSRVGVEDSFFDLGGHSLIAVRLFAQIKRSF
GVEFAMSVLFDAPTVGALAQRIDKEAGPPAVTVTSTSDTETTTPQSYSHLVRLAPGENGEAAPMFIVAGM
FGNVLNLRHLAQILGEDRPVYGLQARGLIGADEPHERIEDAARDYIAEMRLVQPEGPYLIGGFSGGGITA
YEIAQQLKASGDAVDALVLLDTPLPVRPDLKPIDKTLIKIAEIRAKGPGFVTEWARNRIAWEIRKRQSRP
SEGAENAGFNNRKIELAFLRAVASYTVQPWNGPVTLYRPVLDQHWKVSGGQWVSREREYVYPDNDWKQFA
PALDVCEVPGDHDGMVLAPNVSVLGKKIRDLLAATNSRATRPHDSSKAAE
>gi|99082241|ref|YP_614395.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MARNTILTIILNFRTPAMTLKAAEAALEEMEDLPGEVLIIDNGSGDGSFEALQAGAAARGWLDSGRLRIE
ASPVNGGFGAGMNIGFRALLSDGTRPDFFYLLNSDAFPEQDCISTLRDFLLKTSEAGLAGSYVHGEDGTP
HCTLFRFPTIASEFEGAARTGFISRLLKHAIVPLDIPSAVQQVDWTAGASMMIRRNVIEAVGGFDETFFL
YFEETELCHRAARAGWRTYYVPHSTITHVGSASTGMKTWARTPEFWLDSRLHYFTQSHGALYAVAATCAR
LLGGSIYGLRRLISDKPRADAPHFYGDLTRHHVKRALRPRPAPRPARPFAPDPVLEDNKS
>gi|99082242|ref|YP_614396.1| amino acid adenylation [Ruegeria sp. TM1040]
MTISTVVIGNESLLIGCCEALLARGHDIRAVVSTDAEITSWAASKGLNTHSKPLEIDIEFDWLLSIANLQ
VLPEAVISKARLGAVNFHDGPLPDRAGLNTPNWAILEGAEEHGITWHLIEGGVDEGDILAQRRFAIAPDE
TAFSLNSKCYGAALDSFGEVLEQLESGALERTPQDLSHRRYHARKDRPDAAGFLRFDRNRDTLLCLVRGL
DMGGYWNPLTTAKIRLPGQVAAVGAAQATEGEGIPGEVLAVSANALTVACADGAIELRDLKTLSGGALQP
SALLEVGDVLPTLSDQEVEALNAAAQTCQKAEPYWRRSLAEMLPLPVPLQGAELDVEATADIQLPTDCAP
QTLMAAMLAWLLQSLGETAGSIALSLPDLQTSDDLGVLSNWVPLSAEIDEKIKTVEARAAEVLDRLDNMG
GFATDLILRAPEVTIETPPEVALCLGTNLAPAQAKLALIQSDSRLQLRSCQLSPEALSMLAARLQCLLNT
LPEDGAATLSTLPMLPDSERTRLIETWNDTGCDYPTDQTIHAAFEAQVARTPDAIAVVFEDQQLTYRALN
QRADALARHLHDLGAKPGSHVGVYLRRSMDLVIATLGILKAGAAYVPLDPTYPADRIAHYITDSQAAVIV
THESLAAELPESDARQLHLDALDLTTEADPIRAGAAEDLAYLIYTSGSTGLPKGVMVRHRNVANFFTAMD
ARIPHQPGDAWLAVTSLSFDISVLELFWTLARGFKLVLSSDESRLQLANGPIGLSDRKMDFNLYYWGNDD
GAGEKKYELLLEGAKFADAHGFNAVWTPERHFHAFGGPYPNPSVTGAAVAAVTRNIGVRAGSCVAPLHHP
ARIAEEWAVIDNLTGGRAGIGFASGWQPDDFILRPENTPPANKPALFEALQTVRKLWRGEEVAFPRADGG
QHSVVTQPRPVSEELAVWVTTAGNPETWREAGRVGANVLTHLLGQSIDEVGDKIALYHAALREAGYDPAD
FTVTLMLHTYLAETREAAREVAREPMKDYLRSAAGLIKQYAWAFPAFKRPKGVDNPFEMDLGSLSSEELE
AILDFAFERYFEESGLFGTVDDAVARVEDLKRIGVDEVACLIDYGIAPHVVLEGLKPLAEVLRRSNRVQE
LANDDFSLAAQIVRHGVTHMQCTPSMARMIASDADASPALGRLRHLLVGGEALPGDLVAALREQTRATLH
NMYGPTETTIWSTVETLERAPTGIAPIGTPVANNSVYVLDAKGQLAPVGAAGELYIGGAGVTAGYWRRDA
LTAERFPDDPFLSGQKMYRTGDLVRWREDGKLDFLGRTDHQVKIRGQRIELGEIETALTAVEGVTAAVVI
PRKVGSDERLVGYVTASGVFSETEAKAQLSRQLAGAMVPSHIVVLEAFPLTPNKKIDRKALPDPTPSRQE
AHVISAEPQSPVQQKISEIWKALLGVPAVGKSDNFFALGGHSLLAVQAHRDIRSALEVERLSITDIFRFP
TLDGLASHLEHLQTGDTTVAETSPAAPAGRADTMSKRRAMRANRKARSG
>gi|99082243|ref|YP_614397.1| 4'-phosphopantetheinyl transferase [Ruegeria sp. TM1040]
MIAPRPAPQDISQQRQHALRQLLSDPIAIATCDPHGDLPEPFAEESACLSPNAVEKRRREFAAGRASAHQ
AMRALDQPCAPILIGPKRAPLWPEGLTGSITHCASCAMAAVGFTRDFTGIGVDVEEDTPLSRDLWDSIAS
PAEQTWIAAQPDPGQAGKLLFSAKEAAYKAQYSRSERFFGFSGLELVFDTNKGQFTACFTSDQLPYRSGD
LLRGRFAITTGVIITAVEISKNELCP
>gi|99082244|ref|YP_614398.1| hypothetical protein TM1040_2404 [Ruegeria sp. TM1040]
MMNRLRHLPRRALLLICAALPVGALTLWSLGSRGSSPVEVPPLPAPQAPLTVYHLGHSLVGADIPHFLAQ
FAGSGHAYNVQRGSGTALRAHWEESEPILDFDKVNAAPIWRDPKEALSTTDYDAVIFTEMVELRDAIKYF
DGARYLNRWADLARKGNPNARLYLYETWHRLDDAEGWLNRIDADLEALWLDELAARDDRAASDQPLYLIP
GGQVLAAVTRAAEAGEINGFSDREALFDLLPDGTRDQIHLSPLGAYIVALTHYAVLYHRTPEGLPHRVAL
ADGTEFKALDAETARQLQSIVWRTVTHLPRTGVASAKSEAS
>gi|99082245|ref|YP_614399.1| hypothetical protein TM1040_2405 [Ruegeria sp. TM1040]
MSTEALITAVMMIGHSLIGPENPRMLQQLLQAGQENRPVVEFQIINGAPLRYNWEHADKAQGVNARTRLA
EAPVDALIVTEAIPLANHLRWSDTEGAIEKFYSVAAQSNPNVTLYVQEGWHSLLSGTGEEVPFDDGGDVA
WRSRLDNDLPHWQGVVEKVRSNTGGDIRLLPTGQALGRLADAIETGTVPGLSRINDVFSDDIHPNDIGFY
YLALVQYAVLTGTSPEGLPRVLKTEWGTPYKAPSADLALRLQEIAAGAATGSQARMTLPPDPVALPLEPG
PAILNDETSVAALPSGKPIVRKQPIAMNLAAIRDWSPQAPFLDHFKTARAWIGHLPGRWGGVTEEELRAA
GYLDPDGWPLAIPPELGSIGTVLLNDLPETANSLSGRYVVRFDGKGIVEAGGRAKNVRYGKNQVSFDFEP
GPGAVDIRIQRSDRAGTGDYVRNITVVRERDLPAYDQGALFNPDWLDRIEGFAALRFMDWMDTNNSDQIG
WEDRPRYRDYTWSTRGVPAEVLVTLANRVGADPWFTLPHMSDDTYVRNFATLVRDGLDEDLKAYVEYSNE
VWNWQFQQAQWADKQAQEAWGKDGLWLQYYGARSAEIAEIWTEVFAEGTDQVQLPDRLVRVMSTQTGWLG
LEEQILTAPLWTAEDPDRQPPYRSFDAYAVTGYFGASLGMQEQAPMVRAWLADSRERARDAGVQNGLRGA
ALAGYVEDHQFDIATAQALVELQDGLNSGSQEGALNDLLARILPYHAKVAAEHDLELIMYEGGTHVVGHG
PLVDDDALTAFFTHLNYSPEMGELYRKLLNAWPDIGGTLFGAYSDVSVPGRWGSWGNLRTLSDKNPRWDV
LEAAR
>gi|99082246|ref|YP_614400.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MTAPPQRRISILIPAHNEADYIGDCLTALYASEILGHEIEVLVLANGCTDETVARTREIPAPEGWRLRIL
ERAEGGKLAALSEGDRAATGDILVYLDADVQVETDLLAQIAEALGKGPALYASGTPCVVPAQSAITRAYA
RAWVRLPFVRIGTPGFGIFAMTRAGRARWQDWPAIISDDTFARLNFRPEERIRLPGRYHWPMVEGFRNLT
RVRRRQDRGVEEIKELFPQLLQNDDRRPSSAHSLARVALTRPLDATVYVAVALAVKTNLFASNVVWTRGR
>gi|99082247|ref|YP_614401.1| glycosyl transferase, group 1 [Ruegeria sp. TM1040]
MKIAYVLNTYPQPSQSFIRREIQALERRGITVVRLAMRATDQALVDPGDQAEAAQCHYVLAAGAARLVLA
LLACGLRAPLSGWRAFLLAMRLGRAQSKRLRHLIYLLEAAYVTRVTARVGCAHLHAHFGTNATTVALLAN
ALGAPGYSFTTHGPEEFDAPHALSLGEKVDRARFAVAISSFGRSQLSRWAAYGAWPRIKIVHCGIEPARF
SAPAPVPEGPLRLVAIGRFVEQKGLMVLIQALALAVRAVPDIHVSLVGDGEMRADLETAIKAHGLYENVT
LTGWLSEAGVRTALVESHALVLPSFAEGLPMVVMEAMASGRPVLATYVAGTPELVVPDETGWMVPAGDAQ
ALADLMVEVAALPRTQFEQMGQKARSRVLERHDIDREAEKLAQHFADAIAENAE
>gi|99082248|ref|YP_614402.1| polysaccharide biosynthesis protein [Ruegeria sp. TM1040]
MTSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLLTRILFPEAFG
LMALVTVIIIGLSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLLWLLTCALALPAASFYDAPEL
AYCLPIAGFSLVLQGLLPTRVETAYRHLLVGRVTAINLMAQACGILCMVTLAIWTQSVIALAIGTVVQEG
AKLAFVHWTLPGRRNSLRWEPAATHELIGMGKWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFL
ANFPVQLGQDVNQRLMIPVYRDKPALESDENRRKQRQLRYALTGGILSILWLMAWIGPWLVELLYDDRYA
AAGPVIVLLASSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALFLAGVTQFGLVGGIAAMGLAV
FCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM
>gi|99082249|ref|YP_614403.1| lipopolysaccharide biosynthesis [Ruegeria sp. TM1040]
MASIYSIADFIDMLRRRVSLIVVVTFLGCVVSVWLALQKQPIYSSTEVIQITRPKIAGDLARSTAEGSSA
RRIQLIEQQLMARGTILEIVDQLDLFADRPGLLDSEIVPLMRNSVSLMGTAAAREGGSDDGAISVLTITA
NMPTREQAQAVAREFSKRTIALSQNTRLAEARETLLFFNEKEAALVRDITALEEEIANFRHENAVTLPGA
IEMRGAEITAINESLLELARQEIELRKGAEEAEATQREAYARRVREEFDAQLESLTAQRQLLVDRRAELE
ASLELTPDVDRQLASYERRQQQMQSELEVITARRAEAEVGFRLETASQGERLRVIEPAPLPDYAMGGGRK
SLAIKGALASFVLGVLAAFALDLRHPVLRSSGQMKRETGLSPVVTIPVLTTRKKGLFARLFALGGRGTER
HARS
>gi|99082250|ref|YP_614404.1| exopolysaccharide biosynthesis domain-containing protein [Ruegeria sp. TM1040]
MTPVRPTRPSRPSPAKVETDVHAETRESLTARRSARRFQPADDDTSVAASRVARQPASRESRPEQDASVT
PAAQIDIAPPLQREANASLPAALPDPWHIMRHVEVTGLNERRSRLPLVDFFRSSPTARAFDLLRTRMLHS
LRAHGWKRVAVCGPTPGCGASFTAANLALSLARVPNSRTVLMDMNLRNPGIARSLGLERSALYNGDMLGF
LRGEIRLEEHLVAASDRLALGLNTSTFHNAAEVLHETRCASIIDDLVERTRADVVLFDLPPVLHNDDVAA
FLPQVDGVLLVSDGSQTTARHLKACEKMLAGHTQLLGVVLNRARNEDEFSGGA
>gi|99082251|ref|YP_614405.1| undecaprenyl-phosphate galactosephosphotransferase [Ruegeria sp. TM1040]
MKTLDHGALRRPTGRDFPEIALAEALREVGPIYSHGGYAAFGKRALDIGLVLLALPIALPLLLACVVALW
FESGSPFYRQKRLGKDGRVFSMLKLRTMVPDAEALLQWHLARDPELRREWERDQKIKDDPRVTRLGRMMR
VTSLDELPQLWNVLIGDMSLVGARPMMVDQLSIYGKADAYFALRPGITGPWQVGERNETSFADRARIDEA
YCRNLSFKEDLNILFRTLGVILRSTGY
>gi|99082252|ref|YP_614406.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MGYAYLRGLRNARLQNNNDETSTVFRSCSVPTFQKMRSAYGRRVVKDVFAPNGGVFINRLVEYVTGQGHD
FENMLAQKLAISEPLSSSAQVLPVYEHSLVFGLAERVCNDTSIGYALAYQCTLRDAGLVGYAVSASETAG
EALYTLSRLSNVFEVVSASASGGLVDLRWDFGSQGKLDLRHWSEFIATLLVRSLKTLCTGAVAPVGVEFT
HTAPSSSEQAVLAFGVKPTYRGRLNRLTFREQDLRQPLRSADAGLLRLLLEHAELLRRRPDRNSNDLSIT
VERLIMDGMSEGDASLAQVAESLDMSQRTLSRKLASEGTSFFAILEGVRKSLALRYLQQNEKSLSEISFA
LGYSSLSSFNDAFRRWYDQSPGSYRSDALKEAAVKS
>gi|99082253|ref|YP_614407.1| 2-dehydro-3-deoxygalactonokinase, putative [Ruegeria sp. TM1040]
MSQLAETWFAFDQTHRPARLWRMRNASADGTVHIAHSLDEAREIAQDASLVTHAASDGLALTLPAATADL
RLAPKDGVLRLAAMAQTKPHAWLSAACVRIKGFLELNKDWDGVLCLPGFDTTYWVLISANEVVSALGFVT
SPLVEALSPVALDTEIDRDALLAPLQDVMSKPEALALRLAESRSQWQNTALNDAGAHSQIWGAALGAELA
AARAYWLGQNIALIAPSALTAPYKAALASQYVPFTEADEAQMTLKGFASAYAAYTQST
>gi|99082254|ref|YP_614408.1| hypothetical protein TM1040_2414 [Ruegeria sp. TM1040]
MQQASDFLEESQILARCLEAAPDRIFATKTQFKSWTVDDILGHLHFFNAAAEAALAGADAFDAMMAPAME
RFSSGGKILDLQFPWLGDLQGRALFDAWQQGAARVAEAYEAADPKARVKWLGPEMSALSSITARQMETWS
HGQAIFDLLGETRHESDRIRNIAHLGVATFGWSFRVWGQDVPEPAPYVELTAPSGAIWSWNAPQEANRVT
GSAVEFAQIVAQTRNWKDTAVKANSEVAQRWMQQAQCFAGPPNSPPAPGTRFCAPS
>gi|99082255|ref|YP_614409.1| putative RNA methylase [Ruegeria sp. TM1040]
MMADTSFEIFLVAPPGLEHVLCEEAREAGFEAARQVAGGVSFEGTWEDVRRANLVLRGATRVLARIGSFR
AFHLAQLDKRARKFPWGDVLRKDVPVKVEVVTNKKSKIYHAGAATQRIETAITEELGAPIAPDAPVTLKV
RIDDNTCIFSVDTSGEGLHKRGHKVAVGKAPMRETLAALLLRACGYDGSEPVVDPMCGSGTFVIEAAEIA
SGLTAGRSRSFAFEQLANHDATAWTDLKASMPEAVPTVCRYFGSDRNTGAIEMASQNADRAGVEGICHFT
HAAVSDLQRPEGPAGLVMVNPPYGARIGNKKQLFAVYGAMGEVLKTRFSGWRVGIVTSDTALARATGLPF
LPVGAPIAHGGLKVRLFQTAPLP
>gi|99082256|ref|YP_614410.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MRKYLLTAVAAGAVIAATGSYADEAAAQKWIDEEFQPSVLSKAEQLAEMQWFINAAEPYKGMEINVLSEG
IPTHSYESEVLTKAFEEITGIKVNHQILGEGEVVQAVQTQMQTKRNLYDAYVNDSDLIGTHSRLQLAYNL
SDMMEGDFKDVTNPGLDLDDFMGTQFTTGPDGDLYQLPDQQFANLYWFRKDWFDREDLKAAFKEKYGYEL
GVPVNWSAYEDIAEFFSEDVKEIDGTTIYGHMDYGKRAPDLGWRMTDAWLSMAGAGSKGEPNGVPIDEWG
IRMEEGTCNPVGASVTRGGAANGPAAVYAIRKWDEWLRKYAPPGAASYDFYQSLPALAQGNVAQQIFWYT
AFTADMVKPKSEGNNTVDDSGTPLWRMAPSPHGPYWEEGQKVGYQDVGSWTFLNSTPLDRAQAAWLYAQF
VVSKTVDVKKSHVGLTFIRDSSVNHESFTERAPKLGGLVEFYRSPDRTAWSPTGINVPDYPKLAQIWWQQ
IGDVNSGAFTPQEAMDRLAQEMDITMGRMQRADEQANVYGGCGPRLNEEKDAEWWYANGGAKPKLENEKP
QGQTVNYDELVARWAAN
>gi|99082257|ref|YP_614411.1| ABC transporter related [Ruegeria sp. TM1040]
MALELRSVTKRVGGDLHIKETSLTLEPGHFNVLLGATGSGKTSLIKMMAGLDPIASGSVLMDGQDVTRLN
TQKRNISLVHQFFINYPHMTVYDNIASPLKVAGMAKSELDDRVQEAAKILQLTPMLHRRPHELSGGQQQR
TALARAIAKESRAVFLDEPLANLDYKLREELRDQLPELFAGRGAVVVYATSEPEEALLLGGKTALMRDGR
VTQFGPTAEIYRNPENVEAARVFSDPPINTATITKQGFEARLGPDVRWTLDGAAASLKDGTYTIAIRPHH
VTPVASSAGLVRLNGRVQVTELSGSESSAHFDLAASGQETSWVSLSHGVHPYEVGELHDFYMDPRAAYVF
APDGSRVA
>gi|99082258|ref|YP_614412.1| ABC transporter related [Ruegeria sp. TM1040]
MAKITLSKLRHSYLSNPKSDSDYALKEIDLDWQDGGAYALLGPSGCGKSTLLNIISGLLVPSEGQILFDG
QDVTKLPPDQRNIAQVFQFPVIYDTMTVYDNLAFPLRNRGRDEATVEQRVMAIAEMLEVTEMLNQKAAGL
SPDNKQKISMGRGLVREDVNVVMFDEPLTVIDPHLKWKLRSKLKELHQRVKATMIYVTHDQTEALTFADQ
VVVMQLGEVVQIGTPVELFERPAHTFVGHFIGSPGMNIIPCSYDGAAKVEGHDIVLEGPVRGTPNGQTEI
GIRPEFVSLSDSGLPATVTKVSDVGRHTVVECDCLGHKVNAVIEEGAAPEKGAQTHLAFRQDQTRLYVDG
WLATDPE
>gi|99082259|ref|YP_614413.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MKTENQKAWFFVLPVLLLVAFNALIPMMTVVNYSVQETFGDNVFFWQGLDWFQQILRSDRFHAALGRQFL
FTFLILIIEVPLGIAIALSMPRKGFWVPVCLVLMALPMLIPWNVVGAMWNIFTLPDIGLLGYFLNHVLGI
NYDMTQDPVAAWVTIVTMDVWHWTSLVVLLSYAGLVSIPDAYYQAAKIDGASNWSVFRYIQLPKMKTVLT
IAILLRFMDSFNIYTEPFVLTGGGPGNSTTLLSIDLVKIALGQFDLGPAAAMSLIYFAITLLVSWLFYTL
MTKDDQN
>gi|99082260|ref|YP_614414.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MQKRSIVPIVYILFLMLPIYWLVAMSFKTTNEILSGFSLFPQTFTLENYKVIFTDPSWYWGYINSILYVS
INTVISVAVALPAAYAFSRYRFLGDKQLFFWLLTNRMAPAAVFALPFFQLYSAVGLFDTHLAVALAHCLF
NIPLAVWILEGFMGGVPKELDETAYVDGYSFPRFFVSIFLPAIKAGVGVAAFFCFMFSWVELLLAKTLTA
VAAKPIAATMTKTASSAGYELGLLAAAGTLTIIPGAIVIYFVRNYIAKGFAMGRV
>gi|99082261|ref|YP_614415.1| hypothetical protein TM1040_2421 [Ruegeria sp. TM1040]
MLSWMAWTWPTALVFIGIFSAIGVLILLEIRNPGGDARKGVLGLTTTRGDRLFISLLGTSYIFLAWLGLM
GMPLWTPLGLAIAWGIFCFWKV
>gi|99082262|ref|YP_614416.1| CopY family transcriptional regulator [Ruegeria sp. TM1040]
MDHCDFSPVAARTAKLGKMRKKQTHSLLTEVELEFMTVVWDLEKGSVRDILAELNKVQERAYTSVATVLK
IMEQKGFLTSERVDRSLVYRPAIPKAEYQKTSLKNLSSKLFNDAPAALVARLVDDEDITDAMLEEMRALL
NERLGDNES
>gi|99082263|ref|YP_614417.1| peptidase M56, BlaR1 [Ruegeria sp. TM1040]
MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFLVVALNAIGIG
HPPTLSDVLVSQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVATVFVVIGTAVSLFLLGSAIL
RLHRALASAYRWKRIGRVDLLLSDDTAVAYSTRGLFRRYVVLPTSLLNDPQDLRLTLAHELQHFRQRDVE
IAFLMECLRPLLFWNPAFYLWRRDMRAVREYACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRS
PSVALLERREILHTPMLARRIIAVTEQPPRGRLGLVWGGVSTAIGCAVIATAFLIQRPTDWSHDRLMLST
VVNLERMAQRSSNQVAGPQWTSSILIPAGR
>gi|99082264|ref|YP_614418.1| 3-hydroxybutyryl-CoA dehydrogenase [Ruegeria sp. TM1040]
MDVKKVGIIGAGQMGNGIAHVMALAGFDVVLNDISQQALDSALSLIQKNLARQASKGKIADAEVAAAMGR
ISTSLTLADVGKTDLVIEAATERETVKQAIFEDLLPHLEPHTILTSNTSSISITRLASRTDRPERFMGFH
FMNPVPVMQLVELIRGIATDEETFQTCQTVVEKLGKTAASAEDFPAFIVNRILMPMINEAVYTLYEGVGS
VRSIDESMKLGANHPMGPLELADFIGLDTCLAIMNVLHDGLADTKYRPCPLLTKYVEAGWLGRKTQRGFY
DYRGEVPVPTR
>gi|99082265|ref|YP_614419.1| hypothetical protein TM1040_2425 [Ruegeria sp. TM1040]
MVEEMSYELKSADALVSELCSYGESKLRVRGPERDFGTPYISFLGGTEVFGRFVERPFTQGIESQLGLTC
INLGCVNAGIDAFLHDEPLMEIAASGQMTVLQVMGAQNLTNSFYKVHPRRNDRFLRAYDTLAHLFPEVDF
TDFNFNKHLLTSLKAISEDRFERVCAGLQETWLTRMGRVVDALDGRVVLLWMRYDMSTTDVLGPAPCLVD
RSMVDVLRPRLFDVIELEVTTAGQAQDIPGMIFGPMDLPAARLMIGPKEHDRIADVVASRLLKMLSTA
>gi|99082266|ref|YP_614420.1| electron transfer flavoprotein, alpha subunit [Ruegeria sp. TM1040]
MAVLLLAEVNAGELALDATAKAVSAAKSLGDVTVLAAGASAAAAGEAAAKIDGVAKVLVAEDESLGHRLA
EPTAALVAALASDYSHIVAPATTDAKNILPRVAALLDVMVISDVTAVVDADTFERPIYAGNAIQVVKSAD
AKKVISFRTSTFDAAGEGGAASVETISATENPGLSSWVEDKLAESDRPELTSAGVVVSGGRGVGSEEDFK
IIEALADKLGAAVGASRAAVDSGFAPNDWQVGQTGKVVAPELYIAVGISGAIQHLAGMKDSKIIVAINKD
EEAPIFQVADYGLVADLFQAVPELTEKLG
>gi|99082267|ref|YP_614421.1| electron transfer flavoprotein beta-subunit [Ruegeria sp. TM1040]
MKVLVPVKRVIDYNVKVRVKADGSGVDLANVKMSMNPFDEIAVEEAIRLKEAGKADEVVAVSIGVKQAQE
TLRTALAMGADRAILVVAADDVHQDIEPLAVAKILAKVVEEEQPGLVLAGKQAIDNDMNATGQMLSALLG
WSQATFASEVDIDGDSAKVTREVDGGLQTISVKMPTIVTVDLRLNEPRYASLPNIMKAKKKPLDEKTAAD
YGVDVTPRLTVVETKEPEARSAGVIVGSVDELVAKLKEAGAV
>gi|99082268|ref|YP_614422.1| ATP:cob(I)alamin adenosyltransferase [Ruegeria sp. TM1040]
MVVLNKIYTRTGDKGDTALGNGARVAKHSARVTAYGTTDELNAQVGVARLAAEAEMDAALARIQNDLFDL
GADLCRPDMHLDETAEYPPLRIAQSQVDRLEAEIDAMNKDLSPLRSFVLPGGSALSAHLHVCRTVARRAE
RLTTELAGAEDVNAAALIYLNRLSDWFFVASRVANEHGAKDVLWVPGANR
>gi|99082269|ref|YP_614423.1| hypothetical protein TM1040_2429 [Ruegeria sp. TM1040]
MGSPLYILGILAMAAVVVVLAIGIGGFGVGGEFNRKNGNKMMQLRLFFQFVAVVFMLAFAYFAGFGN
>gi|99082270|ref|YP_614424.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MTKTLLITGCSSGIGHAAAHDMRARGWRVFASCRQQRDCDRLRAEGFESPRIDYIDAQSIQSGLAEVLAA
TGGRLDALFNNGAHGLPGAVEDLPTEALREIFETNVFGWHELIRQVIPVMRAQGHGRIVQNSSVLGLVTY
PWRGAYAATKFAIEGLSDTLRLELTGSGIEVILIEPGPVTSKIRENAIPHFEKHIDWKNSPIRDRYEGSL
LKRLYHSSGPDAFELPPSAVSRKLAHALEARRPKPRYYVTTPTYIAGTLRRILSTRAIDRILLRYR
>gi|99082271|ref|YP_614425.1| SH3, type 3 [Ruegeria sp. TM1040]
MSRFVLVSFAGLALAFYELSGGADFAPPERPATDVAQEQTSTARERGRIVSRPAETQLANPVLTPYSAAS
GSVVADGGADLITAATGSRVEPAVERTGTEGAAAVSISLRDPASVASLPQPISLNLPVTGLRIASVEAGL
GAITAEAPEPTRQAIEPEPIGEFRKVRASRANVRLGPGTNYPVLMQLLAGDNVRVLNDDESGWSLLENPK
TGQVGWIAASLLSAKQS
>gi|99082272|ref|YP_614426.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
MTDIVDDPTSPEMPANGELREPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLSSS
GGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFI
AEAMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANGASGIAVGMATNIPPHNISELIDACVHLIKA
PNAADDTLLQYVPGPDFPTGGTIVEPKENIAQAYRTGRGSFRLRAKHEIEDLGRGQWQVVVTEIPYQVQK
SKLIEKIAELIQTKKVPILADVRDESAEDIRIILEPKSKNVDPEVLMGLMHRNSDLEVRFSLNMNVLIDG
VTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMAKIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKAALMR
ENWDREHPRAFTEAEYVTPAAGDGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLGS
EELQWKKITEQLRETKKQFGKNYEGGARRTQFAEAGEIEDVPLEAMIDREPITVVCSQMGWIRAMTGHID
LSRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPNEVEIVDLFIH
NPEGRLLVASDAGNGFVCAEKDIVAQTRGGKQVLNVKDDERAKICIPVAGDHVAVVSENGKFLVFAIEEM
PELTRGKGVRLQKYNMARGRQGALELDGGLADVTTFNWDEGLHWEMGGGKIRHETDLTQWLGKRAGIGKR
PPYGFPKDYKFK
>gi|99082273|ref|YP_614427.1| hypothetical protein TM1040_2433 [Ruegeria sp. TM1040]
MLRTIALLALTVFVAACTPPSPDDALRDLGSFKLGHNIVVAPKVQMVPGSRPVEAQEWVDLLTNEMSTRF
SQYEGDQLYHFGLSVEGYFVAPGGVPLVLSPKSVLAIKVTVWDDAANKKLNDEPKTFTVFETTSGESFLV
GSGHARTREEQMLGLARNAVREIETWMEEQHKENGWFDAQIENPEENAAVAASE
>gi|99082274|ref|YP_614428.1| elongation factor Tu [Ruegeria sp. TM1040]
MAKEKFERNKPHVNIGTVGHVDHGKTTLTAAITKYFGDFKAYDQIDGAPEEKARGITISTAHVEYETEGR
HYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMPQTREHILLARQVGVPALVVFMNKVDQVDDEE
LLELVEMEIRELLSSYDFPGDDIPIIAGSALAAMEGRDPEIGENKIKELMAAVDEYIPTPERAVDQPFLM
PIEDVFSISGRGTVVTGRVERGVINVGDNIEIVGIKDTTTTTCTGVEMFRKLLDRGEAGDNIGALLRGID
REAVERGQVLCKPGSVTPHTKFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVTLPEGTEMVMP
GDNLKFEVELIAPIAMEDGLRFAIREGGRTVGAGVVSKILA
>gi|99082275|ref|YP_614429.1| hypothetical protein TM1040_2435 [Ruegeria sp. TM1040]
MAKATNLAERSKMTGRVKVADTAHDNNSGMTSQDPQEGGSGEIYDRRTLTYANSFDDRWTSLAIRTLEWL
TGKFTILRMVSKFEARNADYRGNKFWRGALDVMGIELKTPEEQINNIPETGPVVVVANHPHGMVDGMIFA
DLIGRRRLDYRILTRSVLTGLDEAATSFMIPVPFPHDPDAQRKMVEMRAKAMAHLKDGGVVALFPSGVVM
SSDSWWGPAVEREWNVFTAQLIRRSGAKVVPMFFPGRNSRAYQIACQISPILRQGLLLHEIVRSCNKPQA
PVVGEPLTDAQMERLHSDPRGFMAWLREHTLNLGSKR
>gi|99082276|ref|YP_614430.1| phosphotransferase system, HPr [Ruegeria sp. TM1040]
MARKTLKIVNEKGLHARASAKLVEVVEGFDATAEVIKDGMSASGDSIMGLLMLAASKGTTIDVETSGPDA
EALASAVEALVADKFGEGY
>gi|99082277|ref|YP_614431.1| PTS system fructose subfamily IIA component [Ruegeria sp. TM1040]
MIGIVIVAHGGLAKEYLAAVEHVVGRQPALVAIAIGPEDDRDAKQDEICTAANSVDVGDGVVVVTDLFGG
SPSNLSLRACAPANRRILYGANLPMLIKLAKSRHLPVADAVRHAMEAGRKYINSQNVNPEGGVA
>gi|99082278|ref|YP_614432.1| hypothetical protein TM1040_2438 [Ruegeria sp. TM1040]
MTPKQSPNSETGAVTEPPLVLVTGPSGAGRTTAINVLEDLDFEAIDNLPLRLVPALVAAGGADRALVLGL
DPRNRDFSTEAMVDMIDMLKARRGLKTTVLYLDADAEILLRRFSETRRRHPLSPAESPELGVSRELDLMQ
PVKERSDVVIDTSDLNVHQLRAEVERLFAPSGRRLAVSLHSFSYKRGIPRNVDMVFDCRFLSNPYWEPAL
RVHDGRDQEVQDYVMSDARFQGFFDRVLDLTLSLLPAYREEGKSHFSIAFGCTGGQHRSVTLAETLAKAL
AREGQQVSIRHRELPGQQLK
>gi|99082279|ref|YP_614433.1| Hpr(Ser) kinase/phosphatase [Ruegeria sp. TM1040]
MWSVCRSERVNTASPDLDVILLHASCVALDERGVLLCGPSGSGKSALALELMARGAILVADDKTEVFRDG
AVLRARAPETISGLIEARGVGLLRAETLAQVRLCVVVDLGQLETDRLPRHLKEEVLGISLPKVNRIDGAH
FPAALIQYVKGGALDPETEPKL
>gi|99082280|ref|YP_614434.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MRDSSMTDTHRQTGRDSRRDGDLVLGDDWVAPEQTVGREMRAKRARRGWFSLRGSPLARKIITFNLIALI
ILVSGILYLNSARQSLVYQRLGTLVSEAMLATDVLEVQLFEGGEAGVTPSAEDISRTLDNISLRGGVEIF
VFDTSLTLLDQQKGVMRADALNRLNDNEGGRTLITDTLKAIWSAVGGESAPENVVAEIDLTEPQLLSLIQ
RALSDGTQVGAVPDSAGGTVYAATNPILQQGQATGVLLMTSATGEIDRLVRIERERVLQMFIVALLVSIG
LSLVLASTIANPLADLAEAAELGKDRDNDKVKPGRIRIPDLSARPDEIGRLSRALRGMVKALYNRIDSNE
QFAADVAHEIKNPLASLQSAVGTLRMVHREDQREKLMEVIEHDVRRLDRLVSDISNASRLDAELVKEDEE
DFDLLKMLGNLNQYLGEDARGKGIDYITELPNEPILIRGLEARLAQVFVNLITNAISFCEEGDAIRVWAR
RRDNRVLIVVEDTGPGIPEQALSKVFKRFYSQRPEEHFGNNSGLGLAISKQIVEAHGGVIWAENIRPTEA
DLTSEPLGARFVVGLPV
>gi|99082281|ref|YP_614435.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MSKIALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDIKMPRMDGMDLLQRLRQK
TQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEAVATDEVGTAPETKVMERGH
LRMDPLRHAVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRDQLMDVAYDDQVYVDDRTIDSHIKRLRKKM
RSADADFAAIETLYGIGYRYNEE
>gi|99082282|ref|YP_614436.1| phosphoenolpyruvate carboxykinase [Ruegeria sp. TM1040]
MTSGRVNPNFRLEDQGIEGLGNVYYNLMEPALVQEALSRGEGNLGKGGAFLVTTGKFTGRSPKDKHVVKT
ASVADTIWWENNAEMSPEGFDALYADMVEHMKGRDYFVQDLVGGADPVHAINVRMVTELAWHNLFIRHLL
RRPDREDLDDFIADFTIINCPSFQADPNKHNCRSETVIALNFDRKMILIGGTEYAGENKKSVFTLLNYLL
PEKGIMPMHCSANHAKGNPVDTAVFFGLSGTGKTTLSADPDRVLIGDDEHGWASNGTFNFEGGCYAKTIN
LNPEAEPEIYATTEKFGTVIENMTFDPETFDLNFDDDSLTANMRCAYPLHYISNASASARGGHPKNIIML
TCDAFGVLPPIARLTPAQAMYHFLSGFTSKVAGTERGVTEPEPTFSTCFGAPFMPRRPEVYGNLLREKIA
AHGATCWLVNTGWTGGAYGTGSRMPIKATRALLTAALDGSLANAEFRKDPNFGFDVPVAAPGVAEVLLDP
RRTWDDKAAYDAQAEKLVQMFSDNFEQYLPYIDEDVKAAAIC
>gi|99082283|ref|YP_614437.1| lipolytic enzyme, G-D-S-L [Ruegeria sp. TM1040]
MIRRALLLLSFCFLTACGATVTGTDTRILAIGDSLMAWNGLSQQSIPDVVSKELGEPVADRSVLGARMIY
RLPISGAAGLSIPKQYRGGKWEWVILNGGGNDLWLGCGCGQCDRKMDKLISQDGATGAFPELVMRIRESD
ARVIMLGYLRTPGRSSPIENCRDEGDLLDARLAQLAAGDAGVTFLPAADLVPYGDLSFHAPDRIHPSPKA
SRIIAERVAAIINAQR
>gi|99082284|ref|YP_614438.1| isovaleryl-CoA dehydrogenase [Ruegeria sp. TM1040]
MRMPHDGQLDGQDMKPNTPLLPELLALTKEALPPLDELLERATARVRDNVSNNGRVSGALVEQHQYAAHG
LAWLATYVYSLRQMHRWAEALERDAKFGEMEQLIHQIAFGEYLWQIYGGIQMNQGEVLRLQDLGLSQDDQ
RALMAPAVMMLTQSGNTQAARVRLVELMEQQAGSTMFGASGLDEELEMIRDQFRRYAQEKVEPFAHDWHL
KDELIPLDVIEELAEMGVFGLTIPEEFGGFGLSKASMCVVSEELSRGYIGVGSLGTRSEIAAELILAGGT
DAQKQQWLPKIASAEILPTAVFTEPNTGSDLGSLRTRAVKDAAGDYQITGNKTWITHAARTHVMTLLART
DPETTDHRGLSMFLAEKTPGTDETPFPTEGMTGGEIEVLGYRGMKEYELGFDGFHVKGENLLGGEEGKGF
KQLMETFESARIQTAARAIGVAQSALDIAMQYAQDRKQFGKALINFPRVSSKLAMMAVEVMVARQLTYFS
AWEKDNGHRCDLEAGMAKLLGARVAWAAADNGLQIHGGNGFALEYKISRVLCDARILNIFEGAAEIQAQV
IARRLLA
>gi|99082285|ref|YP_614439.1| hypothetical protein TM1040_2445 [Ruegeria sp. TM1040]
MTDLIPFLAPAGFVLAFIIALIAGTIKGLVGFAMPMIMVSGLSSIMAPDLALAGLILPTLVTNGFQALKQ
GPAAAWASMKRFRTFLLVGGLFLLMSAQLVRLLPPQVMLLIIGAPITLFALTQLLGKQLVLHEASRRMEI
GIGAFAGFIGGFSGIWGPPTVAYLTALGTEKKEQMRIQGVIYGLGAVVLFFAHIGSGVMRGETLPFSILM
IVPALLGMWVGGRLQDRIDQKTFRRATLFVLLIAGLNLLRRAWVG
>gi|99082286|ref|YP_614440.1| cation diffusion facilitator family transporter [Ruegeria sp. TM1040]
MPFGLNTRLTASQIASGTIVVSVVVLLLKLGAWAMTGSVALFSDAMESLVNVSAAVLAWFAIRYAQRPAD
DGHPFGHHKAEYFSAVIEGIMIILAAVLILHQAFATLTAGTRADLSAIGLGVNGIALVINLVWAQVLLRA
GKRVNSPAFAAGGRHLMGDVWTSAGVMVGLLLVLATGWHILDPILALLVAVNILREGLHVVSDSIDGLMD
KAASPDEQEKIASVILGSGGGALQIHDIKTRRAGKAIFVEFHMVVDGEMSVAESHDICDRLEAEIEAALP
GVHVTIHVEPDNKLEADGIEPPAL
>gi|99082287|ref|YP_614441.1| NADPH-dependent FMN reductase [Ruegeria sp. TM1040]
MADPVLLILSGSLRKEATNLKLAREAARLFGSAEVIEGGLNMPLYDGDLESAEGIPAVVQALADQIARAD
AVVISTPEYNKGPSGVLKNALDWVSRTEGNPWQDKPVAVMSAAAGRAGGERAQMVLRSFMVPFRANVLPG
PEVHLAGSSKEFDDAGRLTSEQYTKTLLALMTGLRALATRA
>gi|99082288|ref|YP_614442.1| OmpA/MotB [Ruegeria sp. TM1040]
MSFAKLPALGVLTAAVALSACDDPASYGAPGGINRSQNGAIIGGLIGAGIGAATADDDKAETIIGTAAVG
ALAGGLIGRELDKQEAELRQSLDNDSISIVNTGDRLIVSLPNDLTFATDSAAISSVVRSDLRKVAGSLQR
YPGSIVQVIGHTDSDGAASYNYSLSERRANAVADEIAAGGVSYGRMRIIGRGEDQPVASNLTPEGKARNR
RVEIVIIPQAS
>gi|99082289|ref|YP_614443.1| helix-turn-helix, type 11 [Ruegeria sp. TM1040]
MTRSNRMFELIQILRAAPASVRAEDLAAQLEVSKRTIYRDIAALQAMRTPVEGEAGIGYMLRKGYDLPPL
NFDEEEIEALHVGLAMLMRTGDGALQQPAARVGRKICDVHASAEWLQVAPYGAPLDNPEEGCVSKAILRQ
AVRSSQKLHLAYVNGAGERSERVLRPLALIYHTDCTLLAAWCELRGGFRHFRTERMMSAELLDCSFAAEA
DVLRKLWQEQESNTYVYKA
>gi|99082290|ref|YP_614444.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MQRDEQAYHYGVIRRAIEVIDADGGDLSLEELAARMGMSAAHFQRVFSSWAGVSPKRYQQYLRLGHAKAL
LHEDLPLLETAHAVGLSGSGRLHDLFVRWEAMSPGDYARRGAGLTVRWGWFDSPFGQALTMGTEKGLCGL
AFAAEVGPEAAWEDMRARWPKAEFVEDPDALRPRVEAAFAQKGETALHLIGAPLQIKVWEALLQIPEGQA
TTYGDIAEAIDNPRAVRAVGTAVGKNPLSWLIPCHRVLRKGGGMGGYHWGVPVKRAMLAFEAARTETDPK
AVA
>gi|99082291|ref|YP_614445.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III [Ruegeria sp. TM1040]
MVSASFASQCAARGKCFAFLICAPVPQRAKEAPMAKQLDYHTLREIFTRFQDAEAEPKGELDHVNVYTLV
VAVALSAQATDAGVNKATKDLFKIADTPQKMLDLGEEGVIEHIKTIGLYRNKAKNVIKLSRILVDEYGGE
VPCSRASLESLPGVGRKTANVVLNMWWRYPAQAVDTHIFRVGNRSGICPGKDVNAVERAIEDNIPVDFQL
HAHHWLILHGRYHCKARKPLCATCIIRDLCLYEEKTL
>gi|99082292|ref|YP_614446.1| PfkB [Ruegeria sp. TM1040]
MTKTYQLVGIGNAVVDVISQCDDSFLDHMGIEKGIMQLIERERGEVLYAAMKERVQTPGGSVANTIAGAG
ALGLSAAFIGRVHDDALGRFYAEAMQDDGVDFVNPPVAGGELPTSRSMIFVSPDGERSMNTYLGISSELS
SADVSNAVAGQAQIMFLEGYLFDKDKGKSAFMEAARDCRAGGGKPGIAISDPFCVERHRADFLKLIETEL
EFVIGNEDEIRSLFETDDLEAALAKTAAICPLVVCTRSGDGVTVVSQEGRIDVPVIKVVPVDATGAGDQF
AAGFLFGLAEGRDLETCARMGNACAAEVISHIGPRPKADMRAVLKQAGLL
>gi|99082293|ref|YP_614447.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MFRSKNMRISRKLPLLFAGFCAGTSFLLIAASLIAFNRFAERSVQDQMVSLLADRSYSVRQIISNIETDL
VSLSQSPATSSALVAFDEGWEALGPDAQAALQTAYITQNRHPSGAKHKLDRAEGEAAYHDAHETFHNGLR
TLIEVKGYYDAFLINPEGDIIYSVFKELDYATNLSDGKYAQSGLGAAYRAATKAAEREVVFADMDPYAPS
AGAAAAFLATPVKGSDGSLIGVIAVQVPVDMLGVITNNSDGLGKTAQVFLVGADFKARTKSRFDGGFGVL
ETLPEVDHIKEALRGETGFSVGTIGLDGHPVYAASRPLGLELANWALVVEQDVSDVMAPVRQKAWALVLI
GLAVCTIMSLIGWRIATSITRPLHQIAVGMDRVASGDVATTVEEAQRSDEIGDIGKSLLSLQEDLKVARD
AEEQRIEQQREQEKVVENLSAGLLQLSQGDFSATIDTPFSGEHETLRADFNKTVTTLNETLGHVVTAVSR
IRNGAAEINQSSNDLSHRTESQAATLEETAAALEEMTASVKSAADSARSVETITGEAKQEAEASGKVVQN
AVTAMTEIEESSKQIAQIILVIDDIAFQTNLLALNAGVEAARAGEAGRGFAVVASEVRALAQRSSDAAME
IKTLIGESSKQVESGVDLVGKAGEALNMIVERVNNIAQLVSGIAEGASEQSNGIEEINTGMVQLDQVTQQ
NAAMVEEASAACQMLDTDASELGGVVAKFKLSGQTAQNTPTTSTAVSSAAASDSWDLDAETDETPMAPTA
HGVPTSNGNAAYNFYEDF
>gi|99082294|ref|YP_614448.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MDHVDFVLEQWRRERPDLDVTAMGVIGRVSRLQLEYSKAMAKTFASFGLNGAKFDVLATLRRAGVPHCLS
AGDLMKATMVASGTMTNRIDRLEADGLVTRTTNPSDSRSFLIALTDKGIALIDQVVEAHVATQASLLEGL
STADVENLAQLLSKALTAAGRS
>gi|99082295|ref|YP_614449.1| hypothetical protein TM1040_2455 [Ruegeria sp. TM1040]
MTTSFLPGESPFLVALLRALPAGILLLALVRQLPPAALLPKIMVLGALNFSVFWTLLFLSAYQLPGGVAA
TLGAVQPLFVVGLSGALLGTQIHSKAVAAAMLGMVGVALLVLGPDARLNVTGVLAGLGGALSMASGVVLS
RKWQPDVPALTFTAWQLTAGGILLIPVAVIALPEWPSLSAHNLMGLGYMSLIGGALTYVLWFRGIARIAP
AQISLLGVFSPLTAVILGMAFANETFSIWQAIGAFVALFSVWLGGQAPRARPKSPATQVPAE
>gi|99082296|ref|YP_614450.1| hypothetical protein TM1040_2456 [Ruegeria sp. TM1040]
MGPGDVYRIVSEREDAFVVIEGRVSFDEALLPQYSEANPSATEEPIEIPAQVTGLLLGQRMFDQPVEGEI
ILEAHCLGPWCGSLVSGTRYLFFARQIEGRVVAVVEPCGGFFFSAEDGRAGDTVLQCHQGGACPSQLPDN
FDGALIPSDKE
>gi|99082297|ref|YP_614451.1| NUDIX hydrolase [Ruegeria sp. TM1040]
MSKIPAKEMTPEQIAALPYRPNVGVMMINAAGAVWVGQRMDRHKEAWQMPQGGIDKGEDARVAALRELEE
ETGVTPDLVEVIAESDGWLPYDLPHDVVPHFWGGKYRGQEQKWFLLRFLGRDDQINIATDSPEFSAWCWQ
PVEQLVDKVVPFKKEVYARVVEEFKAHL
>gi|99082298|ref|YP_614452.1| 2,4-dienoyl-CoA reductase [Ruegeria sp. TM1040]
MAAYPHLLAPLDLGFTTLKNRVLMGSMHTGLEETRDWNRVAEFYAARARGGVALMVTGGIGPNLEGSVLP
GAAMMTTEKDVENHSVVTKAVHEADGKIAMQILHAGRYAYGPKCVAPSPVKSPISPFPPTELDEEGIEKQ
ISDIVNAARLAQEAGYDGVEIMGSEGYFLNQFLVTHTNKREDRWGGSYENRMRLPVEVVRRVREAVGPEF
ILIYRLSMIDLVPNGSTFEEVVQLAKAVETAGATIINTGIGWHEARIPTIATSVPRAAFAWVTQKLMGQV
SIPVITSNRINTPEVAEDVLAQGCADMVSMARPMLADADFVAKAAAGRGDEIAPCIACNQACLDHTFGGK
LTSCLVNPRACHETELTLTPAETIKSVGIVGAGPAGLSTALAAAERGHKVTLFDAADEIGGQLNMAKQVP
GKEEFWGLVDWYRTMIAKAGVTLELGRRVDAADLKDFDEVIIATGVTPRDPHIPGQDHPSVLSYIDVLRH
KAPVGEKVAVIGAGGIGFDVSEYLLHEGESPAESLPLWMREWGVTDPADHRSGLAPEGPQPEAPARKVTL
LQRKAERHGKRLGKTTGWIHRATLKMKDVEFVGGVNYERIDDDGLHVSFGEARENPTVIKADNIVLCAGQ
VSERSLADKLAEMGITAHVIGGADVAAELDAKRAINQGTRLAATL
>gi|99082299|ref|YP_614453.1| 2-nitropropane dioxygenase, NPD [Ruegeria sp. TM1040]
MTKGEAFLDRLGISLPLIQAPMAGVSTPRLAAAVTDAGALGSIGVGALDASATRKQIEELQHLTNGPFNV
NFFCHQTPQRNPEIEGRWIQRSAPLFARMQAEPPKELSEIYTSFRDTDAFLEAVLDLRPAVVSFHFGLPK
PHQISAMKAAGLTLLASATSLEEARQIEAAGLHGIIAQGWEAGGHRGVFEPGALDARLGLLELVAVLAEQ
TTLPVIAAGGLMTGAEIARALSAGAVAAQLGTAFIGCPESNADAAYRDRLALGDETVMTAAISGRPARCL
SNAFTEWASDVPIAEIPAYPCAYDLGKALNAVATAKGVSSFGSQWAGMGADRARFMPAQALVQTLMAELA
ATI
>gi|99082300|ref|YP_614454.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MDRLTEMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYYDRAR
RVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNMVLNNRFVELISEGFD
MALRIGELEDSSLRARKLTETTKRMVAAPEYLEKYGRPQKIDDLNEHKLLHYSNQSSGNVWKLTAPSGEK
RQVRSTGWLSVNDGQSLLNAAISGLGIAYLPSYLYAEAKAEGLVEDVMPSLPVETLGIYAVYPPGRFTQP
KVRAFIDFLVHAFAEKGMETW
>gi|99082301|ref|YP_614455.1| NIPSNAP domain-containing protein [Ruegeria sp. TM1040]
MLTCVIRYQIDPTKQDQFRTYAQNWGQAIPRNGAELIGYFAPHEGSTTLAYGIYSIPSLAAYEAYRARLA
QDPLGRENYAFAQKEKFILREDRTWLTLASNPHGSAGDRA
>gi|99082302|ref|YP_614456.1| antibiotic biosynthesis monooxygenase [Ruegeria sp. TM1040]
MIAVIFEVTPADGMTDAYLDHAATLRPLFEDMEGFISVERFQSLTTPGKLLSLSFWEDEAALARWRKMEK
HRAAQAKGRSGYFADYRLRVAGVIRDYGMMEREQAPEDSRALHDRPGT
>gi|99082303|ref|YP_614457.1| lysine exporter protein LysE/YggA [Ruegeria sp. TM1040]
MILPLMIFLAPLAYSPGPGNLFFAAAAARLGLRATLLALAGYHIATLIITLAIGMGGFAALAQRPMAFEI
IKTTGAAYVLWLAWRFFRATPIEGDQPQSTVRFSDGVWLLLLNPKAYVIISLMFSQFLSLDAGHRWHEIW
IISLVFTLNNLLAFTVWILAGTQLRRVFCHSVQARGINTAFACLLVGIAIWMLFG
>gi|99082304|ref|YP_614458.1| OmpA/MotB [Ruegeria sp. TM1040]
MDLKAALVALSFASMAVVLFGGAVQAATVEIPLPGAPELLRTQETPLDTLLLPIGPVSGDDVPTRALEGR
VHRRSWRIDADLSPLEVLAPIRDALTARGFEEVYACTAQACGGFGFRFGIEVIPAPDMAVNLSNYEFLSA
QEPQSGTAVSLLVSRLGGSIYVQVIERHDPAHLLRPQTLPALGPSTQPVDRDTIQADASAQGAASNTENG
LEQALLVDAIKKGGSLSTGALRDVLQLQGHVPLLDLEFDTASAQVGEGPYDSLKHLATFMSDHESAVILL
VGHTDTVGGLQGNIALSERRAASVRERLITRYGVDGARIQVAGAGYMAPLAPNTSEEGREINRRVEAVLV
RP
>gi|99082305|ref|YP_614459.1| hypothetical protein TM1040_2465 [Ruegeria sp. TM1040]
MTKPKEPTALDLPMADPLPDETQKYFEICQEKLGMVPNVLKAYAFNVEKLNAFTAMYNDLMLGESQLSKL
EREMIAVVVSSINKCFYCLVAHGAAVRQLSGDPQLGEMLVMNYRVAPLDARQRVMLDFAAKMTRASAEIE
EADREVLRSHGFNDRDIWDIANVTGFFNMTNRVASATAMMPNAEYHGQFR
>gi|99082306|ref|YP_614460.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MTEAQTDPKYYDVVEATWPCLRCEKLGDITLRVGAGGGSRVSAATCDALVSDAQIAQAEAAMQDFDQPRL
FMIRDGQDALDGQLERLGYAVMDPVALWTVAPSMLTDVEIPRVTTFCLWEPLAIQREIWATGGIGPERLA
IMERATRPKTSILGRWDDKPAGAAFVGMHEGIAMLHALEILPHQRRKGMGVWMMRQAAYWAAEQGATELA
VLCTRANAGANALYARLGMQQAGGYHYRIKR
>gi|99082307|ref|YP_614461.1| molybdopterin binding domain-containing protein [Ruegeria sp. TM1040]
MPNPTAAMLVIGDEILSGRTRDANMYYLAGELAKHGVDLKEVRVVSDDAAAIVTAVKALSGAYDHVFTSG
GIGPTHDDITADCIAEAFGAAIDVRADARAILEEHYAKTGAELNEARLRMARIPDGAALIDNPVSRAPGF
TLGNVHVMAGVPAVFQAMVETVLATLAGGKPLLSQTLRVERGEGEIAATLSALAEKFGDLSIGCYPFQVN
GAFGANVVVRGTEGARVDAAITELARDLGV
>gi|99082308|ref|YP_614462.1| sugar fermentation stimulation protein A [Ruegeria sp. TM1040]
MAHHHGMRFPTPLIPATLIKRYKRFLADCRLEDGREITAHCANPGSMMGLAEPGMRVWLEPNDDPKKKLK
YGWRLVEHTNGHFTGVDTSVPNRALKAALEAHEIAEFAAYSEVQAEVKYGQNSRIDFLLTDAKLPRCYVE
VKSVTLSRQPGLAEFPDSVTARGTKHLRELAAMAEAGHRAVMLYLVQRTDCDRFALAADIDPAYAAEFET
AHAKGVERLVIGTTITPEGVKIGDILPS
>gi|99082309|ref|YP_614463.1| methionine aminopeptidase, type I [Ruegeria sp. TM1040]
MRSKTGRTTKDGIRIYEQADFAGMHKAGALAAKILDDIAAHVFPSQTTGEIDRIITQMVEDAGATSATIG
YKGYQHASCISINHVVCHGIPGDKKLKDGDILNIDVTVIVDGWFGDTSRMYVAGKLPRKAERLIQITHDA
LMKGIEVVKPGNTFGDIGHAIQSYAESQRVSVVRDFCGHGLGQVFHAPPNVLHYGRPGTGPVLEEGMFFT
IEPMLNLGRAETKVLADDWTAVTRDKSLSAQFEHSVGVTSDGVDIFTLSPAGRFHPTYDKD
>gi|99082310|ref|YP_614464.1| hypothetical protein TM1040_2470 [Ruegeria sp. TM1040]
MRIIAGAFRGRALASVGKGDAGAHLRPTTDRVRESLFNVLAHKMDVSGARVLDVFAGTGALGLEALSRGA
ESVAFVDDGRVAQGLIRKNIDLCRAGESCQILRRSALKLGQNPAEGHDLVFLDPPYGKSLGHKALDALRD
GGWIAPGALVVWEESAPMTPPQGFDLDDQRKYGDTHVTFLWSQGT
>gi|99082311|ref|YP_614465.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Ruegeria sp. TM1040]
MTHIAVIGAGQAGSSLVAKLRKCGFDGEITLIGAEKVLPYQRPPLSKAYLLGEMELERLFLRPESFYAEN
NITLRLGTKVDAIDAAAKTLQIGDETLSYDQLVLTTGSHPRHLPAAIGGDLGGVHVVRDLKDVDAMAPAV
TDGARALIVGGGYIGLEAAAVCAKRGVSVTLVEMADRILQRVAAPETSDYFRALHSAQGVDIREGVGLSH
LEGDAGKVTCAVLADGTRLDVDFVVVGVGITPASELAADAGLEIENGIRTDELGRTSDPAIWAAGDCASF
PYKGQRIRLESVPNAIDQAEVVAENLLGAEKAYVATPWFWSDQYDVKLQIAGLNSGYDNVVTRQGADGSM
SFWYYTGDQLVAVDAMNDPRAYMVAKRLIEAGKTADKAIVVDPEADLKPLLKA
>gi|99082312|ref|YP_614466.1| thiol peroxidase (atypical 2-Cys peroxiredoxin) [Ruegeria sp. TM1040]
MISVGDKLPEATLTRLGAEGPEAVAIQDLAKGRKLAIFAVPGAFTPTCHSAHVPSFIRTKDQFAAKGVDE
IICISGNDPFVMKAWGEATGATEAGITMLADAECSFTDAIGMRFDAPPAGLIGRSKRYAMIVEDGEVKIL
HLEESPGTCEVSAGEGLLDAL
>gi|99082313|ref|YP_614467.1| hypothetical protein TM1040_2473 [Ruegeria sp. TM1040]
MTDAHSTAKHPAAIMAEVLDEIDAARTFVARDDSFDSAQALRVALRRLRSGLTLFRPMLPTEHNKALLEE
ARWLAAEVTRLRDLYLLWQDTLTPARVALPDNTALQSLEVRVLNRIEKERQQLRTLLVSDRVQALIAQGN
EMRDTEFWKPAAHSPEKLEDLCIETLDLRLSQALKHGETLKRLDSQARDSFRKSLRKLRATAEFTQSMFP
SKKTKAFLKQLKKLLDSMVAARDASAVRDRLEDLMQDMEEGSAERHIAQELIKAKEAGVGLDHKRLQKLW
RATVGLPLH
>gi|99082314|ref|YP_614468.1| pterin-4-alpha-carbinolamine dehydratase [Ruegeria sp. TM1040]
MTEKLSDETRGPLLEPLFATGWELETGRDAIRKTYEFADFVEAFAFMTKAAIWAEKWNHHPEWSNIYNKV
TVVLTTHDVGGVSSLDAKLARKMDGLTS
>gi|99082315|ref|YP_614469.1| hypothetical protein TM1040_2475 [Ruegeria sp. TM1040]
MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTGWQPQYLTCYL
DGQLVACAPLYAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPATGRRFLVRPGYEEIGISALL
QGAVQLASDNQLSSLHVTFCTSDEAEAGREIGLMSRSSQQFHWLNDGYAGFEAFLAALSSRKRKNIRKER
KQAQGFGGSIETYTGADLRSEHWDAFWRFYQDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVP
VAGALNFIGAKTLYGRYWGCMEHHPCLHFELCYYQAIDLAIEMGLDRVEAGAQGEHKLARGYLPTETHSL
HWVADPGFRAAIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE
>gi|99082316|ref|YP_614470.1| glycerophosphoryl diester phosphodiesterase [Ruegeria sp. TM1040]
MTAPRLPLAFLQRPITHRALHGLDENCPENSRAAIRAAIAAGYGIEIDLQLSADGQAMVFHDDELDRLTD
ATGPVRARTAVELGTIALRHGDGECIPSFAEVLELVAGQVPLLIEIKDQDGAMGTNVGALEAAAITDLRD
YQGDVALMSFNPNSMAEVARLAPHLARGLTTSAYDPLEWAPLSPARCDELRDIPDFERVSASFISHEASD
VGCDRVRSLRAAGVPVLSWTLRTPAQEAEIASLVDNVTFENYLSAFGA
>gi|99082317|ref|YP_614471.1| endoribonuclease L-PSP [Ruegeria sp. TM1040]
MSIDAKLQSLGLTLPEAPAPAANYVPFVVSGNMVYVSGQISADENGLITGCLGADLDVEAGQAAAKRCAL
SLLAQVKAACGGDLGKLKRVVKLGAFVNSTADFTQQPQVVNGASDLLVEILGDAGRHARSAVSSPSLPMG
VAVEIDGVFEIEV
>gi|99082318|ref|YP_614472.1| Type I secretion membrane fusion protein, HlyD [Ruegeria sp. TM1040]
MIDPMTETAHKSWSVRGALIAGALGVIILLGGFGTWAVFSNIAGAVVASGQIEVDRNRQVVQHIDGGVVE
DILVDEGDLVTAGQTLVRLDAVDLRSQLTITEGQLFEMMARRGRLEAERDEVDTISFDAELLTLAQQRPE
VAELVEGQARLFRARRESVRREVEQLEKRAVQIEDQITGVRAQQEATREQLVLIKEELSNQQSLLDRGLA
QASVVLNLRRNQANLQGTLGELIASEAQARGRITEIEIEALKLRNQRREEAITRLRDLRYRELELIETRR
SLIDRLGRLDITAPVSGVVYGMSVRTPRSVIRPADPVLYLVPQDRPLVIAARVAPTDIDQIHVGQAVSIR
LPALDQRQTPELFGSVTLFSADAFQDETTGASYYRAEIELNAGEMDRLPEGTVLIPGMPVESFIRTADRS
PLAYLVKPLSDYFVRAFRES
>gi|99082319|ref|YP_614473.1| Type I secretion system ATPase, PrtD [Ruegeria sp. TM1040]
MNNKFANAGRAELLAVRRQSRKLYWTVALFSAFVNMLMLTGPLYMMQVYDRVLGSRSEATLLALTLLVIF
LYAMMGLLDAVRGRIMRRVAARFQAALDKRVFDAMIRRSAIANDPEAQTGLSDLESVQKFIASPGLMAAF
DLPWTPIFLAGIALFHPWLGMLAIGGGSVLIAIALLNQLLSAAPSKAAMVSGHHATLQSEEIRTEAEMIQ
AMGMRESAFQRWRHARDKALADYVVASDVTGSFSTVTKTLRLFLQSAMLGLGAYLTLQGEVSAGAMIAGS
ILLGRALSPIEVGLGQWPLVQRARKGWSNLETLLSKTPPEPIRTALPKPKAKLEVEAVAATAPGETRPLL
RNVTFRVEPGEAIGVIGPSGSGKSTLARVLTGAWRAAAGTVRLDGAALSQYDPSVLGDHIGYLPQRVELF
EGTIAQNIARLASSPDAQAVVEAAKAAAAHEMIVSLPDGYDTKVRSGGGRLSGGQMQRIGLARALYGDPV
ILILDEPNSNLDNDGSVALNNAIKRLKSHGKSVLIMAHRPAAIQECDKLLVVEQGAMVAFGPKDEVLRKM
VANHRELQPSGARRPAQGANALKGGPR
>gi|99082320|ref|YP_614474.1| VacJ-like lipoprotein [Ruegeria sp. TM1040]
MRDPAPVITELVDMIALFKKSVTAMAFSAAVLTSACATQDPAAKAAGEIFDPYENTNRSIHQFNKGLDRY
AFRPASKGYVAVVPPDMVTAFGNFAENLSKPGDAVNYLLQGNFKGAGQALGRFAVNTVLGIGGLGDPASD
FKMPEARTDFGETLHIWGAGEGAYVELPAYGPSTTRDAVGIVVDFFTNPLSQFENNPAEDLQIPAEIVDQ
LGNRGTYSDTIDSILYESADSYAQGRQIYLQNRRFELGQEDVNSEIDPFELDTGGF
>gi|99082321|ref|YP_614475.1| toluene tolerance [Ruegeria sp. TM1040]
MLRRHFLASLAAVGVSTTALPALALNESSASALINGLVSDINKVIASGKSERAMYGDFERIFQRYSDTSY
IAAYAMGVDARRATNAQKRAFSNAFQGYIARKYGSRFREFIGGRLEVTDVKKVKRWYEVSCVAYLRGQSP
FEVTFHVSDRSGKDLFFNMFIEGVNLLLTERTEIGAMIDRNGGDIDKMISDLQKLS
>gi|99082322|ref|YP_614476.1| SsrA-binding protein [Ruegeria sp. TM1040]
MAKQKTDPNYKVIAENRRARFDYAIEQDLECGIMLEGSEVKSLRAGGSNIAESYAAVEEGELWLVNSYIA
PYEQAKVFKHEERRRRKLLVSRKEMADLWNATQRKGMTLVPLVLYFNHRGMAKIKIGIAKGKKNHDKREA
QAKRDWSRQKQRLLKDHG
>gi|99082323|ref|YP_614477.1| hypothetical protein TM1040_2483 [Ruegeria sp. TM1040]
MERDTLRGSLLMALAMAAFAVEDMIIKSVAAAMPTGQVLILFGLGGMVIFAIMACAQGSALWHPGFCTRP
LLWRFVAEVSGRLFFTLAIVLAPLSLASAILQATPLVVTAGAVVFFGESVGWRRWLAICVGFLGVLMILR
PGLSGFEATSLLAVAGMLGFAGRDLATRAAPKTMSNAQLGLFGFAMLVIAGVILLSWTGGAVWPTVAQSG
TLAAAVAVGVLAYMALTGAMRTGEISVVAPFRYTRLVFAMALGIAVFGERPDVMTLLGSALVVGSGIFTL
LRNQRQKA
>gi|99082324|ref|YP_614478.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MSDESITLNLREIRAAAGLSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALIEESTR
PSGRSGEVYRTVEFPGSIAVKIVFPYDPSLGAETFHVSLKPGQSHESLPHDTGVTEEVFVLEGRMEVLRD
GDWVALETGQGLRFDADQPHGYRSLSTGAAFLNMHHYRQAALSRAAD
>gi|99082325|ref|YP_614479.1| benzoate transporter [Ruegeria sp. TM1040]
MLRNLKLSHLAAGAIVVLVGYTSSVAIIFQAIEAVGATQTQANSWLVVLGLGMGLTSLTLSLRFRMPILT
AWSTPGAALLATGLDGVSLPQAVGAFLFCGALLTLTGLTGWFERLAKLIPDSLANALLAGILFQFGLSAF
HALSDDAALVGAMGVTFLAGKVLFPRYAIPVVLLVGCLWAAGAGSFGDLDALTFSLSMPEFVAPEFSLPV
LIGVGLPLYVVTMCSQNMPGVVTLRSAGYPPPVSASLTVTGLASLILSPFGGFAFNLAAITAAICAGPEA
DENPKSRYLSSVIAGVLYCLVGLGGATVISLFLIAPKALIATVAGLALLSTIGNSLSAALAESRGREAAL
ITFMMTVSGVTFAGIGAAFWALLIGLAVTRLTTLPLPQPIKT
>gi|99082326|ref|YP_614480.1| dihydroxy-acid dehydratase [Ruegeria sp. TM1040]
MPMYRSRTSTHGRNMAGARGLWRATGMTESDFGKPIIAIVNSFTQFVPGHVHLKDLGQMVAREVESAGGV
AKEFNTIAVDDGIAMGHDGMLYSLPSREVIADSVEYMVNAHCADAMVCISNCDKITPGMMMAAMRLNIPV
IFVSGGPMEAGKIDIDSLDAKKIDLVDAMVAAASDKLTDEEVQHIEENACPTCGSCSGMFTANSMNCLAE
ALGLALPGNGSTLATHSDRKQLFLEAGRKIVEITKRHYEQNEKGLLPREIATFEAFENAMSLDIAMGGST
NTVLHLLAIAHEGKVDFTMQDIDRLSRKVPCLCKVAPNIENVHMEDVHRAGGIFSILGELSRAGLLHNDV
PTVHSDSMGEAIAHWDIAVADNQAAKDLFKAAPGGVRTTQAFSQSNRFKDLDIDRKGGVIRSKEHAFSQD
GGLAVLFGNIALDGCIVKTAGVDASILKFTGKAYVCESQDQAVNDILTGKVQAGDVVVIRYEGPRGGPGM
QEMLYPTSYLKSKGLGKDCALLTDGRFSGGTSGLSIGHVSPEAAEGGTIGLVEHGDTIEIDIPNRSIHLA
VDEATLAARRAAQDEKGWKPVAKRKRKVSTALKAYALLATSAAKGAVRQLPDDE
>gi|99082327|ref|YP_614481.1| hypothetical protein TM1040_2487 [Ruegeria sp. TM1040]
MGFPGTWMTESESVVYRVVPKCACSTIGQIMYYSDHGRFFDGDIHDSTAGLHKWAQDESKPLIESNVTAH
RAYAFTCVRNPYTRILSSFFDKICGIQRNGRRYRGNLVPQLTYEYGIEVGGEDGKQEFDQIKSFRRFLLF
ARDTIRWRRPMEPDIHWSATSGHVATFIVNGGRYDKVIWTEKFNEGMQQVLDAIETPHPVDLASIPRFNE
SEGHGPKRAHPVEDYFDDLSMHLVYEIYKRDFEVFKYDFENPANKMPIAEIDLDELHAKLGD
>gi|99082328|ref|YP_614482.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MAKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFAKRRVKCGWGE
WSLVRATLNALEAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKDFIESFDFFESDWIKTGMKED
RLIYRHYFNERTQKRLFYAAFELQKKLKLTREVPADIQVQIGSQWWCLRRRTVEAVLAMTRKRRDVMRFF
ASTWIPDETFFQTLVRHLIPEDEIESRTLTFLMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELK
TRLGRLYAARDVEFKISNEGRNLYKFLSERGRTGQRFAPRFWETESSLGRERELLILTCKKWHVAKRMLE
QIRTLTNTPAIEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYYETDRLIICLDPSALELMHDF
YSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRDAGFVRHWTVA
ERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD
>gi|99082329|ref|YP_614483.1| hypothetical protein TM1040_2489 [Ruegeria sp. TM1040]
MKKLIAALGLATVSWIPTAHSAETLVVGVENIEYLPHYYWDGDSYSGFGADVLNRFAEDEGYTLTYRALP
ISRLMQAMVNGDVDLKYPDNAFWSADLKEGKSITYSAPVVEAIDGVMVLPENLGQPVESIERLGTVLGFT
AFAWMDRIQSGAVALTENSSFSGMVRQALAGRIDGAYANQDVVRRVLTDIGMEAEALVFDEGLPHSVSNY
HLSSATHSEVVEKFDAWMAANPDVIAELKSKHGL
>gi|99082330|ref|YP_614484.1| hypothetical protein TM1040_2490 [Ruegeria sp. TM1040]
MAYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAALLNRDVQFIQA
VRPNGDAIVYRNEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIMHYGWRSQLLTSFPNAVSISP
AAGPDDKPINWISISILVLLAAVSWAIFVRLRRFKRNRLDPLFENVEDGFYAAGDAIDDRTRGLRRWFGR
KS
>gi|99082331|ref|YP_614485.1| creatinase [Ruegeria sp. TM1040]
MTARPEMYRFHNGEKAPLQFSVAEYEERIARLRSTMSDLGVEAAVFTSMHNISYYSGFTYCAFGRPYGLV
VTADQAVTISAGIDAGQPWRRCFCDNITYTDWQRDNFWRAILSVVGAQRVVGIEGDHLTLLQRGKLDHFL
APAKVVDLYEATMVQRMHKSPAELEMIRAGAAVADVGGFAIRDAVKAGVREIDVAMAGRDAMELEIARRF
PDAEYRDTWVWFQSGLNTDGAHNPVTARQLQRGDILSLNTFPMISGYYTALERTMFVQEVDPASLKIWEA
NVAAHEYGMSLLKPGASCAEITHKINRFFEERDLLQYRTFGYGHSFGVLSHYYGREAGLELREDIDTVLE
PGMVISMEPMLTIAHGEPGAGGYREHDILIITEDGNENITKYPYGPEFNVVG
>gi|99082332|ref|YP_614486.1| putative esterase/lipase/thioesterase [Ruegeria sp. TM1040]
MELDDAYANGAYIEGAADYPPRWAASAEDFRNSLQDRARLNLSYGEGDRHKFDLFLPEGTPVGLFVFVHG
GYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRISEITQQISQAVTAAAKEIDGPIVLAGHSAGGH
LVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWV
GGAERPAFLDQAIWLVEAWDADHVIAFEKHHFNVIEPLADPESDLVAVITA
>gi|99082333|ref|YP_614487.1| succinate semialdehyde dehydrogenase [Ruegeria sp. TM1040]
MLDATTDLKSLLADPTLLEDRAYINGAFVAGEGTFEVTNPARGDVIANVADVSRMQARDAIAAAQGAQKE
WAKWTGKERAGVLRKWFDLMMAHQEDLAVILTAEMGKPLAEARGEIAYGASFIEFFAEEAKRVYGETIPG
HQRDKRITVIKQPIGVAASITPWNFPNAMITRKAGPALAAGCAFVARPASETPLSATALAVLAERAGIPA
GVFNVIPASDASGIGKEFCENPIVRKLTFTGSTNVGRILLRQAADQVMKCSMELGGNAPFIVFDDADLDA
AVEGAIMCKFRNNGQTCVCANRIYVQSGIYDAFAAKLKEKVEAMKVGDGLEDGTHFGPLISEAAVKKVED
HIADAMDKGAEVILGGAPSELGGTFFEPTIVTGATPDMAFAQDETFGPLAPLFKFETEDEVIEMANDTIF
GLASYFYAKDLSRVYKVAEALEYGIVGINTGIISTELAPFGGVKQSGLGREGSHHGIEDYLEMKYLCMSV
>gi|99082334|ref|YP_614488.1| globin [Ruegeria sp. TM1040]
MGMAILRQIEVQLIKVSFNRVFAQKAALAEKFYHHLFLELPDAEVMFTRDFSHQTEMFARVLTTGMQSLG
RDREMMVLVDDLLQRHKHLGLTLDQMYTAQRALHLAFCEVMQAELTAAEVSAWDNAIGRLCRALAAGIEP
PAA
>gi|99082335|ref|YP_614489.1| hypothetical protein TM1040_2495 [Ruegeria sp. TM1040]
MSLRLVCLTSALALTAGFAQAEKAFNRIASFPVIKNMAEGADQSRESSPEIIDVTADGMTLVYTDSPLGA
LGMIDITDAANPVPKGNIALPGEPTSVAVVGTIAYVGVNTSESYTQPSGQVMAFDTATGAELASCDLGGQ
PDSLAKSKDGAFLSIAIENERDEDLNDGIIPQLPAGNLVMINTTQDGLNCASMKMVDLTGLAEIAGSDPE
PEYVSINNLDETVVTLQENNHMVVVSRDGEILSHFSAGAVDLDGIDATDERGALIFDESQKGRLREPDAV
TWIDADHFATANEGDYNGGSRGWTIFHKDGSVVYDSGVSFEHAIIQIGHYPDKRSDAKGVEPESVTFAEF
DGTPFVFVGAERASVVGVYDVTDPAKPVLTQLLPSGTGPEGYVTIPERGLLVSANEKDLLEDGGARAHVM
LFELQDGAATYPHLTSAGAKELIGWGAISGMVADEDGMIWAVNDSFYGFQPSIFKIDPSQTPARITDVIR
IHRANGDAAQKLDLEGITLDGEGGFYVASEGRTERAIPHAIYHVSAEGLIKTNKGEIAIPAELQSVEKRF
GFEGITKVGNTLWMAVQREWKDDPENHVKLVSYNLDTKEWGAVLYPKAAPATGWVGLSEIVAHGDHVYVI
ERDNQHDDRAVTKKIYRIALSDMVPAPLGSDLPVVTKEEVRDLLPDLKSTGGYVLDKVEGLAILADGTAW
VSTDNDGVDDSSGETMFWSFKVD
>gi|99082336|ref|YP_614490.1| hypothetical protein TM1040_2496 [Ruegeria sp. TM1040]
MTQSLPTPLKAAGLMVIAGACFALVNTALQSATMLHGASAPMVTFWQYLIALLFYIPWIWRNWTAVLSTR
QMITHVIRVVLAVAGVQLWTLGLAHVPIWQAIALILLSPFFVTIGAGLFLGEDVSLHRWGAVVVGIFGGM
VILAPWSDRFQIAALLPVAAAAFWAASSVVTKHLTRRDSTETVTIYLLLLLSPANALLSLGGGFALPEGT
IWLVIGAGLLTALAQHSLVRAYTLADAAFLQPFDHLKLVFNVGLGAVVFGFLPDGNMWLGTALIIVASAY
LLNREARAKPGSAAQNA
>gi|99082337|ref|YP_614491.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MTLAEMTSTSTRTQLIESACRLFAAHGYAGASISAIAQELGLSKQALLHHFGSKNALYALAVEQAASSVL
QLLFDAMEDDRPPEEQLETFFAAYQSALQADCASAQIVLRELLDQALPRDGGTSFATLFESLVATVQATE
RWEGKGVAGALGVVTQLLGAASLMGCTHDAWGRYYDASVLSTAKVQARAPFAEMVSGVLRG
>gi|99082338|ref|YP_614492.1| heat shock protein Hsp20 [Ruegeria sp. TM1040]
MRTFDFAPLHRATVGFDQIADLMDRVMSSDLQQPSYPPYNIEKTSDDAYRISIAVAGFSEDELNVEVKEH
ALVVSARKSEENGERTYLHRGIATRAFERRFTLADHVRVQGASHGDGMLHIDLVREVPEALKPRRIEISS
AAASKPKEISGSTVN
>gi|99082339|ref|YP_614493.1| peptidase S1 and S6, chymotrypsin/Hap [Ruegeria sp. TM1040]
MWSLPVLPIKKLIVSGVLCVLSAAAVAGTTLRGNDTRLKSLETTDAGRDWEAVGRLDRAGEGFCTGALIA
PDIVLTAAHCLYDRDTMAQIDPTSIEFLAGWRNGRASAYRAVKRAVLHPRYVYDGTLSAKRVRNDIALLQ
LQRPIRNTTVTPFETDARPREGARVGVVSYAQDRSEAPSLQEVCKVIARQDGVLVMSCDVDFGASGAPVF
SFDAGRPRIVSVVSAKARVEGSAVSLGASLAEELALLQSQLTGAHVGSRMPQGVGRVQVGEPRRSDIGAK
FISN
>gi|99082340|ref|YP_614494.1| protein of unknown function DUF224, cysteine-rich region [Ruegeria sp. TM1040]
MQTSFTDAQLQDPGTQRANEILRTCVHCGFCTATCPTYQVLGDELDSPRGRIYLIKDMLENERVPDEKTV
KHIDRCLSCLACMTTCPSGVHYMHLVDHARAYIDKHYKRPFGDRALRWILARILPYPTRFRLALLGAKIA
RPFRGLMPDPRLRAMLEMAPKVIPPVSRNDDPQSFAPEGRQVKRVALMTGCAQKALNTDINDATIRLLRR
LGCEVVVADGAGCCGALTHHMGREDESHATAAKNIRAWMAEKNGKGLDAIVINTSGCGTTVKDYGHMFRN
DALAQDAATVSNLAMDISELLMQLEMPEAEDKGLTVAYHAACSLQHGQQIKTHPKTLLKRAGFRVVEPAD
SHLCCGSAGTYNLLQPEISAQLKARKLRTLEAKNPDIISAGNIGCMMQIGSGTEIPIVHTVELLDWATGG
PQPPALTAERSRPSVPILR
>gi|99082341|ref|YP_614495.1| FAD linked oxidase-like [Ruegeria sp. TM1040]
MTAQSEAELADIIAGAHEPLCIQGGGTRGVSVPGEVLTTQGLSGVKLYEPGALTLVVGAGTPVAEIETLL
AAENQRLAFEPLDLRGLLGTGGAPTIGGAFATNASGPRRIQCGAARDFLLGVRFVDGRGEVLSNGGRVMK
NVTGYDLVKLMAGAHGTLGVLTEVSLKVLPCAETQTTLAVRGVDLPEGVAALSAALGSPYDVTGAAYDPT
ERVAYVRLEGFEGAVRYRAEALRALLAPFGEVEEVSGSEELWRDIRDLKALAGVEGDVWRLSVKPSDAVA
LIPALGATRCFCDWGGGLIWAVMPKGVDLRQRMTVAGHATLIRSEGRSPLARHHPEPAPLAAISAGLRQQ
FDPRGIFNPGLMG
>gi|99082342|ref|YP_614496.1| D-lactate dehydrogenase (cytochrome) [Ruegeria sp. TM1040]
MEMPPPNAAILSLKAELLQRLQQVLPKDALISDEAETRAYECDALTAYKCPPMLAVLPRSTQEVSDVLRI
CHQMNVPVVPRGAGTSLAGGALPTADCVILGVARMNEVLETDYDNRVIRVQTGRTNLSVSGAVEEEDFFY
APDPSSQLACAIAGNIAMNSGGAHCLKYGVTTNNLLGVTMVMMDGTVVEIGGAHLDAGGLDLLGVICGSE
GQLGVVTEATLRILRKPEGARPVLVAFDSNEVAGACVSDIIKAGVLPVAIEFMDRPCIEACEAFAKAGYP
MCEALLIIEVEGSEAEIDHQLKLITEIARRHNPVELREAGDSEEAARIWLGRKSAFGAMGQINDYMCLDG
TIPVSALPQVLRRIGEMSAEFGLKVANVFHAGDGNMHPLILFDANKPGDLELCEAFGAEILKLCVEVGGC
LTGEHGVGIEKRDLMLHQYALADIEAQLRVKDVFDPKWLLNPAKVFPLSTTQSRRNVAIAAQ
>gi|99082343|ref|YP_614497.1| hypothetical protein TM1040_2503 [Ruegeria sp. TM1040]
MIWIERLSQFSTWDFISLACYLLGWLWIGWRIENPSKSRPSVSILMADFRREWMKEMVTRSPRIFDSQVI
SSLRQATAFFASATMLALGAGLALIGNTDQLAGVAQDLALGQTPDFVWEIKIILVLAALTNAFLSFVWSH
RLFGYCSVLMAAVPNEPSDPRAYPRACQAAEINITAARSFNRGLRATYFSLAGLAWLVSAEALIIATVIT
LAVLYRREFISRSRRILMQSKPETTSPTEL
>gi|99082344|ref|YP_614498.1| hypothetical protein TM1040_2504 [Ruegeria sp. TM1040]
MLRYVLIPFLGLAGPFAAHAADPVIEQATAEPSGDTWRFSVTISHPDTGWEHYADGWRVLDMAGNELGLR
VLAHPHVNEQPFTRSLAGVRLPAGTTQVQIQARCNLDGWAATTTVIDLH
>gi|99082345|ref|YP_614499.1| hypothetical protein TM1040_2505 [Ruegeria sp. TM1040]
MRVHICAVGRLRAGPEKTLIDDYLQRFDRSGRALGLGPARVIEVEDKKNAGMGAEADLLRKALPKGALIC
TLDERGKVISSPDFAEKLAGWRDMGRQDLAFVIGGADGIDPSLRAEADFSISFGKMVWPHMMVRLMLAEQ
VYRSATILSGSPYHRV
>gi|99082346|ref|YP_614500.1| Iojap-related protein [Ruegeria sp. TM1040]
MAASATQFSSEDLLERILSSLDEDKAEDVTQIDLRGKTSIGDYMVVASGRSTRQVAAMSEKLTEKLKHEF
GVACKVEGKDAGDWVLIDTGDVIVHIFRPEVRDFYQIEKMWLPAGAVAS
>gi|99082347|ref|YP_614501.1| MscS mechanosensitive ion channel [Ruegeria sp. TM1040]
MEQDILPEEVQGTLDYLLELAQDYWEIALTPGWRQYQVLIVIALVLASILMRKLTQGRWEAWARSREGWP
KWRLRLAVQVLRRLSLIYFTVFSWVVFAVMQEVTWPSRSYLIGAVAKLATAWLVIALMARFIANPTLRKL
ASWLLWIYATLAVFNLVDDTARVLDSTAFDIGSFHLSLLVVLKALVLATALLTFARMGSALAERGLSGNE
DLSPSMKVLAGKAVQVLLYGIAFVIVIRSIGFDLTGLAVLSGAVGVGIGFGLQKVVSNLVSGIIILMDRS
IKPGDVISLGETFGWINALGARYVSVVTRDGKEYLIPNEDLITSQVVNWSHSNRYVRLDIHFGTSYDDDP
HLVRKVAIAATMTVDRVLDRDGMRPVCHIVGFGDSSVDYILRFWIADPTGGLTNIRGNVFLALWDAFKAE
GVSIPFPQRELRLLNNSLAVEMAEGRMGPKGDVEGEEQGNAERATQSRGAAPKLD
>gi|99082348|ref|YP_614502.1| isopropylmalate isomerase large subunit [Ruegeria sp. TM1040]
MSPKTLYDKIWDAHVAQEAEDGTCLLYIDRHLVHEVTSPQAFEGLRMAGRKVHAPEKTIAVPDHNVPTTA
GRENPDQMPEDSRIQVAALDTNAREFGVHYYPVTDIRQGIVHIVGPEQGWTLPGMTVVCGDSHTATHGAF
GALAHGIGTSEVEHVLATQTLIQKKSKNMKVEITGKLSPGVTAKDIVLTIIGETGTGGGTGYVIEYCGEA
IRDLSMEGRMTICNMAIEGGARAGLIAPDETTFEYVKGRPHAPKGAQWEAAVNWWKTLYSDDDAHWDKIV
TIRGEDIAPTVTWGTSPEDALPITATVPAPEDFTGGKVEAARRALDYMGLTPGMKLSDIEIDTVFIGSCT
NGRIEDLRAAADVVKGKKIKDGMRAMVVPGSGLVRAQAEEEGLAEIFKDAGFEWRLAGCSMCLAMNPDQL
SEGERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAVTGKLTDVREL
>gi|99082349|ref|YP_614503.1| isopropylmalate isomerase small subunit [Ruegeria sp. TM1040]
MEKFETFTGIAAPMPLVNIDTDMIIPKQFLKTIKRSGLGVHAFDEMRYDRQGNEVPDFVLNKPAYRESSI
LVAGDNFGCGSSREHAPWALADFGIKVVISTSFADIFFNNCFKNGMLPIVLPQEQVDLLMKDAEKGENAR
MTVDLEAQEITTSEGDVIKFDVDPFRKHCLINGLDDIGLTLEKADAIKAYEERAAQERPWV
>gi|99082350|ref|YP_614504.1| hypothetical protein TM1040_2510 [Ruegeria sp. TM1040]
MFLIGLYLARYIDWCAALSRRMRHWQILVIEMASFIGFVLCVKLMPVWVAAVYLVVIAIPVGIFAFSAFR
GRRQRADDVSALQVQNQKSRKLLERSRNR
>gi|99082351|ref|YP_614505.1| phenylalanyl-tRNA synthetase, alpha subunit [Ruegeria sp. TM1040]
MDDLKAKYLGQIAEATDENALEAVRLAAVGKKGEVALKMRELGKMTPEERQVAGPALNALKDEINAALAA
KKAALGDAALDERLRSEWLDVTLPTRPRRQGSIHPISQASEELTAIFAEMGFSAQEGPRVDTDWYNFDAL
NIPGHHPARAEMDTFYMHRAEGDDRPPHVLRTHTSPVQIRSMEKLGAPLRIICPGGVYRADYDQTHTPMF
HQVEGLALDENISMANLKWVLEEFVKSFFEVDEVELRFRASHFPFTEPSAEVDIRCSWDNGQLKIGEGDD
WLEILGSGMVHPKVIAAGGIDPEKYQGFAFGIGIDRLAMLKYGIPDLRAFFESDLRWLRHYGFSCLDVPT
LHGGLSR
>gi|99082352|ref|YP_614506.1| putative adenylate/guanylate cyclase [Ruegeria sp. TM1040]
MHDRITRKLTTILAADAEQFSAAMTTDEVGTYTELQSARDVFFKLIERHGGRVANTAGDGLIADFPSVVE
AVQCAIEVQQELAAKDSALSFRIGVNLGDVICDGEDLIGEGVNLAARLQTMAEPGGVLISQQVYDHVKNK
LSIGFEYLGDRRPRNLPEDVAVYRISLGAPRPSRASHPRSSAQVWSDPDPFADAPQRDYGLTDDAEDPEE
VPLRGLDRLVGRRLPLSKRSKTLVLVAAGLFVIDLASGRGIWAHWPLLVIAMVIGLRDGPRLLGRTEFRG
IPVKLCVIAAFLLLVNLFSWQGVMWSLWPIGGMAAYSLLKRRWSEAE
>gi|99082353|ref|YP_614507.1| 50S ribosomal protein L20 [Ruegeria sp. TM1040]
MSRVKGGTVTHARHKKVIKAAKGYYGRRKNTFKVARQAVDKANQYATRDRKNRKRNFRALWIQRINAAVR
SHDEALTYSRFINGLNLAGIEVDRKVLADLAVHEPEAFGAIVRQAQDALAA
>gi|99082354|ref|YP_614508.1| 50S ribosomal protein L35 [Ruegeria sp. TM1040]
MPKMKTKSSAKKRFKVTATGKVMAGQAGKRHGMIKRHKKFIRDARGTTTLSAPDAKIVKGFMPYDR
>gi|99082355|ref|YP_614509.1| hypothetical protein TM1040_2515 [Ruegeria sp. TM1040]
MDTDLLLVTGLILAWLGVPAFFAAYAHRRSPITAAAMLILGGGCIAWAVLNHPGGYSLADVPDVFFRVIG
RFL
>gi|99082356|ref|YP_614510.1| pyruvate kinase [Ruegeria sp. TM1040]
MKRTRNVKIVATLGPASETYETIRALHEAGADVFRLNMSHGSHDEIAVKHKIIRQVEEDLDSTIAILADL
QGPKLRVGVFANGAEELEEGANFRLDLDPAEGDLSRVCLPHPEIFQALEPGASLLVNDGKIRLKVEDCGE
DYANCVVTTGGTISNRKGVNVPDVILPLAALSEKDRADLEFVCELGVDWLALSFVQRAKDVFEARALADG
RAAILSKIEKPAAVDNFAEILDASDGIMVARGDLGVELPVSHVPPIQKRLVRKSRAAAKPVIVATQMLES
MIESPMPTRAEVSDVATAIYEGTDAIMLSAESAAGQYPIEAVQTMDKVATEVEQDPTYRDIIAASRSSKG
DTIADGIVAAAREIAEKTEIKAICCFTQSGTTALLTARERPYVPILALTPLAKTARRLCLTWGCNCVVTP
KVDRFKGAVVSAARAARSGGFASETDQVVVTAGVPFNVPGTTNILRIAPCDERLIYNTDPE
>gi|99082357|ref|YP_614511.1| zinc-binding alcohol dehydrogenase [Ruegeria sp. TM1040]
MTLELPQTMRAIEISEFGAPNVLKLVERPVPSAGYGQVVIRVAYAGVNRPDALQRAGAYAPPKGASDLPG
LEASGEIVALGEGVTGWNLGDRVCALLPGGGYADYVATPAAHCLPVPKGLSLKEAACLPETCFTVWSNVV
TRGGLRAGERFLVHGGSSGIGTTAIQLASALGARVYATAGSDDKCAACVGLGADVAINYRDEDFVEILRA
DGGAHLILDMVGGDYIPRNIKALADDGRLVHIAFLQGPKAELNFAQIMARRLTVTGSTLRPQSDLAKARI
ARDLLEAVWPLIEAGKLRPVMDSTFALAEAAIAHARMEGSTHIGKIVLEVAGAD
>gi|99082358|ref|YP_614512.1| RpsU-divergently transcribed [Ruegeria sp. TM1040]
MAENQGNFTDPSTEIQEKLLDAALMHVTFDGWTPATWDASVADSGVDSTLAEALFPRRAVDLAVAYHKRG
DAMMLARLKEADLGSLRFRDRVAAAVRYRLEAVEDKEAVRRGATLFALPQHAAEGAKLIWGTADAIWTAL
GDTSEDANWYTKRATLSGVYSSTVLFWLGDDSPEHQASWAFLDRRIDNVMQFESLKAQVNKNPLLKPLLA
GPNWLMSHVRAPERREDLPGRWQPRA
>gi|99082359|ref|YP_614513.1| 30S ribosomal protein S21 [Ruegeria sp. TM1040]
MQVSVRDNNVDQALRALKKKLQREGVFREMKLKQHFEKPSEKKAREKAEAIRRARKLARKKAQREGLL
>gi|99082360|ref|YP_614514.1| excinuclease ABC subunit C [Ruegeria sp. TM1040]
MAQNHMSETMNDISAESPDQPEPPRTGYGVIQAYLKTLDSSPGVYRMLDHESRVLYVGKARNLRARVSNY
TRPGHTQRIETMISQTSRMMFLTTRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPYIMVSKNHAFPQLK
KHRGARKGKASFFGPFASAGAVNRTLNQLQKAFLLRNCTDTMFENRTRPCLQYQIKRCSGPCVGKISQAD
YADSVRDAERFLAGRSTKIQEELGAEMQAASEAMEYERAAALRDRIKALTQVQSAQGINPRGVSEADIIG
LHLENGLACVQVFFIRANQNWGNQDFYPRVAEDMSAAEVMEAFIGQFYDNKDVPRQLILSDDIENADLMA
VALSEKARRKVEIVVPQRGEKTELVASAVRNARESLARRMSESATQAKLLRGIADAFGLEAPPNRIEVYD
NSHIQGTNAVGGMIVMGPEGFMKNAYRKFNIKDGEVIAGDDFGMMKAVLNRRFSRLLKEDPDRQKGMWPD
LLLIDGGAGQVSAVAEIMEEHGVQDIPMVGVAKGVDRDHGKEEFYRPGENAFALQRNDPVLYFIQRMRDE
AHRFAIGTHRAKRAKSLVANPLDDIPGVGARRKKALLTHFGSAKAVSRANLSDLKAVDGVSDALAETIYN
YFQVR
>gi|99082361|ref|YP_614515.1| short chain dehydrogenase [Ruegeria sp. TM1040]
MRALVTGAGKRLGRAMALALAEDGYDVAVHYASSEQDANDVVAQIEARGQRAVALRADLLRDTETEALLP
QAAEALGGDITCLINNASIFEPDDLASVTRDSWDRHMQSNLRAPVLLLQALAAQSLPDLSDEAGEPRAAA
VAINMVDQRVNKLTPDFLSYTLAKSALWTLTQTAAQALAPRIRVNAIGPGPTLQGPRQSVADFAAQRRAT
PLQRGAGEQDITSALRYLVGAPAITGQLICVDGGQHLAWQTPDALLPE
>gi|99082362|ref|YP_614516.1| K+-dependent Na+/Ca+ exchanger related-protein [Ruegeria sp. TM1040]
MMPWLLSVLGLVILLLAGDALVRGAVNLSLRVGIPALIVSLTIVAFGTSAPELLIAIQAVHENADGIALG
NVVGSNTANILLVLGLPALMRALHTSECNTRKNYIFMIAASVLFIALAFVGTFTWVSGVVLLLALFGVLF
TAFREAQAHRAAGEDDELEEIDEADPDMPYWRIGIYLVLGLIGLPLGAELLVENATIIARMYGLSETVIG
LTLVALGTSLPELATTLVAALRRQADVALGNVIGSNMFNLLAIIGLTTFVGPITVDPAFLRFDLWVMLAS
SLLIIPFVFFRQDITRIWGIILTGLYVVYVWSLL
>gi|99082363|ref|YP_614517.1| peptidase S49 [Ruegeria sp. TM1040]
MSFRLPFTKRPPQVAVVRLSGAIGMAGRGSLNDSTLAPVLERAFTKGKPKAVALEINSPGGSPVQSALIG
ARIRRLAEERDVPVIAFVEDVAASGGYWLAAAADEIYADASSVVGSIGVISAGFGAHVFLARQGLERRVH
TAGESKSMLDPFRPENEEDVARLKGLLNDIHANFIDHVTDRRGEKLSTEEKLFTGEIWLARRAKELGLID
GIGHLRPVLQERFGDKVRLRRHGIKKPFLSRFGLSMAEDALAAVEERAQFARFGL
>gi|99082364|ref|YP_614518.1| ABC-2 type transporter [Ruegeria sp. TM1040]
MNWTAIAAIYRFEMARFFRTLAQSFISPVLSTSLYFVVFGAAIGSRIDEVEGVSYGAFIVPGLIMLSVIT
QGISNASFGIYFPKFIGTIYELLSAPVNFLEIVLGYVGAAATKALFIGVVILGTAYLFVDITIAHPFAMI
LFLVLTCISFALLGFIIGIWAKNFEQLQLVPLLIITPLIFLGGSFYSISMLPPVWQTITLFNPVVYLISG
FRWSFFGVADVPIGLSLLAIALFTGLCLLVIGWIFRSGWRLRS
>gi|99082365|ref|YP_614519.1| ABC transporter related [Ruegeria sp. TM1040]
MSTILSITDLRKSYAGGFEALKGVNLDIEEGEILALLGPNGAGKTTLISTICGISTASSGSVTVGGHCIE
RAYRAAREMIGLVPQEINLEPFETVMNSVRFSRGLFGKPKNDALIEEILKKLSLWDKRKSQIKELSGGMK
RRVLIAKALSHEPRVLFLDEPTAGVDVELRKDMWDVVRELRESGVTIILTTHYIEEAEAMADRVAVIAAG
EILLVEEKSDLMARMGKKELQVILTEPLSTVPQALAQHELRLGEDGRSLIYTYDVKAERTGITSLLNDVA
AAGLVLADVSTRQSSLEDIFVGLVSGEDA
>gi|99082366|ref|YP_614520.1| carbon monoxide dehydrogenase subunit G [Ruegeria sp. TM1040]
MQMSDQKEIAADPASVYAALLSPEVLKACVPGAQDVSGSPEEGFEAKVTQKVGPVKATFTGHVTLSDMVP
GEKLTISGEGKGGAAGFAKGGAVVTLTPSETGTLLSYEVEAKVGGKLAQLGSRIIDGFAKKMADQFFTNL
QDALAPAPLDAADAEEDAEAGGAKPKGWFRKLLGGASEENT
>gi|99082367|ref|YP_614521.1| L-carnitine dehydratase/bile acid-inducible protein F [Ruegeria sp. TM1040]
MLEGIRIIEIEALGPAPFAAMMLSDLGAEVICIHRKGAAATSIMPERSILDRGKKSIALDLKDPSDLKIA
QDLIATADGLIEGFRPGVMERLGLGPQAMQSNNPRLVYGRLTGWGQDSPRANEAGHDLNYIALSGALWPA
SNAGNAPMPPATLVGDIGGGALYLVAGLLAGLLRAAQTGMGTVVDAAIYDGSAHMMTLLMALRQAGSFGE
TRGENLLDGPHWSRTYRCRCGGYIAVQCLEPKFYEIFLERLNLAQDTDFQQQFDKASWPALTSRLARLFA
TQDREHWSALFATSDACVTKVLSPSEAAKDPMNDRQTWHTTGGILQAAPAPRFDGQTRAPKKPPNRDEHR
AEILAMLRADVSPSSNEKYPGGV
>gi|99082368|ref|YP_614522.1| uroporphyrinogen decarboxylase [Ruegeria sp. TM1040]
MGQQKTILRALAGETQAVPPIWMMRQAGRYLPEYRATRAQAGDFLSLCYNPELAAEVTLQPIRRYGFDAA
ILFADILLVPQALGADLWFVTGEGPRLSTITTDADFAKLGPASDVHETLSPIYETVRILSKELPSETTLI
GFAGAPWTVATYMIAGRGTPDQGPAHALMQENTPLFEALLARITEATISYLSAQIEAGAEVVKIFDSWAG
SLKGEAFDKYALEPARQITAALKARHPHVPVIGFPREAGEKYIGFHAATGVDCVALDNSVDPEWAAEHVQ
VAGCVQGNLASRHMVSGGEALVQDTRRIVKAFSKGPHIFNLGHGITPDADPDNVQRMIDTVREGA
>gi|99082369|ref|YP_614523.1| porphobilinogen deaminase [Ruegeria sp. TM1040]
MTLTLPSPASPLKIGTRGSPLALAQAYETRDRLARAFELEPTAFDIVVIKTTGDNRAMIDADRPLKEIGN
KGLFTKEIEEALLSGGIDIAVHSMKDMPTLQPEGLTLDCYLPREDVRDAFVSPGIHSIADLPEGAVVGTS
SLRRRAQLLHRRPDLQVVEFRGNVQTRLQKLENGVASATFLAMAGLRRLDMAEAVPATPISVDDMLPAVA
QGAIGIERRSSDITTAAMLEAIHHAETSLRLAAERAFLAALDGSCETPIAALADLSGGTIQLRGQILRPD
GSEALSDEQDGAIEDGAELGRQMGETLRARAGAGFFAH
>gi|99082370|ref|YP_614524.1| glycoside hydrolase family protein [Ruegeria sp. TM1040]
MIFHRLLSMGLLAALAACGSTTQDAVPPPPLEAAAEQVVNPAFARAYAALSTYPKYGDNDPHDWEGGTPW
AYPIHGIDVARYQGAIDWRQVGAAGVSFAWIKATEGGDLLDPEFKSNWRGARRAGVRRGAYHFYYFCRSP
EDQARWFIRNVPKEAGSLPPVLDIEWNHTSPSCKRRPSGAEARHEAERFIKKITQHYGRRPVVYTTVDFY
RDTNIGRLRGVDFWLRSVAGHPEQVYPGASWAFWQYTGTGSVPGITGDVDLNVFAGSAEGWLKWLGYQKY
VESEQVPSRPEE
>gi|99082371|ref|YP_614525.1| coproporphyrinogen III oxidase [Ruegeria sp. TM1040]
MAQNTAEMRDEKARAAAWFRELRDQIVAAFEGLEDSHHEGPFTEMGAGRFDVSDTKRTAEDGSDAGGGLM
SVMRGGRVFEKVGVNISEVYGTLGARAQQAMAARKGLPGMKEDPRFWASGISLVAHMRNPHVPAVHMNTR
MFWTPHGWWFGGGSDLNPCIEYDEDTAHFHEVQQTHLDPHGADLYPRLKAWADEYFFIPHRGRARGVGGI
FLDDHNTGDWAQDFALIQDIGRAFLPAFLPLVERRRGHACSADDKEAQLIHRGLYAEYNLVYDRGTKFGL
ETGHDANAVLMSLPPLAKWI
>gi|99082372|ref|YP_614526.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MSFSISGKTAIVTGAANGIGLAIGRQFAREGANVMFVDHDEPTLLQELGGDVEDSNIRHFAGDLRERLTI
ANLLSATIDAFDQVDILVNGARKVVPSEPLNPDDESVEFLLKQNLMSTLRLSQHVAKRMIRQAEERDDEG
PNGAIINLSSIAARRTHPDLMGYSVASAALDQMTRSLAVSLAPHRIRVNSIAFGSVMSASMQATLKDNRS
LRQDIEEHTPLNRIAPPTELTETAQFLASEASGFMTGQVLTLDGGRTLLDPVTAPVH
>gi|99082373|ref|YP_614527.1| methyltransferase small [Ruegeria sp. TM1040]
MSQRLSLVVQSGDFRVPDEGRIAVFHPREGHDLSDLPDARLEIIQPLKPEYDYWAGRGLTSVAEVAEDAT
YDAAVVFIPRSKPLARQLVAQAVAATQGPVLVDGAKTDGIDSLLKELNKRTRPSHAISKAHGKAFCIEGG
IDLSDWVPGPSEVDGGFVTAPGVFSADAIDPASALLARALPKKLGKEVADLGAGWGYLSAEILRRSNLET
LHLVEADHVALTCAQTNVTDAHAEFHWADARSWGQKGSLDAVVMNPPFHSGRAAEPSLGQAFIANAARLL
KPAGQLWMVANRHLPYEALLGECFVSFEEAAGDNRFKILHGVRPRRKG
>gi|99082374|ref|YP_614528.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp. TM1040]
MLMQPLMMSDNPDDESDLGLLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLNHAQAFEIMLT
VHKKGLAVVGVFSHEVAETKVAQVMDYARRHQHPLQCTMEKDD
>gi|99082375|ref|YP_614529.1| haloacid dehalogenase-like hydrolase [Ruegeria sp. TM1040]
MSRTLTTIGFDADDTLWHNERFFRVTQDRFAELLMDHTSEDMGPEALDRKLLDAEKRNLGAYGYGVKGFT
LSMIETAIEVTEGRVPAAVIKELLEAGQMMLSFPIELLPHAQTAVETLAKEHRVILITKGDLLDQERKLA
QSGLGELFDAVEVVSEKTPQVYIDIFERHGDGAARALMAGNSMRSDVVPVVRAGGHGVYVPHGAIWEVEA
AEPPTESPRYHEIPDLGALPELVERLA
>gi|99082376|ref|YP_614530.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
MVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEITLDTQITVSRNAEAEPPSELGLRRGQK
IALRYLIRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKALGMTRTTFKNAHGLTANGHMSTARDMT
ILGRHMLYDYPEYYNLFSRTSTNAGTKVVYNTNRRFLAAYRGADGIKTGYTRAAGFNLVSSAKRGDERII
ATVFGGKSTAARNAKIAELLDLGFRRAPAYAKLQKPPMPPYLGNSGVRLAEDDTHGMAGKTIRVSGVISE
TLRPRPRPLPEPAPETLLAEAETEVETGTVAAPEEVQLAALDSDALKSGINDALLEVTEVSDVSAIQPQA
RPEALQAEVEGEQALQAEIRTAVARAVEAPTQPRYTGPRPQARPAKFNTEVASLEEPVVVTRLSTSGGRY
WGINVGRYTNRFQAEKVLLRTALAEMETLEGSLRKVVQSPRGFDANFLGMTKESAELACKRLNSRNVTCE
TLGPSS
>gi|99082377|ref|YP_614531.1| cytochrome oxidase maturation protein, cbb3-type [Ruegeria sp. TM1040]
MTVLSYLIPISLILGGAGLIGFIYTVRSEQYDDPEGDARRILSDEWDDHPKP
>gi|99082378|ref|YP_614532.1| heavy metal translocating P-type ATPase [Ruegeria sp. TM1040]
MTAQMHHQTAVCPGCAAAPTEAIAQAPTEARLAISLPTIHCQACISAVERGLSQVPGVRSARVNLTLKRA
LVEAEPEMRAADLVPICASLGYEAHELDLAALAATETDRAGRELLLRLAVAGFASMNVMLLSISVWSGAS
DATRDMFHWISAAITFPAIVYSGHPFFKNAWQALRARRLNMDVPIVLALLLALLTSLWETTLSGEHAYFD
AALTLTFFLLAGRYLDHRTRAAARSAAEELAALEVPRAWRLDKQGQEVEVSVADLTIGDLIRVRPGGRMP
VDGEITEGRSELDRSLLTGETLPVLAEPGGLVSAGEVNLTGPLTIRATAVGAETSLHRMADLVAIAESGR
SRYTSLADSAAKLYAPGVHILSALAFVGWYLYTCDLRTALNIAAAVLIITCPCALGLAVPAVTTAASGRL
FRAGLLVKHATALERLAEVDTVVFDKTGTLTEGAPEVVNLDTLSPKERSVALALASGSSHPLAIALSRAA
RDAGAEPAVLEDLREVPGYGTEARLNGQPVRLGRAAWVGARGTQEQTATWLDLGEGAPVAICFKDALRAG
AEEVVRALQGAGKDVLLISGDTTAAVEDLAKRLGIQSWVAEALPEDKAARIAELTQTGRKVLMVGDGLND
TAALAGAHVSISPASALDAARVASDIVLLGKDLAPIAEACGVAERATRRIRENFQIATLYNVIAVPLAIA
GLATPLIAALAMSTSSITVSLNALRLR
>gi|99082379|ref|YP_614533.1| FixH [Ruegeria sp. TM1040]
MHSETTKAPRQFTGKHMLAVCVGAFGIIISVNLYMAYSAVSTFPGVEVKNSYVASQQFDTRRAAQEALGW
SVYASAIGNEVKLEISDRDGQPVEVASLTATLGRATHVRDDQKPQFRFDGSAYVAPAELAPGNWNIRMIA
RAEDGTEFTQRVILHVKD
>gi|99082380|ref|YP_614534.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
MSDSSQTPSLYAAREPIFPRRVSGKFRTLKWVIMAVTLGIYYLLPWIRWDRGPELPDQAVLLDLAGRRFY
FFWIEIWPHEFYFVAGLLIMAGLGLFLFTSALGRVWCGYACPQTVWTDLFILVERWIEGDRNARLRLHRQ
KKWDFKKVRLRVTKWVAWLLIGLATGGAWVFYFADAPTLLQDLVTGQAHPVAYTTMAILTFTTFFFGGFA
REQICIYACPWPRIQAAMMDEDTLTVGYRDWRGEPRGKHRKSAEAEQLGDCIDCMACVNVCPMGIDIRDG
QQMECITCALCIDACDDIMAKVGKPRGLIDYMALSDETQERAGKPPRPVWKHILRPRTIMYTTLWGGVGL
ALVFALFIRADINMTVAPVRNPTYVTLSDGTIRNTYDVRLSNKNGEARIFEMSIVGDPTLSVTLEGEEGT
KVEVPADSAELQRVYVSAPRDSAPAEAENTGLRLWVEDLTSGERAYRDTTFNGRGN
>gi|99082381|ref|YP_614535.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MNWRDMPPLSALRAFAAFAETGNLQQAGEQLNVSHAAISQQLRHLETHMGVPLLDRSGRSLRLTSEGEQL
AQALALGFGAIRSAVQDLTSRGAGQPLHVTCTPMFATHWLMPRLAGFRQAYPDVDLVIDPTGEVVRLAPG
GIDIALRYGTGTWPGLEAEMLLASPMVVVAAPGLLDKRAVTTPEDLLDLPWLEEIGTNEASVWLRSRGVQ
DGVKAGRVVLPGNLLMEALRAGQGVAVSVREFVALDVAAGRLTELFCEEKGRGYHIVHRPCLLRPGARHF
VNWLRRERDSTPLI
>gi|99082382|ref|YP_614536.1| cytochrome c oxidase, cbb3-type, subunit III [Ruegeria sp. TM1040]
MSETGNKKTVKIHEGDPNTTGHEWDGIMEFDNPMPRWWLWVFYATIIWGIGYTIAYPAWPMVSAATSGIT
GWSSRGQVEAEIAAVDEANAPINAQLEALELAAIPGHPELEGYAVSAGAAVFKTWCAQCHGSGAAGAKGY
PNLLDDDWLWGGTMEDIHATVSYGIRNEESDDARYSAMPAFGRDELLQKEEVSQVVNYVMSLSDTPKDAS
EVAAGAVVFEENCASCHGADASGDIYQGAPNLKDAIWLYGGDYDTLYETVWNSRFGVMPNWDSRLSEAEI
RAVSAYVHQLGGGE
>gi|99082383|ref|YP_614537.1| Cbb3-type cytochrome oxidase component [Ruegeria sp. TM1040]
METYSLLREFADSWMLLFLFLFFIGVVIWAFRPGSTKTYEDTANIPFRNADKPASERAAQPEAQQ
>gi|99082384|ref|YP_614538.1| cytochrome c oxidase, cbb3-type, subunit II [Ruegeria sp. TM1040]
MAILDKHKILETNATLLLICSFLVVTIGGLVQITPLFYLENTIEEVEGMRPYTPLELAGREIYIREGCYV
CHSQMIRPMRDEVERYGHYSLAAESMYDHPHQWGSKRTGPDLARVGGRYSDEWHVDHLRDPQAVVPESVM
PKYDFLERTRIDGKYIGELMATNAIVGVPYTEAMIEEARRDFRAQADPDSDYDGLLERYGESVNVRNFDG
QPGVSEADALIAYLQMLGTLVDFSTFTPDASR
>gi|99082385|ref|YP_614539.1| cytochrome c oxidase, cbb3-type, subunit I [Ruegeria sp. TM1040]
MSNYLKLIVLGVLTVFFMIAAGYARDLAYQVHAVILMLVAGGLFLWTLRETDEPVPAPVTGEYLDGVVRA
GVIATAFWGVAGFLVGTFIAFQLAFPVLNFDWSEGFANFGRLRPLHTSAVIFAFGGNALIATSFYIVQRT
SAARLWGGNLAWFVFWGYQLFIVLAATGYLLGGTQSKEYAEPEWYIDLWLTVVWVAYLAVFLGTIIRRKE
RHIYVANWFFLAFIVTVAMLHLVNNLTIPVSIWGSKSVIVWPGVQDAMVQWWYGHNAVGFFLTAGFLGMM
YYFIPKQADRPVYSYKLSIIHFWALIFIYIWAGPHHLHYTALPDWASTLGMVFSIVLWMPSWGGMINGLM
TLSGAWDKLRTDPVLRMLVISVGFYGMSTFEGPMMSIRAVNSLSHYTDWTIGHVHSGALGWNGMITFGAL
YYLTPVLWKRERLYSLSLVSWHFWLATIGIVLYAASMWVTGIMEGLMWREVDANGFLVWSFADTVAAKLP
MYVMRGLGGVLFLTGSLVMCYNLWMTVRRAPAKEASLSVAVPAE
>gi|99082386|ref|YP_614540.1| hypothetical protein TM1040_2546 [Ruegeria sp. TM1040]
MTYKTILTVRSAPDGSTTALDQAEAMVRRANGHLDVLCLGVDRTRVGYYDGGANAIAINTLLDRAREEVQ
ATEAHTEQHLAGSDVPRAISTAIAPFGDISRITSHHARFSDLVVMDLPYSKGQGPEVEPIVEAALFDTRT
PVLVMPEGTELAASPKTVLVAWDESIEALTAVRKALPLLQAADLVRITIIDPPKHGIERSDPGGMLCQML
ARHGVACEIDVLSKTLPRISDVLCRHATDTEAELIVMGAYGHSRFRESILGGATRNMLEHAKVPVLMAH
>gi|99082387|ref|YP_614541.1| Crp/FNR family transcriptional regulator [Ruegeria sp. TM1040]
MSLAQFQSVECADCPIRHRAVCARCDADELEALDAIKFYRSYEAGQTVVWSGDQMNFVGSVVSGIATLTQ
TMEDGRTQMVGLLLPSDFVGRPGREGSAYDVVATTDVIMCCFRKKPFEDLMVRTPHIAHRLLEMTLDELD
AAREWMLVLGRKTAREKIASLLSIIARRDASLAVDPSNGAVSFDLKLTREAMADYLGLTLETVSRQISAL
KKAGVIQLEGKRHVTVPDMHRLIEEAGDDSDGGVLG
>gi|99082388|ref|YP_614542.1| coproporphyrinogen III oxidase [Ruegeria sp. TM1040]
MTQESQLARLGLFDAKVPRYTSYPTAPHFNNDVSAARFASWIGSIKPGAEISLYVHVPFCRRLCWFCACR
TQGTQSESPVRAYIEVLKQELALLARALPEGVRLARLHWGGGTPTLLSAEMISDLAEAIFAVTPMAKGGE
FSVEIDPNEIDDARLDALAAAGMNRASIGVQDFDPQIQETIGRIQPFDLTRDAVDMIRARGITSLNADIL
FGLPHQNRMRMTESVQKLLSLSPDRVALYGYAHVPWMARRQNMIPTDSLPSPQTRLQLFETAQRLFQWDG
YREIGIDHFATPHDGLAVAARTGRLRRNFQGYTDDRADVLIGLGASSISRFPQGYAQNAPSTSAYTKAIR
DGQFSTARGHVFSGEDLLRGRMIEALMCDFEIATDDIRAQFDITQDALERMYREASVAFPEMLDVTPSGL
RVRPEGKPLTRMVARHFDAYDLSKAGHSSAI
>gi|99082389|ref|YP_614543.1| ABC transporter related [Ruegeria sp. TM1040]
MTQAPILQVKDLRVAFRQDGQRVEAVKGVSFALSRGETVALVGESGSGKSVSALSTVQLLGDSAEVSGSV
NYDGQEMIGADERTLRRVRGNDISFIFQEPMTSLNPLHTIEKQLGEALALHQGVMGEDARARVLDLLNKV
GIRDAETRLGAYPHQLSGGQRQRVMIAMALANKPDVLIADEPTTALDVTIQAQILDLLADLKQSEGMGLL
FITHDLSIVRRIADRVCVMKSGEIVEEGPTAELFANPQHPYTQKLLAAEPSGRPAPIPEGATEFVSAKDL
KVWFPIQRGLLKRMVGHVKAVNPMSLSVRAGETLGIVGESGSGKTTMALAIMRLIASEGEVRFQDQDLRQ
WSTRDLRRLRKDMQIVFQDPFGSLSPRMTCQQIIAEGLAIHEVDQHRKPRDLVADVMQEVGLDPATMDRY
PHEFSGGQRQRIAIARAMVLRPKLVVLDEPTSALDMTVQVQIVNLLRDLQARYGLAYLFISHDLNVVRAM
SHDILVMKAGDVIEQGPAEEVFANPKEEYTRHLLSAVTGA
>gi|99082390|ref|YP_614544.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MALSPLNQRRWNNFKRNRRALWSLRIFLVLFGLSLFADVLANDKPILVNYRGDYYTPVWNFYPETTFGGD
FQTEAVYRDPEVKCLIASGGSLDCFDDPEGIMAAIDSGTYAAEDFVEGWSLWPPIPYRFDTPVDRAGAAP
LPPNGQNWLGTDDTKRDVLARVIYGFRLSILFTLIVTLAASLIGIVAGAVQGFFGGWVDLIFQRVIEIWS
ATPSLYVIIIMFAILGRSFWLLVFLMILFSWTALVGVVRAEFLRARNLEYVRAAKALGVGNVTIMFRHML
PNAMVATLTMLPFIVTGTIGTLASLDFLGFGLPSSAPSLGEMTLQAKQNLQAPWLAFTAFFTFAIMLSLL
VFIFEGVRDAFDPRKTFS
>gi|99082391|ref|YP_614545.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MLNYILRRLLLVIPTLIGIMVVNFALVQFVPGGPVEQMIARLEGGGDVFGGFAGAANDAGAETVGQAESQ
YAGARGLPPEFIEELEREFGFDKPPLERFLNMMWNYVRLDFGESYFRNIGVIDLVLEKMPVSISLGLWST
LIAYLISIPLGVKKALRDGSSFDSWTSGVIIAAYAIPGFLFAILLLVLLAGGSYWQIFPLRGLTSENWEE
LSLLGKIGDYFWHITLPVVASTISAFATLTLLTKNSFLDEIKKQYVMTARAKGLTENRVLYGHVFRNAML
IVIAGFPGVFISIFFTGSLIIETIFSLDGLGRLGFEAAVARDYPIVFGTLFIFGLMGLVVGILSDIMYVL
VDPRIDFEKREG
>gi|99082392|ref|YP_614546.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MSTAALMTSALAVKSTESEAITVSHGYSFYGDLDYPADFEHFDYVNPDAPKGGELAIPFIGTLDSMNPYS
GKGRAHAFSVYPYESLLSDAAPADKYGQSYCLLCETVEYPEDKSWVIFRMRPEARFSDGTPVTAHDIAFS
HNLLLDQGLKSYADFIRRLIPKVEVIDDHTIKFYFADGVSRRSLIEQVGGVPAWSKKWFDETGQKLNENW
IEGPPGSGPYVIEEIDLSRRIVLKRNPDYWGKDLPVNQGRHNFDSLRVEIFADDTAAFEAFKAGEYTFRA
EGDSKKWASGYDFPKVDSGAVKLEELPNGAPPASSGIVFNLASPELQDRRVREALALAFNFEWSNESLLY
GLFDRRASFTQNSPLMAKGVPEGAERAFLQSLGDLVPDEMLTEEVYIPPTSDPSRLFDRRNARKAAALLD
AAGYTVGDGGMRMSPDGSAFELDFLFSSSSSPTTRGVMENFVDNLENLGVQVNFEVVDTAQYTSRERDRD
YDLVVDSYTTFLGTGTGLEQRFGSEAAAFSLFNPAGLASPLVDEIITRSLHAETREEETTVMTALDRALR
HEFIMIPLWYNPNHWAAYYDQYEHPAEIPPYSLGYLDFWWYNEDKAKALRDAGALR
>gi|99082393|ref|YP_614547.1| cytochrome c, class I [Ruegeria sp. TM1040]
MFDTMTLTKATAGFCGAFLVFLLGKWVAEELYHVEAHGEASYVIEVADAGGASDEPEVDFATLMASADVD
KGAKVFRKCSACHKLDGTDATGPHLDGVVGRDIAASAGFGYSGALTALEGAWTPEALNEFLLKPSDYASG
TTMSFAGLKKVEDRVNLIAYLQTTAN
>gi|99082394|ref|YP_614548.1| prephenate dehydratase [Ruegeria sp. TM1040]
MTQKIAIQGELGSYSHEACRNKRPDMEVLPCRGFEDAINAVRSGEAELAMLPVENTTYGRVADIHRLLPH
SGLKIIDEAFVRVHINLLGVPGATLDDIKEAHSHLVLLPQCATFLRQHQIQGRVSPDNARAAREVAERGE
ITHAALASELAGEIYGLNVLARHIEDQGNNTTRFLTMAREADTSRRGDNGMITSFVFQVRNIPAALYKAM
GGFATNGVNMTKLESYMVNGSFTATQFYADIDGHPEDENVRLAMDELSYFTTDVEILGVYPADRKR
>gi|99082395|ref|YP_614549.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MVEKSLIDLSWDDFDEHRSPRPDQNQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLISSTTASRAHAH
AKFAFTPIGIATDHAVHVPEGYKSQVLVRWGDALWSDAEGAYSADTGISLAMSDKVFGENTDGMELFEVD
GREILVVNSEYVNPKINLPASSEGVPQDADEVQLLKNLQGVTVMEIARGATGYQVVKDSPYNRRITHETE
MTLAGPLAGDELVKTDADPSGRRVKGTMNNCGSGKTLWGTYLTCEENFNGYFGATGEMPEGEGYIRYGIG
GEGRYAYEKYDDRYDISKEPKEPHRHGFVTEINPSDATSVPVKRTALGRFKHENAEMVHAADGRIVVYMG
DDERGEYLYKYVSTNTWTEGAPTEGLLDDGQLYAAKFNDDQTGEWLALTPEATGMSEAEILCFTRMAASA
VGATTMDRPEWVACNPLKAEGYCALTNNKNRGVKPNAGGDDASVNGPNPRETNKYGQIVRWAPSEDNHAA
EGFTWDLYVMAGNPTVYDNAYAGSANVNAGNMFNSPDGMAFSSDGMLWIQTDGDDDNEGDFAGQGNNQML
VGDPESGEIARFMTVPNGAEVTGLCWSLDKTVAFVGVQHPGGAWPDGAGKPRSSIVAVWREDGAMIG
>gi|99082396|ref|YP_614550.1| DNA repair protein RecO [Ruegeria sp. TM1040]
MDWRDQGILLTVRRHGESSALIEVFTEDHGLHAGLVRGGASRKMAPHLQPGAQLDLTWSARLEDHLGTYK
AEPLRSRAGMALSGRLALAGLNAVCALLAFALPDRAPYPALYHRSSALLDLLDSEDLWPLAYLRWELSLL
EDLGYGLDLSACAATGVTQDLRYVSPKTGRAVSGAAAGEWADRLLPLPPVMRGEGAAEDIEILTALRTTG
FFLESKLAPALGNRPIPEARGRFLDALARRV
>gi|99082397|ref|YP_614551.1| hypothetical protein TM1040_2557 [Ruegeria sp. TM1040]
MSRLTARFWVDAYLARLRFQDIPAFVTAHGDDTAGAVLVKLNTLDGQARAYQRSFDLMTGDRKWVELVAG
ADGDVEASIAKQRQFDSDLWVIEVEDRQGRHLLDEPGLD
>gi|99082398|ref|YP_614552.1| GTP-binding protein Era [Ruegeria sp. TM1040]
MTTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLVFVDTPGLFQPRRRL
DRAMVAAAWGGAADADVIVMLIEAHRGVTEGVERILENLGEVAEGRRVALAINKIDKVQSDVLLGLTKDL
NDRFPFAETFMISAEKGYGTEDLRQWLAAEVPEGPWLYPEDQIADLPLRMIAAEMTREKLTLRLHQELPY
QLTVETEKWEERKDGSARIDQVVYVVRDGHKGIVLGKRGETIKAVGQAARAELEEFLDRKIHLFLQVKVR
PNWLEESERYSEMGLEFKDGN
>gi|99082399|ref|YP_614553.1| RNAse III [Ruegeria sp. TM1040]
MPSNCALKLFKGPHVKLSRDILAFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVM
ATALLEHDKDATEGQLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAVIAA
VYRDAGFEAAQSVILRLWGKRVGTVEEDARDPKTALQEFVQARRQPPPAYVLVARKGPDHEPIFTIAARL
EDGTEEQATAGSKRLAEQAAAKALLAKLEQQT
>gi|99082400|ref|YP_614554.1| signal peptidase I [Ruegeria sp. TM1040]
MASKTKSGNSIVETIKTIVYALLIAGVFRTLFFQPFWIPSGSMKETLLIGDFLFVNKMVYGYSYASCPNI
RLNSIGINIDAKDICGFVDGDNTRIFGGEPERGDVVVFRHPVNGTDYIKRLVGLPGDKLQMRDGVLHING
AAVGLMDDGEFEEAMERQGPQGRFPRCENDPVGQGGVCKKSRQIETLPGGTSHAIINIGNQASDHTKVYH
VPDGHFFFMGDNRDNSTDSRVSKAVGGVGYVPFENLIGRADRIMFSSAGRSMLFFWTWRGDRFFKGIT
>gi|99082401|ref|YP_614555.1| 4'-phosphopantetheinyl transferase [Ruegeria sp. TM1040]
MILGIGTDLANIERIQGVLDRFGDRFRNRVFTDVEQAKSERRLDVAGTYAKRWAAKEACSKALGTGLRMG
IAWKDMSVSNLSTGQPVMHVTGWAKARLDELTPPGHEAVIHVTLTDDHPWAQAVVMIEARPILPDVQTAQ
TT
>gi|99082402|ref|YP_614556.1| hypothetical protein TM1040_2562 [Ruegeria sp. TM1040]
MKLGRFAIVYLGIMVALMVLILLVQAIFRFDISNAGMAIIPAMGAAMVEGQAFAKAQERMPEPAEMWGFA
RRAGIVILGLTLLSTAAFSIAVPEIKHILSQPQGTMFLLVAVLFQAMISFLLVRFFLATGAKSMLRAQKR
P
>gi|99082403|ref|YP_614557.1| pyridoxine 5'-phosphate synthase [Ruegeria sp. TM1040]
MSTNTLRLGVNIDHVATVRNARGGAYPDPIRAAKLAEEAGADGITAHLREDRRHIVDADIDGLMAALTVP
LNFEMAATEEMQKIALRHKPHAVCIVPEKREERTTEGGLDVVRDESRLAACIAPLREAGSRVSIFIAADQ
KQIEAAHRIGAEVIELHTGAYCDHHAEGDFAARDAELAALGEMATYAHSLGLEVHAGHGLTYETVAPIAA
FPEVRELNIGHFLIGEAIFRGLSPAIGEMRRLMDAARSGADA
>gi|99082404|ref|YP_614558.1| hypothetical protein TM1040_2564 [Ruegeria sp. TM1040]
MVFRRRDRRPPLRAAAEFLWPRGGWGRAFLYVKHRIRRLPDHPERIARGIWAGLFTTFTPFYGVHFIVAA
TIARVMNGNMLAALSATFFGNPLTYVPIGVISLQTGHWLLGSQPVAEVDDTLADKFLAAGWDLWYNVYAV
ATGTPVDWTGLKVFYDEVFYPYMIGGIIPGIIVATVGYMLSVPVIRTYQQRRRRKIKAKFDAIKKRAELE
AVNSPHPPRGTQPPNRTPKIGRTE
>gi|99082405|ref|YP_614559.1| metal dependent phosphohydrolase [Ruegeria sp. TM1040]
MTSADDLISLVRDYNPKTNEQRLRDAYAFGEEMHDGQFRHSGEPYFTHPVAVAAILTEQRLDDATIITAL
LHDTIEDTKASYEEVSLRFGEEVAMLVDGVTKLTNLQLSSRETKQAENFRKLFMAMSKDLRVILVKLADR
LHNMRTIRAMRPEKQAQKARETMDIYAPLAGRMGMQWMREELEDLAFKVLNPEGRQSIIRRFVTLQRETG
DVIHRITGDMRLELEKAGVEAEVFGRAKKPYSIWRKMQEKDQGFSRLSDIYGFRVITRSEEDCYRTLGTI
HQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRDGKRVEVQIRTRQMHDVAESGVAAHWSYRDGVRTENP
FAVDPAKWIASLTEQFDGEDDHDEFLEAVKLEMYSDQVFCFTPKGDVIKLPKGATPIDFAYAIHTRIGHA
CVGAKVDGIRVPLWTRLRNGQSVEVITAEGQTPQVSWLEIATTGKARTAIRRALREADRERFVKLGHELA
RSAFEHMNKKATDKALETAARALRVSDVTELLARLGAAVITAHDVVQAVYPELTDKDGEEVSPRRAVIGL
EPGQKFERASCCEPLPGERIIGITSRGQGVVVHSADCDRLGEFEDQMDRWVDVHWHSGTHPAVYGVTLEL
TIGNDAGVLGRICTLIGEKKANISNLEFKDRKPDFYRLMINVELRDVEQLHSLILMLEAESDVAAVARYR
ETPGTQARTI
>gi|99082406|ref|YP_614560.1| DNA-directed RNA polymerase subunit omega [Ruegeria sp. TM1040]
MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAELTVDRDNDKNPVVSLREIAEETQSADALRERLIES
NQSQIEVDEPEEDSMALLMGGEADKPQEDDMSEEKLLRALMEAQGQG
>gi|99082407|ref|YP_614561.1| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [Ruegeria sp. TM1040]
MAENRSTYLVAMGSNLEDEGTIPLEILQMCLAELSGEGFDLVAVSRFYATPCFPAGAGPDYVNAAIVLRG
AFSADETLRRLHKIETKFHRRRQQRWGMRTLDLDLLAVDQEIAPDIQTFSHWHSLPQSEQRTKAPEHLIL
PHPRVQDRAFVLVPLRDIAPDWVHPVLELSVREMLKRCPASDVAEVRAL
>gi|99082408|ref|YP_614562.1| hypothetical protein TM1040_2568 [Ruegeria sp. TM1040]
MFYKDERLALFIDGSNLYASAKALGFDIDYKLLRQEFMRRGKLVRAFYYTALLENDEYSPIRPLVDWLHY
NGFSMVTKPAKEYTDSMGRRKVKGNMDIELTVDAMELAPRVDHIVLFSGDGDFRPLIASLQRQGVRVSVV
STIRSQPPMISDELRRQADNFIELEELRDVIGRPPREVPSEPRAVPAED
>gi|99082409|ref|YP_614563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruegeria sp. TM1040]
MAAKPPLTLYLAAPRGFCAGVDRAIKIVEMALEKWGAPVYVRHEIVHNKFVVDGLRDKGAVFVEELEECP
DDRPVIFSAHGVPKSVPAAAEARQMVYVDATCPLVSKVHIEAQRHAEAGLQMIMIGHKGHPETVGTMGQL
PEGEVLLVETVEDVAQVEVRDPERLAFVTQTTLSVDDTKDIVAALQARFPAIVGPHKEDICYATTNRQEA
VKEVAPKADALLVVGAPNSSNSRRLVEVGAKNGCSYAQLVQRAENIDWRALEGIQSIAITAGASAPELLV
NEVIDAFRDRYEVTVELVETAVERVEFKVPRVLRTA
>gi|99082410|ref|YP_614564.1| lysine exporter protein LysE/YggA [Ruegeria sp. TM1040]
MISLQFLLTAFVVVLAPGTGVIYTLALGLGRGRRAALWAAVGCTFGILPHLMAATLGLAAVLHSSAVLFQ
GIKIAGVLYLLYLAWQMLKSDGALSVSAAQPASQPGITIAKRGALINILNPKLSIFFLALLPPFLSGNTA
TATQEMVALGGIFMAMTFAVFALYGLFAAQARSLILGSERVVTWLNRSFAAIFAALALRLAMERS
>gi|99082411|ref|YP_614565.1| hypothetical protein TM1040_2571 [Ruegeria sp. TM1040]
MFRGIPAAPLALGLAGLIPFVWGALTLLVPALQSWGISALGPRFVGPYVQLFYGSVILSFMSGVLWGYAT
RASGRLQSAACYALSVIPALWAFFMTGGGPVSAGLNLIWGFLGLLLLDMMFSLWRLTPAWWVRLRVLLTA
IVVLSLSIGVFL
>gi|99082412|ref|YP_614566.1| methyltransferase type 11 [Ruegeria sp. TM1040]
MSDKQTMAVYAKAAEDYAKGFARTKDTVHDRDYATFVAGLPDGGTVLDLGCGPGHWAARFRDEGLHVTAM
DASPEMARYAKDTYGIDVTVATFEDIDTTAHYDGIWAFFSLLHAPRTDFPGHLLRLHRALKPGGMLALGM
KLGTGERRDTLGRFYTYYSEDALRALLAEAGFEVLGARCANSKGLAGARETFVVLTAHA
>gi|99082413|ref|YP_614567.1| ribonuclease H [Ruegeria sp. TM1040]
MPDLFAYTDGACSGNPGPGGWGALLRAMDGETVLKERELKGGEKETTNNRMELLAAIHALESLARPSKIT
VVTDSAYVKNGVTGWIFGWKKNGWKTSAKKPVKNVELWQRLDAAQSRHDVTWEWVKGHAGHPENERADEL
ARAGMAPFKSSGKSSKG
>gi|99082414|ref|YP_614568.1| hypothetical protein TM1040_2574 [Ruegeria sp. TM1040]
MTILTLLDYASVIVFAASGAMVASRAQLDIVGFAFIACLTAVGGGTVRDLLLDRHPIFWVGDPMPILLAS
GVAVLVFFTAHLVESRLRWVIWLDTFALAIAVPAGTGAALELGYGPVIIVLMGMATGSLGGLMRDVVCNE
VPLVLKQGELYISCAMAGASTAAILVWLGLPSGTALLACAGTTWVTRAGSLAFGWHLPVYKPRPPRQ
>gi|99082415|ref|YP_614569.1| hypothetical protein TM1040_2575 [Ruegeria sp. TM1040]
MSVVFLIIVGAAAGFIATRLMRIEADLITTIVIGIAGALIGGLVLRTLLAVMGLFAGLVGAILGAVALIF
LWQKLQNR
>gi|99082416|ref|YP_614570.1| hypothetical protein TM1040_2576 [Ruegeria sp. TM1040]
MMLALFGTVVIAGIIGYAAERSGFTQNGVIQSIIICVGGAFLFFFLRLMFGIGFNAPGWNAVVSSIGALI
IVPFHWRR
>gi|99082417|ref|YP_614571.1| methionyl-tRNA formyltransferase [Ruegeria sp. TM1040]
MRVIFMGTPEFSVPVLDALVEAGHEIAAVYCQPPRPAGRGKKDRPTPVHARAEALGLEVRHPVSLKGSEE
QQAFAALNADVAVVVAYGLILPQAVLDAPRAGCLNIHASLLPRWRGAAPIHRAIMAGDTHTGICIMQMEA
GLDTGPVLLRKETEIGGEETTAALHDRLSLMGARMIVDALATLPDLKAEPQPEAGVTYASKIDKAEAQID
WSVAAEEVDRKIRGLSPFPGAWFEVDGQRLKVLASRLAEGTGAVGTVLDDKLTVACGSGAVELLRLQRAG
KAAQDREVFLRGFTLAKGTNLLTAQDAE
>gi|99082418|ref|YP_614572.1| formylmethionine deformylase [Ruegeria sp. TM1040]
MTTRTCLPWPDKRLRTKAAEVTEITDEIRAIWVDMIDTMEAMPGVGLAAPQIGVMLRLAVVDGSSERGRA
VRLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFLNEDGVIDRRDFVGIEATSVQHQIDHLN
GKMYFDHLSKVKRDMLVKKARKLAR
>gi|99082419|ref|YP_614573.1| peptide deformylase [Ruegeria sp. TM1040]
MSLLPIVQWPDPRLSTACAPVGAAEDLGTLIDDVLETMYAAPGRGLAAPQVGVLKRVFVMDVDWKEGPRN
PVVMIYPEVLWRSDDTTLAKEACLSIPGLSTRITRPTKIRIRWQDADRAAQEQTFDGFAARCIQHEYDHL
DGRVTFDHFSSEERRLLEAQYLSQNEATA
>gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040]
MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGIGLAAPQIGVLDRLIVMDCVKEGEGDA
RPLVMFNPRVIASSDETNVYEEGCLSIPEQYAEVTRPKVVDVEWMDRDGNLQTETFDGLWATCVQHEIDH
LDGKLFIDYLKPLKRQMITRKMQKLKRERARGTA
>gi|99082421|ref|YP_614575.1| aminotransferase, class I and II [Ruegeria sp. TM1040]
MDFDKIIDRRGTHCAKWDMMEPLYGVTPEDGLAMWVADTDFPVPEAVSAKMREMADHGIYGYVNCEAQYK
SAIQWWMESRHGWSVDADAIFTTTGLVNGVGMCLDTFTQPGDGIVLFTPVYHAFAKVIRLAGREVVECPM
VQEDGAYKMDFDAYDAQMTGKEKMVILCSPHNPGGRVWTQDELTQVAAFCKRHDLMLISDEIHHDLVFGG
RKHLPMAVAAPEISERLIMLTAPSKTFNFAGLHTGQVIIPDETLREQFRRRMMAIYLQGNTAGEFATIAA
YSPDGAAYVEELVPYIEANKRLFDEAVNAIPGLQSMELQSTYLAWVDFSGTGMEREEFTRRVEQGARIAA
NHGTTFGTGGESFLRFNLGTQRARVEEACERLAKAFSDLQ
>gi|99082422|ref|YP_614576.1| hypothetical protein TM1040_2582 [Ruegeria sp. TM1040]
MTTYVPKSVQEALDKARIQGMKKKNRLRVHVGEEIYPVLRLWDRGFAVEEGAIPQLRGLVDLYEGTRHLS
QCLIVAADAEAGEMRYEFKRATAAADSAPLDFYRAPDAPMGLLGHEQHIGDN
>gi|99082423|ref|YP_614577.1| putative glutathione S-transferase [Ruegeria sp. TM1040]
MGLLVDGKWEDVWYDTKSHGGAFKRSEAQFRNWLTADGSPGPDGQTGFKAENGRYHLYVSYACPWAHRTL
IFRKLKGLEDHISVSVVHPDMLDKGWEFKTDADGATGDALFGFDYMHQIYTKADPSYSGRVTVPVLWDKQ
ENTIVSNESAEIIRMFNSAFDEITGNTLDFWPEELREPIETVNKRIYDTVNNGVYKSGFATSQEAYDAAV
VPLFDSLDWLEDILSQHRYLMGEHLTEADWRLFTTLVRFDPVYHLHFKCNRRRIIDYPNLWAYTRELYQM
PGVAETVVMPHIVRHYHYSHDTINPNRILPINPVLDWEAPHGRG
>gi|99082424|ref|YP_614578.1| aminotransferase [Ruegeria sp. TM1040]
MAERSSFAATQDPAQASVSGSPRDHGGNLAAAIAQYGGSREDWIDLSTGINPAPYPLPPLLAEDWTALPD
QDAQQALTDAARRFWQVPDSAEILAAPGASALIARLPVLRPARSVQITTPTYNEHAAAFDNCGWQVLEVG
PTDAQVVVHPNNPDGRLWLPEELKAPFCIIDESFCDICPERSLINRAAQPGTVVLKSFGKFWGLAGLRLG
FAIGDPELIAGLRAAMGPWAVSGPALRVGTHALNDQNWAEASRLELADGASRLDQLMQHAGAQTVGGTDL
FRLYDVEDARAWQERLARAHIWSRIFPYSTRFLRLGLPPADRWSQLETALT
>gi|99082425|ref|YP_614579.1| cobalamin biosynthesis protein [Ruegeria sp. TM1040]
MSTAALLIPAMILDAAFGEPKWLWSRLPHPAVLMGKLVQALDDRLNEGDGRQVKGVIAVAVLVFVGLLLG
WILSWFGSLVSVLIAAILIAQRSLIDHVRAVATGLQNDLDAGRSAVAMIVSRDTATMTGPQIARSAIESG
AENFSDGVIAPAFWFLVAGLPGLLIYKLINTADSMIGYRTEAYEDFGWAAARLDDVLNILPARLSALLIA
LVTGRAGDWGEISADARKHRSPNAGWPEAAMARALGVALAGPRSYDGEMRPFAWVNASGSKSASAHSITR
CCEVLWKSWGLALVLVVALGLLF
>gi|99082426|ref|YP_614580.1| lytic murein transglycosylase [Ruegeria sp. TM1040]
MRVLPSPNAVLHRIALITLLSAPSLAAAQCGGNFQNFVRGLKDEAVSAGYAINTVNEFFNGVSQDQKVLR
ADRSQGVFQKPFIEFSRRLISQDRLNRGRRKGEEFDKIFERIETTYGINRGVLLAFWAFETDYGAFQGDF
NTRNALVTLAHDCRRPELFRPQIFSALELYRKGDFDPERTTGAWAGEIGMVQMLPGDILEHGVDADGDGH
VTLKTSAADALMSAARMLSHLGWRANEPWLQEVEIPAGMDVSASGPAYKQSVAEWSAMGVAPRSGGFAMK
EAQASLLLPQGHNGPAFLAYPNFDIYFEWNQSFTYVLTAAYFATRLEGAQVYDAGNPDQGLSGDQMKELQ
RRLQARGHDVGDVDGILGANTRLAVQKEQLRLGMPADAWPTPALLNAL
>gi|99082427|ref|YP_614581.1| chromosome segregation protein SMC [Ruegeria sp. TM1040]
MRFSKLRLNGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGGGMEDVIFAGTA
TRPARNFAEVSLQIDNSERLAPSGFNDSDQLDIVRRITRDVGSAYKANAKDVRARDVQMLFADASTGAHS
PALVRQGQISELINAKPKARRRVLEEAAGISGLYQRRHEAELKLKNTEQNLLRVDDVIEQLATQLGQLSR
QAKQAQRYREIGEKLRLAEGMLLYRRWREADEARLLAEEELRTRVTQAAKAEGSARLAAEKRAEAEEGLP
PLREEEAIAAAVLQRLMVQRDALWDQDAQARQNIEHLNNRILQLGKDIERESGLNRDAGETIDRLEWEKR
ELAKAGEGHDDRMAEAAEIAQESTSILHNGEEHLSQVTEDVARLAARHQSAQRLVEDCRRALERAQGEGA
KSRSAQSAAQEALAASEAAYEAAVEAEEEAREAAEMAEEALAEADELRTETQAHETDARAKRSEAEGELG
ALRAEVTALAKLVERDTAEGGQVMDDLRVTPGYEKALGAALADDLRAPLADQDGPTGWLTLPSYQRDAPL
PDGVEPLGKYVDGPDALWRRIAQIGVVDADEAARLQPLLQPGQRLVTLEGDLWRWDGFRSWAEDAPSAAA
MRLEQMNRLEALKQDMAHATARTEGAQAAHEALVRKLEEVTRADQAARQARRVADQRVADSARALSRAEA
ERNLAEGKLENFGIAVARHEEDALTASLQLKEAENAQTALEDLAEARAKVEDIKHRVEAARITMLTHRSA
LDELRREGEARTKRAQTVAKELSGWRLRLESAGKRIAELEERRETSQEELEDAMAVPGEIAETREELNEQ
ISDAEARKAEATDALVAAEAVLREAVHHERESERLASEAREARARSEARSEAARETVDATAERIDEVMHL
QPAELLEQLQVAPEDMPDAETLEVEVARHKRQRDALGAVNLRAEEDAREVQSEHDALVTEKQDLEEAVKT
LRSGIASLNREGRERLLTAFEQVNSSFAMLFTHLFGGGEANLLMVESDDPLDAGLEIMCQPPGKKLSTLS
LLSGGEQTLTAMALIFAVFLSNPAPICVLDEVDAPLDDANVTRFCDLLDEMCRQTDTRFLIITHHAVTMA
RMDRLFGVTMQEKGVSQLVSVDLKKAEAMVA
>gi|99082428|ref|YP_614582.1| aminotransferase, class I and II [Ruegeria sp. TM1040]
MALSAQFASRIGRMKASEIRELLKLLDQPGMLSFAGGIPDPALFPAEAFAEAFQNALSPAHQAQSLQYSV
SEGYLPLREWLATYMSKLGVTCGPEHILITSGSQQALDYLGKLFLSPGDTALVGWPTYLGALAAFNAYEP
RYDRLRAGENQPTAHYAEAAKAAGGRVKFAYLSPDFANPTGETMTRAERLQVLATAEALDAAVIEDAAYQ
DLRFDGAAVPPILTLELERNGGDIESCRTIYCGTFSKTLSPGLRVGWLVAATPVVQQLVLMKQASDLHSP
TINQIATCQVAEQLFDAHVDTLRSVYGRRRDAMLAALEAHMPEGVIWTKPEGGMFIWVTLPEGMSGAELL
EYALSREKVAFVPGQAFYADATGRNTLRLSFSNSNEATIEEGVARLGRVIRSMV
>gi|99082429|ref|YP_614583.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MPFQKVQPEKLSSAVVRQIEKLILRGILRPGERLPSERELSERLGVSRPSLREALGELQEQGLLCSRAGS
GVFVADVLGSAFSPALIQLFASDDEAVFDYLSFRRDLEGMAAERAAKFGSDADLGVIQTIFDKMEAAGDP
SVSEAAAELDAQFHSAILEASHNVVLLHMMRSMFDMLRKGVFYNRRIMFGQHTTYEALLEQHRAINSALQ
SRDAKAARAAVETHMDYVKQSLEEQIRAERNAEIAAQRLEHESKR
>gi|99082430|ref|YP_614584.1| ABC transporter related [Ruegeria sp. TM1040]
MFHSLPLLRKPSQIAEDVTPGPTVLRLQDFGLEAGGVQLLSGVTFDLRIGEALGLIGRAGAGKSLLMRAI
CRLLEQERQVVTRGSLQHRGQEIFGRGFDTPEMRAKVVYIPEVANPFPMSVWDNIAYGVKLNRIATRRRE
MADHVEAALRRCRLWDELKDVLHTQRATALPPYQQRLLCLARSLALNPDVVMLDQPTGSIDQQENESLHD
IAMDLKTDHAVVFATASLADTARLADRVAYLEEGALVEIDSAEMILTAALAPQTRAFLESTSA
>gi|99082431|ref|YP_614585.1| F0F1 ATP synthase subunit B [Ruegeria sp. TM1040]
MRATLAIALTLATTSPAFAAGGGWNLGNTDFVVILAFLLFIGILLAAKVPSLIGKQLDNRADSIKSELEE
ARALREEAQTLLASYERKQQDVQAQAERIVANARDEAAAAAEQAKADLAASIARRLTAAEEQIASAEASA
VKEVRDRAITIAVEVADQVISKQMTAADANKLIDAAIQDVEAKLH
>gi|99082432|ref|YP_614586.1| F0F1 ATP synthase subunit B' [Ruegeria sp. TM1040]
MATTTHDAGHGAAEAAHGSSGMPQLDFSTYGNQIFWLLVTLVVIYLILSRIALPRIAAILNERQGTITND
LAAAEDLKAKAVEAENAYNKALADARAEAQRIAAETRAEIQAEVDEAIAKADAEISAKAAESEKAIAEIR
AGALESVKVVAADTASALVAALGGKDDADAVKAAVAERTEG
>gi|99082433|ref|YP_614587.1| F0F1 ATP synthase subunit C [Ruegeria sp. TM1040]
MEGDLAYIGAGLAGMGTGIAALGVGNVAANFLAGALRNPSAAASQTATLFIGIAFAEALGIFSFLVALLL
MFAV
>gi|99082434|ref|YP_614588.1| F0F1 ATP synthase subunit A [Ruegeria sp. TM1040]
MGKLFFYVALALVLVSGLVFAPEKAELAIHPMDQFTVTPLFGGDHIAWYTPTNVTLWMFLAVAAIIGLLV
FGSSNRGIVPSRAQSVAELAYGFIYKMVEDVTGKDAVKFFPYIMTLFMFIVTANFLGLIPMSFTTTSHFA
VTAILAMLVFVTVTITGFVLHGAKFLGLFWVSSAPLALRPILAIIELISYFVRPVSHCIRLAGNVMAGHA
VLKVFAGFAGALGAGAFLPIFAITAVYALEVLVAFIQAYVFTILTCVYLKDALHPSH
>gi|99082435|ref|YP_614589.1| ATP synthase F0, subunit I [Ruegeria sp. TM1040]
MIDDDQKQRMAQLEEKLAAAKKAHEEPEPRADEHYSMANQAWRMVTELVAGLVIGLGIGYGLDVLLGTTP
IFMVLFILLGLAAGVNVMLRSAREIQDKQMAEAEQRADADKDA
>gi|99082436|ref|YP_614590.1| hypothetical protein TM1040_2596 [Ruegeria sp. TM1040]
MALRYWAVIVILGIGWGMSFMFNAVLLRELAPLWVSVGRVGLGALGCWMFLLARGRDWRISPARALALAG
FGALSYAIPFSFYAIGQQHIASGVAGIVNACTPALAVVVTHFWPGGERANWRKSLGVGAGLAGIVILSLP
ILQSGQSSAIWAVFVTLGAPLCYAFSVNVARQFRDMEPVVLVAWALSGATAFILPVAFWVEGAPQALTAQ
AWGALLVIGFALTSAAFIAMYWVLPKVGPTNVTLPTLIAPASALTLGVLVLGEPLEISHLTGLSAILFGL
LLIDGRLFKSRVPAV
>gi|99082437|ref|YP_614591.1| ArsR family transcriptional regulator [Ruegeria sp. TM1040]
MNDTLDTVFAALADPTRRAILSMLLEDDMAVTDVAEPFEMSLAAISKHLTILTRAGLIQQEKRGRVKWCK
LQPDALRAASVWMQGFGQFEPVNLDAFERFLEEELRDGE
>gi|99082438|ref|YP_614592.1| hypothetical protein TM1040_2598 [Ruegeria sp. TM1040]
MELATRPRGLRDSHKGHLAMLAFSALVAGSFSLGALIANEVTPAALNAVRFVLAGILIGAAAALGPGLKP
QQFEAPWRYVLLGGVFATYFVLMFYGLQTADPVSAAAVFTLTPAMSGVFGWLLLRQITTPRMALALVIGG
AGALWVIFRADMEAVLKFEIGQGEMIYFVGCVAHALYTPMVRKLNRGEPALVFTFGVLVAGAILLVALAW
RDLAATDWAGLKPIVWIGLLYVSVFASACTFVLLQVATLRLPSAKVMAYTYLVPSWVILWEIALGKGWPP
ALIFGGIGLTIVALWLLLKDEHG
>gi|99082439|ref|YP_614593.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MENWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTATEAGLDLLRVAQ
ATDDQFSQLVGRLKGQGDEVSGELVVTSLSSMAPMLAPALAEFQQLHPDLVIRYLTGDRLFRLEYGEAHV
ALRAGAAPEQPDNVVQPFVAQRLALYASREYVERHGMLKGQDDMVNHRFIASDNENTRAPFERWLRSTIP
AENIVFRCSDAVAGHQAIRAGAGIGFVSLWEAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKVQSFV
RFLKEHAKSWPQ
>gi|99082440|ref|YP_614594.1| (Acyl-carrier protein) phosphodiesterase [Ruegeria sp. TM1040]
MTQTVLHIDSSARKTGSISRDLTAQVVARLGAETVLHRDLSTPLPLLDETWIGANFTAPEERTESQKDVL
ALSDQLIQEIKQADTLVIGVPIYNFAIPTTLKAWIDQIARAGVTFRYTENGPEGLLTGKRAILVVASGGT
EAGSDIDYASRYLRHMLGFIGITEVEVVAADQQAIDAEASVQKAKDAIAQLAA
>gi|99082441|ref|YP_614595.1| Ala-tRNA(Pro) hydrolase [Ruegeria sp. TM1040]
MDATHAASEEGLPISCEDLLSQLNSWGISYVLHEHAPLRTVEDAKAVEGALLRPGEQALRLKNLYLRDRK
KRNYLVSLEQDRDVDLKALGATLGGGGLSFGSADRLMEFLGVRPGAVTPLAMINGAPKGVRFFMDAQAQH
ADSIYMHPLVNTRTLAMPRADLMVFFERIGVTPEWI
>gi|99082442|ref|YP_614596.1| hypothetical protein TM1040_2602 [Ruegeria sp. TM1040]
MPACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAIEEAWHLRPDW
THMLHSDSLAPDDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLAASYWALAALEPAQVFCMGCE
FDSPGAPIEGDARAGASRSNGARDLTAKARRLEYFASLCGCAIANLSSESSVLPFQRATFDGLDQVRPAY
PSEEASMVARQLEQQYGDPASPNAQYPCAQGMAEIDAAWRRCFTLRDAAVA
>gi|99082443|ref|YP_614597.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruegeria sp. TM1040]
MFENLSERLSGVFDRLTKQGALSEDDVKTALREVRVALLEADVSLPVARDFVKKVQEQATGQAVTKSVTP
GQQVVKIVHDALVETLRGDEDPGALKIDNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLLASLDV
YRPAAMDQLAVLGTQIGVDTLPIVKGQSPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDETLMKEVEDVR
DVVSPRETLLVVDGLTGQVAVEVAEEFDNKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKM
DAIETFEPDRIAGRILGMGDIVALVEKAQETIEAEQAERMMKRMMKGQFNMNDLRMQLEQMQQMGGMQGM
MQMMPGMGKMAKQVEESGFDDKMVKRQIAMIQSMTKKERANPALLQASRKKRIAAGSGMEVSDLNKLLKM
HRQMADVMKKMGKMGKGKMLKQAMKGMFGKGGMPEMPGGMPGGMDPSQMDPKALEAAAKAMGGKGGLPGG
LGGLGGLGGGMGLPGGLSGFGKKK
>gi|99082444|ref|YP_614598.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MSSAPTIETDRLILRPHVAADLEAFWSFYQSDRSRYMDVPTSRSQLWAGMLAEVGSWEIFGWGGLAIETK
DGQLAGQVCISQPPHFPELELGWIVFDGFEGFGYAFEAASAMRDYAFEILEVPTLVSYIDGNNQRSVALA
KRMGAVEDLNARTYDAADQVYRHSPDSSGPGLEAYA
>gi|99082445|ref|YP_614599.1| hypothetical protein TM1040_2605 [Ruegeria sp. TM1040]
MSTPSIPVIETKRLILRGPEAEDYPNFKATFTSYRARFMGGPLNTYEAWMLYAAEIGHWQVRGFGMWMIH
DKITDETYGMAGGWQPAGWPEREIAWIIWPEKAGKGYALEATHAARNYFYTQAGWDGAVSYIDPKNLDSI
RLAERLGAKKDHEAQTIDGNDAVYRHPTPAQLRDSQLTHGIEMEIGHYADPLFKPKGWAID
>gi|99082446|ref|YP_614600.1| chorismate mutase [Ruegeria sp. TM1040]
MTETTTDPVARAAALLKEHRESIDRLDAIIVYTLGERFKRTQAVGKLKATHDLPPSDPAREAKQIERLED
LAREADLDPEFAKAFLNFIIDEVIRHHKKHQE
>gi|99082447|ref|YP_614601.1| 30S ribosomal protein S16 [Ruegeria sp. TM1040]
MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDIEKIQAWLDKGAQPT
DRVARMLEAAGVREKTERNNPNKAKPGKKAQERAEEKAAKAAEAAEAADAE
>gi|99082448|ref|YP_614602.1| Cob(II)yrinic acid a,c-diamide reductase [Ruegeria sp. TM1040]
MTGPVQEAKGCFPQAFRAELDLLMKLRRDVRRFRTDPVDEAVLTRCLSAISLAPSVGLSEPWRIIRVESE
TARAAALQNFETANAEALADYSEDRAATYARLKLSGMREAPVQIAFFCDDETGKGHGLGARSMPEMRRYS
VVTAVTLFWLALRAEGLGLGWVSVLDPARMARDLDVPQSWSLIGYFCIGHPERLSDTPELEQEGWEQRFA
ALPIETR
>gi|99082449|ref|YP_614603.1| 16S rRNA-processing protein RimM [Ruegeria sp. TM1040]
MSDVSEDLICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLGADGQTRYTLAITRAIKGGFAARIVDV
ETKEQADALKGVQLYAPRDRLPSLPDDEFYHADLIGLEVYDTGGTLLGRVKAVQNYGADDLLELHGPGLS
ATVLLPFTKAAVPTVDLSQGRIIADPPAGVF
>gi|99082450|ref|YP_614604.1| hypothetical protein TM1040_2610 [Ruegeria sp. TM1040]
MEQRPGGHMSDTSNQSGPDLDRERVAQALGIATDRARWRLIKSTAAREVFLLEGTDCDPLVVKYDDDVSQ
VRFGELLSCYRSLERVMGRDGAFRMVPLVWADAENRVLALKYVPGLTAYARLEAAEIDFDSRADVLRHCG
AWLRQLHQSASDTPQPFDGEGMLKRVRRVAKTIRSGSQEVAYPKKFLGICAFMHHVTRGAQGRPCRHGTR
HGDFHSRNVVFGRDGPLYALDPAPRDTGPVAFDVARFMTRLGYSFGLARTQTRGLAGLPAADWVALSAGY
GHPCQDDPVVHFLLCHQLFNDWLQMPVEKEHRSASQQRRIERIVSMFEVLRQQLQT
>gi|99082451|ref|YP_614605.1| tRNA (Guanine37-N(1)-) methyltransferase [Ruegeria sp. TM1040]
MSKPTKSHGRLSIGASLKPRELMSDTPDLAGVWKAKILTLFPEAFPGVLGESLTGKALQQGLWQLETVDL
RPFGIGKHKNVDDTPAGGGAGMVLRADVLGDAIEHAMQGTAGNWPLIYLSPRGRRMDQQMMQTFARCDGL
TLLCGRFEGVDERVLEHYGIQEVSLGDFVMTGGELAAQALIDATVRLIPGVLGNQASTEEESFSSGLLEH
PQYTRPADWKGRAIPDVLMSGHHGKIAEWRQDMSEKITQERRPDLWAAYQARKSKT
>gi|99082452|ref|YP_614606.1| hypothetical protein TM1040_2612 [Ruegeria sp. TM1040]
MILRHCFVLGFSALVVAGCDYAGPTSDAAVQKRAQNDALWAERVTVRDGAKPYAFSADRARGVALIAPAA
AGFAYTVADLERITAAQTECKAVFQDGILDLLKGYSETTNLRSTQEQLDSFNRWQLKLDC
>gi|99082453|ref|YP_614607.1| hypothetical protein TM1040_2613 [Ruegeria sp. TM1040]
MAAKFELYTDNAGEFRFRLKAGNGENILASEGYKQKASAENGIESVKKNAADEARFERKETAAGKHMFNL
KASNGQVIGTSQSYASASGRDGGIESVMRNAPEARIEDLT
>gi|99082454|ref|YP_614608.1| MerR family transcriptional regulator [Ruegeria sp. TM1040]
MKLLDIGEVAKQSGTKPSTLRYYEDKGLIQSLSRNGLRRQYGPMVLEQLALIALGKQGGFSLDEIGAMFG
PEGQPEIARTELDARADEIQRQAQRLEALSDMMRHVATCPASNHMECDKFQRLLRLATRIQRRGGTPKGK
S
>gi|99082455|ref|YP_614609.1| major facilitator transporter [Ruegeria sp. TM1040]
MTAAPSTLPALDRRAVALLLAATLTTMANAAISPALPGLEARFADHPQAALLTRFLVPAPSVAVVLIAGW
AGVLADRLGRRPMLIGGVLLFALAGSLGMVLGSLEAILLSRLALGVAVALIMTAQTALIADYFDGAARSR
VLGLQISARNLGGLVSITLAGVLALMSPMHAFAIHGLALLILPILWCAISEPKRPSPATTARGAPPATTQ
RLGLGLWAIAGLQMLTTICFFTMPTQVPFFVASHGIKNTAIIGSVMGALTLAGMLAATRYSTLKPRLGHA
RLFLLGYGLMGLGMAVLALAPGLAMIFLGAALVGLGFATVSPNFNEIALRAAPADLRGRAAGIMTTSVFL
GQIVSPFLTLPMVRHAGYSGTFATLAVLLGLAALVALLAYGVTRGATDAAERAS
>gi|99082456|ref|YP_614610.1| 50S ribosomal protein L19 [Ruegeria sp. TM1040]
MDLIAQLEAEQIAALGKEIPDFKAGDTIRVGYKVTEGTRTRVQAYEGVCISRKNGSGIAGSFTVRKISFG
EGVERVFPLYSTNIESIEVVRRGRVRRAKLYYLRSRRGKSARIAEDANYKAKA
>gi|99082457|ref|YP_614611.1| 50S ribosomal protein L31 [Ruegeria sp. TM1040]
MKKDIHPDYHFIDVKMTDGTVVKMRSTWGNEGDQLALDIDPSAHPAWTGGSSRLMDTGGRVSKFKKKYEG
LGF
>gi|99082458|ref|YP_614612.1| putative chromosome partitioning protein [Ruegeria sp. TM1040]
MAHIIVVGNEKGGAGKSTVSMHVATTLARLGYKVAGLDLDLRQRSLGRYLENRLAFIAASDLNLPMVSLH
ELPEIDPDTLQPGENIYDLRLSAAISELEPIYDFILIDCPGSHTRLSQVAHSLADTLITPLNDSFVDFDL
LAHTDEKGEKIKGPSVYSEMVWNARQLRAQAGLPPIDWIVIRNRVGTQRMVNKEKMERAINMLSKRIGFR
VAPGFSERVIFRELFPRGLTLLDLKDVGVKQLNISNIAARQELRDMMKALELPEVEIDI
>gi|99082459|ref|YP_614613.1| adenylate/guanylate cyclase [Ruegeria sp. TM1040]
MRRFCEELVNHGVPLLRMQLSQRALHPEFGGIGFTWTRQDGLNSEYFERVDHKEPRNEWVQSPFFALISS
GEAEYYSRFSREDEARFPIFTRLKEMGATSYFAHWQPFGDFSQAQFDPDSPNAEGLVASWSFDGPPEEAE
PCLALLRNVFGTLALVLAAAGNREMGRALLQVYLGRDAGARVLSGEIARGSSQRIDAVICLFDLRGFTAL
SESLPGEELVDLLNDYFGHVVQLIQSHGGNILKFMGDAVMAMFNLGTLQEDAQAALRAVAELGPRMRAVN
EVRAAEGLPLAEYTMALHAGEILYGNIGAPNRLDFTVIGPAVNLTARIADMHRAVERSIILSEDVRDAAG
ADGADLVSVGRYMLRGVAEPIELFTLYQPET
>gi|99082460|ref|YP_614614.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MSKNDDFAVQDFLPFLLNRAAEDSSLEFQKLYKGRYGMLRTEWRVLFHLGMYTRMTASDISQRARIHKTK
ISRAVAKLAARRWVSRSRDESDRRSEHLELTAAGRSVYEDLRQQAQVYDQRLTQGFSAEDVALLRRMLRQ
LASMEPPADRTP
>gi|99082461|ref|YP_614615.1| homogentisate 1,2-dioxygenase [Ruegeria sp. TM1040]
MTRHALPDQMIQAPSNQGTHEGYMPGFGNDFETEALPGALPQGMNSPQKCEYGLYGEQLSGTAFTAERPE
RTWCYRIRPSVKHSHRYEKIDLPYWKSAPHIPEDVISLGQYRWDPVPHTEEGLTWLTGMRTMTTAGDVNT
QVGMATHIYLVTESMKDEYFFSADSELLVVPQEGRLRFATELGIIDIEPKEIAILPRGLVYRVEVLEGPA
RGFVCENYGQKFDLPGRGPIGANCMANPRDFKAPVAAFEDREAPSTLTVKWCGQFHETKIGQSPLDVVAW
HGNYAPYKYDLRTYCPVGAILFDHPDPSIFTVLTAPSGQPGTANIDFVLFRERWMVAENTFRPPWYHKNI
MSELMGNIYGQYDAKPQGFVPGGVSLHNMMLPHGPDREAFEGASNSNLGPEKLDNTMSFMFETRFPQHLT
EFAAKEAPLQDTYIDCWSDLEKKFDGTPGKK
>gi|99082462|ref|YP_614616.1| fumarylacetoacetate hydrolase [Ruegeria sp. TM1040]
MPLKKSWVTSANSADHPFPLNNLPYGVFSTPDSDPRCGVAIGDMILDLAAAEAAGLIDLADEPMFEMPFW
NEFMEEGPAVWAALRTRLIALLEEGSDAQNKVEPCLVPMSGAEMHMPIMVSEYTDFYAGRHHATNVGTMF
RGAENALPPNWLHIPIGYNGRASSVVVSGTDVRRPWGQLKGPNDDAPRWAPCARFDIELEMGAIVGTPSD
GPITVQDADDHIFGYVLLNDWSARDIQAWEYQPLGPFQAKATATTISPWIVTKAALEPFRCDTPAREVEL
LDHLKDCGPMLYDIDLAVTLRPEGGEEATIARTNYKEMYYSAAQQLAHHTTSGCPMNAGDLLGSGTISGP
NKDERGSLLELSWGGKEPLTLPSGDTRSFIEDGDTLTLKGAAKGEGYTIGFGDCTGTVLPALSDPFAR
>gi|99082463|ref|YP_614617.1| beta-lactamase-like [Ruegeria sp. TM1040]
MAKAFASQGDMSEKKISFTEVGEGLYAFTAEGDPNSGVIIGDDSVMIVEAQATPRLANKVIECVRSVTDK
PISHVVLTHYHAVRVLGASAFGAQNIIMSDTARAMVVERGQEDWDSEFQRFPRLFEGHESIPGLTWPTTT
FSDSMTVYLGNRRVDIKHLGRAHTAGDAVIHVPDQNVMFTGDIVEYHSACYCGDGHFGDWGKTLDNIKAY
DVDAIAPGRGDALVGKDMVNAAIENTRDFVESTYRPAAKVAARGGSLKEAWDAVRDACDPKFKDYAIYEH
CLPFNVARAYDEARGIDTPRIWTAQRDLEMWEALQS
>gi|99082464|ref|YP_614618.1| FAD-dependent oxidoreductase [Ruegeria sp. TM1040]
MNKIFEVPLYPYARHADQDAQPPARHKVVVVGAGPVGLAAAIDLAQSGVPVVVLDDNDKVSFGSRAICFA
KRTLEIADRLGVGHAMADKGEEWNVGKVFFGDRKVYDFNLLPEDGHQFPAFVNLQQYYIEEYLVDRVRAL
RDEGAPIEIRGKNRVTHVEDLGGHVALTVDTPDGAYQLETGWLIACDGAGSPLRAQMGLDFVGRVFEDNF
LIADVVMEADFPTERWFWFDPPFNKGQSALLHKQPDGVWRIDLQLGWDIDKEEEKRPENVIPRLKAMLGE
DVQFELEWVSIYTFQCRRMEKFRHGRVIFAGDSAHQVSPFGARGANSGLQDTDNLIWKLKLVLDGVADES
LLESYNAERIAAADENILNSSRSTDFITPKSDMSRIFRDAVLDLSEHHSFARPLVNSGRLSLPSVYDGSR
LNSADRLPGAPTRTRPGAPCPDVPLEGGYLLPQLASGFTLLAINAEVPDGFEEAGVFVPALRLNGEASAP
LAERYLGEASSAVYLIRPDQHVATRMDHFDPAHFHAALRRAIGKE
>gi|99082465|ref|YP_614619.1| hypothetical protein TM1040_2625 [Ruegeria sp. TM1040]
MSDDLTLTPNLAQPDDAYALLLSAHEGLSKAQSDALNARLILLLANHIGDAEVLKQALTQAKQGLTDG
>gi|99082466|ref|YP_614620.1| maleylacetoacetate isomerase [Ruegeria sp. TM1040]
MADVVLYDYWRSSASYRLRIALNLAGIAYESRSVDLVAGAQRSPEHLARNPQGFVPVLEIDGERFTQSLA
CLTYLDSTRGLGLLPQEPVARAHVEALAQSIAVDLHPVCNLSVARFGVTSSGGSLQMGDWMRQFIGPGLE
AFDRLLARWPEPGEGSFCTGARPGLADICLMPQLYNARRWEVDLNPFPRLQRIEASCAAHPAFAAAHPDH
HQPAQ
>gi|99082467|ref|YP_614621.1| protein of unknown function UPF0052 and CofD [Ruegeria sp. TM1040]
MSKTAPSPPAPASAPGSDPGSDPGPAHVRPPGRDATQGPRLLFFSGGTALNEISRRLKAYTQNSVHLITP
FDSGGSSQVLRKAFGMPAVGDLRSRLMALADETDRGQPEILRLFTHRFAKHASERNVTQDAARLFEGTHP
LLQGIPTPVRQQIREDLRQFQDAAPADLDYRNASIGNLILAGGYLRHGRQLEPVLAQMSRMVAVRGTVRP
IADVNLEIGAELRDGRRVIGQRRMTGKEHAPLTSPIARLFLSDGTRELPADAVPLPQSNQDLIAGADLIC
YPPGSLYSSVICNLLPKGVGQAIAARNVPKVYVPSLGTDPECLAMTLSDQISALLAPLRRDAGDVATSAF
LSHVICDLSVSEAARAEVLRDHGIPCIARPLAVSSGKSPCYAPDALCRQLLALA
>gi|99082468|ref|YP_614622.1| penicillin-binding protein 1A [Ruegeria sp. TM1040]
MTQGRNSGRGTGRGRGPLVAEKRNLGGNQRKPAKKAPRKRAPQKAKRGWSLFGRRKTARPQRRRGLLGWL
LLPFQIVARVIWAVSWRMGVVGGLFLAGAVAFHYTKLPEYQALLDGRHQGSVTLLDRNGKTFAWRGDQFG
GVVTADTVSPHLKNAIVATEDKRFYRHFGISPRGIASAVRINLSEGRGPLSGHGGSTITQQTAKLMCLGV
EYDPDIWESEAAYESDCRQSSLWRKGKEAIFALAMEVKYTKNEILSIYMNRAYMGGGAHGVEAAAQRYFG
KSANQVNPPEAAMLAGLLTAPSTLAPTNNIERSRNRAATVLRLMEEQGYLSPKERQMAAANPAELSEAAA
ARAGGYFADWIMDTVPSFLGDQTTEDVVIRTTLDQRLQQAAEDAVNYVFENKVRAGSKAQTAVVVMSADG
AVRAMVGGRKVRASGVFNRATQAKRQTGSAFKPFVYAAALELGYSPYDRVLDAEYCLDIPGSGPWCPQNY
TRKFYGEVTLARALRDSLNVPAVKVSEAVGRDKVRLVAGEFGIESDLADGPSLALGVSESTLLEMTGAYA
GILNGGSSVTPYGVEALTLVGDSEPLMGASGGMGERVIRPVAAQELIWMMEKVIAEGTGQRAQIPGWQAA
GKSGTTSSAKDAWFIGFTADYVAGVWMGYDDNTPLTGVTGGGLPAEIWRETMVRVHDGLAPQPLPMAAPE
PIVVPEPQPQRRNGGGFGRELERTLNGVLQDIFGN
>gi|99082469|ref|YP_614623.1| nitrogen regulatory protein P-II [Ruegeria sp. TM1040]
MKLIIAAIKPFKLEEVREALTKLGVSGLMVTEIKGFGAQAGHTEIYRGAEYEVNFVPKVKLEIVVPSDLA
DQVVETITQASRTGKIGDGKIFVLDVAQAVRVRTGETNQDAL
>gi|99082470|ref|YP_614624.1| ammonium transporter [Ruegeria sp. TM1040]
MKKLTVTLAATALATLPGLAFAQEAAAETPDINPYIFTTLLFLIGGFLVFWMAAGFAMLEAGLVRSKNVT
MQLTKNVALFSIAAIMYWLVGFNLMYPGDGWIIPGVMGPLFATTSLEPVGLGADAAALDYASVGSDFFFQ
LMFCATTASIVSGTLAERIKLWPFLIFVAILTGVIYPIEASWVWGEGFLDGLGFSDFAGSTLVHAAGGFA
ALAGALILGPRIGKYKDGRTIPMPGSNLALATLGTFILWLGWFGFNGGSQLAMGTVGDVTDVSRIFANTN
MAAAAGAVTALILTQLLFKKPDLTMILNGALAGLVSITAGPLDPTLFGALLIGAVGGVIVVFTVPMLDKM
KIDDVVGAIPVHLLAGLWGTFAVPFYTEGTSFITQIVGFATIGIFTFVVSGVVWMILKATMGIRVSEEDE
INGLDMAELGMEAYPEFKGS
>gi|99082471|ref|YP_614625.1| ribonuclease T2 [Ruegeria sp. TM1040]
MRGVFFTVLTAAGLVAGAAQAEGERAGAFDYYVMALSWSPNWCAIEGDAKGSEQCDDRHDYGWTLHGLWP
QFHRGWPSYCRTTEAPPTRRQTGEMRDIMGSPGLAWHQWKKHGTCSGLSARDYFALSRQAYDTVTRPEVF
RRLDKAVRLPASVVEEAFLKANPSLTADSLTITCRDGFIQEARVCLSRDLDPVPCGRDVIRDCTLSNATF
EPVR
>gi|99082472|ref|YP_614626.1| hypothetical protein TM1040_2632 [Ruegeria sp. TM1040]
MAKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDVAAGVKGFDPIANNQLTQEEITTAENN
PLHKLKLKFNAAAAGEEKRRGPRYTPLSKRQDRPNSILWLVKFHPELADAQIAKLVGTTKPTIQSIRERT
HWNIANMEPIDPVALGLCKQSELDAAVQKAAKKRAAEGGVMNDDERRKLVSTEQSLEMDAEPKIPSAIEG
LETFTLGSSDEDDKKEDEIVDADSFFNLPASSDEDEDDDSDDPRY
>gi|99082473|ref|YP_614627.1| hypothetical protein TM1040_2633 [Ruegeria sp. TM1040]
MTLQVTLTPDLVQAPLVTFGFDPFEARLVSIMRHFVAAANAPGSQAWHRAFVIAAENWGEAHGLAVAHTL
WPVVRELLELREGDFTSNDPLDLDTRDLLTTDEAQFIAMLHHMRRDHTAKARDAVEALTHGQMNPDLIRA
GLSFADRFPSGARQRLRGTPALRVVG
>gi|99082474|ref|YP_614628.1| 3-mercaptopyruvate sulfurtransferase [Ruegeria sp. TM1040]
MDDPKTLVSTDWLAAHLKDPDLRILDASWYLPQMERDAKAEYDAEHIPGARFFDIDEISDHRSDLPHMAP
PVEKFMSRLRAMGVGDGHQVVIYDGAGLFSAARVWWLFRLMGQVNVAVLDGGLPKWKAEGRPLEDLPPVI
RDRHMTVRVQNHLVRDVTQVSSAAKLGDHEIIDARAAERFRGEAPEPRPGMRAGHIPGSKNVPFTTLLND
DGTMKDAETLRSLFEAAGVDLTKPAITSCGSGVTAAVLSLAMERMGKHDHALYDGSWSEWGAFPTLPVAT
GDN
>gi|99082475|ref|YP_614629.1| aromatic amino acid aminotransferase [Ruegeria sp. TM1040]
MFENLKPQPADKILALMQMYREDPRDQKVDLGVGVYKNAEGVTPVMRAVKAAEQRIIDEQTTKAYTGLAG
DPAYADAMIDLILGTSVERSKIAAVATPGGTGAVRQAFELIKMANPEARVFVSDPTWPNHVSILKYVGIE
TVVYRYFDTETRAVNFDGMIEDLKGAKTGDVVLLHGCCHNPTGANLNISQWQAVVELLNERGLIPMIDIA
YQGFGDGLEEDAAGVRLVASSVPECLIAASCSKNFGIYRERTGLLMAISQKGDEAGLNQKTLAYLNRQNY
SFPPDHGARVVTTILNDPELRADWQKELEETRLGMLALRQQLADELQRLSGSDRFGFIAEHRGMFSLLGT
TPELVEKMRVDAGIYMVGDSRLNIAGLNAQTVPILAKAIIDAGV
>gi|99082476|ref|YP_614630.1| enoyl-CoA hydratase/isomerase [Ruegeria sp. TM1040]
MIDHHQDSRGLLTLRLNRPEKANALTPEMLAQMIEILRTATEARALILTGTGKVFSAGADLDAAKAGLAT
SPLWEELSGALAALPCLKVAALNGTLAGGANGMALACDLRIAVPTAKVFYPVMQLGYLPQPSDAKRMRAL
VGPARTKLILAAGQKITAEEAYGFGLIDRIVAPEELMAEAEALVAPALAAEPDVARAILRAADA
>gi|99082477|ref|YP_614631.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MKFANKTIVISGASRGIGASAAKEFAAEGANVVLLARSADALEALAQEIGEKALALACDVADYAAVEATF
ARARDHFGSLDVLICNAGMIDPIARLEEADPAGWAQLINVNITGVFNMMRAGLPHLKAAGGGAVLTIGSG
ASQRPLEGWSAYCTSKAGAAMLTEALHLEEGENGIRVMGLSPGTVATQMQREIKASGINPVSQLAWEDHI
PAEWPARTLMWMLSADADEFVGTEIALRDEGIRKRVGLI
>gi|99082478|ref|YP_614632.1| hypothetical protein TM1040_2638 [Ruegeria sp. TM1040]
MSISFVRKLGAVAPVLLIAQAAHADVTAQDVWADWKDYMSSTGYEITATETESSGKLTVSDITMSMDVEG
DSFSMTMGSLDFIENGNGTVNVVMPTTFPMSFNVNADGDAISGDLLYTHDGSPMVVSGDTSEMAYNYTGA
TSAISLANLVIDGDAVPADAIMLNVNVTDMVSNTLMKIGDVRSYSQTMTMASVAYDFMFQEPEGDDGAAF
NGALQGLEFTGDMTIPEVDDPSDLAAMLKAGMAYVGGFTFESGNTNVKGSDGPDNFDFQTSSNGGAINIG
LSPAGLNYDVTQRDTTLNMMGSDIPFPVSLSMKEMGMNFAMPLTKSDEEQDFALGIALREFAVPDMLWGL
IDPAGELPRDPANLVVDLSGKGKLFFDLVDEEQMAAVESGEEMPGEVNSLSINEILLSVAGAELTGDGAF
TFDNTDLESFDGMPAPEGEASLKLVGANALIDKLIGMGLVSEDDAMGARMMMGMFTVPAGDDTVTSKIEV
NEEGHVLANGQRLK
>gi|99082479|ref|YP_614633.1| microcin-processing peptidase 1 [Ruegeria sp. TM1040]
MAQSPCDTAALWLALVQCHPFAKVPMTQTPETLCHALLDAAQKAGADSADAMAAEGSSLSIEVREGALEH
AERSEGVDIGLRVFVGQRQAQVSSSDTRPETLTAMAERAVAMAKEAPEDPYAGLADPAQLAKSWDLDALE
MADPSAEPAPDQLQQDALAAESACAAIDGISQVQSAAAGYGRHDIHMAASNGFSGGYARTSRSISCVGIA
GTGTGMERDYDGDSRIYQTDLRSAEEIGRTAGERAIERVNARRPKTGAYPVLFDERISSSLIGHLLGAAN
GASVARGSSWLKDSLGAQILPEAFSVIEDPLRPRVSGSRPFDGEGLPTQRRAIVDKGVLTGWTMDLASAR
KLGLESTGNAARGIGSVPSPSNWNIALTQGQQTREELLRDMGTGLLVTSMIGSTINPNTGDYSRGASGFW
VENGEIQYPVNEVTIAGNLLDMLKTLVAANDARTHLSRVVPSLLVEGLTLAGE
>gi|99082480|ref|YP_614634.1| inositol monophosphatase [Ruegeria sp. TM1040]
MPENDLSLLIGAAQKAGEIAGQFTGTEAQKWDKPDGAGPVTEADLAVNRYLEDSLRAARPDYGWLSEESE
DDPTRQSRARVFVIDPIDGTRSFADGSRTWAHSLAIVEQGTPIAAVVYLPQRDLLFAAASGQGATCNGAR
LQTTRAQNPETAHILSAKPTLEAKHWQGGTPPGFQRSHRPSLAYRMSRVADGSYDAMLTLRPTWEWDIAA
GVLIVQESGGRATDRDGAPLRFNRADALQNGVVAGGPKMHRALLNRLVYGAQGSKP
>gi|99082481|ref|YP_614635.1| 3-deoxy-D-manno-octulosonic-acid transferase, putative [Ruegeria sp. TM1040]
MFGPGGTQIPNPLRLKRPEGELVWAHATTQERLLGLCDVGCRLKMMRPDLSVMLTWEEDMRPAKLPEGCD
IPLGPLTVEQPNDIRNFLDNWSPDVCVWAGGRLRRLLMRHMREREMPALLCDIDADELPSRASRWLPDQR
HRLLNGFAAILVPGTEVSERLKRAGVAPERIHPAGRLFQSSTPPSCNDDELAQMQKQFASRPLWLAAHVS
LSELPAVLKAHRGALRLLHRLLLVLTVDTFEDLDAARSLLRKEGLSFADWDMGEDPEDHTQVAIGLTENL
GLWYRLCPISFLGNSLIRGAQGTNPLDAAALGSAILHGPGVVAHAQAYQRLAALDAAERIHGEEELADAV
FRLSSPDRAAEMALAGWQVVTEGAVMTDTLLERIQDLLDQSELSHAPA
>gi|99082482|ref|YP_614636.1| tetraacyldisaccharide 4'-kinase [Ruegeria sp. TM1040]
MRPPEFWNKPPSHFDLRACLLSPLGALYAKGTATRLRKGAPTRAPVPVICVGNLNAGGTGKTPTVIWLME
QLGAAGHEVHVVSRGYGGRLEGPVQVDPRRHSAADVGDEPLLMAAFGEVWVARDRGAGVTEAAAAGASVI
VMDDGFQNPSVAKDFSIIVVDAKRGFGNGRCLPAGPLREPVATGLSRADLVLSLGDARAQETFQSIWGAE
IPVPHLTGHVEPLPTGMPWQGTKVLAFAGIGHPEKFFATLRGLGAELCRAEALEDHQTLAPALLTRLEQE
ARLLGAQLVTTEKDAVRLPLSFRPKVITLPVRLRVAQGDTLLARLKDIAPPPD
>gi|99082483|ref|YP_614637.1| DsbA family thiol:disulfide interchange protein [Ruegeria sp. TM1040]
MTRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTSTIMEMVQGAED
APVTLIEYSSYTCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFGLWASMVARCGGEEKFFGITD
LIFKQQAEWTRAGGPAEMVEALKKIGRVAGVDGDALEACLQDATKAQTLVTWYQENATKDDISSTPSFIL
NGTKIANQPYEDLKALIDAELEG
>gi|99082484|ref|YP_614638.1| hypothetical protein TM1040_2644 [Ruegeria sp. TM1040]
MAYRHSSTRGFKRTGSLLNDQIRKAGESRGFAVSRLLTHWEEIVGPELAAMARPVKVGYGRGGFGATLTV
LTTGAMAPMLEMQKAALREKVNAVYGYNAISKLHITQTAPIGFADGQVDFRYAPKTRKQEEPAPEDVAAA
KETATGVENDDLRAALERLGRNVLTRQKSLRKGYK
>gi|99082485|ref|YP_614639.1| A/G-specific DNA-adenine glycosylase [Ruegeria sp. TM1040]
MRDHPVSAEQLSQDLLVWYDTHAREMPWRVGPAARASGVRPDPYRIWLSEVMLQQTTVAAVKDYFERFTR
RWPRVGDLAAAEDGDVMAEWAGLGYYARARNLLKCARVVAEEFEGVFPDAYEGLIALPGIGPYTAAAISA
IAFDRPETVLDGNVERVMARLHDEHEPLPAVKPVLKAHAAHLTPSARPGDYAQAVMDLGATICTPKSPAC
GICPWRDPCRARVKGTAPELPKKTPKKPKPTRYGFVYLARSAEGDWLLERRPDKGLLGGMLGWPGSEWND
APTETPPFDADWQDLGAEVRHTFTHFHLILQVRSAELPADFEPRAGQELVRRHDFRPSSLPTVMRKAFDL
THR
>gi|99082486|ref|YP_614640.1| alkane 1-monooxygenase [Ruegeria sp. TM1040]
MTEFIPTEKLRDWRHALPFWLSLALVPLVWAGAYLGSWWVLMTPLATWYLFAVLDGVLGLELENADPQTA
EADLKWYVRLTSVWVPIHVLCLFGLIAYVSDATHLSRLEKIGVFFGMGVISGTIGINYSHELMHQRSRLE
RWLADILLAMVLYSHFRSEHLLVHHRYVGTPRDPVTARYNEGFHRFYPRVLWQCWRSAFGAEADRLARKS
LPWTHRSNPFWRYWALQLGMLALAFALGGLSGVLLFLVQASAAIWQLELVNYIEHYGLTRKHLGDGKYEH
VKPHHSWNAAHKASNWLLINLQRHSDHHYKPDRRFPLLQNYSASEAPQLPYGYPVMSIAAMIPPLWQRIM
NPRVRRWRKQYYPEITDWKPYNRHQTPMPR
>gi|99082487|ref|YP_614641.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MVTSPFQKVYVMSQIHRDELLFWFGLGEEDRSSIVGMAPLVERHIDAVLDDFYDLCLSRPETKGYFPTEQ
IVAHAKAAQRAHWVKLFSGRFDDSYMSSADKVGRVHFEVDLPFHLFLGGYATVGDRILKVVLTQKNGWRG
TKARMKQARALQRLILFDCERVIAGYIDAQLQEREKALTVMTQGIQRLESGDLTTEMPSGDKGGLPERYD
NVRLSYNHLLRHWSGILSDATRRAHSVDAKMAETARMTREMAHRSGEQASTLNETVTSVNSMTCSTRLTS
EKVNDAAKQIEANRLVAEEGGAVVRDAITAVERIEQSSSQINKIVDVIDEISFQTTLLALNAGVEAARAG
EAGKGFAVVASEVRALASRATDAADDIKKLIATSSDQVLEGCQLVHQTGERLDSIRSSADNVARIMQEVD
GVIFEQTGQLENISERMERLDRYTQDSADQANEVSSTADALAQDSAALKASMDGFKTGDIALREAAQDKE
FERLANRG
>gi|99082488|ref|YP_614642.1| adenylate/guanylate cyclase [Ruegeria sp. TM1040]
MADVALTKADPPARASLDPILQDDALQSQHIHAALEEHKKRGVEMAVLARWIIMPMVAVFLIAVYPEPSQ
LYYVALLALLCVNGFFIRRFARVGRSRAELGLIMLDLVLMTFGMVVPNPFDPNEMPVPMLYQYDNFMYFF
IILATGALAYSWRTVMAIGVWASVIWLGAAGLMWAFMTPDEELARRLSEVLVDWPHVQDLYNPNDVGFRF
RIQEAMVFLMVAAILAQSTRRFYLMLDQNADLARERANLSRYFSPNVVDQLSQNDEAISQVRTSRIAILF
VDIVGFTRLAEHRDAVEVIELLRGFHGRMEAEVFRHGGTLDKYLGDGLMATFGTPAPGPQDASDALACAR
AMCAVLDQWNAERRATGEPEIHAGIGIHFGEAVQGDIGANRLEYAVIGTAVNIASRLEGMTRPMQARIVM
SDALYRRVQEEGGAAALLRGFHCTPEQTIRGLQEPMPVWALTSL
>gi|99082489|ref|YP_614643.1| DNA methylase N-4/N-6 [Ruegeria sp. TM1040]
MTHLVDNQNERKSAVVIEAEQMNKTIAKGAATALPLNTILDGDCIERMASLPSNSIDMIFADPPYNLQLK
GQLHRPDNSKVDAVDDEWDQFSSFGVYDQFTRAWLKEARRILKPNGALWVIGSYHNIFRVGTALQDEGFW
ILNDVVWRKSNPMPNFRGKRYTNAHETMIWASKSEGAKYTFNYEALKALNEGIQMRSDWVMPICTGHERL
KDANGDKAHPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKVAEERI
KNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRADGTLIGDNIKGSIHQVG
AHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQA
>gi|99082490|ref|YP_614644.1| ribonuclease HII [Ruegeria sp. TM1040]
MRPFFCAAFGAPSCMRAANALSGGMDYPDLSLEEAAQARGYTRIAGVDEVGRGPLAGPVTAAAVVLDLAD
LPEGLNDSKKLTPRRRAALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDG
NLIPRALHIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHRDALIKIG
VTPHHRRSFKPVHKILYQE
>gi|99082491|ref|YP_614645.1| hypothetical protein TM1040_2651 [Ruegeria sp. TM1040]
MTRLASSTRNLHRKFIAAVIATALVITGFSAAPARADSDDIAKFIAGAAILGIIGAAINDHKKDRHRPPH
VDPTPAPKPLPPRVRRYDLPAQCLTSIRVHGKERNLLGMHCLRRNYTHVNTLPNRCYREFDNRTQSRRGY
RPACLRQYGYRLVRL
>gi|99082492|ref|YP_614646.1| hypothetical protein TM1040_2652 [Ruegeria sp. TM1040]
MKHTRLLPALLLLLLALAQPAQAAGCYADYKAKQDQPLKLHYGVMELSGDCSKAAAKGEVAERLSRAGWT
LLNVLTVFGPEGLEQRKADAGRNFLRF
>gi|99082493|ref|YP_614647.1| putative transcriptional regulator, CadC [Ruegeria sp. TM1040]
MPDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDLTTQAEIKLLE
ILAQSGTAFADTLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQIERAGIQVTELLISREENTV
YLNNMGFKLTQAAMETLSVLAEARLDDDVLSGAEIEAVISGKSSHDCEEAAGATRIKRLRDTLGNQMISE
LLVKNIAKRGYVLAINKDVIRMV
>gi|99082494|ref|YP_614648.1| adenylate/guanylate cyclase [Ruegeria sp. TM1040]
MNIQLPSRNGYGILVEQLDGPVSAYHGNTLLAQSSRAKVMYETRLPPVVYFPKEDLQVDMDQACSKTTFC
PFKGTAHYRDLILPGKKELCSAVWSYDETLPEARQIKGHVGFMPDALDRLDLGNNRLQAPDDGNISGPLV
DWLLREAAFLPSPETFTEVLVERLQQQGLPVSRLTILAWALHPRIAGHHYRWEKGGAGVETFSPSYEIHE
KPEFKNSPLRHVSKGLGGLRYRLTGNVPSEDFPILRDLREKGMTDYVAMPLPFSDGRINVLTLASDAPEG
FSTADLGLIFECSAVIARFYEVFMQRENAQAVLETYVGKRSGARVLGGDIRRGDGDEIDAAIMFCDLRGS
TQLEETLPRDKYVTLLNEFFETTSGLVHENGGEVLKFIGDAVLAVFPAGQNPAEARAQALKAAQDIVAAL
AEIAPCPSLPNLECAIGIASGSVLYGNIGSQERLDFTVIGQAANIAARLGDYGKTIGHRIVVSRDILTQT
AEAKPLGLVKLHNVSQPVESFAIAASS
>gi|99082495|ref|YP_614649.1| aldehyde dehydrogenase [Ruegeria sp. TM1040]
MARTADDILKNLGLTAAELSGGSRAVRSPIDGSTLAEVHDTPAGEMPAILDRAQSAFKAWRVVPAPRRGE
LIRLLGEELRAAKEDLGALVSWEAGKITSEGLGEVQEMIDICDFAVGLSRQLYGLTIASERPGHSMRETW
HPAGPVGVISAFNFPVAVWSWNAALAIVCGDPVIWKPSEKTPLTALACTKIFERAVKRFGEDAPEGLLQI
LIGDAELGKELVASPSVPVISATGSTRMGRAVAPVVAERFGKCILELGGNNAMIVAPSADLEMAVRAIVF
SAVGTAGQRCTSLRRLIVHNSIRADLVKRLKAAYAGLPIGDPQAAGTLVGPLVDEAAGDAMISALKAAES
EGGTVHGGARVTEGVPAGGVYMAPAIVEMPGQSASVKEETFAPILYVMGYDDFEDAVEMQNDVPQGLSSC
VFTLNMREAESFLTAAGSDCGIANVNIGPSGAEIGGAFGGEKETGGGRESGSDAWKSYMRRQTNTVNYSA
ELPLAQGVKFDI
>gi|99082496|ref|YP_614650.1| saccharopine dehydrogenase [Ruegeria sp. TM1040]
MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSLAKGLQGFDAV
ISAAPFFLTPMIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQSGLAPGFVGIAGASLAAEFD
ELDSLHMRVGALPKFPTNALKYNLTWSTDGLINEYCNPCDAIVNGARTKTAPLEDYERLSLDGVEYECFN
TSGGLGTLPETLDGKARAVSYRSIRYPGHCDILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCT
ARGRINGELREKSLINKSYARQIGGKTWSAIQVTTTAGVLGVVDLVRQGVLPARGFVSQEQVKLQDFLET
EFGQLYRAGDIDHMTDTTKLAAE
>gi|99082497|ref|YP_614651.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MDDLDRRIVAALQHNARESTTKLAAKLGVARTTVHERITRLEERGIIAGYTVVLRDPDEGNRVMVVVLLE
VQQKETGRIIKRLEAYPEIRQCLSINGEYDLMVSAEAPRIEDLDILVDEVGRIPGVQRTNTLVVFGRRID
RV
>gi|99082498|ref|YP_614652.1| hypothetical protein TM1040_2658 [Ruegeria sp. TM1040]
MIILVSPAKKLNEERARGQATTVPRFLDQAAELAGVARTWSEDEIAKLMGISATLAKLNKDRFAAWSGDG
QCAAGLMFDGDVYKELEPATFDDVTKDAAQRRLRILSGLYGLLRPTDAIEAYRLEMGRKTPGHPAGTLYG
FWGDKIAAAIVEEARELGVGSVLNLASEEYAKAVPPKALGDLTLISPRFEEERGGSRKVIGVAAKRARGA
MARWVLENGITEADDLKGFTVGGYAFDAETSAPQRPIFVRG
>gi|99082499|ref|YP_614653.1| ATP-dependent DNA helicase RecQ [Ruegeria sp. TM1040]
MHDAIPLLRDIFGFDDFRPGQEEIVEAVSAGENVLAIMPTGGGKSLCYQLPALRRAGITVVISPLIALMR
DQVRALQEAGVCAGALTSGNTEEETEAVWNAIEAGELKLLYMAPERLAAGSAMGMLRRIGVSLIAVDEAH
CVSQWGHDFRPDYLRIGELRRALDVPLAAFTATADQETQAEIVQKLFDGEAPRAFLRGFDRPNIHLAFAA
KDSPRKQILEFADARRGQSGIVYCGTRAKTEDIARALEASGHVACHYHGGMEAEDRRIVETRFAREDGLI
VVATVAFGMGIDKPDIRWVAHADLPKSIEAYYQEIGRAGRDGAPAETMTLFGPEDIRLRRNQIDEGLAPP
ERRGADHARLNALLGLAEAMSCRRQSLLSYFGENPEPCGHCDLCDTPVETFDGTTAVRKALSAILRTEET
YGAGHLIDILIGNANDRVRQKGHDDLSVFACGREHSKPEWQAIFRQMMGRDLVRPDPERHGALRMTEPAL
PILRGEDSITLRKDTIKSATRRPAVKALVSDEDAPLLSALKAKRRALAEAQKVPAYVIFPDRTLIEMAEN
RPQSLDEMARISGVGAKKLERYGDAFLSVITGEAEALHPARRKLAGRAQGSIYDTLLEVQARLQRGECGT
QKPLTCSASQLAKVAQMRSDDESGMERLLGERRAQRFASAFLEVLRGAG
>gi|99082500|ref|YP_614654.1| hypothetical protein TM1040_2660 [Ruegeria sp. TM1040]
MITSNAKSDEDLTPMMAIYGPLQLILSVVYFIMIVHIIMSWLINFQVLNLHQQFVAQIWYGINRLLEPIY
TPLRRILPNTHPLDLAPLAALLIVISLRAYILPTLFGYM
>gi|99082501|ref|YP_614655.1| hypothetical protein TM1040_2661 [Ruegeria sp. TM1040]
MYPIVRLLKDAALASRQPRLGPLETHVSRHHCWPWDLDIWLELNNGRTLTLYDLGRTMLTLRTGLAGVLK
REGWAVAVAGASVRYRRRIKAMERFEMKSRAIGWDDRFIYVEQGMWKANGECANHALLRTVVTDKNGIVP
PERVIKAWGQDIQSPDLPEWVKAWCAAEDLRPWPPMAESSADKGDVALASAS
>gi|99082502|ref|YP_614656.1| major facilitator transporter [Ruegeria sp. TM1040]
MTEQSLQSIPLRKRIWGWWFFDWASQPYHTLLVTFVFGPFFAASATQYFIGTGLEGEAAKAAAQSSWSLC
LTITGLIIGLSAPFLGALADIAGRKLPWIIGFSIAYVLGAAGLWFMDPAGSNLWWMLISFGVGFIGAEFA
LIFVNAQLPSLGSKDEVGALSGSGFAFGYLGGVVSLFIMLLLFVEQDSGKTLIGLDPILGLDASAREGTR
AVGPFVAIWFVAFMIPYFAWVRDPRTPRRGTASLGRAVSMVVASVKGLKHRKSLTSYLVSSMLYRDALNG
LYGFGGVYAGLVLDWSITQIGIFGIIAAISAALFSWAGGLADARFGPKPVIVLAILVLSLVCLIVVNMTR
TEVFGVALAESSGLPDQIFFACGVLIGGFGGILQATSRTLMVRHTTPETATEAFGLYGLSGRATAFVAPA
LIGLMTTLTGSARLGITPVIALFALGLLLLLWVDGEGDQS
>gi|99082503|ref|YP_614657.1| penicillin-insensitive murein endopeptidase [Ruegeria sp. TM1040]
MRLLRHITLAAFVLAACAPAQDSPRPSAAAFANKAASSTVPAKQLFGAKRGPSAQRPAPLGSYAKGCVAG
AAQLPETGPTWQAMRLSRNRNWGHPETIDFIQDLSRVAARQPGWQGLYVGDISQPRGGPMLSGHRSHQIG
LDADIWMLPPDRLDLSREARENISSISLRRASGAYVNDNWSAQHHAILKAAASDPRVARIFVFPGAKVKM
CDTETGDRSYLRKIRPWWGHHYHFHVRLNCPRGTRGCVEQDPPPRGDGCDDARQWVANILNPPPPKPVDP
NAPKPKPRRDYTLSDLPQQCAAVLSSD
>gi|99082504|ref|YP_614658.1| hypothetical protein TM1040_2664 [Ruegeria sp. TM1040]
MRRRSFIRLASVAIGLLVALCAAALAASTVWSVTHADSNSARLVSSYRWHEDAPWFGGMSGLELSEDGTR
FVAITDRSHLVKGEIIRQDGDITGLRMTEQHRLRNAGGARMPEDVEDSEGLVVQGAQMFVSFESPHRVLE
YNATEVRQLPSPRGFRRFSFNASFEALAQSPEGDLVLIAESPPRNKNVSRVWRWSGAEGWQGLGPYPEAD
GFLPVGADFGPDGALYVLERKFAKIGFRSRLRRFDLTAKGLGGGEILLNTPLARHDNLEGLSIWRTPSGN
LRATMISDDNFFWVQRTELVEYDLPARP
>gi|99082505|ref|YP_614659.1| hypothetical protein TM1040_2665 [Ruegeria sp. TM1040]
MTRTYLPGVLAMAAVVVASNILVQFLFGNWLTWGAFTYPIAFLVTDVTNRVYGAGPARKVVLAGFVVGVI
CSLIGTQIMGEFGPLVTLRIAVASGLAFLLAQLTDVAIFASLRGGKWWRAPLASTLIGSSLDTAIFFTIA
FSGALTFLEPANDVSWAGEMLPLLGAGPVAPLWVSLAVADWLVKLSLALIALIPFRLIVARLTQGQPSKA
>gi|99082506|ref|YP_614660.1| peptidyl-tRNA hydrolase domain protein [Ruegeria sp. TM1040]
MLRINDDITLQDWELTESFMRASGPGGQNVNKVSSAVELRFEAERSPHLPGPVKTRLRRIAGRRWTNDGA
LILQCDETRSQARNREIIRERLAELIRRALIKPKRRIATKPTRGSVERRLKAKKTRAEVKSLRGRVDGD
>gi|99082507|ref|YP_614661.1| peptidase S58, DmpA [Ruegeria sp. TM1040]
MKPGPRNLITDVTGLRVGNAADARLKSGTTVLTADQPFTAAVHVMGGAPGTRETDLLAPDKTVPAVDALV
LSGGSAYGLDACSGVVDGLRAMGRGFRLGPAIVPICPGAIIFDLLNGGDKDWRDNPYPALGRAALRDASA
EFALGTVGAGTGALTGMQKGGLGSASLVLENGLTVGALVVVNPIGSVTTPGERHFWAAPFEIDGEFGGLG
PDPSAGIGRSLRSRKMEAMAELAGAAVSSEGSNTTIAIVATDAALTKAEATRMATTAHDGMARAILPSHG
PHDGDLVFAAATGAQSMTDPAADMLALCHAGSLCLARAIARAVHAATPAEGDILPCWSDS
>gi|99082508|ref|YP_614662.1| hypothetical protein TM1040_2668 [Ruegeria sp. TM1040]
MSATVVQSNVLGILAAIGAAVAFSVIDVTFKFLSDGYPLYQVVFIRSVVALVLLLAVIIPLEGGVKILRT
QNIRLHGLRVTAVVFANITFFSGLAVLPLAEAVAIAFATPLIVTLLSVLFLKERVGPWRWGAVMVGFSGI
LVIVKPGMAAFQPYALLPFLGSCGYATLHILTRRAGGSDKAATLSFYPTLGFLIVSALAGLVFGHGQWAT
GVPLWDVVLKPWAWPKGIEWVIFAVAGVSGAVGGYLVGQAYRLCEAGLVAPFEYVAMPLAVVWGVLVFAE
WPEPSVWLGSALIIGAGLVSLWRETRTPGPPPRPRPRSSG
>gi|99082509|ref|YP_614663.1| HAD family hydrolase [Ruegeria sp. TM1040]
MPITAVVFDIGRVLIEWEPERFFDRLIGEPRRHALFQEVDLHGANLDVDRGYPFRETIYGLADKHPDWAA
EIRHWHDSWIEMASPEIPHSVRLLRALKAKGVPVYALTNFGAETFVIAQTHYPFLREFDQAFVSAHLRCI
KPDAEIYAHLEAGTGRRPDELLFTDDRPENVTAAAVRGWHTHLFDRPETWAARLVDEGLLTQEEAQ
>gi|99082510|ref|YP_614664.1| ornithine cyclodeaminase [Ruegeria sp. TM1040]
MSLTQIGFDEGEALLEWVALTDALAEGHRRPKAEVGDTFLYRGKDTLLSRSAWIDGLGIAVKTAMIFPDN
PTREVPMINGAVSLFDDATGQPEALVDFHLVTKWKTAGDSLLGARRLAHPNAKEILIVGAGTVAASLIEA
FSAVWGDAQIRVWNRTIAKAEMLATAYPGVAVAPDLEQAVTAADIILTSTMSTDPVIQGAWLRPGQHLNM
IGAYRPDMREADDLALSRARIYCDSFDTTLDHIGEFKIPLASGAMQRADVLADFYALDRFGRFDPEAITL
FKNGGGAHLDLMTSRHVLDLWTQQT
>gi|99082511|ref|YP_614665.1| alpha/beta hydrolase fold [Ruegeria sp. TM1040]
MIWFLSAVLCLGALLFLPALQETLRRPLTESMRRNAPGKFAELSQGQTHYRWIGPLRGPVVVCVHGITTP
SESFLPLAQELAEMGYRVLLYDLYGRGYSDYVPGLQDRAFLLQQLDDLLAYEGIVEDFVLVGHSAGGAIA
TAFAAANIWRVRSLILVTTVGLHKPRTPMAEFRKHAHGIQDLILRWSYPIVARRYVKGVFSDPRTPDAVR
QAQQAQLSRRGYMPSNLAAIRGILRDDFAEEQKLFNRQGLPVLAIWARDDVIIPPQTSGRLAELNRSAKQ
EVVEDAGHEVVYTHAGDVARLIAENQRRGL
>gi|99082512|ref|YP_614666.1| major facilitator transporter [Ruegeria sp. TM1040]
MDRSTPLFTPVLLVGCLIIMVSFAVRASFGVFQIPIADDFGWLRSEFSLAIAIQNLAWGIGQPIFGAIAE
KIGDRKAIIIGAVVYAAGLVLSAGATTPFEMQAYEWLVGFGVAGTGFGVVLAVVGRASSDENRSMSLAIV
TAAGSAGQIFGAPTAEYMLGLMSWQSVFLVFAGVVLALILSLPLMRAPVSAGKAELEESMGAILKKAFRD
PSYTLIFLGFFSCGYQLAFVTAHFPAFVTEMCGPIMPGGVLHGMGITTTSALGAVSISLIGLANVAGTLL
AGWAGKHYSKKYLLAGIYTARTIVAGAFILLPITPLSVILFSVAMGSLWLATVPLTSGLVAHIYGLRYMG
TLYGIVFLSHQIGGFLGVWLGGRMYDIYGDYTMVWWIGVGVGAFSAIVHLPVRERPLQAAAA
>gi|99082513|ref|YP_614667.1| AFG1-like ATPase [Ruegeria sp. TM1040]
MTDLYQARVDAGQIQPDPAQQAVLPEFDRIADGLRAEPVKRGLFRKAVRPEVKGLYLWGGVGRGKSMLMD
LFVESLDDIPSRRVHFHAFMQEIHAKMHLAREAGTEDALAPVVADVVASVRLLAFDEMQITDITDAMIVG
RLFEALFEAGVVVVTTSNRVPDDLYKNGLNRQLFLPFIDLIKDKMQVHEMVSPKDYRQDRLTGSRVYFTP
LNAEVRAEMDAIWRDLTGGAAEPLVLMVKGREVTLPAYRNGVGRATFYDLCGTMLGPGDYLAVADAVKVL
VLENIPALGRNNFNEAKRFVTLIDALYEARVRLICSAAAEPEFLYMEGDGAFEFERTASRLREMQDKDWG
QPKA
>gi|99082514|ref|YP_614668.1| DeoR family transcriptional regulator [Ruegeria sp. TM1040]
MNATDLSERQRDILRLLEQSGFATIEDLAGRFGVTTQTIRRDVNDLRDRALLMRVHRGVRPHEGARPYAS
RAVEQQREKAALAREVLRLIPAGASVSIGLGSTPAEVARLLAHAGGRDVITNNLVAASHLWDAEDITLSI
CGGAVRDRSVSGSAAAEFFAAYRVDFAIFGVAGVDDDGALLDFRTEEARARAAMQTHARQSVLVLDQVKF
QRRAPARGGWLHDPDYVVTNAPPPKALAAGLCAGALVLISEAP
>gi|99082515|ref|YP_614669.1| FolC bifunctional protein [Ruegeria sp. TM1040]
MTEQTSDAILARMMALHPKIIDLTLDRVWRLLAALENPQDKLPPVIHIAGTNGKGSTQAMIRAGLEGWGK
SVHAYTSPHLARFHERIRLAGDLISEAHLTEVLDECYSANGDASITYFEITTVAGLLAFSRTPADYTLLE
VGLGGRLDATNVITPEVSVITPVSIDHEQFLGNTLAKIAGEKAGIIKRGVPVVVGPQAEEAMEVIEDTAM
RLGAPLIAYGQHWHVHEERGRLVYQDERGLLDLPLPNLMGAHQIQNAGAALAVLRHLGADEAACEAAVVG
AQWPARMQRLKTGPLVEIAGAAELWLDGGHNAAAGIALADVLAKLPKRPTHLICGMLNTKDVTGYLRPLA
AEAQSLTAVSIPGEAATLSAEETKAAASSVDLPATTAESVAEALTAILARDPDSRVLICGSLYLAGNILR
ENG
>gi|99082516|ref|YP_614670.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [Ruegeria sp. TM1040]
MNWITNYVRPTINSIFSRREVPENLWKKCDECGTMLFHRELSDNQNVCTNCGHHMHITPRDRFKALFDGG
VFAEVKVPEPVVDPLKFRDQKRYPDRLKAAQKTTGEKEAMLVATGEIGRTPIVAAAQDFSFMAGSMGMYV
GNAIIAAAEEAVKLGRPLVLFSAAGGARMQEGILSLMQMPRTTVAVEMLKEAGLPYIVVLTHPTTGGVTA
SYAMLGDVHISEPNALICFAGPRVIEQTIREKLPEGFQRAEYLLDHGMLDRVTPRTKLREELITIIRMMM
KLPPQVHGDLPAPAPEAQLEAPQKDEKAPAEDASGADKSA
>gi|99082517|ref|YP_614671.1| abortive infection protein [Ruegeria sp. TM1040]
MRCYRPHEILLHQARPTAEVWRLALGMVLVVLTWFGLGLISDLVLLPGVLALTGEADLAGGSDPAGMAIL
LGHFIFMIIAVGLVLQMLHGRSLGGLLGPRALVIPQGARVLRMLVILLVVLMLLPPYDMGAPLEPNLAFG
PWLALLPVSLVLVLIQVSAEEILFRGYLQQGLAARFSSPLVWLVLPSLLFGMGHYMPEAAGENAWLIVAG
ATLYGMLMADLTARAGSLGPAIAVHFVNNVWALLFVASPSNLSGLALYLHPYAMDDPLALRPWLWVDLMV
MLVTWLAARLAIRA
>gi|99082518|ref|YP_614672.1| cyclic nucleotide-binding protein [Ruegeria sp. TM1040]
MEPSLFSFIWRYSKRQQFGLLLLTLMTFPFLYATLELPKRIINDAIGAPSAWIDLWGWRLSAQQYLLVLC
FAFLGAVLASGMMKMRLNTLKGILSERLLRRLRYQMIARMMRFPTNHFRTTSQGEMVSLITSESEPMGGL
MGDAVAQPVFQAGQMLTIVSFLFIQSVWFGLASVALIPLQAWLIPMLQRQINLLNKDRIAEVRALSAEIG
ETAAGLQDLRSNGGWRYRLAQVSDRLGRLFEIRRRIYMKKFFMKFLNNLIGHLTPFFFYSVGGVLALRGE
ITVGALVAALAAYKDLSAPWKELLTYYNQVQDMSLRWQIMTEKFSPPGMIDPALFEGVPQKVPHLRGDIE
LRDVTVRDAEGKPVLDGLTLTIPAGAQVAIQSSSAAERQALAQLLTREVLPTRGEVIVAGHPLAELHQGV
IASRIGYAFNAPYLFDGTLGDNVLMPLRNQPRATAAERQLLQRAEALKAGNSGDPVNADWVNPDLAGLRS
EHDLRDWWFQLVEAMGIDGQLFHRTLHARLQDRHRALEAQITALRPRIAERLEAQGLRDVVYRFLPDLYN
PALPLAENMMFAFPVEPVPPTLFTDPDGPFQRVLRAEGLESQTRDISLALIDTLQRTFGRGQTSHPLFRR
LNLDEELYARIVKAADRYREGRVLDGTDRALLCTLPFLLTEEQLGAGLPRDYKLRILGIRNRRGDLLLAD
CGGVYRRLRAGEYARKLTVLENALFGRISIHAGGKAQAVEDVVADVMADNDLKARLALMIYDLPTGLGGA
LLEPVFRERAAFTRAAIKRPDILILDHVLASHDSDNRLKTRNRLQALLPKTTMIHLEDHFEHPSRYDLHL
TLRDGRIDGQSGVATVLLDAPEEAEDDFDRKLSEIGSADLFARLDARHRRLLAFSASWVRVPTGAAVFRA
GEAGDAVYLCLSGQAELQFPEDGSALDMIAPGRLIGDLAVITAAPRQLDLFAVEDCVFLRIGAEEFRTVI
ESDITVALHLLQTVSGHLSSAAVALQDARSAQGSAEP
>gi|99082519|ref|YP_614673.1| hypothetical protein TM1040_2679 [Ruegeria sp. TM1040]
MNQTLINILGASRALLLKALRLPRLGLLLLVPLALAGCMEGNRLAFAPPGESVSRPVDSRGRSLTAVFGD
GQLILAAPSGFCFDAEMEQHTGSGGFALLARCEKMGTFGRLRGKDGAMLTATVGAVSADTPAPSTEALRS
AFTEARSAARVLETRGDGDIPLIKLHMASHSAKGASGTHWRGAFLVHGHLVSVALYAPEGSGYLGERGAR
LIREFVQATRNATLLAETAAPTETAPQRTLRPQDRSGAVLAQAAAAPQE
>gi|99082520|ref|YP_614674.1| hypothetical protein TM1040_2680 [Ruegeria sp. TM1040]
MGKLLERVLNTGALRRWRRAARAAPSTPLARLRQQRNDARKLRMHLDQLIHTADNRLALPKIDSSYFPRP
HGTDWSWRPELWRGPLPVAGVSSVPSKTRLGHEIQMFHDCAISELTLRQLRNTREEDLAPYGLRMDVFKF
DGSFLSLVIDLPAEATQGLTRQHLVRLDCIAESEKPIEIFARLNIKHGPNTEQLVRELPPGEKTFSVEYD
LAYSRLNEKRIEKAWIDLIFEAPDMNQVVLRDLTFARFLRANL
>gi|99082521|ref|YP_614675.1| hypothetical protein TM1040_2681 [Ruegeria sp. TM1040]
MSAMTLQKIRFRSGLWEGRIETAPRADARPQIVVRYLDREVGGVTLEAAEAPGSWALTIPVPSEAIGDGV
QSFVIIDAETDTKIGDFTLIAGEPLADDLRAEVELLRAELDMLKRAFRRHCLETT
>gi|99082522|ref|YP_614676.1| DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada [Ruegeria sp. TM1040]
MMMFDLPDSKTLYDALVARDASYDGRAYVGVSSTGIFCRLTCPARKPKYENCQFFATPGACIEAGFRACK
RCHPLNAAAGNDPLVRRLLEALEARPFYRWREEDLVAMGADPSTIRRAFKRQFGMTFLEMARQRRLREGF
TTLSAGQPVISAQLEAGFESPSAFRAAFARLVGIAPGQFRKDAQLLADWIETPLGAMVAVACQHKLHLLE
FADRKALPREVAKLQKRQPGGIGFGRPEVVDQAAEELGAYFTGRAARFDTPLAYHGTAFEADVWRALREI
PVGQTRSYGALAQSLGRPGSSRAVARANGANQIAVMIPCHRVLGADGALTGYGGGLWRKQRLIEIERDLS
AATG
>gi|99082523|ref|YP_614677.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Ruegeria sp. TM1040]
MSAALKLTNLSKTFPVGKRLFGGAKAGVKAVQPLSLTVEQGETLGIVGESGCGKSTLARMLVGLLPPTTG
QIELEGAPLDNADPATFGQKIQYVFQDPISSLNPRKTIRQVMDAPLRHLHGMDAKARAARIAEIFAAVNL
REEFLDRYPHEFSGGQAQRIGIARALAADARILILDEPVSALDVSVQAQVLNLLADLKRTFGLTYIFISH
DLAVVEAVSDRVAVLYFGSVVEVGPANEVFAAPRHPYTRLLAQSAPVVGRALAAPEAKETELPDPLNPPK
GCAFAARCALASDLCQSTAPTLEPQSDRVAVACHHPID
>gi|99082524|ref|YP_614678.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Ruegeria sp. TM1040]
MSFLRLLSRNRLALAGLIVMSVVLLLAVLTPILPLPDPDVTNTAERFKKPFSEGALLGTDHLGRDLASRL
MWGTRLSLAVGFAAAVAAATIGAAIGVIAGFYGGRVDNVIMRGVDMLMGFPYILLALAIVAALGPGLMNA
LIAVAAVNIPFFARNIRGVTVGIAHKEFIDAARLCGMSNARIIITEVVPNVIPVIVIAMSTTVGWMILET
AGLSFLGLGSQPPQADLGSMLGEARSALITNPHTSVVPGAMILVIVMAINLLGDGVRDALDPRLKSGALS
RPMPTTMVRRTDPVPQPEGDGILSLCNLQTQFHIKDRIYKAVGGVDLSVRPGECLGIIGESGSGKSVTAL
SIMGLVASPPGVITGGAVHYKGEDLIGAPYETLRRLRGDRVAYIFQDPLATLHPLYTVGAQLIEAIQSHH
RTSTSEARARAIELLKSVRIPNAEARVDNYPHEMSGGMRQRVGIAMALANDPEVIIADEPTTALDVTVQA
QILALLDDLRRERGLAIIFITHDFGVVAQLCDRVAVMYAGRIVEEGPTDAILNAPAHPYTARLMACVPEL
GQGRRELAAIPGLPPVVDKLPAGCAFADRCPKAAKACRSGDIALDGFGAGRKIRCIDPEIPVQEATA
>gi|99082525|ref|YP_614679.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MTGYILKRLISAVPVLLGISVIVFLIMAMIPGDPATAILGSYATPENVEKLNRDLGLDKPLVQRYFIWLG
NMLQGDFGRSFSLNRAVLDEVLERFNATLVLAGTSFVICSILGVAAGVVSAARQYGLADKAITFAVLLGI
SIPSFFLGMMMILIFAVNLRWFPVSGMWPIYGARDLSALVSHLTLPAIALAVVATGVIARLSRSAMLEVL
RQDFIRTARAKGVHERSVIWRHGLRAAMVSIIPVLGIQAGFVLSGAVYIEMVFQWPGVGRMLVDAILKRD
ILLVQGGVVFVAACYVLFNIAVDVAQSLLDPRIKA
>gi|99082526|ref|YP_614680.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKLLGMTRRGAMAAMLATTAMAGVAMGVAPAAAQTPPGVLIVGQIAEPKALDPAAVTAVNDFRILMNVYD
GLVRYKDGTLEVEPALATDWSISEDGTEYTFTLREGVSFHDGSAFDAEAVVFNFERMLNEDHPYHNTGPF
PLAFFFSAVESVEAVDDLTVKFKLNAPYAPFLSNLAYPTGLIVSPEAVKTHGAEFGRNPSGTGAFKFAEW
RSNEAVVVEKNPDYWDGAAELDAVVFRPITDANTRTAEMLAGGIDLMVEVPPVALSEFQGDAFTVHEQAG
PHVWFLILNAKEGPFADKRVRQAANYAINKSAIVNDVLEGTAEVAAGPTPPAFAWAYNETLEPYPYDPDK
ARELLAEAGAEGAELTFYVTEGGSGMLDPIAMGTAIQADLNAVGLDVKIETYEWNTFLGEVNPGLEGKAD
MAEMAWMTNDPDTLPFLALRTEAWPDKGGFNSGYYSNPKVDELLEAARVATDQDERAKLYQEMQTIVQED
APWVFVANWKQNAVTSDRVGDFALQPSFFLLLDDVTKN
>gi|99082527|ref|YP_614681.1| hypothetical protein TM1040_2687 [Ruegeria sp. TM1040]
MTFSILMYDRETGCYAAAAATGSLCVGGWVLRGDIESGLVASQGTAPSTFWRDDVLRRMYDGALAHAAVD
QVTGGDAGRGHRQLLALDRKGGTAGFTGAQSVGYADHIAEQDLAIAGNMLAGRQVLTAMRETARGEFATP
SDRMLAVLDAAAAAGGDARGLLSAALLVLSPDRPPLDLRIDHSDDPLPALRALCLRAHRAPYYDWLTEVP
VLKDRHRAVLPDAS
>gi|99082528|ref|YP_614682.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MMNRGLYPCRFPVYVFIMIKERQVMSNKSRTPEQPKRSRPVRVAEEIKTWVVERDLQQGDKLPNETEMIA
QFGVSKGTVREAMRILEAQGLIITRTGPGGGSFVDKVSAERARSLLANYFYFQNLSIADIYQMRRALEPE
LAASLAGQLDEAQLGEMESLAARYPEPAQSAEEEKEQHIASLEFHARLAEFSGNALLGFVISFMARVLTD
MTIYRKLYDPPNLELWRRGRAHQMQLVQALRDGDAAAARRIMASHMQGAEEQMRSQEAQLARRFIGEQR
>gi|99082529|ref|YP_614683.1| allantoate amidohydrolase [Ruegeria sp. TM1040]
MDWGQEAQQRLAKIAACSAAGPGVTRLPYTPEHSAALEQISDWMRRAGLHPQLDAAATLVGRSSAPSNEA
AVLIGSHQDSVIEGGRYDGIMGIVIGCLALERLASEGTRLPFPVEVLAFADEEGVRFPTALVGSRALAGR
FDPSVLDMRDGEGVTLRTALSEFGGRPDKIASEARNKNAVRAYLELHIEQGPMLEQDNAAVGIVTGICGI
ERNSVSFVGETGHAGTVPMQGRRDALVAASEFVVKIHDAARNIDGLRATIGTLALKPAAVNAIPREAALT
LEIRALSDAARQEFAGAAQVIGTEIAAKRDVSFDMAKTYEQLAVPCASGLIETLELAARDAGQHAPLLPS
GATHDASAMADLCDISMLFLRCKDGFSHRPEEYTSAEDMAAAIDVTCAFLRRLAAE
>gi|99082530|ref|YP_614684.1| hemolysin-type calcium-binding region [Ruegeria sp. TM1040]
MLHSARKRQHRPGCSVLAVKALPVSIGKWYECKHEMTTYVVHGTNYNDPSFWASISEGSPGHTLDFTGLP
PNYEININAEAKTISIWDGTSWYSVGESGNTGTNATLGSPTLVDDFTVILANNSDDYIEGSDNNDSLTGG
TGNDTLSGDQGDDTLRGGDGDDYLTGGEGNDNIDGGTGNDTIRGDNAWTNTSSGASGASTTPTTLTVTNS
ADGPIELWWIDETGTAQYYATLQPGDTRNQSTFEEHNWILRHPDGWYLEYIEGAPNQTVNFGSAGLNDTV
YAGAGNDLIDGMYGDDLLYGEGNNDTIYGDYGSDTIYGGAGDDLLYGGDGDDTLAGGTGSDTMYGGAGND
SMVGFDDADTFILEDGFGNDTIVGGEGGTDDDFVDLSNLTSGVTVTYTGDEAGTITDGSNTAEFSEIERI
RLTDQADVLDASASLVGVDVDAGAGADTLTGSAGDDSLTGGTGDDRFVMTTSGGTDTVGDFDLGDADLDG
FYNDQIDVSGLSGGSGAGGLVTRADVVVTDDGSGNALLTFPNGEQLVLQGVAPAQISSYQQLYAAGIPCF
TPGIRIATARGAVPVEHIRKGDLLQTADNGFQPVIWTGRRDLSAAELRARPHLTPLRLRPGGPLANDRPL
LVSPQHRFMLGRARLGDMDHLHEAFVRTRLLQSLAPEDVTPCRPAAGVSYIHLMTEAHQVIFAEGVATET
FWPGPEALRGLSEGDRRELFDLFPELFLAGGLCGGTGRHFVARAYCPLARVDLKRRDLRALGARSAA
>gi|99082531|ref|YP_614685.1| hypothetical protein TM1040_2691 [Ruegeria sp. TM1040]
MLKNDQLDQWDRDNFFHPSTHLAQHARGESANRVIKTASGVFIEDRDGTKLLDAFAGLYCVNVGYGRQEI
AEAIADQARELAYYHSYVGHGTEASITLAKMILDRAPKNMSKVYFGLGGSDANETNVKLIWYYNNILGRP
EKKKIISRWRGYHGSGLVTGSLTGLELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEEQFVAHCVAELEA
LIEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTMFGSDHYGLE
PDIITIAKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPIGAAAGVANLKLLDELNLVS
NAGEVGAYLNATMAEALSQHANVGDVRGEGLLCAVEFVKDRDSRTFFDAADKIGPQISAKLLEQDKIIAR
AMPQGDILGFAPPFCLTRAEADQVVEGTLRAVKAVLG
>gi|99082532|ref|YP_614686.1| succinate semialdehyde dehydrogenase [Ruegeria sp. TM1040]
MSLSALSARAEISDKALVRSFSYINGKWCASSNGEVVAVHDPATGDFIGDVTAMTAEDSSAAVDAAHAAF
TSWALMLPQDRCALLRRWFELMIEHKEDLARLMVLEQGKPLSEARGEIDYGAAFVEFYAEESKRPNIEGV
TSHLPDAEVELWREPVGVAALITPWNFPSAMLTRKAAAALAAGCTVVAHPSAETPFSALALAELAERAGI
PKGVFNVITGKAPVVVEPWTRDARVRALSFTGSTEVGKLLYRQSAETVKRLVMELGGHAPVIVFKNCDLD
RAVAETIKAKFATSGQDCLGANRIFVERDIYDEFCTRFVAATQALSVGKGIDDPDIGPLMNEKAVQKQEE
HVADALEKGATLACGGKRHALGPLFYEPTVLTDVPADALILHEETFGPVAPITPFDSEDEVIQRANDSEY
GLVAYVHSHDPRRIYRLSRALQFGMVAVNRTKVTGAPIPFGGTKQSGMGREGARLGMEEFTEVKYVCRDW
A
>gi|99082533|ref|YP_614687.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MHLDQRDLDILRILSRDGRITKAALADQVGLSPTPCWERLKKLEKAGLIEGYNAQINLKKIAPHVTVFVA
AELADHTAASFQSFEAAMQRYDEVVACWALGGGFDYLLQIVTCDIDAYQRLIDAMLDARIGLSRYFTYIV
TKPVKGAGVPPLEILLRGS
>gi|99082534|ref|YP_614688.1| succinylglutamate desuccinylase/aspartoacylase [Ruegeria sp. TM1040]
MKDNPISPTIPLDQDGVHHGFLKLPYSRDDSAWGSVMIPITVIQNGAGKTALLTGANHGDEYEGPVALQE
LAATTRAEDVTGRLIIVPYFNYPAFRASARTSPIDRGNLNRAFPGRPDGTVTQKIADYFQRTLLPMADVA
VDFHSGGKTLDFVPFAAAHILEDKVLQDACFAAMQAFNAPYSVQLLEIDSEGMYDTAVEEMGKVLVTTEL
GGGGMSTARSNAIAKKGLRNVLIHFGILQGEMQIDPSVTLDMPDGDCYLFSEHDGLFEIMIDLGEPVQEG
DLVARVWSPDRTGEAPVEYRARRSGVLISRHFPGMIKSGDCAAVIGVVEG
>gi|99082535|ref|YP_614689.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MDRNPASPAASDHSDDTPRLAVEIFVQPGFSQLELSLILAVFEAANAMETGIWFSVRITSDSPGVVTGGA
GMMVRAEPAIGLQYLQDLMFVVGGRNCSGGSWLARARAMQKLRRPVFLLSDAATAYIRRCAPLSGPATTH
WQDLRALRETGEYPTLTDSLVAENAGILTSAGGGYTAEMVVRHLSQILAPQHCAELASVLMIETARGYSG
EQPKGAARNTNLLEARLVRAMAIMEECIEYPLSTAEVAERAGISVRHLERLFLTHLNTTPAKHYMQLRLK
LANKLITDTNLPIAEIAFASGFASSTSLSRAYRREYNMTPYQVRARDRAGAGLRAD
>gi|99082536|ref|YP_614690.1| CHAP [Ruegeria sp. TM1040]
MQGRALGDWRNLATGQQAYWHTRLFDRMLRRITNVTTTPECPLQTIARTLRLNPILSGLLLISALALSAC
GEGPRSGNDQIDPARLAFAMREAESLRSRGARVWCVPFARNLSGVEIRGNARTWWKQAQGRFEVGKTPEV
GAVMAFSATRSMPLGHVAVVSEVVDDRTLRIDHANWHRNKVSLGMAVIDVSDRNDWSRVRVETNPGAFGS
VYPINGFIHPNS
>gi|99082537|ref|YP_614691.1| PRC-barrel [Ruegeria sp. TM1040]
MKTLLMSTALMAATSTVAVAETPKFMASADPLAIQASEFIGQQIYTTPSEVDAEGYEGLQQEWQKIGEVN
DIVLSRDGNIQSVLVDIGGFLGIGERQIAVDMNVLQMVPDSATPEDSTDYFLVMQADVAEFETAPAYEHS
GMSDFSDRAEQAVKTTSAALKNTADDLGNTAQGVAERVGEAISNTMDDVKEITAEVTSDWQDKGYEPIEG
ANLSAERLTGTPAYGIKDDWIGEVSDLVMSESGDISHAIIDVGGFLGIGETPVKLELSQVTVLQEVGGDA
LRVYVPMSSDKLKGIGAYES
>gi|99082538|ref|YP_614692.1| IclR family transcriptional regulator [Ruegeria sp. TM1040]
MDSQENASRATRRARGRPRDWHDKTAQNTIKSLDRAMEVFEYLSQAQGKPLTMIAEEMGQSPATVYRILV
TLEGRGLVDFDAEEQLWHIGAQAFVIGARFLRRTSLVDRARPILRRLMEDTGETANLGVEKEGHVLFLSQ
VETHASIRAFFPPGTLSQMHASGIGKALLAEMDGSRLDRLLAATRLEIFTDHTITDPEALKADLAAIRAQ
GFAVDNEEKNAGMRCIAAPVFDMNREAIAGISVSGPTSRISVESIAELSRPVIEAAQQLTVAIGGDPAAL
>gi|99082539|ref|YP_614693.1| serine-glyoxylate aminotransferase [Ruegeria sp. TM1040]
MSFQNPVFIPGPTNIPESLRKACDMPTIDHRSPLFGQILHPAREGVRKVLKSDSAEVFIFPSSGTGGWET
ALSNTLSPGDTVLAARNGMFSHRWIDMCQRHGLEVEIIETPWGEGLPADRYEEILTADTSHKIKAVLATH
NETATGVKSDIAALRRALDAAAHPALLFVDGVSSIASMDFRMDEWGVDVAVTGSQKGFMLSAGLAIVGFS
AKAMDATQSARLPRTFFDVHDMAKGYANNAYPYTPAVGLMNGLNESCKMLLAEGLEDVFARHHRIAEGVR
AAVGAWGLELCAATPEVYSDTVSAIRTPEGFNATDIVTHAAEKYGVAFGVGLGEVAGKVFRIGHLGSLTD
VMALSGIATAEMCMVDLGLDIRLGSGVAAAQDYYRGHTAAAQKDAA
>gi|99082540|ref|YP_614694.1| pyridoxal-5'-phosphate-dependent enzyme, beta subunit [Ruegeria sp. TM1040]
MKDTAMYIPTYEDMLAAHQRIAPHIHRTPVRQSAYLNELTGAQLFFKCENFQEPGAFKVRGATNAVFGLD
AAQAAKGVATHSSGNHASCLSYAAMLRGIPCNVVMPRTAPQAKKDTVRRYGGKITECEPSTTSREETFAR
VQAETGGDFVHPYNDPRVIAGQGTCAKEFVEQTDGLDCVLAPIGGGGMISGTCLTLSTLAPETRIIAAEP
EQADDAYRSFKAGYIIADDAPRTIADGLLVPLKDLTWHFVSNHVSDILTASDPEIIDAMKLIWKHLRVVM
EPSSAVPLATILKNPETFRGKRVGIVLTGGNVDLDRLPWTI
>gi|99082541|ref|YP_614695.1| D-3-hydroxyaspartate aldolase [Ruegeria sp. TM1040]
MNAPANFDSLEVGFDVPALPGMDEADIQTPCLVLDLDALERNIKKMGDYARAHGMRHRVHGKMHKSVDVA
KLQERLGGAIGVCCQKVSEAEVFARGGIKDVLVSNQVRDPAKIDRLARLPKLGARTIVCVDDPANVADLS
AAAQKHDTEIECFVEIDCGAGRCGVTTTEDVVEIAQAIDAAPGLKFTGIQAYQGAMQHLDSYEARKEKLD
VAIAQVRDAVEGLKAADLAPELVSGGGTGSYYFESNSGVYNELQCGSYAFMDADYGRILDQDGKRIDQGE
WENAFFILTQVMSHAKADKAICDAGLKAQSVDSGLPFIFGRTDVEYVKCSDEHGVIADPDGVLKVGEKLK
LVPGHCDPTANVHDWYVGVRNGKVETLWPVSARGKAY
>gi|99082542|ref|YP_614696.1| ornithine cyclodeaminase [Ruegeria sp. TM1040]
MYIVPERVIADLMTREAAFDAVEKVFAAMAAEDAYNFPVVREAIGHEDALYGFKGGFDRAGLTLGLKAGG
YWPHNLEKRGQINHQSTVFLFDPDTGKAHAMVGGNLLTALRTAAASSVSIKHLARDDAKVIGMIGAGHQA
TFQLRAALEQRNFEKVIGWNLHPEMLPNIEAVAAEAGLPFEAVELDGMRAADVIISITSSFEASLMADHV
SPGTHIACMGTDTKGKQEVDPALLVRAEVFTDEVAQSVGIGEAQHAVAQGLIEAADLTQLGAVINGAHPG
RSTDDQITLFDGTGVGLQDLAVAARVVELAVTQGIAMEVDF
>gi|99082543|ref|YP_614697.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MAYMESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTEAGKRFYREAL
RILDVVEEAESVVAQFSGRPRGTLKITAPLAAGRRIIAPLVPDFVDRHPEIDVQMRMSDRRVDILAEGLD
LAFFVGTPSDSSLKMRKIASVDRVLCASPRYLERHGIPHVPQDLMGKHNCLLLRYPRSPEYFWTLNTGSG
FRKFEVSGKYDADDSEVLLNWALDHRGIVNKPRFEVAEHLRSGALVEILPEARPMAATFGCLYPHKKLQD
PKVRLLVDFITERGQSLLDALVG
>gi|99082544|ref|YP_614698.1| molybdopterin dehydrogenase, FAD-binding [Ruegeria sp. TM1040]
MAQGHDIRFLLNGVEKRVSDVKATLTLLDYLRLDQRLTGSKEGCAEGDCGACTVLVGRLHQGQLHYETVN
ACIRFLASLNGCHIVTIEHLSGPQGRLHPVQEAMVDYHGSQCGFCTPGFVMSLYALWMSNPEPSVQEVET
AIQGNLCRCTGYEPIVKAAMAVTQYGSPAHDHLVRERTDVTARLMALQPSARIVTGPEDDRAILPLDVAD
LAQVLAENPKATIVAGSTDVGLWVTKFMRPISPVVFITHLEELKSVEVTEEALTLGAGVTYSESEAAIRA
AFPHLGDYWDRIAGWQVRNMGTIGGNIANGSPIGDTPPVLIALGAEVVLQSARGSRVLPLEDFFIDYGKQ
DREAGDFVAAIRIPRAKPGQMDAAYKISKRRDEDISSVAAGISVCVTDGVITTARIAFGGMAATPKRAAT
AEAALVGQPFAAASFDAAAVALGQDFTPLSDWRASADYRMTVAANLLRRFYLEQDSTQGAPVRLAIA
>gi|99082545|ref|YP_614699.1| xanthine oxidase / xanthine dehydrogenase, molybdenum binding subunit apoprotein [Ruegeria sp. TM1040]
MKDLGNTTEIKGAAHQDLKHESAIKQVQGRADYTDDILEPAGTLHAYLGVSTVAHANIRGMDLSRVRAAP
GVVDVLTADDIPGVNDVSPTGKHDEPVFPTEKVEFHGQPLFAVIAESRDAARRAAELADVDYEVLPHALD
AISARDAGLPMVTDPLKLERGDVESGLAEAPHRLQGRVVVGGQDHMYLEGHIAFAIPGEDDDVVVHCSTQ
HPSEAQHMVSHVLGVPSNAVVVNVRRMGGGFGGKESQMNLFCAFAALGAKKLNRPVKIRPDRDQDMTATG
KRHDFVIDYDLGFDNEGRIEAVESQFAARCGYSSDLSGPVTDRALFHADNAYFYPNVRLTSCPQKTNTVS
NTAFRGFGGPQGVVAAERMIEEIAYALGKDPLEVRKANFYGQPGDGRTLTPYHQEVEDNVIGRIVEELEE
SSDYQARRAAIIAENTKGGIIRRGIALTPVKFGISFTATWYNQAGALIHIYNDGSIHLNHGGTEMGQGLN
TKVAQVVAEAFQVDFDRIKITKTTTEKVPNTSATAASSGSDLNGMAALDACEQIKARLVKFAAESRGVAE
SAVRFGPNQIRIGEEVVDFAAFIREAYMARVHLSAAGFYKTPKIHWDRAAGKGRPFYYYAYGASCSEVSI
DTLTGEYRVERTDILHDVGRSLNPILDKGQVEGAFIQGMGWLTTEELWWDKDGRLRTHAPSTYKIPLASD
RPRSFNVKLADWSENREMTIKRSKAVGEPPFMLGISVLEALSMAVASVADYRECPRLEAPATPERVLMAV
ERLKAGG
>gi|99082546|ref|YP_614700.1| hypothetical protein TM1040_2706 [Ruegeria sp. TM1040]
MQAEQLRAFLDAPGPVASLRLTRVRGSSPRNTGTEMYVRADALFGTIGGGQLEHLAIAEARKLLAAGNLS
DHLDVPLGPEIGQCCGGRVEIAITRMSASDKDAALRATEAQDNALPAVYILGAGHVGRALADLLQHLPVR
TVLIDQRQEELDQSSAQVERRQSAIPEIDVMNAPEGSAFIVLTHDHGLDFLLTSAALQRGDATYVGMIGS
ATKRAKFASWTQDHCDGLSVADLICPIGAGGSRDKRPAVIAAQVAAEVITALTSETAADHPQTGGTALHI
AAQ
>gi|99082547|ref|YP_614701.1| xanthine/uracil/vitamin C permease [Ruegeria sp. TM1040]
MRDGSYTYKLFHRSDFSAFWALFTDNLVNLMVLAGICQFVFQMPADIVYGRIVPGAGVAILAGIVAYVAL
AKRAAQAHGRDVTALPYGISTPVMFVYLFGVIGPIYWATNDPLLAWQVGIGAGFMGGIVAALGAVVGPWL
KRVTPRAGMLGTLCGIALVFIGSVPLATVFENPFIGFASMIIILWGLVGRFRLPYNIPAGLLALIVGTLV
ALMLGTSTLSLEGIGFYPPLPYLGDLIAGVQYLFANPELFLVLVPVQIYNFIETMNNVESAEAAGDHYPV
ATCQITDGVGTMIGAVFGSPFPTTAYIGHPAYKRMGAHAGYIIGVGAVIPLAAIFGLLAFLNNLIPVAAA
APVLVFVALSLITNTAHSVKTEHMAAVTIAMMPHVSAFLMVKWAALIGALGAVGVAGVPQLGDEALTSAL
LQQGAHFSGHLSLSQGAILTGLIWGAIVAYVIDGNFRAAGGFALAAAAMSALGIIHGASLHWPELTSVSG
GYLIAAAFLFIYPLFHKSDDLVNANVVLEDAPPQAAE
>gi|99082548|ref|YP_614702.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MDRFDALILEAIQTDARITAEALSKQVGLSPDACRKRLARLRASDVVESEITVLAPEQVGRGLLLIVEVT
LQNERMEDLDRFKAQMRAAPEVMQCYYVTGNADFVLIISARDMADYDDFTRRQFFADENVLRFRTSAVMD
RVKTGFSMPVLDRAD
>gi|99082549|ref|YP_614703.1| pyridoxal-5'-phosphate-dependent enzyme, beta subunit [Ruegeria sp. TM1040]
MPVTVSNPHRGQGLSLDAPFPCEDAGAVTRLLQRCPAHQETPLLSVPTLAAFCGVAKIHLKDERNRMGLG
SFKALGAAHAIARAAQEVVEGDSWTTALKGRTFVTASAGNHGLSVAAGAALFGAQAVIYLSETVPEGFAA
RLRAKGAEVVRAGADYEASMVAAETAAEENGWTLLSDSSWPGYTELPYRVMEGYLQMAAEVAQQVPEPPT
HILLQAGVGGLAAAVAAHARRVWGDAPQIIVVEPEAAPALVESIKAGAVVETKGPVSAMGRLDCKTPSMI
ALQGLARDADLFVTLTEAEAAAAVATLEAEGLATTPSGGAGIAALIAGLALPQDARVFAILSEGPEEGTG
DA
>gi|99082550|ref|YP_614704.1| peptidase M24 [Ruegeria sp. TM1040]
MPETSLIFPAAEYRGRVARLQEHMTAEGVDALLLTTAADVFYVTGFLTRFWESPARPWFVIVPVLGDPVA
VIPSIGAPLMQRTWIEQIRTWDAPDPEDDGRTLLIDTLTSLVPDHGNVALPMGLETHLRMALLDYHAVRS
ALAPRRVVDGTEILQRVREVKSEAEIAKIRSSCAIAGRAFDRVPEIAGAGRPLDQVFREFQALLLEEGAD
WVSYLAGGAGLEGYGDVISPAPSEPLVRGDILMLDTGAVREGYFCDFDRNYAIGPASDLAKRTHEALWCA
TQTCLEALRPGMLARDVHHILCDALRAKGATPGGGRLGHGLGLTLTEWPSFTPKDTTPLRAGMVLTLEPG
AITGADRILVQEENIVLRDSGAELLSPRAPAELPELL
>gi|99082551|ref|YP_614705.1| Asp/Glu racemase [Ruegeria sp. TM1040]
MMTPFPYEIAEDPRPRLGLIALQVDETIEEDFRVMFPRQAARLHVSRVPSGAELTPETIAGMEDDLPAAA
RLLPPAARFEVIAYGCTSGTGQIGVERVAELIQTGATTKAVSNPLSAAIAALNALGVSRVGIVSPYIDAV
AAPIRAAFVDAGLSVPDMLGFGEEVEARVARIAPRSICAAAHALGERSTLDAVFLSCTNLRTLDVIPLLE
QQLGLPVLSSNQVLAWHMAALAGLELDDLEVPGQLGKKAAQP
>gi|99082552|ref|YP_614706.1| peptidase M24 [Ruegeria sp. TM1040]
MTEFPLTAARLAALRTRMELTGTDLVALGPSSHMVWLSGVHPHGDERPVMLLVSQSYAGFLMPALNAAAA
RKDTDLPFHPWRDDEGPDAALAELLKACGATRPNLSVVLDETMRTDFSLRLLDALEAPRRRFADDTVSLL
RASKDDSEYHAIKAAHLTNDKAVKAAFAALKEGVTEREIVELIKSEYTAAGATLEFCSVCFGASGAFPHH
TPGDTPLARNSAVLIDTGCRLDGYPSDMTRSGYFGTPEEEYEEVFQTVEKAVQAALAVAKPGVVASEIDK
AARDVIAAAGYGDRFLHRTGHGLGIDIHEPPYIAANSDVVLREGNVFSIEPGIYLEGKFGVRLEEIVILR
EDGAEIFSEMPRDMVRV
>gi|99082553|ref|YP_614707.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKHLKTTLLASALMLPLAAPAVLADTPEGVLVVAQNIDDVVAIDPAQAYEFTSGELVTNLYDRLVQYDAE
DTTVLAAGLASEWVTDADAKTITFTLRDGATFASGNPVTAEDVVYSFSRVVKLNLTPAFILTQLGWTADN
IGEMVTGEGNTVTVKYAGDFSPAFVLNVLAARPASIVDSKLVQENEVDGDMGNAWLNANAAGSGPFTLQR
YAAGQMVRMQANPTYFNGAPKIDSVIIRHVAESATQQLLLEQGDVDLARNMTPDQVASLESGEIKVETYP
QAAVHFLSFNQKTESLTPPAVWEAARYLVDYKGMTETIIKGQMEVHQAFWPKGFPGSYDETPFSYNPEKA
KSILSEAGIETPITVSLDVINAAPFTDMAQSLQASFADAGINFEILPGTGSQVITKYRERSHEAMLLYWG
PDFMDPHSNAKAFAYNSNNADDSYAATTTWRNAWAVPDALNEKTMAALTESDAEARLNMYRELQKEVQAE
SPIVIMFQAAYQVAMNEAVSGYVNGATSDFVFYRLVEKQ
>gi|99082554|ref|YP_614708.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MQREKPSTEPNVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQISAALDVGLDYF
ISASKPSDGLTRSGSRPLFALDDSSLRYEALGADFPGSEMSAYILHIPPGYVSETVHHEGEEIIFILEGE
IQQTLGGQTFSMMPGDSLHYSGDTPHAWSNPTDQNARILWTGTLTVLNRKGAIELPELSHKQST
>gi|99082555|ref|YP_614709.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MPETPTTASDAALTQSFHNARSPARRGFERKKGTRPLSTAAPSHAGLRKTASAFGGFVIVTFLTFVGLMA
ITFFIGRVIPIDPVLAVVGDRATQEQYDAARIAMGLDQPLVVQFITYVGDVFQGDLGHSVSTNRPVAEDL
ARVFPATLEMATLGIIIGVGMGVPLGVWAAARQGTWVDQLIRVFALLGYSVPAFWLGLVGLVVFYAGLGW
VGGPGRVDIFYEGLVEPRTGLLLVDSLIVGDWEVFWSALDHLILPATILGFFSLAYIARMTRSFMLDQLG
QEYITTARVKGVSEWRVIWTHGFRPIRVPLITVIGLSYAALLEGSVMIETVFSWPGIGNYLTVALLNADM
NAVLGATLVIGSVFILINKLSDVLYRILDPRSR
>gi|99082556|ref|YP_614710.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MTTMTNWLLDDSPSSRLQASLGHSYRVTRMLMRNPLAVVGAVILLVLILAAIFAPWIAPHSPLGQNLGQR
LLPPSAEHWMGTDELGRDIFSRVIYGARITLLIVALVAVISAPLGLLIGAVSGYFGGWTDKIIMGVTDVF
LSMPKLILALAFVAALGPGIENAIIAIAITSWPAYARIARAETLTFRNSEFISAMRLLGASHTRIITRHV
LPLCTSSMIVRVTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMISRGRAFILDQWWVATMPGFAIIIVSL
GFCFLGDGLRDVLDPKQGGKS
>gi|99082557|ref|YP_614711.1| ABC transporter related [Ruegeria sp. TM1040]
MSDMPLLELENLRVSFPTPQGRVEVVKGLSFTLGRERLGIVGESGSGKSMTGRAILRLVRKPGRQRADRM
IFDGIDLQKLSEGKMRDLRGARISMIMQDPKFSLNPVMTIGAQIAEALKTHESLARSEVKSRVLEMLHSV
RINDPERVVNLYPHEVSGGMGQRIMIAMMLIPRPDLLIADEPTSALDVSVQAQVLDLIDELVRDKGMGLI
LISHDLNLVARYCDRILVMHAGEVVESCAAEDLHKATHPYTQGLLAAVPRIEETREELPVLDRSAWSGT
>gi|99082558|ref|YP_614712.1| ABC transporter related [Ruegeria sp. TM1040]
MSAIILKNLDISYGHTKVVEGVNIEVAEGESFALVGESGSGKSTILKAIAGLAPDWSGEISVLGQPRGRA
VDQGFATRCQMVFQDPYGSLHPRKSVDTVLSEPLKIHGLGNRDTRVIEMLAAVGLDQRFRFRYPHQLSGG
QRQRVAIARALMLEPKVMLLDEPTSALDVSVQAEILNLLKKLRREQGLTYLMVTHNLPVVSFMCDRMAVM
NKGRIVEIAPATALHDGSFTDPYTQSLYAASGGNPDRKD
>gi|99082559|ref|YP_614713.1| hypothetical protein TM1040_2719 [Ruegeria sp. TM1040]
MTDTHTARLSFEKALSDATTQDQAYDALCALTKATVGAKLFTVMTADMDAMLARRVYTDDAENYPTTGTK
EIEMNRWFEQVHGRHETFVSNTLADIDTVFPDAELIGKLGCGSVINLPVILGGKMVATINILHEEGYYTP
ERVALAQEVLTLPAMAVLALAA
>gi|99082560|ref|YP_614714.1| hypothetical protein TM1040_2720 [Ruegeria sp. TM1040]
MSPRSPQRVGTKTRQRRHPMLSWALAFLVIALIAAVFGFGGIASASAGIAQILFFIFLVMFVVALILRAV
RG
>gi|99082561|ref|YP_614715.1| Ferritin and Dps [Ruegeria sp. TM1040]
MSNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNLTEEQYQNMFA
AADELAERIRALGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHMKLAHRLHALVELAEERKDMV
TGDLATERAAFHEKAAWMLRALSAS
>gi|99082562|ref|YP_614716.1| two-component response regulator [Ruegeria sp. TM1040]
MSTSTTGQALTLSDVITPHLPYLRRYARALTGAQQSGDAYAASTLEAILADPSCFDAQSAGGKVALFKVF
HTLWSSSGQPVLEADEGPRARALQHLSSLTANTREALLLNTVEAFSVGEVALIMDLSESEAAGLIQLARD
EMQQSVSGKIMIIEDEAIIAMDLEGICSMMGHEVTGIARTRKAAVKLGLEEKPDLILADIQLADNSSGID
AVADLLEELGDVPVIFITAFPERLLTGERHEPAFMIAKPYVPDQVISAISQAMFFASTDTLTS
>gi|99082563|ref|YP_614717.1| RNA polymerase sigma factor [Ruegeria sp. TM1040]
MDRQSAKAELTSHMKVLRAFAMSLTRNDAAADDLVQDTVLKAWSNLDKFQEGTNMRAWLFTILRNTFYSG
RRKAVREVEDSTGSITESLSVKPAHDGRLQLEEFRRALGELPVEQREILTLIGVLQYSYEEAAEVCGVKV
GTVKSRLNRGREALAAKMQLDANEQLELTDAATHAVVAANNGTAA
>gi|99082564|ref|YP_614718.1| signal transduction histidine kinase [Ruegeria sp. TM1040]
MNFPSLALLKGGDARTHETSLSEDPTAQNRAAGWTRSLSLRLAVMLSIAMVPLGLIAVDQTVRLQKEVNT
SNNLSLQALTAEFAQEEREIIKSAFASAETLTLSVPEIAHDLSRCSSLMRRFISTTDARYSFAGFLPQDG
VMACASSGGTIDYSENPDFPDWMRRPKREIRVNSYGPVAGSAVLIISEPVFASTGVFLGNQIIHVPHDRI
DQQFQTKLGDRPLDLVTVSAEGEILSASGARETALERLPIDLTLSELISIHDGQIEAKNAAGEVRLFSIV
PILSDTFYVIGSWDPEGISLAQETSALRYLFLTPALFPILMWLVSLVLIYVALDHQVVRHLRVIGLQMRQ
FASSRVLPDVQTNGLMPHELEVIQNQFTYVAEKLLHDEAHLFDAMHDKDVLLKELHHRVKNNLQLISSII
SMQMRRTRNQVTAAALKTVNQRVTSMATVHQTLYQASELGQVQANDLLRDVVRPLTELAPTTAPVPKIDI
TLDPVVLYPDQAVPLALLTVEAATNALKYLGVDKAGNRWVRVSLTTIEDGRVCLMISNSTNDETDFEDEG
TGLGSQLIRGFARQLECSPEITEGEDSYAISVTFDTLPFDSEDTGKTGIEDED
>gi|99082565|ref|YP_614719.1| exopolysaccharide synthesis, ExoD [Ruegeria sp. TM1040]
MTQTSHPVEDVLDQTDALLREGADGLRVSDLMDELGVKSIAAVLLAPSLALVSPLSGIPLFSSACGVTIA
LISVQMLMGRNHLWMPEVLSKRSLPADKTQYAIRALRAFAAWLDRRFKRRLTSLLTPPFLRVIQGICLLC
GLIMPFLEIVPFTSSILGGVVALLALSMLIGDGLIALVTVAGLGLALGGAALHLL
>gi|99082566|ref|YP_614720.1| hypothetical protein TM1040_2726 [Ruegeria sp. TM1040]
MKHLIRTTALVATMATAAGASTMVQDIDVTADVSALENRDAVSVWGALETDLERALAAQLVDQIASEGAE
DAADIDIEIDTLALASSLETEMGLANSVLEGDVSVDLPGSQYDQRYSLTVRAEQAHVHYPQGTDVSALNV
GSEVFYTAMVDAFAAHVAEKLK
>gi|99082567|ref|YP_614721.1| putative ammonia monooxygenase [Ruegeria sp. TM1040]
MTLTDVFGLVGALGVAVLGTLIFEAIGFPSAPLTGSAAAVSLAALFGLPIRMPVWLRTTAFVLLGINIGS
SVTREMLASALAWPVTIAILAVSLFVSLQISRIGLERWMRFSPRDAALAAAPGHLSYVLALSLSDGGQTS
RIAVVQSIRVLFLTLCVPVLVSLVFGATGVELMPEYVLSNWHLAALVGVTLVVGAVFDRLNIPAAYLLAG
IFCSAAGHIFAVTPGRPPEAATILAFLVMGTLIGSRFVGQRLADLKVDFAAGLWVTGINVTVTLIAIGVA
MQVMGLSPALLIVAFAPGGVEAMAAIAVTLGLDPAFVAAHHVMRLMILTVLMPLALRRAKAG
>gi|99082568|ref|YP_614722.1| citrate synthase [Ruegeria sp. TM1040]
MSDVSDWWRTSIIDMEPGRIELRGHPIQDLIGNVSFAEMIWLMVRGDRPTAPQSRLFEAALVSAVDHGPQ
APSIAAARMAVTCGLPLNNAMATAVNMLGDVHGGAGQQAVELYHHVDAHGGDLATALDDWRAEHGKIIPG
FGHRFHKPTDPRAPRLMALVSEIAETGAVSGRFLRIAEAIEAHISAEKGTALPMNIDGATAVIYAELGFA
PPLARGLFCLSRSVGILSHAWEQQQQGGRNKGPTPPKYRWTYDPN
>gi|99082569|ref|YP_614723.1| L-carnitine dehydratase/bile acid-inducible protein F [Ruegeria sp. TM1040]
MGIKPLSGVRVLDLTNVLAGPYCCYQLALLGAEVIKVERPGTGDLARQLGADPERNKSLMGVSFLAQNAQ
KKSVTLDMKHETGKALLKRLVRSSDVLVENFRPGVMDRLGLGYEVLKAENPNLIYCAISGFGQDGPWKNN
PAYDQIVQGISGVMSITGDGESAPLRVGYPLADTVGGMTAAFAISAALNDPERGAFLDISMTEAVISTMG
WVVSNHLIAGQTPGAHGNENTTSAPSGTFACADGPINVAANRDEQWQSMARHLGRADLLDHPDYATREDR
KRNRHMLRAELECVLRTRPAANWVAELNALGVPSGPVLTVPQILEEPQIKDRGLIAEVETEGAPLSLAGA
PVRFGTHRPVPDQAPPVLGADNTSIWQDLGLSAEEIETLRQERVI
>gi|99082570|ref|YP_614724.1| hypothetical protein TM1040_2730 [Ruegeria sp. TM1040]
MLEGLMIGLSTAFSVTNILMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAITLGDPSAALILLAGVYYGA
IFGGSTSSILLNAPGVAGTVASSFDGYPMARAGMAGKALTIAAISSFMGGTIGAILLMVFAPMLSTVALL
FHSAEYFALMVVGLSAIAAFAGTGNVAKALMMTLLGLMMATVGEGALFNMPRFTMGLMDLQSGFSFITLA
MAMFALPEAIFLVMNPKRAAQGGENGGKITGLRISGQEARKIAPVIGRQSIQGFFIGVLPGAGATIASFL
GYAVERNIATESEQKEFGKGSIKGLAAPETANNAACTGSFVPLLTLGIPGSGTTAILLGALIALNVTPGP
RLMVDSPHIFWAVIISMYIGNLVLLVLNLPLIPYIAKVLSIPRNYLIPFILFFTLMGSYIGQNNATELLI
LVGFGICATVLRFADYPLAPLLIGFILGRMLEDNFARSMQIYDGVSFILDRPMTLGLLVLAILLVIVPSY
RARRARARAAGVADGD
>gi|99082571|ref|YP_614725.1| hypothetical protein TM1040_2731 [Ruegeria sp. TM1040]
MALDRWIALIILGIALAYGYAAFFTMDQLLPPFMQRNPIWPSTFPKVLAVLSIITAAVIVLGLEKPSGET
KTPDIDYRRLGDYNIGQAALLLGLMVAYALLLRPAGFLLSTSGFLIVGAMILGERKLWVLVPVAALATGI
VWYLVEGVLGIFLRPLPFFLG
>gi|99082572|ref|YP_614726.1| hypothetical protein TM1040_2732 [Ruegeria sp. TM1040]
MTSFALGRRTLMAAAAAALTFGSPVMAEQALDKLHFLIPGGAGGGWDGTARGTGEALTKSGLVGTASYEN
MSGGGGGKAIGYLIENAESLEDTLMVNSTPIVIRSLTGVFPHNFRDLTLVAGTIGDYAALVVAKDSPINN
MEEFLAAYREDPRGTAVGGGSVPGGMDHLVAAMVMQSAGEDPTALKYIPYDAGGKAMAALLSGEIKALST
GFSEAIALAEAGEVKILGVTADERVPAYDAAATMKEQGLDTTFVNWRGFFGAPGLSEDKVAAYQDVLAKM
YDTPEWEDVRARNGWVNIHNSGDEFKAFLEGQEKVIGDLMKQLGFL
>gi|99082573|ref|YP_614727.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MNHGIPAQADTNLTRSRCFAAMRYLLVEDNDQLANAVLDRLTLDGHVVDRAPDLGTADDFMATTEYDMIL
LDIMLPDGDGRQFLQAHRAAQRDTPVIVLTARSEVSDRVSVLDLGADDYIVKPFDFSELEARCRAVQRRR
SGGASNIHSFGDVVFDPLACTLTVNGREVRLRNRELRLFEIFIAAPDQVFSKSKLVDRLFSYDVDASENA
IEVYVGRLRKHLEGARAQIVTVRGLGYRLSLS
>gi|99082574|ref|YP_614728.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MSTPILLRGSIRRRLIIQLLTGAALLAGLMFLVVQNYARDLAGQSQDEILSASVTAILDSASVRNGDLTV
DIPYFAFSMLGNISEDRVFYAITRNGAFMTGYSDLPRPVASTGLSPRFQTAQYDGEEIRMATATRRLSVS
GTPDFIEVTVAQTRYGLRQQLAGISQTVAGFGIGFFAIAAFFGILAAQSAIQPLRALAGAVSRRGLSDLR
PVSAPVPAEMESLVGALNGFMSRLKTSLSRSEDLIAEAAHRVRTPLTTVRTQAEITLRRVDKPENRQAVR
EMIRAIDESSRAAGQLLDHAMVSFRSDHLEMEDVELTRLARDAVSRLHPMAELRDIDIEITLPDAHMVVK
GDPILMQSALLNLLDNAIKYAPPDSIVHVTVRPTESGAEITVRDEGSGFPKADMGRLTRRFVRGGNTETV
VGSGLGLTIANEVARAHGGRLFLTNHSDKGGACASLSFPLA
>gi|99082575|ref|YP_614729.1| putative iron(III) transport system substrate-binding protein [Ruegeria sp. TM1040]
MLRVISTGDAEFFEPTLREFLSDLPDVRIVYTVASSGEMMKALDEDGFDADLAISIATDLQTKLVNDGQA
QPYSSATTERLPAWARWRDHLFAFTQEPAAVVLSRKALEGLPMPQNRQDLIALIRDYPERFQDKVGTYDI
RASGLGYLYATQDARTSETYWRLSEVMGSVGLRLYCCSSQMIDDVATGELAMVYNVLGSYAREKSNWDDV
IVLLPQDYTVVALRTAFIPRDSQAPELAGLMIDHLIARGWQAAPGAFSVLDDDSWSDDAQALRRIRMGPG
LLVYLDALKKAAFLEEWSSAVLR
>gi|99082576|ref|YP_614730.1| transketolase, putative [Ruegeria sp. TM1040]
MSQNIEHLRTVEQRLLWLSHWMIHNANHLRAKEDGIKIGGHQASSASMVSIMTALYFSALRPEDRVAVKP
HASPIFHAMQYLMGHQTREKMENFRGYGGVQSYPSRTKDIDDVDFSTGSVGLGVGITALASMVQDFITAK
DWGGDVTPGRMVALVGDAELDEGNIYEVLQEGWKNDLRNTWWIIDYNRQSLDGIVREGLFGRIEKIFEAF
GWDVVRVKYGALQRAAFEEPGGEALRDWIDACPNVEYSALTYMGGANWRKRLMEDLGDQGAVSALIDKRS
DAELAALMENLGGNCVETMADTFAAIDHDRPTCFLAYTIKGWGTPIAGHKDNHGGLMTKAQMAEWQTHMG
VAEGEEWELMATVSDTKGFQAYLDQVPFFAKGARRHSDARLSVPAVAVDTSREISTQMAFGKILDDLARG
DSDLAARIMTTSPDVTGTTGLGPWVNRRKLFAREAQKDAFIEHRIPSTAKWNFDPKGQHLELGIAEMNLF
LLLGAAGLSHSLWGKRVIPIGTVYDPFVHRGLDALNYACYQDARFMIVGTPSGVTLAPEGGAHQSVGTPL
TGMAQDGLASFEPAFADELAVIMEWAFDYMQRDGEGDPDERTWLRDETGGSVYLRLTTKPLEQPGQRVDD
AFRQGAIDGAYWLRKPGPNCSVVIAYQGAVADEAIAAAGLVGEHRRDVAVLAVTSADRLNAGWTAAQRER
ARGNPQAVSHVERLLGELPAHCTLITAIDGHPATLSWLGSVAGHRVVSHGVEHFGQTGTIGDLYRHFGLD
RHSLARSVGELTTGARRIPGGQAG
>gi|99082577|ref|YP_614731.1| methionine gamma-lyase [Ruegeria sp. TM1040]
MSETKGFATRAIHHAYDPMQNEGALTPPLHLTSTFVFENAEAGGEMFAGEREGHIYSRISNPTCSLLEQR
IATLEGAEAGLALASGMGAVTAILWTLLSPGDEVIVDKTLYGCTFAYMRHGLAKWGVTITHVDMTDPAAL
SAAVSEKTRVVYFETPANPNMRLVDIKRAAEIAHSVDARVVVDNTYATPYLTRPIELGADLVLHSATKYL
GGHGDVVAGLVAGSAELLTEIRLVGMKDMTGAVMAPFNAMLIMRGLKTLALRMDRHCASAQTVAEWLEAQ
PGVAKVYFPGLKSSEQHEIAKAQMAQPGGMIAFELEGGMEAGISLMNRLQMIQRAVSLGDAETLIQHPAS
MTHSTYTPEERAEHGISDGLVRLSVGLEEVSDILDDLQQALSPQMRQAAE
>gi|99082578|ref|YP_614732.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MDSKDRQIIRVLQAKGRMTNQDLAEAVNLSPSPCLRRVKNLETAGVIRGYSADVDARAYGLPITVFVRIK
LERHNEEDVRSFERRVQMIDEVLECHILTGATDYQLRVVVADLDAYEDFIRNRIHPIGGIASIDTSFVYS
TVKNTSVFPRLG
>gi|99082579|ref|YP_614733.1| Beta-N-acetylhexosaminidase [Ruegeria sp. TM1040]
MHFHLDSLWHAEEGAMEFALTNCGTTPVTNPRLVYATLTRCLRPSNCTGARLVRRQANFHEYASDEGFVL
APGETWRFTEHSLTRPALHSNEGPKSAGVLLEDDTLVLAFAGDLQASVVEGHATAVQNAALTCGILPEPK
RVAISNWAETAPVHLALQSDDAAVMQLVSRVSELTRRLHPLAPTPFVLTAKEDVALLCITPDQTLPADGY
RITWDEGKTTLHHGSGRGLFYGLVSLAQMLTHAHAEPQRYGVPLSGEIEDAPRHGWRGAHLDVSRQFYPL
DQVLRYVDIMAWHKMNRFHWHLTDDEGWRLEIKAYPQLTETAAHTGMDLPVLPQLGPDMTGQSGFYTQDE
ARQVVKHAAQFGIEVMPEIDVPGHCACVLGALPDLVDPEEPESYWSVQGFANNALNPAIEESYTFAETVL
AEVCEIFPFEVVHVGGDEVAEGAWMQSPKAQAMMRETGLKDTPQLQAYFLRHIQTYLAGLGRKLGGWEEV
AHGGGLDPEHSLLFAWTTIEKTAELAQEGYDVISTPGQAYYLDMALSDAWYAPGASWAGFTPLDKTYAFE
ADNGDPVLQGRLKGVQACVWSEHLTTMARRNHMIFPRLSAIAEAGWSAAENKAYDRFKSLAELMPRL
>gi|99082580|ref|YP_614734.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MPDMLVPLYRLPRMPDLAPDIKIRPALPFESHVLLAFVGQHFSSKWVDECTVALAARPSRVLIATEGSRL
LGFACFDVTCRGFFGPTGVDPEARGKGLGKALLLAALHRLRDEGFAYGIIGQAGPVAFYEQACGAVVIPN
SDDGVFDNALV
>gi|99082581|ref|YP_614735.1| ABC transporter related [Ruegeria sp. TM1040]
MLSETPILSLENLSKTFTLRPAFGRATQVNALRNVSLDLMPGRALALVGESGSGKSTVGRMIVGHHTPTS
GRILFEGQDIAELTTRADQMRYRQAVQMVFQDPFSALNPAHTIRHHLLRALSLHQPDADPETALRMILED
VELDPVSTPAKFPHELSGGQRQRVNFARALAVKARLIVADEPTSMLDVSIRKSILGLMQRLKDEHGLSLL
YITHDIATAEYLAEDTAVMFRGQVVERGPTARVVGAPQHGYTKLLRAAVPDPELRLTGSDAGFAAEARRV
RGQSAHDVQAFREVSPGHVIAEHAEVAHA
>gi|99082582|ref|YP_614736.1| ABC transporter related [Ruegeria sp. TM1040]
MSALLSVEGLRVDYLTAGAPFTAVRDISFEIQPNEILGLAGESGCGKSTVAYALMRLHKPPALVRRGRIL
FEGRDVLSFSDKDLRAWRWSEVSMVFQSAMNSLSPVMTIFRQFYDMLRAHGTITKADAMARTADMLEMVG
IPADRMHAHPHQLSGGMRQRVALALALTLQPKLIIMDEPTTALDVVVQREILQEVLRLKDKLGFSVLFIT
HDIALMAQISDRIGIMRAGEIVEIGTAAQIVTNPSHDYTRSLWEAMPILAKRPEGARHAV
>gi|99082583|ref|YP_614737.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSDLLRTFLRNRKAAIGLTIVLIYVAIAIAAPLIAPFDPIARVGRPHQPPSVEHWLGTTRMGRDVFSQLV
WGTRTSLMVGIVAGLIVTAIGTFIGITAAYFGGLVDDILNFFTNVVLVLPQLPLLLVLAAFLGQVGPWAI
ALIIGLTSWAWGARVTRAQAMSLKTRDFIQASAMIGEPTWRMILVEMLPNLLSIIGFNFIGSVIFTIITE
ATLEFLGLGSPLALSWGTMLYNAQTASAIMVGAWWEVLAPCAAIVLIGVGLSLMNFGVDEIANPRMRTLG
NVAKALRIEKRLLRQRMQEAEQ
>gi|99082584|ref|YP_614738.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSGPAFGAPHSPPDRWFDLMRFLLKRLGFYAVAFLVAATFNFMIPRLLPGNPADIMLANSGGMIAPEARE
ALMATFGFIDAPLHEQYFAYLGSIFTWDFGLSIKFYPMPVADVLTQALPWTLFLTGAALLISFSVGTLLG
VLAAWRRGQLTDVIASPTALALQSVPAVVVALCGLYFLAVRNRFFPTSYAFDPKLDPSWSWEFISSVAYH
GFLPVVTLSVVLIGGYLITMRNNMIGQLGEDYLAMAEAKGLSDARVRYAYAARNALLPSVTALALSFGAL
FGGSLITEVVFNYPGVGNLLYLGIVGRDFPLIQGQLLIMTLAMLLANLAVDLAYVFLDPRLKRA
>gi|99082585|ref|YP_614739.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKFTATAGLLASVALWTTAAQAEETVLSALPEQVTAWVENFNPFNQTTAAPSVMHFMYEPLIIFNALDGG
KPIYRLATAFEYSDDLSSITVTLRDGVQWSDGEAFTADDVVKSFDLALSDPALDSVGMAQMLSGVEKLDE
MTVKFNLSTPSSQAMYQIVRVPIVPEHVWSNVSDPVTFTNPDPVGSGPLTEIRRFTPQEYIQCRNNNYWD
AESLKVDCMRFPQIANNDQALAAAANGELDWMGSFLPDIDNTFVAKDPEHHSYWLPAGSLVAFYMNFEAK
EAGDKEAVNNVAFRRAVSMAFDREAMVEIAGYGYPTINQYPSGLGRAYHAWNNPEVEDKFGAFTQYDIEG
AKAQLAEAGFKDIDGDGFVETPSGEQIDIEVIVPNGWTDWVNSSQIAVEGLNAAGIKANVSTPESAIWTE
KLIKGDYDMAINSVRVGATPFNQYLDSLHEINQAKSRFAASRYYNEELSDLLDAFTQTSDTDKQMAIMSD
VQEIVGEDMPLAYVFNNPRWYQYNTKRFEGFFNADNPVANPVVHKTNPARLIHLLNLRPVE
>gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MPLQGIRARLLFTFLLASVLPLTLGGMVFYRLVNQTIATETFQKVAFVRDAKASEIMQYMTYARRQAENL
AQSANVRYSVGEFYGFSHALRQMQGTPEEAGAKLRNIFDIDGPAAPPSGIGSEDRLLREALEYSNTHRRF
HAGFLDFLNEAEFDNLYLADRHGQVVYSVHKDRYLGRVLQPQTPGLGQAYTRAVNQPGFDPVFQDYARDA
VTGQLVAYLAVPVRLHGSNKGAMILRMPPNSLHRLMIESETALTVLSSQGTIIATSAPPPDNATESLPEA
MRASEGVALLEAGLSGDPSLSAWRVLEPPFPAWTVVAEADRDAAFANSSQLRNALFLIGAVAVTGLGLLS
FVFANALTRPVRRLSEAASAVATGSLNEALPEYERPVEYARLSRAVNQMRRALRDQLDMIRDKNAELQEN
LRQIGEKNAKLEEADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDMLPAQASQLRLITFSARRLS
RLVDDLLDIYRIREGRMRLDLQPVDASHALRNVLQLLQPTFQVDPAKFHVDLPGDLPALTADPVRFEQIL
FNLLSNAVKYGGGSEVYITAEERPSGHVALAIRDHGPGIAADSMERIFHPLEQLMPDGSGQATGTGLGLT
IARHLADLMAGSIEVSSTPGEGSEFRVVLPLSDLPAVAPLEEWLPNPPAPVPMMHTKPGEPSPIAPDGSP
LILAVDDEPINLQVLQNVLLPQGYRITTARNGSEALRSVAQERPDLIVLDVMMAGLSGLDVARDLRRRHG
LHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLLEASRARSRAEENRELKEEIERRI
QIEDALRLSQRRMTQLLDVLEDGLICINARGVVTYVNEAAQQVLKQRVTVNRSRLSDVLPQDVLAPLEQT
EVEDEPIHMEITLRGTSHQVSLFAMLPEAGGGRAVLFTQAQSSRDQFVHSLRDVVDTSLPSLIPGDVTED
ASTTPGDTYRDTIVTLMSDSLDIWSAATGKGKIDFAETSGIWRVNLDKTSLQTRTLDKYLLIETLPDNPR
WRDVLKTVSFVLSLKERETADPALAQRFEALETQLEAFRTLIAQRG
>gi|99082587|ref|YP_614741.1| RpiR family transcriptional regulator [Ruegeria sp. TM1040]
MAPENSPTQGAVDLISNLRELNGSFAAREQKVADFVSAHLEEISNMTIAELAGAVGVSTPTVVRFCRSMG
CDGFREFKLRLAQNLAVSLQYLAPSQREVPEGGAGAVDQVLGALYATVNVMRQQLVPERLDAAAAALAAA
GQIVVAGVGGGSTMVAQEAANRMFRLGIPAVSISDSYLLQMRAATLVKGDVLLLVSASGAADEIVSAAAI
AGGYGATVVAIARPGSRLAQEATVAIEADLPEDPDILKPTASRYAHLVIVDALAMSVAQARTAATTENLR
RIRASLTAYHGRTGPQPLGD
>gi|99082588|ref|YP_614742.1| tripartite ATP-independent periplasmic transporter DctQ [Ruegeria sp. TM1040]
MIGDFAGRLSHQINRGTEVILAALMVALVLDVWIGVVDRYFFHWQLPWPEVLARYLMIWAAMLAVSSGIA
RREHIGLTAVLMILPAPLRRGMLILIDLMTFALFFYVLWFGIGFAESGAKRQAMILGATLQPFYMAIPAA
AALACVQVVLVMIRDAGGQLDLNDTDSKEGAGA
>gi|99082589|ref|YP_614743.1| TRAP dicarboxylate transporter- DctM subunit [Ruegeria sp. TM1040]
MIVGICFVVLLAVGMPIGFAIGLAGVIGIFTMGGGSTFLAIGPSKIFNGLNIFPFLAMPFFILAGEIMNS
TGITGRLVKLAEVLVGRFRGGLAHTNMLASVFFAGLTGSATADAAAFGRTLVPAMVKQGYKRDYACAVTA
AGSIIGPTIPPSGLMVVYGSLMGVSIGGLFAAGLLPGLVICAVCMGVIAIGGKRENLPKAARGASLGEVW
RTFLSSITALLMPIIILGGILGGIVTPTEAASIAVAYALFIGFFVYRTLTFPDLYGMLIRTARITGVIFV
IIAFASILGWWMSFERIPQAIAGSVLGLSENPYAVIAIIICILLVIGMVMDITAILIILGPVLVPLTEQI
GLEPIHAGIIFVLALNISLMTPPVGACLFVLSSVTGEKLERISVKLAPFLIAEVIILFLFAFWEDAALLL
PRALGFAP
>gi|99082590|ref|YP_614744.1| TRAP dicarboxylate transporter, DctP subunit [Ruegeria sp. TM1040]
MKSVLKTAAVGAIAALTASSAMAGGTIRFGHDNKTDPFENPAHACTAVFQNIVTADTNGSVTVEVFGSNQ
LGTAAEHVQQVRDGVIQATLTSTGALASYYPRIDVLNLPFAFANNASTYSVFDGEFGEALAADIEAELGD
VVVLGFPDTGGFFAVTNSQRQIANLEDFDGIRIRTMTLPSHQKIVQALGAEAYPLSWGEVYSGLQTGVID
GQMNPVPIISFANFAEVQKHMTLTNHLFSPYTFMVNKAFYDGLTEAEQNTLHTAAESCVTASRGLSRIIE
ASDRGLAGLMDKIEVTALSSEQRAAMAGATQPAFETHVAENLDAKAGELLALFKSEVGKANDASYLD
>gi|99082591|ref|YP_614745.1| hypothetical protein TM1040_2751 [Ruegeria sp. TM1040]
MRVFCASLATETNTFSPLRTDFSDFAQSFYAPPGEHPETPTLCSAVFPALRRRAKAEGFTLIEGTATWAE
PGGLVSAATWEHLRDEVLGQLKAALPVDAVVLGLHGAMIADGCVDCEGELIAAARALAGPEAKIGVSFDP
HSHLSAKRVDNADVITVFKEFPHTDFVEAGEACVELTLRAVRGEITPRISVFDVRMMDVLPTSIQPMRGF
VDKIVELEARAEILSGSVIHGFMAGDSPDLGAKVIVISDDDASKGDRIARELGLELFGFRGRTKPDFLPA
AEALRRADTSSNTPVVVADVWDNPGGGVAGDSTILLREVLKQNLDGVAFGTIWDPMAVRLCFAAGEGATL
DLRFGGKTSAHAGAPVDATVTVMRLQRDAVQSFGTSVVPLGDCAVIRIGDLDIVLNTNRSQTFSPDLFTN
LGIDIAQKRIVIVKSTNHFHGAFAPVAGEILYAAVDGPYPNDPARTDYTRLKRAIWPRVETPHAEETA
>gi|99082592|ref|YP_614746.1| alanine racemase-like [Ruegeria sp. TM1040]
MTLPIDTPAVLVDLNVAEANVRAFQSYCDRHSLKMRPHIKTHKLPQLAEYQIAQGAIGITCQKITEAEAM
VAGGDMRDILITYNILGAEKVARLRALSERVALSVVADNLTVVEGLSAGFAGANKPLPVLVECNTGADRC
GVETPEAALALAQAIDAAPGLKFAGLMTYPPVGGAAKVTTWLAEAKARIEATDLTVEVISSGGSPDMWQA
HEMPLATEYRVGTYVYNDRSLVTRGICTWDDCALTVLATVVSTPSATRAVIDAGSKVLTSDLLGLEGYGH
VLGYPDFMIDQLSEEHGRITSAQPTGLRVGDQVRIVPNHACVVANMLDHITLMRAEEVAGQETVAARGQV
W
>gi|99082593|ref|YP_614747.1| PfkB [Ruegeria sp. TM1040]
MNTPQILCLGEPLVEFNQTPEGPFAMGFGGDVSNVAISAARHGAQTGLITRVGDDPFGAALCDLWANEGL
VTDHAARAQGEETGVYFVTHDASGHHFTYRRKGSAASRLTPQDLPMNALQTCPIFYASGISLAVSSSMQD
AVIEAAQQARAGGGIFAFDPNLRVALWPLEVARETTHRCMQICDVALPGLEDARQLTGLHDAKDIASFYH
ELGPRIVALTLGAEGVLISVEGTQRVLSGHRVDAKDATGAGDCFNGAFLATLLATNDPFSAAEHANMAAA
LSTTGYGAVTPIPTLSQTRSALETAQRA
>gi|99082594|ref|YP_614748.1| endoribonuclease L-PSP [Ruegeria sp. TM1040]
MTIERIGAERTGAGGQNLPFSPATRAGDFVFISGQVAMNERGEIEPGGIEAQTKRTMENVIAVLAQAGCT
LDDVAKVNVWLDDPRDFWTFNRVYASYFPNGAPSRSTVRSQLMVDAKIEIDVTAYKPLG
>gi|99082595|ref|YP_614749.1| carboxyl-terminal protease [Ruegeria sp. TM1040]
MKKFAMAALGGTLAGFVATTYVAAPLLAQESNNTTVYEQLDLFGDIFERIRAQYVEEVDEKELIEAAIGG
MLQSLDPHSSYLSPDDASKMRVQTRGEFGGLGIEVTQEDGFVKVVSPMDGTPADEAGVEAGDFITHVDGE
SLLGLGLDEAVELMRGPVGSEIIITIVREGEDEPFDVSIIRDTIKLTAVRGRTEGDSVVLRVTTFNEQTT
PNLEAKLEEQVEALGGMDNVNGIVLDLRNNPGGLLTQAISVADSFLESGEIVSTRGRNPEDGERFNATPG
DLVGGKPIVVLINGGSASASEIVAGALQDHRRAIVVGTKSFGKGSVQTVMPLRSDGAMRLTTARYYTPSG
RSIQALGVSPDIVVAQPRRRPEAEEDEPASSAFGPRSEADLRGRLNNDSLSEDEVRQIEADREKAEKAAE
LREQDYQLAYAIDILKGLSALGPKD
>gi|99082596|ref|YP_614750.1| peptidase M23B [Ruegeria sp. TM1040]
MALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREGLRRVARRETQ
LTTQLKAREDEVADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEVTPGLQARADALRNDLQEVRD
LRHLQQSAALQLEKGLQGVQAARAALSTAIADRQDLPKRFIEDPVQTAILISSTETLTGFADGLTLIAEA
SGVEPNGADISDLRGDLPLPVEGLLLRGYGEQDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLG
NVVILEPQPDTLFILSGLAEVFGEAGQVIPEGTPVGLMGGEVAASSAILSLSGEGGGTGRSETLYIEVRM
ENSPVDPETWFRTGQGG
>gi|99082597|ref|YP_614751.1| phosphoglyceromutase [Ruegeria sp. TM1040]
MTTPKPVVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTARLVTHGPDVGLPSGQMGNSEVGHTNI
GAGRVVAMDLGQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSDGGVHGHVTHILAAIKAIRDA
GVPVWLHAITDGRDVAPKSALTYLDQLEAGMAPGAQIATVTGRYFAMDRDNRWERVSEAYDAMVKGAGQF
TAATARDAVENAYGRDELDEFVKATVVEGFDGIKEGDGFFCLNFRADRAREILRAIGEPGFAEFDTGPRP
ALAALLGMVEYSEGHNAYMTTAYPKRAIVNTLGEWVAKQGKRQFRLAETEKYPHVTFFLNGGKETPEVGE
DRFMPKSPKVATYDLQPEMSAPEVTAKFVEAIRAGYDLIVTNYANPDMVGHTGDLDAAIKACEAVDQGLG
EVVAALKDAGGAMIVTADHGNCELMVDPETGGAHTAHTTNLVPVALVGGPEGTALKDGRLADLAPTLLAL
MGLDQPEEMTGESLLV
>gi|99082598|ref|YP_614752.1| hypothetical protein TM1040_2758 [Ruegeria sp. TM1040]
MPHIIALPTNTVRAYQSGQADAYGQTPKRTLSDGGGNPCRHCLRFIPKGAKMLILAHRPFPAPQPYAETG
PIFLCAEACTRHDSDMVPEIFTRSPDYLIKGYSEDDRIVYGTGVVIPKEQMMAQAEKIFADPHVRYIHVR
SARNNCYQARIER
>gi|99082599|ref|YP_614753.1| acetyltransferase [Ruegeria sp. TM1040]
MLMQIRPFEPRDAVDWARIFHTAVHEVGARDYTPEQCAAWSPEPAPVDRVLERAQDGRRIWVAADTQDVA
QGFIELEPDGHIDCFYLAPDVAGAGIGASLYARLEHEARSLALASLFVEASEAARRFFLRQGFAEDHRRD
FERRGVRIHNYAMSKTL
>gi|99082600|ref|YP_614754.1| ABC transporter related [Ruegeria sp. TM1040]
MEIPGARAAMTDEAIRIEALRKTYKGRKGQPEKHALKGIDLTVPRGSVFGLLGPNGAGKSTLINILAGLV
LKTSGKVTIWGFDQDANPRQSRASIGVMPQELNLDPFFTPRGALEVQAGLYGVPKSERDSDGILKLIGLE
DKAEAYARTLSGGMRRRLLLGKALVHRPNILVLDEPTAGVDIELRQMLWENVRKLNAQGMTIILTTHYLE
EAQEMCDEIAIINQGEVVARDSTANLLGRLDARAMVVQPAAPVTTLPEGPGIEAELRGDGAVVLRYHSNE
TSAEAVLEAVRAAGISIRDVKTEEADLEDVFLALTKSR
>gi|99082601|ref|YP_614755.1| hypothetical protein TM1040_2761 [Ruegeria sp. TM1040]
MTIEAPETKIVDSYRVACDGGEGALGHPRVYLQIPEDEGFVECPYCDCKYIHRDFEGKVA
>gi|99082602|ref|YP_614756.1| hypothetical protein TM1040_2762 [Ruegeria sp. TM1040]
MAELLIIYHSRTGGSRQMAEAAYAGASSEGSARLVHAEEAGPEDLRAASGYLFCAPENLAALSGAMKEFF
DRCYYPVLGQLEGRAYAQMICAGSDGESAARQLARIAQGWRLKPVQEPLIICTHAQTPEAILADKVIPEE
ELQMCRGLGQAMAAGLVMGMF
>gi|99082603|ref|YP_614757.1| hypothetical protein TM1040_2763 [Ruegeria sp. TM1040]
MFLSALSPIRRVTAITLLGLSGLLITSCQREASSSEAAAFLSGCTSNPGRSDHCTPLLACFENGQSIRGA
TFGWLSGNIEGKTQDGVACRGKWEILSTADASGSAQFICEDGSYGNASFSYDRAKPGTIWGRGELNASEA
FQVWGGWDLIQRLQSAGGHFDQLCDALNGLKERRSAL
>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
MSTSNFGKGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLFKQVEDNKGPDAPTHVAVIF
DHSGKSFRNDMYDQYKANRPPAPEDLVPQFPLTREATRAFNIACKEIEGFEADDIIATLACQAREAGGRV
TIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVREKFGVGPDRVVDVQALAGDSVDNVPGAPGIGIKTAA
LLINEFGSLEDLLDRAEEIKQPKRRQTLIEKRDQIEMSKRLVQLDCDMELDFTLDDLEVRDPDADTLLGF
LAEMEFRTLSKRMADQLGREAPTIPEAPSAAAAALELPEAPGFDSAEYTTVRDAETLQQWIDLIREHGYV
AVDTETTGLNEMIADLVGISLCVVPGQACYVPLTHKTGNSDDLFGSDDLAEGQMPLKDALEMLKPVLEDD
AILKIGQNMKYDAKIFARNGIDVTPIDDTMLLSYALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSA
ITFDRVSIEDATPYAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQHGIKVDRDTLSR
MSNAFSQKMAALEAEIHELAGETFNVGSPKQLGEILFDKMSLPGGKKGKTGAYATGADILEDLATEHTLP
ARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGANTGRLASSDPNLQNIPVRSEEGRRIREAFV
ADEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAINFGV
IYGISGFGLARNLRIPRGEAQGFIDRYFERFPGIRQYMDDTVNFAKEHGYVQTLFGRKIHTPEIAAKGPR
ASFAKRAAINAPIQGTAADVIRRAMVRMPEAIAHLPARMLLQVHDELLFEVPEDHVEETISVAREIMEGA
ADPAVHMDVKLVVDAGRGQNWAEAH
>gi|99082605|ref|YP_614759.1| hydroxypyruvate isomerase [Ruegeria sp. TM1040]
MPKFAANLSMLFAELPYLDRFSAAAAAGFEAVEVLFPYEFAAKETQRALLANGLELLLINAPPPNYTGGD
PGYAAVPEQAERFQRDIRRVLRYADMLKAGRIHIMAGPAKGEAARRTFVQNLQAAAESAPQQQFTIEPLN
SGDFPGYFLDDYNLAIDILDEVGRDNVTLQFDAYHAQLIHGDALKVWETFGSRASHVQFAAAPSRCEPGR
GPVDFDALFQAIDDSGYSGWVSAEYTPSTPRTEDSLRWMKALQTA
>gi|99082606|ref|YP_614760.1| hypothetical protein TM1040_2766 [Ruegeria sp. TM1040]
MAKRMSGQKVVKPDADALEVSAKAAGDGGLPPVHLWNPPYCGDLDIRIHRDGRWSYLGSEIRRFELVKLF
SSILKREADKFYLVTPVEKVGITVEDAPFVAVDFEAAGVGKEQILTFTTQVGDETLAGPENAIRVETDPE
TGEPAPYVHVRAGLEALVDRKSFYRLMELGETHDGWFGVWSQGAFFRIIKADALDLT
>gi|99082607|ref|YP_614761.1| ATPase [Ruegeria sp. TM1040]
MSEAQDLLTDIEALEVRLQDARASIKRRFIGQERVVDLTLATLLCGGHGLLIGLPGLGKTRLVEALSTVM
GLNGNRVQFTPDLMPADILGSEVLDTAPDGTRAFRFVQGPIFCQLLMADEINRASPRTQSALLQAMQEKT
VTVAGADRALDAPFHVLATQNPIEQEGTYPLPEAQLDRFLMQIDIHYPDRETERDILIATTGVEEEAAHQ
VFTAEELIAAQTLLRRMPVGESVVEVILDLVRAFRPEDPAASERVAQTVAWGPGPRAAQALMLAVRARAL
LQGRLAPNTEDVIDMARPILSHRMQLNFAARARGDSLAELIDETAASLVKAEAAA
>gi|99082608|ref|YP_614762.1| hypothetical protein TM1040_2768 [Ruegeria sp. TM1040]
MSLPLASPDRTARGPAGQIRSRAEEAASVLPPLLVQAQQLAGAVLLGEHGRRRSGVGDDFWQYRPVQQGD
SRRMIDHRRSARGDQQFVREREWQIAQTVHLWVDQGQSMRFASDGKLPQKIDRARLLALASAVLMVRGGE
RVGLTGGLLPPRRGNMQILRLAEHFTTQDDATYAPPEHRALIPHARALFISDFLGPFEELEIALSKAADR
GLRGVLLQVLDPSEELFPFAGRTRFEGPHKAHVHETLKASALRDRYLERLAQRRDALETLCRAAGWTLGL
HHTGDSAQSGLLWLYHALERRQ
>gi|99082609|ref|YP_614763.1| double-transmembrane region-like [Ruegeria sp. TM1040]
MTMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTPWWLLLLRMLA
VAAAIVGLSGPVLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAELSEAGRAGRPVALLRLTEPEP
LQFRAAGYWGRQLPGMTPAPWVASPEQVRAAMDLIAEVEGGFDTLWLSDGLAMAARQDLVTALGERGNIE
VYESGAPVIGLLPATYADGAITLSAQRSNTGLTQEITVQALGPDPNGTERALASTTITFDAAASAAETQI
ALPMELRARISRFEILNTRSAGAVSLTDDRLRRREVALISAQSEDEGLALLSALHYLRQALEPTAELLEG
SLTDLLPANPDVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAASDTARDTEEPLMPVRLRIGGR
SIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPLVTRKPLGQGQ
VILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAVEVLDGFGRLTDADTLSGVAG
PDLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIWPASVPVLTYEGAAERPLGGLLLSLALVLLA
VDIAAALWVSGLWSPAKVATIALGMGLAGSGFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDAR
VDQIAAEGLRGLSNVMTLRTSVEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGG
MILFDTRDADLTQTGASSGAARRLQQLALPLDIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAP
PDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSPLYPVGRGFSGERQRELARRFGVNLLMHVLT
GNYKSDQVHVPALLDRLGQ
>gi|99082610|ref|YP_614764.1| hypothetical protein TM1040_2770 [Ruegeria sp. TM1040]
MTQTILFDPLVPLALLAVLAGLSVLAMALAIWRRLAGWALRAGAALVLLAALSGPVIQVEDRSPLSDIVI
VAEDRTASQTLSDRPDQMAAARTELEAALAKRANTDVRWIAVEDSPDDGGTQLMDALTRALADEPRARVA
GLIALSDGQVHDMERAPELPAPLHLLMTGRDSDWDRRLIVRNAPSFGIIGEPITLTLRVEDQGAAPEGLQ
STELQIAIDGGAAQSFRLPVGVDFDLPLTLPHGGRNVIEFRVPEAEGELTTRNNAALLQINGVRDRLRVL
LVSGAPHPGGRTWRNLLKSDSAVDLVHFTILRPPEKQDGVPVDELSLIAFPTRELFLEKIEDFDLIIFDR
YKRRGILPSAYLENVANYVRRGGAVLVAAGPDFASADSIFRTPLAEVLPARPSARVLEEPYRPVISESGL
QHPVTAELTGAESWGRWMRQVELDTTGGVTLMHGVGERPLLTLDRVEEGRVALLASDHAWLWSRGYDGGG
PQLELLRRLAHWMMKEPELEEEVLTAEATGQRMRIERRTLGETVGPVTITAPDGTTSEIALRQQRPGLWE
GRYESDQIGLYHLEEGEERTVIGLGPAAPREFEQTIATADLVGPLVRSLRGGTVALEDGMPSLRNIREGR
PAAGRGWIGLVPRGAYETTAVTQSPLLPSWFLLLLAATLMIGAWLREGRS
>gi|99082611|ref|YP_614765.1| hydratase/decarboxylase [Ruegeria sp. TM1040]
MRWLEEKRGISLRTSGLVGILTMSVALTLGTDIARAECASEEEVAQFVSAYVDRQPATALGAGGSMVDAL
CTQARVAEALSEHFGPVIGYKAGLTSAAAQARFEASEPVRGVLYRDMMLESGATIEMPWGTVPMVEADLV
LEIGDSAVNWATTPEEVMQNIKSIRPFIELPDLALAPGEPMTVETITAMGVGARKGVLGAEVPVTDPTAL
TAALAEMTVTLRDGTGDTVVSASGTAVLGHPAETILWLHEVGVTFKAGDLVSVGSFGPLVPPADLRGGAS
VIYMGLPGDPEVSIRFAPTS
>gi|99082612|ref|YP_614766.1| penicillin-binding protein 1C [Ruegeria sp. TM1040]
MAGPHRRWRSPLRLPLLGLLIAAVIAGKALDQWVEDTRLPQTLAETSVEVRDRHGRLLRAFPVEDGIWRM
AVRSEEVDPTYLRMLRAYEDKRFDTHFGVDPVAMLRAFGQAVWNGRTVSGGSTLTMQVARLLEDGPTGRW
SGKLRQIRVALALERKLSKTEILNLYLIHAPFGGNLEGVRAASLSWFGKEPHRLTAAEAALLVALPQSPE
TRRPDRSVSAAREARRRVLNRSQDAGVLTTEVAHLAAVAPLPDRRRAFPLLAPHLSDQLRATAPAQARFD
TTLDAMLQARLQAVLSRRVKVSGARLSAAMIVADHQSGEILVRIGAPDYTDTARRSYVDMARAVRSPGST
LKPLVYGLAFDDGLAHPDTLIRDAPVSFGGYAPQNFDGAFRGDVRVRDALQMSLNTPVVTLTEALGPSRL
MAAMRQVGMRPQLPSGKPGLAVSLGGVGVSLHDLVQMYAVVAAGGTAPRLTSETGAAREKTPRVMSPVAA
WYLGDILRDAPAPAGARGGMLPYKTGTSYGHRDAWAVGWDGRHVIGVWLGRADGTPVPGVFGAELAAPVL
FEAFAVLKPEIDPLSPPPSNALVLETAELPAPLQRFRARSETFSEAGAGAPEVLFPPTHARLSLVEGRMA
LKLRGGRLPFTVLANGVPVAQGLRSRDLDLPSPGPGHATLVVIDADGQSARVTVEIEETG
>gi|99082613|ref|YP_614767.1| alpha-2-macroglobulin-like [Ruegeria sp. TM1040]
MQRLLILLVFLFSNVLGSVAIAQTSESKPLPAHRFVTQPDTDHFGADLQALFDTSLEACQRACATQGACV
GFVYNLKSNACFPKSELSAPSTFVGALTVRKVPVDSDLAARAADRASRLPLRGGNDLSAARTLASDIGSR
YPLSGRDLGVLVDGSQQFFAGNNATMAARWMGEAVALSDAPDLWVEYARFVRAIPTDRSSETRRNLAEAA
SAALNGYLRADAAPLQATALTEAALALEKLGRGRDMVSMLRLAQDIAPRQDIAALLDRAVAKYGFRVSDT
RVEADSADPRICIVFSEELAQTGVTYGDYLKSDAKGLAAEASGQELCLTGLTHGQHLRVTLRRGLPAANG
EALVKDVDLRHYIRDRSPSVRFPGRAYVLARSDVTALPVETVNVDMLDLKLSRVSDRNLLRSMQDDLFAR
PLNQWQSENFDATLAEVLWSGTAEVQQELNRDMTTRLPLNDVLADQPVGIYALSASIPGADPYDSPAAMQ
WFVLTDLGLSSMSGADGLHVQVQGLSDAKARAGVEVELISEANAVIARATSDVTGYARFAPGLTRGTGSA
APAMLLARAGEEDFAFLSLRDAGFDLSDRGVEGRPAPGPVDVFLTTDRGAYRAGETINVTALSRDPRAQA
IEGLPLIAVLKRPDGVEYSRHISDGGSAGGHVFALPVGDSVPRGSWSVEIYTDPKADPLARQTVLVEDFL
PERIDFEQEIRDVARLRPGGQMVVDVKARFLFGAPGAGLSVEGDVSLSPVRQLSDWPGYRFGRYDAETTR
QTRYFSADDTDAQGRAVATGDLPDIEAAGLPLEARLRLRLADGSARPVERAQTVPVRPATPVIGLKAQFA
DDVVAEGTEAGFELVALGPDLSPMPMQVQWVMNRVETRYQWYQLYGDWQWEPITRRTRVASGEAMLGSEP
VAITAPVDWGRYELVVERLDGEYVTAAQDFYAGWYVPASDAQTPDRLELSLDRESYAPGDTARLRIVPQT
AGTALISVMGSELIHRQAVAVKAGENVIPLEVTSEWGSGAYVSASVVQPVASREGRTPTRALGIAHATVA
QPGQELDVAITVPEITRPRQTIEATVKVAGADAGEEVWLTLAAVDVGILNLTGYQSPDPVGYFHGQRRLG
MELRDIYGRLIDPGNGALGRVRSGGDAGLGGQFQSPPPTQDLMSVFHGAVKVDETGSLRLPITLPDFNGT
VRLMAVAWTDRSVGQAEADMVVRDPVVLTASLPRFLAPGDQSRIRLDITHADGPAGEVGLAVDVRGAGVR
LGAVPASVGLAEKGRVILEVPVTADAVGDPELRLSLTTPGGAVLEQMLRLPVRANDPEVSETRRFSLASG
DSFLFNADVFEGLRPGSARAVMSAGPLAKFDVPGLLAQLDGYPYGCTEQVTSKALPLLYLSSVADAAGLG
DRPKVDARINSAIRKVLTRQAANGAFGLWRAESGDLWLDAYASDFLSRARAKGYVVPDQAFARAMDNLRN
RLNYAPDFDNGGEEIAYALLVLAREGAAAMGDLRYYADVKAEAFSTPMGAAQLGAALAAYGDQRRADKMF
ARAAQMIAGQGAEQPLWRVDYGTQLRDTAAVLALAVEAGSAAVNRDYLTARVADSDGLRSTQEAAWSLLA
AQALVDAPEDSGLRVNGQPVAGAFVEVMAGGSPKELSVTAASGRSTDITLTRIGVPVVPPAARGYGFALT
REYYTLEGAPVDLTEVDVGTRLVTVLRVLPQEDIGARLMVNDPLPAGLEIDNPNLLRSGDLRDLDWLSLW
DADHAEFRSDRFLAAVTSRGTDPITLAYMVRAVSPGSFHHPAASVEDMYRPAYRANTAAGRLQVR
>gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040]
MSLAEKLAQERRARLAAERLLELKQAELTDANRKLGRHALALTKRIGATQAEIATFKNENEKVKSDLNTA
NEKVEQAERRLWHSIQAFQDGFAFFDSDSKLIGANTAYLNIFEGVEEVSPGVSYVRILQILTDEGLIDTE
ELSADSWRAMMTERWMSPAPEPTVVRLWNDRYLKLIDQRGHDGDIVSLALDITATVHYEEELRSARERAE
AANRAKSAFLANMSHEIRTPMNGVVGMAELLSDTTLTEEQRLYANTIKNSGEALLVIINDVLDYSKIEAD
KLALHPEAFDLEACMHEVVMLLQANARDKGLTLLVDYDLFMPTNFIGDPGRIRQILTNLIGNAIKFTNEG
HVTARVTGVPHPEDNTVMLHISIEDSGIGIPDDKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKLM
DGEIWVESQLGKGSCFGFRLPLVVADGSQVNAPELPENLNCVMIVDDMDINREILNRQLQRLDLKVVAVT
SGAEALDVLNAEIDLVITDRNLPGMDGLKLARSLHHASPQTPVLLLSSDPADGSDPALSDLFAGILQKPI
PRGALFRALSKLDAPSVHPARPQDVPPAAPAIEPPSDAPVQVPAPEAGVDFGSGATIASDLRRMRVLAAE
DNRTNQLVFRKMVKDMNIDLRFAGNGLEAVELYQSFKPDMIFMDISMPKMDGKEATQAIRELEKENGRRV
QIVALTAHAMDGDSEGILAAGLDDYLTKPLRKSVIHDRIMKNMPTAVAPLQGEGDDLQATG
>gi|99082615|ref|YP_614769.1| dihydrolipoamide dehydrogenase [Ruegeria sp. TM1040]
MTDIKRKVLVIGAGPGGYVCAIRAGQLGLDTVIVDEARPGGTCLNIGCIPSKAMIHAADEFYKMTHAGAG
PLGISAAGPTIDLEQTVAWKDGIVERLTGGVGGLLRKAGVKMISGRARFVDGKTVTVAGDEGEIQIRADY
IVIATGSAPVELPFLPFGGAVMSSTEALSLTEVPESLAVVGGGYIGLELGTVFAKLGSKVTVVEAEDRIL
PLYDKALTRPVHKRLEELGVTVMTGTKAQSHEGGALQTDAGEIAAERVLVTVGRRPRTQGIGIDELSLTM
NGPFIRIDKVCQTSMRGIYAIGDVTGEPMLAHRAMAQGEMVAEYLAGQAVEWDKRAIPAVCFTDPEIVTC
GVLPGEVEGTKSAEFPFVANGRAMTTERDEGFIRVVWREADNAVLGLQGVGVGISELSSAFSLAIEMGAC
LEDIAATIHAHPTQSEGLQEACLKALGHALHI
>gi|99082616|ref|YP_614770.1| branched-chain alpha-keto acid dehydrogenase E2 component [Ruegeria sp. TM1040]
MGIFAIRLPDVGEGIAEAELTEWHVKPGDIVKEDDVLAAVMTDKAAVEVPSSVEGKVVELGGEIGDMLAI
GCVLVRIEVDGEGNEAASVAEPEPTPAPKEQKAEPEPERGDKPAEPARPVVKTGKPVARAKNTKPLAAPS
VRARAREEGVDLRQVPGSGPGGRISHGDLENWIASGGIQQGSVKRGKNTGVEDVRVVGMRRKIAEKMAIS
KRQIPHITIVEEIEMEALEDLRAALNRKYKDQRPKLTLLPFLMRAIVEAVREQPELNARYDDEKGIIHRH
GGVHVGIATQTPNGLNVPVVHHAEAGSLWDNAAELARLAEAARDGSIKRDELTGGTITITSLGALGAIAT
TPIINHPEVAIVGVNKMQMRPVWDGQQFQPCKMMNISCSFDHRVIDGWDAAVFVQKLKLLLETPAMLFVE
G
>gi|99082617|ref|YP_614771.1| branched-chain alpha-keto acid dehydrogenase E1 component [Ruegeria sp. TM1040]
MAQMTMIEALRDAHDVAMEKDDRVVVYGEDVGYFGGVFRVTAGLQAKYGKSRCFDTPINEAGIVGTAIGM
AAYGLRPVIEIQFADYVYPAIDQIVSEAARLRHRSAGDFTCPIVIRMPTGGGIFGGQTHSQSPEAFFTHS
SGLKTVVPSNPSDAKGLLLAAIEDPDPVIFLEPKRLYNGPFDGYHDRPVTSWKKHPLGDVADGYNPIPLG
KAAIRRKGNDVTVLAYGTMVYVAEAAAEESGVDAEVIDLRTLLPLDLETIVASVEKTGRCVIVHEATKTS
GFGAELMSIVQENCFYSLEAPIIRVTGWDTPYPHAQEWNYFPGPERVGEALKKCMED
>gi|99082618|ref|YP_614772.1| branched-chain alpha-keto acid dehydrogenase E1 component [Ruegeria sp. TM1040]
MSDNETYAPLALNVPEPGCRPGDTPDFSYFEVPRAGAVARPSVDVDPDDMREMAFSIVRVLNKEGEAVGD
WAGTLSPEELREGLRDMMLLRAFDARMLNAQRQGKTSFYMQHLGEEAVSCAFSRALKDGDMNFPTYRQAG
LLIARDYPLVTMMNQIYSNADDPLHGRQLPIMYSSKEHGFFSISGNLGTQFVQAVGWAMASAISGDTKIA
AGWIGDGSTAESDFHAAMVFASTYNAPVVLNIVNNQWAISTFQGIARGGVGTFAARGHGFGIASIRVDGN
DYLAVNAVAKWAAERARLGLGPTLIEHVTYRAGGHSTSDDPSAYRSADEGAAWPLGDPIDRLKRHLIRIG
EWSEERHSQAEAELMDQVITAQKEAEKVGTLGGGKGPSPRDMFEGVFEKMPPHLIRQRQEAGY
>gi|99082619|ref|YP_614773.1| Glu/Leu/Phe/Val dehydrogenase, dimerisation region [Ruegeria sp. TM1040]
MTLNLTEETAPEGYERLVFAQDPESGLQAFICVHSTVLGPAAGGCRMWNYATVDEARMDVLRLAEGMTSK
NAMADLALGGGKSVIVGNPQSDKSPALLRAFGRAVQSLDGSYYTAEDVGISPDDMKIVAEETPYAVGLED
GAHGTGDPSPFTAQGVFQCLLVGAEVVFGTSDLSGRRVLVQGLGHVGMSLAEKLYGAGAELIVADINEAA
LQHAKTAFGATICDPAEIFETEMDIFAPCALGGVLTEATAQKLSAKLVCGAANNQLETPEVADALRARGI
RYLPDYVVNAGGIISVAGEIHKAGTSYRTERLDGVAARIRTLVDLSDKTGRTTTAVADDMVADILAKASN
TARGAA
>gi|99082620|ref|YP_614774.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MLAKYAADRLDRAILRALREDGRMSLVQLSERVGLSATPVKRRLRQLEDSGLIEGYVARIDRKAAGFGIT
AFVSVELEKQDAEAVASFQRKVARFEEVVTGSLMTGAQDFLLEVVVESLEEFETFLQTKLMRVEGLRAVR
SRFALRKFIDRARIP
>gi|99082621|ref|YP_614775.1| iron-containing alcohol dehydrogenase [Ruegeria sp. TM1040]
MASGGSAPTPAHHRNMLMSLIGNWSYPTAIKFGAGRIKELADACAQAGIKKPLLVTDKGLADLPVTQSTL
DIMEAAGLGRGMFSEVDPNPNEKNLDAGVAAYKAGGHDGVIAFGGGSGLDLGKMVAFMAGQTRPVWDFED
IGDWWTRADADAIAPIIAVPTTAGTGSEVGRASVITDSATHQKKIIFHPKVLPTVVICDPELTVGMPKFI
TAGTGLDAFAHCVEAFSSPHYHPMSQGMALEGMRLVKDYLPRAYADGTDIEARAHMMSAAAMGATAFQKG
LGAIHAMSHPIGAHFNTHHGTTNAVCMPAVLEFNASEISERFDMAAAYLGIEGGFEGFKAFVQEFNDSLG
IPRGLSALGVTEESIPELVKGAIIDPSCGGNPVKLTEENLTQLFKAAL
>gi|99082622|ref|YP_614776.1| aldehyde dehydrogenase [Ruegeria sp. TM1040]
MGKTLNCISPIDGSVYASRETLDLDAARSEVAAVRSAQKAWAARPLQERIDLVMAGVAAIGEMNDEIVPE
LAHMMGRPVRFGGEFGGFNERASHMAQIAAESLADIEVGEDATFKRYIKRIPHGVVFVVAPWNYPYMTAI
NTVAPALIAGNTVVLKHATQTLLVGERMAKAFHAAGVPEDVFKNVFLDHDTTSALIAEKAFDFVNFTGSV
GGGQAMERAAAGTFTGVGTELGGKDPGYVMEDADVDAAVDTLIDGAMFNSGQCCCGIERIYVHESLYDAF
VEKALAVVNGYKLGNPLDAETTIGPMANVRFAQEVRDQIAEAIEQGAVAHIATMDADDGGAYLTPQILTN
VTHEMRVMRDESFGPVVGIMKVSSDEEAIKLMNDSDFGLTASIWTKDLERAQAVGDQIETGTVFMNRADY
LDPGLCWTGCKNTGRGGGLSVIGYHNLTRPKSYHLKKVTA
>gi|99082623|ref|YP_614777.1| L-glutamine synthetase [Ruegeria sp. TM1040]
MTFEDLKEQIAAGQVDTVLVCIVDMQGRLMGKRFHAEAFLEMADGETHCCNYLLATDLAMATPDGYASTS
WERGYGDYIMKPDLTTLRPVPWLEGTAMVLCDVIDHHTHAPVAHSPREMLKAQIARCEALGLSPVMATEL
EFFLFKGTHDEIAAGGFNKLEPISTYNEDYSIMQTSKEEPVMRPIRNHLRAMGLPIEGSKGEAEAGQEEL
NIKYDAALATADHHTIAKHGIKEIAHQQGFAATFLPKWHHERVGSAAHVHQSLWKDGGNAFFDESAPLGK
SKLMDHYMAGLLKYAADYTYFMAPYINSYKRFAKGTFAPTQVVWSVDNRTAAFRLCGDGTKGVRVECRVP
GSDMNPYLAQAAMLAAGLKGIEEKLELQDPFNGDAYAGDTQQHIPRSLLEARKALLGSEMLREAFGEDVI
THYARAAEWEIEEFNRVVTDYEVARGFEKA
>gi|99082624|ref|YP_614778.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MTTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGDRMQIELFYAD
QLVPTGELFRAMQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDVPVLFNQYGLNEIWDAEYSKV
GVKHISAGAWDPCHFATKDPINSLEDLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAMQTGELDGVA
WSGITEDYTVGWADVTNYFLTNNISGAWAGSFFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEA
SLRVNGDKMKLTSIPDAEWQQVEDAAVKFWDEIAAESETKAKVVEIFKKYNADMAKAGRPYRYG
>gi|99082625|ref|YP_614779.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Ruegeria sp. TM1040]
MSQEYIAIFMFASMMLMLFTGQRVFGAIGAVGAVAALLLWGVGGYDIPFSAAMKLMKWYPLLTLPMFIFM
GYVLSESRLADDLYKMFHVWMGPINGGLAIGTIGLMVLVSAMNGLSVAGMAIGATIALPELLRRGYDKTM
VTGVIQAGSSLGILVPPSVVLVLYAMIARQPVGQLWLAGVIPGLMMAGLFIIYIWLRCKANPALGPAMED
AHEVPRAEKLRLLGSGALPLLIFAAMMVPFVNGWTSLVESSAIGALTALAASIAKRRMTWKIFESCTKNT
LAISCMFMWIILAALGFGAVFDGLGAVKAIDSLFTEQLGLSPWVILILMQLSFIIMGTFLDDTAMLVIVA
PLYVPLVAALGFDLVWYGVLYTITTQIAYMTPPFGYNLFLMRAMAPPEISLTDIYRSIVPFVAIMVVALA
IIMVFPQIALWLPETIYGQ
>gi|99082626|ref|YP_614780.1| hypothetical protein TM1040_2786 [Ruegeria sp. TM1040]
MIGAMLGYVRVVDAVNYRIGRLMMWGLFVMMGILLWSSISKTFFLPSLWTLEMAQFAMVTYYILGGPYSI
QIGSNVRMDLFYHNWSTRRKAWFDAFTVLALITYLAILFYGGLGSTAYSLGYWGDNPFAFFWGLITGAEE
VGHMERASTAWRPFIWPIKSIMVFGFFMMLLQAISELFKDIARLKGYDIPSERPS
>gi|99082627|ref|YP_614781.1| N-formylglutamate amidohydrolase [Ruegeria sp. TM1040]
MLHMNTDTFAFDFGPSFAKTPSAAEAEVIIVCEHAANWIPPSLDALGLDDAARDSHIAWDPGALGVARKL
AELLKGPLVEGCISRLVYDLNRPPESPTAIPPASEIFDVPGNRDLSDAARAQRVEAVYEPFRAALAEEIA
TRESALRLMVTVHSFTPVYNGETRAVELGLLHGRDDRFAKAMLAHQPEGLAWDVRLNEPYSASDGVAHTL
DVHGCDNGLLNVMLEIRNDLIATPAQQDAWATALAPWIRATLEDAAV
>gi|99082628|ref|YP_614782.1| RpiR family transcriptional regulator [Ruegeria sp. TM1040]
MPTIAEKLKSRESDLTRAERQLSAAILDNYPIPGLGSITELAELAEVSTPTVARMVQKLGFSGYPEFQHA
LREELREIISNPVEKRAEQAPELPEGHMLNRYAVAVYDNIRATLENVNLEEFDTLCALLADTNSRVHIAG
GRLSGTLAQNFYLHLQMIRRDVFMIPPRASWTHSVLDLLPGDTLILFDIRRYENATLLLAEMAHERGVKV
VLFTDQWRSPIQKEATFTFAARIAVPSAWDSGVALLLLIESMIAKIQEDHWDTVKARNDELEAAFDRTRL
FRKFT
>gi|99082629|ref|YP_614783.1| AMP-dependent synthetase and ligase [Ruegeria sp. TM1040]
MTARKDRFHLSPETRILTPEVAGLAELLHALREGQSILAQPGAVPIQAQAEQTQWLYCKSSGSTGYAKTI
RRSPESWIRSFEMDRELFALGARDTYASLGNLSHSLTLFAAVAACQIGADLAMLGDCGPREQLSRLGEFH
ASVLYATPAQLRLLRRAAGKRQLEGLRLLFSSGGKLDHETRAGLQQLFPGAQVIEIFGATETSYMTIAGP
DALEGSVGQAYPGVEIRIDSPDANGVGEIWIRSPFVFDGYVKGESQETRWNNGWLTIGEMGRLDESGNLF
AKGRKNRMVTVADKNVFPEEIEAVLMSVPEVEIAVVCAVPDALRGHVIHAAVQGEASPAALRQLCRHQIG
DHAVPRSIRRVAKIPMLTAGKPDLQALRDLWDDL
>gi|99082630|ref|YP_614784.1| Acetyl-CoA C-acetyltransferase [Ruegeria sp. TM1040]
MPSIVSARRTAVIPRGGAFAALEPHELAAPVIRACLEDAGLAGDEVGELILSNALGAGGNPARVAALAAG
LPDHVAGLSIDRQCAGGLDAILLGHALVQAGHHEVVIAGGAESYSRRPQRSRTFADGRPPEPYAQARFTP
WPDRDPDMAVAAADLARMQHITRAEQDDWAQRSHALASLHEARRAEEIVSINGAVKDSFTRTLTARHCAR
AKVVTGDITAANMAVAADAAAFVVIVSEKIARRLRTRGLSLIAGATLGADPEQPGLAPLPAIQKVLTQAQ
IERTDLCRAEIMEAFAVQALACVRGAALPADIVNPAGGALAQGHPVGASGALLVVRLFHALRCGDGIALA
AIAAAGGIGSAALFEAT
>gi|99082631|ref|YP_614785.1| catalase/peroxidase HPI [Ruegeria sp. TM1040]
MDGQDIGAGGGCPFSGANTNKGRRSNRDWWPNQLNLSILHQHQARQNPLGETFNYAEAFKSLDLDAVKKD
LIALMTDSQDWWPADYGHYGGLMIRMAWHSAGTYRTADGRGGASTGTQRFAPLNSWPDNGNLDKARMLLW
PIKKKYGNALSWADLMILAGNCAIESMGLKPFGFGGGRADVWEPEEDIYWGAEDEWLATSDHAQARYSGD
RVLEDPLAAVQMGLIYVNPEGPDGNPDPIASGRDIRETFARMAMNDEETVALTAGGHTFGKAHGNGPVDA
VGPEPEAAPIEAMGQGWLSSHKSGKGVDTITSGIEGAWTPNPIQWDMGYFDVLFGYDWELTKSPAGAWIW
HAKDLKEDDHAPEVDGSGKKVPIMMTTADMAMKMDPIYGPISKRFHENPEEFAEAFKRAWFKLTHRDMGP
KACYLGADVPDEDLIWQDPLPAVDHALIEEADIASLKADILASGLSVQDLVYVAWSSASTFRGSDKRGGA
NGARIRLAPQKDWEVNEPAKLEKVLNALEGIQSSFNAAASGGKKVSLADLIVLAGSAAVEKAAKDAGFDV
TVPFTPGRTDATDEQTDVESFDVMEPQIDGFRNYAPKKFSVSTEEMLVDKAQLLTLSAPEMTVLVGGLRA
IGANYGDSAHGVLTSRKGQLTNDFFVNVLDLGTKWTATDDSGEIFEGADRATGEVKWTGTRADLIFGSNS
QLRALSEVYAQDDNAGKMVADFVKAWVKVMELDRFDLK
>gi|99082632|ref|YP_614786.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MINITLKQLRYFEALTRHGHFGRAADACAISQPALSIQIKELEETLGIVLFERSARHVRLTGFGQDFAER
AREILRSVDELGDLARVAQDRMVGRLRIGVIPTVAPYLLPTLIQRLNARHDGLDVHIRETLTQRLITELL
EGRLDTAIVALPVSESGLVETALFEEKFVLVRQASDAGAPVPSPEGMREMKLLLLEEGHCFRDQALSFCS
LRPALPRDGLDGSSLSTLVQMVGAGIGVTIIPEMAVAVETRSAPVSLARFPGDEPGRTIGMVWRKTSPLA
PQLQDIAEVVREAAEALARRNRDVLPL
>gi|99082633|ref|YP_614787.1| carnitinyl-CoA dehydratase [Ruegeria sp. TM1040]
MSQDSPIKTRREGAILEVTLDRPKANAIDLATSRQMGEAFQAFRDDDALRVAIITGGGDKFFCPGWDLKA
AAGGDAVDGDYGVGGFGGLQELRDLNKPVIAAVNGIACGGGLELALSADMILAADHASFALPEIRSGTVA
DAASIKLPKRIPYHVAMELLLTGRWFDAEEAHRWGLVNEIVAADQLMDRAWELARLLASGPPLVYAAIKE
IVRDAEDSKFQDAMNRITGRQLRTVDVLYGSEDNLEGARAFAEKRDPVWKGR
>gi|99082634|ref|YP_614788.1| CoA-binding [Ruegeria sp. TM1040]
MQSLNRLFRPKTIAVVGGGAWCLAVIEQCRRMGFEGEIWPVHPKAEEVAGLTAYADVAALPSAPDASFVG
INRLATIDVVRALAERGAGGAVCFASGFLEAEAEDSEGANLQQNLLEAAGSMPILGPNCYGFINYLDGAL
LWPDQHGGQRVEKGVAIITQSSNIALNLTMQKRALPLAYVVTCGNQAQTGIAAIGEALLEDDRVTALGLH
IEGFGDLRAFESLAVKARQLGKQIIALKVGRSAQARAATVSHTASLAGGDAGASALLGRLGIPRLYDLPS
FLETLKLMHMVGRLPSTRIATISCSGGEASLAADTAHGRGVSFPPLNERQRTDLRAALGPMVALANPLDY
HTYIWRDVDAMTRAFAAMVDPQLGLTMIVVDFPRDDRCDASDWDCVIEAAIAVRQQTGQPIALVATLPEL
LPETVMEQLIAADVVPFMGLSEAITATEAAGHPLPELTHPLLLPTKSHSNPDLVPEGEAKAWLARFGLRV
PRSKPARSVVAARAVAADIGYPVALKGEGIAHKTEEGAVRLNLRSGQEVSDAAVAMPTDRFLVEEMITGA
VAELLVGVTKDPAHGFVLTLAAGGTLTEVMQDSTSVLLPASDSALSTALDSLRIAPLLKGYRGAPPADRA
AIMRAIRAVEAYVIAEAEGLEEIEINPLICTPSDAVAADALMRRKDKIK
>gi|99082635|ref|YP_614789.1| SelT/selW/selH selenoprotein [Ruegeria sp. TM1040]
MSTTAEPTTKPHITITYCIGCNWLLRAAWMSQELLSTFQEQLAGVTLVPGEIGGTFEISVEDQLIWERKR
DGGFPDVKELKTRVRDLINPEQSLGHLDRNSSSE
>gi|99082636|ref|YP_614790.1| butyryl-CoA dehydrogenase [Ruegeria sp. TM1040]
MEQADTPTRRELVHFGMTEEQAMIVETTRAFVENELYPHELEVERSGHLDMDLIKELQSKAIEAGLYAAN
MPEEVGGAGLDTLSWLMYEKELGRANYALHWTAVARPSNILLAGTDEQKEKYLFPCIRGEKWDCLAMTEP
GAGSDLRGMTASARKEGDDWVLNGTKHFISHADIADFAIVFMATGEEDTPRGKKKKITAFFVDKGTPGFA
VRDGYRNVSHRGYTNQVLEFDDCRLPSSAILGEVDQGFEVANTWLGATRLQVAATCLGRADRALQHAVEY
AAQRKQFGQPISKFQGVSFKLADMAMELKAANLLTWEAGWKFDQGSVTEADMSMAKLKATEMLAMVADEA
IQIHGGMGLMDELPLERIWRDARVERIWEGTSEIQRHIISREMLRPHGG
>gi|99082637|ref|YP_614791.1| transcriptional regulator [Ruegeria sp. TM1040]
MQKWTNDLATASQVDILLFDDFSGHCLANTVEPMRAANTLAGRELYRWRFLSLNSSRVVSSSGMEVTAHA
QLADCRGDMLAVMPSYNFLRHDTPETRRALRAAAMRYRELAGLDTGPWLLAAAGLLDGRRATIHWDELER
LAEAYPDIDVQRSRYVLDGNRITCTGALAAFDLMLERIGIAHGQALRLEVAALFMSTEGSGPTPESMLAR
TKVVARAVGVMQAHVEEPLSIPEIARQIGRSRKDLEARMKSDLGATPAKVYRRLRLIQARKLILETDIGI
SEVATRTGYENPSALTRAFRVEFGTTPRALRAPTS
>gi|99082638|ref|YP_614792.1| arsenate reductase and related [Ruegeria sp. TM1040]
MDIVIYHNPDCSKSRDVLRMIRDAGYAPTIVEYLSTGWTRAQLLGLFAAAGLTPHTALRRTRSPAEALGL
LDDDVSADLILEKMVAHPELVNRPIVACRNGVKLCRPAAAVLELLDGKSQEASVLMA
>gi|99082639|ref|YP_614793.1| adenine deaminase [Ruegeria sp. TM1040]
MTHKTFPSWPDVAPQLIETAAGRSPADTVIRNGKWVNVHTREVLEGHDIAIKAGRIAYVGPDASYCTGPE
TEVIDAEGRYMMPGLCDGHMHIESGMLTPAEFARAVIPHGTTTMFTDPHEIANVLGLEGVRLMHDEALLQ
PVNIYTQMPSCAPSAPGLETTGYEISAEDVAEAMTWPGIIGLGEMMNFPGVAHGDPKMLAEIAATQRSGK
TVGGHYASPDLGPDFAAYVAGGPADDHEGTCEADAITRMRQGMRAMVRLGSAWYDVEAQITAITEKGLDP
RNFILCTDDCHSGTLVNEGHMNRAVRHAIDCGCDPLIAIQMATINTATHFGLEREIGSITPGRRADIILT
SDLKTLPIEVVIARGQIVAESGSIKVECPHLDWPESARGTVHLGHTLAATDFELAAPEGANAVTANVIGV
VENQAPTKALKAELPVRDGLVEGEGDVCQIALVERHRATGGVTNAFVSGFGYEGKMAMASTVAHDSHHMI
VVGTDRTQMALAANRLAEVGGGITIFRDGAELALVELPIAGLMSDSPASEVAANAQKLVEAMQACGCTLN
NAYMQHSLLALVVIPELRISDLGLVDVRSFKKIPVIEPFNE
>gi|99082640|ref|YP_614794.1| AMP nucleosidase [Ruegeria sp. TM1040]
MNDVKTPDLPAAESFTDAKAAVARLIELYDSATNFLCDEFIAAMSAGAAPSSRMRAYYPEVRFTTTTYAQ
VDSRLSFGHVADPGIYSTTVTRPDLFRHYLEQQIGLLIKNHDQPVTVGVSQTPMPVHFAVASRPGLTVPQ
EGAARFTLRDVFDVPDLATTNDDIVNGTYVPENGVGPLSLFTAQRVDYSLARLSHYTATDPEHFQNHVLF
TNYQFYVTEFEAYAREQLADPDSGYTSFVSTGNVEITKADGELPASLKMPQMPTYHLKRPDGNGITLVNI
GVGPSNAKTATDHIAVLRPHAWLMVGHCAGLRNSQALGDFVLAHAYLREDHVLDDDLPVWVPIPALAEIQ
VALEEAVAEETGLEGYDLKRIMRTGTVASHDNRNWELRDQSGPVQRLSQSRAIALDMESATIAANGYRFR
VPYGTLLCISDKPLHGELKLPGMASDFYRTQVSRHLLIGIKAMERLRTMPLERLHSRKLRSFDETAFL
>gi|99082641|ref|YP_614795.1| histone-like DNA-binding protein [Ruegeria sp. TM1040]
MSKPMTKTQLVAALAEEMDSDKKTAGAALDAVCNLITREVSGGGAVTLPGVGKIYCRERPEREVRNPATG
EKFMKEADKVVKMTIAKALKDSVNGEG
>gi|99082642|ref|YP_614796.1| hypothetical protein TM1040_2802 [Ruegeria sp. TM1040]
MDLRAILMGLAFALMWSSAFTSARIIVADASPLFSLAMRFLLSGLIGVAIARAMGQTWRLTPAQWKATIL
FGICQNALYLGLNFVAMQWVEASMAAIIASTMPLLVALASLVLFREPIRPLGMLGLVAGVAGVALIMGTR
ISAGVDLLGIALCGLGVLALTTATLALRGATSGGNFMMVVGLQMLVGSAALFPAAFAFETIRVDPSWPLA
IAFVYTTFVPGLAATLIWVMLLNRIGAVRAATFHFLNPVFGVAVASSLLGERLGLLDMAGVAVVTFGILA
VQLARQPATAAPARTSTAEPQMGQR
>gi|99082643|ref|YP_614797.1| methionine sulfoxide reductase B [Ruegeria sp. TM1040]
MTKYFKNPDAIAALSEEEFYVTQNSGTERPGTGKLLSNKEPGIYVDIVSGEPLFASSDKYESGCGWPSFT
KPIEPAHVQELEDRTLGMIRTEVRSTHGDSHLGHVFPDGPADRGGLRYCINSASLRFIHLDDMEAEGYGA
YINQVEDHR
>gi|99082644|ref|YP_614798.1| methionine sulfoxide reductase A [Ruegeria sp. TM1040]
MTTTERAVLAGGCFWGMQELIRHRKGVLSTRVGYTGGDVPNATYKNHGTHAEGIEITFDPEQTSYREMLE
FFFQIHDPTTVNRQGNDIGMSYRSAIYYVDARQKQIAEDTIADVEASGIWPGKVVTEVEPVGDFWEAEAE
HQDYLQRLPNGYTCHFPRPDWVLPKRDQAAE
>gi|99082645|ref|YP_614799.1| hydantoinase/oxoprolinase [Ruegeria sp. TM1040]
MAILLGIDTGGTYTDAVLIRDESEVIASAKSLTTREDLAIGVGGAVRAVLAQSGVAPADISMAALSTTLA
TNALVEGQGGRVALIYIGFSAQDLERHGLDTALKGDPVLLLAGGHTHAGSEAAVLDKEALIAFLETESTG
VSGFAVAGVFATRNPAHELEVARLIQEHTGAPVTCSHQLSAKLNGPKRALTAVLNARLIGMIDRLIGRAA
DTLTALGVEAPMMVVRGDGALMSTDQARARPIETILSGPAASIVGARWMTGAENALVSDIGGTTTDVALI
ERGLPKIDPDGAEVGGYRTMVEAVAMRTTGLGGDSEVHLQREGLRGGVALGPRRVLPISLIATQAPETVH
AALDTQLHAQVIGEYDGRFVRGVTGQQAHGLSAREEALLSRIGQDVRPLGEVLRSRVDQSALSRLIDRGL
VQMAGVTPSDASHALGRVSTWDNEAAHKALTIFAKRRVGSGDMVAKDADTLAQMIVDQLTEQTALTLLES
VFSEERALFGGSPSDLARHVLLQRGLQGHTGLVALDARVNVDVIGLGASAPSYYPAVGERLRCNMILPEH
AGVANAIGAVVGRIVQRRSGTVTAPSEGRFRVHLADGPVDFTESEAALTALEYALRAETVAAAEEAGAGD
IHVHVTKDLRTAEVEARQVFVEATLTVEASGRPRVAHA
>gi|99082646|ref|YP_614800.1| hypothetical protein TM1040_2806 [Ruegeria sp. TM1040]
METAAELKTRLIAQAKAEGFVSVRLCRPWDVPEVPERLRAFLEAGYHGQMKWMAERINWRENPAALWPEA
RSVIMLAESYTPDEDPMAVVGLPDRAAISVYARGKDYHDLVKKRLKRLARWLIEEAPDEAQVKVFVDTAP
VPEKALGQASGLGWQGKHTNLVSRDWGNWAFLGSIFTTLDLPVDAPEPDRCGSCRACLTACPTDAFPAPY
QLDARRCISYLTIEHKGPIEEELRTKLGNRIYGCDDCLAACPWNKFAVEASDMRYAAREGTIAPPLAELS
QLDDAAFRARFSGSPIKRIGRDRFVRNVLYAIGNSGDAGLHVFAQALCDDPDPTVAEAARWAAARLP
>gi|99082647|ref|YP_614801.1| 6-aminohexanoate-dimer hydrolase [Ruegeria sp. TM1040]
MSSSTSNFFAATLAAAVALVVSSQAGAQSAPLSAQESDPNVMGWMQGFPPPADKIITQPDSVYFSFPRLR
WSVCHLREFLPTEEISRGLSDPVPLTYPSASEFAELRAEIDAVTFMPQNSDAEMTWEQSLYANYTDGMLI
LHKGEVVYERYFGCLEEGGKHAIMSMTKSFTGLVAEIMVVEGLLDDTALVRDIIPEIGDSAFATATVRQV
MDMTTGVQYSEDYSDPNADIWLYSKAASPLPKPEGYVGPNGYWEYLQQVAPEGNHGDAFHYKTINSDMLG
WIISRVSGQSVTDIVSDRLWRRMGVEQDAYQTVDAKGVPFAGGGITAGLRDLGRLGQLMLNEGELNGQRL
FPTEVVAKISAGGDRSKFGDGFPTFGAGSYTSQWWVLHNAHGAYAARGVHGQTIYVDPTAEMVLVRLSSF
PKAQNGFIDPTSLPAYQAVAEHLMATRP
>gi|99082648|ref|YP_614802.1| hypothetical protein TM1040_2808 [Ruegeria sp. TM1040]
MRVLSRYCLVASASSLAIAASAQERDPMLLYERDALTVRGHFQAGLNAVAEDNLFWDLAATTAPGSGFDP
DTRWLESYIKPGISFEYRLDTGATLYGKLSGVASYTWGKDAFDYGDTGATTLEEAYIAIRGRLGTDATYD
LSLGARELTLGTGMLIANGATSGFERGALKFGPRKAWEGAAIGRFTLGQVSGTAFYLDPNELPSTDGNNN
LAGVDLRYDAPAGGYLGVTYVDVLNSESSYPKAAPGGVGAPSILPGGREGTRTLGLYGRTNPFDNGLENW
TFTGEVAYQWNDRIDLEAWAGRVTAGYTFEGLAWSPNLTIGYQSFSGDDPNTTKLERFDPLYYQGSPSAW
ATGSKSASTFINSNVNALTLALRLQPSRQDTWTLRYAHIRANELNSPVQFGQATRVDLNGNVVSGVTDSH
LADDLFLEYSRIINRNTFLTAGISVSFPGAGIDNVIGATADPWTGGFINVVVNF
>gi|99082649|ref|YP_614803.1| diaminopimelate epimerase [Ruegeria sp. TM1040]
MLPFMKMHGLGNDFVVIDARESDIEITPAMAKGIAHRQMGLGFDQLAVIATADASTEADAHLVFYNADGS
TSGACGNATRCIARYLMDQSNKPSLRLTTDRGVLIATDAGEGLTSVNMGAPQLSWDEIPLAEELETLELP
IEGAPSATGMGNPHCTFFVEDAEVIPLAEFGPRYEHHPLYPERTNVQIAHVVGPNHLRMRVWERGVGITL
ASGSSSCATAVAAARKGLTGRKVQIDLDGGTLWIDWRDDGVWMTGPTMHVANGSFTRQFLESLSE
>gi|99082650|ref|YP_614804.1| MiaB-like tRNA modifying enzyme [Ruegeria sp. TM1040]
MSNAPKFTTLGCRLNAYETEAMKELSRQAGLEGAVVVNTCAVTAEAVRKARQEIRKLRRDHPDAPIIVTG
CAAQTEPETFAAMSEVTQVIGNTEKMQPETWQRMAKGLDFIGATEKVLVDDIMSVTETASHLIDGFGTRS
RAYVQVQNGCDHRCTFCIIPYGRGNSRSVPAGVVVDQIKRLVDKGYNEVVLTGVDLTSWGADLPASPKLG
DLVMRILKLVPDLPRLRISSIDSIEVDENLMQAIATEPRLMPHLHLSLQHGDDLILKRMKRRHLRDDAIR
FTEEARKLRPQMTFGADIIAGFPTETESHFENSLKLVTECDLTWLHVFPYSKREGTPAAKIPSQVNGNVI
KERAARLRAIGEAQIARHLSEQIGRQHSILMENPHMGRTEQFTEVRFATPQTEGALVQAQITGSDGLQLT
A
>gi|99082651|ref|YP_614805.1| hypothetical protein TM1040_2811 [Ruegeria sp. TM1040]
MALILFLHGPSSSGKSTLAKAIREASSRPLLHLSIDHLRDSGAWEPQAYPDWAGARAGFFSGFHRAVKAF
ADAGNDLILEHILDTPGWHADLQQLFCGHKVIFIGLTPSLSTLETREAARGDRPAGSAARDFEHVHRDLS
YDLTLDGSAPLQESVRSILSMTSAPLARSRFFN
>gi|99082652|ref|YP_614806.1| cytochrome c1 [Ruegeria sp. TM1040]
MFKKIVTGAAFALALVPAASFAAGAGGHVEDYAFSFEGPFGTYDQNQLQRGLQIYTEVCAACHGLKQVPI
RTLSDSDGPGMPEDQVRAYAADNFEVFDPELDDFRPAKPVDHFPENTALGAPDLSLMAKARAGFHGPYGL
GINQLFKGMGGAEYIASLMTGYTGETKVEAGTTFYKNTAFPGGWISMAPPLADEQVEFIDGHENDLENLS
KDVSAFLMWTAEPKMMARKQAGFVGVLFLTVLSVLLYLTNKRLWAPHKGKKTS
>gi|99082653|ref|YP_614807.1| cytochrome b/b6-like [Ruegeria sp. TM1040]
MSGIPHDHYEPKTGAEKWLHSRLPIVGLVYDTIMIPTPKNLNWWWIWGIVLAFCLALQIVTGIMLVMHYT
PHADLAFASVEHIMRNVNGGYMLRYLHMNGASLFFVAVYIHIFRGLFYGSYKAPREITWIVGMLIYLMMM
GTAFMGYVLPWGQMSFWGATVITGLFGAIPFIGEPIQTWLLGGPSVGNATLNRFFSLHYLLPFVIAALVI
VHIWAFHTTGNNNPTGVDVRRGSKEEAKKDTLPFWPYFVIKDFLGLAVVLVIFWAIVGFMPNYLGHPDNY
IEANPLVTPAHIVPEWYFLPFYAILRAFTSEVWVVQIASFVTGGIIDAKFFGVLAMFGAIAVMALAPWLD
TSRVRSGKYRPQFKWWFLLLVIDFFALMWLGAMPAEEPYATFSLIASAYWFAYFLVILPLLGVIEKPEPI
PATIEDDFNAHYGKKSEATPAE
>gi|99082654|ref|YP_614808.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Ruegeria sp. TM1040]
MSHAEDHEGTRRDFLYYATAGAGAVTAGAAVWPLVNQMNPSADVQALSSILVDISGVDVGTQISVMFLGK
PVFIRRRTQEEIDEARAVEMAELIDASSENPNKPGTDASDENRTLDENGEWLVMMGVCTHLGCVPLGDGA
GEFNGWFCPCHGSHYDTAGRIRKGPAPQNLHIPVAEFTDENTIKLG
>gi|99082655|ref|YP_614809.1| glutathione S-transferase-like [Ruegeria sp. TM1040]
MKLFYSPASPFVRKVVLVLHETEQLDDVELQLVATTVTEPDSALAASNPLAKIPALAREGGPTLYDSRVI
CEFLDSRAGSTLYRGGWDIKVLEATADGIMDAAVSMSYEKRLRPAEKQWDAWLEGQTRKVLGGCSAVETR
WMPLLSGPINIGQLAVAAALDYVDFRHPDLNWRAAAPELAAWFKTFETRPAMVATNPRQS
>gi|99082656|ref|YP_614810.1| ABC transporter related [Ruegeria sp. TM1040]
MLRLEDLDIRKGSFCLSGTASIGAADSVAVIGPSGAGKSTLLEAIAGFQPLHAGQVLWRGEDLTAHRPGQ
RPVAMLFQDGNLFPHLTVRQNAGLGIDPNRKLRPKERQTVEEAIARVGLGGLEERKPAELSGGQQSRAAL
ARVLVQRRDILLLDEPFAALGPALKAEMLDLVKEITSENGVTLLMVSHDPDDARRIADQVILIAEGQLYP
PAPTHALLDNPPPALRGYLGA
>gi|99082657|ref|YP_614811.1| thiamine transporter membrane protein [Ruegeria sp. TM1040]
MARSAQPISLPVVATWPGTCAALGVLLLVLGTLVAVAWHADGGARFAAADWAALRFTLVQASLSALLSVG
LAVPVARALARRRFWGRRALITLLGAPFILPVIVAILGLLSVFGRSGWVSDILSLIGVPPLQIYGLHGVV
IAHVFFNLPLATRLILQGWQEIPAERFRLAAQLNAGPRAIWFLIELPMLRQVLPGAAAVIFAICLSSFAV
ALTLGGGPRATTLELAIYQAFHFDFDLGRAAMLATVQLGLTIVAALLALRASTTEGLGAGLDRAVMRWDG
KGAFTRCLDGVWIFAAALFLLLPLLSVVMAGLPGLWTLPRSVWSAALVSLQVATLSTVLLLIVALPLSAS
IALGRKRLGEVAGILGLAASPLVIGTGLFVMVYPFVDPRLLALPVTALVNMVMALPFALRILVPRLRQVL
WQNGRLALALDMRAGTVWRIVLLPRCRAQIGFATGLTAALSLGDLGVIALFADPEVATLPLQVYRLMGAY
RMEAAQAAALLLFVLSIGAFWALDRGGRFHAEA
>gi|99082658|ref|YP_614812.1| thiamine transporter substrate binding subunit [Ruegeria sp. TM1040]
MKSLIFASATCLATAVAAADTPELVVYTYDSFVSEWGPGPAVEEAFEAVCGCDLKFVGAGDGAALLARIK
LEGARSDADVVLGLDTNLTAAAKETGLFAPVSVEADYALPITWSDTHFAPYDWGYFAFVHNADVPAPSNF
EALADSDLKIVIQDPRSSTPGLGLLMWVKAAYGEDAPALWEGLSDNIVTVTKGWSEAYGLFLEGEADMVL
SYTTSPAYHLIAEEDDSKSAALFDEGHYMQVEVAGKLAASDESALADQFLEFMVSDAFQSIIPTTNWMYP
AVTPDSGLPQGFETLISPEKSLLLPEDEAAALRAEALEEWRAALSR
>gi|99082659|ref|YP_614813.1| chorismate synthase [Ruegeria sp. TM1040]
MSMNSFGHLFRVTTWGESHGPALGATVDGCPPNVAVSEEMLQHWLDKRRPGQNKNTTQRNEPDAVRILSG
VFEGKSTGTPIQLMIENTDQRSRDYGEIAQTFRPGHADITYFQKYGNRDYRGGGRSSARETAARVAAGGV
AREALKSLAPGIEIKGYMTRMGEMEIDRARFDWSAIDQNDFWIPDAAAVQDWEDYLQALRKQHDSVGAVV
EVVARGVPAGIGAPIYGKLDTDLAAAMMSINAVKAVEIGEGMNAALLKGSENADEIFMGNDGAPVYSSNH
AGGILGGISTGQDVVIRFAVKPTSSILTPRQSIRKDGTAAEVITKGRHDPCVGIRAVPVAEAMMAFVILD
HILLHRGQIGENQGVIGAPD
>gi|99082660|ref|YP_614814.1| 3-beta hydroxysteroid dehydrogenase/isomerase [Ruegeria sp. TM1040]
MSKLVTIYGGSGFVGRYIARRMAKEGWRVRVAVRRPNEAMHVKPYGVPGQVEPVFCNIRDDASVAAVMAG
ADAVVNCVGVLNEVGKNTFSAVQSEGAGRIARIAADTGVERLVHVSAIGADADGDSAYARTKAEGEAAVL
EAFPSAMILRPSIIFGPEDQFFNRFASMTRFGPVLPIAGGTTRFQPVYVDDVAKAAVAGLTGQAAAGTYE
LGGPEVKSFTELMSQMLDVIHRRRLVVSLPNFVARLMAFGFDMAQAVTFGLFTNGLLTRDQLKNLQNDNV
VSEGAKGLADLGIEPVTMGSVLPDYLWKFRPSGQYDELMKSAGNLRGDI
>gi|99082661|ref|YP_614815.1| undecaprenyl-diphosphatase [Ruegeria sp. TM1040]
MPLLQLILVALIQGVTEFLPVSSSGHLILLPRLTGLEDQGQAIDVAVHVGTLAAVVLFFWRDVRAGLIGL
PRALIGRLDTKGARLALGLIVATIPTVIFGTFLYFTGLSESLRSVAVIGWTMLVFGVVLYIADQRGPIDK
SASDWGVRDAVIMGLWQMLALIPGTSRSGITITGARSLGYNREDGARIAMLMSIPTIIASGVLLGTEVAL
DADVDLMRDMGIAALLAMASALAALALMMRLLRSVSFTPYVIYRVALGMVLLFIAYG
>gi|99082662|ref|YP_614816.1| putative oxidoreductase [Ruegeria sp. TM1040]
MAKQPMLKFVKIDRDMPEKRDAETRREDFDEIYAEFAAVKAEEQASRCSQCGVPYCQSHCPLHNNIPDWL
RLTATGRLEEAYATSQATNTFPEICGRICPQDRLCEGNCVIEQSGHGTVTIGAVEKYITDTAWDKGWVKP
NAPIEERAESVGIIGAGPGGLAAADMLRKAGVQVTVYDRYDRAGGLLTYGIPGFKLEKEVVMRRNQLLAD
GGVTFVMNCNIGEDISFDEIRAKHDAVIIATGVYKSRDLNMPGSGAKGIVKAIDFLTASNRVANFGDTVP
EYEDGTFNATGKKVVVIGGGDTAMDCVRTSVRQGAESVKCLYRRDRANMPGSQRETQNAEEEGVVFEWLS
APKGFTDADGKVSGVMVQKMRLGQPDASGRQAPEVIEGADYVEEADLVIKALGFEPEDLPTLWGQPNLPV
TRWGTIKAEFKTGATNLDGVYAVGDIVRGASLVVWAIKDGRDCAEAIIERFNNKAAVAAE
>gi|99082663|ref|YP_614817.1| glutamate synthase (NADPH) large subunit [Ruegeria sp. TM1040]
MTKYDENWVRAEEAKRKWMAENGLYAEEEEHSSCGVGLVVSVDGSKSRKVVDAGIDALKAIWHRGAVDAD
GKTGDGAGIHVQIPVPFFWDQVKRTGHNPREDELLAVGQVFLPRTDFGAQETCRTIVETEVLRMGYYIYG
WRHVPVDVTCLGEKANATRPEIEQILISNSKGVDEETFERELYVIRRRIEKAAAAAQVGGLYIASLSCRS
IIYKGMMLAEQVAVFYPDLMDERFESAFAIYHQRYSTNTFPQWWLAQPFRMLAHNGEINTLKGNVNWMKS
HEIRMASSTFGDHAEDIKPIVASGSSDSAALDSVFEVLVRAGRSAPMAKTMLVPESWSKQAEELPQAWRD
MYSYCNAVMEPWDGPAALAMTDGRWVCAGLDRNGLRPMRYVVTGDGLVIAGSEAGMVPIDEASVVEKGAL
GPGQMLAVDMAKGQLYHDVEIKDKLARALPFGEWVEKVTDLDEVLGGVQETPLFSGEELRRRQVAAGYTI
EELEQILAPMAEDGKESLASMGDDTPSAVLSKQYRPLSHFFRQNFSQVTNPPIDSLREFRVMSLKTRFGN
LKNVLDEDSSQTEIVVLESPFVGNSQWDKLVENLGSKLAEIDCSFAPGRGALNAALARIRAEAEEAVRSG
AGHIVLTDQHSGADKVAMPMILATSAVHSHLTRQGLRTFCSLNVRSAECIDPHYFAVLIGCGATVVNAYL
AEDSLADRIERGLLDGSLTENVARYREAIDQGLLKIMAKMGISVISSYRGGLNFEAVGLSRAMVAEYFPG
MTSRISGIGVHGIQVKAEEIHAKGWNTQENVLPIGGFYKARKSGETHAWEATSMHMMQMACNKASFELWK
QYSAKMQSNPPIHLRDLLDIKPLGKPVPLEEVESITAIRKRFVTPGMSLGALSPEAHKTLNVAMNRIGAK
SDSGEGGEDPAHFVPEPNGDNPSAKIKQVASGRFGVTAEYLNQCEELEIKVAQGAKPGEGGQLPGMKVTD
LIARLRHSTKGVTLISPPPHHDIYSIEDLAQLIYDLKQINPRCKVTVKLVASSGVGTIAAGVAKAKADII
LISGHNGGTGASPATSIKYCGLPWEMGLTEAHQVLAMNNLRDRVTLRTDGGLRTGRDIVMAAMMGAEEYG
IGTAALIAMGCIMVRQCQSNTCPVGVCTQDEALRGKFTGNADKVVNLITFYAQEVREILASIGARSLDEV
IGRADLLAQVSRGSAHLDDLDLNPLLITVDGSASIVYNRDKDRNAVPDTLDAEIVRDAARFLKDGEKMQL
SYAVQNTHRTVGTRTSSHIVQNFGMRNTLQPDHLTVKLQGSAGQSLGAFAAPGLKLEVSGDANDYVGKGL
SGGTIVVRPPMASPLNAAENTIVGNTVLYGATDGYLFAAGRAGERFAVRNSGAKVVIEGCGTNGCEYMTG
GVAVILGSIGANFGAGMTGGMAYLYDPDGNAETLMNMESIVTCPVTVDHWEAQLKDLIERHVAETGSRKA
AEILQHWDSEKTHFLQVCPKEMLNKLPHPISVETSAIPAE
>gi|99082664|ref|YP_614818.1| monofunctional biosynthetic peptidoglycan transglycosylase [Ruegeria sp. TM1040]
MAKAARKKKSAPKSPSGLARFSPRALYRRLRRSVLRVVFGGLAAFLALILLYSVVNPPITHTIWVEKRRL
GDVDREWVPIEHISPHMARSVVAAEDARFCEHWGFDVHAIRSALESGANRGASTLTQQVVKNVFLWQGRS
WFRKALETFITPVVEATWSKERIVEVYLNVAEMGEGIFGADAAARHYFGVGPDQLSAQQAALIAALLPNP
KERSAADPGNFMRKRARQIMDGAATIERDGRSACFEH
>gi|99082665|ref|YP_614819.1| glutathione S-transferase-like [Ruegeria sp. TM1040]
MARLYHVPLSPFCRKVRLSLAEKKIEVELVEERYWEQDADFLRRNPAAKVPVLRLDGILMAESAAICEYI
EETRPDPSLMPKKPAERLEVRRLVSWFDDKFHHEVTSKLLYERVNKKMTGEGYPDSGNVKSGAKAIKYHI
DYLSWLLDHRRWLAGDSMTLADFAAAAHLSSLDYISDVDWNRSAVVKDWYAKIKSRPAFRSILADQVPGF
RPPSHYADLDF
>gi|99082666|ref|YP_614820.1| HemY-like [Ruegeria sp. TM1040]
MLWSLLKILVFVAIVALLAFGAGVLMETAGGVQITVAGTEYTLGALQSVMALLALMLLTWLFFKLLSLLL
ATLRFLNGDETALSRYFDKGRERRGYQALSDSLMALAVGEGRTALTKAAKAERYLQDPALTDLVVAQAAE
MAGDTHKAAEAYKRLLSDQSTRFVGVRGIMKQKLSEGDTETARQLAEKALALRPKHEEVQDTLLKLQAQA
EDWAGARQTLATKLKTGTLPREVFKRRDAVLALSSSKALLAEEATPEQQEQAIEANRLSPDLVPAAALAA
RSYIAKGKPRNAVRILKKAWEAQPHPDLAHAFAEIEPNETAEARVKRFEPLLRLKPDHDETRLVRAELLI
VAEDFPEARRALGDLVDRAPDARALTLMAAIEKGEGGPDAMVQGWLTKALTAPRGPQWVCESCNHIHAEW
APTCENCASFDTLTWKRPETPEYHSATGAAMLPLLAGRQDDNGTGALTIIDPEPSDVREDGDQTQRTDNP
DDKR
>gi|99082667|ref|YP_614821.1| hypothetical protein TM1040_2827 [Ruegeria sp. TM1040]
MAVDKKTENAAKPDPEDVKETEVADQPQEPDAVASDLEANHGETAELDPSVVPEEADSETETETETETET
ETETETETETETETETETETETGEQESQTPPAPVIEERIIEKRGSFGSAVLGGVVAALIGFVAGKGGVLD
NFLPPSWRDSSVDIAPLRTAQAELQSQVTDLRGSVAEIEIPDLGPLTTRLKDLEEAQSQFNQPSSDTSEE
LAQALQRLTDRVAALEARPITEGAPADAVEAFEAELQRVRESLSTQQAEVERMVSEAQEMERASAEAARV
AAAQSVVSRLRSALDAGAPYADLLSELRSLGVEAPEAITSAADTGVATLTGLRDGFAPAARAALAAAREE
TKGSGGLMAYVYRHLGARSVQPRDGDDPDAILSRAGAAVDGGDIAAALEELAALPESAKAELEAWQIAAR
TRLEAEAATDALSQSLNAN
>gi|99082668|ref|YP_614822.1| uroporphyrinogen III synthase HEM4 [Ruegeria sp. TM1040]
MNRKGLSLLMTRPLSAAQRFVDLLPSEMCRELPIIYSPLMEIAPLQGLIDLGGIDAVIFTSGEGVRVASA
AQPLRLRAYCVGERTASAACEAGWSAQFVGDTADTLVEALLASRPSGKLLHLHGEYTRGAVAERLSEGGV
SCSGQAIYRQALCPLSAEAEAALTAQIPLIVPLFSPRTAAHFDSLCPEKAHLSLIAMSDAVAEAMPRLQS
RVRHVSKFPTAEAMAELVCDVAAALLRVETKPPED
>gi|99082669|ref|YP_614823.1| O-sialoglycoprotein endopeptidase [Ruegeria sp. TM1040]
MTQTLTLLGLESSCDDTAAAVVRQTTGAKAEILSSIVFGQTELHSAYGGVVPEIAARAHAEKLDSCVRDA
LAEAGLTLGDLDAIAVTAGPGLIGGVMSGVMCAKGISAATGLPLIGVNHLAGHALTPRLTDDITYPYLML
LVSGGHCQYLIARGPETFSRLGGTIDDAPGEAFDKTARLLGLPQPGGPSVQAEAEHGDPERFRFPRPLLD
RPDCNLSFSGLKTALMRMRDQIIAEKGGLTRQDRADLCAGFQAAIVDTLVEKTRRALRLYLEDKPQHPTL
AVAGGVAANTEIRNGLMALCFELETDFLAPPLALCTDNAAMIAYAGLERYKTGARDGMSLSARPRWPLDK
TSPALIGSGKKGAKA
>gi|99082670|ref|YP_614824.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Ruegeria sp. TM1040]
MSVAVLGAGAFGTALAISLARKAPTTLWCRSKDHADEIRSTRENTRRLPGAPLPDALAVTSDIACLGAHD
VILLAVPMQKMRGFLTAHHAALSGKTLVACCKGIELDSGLGPVAVLRDTVPDATAALLTGPSFAADIALG
LPTALTLACDPDETGKALQATLSTDNLRLYRTTDLTGAEIGGALKNVIAIACGAVIGARLGDSARAALMT
RGYAEMQRLALARGARPETLAGLSGFGDLTLTCGSELSRNFRLGLSLGRGEAFDPSITVEGAATARATAK
TAQEMGLEMPITQTVTNLLDQRLTISDAADQLLKRPLKEE
>gi|99082671|ref|YP_614825.1| YciI-like protein [Ruegeria sp. TM1040]
MLIALIARDKPDHLQTRLDNRAAHLAYIEETGVVAQAGPLLDQNGEMVGSLVILDVEDMAAGEAWAANDP
YNKAGLFEAVELITWKKVIG
>gi|99082672|ref|YP_614826.1| hypothetical protein TM1040_2832 [Ruegeria sp. TM1040]
MAYWLFKSEPNTWGWDDQVAKGEAGEEWDGVRNYQARNFMREMKLGDRGFFYHSLKEKSVVGIVEVCAKS
HPDSTTDDPRWDCVDIKAIRPFVKPVSLDQIKSNPMLENMVLVKNSRLSVQPVTDAEWQEICKMGDTPAD
>gi|99082673|ref|YP_614827.1| hypothetical protein TM1040_2833 [Ruegeria sp. TM1040]
MEILSVIAATIAAFVAGAAYYGALAEPWMAASGVERDENGKPKGGQNPSVFAFAFLCQLVVAGMMRHVFS
LSGIETLGAGLLAGMGVGLFFITPWIALNNLYGMRPRQLTIIDGGYASLACSIMGAVLALI
>gi|99082674|ref|YP_614828.1| hypothetical protein TM1040_2834 [Ruegeria sp. TM1040]
MGKRDELIAQYAADLQNKCGVTPDMDLLTKVTIGCGPAIYNADASTVAASQPEELETVKNNFLIKKLGLS
DGPELMEAINLVVETYGKSERNKYRAVVYYMLTKHFGKESVYS
>gi|99082675|ref|YP_614829.1| S-adenosyl-L-homocysteine hydrolase [Ruegeria sp. TM1040]
MAGDYIVKDISLAGFGRKELDIAETEMPGLMALRKEYGEEKPLKGSRIVGSLHMTIQTAVLIETLVALGA
DVRWASCNIFSTQDHAAAVIAEAGIPVFAIKGQSLEEHWDYLDRSFQFPEGPNLILDDGGDATLYILLGA
RAEAGEDIISVPTSEEEEVIKAQIKKRMEQSPGWFTKMRDQIKGVSEETTTGVHRLYELVKQGQLPFPAI
NVNDSVTKSKFDNKYGCKESLVDGIRRATDTMMAGKVAVVCGYGDVGKGSAASLSGAGARVKVTEADPIC
ALQAAMDGYEVVLLEEALDADIFITTTGNKDILRIEHMREMKDMAIVGNIGHFDNEIQVANLKNHKWTNI
KDQVDMVEMPSGNRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELWTRGDQYDNKVYILPKHLD
EKVAALHLERVGAKLTKLTPEQAAYIGVKPEGPFKPEHYRY
>gi|99082676|ref|YP_614830.1| metal dependent phosphohydrolase [Ruegeria sp. TM1040]
MDQIMPAKSPRAWQRMLSGRRLDLLDPTPVDIEIEDIAHGLAFVARWNGQTRGDFAYSVAEHSLLVEELH
GRMFPKAPIKWKLAALLHDAPEYVIGDMISPVKAAVGPGYGELDDRLTSAIHIRFGLPASLPKTVKAQIK
RADKVSAWMEAVQIAGFSEAEATKFFGRPNPDLIEGLDIHLRPPVEVRRDFVSRHEALLKLL
>gi|99082677|ref|YP_614831.1| hypothetical protein TM1040_2837 [Ruegeria sp. TM1040]
MCATEHPAPTTPPSPEGGWSESISVLRNVTVVPPVESNLVQAAGLLREDGSYCAEGALWRRHRPITTEPP
KPSEFAEKISGRWLWGGVLWAHFGHFLVESTARLWALSELDAPVDGVLFIPKRPAVRDQVRGFQAEFVDL
MQRDLPIRVAADPSLVEELVIPGQGFGLGRITEATPKYRNAIHARFARDIKPEGPEKIYISRSKLGLGKG
GLLGEEQMEAFLAAEGYEIFHPQEHTLSEQLARYKAARKVIAADGSALHLYAMVGRPDQKVAMVLRRKST
AHTLLTDNVRYFCKCDPLVIGALRTEWVPKNNQRSSRLSFGELDHSVIGRALHEAGFISGGKNWPVLDDA
ARNQVLKDKGIKSDRFVESPAFRKAREEKERAERRARRAARHARRQARAAAQNDG
>gi|99082678|ref|YP_614832.1| response regulator receiver protein [Ruegeria sp. TM1040]
MAEAVQSEIGPDPSLLLVDDDEPFLRRLAKAMEKRGFAVETADCVAAGQAIVSARPPAYAVVDLRLEDGN
GLDVVEVLREKRPDSRIVVLTGYGAIATAVAAVKIGATDYLSKPADATDITNALLAGDDALPPPPENPMS
ADRVRWEHIQRVYELCDRNVSETARRLNMHRRTLQRILAKRSPR
>gi|99082679|ref|YP_614833.1| electron transport protein SCO1/SenC [Ruegeria sp. TM1040]
MMRNIAILAFASVAALLGGVWYLTLRGGASDDAFAQCRASAVAGGSAAIGGPFELVNAKGETVTDKDVIT
EPSILYFGYTFCPDVCPLDTARNAEAVDVLADRGYSTTPVFISIDPKRDTPEVVGDFAFNLHEKMIGLTG
SPEQVKAASQAYKTYYKAQEGDEDYYLVDHTTMSYLVLPEHGFVDFFRRDVSPEQMADRVACFIDNS
>gi|99082680|ref|YP_614834.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MSETTLGLMSGQKRSHWVRLRTLIVLRWVAIIGQATAIGVAQTQYDLQLSLWPCYLAIGVSALANLVAWI
VFPENKRLTEFQNFLMVLFDLLQLCFLLYMTGGLNNPFALLVLGPVTVSASVMRLRSTLIIGTSAVILVT
LLVPWHVPLQTAAGEILKMPVLFVFGHWCALVIAILFMGAYSYRISAEIRSMSDALAATQLALSREQKLT
DLGGVVAAAAHELGTPLATIKLTSSELIEELDQNPELQDDARLIREQADRCRDILRSMGRAGKDDLHLRQ
TPLSALVHEAAEPHFERGKEIRLSEHPAEGDALNQPSVLRKPEIIHGLRNLVQNAVDFAQSKVWIELHWS
AETITVRISDDGNGFPGHLIGRLGDPFMRRRAPHAERGNRPEYEGMGLGLFIAKTLLERTGARLKFLNGR
DVAMSPDLSPAQRGALVIVTWPRRKIDAVSGDTPVPTGENIPIQF
>gi|99082681|ref|YP_614835.1| hypothetical protein TM1040_2841 [Ruegeria sp. TM1040]
MQELMSVEWFILVTLCIASAAVAVWFLNPKAEAKGMEHELLIADGRTDAVFLFDDQTLIAWSSGARKFLD
DNAEDFSWGKLRDKLSRSYPGLPQSPGFLRDVGSLTLSGTAEADNREAHCEWIDGVTRIQLRRAASDIGH
VGDDQELTTLRAAVHQAPYPVWLQSDDARVTWTNLAYDRLNQKIRGRGNDTSAPLFPNLDAPMNSGRAER
ISIELPETDKKLWYNVSTTETEAGWLCHAMDVNAVVDAEIAQRNFVQTLAKTFAQLSIGLAIFDRNRQLV
LFNPVLIDLTALPASFLSSRPNMMSFFDRLRDQRMMPEPKNYSSWRHQMADLLEAAAEGRYQETWSLPSG
SVYSVSGRPHPDGAIAFLFEDITAEITLTRQFRSELELGQSILDHIDDAFAVFGADGSMVYSNTAYHTMW
KTDPDASFAKITITDACRTWQELSGPTPTWGEVRDFVAGGTSDRSDWWSRVDMRNGEQLLCRVQSLQNGS
VMVRFQQIDLPLAPPEQERFAVLKDS
>gi|99082682|ref|YP_614836.1| hypothetical protein TM1040_2842 [Ruegeria sp. TM1040]
MTQRSATFRLPSSDATTELARHIARILVPGDVVLLQGPIGAGKTHFARSLIQSLMEVPEDVPSPTFTLVQ
VYNVATGELWHADLYRLSHVDEVEELGLLAAFEDAICLIEWPEKLEDLRPASALTMELSLDEDHDDARMA
ELMWTDASWDARLEGIAP
>gi|99082683|ref|YP_614837.1| aminoglycoside phosphotransferase [Ruegeria sp. TM1040]
MTSREDEIRDFLATHGYADWNRTPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEGGDTQPFVDLAQYLRN
LDISAPEIYAEEHARGLLLIEDLGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLS
EMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVID
FQDAKLGHRAYDLVSLLQDARRDVPAQVEAQMIDHYIQATGVDESHFRSAYAVIAVQRNMRILGIFARLS
QRFGKRHYIEFVPRVWAHFERGLAHPALASAAEEILNALPAPAPEVLERLRA
>gi|99082684|ref|YP_614838.1| nucleotidyl transferase [Ruegeria sp. TM1040]
MTAPNVVMIFAAGFGTRMGALTADKPKPMIDLCGRPLIDHALTLAHALNPERVVINTHYKAEVLERHLEG
RDVLISHEDKEILDTGGGLKLARALLDASVSYTLNPDVAWRGPNPLSVLRDAWRPADMDALLLCVPTARA
VGRLGSGDFSTDSRGCIRRGGDMVYTGAQIISLDTLDRVSESAFSLNAIWDQLIPEGRATAVEYPGHWCD
VGRPEGLKLAEEMIAE
>gi|99082685|ref|YP_614839.1| hypothetical protein TM1040_2845 [Ruegeria sp. TM1040]
MFDPSQTKPRLFAVPCGVDFPRALYDGLTARFADALPEELARVELILNTERMQRRVRQLFDAGPARLLPR
ISLLSGLNKEANLRGLPPALPPLRRRLELSQLIAKLLDAQPDLAARASLYDLSDSLAELIDEMQSEGVST
DQIRALDVSDMSGHWKRAQDFIGIADQFVDMHEGALDVNARQRQVVMDLIAEWEQTPPTHPIILAGSTGS
RGTTLLLMEAIARLPQGAVVLPGFDFDQPEPVWESLTDGLVAEDHPQYRFHKLMRDLDLRPSDICRWVDT
TPQSPARNRLISLALRPAPVTDAWMSEGPYLKDLDQATEALTLVEAANPRSEALAIALRLRQAAEDGQTA
ALITPDRMLTRQVSAALDRWDILPDDSAGLPLQLSPPGRFLRHVADLFCRPLQADMLLTLLKHPLTHSGA
ERGLHLLHTRDLELHMRRNGPPFPDCESLSAFGSTRDLQPGWSDWLAQSFAGRDRTGTRALSDWVSDLRE
TAEGIAAGSQVGGTGELWDKKAGNAARDVLEELQAQSPHGGDMTARDFADLLGALLSQGEVRDRDAPYGS
IMIWGTLEARVQGADLVILGGLNEGSWPEAARPDPWLNRKLRHEAGLLLPERRIGLSAHDFQQAVAAPEV
WLTRAVRSEEADTVPSRWLNRMTNLLGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPVPTPLSPRPSPR
PPVAARPRRLTVTEIPKLIRDPYAIYAKHVLRLKPVDPLLQEPDALLRGTIIHKVLEDFIKSAQEQPENL
SARHFIDHARRVLETEVPWPVARTLWLTRLKKVAEDFVTGERQRQSRARPSGFEKSGQVRLDPLDFEIAA
KADRIDVDERGLLHLYDYKTGDPPSEKQQKSFEKQLLIETAMAEQGAFSDYGAARVERALYIGLKPPVKE
VAAPILDEPPAKVWAELRSLVEAYFDAEQGFSSRRMVHRDDFAGDYDHLARYGEWDRSSDPVPEDLT
>gi|99082686|ref|YP_614840.1| UvrD/REP helicase [Ruegeria sp. TM1040]
MSRNAASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVEPQHILCLTYTKAAASEMQNRLFQ
RLGEWAMLPDAKLRAALVDLGAEDAAIGDGLAQARTLFARAIETPGGLKIQTIHSFCSSLLRRFPLEAGV
SPQFTEMEDRAAAMLRAEIAEDMAQGPDAHVVEAASFHIGGLDFETLTAEICRRQAGFDPALDHNRLGEV
FDLPAGYDRSALQAEVFLGNEEEILSRTIEMLKSGGATDTKNADKLARITAVTPDVLPLLEDVFLTGKSA
KDPFSAKIGSFPTKKLRESNGVLMDQLEPFMARVEAARPKRLALDAMEKSIVLHDFARVFLPEYERRKQL
RGWLDFDDLIVKARNLLNDPAVAAWVLYRLDGGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADV
ERTIFVVGDKKQSIYSFQGADPDAFDRMQAEFGNRLKDTGEGLQNASLAFSFRSSAAILGLVDVVFDGEH
RAGFADDAKHQAFKSDLPGRVDLWPLVEKTDDEEERDWTDPVDRPSPRHHSVILAERIANHIKEMIAQGV
TIPEDGPERGTFQRRPVHAGDFLILVQRRSDLFSEIIRACKAAGLPIAGADRLKVGAELAVKDIAALLRF
LALPEDSLSLAEALKSPIFGWSEQQLFDLAHRRSEMHLWPALRARSEEFPQTMEILNDLRRQADFLRPYD
LIERILTRHLGRAKILGRLGTEAEDGINALLSQALAYERTEVPSLTGFLVWMQTDDLEIKRQMGAASSMI
RVMSVHGSKGLEAPIVILPDTTKRRPSPAAEVMEVDGTPLWRMSSDQMPPAMDAARVFAQEKQANERLRL
LYVALTRAEKWLIVAGAGDLDKGGDSWYQRVEAAMKTMGALPYDAPGGEGLRWAHGDWEAPVFVPSDLTE
EDEITLPEVFRRAAPAYVAPAATLRPSEDLGGAKALPGDSGLSEEDAKARGTALHLLLEHLPKLPEEDWD
NRAEAIAQHEDWKALLAEARQVLCSDDCADIFAPGTLAEVPVSADLGTVRLHGIIDRLVITPDRVLAVDF
KSNAVVPQSAEACPEGLLRQMGAYDVALRQIYPDRQIETAILWTRTATLMSLPVTLITQARERAGFQRLE
P
>gi|99082687|ref|YP_614841.1| thioredoxin [Ruegeria sp. TM1040]
MSTVAVTDATFDAEVKNSDVPVVVDFWAEWCGPCKQIGPALEELAAEYGDKVKIAKVDVDSNPNAAAAMG
VRGIPALFVFKDGQVVSNRAGAAPKAALKSWIDESI
>gi|99082688|ref|YP_614842.1| hypothetical protein TM1040_2848 [Ruegeria sp. TM1040]
MANASNIIAPAGSVAVLRAVDFFFNLRSNFADWNEARITRKALSQLSDAQLEDIGLTRADIAAL
>gi|99082689|ref|YP_614843.1| ATP-dependent protease peptidase subunit [Ruegeria sp. TM1040]
MAEDQFPGWHGTTIIGVRKGDEVVVAGDGQVSLGQTVIKGSARKVRRLSPGGYDVVAGFAGSTADAFTLL
ERLEAKLEATPGQLQRASVELAKDWRTDKYLQKLEAMLIVTDGKDLYVITGAGDVLEPEHDVAAIGSGGN
FALAAARGMMDSDRDAETVARDAMAIASDICVYTNGNLTVERIGK
>gi|99082690|ref|YP_614844.1| hypothetical protein TM1040_2850 [Ruegeria sp. TM1040]
MISRDDLRAAVGSGLLTEAQAASLSALADSRRGAREGLAPGDEPFELFKGFNEIFIVIGLVILAMGWIAV
NTASMFTEIVNYRTQATTAALFGAAILWGLSEYFIRRRRMVAPAIALSVMFAGNAAMGFVAQYAQPFMIA
QQDYSSLPMALGLSTLALFVFWGRFRVPFAMALIALGLFAVALIVAADQSGVPTELGDLFLLSANGPFAW
ITLVVGLLVFAVAMAFDLSDPHRVTRRSAQGFWLHVVAAPALVNTIALSLLTSDQGVLLALVLGCFALIA
IVIDRRSFLITAIGYIVALSTTVFDSEGTGISILALGVVLVILGAFWARIRAALLSLLSGVLPLHRLPPS
H
>gi|99082691|ref|YP_614845.1| ATP-dependent protease ATP-binding subunit HslU [Ruegeria sp. TM1040]
MTDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVHPKNILMIGPTGVGKTEISRRL
AKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTREHMREDVKAKAHKAAEDRVLEAIAGTDA
RESTLEMFRKKLKAGELDDTVIELDIADTSNPMGGMFEIPGQPGANMGMMNLGDLFGKAMGGRTTRKKLT
VAESYDVLIGEEADKLLDDETVNKAALEAVEQNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEG
TTVSTKHGPVKTDHILFIASGAFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTRQYEA
LLGTEKVKVTFTKDGIHALAQIAAEVNHTVENIGARRLYTVMERVFEEMSFAAPDRSGEEIIVDEPFVTK
NLGELTKSTDLSRYVL
>gi|99082692|ref|YP_614846.1| protein of unknown function DUF900, hydrolase-like [Ruegeria sp. TM1040]
MKNAMLVLCVFLGLSACADRDLMPIVPEAVEIGTPYTVFSTTTRAQEADGTYGFRRSEQLRMMEMTVTIP
PNHSPGELSYRYKNPDPHKNFAIAEELPVASVSDLRARFLREQRENNWPLREVTIFVHGYNSTHPETAYR
SAQMAHDVELPGSLVMYSWPSRGRAFGYAYDIDSMLFARDGLEETVRRVKQAGAERIILVAHSMGTALAM
EMLRQADLRNPGWAARTLNGGVILISPDLDVDVFESQMMDLKQVPQPFGVMVSEKDHILNISGRLRGTSE
GERLGNIKSAERLMKWPIEVIDLTAFNADAASGHFVAATSPSLLAVIRSASNVSRLFGPVDPTLFQQILP
QSQTIVTDHGKLMLARQQRQEER
>gi|99082693|ref|YP_614847.1| Smr protein/MutS2 [Ruegeria sp. TM1040]
MTRRKLTEDEIDLWQQVVKHAERLHANREKKGGDHADPPTPLPKPKPRRSAPAPLPQFEVGSKARAKLPG
HDLKASPARKLATDPLRMDEKAFRRMKRGKLKPEGKLDLHGMRMDSAHGALTRFILSAQASNKRLVLVIT
GKGKDRDEPGPMPVPRGVLRHQVPQWLTLQPLAQAVLQVTPAHISHGGEGAYYVYLRRTR
>gi|99082694|ref|YP_614848.1| MltA [Ruegeria sp. TM1040]
MTETLRHGLGAALLTAALFSGAGAQSETGPSLRILEFTELSDWDLDNHVEALRVFRETCMDMDGADWQSL
CAMAQNADDSGARAFFELFFRPVLIEDGKEGLFTGYFEPELNGARQRGGRFQYPVYRMPPEARQSSTWLS
RRDILTSGVMDGRGLEIAWVDDPVELFFLQIQGSGRIKLQDGSVIRLGYGGANGHPYRSIGQEMVRRGIY
NLHQVSAGVIQNWVRRNPGPGMELLMHNPSYVFFREVRKVPSNRGPLGAMNRSITPMRSIAVDPAYTPLG
APVWIEKNGQTKMRRLMIAQDTGSAIKGAQRADIFFGPGDEAGRQAGQLRDPGRMMVLMPIQRAYAMLPD
DL
>gi|99082695|ref|YP_614849.1| import inner membrane translocase, subunit Tim44 [Ruegeria sp. TM1040]
MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPPLASSETRAPQRKFEVIEGSPDDDIIAYVDEGSPQ
SKALSDMKRSDSSFQVAEFVQGARGAYEMILMGFETGELDGIQPFISDDIFQSFVDAVSAREDQGLTIEA
EFIGVRETSIIDATFDTATSTAEITVRFVGELTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPN
WLLVATDA
>gi|99082696|ref|YP_614850.1| FxsA cytoplasmic membrane protein [Ruegeria sp. TM1040]
MPLFLAFLLVPIIEIALFIQVGGLIGLWPTLGIVVLTAFLGTWLVKTQGRLALGQLRGSFERLSDPTEPL
AHGAMILLAGALLLTPGFFTDAFGFLLLVPGFRTRAFAYLRTKVTVASFQMGQDPRQHPQHPRKSPQGDV
IDGDYEDVTPRPRNEGPSGWVEGPK
>gi|99082697|ref|YP_614851.1| preprotein translocase subunit SecB [Ruegeria sp. TM1040]
MAENGAAEGTAQQPQVQMNILGQFIRDLSFENVMAQKGVGGEVQPDVNVQVALDAKKRSTENQYEVITKL
NIESKNKAGGEVLFVLELEYVGIFNIAGVPEDQLHPFLLIECPRMLFPFLRRIVSDISRDGGFPPLNLDN
IDFVAIYRNELARRQAEAPAEVTN
>gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQRSMPHEAFGVHGIGPDLLEPPQPP
APGQVILKDKPLFAEVGQAFLDFVRDSKMVIHNASFDMKFLNAELGWMNLPQLPMDQAIDTLAMARKRFP
GSPATLDALCRRFGIDNSNRTLHGALLDSEILADVYLELIGGRQPDFGLSAQSSGGQNAVDTNWRPAPRE
TPLPSRLTAEEKAAHDEFVGKLGEDALWAVTSE
>gi|99082699|ref|YP_614853.1| dephospho-CoA kinase [Ruegeria sp. TM1040]
MVFSLGLTGSIGMGKSTTAALFKEAGCAVWDADAAVHALYAKGGAAVTPIGDAFPEVTAAGFVDRDILKE
LISLNKSVLKVLEDIVHPLVQADRQRFRIAAEADILVFDIPLLFETGSQAEMDAVACVFVSPEMQRQRVL
ARGTMTEPQFEQILAKQMPIEEKLARSDFRIETDTMEHARAQVTAVVEDIKRRMAHA
>gi|99082700|ref|YP_614854.1| shikimate 5-dehydrogenase [Ruegeria sp. TM1040]
MTENRIPLAGVIGCPIAHSKSPQLHRHWLKTYGVDGHYMPMHVEPEDLESVVRMMPRMGFVGANVTIPHK
QSIMEIADKVTDRAKLMGAANTLIFHEDGAIVADNTDGYGFITNLHEGAPDWDAKSGPATVFGAGGASRA
VIASLIEAGVPEIRLTNRTRSRAKEVAQTFGSKVTAVDWVEAGNVIEDASLVVNTTSLGMTGQRRLRVPL
DGLHSGIVVTDLVYNPLKTELLQAAEEAGCTVVDGLGMLLHQAVPGFERWFGQRPEVNSAARDAIL
>gi|99082701|ref|YP_614855.1| Maf-like protein [Ruegeria sp. TM1040]
MSTHILLASGSEIRAKLLRQAGVDFRVEVARVDEDAIKTALEADGASPRDIADTLAEAKARKVSGKFPEE
MVLGCDQVLDFEGTLLSKPKDKNQALQQLKAMRGKRHMLLSAAVIYCDAKPLWRHVGQVRLVMRMASDAY
LESYVERNWESIRHAVGAYKLEEEGVRLFTTIDGSYFNVLGLPMLELMNYLGLQGIIEQ
>gi|99082702|ref|YP_614856.1| hypothetical protein TM1040_2862 [Ruegeria sp. TM1040]
MDLTDLMFTLYPYVKSLHIMAVISWMAGLFYLPRLFVYHVEEAEKVKDVAPIFLTMEHKLLRVIMGPASV
VTWIAGLFMVFTPGLVDWSYVWPWTKGASVLAMTWFHHWLMFRHKDFKEGKNTITGRQYRLMNEVPTLLM
VVIVVSVIFKF
>gi|99082703|ref|YP_614857.1| transcription termination factor Rho [Ruegeria sp. TM1040]
MTEQSLNLSDLKAQSPKALLAMAEELEIENASTMRKGEMMFQILRERADEGWNIGGDGVLEVLQDGFGFL
RSPEANYLPGPDDIYVSPDMIRQFSLRTGDTVEGQIKAPLENERYFALTTVTKINFEEPEKARHKIAFDN
LTPLYPDERLQMEIEDPTVKDRSARVIDLVSPIGKGQRSLIVAPPRTGKTVLLQNIAHSIEQNHPECYLI
VLLIDERPEEVTDMQRSVKGEVVSSTFDEPAARHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFN
TVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVL
DRKIADKRVFPAIDILKSGTRKEDLLVDKGDLAKTFVLRRILNPMGTTDAIEFLLSKLKQTKTNSEFFDS
MNT
>gi|99082704|ref|YP_614858.1| tRNA modification GTPase TrmE [Ruegeria sp. TM1040]
METIFALATAQGKAGVAVIRVSGPHAIEIGEKLTRRTLPARGMIFSKLKDSAGEILDEALVLSFTSPDSF
TGENIVEFQLHGSIAVVSAVMSAIEETGVARLADPGEFTRRALDNGKLDLTQVEGLADLIDAETEAQRKQ
AQVILAGTLGDLADRWRTDLIRAASLIEVTIDFADEEVPVDVTPEVKQLLSGVLHDIEKEVDGVAIAERI
REGFEVAIVGSPNVGKSTLLNALAGRTAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEG
IGIRLAQERAERADIRVFLAEEDESFSIQMREGDLRLLPKADERRSAKGAISGRTGQGVDDLVSRISDTL
RNRTAHDGIATRARHRETMNRAVLSLRQAIEVVEQGPEFYDLAAEDMRSAIRALELLVGRINVENLLDEI
FSSFCLGK
>gi|99082705|ref|YP_614859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Ruegeria sp. TM1040]
MFHVKHSHYDVVVVGGGHAGTEAAHASARMGVRTALVTLRRDGIGVMSCNPAIGGLGKGHLVREIDALDG
VMGRVADLAGIQFRLLNRRKGPAVQGPRAQADRSIYRKEMLRATEAQSNLDIIEGEVVDFLMESPTRVRG
IILDDQSEIRAECVVLTSGTFLNGVIHIGNKSSSGGRMGDRPSIKLAERLKSFELPLGRLKTGTPPRLDG
RTINWDILDSQPGDEDPTLFSFLSTNTSAPQIACGITHTNEKTHEIIRDNLELSAMYGGHIEGVGPRYCP
SIEDKIVRFADKTSHQIFLEPEGVNDHTVYPNGISTSLPEDVQVDYVRSIVGLENAEVLQPGYAIEYDYV
DPRALRSTLELRDVEGLYLAGQINGTTGYEEAAAQGLVAGLNAASHRLKQQEIVFGRSNSYIGVMIDDLI
TNGVTEPYRMFTSRAEFRLSLRADNADQRLTPIGYDLGCISEVRRSEFDRKMDAITRTKSALTSVLLTPK
QLLEAGIQVNQDGNKRNGLDVLAFPKVEFDDILPLFPELADTETSIREQVTRDSLYANYIARQEKEVASL
KRDEQYRIPRDFSYEIDGLSMELRQKLERSRPESLAQAARIDGMTPAALALMLGSLKKLSRGESKAS
>gi|99082706|ref|YP_614860.1| methyltransferase GidB [Ruegeria sp. TM1040]
MSDGRGNLELDVSRETLERLMVFSEVLKKWNPKINLVSRKSIDDLWTRHILDSIQVFDAAPEGGAWLDIG
SGGGLPGIIVAILAAEKSPDTRITLMESDLRKCAFLRNAARECGVSVTVKSKRIESAPEENCDVLSARAL
ADLDNLLGFAERHLAENGTAMFPKGANWKKEVDNARKRWRFECDEITSVTEPGAVILKIKGVERV
>gi|99082707|ref|YP_614861.1| chromosome segregation ATPase [Ruegeria sp. TM1040]
MSDFSRFGVPRIIAIANQKGGVGKTTTAINLAAALVEEGMRVLLVDLDPQGNASTGLGVEVDDREHTTYD
LLVEEAELSQVIRETDLEDLCIVPANVDLSSADIELFSNEKRSFLLHDALRQPAMTEYDWDYILIDCPPS
LNLLTVNAMVAAHSVLIPLQSEFFALEGLSQLMLTIREVRQAANPQLRIEGVVLTMYDRRNNLSQQVEQD
ARDNLGDLVFRTKIPRNVRVSESPSYAMPVLNYDPSSLGAKAYRQLAGEIIANHQDIAAQ
>gi|99082708|ref|YP_614862.1| chromosome segregation DNA-binding protein [Ruegeria sp. TM1040]
MADKKTKPRGLGRGLSALMADVNADPVSTEGGRQPRNAEILVPIEKVQANPDQPRRQFLQEDLDDLTASI
KEKGVLQPLIVRPRDGGIYEIVAGERRWRAAQAAQLHEVPVLIRDYSDVEMLEVAIIENIQRSDLNALEE
AQSYKQLMDKFGHTQEKMAEALGKSRSHIANLVRLLHLPEDVQSLVLDRKLSAGHARALITSDNASELAK
KIVKGGLSVRATESLVKKDAAGTTSSSNSRKAKPQADKDADTRALENDLSAMIRMKVSIDHKPGGESGVV
TISYETLDQLDDLCNLLSR
>gi|99082709|ref|YP_614863.1| hypothetical protein TM1040_2869 [Ruegeria sp. TM1040]
MRFIYLCLGLTSVLLAGVGVVLPLLPTVPFLLLAAFFFARSSERLHDWLLSHATFGPMILDWNERGAIGP
SAKKAATLSVAAVFSISIILNVPTHVLLIQGLTLGGVMIFIWSRPNG
>gi|99082710|ref|YP_614864.1| coproporphyrinogen III oxidase [Ruegeria sp. TM1040]
MDDWRNGGFGLYVHWPFCQAKCPYCDFNSHVVSQIDQSAWVTAYQAELRRMGELLPDRLLNSIFFGGGTP
SLMHPDTVAAVIEAARENWTFANDIEISLEANPGSVEAGRFAGYRDAGVNRISMGIQALNDEDLRRLGRI
HSVEEARKAFDVARNCFDRVSFDLIYARQGQTLNAWKAELSEALSMAIDHLSLYQLTIEDGTAFGDRYAR
GKLRDLPTDDHAADMYLATQEICELYGLPGYEISNHARPGAESRHNLIYWRYGDYVGIGPGAHGRITLNG
TRFATEAPRAPGAWLSAVEQGNGLLPFDALNSEDQVNEHMMMGLRLFEGVDLDRHTALAQKPLSPSKIQE
LCNLGMLDLDGSRLRATSQGRAVLNAVLRELLTD
>gi|99082711|ref|YP_614865.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Ruegeria sp. TM1040]
MTRKFNGDTLLVATHNEGKLGEITEILAPFGVKVVGAGELNLPEPEETEDTFVGNARIKAHAAAKATGLP
ALSDDSGITIDALDGAPGVYTADWAETNNGRDFMKAMTRANDEITAKGPDAPRTAQFRCTLVLAWPDGHD
EVFEGVMAGSLVWPIRGEGGFGYDPMFMPEGYDVTCAQLDKDEKNRISHRGRALAKFVQGCFGG
>gi|99082712|ref|YP_614866.1| RNAse PH [Ruegeria sp. TM1040]
MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT
NTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGGTRCASITGGWVALRLA
VNKLMKAGDVTMDPLVDPVSAISCGIYAGQPVLDLDYPEDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFS
RDQMNELMDLAAKGTSELAEMQKAACA
>gi|99082713|ref|YP_614867.1| heat-inducible transcription repressor [Ruegeria sp. TM1040]
MTDANSILQDMNDRSREVFRILVENYLDTGGPVGSRTLTRSLSEKVSAATVRNVMQDLEYLGLLDSPHVS
AGRIPTQMGLRLFVDGLLQMGDPSRQDREMIDRTLGDNSSDVGGMLDRVGAALSGVTHGASLVLTPKHEA
ELRHIEFVSLAQDRALVVLVFSDGHVENRLFTPPPGQTPSSMREAANFLNALIEGRTLSDVRKDVQGEIE
RRRQEIDSLAHEMIESGLAAWEDEGSDQARLIVRGRANLLSEDGAPDELEKIRSLFDDLERKRDIAEFLE
LTEEGDGVRIFIGSENKLFSLSGSSLVVSPYMNADRKIIGAVGVIGPTRLNYGRIVPIVDYTAQLVGKMV
SDRS
>gi|99082714|ref|YP_614868.1| GrpE protein [Ruegeria sp. TM1040]
MAEPKNEDFLDDIEAAEAEELSAQTEEFDDEALELDSLRAERDDYKDRFMRALADAENARKRGDKARREA
EQYGGSKLARDMLPVYDNMKRAVEAATEEQKAVSAALIEGVELTMRALLDVFQKHGIQVVSPEVGDRFDP
QVHEAMFEAPVPGTKAGDIIQVSAEGFMLHDRLLRPAQVGVSSTPAS
>gi|99082715|ref|YP_614869.1| DNA mismatch repair protein MutS [Ruegeria sp. TM1040]
MSVTPMMAQYLEIKAQYPDALLFYRMGDFYEMFFEDAVNAAEALDIALTKRGKHEGEDIPMCGVPVHAAE
GYLLTLIRKGFRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTLTEDSLLEARRHNFLVAYSELRDQ
AALAWADISTGAFHVMPVARVRLSPELARLAPSELIVADGPIFDATLPLAEEYKIPLTPLGKASFDSTAA
EKRLCHLFNVSALDGFGTFNRAEISAMGAVVDYLEITQKGKLPLLQPPLQESEDRTVQIDASTRRNLELT
RSLSGGRAGSLLSVVDRTVTPGGARLLEQRLSSPSRNLDVISARLEALDTIVEDPIRCDTLRGLLRKTPD
IDRALSRLALDRGGPRDLAAIRNALSQGEDIERALQDPDLPTLLRDAAHSLEGFQDLLSLLDAALIAEPP
LLARDGGFIAAGYDRELDEARTLRDEGRSVIAGLQKKYAEHTGISSLKIKHNNVLGYFIETTSTHAAKMQ
SAPMSDTYIHRQTTANQVRFTTVELSEIETKILNAGNLALEIEKRLYQRLSGAILDSAARLNQAARGFAE
IDLVTALADLARAENWTRPRVDTSRAFHVDGGRHPVVEQALRHQGGDSFVANDCDLSPQDGAAIWLLTGP
NMAGKSTFLRQNALIAVLAQMGSYVPAEAAHIGMISQLFSRVGASDDLARGRSTFMVEMVETAAILNQAD
DRALVILDEIGRGTATYDGLSIAWATLEHLHEVNRSRALFATHYHELTQLATKLTGVENATVSVKEWEGE
VIFLHEVKKGAADRSYGVQVAQLAGLPASVVARARSVLDMLEKSSREGGGAGKVQIDDLPLFAAAPAPQP
KPAQGPSPVEKLLEEIFPDDLTPREALETLYRLKDVSKG
>gi|99082716|ref|YP_614870.1| flagellin-like [Ruegeria sp. TM1040]
MTSINTNPGAEIALRVLSDRQVEKEEVQEDVSTGKEVDKAKDSAAIWAISEIMGSDLAGFEATSKGLNIG
EATVAVASAGAEQITSLLTDMKELTIQANSGVSDYSKIEEQLAQKTEQINTIISSSGFNGVNLLATDTDG
NGGTSLTVAASQDRSGDDAPTLSSITVDSVDFEGSASFDINNRTTVTDAASARTALGEIEGFLRYATEGA
ASLGAGAQQMAEQDVFLDKLSDAVRLGISELTDTDMEDAATRYEALSVQEQLSGLSLSIANASPGSLRSL
YS
>gi|99082717|ref|YP_614871.1| malic enzyme [Ruegeria sp. TM1040]
MPKAKITDEEALAFHLEPSPGKWEVTATVPMTTQRDLSLAYSPGVAVPCEAIAENPETAYDYTNKGNLVA
VISNGTAVLGLGNLGALGSKPVMEGKSVLFKRFADVNSIDIELDTEDPDEFIKAVRLMGPTFGGINLEDI
KAPECFIIEQKLKEEMDIPVFHDDQHGTAVICAAGLINALHLSGKKIEDVRIVLNGAGAAGIACIELLKS
MGARHENCIVCDTKGVIYQGRTEGMNQWKSAHAVKTELRSLEEAMNGADVFLGVSVKGAVTQDMVKSMAD
NPVIFAMANPDPEITPEEAHEVRVDAIVATGRSDYPNQVNNVLGFPYLFRGALDIHARAINDEMKIACAH
ALARLAREDVPDEVALAYGKSLSFGRDYIIPTPFDPRLIHRIPPAVAKAGMDTGVARRPIIDMDAYEHGL
RGRMDPTQSILRGLNARARAAQSRMIFAEGDDPRVLRAAVTYQRSGFGKALVVGRQDDVKAKLEEAGLGD
AVRELEVVNAANTHHFETYKDFLYERLNRKGFDRKDIHRLVGRDRHVFSALMLAHGHGDGLVSGATRKSA
HVLDRINHVFDADAEHGAAGVTALLHKGRIVLIGDTLVHEWPDENDLATIAERAAGVARHMGLDPRVAFV
SFSTFGYPVSERAEKMHIAPTVLDKRGVDFEYEGEMTVDVALNAKAQEHYPFQRLSGPANILVVPARHSA
SISVKLMQEMGGATVVGPILSGVDKPIQICSTTSTANDVLNMAVLAACNIG
>gi|99082718|ref|YP_614872.1| PfkB [Ruegeria sp. TM1040]
MAIWNLGSINIDMVYSLPHMPQPGETLAATSFDQGLGGKGANMSVAAARAGAHACHIGAIGPEGKWCVDR
LMEYGVDTRHIVQSDTATGHAIIAVDPAGENQIILYPGANRGLGADQIGQALSAANAGDILLMQNETNMQ
AEAAEMGRKLGLRVAYAAAPFDAAAVQAVLPFVDLLFLNEVEAAQLQDATGKPPQDLGVDDVIVTLGAEG
ARHFDGRTGAVSDVAAQKVTAVDTTGAGDTFTGYVLAALDRGLPMAQAMAQASRAGALMVTRHGAADVIP
DLKEVQDAKF
>gi|99082719|ref|YP_614873.1| peptide methionine sulfoxide reductase [Ruegeria sp. TM1040]
MGRLDTLKHFTLAALIIVGVLTKGSALRAQTQDTLIVAGGCFWCVESDFESVRGVSEAISGYTGGTTENP
TYKQIGSGRTGHYEAVKILFDPTIVSRESLLDLFFRSIDPTDTGGQFCDRGAPYRTAVFVSNEDEKAIAQ
AVKAEAEAELGQQIVTPILEASPFYEAEAYHQDYYKGEGLVLTRFGPLRQSKAYVRYRKACGRDARIAEL
WGRDAPFIGSYGF
>gi|99082720|ref|YP_614874.1| sterol-binding [Ruegeria sp. TM1040]
MLEQIATDIRKGLDGKSFDGSLKFDCGSDGVIVLDNGRVTTDELSTDCTLRLSTENLKKLLRGQLNPMTA
VMMGKIKISGDMGVAMKLGKLIG
>gi|99082721|ref|YP_614875.1| hypothetical protein TM1040_2881 [Ruegeria sp. TM1040]
MKPLLVSALMVVCGSAALADFEICNETGNEAFASIGYKDGEEWVSEGWWTLQPGECAIPIVGDLKNRYYY
IRAESKTGNWTGDYSFCYINDVFTIRGDENCTARGYKTGGFFEVDTGNSLDWTQNLTD
>gi|99082722|ref|YP_614876.1| hypothetical protein TM1040_2882 [Ruegeria sp. TM1040]
MSMDDDFEEEFLEEDLEEELDMFVEAQDAVWTDVVTELKAGKKTSHWMWFVFPQLASLGQSHMSQLYGLE
DLNEAQAYLAHPVLRERLIAACDLMLARNGTTAAEILGEIDAKKLRSSMTLFGAVTDAPKQCGEIIKVFF
EGTPCPLTLGEIG
>gi|99082723|ref|YP_614877.1| argininosuccinate synthase [Ruegeria sp. TM1040]
MSAPKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFTADLGQGEELEPARKKAELLGIKPENIFIEDIREE
FVRDFVFPMFRANAVYEGLYLLGTSIARPLISKRLVEIAEATGADAVSHGATGKGNDQVRFELSAYALNP
DIKVIAPWREWDLTSRTKLLEFAEANQIPIAKDKRGEAPFSVDANLLHTSSEGKVLEDPAEMAPDYVYQR
TVNPEDAPNEPEFIEITFEKGDAVAINGEAMSPATILTKLNEYGRKHGIGRLDFVENRFVGMKSRGIYEA
PGGDILLEAHRGIEQITLDSGAGHLKDSIMPRYAELIYNGFWYSPEREMLQALIDESQKHVTGTVRVKLY
KGSAKTVGRWSEHSLYSEAHVTFEEDAGAYDQKDAQGFIQLNALRLKLLAARNRRVK
>gi|99082724|ref|YP_614878.1| hypothetical protein TM1040_2884 [Ruegeria sp. TM1040]
MTGWKIFSHSLGMVLRNLGWAVQIALVPVLIAVVCIAALLWTHVGELIASMGRQGYVPSGAFITSILLSV
AIFIMAQLWVFVNWHRFVLLEEYPTSWFPTIHGDRMLAYFGTGLLLGLIMALAWIAGGIFSSVGSVLGSP
VISLLILFIVMVGVGLLFFRLMPTLPAAAIGNTLSLRESWEATKGTAGTAVVLFIVLVGIQIVLQAVTNL
SIYIFAPLGLVFALVSALIMTLVNVSILTTVYGHYVQGRSI
>gi|99082725|ref|YP_614879.1| threonine dehydratase [Ruegeria sp. TM1040]
MTNFRTQAKAAEAAMRDVFPPTPLQRNELLSQRFGAEIYLKREDLSPVRSYKIRGALNAMRKQTSKDLFV
CASAGNHAQGMAYMCRQMDKRGVIFMPVTTPQQKIQKTRMFGGDNVEVHLIGDYFDDTLSAAQAWCAEKG
GYFLSPFDDADVIEGQASIAVEIEAQLGKAPDHIVLPVGGGGMSSGVVRYFGEDVHALLVEPEGGACLKA
ALEAGHPTPLNRVDTFVDGAAVGKIGERPFDILRSVPLPDVLTVSEDRICTTILEMLNVEGIVLEPAGAL
AVEALGDLRTWIKGKTVVCLTSGGNFDFERLPEVKERAQRYSGVKKYFLLRLPQRPGALKEFLNILGPDD
DIARFEYMKKSARNFGSVLIGIETKRPENFAPLFAQLDAAGFTYTDITNDETLAQFVI
>gi|99082726|ref|YP_614880.1| Hpt protein [Ruegeria sp. TM1040]
MCLARSCWKKTMIDWPRVRELKEEVGDDGFEEVIELFLEEVEDVINKLKSGDRSQLEQDLHFLKGSALNL
GFQEFSDLCFQGERMAATGQADAVDLTRVMSSYTASKTSFLQNVRELA
>gi|99082727|ref|YP_614881.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. TM1040]
MLPEHSIEGEDVPVSGSIRRVLVVDDSRLQRRILVASLKKWGFDVVEAESGEDAMDICRADPPDLILSDW
MMPGMNGIEFCRAFRADSHETYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERILR
MQRELFEKNRIVSETLDELQTVYDAIDKDLIQARKIQESLVPELTRAFGASEVNLLLKPCGHIGGDLVGM
FSPGINRLGFYSIDVSGHGITSAMMTARLGGYLSSTYFDQNVGMEKKFNRFYALRPPEEVASVLNARLIA
DTGIEEYFTMAYCIADLRTGVIKMVQAGHPHPLLLRADGSMEFIGKGGVPVGLVPDVAYEQEEFVMEKGD
RLLLYSDGFTEAHLKDGSMLDTEGLVELVNRCDPRRSGKEFLDDLYWHLTQVMGDDKGLEDDISATLFEF
QGP
>gi|99082728|ref|YP_614882.1| NUDIX hydrolase [Ruegeria sp. TM1040]
MIRRFGEVPRRDQTYRLRPGAYALLPRDGQLLLTCQYSPAPDIQLPGGGIDPGESPLPALHREVYEETGW
AIASPRRIGAFRRFVYMPEYDLWAEKLCHIYCARPVLQRSAPVEAGHRALWMPVNDAVSVLGNAGDRHFA
ALLARYV
>gi|99082729|ref|YP_614883.1| Hsp33 protein [Ruegeria sp. TM1040]
MTLGSKIAWDDTVLPFQLDASDMRGRVARLDGVLDGILKQHNYPQPVEALVAEMALLTALIGQTMSLRWK
LSLQVQSKGAVRMIATDYYAPEKEGEPARIRAYASFDADRITDGAPFAQLGDGYFAILIDQGGGTKPYQG
ITPLAATSLSECAQAYFAQSEQLPTRFSLSFGKSSEPGKPEHWRAGGIMLQHMPKASPFAAEASGTGDVL
TASDLVSGEEEENWNRVNILLETVEDLELIGPSVSPSELLLRLFHEERPRVYDAQSVRFGCTCSEERVRQ
SLSIYSAKDIGTMTTEDGRVTADCQFCGAHYDLDPATVGFDAAGD
>gi|99082730|ref|YP_614884.1| NUDIX hydrolase [Ruegeria sp. TM1040]
MSALAETIAKALTRARTETSDFDLNPETVLPAGRKLRPAGVLVGIETYGAVPQVVLTKRSSVLKHHPGQI
AFPGGKVDPTDNDATAAALREAWEEIALPRELPRILGHLPCHETVTGFQVTPVVAVIDQPFEARAEAGEV
AEVFRVPLSHVLDIERYQIQSRRWRGTKRFYFAVPFGPYYIWGATARMLRGFAAIMDTR
>gi|99082731|ref|YP_614885.1| polynucleotide adenylyltransferase region [Ruegeria sp. TM1040]
MKIDEPWLHSPATRKLCDALTSAGAEIYFVGGCVRNALLGEPVSDLDLSTSATPQYVTEAAEQAGLKVIP
TGIEHGTVTVVVDGDPFEITTFRRDVATDGRRAVVAFATEILEDARRRDFTMNALYARPTGEIVDPLSGF
EDLRARRVRFIGDATRRIQEDYLRILRYFRFHSWYGDAEAGFDPEALAAIAATQEGLDHLSRERVGAEIM
KLLSSSNPAPSVATMRQIGVLAHVLPGADDRALAPLIHLEADLPAEAETRLAALGGEDLQNTLRLSKASA
ARVTLLRTLATGTATAAEIAYRQGVDTAKRAMMLRSALFEMPVLPDLESDIALGAVAEFPISAKDLMPHV
QGAALGRALRTLEAEWIRSGFQSDRETLLKRLPDLN
>gi|99082732|ref|YP_614886.1| ABC transporter related [Ruegeria sp. TM1040]
MFRFFENLINPYCDYPETDVPPTRLWPFMREYARPFRSVFWMAGLMSIVVAAIEVGLISYMGRVVDILAG
PPEEVWATHGTELIGMALFILLVRPVLQLVDVLLLNNTILPNFGTLIRWRAHKHVLRQSVGWFENDFAGR
IANRIMQTPPAAGEVVFQVFDAITFALAYLIGAAVLLWGADPRLLMPLIIWFVLYAALIRWTIKRVGPAS
QAASDARSTVTGRVVDSYSNIHSVKMFAHHSRELDYAKDAIENTRRTFQAEMRIFTIMDGVLVLLNGLLI
VGVVGWGIALWMQGLASVGVVAAATALTLRLNAMTGWIMWALTSFFRQLGVVAEGMETIAQPIELVDTED
AKPLHLSKGEITFDALSHHYGRGAGGLDRLNLTIHPGEKVGLVGRSGAGKSTLVMLLLRFYDPEEGRILI
DGQDISQVLQDSLRQHIGMVQQDSSLLHRSVCDNLLYGRPDASEEEMIAAAQKAHAHDFILDLEDPQGRK
GYDAHVGERGVKLSGGQRQRVTLARVILKDAPILLLDEATSALDSEVEAAIQETLYGMMEGKTVIAIAHR
LSTIAQMDRILVLNEGKIVEQGTHEALLSEGGLYAQFWARQSGGFLNIEAAE
>gi|99082733|ref|YP_614887.1| ABC transporter related [Ruegeria sp. TM1040]
MKLGNLIDAFQPADGPPPQTLGAFLRWCLSGAWPMLVIAAICSALAGGMEAGTAFILGKVIDTAIASGPE
GFFGANIGVIFAALAFFLLLRPLLFGLSAATNAIILQPNVNPLVLSRLNRWTLGQSVRFFDDDFAGRIAQ
KQMQTASAVTSVVTEVINVVAFALASLVGAMVLLGSVDLRITLLFVVWLVAYFALIRWFLPRIRKKSAHR
AGARANVSGQVVDTITNIKTVQLFAHSAHEERSAQDAMVTFRDRALEFGYLSAAFRFCLMTLAGVLPVLL
IGAALWLWQNGSASEGDIVAAGAVSIRIAQMTGWVSFTLMAIYSNVGEVENGMKTLTRPDRIEDRQDAEG
LRVTSGQIVIEDLGFRYGRDIGGISDLSLAIQPGEKLGIVGASGAGKSTLVSLLLRLYEAEKGHILIDGA
DISRVSQDSLRSQIGMVTQETAMFNRSALDNILYGRPDASRDDVIAAAKAAEADAFIADLEDAQGRTGYD
AFLGERGVKLSGGQRQRIALARAILKDAPILVLDEATSALDSEVEASIQSALTRVMDGKTVLAIAHRLST
LTEMDRIVVMDQGRIIEQGSHEQLLERNGLYAQFWNRQSGGFIRTQDAPSAAAQ
>gi|99082734|ref|YP_614888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruegeria sp. TM1040]
MTDAARTTATIERLGHQGDGIAPGPIYVPRTLPGERVTGVLEGQNMTDIRIEDPSEHRVQAPCRHYKSCG
GCQLQHVSDEFVAQWKVEIVRNALLSRKLETDFRPIQTSPTHSRRRATLTVKRTKKGAMAGFHGRASDVI
TAIPDCHLLAPELIAALPMAEDLALIGASRKAPLSVTITTSQAGLDVLVKNGKPLDGPLRIQLAQAVDRH
SLARLTWDDELLAMEQSPTQAFGGANVCPPPGAFLQATPEGESALVAAVREGVGDARRIVDLFAGAGTFS
LPLAQTAEVHAVEGEREMMQALELGWRKAQGLKKVTTETRDLFRNPLLVEDLRQFGKVYDAVVIDPPRAG
AEAQIAQLAKAKLPLISYVSCNPVTFARDAEVLVAAGYKLNWVQVVDQFRWSSHTELAASFSLT
>gi|99082735|ref|YP_614889.1| Ion transport protein [Ruegeria sp. TM1040]
MIDRLKSVLDSDGFSRFITAVILVNAVTLGMETSDTIMQRMGQLVLLIDKVCLIIFVTEIAAKLLVRRHR
FFLSGWNIFDFLIVGVALVPGAQGFSVLRALRILRVLRVISVAPRLRRVVEGFITALPGMGSVFLLMAII
FYIGAVMATKLFGDSFPDWFGSLALSAYSLFQIMTLESWSMGIVRPVMDIYPYAWAFFVPFIMVTTFAVV
NLLVGLIVNSMQDAHSEEEGERTDAYRDQVLSRLEAIEASLARLQDDKTQK
>gi|99082736|ref|YP_614890.1| ErfK/YbiS/YcfS/YnhG [Ruegeria sp. TM1040]
MLATLGAAGCSSGPQIRRYNGPPVTSIVVNKGSRKMYLLNESKVLTEYKVGLGFAPVGHKQVEGDGRTPE
GTYLIDRRNPRSQFYLSLGISYPNSADRAHARSLGASPGGDIFIHGEPNDRADRRRAARVRDWTAGCIAV
TNDEIEEIWSMVNNGTLITLRA
>gi|99082737|ref|YP_614891.1| Allergen V5/Tpx-1 related [Ruegeria sp. TM1040]
MGRSHRTLLGFRMTRVFLILATLTSFVLAACTTGNDGSATGSGVYKIRNEERTQFRMLDSVNALREAAGN
PPVQLDSKLNAAAATHSRDMSVQNRPWHFGSDGSSPLDRVARVGYEGTLLGENISETYENEVQTLTAWME
DGGTRAVIMDPNARNMGFSWFQEQNGKIWWTLLMAQ
>gi|99082738|ref|YP_614892.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MTRKIPFLTSRRQFLAGSASLLASPALGQSLPDVEEPAFDPLRPPPEPEPNVKRNISSFRAKSWKPYFDN
LRRGAILVDIDSRALHFWSEDQSVYKLFPSSVPLSDDLTRRGRTRVVRKVEGPSWAPTPNMRKRNPEWPA
YIPPGPDNPLGSHALYLSWQYYRIHGTHDTRKIGRKSSNGCIGLYNEHIAELYKLTRSGTQVLLI
>gi|99082739|ref|YP_614893.1| hypothetical protein TM1040_2899 [Ruegeria sp. TM1040]
MKKLVIAAALVAAASAASAGNLAEPIVEAPVIIEEATGSSSGMLLPLLLLVIVAAAAASN
>gi|99082740|ref|YP_614894.1| ferrochelatase [Ruegeria sp. TM1040]
MLDATSTATRPDNAPADHPPVKAEKVGILLANLGTPDHYSYWPMRRYLNEFLSDKRVIDYPSWKWQPLLQ
LIILTKRPFASGEAYKSIWNHERGESPLMTITKDQTNAMAKAMEELYGDQVMVDFCMRYGNPSTKSKVEK
MIAAGCRKILFVPLYPHYAGATSATANDQFFRVLMEQPWQPAVRTIEPYFDQPEYIDALARSVEDAYAKL
DKTPDILVCSYHGMPKRYLMQGDPYHCQCQKTTRLLRERLGWDESKIMTTFQSVFGPEEWLRPYTVEHVA
ELAKQGKKNIAVIAPAFSADCIETLEEINEEIFESFEHAGGEEFTYIPCLNDSEAHIAALSSVIRNNLKG
WLEA
>gi|99082741|ref|YP_614895.1| hypothetical protein TM1040_2901 [Ruegeria sp. TM1040]
MTKEPMAHPQIFDRDALRLRRARRKPEAMFLHDMARDEIEDRLSMVKRVFTKPAIIAPFAEPWKDLLPGA
KIVEDHDVLDLEPQAHDLVIHVMALHCANDPVGQLIQCRRALQEDGLLLVVTLGGQTLHELRSALAEAET
YVSGGLSPRVAPMGEIRDLGALLQRAGFALPVADLVPLTVHYRDLTHLMHDLRAMGETNTMSDRLRTPTR
RSLFHLADHIYAQNFAADDGKRMATFELVCLTGWSPADSQPQPLRPGSAKTRLADALKVPEVKLPDSER
>gi|99082742|ref|YP_614896.1| competence protein F, putative [Ruegeria sp. TM1040]
MTLRARIQTAVSLVYPARCLNCGGLVESDFGLCGACWRDTTFISGLVCEGCGAPLPGEDDGQMVHCDACL
RAPGEWDRGRAALVYTGQGRRLVLALKHGDRTDLVRPASAWMARAARVLLSPKPLLVPVPLHWTRLLHRR
YNQSALLAQAIAAREECDCCPDALIRVAKTPMLEGYSRSERRALLSDAIRPNPRMASRLKGRRVLLVDDV
MTSGSTLSACARACMDAGAKSTNVAVLARVTGS
>gi|99082743|ref|YP_614897.1| glutaredoxin GrxC [Ruegeria sp. TM1040]
MKPVEIYTSPLCGFCHAAKRLLNQKGVSFSEVDVLANPDRKSEMIQRANGGRTVPQIFVGDIHVGGCDEL
HALDRAGKLDSLLAS
>gi|99082744|ref|YP_614898.1| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Ruegeria sp. TM1040]
MVRIALLQMTSSDLPEENLAAAREMIARTAAAGAQFVLTPEVTNCLSTSRTQQQAVLHPEENDPTLAGLR
DAARQHGVWLSIGSLGVKTTDADGRFANRQFLISPDGEIKARYDKIHMFDVEVTPEETYRESDGYRPGTR
AVLADAGFAKIGMTICYDVRFPALHRRLAQAGAEIITAPAAFSHVTGAAHWHSLLRARAIETGCFVLAAA
QTGVHDTSRGAARQTYGHSLAVAPWGEILADAGTETGITCVDLDLEAVKKARKRVPSLTHDREFDGP
>gi|99082745|ref|YP_614899.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MDEKHSLAISLFSEILMADQLARARLSKALPKGMELSHFSVLNHLTRAGLERSPAQLAKTFHVTRGAMTN
TIYKLEVAGFVHVRPDWDDARRKMVAISPAGRKARDAALASIIPMISEVVSELGGDRVRAALPILREFRG
KLEVGE
>gi|99082746|ref|YP_614900.1| 3-demethylubiquinone-9 3-methyltransferase [Ruegeria sp. TM1040]
MQAQQSTVDPSEIAKFEAMAAEWWDPNGKFKPLHMLNPCRLDYITSQIAGEFDRDLKTDAPFAGLRILDI
GCGGGLLSEPMARLGAEVVGADAAEGNLPVARIHAEQSGLEIDYRHTTAEAMAEAGEQFDVVLNMEVVEH
VADPLSYLTATQQLLKSGGLQICSTINRNPKSYAMAIFGAEVVMRWLPRGTHEWSKFITPDELFALLEQA
GLNPVDRKGFVFNPILWKWSISDRDLSVNYVTASTKS
>gi|99082747|ref|YP_614901.1| prolyl aminopeptidase [Ruegeria sp. TM1040]
MDKYPDQKRAVQFLYPPIEPFDQRMLDVGQGHRIYMEQCGNPDGVPVIVCHGGPGGGTSPAMRRYFDPKV
YRIILFDQRGCGRSRPYASCEDNTTWHLVADMELIRELLEIDSWMLFGGSWGATLALIYAQTHPERTTQL
ILRGVFLMTEAELDWFYGGGAGKFWPETWAKFTDLVPKDERDDLIAAYHKRLFSGDRDEEIRFGRAWSAW
ENALASVYSNGLSGESPGDYARAFARLENHYFSNGGFLHMDGQILANMGRIAHIPGVIVQGRYDMICPPQ
AAYSIHQAWPNSDLIMVRNAGHALSEPGISAALVRCMDQLAEEMTQ
>gi|99082748|ref|YP_614902.1| peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein [Ruegeria sp. TM1040]
MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLTEVAPDGVLRA
ELASAWRSDETARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALRLEGVKNLDLSSDGAVVIDLA
ESNPHLPYRLADTGLVIAPDGAVDAVLGDLNGTGLYQVDRAQEDRHFRARRVAQNYRDEVAGWLDALDLI
VIPDAQVRAEALRDGFVDVAALPTAEGLQGRFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERW
WMV
>gi|99082749|ref|YP_614903.1| hypothetical protein TM1040_2909 [Ruegeria sp. TM1040]
MTNDLIAKAAIDRRLAEIITPVIEDLGYELVRIRLMSGKTTTLQIMADRPDGGIEVDDCAAISNAVSATL
DVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGELAGIEDDEVLINIEEH
GETVTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGVLNEDAFDDIETEGSAEGTTGSEEENK
>gi|99082750|ref|YP_614904.1| transcription elongation factor NusA [Ruegeria sp. TM1040]
MAITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKATFTRVRTV
VEDEELENYQSELTVAQAKQYMEDPKVGDTIVDEVPPVEMGRIAAQSAKQVILQKVREAERDRQYEEFKD
RNGTIINGVVKREEYGNVIVDIGSGEGILRRNEKIGRESYRPNDRIRCFIKDVRREPRGPQIFLSRTAPE
FMAELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDI
IPWNEDQPTFLVNALQPAEVSKVVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEE
ESARRQKEFEARTALFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDY
LEAKAKAALDNARSMGVEDSLIDFDGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTTVNGERVKDEG
ILEPFDVSLEEAQNLVMTARIMLGWVDPAELESDADDLEEEAEGEAEA
>gi|99082751|ref|YP_614905.1| hypothetical protein TM1040_2911 [Ruegeria sp. TM1040]
MTRGGAEKSRNDGPERKCLATGETQPKAGLVRFVLGPDNQVYPDVMGKLPGRGVYISATRSALEQAVKKK
LFARGFKAQVAVRDDLADEVERQVLRRTVDLIRLARKSGDAVGGYEKVKDWLDKEEARVLIQASDGSGRG
KSKLSTPHRGKYIGCMTADELGMAFGRETVIHAALASGGLSQRVVEEAQRLQGLREMGGIGRTEG
>gi|99082752|ref|YP_614906.1| translation initiation factor IF-2 [Ruegeria sp. TM1040]
MSDSDGKKTLGLRGSGSRPGNVKQSFSHGRTKNVVVETKRKRVVVPKPGAGKGGAGGVAAGDASRRPAGI
SDAEMDRRLKALQAAKAREAEEAAQREAEEKARAEERERRRAEQEAKEREQREAEEKARQKAEEEERKRQ
EEAEAAKKRAAADKAAAAAPKSDAGVAPARPAPGGAPKPAAGPRKAEREREERGRGAKGRNDGGRRSGKL
TLSQATGGEGGRQRSVASMKRKQERARQKAMGQVEREKIIRDVQLPEAIVVSELANRMAERVADVVKALM
NMGMMVTQNQTIDADTAELIIEEFGHNVVRVSDADVEDVIKEIEDKEEDLQPRPPVITIMGHVDHGKTSL
LDAIRDAKVVAGEAGGITQHIGAYQVTTDSGAVLSFLDTPGHAAFTSMRSRGAQVTDIVVLVVAADDSVM
PQTVEAINHAKAAGVPMIVAINKIDKPAADPNKVRAELLQHEVIVEAMSGEVQDVEVSAHTGQGLDELLE
AIALQAEILELKANPNRAAQGAVIEAQLDVGRGPVATVLVQTGTLRQGDIFVVGEQYGKVRALINDKGER
VKEAGPSVPVEVLGLNGTPEAGDVLNVTETEAQAREIAEYREQAAKDKRAAAGAATTLEQLMQKAKEDEN
VSELPILVKADVQGSAEAIVQAMEKIGNDEVRVRVLHSGVGAITETDIGLAEASGAPVMGFNVRANASAR
NTANQKGVEIRYYSVIYDLVDDVKAAASGLLSAEIKENFIGYAEIKDVFKVSNVGKVAGCLVTEGVARRS
AGVRLLRDNVVIHEGTLKTLKRFKDEVAEVQSGQECGMAFENYDDIRPKDVIEIFEREEVTRTLD
>gi|99082753|ref|YP_614907.1| hypothetical protein TM1040_2913 [Ruegeria sp. TM1040]
MISPGWQDQSEQQESPRDFGIETGVAAPELDAANVPEHHVHRFPRGTYQQLHCQGRQCTRSRLNGYGSFI
TGTINFGPETRLAASSSVFLSSGQCHQP
>gi|99082754|ref|YP_614908.1| mutator mutT protein [Ruegeria sp. TM1040]
MSTDKKVVLVSAVALIDVEGRILLAQRPEGKSMAGLWEFPGGKVEAGETPEVALIRELQEELGINTWSSC
LAPLTFASHSYEKFHLLMPLFACRKWEGIPQAREGQVLKWVRPQELRDYPMPPADIPLITILRDWL
>gi|99082755|ref|YP_614909.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Ruegeria sp. TM1040]
MAKSLPRSPLAPAAFPDLPEIGGLRFAATAAGVRYQGRTDVMLAVMDPGTSVAGVFTRSATRSAPVLDCQ
AKLGSNPEHGTAILVNSGNSNAFTGHYGQTSVAEITSAVAATTGLPQDRVFTASTGVIGEPLPHERILTK
LDELNGALSGSAIKDAAEAIMTTDTFPKGAATTITIDGKPVQIAGIAKGSGMIAPDMATMLVYIFTDAAY
DQDKLQALLSAQNETSFNCITVDSDTSTSDSLMLCATGASGVDATDNEAFGEALREVMLDLAHQVVRDGE
GATKFVEIQITGAANDAEAKVHGLAIANSPLVKTAIAGEDPNWGRVVMAIGKSGAQADRDRLSISFGDVL
VAEKGWVAPSYKEDLGAAEMKKDEITLKVDLGIGTGVATVWTCDLTHQYITINADYRS
>gi|99082756|ref|YP_614910.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
MRKGLTFLQGVVFATAFGLAAPAFAELNANTVVATVNGEDITVGNMIVARAKLPAQYQSLPDDLLFKALL
DQLIQQTVLKQQLHGDIPEYVRLSVEHEQRSLLASDVIEAVMEGAQTEDAIRDAYDARYSSDDGGDEFNA
SHILLESEEAALEIKSQLDEGADFAALAKESSTGPSGPNGGALGWFENGRMVPEFEAAISDMRSGEVSGP
VQTQFGWHIIKLNDRRKLEAPEYEDVRDEIAQELAQQAVEDRISQLTATATINRPEIENLEPSVLRDMSL
IEN
>gi|99082757|ref|YP_614911.1| preprotein translocase subunit SecA [Ruegeria sp. TM1040]
MLGIGTLAKKVFGTPNDRKIKATRPLIAKINALEPEFEALSDQGIKDKTEDLRKRALAGESLDDLLPEAF
ANVREAARRALGLRAFDTQLMGGTFLHQGNISEMKTGEGKTLVATFPAYLNALTGKGVHVVTVNEYLAKR
DSEWMSKVFGALGMTTGVIYSNQPEAEKMAAYQCDVTYATNNELGFDYLRDNMKPSLDQVFQKQHNFAIV
DEVDSILIDEARTPLIISGPAEDRSELYETIDKLIPTLDEGHYEIDEKTRGVTFTDEGNEFLEESLLKAG
LLEEGASLYDPESTTIVHHVNQALRAHKLFQRDKDYIVRDGNVVLIDEFTGRMMPGRRLSEGLHQAIEAK
EGTDIQPENTTLASVTFQNYFRLYDKLSGMTGTAMTEAEEFAEIYGLGVVEVPTNRPIARIDEDDKVYRT
ANEKYAAMIAETKLAHEKGQPVLLGTTSIEKSELLSQLLQQEGIEHNVLNARHHEQEAKIVAEAGRLGAV
TIATNMAGRGTDIQLGGNIDLKVMEALEANPDADPAVLRAEEEAKHAEEKQKVLEAGGLYVMASERHESR
RIDNQLRGRSGRQGDPGRTSFYLSLEDDLMRIFGSERLDKLLSGLGMKEGEAIIHPWVNKSLERAQAKVE
GRNFDMRKNVLKFDDVMNDQRKVVFAQRREIMASDDTHEIVTDMRHEVIDDLIDIYMPPKTYADQWDTQG
LQDDVREKLNIDAPVVEWAAEEGVDDEQIRERLVEASDKLMAEKVEAFGQEGMSNIEKQVLLQTIDAKWR
EHLLTLEHLRSVVGFRGYAQRDPLNEYKNESFQLFESMLDSLRETVTQQLSRVRPLSEEEQREMMMQMAA
RQGMQRAAAPAAEPVEAPKEGFVEDDPSTWGNPSRNDKCPCGSGKKFKHCHGRLG
>gi|99082758|ref|YP_614912.1| hypothetical protein TM1040_2918 [Ruegeria sp. TM1040]
MGIRVTGLIAVATVICALGTGVYMQRTADLQRAPSAQQASAPLPTEPETGKLVLQDVTFTSARPDTHRRR
QPLRDVDTSLLQCASTLNLTAIDNAMLQVELSAPCRAGERFTLHHGGVMVTYALDAEGDFRGVLPAFTKR
AVVIADFASGRDLDASVMVEDLEQVERVVMHWQGRSGLELHALEFGATYGSAGHVWKGSEPGLGAGEVLF
LGDPDQVAAHLVQVYTLPKSSGYGAVNISVEAEITDANCDQAVAAQLIERRDDRLRTRDLVLNIPDCSAV
GDFLVLNNLVESLKIASN
>gi|99082759|ref|YP_614913.1| OmpA/MotB [Ruegeria sp. TM1040]
MSYYRAAVCAALCFFSFGQPVLGQDVTLSSPDGAIEVSGDLLGFDGEFYRVETQFGELTVDGSGVRCEGP
GCPSLSDFVAEITFAGSSTMAEVLLPALIEGFSLRNGYQTARMQLDSRQFEYTLSRDGRVAGRFTFQVSN
TDEGFADVLANQADIVMALREIREAEHLLASEAGLGDMSLSNRGRVLALDAMVPVVAPSNPVRRISLPQL
ADIYAGKITNWSELGGADAPISVHLPVAGAGLAQAVEDKLLSPAGLELSESIRRHDRGSTLVRTVATDPF
AIGIASYAETGQTRMLTLTGACGFSLSAGRRSIKTEDYPLTAPMFLYLPAHRLPRIARDFLTYVRGPAAQ
IVIRRAGFVDQAPEHIPLRLQGERLSNAIRSAGEDIPLSELQRLISGLDGLQRLTTSFRFEAGSSRPDAQ
SRNNIDLLARELEAGVYDGKRLVFVGFSDGEGPAEGNRAIAMKRAESVRRAVERAAETANLDRISIETAA
YGEALPIACDDSAWGRQANRRVEVWIR
>gi|99082760|ref|YP_614914.1| 1-deoxy-D-xylulose-5-phosphate synthase [Ruegeria sp. TM1040]
MTDRPQTPLLDQIASPADLKRLSDAQLEQVAHELRQETISAVSVTGGHLGAGLGVVELTVALHSVFDTPK
DKVIWDVSHQCYPHKILTGRRDRIRTLRMKDGLSGFTKRSESAFDPFGAAHSSTSISAALGFSVARDLGG
VTEEGLGDAIAVIGDGAMSAGMAFEAMNNAGHLGKRLIVILNDNEMSIAPPVGALSSYLSRLYTEAPFHD
LKAAAKGAVSLLPEPFREGAKRAKDMLKGMAMGGTLFESLGFSYIGPIDGHDMDQLLPVLRTVKARAAGP
ILIHAVTKKGKGYRPAEVARDKGHATAKFDMVTGEQKKAPSNAPSYTSVFGKTLTDLAAQDSKICAVTAA
MPDGTGLNLMAERYPSRTFDVGIAEQHGVTFAAALAAGGMKPFCAMYSTFLQRGYDQVVHDVAIQRLPVR
FAIDRAGLVGADGATHAGSFDIAFMANLPGMVVMAAADEAELKHMVATAAAYDAGPIAFRYPRGEGEGVE
MPEQPEVLEIGKGRIIEEGSRVALLSFGTRLGEVRKAAEALAARGITPTVADARFAKPLDRDMILSLAEK
HEALITIEEGAVGGFGSHVAQLLSEEAVFDTGLKFRSMVLPDTFIDQASPKDMYDSAAMNAEHIEAKVLD
VLGVARLDERRLPAS
>gi|99082761|ref|YP_614915.1| farnesyl-diphosphate synthase [Ruegeria sp. TM1040]
MTAGFTAALLQAQTQILNHMDRRLPQADLLHQAMDYALRGGKMLRGFLVLESARLHDVPETAAIEAALAI
ECIHAYSLVHDDLPAMDDDDLRRGQPTLHRKWDEATAVLAGDSLQTLAFELLARDSVGPNALSLIRTLAQ
AAGKDGMVSGQMMDIAAETAETPLTLDEITTLQARKTGCLIEWSACAGARLAGADPAPLRHYAQALGLAF
QIADDILDVEGDAATVGKAVRKDADAGKATFVSHLGLEGAKHRARELADLACAALAPYGAAGDTLKDAAR
FVISRDS
>gi|99082762|ref|YP_614916.1| exodeoxyribonuclease VII small subunit [Ruegeria sp. TM1040]
MTTETPVEEMSFETAMQELERVVDQLERGDVALDASISLYERGAALKKRCEDELKRAEEKVAAITLDANG
QPTGTQPLDAG
>gi|99082763|ref|YP_614917.1| histone deacetylase superfamily protein [Ruegeria sp. TM1040]
MATALLTHADCLTHETPPGHPEQVARLEHVLHALAGLDLVRVTAPLAAEDDILRAHPATYLADLRRALPT
EGRRALDADTWMSAGSLDAAFRAVGAAVRAVDMVLAGDVQNAFCATRPPGHHAETDTPMGFCLFGTAALA
AKHALDHHGLKRVAVVDFDVHHGNGTQDLLWDERRALVISSHQMPLWPGSGNSDDDGAYDNVMNLPLRPE
TGGDEMRQIYQTQAFARLRAFKPELIILSAGFDAHREDPLAQLNWKTDDFRWLTSELCLLAQELCQGRIV
STLEGGYDLNALADAAKAHVEELIKAAT
>gi|99082764|ref|YP_614918.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MSANNDPHLLIVDDDERIRDLLKKFLIRAGFLVTAARDAAHARRVLSGLDFDLIVLDVMMPGEDGLSLTA
ALRETMATPILLLTARGETDDRIKGLEAGADDYLPKPFEPKELLLRINAILRRMPESQPEDIAPKFLQLG
EIRYDIDRGEMWQGEDLIRLTSTEIQLMKIFSAQPGEAVSRAKLVEDLGRDRGQAQERAVDVQITRLRRK
IEPNPKQPQYLQTVRGAGYMLAPD
>gi|99082765|ref|YP_614919.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MSDGRSGTGFGGESLLFLTDEQLRQGIEAMFFAYQGFTADPDRILADLAYGRAHHRALHFINRSPGTTVN
NLLSILGVTKQSLNRVLRALVEDGLVDSRVGTLDKRERNLYLTERGVDLEQRLSDAQRVRMRAAYKQAGP
EAVQGFKKVLEAMMDADMRRAYTELREKSQ
>gi|99082766|ref|YP_614920.1| branched-chain amino acid aminotransferase [Ruegeria sp. TM1040]
MAGYDDRDGLIWMDGELVNWRDAKVHILTHAMHYASSVFEGERAYNGKIFKSRAHSERLIASAEALDMPM
PYSVDDIERAKEETLKASGLQDAYVRAVVWRGSGEDMGVASAKNPVRMAVAVWGWGAYYGDAKMQGAKLD
IAEFKRPSPETIPVHAKAAGLYMICTISKHKAEAKGCSDALFMDYRGYVAEATGANIFFVKDGEVHTPKP
DCFLNGITRQTVIQMLKDKGITVHERHIMPEEMDGFEQCWLTGTAAEVTPVGEIGPYKFEVGQLTREIAE
EYEALVRS
>gi|99082767|ref|YP_614921.1| OsmC-like protein [Ruegeria sp. TM1040]
MSVSPVYTAHGSATGGRDGQAKVKGTDLVLDLAPPTEMGGDGKGYNPEQLFAAGYSACYIGAMKFATTQD
DSLPKVPDSVEVETAVGIGPRDEGGFGLKVHLKVTLPGVEKEAAERLTEAGHKICPYSNSVRGNVEVTTE
IA
>gi|99082768|ref|YP_614922.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MDQPLKIDELLCFSVYSVNHAISRLYRPLLAPLGLTYPQYLVLVALWDKDQRRVGDLGSELQLETNTLTP
LLKRMEMAGFLTRQRDSSDERGLIVALTDKGREVKEQAGTLTACVLEAMGGDIGELAALRDRLHSLRKTL
EQE
>gi|99082769|ref|YP_614923.1| hypothetical protein TM1040_2929 [Ruegeria sp. TM1040]
MAKSLTSHRPILAITLKVTAIGLFTIMSGLIKEITQTVPTGQAVFFRSFFVLPVILVWLAARGDLPSGLR
TRSPMLHFWRGVVGTTAMGLNFAALAILPLPEVTALGYATPIFTLVLAALLLGERIRIIRISAVAIGLVG
VLIMLSPRLGGAGSFQDMAFIGAMLVLAAAALRGFVQIHIRKMVQSEETAAIVFYFSVTASLLSLLTLPF
GWVKPDMPLLLLMISTGFIGAIAQILITSSYRFAPASLLAPYDYVSMLFALLIGYVWFSEWPSLVMLLGA
ALVIVANGIVIWRESRLGLERGKAKPLTDPKGG
>gi|99082770|ref|YP_614924.1| cation efflux protein [Ruegeria sp. TM1040]
MAGCCNHTARFDGVSKEYKRRLWAVIVINAAMFCVEMAAGQAAGSQALKADALDFLGDALTYGISLAVIG
ASLRTRALAAIGKGVSLLLMGGWVFGSTIWNVFVVGVPEAQVMGVIGFLALAANLLSVALLAAYKDGDAN
VRSVWLCSRNDAVGNVAVMIAALGVWGTSTGWPDLIVAGIMAGLFLNSALQILRQALAEWRSEENQAEAH
DPGPAH
>gi|99082771|ref|YP_614925.1| MerR family transcriptional regulator [Ruegeria sp. TM1040]
MLSIGALSKATGVKVPTIRYYEEIGLIDHASRNAGNQRRYDQAGLERLGFIKHARDLGFTLEEIRDLMGL
NGQLGQDCRAADRIAQSQLEKVRARIARLRRLEAELERITTLCQGGNGGQCQVLSALGDHSLCLGDHD
>gi|99082772|ref|YP_614926.1| NAD-dependent epimerase/dehydratase [Ruegeria sp. TM1040]
MFCHMTQDTTRKTLLCFGFGYTARALAKILPRDAWRIIGTTRDRCEDQSESGVELMTWPGQDVPLRDVTH
ILLSISPSEDGDPVLNALGAEIAALPSLEWIGYLSTTAVYGDHDGGWVDEMTPATPSSQRGNWRVRAEEE
WSSLAGLPLHIFRLAGIYGPGRGPFAKLMAGKARRIVKPGQVFSRAHVEDIAQVLKASIQAPNPGAIYNV
CDDEPAPPQDVLGYAAELLGLPIPSEVPFDEAGMSPMARSFYGENKRVRNARIKDELGVKLRYPDYRSGL
QAVFSAEDMEKFVPPADPPGV
>gi|99082773|ref|YP_614927.1| hypothetical protein TM1040_2933 [Ruegeria sp. TM1040]
MHVYLYLISANYVSTKRFAALSRRLEELAPKPAMAIRLEADGVGLWQALDTLRARGARRIDLRPVGLPFS
QSLENWLPGAAGAWCAQQNGVPPEVFFASSPEHDDDVIRAVASAEVSLQRVVDRPRGEIGKGWDLPPPHQ
HHLLVCTGPRCHLKDAPNLADHLKSEIRRAGLGDSCLVTTTGCVFPCNAGPVIVHYPRGDWYRVPDLSEI
QRFVKTVLVQGGRLEHLIFHQTGVSHETA
>gi|99082774|ref|YP_614928.1| periplasmic binding protein [Ruegeria sp. TM1040]
MKLRNLLPLLGLMASAAHADAVTIQSCGVSQVFDKTPSRAITLNQQATEVMLALGLQEAMVGTAYIDDAI
PAQWNDAYESVPVLAEKYPAAEVVLAQEPDFLFAGFGSAFSEDNLGAAEKWHDLGIGTYLVDASCKDKHL
QDVPLTVAPIFEDIETVGKIFNVEDRANALIDTLQQRLDSVKAAPSGAGQTAFIYDSGAETPFSIGCCGG
PALLASLTGLQSISSDVPGTWVDLSWEHVVAADPDVILLIEADWSTAAEKRAHMEADPVLSALRAVKEGR
FVTVPFSETLLGMRFADGVETVNNQLAKLP
>gi|99082775|ref|YP_614929.1| transport system permease protein [Ruegeria sp. TM1040]
MRRGSPLLLPASGLALLLAMAAGVLWGTADISWGDRLAILMHDDDAPRGLSMIVWQWRIPRVLAVGMIGA
GLTLAGLLMQTALRNPMADPYLMGVSSGASAAAVGAIIWFPSQMTETLGVPLIAFLGAAAAFLMTLTLSH
RRGRALDPLVVILAGVAVSLMFQALTAFFLYVGDPHATRNAMGWLMGTAAGTDWEELPLLGTILALSLVL
ALRASSKLDATLLGDERAQSLGVNVGRMRLLVFFVTIALTGVAVSIAGIVGFVGLILPHMARLLVGARHR
VLIPQAAILGAITLILVDLACRVVLAPEELPLGVLLALLAAPPFIYILRGMAHAR
>gi|99082776|ref|YP_614930.1| ABC transporter related [Ruegeria sp. TM1040]
MPDDPILEIQDLSVAVGGLPYVRDLSLCVERGRFHGLLGPNGAGKTTLLRVLYRAIAPQSGEVRLNGRPQ
SDFSPAQWARHVGALVQGGGLLSGLTPEDIVEIGLTLRERPSAKRKEAVQDALSLVGLQDKARQDAESLS
GGELQRCYFAQLLACDPEVYVLDEPTNHLDLHYQLRLLDEVRRRGRSAIVSFHDLGMAARYCDTVHLMQE
GQLVAEGPPQAVLTPEVLHQHYRVDGRLDGHSLKLEGPVLDGTDPLRVFEDERSQATLWSSSASSKA
>gi|99082777|ref|YP_614931.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MTYSIRTAILSIVGLAAIGMCALVGLSFYTNAARDTSQQEIEQVETLNATIVQLEIAFLQARRAEKDFLL
RSDEKYVGRHADILTQLNATLDSARAQTNEIDGMSDVSANLDDLQVAVASYAASFQDVVSSSLALGLNET
EGHQGKLRAAVHSVEESLKDSAYPEMMVKMLMMRRHEKDFIMRRNTKYLGRLEQRIEEFHAFPDSYFSSA
EQQAEIDALLETYRSTFAAFVDETMKLTERTGIMSDRYAAAEPILDETRTLIRDRRDMIVTSAKAAQREL
MNRSSILAGIGLLTFIALGFALAQKISGPLLKIQRVLQQMFEGKFDAEIPHSRINEVSAVSTAIENFRDG
QIERERFATEINKVISACAEGDFSQRIPIDDEESEFAQLGHGVNSIGTVVESGLADVRFTVDALAGGDLT
VRMPDSHRGVFAEIAAAVDALSLTQTEVIRQLIESSVTLNNTANEIAAATLDASKRGESAAASLEETTGA
IQILNDSVQDTASNSRQAHEYVRDAQNRVASTLAVAEETTAAINRVREASEAISKITDLIEGVSFQTNLL
ALNAGVEAARAGEAGAGFAVVASEVRALAQRSAEATQEINELIRNSSNEVRQGVELVSRTGGELNAIKDS
VASLVQMVDQISVANSEQSTSITEVNTAVTQLDESSQKNAAMLEETAASTQMLRDEAAKLVASVSRFKIE
ATDTPQSANLDQAFDDADDDHKVA
>gi|99082778|ref|YP_614932.1| OmpA/MotB [Ruegeria sp. TM1040]
MTAQSNQAPIIIKKVKKGGGDGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADYFSPSIPL
SRVSGGGNGAFQGDTMFTEDVKPQNGVGATKENPTDASRAQGETGVADDQQSDAAEEASFRQIEEALMGR
GGESMVSIDMARHIVTRVTDEGLIIELFETEDATLFEADSERPTVLMRDLLRMVARVTSGVENNVAIGGH
VASTPVVIANNPVWALSHARADQTRELLQAGGMSAKRISRVTGFADRDLASQNPMSERNNRITITLLRK
>gi|99082779|ref|YP_614933.1| hypothetical protein TM1040_2939 [Ruegeria sp. TM1040]
MTISSSLNAGVAGLAANSTRLAAISDNIANSSTAGYKRVVTSFESMVISQSGGRYAAGGVSVNNTRMIDE
RSSLISTSNATDLAVAGRGFLPVASLAEVKAGEDPNMLLTTSGSFRTNDEGYLTTSSGLVLLGWPANSDG
TLPSVARDTDDPLEPIRFDTAQLSAAPTTAVSLGVNLPASSAVTGAAGAAEENTIQYFDNLGGQQDLNIV
YTPTGAADNEWTMTLTDGVTGTVVGDYTLTFDDSVTGKGTLSTVTTTTGGAYDPATGAIIVTTDSGPIEI
EIGVMTQLASSFSAATIEKDGYEAASFAGVEVDEGGYVHALYENGSSRIVYQIPLADMPNANGMRSLDSQ
TFMPSPDSGAYYLWDAGAGPTGTVASYRQEESGTDVASELTTMIQTQRAYSSNAKVIQTVDEMLQETTNI
KR
>gi|99082780|ref|YP_614934.1| flagellar hook-associated protein FlgK [Ruegeria sp. TM1040]
MSLSTALSSAMTGITAASRSTSVISDNLANALSEGYYRRTLDLSSNGAAGGVRIGSVQRMIDPAIQKSVR
SAEANYAATSVTAGFYARVSEQVGTVNDAYSIAQRMTDMETALIEATSLPDSDARLNDLSMQAGELAMSI
RDAAEGVSSLRNKAEDSIAALVQGLETNLETLNDLNRKILAAEVRGQDPSGLEDQRDSLIDAINEVIPVQ
VHKRDNNQTALYTNSGIKLIDGGSVAEFSFDETRLVTPYMTLGNGQLSGLEIDGKQIDTSINGKIGGGSL
AAQFHVRDVASVQAQEDLDTMAADLIQRFQDPAVDPTLGATDPGIFTDQGAFFDPVNTLGVANRIELNSI
ISMSGSAETWRLRDGLNATAIGERGDTTILNNYAEAMEATNTITSPGLGSGDYSAYAIAANLMTNFTQEN
TWAEQELAYSSAIFSDIQSRELEQGVDTDSELQTLMMVETIYAANARMIQAIDEMMQELMRL
>gi|99082781|ref|YP_614935.1| flagellar hook-associated protein FlgL family protein [Ruegeria sp. TM1040]
MHVQSFGDMAQYLFLRRRSVELNSTLDTLTQEMSTGIASNLPERLGGDLGFVVDLERSISKMDSYKVAAQ
EAGLFASTAQSYLERINESALKLGSDILALSSTSNDTTSQEMAAQSENFLTETISNLNGKFSGRSLFAGT
DTSVTPLESPNTMMTALVAEVGALTDVDDIFQAVEDWFNDPAGFDAIMYNGSTSSMSAVRIGANEEVNFA
LRADDERLKQAMQSFALGALASEDYLSHLSTVEASALVKRAGTELMNAQAELTDVQSDLGFVEARIEETQ
VRNTAALTTMGTTLNDLILADPAETASRVEEVQFQLEALYSITVRSSQLNLLNYM
>gi|99082782|ref|YP_614936.1| flagellar basal body P-ring protein [Ruegeria sp. TM1040]
MRKFLHILITCLVLPTLAQANAIRLKDLVEFDGVRGNDLVGYGLVVGLDGTGDGLRNSPFTEEIMTNILE
RLGVNVSGEQFRPKNVAAVFVTATLPPFARVGGTIDATVSAIGDSSSLLGGTLIMTPLNAADGQIYAVAQ
GTILAGGAVAEGDAATVTQGVPTSGVIPSGARVEREIEFDLSSLNSMRLALREPDFTTAGRIERAINNEF
GRNVAVMRDSGTVEVNIQRTNARSTAHAVGRMENVLVEPQRKARVVVDQRSGTIVMGSDVRISNVAVAQG
NLTLRVEEAPLVSQPNPFADGETVVVPRTGAAIEEEDGIQLAEVPETTSLSEVVSGLNALGVSPRDMIDI
LKSLKAAGALHAEFVVR
>gi|99082783|ref|YP_614937.1| hypothetical protein TM1040_2943 [Ruegeria sp. TM1040]
MISSPRPAYAARGFFIPCAPLSALVETAQQERKNADRTPKADGETACLLEQAFEDGLSRTKASDGSHSGM
SQDIRWLGQDQDRPSNRAHLPPHGVAPSSATLNSHP
>gi|99082784|ref|YP_614938.1| flagellar biosynthesis protein FliP [Ruegeria sp. TM1040]
MTRKFLALGVLAVFALLAQPQVALAQELSLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPFLIT
VLSILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWETGIAPLIDEELEVVPALERAVEPFRVFMA
NRLDPDTYYAIADLRPGTEGSDPSPESPLSVLIPSFMLSEITRAFEIGFLVFLPFLVIDLVTAAILMSMG
MMMVPPALVSLPFKLAFFVVADGWSLIASALVRSYYPS
>gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp. TM1040]
MDETGELNPKAAEASNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVARG
QLEEMEGDQAGQLAVRLTEIADLQSGLG
>gi|99082786|ref|YP_614940.1| ABC transporter, ATP-binding protein, flagellar, putative [Ruegeria sp. TM1040]
MTIAHLLEDFGVKTPVEPVSSFSEELVEEAKLVSFEKGYTAGWDDAVEAKDKEATHVSATLATSLEDLSF
TYHEAQSQLMESLDPMFKVLTSVILPDTMAATFGHHVIDHLNEMAKGQINEPMEIVAAAGEGNAIRALLG
ENPAFNVRVREDASFSAGQAQLRVGQSERELNSEALIESIRDSIDAFSYQFKEESQYG
>gi|99082787|ref|YP_614941.1| flagellar MS-ring protein [Ruegeria sp. TM1040]
MQAGENAGATEVNVQQIKNVWAGLDKRKRMMAIGATLAVIFTFFLMSLVANKPSMQLLYAGLESSSAGDV
VSALEQSGVDYEVRGGSIYVPSSKRDELRMTLASQGLPANGGKGYELLDSLSGFGTTSQMFDAAYWRAKE
GELARTIVANPHVSQARVHIANTGSNPFQRTIEPTASVSVTPMGSPITPSQANAIRFLVASAVAGLAVDN
VAVIDANGALIGSPEAAAAAGAGTDDRSQTLRERVLRLVEARVGQGNAVVEISVETITDTESIREKRVDP
QSRVAISTDVEERIDSSQNQAGEVTVASNIPDGDAGNGEGSKASTNATRERVNYEISETEKEIVRGPGAI
KRLTVAVLINGVTTETAEGEAAFEPRPEEELEALRELISAAVGFDAERGDVITLKSMDLPNVEPLGTEVT
SSVFDNLYFDVMSIIQMAALAIVALILGLFVVRPILAGNGASVQALPSPDGVAAGGLPELPDMSGGDAGF
MTNPDLGANIALDGEIDGGDGGFQPLGDLPGMGDGLAGFGGGGGGMSDDPVDRLRSMIGERQEETVQILR
GWLEENNEERA
>gi|99082788|ref|YP_614942.1| flagellar basal body-associated protein FliL [Ruegeria sp. TM1040]
MTDAVADVETDQPAKKSKMPLIIGLVLGIAGAGGGFYAVQSGLLPFGNTPAPEMAQATKEAPEGVDKGES
AEEIANLAFIEMEPIVVTLNRASGVQQLRFRAQLEVNQADQDEVETVLPRVVDVLNSYLRALELEDLTDP
MALPKLRAQMLRRINIVTGQGRVRDLLIMDFVLN
>gi|99082789|ref|YP_614943.1| hypothetical protein TM1040_2949 [Ruegeria sp. TM1040]
MELIADILLAAGALGAGFYCLVLSRRLKRFNDLEKGVGGAVAVLSSQVDDLNKSLVAARKMSDGSSQALE
QLTGRAESVAHKLELMMASMHDIAPQQDAKAKPAATEETDALAEAYQAEAQAEAAEQADAQEEAKPAGLM
FVRHSRSQNRVA
>gi|99082790|ref|YP_614944.1| hypothetical protein TM1040_2950 [Ruegeria sp. TM1040]
MAKANKSQKMEKARRGTLMLLAVFLMGSAVVRIALEAAPAIAREVADIKSDEAPVEKPVAATGLASVPDS
AEMQAMLAAFQKREEKLAAREAEVEDRMRALEIADQAIDKKLQDLEEAEQKLLATLALADGAAEQDVTTL
TTVYEQMKPKDASALFEEMDPTFAAGFLARMKPEAAAGIMAGLSPEAAYTISVVLAGRNGEVPKE
>gi|99082791|ref|YP_614945.1| flagellar motor protein MotA [Ruegeria sp. TM1040]
MIGIVGIIVIFAMVFGGYLLAGGKLGIILKSLPFEMMMIGGAAVGAFLISNDMGGVKHTLKDMGKVFKGP
KWKPDDYKDLLCLLFALIRIARANPVEVEQHIEDPENSAVFGKYPKILADKEAINLISDTMRSASMNYDD
PHQVEEVLEKRIEANLHHALHSSHALQTMADGLPALGIVAAVLGVIKTMASIDQPPEVLGKMIGGALVGT
FLGVFLSYGLVAPFAGKVKSVVEEDAHFYQLIREVLVANLHNHAAAICIEVGRQNTPSHIRPGFSELEEA
LNEVKQGAA
>gi|99082792|ref|YP_614946.1| hypothetical protein TM1040_2952 [Ruegeria sp. TM1040]
MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVGSPTAVFNTQS
VFDLIPRTRIRSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGRSLTLAEPSDRASLPLTFPSA
RAGRDFNIDSRDLASARVAMGLEDAVEQTFGSAKRQPLHTGPVEIPLLGDETGIAPAQKAEDVAVPDTKD
DDDKPSPETLTADSSLLMDLEENRRAALVNDTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRP
LNPLDNMSVTSAIDRETGLFAVSNGRDEAASHCIPDLEIAVYKWGKETPFAEQIGALRNEILGEFDQLNR
DATLKLARTYLYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEELPVNTIFSGQQTCSGGAAFW
AAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTGVEGVPDRNLA
EAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPDVPDLTASYELEYRDAALGAE
LRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTPLMTLLTENADDVTFLKYALIFAHEAGATRA
GQVGDIIARRLLDLGFAEQAEMILRKMSLEPQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRA
EALWRNKEYERASEYMMSAQDLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPP
LAEARALVESSVGARSSIEELLRKVERTPDEVED
>gi|99082793|ref|YP_614947.1| flagellar biosynthesis protein FlhA [Ruegeria sp. TM1040]
MPNLSVKELFSPTILLAMALMAIIVMMILPMPAWVLDVGLATSFALAILIFTITLFIERPLDFSSFPTIL
LGSLMLRLSLNVSSTKLIIGQGHTGTDAAGNVIEGFANFVMGGSVFLGLVVFGVLLIVNFMVITKGAARM
AEVGARFALDGMPGKQLAIDSDMSAGAIDHATAKERRETEQRETTFFGSLDGASKFVKGDAIAGLLITLL
NLIMGLIMGILIHGMPVATAFETYAILTVGDGLVSQIPSVIISIAAALLLARGGASGSTDTAIFSQFSKY
PGAIGAVAVLMVLFALVPGLPFVPFIAGGGALGYLAYRVKTNNDAAAQEEIDAKVEEVQSPEKTKALGDI
LDLDDLHLEFSQDLVSMVLDPGTGLDARIANMRTHVATTFGLILPEIRLTDEAELENGTYVVRIQGVEQA
RGTLHPDMVLALMPDNHAALPSGTDVTEPVYGAPARWIATKHQEDAALMGATVVSPPEILATHLLEVVKQ
SFPRLLTLKALRRLLREMTELSDEFRANANKKLLDELIPDKVPIDTLHAVLRLLLEERVSIRNMPLILES
IAEARMRTTSPELITEHVRQRLGFQLVAEMKREDGTIPLVQLAPEWEDAFTTYQVETQSGLDIALPPDTF
NKLVDAMSEKINQVTEQGIFAAIVTSTRRRRYLRTILRSRGIQNPVLSFEEIGLEARPALVGMVAA
>gi|99082794|ref|YP_614948.1| flagellar biosynthetic protein FliR [Ruegeria sp. TM1040]
MNFVGITPELMALFGAGFWHAAIVFLRIGAMTSIMLGFGEQLIPTQIRLVAGLVFTAIVAPALPQMPMPQ
TVMQYAGLMATEVVVGLALGLGLRMFMHMLQTAGSIAAQCTSLSQVLGGAGADPMPALGAVLWISGIAVA
VMLDFHIHAAQLMIRSYDLFPVGIFPSASGLSEWGVHRVSATFAQAFTLAAPFLITAVVYNLTLGVINRA
MTQLMVVFVGAPVITFGGLAILMIGAPMMLEVWGHGLLMFFADPGVGMP
>gi|99082795|ref|YP_614949.1| flagellar biosynthesis protein FlhB [Ruegeria sp. TM1040]
MSDENDDSDKSFEPTPEKLRKARQEGDVPKSNDLLQAASYLGLLIAFYTAGRSSIEQLGTVLMSMIDQPD
RLAPVFFGDGIAAPVAWEFISDALTSVIAWFAVPAALVILAVFAQKAMVFAPKRIQPKLSRLSIIKNAKN
KFGRSGLFEFAKSFFKLLLYSITLGVYLSWRLPEMIASVGTSPFTVVPFLVQLAMEFLILTLIIALAIGL
VDAPFQQAEFIRKNMMSRKDVMDEMKNSEGDPHTKGQRKQKGRQIVSKQIAAAVPEADVVIVNPTHYAVA
LKWSRVSGSAPECVAKGVDGVAAMIREIAQENGVPLHSDPPTARALYATVEVGEEIAEEHYAPVAAAIRF
AEEMRKKAKESIL
>gi|99082796|ref|YP_614950.1| hypothetical protein TM1040_2956 [Ruegeria sp. TM1040]
MLAQMQAVTNAVYLREHAKIKPILDREAQLRGNLAMLKQQVEESRALVEQSHEIKALGVDLHWQKWHTNA
RRDINQDLAQVTAQKFRAMDKLRQAFGRKHAVETMEQQFKSDAKERRNKMLFDRLMDLD
>gi|99082797|ref|YP_614951.1| hypothetical protein TM1040_2957 [Ruegeria sp. TM1040]
MAKLLPILMLILGIGGGIGAGIMLAPAPEMTEVAAKGDEHDMATDEAGEDHSEAEEEEDPTEQNEFIKIK
NQFVIPVVERDQMTAMVVLSLSLETKPGLSGKVHTYEPKLRDVFLRVLFDHANMGGFRGAFTRSEILDPL
RTSLREEARRFLGKDVVDVLILDITRQDV
>gi|99082798|ref|YP_614952.1| flagellar basal body L-ring protein [Ruegeria sp. TM1040]
MKPLLAVKCAVLGLSLVGGCARMDHLGKPPSFTPANETQEHVAMLYQGLPVSSQTPRAVDNASLWSGSRG
SLLGDRRATKKGDILTVVIEINEKASISNDTQRSRNSSESLQVPQLLGLPQRLDERLPEGASSADLVDLG
STSSSGGSGSVSRSEKLELRVAATVVDVLPNGVLAISGSQELRVNFELRELLVSGYVRPDDISRQNEVTY
DKIASARVSYGGRGQITDVQQPRYGQQVLDAVLPF
>gi|99082799|ref|YP_614953.1| flagellar basal body P-ring biosynthesis protein FlgA [Ruegeria sp. TM1040]
MKLLPFLIGILFAQSALADILVPVRTIRAKEVITADDLVFKNVESPGALSSPNEIIGQEARIALYASRPI
HAGDIGPPALVDRNDLVKLIFRHGGLEITTEGRSLGRGAKGELIRVMNLSSRTTVTGRIRADGNIEVN
>gi|99082800|ref|YP_614954.1| flagellar basal body rod protein FlgG [Ruegeria sp. TM1040]
MRALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGTVLPTGVQVGL
GVRPAAVSVYLNQGALSQTGNELDLAIDGNGYFEVTLPSGETAYTRDGSFKRSAEGLIVTNDGYPVSPEI
TVPEDAKSISINGEGEVYAYFNDTIEAELLGQFTLSGFTNPKGLEAMGGNLFKQTEASGQPNTTEPGADG
IGFLRQKYLEDSSVDAVREITELIEAQRGYEMNSKVISAVDQMMSATTQVR
>gi|99082801|ref|YP_614955.1| flagellar basal body rod protein FlgF [Ruegeria sp. TM1040]
MGSIGYTTLSRQSGLLNEMQAVANNIANSATTGYRSEGLIFSEYVKSAPGQESLSMGRANIRNTSLEQGT
MNQTNGTFDLAIEGEGFFMVETPAGNRLTRAGNFTPNAEGDLVTADGYRVLDAGQAPMFVPGGAESISFG
ADGTLSADGQQLGQIGLFVPDEDAQILREDGVMFRVEGETLPAAGAQVLQGFLEGSNVNTIHQLARMIEV
QRAYEMGQSFLDHEDKRIRSAIDNLMKS
>gi|99082802|ref|YP_614956.1| export protein FliQ [Ruegeria sp. TM1040]
MLTEGIFYDTLRQGILAAITMSLPILIAALVIGLTVGLFQALTSIQEMSLTFVPKLAGILVVFWLTMATM
TQTLVAFFTGHVIPLIQGTGGL
>gi|99082803|ref|YP_614957.1| flagellar hook-basal body protein FliE [Ruegeria sp. TM1040]
MDIRSLTATSGYAAARPATKVDPDYNPTSLQEQAKTSFQDFTNTLAHSEQVSVQAMTGGADPHQLVQALA
QTELAVETAVTVRNKVVEAYQEILRMPV
>gi|99082804|ref|YP_614958.1| flagellar basal body rod protein FlgC [Ruegeria sp. TM1040]
MSDFSKSLSVTASGLRAQAARLTHVSENISNADTPGYRRKTVSFQSVRDLETDVSQVRVGRVSLDRTELE
QVYDPSHPLADETGHYEGSNVDLMIEIADAREAQRTYEANLKMFDQTRQMSSSLMDLLRR
>gi|99082805|ref|YP_614959.1| flagellar basal body rod protein FlgB [Ruegeria sp. TM1040]
MFERLNVFNIAYSMATHAGKRQALVSENIANADTPGYHAKDIKPFREVFAASEAQGDMIASRGSHINGVN
GSGFDWAVTTDESSVDPNNNSVSLEEQILNGIEAKRQHDRALAIYRSSMNILRASLGRS
>gi|99082806|ref|YP_614960.1| ATP synthase FliI/YscN [Ruegeria sp. TM1040]
MMKSIQALSQELANTRLAAPMGRVTGISGGEIEVSGLESQARIGDRLTLRRGKKDDLHGEVLAIGSDHIR
MLPDTAPERASIGDAVLLFQTPEFAPDDSWVGRVIDPFGEPLDGKPMLRGVESRDLMESPPKAAARRGLG
KRLSTGLAILNTVLPIVTGQRIGLFAGSGVGKSTLMAQLAQNMEADVVVMALIGERGREVNHFVKEVLGP
EGMKRAVVVAATSDQSALVRRRCAWAAMSVAEHFRDQGLNVLFMADSITRFAEAHREIAVASGEAPALRG
FPPSVTPLITGLCERAGPGLEGQGDITAVFSVLVAGSDMDEPIADILRGVLDGHIVLNREIAERGRFPAI
DVSRSVSRSLPAAATKEENEMILAVRKFLGAYEQSEVMIRAGLYSEGNDLVLDQAVKIWPELDSFFGRNE
LDGIKGSFNRLALLLRRAGGGR
>gi|99082807|ref|YP_614961.1| transposase IS3/IS911 [Ruegeria sp. TM1040]
MRKSRFSEEQIIGILKEHQSRIGAKELCRKHGISDGTFYKLRSKYGGMEVSEANRLKALEAENAKLKKML
AEHMLDVGTLKGMQGMEAGDRHAFE
>gi|99082808|ref|YP_614962.1| integrase catalytic subunit [Ruegeria sp. TM1040]
MPKNYNQRLACALAGIDPRVYRRRPSRPEETELRERLKELSGERRRLGYRRLHRLLGREGWQVNWKKIYR
IYREEGLTVRKRGGRKVAIGTRAPMSIPQGPNHRWSLDFVSDSLSDGRRFRVLCVIDDFSRECLACVVDT
SLSGQRVGRELDSTVRTRGYPCIVISDNGTELTSSAILRWQEDRKVEWHYIALGKHMQNGFVESFNGRLR
DECLNEHLFANLRHARGLISAWHTDYNHHRPYMSIDGLTPREYHQRSVKDQTLM
>gi|99082809|ref|YP_614963.1| transposase IS3/IS911 [Ruegeria sp. TM1040]
MKASKFTDAQKAFIIKQAEDGTSVAEVCRKAGISTATFFNWKKKYAGLMPSEMKRLRELEQENARLKKIV
ADLALDKEMLQDVIKRKL
>gi|99082810|ref|YP_614964.1| integrase catalytic subunit [Ruegeria sp. TM1040]
MRADWQVSIRRACEVIRFDPRTYRYKSRRPGQAALEQRIREICQTRVRFGYRRVHVLLRREGWEINAKKT
YRIYKELGMQLRSKTPKRRVKAKLRDDRKEAVSPNDVWAMDFVHDQLATGWKLRVLTVVDTFSRYVPVLD
ARFTYRGEDVVATLEQVCKRTGYPATIRVDQGSEFISKDMDLWAYANDVTLDFSRPGKPTDNAFIEAFNG
RFRAECLNAHWFMSLEDAAEKLEAWRRDYNEERPHGAIGNKVPADLMKSVHDTSP
>gi|99082811|ref|YP_614965.1| hypothetical protein TM1040_2971 [Ruegeria sp. TM1040]
MTFTPLIPSSGVAGWNFLQSTYDRQYDAFVQSGKLKNDSEYFAENIGEVTSSEDLLNDRRLLQVAVKAFG
LEEEINYRALLQRALNEGTSASDALANTMNDERYVEFSNAFGFGPGQSPMTSDSKAMQAVIDKFQSASFE
EAVGEVDETMRTALFAKRAMIEVFGEPDEDDVSQLSVRERALREFDLAMKEINGKDDDVPGVTSVEDQWE
DIIERDTLREFFDTTLRISAGAAGLEDDERIQLYRERAQIIFGTDDPTVFFSAENKDTIISAFKTRATVN
GDDAAETAKTAELSEHILDQMISRDAALNEEWDFISRQEPLAEFMKTALELPDDIATRETSEAMRIYREK
AIEAFGTDDPNVFASAANLDATLEVYRENATNAGLSSSEISSNLRTAETILKFSYNQGDAIDGGDADAAA
TAEIDAGWYSVMGQTGVPRFLNTALDVSSALAPGEIFSDLTIDEQLTIYKDKAVELFGTADLKELTGPYQ
IGAVNDAYRTNAEAAGESEFFITYYSDIAERELNTLFQSDDTDAEKAFEEALEELRTMNDEDNGPSANSQ
WFTIMGQQAMTDFMQVALGLPKEVGQMDIDQAVEVYKRKAQQVLGTDKPSEFISGDKMDELVNMYLTRSQ
MNNLSSGYSSGSAALMMLRG
>gi|99082812|ref|YP_614966.1| flagellar biosynthesis repressor FlbT [Ruegeria sp. TM1040]
MSGLVLKLAPKERVLVNGAVIENGDRRSRLSIVTPDAHILRLRDAIHPEQANTPVRRVCYAAQLVLSGDV
DPEEDRLPMLRRIEELSQVFTDPDSRAALSEATEAVISNNHYRCLKALRALLPREERLMAVRAQ
>gi|99082813|ref|YP_614967.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria sp. TM1040]
MNALLKAKSAYAAAKAPTRTARNTEYEILARITHRMIVADSKGSDGFKDLVAAVSDNRKLWTLFTSDLAK
EGNKLPTELKQRLFHLARFTREHTSKVLARKASVQPLVEINTAIMRGLRSGAS
>gi|99082814|ref|YP_614968.1| flagellin-like [Ruegeria sp. TM1040]
MSSILTNNGAMVALQTLKSVNNNLNDTQKAISTGKEIGVAKDNSAVWAISKTMESDIAGFEAIEEGLSIG
EATVAVASAGAEQIVEKLTEIKELVVSAQSENVDHAKIQDDISSKVDQVAAIISAAQFNGANLLAFDVDG
NGSTGVGVLASLDREGAGGTVTAVEITVDSVNFESSLNLSASLTSITDTTTAATALGEIEVLLQVAITGA
AALGADSARLDDQSEFVSNLVDSMTMGVSTMTDTDMEEASARLSALQTQQELAVQSLTIANEAPGTLLQL
FR
>gi|99082815|ref|YP_614969.1| hypothetical protein TM1040_2975 [Ruegeria sp. TM1040]
MSALTDQTPQAIIDALDVLLEEERGALTNGELDKLEGILARKEDLFDQLNSMTDIDHGALDSVQSKVSRN
QALLGSAMQGIKAVANRMAELRKVRKGLDVYNRSGQRTSFATTGSLKLEKRA
>gi|99082816|ref|YP_614970.1| flagellar protein FlgJ, putative [Ruegeria sp. TM1040]
MPVTHVSTPSAAAPIAQASNPKDQALRQAAIDLEASFLSEMLKAAGLGKAPEAFGGGSGEDQFAGLLVNE
QARAMAEAGGIGLAESIYNSLKDSQE
>gi|99082817|ref|YP_614971.1| hypothetical protein TM1040_2977 [Ruegeria sp. TM1040]
MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEHDDKAFDAKNN
AKATAADQHAKGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVEEALDEALPELDTSAEDFAQA
DVAEGQAVAAAGATQVSSDQSAKGSGDQVMRAGAPVTHGSATDKAVEVAIKGAASAEADAEMNSMEAART
GLLSDKDERLGTSVLLETHRDGRRQQLVPGTVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKA
TEARIRDIPLTAAQAQVAASTATARAPMNSGDTRLLHPAASGSAQALASARFQMSDTVLKSSSAVVTSLM
GANDAGRVGDDVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQLAEAVATGGKRNVDVTLNPR
ELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDAGQSGEGESSL
GGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI
>gi|99082818|ref|YP_614972.1| flagellar basal body rod modification protein [Ruegeria sp. TM1040]
MTTAVTGVGTQQTTTAGGTAGTQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQ
QVLTNETLTSMLTALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPNPAAVADKVEMIIYDDQEAEV
GRVDLPVSAEPYQWNGEDGDGNTLPEGSYSFVIESSSNGEVILSELAEVYGRVEETQNVDGEVALILESG
SAILATSVTALRDPTSSSGNS
>gi|99082819|ref|YP_614973.1| aminoglycoside phosphotransferase [Ruegeria sp. TM1040]
MSGAILSGPEQKPDQDDIETALFRHLAQQGWCLSAPTPLAGGRSNHVWRAGDKVVKLYRSDAHNPLFAND
PDRERAMLRALSGTGMAPRFLAHGLWQGQAWLMYTHVCGARWESDPSHVARILSIVHDQAKPRGLPFGCN
GSEALAQQTRQIVSAASQGTTLLDRAPQGVVPPTSQLCLIHGDPVPGNIVAHNGTLALIDWQCPQLGDPA
EDLALFLSPAMQLAYRGRVLSRQEEAEFVTAYPHPRVVARYYALKPWFHWRMAAYCAWRGETDARDLELA
EI
>gi|99082820|ref|YP_614974.1| FAD dependent oxidoreductase [Ruegeria sp. TM1040]
MMRRIFGDYAYGAGPRSNCWWDETCPPPIWPEFQGAQSVDVAIIGGGFTGLSAALHLAEAGLRVAVLEAE
TPGWGASGRNGGFCCLGGAKLGPRAMARLHGSRETQLYQASEEAAVHLVEQLIARHGISADTHSDGETVM
AHSAKARKALMMEAKTSGATFIDAPDLAERGFGGNFHGALTTPVGFALNPRKYLFGLARAAQAAGALLFQ
NSPALEVTQHGSHWHAVCPGGRLSAPQMIIATNGYSSENLPEWLAGRYMPTQSTVMVTRPITAEEQATQG
WNTAQMAYDTRHMLHYFRLMPDGRFLFGMRGGLMSSPRSEAKIRSLLRRHFERLFPAWSHIETTHSWSGM
VCLSRNLVPFVGPVPEHKGLFAGLCYHGNGVAMGSYSGALLAQLVEGRTPEMPYSKVMQRMPRFPLGRAR
RLLMPPAYGLLSLLD
>gi|99082821|ref|YP_614975.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MKRLSAFNVVSLTLGFAFLYIPMLILILFSFNESKLVTVWAGFSTKWYGELMQNEAMLQAAWVTVKVAVF
SSTIATVLGTMAAYVMIRGGRFMGRTLFSGMIYAPLVMPEVITGLSLLLLFIGIGLDRGVLTIVLAHTTF
SMCYVSVVVSSRLATFDRSLEEAALDLGCSQAQAFRLVTLPIIAPAVVSGWLLAFTLSLDDLVIASFTTG
PAATTLPIKIFSAVRLGVSPEINALSTIMIAIVTVGVISASLVSKRALVKQRREEQEAVRTT
>gi|99082822|ref|YP_614976.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MRRFFLIAVPYAWLLALFLVPFLIVLKISLSDAAIARPPYFPQFDWAEGIRAFLAELDFENFTWLLEDDL
YWKAYLSSLQIALTSTLLTLIVGYPIAYGMARAPEEWRPTLMMLVILPFWTSFLIRVYAWKGILSNEGFL
NQFLMWTGLVSEPLQILNTTTAVYIGIVYTYLPFMILPIYAALERMDDSLIEAAEDLGCSRLSAFWLVTI
PLSKGGIIAGCFLVFIPAMGEFVIPSLLGGSDTLMIGKVLWEEFFSNRDWPVASAVAVILLLILVVPIVL
FQRNQQKEQEGDT
>gi|99082823|ref|YP_614977.1| spermidine/putrescine ABC transporter ATP-binding subunit [Ruegeria sp. TM1040]
MHAPPTSPTQDDGPVPTARMGENLAIPVFEPWTDPQAKPLIQFQNVTKRFGDFTAIDDLTIDIYEREFFA
LLGPSGCGKTTMMRMLAGFETPTEGKIFLAGQDIAPVPPNQRAVNMMFQSYALFPHLSVWENIAFGLKRE
GLPRNEINARVDEMLRLTRLEKFARRKPHQISGGQRQRVALARSLAKAPKLLLLDEPLGALDKKLREETQ
FELMDIQEKTGTTFVIVTHDQEEAMTVASRVAVMDNGKVMQVATPADIYEAPNSVYVADFIGDVNLIEGK
ATATGEDSYALHWREGAAPLTVKSPNKISDGQKAHLAIRPEKVTISSEKPEAADNVVQGKVLDIAYLGNL
STYHVELPTGDVIKAQTANTRRISRRAYTWEDTVWLSWTATGGVLLGE
>gi|99082824|ref|YP_614978.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKTKTATIVSAIALSAAAAASADEVRVYNWSDYIDESLLAKFEEETGIELIYDVFDSNELLETKMLAGGS
GYDVVVPTGSFLQRQIQAGVFQKIDREKLTNYGNVWDVIQERNARFDPDNAYSINYMWGTTGLGTNLGKV
AEALGDDAPIDSLSLVFDPANMEKLSECGVHFLDAPTEMMPAALTYLGLDPNTEDKAELERAADVLEAVR
PYVQKFHSSEYINALANGDICVAFGWSGDILQARDRAAEADNGVEIAYNAPSEGALMWFDQMAIPVDAPN
PEAAHKFLDFMLDAQNMATASNYVYYANGNKASQEFLEDDVINDPAIYPTPEAMENTYIKAPYSQKAQRV
VTRLWTRVKSGT
>gi|99082825|ref|YP_614979.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MFSSAFCWCKLPKNEKDPSPVNVPNTPSVTPAEGGQKLPAHELVYQRLRAQILFGELAPGQAVTIQGLVE
ALDSGMTPVREAIRRLISDGALVFQGNRRVSVPELRAEDVDELIYARKTMECELARRAATRIPSASVDAL
EALDLRLDTAIANGDVAGYLGLNYEFHSMLNEYADAPILADLADRLWLRFGPSLRVVCGRFGTQSFPDRH
KDILEGLRKKDADLVSLAMERDVLQGMEQVRAGLTPIN
>gi|99082826|ref|YP_614980.1| putative aminotransferase [Ruegeria sp. TM1040]
MTTITNHLPTAELQALDAAHHMHPFTANGGLAQKGARIITRAKGVTLTDSEGHEILDAMAGLWCVNIGYG
RDELAEVAARQMRELPYYNTFFQTTHVPVIALAAKIAELAPDNLNNVFFAGSGSEANDTNIRMVRHYWAM
KGKPTKSVIISRKNAYHGSSVGSGSLGGMSAMHAQGGLPIPDIHHINQPNWWAEGGNTDPEDFGLQRAQE
LEKAILELGEDRVAAFIAEPVQGAGGVIVPPASYWPEIQRICDKYEILLIADEVICGFGRTGNWFGSETM
GIRPDIMTIAKGLSSGYAPIGGSIVSDEVAAVIAQDEFNHGYTYSGHPVAAAVALENLRILEEENVLDHV
RNVAAPYLKEKWEALTAHPLVGEAKIVGMMGSIALTPNKATRAAFEAEAGTVGFICRERCFANNLVMRHV
GDRMIISPPLVITPEEIDTLIARATKSLDECYTELQAQGLLKSAA
>gi|99082827|ref|YP_614981.1| spermidine/putrescine ABC transporter ATP-binding subunit [Ruegeria sp. TM1040]
MADASNTDAFVEFERVQKSYDGETLVVKDLNLTMPKGEFLTMLGPSGSGKTTCLMMLAGFETATHGDIRL
GGVSINNIPPHKRGIGMVFQNYALFPHMTIAENLSFPLEVRNMGKSEREAKVKRALDMVEMGDFGGRRPA
QLSGGQQQRVALARALVFEPELVLMDEPLGALDKQLREKMQFEITHLAHQLGITTVYVTHDQTEALTMSD
RVAVFNDGRIQQLAPPDQLYEEPANSFVAQFIGENNTLEGVIKEIRDGSALVQLDGGELIDAMPINVSEV
GQRTRVSIRPERVEYNKERLQEGAHTLKAEVLEFIYMGDIFRTRLRVAGNDEFVIKTRNAPDQVRLQPGQ
QIEIGWLPEDCRALDA
>gi|99082828|ref|YP_614982.1| polyamine ABC trasnporter, periplasmic polyamine-binding protein [Ruegeria sp. TM1040]
MKLRTLSALAATTALCAPMAMATEMANEMTLVSWGGAYQESQLKAYVEPYLEMNPDVTVVWDESSAEATA
KMRAMAEAGNITWDLVDVVASDAMRLCDEGLALELDHDEVLAAAPDGTSASDDFGDLLVSDCFVPQIVYS
TTFGYRTDLVGDTPPSSVCDVFDLEAYPGKRALQKRPIDNMEWALYCDGVAKDEIYDTLSTDEGVAQALA
KLDTIKDSVVWWTAGAETPQLLADGEVVMGSTYNGRLFSAIAEQDQPIGMLWDMQSFDLDGWVVPADLPA
DREARVLDFLKFATDTQRLADQAKYISYGPARASSAPLVGKHEELGIDMAPHMPTDPNNATNVHIYDYEW
WADNRDDLDAKFQAWLAQ
>gi|99082829|ref|YP_614983.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSDTTDTGPVLAADGTPLKRSLARALRMQKMRALALIAPLLLFVLLTFILPIGDMLFRSVENSIVSETLP
RTTAAAQSYDADSGEAPPEYAFDALAYDLVVAAEKKIHTRVGSRLNYENAGISSLFRKAGRRVDDIGEVY
LDQFVDLDPAWEDPQALVALFADPSWAASAGGENEARFEYSSVAGEALPGATDAYAAWARTIQEEDQDSP
TEEEPWAPVYMALYKDLAKNPDAASAFEGETAARLAAAAAAIQSPDWETMSTRDAFIKIDDDWADPEVWR
TIKTYSSKYTNGYFLNAADFQKGEDGPELRPELERIYGTLFLRTMIMSLAITVSCIVLGYPVAWILANLP
SRTANVLMILVLLPFWTSLLVRTSAWKVMLQQQGVINDVLVWLGLVADDARLVMINNQFGTIVAMTHILL
PFMILPMYSVMQTINPSYLRAAKSLGATNWTAFWRVYFPQSVPGIGAGSILVFILAIGYYITPELVGGTK
GVFISNRIAFHISQSLNWGLAAALGTILLVVVLVLYWAYDKIVGIDNVKLG
>gi|99082830|ref|YP_614984.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MALTPVQNQTPAFTAAVSAGAGAFFGLFVGTAQGSGLLGLVIGAVLLGALGFVFASMTAQEKPIRWAVLV
AFAIAGFVLGGLPALVIGALFGWFAGWFIFWLATSRYRATLVPYLTPGQVLWHYTFRVICGAIFVFLITP
ILVVMPLSFNAEDFFTFTPEMLRFDPEGYSLKHYRDFFTNADWQQALWNSLSIAPMATLLSVGFGTLAAI
GLSQPHVPFRRAIMAILISPMIVPLIISAAGMYFFYSRIGLQGTYFGVVLAHAALGIPFVIITVTATLVG
FDRSLTRAAANMGAGPVTTFFRVQMPLILPGVISGGLFAFITSFDEVVVVLFVGSAGQKTLPWQMFTGLR
EQISPTILAVATILVVISICLLTTVEMLRRRSERLRGMSPS
>gi|99082831|ref|YP_614985.1| lytic murein transglycosylase [Ruegeria sp. TM1040]
MRSWIKTALWLGVVLPAGAALAASETEAIKDRLRPEERPQQAYDTAGSLALASLTTIRPMARKSVAPAAQ
DALAPAREVDGDANAGFQRWITAFKIRAQTQGIGAATLRAAFNGVTYDASVIKRDRNQSEFTKTIWDYLD
SAASESRVRNGTKALDAHRNTLERIEKHFGVDKEIVVAVWGLESSYGSFRGDMDIIRSLATLAYDGRRGD
FFEEQLIAALKIIEAGDVNPRTMTGSWAGAMGHTQFIPTSYLDYAVDFTGDGKRDIWSDTPTDALASTAA
YLKAFGWVTGQPWGIEVVLPRGFDFTLANRKIQKSPREWADLGVRATDGRPIKDHGVASILLPAGGTGAA
FMIFKNFSVLERYNTADAYVIGVGHLSDRLKGGEKIKGSWPRGDRALTFTERKELQERLTRAGFSTEGID
GRIGPKTIAAVRAYQSAKGLMPDGYASLSLLEKLR
>gi|99082832|ref|YP_614986.1| helix-turn-helix, type 11 [Ruegeria sp. TM1040]
MMRPCYKALLTVFVISGLHTRQMTKTERLFRLMQTLRQLPPPVTAEQLAQDLGVSARTIHRDIDALRALG
AVIDGAAGFGFTLIEDATLPPLGFGATELEALVLGLCEVQQKGDPDLAEAARTALRKLRARLPQSQAKRL
QHAVLSAHSFAPPLTPTVDAAELRQATWDEREVGFDYVDVKGAVTQRHVKPLGLVYFDKSSVLVAWCRLR
QDFRVFRLDRMTSLEVTQISFRPHRVRLYREALDHLRNQSLG
>gi|99082833|ref|YP_614987.1| hypothetical protein TM1040_2993 [Ruegeria sp. TM1040]
MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDETDALIPDSEGI
RRFLEAKGANFDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWAGMLQSVFAGVPEEPLNLFRE
KVVEGLHFTGHSRFDRAERLQRLEQDLCALEDFLGDQHFLFGDHMTAADCSAAPMLEALSRAPAAPQVVE
VTRRHGKLLAYVTRVLDRGALELPQAA
>gi|99082834|ref|YP_614988.1| RNAse R [Ruegeria sp. TM1040]
MARIPTKAEILEWISAHPTQTSKRDIAKAFGIKGAERIDLKRVLKELEAEGHLEKRKRSYTDPDRLPPVS
VLLVKAPDENGDLFAQPLEWHGEGIEPIVMVIPRASDPALGEGDRILARLTVVQEEDHNYEARLIRRIGT
NPKRILGIFRQGSEGGRIVPIDKASSNEWQVPEANVHGAKDGELVEAELAGPKARMGLPKARIVERLGDP
SAPKAVSLIAIHQHGIPDHFPDAVIAEADSAKPMGLKGREDLRDLPLITIDPADARDHDDACFAHADEDP
MNPGGHVIWVAIADVAAYVTPGSALDREARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRPCLAVRL
QIDAEGHKIGHRFVRGLMKSQASLHYGEVQEAMDGKITERTEPFLEDVIKPLYAAYEALKAARAARQPLD
LDLPERKIVLDDKGKVASVNFRDRLDAHRLIEEFMVLANVAAAETLIKKRQPLLFRVHEEPSQDKLDALR
DTAQAAGLNLAKGQVLQTRHLNALLNAAAGTDDAELINISTLRSMQQAYYYPENFGHFGLALRNYAHFTS
PIRRYADLIVHRALITAHGWGKDGLSADEIERLEDTATHISATERRSMLAERDTTDRYLASYLAERVGNE
FSGRISGIARFGAFVKLDETGADGLVPVRSIGQEYFHFDAQAGTLMGSDTGLLITIGQRVTVRLTEAAPV
TGGLELELLALEGADLPKGRGGSRKGGRRRSPAGRTMTRSKAAKSKTKADKIKRKVTRKRK
>gi|99082835|ref|YP_614989.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MSPSIVVTRDLDTCLTLRFEVFVDEQGVPVEEERDALDDTATHLLALQDGVPVGTARVVFQDDIAKIGRV
CVVKSARGTGLGAKLIEACVAAAQEREGITKAKLGAQTHAIGFYEKLGFEAFGPVYLDAGIDHRDMMKPL
>gi|99082836|ref|YP_614990.1| succinyl-diaminopimelate desuccinylase [Ruegeria sp. TM1040]
MTTTDPVQLTADLVRCPSVTPTEGGALVLLERLLTDAGFSCTRVDRGEVCNLFARWGDKAHARTFGFNGH
TDVVPIGDEAAWTHDPFGAEIVEGVMYGRGTTDMKSGVAAFAAAAIDFVQDTPPDGAVVLTITGDEEGDA
VDGTTALLDYMDAAGEKMSVCLVGEPTCPNHMGEMIKIGRRGSMTAWFTVTGVQGHSAYPHRANNPMNGL
ARLMDRLGSHQLDEGSEHFDASTLAIVTIDTGNPATNVIPAQGRAAVNIRFNDLHSGASLTDWLQGEADK
VAKEFGLEVDMKVQISGESFITPPGDLSDLVSRAVQTETNQAPELSTTGGTSDARFVKSHCPVVEFGLVG
KTMHQVDENVDVAHIHQLKSIYSRILKDYFS
>gi|99082837|ref|YP_614991.1| hypothetical protein TM1040_2997 [Ruegeria sp. TM1040]
MSWLGLWHKEAQYFDAAGLTPSVERSCLLLREADALLPRGALVLEVSLPELRKPEPLVLFERGGDWPLRF
QLSAVPGGGINLVLEQYGAVFHQTLNPTKRGRADQVRLTYNWDAPAFEGQLALEWLDGDRAEIADIHAPR
PWRLADLEALIEGGPHCFIASGVEYIALSDQPEPVGPMPGLSPFTPVETETGARPIKDLRRGDLLRCASG
DLVPVLHKIEREVPAVGSFCPVQLRAPYFGLTQDITVAPFQRMVLTGSEVEYLFGCEAVLAPAEMLAATR
TARRVLPAGPITTYAQVILPGHEVPVVAGLGVESLFLGRIRRDRSALGASLFAGLDRNSLPEHAQPRYPV
VRAFDAAILAEHRTA
>gi|99082838|ref|YP_614992.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MTLRSIWFCLVTVLMTLPALPLRAQELVVNTVTRPPFSMPVGEHETGFTMDLIREVSQRLGWDIQINRVD
NFAQMLEEVERGEADMAAANISITAGREAVMDFSQPIFESGLQIMLHQDDVSEPSLISALMSWDLFAAIA
IAFVLLLVGGMLMWVFERRAQPYFDRPLKDAWFPSFWWALNLVVNGGFEERVPRSALGRVFGVLLVLSSL
FVVSVFVAKITAAMTVEAINGSVNSVNDLYGKRVGTIQGSTAAGFLDRREIDYVAFPGLDKMLEDFEDGD
TRIVVFDAPVLNHYVKTDGAGIGHVMGRKFLTEYYGIIFPQGSDMVEPFNRALLKMQEDGAYETLYRKWF
GQSF
>gi|99082839|ref|YP_614993.1| hypothetical protein TM1040_2999 [Ruegeria sp. TM1040]
MTQKKPSRQQVYTLIVQIGRKEGDGLPKDATGAALMVYASGVDEAEAVRETVAILKQADTAPLDVTGYGT
IAEREAEGHEIPQEERDLMQRALDENAVIVAQMTPFFGDELSAVDENSAPH
>gi|99082840|ref|YP_614994.1| hypothetical protein TM1040_3000 [Ruegeria sp. TM1040]
MPTAQELPIDTTASAEDMAEAIFGNGIEIQSATYTGANGASGIYSGGDSITPGVTPSDTGVILSTGNATD
FTNSSGSTDTNTSAGTSTNHGTAGDTDLDAIAGGTTYDAAVFEAEFVPEGSTLTMQFVFSSEEYLEYVNS
GFNDAVSVWVNGVEAELVVGDGNIAIDNINDTSNSDLYVDNPADSDLYNTEMDGFTVTLKLTAPVNPGET
NHIKIAIADTGDAAYDSNLLIAGDSVQTALVAENDQVLVWEGSSTTVDVLANDAQGSGAQLTITHINNQP
VTAGSSVTLANGEIITLNEDGTLEITGQPDVDTDETSVFTYTVADDEGNTDVAFVDLTTTPCFVEGTLID
TTEGPCPVEALEIGMTVVTRDHGAQPLRWIGRSIRTASGNDAPVRIAANTLGQHQEIELSPSHRVLLCSA
AAEMLFGQEEVLIPAHHLVNDSTIRRRSDGRRVTYFHLLFDQHEIIRGNGLESESYHPGAASLGGLDAET
RAEFFDLMGDSWQSYQNMKRPTLKSYETRALLGAVQ
>gi|99082841|ref|YP_614995.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MRRIEARVWDQGALLPTEADLAEEFGCARATVNRALRELADRGIIDRKRKSGTRVATLPVKQAKLEIATT
RRLVEERNATYRYALVSRSLQPAPGWLSSQMGLAINAQVLHMEVMHYADGQPFHFEDRWINIAAVPASET
ADFSETPPGEWLLAAVPFSNAEVSFFASAADAKIADYMACPPGTALFQMERSTWFQDQPVTFARMSFQPG
YRMRSRY
>gi|99082842|ref|YP_614996.1| hypothetical protein TM1040_3002 [Ruegeria sp. TM1040]
MRFDAAEIRPAPWKNGGGTTRELAVGQDVSGQIWRLSLAEIAREGPFSSFAGQWRIHTIISGQGLRLMGT
EETLEALPLAPLEFDGGIALDAQFIEGPCRAVNLIYDPRHLAATAEVRNGSLRAQRGDLVFVIRGALTLG
GKNFVAGQGAAVEAPARAEVEGTVLHFEIRVPPKET
>gi|99082843|ref|YP_614997.1| N-formimino-L-glutamate deiminase [Ruegeria sp. TM1040]
MQTIFAATACLPEGWAKDVRLTIKDGQISRIETGSAPVPGDTRVDVLLPALANLHSHSFQRAMAGRTEFR
GAGQDSFWTWRELMYRFLDHLTPDQYEAIAALTFMEMMEAGYASVGEFHYVHHQPGGTAYQSLSELSQRV
MAGAQQTGIGLTHLPVLYTYGGAQQQPLTGGQMRFGNDVERFSRLVTEARDAAQELGRDTRVGIAPHSLR
ATSPEDLAAVLPLAADSPIHIHIAEQPREVAEIKVWLGARPVEWLLGNAPVDNQWCLIHATHMTETETRH
MAHSGAVAGLCPITEANLGDGPFNGAHYLREGGRFGVGSDSNVRISLVEELRTLEYSQRLRDLARNVLVP
AEGSVGETLYLGAARGGAQALGRDAGRLEIGALADLVAIDCARPALFGLPEHQILDGLCFAADDHSVTDV
WAAGRHMVQTGRHIARDSILASYRKAITSLLAEL
>gi|99082844|ref|YP_614998.1| imidazolonepropionase [Ruegeria sp. TM1040]
MRDTYVLSGARLATMEAEGSYGLVEDGAIAIQGDEILWCGARGALPDTYAACPSTDLNGRLVTPAFIDCH
THIVFGGDRAGEFEMRLEGATYEEVAKAGGGIVSTVTATRAASLDALVTGALPRLDALIAEGVSTVEVKS
GYGLDRETELNMLRAARRLAEHRDVTVKTTFLGAHAVPAEYAGRADAYLDEVCLPTLRAAHAEGLVDAVD
GFCEGIAFSAAQIAKVFDVAAELGLPVKLHAEQLSHQGGTKLAAERGALSVDHVEYATEADARAMAASGS
VAVLLPGAFYTIRETQVPPVAEFRMHGVPMALATDCNPGSSPLTSLLLTLNMGCTLFRLTPEEALAGVTR
NAARALGMQDRGRIAPGLRADLAVWDVSRPAELAYRIGFNPLYARVMGGKMEVRT
>gi|99082845|ref|YP_614999.1| histidine ammonia-lyase [Ruegeria sp. TM1040]
MIEMIPGAVTLDTLERIWRHGTPARLADSARAGVEAAAAMVAEAAAGEVPVYGINTGFGKLASTKIAPED
TATLQRNLILSHSCGVGEPLAEDKTRLMMVLKLLSLGRGASGVRWAVIEQIQEMLARGVTPVVPSQGSVG
ASGDLAPLAHMTAAMIGEGEATIDGVRLPGAEALRRAGLEPIVLGPKEGLGLINGTQFSTACALTGLFEA
LEMARASMAIASLTTDAIMGSTAPLVADIHSLRGHAGQMEVAATMRDIMAGSEIRESHREGDTRVQDPYC
IRCQPQVVGAALDVLRMAARTLEIEANAVTDNPLVLVEAGQIVSGGNFHAEYVGFAADQIALAVAEIGAI
AQRRVALMVDPTLSHDLPPFLTPNPGLNSGFMIAEVTTAALMSENKHLANPCVTDSTPTSANQEDHVSMA
AHGALRLAKMNANLSVILGVEMLCAAQGVEARAPLKTSSRLQNLLDMLRGEIPSLGEDRYLAPEIETASA
MVRAGRVAQAAGVEVST
>gi|99082846|ref|YP_615000.1| N-formylglutamate amidohydrolase [Ruegeria sp. TM1040]
MIEVTQGSSPLVLGLPHTGTDVPAEVAQHLNDRGQALADTDWHIHDLYAGLVEGVTTVRTPIHRYVIDVN
RDPEGVSLYPGQNTTTLVPLTDFDGHPIWQQEPDAAETAHRLETYHVPYHAALEAEMKRVAGLHGFAILY
DCHSIRGDIPFLFEGRLPDFNVGTNLGATCAPSIEDMVFQRCQRAEGYTSVLNGRFKGGWTTRHYGRPDQ
GWHAIQMELAQATYCDEQPPWRYDPVRADRLRGHLTQILTDLTEWRPA
>gi|99082847|ref|YP_615001.1| urocanate hydratase [Ruegeria sp. TM1040]
MSDPRKNTRDIFPATGTEITAKSWLTEAPMRMLMNNLHPDVAENPHELVVYGGIGRAARTWQDFDLIVET
LKTLEEDQTLMVQSGKPVGVFQTHKDAPRVLIANSNLVPHWANWDHFNELDKKGLMMYGQMTAGSWIYIG
TQGIVQGTYETFAEAGRQHYGGDLTGKWILTGGLGGMGGAQPLAAVFAGACCLAVECNPDSIDFRLRTKY
LDEKAETLDEALEMIERWTKAGEAKSVGLLGNAADVFAELVERAKAGGMRPDIVTDQTSAHDPVNGYLPQ
GWTMAEWREKRETDKKAVEKASRASMKAHVKAMVDFHEMGIPTVDYGNNIRQVALEEGLETAFSFPGFVP
AYIRPLFCKGIGPFRWCALSGDPEDIRKTDAKMKELFPENESLHRWLDMAQDRIAFQGLPARICWIGLGD
RHKAGLAFNEMVRNGELSAPVVIGRDHLDSGSVASPNRETEAMMDGSDAVSDWPLLNALLNTASGATWVS
LHHGGGVGMGFSQHSGVVICCDGTEDADRRIGRVLWNDPATGVMRHADAGYEIAKDCAKEHGLNLPGILR
SE
>gi|99082848|ref|YP_615002.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MRESWKPTDYPSLCPYLICHDPEGTISFLQTVFEANLLQRLDQEDGSLMHAEVRIDDSIVMIGGLPGADD
NDAHVHLYVPDVQEAFDRAIAAGGKIVQEPLRKRNGDGVFGGVKGPSGTTWWLATQTDL
>gi|161899026|ref|YP_615003.2| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Ruegeria sp. TM1040]
MSNAQLETAIEAAWEARDTITPATKGETRDAIEATLAALDSGKLRVAEKQDSGDWHVNQWAKKAVLLGFR
LKDMEEQSGGPQGSGWWDKVDSKFKGWEAADWKTAGFRAVPNCVVRKSAYIAPGVVLMPSFVNLGAYVDE
GTMVDTWATVGSCAQIGKGVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGVIVREGSVLGMGV
FIGQSTKIVDRETGEVMYGEVPPYSVVVAGSMPSKNGINLYCAVIVKRVDEKTRSKTGINELLRD
>gi|99082850|ref|YP_615004.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MGGFAPYRTFMSETAVDKIFRALMERIVTGDLPAGEKLRQDHIARDYDVSHVPVREAFLRLEAKGLAKSI
PHKGMRVTALEPTEIREVIEMRVALEVLALTHALPRHDADTLAQVEAARQACDAAQDMVLWDRCNRQFHT
ALLQPCEMPRLLSAIEDLHITAARHLFVHWRDRWTSRIDSDHDALLEAVTAQDLPRACDILRRHLRRVS
>gi|99082851|ref|YP_615005.1| threonine dehydratase [Ruegeria sp. TM1040]
MDWTSQISGARGRIAQHVVKTPTVSVQSFGLAFPVELKLEHLQHAGSFKARGAFNTLLSTPVPEAGLVAA
SGGNHGAAVAFAARALGHNAKIYVPEIAGQTKIDLIRSTGAELEVVPGAYANALEAAQDWELQTGAMQIH
AYDAPATVAGQGTLFAEWEEQGLEADTILIAVGGGGLIGGALGWFEGRRKVVAVEPATSCALKTALMNGK
PTNVDVGGIAANALGARRIGDICFDLAHNARTPSVIVPDAAIEAAQHALWRDHRLLVEPAGATALAALMC
GAYLPARDEKVSVLLCGGNIDPEPLTDPATRLDVSFN
>gi|99082852|ref|YP_615006.1| hypothetical protein TM1040_3012 [Ruegeria sp. TM1040]
MSDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKPQLMLDEKGVE
STVVMFGGARIPAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASGGRRHVVVTGGGPGVMEAGNR
GAVDAGGESIGLNIVLPHEQAPNEYVTPELCFNFHYFAIRKMHFLMRAEAICVFPGGFGTLDELFEALTL
IQTGRMEPVPFLLFGRSFWEKIINWEALADAGTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGR
DR
>gi|99082853|ref|YP_615007.1| hypothetical protein TM1040_3013 [Ruegeria sp. TM1040]
MIGQQVGKMDDGILSLVREERRKALSPREWQFRLRGYGYAIRNEGDTQVLTRLPRGEAVGVLPADMS
>gi|99082854|ref|YP_615008.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040]
MTASAPITQDVLTLPRKEPEGGKINLVGLTRDRMRAVLIENGTPEKQAKMRVGQIWQWIYQWGVRDFAEM
TNLAKAYRAQLEETFEIRIPEVVSKQVSTDGTRKYLVRINGGHEVEVVYIPEDDRGTLCISSQVGCTLTC
SFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTPGAPKDETRLLSNIVLMGMGEPLYNFDNVRDAMKI
AMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHATTNEVRDVLVPINRRWNIDELLQALADY
PKVSNSERITFEYVMLDGVNDSDEDAHRLLDHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANII
YQAGYASPIRKTRGDDIMAACGQLKSATERARKSRKQIEAEAGVNNS
>gi|99082855|ref|YP_615009.1| hypothetical protein TM1040_3015 [Ruegeria sp. TM1040]
MEAGHMALKLRRLAGALLLAGMATSASAQQATTDNRVGAHVDWSVFEETSPRECIGVSAPKETVNTRDGR
VVAVRRSEIRLFVFYRPDSGNKGQVTFTGGYPFAPGSTVNMKIGDSEFELFTEGEWAWPATPTDDTKIIT
AMKRGADAVLTARSSRGTQTKDTFSLLGFTAAIEDAEKRCAG
>gi|99082856|ref|YP_615010.1| L-asparaginase II [Ruegeria sp. TM1040]
MTTPIAAAPFTELWRGDLLESQHHGHAVICNGKGEVIRSWGNPEQIIYPRSSCKMIQALPLLTSGAAARY
GLSTEQLALACASHNGAHIHIDRVGHWLDQLNLGEGDLRCGAQKPKDKDVLYDLIKRDDSPCQIHNNCSG
KHAGFLTLSQHLGAGPEYVEIDHPVQQACREAFEETTKESSPTYGIDGCSAPNFACSITGLARAMGWFAS
AHTRSGRADDAAVQLRDAMARHPELVAGEGRACTALMRDMGGKVSVKTGAEGVFVAILPEQQLGIALKIV
DGTTRAAENAITTLLVSLGALDRNSPSAKAYMTAPITNWNGIHCGEMRPASGLVF
>gi|99082857|ref|YP_615011.1| hypothetical protein TM1040_3017 [Ruegeria sp. TM1040]
MPQFIFAYHGGKAAETPEEEEKEMAAWMAWFQEMGDAVAIPGNPVGKSKTVSAAAITDDGGSNPISGYTV
VTADTIEEACEMAKGCPSVTDGTGTIEVAEIIEMVM
>gi|99082858|ref|YP_615012.1| hypothetical protein TM1040_3018 [Ruegeria sp. TM1040]
MFEVTFEVLLLLMAAGFAAGFIDAVAGGGGLITVPVLLIAGANPVTALATNKIQGLFGAATAAITYARGG
HVNLRTQWKSAVIAFFASIAGALLVSVLPVELIRYALPVLLIGIAVFFATKKGLNDEDRAQRLTPAVFAA
TMVPLCAAYDGLLGPGAGSFYMLAFVGLAGYGVLKATAHTKLLNFASNAGALAAFAVVATPWWLTGLAMG
FAQIAGARVGAGLAQKQGAKVIKPLLVLTTVSLAMKLIWDML
>gi|99082859|ref|YP_615013.1| phosphoserine phosphatase [Ruegeria sp. TM1040]
MYVATLLVNPATPTLEPALVESLRNAWGGGEANWLNPGIAAEFTLNALPDNQWDVWSDLQGMGVDLVLQP
AEGRRKKMLLADMDSTMIQQECIDELADEAGVGARVKDITARAMNGELDFEGALTERVGLLKGLPEEVIA
QVLDTRITLMPGGAALLATMKAHGAYAALVSGGFTAFTARVAGELGFDENRANTLIVEDGKLTGDVARPI
LGREAKVEALEEITARLGISEAEVIAVGDGANDLGMLTRAGAGVALHAKPSVAAECDIRINHGDLSALLY
VQGYSLDDFKG
>gi|99082860|ref|YP_615014.1| phosphoserine aminotransferase [Ruegeria sp. TM1040]
MAIAQPASRPANPRFSSGPCAKPPTYDLSKLAGAPLGRSHRAAVGKEKLLAAIEGTREVLGIPADYKIGI
VPASDTGAVEMAMWNLLGARKVEMLAWESFGAGWVTDVVKQLKIDAEVKTAEYGDIVDLQTVDTNNDVVF
TWNGTTSGVRVPNGDWIKDDREGLIICDATSAAFAQELPWKKLDVTTFSWQKVLGGEAAHGVIVLSPRAV
ERLESYTPAWPLPKIFRLTKGGKLIDGIFTGATINTPSMLAVEDYLFALDWARSVGGVEGLIGRANANAN
AIHAFAYANDWIENLANDPATRSNTSVCLKFTDKRIKDGASFAKSVAKRLEAEGIAYDIGAYRDAPAGLR
IWCGGTVETADIEAMLPWLAWAFEAEIAAQG
>gi|99082861|ref|YP_615015.1| D-3-phosphoglycerate dehydrogenase [Ruegeria sp. TM1040]
MAPKVLISDKLSDAAVQIFRDRGIDVDFLPDVGKDKEKLAEIIGQYDGLAIRSATKVTPTILENATNLKV
IGRAGIGTDNIDKEAASKKGVIVMNTPFGNMITTAEHAIAMMFAVARQVPEASASTHAGKWEKSKFMGVE
LTGKTLGVIGAGNIGGIVCDRARGLKMKVVAYDPFLSEEKAKKMQVEKVELDELLARADFITLHVPLTEQ
TKNILSRENISKTKKGVRIINCARGGLVDEEALAEALTSGHVAGAAFDVFSVEPAKENPLFNLPNVVCTP
HLGAATTEAQENVALQVADQMANYLLTGAVENALNMPSVTAEEAKIMGPWIKLADHLGAFAGQMTDEPIT
AINVLYDGVAADMNLDALNCSVVAGIMKKVNPDVNMVSAPVVAKERGIQISTTNQDKSGSFDGYIKVTVV
TAKRERSVAGTVFSDGKPRFIQIKGINIDAEVGAHMLYTTNQDVPGIIGTLGQTLGDMDVNIANFTLGRN
EVGGEAIALLYVDAEVPADARAKLAETGYFTQIKPLAFDVA
>gi|99082862|ref|YP_615016.1| bis(5'nucleosyl)-tetraphosphatase, ApaH [Ruegeria sp. TM1040]
MTKPIYAIGDIHGQTEQLERALELIERDGGAEAEIVFVGDYVDRGPDSRGVIDRLMQGQADGRNWTCLKG
NHDRMFSWFLEEFPREDPHLPVALYYLQERIGGAETLASYGISCAPEDRTSVVHEAARAAVPQQHLSWID
SLPLFHQTGAQFFVHAGIRPGVPLMDQAEQDMLWIRQGFLEHTEAHPHLIVHGHTAEKHPVHYGNRVDID
CGAGYGRTLVPVVFEGDRAWCLTPGGRQHLAPGS
>gi|99082863|ref|YP_615017.1| L-threonine 3-dehydrogenase [Ruegeria sp. TM1040]
MRPNTMKALEKSKPQEGLWMVQAPVPEIGPDEVLIKINKTGICGTDIHIWNWDDWAAHTVPVPMITGHEF
AGEIVELGRNVTGLTVGQRCSGEGHLIGTESRQSRSGKFHLDPGTRGIGVNEQGAFAQYLRLPAFNVVPL
PDDIPDDIGAILDPLGNAVHTALSFDLLGEDVLITGAGPIGIMAAAVARHAGARHVVITDVNADRLALAS
EVTRVRTVNVAVEDLNDVMHELGLREGFDVGLEMSGNQQALDQMVEALVMGGKIALLGIPPGKSPVDWSR
IVFKAITIKGVYGREMFETWYKMIAMLQNGLDVSGVITHRFAVDEFEQGFAAMKSGQSGKVVLDWTGG
>gi|99082864|ref|YP_615018.1| 2-amino-3-ketobutyrate coenzyme A ligase [Ruegeria sp. TM1040]
MSNAFLSHISETLTQIEADGLYKRERMITSPQGGEIRVGDREVINLCANNYLGLADHPDLIAAAKSVMDE
KGYGMASVRFICGTQDLHRTLEQKIANFLGKDDSILFAACFDANGGLFEPLLGPEDAIISDSLNHASIID
GIRLCKAQRYRYANNDMEDLEAKLKDARAKGVRHIMIATDGVFSMDGYLANLPAIREIADRHDAMVMVDD
CHATGFMGPKGAGTPDHFGVDVDILTGTLGKALGGAIGGYIAGPQPVIDLLRQRARPYLFSNSLPPAVVA
AGLEAIRLVEEGESLRRQLFENATIWREGLTRLGFDLLPGEHPIIPVMLGDAKLAQEMANKLFEEGVYVS
GFFFPVVPKGQARIRTQMNAALTQDELNRALNAFERAGKACGVI
>gi|99082865|ref|YP_615019.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MTDTTDDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGL
LEAGEAADRIDVLRARDVPVIDSKAAHCTIAILSPPEDVGGHEVYDISFASGGALISQPHAPGTREQLTV
LEGRVVLTSGTAEDRLEPGDTARYAADVAHAIAAPDGTARVFLIVKNG
>gi|99082866|ref|YP_615020.1| beta-ketothiolase [Ruegeria sp. TM1040]
MTDIVILDGARTAIGTFGGALAQTAPIDLGATVAKAAMERSGVDPAQIGTVVYGHVINTEPRDMYLSRVA
AMQAGIPESTPAMNVNRLCGSGAQAIVSGIQALMLGDAEYALTGGAESMSRSPFITPSTRWGQKMGDVKS
LDMMLGALNCPFGTGHMGVTAENVADEHEITRAQMDEFALVSQTRAAAAIEAGYFQSQIVPVDVKVKRDM
VPFEVDEHPKGTSMEALSGLRPVFKKDGRVTAGNASGINDGAAALVLATAEAAEKSGLKPKARILGYAHA
GVRPEVMGVGPIPAVEQLLKRIDMTVGDFDLIESNEAFAAQALAVNKALGLDSAKVNPNGGAIALGHPVG
ATGAIITVKALYELERTGGRRAIITMCIGGGQGIALAIERI
>gi|99082867|ref|YP_615021.1| 2-octaprenylphenol hydroxylase [Ruegeria sp. TM1040]
MRGPHNIIRLIRTGATLVRTGAMNVVLDAFDAPAPLRMVAYTLGWPFQWLGYKGDPEMPPATRAITALGP
AYIKFGQVLSTRPDVVGDDMARQLRVLQDKLPPFPREVAMAEVAKELGRPVDEIFSEFSEPIAAASIAQV
HRARLKETGQDVAVKVLRPGIERAFHKDVDAFYFAARIAELFAPGAKRLRPMDVITHFDGVVRGELDLRL
ESAAASEFADNTAEDAGFQLPPVLWDYSARRVMTLGWADGLPIGDNDALDSAGHDRRALGERVLSLFLNH
ALRDGYFHADMHQGNMKVAANGDIIAYDFGIMGHIDLYTRRVYAEILYGFIKRDYKRVAEVHFEAGYVPA
SQDVDEFARALRAVGEPIFGMDATHISMGRLLNYLFEVTERFGMETRTELILLQRTMVVVEGVARSLDPR
INIWDVAKPVVEDYIKASIGPRAIAADLGKTARVLARFGPRLPTLVERALIAQAHEPEPQNKRRPWKRAA
SAGAALGILATLLFTHLT
>gi|99082868|ref|YP_615022.1| demethylmenaquinone methyltransferase / 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase [Ruegeria sp. TM1040]
MTEKSDSTTHFGFETVPEHEKAGRVQGVFNSVASKYDIMNDVMSVGIHRIWKDAMMDWLAPRPGQRLLDV
AGGTGDISFRFLKRAGHGHSTVLDLTTPMLEEGRKRAEAEQMAECLDWVTGDAMALPFKDNTFDVYTISF
GIRNVTRPQEALNEAYRVLKPGGRLMVLEFSQLPNDGLQKLYDLYSFNVIPRMGQMIAGDYDSYQYLVES
IRNFPDQETFLGMVKSAGFENAKHRNLSMGIAALHSGWKI
>gi|99082869|ref|YP_615023.1| formamidopyrimidine-DNA glycosylase [Ruegeria sp. TM1040]
MPELPEVETVMRGLQPSMEGVVIARADVNRPDLRWPFPDRMTERLSGRRVLSMRRRSKYILADLDSGETL
LVHLGMSGRMTVSGDPLGQFVHSHPQLEKHDHVVFHMDNGARVTFNDPRRFGAMDLLETAKADSHKLLAV
LGPEPLGNDFHESHLVSAFKGRRTPVKSALLDQGIIAGLGNIYVCEALFRAGISPRREAGKISTSRVTSL
VPIIRQVLQDAIAAGGSSLKDFRQANGELGYFQHTFDVYGREGEPCRRAGCTGTVTRITQSGRSSFYCGK
CQR
>gi|99082870|ref|YP_615024.1| short chain enoyl-CoA hydratase [Ruegeria sp. TM1040]
MAYETINVDTQDHVCLIKLNRPEALNALNSVLLGELCAALEEADASDKVRCIVLTGSEKAFAAGADIKEM
SEMSYVDVFTSNLFADANDRIAAIRKPIIAAVSGYALGGGCEVAMMCDFIIAAETAKFGQPEINLGVIAG
MGGTQRLTRFVGKSKSMDMNLTGRFMTADEAERAGLVSRVVPAKKLIEEAMAAASKIAEKSVLTSIAAKE
AVNRAYELPLSEGMLFERRVFHSMFATEDQKEGMAAFLEKREAQFRDK
>gi|99082871|ref|YP_615025.1| 30S ribosomal protein S20 [Ruegeria sp. TM1040]
MANSPQAKKRARQNEKRFAINKARRSRIRTFLRKVEEAIASGDKEAATAALRAAQPELMRGVTRGVYHKN
TASRKISRLAARVKALG